BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (330 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q8CWK7 tRNA-dihydrouridine synthase A n=32 Tax=Gammapro... 516 e-145 UniRef50_Q8EAJ0 tRNA-dihydrouridine synthase A n=121 Tax=Bacteri... 477 e-133 UniRef50_Q88KX0 tRNA-dihydrouridine synthase A n=482 Tax=Bacteri... 389 e-107 UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteo... 389 e-107 UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii Rep... 370 e-101 UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales ... 370 e-101 UniRef50_D0LY25 TIM-barrel protein, yjbN family n=3 Tax=Bacteria... 360 4e-98 UniRef50_C9RM69 TIM-barrel protein, yjbN family n=1 Tax=Fibrobac... 351 2e-95 UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisell... 336 8e-91 UniRef50_A1AW94 TIM-barrel protein, yjbN family n=2 Tax=Gammapro... 334 3e-90 UniRef50_A5WG83 TIM-barrel protein, yjbN family n=2 Tax=Moraxell... 333 4e-90 UniRef50_D0KZZ8 Dihydrouridine synthase DuS n=1 Tax=Halothiobaci... 325 1e-87 UniRef50_Q2RTX4 Dihydrouridine synthase TIM-barrel protein yjbN ... 324 2e-87 UniRef50_B6BT49 tRNA-dihydrouridine synthase A n=4 Tax=SAR11 clu... 322 1e-86 UniRef50_B0C3E9 tRNA-dihydrouridine synthase A n=4 Tax=Bacteria ... 319 9e-86 UniRef50_A9W195 Dihydrouridine synthase DuS n=41 Tax=Bacteria Re... 314 3e-84 UniRef50_A8PLS2 tRNA-dihydrouridine synthase A n=1 Tax=Rickettsi... 310 3e-83 UniRef50_A5GPV9 TRNA-dihydrouridine synthase A n=25 Tax=cellular... 309 1e-82 UniRef50_A5EXU5 TRNA-dihydrouridine synthase A n=1 Tax=Dicheloba... 305 1e-81 UniRef50_A6U9Y2 Dihydrouridine synthase DuS n=3 Tax=Rhizobiaceae... 305 2e-81 UniRef50_Q04VP3 TRNA-dihydrouridine synthase n=4 Tax=Leptospira ... 295 2e-78 UniRef50_Q5ZVH8 Zinc binding TIM barrel protein, YjbN family n=6... 291 3e-77 UniRef50_B7J4N8 tRNA-dihydrouridine synthase A n=2 Tax=Acidithio... 288 1e-76 UniRef50_Q5SMC7 tRNA-dihydrouridine synthase n=3 Tax=Thermus Rep... 288 2e-76 UniRef50_Q87AY2 tRNA-dihydrouridine synthase A n=15 Tax=Bacteria... 285 2e-75 UniRef50_C6XGY7 tRNA-dihydrouridine synthase A n=1 Tax=Candidatu... 284 4e-75 UniRef50_A0EAZ6 Chromosome undetermined scaffold_87, whole genom... 283 6e-75 UniRef50_B1XUD8 Dihydrouridine synthase DuS n=2 Tax=Polynucleoba... 280 5e-74 UniRef50_Q22A31 TIM-barrel protein, yjbN family n=2 Tax=cellular... 278 2e-73 UniRef50_D1AMN2 Dihydrouridine synthase DuS n=3 Tax=Bacteria Rep... 271 3e-71 UniRef50_C6NVP5 tRNA-dihydrouridine synthase A n=1 Tax=Acidithio... 268 2e-70 UniRef50_Q056Y8 TRNA-dihydrouridine synthase A n=1 Tax=Buchnera ... 261 4e-68 UniRef50_C9MVS9 tRNA dihydrouridine synthase A n=2 Tax=Leptotric... 258 3e-67 UniRef50_A7AWB5 Dihydrouridine synthase (Dus) domain containing ... 251 2e-65 UniRef50_C7NAG3 Dihydrouridine synthase DuS n=1 Tax=Leptotrichia... 249 7e-65 UniRef50_B6KL93 Dihydrouridine synthase domain-containing protei... 245 2e-63 UniRef50_Q4N9T6 TRNA-dihydrouridine synthase A, putative n=2 Tax... 243 7e-63 UniRef50_Q0JEG3 Os04g0278900 protein n=3 Tax=Oryza sativa RepID=... 242 2e-62 UniRef50_Q9FI41 Emb|CAB87804.1 n=16 Tax=Embryophyta RepID=Q9FI41... 238 2e-61 UniRef50_Q8I2W5 Dihydrouridine synthase, putative n=8 Tax=Plasmo... 228 2e-58 UniRef50_C1FGA1 Predicted protein (Fragment) n=4 Tax=Mamiellales... 228 3e-58 UniRef50_A8MRX7 Uncharacterized protein At3g63510.2 n=5 Tax=Arab... 227 6e-58 UniRef50_C1E9S0 Predicted protein n=2 Tax=cellular organisms Rep... 224 2e-57 UniRef50_B7XK29 NIFR3-like protein n=1 Tax=Enterocytozoon bieneu... 214 3e-54 UniRef50_D0NZC8 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 213 7e-54 UniRef50_C4VAN5 Putative uncharacterized protein n=1 Tax=Nosema ... 207 6e-52 UniRef50_C5KTF9 tRNA-dihydrouridine synthase A, putative n=2 Tax... 197 4e-49 UniRef50_B2RZT4 NIFR3-like protein n=23 Tax=Borrelia RepID=B2RZT... 197 4e-49 UniRef50_B7GAU2 Predicted protein (Fragment) n=2 Tax=Bacillariop... 190 5e-47 UniRef50_C7HXQ4 Dihydrouridine synthase DuS n=1 Tax=Thiomonas in... 187 6e-46 UniRef50_Q8SUY1 Putative uncharacterized protein ECU07_1170 n=1 ... 182 2e-44 UniRef50_B6AK02 Dihydrouridine synthase family protein n=1 Tax=C... 182 2e-44 UniRef50_UPI0001BCA063 tRNA-dihydrouridine synthase A n=1 Tax=Ps... 176 7e-43 UniRef50_UPI00019056C2 tRNA-dihydrouridine synthase A n=1 Tax=Rh... 176 8e-43 UniRef50_B8BUP5 Predicted protein n=1 Tax=Thalassiosira pseudona... 173 9e-42 UniRef50_Q5CTC5 YjbN-like Dus1p tRNA dihydouriding synthase Tim ... 167 5e-40 UniRef50_A4S469 Predicted protein n=3 Tax=Mamiellales RepID=A4S4... 167 6e-40 UniRef50_UPI000038242A COG0042: tRNA-dihydrouridine synthase n=1... 162 1e-38 UniRef50_B7GEN0 Predicted protein (Fragment) n=2 Tax=Phaeodactyl... 146 9e-34 UniRef50_B5Y4A8 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 144 3e-33 UniRef50_B6KDG7 Putative uncharacterized protein n=3 Tax=Toxopla... 114 6e-24 UniRef50_UPI00016996DF tRNA-dihydrouridine synthase A n=1 Tax=En... 110 5e-23 UniRef50_B7FVG0 Predicted protein n=1 Tax=Phaeodactylum tricornu... 103 7e-21 UniRef50_Q86L21 Putative uncharacterized protein n=1 Tax=Dictyos... 103 9e-21 UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ac... 102 2e-20 UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobi... 99 2e-19 UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=A... 97 6e-19 UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured mar... 97 8e-19 UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister i... 97 1e-18 UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostri... 96 2e-18 UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadac... 95 3e-18 UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chlorof... 94 8e-18 UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3... 93 1e-17 UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-bind... 93 1e-17 UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonada... 93 1e-17 UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Ta... 92 2e-17 UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3... 92 2e-17 UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachl... 91 5e-17 UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bde... 91 5e-17 UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2... 90 1e-16 UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobact... 90 1e-16 UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family ... 90 1e-16 UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Ta... 89 2e-16 UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured ... 89 2e-16 UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes... 89 2e-16 UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacter... 89 3e-16 UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira c... 89 3e-16 UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteo... 88 5e-16 UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidami... 87 6e-16 UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidami... 87 6e-16 UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogen... 87 1e-15 UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 86 1e-15 UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfa... 86 2e-15 UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaprote... 85 3e-15 UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256... 85 3e-15 UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Ta... 85 3e-15 UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3... 85 3e-15 UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=A... 85 4e-15 UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellul... 84 7e-15 UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostri... 84 7e-15 UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes ... 84 1e-14 UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genom... 84 1e-14 UniRef50_D2VPF2 Predicted protein n=2 Tax=Naegleria gruberi RepI... 83 1e-14 UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteure... 83 1e-14 UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothi... 83 1e-14 UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organi... 83 1e-14 UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalk... 82 2e-14 UniRef50_B2KES4 Dihydrouridine synthase DuS n=1 Tax=Elusimicrobi... 82 2e-14 UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax... 82 2e-14 UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales ... 82 2e-14 UniRef50_B1MZ90 tRNA-dihydrouridine synthase n=39 Tax=Bacteria R... 82 2e-14 UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisell... 82 2e-14 UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 82 2e-14 UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroide... 82 2e-14 UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae Re... 82 3e-14 UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriace... 82 3e-14 UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3... 82 4e-14 UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=C... 82 4e-14 UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotale... 81 4e-14 UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3... 81 5e-14 UniRef50_D0NZC7 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 80 7e-14 UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 ... 80 7e-14 UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia... 80 8e-14 UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3... 80 8e-14 UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=... 80 9e-14 UniRef50_D2QXV2 Dihydrouridine synthase DuS n=4 Tax=Planctomycet... 80 9e-14 UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea Rep... 80 1e-13 UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bactero... 80 1e-13 UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14... 80 1e-13 UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aq... 79 2e-13 UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 79 2e-13 UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostri... 79 2e-13 UniRef50_Q5HJT5 Probable tRNA-dihydrouridine synthase n=92 Tax=F... 79 2e-13 UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase... 79 2e-13 UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium... 79 3e-13 UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=un... 79 3e-13 UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira ... 79 3e-13 UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococca... 78 3e-13 UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira ... 78 4e-13 UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylo... 78 4e-13 UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verruco... 78 4e-13 UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibac... 77 6e-13 UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteri... 77 7e-13 UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaeroc... 77 8e-13 UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Ta... 77 9e-13 UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 ... 77 9e-13 UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C... 76 1e-12 UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia R... 76 1e-12 UniRef50_O31546 Probable tRNA-dihydrouridine synthase 2 n=107 Ta... 76 1e-12 UniRef50_A6W1E8 Dihydrouridine synthase DuS n=1 Tax=Marinomonas ... 76 2e-12 UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Stre... 76 2e-12 UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natrana... 75 2e-12 UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfo... 75 2e-12 UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=L... 75 2e-12 UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseri... 75 3e-12 UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine... 75 3e-12 UniRef50_B0EC90 tRNA-dihydrouridine synthase, putative n=2 Tax=E... 75 3e-12 UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicute... 75 3e-12 UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candida... 75 4e-12 UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=I... 75 4e-12 UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3... 75 4e-12 UniRef50_B8P3J2 Predicted protein (Fragment) n=3 Tax=Agaricomyce... 75 4e-12 UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis... 75 5e-12 UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3... 74 6e-12 UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Met... 74 6e-12 UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax... 74 7e-12 UniRef50_Q0SMC0 Histidine phosphokinase/phophatase, putative n=1... 74 8e-12 UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiale... 74 8e-12 UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mo... 74 1e-11 UniRef50_D0J1P6 Dihydrouridine synthase, DuS n=7 Tax=cellular or... 74 1e-11 UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 74 1e-11 UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaeroc... 74 1e-11 UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Al... 73 1e-11 UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepI... 73 1e-11 UniRef50_B7XJM7 tRNA-dihydrouridine synthase 1 n=1 Tax=Enterocyt... 73 2e-11 UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=... 73 2e-11 UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Corioba... 72 2e-11 UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococ... 72 2e-11 UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium... 72 2e-11 UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=... 72 2e-11 UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassif... 72 3e-11 UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiob... 72 3e-11 UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ge... 72 4e-11 UniRef50_Q127F8 Dihydrouridine synthase, DuS n=7 Tax=Proteobacte... 71 4e-11 UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria R... 71 4e-11 UniRef50_Q9HGN6 tRNA-dihydrouridine synthase 1 n=1 Tax=Schizosac... 71 5e-11 UniRef50_B6JXB4 tRNA-dihydrouridine synthase n=1 Tax=Schizosacch... 71 5e-11 UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 71 5e-11 UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=... 71 5e-11 UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria ... 71 6e-11 UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Pe... 71 6e-11 UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_D... 71 7e-11 UniRef50_A2FU21 Putative uncharacterized protein n=1 Tax=Trichom... 70 7e-11 UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomyco... 70 7e-11 UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacte... 70 9e-11 UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium s... 70 1e-10 UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax... 70 1e-10 UniRef50_Q9CJW1 tRNA-dihydrouridine synthase C n=7 Tax=Gammaprot... 70 1e-10 UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogen... 70 2e-10 UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerof... 69 2e-10 UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas s... 69 2e-10 UniRef50_C2FRE5 tRNA-dihydrouridine synthase n=3 Tax=Lactobacill... 69 2e-10 UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like... 69 2e-10 UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter ... 69 3e-10 UniRef50_B8C389 Predicted protein n=1 Tax=Thalassiosira pseudona... 69 3e-10 UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=A... 69 3e-10 UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa... 69 3e-10 UniRef50_A8BQT4 tRNA dihydrouridine synthase, putative n=2 Tax=G... 69 3e-10 UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella R... 68 4e-10 UniRef50_Q47C15 Dihydrouridine synthase, DuS n=1 Tax=Dechloromon... 68 4e-10 UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax... 68 4e-10 UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bi... 68 4e-10 UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibr... 68 4e-10 UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseria... 68 5e-10 UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 ... 68 5e-10 UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliang... 68 5e-10 UniRef50_A4BCJ5 NifR3/Smm1 family protein n=1 Tax=Reinekea bland... 68 5e-10 UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ... 68 6e-10 UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii Re... 67 6e-10 UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenopho... 67 8e-10 UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammapro... 67 8e-10 UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=P... 67 9e-10 UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Eut... 67 1e-09 UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteo... 66 1e-09 UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91... 66 1e-09 UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisp... 66 2e-09 UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus... 66 2e-09 UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharopha... 66 2e-09 UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 66 2e-09 UniRef50_O74553 tRNA-dihydrouridine synthase 4 n=1 Tax=Schizosac... 66 2e-09 UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Cho... 66 2e-09 UniRef50_B7FXL2 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 65 2e-09 UniRef50_B9M3C8 Dihydrouridine synthase DuS n=2 Tax=Desulfuromon... 65 3e-09 UniRef50_Q88LF2 tRNA-dihydrouridine synthase C n=38 Tax=cellular... 65 3e-09 UniRef50_Q9KT00 tRNA-dihydrouridine synthase C n=75 Tax=Gammapro... 65 4e-09 UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicro... 65 4e-09 UniRef50_Q1QZQ6 Dihydrouridine synthase, DuS n=1 Tax=Chromohalob... 64 6e-09 UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n... 64 6e-09 UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammapr... 64 6e-09 UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verruco... 64 6e-09 UniRef50_B5RQ77 Histidine phosphokinase/phophatase, putative n=4... 64 7e-09 UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesi... 64 8e-09 UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conex... 64 8e-09 UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteob... 64 8e-09 UniRef50_A8JDX4 Predicted protein n=1 Tax=Chlamydomonas reinhard... 64 8e-09 UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xeno... 64 9e-09 UniRef50_B9K738 TIM-barrel protein, nifR3 family n=1 Tax=Thermot... 64 9e-09 UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collins... 64 9e-09 UniRef50_A8Y3E7 Putative uncharacterized protein n=2 Tax=Caenorh... 64 1e-08 UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agarica... 64 1e-08 >UniRef50_Q8CWK7 tRNA-dihydrouridine synthase A n=32 Tax=Gammaproteobacteria RepID=DUSA_VIBVU Length = 326 Score = 516 bits (1328), Expect = e-145, Method: Compositional matrix adjust. Identities = 237/314 (75%), Positives = 271/314 (86%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQ 69 S R SVAPMLDWTDRHCRYF RL+++ TLLYTEM+TTGAIIHGKGD+LAY++EEHPVALQ Sbjct: 4 SCRLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGDFLAYNQEEHPVALQ 63 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 LGGS+P LA CAKLA RGYDE+NLNVGCPSDRVQNG FGACLM QLVADCV AM++ Sbjct: 64 LGGSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKE 123 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 VV IPVTVKTRIGIDDQDSYEFL DF++ VS KG CE F IHARKAWLSGLSPKENREIP Sbjct: 124 VVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIP 183 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDRE 249 PLDYPR YQLK+DF HLT++INGG+KSLEEAK HLQH+DGVM+GREAYQ+P +LA+VD+E Sbjct: 184 PLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQE 243 Query: 250 IFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENA 309 +FGS +V MYPYIE++L+ G YLGH+TRHMLGLFQ +PGARQWRR++SENA Sbjct: 244 LFGSQSPIKKRRQIVEEMYPYIEQQLANGAYLGHMTRHMLGLFQNMPGARQWRRHISENA 303 Query: 310 HKAGADINVLEHAL 323 HK G+ I VL+ AL Sbjct: 304 HKPGSGIEVLQQAL 317 >UniRef50_Q8EAJ0 tRNA-dihydrouridine synthase A n=121 Tax=Bacteria RepID=DUSA_SHEON Length = 335 Score = 477 bits (1227), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/314 (72%), Positives = 258/314 (82%), Gaps = 1/314 (0%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGG 72 FS+APMLDWTDRH RYF RL+S N LLYTEMVTTGAI+HG+GDYL Y++EEHP+ALQLGG Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQEEHPLALQLGG 75 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 S+P LA+CAKLA RGYDE+NLNVGCPSDRVQNG FGACLM +LVA+CV AM+ VV Sbjct: 76 SNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVD 135 Query: 133 IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLD 192 IPVTVKTRIGID+QDSYEFL FI+TV KG C FIIHARKAWL GLSPKENREIPPLD Sbjct: 136 IPVTVKTRIGIDEQDSYEFLTHFIDTVMAKG-CGEFIIHARKAWLQGLSPKENREIPPLD 194 Query: 193 YPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFG 252 Y RVYQLKRD+P L +SINGGI SLE+A+ HLQH+DGVMVGREAYQNP +LA VD+ + G Sbjct: 195 YDRVYQLKRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYMLAQVDQVLCG 254 Query: 253 SSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKA 312 S+ AV+ AM PYIE L G L HITRHM+GLFQG+PGAR WRRYLSENAHK Sbjct: 255 STKAVMSREAVIEAMLPYIEAHLQVGGRLNHITRHMIGLFQGLPGARAWRRYLSENAHKN 314 Query: 313 GADINVLEHALKLV 326 GA I V++ A + V Sbjct: 315 GAGIEVVKLAYQSV 328 >UniRef50_Q88KX0 tRNA-dihydrouridine synthase A n=482 Tax=Bacteria RepID=DUSA_PSEPK Length = 336 Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/326 (59%), Positives = 233/326 (71%), Gaps = 2/326 (0%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-YLAYS 60 P T S RFSVAPM+DWTDRHCR+FLRLLSR TLLYTEMVTTGA++H +L + Sbjct: 9 PHTTRPEPSRRFSVAPMMDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHD 68 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 EHP+ALQLGGS PA LA CA+LAE GYDE+NLNVGCPSDRVQN M GACLM + LV Sbjct: 69 ASEHPLALQLGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALV 128 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 ADCVKAMRD VS PVTVK RIGI+ +DSY L DF+ V G C F +HAR A L GL Sbjct: 129 ADCVKAMRDAVSTPVTVKHRIGINGRDSYAELSDFVGQVREAG-CRSFTVHARIAILEGL 187 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNP 240 SPKENREIPPL Y QLKRDFP L + +NGGIK+L+E +AHL+ DGVM+GREAY NP Sbjct: 188 SPKENREIPPLRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNP 247 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 +LA VD+++FGS + + PYI + G + H+TRH+LGL QG GAR+ Sbjct: 248 YLLAEVDQQLFGSDAPVVSRSEALAQLRPYIVAHMESGGAMHHVTRHILGLAQGFKGARR 307 Query: 301 WRRYLSENAHKAGADINVLEHALKLV 326 +R+ LS + HKA + V + A++L+ Sbjct: 308 FRQLLSADIHKAAEPLAVFDQAVELL 333 >UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2SJJ8_HAHCH Length = 349 Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/320 (60%), Positives = 229/320 (71%), Gaps = 2/320 (0%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQL 70 RFSVAPM+DWTDRH RY RLLSR+T LYTEMVTTGAIIHG + +L ++ EEHP+A+QL Sbjct: 19 RFSVAPMMDWTDRHYRYLARLLSRHTYLYTEMVTTGAIIHGDRNRFLDFNAEEHPIAVQL 78 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GGS+P L +CAK+ E GYDEINLNVGCPSDRVQN M GACLMG + VA+CV AM Sbjct: 79 GGSNPDELKECAKICEDWGYDEINLNVGCPSDRVQNNMIGACLMGYPERVAECVAAMCSA 138 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 VSIPVTVK RIGIDDQDS EFL +F+ TV G C FIIHARKA L GLSPKENREIPP Sbjct: 139 VSIPVTVKHRIGIDDQDSEEFLLNFVRTVKAAG-CSTFIIHARKAILKGLSPKENREIPP 197 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L YPR Y +K+ FP L + INGGIK+++E+++HLQ +DGVM+GREAYQ P +LA VD + Sbjct: 198 LIYPRAYLIKQTFPELEIIINGGIKTMDESESHLQEVDGVMIGREAYQRPWMLADVDHRL 257 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAH 310 F + YIER G + H+ RH LGLF G G +Q+RRYLSENA Sbjct: 258 FHCPPPSFSATDIGYQFLEYIERNYQNGVAVWHMARHALGLFHGQKGGKQFRRYLSENAI 317 Query: 311 KAGADINVLEHALKLVADKR 330 K A V AL +V+ + Sbjct: 318 KRTASPTVFRDALDIVSSYK 337 >UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii RepID=A9KG09_COXBN Length = 353 Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/325 (57%), Positives = 234/325 (72%), Gaps = 11/325 (3%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG-DYLAYSEEEHPVALQL 70 R S+APM+ TDRH R F+R +SR+ LLYTEMVTTGA++ GK L YS EEHP+ALQ+ Sbjct: 30 RISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEHPLALQV 89 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GGSDP +LA CA+LAE +G+DEINLNVGCPS RV G FGACL+ A+LVADCV AM Sbjct: 90 GGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVTAGRFGACLLKEAELVADCVAAMSAE 149 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 V+IPV+VKTR G+DDQDSYE L F+ TV+ G C +FIIHARKAWL GLSP ENR +PP Sbjct: 150 VNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAG-CRIFIIHARKAWLKGLSPAENRTVPP 208 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD--- 247 L YP VYQLK+DFP L + INGGIK++E HL+ +DGVM+GREAY NP AA D Sbjct: 209 LAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCAAFDDLS 268 Query: 248 REIF--GSSDTDADPVAVVRAM---YPYIERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 + +F G +D P+ R + PY+ ++L+ G L +TRH+ GLFQG PGA++WR Sbjct: 269 KPVFSLGVADKKQTPLTPKRVLLRYLPYMAKQLANGVPLYAMTRHLNGLFQGQPGAKKWR 328 Query: 303 RYLSENAHKAGADINVLEHALKLVA 327 R+L EN + G I +E AL+L + Sbjct: 329 RFLHENTRREGP-IAAIEEALRLAS 352 >UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales RepID=B1XI00_SYNP2 Length = 344 Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/316 (56%), Positives = 219/316 (69%), Gaps = 2/316 (0%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQLG 71 SVAPM+D TDRH RY +R ++R TLLYTEM+TT AIIHG + L + EHP++LQLG Sbjct: 14 LSVAPMMDRTDRHFRYLMRRITRRTLLYTEMITTQAIIHGDRPKLLDFDAAEHPISLQLG 73 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G +P LA+CAK+ E GYDEINLNVGCPS RVQ G FGACLM +LVADCV AM+ V Sbjct: 74 GDNPKELAECAKVGEDWGYDEINLNVGCPSPRVQQGNFGACLMTQPELVADCVAAMQGAV 133 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 +IPVTVK RIG+D+QDSY LC FI VS G C+ F +HARKAWL GLSPKENR +PPL Sbjct: 134 NIPVTVKHRIGVDEQDSYADLCRFIEIVSATG-CDRFSVHARKAWLQGLSPKENRTVPPL 192 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 251 Y VY+LK+DFPHL + INGGI +LE + HL +D VMVGR AY NP + A VDR+I+ Sbjct: 193 RYADVYRLKQDFPHLWIEINGGITTLEHIQTHLTQVDAVMVGRAAYDNPYLFATVDRDIY 252 Query: 252 GSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHK 311 G + +V M PYIER G L I+RHML LF G PG + W+R+++E Sbjct: 253 GEAIQPKSRHEIVEEMLPYIERATKAGVKLHSISRHMLSLFLGQPGTKAWKRFITEEGRG 312 Query: 312 AGADINVLEHALKLVA 327 ++E AL LV+ Sbjct: 313 TTVGREIIEQALALVS 328 >UniRef50_D0LY25 TIM-barrel protein, yjbN family n=3 Tax=Bacteria RepID=D0LY25_HALO1 Length = 376 Score = 360 bits (923), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 181/312 (58%), Positives = 217/312 (69%), Gaps = 2/312 (0%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQLG 71 SVAPM++ TDRH RYFLR +SR+TLLYTEM+ TG IIHG + YL +SE EHP+ALQLG Sbjct: 42 LSVAPMMECTDRHFRYFLRQISRHTLLYTEMIVTGTIIHGDRPRYLDFSEAEHPIALQLG 101 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G D ALA CA++AE GYDE+NLNVGCPS RV +G FGACLM ++VA V+AMR V Sbjct: 102 GDDAEALATCARIAEDWGYDEVNLNVGCPSSRVSSGSFGACLMARPEVVARAVEAMRAAV 161 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 +IPVTVK RIGIDD+D YE + +F+ V+ G + F +HARKAWLSGLSPKENRE+PPL Sbjct: 162 AIPVTVKHRIGIDDRDRYEDMREFVRVVAEAG-ADRFSVHARKAWLSGLSPKENREVPPL 220 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 251 Y V++LKR+FPHL + INGGI L+ A+ L H+D VM+GR AY P I A D F Sbjct: 221 RYADVHRLKREFPHLPIEINGGIVDLDSAQEQLAHVDAVMIGRAAYNTPWIFAEADARFF 280 Query: 252 GSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHK 311 GS AVV AM Y+E + +G L ITRHM LF G GAR WRRYL+E A Sbjct: 281 GSVAPTPTQTAVVEAMIDYVEAQRGRGVPLHRITRHMFQLFAGQRGARGWRRYLTEQAKS 340 Query: 312 AGADINVLEHAL 323 A VL AL Sbjct: 341 RDAGPEVLRVAL 352 >UniRef50_C9RM69 TIM-barrel protein, yjbN family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RM69_FIBSS Length = 345 Score = 351 bits (900), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 176/344 (51%), Positives = 234/344 (68%), Gaps = 20/344 (5%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH--GKGDYLAYSEEE 63 ++ ++ R S+APMLD TDRH RYFLRLLS++ LLY+EMV + ++H K +L + E Sbjct: 2 NIDFNRRLSIAPMLDCTDRHERYFLRLLSKHILLYSEMVVSTGLLHCENKDLFLGHEPFE 61 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 HP LQLGGS+PA LA +KL EA G+ E+NLN GCPSDRVQNG FGACLM +VADC Sbjct: 62 HPAVLQLGGSNPADLASASKLVEAAGFSEVNLNCGCPSDRVQNGNFGACLMKEKNVVADC 121 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 KAM+D VSIPV++K RIG+DD DS+EF DFI TV G C++FI+HARKAWL GLSPK Sbjct: 122 FKAMQDAVSIPVSIKCRIGVDDLDSWEFFTDFIQTVRDAG-CKIFIVHARKAWLKGLSPK 180 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGIL 243 ENRE+PPL Y V++LK + P L +SINGGIK+L++ + L+ +DGVMVGREAY+NP L Sbjct: 181 ENREVPPLHYEFVHRLKAEMPELNLSINGGIKTLDQIEEQLKDLDGVMVGREAYENPWFL 240 Query: 244 AAVDREIFGSSDTDA-DPV-------------AVVRAMYPYIERELSQGTYLGHITRHML 289 D IFG ++ DP A++ A PY+E++ ++G + +H+ Sbjct: 241 HDADARIFGDVRPESNDPAEIIAGNARPATRKALLEAYLPYVEKQTAEGCPATILVKHLY 300 Query: 290 GLFQGIPGARQWRRYLSEN---AHKAGADINVLEHALKLVADKR 330 GLF G+PGAR++R LS AH G ++ A++LV + R Sbjct: 301 GLFAGLPGARKFRATLSNESPRAHLYGGAAALIRKAMELVGETR 344 >UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisella RepID=A7NDQ7_FRATF Length = 327 Score = 336 bits (861), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 159/321 (49%), Positives = 217/321 (67%), Gaps = 4/321 (1%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL-AYSEEEHPVALQL 70 + +APMLDWTDRH RY +RL++R+T+LYTEMVT AI+HG ++L Y+ +E+PV LQL Sbjct: 7 KICIAPMLDWTDRHYRYMMRLITRHTMLYTEMVTLNAILHGNKEFLLKYNPQENPVTLQL 66 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG P C KLAE Y+EIN+NVGCPS+RV+ G FG LM +LVADCVKAM+D Sbjct: 67 GGCVPKDFISCGKLAEELDYNEININVGCPSERVKKGNFGLSLMAEPELVADCVKAMKDN 126 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 ++IP++VK RIG D DSYE L +F++ G + IHARK WLSGLSPKENR IP Sbjct: 127 LNIPISVKCRIGYDHNDSYEELYNFVDKQVQAG-IDYLCIHARKGWLSGLSPKENRTIPE 185 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L Y VY +K+DFP+L + INGGI +++E + HL+++D VM+GREAY NP + D Sbjct: 186 LKYDVVYSIKKDFPNLELGINGGITTIQEIQQHLKYVDSVMIGREAYHNPMLFKDFDNIF 245 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSEN 308 + T+ + + M YI+ ++ Y L +IT+H L LF G+P A+ +RRYLSEN Sbjct: 246 YNQPTTNISALEIAYKMAEYIKDQMDNDPYIKLNNITKHTLNLFNGLPNAKVYRRYLSEN 305 Query: 309 AHKAGADINVLEHALKLVADK 329 A K A+++ AL++ +K Sbjct: 306 ATKKEANVDTFLTALEVFENK 326 >UniRef50_A1AW94 TIM-barrel protein, yjbN family n=2 Tax=Gammaproteobacteria RepID=A1AW94_RUTMC Length = 322 Score = 334 bits (856), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 154/301 (51%), Positives = 212/301 (70%), Gaps = 2/301 (0%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHP 65 +++ +FSVAPM+DWTDRHCRYF RL+S+N L+TEMVT AI++G K L ++ EHP Sbjct: 1 MNYHSKFSVAPMMDWTDRHCRYFYRLISKNVQLWTEMVTARAILYGNKNRLLDFNVCEHP 60 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + LQLGGS+P +AQ AK+A+ GY+EIN+NVGCPS+RVQ+ FG CLM Q+VA CV Sbjct: 61 LVLQLGGSEPKEMAQAAKIAQDWGYNEININVGCPSNRVQSSNFGVCLMQTPQVVAQCVD 120 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 AMR +V +P+TVK+RIG+D+ DSY+ L +F+ TV G C+ +IHARKAWL GLSPKEN Sbjct: 121 AMRQMVDVPITVKSRIGVDNMDSYDELVNFVATVESSG-CDNLVIHARKAWLKGLSPKEN 179 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAA 245 R +P L+Y RVYQ+KRDFPHL + INGGI +E + HL+H+D VM+GR Y P +L Sbjct: 180 RSVPKLNYERVYQIKRDFPHLAIGINGGIMDMESSLQHLEHVDSVMLGRAVYHQPYLLRK 239 Query: 246 VDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL 305 VD I+ + V+ A Y++ + + + +TRH+ GL+ G A++++R L Sbjct: 240 VDGLIYQKKSSILSREQVLLAFIEYMKVQHANSVLIRSMTRHIFGLYHGQKNAKKFKRLL 299 Query: 306 S 306 S Sbjct: 300 S 300 >UniRef50_A5WG83 TIM-barrel protein, yjbN family n=2 Tax=Moraxellaceae RepID=A5WG83_PSYWF Length = 348 Score = 333 bits (855), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 166/314 (52%), Positives = 218/314 (69%), Gaps = 9/314 (2%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-YLAYSEEEH 64 D+ + R SVAPM+DWT R+F RL + +T LYTEM++T AI+ GK D L Y EH Sbjct: 16 DLMHNKRLSVAPMIDWTTTDYRFFARLFNPHTYLYTEMISTSAILQGKTDRLLRYDTLEH 75 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+ LQLGG+D + + QCA A+ RG++E+N+NVGCPSDRVQ+ GACLM VA V Sbjct: 76 PLVLQLGGADISEMTQCAVEAQKRGFNEVNINVGCPSDRVQHNKIGACLMAEPDTVAALV 135 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 + M+ V IPVTVK RIGID+ DSYEF+ DF+ + S + C+ FI+HAR AWL+GLSPKE Sbjct: 136 RNMQAHVDIPVTVKHRIGIDEHDSYEFMQDFV-SASAEAGCQRFIVHARIAWLNGLSPKE 194 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILA 244 NREIPPL Y VY+LK+ FP L + INGGI S+E+ KAHLQ +DGVM+GR AY NP ILA Sbjct: 195 NREIPPLRYEDVYRLKQAFPELHIEINGGIDSIEQIKAHLQQVDGVMIGRAAYHNPYILA 254 Query: 245 AVDREIFGSSDTDADP--VAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 +G +A P ++ +YPY+E+++++G L + RH LGLFQG+PGAR+WR Sbjct: 255 EA-MSFWG----EAAPSRAQILTKLYPYLEQQVAKGEPLPSLARHFLGLFQGLPGARKWR 309 Query: 303 RYLSENAHKAGADI 316 + LS + DI Sbjct: 310 QALSGKQQMSVDDI 323 >UniRef50_D0KZZ8 Dihydrouridine synthase DuS n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZZ8_HALNC Length = 357 Score = 325 bits (833), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 170/321 (52%), Positives = 221/321 (68%), Gaps = 2/321 (0%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHPVAL 68 S F +APMLDWTD H R RL++RN LYTEMVTTGA++HG +L+++ EHPVAL Sbjct: 8 SWHFCIAPMLDWTDTHYRVLARLMTRNARLYTEMVTTGALLHGDVSRHLSFNAAEHPVAL 67 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 QLGGSDP+ LA A L GYDEINLNVGCPSDRVQNG FGACLM ++VA V+AM+ Sbjct: 68 QLGGSDPSDLAAAAVLGAEWGYDEINLNVGCPSDRVQNGSFGACLMATPEVVAKGVRAMQ 127 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 V +PVT+KTR+GID DS+E FI+ V+G+G CE+FIIHARKAWL GLSPKENREI Sbjct: 128 ASVDVPVTLKTRVGIDRSDSFEAFARFIDIVAGQGGCEVFIIHARKAWLDGLSPKENREI 187 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD-GVMVGREAYQNPGILAAVD 247 PPL VY+++ +P LT +NG ++++ E +A L + G+MVGR AYQ+ L VD Sbjct: 188 PPLRRDFVYRIQDAYPELTFVLNGKLETIPEMQAELARVPGGIMVGRAAYQHVDWLRFVD 247 Query: 248 REIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 + +F S AVV+ Y+ + L GT + + + +L LF G+PGAR +RR+LSE Sbjct: 248 QMLFDHSAPIPTRSAVVQGYRAYMLQALESGTPMPPLLKPLLTLFNGLPGARAFRRHLSE 307 Query: 308 NAHKAGADINVLEHALKLVAD 328 + DI+VL+ AL L+ D Sbjct: 308 QGPRRKTDIHVLDEALDLIPD 328 >UniRef50_Q2RTX4 Dihydrouridine synthase TIM-barrel protein yjbN n=3 Tax=Bacteria RepID=Q2RTX4_RHORT Length = 349 Score = 324 bits (831), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 166/320 (51%), Positives = 216/320 (67%), Gaps = 9/320 (2%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQL 70 R SVAPM+DWTDRH R+FLR +++ TLLYTEM+T A++H G +L + +EHP+ALQL Sbjct: 20 RLSVAPMMDWTDRHDRWFLRQITKRTLLYTEMITAQALLHADPGRFLDHHPDEHPLALQL 79 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GGSDP ALA+ +LA G+ EINLNVGCPSDRV +G FGACLM + LVA+C+ AM + Sbjct: 80 GGSDPRALAEATRLAAPFGFAEINLNVGCPSDRVSSGRFGACLMADPALVAECLSAMAEA 139 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 + PVT+K RIGIDD DSY+ L F++ V+ G I+HARKAWL GLSPKENREIPP Sbjct: 140 SNAPVTIKHRIGIDDLDSYDQLVGFVDQVARSG-IATIIVHARKAWLKGLSPKENREIPP 198 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL-------QHMDGVMVGREAYQNPGIL 243 L + V++LK DFP L + +NGGI +L +A HL +DGVM+GR AY+ P +L Sbjct: 199 LRHDVVHRLKADFPGLEVILNGGITTLTQALDHLGSGDPAAPAVDGVMIGRAAYETPYML 258 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 A D IFG + V A+ PY++ ++G + +TRH+LGLF G PGAR +RR Sbjct: 259 AQADGLIFGEATPAPSRHEVALALLPYLDAMTARGEPVKRLTRHILGLFHGQPGARAYRR 318 Query: 304 YLSENAHKAGADINVLEHAL 323 +L E + A VL AL Sbjct: 319 HLGEAGVRPDATAQVLIDAL 338 >UniRef50_B6BT49 tRNA-dihydrouridine synthase A n=4 Tax=SAR11 cluster RepID=B6BT49_9RICK Length = 334 Score = 322 bits (825), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 155/327 (47%), Positives = 219/327 (66%), Gaps = 7/327 (2%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEE 63 T+ S + SVAPM+D TDRH R+FLRL+S+N +LY+EMV T + IHG + L+YS EE Sbjct: 3 TNNKISRKISVAPMMDCTDRHDRFFLRLMSKNVMLYSEMVATKSAIHGDRKKILSYSPEE 62 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P+ALQ+GGS+ LA+ AK+AE GYDEIN+N+GCPS +VQ MFGACLM LVA+C Sbjct: 63 KPLALQVGGSNKDELAEVAKIAEDMGYDEININLGCPSKKVQKNMFGACLMKEPDLVAEC 122 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + +M + +IPVT KTRIG D + +++L +FI+ + G + FI+HARKA L+GLSPK Sbjct: 123 INSMVNSCNIPVTAKTRIGFDQTEDFDYLNNFIHKMRDAG-TKTFILHARKAMLTGLSPK 181 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGIL 243 +N IP L+Y VY++K+ P L + INGGI + E HL+ DGVM+GR YQNP L Sbjct: 182 QNLNIPKLNYNMVYEIKKKNPELEIIINGGISKVSEIDNHLKFCDGVMIGRSIYQNPYSL 241 Query: 244 AAVDREIFGSSDTDADPV--AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 ++R+IF +T +P VV + Y ++E+ GT + HI RH +GL+ G G++ W Sbjct: 242 IEIERDIF---NTHNNPTREQVVEKLLEYADKEVKLGTKINHIMRHTVGLYHGQTGSKDW 298 Query: 302 RRYLSENAHKAGADINVLEHALKLVAD 328 +RYLS+N +D +H + +V + Sbjct: 299 KRYLSDNLMARESDFQKTKHIMTIVQN 325 >UniRef50_B0C3E9 tRNA-dihydrouridine synthase A n=4 Tax=Bacteria RepID=B0C3E9_ACAM1 Length = 335 Score = 319 bits (817), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 162/315 (51%), Positives = 209/315 (66%), Gaps = 3/315 (0%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQLGG 72 SVAPM+D TDRH RYF+R +++ TLLYTEMVT+ AI++G + L +S E P+ LQ+GG Sbjct: 14 SVAPMMDRTDRHFRYFMRQITQRTLLYTEMVTSAAILNGDRHHLLDFSPIEKPLVLQVGG 73 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 +P LA+CA++A GYDEINLNVGCPS RVQNG FGACLM VA CV+AM Sbjct: 74 DNPQDLAECARIATDWGYDEINLNVGCPSSRVQNGHFGACLMAQPDRVAACVEAMMQATH 133 Query: 133 IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLD 192 +PV+VK RIGIDD D YE + F+ TV+ G C++F +HARKAWL GLSPKENR+IPPL Sbjct: 134 LPVSVKHRIGIDDCDRYEDMAHFVQTVAASG-CQIFSVHARKAWLKGLSPKENRDIPPLR 192 Query: 193 YPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFG 252 Y VY+LK++F HL + INGG L + L +D VM+GR AY NP + A VDR+ + Sbjct: 193 YEDVYRLKQNFSHLWIEINGGFIQLFQVHNQLPKVDAVMIGRAAYDNPYLFATVDRDFYH 252 Query: 253 SSDTDADPVAVVRAMYPYIERELSQGTYLGH-ITRHMLGLFQGIPGARQWRRYLSENAHK 311 + V +AM Y+E +G H ITRHML LF G PG+R W+R L+E + Sbjct: 253 EDRSAPSRHKVAQAMMDYLEEWKIKGLLKPHSITRHMLQLFSGQPGSRAWKRLLTEQGCR 312 Query: 312 AGADINVLEHALKLV 326 A +++ AL V Sbjct: 313 PDAGPDIIHQALDKV 327 >UniRef50_A9W195 Dihydrouridine synthase DuS n=41 Tax=Bacteria RepID=A9W195_METEP Length = 354 Score = 314 bits (804), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 169/329 (51%), Positives = 212/329 (64%), Gaps = 2/329 (0%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSE 61 EK + RFSVAPM+DWTDR CR F R LSR LYTEMVTTGA++HG + L + Sbjct: 20 EKLNELSGWRFSVAPMMDWTDRQCRAFHRTLSRRARLYTEMVTTGAVLHGDRERLLGFDA 79 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E P+A+QLGGS+P LA A++A GY EINLNVGCPSDRVQ+G FGACLM LV Sbjct: 80 YEQPLAVQLGGSNPDDLAAAARIAADFGYAEINLNVGCPSDRVQDGRFGACLMREPGLVG 139 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 CV A++ V +PVTVK R+G+DDQD E L + V G + ++HARKAWL GLS Sbjct: 140 ACVAALKAAVPVPVTVKCRLGVDDQDIEEALDAVADAVVAAGGDGL-VVHARKAWLKGLS 198 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPG 241 P+ENR++PPLDY RV +LKR P L +++NGGI + AKA L +DGVM+GR AY P Sbjct: 199 PRENRDVPPLDYGRVARLKRAHPDLPIAVNGGIADIAAAKARLGEVDGVMIGRAAYTEPA 258 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 +L VD E+FG AD A + A P + L +G L TRHMLGLF G PGAR + Sbjct: 259 LLLDVDAELFGEPAPVADAFAAIEAFEPIVAAGLERGLRLHAYTRHMLGLFNGRPGARAY 318 Query: 302 RRYLSENAHKAGADINVLEHALKLVADKR 330 RR+L+ A + L A+ V+ +R Sbjct: 319 RRHLATAGMGPEAGLATLREAVAKVSRER 347 >UniRef50_A8PLS2 tRNA-dihydrouridine synthase A n=1 Tax=Rickettsiella grylli RepID=A8PLS2_9COXI Length = 330 Score = 310 bits (795), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 155/332 (46%), Positives = 211/332 (63%), Gaps = 9/332 (2%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH--GKGDYLAY 59 P+K H VAPML WT RH YF RL+ + LYTEM T AI+ + L Sbjct: 4 PQKKHAH---SLMVAPMLGWTTRHYHYFFRLICKKAQLYTEMFTAQAILKSPARERLLTV 60 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 E +A+QLGG + L++ AK+ E+ GY EINLNVGCPS++VQ+G FG L+ Sbjct: 61 DANEKALAIQLGGGIASDLSKAAKIVESYGYSEINLNVGCPSEKVQSGGFGVVLLKEPNR 120 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 VAD + AM+ VV +PVTVKTRIG+D+ +SY++L FI VS G C+ FIIHARKAWL G Sbjct: 121 VADAIAAMKAVVRLPVTVKTRIGVDNDESYDYLASFIRQVSLAG-CDTFIIHARKAWLHG 179 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQN 239 +SPKENREIPPL+YP VYQ+KRDFPHLT+ +NGGI L+ A LQH+D VM+GR A+ N Sbjct: 180 VSPKENREIPPLNYPWVYQIKRDFPHLTIVLNGGITCLKRAYQQLQHVDAVMIGRAAWYN 239 Query: 240 PGILAAVDREIFGSSDTDADP--VAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 P + A +D + D P +++ PY+E+ L G L H+ + +LGLF G+ G Sbjct: 240 PYLFAQLD-ALISPQDRFIVPHRFSIILQYLPYLEKALKSGENLAHLIQPLLGLFHGVVG 298 Query: 298 ARQWRRYLSENAHKAGADINVLEHALKLVADK 329 +QWR+ LSE + + + + E + ++ + Sbjct: 299 TKQWRQTLSELLQRRYSFVKIKETLQEFISRR 330 >UniRef50_A5GPV9 TRNA-dihydrouridine synthase A n=25 Tax=cellular organisms RepID=A5GPV9_SYNR3 Length = 335 Score = 309 bits (791), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 169/326 (51%), Positives = 221/326 (67%), Gaps = 7/326 (2%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-YLAYSEEEHPV 66 H + RFSVAPM+D+TDRH R +R +SR+ LLYTEMV A+ HG+ D L + E P+ Sbjct: 11 HPAYRFSVAPMMDYTDRHFRVVMRQVSRHALLYTEMVVAQALHHGRQDTLLGFDPLEKPI 70 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 ALQLGG DPA LA+ A+LAE GYDEINLNVGCPS +V+ G FGACLM Q VA CV+A Sbjct: 71 ALQLGGDDPALLAEAAELAERWGYDEINLNVGCPSPKVKKGRFGACLMAEPQQVARCVEA 130 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 M +PVTVK RIGID++DSY+ L DF++TV+ G C+ F +HARKAWL GL PK+NR Sbjct: 131 MGAACRLPVTVKHRIGIDERDSYDELLDFVDTVAAAG-CQRFAVHARKAWLEGLDPKQNR 189 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAV 246 +PPL Y V+ LKRD P L + +NGG++SL + L +DGVMVGR AY +P V Sbjct: 190 TVPPLRYDLVHALKRDRPALIVELNGGLESLSACQEQLHAVDGVMVGRAAYAHPLQWNRV 249 Query: 247 DREIFGSSDTDADPVA---VVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 D+EIFG D++A P+ V++ + P+ E S G L I RH++ L +G+ GAR WRR Sbjct: 250 DQEIFG--DSNATPIKASEVLQGVLPHAEHWCSSGGRLWPIARHLVHLVEGVSGARYWRR 307 Query: 304 YLSENAHKAGADINVLEHALKLVADK 329 LS A A +VLE A++ + ++ Sbjct: 308 QLSVEASDRSARPDVLERAMRQLQER 333 >UniRef50_A5EXU5 TRNA-dihydrouridine synthase A n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXU5_DICNV Length = 335 Score = 305 bits (782), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 156/329 (47%), Positives = 213/329 (64%), Gaps = 8/329 (2%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS 60 MP+ + + RF VAPM+DWT CR R+L LY+EM+TTGAI+ G Sbjct: 1 MPDNS----AWRFCVAPMMDWTTPACRQIHRILLPKARLYSEMITTGAILFGDAQRYLTH 56 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 + + P ALQLGGS+P LA+ +A++ Y E+NLNVGCPSDRVQN GACLM + +LV Sbjct: 57 QNDEPCALQLGGSNPDELARATAIAQSYHYAEMNLNVGCPSDRVQNNQIGACLMKSPRLV 116 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 A C+ AM+ +PV++K R+GID+QD + + DF++ +S + C +FI+HARKAWLSGL Sbjct: 117 AQCLTAMQKESDVPVSIKHRLGIDEQDEH-LVFDFVDQISQESPCRIFIVHARKAWLSGL 175 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNP 240 SPKENR PPL Y VY++K FP LT+ INGGI + + HL ++DGVM+GR AYQ P Sbjct: 176 SPKENRTAPPLHYEIVYKIKEQFPELTIIINGGIDFIAACQNHLHYVDGVMLGRAAYQQP 235 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 +L A R +FG D +V + + L +G L TRH+LGLF G GA++ Sbjct: 236 QLLLAA-RALFG--DAVMSETEIVPQITQLLMNALDRGERLHDYTRHLLGLFHGKNGAKR 292 Query: 301 WRRYLSENAHKAGADINVLEHALKLVADK 329 +R+ LSE A +AG+DINV + AL +A + Sbjct: 293 FRQILSECAPRAGSDINVWQQALAAMAPQ 321 >UniRef50_A6U9Y2 Dihydrouridine synthase DuS n=3 Tax=Rhizobiaceae RepID=A6U9Y2_SINMW Length = 385 Score = 305 bits (780), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 164/354 (46%), Positives = 213/354 (60%), Gaps = 41/354 (11%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQLG 71 F+VAPM+DWTDRH R+F R+LSR+ LLYTEM+ A++ G + L + EHPVALQLG Sbjct: 22 FAVAPMIDWTDRHYRFFARVLSRHALLYTEMIVADAVLRGDRAKLLGHDASEHPVALQLG 81 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G+DP +A+ A++ EA GYDEIN+NVGCPSDRVQ+G FGACLM LVADC+ AM+ V Sbjct: 82 GNDPVKMAEAARIGEAYGYDEINMNVGCPSDRVQSGTFGACLMQEPALVADCIAAMKAAV 141 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 IPVTVK RIG+DDQD L D + G ++ +HARKAWL GLSP+ENREIPPL Sbjct: 142 EIPVTVKCRIGVDDQDPEVALRDLVKCAKDAGTDGVW-VHARKAWLQGLSPRENREIPPL 200 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--------------------HMDGVM 231 DY V++LK + L + INGG++ L++A +HL +DGVM Sbjct: 201 DYGLVHRLKAENESLFIGINGGLQGLDQALSHLDPRSLPAGEAMKAATEIKSGAPLDGVM 260 Query: 232 VGREAYQNPGILAAVD----REIFGSSDTDADP---------------VAVVRAMYPYIE 272 +GR AY + G+L A D + G++ DP V M Y Sbjct: 261 LGRAAYHDSGLLTAADGYFRHPLTGAAAVPTDPDGFSDRDHNLSLEFWSGVRDVMEDYAA 320 Query: 273 RELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLV 326 + G L H+TRHM+GLFQG PGAR++R+ LS A + A V+ A V Sbjct: 321 AHIENGGRLIHVTRHMVGLFQGWPGARRYRQILSTRATRKDAGPEVIHTAFDAV 374 >UniRef50_Q04VP3 TRNA-dihydrouridine synthase n=4 Tax=Leptospira RepID=Q04VP3_LEPBJ Length = 339 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 155/300 (51%), Positives = 199/300 (66%), Gaps = 4/300 (1%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQLGG 72 S+APM+D TDRH RYFLRL+S++T LYTEM+ TGAI+HG + +L+YS EE P+A+QLGG Sbjct: 15 SLAPMMDRTDRHFRYFLRLISKHTFLYTEMIHTGAILHGDRRRFLSYSPEELPLAIQLGG 74 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 +P ALA+ +K+ E GY EINLNVGCPSDRV+ G FGACLM + VA+ V AM VS Sbjct: 75 DNPKALAESSKIGEDYGYSEINLNVGCPSDRVREGNFGACLMETPERVAELVCAMDGNVS 134 Query: 133 IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLD 192 IPVTVK RIGI +++ E LC FI V G FI+HAR A L GLSP +NR+IPPL Sbjct: 135 IPVTVKCRIGISGKETLEDLCRFIECVRQAG-VRRFIVHARIAILGGLSPAQNRQIPPLR 193 Query: 193 YPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFG 252 Y V LK++FP L + INGGI++L E + L+ DGVM+GR AY+ P + + VD F Sbjct: 194 YAHVESLKKEFPDLLIEINGGIRTLAEMQDRLKTNDGVMIGRAAYETPYLFSEVDSLFFH 253 Query: 253 SSDTDADPVAVVRAMYPYIEREL--SQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAH 310 + V+ M YIE + + H RHMLGLF G GAR +RR ++E + Sbjct: 254 DNSPSLSRREVLLRMRDYIEEVVLKEKNGKPHHALRHMLGLFHGEKGARSFRRVVTERMY 313 >UniRef50_Q5ZVH8 Zinc binding TIM barrel protein, YjbN family n=6 Tax=Legionella RepID=Q5ZVH8_LEGPH Length = 334 Score = 291 bits (744), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 139/298 (46%), Positives = 202/298 (67%), Gaps = 8/298 (2%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQL 70 + S+APM+DWT+ R +RLL+ N LLYTEM TTGA+ + L ++ EHP+A+QL Sbjct: 11 SKLSIAPMIDWTNSPFRTLMRLLAPNALLYTEMQTTGAVQNNPDRALYFNSVEHPLAIQL 70 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG+D +AL +CA +AE +G++EINLN+GCPSD+VQ G FGACLM + VADC++A++ V Sbjct: 71 GGADKSALVKCAIIAEQKGFNEINLNLGCPSDKVQAGRFGACLMKEPEHVADCIRAIKQV 130 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 V IPVT KTRIGID+QDSYEF F + G C+ IIHARKAWL+GL+PK+NR IPP Sbjct: 131 VGIPVTAKTRIGIDNQDSYEFFRSFSLHLVEAG-CDKLIIHARKAWLNGLNPKQNRTIPP 189 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 ++Y VY+LK++ PH+ ++ING I ++EE HL+H+DGVM+GR A NP +A + + + Sbjct: 190 VNYDYVYELKKEIPHIFITINGNILTVEEINNHLKHVDGVMLGRLACDNPYQIAEIHQAL 249 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQ---GTYLGHITRHMLGLFQGIPGARQWRRYL 305 + + + + + Y++ Q L + + + L G+PGA+ W++ L Sbjct: 250 Y----PEFIKIKRSQLLMNYLDYWFDQSRANLSLSILVKPLFNLAFGLPGAKHWKKKL 303 >UniRef50_B7J4N8 tRNA-dihydrouridine synthase A n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7J4N8_ACIF2 Length = 330 Score = 288 bits (738), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 150/297 (50%), Positives = 196/297 (65%), Gaps = 10/297 (3%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD--YLAYSEEEHPVALQL 70 SVAPMLDWTDRHCRYFLRL+ + +LYTEMVTT A++ G+ +L +S EHP+ LQL Sbjct: 19 LSVAPMLDWTDRHCRYFLRLVCPSCVLYTEMVTTSALLLGRDPERFLEFSGAEHPLILQL 78 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG DP A+ ++A A GYD +NLNVGCPS RVQ G FGACLM LVA+ V AM + Sbjct: 79 GGDDPHAMHAAGRMARAYGYDGLNLNVGCPSPRVQKGSFGACLMTTPDLVAELVAAMGES 138 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 +PV+VK R+G+D ++ Y L F+ TV+ G C FI+HAR AWL GLSP ENR++PP Sbjct: 139 -GLPVSVKHRLGLDREEDYAALRAFVETVATAG-CRHFIVHARNAWLKGLSPAENRDVPP 196 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L + V+QLKRD PHLT+ INGG L A +DGVM+GR AY +P +LA ++R + Sbjct: 197 LRWDWVHQLKRDLPHLTIEINGGFNDLAAVTAQFSAVDGVMLGRAAYHHPLLLAEIERAL 256 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTYL--GHITRHMLGLFQGIPGARQWRRYL 305 G +T +P ++ + Y ER G +L ++RH+ GL G GA WRR+L Sbjct: 257 -GRRETLPEPEVILSGLIAYAER---WGEWLPAPRLSRHLHGLRFGQRGAGAWRRFL 309 >UniRef50_Q5SMC7 tRNA-dihydrouridine synthase n=3 Tax=Thermus RepID=Q5SMC7_THET8 Length = 342 Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 149/316 (47%), Positives = 208/316 (65%), Gaps = 9/316 (2%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-YLAYSEEEHPVALQL 70 R SVAPM+D TDRH R+ +R +S LYTEM A++ G + LA+ EEHP+ALQL Sbjct: 5 RLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQL 64 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GSDP +LA+ A++ EA GYDEINLN+GCPS++ Q G +GACL+ + V + +KAM + Sbjct: 65 AGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEA 124 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 V +PVTVK R+G++ +++Y L + ++ G ++F++HAR A L+ LS K NREIPP Sbjct: 125 VRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAG-VKVFVVHARSALLA-LSTKANREIPP 182 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L + V++LK DFP LT NGGI+SLEEA HL+ +DGVM+GR Y++P +L DR + Sbjct: 183 LRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLKRVDGVMLGRAVYEDPFVLEEADRRV 242 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAH 310 FG + + V R M Y+E E+ +GT + RHML LF+G P R WRR LSE Sbjct: 243 FGLPRRPSR-LEVARRMRAYLEEEVLKGTPPWAVLRHMLNLFRGRPKGRLWRRLLSE--- 298 Query: 311 KAGADINVLEHALKLV 326 G + L+ AL+L+ Sbjct: 299 --GRSLQALDRALRLM 312 >UniRef50_Q87AY2 tRNA-dihydrouridine synthase A n=15 Tax=Bacteria RepID=DUSA_XYLFT Length = 332 Score = 285 bits (729), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 168/329 (51%), Positives = 219/329 (66%), Gaps = 11/329 (3%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSE 61 EK + R SVAPM++WTDR+CR F R+L+ + LYTEMV A+I+G + L ++ Sbjct: 8 EKQGISGDFRLSVAPMMNWTDRYCRVFHRVLAPSARLYTEMVHAKAVIYGDRERLLGFAS 67 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E PVALQLGGS+PA LA+ A +A GY EINLN GCPSDRVQ G FGACLM LVA Sbjct: 68 VEQPVALQLGGSEPALLAKAASIAVDWGYSEINLNCGCPSDRVQAGSFGACLMREPALVA 127 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 DCV AM VVS+PVTVK R+G+++ D Y F++ V G M ++HAR AWL GLS Sbjct: 128 DCVAAMAAVVSVPVTVKCRLGVNEDDDYGRFAKFVDWVIGASSSRMIVVHARNAWLQGLS 187 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPG 241 PKENREIPPL Y VY+LKR+ P L + +NGGI S+E HL +DGVM+GR AYQ+P Sbjct: 188 PKENREIPPLRYDWVYRLKRECPELAVVLNGGITSVEAGLDHLLMVDGVMLGRAAYQDPY 247 Query: 242 ILAAVDREIFGSSDTDADPV----AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 IL F + ++A PV ++RA+ PY+E L QG L HI RH+LGLF G PG Sbjct: 248 ILHQ-----FYCALSNA-PVLPRALLLRALRPYVEAWLEQGVTLRHIVRHLLGLFHGQPG 301 Query: 298 ARQWRRYLSENAHKAGADINVLEHALKLV 326 R +R+ L++ ++ AD +++E AL ++ Sbjct: 302 GRVFRQVLTQGGQRSDADWSLVEQALSII 330 >UniRef50_C6XGY7 tRNA-dihydrouridine synthase A n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XGY7_LIBAP Length = 322 Score = 284 bits (726), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 148/322 (45%), Positives = 204/322 (63%), Gaps = 13/322 (4%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQLGGSDPA 76 M+DWTDRH R+F RLL+ N LLYTEM+ AI+ G K + L +S +E P+ALQ+GG+D + Sbjct: 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADIS 60 Query: 77 ALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVT 136 L + AK+ E GY+EINLNVGCPS RV G FGACLM N +V DC+ AM +SIPVT Sbjct: 61 KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVT 120 Query: 137 VKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRV 196 VK RIG+DDQ L + + ++ G ++ IHARKA L GLSPK+NR+IP LDY V Sbjct: 121 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIW-IHARKAILKGLSPKDNRKIPNLDYDIV 179 Query: 197 YQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDT 256 Y++K++ P L + +NGG++ + +A L +DGVM+GR AY+N +L VD E F + T Sbjct: 180 YEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVD-EYFSNPLT 238 Query: 257 DADPV----------AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLS 306 + P+ + +M Y R L G L ITRHM+GLF G P +R+ R L+ Sbjct: 239 GSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILT 298 Query: 307 ENAHKAGADINVLEHALKLVAD 328 A + A +++E A L+ + Sbjct: 299 VEAGASTATHHIIETAFNLMIE 320 >UniRef50_A0EAZ6 Chromosome undetermined scaffold_87, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0EAZ6_PARTE Length = 346 Score = 283 bits (724), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 142/321 (44%), Positives = 207/321 (64%), Gaps = 11/321 (3%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI-----IHGKGDYLAYSEEEHPV 66 + S+APM+D T H R F RLL++N +LYTEM+ AI + L YS+ EHPV Sbjct: 8 KISIAPMIDITYEHFRVFFRLLTKNCVLYTEMIHENAINLSRVLKPFPLVLDYSQVEHPV 67 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 QLGG+DP LA+ A++AE G+DEINLNVGCPS+RVQ+G FGACLM LVA C+K Sbjct: 68 VCQLGGNDPEKLAKAAQIAEQAGFDEINLNVGCPSERVQDGAFGACLMKEPHLVAQCMKK 127 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 M++ V IP T+K R+G+D+ DSYEF+ +F+ V +GE FI+HARKA+L GL+P ENR Sbjct: 128 MKEAVKIPCTLKCRLGVDNLDSYEFVRNFVEIVYKEGEVNHFIMHARKAFLKGLNPHENR 187 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAV 246 +PPL Y VYQLK++FP + ++NGGIK E L ++DG+M+GR A++NP + + Sbjct: 188 TVPPLKYDWVYQLKKEFPEIKFTLNGGIKCTEHIDQVLPNVDGIMIGRSAHENPWMFSDF 247 Query: 247 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLG--HITRHMLGLFQGIPGARQWRRY 304 DR +G + + + ++ ++E + + G + + ++ LF G +++R++ Sbjct: 248 DRLYYGGENQNYNRKEILEQYAEFVEEKRATGCKVSTQMCVKPIINLFNGESNNKRYRQF 307 Query: 305 LSE-NAHKAGAD--IN-VLEH 321 LS + HK G IN V+EH Sbjct: 308 LSNTDNHKLGFRGMINQVIEH 328 >UniRef50_B1XUD8 Dihydrouridine synthase DuS n=2 Tax=Polynucleobacter necessarius RepID=B1XUD8_POLNS Length = 362 Score = 280 bits (716), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 147/320 (45%), Positives = 204/320 (63%), Gaps = 24/320 (7%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHPVALQL 70 R +VAPM++WTDRHCR F R L++ +LYTEMVTTGA++HG +L YS+++HPV LQL Sbjct: 10 RLAVAPMMEWTDRHCRSFHRALTKKAVLYTEMVTTGALMHGDVPRHLDYSQDQHPVILQL 69 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GGS+P LA+ A+LA+ GYDEI+LN GCPS+R+Q G FGACLM LVA+CVK+M+ Sbjct: 70 GGSEPNDLAKSAELAQQWGYDEIDLNCGCPSERMQRGAFGACLMAEPNLVAECVKSMKSA 129 Query: 131 VSIPVTVKTRIGIDDQDS------YEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 V +P++VK R+G+D D+ Y+F +FI V+ G ++ IHAR A L GLSPKE Sbjct: 130 VDVPISVKHRLGLDSMDAAHSEADYQFALNFILAVADAGASQV-TIHARNAVLKGLSPKE 188 Query: 185 NREIPPLDYPRVYQLKRD----FPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNP 240 NR PPL Y +L+ D FP L + +NGG+++ E+ H DG MVGR AY P Sbjct: 189 NRSRPPLRYEVAAKLRLDAQIHFPKLKVLLNGGLETNEQIAGHWNGFDGFMVGRAAYHFP 248 Query: 241 GILAAVDREI----------FGSSDTDADPVAVVRAMYPYIERELSQGT--YLGHITRHM 288 +L D I F S+ +A+V+ ++ + + S+G Y+G TRH+ Sbjct: 249 ALLLGWDDMITTDGDAAGYLFSESEWHRIQIALVKQVHAWFDECQSKGKPFYIGVFTRHI 308 Query: 289 LGLFQGIPGARQWRRYLSEN 308 LGL G G+R WR+ LS++ Sbjct: 309 LGLAHGRAGSRYWRQRLSDH 328 >UniRef50_Q22A31 TIM-barrel protein, yjbN family n=2 Tax=cellular organisms RepID=Q22A31_TETTH Length = 466 Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 136/305 (44%), Positives = 203/305 (66%), Gaps = 8/305 (2%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEEHPVALQL 70 +VAPM+D TD H R F+RLL+R ++LYTEM+ A+ H G ++L + +HPV +QL Sbjct: 91 AVAPMIDITDVHFRNFIRLLTRYSILYTEMIHEQAVHHNIRGPQEFLRFDPVQHPVVIQL 150 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG+DP LA+ AK+ E GYDE+NLNVGCPSDRVQ+G FGACLM +LVA+ ++ M++ Sbjct: 151 GGNDPDNLAKAAKICEEIGYDEVNLNVGCPSDRVQSGKFGACLMKEPELVAEIMRKMKEA 210 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 SIPVTVK R+G+D+ DSYEF DFI TVS KG+ + F++HARKA+L GL+P +NR +PP Sbjct: 211 CSIPVTVKCRLGVDNFDSYEFARDFIKTVSEKGQVQHFVVHARKAFLKGLNPAQNRNVPP 270 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGV---MVGREAYQNPGILAAVD 247 L Y V +LK++FPHL SINGG K+ ++ L+ +G+ M+GR AY+ P + + +D Sbjct: 271 LKYDYVLRLKQEFPHLHFSINGGFKTYDQISDILKQENGLHGCMLGRAAYETPWLFSDMD 330 Query: 248 REIFGSSDTDADPVAVVRAMYPYIERELSQ--GTYLGHITRHMLGLFQGIPGARQWRRYL 305 R FG + +++ Y + + Q + + + ++ LF G + ++R ++ Sbjct: 331 RRYFGKQNPGFSRREILQIWGQYGKLVIQQQPAISIPTLNKPIINLFAGEKHSAKYRHFI 390 Query: 306 SENAH 310 S+ A+ Sbjct: 391 SDRAN 395 >UniRef50_D1AMN2 Dihydrouridine synthase DuS n=3 Tax=Bacteria RepID=D1AMN2_SEBTE Length = 337 Score = 271 bits (692), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 138/325 (42%), Positives = 195/325 (60%), Gaps = 15/325 (4%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-YLAYSEEEHPVALQLG 71 SVAPM+D TDR+ R F+R+++++ LLYTEMVT AIIHG + L + E EHP+ALQ+ Sbjct: 8 ISVAPMVDKTDRYFRNFVRMINKDVLLYTEMVTAQAIIHGDLERILGFDEAEHPIALQIA 67 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 + P + K AE YDEINLNVGCPSDRV M GACLM +LV D +KA+++ Sbjct: 68 ATTPEDAYKAVKTAENYAYDEINLNVGCPSDRVSGNMMGACLMAYPELVLDILKAIKEAT 127 Query: 132 SIPVTVKTRIGIDDQ------------DSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 VT+K RIGID + D YE + +FIN + G + + +HAR A L+G Sbjct: 128 GKAVTIKHRIGIDGKGILPDNAEKTLFDKYEDMLNFINIIEKAG-ADRYTVHARIAVLAG 186 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQN 239 L PK+NRE+PPL Y VY+LK + P++ + INGGIK+ E+ HL+++DGVM+GRE Y N Sbjct: 187 LDPKQNREVPPLRYDEVYRLKAEKPYMQIEINGGIKTKEDITEHLKYVDGVMIGREFYDN 246 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGAR 299 P +LA V+ + + + + V+ M PY+E+ RH LGLF + G++ Sbjct: 247 PMLLAEVN-SFYNNGEENISRYQVLEKMIPYLEKMEMNNERTHLFLRHTLGLFHNVKGSK 305 Query: 300 QWRRYLSENAHKAGADINVLEHALK 324 W+ +S K ++ LK Sbjct: 306 YWKNSISSQNLKNNKGSLIIREILK 330 >UniRef50_C6NVP5 tRNA-dihydrouridine synthase A n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVP5_9GAMM Length = 335 Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 139/295 (47%), Positives = 182/295 (61%), Gaps = 6/295 (2%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD--YLAYSEEEHPVALQL 70 SVAPMLDWTDRHCRYFLRL+ + +LYTEM+ T A++ GK YLA++ E P+ LQL Sbjct: 17 LSVAPMLDWTDRHCRYFLRLICPSCVLYTEMIHTSALVLGKSPERYLAFTAAEQPLVLQL 76 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG DP A+A+ A LA GY +NLNVGCPS RVQ G FGACLM LV + + A+ Sbjct: 77 GGDDPEAMARAAILARDYGYTGVNLNVGCPSTRVQRGNFGACLMLTPALVREIIDALAGS 136 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 +PV+VK R+G+D Q+ Y L DF+ V+ G C F++HAR AWL GLSP NR IPP Sbjct: 137 -GLPVSVKHRLGLDRQEDYGQLADFVAQVAA-GSCRHFVVHARNAWLRGLSPAANRTIPP 194 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L + V +LK DFP L +NGG+ ++ + +A +DGVM+GR AY P L ++ + Sbjct: 195 LRWDWVARLKEDFPGLRFELNGGLDTVPKVEAQWSRVDGVMIGRAAYHRPLFLTELELAL 254 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL 305 G A V A+ Y E + +TRH+ G F G PGA WR++L Sbjct: 255 -GRRQAPARRAEVFAALLAYTE-DWGAALPAPRLTRHLHGFFFGEPGANAWRQFL 307 >UniRef50_Q056Y8 TRNA-dihydrouridine synthase A n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q056Y8_BUCCC Length = 348 Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 126/300 (42%), Positives = 190/300 (63%), Gaps = 2/300 (0%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE-EHPVA 67 +S +FSVAPM +TD+HC YF R L++ T LYTEM+T ++ K + + +P+A Sbjct: 27 YSNKFSVAPMFKYTDQHCLYFYRQLTKKTFLYTEMITIQKMLFSKKLFKKKQIKKNNPIA 86 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +QL G++P L+ CAK A G+ EINLN+GCPS + ++G FG LM N LV + +KA+ Sbjct: 87 IQLAGNNPLFLSLCAKKAYFLGFKEINLNIGCPSKKAKSGNFGIYLMNNPILVYNLIKAI 146 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 V I +++K R+G ++ +Y FL +FI VS C +IIHAR A L SPK+NR Sbjct: 147 YLTVPIQISIKIRLGTNENKNYRFLKNFIQLVSKNNYCIKYIIHARIANLQINSPKKNRN 206 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 247 IP L+Y VY++K+DFPHL + INGGIK++ E HL+++DGVM+GRE Y+NP L +D Sbjct: 207 IPLLNYSYVYKIKKDFPHLIIIINGGIKTINEINEHLKNVDGVMMGREIYKNPLFLRKID 266 Query: 248 REIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 ++I ++ M YI++++ +G I +HML +F +P A++W+ L + Sbjct: 267 KKI-FFQKKQIKIKKFIKKMSNYIKKKIIKGVPAIKIIKHMLNIFYKLPQAKKWKHELIQ 325 >UniRef50_C9MVS9 tRNA dihydrouridine synthase A n=2 Tax=Leptotrichia RepID=C9MVS9_9FUSO Length = 332 Score = 258 bits (658), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 131/318 (41%), Positives = 190/318 (59%), Gaps = 16/318 (5%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY-LAYSEEEHPVAL 68 + S+APM+D TDR+ R F+R+++++ LLYTEM+T A+++G DY L + E EHP+ L Sbjct: 7 KNKISIAPMVDRTDRNFRNFVRMINKDVLLYTEMITAQAVLNGDLDYILGFDEVEHPIVL 66 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ ++P Q K+AE YDEINLNVGCPSDRV M GA LM + VA+ VK+M+ Sbjct: 67 QIAATNPKEAYQAVKIAEKYNYDEINLNVGCPSDRVSGNMMGAYLMAFPEEVANIVKSMK 126 Query: 129 DVVSIPVTVKTRIGIDDQ------------DSYEFLCDFINTVSGKGECEMFIIHARKAW 176 D PV+VK RIGID + D YE + +FI +++ + +IIHAR A Sbjct: 127 DATGKPVSVKHRIGIDGKNVLPNSFKRTLLDKYEDMENFI-SITKQAGVSKYIIHARIAI 185 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREA 236 L+GL PK+NR IPPL Y VY++K+D P L + INGGIK++EE HL+++D M+GRE Sbjct: 186 LAGLDPKQNRSIPPLRYDEVYRVKKDNPDLHIEINGGIKTVEEIDEHLKYVDSAMLGREI 245 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 Y NP IL + + + + ++ M Y+E Q H GLF + Sbjct: 246 YDNPMILTEFGK--YYGKEINITRKEIIEKMIYYVENMEKQQLRPHLFLMHAHGLFHNVR 303 Query: 297 GARQWRRYLSENAHKAGA 314 G++ W+R ++E +G Sbjct: 304 GSKAWKRAINEPKANSGT 321 >UniRef50_A7AWB5 Dihydrouridine synthase (Dus) domain containing protein n=1 Tax=Babesia bovis RepID=A7AWB5_BABBO Length = 362 Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 146/332 (43%), Positives = 204/332 (61%), Gaps = 26/332 (7%) Query: 6 DVHWSGR------FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---- 55 D SGR +APMLD T R F+RL+++ L+TEM+ G++I+G D Sbjct: 5 DADISGRSHDRPLVQIAPMLDITYYEFRQFMRLITKRAQLWTEMMADGSLIYGDSDKVGS 64 Query: 56 YLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLM 114 L EHP+ LQLGG++ +L++ +A GY E NLNVGCPS RV G FGA LM Sbjct: 65 MLHCDANEHPIVLQLGGNNLDSLSKAGNIALGYGYTEFNLNVGCPSTRVSGKGCFGAALM 124 Query: 115 GNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK 174 +A LV VK +R + PVTVK R+G+D DSYEF+ DFI+TV+ +G C FI+HARK Sbjct: 125 NDAPLVGRIVKHLRSELGTPVTVKHRLGVDHNDSYEFVRDFISTVADQG-CTDFIVHARK 183 Query: 175 AWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVG 233 AWL+G++P++NR IPPLD+ RVY+L ++FP+L +SINGGIKSLEE K L + GVMVG Sbjct: 184 AWLNGINPRKNRSIPPLDHERVYRLCQEFPNLNISINGGIKSLEEIKYALSRGVYGVMVG 243 Query: 234 REAYQNPGILAAVDREIFGSSDTDADPVA---VVRAMYPYIERELSQGTYLG--HITRHM 288 R AY+NP L VD +I+G + A ++ +I+ + S+ + + + + + Sbjct: 244 RMAYENPCGLVRVDTDIYGEATNPATCKTRRILLETYANFIDSQASRTSDMNVCMLVKPI 303 Query: 289 LGLFQGIPGARQWRRYLSENAHKAGADINVLE 320 LG F G G + +R+ LS D+NV E Sbjct: 304 LGTFHGEVGTKIFRQALS--------DMNVYE 327 >UniRef50_C7NAG3 Dihydrouridine synthase DuS n=1 Tax=Leptotrichia buccalis C-1013-b RepID=C7NAG3_LEPBD Length = 331 Score = 249 bits (637), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 130/320 (40%), Positives = 192/320 (60%), Gaps = 19/320 (5%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG-DYL-AYSEEEHPVA 67 + S+APM+D TDR+ R F+R+++++ LLYTEM+T AII+ K +YL + + E+P+ Sbjct: 5 KNKISIAPMVDRTDRNFRNFVRMINKDVLLYTEMITAQAIINTKDLNYLLGFDKIENPIV 64 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 LQ+ ++P + K+AE YDEINLN+GCPSDRV M GA LM ++VAD +KAM Sbjct: 65 LQIAATNPKEAYEAVKIAEKYDYDEINLNIGCPSDRVSGNMMGAYLMAFPEVVADIIKAM 124 Query: 128 RDVVSIPVTVKTRIGIDDQ------------DSYEFLCDFINTVSGKGECEMFIIHARKA 175 +D + P+++K RIGID + D YE + +FIN ++ K +IIHAR A Sbjct: 125 KDATNKPISIKHRIGIDGKNILPDYFERTLLDKYEDMMNFIN-ITKKTGVNKYIIHARIA 183 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGRE 235 L+GL PK+NR IPPL Y VY++K++ P L + ING IKS++E HL++ D VM+GRE Sbjct: 184 VLAGLDPKQNRSIPPLRYDEVYRVKKENPDLHIEINGEIKSVDEIDEHLKYTDSVMMGRE 243 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 Y NP IL + + D + ++ M Y+E Q H GLF + Sbjct: 244 IYDNPMILTEFGK--YYGKDINITREEIIEKMIYYVENMERQNIRPHLFLMHTHGLFHNV 301 Query: 296 PGARQWRRYLSENAHKAGAD 315 G++ W+R + N KA ++ Sbjct: 302 RGSKFWKRAI--NNPKANSE 319 >UniRef50_B6KL93 Dihydrouridine synthase domain-containing protein n=3 Tax=Toxoplasma gondii RepID=B6KL93_TOXGO Length = 394 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/328 (44%), Positives = 188/328 (57%), Gaps = 39/328 (11%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVALQ 69 SVAPML T+ H R F+R +R L+TEMVT GAI++ L + EHP+ Q Sbjct: 15 LSVAPMLAVTNTHFRNFMRCFTREAQLWTEMVTDGAILNNMDRLQQNLCLEDIEHPIVCQ 74 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRV-QNGMFGACLMGNAQLVADCVKAMR 128 LGGSDP LA+ KL E G+DEINLNVGCPS+RV G FGA LM + V D V +R Sbjct: 75 LGGSDPKTLAEAGKLIEKLGFDEINLNVGCPSNRVVSQGCFGAALMKTPETVRDIVHEIR 134 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 V IPVTVKTRIG D DS + L +F+ TVS G C FI+HARKAWL G+ PK+NR + Sbjct: 135 RHVQIPVTVKTRIGYDHCDSRDVLRNFVQTVSAGG-CRHFIVHARKAWLKGVDPKKNRSV 193 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA------------------------KAHL 224 PPL Y RVY L FPHL S+NGG++S+++A + Sbjct: 194 PPLLYGRVYDLCDQFPHLDFSLNGGVRSIQQAIDLAAGKWTDGTAEMDALLRRITRDKTV 253 Query: 225 QHMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPV------AVVRAMYPYIERELSQG 278 + + GVM+GR A +P ILA VD + +G+ DA+P V+ A YI+ G Sbjct: 254 KPLRGVMLGRAASADPCILANVDTDFYGA---DANPPTSHSRRTVLEAYRNYIKPFAEDG 310 Query: 279 TYLGH-ITRHMLGLFQGIPGARQWRRYL 305 Y + + +LG+F G+PG R +R L Sbjct: 311 EYSHFALLKPVLGVFNGMPGNRLFRFTL 338 >UniRef50_Q4N9T6 TRNA-dihydrouridine synthase A, putative n=2 Tax=Theileria RepID=Q4N9T6_THEPA Length = 471 Score = 243 bits (620), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 140/358 (39%), Positives = 199/358 (55%), Gaps = 53/358 (14%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFL----------RLLSRNTLLYTEMVTTGAII 50 M T H +APMLD T H RYF+ RLL+R T L+TEM ++I Sbjct: 74 MRNGTVSHSKPSLQIAPMLDVTYLHFRYFMDFKFDFRQFMRLLTRKTQLWTEMFVASSLI 133 Query: 51 HGKGD----YLAYSEEEHPVALQLG----------GSDPAALAQCAKLAEARGYDEINLN 96 + + +L + E EHP+ QLG G+ P L + ++ + GYDEINLN Sbjct: 134 NASNESVSRWLKFEENEHPIVAQLGIFYQHKIVPGGNCPETLVEAGRILKKFGYDEINLN 193 Query: 97 VGCPSDRVQN-------------GMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGI 143 GCPS RV G FGA LM +LV D M + +PVTVKTR+G+ Sbjct: 194 AGCPSPRVSGKGIYKFMLKLFNLGCFGASLMKEKELVRDIAHHMLRELEMPVTVKTRLGV 253 Query: 144 DDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDF 203 D+ DSYEF+ DF++TVS G C+ FIIH+RKAWL G++PK+NR IPPL Y +VY+L+RDF Sbjct: 254 DEFDSYEFVRDFVSTVSESG-CDHFIIHSRKAWLKGINPKQNRTIPPLQYEKVYRLQRDF 312 Query: 204 PHLTMSINGGIKSLE-----------EAKAHLQHMDGVMVGREAYQNPGILAAVDREIFG 252 PHL +INGG K++E ++ + ++GVM+GR AY+NP +L+ VD+ I+G Sbjct: 313 PHLKFTINGGFKTMESILEALNSENLDSNNNPHKLNGVMIGRLAYENPCLLSNVDKLIYG 372 Query: 253 --SSDTDADPVAVVRAMYPYIEREL--SQGTYLGHITRHMLGLFQGIPGARQWRRYLS 306 + DT ++ YI+ + + I + +LG+F G G + +R+ LS Sbjct: 373 VENPDTCYTRRILLENYANYIDENQVDTANLNISLIVKPILGVFHGEQGNKIFRQSLS 430 >UniRef50_Q0JEG3 Os04g0278900 protein n=3 Tax=Oryza sativa RepID=Q0JEG3_ORYSJ Length = 368 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 128/296 (43%), Positives = 180/296 (60%), Gaps = 10/296 (3%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 74 M+DWTD H R RL+S++ LYTEMV I+H K + +LA+ E+HP+ LQ+GGS+ Sbjct: 1 MMDWTDNHYRTLARLISKHAWLYTEMVVAETIVHQKDNLDRFLAFPAEQHPIVLQIGGSN 60 Query: 75 PAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSI 133 LA+ +LA A YDEINLN GCPS +V +G FGA LM + + V D + A+ ++ Sbjct: 61 LDNLAKATELANAYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAIAANCNV 120 Query: 134 PVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 193 PV+VK RIG+DD+DSYE LC+F++ V K FIIHARKA LSGLSP ENR +PPL Y Sbjct: 121 PVSVKCRIGVDDRDSYEELCEFVDKVVSKSPTRHFIIHARKALLSGLSPAENRNVPPLKY 180 Query: 194 PRVYQLKRDFPHLTMSINGGIKSLEEAKAHL-QHMDGVMVGREAYQNP-GILAAVDREIF 251 + L RDFP + ++NGGI ++++ A + Q VMVGR AY NP +L VD E++ Sbjct: 181 EYYFALLRDFPDVQFTLNGGITTIDQVTASIRQGAHRVMVGRAAYNNPWNMLGHVDSEVY 240 Query: 252 GSSDTDADPVAVVRAMYPYIERELSQ----GTYLGHITRHMLGLFQGIPGARQWRR 303 G + ++ + Y + + Q + + + +L LF PG W+R Sbjct: 241 GMPTRRSSRRQILESYQVYGDSIMGQYGPSRPNVRQLVKPLLNLFHSEPGNGLWKR 296 >UniRef50_Q9FI41 Emb|CAB87804.1 n=16 Tax=Embryophyta RepID=Q9FI41_ARATH Length = 387 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 134/303 (44%), Positives = 178/303 (58%), Gaps = 14/303 (4%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69 FS+APM+ WTD H R RL++++ LYTEM+ I++ + + +LA+S ++HP+ LQ Sbjct: 12 FSIAPMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAFSPDQHPIVLQ 71 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMR 128 +GG + LA+ +LA A YDEIN N GCPS +V G FGA LM + + V + + + Sbjct: 72 IGGRNLENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKFVGEAMSVIA 131 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 + VTVK RIG+DD DSY LCDFI+ VS + FIIH+RKA LSGLSP +NR I Sbjct: 132 ANTNAAVTVKCRIGVDDHDSYNELCDFIHIVSSLSPTKHFIIHSRKALLSGLSPSDNRRI 191 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNP-GILAAV 246 PPL Y + L RDFP L +INGGI S+ EA A L+ GVM+GR Y NP IL V Sbjct: 192 PPLKYEFFFALLRDFPDLKFTINGGINSVVEADAALRSGAHGVMLGRAVYYNPWHILGHV 251 Query: 247 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQ 300 D ++GS + V+ Y E L G Y L I R ++ LF G Q Sbjct: 252 DTVVYGSPSSGITRRQVLEKYKLYGESVL--GKYGKGRPNLRDIVRPLINLFHSESGNGQ 309 Query: 301 WRR 303 W+R Sbjct: 310 WKR 312 >UniRef50_Q8I2W5 Dihydrouridine synthase, putative n=8 Tax=Plasmodium RepID=Q8I2W5_PLAF7 Length = 577 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 125/351 (35%), Positives = 195/351 (55%), Gaps = 38/351 (10%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVT---TGAIIHGKGDYLAYSEEEHPVALQLG 71 VAPM++ T+RH R +R++++ L+TEM+ ++ ++L + EHP+ QLG Sbjct: 202 VAPMINVTNRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEHLGFDNNEHPIVCQLG 261 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQN-GMFGACLMGNAQLVADCVKAMRDV 130 G D ++++ A L E GYDEIN+NVGCPS +V N G FGA LM N + V + V ++ Sbjct: 262 GCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPEQVRNIVYEIKKK 321 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 V IPVTVK R G+D+ DS++FL FI TVS G C FI+HARKAWL GL PK+NR+IPP Sbjct: 322 VQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVG-CNHFIVHARKAWLKGLDPKQNRKIPP 380 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA---------------------------- 222 L+Y +VY L + +PHL ++NGGI++++EA A Sbjct: 381 LEYYKVYDLCKLYPHLKFTLNGGIQTIQEAIALLNGYMPENYNNNNNNNNDTSNFIQIDN 440 Query: 223 -HLQHMDGVMVGREAYQNPGILAAVDREIFGSS--DTDADPVAVVRAMYPYIERE--LSQ 277 ++ ++G+M+GR +N +L+ D+ ++ T ++ A Y+E+ Sbjct: 441 YNINPLNGIMIGRACMENITVLSQTDKLVYNQDIPSTAYSRRTILEAYKKYLEKNSLFYN 500 Query: 278 GTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVAD 328 + + + +LG+ +G+PG R +R L + + E K +AD Sbjct: 501 LSSSFELLKPVLGILKGMPGHRIFRNKLDTYIRNYTSTLPCSEILEKAIAD 551 >UniRef50_C1FGA1 Predicted protein (Fragment) n=4 Tax=Mamiellales RepID=C1FGA1_9CHLO Length = 401 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 146/361 (40%), Positives = 196/361 (54%), Gaps = 51/361 (14%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK----GDYLAYSEEEHPVAL 68 SVAPM+D+T H R+ RLLSR+T LYTEM ++H YL + HP L Sbjct: 7 LSVAPMMDYTTAHFRHLCRLLSRHTWLYTEMEVDQTLVHTDHPRLDRYLDFPTATHPSVL 66 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAM 127 QLGGSDP +A+ +A GYDEINLN GCPS +V G FGA LM +LV D V AM Sbjct: 67 QLGGSDPETMARATAVAAPYGYDEINLNCGCPSPKVAGKGAFGAALMLEPELVRDVVAAM 126 Query: 128 RDVVS-IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEM----------FIIHARKAW 176 R+ PVTVK RIG+DD DSY+ LC F+ TV+ C M F IHARKA Sbjct: 127 RENSGGAPVTVKCRIGVDDHDSYDDLCRFVETVA----CAMVPTRTDGRPLFAIHARKAL 182 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ---------HM 227 L+GLSP ENR +PPL Y Y L RDFP + +NGGI +LEEA + + Sbjct: 183 LAGLSPAENRTVPPLRYEWAYALARDFPEVAFVVNGGIDTLEEAAEVARGVGVPTGGGRL 242 Query: 228 DGVMVGREAYQNP-GILAAVDREIFGSSDTDADPVAVVRAMY-PYIER--------ELSQ 277 G M+GR + +P G+L+ D +FG+ +++P R + Y++ ++ Sbjct: 243 VGTMIGRAVHADPWGVLSDADVRVFGA---ESNPRTSRRDLLNEYVKYCDATRGRFGTTK 299 Query: 278 GTYLGHITRHML----GLFQGIPGARQWRRY----LSENAHKAGADI-NVLEHALKLVAD 328 Y TRH++ LF G P A+ WRR L E+A + ++LE L +++D Sbjct: 300 DGYSVPSTRHLMHPLQNLFLGEPNAKVWRRRVDEALKEDARNPDVTVGDILERTLGVLSD 359 Query: 329 K 329 + Sbjct: 360 E 360 >UniRef50_A8MRX7 Uncharacterized protein At3g63510.2 n=5 Tax=Arabidopsis thaliana RepID=A8MRX7_ARATH Length = 386 Score = 227 bits (578), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 129/319 (40%), Positives = 185/319 (57%), Gaps = 14/319 (4%) Query: 22 TDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSDPAAL 78 +D H R RL++++ LYTEM+ ++H + + +LA+S ++HP+ LQLGGS+ L Sbjct: 30 SDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQHPIVLQLGGSNVENL 89 Query: 79 AQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTV 137 A+ AKL++A GYDEINLN GCPS +V +G FG LM +LV + + A+ ++PVTV Sbjct: 90 AKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTV 149 Query: 138 KTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVY 197 K RIG+D+ DSY+ LCDFI VS FI+H+RKA L G+SP +NR IPPL Y Y Sbjct: 150 KCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYY 209 Query: 198 QLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNP-GILAAVDREIFGSSD 255 L RDFP L +INGGI S+ + A L+ GVMVGR AY NP L VD ++G Sbjct: 210 ALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQTLGQVDTAVYGVPS 269 Query: 256 TDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPGARQWRRYLSENA 309 + V+ Y + L GT+ + + + +L LF G W+R Sbjct: 270 SGLTRRQVLEQYQVYGDSVL--GTHGNGRPNVRDLVKPLLNLFHSENGNSLWKRRADAAF 327 Query: 310 HKAGADINVLEHALKLVAD 328 + + ++LE +L+ + D Sbjct: 328 KECRSVGSLLEESLRAIPD 346 >UniRef50_C1E9S0 Predicted protein n=2 Tax=cellular organisms RepID=C1E9S0_9CHLO Length = 499 Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 121/268 (45%), Positives = 166/268 (61%), Gaps = 19/268 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPV 66 S R SVAPML+ TD H R RL+SR L+TEMV A++H K + LAY +EEHP+ Sbjct: 30 SHRISVAPMLECTDTHFRRVCRLVSRRAHLWTEMVNQDAVVHSWRSKPEMLAYGDEEHPL 89 Query: 67 ALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNG-----MFGACLMGNAQLV 120 +QLGG+ P LA A + +A YDEINLN GCPS+RV N FGA LM + V Sbjct: 90 TVQLGGASPERLALAATVCDAEYRYDEINLNCGCPSNRVVNKKDVATCFGAALMRDPTHV 149 Query: 121 ADCVKAMRDVVSIPVTVKTRIGI--------DDQDSYEFLCDFINTVSGKGECEMFIIHA 172 +C++ MR+ V +PVTVK R+G+ D DSY F+ +F++ V+ + FI+HA Sbjct: 150 GECLRRMREAVDVPVTVKHRLGVRPTEKSPDDSMDSYAFVSEFVDVVNQASGVKHFIVHA 209 Query: 173 RKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGV 230 R A LSGLS NR +PPL + V+ L DFP L ++NGGI+++++A HL+ + GV Sbjct: 210 RAAVLSGLSTTGNRTVPPLRHAEVHALADDFPSLGFTLNGGIETMDQAAEHLESGKLRGV 269 Query: 231 MVGREAYQNPGILAAVDREIFGSSDTDA 258 M+GR Y+NP +LA VD +G +A Sbjct: 270 MLGRAVYRNPAVLAEVDARFYGDEPREA 297 >UniRef50_B7XK29 NIFR3-like protein n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XK29_ENTBH Length = 321 Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 111/316 (35%), Positives = 183/316 (57%), Gaps = 14/316 (4%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS--EEEHPVALQ 69 + ++APM+ T R ++L++ T+LYTEM+T II+ + L + ++ +Q Sbjct: 10 KIALAPMMKVTTPCFRKLIQLIAPTTILYTEMITASTIINLNDEKLQITLGNPDNQTVVQ 69 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 +GGS+P + K + G+ NLN GCPS RVQ GMFGA LM +LV + + + Sbjct: 70 IGGSNPKDIVNAIKRLKQCGWRLFNLNCGCPSTRVQKGMFGAILMKYKELVIEIINTVYI 129 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 I +++K R GID+ DSYEFL +FI ++S C +F IHARK WL G++PK+NR IP Sbjct: 130 ETQIILSIKCRTGIDEFDSYEFLKEFIESISKNTPCNIFYIHARKCWLQGINPKQNRNIP 189 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGI--KSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 247 PL+Y ++++K++FPHL + INGGI S + K + DG+M+GREA +NP I A + Sbjct: 190 PLNYDYIFRIKKEFPHLFIGINGGITYNSYLKYKFQMDTCDGIMIGREAIKNPLIFAEI- 248 Query: 248 REIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 + + ++++ + +I E+S T + I + L +G P ++ +++ +++ Sbjct: 249 ------INMPINIQYIIQSYFKFI--EMSNFT-IYKILYPLCNLRRGKPNSKHFKQMINQ 299 Query: 308 NAHKAGADINVLEHAL 323 H +N L + L Sbjct: 300 LLHNKLITVNELSNVL 315 >UniRef50_D0NZC8 tRNA-dihydrouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NZC8_PHYIN Length = 379 Score = 213 bits (542), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 130/349 (37%), Positives = 193/349 (55%), Gaps = 34/349 (9%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVA 67 R SVAPM+DWTDRH R+ +R++++ TLL+TEMV +++ + + +L + E P+A Sbjct: 8 ARLSVAPMMDWTDRHYRFMMRMITKKTLLFTEMVVDQTLLYQRKNLDYFLGHDPAEAPLA 67 Query: 68 LQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 LQLGG+ L A L+++ G + EINLN GCPS V + FGA LM + V D + Sbjct: 68 LQLGGNSVEDLGAAAHLSQSYGGFCEINLNTGCPSALVSSRCFGARLMLEPERVRDICDS 127 Query: 127 MRDVVSIP-----------VTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 MR V++ VTVK RIG+DD DSY+ L ++ V+ G I+HARK Sbjct: 128 MRHSVALASEGNPDHPTAEVTVKCRIGVDDCDSYDELHHYVAAVASAG-VRHIIVHARKC 186 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVG 233 L GLS K+NR IPPL Y VY+LK+DFP L+ ++NGG+KS++ A+ L ++DG+M+G Sbjct: 187 LLKGLSTKDNRTIPPLRYEVVYRLKQDFPELSFTLNGGVKSIQHARELLNTTNVDGIMIG 246 Query: 234 REAYQNPGILAAVDREIFGSS-DTDADPVAVVRAMYPYIE---------RELSQGTY--- 280 R AY P DR IF + + + ++ Y E LS Y Sbjct: 247 RAAYNTPWNFRDADRLIFNAERNPNLSRREIIERYLEYAEDLQAKWGSTEPLSDSPYTMA 306 Query: 281 LGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINV---LEHALKLV 326 + + +L LF G G + ++R +S K G + +E A+K++ Sbjct: 307 TSALMKPLLSLFNGEFGGKAFKREISAQWSKKGPRPELREMIESAMKVL 355 >UniRef50_C4VAN5 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VAN5_NOSCE Length = 336 Score = 207 bits (526), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 105/307 (34%), Positives = 173/307 (56%), Gaps = 19/307 (6%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA--YSEEEHPVALQLGG 72 +APMLD T + R F+RL S +T+L+TE++ +IH + L + + +Q+GG Sbjct: 19 LAPMLDVTTANFRRFVRLTSEHTILFTELIVANTVIHIDKEKLIERLGDIDERTVVQIGG 78 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 SD + + + G NLNVGCPS RVQ G FGA LM N +L+++ + ++ Sbjct: 79 SDVNEIVNAICVLKDVGCKHFNLNVGCPSTRVQKGCFGAVLMKNKELISEIINSVYKKCD 138 Query: 133 IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLD 192 I +++K R G+D+ D+YEF DF++ + + F +HARK WL GLSPK+NR IPPL+ Sbjct: 139 IVLSLKIRTGVDNYDTYEFFRDFVHFLVKNTPVKKFYVHARKCWLLGLSPKQNRNIPPLN 198 Query: 193 YPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH----MDGVMVGREAYQNPGILAAVDR 248 Y VY++K +FPH+ +NGG+K + + + +DG+M+GREA +N + + + Sbjct: 199 YSFVYKIKEEFPHVLFILNGGLKKIADFNKLFCNNNLTLDGIMIGREAIKNILVFRSFEN 258 Query: 249 EIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI----PGARQWRRY 304 + SS ++ +++ L++ IT +L Q I G ++W+ + Sbjct: 259 YLHESSQD---------TIFSVVKKYLNKFELSKPITFRILNPLQNILHGQKGTKKWKIF 309 Query: 305 LSENAHK 311 L+E+ HK Sbjct: 310 LNESVHK 316 >UniRef50_C5KTF9 tRNA-dihydrouridine synthase A, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KTF9_9ALVE Length = 403 Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 127/335 (37%), Positives = 188/335 (56%), Gaps = 41/335 (12%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG------DYLAYSEEEHPVALQLG 71 M+D +DR R F+RLLS ++TEM+ A++H + + ++E EHP+ QLG Sbjct: 1 MVDVSDRDFRMFMRLLSSKCEVWTEMLVDQALVHNEDIPRQLEKIIGFTEAEHPIVCQLG 60 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDV 130 G DP+ LA A++A RGYDE+NLNVGCPS RV +G+ G LM +LV DC++ + D Sbjct: 61 GHDPSKLAAAARIAHRRGYDEVNLNVGCPSSRVAGHGLMGVALMKTPELVRDCLRTLDDE 120 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTV------SGKGECEMFIIHARKAWLSGLSPKE 184 V V++KTR+G+DD D+ EF F+ T+ S + I+H RKAWL GLSP E Sbjct: 121 VP-HVSIKTRLGVDDLDTEEFTRSFLGTILPPLASSAAQQPYRVIMHCRKAWLQGLSPAE 179 Query: 185 NREIPPLDYPRVYQLKRDF-PHLTMSINGGIKSLEEAKAHLQ------HMDGVMVGREAY 237 NR +PPLDYPR ++ F + ++NGGI++L +AK L +++GVM+GR AY Sbjct: 180 NRTVPPLDYPRACRVLGAFGSRVRWTLNGGIETLWQAKDVLTSEIAPANLEGVMIGRAAY 239 Query: 238 QNPGILAAVDREIFGSSDTDADPV------AVVRAMYPYI--------ERELSQGTYLGH 283 NP +L D ++G D +PV A++ A Y+ + L+ GT+ Sbjct: 240 NNPCMLHDADVYLYGC---DENPVSAESRGALLEAYADYLHDRYPLESDSPLTPGTFATS 296 Query: 284 ITRHMLGLFQGIPGARQWRRYLSE--NAHKAGADI 316 + + LG F G R +R + AHK ++ Sbjct: 297 L-KPTLGTFANKSGNRMYRHTIDGLIKAHKRDREV 330 >UniRef50_B2RZT4 NIFR3-like protein n=23 Tax=Borrelia RepID=B2RZT4_BORHD Length = 335 Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 173/303 (57%), Gaps = 10/303 (3%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHPVALQL 70 + SVAPM+ TD H RY +RLLS+ LYT M++ +II G + + + P+A+Q+ Sbjct: 6 KISVAPMVAITDEHFRYMIRLLSKKVTLYTPMISAKSIIMGNLNKVVKQTPTDSPIAIQI 65 Query: 71 GGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 S A+ ++ E + +DE NLNVGCPS +VQN +GACLM V +KAM+ Sbjct: 66 ATSCENDAAKAIEILENKFNFDEYNLNVGCPSSKVQNANYGACLMQTPTQVGKILKAMKK 125 Query: 130 VVSIPVTVKTRIGIDD------QDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + PV++K RIGI + +++Y L F+ + + E + F +HAR A L+G SPK Sbjct: 126 NTNKPVSIKHRIGIRNNKREYHEENYTELQQFVEKI-MEYEIKNFTVHARIAILNGYSPK 184 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGIL 243 +N+ IP L + VY+LK++ ++ + +NGGIKS + K HL ++D VM+GR ++P ++ Sbjct: 185 DNQNIPKLRHDFVYRLKQEHKNIFIEVNGGIKSSDHIKTHLSYVDSVMIGRAVAKDPYLI 244 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 A + RE + ++ M YI +E + + I +H++ + A ++R+ Sbjct: 245 AKISREFLEEKEKIPTREEILLKMVEYI-KEYDECLSISTILKHIMSIVFAKENACKFRQ 303 Query: 304 YLS 306 LS Sbjct: 304 TLS 306 >UniRef50_B7GAU2 Predicted protein (Fragment) n=2 Tax=Bacillariophyta RepID=B7GAU2_PHATR Length = 330 Score = 190 bits (483), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 127/330 (38%), Positives = 178/330 (53%), Gaps = 33/330 (10%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSE--EEHPVALQ 69 S+APM+++TDRH R+ +RL+S TLLYTEMV A+ + K YLA E P LQ Sbjct: 1 LSLAPMMEYTDRHFRHLVRLVSNRTLLYTEMVAANALANERKNRYLAQGRVMPEGPSVLQ 60 Query: 70 LGGSDPAALAQCAKLA---EARG---YDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVAD 122 LGGSDP + Q A+ ARG Y INLN GCPS +V G FGA LM QLVA+ Sbjct: 61 LGGSDPEQMFQAAQTVLDMTARGHCDYTAINLNCGCPSPKVAGKGCFGAALMDEPQLVAE 120 Query: 123 CVKAMRDVVS--IPVTVKTRIG--------------IDDQDSYEFLCDFINTVSGKGECE 166 KA+ + +PVTVK RIG ID + Y L FI TV+ G Sbjct: 121 LTKALHEGTEGRLPVTVKCRIGTDSDQAFTRQAYAAIDPEQEYSKLRSFIETVASDGIVT 180 Query: 167 MFIIHARKAWL-SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ 225 F +HAR A L SP +NR+IPPL Y V +L +++P T S+NGG++S+ +A+A Sbjct: 181 DFSVHARIAVLQKSFSPSDNRKIPPLKYDIVRRLVQEYPDFTFSLNGGVESISQAQAEFA 240 Query: 226 H---MDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLG 282 + GVM+GR +P A DR ++ + + + +++A + +RE G + Sbjct: 241 TSPGLKGVMIGRSWAADPWSFAMADRLLYKDENAPRNRLEILQAFGRHADREEELGDPVK 300 Query: 283 ---HITRHMLGLFQGIPGARQWRRYLSENA 309 I + + LF G A+++R L+E A Sbjct: 301 IRRFIVKAVTPLFTGEINAKRYRIALNEIA 330 >UniRef50_C7HXQ4 Dihydrouridine synthase DuS n=1 Tax=Thiomonas intermedia K12 RepID=C7HXQ4_THIIN Length = 243 Score = 187 bits (474), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 99/193 (51%), Positives = 126/193 (65%), Gaps = 4/193 (2%) Query: 114 MGNAQLVADCVKAMRDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIH 171 M V D V AM + VS IPVTVK RIG+D +DSY F+ DF+ TVS +G CE FI+H Sbjct: 1 MAEPSRVRDSVAAMVEAVSGTIPVTVKHRIGVDHEDSYGFVRDFVGTVS-QGGCETFIVH 59 Query: 172 ARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVM 231 AR AWL GLSPKENR+IPPL + QL+RDFP L +NGGIK+ ++ + L + GVM Sbjct: 60 ARSAWLDGLSPKENRDIPPLRPEFILQLRRDFPALAFVLNGGIKTEQQIREWLPQVSGVM 119 Query: 232 VGREAYQNPGILAAVDREIFGSSDTDADPVAVV-RAMYPYIERELSQGTYLGHITRHMLG 290 VGR AYQ+P L+ DRE GS+D+ A +V M YI +G + ITRHML Sbjct: 120 VGRAAYQDPWSLSTWDREFLGSADSAAPEREIVEEQMGAYIAAWKVKGLHPQAITRHMLN 179 Query: 291 LFQGIPGARQWRR 303 L++G PG R+WR+ Sbjct: 180 LWKGQPGGRRWRQ 192 >UniRef50_Q8SUY1 Putative uncharacterized protein ECU07_1170 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SUY1_ENCCU Length = 357 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 134/229 (58%), Gaps = 4/229 (1%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA--YSEEEHPVALQL 70 S+APM+D T H R F+RL S T+L+TEM+ + +IH D L E + +Q+ Sbjct: 15 ISLAPMMDVTTAHFRRFIRLTSEKTVLFTEMIVSNTVIHVPRDKLRERLGEYDDRTVVQI 74 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GGSD ++ + ++ + GY NLN GCPS RV+ G FGA LM N +LVA+ + + Sbjct: 75 GGSDATSMVEAVRILQGLGYRMFNLNCGCPSSRVKKGSFGAVLMLNRELVAEIINRVYGE 134 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 +++K R G+D+ D +FL F++ + F +HAR+ WL GLSP++NR+ PP Sbjct: 135 TGAVLSLKIRTGVDEHDGVDFLDGFVSHIKKNTPTRTFYVHARRCWLEGLSPQQNRKAPP 194 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQN 239 LDY VY +K P L + +NG I K H ++DGVM+GR A +N Sbjct: 195 LDYASVYAIKSLHPELRIILNGSIGEGNLDKIH--NLDGVMIGRGAIRN 241 >UniRef50_B6AK02 Dihydrouridine synthase family protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6AK02_9CRYT Length = 469 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 108/242 (44%), Positives = 140/242 (57%), Gaps = 30/242 (12%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD----------YLAYSEE 62 SVAPMLD T+ H R+F RLLS N L+TEMV + II+ D L S+ Sbjct: 12 ISVAPMLDVTNIHFRHFCRLLSTNVQLWTEMVVSDTIIYCHNDPDREILLREGSLQKSDV 71 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVA 121 + P+ LQ+GG+DP +A ++A G+ NLN+GCPS RV G FGA L + LVA Sbjct: 72 DEPIVLQIGGNDPTKVADAIEIAIKYGFRSFNLNIGCPSQRVACKGNFGAYLYKDPDLVA 131 Query: 122 DCVKAMR---DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGK----------GECEMF 168 V + ++ ++VKTRIG+DD DSY+ L +FI+ VSG G E F Sbjct: 132 KIVGTVNHRIKSLNTRISVKTRIGVDDCDSYDILHNFISVVSGTTPRIGKSQGVGSEEDF 191 Query: 169 ------IIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA 222 IIH+RKAWL GL P++NR IP L Y VY+L DFPHL INGGI SL++A+ Sbjct: 192 LGATCYIIHSRKAWLDGLDPQKNRTIPSLKYTWVYKLVCDFPHLDFVINGGIDSLDKAEE 251 Query: 223 HL 224 L Sbjct: 252 LL 253 >UniRef50_UPI0001BCA063 tRNA-dihydrouridine synthase A n=1 Tax=Pseudomonas syringae pv. tabaci ATCC 11528 RepID=UPI0001BCA063 Length = 187 Score = 176 bits (447), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 91/181 (50%), Positives = 120/181 (66%), Gaps = 1/181 (0%) Query: 142 GIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKR 201 GI+ +DSY L DF+ V G CE F +HAR A L GLSPKENR+IPPL Y V QLK Sbjct: 1 GINGRDSYAELSDFVGKVHEAG-CESFTVHARIAILEGLSPKENRDIPPLRYDVVAQLKS 59 Query: 202 DFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPV 261 DFP L + +NGGIK+L++ HLQ DGVM+GREAY NP +LA VD+++F S+ Sbjct: 60 DFPDLEIVLNGGIKTLDQCGEHLQTFDGVMLGREAYHNPYLLAHVDQQLFDSTAPVISRY 119 Query: 262 AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEH 321 + +M PYI ++ G + H+TRHMLGL G PGAR++R+ LS + HKA + +L+ Sbjct: 120 DALESMRPYIAAHIASGGNMHHVTRHMLGLGLGFPGARRFRQLLSVDIHKAENPMLLLDQ 179 Query: 322 A 322 A Sbjct: 180 A 180 >UniRef50_UPI00019056C2 tRNA-dihydrouridine synthase A n=1 Tax=Rhizobium etli GR56 RepID=UPI00019056C2 Length = 182 Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 85/157 (54%), Positives = 111/157 (70%) Query: 170 IHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDG 229 IHARKAWL GLSPKENREIPPLDY VY++K+ +P + + INGGI++L+EA +HL H+DG Sbjct: 12 IHARKAWLKGLSPKENREIPPLDYEIVYRMKQRWPEVFIGINGGIRTLDEAASHLAHVDG 71 Query: 230 VMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHML 289 VM+GR AYQN +LA VD FG+ + D A+ M Y ER ++ G L H+ RHM+ Sbjct: 72 VMLGRAAYQNAAVLADVDHRFFGAPAAEPDWPALCERMMAYAERHIAGGGRLQHVARHMV 131 Query: 290 GLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLV 326 GLF G+PGAR++R+ LS +A K+GA VL A V Sbjct: 132 GLFTGLPGARRYRQILSTDAAKSGAGPEVLAAAFAAV 168 >UniRef50_B8BUP5 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8BUP5_THAPS Length = 353 Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 113/333 (33%), Positives = 154/333 (46%), Gaps = 82/333 (24%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH--------GKGDYL------- 57 F +APMLD + RYF+RLL++ ++TEMV + H GD L Sbjct: 9 FHIAPMLDVSTVEFRYFMRLLTKRAFIWTEMVVAETLWHQSNQKGVLSSGDDLELEPDLK 68 Query: 58 ---AYSEEE----HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFG 110 + E++ HPV Q+G +DP ++ GYD I+LN CPSDRV FG Sbjct: 69 RHCGWYEDQYLNPHPVVCQIGTNDPKQAEFATRVVHKLGYDRIDLNAECPSDRVAGREFG 128 Query: 111 ACLMGNAQLVADCVKAMRDVVS-------IPVTVKTRIGIDDQDSYEFLCDFINTVSGKG 163 A LM + + V+AM D IPV+VKTRIG+D+ D++E L ++ + G Sbjct: 129 AALMRDHDTAIEVVRAMVDTAQSTKSDNPIPVSVKTRIGVDEFDTFEHLEGWVQRLVDAG 188 Query: 164 ECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA- 222 C FIIHARK + GLSP +NR +PPL+YPRVY+L + FP NGGI SLE AK Sbjct: 189 -CTWFIIHARKVYTQGLSPAQNRTVPPLNYPRVYRLLQRFPSCDFWFNGGIMSLEHAKQV 247 Query: 223 ------------------------------------------------HLQHMDGVMVGR 234 L ++ GVMVGR Sbjct: 248 AFGYTGVGDSDLIRETSSEETDCIDDDHTVPCQRCGVPHGSCIAPPRMSLPNLKGVMVGR 307 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVAVVRAM 267 A +P LA +D +G + +DP R + Sbjct: 308 LARDHPSELATIDSHFYGEA---SDPCKNRREL 337 >UniRef50_Q5CTC5 YjbN-like Dus1p tRNA dihydouriding synthase Tim barrel n=2 Tax=Cryptosporidium RepID=Q5CTC5_CRYPV Length = 519 Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 99/260 (38%), Positives = 139/260 (53%), Gaps = 53/260 (20%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD----------YLAYSEEE 63 SVAPMLD T+ H R R++S+ T L+TEMV IIH D + ++ E Sbjct: 29 SVAPMLDVTNSHFRMLCRIISKKTELWTEMVVDDTIIHCYNDENRRKILQDVHFKKNDIE 88 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRV-QNGMFGACLMGN----AQ 118 +P+ LQLGG++P + + ++A G+ NLNVGCPS +V G FGA L N A+ Sbjct: 89 NPLVLQLGGNNPQKMEKAIEIAYKYGFQNFNLNVGCPSCKVASKGSFGASLFKNPLRVAK 148 Query: 119 LVADCVKAM--RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKG---------EC-- 165 +V C K + +V+ ++VKTRIG+D D+Y+ L +FI+ VSG C Sbjct: 149 IVDTCNKKLIHLGLVNKRISVKTRIGVDQYDTYQHLYNFISLVSGCNINNQNKKDYSCIF 208 Query: 166 -------------------------EMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLK 200 +FIIHARKAWL+G++P +NR IP L Y VY L Sbjct: 209 PQSDDDSDSNILESIDYTENNFIGANVFIIHARKAWLNGINPSKNRTIPKLKYYWVYMLT 268 Query: 201 RDFPHLTMSINGGIKSLEEA 220 DFP+LT +NGG+ S++E Sbjct: 269 LDFPNLTFILNGGVTSIQEC 288 >UniRef50_A4S469 Predicted protein n=3 Tax=Mamiellales RepID=A4S469_OSTLU Length = 425 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 111/331 (33%), Positives = 170/331 (51%), Gaps = 37/331 (11%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGG 72 ++AP LD T + R R +++ ++TEM A+ K + L + E QLGG Sbjct: 17 LAIAPGLDVTTPYYRALARAMTKRARVWTEMAHHDAVERLKSNTL--TRGETLATAQLGG 74 Query: 73 SDPAALAQCAKLAEAR-GYDEINLNVGCPSDRV-----QNGMFGACLMGNAQLVADCVKA 126 +DP+ LA+ ++ E GYDE+NLN GCPSDRV FGA +M + + A+C + Sbjct: 75 ADPSGLARAVEVCEGEYGYDEVNLNCGCPSDRVCGKGETEKRFGASMMLDVERAAECARR 134 Query: 127 MRDVVS-IPVTVKTRIGI---------DDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 M + +T+K R+G+ ++ D Y+++ +F+ + E FI+HAR A Sbjct: 135 MAEASDRAKITIKHRLGVRYDKTMMKHEETDCYDYVVNFVEAIHEAAGVEHFIVHARSAV 194 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD----GVMV 232 + GL+P NR+IPPL Y V+ L +F ++NGG+ SL +AK L D GVM+ Sbjct: 195 MGGLNPDANRKIPPLRYDEVFALCDEFGRCDFTLNGGVNSLAQAKELLDREDGKLAGVMM 254 Query: 233 GREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIER--ELSQGTYLGH------I 284 GR Y++P +LA VDR IFG D +P R++ I+R E G Y Sbjct: 255 GRAFYKHPCMLADVDRVIFG--DAACEPALTRRSV---IQRYGEFGDGVYAARGADIDVK 309 Query: 285 TRHMLG--LFQGIPGARQWRRYLSENAHKAG 313 +R + LF+ + G S+ H+AG Sbjct: 310 SRKAVARKLFKAVSGVTFGTSTGSKMFHRAG 340 >UniRef50_UPI000038242A COG0042: tRNA-dihydrouridine synthase n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038242A Length = 182 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 83/175 (47%), Positives = 110/175 (62%) Query: 156 INTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIK 215 + T S + I+HARKAWL GLSP+ENR++PPLDY RV +LK P+L ++INGGI Sbjct: 1 MPTASIAAGXDGLIVHARKAWLKGLSPRENRDVPPLDYGRVARLKAAHPNLPIAINGGIA 60 Query: 216 SLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIEREL 275 L AKA L +DGVM+GR AY +P +L AVD E+FG AD A + A+ P + L Sbjct: 61 DLSAAKARLAEVDGVMMGRAAYTDPALLLAVDPELFGEPPPVADAFAAIEALEPTLAEGL 120 Query: 276 SQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 ++G L TRHMLGLF G PGAR +RR+L+ A + L A+ V+ +R Sbjct: 121 ARGLRLHAYTRHMLGLFNGRPGARAYRRHLATAGMAPEAGLATLREAVARVSRER 175 >UniRef50_B7GEN0 Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GEN0_PHATR Length = 243 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 121/220 (55%), Gaps = 25/220 (11%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD------YLAY--------- 59 VAPM+ + R F+R+L++ L+TEMV + + + D YL Sbjct: 26 VAPMIRVSTPEFRAFVRILTKKATLWTEMVVDETLWYHRNDPGALQTYLGSLKRTDSNDH 85 Query: 60 ---SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRV-----QNGMFGA 111 +++ +P+ QLGG P A+ ++ A GYDEINLN+ CPS RV + FGA Sbjct: 86 EISAQQRNPIVCQLGGITPKHTAKATQIITAFGYDEINLNMDCPSARVSPQPRRRRQFGA 145 Query: 112 CLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIH 171 LM + VK + + +PV+VK R+G+D++DS+EFL + ++ + C+ F IH Sbjct: 146 ILMKETDRAVELVKTIWENTHLPVSVKCRVGVDNEDSWEFLEAIVRSL--RPYCQRFYIH 203 Query: 172 ARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSIN 211 ARK L GLSP +NR +PPL+YP VY+L FP +N Sbjct: 204 ARKCLLQGLSPAQNRIVPPLNYPCVYRLCESFPDCEFYLN 243 >UniRef50_B5Y4A8 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B5Y4A8_PHATR Length = 321 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 99/271 (36%), Positives = 134/271 (49%), Gaps = 44/271 (16%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGG 72 FS+APM+ T+RH RYF+RL S T LYTEMV I+ + PV LQ+GG Sbjct: 57 FSIAPMMGHTNRHYRYFVRLFSERTHLYTEMVPASQIVQ--------AFRRAPVVLQIGG 108 Query: 73 SDPAALAQCAKLAEARGYD-EINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 DP L Q A + A G +INLN GCPS+ V+ GA LM + VA CV+AM++ + Sbjct: 109 GDPEVLRQAAAIGAAYGGYVDINLNCGCPSNAVRGRSAGAALMRDPSHVAHCVEAMQEGI 168 Query: 132 ----------SIPVTVKTRIGI--------------DDQDSYEFLCDFINTVSGKGECEM 167 VTVK R+G+ DD ++Y F+N ++ G Sbjct: 169 FEMGQGTNKLKPNVTVKHRLGVRDAATFDASADRSKDDAEAYRSCRQFVNAIALTGAVAK 228 Query: 168 FIIHARKAWLSGLSPK--ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAK---- 221 +HAR L +P +NR +PPL V QL DFP + NGG+KSL+E Sbjct: 229 CHVHARYGLLGDFTPTTIQNRNVPPLRPSIVNQLAEDFPSVEFVTNGGVKSLDEVSQVVR 288 Query: 222 -----AHLQHMDGVMVGREAYQNPGILAAVD 247 + + ++ G MVGR A +P AA D Sbjct: 289 GGRHGSGVNNVVGAMVGRAAINHPCSFAAAD 319 >UniRef50_B6KDG7 Putative uncharacterized protein n=3 Tax=Toxoplasma gondii RepID=B6KDG7_TOXGO Length = 668 Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 100/325 (30%), Positives = 139/325 (42%), Gaps = 95/325 (29%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYS------E 61 G S APM+D+T+RH R + L+SR LYTEMV D L +S E Sbjct: 99 GLLSAAPMMDYTNRHWRRLISLMSRRLTLYTEMVPVPPAPCESPDSSQDLPFSVKRKLLE 158 Query: 62 EE-------HPVALQLG-GSDPAALAQCAKLAE---ARGYDE------------INLNVG 98 E + V LQ+G GS +A A L E R + E +NLN G Sbjct: 159 EAGSLASVPNDVVLQVGVGSAQSATAVARVLNEFSVDRDHAEPVTRMRGKRTFLVNLNCG 218 Query: 99 CPSDRVQNGMFGACLMGNAQLVADCVKAMRD----------------------------- 129 CPS RV G FG LM + + VA+ + + D Sbjct: 219 CPSPRVAKGSFGLILMEDPKRVAEMCQILVDGANNREGQKRCSLDVMGKSARGDTKDRTV 278 Query: 130 -------VVSIPVTVKTRIGIDDQD----------------------SYEFLCDFINTVS 160 S+ V+VK R+GI++ +Y+ L +F+ TV Sbjct: 279 HTNDSPETDSVAVSVKCRVGIEEDKQFLRSGSSPISSATTPYSSSSCTYDKLAEFVGTVV 338 Query: 161 GKGECEMFIIHARKAWLSG-LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEE 219 FIIHAR L G LSPK+N +IP VY+L DFP ++ + NGG+KS + Sbjct: 339 ETSPVRHFIIHARPGILVGKLSPKQNLQIPQRRPEWVYRLCSDFPTVSFTFNGGVKSFQN 398 Query: 220 AKAHLQHMD----GVMVGREAYQNP 240 A+ HL + + G+MVGR+ + P Sbjct: 399 AEEHLLNTNDKLAGIMVGRDMLERP 423 >UniRef50_UPI00016996DF tRNA-dihydrouridine synthase A n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016996DF Length = 109 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 52/80 (65%), Positives = 64/80 (80%), Gaps = 1/80 (1%) Query: 56 YLAYSEEEHPVALQLGGSDPAALAQCAK-LAEARGYDEINLNVGCPSDRVQNGMFGACLM 114 +L + EHPVA+QLGGS+PA + + LAE GYDE+NLNVGCPSDRVQNGM GACLM Sbjct: 20 FLEFDVSEHPVAIQLGGSNPAGACRGRRGLAETAGYDEVNLNVGCPSDRVQNGMIGACLM 79 Query: 115 GNAQLVADCVKAMRDVVSIP 134 + +LVADCV+AM++ VSIP Sbjct: 80 AHPELVADCVRAMKEAVSIP 99 >UniRef50_B7FVG0 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FVG0_PHATR Length = 497 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 81/256 (31%), Positives = 121/256 (47%), Gaps = 53/256 (20%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEM------VTTGA--IIHGKGDYL------ 57 +F VAPM +T R R LS N L+TEM + TG+ + G Y Sbjct: 36 QFHVAPMQCYTHAPLRQLYRTLSANATLWTEMEKVEDLLATGSKGLERRFGRYWTNRNTH 95 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDE-------INLNVGCPSDRVQNG--- 107 A S + + LQ+GG+ P L +C A+ D+ +NLN GCP ++ G Sbjct: 96 ASSSQPENLVLQIGGNQPDKLRECLLRLSAQSQDQDAFPFTQVNLNCGCPG--IEAGGAT 153 Query: 108 MFGACLMGNAQLVADCVKAMRDVV--SIPVTVKTRIGIDDQD------------------ 147 +GA LM ++ MRDV+ + V++K RIG+ D Sbjct: 154 TYGASLMKQPDYTGTLLQTMRDVLPSTTKVSLKCRIGVVDTPADLSLRTEATRSGGDAVH 213 Query: 148 ------SYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKR 201 SY+ L +++ G + I+HAR A L+GLSP +NR +P LDY V ++ Sbjct: 214 DTTTVASYQALHRYVSIARDAGVSHV-ILHARVAVLTGLSPSKNRIVPSLDYRMVERIAT 272 Query: 202 DFPHLTMSINGGIKSL 217 DFP L +++NGGI++L Sbjct: 273 DFPDLRVTLNGGIRNL 288 >UniRef50_Q86L21 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q86L21_DICDI Length = 392 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 121/239 (50%), Gaps = 19/239 (7%) Query: 13 FSVAPMLDWTDRHCRYFL-RLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVAL 68 FS+APM D TD R+ L + + +++ E V+ + + D L YS +E P+ Sbjct: 13 FSLAPMADVTDISFRFLLANCMGKPNVIFNEFVSADGLARNREALIDKLGYSTQEKPIVA 72 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQN--GMFGACLMGNAQLVADCVKA 126 Q G+ P + AK+A GYD +++N+GCPS +V + GA L+ N L + VK Sbjct: 73 QFFGNKPEYFYESAKIANELGYDGVDINMGCPSRKVLSPKQASGAALITNPSLAKEIVKI 132 Query: 127 MRDVVSI--PVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 ++ ++ PV+VKTRIG D + E++ + + E +H R L P Sbjct: 133 TKEALNFEKPVSVKTRIGFDKIEIDEWIPLIL-----ESEPACLTLHLRTKKELSLVPA- 186 Query: 185 NREIPPLDYPRVYQLKRDF-PHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNP 240 + E LD RV +L+ P+ + NG +++ E+ ++ +DGVM+GR Y NP Sbjct: 187 HWEHQVLD--RVVELRNQISPNTLLVGNGDVETYEQGIDYINQFGIDGVMIGRAVYGNP 243 >UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4Z7_ACIC5 Length = 398 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 28/265 (10%) Query: 56 YLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMG 115 YL + E+EHP+A QL GS+P LA+ A++ E G+D ++LN+GCP+ RV G+ L+ Sbjct: 102 YLTFYEDEHPIAAQLFGSNPETLAEGARIVEDTGFDMVDLNLGCPAKRVVACNGGSGLLR 161 Query: 116 NAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 + L+A +A+R V IP TVK R+G +DQ +C + ++ + +HAR Sbjct: 162 DLPLIAKIFEAVRGAVKIPFTVKFRLGWNDQ---HIICVPLARLAEESGLNAVSLHART- 217 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVG 233 +E + + ++K D + + NG +++ E+A A + DGVM+G Sbjct: 218 -------REQGYSGQARWEHIAEVK-DAVRIPVIGNGDVRTPEDACALVAKTGCDGVMIG 269 Query: 234 REAYQNPGILAAVDR-EIFGSSD--TDADPVAVVRAMYPYIERELSQGTYLGHITRHMLG 290 R A NP I + + G D ++AD ++R Y E L +G H +R G Sbjct: 270 RAAPANPWIFRQIAQYTATGRYDEPSEADRYQMIRT---YFEMLLDEGREDEHASRAAEG 326 Query: 291 LFQ--------GIPGARQWRRYLSE 307 + G+PG R+ + E Sbjct: 327 KMKQFASWFTHGVPGGAGLRKSIYE 351 >UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobiales RepID=B0UHM8_METS4 Length = 358 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 91/311 (29%), Positives = 136/311 (43%), Gaps = 47/311 (15%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE--HPVALQLGG 72 +AP+ TD H R R + ++ +EMV + G + +E E P +QL G Sbjct: 32 LAPLSGVTDLHLRRIARRCGASAVV-SEMVAAEDLARGSAEARLRAEGEGVRPHVVQLAG 90 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 DP +A+ A+LAEA G D I++N+GCP+ +V G G+ LM + A + A+R+ V+ Sbjct: 91 CDPRWMAEGARLAEANGADVIDVNMGCPAKKVTGGEAGSALMRDLDHAARLLAAVREAVA 150 Query: 133 IPVTVKTRIGIDDQD--------SYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +PVTVK R+G DD E L TV G+ + + R W + + E Sbjct: 151 VPVTVKMRLGWDDASRNAPDLARRAEALGLSAVTVHGRTRQQFYA--GRADWAAIRAVVE 208 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGI 242 IP + NG + SL EA+A L VM+GR A P + Sbjct: 209 AVSIP------------------VVANGDVGSLAEARACLAESGAAAVMIGRAAVGRPWL 250 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 + AV + G A P + R +Q G +L L+ G R R Sbjct: 251 VGAVAAGLRG-------------APAPALTRA-AQADLAGEHYEGLLALYGVAMGVRHAR 296 Query: 303 RYLSENAHKAG 313 ++L+ A AG Sbjct: 297 KHLAAYADHAG 307 >UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=Alphaproteobacteria RepID=DUS_RICBR Length = 326 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 88/311 (28%), Positives = 138/311 (44%), Gaps = 31/311 (9%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSR--NTLLYTEMVTTGAIIHGKGDYLA----Y 59 ++ S +APM TD F RL+ R L+ +EM+ + A+I L Sbjct: 6 NIELSSNIILAPMSGVTDLE---FRRLVKRFGAGLVVSEMIASRAMIVESRQSLQKCSIM 62 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 ++ +QL G +P +A+ AK+ E G I+LN GCP+ +V NG G+ LM + L Sbjct: 63 QDDATSACVQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVNGYSGSALMRDEGL 122 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK--AWL 177 A +A V IPVTVK R+G DDQ I SG +M +H R + Sbjct: 123 AAKIFEAAVKAVKIPVTVKMRMGWDDQTKNAPTLAKIAERSG---IQMVTVHGRTRCQFY 179 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGRE 235 SG + D+ + +K + + NG I + +AK L+ DGVMVGR Sbjct: 180 SGNA----------DWEFIKNVKEAV-KIPVIANGDITNFAKAKEALEKSSADGVMVGRG 228 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVA----VVRAMYPYIERELSQGTYLGHITRHMLGL 291 AY P +++ +D + + A + +V Y I + + +HM Sbjct: 229 AYGKPWLISQIDHYLKTGEEKPAPSIESQLDIVLEHYQAIVDYYGESAGVPIARKHMGWY 288 Query: 292 FQGIPGARQWR 302 G+P + ++R Sbjct: 289 SSGLPNSAEFR 299 >UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured marine bacterium 578 RepID=Q6SFW7_9BACT Length = 322 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 40/290 (13%) Query: 10 SGRFSVAPMLDWTDRHCRYFLR------LLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE 63 S + +APM +D+ R R S ++ ++ T H L + E+ Sbjct: 9 SSKVLLAPMAGTSDKPFRMICREQGAALTTSEMVVMQKHLLNTNKSKH----RLDFRSEQ 64 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P+++Q+ GS+ LA+ AK A G D I++N+GCP+ +V N G+ LM N +LV D Sbjct: 65 SPISIQIAGSESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGSALMKNEKLVEDI 124 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 +KA+ + V+IPVT+K R G ++++ I ++ +M IH R + K Sbjct: 125 IKAVVNAVNIPVTLKMRTGWNEENKN---APTIAKIAEDNGIKMLAIHGRTR-----AQK 176 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPG 241 N + +Y V ++K + + NG I S ++AK L + D VM+GR NP Sbjct: 177 YNGD---AEYDTVKKIK-GIVSIPVVANGDITSAQKAKKVLDYTGADAVMLGRATQGNPW 232 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 ++ ++ + T P A P +++++S I RH+L + Sbjct: 233 LVGQINNYL----KTGKSPKA------PLLDKKISL------ILRHILQI 266 >UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMP9_9FIRM Length = 330 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/256 (29%), Positives = 117/256 (45%), Gaps = 28/256 (10%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLA 58 P ++ G +APM +D R R + L EMV+ + + D L Sbjct: 4 PRIGNIQLDGFALLAPMAGVSDLAYRVIARKMG-AALTTAEMVSAKGLYYHNEKTKDMLK 62 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 +EEEHPV+LQL GSDPA +A AK+ E G D +++N+GCP +V G+ LM N Sbjct: 63 IAEEEHPVSLQLFGSDPAVMALGAKVMEKAGADIVDINMGCPMQKVVKNGDGSALMKNVT 122 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVS-----GKGECEMFIIHAR 173 L A+ + A+ V IPVT+K R+G + D IN V +H R Sbjct: 123 LAAEIISAVTAAVKIPVTIKMRLG--------WSRDTINAVELAMAAESAGAAAITVHGR 174 Query: 174 KAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVM 231 +E+ + D+ + ++ D + + NG + AKA ++ V Sbjct: 175 T--------REDFYMGTADWREIKKVV-DAVRIPVIGNGDVGDGPAAKALMEETGCAAVA 225 Query: 232 VGREAYQNPGILAAVD 247 +GR A+ NP + AV+ Sbjct: 226 IGRAAWGNPWVFGAVN 241 >UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostridia RepID=B9MMW4_ANATD Length = 328 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 94/338 (27%), Positives = 151/338 (44%), Gaps = 58/338 (17%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSR--NTLLYTEMVTTGAIIHGKG---DYLAYSEEEHP 65 G+ +APM +TD+ F RL SR + TEM+++ A++ G D +++SEEE Sbjct: 6 GKIFLAPMAGFTDK---VFRRLCSRFGADVTVTEMISSKALVLGSAKTKDLISFSEEEKI 62 Query: 66 VALQLGGSDPAALAQCAK-LAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 +Q+ G+DP +AQ K L + Y I++N+GCP ++ G LM N L A V Sbjct: 63 RGVQIFGNDPEVMAQSVKILQDEFEYHFIDINMGCPVPKLVRSGEGCALMKNPSLAAKIV 122 Query: 125 KAMRDVVSIPVTVKTRIGIDDQ--DSYEFL-------CDFINTVSGKGECEMFIIHARKA 175 + + V PV+VK R G DD+ ++ EF F+ TV G+ +++ + Sbjct: 123 EEVAKVSRKPVSVKIRKGFDDENINAPEFAYILQESGASFV-TVHGRTRAQLY--SGKAD 179 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA--HLQHMDGVMVG 233 W KE +IP + NG I E AK + D +M+G Sbjct: 180 WEIIRKVKEKLKIPVI------------------ANGDIVDFESAKKAYEVTRADSIMIG 221 Query: 234 REAYQNPGILAAVDREIF--GSSDTDADPVAVVRAMYPYIERELSQ-GTYLGHIT--RHM 288 R A NP + + +E F G +T P +R + + S+ G + + +H+ Sbjct: 222 RAALGNPWVFLQI-KEGFEKGYVETKVLPHMKIRVAIEFFTQLCSEKGDKMAVLEARKHL 280 Query: 289 LGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLV 326 +GI ENA K IN + +A +L+ Sbjct: 281 SFFVKGI-----------ENAAKIRDKINRINNATELL 307 >UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadaceae RepID=C6XJQ7_HIRBI Length = 337 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 87/318 (27%), Positives = 143/318 (44%), Gaps = 56/318 (17%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSR--NTLLYTEMVTTGAIIHGKGDY---LAYS 60 DV + +APM TD F R SR ++ TEM+ + G+ D + Sbjct: 6 DVEINDAVFLAPMSGATDAP---FRRQASRFGAPVVITEMIAGSELATGRQDMVWRITKP 62 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E P +QL G DP + + A+++ + G D I++N+GCPS +V G GA LM + L Sbjct: 63 ENTFPFVVQLAGRDPKWMYEAARISASAGADIIDINMGCPSRQVTGGQSGAALMRDLDLA 122 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQD----SYEFLCD----FINTVSGKGECEMFIIHA 172 + + A R+ +PV+VK R+G DD + +C+ + TV G+ C+ + A Sbjct: 123 RELIIAAREGGGLPVSVKMRLGWDDDTLNAPALAKICEEEHVKLITVHGRTRCQFYTGKA 182 Query: 173 RKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGV 230 D+ +V ++K +L + +NG I S + AK L DGV Sbjct: 183 -------------------DWNKVKEVKL-ASNLPLIVNGDIDSSKTAKQAILLSQADGV 222 Query: 231 MVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQ--GTYLGHITRHM 288 M+GR A P +L + ++ A PYIE S+ + ++ + Sbjct: 223 MIGRAALGRPWLLGKIASDL---------------ANRPYIEPTWSEKLSSLCEQVSDSV 267 Query: 289 LGLFQGIPGARQWRRYLS 306 L L+ G R +R++L+ Sbjct: 268 L-LYGDRLGVRVFRKHLA 284 >UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chloroflexi (class) RepID=B8GCQ5_CHLAD Length = 351 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 87/311 (27%), Positives = 136/311 (43%), Gaps = 26/311 (8%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG----DYLAYSEEEHPVALQL 70 +APM TD R + L L+ TEM T A + K L Y EE P+ +Q+ Sbjct: 30 LAPMAGVTDSIFRRMILRLGGCGLVSTEM-TNAASVSPKALRRHRLLDYLPEERPLTMQI 88 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G+DP +A A++ E G D I++N GCPS +V G G+ L+ + + ++A+R Sbjct: 89 SGNDPDLVANAARVVEQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKMERLLRAVRAA 148 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINT--VSGKGECEMFIIHARKAWLSGLSPKENREI 188 V IPVT+K R G D+ +FI + +H R +E Sbjct: 149 VQIPVTLKLRAGWDEAS-----LNFIEAGQRAEAAGVAALTLHPRT--------REQGYK 195 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILAAV 246 D+ RV LKR + + +G + + ++A L+ DGVM+GR A NP I V Sbjct: 196 GQADWSRVAALKRAV-SIPVIGSGDVVTAQDALIRLRDSGADGVMIGRGAIANPWIFRQV 254 Query: 247 DREIFGSSDTDADPVAVVRAMYPYI---ERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 G + + P + Y+ EL + L I + + + G+PG+ R Sbjct: 255 ADLRQGRTPFEPTPADKYHLLLEYMAIYAEELPERLALNKIKQLIGQFYIGLPGSNHLRV 314 Query: 304 YLSENAHKAGA 314 + + A A Sbjct: 315 AVHTSTSLAAA 325 >UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3 n=2 Tax=Acidobacteria RepID=Q1IVR5_ACIBL Length = 370 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 88/326 (26%), Positives = 147/326 (45%), Gaps = 26/326 (7%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG----DYLAYSEEEHPVALQL 70 +APM TD R F+R L L+ TE + + + YL + E P++ QL Sbjct: 36 LAPMAGVTDTVFRRFIRNLGGCGLMMTEFTSADGLARMREAKARRYLTFYGNERPISAQL 95 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GSD LA AK+ + G+D ++LN+GCPS RV G+ L+ + + +++R Sbjct: 96 FGSDAETLADAAKVVQDLGFDLVDLNLGCPSKRVVKCNGGSGLLRDLPQIKVIFESVRKA 155 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEM--FIIHARKAWLSGLSPKENREI 188 V+IP TVK R G ++++ F+ C + +HAR G S + N Sbjct: 156 VTIPFTVKFRAGWNEKELV-----FLELAKLAENCGLNAVAMHARTR-EQGYSGQAN--- 206 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAV 246 + + LK+ + + NG I++ E+A A + D VM+GR A NP I + Sbjct: 207 ----WGWIADLKQ-VVKIPVIGNGDIRTPEDAAAMVAKTGCDAVMIGRSAASNPWIFRQI 261 Query: 247 DR-EIFGSSD--TDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 ++ G D T+ D ++R + + +QG G + + G+PG R+ Sbjct: 262 EQYTATGRYDLPTNEDRYEMIRMYFRMLIENDTQGAE-GKMKQFASWFTHGVPGGGVLRK 320 Query: 304 YLSENAHKAGADINVLEHALKLVADK 329 + E + + V + L+A K Sbjct: 321 AVYEAKKRETILVAVDQFFEALLAGK 346 >UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-binding domain protein n=2 Tax=Brachyspira RepID=C0QXB6_BRAHW Length = 325 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 76/258 (29%), Positives = 128/258 (49%), Gaps = 25/258 (9%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRN---TLLYTEMVTTGAI---IHGKGDYLAYS 60 V+ RF +APM +TD Y R LSR LL TE+V+ A+ + Y+ + Sbjct: 10 VNIPSRFFLAPMAGYTD----YVFRRLSRKFGAGLLVTELVSAAALARQVKKTYRYMEHK 65 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E+E+P++LQL G++ + ++ + G+ I++N+GCP+ +V GA L+ + + Sbjct: 66 EDEYPISLQLFGANEDDYKRAIEITDLSGFSFIDINMGCPTKKVVKNNGGAGLLEDTDKM 125 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 + A++ V +PV+VK R+G+ + E + + G C +H R A Sbjct: 126 ISVLNAVKSVSPLPVSVKIRLGLKRGEGGEI--ERALAMKENGAC-FLTLHGRYA----- 177 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSI-NGGIKSLEEA-KAH-LQHMDGVMVGREAY 237 + D+ + ++K + I NG IKS E+A KA + +DG+MVGR A Sbjct: 178 ---SDMYRGTADWEAIAKIKEALGEDYILIGNGDIKSKEDAVKAFDISKVDGIMVGRGAI 234 Query: 238 QNPGILAAVDREIFGSSD 255 NP I ++ IF +D Sbjct: 235 GNPWIFTELNT-IFEDND 251 >UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonadales RepID=Q3A324_PELCD Length = 342 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 85/309 (27%), Positives = 137/309 (44%), Gaps = 22/309 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEE 62 +H +APM TD CR +R L +TEM++ ++ G D LA + Sbjct: 24 SLHIKHNILLAPMAGITDLACRLLMRPYGIG-LAFTEMISANGLVLGGDATRDLLASTPS 82 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 + P+ +QL G +P L+Q K E+ G D I+LN+GCP +V G+ LM VA Sbjct: 83 DRPLGIQLFGENPKYLSQACKQVESHG-DLIDLNIGCPVKKVVRSGAGSALMQTPARVAQ 141 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 + AMR +P+TVK R G D FL I ++ + + +H R G S Sbjct: 142 IIAAMRRATHLPLTVKIRAGW-DASHINFL--EIAHIAEQEGVDAITLHPRTR-SQGFSG 197 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNP 240 N ++ + +LKR + + +G I + A+ LQ D VM+GR Y NP Sbjct: 198 SANWDL-------IAELKRR-STIPVIGSGDIFEAQYAQRMLQQTGCDAVMIGRGCYGNP 249 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIEREL---SQGTYLGHITRHMLGLFQGIPG 297 + + G + P ++E L + + + +H+ +G+PG Sbjct: 250 WLARDILAMRQGQTPAPVTPEERCDVALRHMELFLRFNDERKAVFDLRKHLCWYAKGLPG 309 Query: 298 ARQWRRYLS 306 A Q+R ++ Sbjct: 310 AAQFRSSIN 318 >UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJ96_SYNFM Length = 352 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 114/242 (47%), Gaps = 23/242 (9%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPV----ALQLG 71 APM TD R + ++ TEMV+ ++ + L ++HPV A+Q+ Sbjct: 27 APMAGVTDSAYRALMADFG-AAMVTTEMVSIQGLVRNQRATLDLCRQQHPVGVPLAVQVF 85 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G DPA +A+ A+L E G I++N GCP +V GA L+ + +A V+A++ V Sbjct: 86 GRDPAVMAEAARLVEQGGAALIDINAGCPVRKVVRQGAGAILLKDPDRLAAMVEAVKRAV 145 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA--WLSGLSPKENREIP 189 S+PVTVK R+G D ++ + + G + +H R A SG + Sbjct: 146 SVPVTVKIRVGWD--NAANGVAGLARQLVSAG-VDAITVHGRTAAQMYSGRA-------- 194 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKS--LEEAKAHLQHMDGVMVGREAYQNPGILAAVD 247 D+ R+ ++K + NG + S L E H DGVM+GR + NP + A + Sbjct: 195 --DWSRIAEVKAAVAVPVIG-NGDVTSPELAERMIHETGCDGVMIGRASLGNPWLFAVIS 251 Query: 248 RE 249 R Sbjct: 252 RR 253 >UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3 n=24 Tax=Cyanobacteria RepID=Q3AZ67_SYNS9 Length = 356 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 140/304 (46%), Gaps = 25/304 (8%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMV--TTGAIIHGKGDYLAYSEEEHPVALQ 69 R +P+ TD+ R +R SR++LL+TEMV T+ + HG G EE P+A+Q Sbjct: 38 RVLQSPLAGVTDKIFRGLVRRWSRDSLLFTEMVNATSLELGHGYGKMDDLKAEEGPIAVQ 97 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 L P A+A A+ AE G I++N+GCP ++ G+ L+ + L ++A+ D Sbjct: 98 LFDHRPHAMAHAARRAEQAGAFLIDINMGCPVRKIAKKGGGSGLIRDPNLATQILEAVVD 157 Query: 130 VVSIPVTVKTRIGIDDQDSYEFL-CDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 VSIPVTVKTR+G S C + +M +H R +E Sbjct: 158 AVSIPVTVKTRLGWCGSSSDPITWCRQLQNAG----AQMLTLHGRT--------REQGFK 205 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL--- 243 ++ + ++K+ + + NG I S +A L+ DGVMVGR +P ++ Sbjct: 206 GQANWNAIAEVKQAL-TIPVIANGDINSPTDALRCLEITGADGVMVGRGTMGSPWLVGQI 264 Query: 244 --AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 A ++R I + D+ A ++ + S G + +HM G PGA Q Sbjct: 265 EAAFMNRPIPATPDSGARLHLAKEQLHDLVSSRGSHGLLIAR--KHMSWTCTGFPGAPQL 322 Query: 302 RRYL 305 R L Sbjct: 323 RHSL 326 >UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8P9_9CHLA Length = 342 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 75/278 (26%), Positives = 125/278 (44%), Gaps = 21/278 (7%) Query: 38 LLYTEMVTTGAII-HGKGDY--LAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEIN 94 L+Y EMV A++ H + L + ++ HP+ QL GS P A+ AK+ E G+D ++ Sbjct: 42 LMYCEMVKMDALVRHDPNTFRMLDFDKDMHPIGGQLCGSKPQLAAKAAKIIEDLGFDVVD 101 Query: 95 LNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLC- 153 LN GCP D+V G+ L+ N L+ + + M V IPVTVK R G DD++ LC Sbjct: 102 LNCGCPVDKVTKDGSGSGLLKNPLLIGEILSEMVAAVKIPVTVKIRAGWDDEN----LCA 157 Query: 154 DFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGG 213 + I ++ K + IH R ++ P ++ + K+ H+ + NG Sbjct: 158 EEITQIAEKAGAKAITIHGRT--------RQQAYRGPANWDHIKASKQVAKHIKVIGNGD 209 Query: 214 IKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYI 271 + AK ++ D V+V R P I + + G + P +A+Y + Sbjct: 210 VMDPTSAKRMFEYTGCDAVLVARGTMGQPWIAQDILNYLQGGTIRVHTPEDCRQALYEHF 269 Query: 272 ---ERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLS 306 ER + + + R + G R++R +S Sbjct: 270 LCTERYYNPRQVVIEMRRVGCWYIKSSGGTREFRGLIS 307 >UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRF1_BDEBA Length = 337 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 87/320 (27%), Positives = 140/320 (43%), Gaps = 54/320 (16%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD----YLAYSEEEHPVAL 68 F +APM TD R F++ L +++ TE+V+ I + K D +++ E + P+ + Sbjct: 12 FVLAPMAGITDHAFRTFIKKLDA-SVVVTELVSASGIEY-KSDRTLKLMSFDESQRPIGI 69 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 QL G +P +A+ A++AEA G D ++LN GCP +V G+ ++ + V V ++ Sbjct: 70 QLFGEEPEIVARAAQVAEADGCDFVDLNFGCPVPKVVKKGAGSAILKDPAAVQKMVSTVK 129 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS--GLSP---- 182 + IP+T+K R G D + N +G IH R S GL+ Sbjct: 130 AAIKIPLTIKIRTGWDANSRNA--TEICNIAYNEG-VSWVAIHGRTRAQSYTGLADWDFI 186 Query: 183 ---KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAY 237 K N +IP L NG I + +A LQ DGVM+GR Sbjct: 187 ADVKANTKIPILG------------------NGDILTPRQANLRLQQSGCDGVMIGRGCL 228 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGL------ 291 +NP I + S +P+ V+ Y + + L Q + H H+ G+ Sbjct: 229 KNPFIF------MDALSLWRGEPIKDVKRDYVSLFQGL-QKEIVAHCDEHITGIQLRKFA 281 Query: 292 ---FQGIPGARQWRRYLSEN 308 G GA Q+R+ L ++ Sbjct: 282 AWFSTGYSGAAQFRKNLFQS 301 >UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKE4_DESAH Length = 330 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 93/335 (27%), Positives = 146/335 (43%), Gaps = 40/335 (11%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEE 62 D+ GR +AP+ T+ R + TL+ +EMV+ + L Sbjct: 5 DLEIRGRTVLAPLAGITNLPFRIIAKGCG-CTLVCSEMVSAKGLEFNSEKTVQLLRTDAC 63 Query: 63 EHPVALQLGGSDPAALAQCAK-LAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E PV++Q+ G++ ++A A+ +AE D I++N GC +V G LM + Sbjct: 64 ERPVSVQIFGAEALSMANAARWIAERNVADIIDINFGCSVKKVARTGAGVALMKDMDNAR 123 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 ++A+R VS+P T+K R G D S F D G + IH R A G Sbjct: 124 AIIRAVRRAVSMPFTIKIRSGWDSSASQAF--DIARMAEDNG-VDAIAIHPRTA-AQGFR 179 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSI--NGGIKSLEEAKAHLQHM--DGVMVGREAY 237 + D+ + +LK LT+ + NG I + E+ A +Q DGVMVGR A Sbjct: 180 GRA-------DWSMIARLKE---MLTIPVIGNGDITTPEQGVAMIQETGCDGVMVGRAAM 229 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGH-----ITRHMLGLF 292 NP I ++ + G + + P+ + + M +E S YLG + R L F Sbjct: 230 GNPFIFGGIEALLRGEAWNEPSPMEIFQIMEEMVE---SHVAYLGERPACRMMRSRLAWF 286 Query: 293 -QGIPGARQWRRYLSENAHKAGADINVLEHALKLV 326 +G GA +RR L+ I L+ A+ L+ Sbjct: 287 VKGFAGASVFRRELT--------GIETLDQAMALI 313 >UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobacterineae RepID=Q090Q9_STIAU Length = 369 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 91/327 (27%), Positives = 138/327 (42%), Gaps = 57/327 (17%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEE-EHPVAL 68 + +APM ++R R + L TE+V+ ++ YL +S E E P +L Sbjct: 45 YILAPMAGVSERPFR-VIAFKWGAALCPTELVSAQGLMRANQRTLKYLRFSPEVERPYSL 103 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ G +P A+AQ A + +A G I++N+GCP +V G+ LM A V+A+ Sbjct: 104 QIFGGEPEAMAQAALVGKAHGAQIIDINMGCPVKKVTKNGAGSALMCEPLRAARIVQAIA 163 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGE-----CEMFIIHARK--AWLSGLS 181 + +PVT K R G D N + GE C IH R SG + Sbjct: 164 EATGLPVTCKIRSGWDAHHR--------NYLQMAGELFSAGCAALAIHPRTRDQGYSGFA 215 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQN 239 D+ + LKR FP T+ NG +K+ +A+ + D VM+GR A N Sbjct: 216 ----------DWSVIADLKRHFPDRTLIGNGDVKTPADARRMRETTGCDFVMIGRGALGN 265 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGAR 299 P I RE+ G P E G L H H+ + + + R Sbjct: 266 PWIF----RELAGGP--------------PPTPEERCAGV-LEHFRAHVEFVGEPLGAVR 306 Query: 300 QWRRYLSENAH------KAGADINVLE 320 +RR+++ AH A++N LE Sbjct: 307 SFRRHMAWYAHGLHGAAAFRAEVNTLE 333 >UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family protein n=3 Tax=Clostridiales RepID=B0TBQ2_HELMI Length = 331 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 76/130 (58%), Gaps = 4/130 (3%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVALQLGG 72 APM TD+ R L+ R L+YTEM++ A+ + + L + E P+A+Q+ G Sbjct: 23 APMAGVTDKPFRTVLKE-HRCPLVYTEMISDKALTYANRNTMEILDITGEARPIAVQIFG 81 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 S+PA +A+ A++ EA G I++N+GCP+ ++ GACL+ L D +A+ V Sbjct: 82 SEPAVMAEAARIVEAAGASIIDINMGCPAPKIVRNGEGACLLKTPDLAVDIAEAVVRAVQ 141 Query: 133 IPVTVKTRIG 142 +PVTVK RIG Sbjct: 142 VPVTVKMRIG 151 >UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYE4_DESOH Length = 326 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/251 (29%), Positives = 115/251 (45%), Gaps = 18/251 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEE 63 V +GR +AP+ TD R + + L+Y+EMV++ + + G L + EE Sbjct: 6 VFLAGRTILAPLAGITDAPFRRLAKA-AGCALVYSEMVSSHGLFYQSEKTGAMLRTTPEE 64 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P A+Q+ G PA + + A + +A G I++N GC ++ GA LM + L A+ Sbjct: 65 APFAVQIFGGKPAVMGRAAAMVQASGAHMIDINFGCSVKKILKSGAGAALMKDLPLAAEV 124 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 ++A+RD VSIP+T+K R G + S F I G +H R A G Sbjct: 125 IQAVRDAVSIPLTIKMRSGWNPDGSDAFHLAEIAEARG---VNAVALHPRTA-TQGFGGT 180 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPG 241 D+ + LK+ L + NG I E+A+ L D VMVGR A P Sbjct: 181 A-------DWSLIAALKQR-TGLPVIGNGDIVLPEDARRMLDQTGCDAVMVGRAAIGAPW 232 Query: 242 ILAAVDREIFG 252 I ++ + G Sbjct: 233 IFKQINACLAG 243 >UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured SUP05 cluster bacterium RepID=D0U4P6_9GAMM Length = 324 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 117/249 (46%), Gaps = 19/249 (7%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEHPVALQLG 71 +APM +D+ R R L +EMV + G L +S E P+++Q+ Sbjct: 16 LAPMAGTSDKPFRAICRAQGA-ALTTSEMVVIQKHLLGTNKSKHRLDFSGEPAPISIQIA 74 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 GS LA A+ A G D I++N+GCP+ +V N G+ LM + LV + A+ V Sbjct: 75 GSQADELAYSAQQALKFGADIIDINMGCPAKKVCNKAAGSALMQDEALVKSILNAVVSAV 134 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 IPVT+K R G + + I ++ + +M +H R +E++ Sbjct: 135 DIPVTLKMRTGWNVSNKN---APTIAKIAEEAGIQMLSVHGR--------TREDKYTGMA 183 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAVDRE 249 +Y + +K + + NG I S ++A++ LQ+ DGVMVGR NP I+ +D Sbjct: 184 EYDTIKAVKSQVG-IPVIANGDITSAKKAQSVLQYTGADGVMVGRATQGNPWIIHEIDHY 242 Query: 250 I-FGSSDTD 257 + G TD Sbjct: 243 LKTGQKATD 251 >UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes RepID=C4Z9L8_EUBR3 Length = 323 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 112/242 (46%), Gaps = 28/242 (11%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNT---LLYTEMVTTGAIIHGKGD---YLAYSEEEHPVAL 68 + PM TD RLL + LL EMV+ AI++ + L+ E E PV+L Sbjct: 22 LGPMAGVTD----LPFRLLCKEQGAGLLCMEMVSAKAILYKNKNTESLLSIDEREKPVSL 77 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ GSDP +AQ AK E R +D +++N+GCP ++ N G+ LM N L ++++ Sbjct: 78 QMFGSDPQIMAQIAKQIEERPFDILDINMGCPVPKIVNNGEGSALMKNPLLAGQIIESIV 137 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIH--ARKAWLSGLSPKENR 186 + PVTVK R G DD+ + SG +H R+ + SG + Sbjct: 138 KAIDKPVTVKIRKGFDDEHVNAVELAHVAEESG---ASAVAVHGRTREQYYSGKA----- 189 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILA 244 D+ + Q+K + + NG + S E+ + DG M+ R A NP I + Sbjct: 190 -----DWDIIRQVKEAVS-IPVIGNGDLLSAEDVIKMQEQTGCDGFMIARGAQGNPWIFS 243 Query: 245 AV 246 + Sbjct: 244 QI 245 >UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacteroidetes/Chlorobi group RepID=B3QWF2_CHLT3 Length = 402 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 91/329 (27%), Positives = 149/329 (45%), Gaps = 47/329 (14%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEEHPVALQLG 71 +APM D TD R + + +++TE +++ +I L ++E PVA+Q+ Sbjct: 58 LAPMEDVTDPSFRRLCKHYGAD-IVFTEFISSDGLIRHAVKSKRKLDVFDDERPVAIQIF 116 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G+ + + A++AEA G D I++N GCP+ +V G+ L+ L+ A+ V Sbjct: 117 GNQIEPMVEAAQMAEAAGPDFIDINYGCPAKKVAGKGAGSGLLCQPDLMEKITDAVVKAV 176 Query: 132 SIPVTVKTRIGIDDQ-----DSYEFL--CDFIN-TVSGKGECEMFIIHARKAWLSGLSPK 183 +PVT KTRIG D++ D+ L C ++ G+ +M+ A +W++ K Sbjct: 177 RLPVTAKTRIGWDERSISILDTVRRLEGCGIQALSIHGRTRAQMYKGRADWSWIA--RAK 234 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPG 241 E IP + NG I + E+AK +DGVM+GR A NP Sbjct: 235 EVATIPIIG------------------NGDIWTAEDAKRMFDETGVDGVMIGRGAIGNPF 276 Query: 242 ILAAVDREIFGSSD----TDADPVAV-VRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 + I T + VAV +R + +ER+ + L + RH +G+P Sbjct: 277 LFREAKHLIQTGEHLPQATHRERVAVAIRHLEMSLERKGEKYGVL-EMRRHYSTYLKGLP 335 Query: 297 GARQWRRYL-SENAHKAGADINVLEHALK 324 + R YL EN D N++ AL+ Sbjct: 336 NVSKVRDYLVREN------DPNLIVEALR 358 >UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31II6_THICR Length = 320 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 147/331 (44%), Gaps = 49/331 (14%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEEEHPVALQ 69 ++APM TDR R R S + +EMV + + A E P +Q Sbjct: 12 IALAPMAGITDRVYRDICRE-SGASYAVSEMVASKKQLRESAKSSTRHADKTETSPRIVQ 70 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 L G+ P L A +++G D I+LN+GCP+ +V + G+ LMG + VAD K++ + Sbjct: 71 LLGTHPEELVDAALWQQSQGADIIDLNMGCPAKKVCDVAAGSALMGQPERVADIFKSLTE 130 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVS-GKGECEM----FIIHARKAWLSGLSPKE 184 + +PVTVK R G D D IN V K E+ IH R + Sbjct: 131 AIDLPVTVKIRTGTD--------VDNINAVEIAKLAQELGLKAITIHGRT--------RA 174 Query: 185 NREIPPLDYPRVYQLKR--DFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNP 240 ++ +Y + +K+ D P + NG I S +EA+ L++ DG+M+GR A P Sbjct: 175 DKFNGQAEYDTIKAVKQAVDIPVIA---NGDICSPKEAQFVLKYTGSDGIMIGRAAQGYP 231 Query: 241 GILAAVDREIFGSSDT-DADPVAVVRAMYPYIERELSQ-----GTYLGH-ITRHMLGLF- 292 I REI T D P + R S+ G +LGH I R LG + Sbjct: 232 WIF----REIAHFLKTGDCLPSPSFAEFQQVMTRHFSELEILYGEHLGHKIARKHLGWYS 287 Query: 293 QGIPGARQWRRYLS--ENAHKAGADINVLEH 321 Q +P + R+ + EN A +N++ H Sbjct: 288 QYLPNGTELRKRFNRLENTQ---AQLNLINH 315 >UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteobacteria RepID=Q2LR94_SYNAS Length = 326 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 76/291 (26%), Positives = 137/291 (47%), Gaps = 28/291 (9%) Query: 30 LRLLSRNT---LLYTEMVTTGAIIHG---KGDYLAYSEEEHPVALQLGGSDPAALAQCAK 83 R+++R L +TEM++ ++ G Y+ ++ P+ +Q+ G+DP +A + Sbjct: 26 FRMMAREAGCALAFTEMISANGLVRGIEKSQQYMKSCIDDKPLGVQIFGNDPTTMADAVR 85 Query: 84 LAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGI 143 + + G D I+LN+GCP +V GA L+ + LV+ ++++R P+TVK R G Sbjct: 86 IVDDYGADLIDLNMGCPVKKVVKNGAGAALLKDPGLVSQILESVRKATRKPLTVKIRSGW 145 Query: 144 DDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDF 203 + Q I G + +HAR A + G + D+ + ++K Sbjct: 146 NLQSINAVQIARIAEQQG---IDAVFVHARTA-VQGFAGSA-------DWRIIEEIKNSV 194 Query: 204 PHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGIL-AAVDREIFGSSDTDADP 260 + NG +KS +A ++ DGVM+GR A NP I A++ + + T ++P Sbjct: 195 GIKVIG-NGDVKSGADAWRMIKMTGCDGVMIGRGALGNPWIFNEALNYQ--STVQTHSEP 251 Query: 261 VAVVRA--MYPYIERE---LSQGTYLGHITRHMLGLFQGIPGARQWRRYLS 306 V R + ++ERE L Q + +H+L +GI G +R ++ Sbjct: 252 VLNERKEMILRHLERETIFLGQKEAVKRFRKHLLWYTKGIRGGASFRSRVT 302 >UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLJ7_ACIFE Length = 331 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 83/311 (26%), Positives = 135/311 (43%), Gaps = 37/311 (11%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE---EEHPVALQ 69 ++APM TD R R L + + +EMV+ A++ A E EHPVA+Q Sbjct: 19 IALAPMAGVTDLPFRVICRELGADYTV-SEMVSAKALLFKNPKTFAMLEVDPREHPVAIQ 77 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 L GS P L + AK+ G D I+ N+GCP ++ G+ LM + + C+ A+ D Sbjct: 78 LFGSVPEELVKGAKIVAEHGADIIDFNMGCPVHKIVANGEGSALMKDPERAYACLAALVD 137 Query: 130 VVSIPVTVKTRIGIDD--QDSYEFLCDFINTVSGKGECEMFIIHARK--AWLSGLSPKEN 185 V PVTVK R G D+ +++ E I ++ K +H R + SG + Sbjct: 138 AVDRPVTVKFRAGWDEDHRNAVE-----IARLAEKAGVAAVAVHGRTRGQFYSGKA---- 188 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGIL 243 D+ + Q+K + NG + + ++A L H DGVM+ R A NP I Sbjct: 189 ------DWDIIRQVKEAVSIPVLG-NGDVFTAQDALDLLAATHCDGVMIARGAQGNPWIF 241 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIEREL-------SQGTYLGHITRHMLGLFQGIP 296 V + G + P + + + R L + + + H F G+P Sbjct: 242 REVQAVLAGKT----IPPVTLEERFAMVRRHLRDLTAFKGEKVAIREMRHHGACYFTGLP 297 Query: 297 GARQWRRYLSE 307 + +R +++ Sbjct: 298 HSAHYRNAINQ 308 >UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDP2_9FIRM Length = 321 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 99/319 (31%), Positives = 137/319 (42%), Gaps = 60/319 (18%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYT--EMVTTGAIIHGKGDYLAY---SEEEHPVALQ 69 +APM TD R R N YT EMV+ A+++ A +EHP A+Q Sbjct: 13 LAPMAGVTDLPFRVICR---ENGADYTVSEMVSAKALLYKNQKTFAMLTIDPKEHPTAIQ 69 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 L GS P+ LA K+ E+RG D I++N+GCP ++ + G+ LM + V + A+ D Sbjct: 70 LFGSVPSELAAAGKIVESRGADMIDVNMGCPVHKIVSNGEGSALMKDPDKVYAILAALVD 129 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR--------KA-WLSGL 180 VSIPVTVK R G D+ I ++ K +H R KA W Sbjct: 130 AVSIPVTVKFRAGWDEAHKN---AAVIAQMAEKAGVSAVCVHGRTRAQFYQGKADWDIIR 186 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQ 238 + KE+ IP L NG I E+A + DGVM+ R A Sbjct: 187 AVKESVGIPVLG------------------NGDIFHAEDALRMKEETGCDGVMIARGAEG 228 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG-IPG 297 NP I V + G + + PV+ V+ + I R L H L LF+G G Sbjct: 229 NPWIFRDVKALLHGKAIS---PVS-VQERFAMIRRHL-----------HDLILFKGERVG 273 Query: 298 ARQWRR----YLSENAHKA 312 R+ R YL+ H A Sbjct: 274 VREMRHHGAMYLTGLPHSA 292 >UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=2 Tax=Planctomycetaceae RepID=A6CBK4_9PLAN Length = 365 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 110/237 (46%), Gaps = 16/237 (6%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE---EEHPVAL 68 R+ ++P+ +T+ R +R L L T++V ++ G L ++ E+ P A+ Sbjct: 29 RYLLSPLAGYTNLPFRRIVRELGGVGLATTDLVNARGLLEGSEKTLQLTQTCPEDSPFAV 88 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ GS+P + A+L E+RG I++N+GCP +R+ G GA +M V+ + Sbjct: 89 QIFGSEPQQMKDAAQLLESRGVHSIDINMGCPVNRIVKGGAGASMMCRPSDTVSLVQTVV 148 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 + V IPV+VK R+G DD E F + K IH R +E Sbjct: 149 EAVKIPVSVKMRLGWDDS---ELSAPFFSREFEKVGVVAVAIHGRT--------REQGFR 197 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREAYQNPGIL 243 +++ + ++ + + NG + ++ EA L+ GV +GR A NP I Sbjct: 198 GVVNHDGIRRVVEAVDSIPVIGNGDVTNVAEADFMLKTTGCAGVSIGRGALANPWIF 254 >UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NNQ3_PHYIN Length = 377 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 115/239 (48%), Gaps = 27/239 (11%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH----PVALQL 70 VAPM+D ++ R R L + YT M+ + + +Y E H P+ +Q Sbjct: 28 VAPMVDQSELAFRMLCRKLGADCC-YTPMLHS-RLFAESAEYREKMFEHHIQDRPLVVQF 85 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G+DP + AK+ E D ++LN+GCP + G +G+ LM + + V VK + Sbjct: 86 CGNDPKTVLAAAKMVEGHC-DAVDLNLGCPQGIARKGHYGSFLMHDKETVKATVKTLSAG 144 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE-NREIP 189 ++IPVTVK R+ DD ++ EF D + C++ +H R ++ + +E N +I Sbjct: 145 LNIPVTVKIRVFPDDNETLEF-ADMLQEAG----CDLLTVHGRTKEMNKTAVREVNWDI- 198 Query: 190 PLDYPRVYQLKRDFPHLTMSI--NGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILA 244 ++R LT+ + NGGI++ E+ L+ DGVM +NP + A Sbjct: 199 ---------IRRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALFA 248 >UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGI4_DESAA Length = 332 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 80/319 (25%), Positives = 145/319 (45%), Gaps = 38/319 (11%) Query: 30 LRLLSRN---TLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVALQLGGSDPAALAQCAK 83 LRL+++ L+ +EM+++ +I + + +A EEE P+++Q+ GSDP LA A+ Sbjct: 26 LRLMAKRHGAALVCSEMISSNGLIRYQKKTMELMASKEEERPLSIQIFGSDPGVLADSAR 85 Query: 84 LAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGI 143 + G D +++N GC +V G G+ LM + +K +R +S+P T+K R G Sbjct: 86 IVAEHGADIVDINFGCSVKKVLKGGAGSALMADLPRAEKILKEVRKAISLPFTIKMRSGW 145 Query: 144 DDQDSYEFLCDFINTVSGKGECEMFIIHAR--KAWLSGLSPKENREIPPLDYPRVYQLKR 201 D I +G + +H R K SG S D+ ++ +LK+ Sbjct: 146 DASGDEAMALGRIAQDAG---VDAVALHPRTAKQGFSGHS----------DWSQIKRLKQ 192 Query: 202 DFPHLTMSI--NGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAVDREIFGSSDTD 257 + LT+ + NG + E ++ DGVM+GR P I + + Sbjct: 193 E---LTIPVIGNGDVTKPEHVLEMMEQTGCDGVMIGRAVLYAPWIFRQALCLLENRPMEE 249 Query: 258 ADPVAVVRAMYPYIERELSQGTYLGH-----ITRHMLGLF-QGIPGARQWRRYLSENAHK 311 D + ++ Y++ + YLG + R L F +G+P A ++R ++ A K Sbjct: 250 IDLDDRKKVLFDYLDDTMD---YLGEEHGCRVMRSRLAWFVKGLPNAAKFRGEITRIASK 306 Query: 312 AGADINVLEHALKLVADKR 330 A +++E + + +R Sbjct: 307 EQAR-DLIEEFFRSIEKRR 324 >UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaproteobacteria RepID=Q0BSS6_GRABC Length = 370 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 111/235 (47%), Gaps = 22/235 (9%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPV------AL 68 +APM TD R R + ++ +EM+ + A++ L +E P AL Sbjct: 45 LAPMSGVTDLPFRMLAREMGTG-MVVSEMIASWAMVRENKTTLRMAEPAGPPSPGSPNAL 103 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQLVADCVKAM 127 QL G DP A+A+ A++A +G + I++N GCP +V G G+ LM + A ++A Sbjct: 104 QLAGCDPEAMAEAARIAIDKGAELIDINFGCPVKKVAVGQSAGSALMRDEVTAAKILEAT 163 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 VS+PVT+K R+G D Q I SG M +H R ++ Sbjct: 164 VKAVSVPVTLKMRMGWDHQSLNAPALAKIAEASG---IRMITVHGRT--------RQQFY 212 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA--HLQHMDGVMVGREAYQNP 240 D+ V ++K+ L + +NG I+++E+A + DGVMVGR Y P Sbjct: 213 EGKADWAFVARVKQA-TSLPVIVNGDIQTVEQAAEARAISGADGVMVGRGCYGRP 266 >UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256J2_CHLFF Length = 339 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 69/241 (28%), Positives = 107/241 (44%), Gaps = 23/241 (9%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVALQLGG 72 AP+ ++D R L L++ EMV + + L YSE P+ QL G Sbjct: 19 APLAGFSDYPYRRMSSLYGLPALMFCEMVKIEGLHYSPSRTLKLLEYSESMRPIGGQLCG 78 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 S P + AK+ E G+D I+LN GCP+DR+ G+ L+ +L+ ++ + VS Sbjct: 79 SKPEMAGEAAKVLEGLGFDLIDLNCGCPTDRITKDGSGSGLLKTPELIGKVLEKIIGSVS 138 Query: 133 IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLD 192 IPVTVK R G D + + + + + G +F +H R + + P + Sbjct: 139 IPVTVKIRSGWDGNNIN--VEETVRIIKEAGASAVF-VHGRT--------RAQGYVGPSN 187 Query: 193 YPRVYQLK----RDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAV 246 + + K +DFP NG + S E AK L DGV+V R P I + Sbjct: 188 LEYIARAKAAAGKDFPVFG---NGDVFSPEAAKLMLDSTGCDGVLVARGTMGAPWIARQI 244 Query: 247 D 247 + Sbjct: 245 E 245 >UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A4W7_NITMS Length = 320 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 75/310 (24%), Positives = 136/310 (43%), Gaps = 25/310 (8%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK----------GDYLA 58 +S R +APM +D R + + L+ TE + +II + +++ Sbjct: 5 FSSRAFLAPMAGVSDPALRLQCKKMGAG-LVVTEFTSIHSIIAKEEQLKENMKTIQEFIE 63 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 +SE+E P+++QL GSD AL + A + E +D I+ N+GCP+ + M G L+ Sbjct: 64 FSEQERPISVQLFGSDLYALEKAATIVEPY-FDIIDYNMGCPAPHITQQMAGGALLQEVN 122 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 L + + + V PVT+K R G+ D+ +FL I ++ +M H R Sbjct: 123 LTQQIFETLVNAVKKPVTLKIRSGV--TDASKFLFRDIAEIAEDQGIQMITFHPRTVS-Q 179 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREA 236 G S D+ + +LK + ++ + NG I + E+AK L D VM+GR A Sbjct: 180 GYSGSA-------DWKLIKELK-EISNIPVVGNGDITTPEDAKMMLDETGCDYVMIGRGA 231 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 NP + ++ + S + + + + Y+ +I + +G+ Sbjct: 232 MGNPFLFEQINDYLKTGSYKEYSFKDRLDSFFDYLHLTNQYKIKFSNIKSQAMRFTKGLK 291 Query: 297 GARQWRRYLS 306 G + R ++ Sbjct: 292 GGSKLRSKIT 301 >UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3 n=6 Tax=Clostridia RepID=Q2RM54_MOOTA Length = 334 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 97/337 (28%), Positives = 146/337 (43%), Gaps = 46/337 (13%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNT---LLYTEMVTTGAIIHGKGD---YLAYS 60 V + +APM +TDR RLL+R L YTEM++ +I+ + L Sbjct: 10 VTLAAPLIMAPMAGYTDR----VFRLLAREAGAALTYTEMISAQGLIYNNKNTHALLDLK 65 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E PVA+QL G +P +A ++A A G I+LN+GCP+ ++ G+ LM + Sbjct: 66 GEPGPVAVQLFGREPEIMAAATRIAVAAGAAIIDLNMGCPTPKIVKNGEGSALMRDLPRA 125 Query: 121 ADCVKAM-RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 A V AM R +PVTVK R+G D+DS + V R + SG Sbjct: 126 AAIVAAMVRAAGPVPVTVKMRLGW-DEDSINVVEAARAVVYAGAAAVAIHGRTRSQFYSG 184 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAY 237 + Y R + D P + NG +++ +A L DGVMVGR A Sbjct: 185 RA--------DWSYFRRVKEAVDVPVIG---NGDVRTARDAVTMLAETGCDGVMVGRGAV 233 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELS-------QGTYLGHITRHMLG 290 NP +L A+ + G + P VR R L + T + + +H+ Sbjct: 234 GNPWLLTAIRAVLEGRPE---PPPVDVRTRMTMACRHLKLLVELKGETTAVKEMRKHLAC 290 Query: 291 LFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVA 327 F+G+PGA + R+ IN L A +++A Sbjct: 291 YFRGLPGAARLRQ-----------QINTLTTAAEVIA 316 >UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=Alphaproteobacteria RepID=DUS_RHOCA Length = 324 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 117/251 (46%), Gaps = 27/251 (10%) Query: 15 VAPMLDWTDRHCRYFLRLLSR--NTLLYTEMVTTGAIIHGKGDYLAYSEEEH----PVAL 68 +APM TD F R+++R L+ +EMV +G ++ K A ++ E P ++ Sbjct: 16 LAPMAGITDLP---FRRMVARFGAGLVVSEMVASGEMLTAKPSVRAKAQAELTAGLPTSV 72 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 QL G + A +A+ AK+ G + I++N+GCP+ +V G+ GA LM N ++A+ Sbjct: 73 QLAGREAAPMAEAAKIVADMGAEIIDINMGCPAKKVTGGLSGAALMRNPDHALRLIEAVV 132 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK--AWLSGLSPKENR 186 V +PVT+K R+G D+ +G +M +IH R + +G + Sbjct: 133 GAVDLPVTLKMRLGWDEDQLNAAEIAARAEAAG---VKMIVIHGRTRMQFYTGAA----- 184 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILA 244 D+ R R + + NG I A+ L GVMVGR A P LA Sbjct: 185 -----DW-RAIAAVRAAVSVPVVANGDITDAASARRALDQSGAAGVMVGRGAQGAPWRLA 238 Query: 245 AVDREIFGSSD 255 + +FG +D Sbjct: 239 QIAAALFGKAD 249 >UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellular organisms RepID=D1BLD4_VEIPT Length = 328 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 87/308 (28%), Positives = 136/308 (44%), Gaps = 28/308 (9%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRN---TLLYTEMVTTGAIIHGKG---DYLAYSEEEH 64 G+ +APM +D RLL++ L+ TEMV+ I + + L + E Sbjct: 15 GQAILAPMAGVSD----IAYRLLAKEHGAALVCTEMVSAMGIKYKNERTHELLRIEDVER 70 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 PV++Q+ GS+P A+A AK+ G D +++N+GCP +V G+ LM N L A Sbjct: 71 PVSMQIFGSNPEAIALGAKVVANAGADIVDINMGCPVKKVVTSGDGSALMKNPDLAARVA 130 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +A + V +PVTVK RIG D DS + DF + G +H R KE Sbjct: 131 EAAVEAVDVPVTVKMRIGW-DSDSIN-VVDFAKRIESTG-VAAIAVHGRT--------KE 179 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGI 242 D+ + +K + NG I E+AK L D VMVGR A NP I Sbjct: 180 QMYSGHADWSYIKAVKEAVSVPVLG-NGDIVEPEDAKQMLDETGCDAVMVGRGAQGNPWI 238 Query: 243 LAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 + + TD + + ++ + + + +G + I H +G+P + Sbjct: 239 FGRIHHYLATGEVLPGPTDIERLDMLLKHFDLLCQYKGEGMAVKEIRTHAGWYMKGLPES 298 Query: 299 RQWRRYLS 306 WR ++ Sbjct: 299 AYWRNRVN 306 >UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostridia RepID=C8W3U6_DESAS Length = 322 Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 32/252 (12%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNT---LLYTEMVTTGAIIHGKGD---YLAY 59 +V R APM TDR R+L++ L+ TEM++ A+++G L Sbjct: 6 NVTIKNRVISAPMAGITDRA----YRILAKEAGCGLVCTEMISDQALLYGNPKTNILLDC 61 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 + E P+++Q+ GS P +A+ A + EARG I++N+GCP+ ++ GA LM +L Sbjct: 62 TGETPPISMQIFGSSPEYMARAASITEARGASIIDINMGCPTPKIVKNGEGAALMRKPEL 121 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIH--ARKAWL 177 + + V +PVTVK R G D+ + +G + +H R + Sbjct: 122 AQKIISDVVQSVRVPVTVKIRKGWDESFPNAVEMALLAEEAG---AKAVTVHGRTRSQFY 178 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSI--NGGIKSLEEAKAHLQHM--DGVMVG 233 SG + D+ + +K+ +T+ + NG I+ +A L H D VM+G Sbjct: 179 SGKA----------DWDIIKSVKK---AVTIPVIGNGDIREPRDAVRMLMHTGCDAVMIG 225 Query: 234 REAYQNPGILAA 245 R + NP I ++ Sbjct: 226 RASLGNPWIFSS 237 >UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes RepID=A9NE09_ACHLI Length = 336 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 89/320 (27%), Positives = 135/320 (42%), Gaps = 41/320 (12%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY---SEEEHPVAL 68 + +APM ++ R R L +++ EMV+ AI L + EE P A Sbjct: 13 KLILAPMAGVSNHPFRLMARQLGAG-VVFAEMVSDKAIFFQNPKTLQMLYMTVEEKPAAQ 71 Query: 69 QLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNG-MFGACLMGNAQLVADCVKA 126 Q+ GSD + + A + D I++N+GCP +V G GA LM + Q + D VKA Sbjct: 72 QIFGSDLETMVEAAMFIDKNSNCDFIDINMGCPVPKVAIGAQAGASLMKDPQKIYDIVKA 131 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVS-----GKGECEMFIIHARKAWLSGLS 181 +++ VS PVTVK R G D + +N V K + +HAR G S Sbjct: 132 IKEKVSKPVTVKIRSGWDSES--------VNAVEVAKMIEKAGASLITVHAR-TRAQGYS 182 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQN 239 + P LD + + P + NG I + AK L++ D VM+GR + N Sbjct: 183 GE-----PDLDVIKAVKEAVSIPVIG---NGNIVDGKSAKHMLEYTGCDAVMIGRASLGN 234 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIEREL-------SQGTYLGHITRHMLGLF 292 P I REI + + PV + + R + T + H Sbjct: 235 PWIF----REINAYLNGEETPVRTYEEVKTLMIRHFDDLAKLKGEHTACLEMRSHGPWYL 290 Query: 293 QGIPGARQWRRYLSENAHKA 312 +G+P A Q R L+ ++A Sbjct: 291 KGLPKASQVRAKLARTTNRA 310 >UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genome shotgun sequence n=4 Tax=Intramacronucleata RepID=A0EG06_PARTE Length = 360 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 118/244 (48%), Gaps = 27/244 (11%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSR---NTLLYTEMVTTGAIIHGKG---DYLAYSEEE 63 S +F APM+D ++ R+L+R TL YT M+ + + K ++ E+ Sbjct: 17 SPKFICAPMVDQSE----LAFRMLTRKYGTTLAYTPMLHSRIMTESKSYKDEFFTTCPED 72 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P+ QL G DP L + A + + + D I++N+GCP + G++GA L+ + V Sbjct: 73 RPLFAQLCGHDPQVLIKAALMIQDQC-DAIDINLGCPQGIARKGLYGAYLLEKREQVLTI 131 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 VK ++ +++PVT K R+ D + + + D + C + +H R + + Sbjct: 132 VKELKQNINVPVTCKIRMFKDRKRTLDLTKDI-----QEAGCSILTVHGR-------TKE 179 Query: 184 ENRE-IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNP 240 +N++ + D+ + ++K+ + + NGGI + + + LQ +D VM +NP Sbjct: 180 QNKDFVGQCDWTIIAEIKQ-ILQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENP 238 Query: 241 GILA 244 + + Sbjct: 239 ALFS 242 >UniRef50_D2VPF2 Predicted protein n=2 Tax=Naegleria gruberi RepID=D2VPF2_NAEGR Length = 450 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 43/254 (16%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRN---TLLYTEMVTTGAIIHGKGDYLAYSEE---- 62 S ++ VAPM+D ++ RLLS+ TL YT M HG Y AY ++ Sbjct: 102 SPKYVVAPMVDQSEMA----FRLLSKEYGATLAYTPM------FHGM--YFAYHKKYRAR 149 Query: 63 --------EHPVALQLGGSDPAALAQCAKLA---EARGYDEINLNVGCPSDRVQNGMFGA 111 E PV Q +DP QC K + I+LN+GCP + G +G+ Sbjct: 150 FYQFNPDLEGPVFAQFCTNDPETFVQCGKRVWDLSKQKISAIDLNLGCPQRIARRGRYGS 209 Query: 112 CLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIH 171 LM + Q V + + +PVT K RI D E +++ TV G ++ +H Sbjct: 210 FLMEDLQTVHSIINKAHLELPMPVTAKIRIFED----LELTMNYVKTVVDAG-AQVLCVH 264 Query: 172 ARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDG 229 R G + D+ + ++ FP + M NG I++ ++ + L++ +D Sbjct: 265 GRTREQKGANQNY------ADWTVIRAIREQFPQIPMIANGNIRTFQDVQDCLEYTRVDA 318 Query: 230 VMVGREAYQNPGIL 243 VM G +NP + Sbjct: 319 VMSGEGLLENPALF 332 >UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteurellaceae RepID=DUSB_HAEIN Length = 330 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 118/248 (47%), Gaps = 26/248 (10%) Query: 12 RFSVAPMLDWTD----RHCRYFLRLLSRNTLLYTEMVTTG-AIIHGKGDYL--AYSEEEH 64 R +APM TD R C Y+ L ++EM++T + H + L A+SE+ Sbjct: 11 RVLLAPMAGITDQPFRRLCAYY-----GAGLTFSEMMSTNPQVWHTEKSKLRLAHSEDLG 65 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 A+Q+ GSDP +AQ A + G I++N+GCP+ +V + G+ L+ LV + Sbjct: 66 LNAVQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSALLQFPDLVEKIL 125 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 + + V++PVT+K R G D + C I ++ + + +H R + L E Sbjct: 126 REVVSAVNVPVTLKIRTGWDKSNRN---CVQIGKIAEQCGIQALTVHGRTR--ACLFEGE 180 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGI 242 +Y + +K+ + + NG I S +AK L + D +M+GR A NP + Sbjct: 181 ------AEYDNIKAVKQAIA-IPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWL 233 Query: 243 LAAVDREI 250 AV+ I Sbjct: 234 FQAVENLI 241 >UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E3_HALNC Length = 333 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 79/290 (27%), Positives = 128/290 (44%), Gaps = 25/290 (8%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY---SEEEHPVALQ 69 ++APM +DR R R L+ TEM++ + S + P A+Q Sbjct: 26 LALAPMAGVSDRPFRQLCREYGAG-LVVTEMMSAKPELQSSAKSRLRQIDSNDIEPRAVQ 84 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 L G+DP LA+ A+ A ++G I+LN+GCP+ +V G+ LM VA ++A+ Sbjct: 85 LLGNDPFELAEAARFAVSQGAQLIDLNLGCPAKKVCKRAAGSALMAEPDTVARLLEALVA 144 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 V PV++K R G D + I ++ M IH R + +R Sbjct: 145 AVDCPVSLKMRTGPDREWRNAVA---IAKIAENAGISMLSIHGRT--------RADRYEG 193 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREAYQNPGILAAVD 247 +Y + ++ L + NG I + ++A+ + H G+MVGR A+ P I +A+ Sbjct: 194 EAEYDTIAEVVAAV-DLPVFANGDITTPQKARQVIAHTGAAGIMVGRGAFGQPWIFSALK 252 Query: 248 REIFG----SSDTDADPVAVVRAMYPYIERELSQGTYLG-HITRHMLGLF 292 E+ G S A+ V ++ + I G LG I R LG + Sbjct: 253 AELTGQPLPSPPDRAERVVAIKKQFEKIYHHY--GDSLGIRIARKHLGWY 300 >UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organisms RepID=C1FNC8_CLOBJ Length = 323 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 116/246 (47%), Gaps = 23/246 (9%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEEHPVALQLG 71 +APM +TD R + L L+YTEMV+ A+ + + S +E PVALQL Sbjct: 14 LAPMAGFTDIAFREICKELGCG-LVYTEMVSAKALYYESNNTKELCVISNKEKPVALQLF 72 Query: 72 GSDPAALAQCAKLAEARGYDEI---NLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 G +P +A + D++ ++N+GCP+ ++ G+ LM + +L ++ +KAM+ Sbjct: 73 GHEPEIMANAVEFF--NNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPKLASEIIKAMK 130 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 V P+TVK R G D + +F + G + IH R +E Sbjct: 131 KVAKKPITVKFRKGFDKNNIN--AVEFAKIMEQSG-VDAITIHGR--------TREQMYE 179 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAV 246 D+ + ++K + + NG + S E+A + DG+M+GR A NP I + Sbjct: 180 GKADWAIISKVKNSVS-IPVIGNGDVFSSEDALEMINKTDCDGIMIGRGAQGNPWIFKQI 238 Query: 247 DREIFG 252 + +I G Sbjct: 239 NEKIKG 244 >UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKT6_9GAMM Length = 330 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 116/251 (46%), Gaps = 19/251 (7%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEHPVALQLG 71 +APM +DR R R L + + +EMVT+ + G L + +E P +QL Sbjct: 15 LAPMAGVSDRPLRLIARRLGASAAV-SEMVTSDTRLWGSDKSRHRLDHRQEPRPRIVQLL 73 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G++P LA+ A+ RG D I+LN+GCP+ +V + G+ L+G + V + + A+ + V Sbjct: 74 GNEPEPLAEAARENVRRGADVIDLNLGCPAKKVCSKAAGSALLGEPERVRELLTALVESV 133 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 +PVT+K R+G+D + + I ++ M +H R + + Sbjct: 134 EVPVTLKMRLGLDRE---RVNAETIAGIAQDCGIAMLTVHGRT--------RADAYRGTA 182 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAVDRE 249 DY + ++ R + + NG + + A+ L G+M+GR A P + + R Sbjct: 183 DYEAIARVVRAV-SIPVLANGDVVDIGSARRALAISGATGLMIGRGAQGRPWLPGQI-RA 240 Query: 250 IFGSSDTDADP 260 ADP Sbjct: 241 SLAGEPVPADP 251 >UniRef50_B2KES4 Dihydrouridine synthase DuS n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KES4_ELUMP Length = 318 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/270 (29%), Positives = 126/270 (46%), Gaps = 29/270 (10%) Query: 15 VAPMLDWTDR----HCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVA 67 +APM TD HC L + ++ EMV+ A+ + LA ++EHPV+ Sbjct: 21 LAPMAGITDTPFRIHC-----LNNGAGIVCAEMVSAKAVEYDNKKSVKMLAVDKKEHPVS 75 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +Q+ G D +++ AK AEA G D I++N GCP ++ G L+ + +L+A V A Sbjct: 76 MQIFGGDAESISIAAKAAEAAGADIIDINAGCPVKKINRAGAGCVLIKDEKLLASIVNAA 135 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + VSIPVT+KTRIG+ D F D I ++ I+HAR A N Sbjct: 136 VNSVSIPVTLKTRIGLTAGD---FKGDKIAKLAENEGAAAVIMHARYAG--------NVH 184 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPGILAAV 246 P D + ++ + NGGI + A + + G+MVGR A N I Sbjct: 185 GGPADLEALAKVVSAVKIPVIG-NGGIVDVNTADKMFETGVRGIMVGRGAIGNINIF--- 240 Query: 247 DREIFGSSDTDADPVAVVRAMYPYIERELS 276 + I D + +P V+ + I++ ++ Sbjct: 241 -KSIINGCDIELNPKENVKIFFNLIKQNVN 269 >UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax=Cyanobacteria RepID=DUS1_SYNY3 Length = 355 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/329 (24%), Positives = 142/329 (43%), Gaps = 52/329 (15%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG--DYLAYSEEEHPVALQ 69 R +P+ TD R +R + +LYTEMV+ I H + + E+P+++Q Sbjct: 43 RVLQSPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEIHHLRTLPQVMEIDPRENPISIQ 102 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 L P +A+ A+ A A+G +++N+GCP +++ G+ L+ + VK + Sbjct: 103 LFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQPAVAEAIVKTVVA 162 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIH-----------ARKAWLS 178 V +PVTVKTR+G DD + + +F + G +M +H AR W++ Sbjct: 163 AVDVPVTVKTRLGWDDGEIN--IVEFAQRLQDAG-AQMLTLHGRTRAQGYNGRARWQWIA 219 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQ 238 + K+ IP + ++ S+ I LEE A DGVM R + Sbjct: 220 KV--KQALTIPVIANGDIF-----------SVEAAIACLEETGA-----DGVMCSRGSLG 261 Query: 239 NPGILAAVDREIFGSSDTDADPVAV---------VRAMYPYI-ERELSQGTYLGHITRHM 288 P ++ ++ F + + P ++ ++ Y +R L Q +H+ Sbjct: 262 YPFLVGEIE-HFFKTGEKRKAPTVAEKLTCAQEHLQMLWEYKGQRGLFQA------RKHL 314 Query: 289 LGLFQGIPGARQWRRYLSE-NAHKAGADI 316 + PGA R L + N+ + G D+ Sbjct: 315 AWYCKDFPGAAALREQLFQINSVQEGKDL 343 >UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales RepID=B9JW92_AGRVS Length = 332 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 114/240 (47%), Gaps = 20/240 (8%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE--HPVALQ 69 R +APM TD R L L+ TEMV + ++ + + + P +Q Sbjct: 20 RVVLAPMSGVTDLPFRQ-LAFRHGAGLVVTEMVASRELVFNAAESWSRLKGAGLTPHMVQ 78 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 L G DP +A+ AK+AEA G D I++N+GCP+ +V G G+ LM ++ ++A Sbjct: 79 LAGRDPHWMAEAAKIAEANGADIIDINMGCPAKKVIGGYAGSALMREPEIALAMIEATVK 138 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 VSIPVTVK R+G D DS D G + +H R + + E R Sbjct: 139 AVSIPVTVKMRLGW-DSDSIN-APDLSRRAQDAG-VQAITVHGR----TRMQFYEGRA-- 189 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNP---GILA 244 D+ + + RD ++ + NG I +L +A+ L+ D +M+GR P G+LA Sbjct: 190 --DWDAIAAV-RDAIYIPLIANGDIDTLGDAQEILRRSGADAIMLGRACQGRPWHAGVLA 246 >UniRef50_B1MZ90 tRNA-dihydrouridine synthase n=39 Tax=Bacteria RepID=B1MZ90_LEUCK Length = 378 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 27/250 (10%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY-----LAYSEEE-HPV 66 FS+APM TD R + + YTE +++H K + LA +E E PV Sbjct: 31 FSLAPMEAVTDTIFRRVVAQAGPPDVYYTEFTNASSMVHPKAKFSVQGRLAVAENEAQPV 90 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 A Q+ GS P +A AK+ GY +++N+GCP V G+ L+ + L + A Sbjct: 91 A-QIWGSRPEDIAGAAKILPTMGYRAVDINMGCPDATVIKNGAGSDLIRHDDLAEKIISA 149 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + +PV+VKTR+G + + D++ + + + +H R S KE Sbjct: 150 AK-TSGLPVSVKTRLGFYHAEEFR---DWLPIIL-RQNVAVLTVHLR-------SRKEMS 197 Query: 187 EIPP-LDYPRVYQLKRD--FPHLTMSINGGIKSLEE----AKAHLQHMDGVMVGREAYQN 239 + P ++Y RD P + ING IK+ E AK H +DG+M+GR ++N Sbjct: 198 KAPAHVEYIDEILAMRDKLAPKTLIQINGDIKTRAEGLALAKIH-PGIDGIMIGRGIFEN 256 Query: 240 PGILAAVDRE 249 P + R+ Sbjct: 257 PYAFEKIPRQ 266 >UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisella RepID=A0Q6L0_FRATN Length = 328 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 79/322 (24%), Positives = 139/322 (43%), Gaps = 34/322 (10%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 D+ +APM + D R + L+YTEMV+ A++ + L Sbjct: 7 DIEIENNVVLAPMAGFCDSAFRTICKEHGAG-LIYTEMVSNKAVVERNWETMEMLYMENS 65 Query: 63 EHPVALQLGGSDPAALAQCAK-LAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQLV 120 E P+ +Q+ G+D + K +AE D +++N+GCP +V + GA L+ + + Sbjct: 66 EKPLGIQIFGTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRI 125 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECE-----MFIIHARKA 175 + + A+ V PVTVK RIG DD++ IN + CE IH R Sbjct: 126 HEILTAVVKAVHKPVTVKMRIGWDDKN--------INAIEVAKACEDAGVSAIAIHGR-- 175 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVG 233 +E ++ + +++ + + NG + AKA ++H +D VMVG Sbjct: 176 ------TREQMYTGKANWDIIRDVRKAVDIVVIG-NGDVFCPHSAKAMIEHTGVDAVMVG 228 Query: 234 REAYQNPGILAAVDREI-FGSSDTDADPVAVVRAMYPYIERELSQGT---YLGHITRHML 289 R + NP I + + + G PV V + ++ R + T + I H Sbjct: 229 RASRGNPWIFRQIAKYLNTGELIPPPTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHAS 288 Query: 290 GLFQGIPGARQWRRYLSENAHK 311 Q +P ++++R L++ H+ Sbjct: 289 FYLQDLPNSKEFRMKLNQLEHE 310 >UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGV0_PLALI Length = 322 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 108/240 (45%), Gaps = 25/240 (10%) Query: 57 LAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 L+ + E P Q+ G+D A + + A++ E G+ ++LN CP R+ G LMG Sbjct: 58 LSTTSAERPAVGQISGNDAAQIGEAARVIEELGFSMVDLNFECPIRRLVGRGEGGALMGQ 117 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGID-DQDSYEFLCDFINTVSGKGECEMFIIHAR-- 173 Q +A+ V A + VSIPVTVK R G +D+ + G I+HAR Sbjct: 118 PQRIAELVAAAKQAVSIPVTVKLRTGPKAGEDTAVETAQRVEQAGGAA----IILHARSV 173 Query: 174 -KAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGV 230 +A+L G D+ V ++K + +GG+++ ++A + L+ DGV Sbjct: 174 EQAYLGG-----------PDWQHVTRVKEAVSIPVLG-SGGVRTPQDAISFLESSGADGV 221 Query: 231 MVGREAYQNPGILAAVDREIFGSSD-TDADPVAVVRAMYPYIERELSQGTYLGHITRHML 289 +GR NP I +FGS + + P + + +E E Y H+ + L Sbjct: 222 AIGRGCLGNPWIFQQARTLLFGSREIIEPSPAERGKVLLALVEHEFE--FYSAHLAQKRL 279 >UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroidetes RepID=A0M6M9_GRAFK Length = 330 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/308 (25%), Positives = 138/308 (44%), Gaps = 42/308 (13%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEHPVALQLG 71 +APM D +D R + + ++YTE +++ +I L E+E PV +Q+ Sbjct: 16 LAPMEDVSDPPFRALCKEQGAD-VVYTEFISSEGLIREAAKSTMKLDIYEKERPVGIQIF 74 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G++ ++ Q ++ E G D I++N GCP +V + GA ++ + L+ +AM Sbjct: 75 GANLESMLQSVEIVEKSGPDIIDINFGCPVKKVVSKGAGAGILKDIDLMVSLTEAMVKNT 134 Query: 132 SIPVTVKTRIGIDDQDSYEFL----------CDFINTVSGKGECEMFIIHARKAWLSGLS 181 S+P+TVKTR+G D DS + + C I ++ G+ +M+ W Sbjct: 135 SLPITVKTRLGW-DHDSIKIVEVAERLQDVGCKAI-SIHGRTRAQMY--KGEADWAPIAE 190 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQN 239 K N PR+ H+ + NG + S E+A + +DG M+GR + Sbjct: 191 VKNN--------PRM--------HIPVFGNGDVDSPEKAMEMRDNFGLDGAMIGRASIGY 234 Query: 240 PGILAAVDREIFGSSDTDADPVAVVR--AMYPYIERELS-QGTYLG--HITRHMLGLFQG 294 P V + F + A P R A +++ + +G LG RH F+G Sbjct: 235 PWFFREV-KHYFETGKHLAPPTLEERVDAARRHLQMAIDWKGERLGVFETRRHYTNYFKG 293 Query: 295 IPGARQWR 302 IP +++R Sbjct: 294 IPHFKEYR 301 >UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae RepID=B9NQS6_9RHOB Length = 364 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 72/263 (27%), Positives = 115/263 (43%), Gaps = 34/263 (12%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPV- 66 H + +APM TDR R + ++ +EMV + ++ K +E V Sbjct: 46 HLTPPVLLAPMAGITDRPFRDLVMRFGAG-MVVSEMVASQEMVQAKPGVRERAELSADVE 104 Query: 67 --ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 A+QL G + +A+ A+ RG I++N+GCP+ +V NG G+ L+ + Sbjct: 105 NTAVQLAGREAHWMAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDHALTLI 164 Query: 125 KAMRDVVSIPVTVKTRIGIDDQ-----DSYEFLCDF---INTVSGKGECEMFIIHARKAW 176 +A+ V IPVT+KTR+G DD D D + T+ G+ C+ + R W Sbjct: 165 EAVVAAVDIPVTLKTRLGWDDSLLNAPDVARRAQDAGIQMVTIHGRTRCQFY--KGRADW 222 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGR 234 + + KE +P + NG I A+ L DGVMVGR Sbjct: 223 QAIGAVKEAVSVPVI------------------ANGDITGPGAARTALDQSGADGVMVGR 264 Query: 235 EAYQNPGILAAVDREIFGSSDTD 257 A P +LA + +++G + D Sbjct: 265 GAQGRPWLLAQICHDLYGIAPPD 287 >UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriaceae RepID=A5EVV4_DICNV Length = 318 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 24/212 (11%) Query: 45 TTGAIIHGKGDYLAYSEEE----------HPVALQLGGSDPAALAQCAKLAEARGYDEIN 94 T ++ + +LA E + P +QL G DP +A+ A++ +A G D I+ Sbjct: 39 TIAEMVDARPQFLAMPESQLRLQFDDDARFPKIVQLVGGDPYLMAETAQVMQALGCDVID 98 Query: 95 LNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 154 +N+GCP+ +V G+ L+ + V + + VVSIPVT+KTR+G ++Q + Sbjct: 99 INMGCPAKKVGKQNAGSALLSDLPQVEKILAQVTRVVSIPVTLKTRLGFNEQ---TMTIE 155 Query: 155 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 214 + ++ +H R + R Y + ++K L + +NG I Sbjct: 156 TVAKIAENTGVAALTVHGRT--------RAQRFNGTAHYDEIGRVKAQ-TSLPIIVNGDI 206 Query: 215 KSLEEAKAHLQH--MDGVMVGREAYQNPGILA 244 + +A+ +Q DGVM+GR A NP +LA Sbjct: 207 TTTAQAQDLIQQFGFDGVMIGRAACGNPWLLA 238 >UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3 n=4 Tax=Anaeromyxobacter RepID=Q2IG49_ANADE Length = 352 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 4/143 (2%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEH 64 + GR+ +AP+ +DR R R + + YTEMV+ ++HG YL +E Sbjct: 7 QFPGRYFLAPLAGVSDRPFRAICRRMG-ASFAYTEMVSAHGLMHGALQTSSYLDREPDED 65 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P A+Q+ S+P LA+ A +A G I++N+ CP +V GA + + + V + V Sbjct: 66 PFAVQIFASEPDVLARGAVVAVQAGAGMIDVNMACPVKKVCGSGAGAAMGRDPRKVEEAV 125 Query: 125 KAMRDVVSIPVTVKTRIGIDDQD 147 +A+R V +PVTVK R G D+ + Sbjct: 126 RAIRAAVPVPVTVKIRAGWDEGE 148 >UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH62_9BACT Length = 321 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 74/318 (23%), Positives = 147/318 (46%), Gaps = 33/318 (10%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVALQLG 71 +AP+ ++D R + +LY+EMV+ + Y+ + E EHP +Q+ Sbjct: 13 LAPLAGYSDSAFRQICKNWGAE-VLYSEMVSADGLTRNSAKTLQYVQFDESEHPFGIQIF 71 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 GS+P +A+ ++ D +++N+GCP +V G+ LM L VK +++ + Sbjct: 72 GSNPLIMARAVEVLLPLKPDFMDINMGCPVKKVIRKGAGSALMQTPSLAGKIVKEVKNAL 131 Query: 132 --SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGEC--EMFIIHARKA--WLSGLSPKEN 185 IP++VK R G + Q+ +++ EC + +H R + SG S Sbjct: 132 LGRIPLSVKFRSGWNFQNQ-----NYLQFGLMLQECGADFLCLHPRTSSQMFSGTS---- 182 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGIL 243 ++ ++ LK++ + + NG IK+ E+A+ + + DG+M+GR A P + Sbjct: 183 ------NWEQIKILKQNV-QIPVVGNGDIKTPEDAQRMITETNCDGIMIGRGALGKPWLF 235 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIEREL---SQGTYLGHITRHMLGLFQGIPGARQ 300 A + I + +V+ ++ ++++ L S+ + + H+ +GI G + Sbjct: 236 AQSRQLISTGTYNPVIQKEIVKTIFAHLDKALLYKSEDVVVREMRAHLCFYTKGILGGAE 295 Query: 301 WRRYL--SENAHKAGADI 316 R + +EN + A I Sbjct: 296 LRNQINHTENISELKAII 313 >UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJZ5_DESPS Length = 328 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 82/308 (26%), Positives = 132/308 (42%), Gaps = 39/308 (12%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEH 64 +S F +AP+ +TD R + + +EM++ + + + + LA EE Sbjct: 8 QFSSPFVLAPLAGYTDLSFRLLCHQFGADYTV-SEMISCHGLFYNQQRTLEMLASLPEER 66 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 PV+ QL G++P +A+ + D I++N+GCP +V GA LM +L D + Sbjct: 67 PVSFQLFGAEPDIMAKATLILNDFQPDMIDINMGCPVRKVTKKGAGAALMSTPELAYDVI 126 Query: 125 KAMRDVVSIPVTVKTRIGID--DQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 +++ D IPVTVK R G+ + + EF + T R SG++ Sbjct: 127 RSVVDNTDIPVTVKFRAGVSSTELNGVEF---GLMTERAGAAAVAVHGRTRAQAFSGVAD 183 Query: 183 ----KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREA 236 KE +E L P + NG I S ++ + DGVMVGR A Sbjct: 184 RGIIKEVKE--ALSIPVIG-------------NGDILSYQDGLDMMAETGCDGVMVGRGA 228 Query: 237 YQNPGILAAVDR--EIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 NP + A + I G + + ++ P +ER LG I HM F+ Sbjct: 229 LGNPWVFQASGKPANIHGLAAGALQHLLLMERFNP-VER------VLGLIKNHMSKYFKD 281 Query: 295 IPGARQWR 302 +PG+ + R Sbjct: 282 MPGSSRLR 289 >UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F181_9PROT Length = 341 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 74/251 (29%), Positives = 113/251 (45%), Gaps = 34/251 (13%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE---EEHPVALQLG 71 +APM TD R + L+ TEM+ + A+ G+ +E +EHPV++Q+ Sbjct: 22 LAPMAGITDLPFRRICKRFGVG-LMVTEMIASRAVDMGRERTERMAELGDDEHPVSIQIA 80 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 GSDP + + A+ A G D +++N+GCP ++ + G+ ++ + LVA + A+ V Sbjct: 81 GSDPEFVTEAARWAVGHGADFVDINMGCPVKKICKQVAGSAMLRDEALVARVLAAVVAAV 140 Query: 132 SIPVTVKTRIGIDDQDS--------YEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 +PVT+K R G DDQ E + TV G+ +MF H W K Sbjct: 141 DVPVTLKIRTGWDDQSKNVQNIARIAEDSGIQLLTVHGRTRAQMF--HGHACWEDIGLAK 198 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPG 241 IP + NG I E A+ ++ + DGVMVGR NP Sbjct: 199 AAVSIPVIG------------------NGDIVDAESAREMIRVSNCDGVMVGRAVQGNPW 240 Query: 242 ILAAVDREIFG 252 +L V I G Sbjct: 241 VLGEVHAAIAG 251 >UniRef50_D0NZC7 tRNA-dihydrouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NZC7_PHYIN Length = 199 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD------YLAYSEEEHPVALQLG 71 M + TD R + +++ ++++TE V+ A+ H L Y+E+E PV QL Sbjct: 1 MANVTDTAFRRLISEIAKPSVMWTEFVSCEALTHDPDSRRRMMTTLKYAEQERPVVAQLF 60 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA-MRDV 130 GS P + A + G+D I++N+GCP V + GA L+ L D V A R Sbjct: 61 GSKPEQFYESAMIVRDLGFDGIDINMGCPETNVNSQGSGAALILQPDLAVDIVAACKRGA 120 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR 173 ++PV++KTRIG D +++ + T + E+ IH R Sbjct: 121 GNLPVSIKTRIGFHHIDYTDWILRLLGT-----DPEVLTIHGR 158 >UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SUV4_ENCCU Length = 341 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 119/293 (40%), Gaps = 61/293 (20%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRN--TLLYTEMVTTGAIIHG-----KGDYLAYSEEEHP 65 F+VAPM+ ++ R RL R+ + YTEMV + + G K + SE + P Sbjct: 13 FAVAPMVGNSEEAWR---RLSKRHGANIFYTEMVHCDSFLRGSRNPVKNRWYTTSEGDRP 69 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + +Q+ G+ P + + A + + D I++N GCP + G +GA L N +L + VK Sbjct: 70 LVVQICGNSPEVMLEAALIIQDHC-DAIDVNFGCPQKVARKGGYGAYLQENWKLTGEIVK 128 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK----------- 174 + +++PV K R+ S E ++ + G C + +H R Sbjct: 129 VLSSGLNVPVFCKIRVF----GSIEKTVEYAKMIEEAG-CSLLAVHGRTRDQRGAAMGFA 183 Query: 175 AWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMV 232 +W + KEN IP L NG I + + L++ DGVMV Sbjct: 184 SWKHIRAIKENLRIPVLS------------------NGNIMTHHDVWRCLEYTGCDGVMV 225 Query: 233 GREAYQNPGILAAVDR--------------EIFGSSDTDADPVAVVRAMYPYI 271 G NP I DR E GS+D + R +Y Y Sbjct: 226 GEAHLHNPLIFTGEDRSCLEIIGEYLDICMEFPGSADVRHIKSHMFRLLYNYF 278 >UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia RepID=C9XSF8_CLODC Length = 322 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 117/252 (46%), Gaps = 28/252 (11%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNT---LLYTEMVTTGAIIH---GKGDYLAY 59 ++ + ++PM TD RL+ + LLYTEM+ A+ + L Sbjct: 5 NLELKNKVFLSPMAGVTD----LPFRLICKEQGCGLLYTEMINGKALCYDDENTKKMLKI 60 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 EEEHPVA+Q+ GS+P + + A++ + +++N+GCP+ +V G+ LM N +L Sbjct: 61 EEEEHPVAVQIFGSEPEFMGRAAEIMNDYSNEILDINMGCPAPKVVKNGDGSALMKNPKL 120 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEM--FIIHARKAWL 177 + ++A+ PVT+K R G DD + + +C + IH R Sbjct: 121 AEEVLRAVVKNSKKPVTLKIRKGWDDNS-----VNAVEIAKIAEDCGISALAIHGR---- 171 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGRE 235 +E D+ + ++K++ + + NG + ++E++ L D +M+GR Sbjct: 172 ----TREQFYTGKADWDIIAEIKKNL-SIPVIGNGDVFTIEDSINMLDKTGCDAIMIGRG 226 Query: 236 AYQNPGILAAVD 247 A NP I ++ Sbjct: 227 AQGNPWIFKRIN 238 >UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RTR9_RHORT Length = 362 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 37/220 (16%) Query: 38 LLYTEMVTTGAIIHGKGDYL-------AYSEEEHPVALQLGGSDPAALAQCAKLAEARGY 90 L +TEMV + ++ + + A + P A+QL G DP +A+ A+ E G Sbjct: 38 LSWTEMVASRELLRERARGVDPRLGGGAEAGRAGPFAVQLAGCDPLIMAEAARRVEGAGA 97 Query: 91 DEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDD--QDS 148 + I++N+GCP +V G+ G+ LM + L A ++A+ V++PV++K R+G DD +++ Sbjct: 98 ELIDINMGCPVRKVVGGLGGSALMRDLPLAARILEAVVGAVTLPVSLKMRLGWDDASRNA 157 Query: 149 YEF--LCDFIN----TVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRD 202 E L + TV G+ +M+ A D+P + +KR Sbjct: 158 VELARLAESAGISRLTVHGRTRAQMYDGRA-------------------DWPAIGLVKRA 198 Query: 203 FPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNP 240 L + NG + +L EA+ L DGVM+GR A P Sbjct: 199 V-SLPVIANGDVTNLSEAREILAVTGADGVMIGRAALGAP 237 >UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=2 Tax=Eumetazoa RepID=UPI000186DAF4 Length = 557 Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 120/256 (46%), Gaps = 23/256 (8%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAY 59 EK ++W + ++P+ + R + + + +EM +++ G + + Sbjct: 201 EKKKINWKEKLYLSPLTTLGNLPFRRICKEFGAD-ITCSEMAMATSLLQGLKYEWALIKR 259 Query: 60 SEEEHPVALQLGGSDPAALAQCAKL-AEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E E +QL G++P + +CA+L E+ D I++N+GCP D V G+ L+ + Sbjct: 260 HESEDLFGIQLCGNNPFVMTKCAQLLEESTNVDYIDINLGCPIDLVYQKGGGSGLLRREK 319 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGI--DDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 ++ +K+M V+S+P+TVKTR G+ D ++ + F++ SG + +H R Sbjct: 320 VLESVIKSMSKVMSLPLTVKTRTGVYADKNVAHRLIPMFVD--SG---VSLITVHGRS-- 372 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ---HMDGVMVG 233 +E R D+ + + + + + NG + S E+ L+ ++ GVMVG Sbjct: 373 ------REQRYTRTADWNYINECGKAASPIPVFGNGDVLSFEDYNRALKENNNVSGVMVG 426 Query: 234 REAYQNPGILAAVDRE 249 R A P I + + Sbjct: 427 RGALYKPWIFKEIKEQ 442 >UniRef50_D2QXV2 Dihydrouridine synthase DuS n=4 Tax=Planctomycetaceae RepID=D2QXV2_9PLAN Length = 354 Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 25/230 (10%) Query: 30 LRLLSRN---TLLYTEMVTTGAIIHGKGD------YLAYSEEEHPVALQLGGSDPAALAQ 80 +R+++R + E++ ++ KGD +L ++E+HPVA QL G++PA AQ Sbjct: 29 MRVIARRHGASYALCEVMLDKFLVTLKGDRKKNRHFLYLTDEDHPVAGQLMGAEPAEFAQ 88 Query: 81 CA-KLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS--IPVTV 137 A +LAEA G+D I++N GCP +V G + + + V+ RD+V IPVTV Sbjct: 89 GALRLAEA-GFDVIDINFGCPVKKVLGRCRGGFHLSQPDVALEIVRRTRDIVPAHIPVTV 147 Query: 138 KTRIGIDD-QDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRV 196 K R G+DD Q S + + ++ G + +H R R + P + + Sbjct: 148 KMRRGLDDTQLSRDRFFEILDGAFAAGVAAI-TVHGRTV--------VQRYVGPSRWSFL 198 Query: 197 YQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILA 244 ++KR + +G + S ++ A ++ +DGV V R A NP I + Sbjct: 199 TEVKRHVGSRVILGSGDLFSAQDCLAMMRETGVDGVTVARGAIGNPWIFS 248 >UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea RepID=Q12U52_METBU Length = 318 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 27/251 (10%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRN---TLLYTEMVTTGAIIHGKGDYLA---YS 60 V G +AP+ + T+ RL+ + +L +TEM+++ A+++G Sbjct: 6 VDLPGNLLLAPLAEVTN----LAFRLMCKKYGASLCFTEMISSDAVVYGNASSAMRGITC 61 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQL 119 +EE P LQL G+ P + + A + E Y D I++N+GCP+ + N G+ L+ + +L Sbjct: 62 DEERPFGLQLFGNSPEVITEAALVLEDMFYPDMIDINLGCPAPVITNAGCGSALLESPEL 121 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 V+D + + V PVT K R+ +S D + + G C + +H R G Sbjct: 122 VSDIFSTLCEGVDTPVTAKIRV----LESRAATLDMAHRLEDAGVCAI-TVHGRTCE-QG 175 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAY 237 S + Y ++ + + P + +NG I+ A+ L++ DG+M+GR A Sbjct: 176 YSGTADHS-----YAKLIKEELSIPVI---VNGDIRDGVSAEKVLEYTGCDGLMIGRAAM 227 Query: 238 QNPGILAAVDR 248 +P + + R Sbjct: 228 GDPHVFHRISR 238 >UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bacteroidetes RepID=C7PIH0_CHIPD Length = 354 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 83/313 (26%), Positives = 139/313 (44%), Gaps = 46/313 (14%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG------KGDYLAYSEEEHPVAL 68 +APM D +D R + + L+YTE +++ +I K D Y E PV + Sbjct: 16 LAPMEDVSDPPFRAVCKEKGAD-LMYTEFISSEGLIRDAIKSRRKLDIFDY---ERPVGI 71 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ G D +A A++ EA D +++N GCP +V G+ ++ + + A+ Sbjct: 72 QIFGGDEEPMAMAAQIVEATNPDLLDINYGCPVKKVVCKGAGSGILKDIPKMVKLTAAVV 131 Query: 129 DVVSIPVTVKTRIGIDD-----QDSYEFLCDF---INTVSGKGECEMFIIHARKAWLSGL 180 +PVTVKTR+G DD ++ E L D T+ G+ +M+ HA W Sbjct: 132 KATKLPVTVKTRLGWDDDTKNIEEVAERLQDVGIQALTIHGRTRTQMYKGHAD--WTLIG 189 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQ 238 K N PR+ H+ + NG I + E+A A + +DGVM+GR A Sbjct: 190 KVKNN--------PRI--------HIPIFGNGDICTPEQAIAAREKYGVDGVMIGRAAIG 233 Query: 239 NPGILAAVDREIFGSSDTDADPVAV---VRAMYPYIERELS-QGTYLG--HITRHMLGLF 292 P I + F + P +V V +++ + +G +G + RH Sbjct: 234 YPWIFNEIKH--FMQTGEHLPPPSVLERVEVCKKHLQHSVQWKGDVVGILEMRRHYTNYL 291 Query: 293 QGIPGARQWRRYL 305 +G+P +++R+ L Sbjct: 292 KGLPHIKEFRQQL 304 >UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14 Tax=Bacteroidetes RepID=A5FL15_FLAJ1 Length = 332 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 79/309 (25%), Positives = 142/309 (45%), Gaps = 38/309 (12%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG------KGDYLAYSEEEHPVAL 68 +APM D +D R + + ++Y+E +++ +I K D Y E PV + Sbjct: 18 LAPMEDVSDPPFRRLCKTHGAD-MMYSEFISSEGLIRDAIKSRMKLDIFDY---ERPVGI 73 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ G D A+ +K+ D +++N GCP +V GA ++ + L+ KA+ Sbjct: 74 QIFGGDEEAMEMSSKIVSTVKPDLVDINFGCPVKKVVCRGAGAGVLKDVDLMVRLTKAVI 133 Query: 129 DVVSIPVTVKTRIGIDDQD-SYEFLCDFINTVSGKGECEMFIIHARK--AWLSGLSPKEN 185 +PVTVKTR+G D+ + + + + + + + IHAR G S Sbjct: 134 KGTDLPVTVKTRLGWDESSINIDEVAERLQDIG----VQALTIHARTRAQMYKGHS---- 185 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSI--NGGIKSLEEAKAHLQH--MDGVMVGREAYQNPG 241 D+ + ++K + P +TM I NG I S E+A + +DG+M+GR A P Sbjct: 186 ------DWSHIARVKNN-PRITMPIFGNGDIDSPEKALQYKNEYGIDGIMIGRAAIGYPW 238 Query: 242 ILAAVDREIFGSSDTDADPVAV--VRAMYPYIERELS-QGTYLG--HITRHMLGLFQGIP 296 I + + F + + P + V A +++ + +G LG + RH F+GI Sbjct: 239 IFNEI-KHYFKTGEHLPAPTVIDRVEAARNHLKWSMEWKGERLGIVEMRRHYTNYFKGIH 297 Query: 297 GARQWRRYL 305 +++++ L Sbjct: 298 SFKEFKQKL 306 >UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aquifex aeolicus RepID=DUS_AQUAE Length = 316 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 82/311 (26%), Positives = 140/311 (45%), Gaps = 38/311 (12%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVT-TGAIIHGKGDYLAY-SEEEHPVA 67 G +APM +T R R L + YTE+++ G + +G LAY +EEE P+ Sbjct: 5 KGEVILAPMASYTHSAFRRLCRRLGADRT-YTELISAVGVLRNGIPMKLAYFTEEERPIH 63 Query: 68 LQLGGSDPAALAQCA-KLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q+ GS+P +AQ + +A+ D I++N GC +V ++ L+ + VK Sbjct: 64 IQVFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPLMGEVVKE 123 Query: 127 MRDVVS---IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + + IPV+ K R+G ++D E + + + K + IHAR A G S K Sbjct: 124 TVEALKPYGIPVSAKIRLGF-EKDEVERIVEELQ----KAGVSLIAIHARTA-KQGFSGK 177 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPG 241 + R+ + K+ + + +G +KS + + + DGVMVGR A NP Sbjct: 178 AL-------WHRIKEAKK-VASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPW 229 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGT-YL------GHITRHMLGLFQG 294 IF D ++ +I ELS T Y+ I ++ + +G Sbjct: 230 --------IFKEFKEKRDIEVGLKERMDFILEELSMMTEYMSREKACAEIKSQIVQILKG 281 Query: 295 IPGARQWRRYL 305 +P +R+ + Y+ Sbjct: 282 VPNSRELKTYI 292 >UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB06_PLALI Length = 381 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 111/242 (45%), Gaps = 26/242 (10%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVAL 68 R+ +AP+ +T R R LR L L T++V ++ +A S + P+++ Sbjct: 50 RYGLAPLAGYTQRPFRVALRELGGMGLATTDLVHAVKLLSNNAFSQQLIATSLLDQPLSV 109 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLM----GNAQLVADCV 124 QL G+DP +A A+ E GY+ ++LN+GCP +V + GA LM G +LVA V Sbjct: 110 QLFGADPTHVATAARWLEDLGYEGVDLNMGCPMAKVNSQGGGARLMCDPTGATRLVALVV 169 Query: 125 KAMRDVVSIPVTVKTRIGIDDQD-SYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + VSIPVTVK R+G D Q S L V IH R G S K Sbjct: 170 AS----VSIPVTVKMRLGWDAQSLSAPLLARQFEEVGAAA----ITIHGRTR-AQGFSGK 220 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREAYQNPG 241 +RE + P + NG ++++E+A + + V +GR A +P Sbjct: 221 VSRE----GIAATVAAVQSIPVIG---NGDVRTVEDAISMRRETGCAAVAIGRGAMLDPW 273 Query: 242 IL 243 I Sbjct: 274 IF 275 >UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostridiales RepID=A9KHE5_CLOPH Length = 324 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 113/247 (45%), Gaps = 32/247 (12%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 +V+ +G + PM TD R + + L+YTEMV+ I + + L E+ Sbjct: 7 NVNINGNLVLGPMAGVTDLPFRLLCKEQGAD-LIYTEMVSAKGIYYNNKNTEVLLEVEEK 65 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 E PVALQL G DP +++ AK E R +D +++N+GCP +V N G+ LM + + + Sbjct: 66 ERPVALQLFGEDPYIMSEMAKRIEHRNFDFLDINMGCPVPKVVNNGEGSALMLKPERIGE 125 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEM-----FIIH--ARKA 175 V A+ + PVTVK R G F D IN V E +H R+ Sbjct: 126 IVSAISKAIKKPVTVKIRKG--------FTKDNINAVEVAKVIEQSGGAAIAVHGRTREQ 177 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVG 233 + SG + D+ + +K + + NG +++ E+ K + + D VM+ Sbjct: 178 YYSGEA----------DWDIIKAVKEAV-SIPVIGNGDVQTPEDVKRMMSYTGCDAVMIA 226 Query: 234 REAYQNP 240 R NP Sbjct: 227 RGVRGNP 233 >UniRef50_Q5HJT5 Probable tRNA-dihydrouridine synthase n=92 Tax=Firmicutes RepID=DUS_STAAC Length = 328 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 81/309 (26%), Positives = 138/309 (44%), Gaps = 38/309 (12%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY-----LAYSEEEHPVA 67 F +APM D TD R+ + +R + +TE T + H +G + L +SE+E P+ Sbjct: 14 FILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVRGRLTFSEDEQPMV 73 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 + G P + + G+ I+LN+GCP V G+ L+ + A+ ++A Sbjct: 74 AHIWGDKPEQFRETSIQLAKMGFKGIDLNMGCPVANVAKKGKGSGLILRPDVAAEIIQAT 133 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + +PV+VKTR+G + D ++ D++ V + + IH R +E Sbjct: 134 K-AGGLPVSVKTRLGYYEIDEWK---DWLKHVFEQ-DIANLSIHLRT----------RKE 178 Query: 188 IPPLD--YPRVYQLK--RD--FPHLTMSINGGI----KSLEEAKAHLQHMDGVMVGREAY 237 + +D + + +K RD P+ ++ING I LE A+ + +DGVM+GR + Sbjct: 179 MSKVDAHWELIEAIKNLRDEIAPNTLLTINGDIPDRKTGLELAEKY--GIDGVMIGRGIF 236 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF-QGIP 296 NP RE S + + Y + E+ Q L R ++ +GI Sbjct: 237 HNPFAFEKEPRE-HTSKELLDLLRLHLSLFNKYEKDEIRQFKSL----RRFFKIYVRGIR 291 Query: 297 GARQWRRYL 305 GA + R L Sbjct: 292 GASELRHQL 300 >UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3Q8_9BACT Length = 341 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 74/313 (23%), Positives = 136/313 (43%), Gaps = 28/313 (8%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAII-HGKGDY--LAYSEEEHPVA 67 G +APM ++D R R ++ YTE+V+ I+ + K + L + EEE PV Sbjct: 33 GELILAPMAGFSDMPYRLICRRFGM-SMSYTEVVSVSGIVWNNKKTFKLLDFKEEERPVT 91 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 Q+ G+D + + K E G D I++N+GC + GA ++ + ++ + Sbjct: 92 FQVVGNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGKGAGAGMLKHPSKISKMFNNL 151 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIH--ARKAWLSGLSPKEN 185 +S+PVT K R+G D + I +G + +H R + SG + Sbjct: 152 TGSLSVPVTGKIRLGWDHKTRNYIEVARILEENG---ASLIAVHGRTRSQYFSGAA---- 204 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGIL 243 D+ + ++K+ + + NG ++S+ + + DGVM+GR A +P I Sbjct: 205 ------DWDAIAEVKQSV-KIPVIANGDVRSVADIAEIKKRTACDGVMIGRAAIGHPWIF 257 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 DRE S+ + ++R ++ + +H + G+P A + R Sbjct: 258 RYKDRENISGSEK----IEMIRYHLDCMKEYYGHAIGVVLFRKHAVKYIVGLPKATELRP 313 Query: 304 YLSENAHKAGADI 316 Y+ + K+ DI Sbjct: 314 YIVRS--KSAEDI 324 >UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ00_9FIRM Length = 336 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 82/325 (25%), Positives = 146/325 (44%), Gaps = 34/325 (10%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 D+ F +AP+ +TD R + L L+Y+EMV+ +I+ + + L + Sbjct: 10 DIELPSPFLMAPLAGFTDNAVRT-IALEFGAGLVYSEMVSAKGLIYEQKNTEELLDFRGA 68 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 + +A+Q+ GSDP A+A + E +G +++N+GCP ++ GA LM ++ D Sbjct: 69 DGFIAIQIFGSDPDAVAHGIQCIENKGNAIVDINMGCPMQKIVKSGSGAALMKRPDIIYD 128 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS--GL 180 VK + PVT K RIG D+ + IN V +C I A + ++ G Sbjct: 129 MVKDAVKITQKPVTAKIRIGWDNNN--------INAV----DCAKAIESAGASAVAVHGR 176 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQ 238 + K+ E ++ + +K+ + NG IKS +EA + D VM+GR A Sbjct: 177 TAKQKYE-GSVNRDVIASVKQSVSIPVIG-NGDIKSAKEALEFMDETGCDMVMIGRGAIG 234 Query: 239 NPGILAAVDREIF----GSS---DTDADPVA--VVRAMYPYIERELS---QGTYLGHITR 286 P I + + + G S T+ +P A ++ + I+ +S + L + + Sbjct: 235 KPWIFKSCNMALSEIRKGKSIDEITEYEPCADEILNTLKKLIDLTVSYKGEKRALLELRK 294 Query: 287 HMLGLFQGIPGARQWRRYLSENAHK 311 + + G + +R+ L E K Sbjct: 295 KLSKYLKNTSGVKDYRKRLYEAGTK 319 >UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZV7_UNCTG Length = 320 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 26/257 (10%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNT---LLYTEMVTTGAIIHG---KGDYLAY 59 ++ + +APM TD LR L+++ L+YT M++ A++ L Sbjct: 8 NIEFDNNIILAPMAGITDLP----LRRLAKSGGAGLVYTGMLSARALVRSDEKTEKLLKT 63 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 +E+E PVA Q+ GS +A+ AK+ G D I++N+GCP +V GA L+ + +L Sbjct: 64 TEDERPVAAQIFGSAAHIMAEAAKIVRNSGADIIDVNLGCPVKKVAKAGAGAKLLADEKL 123 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 V++ ++++ V +PVTVK R G+ + + + I G +M +HAR A Sbjct: 124 VSEILESVVKSVDVPVTVKIRTGLLPE--HNAATEIIKVAYNCG-IKMVAVHARPA---- 176 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAY 237 + + P L +++ + + NGG+ + A L+ + G+M+GR A Sbjct: 177 --SQGHSGFPDL---KLFAASCAGAKIPVIANGGVVDEKTAADFLRVPNCAGIMIGRGAL 231 Query: 238 QNPGILAAVDREIFGSS 254 N I + E F SS Sbjct: 232 GNYSIFKRL--EAFFSS 246 >UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SC53_LEPBA Length = 316 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 32/266 (12%) Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 ++ + PV +Q+ GSDP +A A L + G I++N GCP+ V GA L+ L Sbjct: 59 TKSDTPVKIQILGSDPNRMADNAHLVASLGAYGIDINFGCPAPTVNRNRGGAALLKEPNL 118 Query: 120 VADCVKAMRDVV--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 + VKA+R+VV +IPVT K R+G +S E D + G E+ ++HAR Sbjct: 119 MYSIVKAVRNVVPENIPVTAKMRLG---YESTELALDCAKALEEGGAKEI-VVHART--- 171 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAK--AHLQHMDGVMVGRE 235 K + PP + + ++K + + NG I ++++A + D +M+GR Sbjct: 172 -----KTDGYKPPAYWEWIAKIK-SILKINVIANGEIWTVQDAIQCQKISGCDDIMIGRG 225 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 A NP I + +++ V+ + + +E ++ + +G I Sbjct: 226 AVTNPSIALLIKKKLEERMSWQKTK-EVLSSYWLSMEPDVEAVSRVGRI----------- 273 Query: 296 PGARQWRRYLSENAHKAGADINVLEH 321 +QW YLS +A D ++ Sbjct: 274 ---KQWLHYLSREYEEAQIDFQKIKR 296 >UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococcaceae RepID=C7H613_9FIRM Length = 340 Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 22/254 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYT--EMVTTGAIIHGKGDYLAYSEEE 63 ++ R PM +TD R RL++++ +T EMV++ A+++G ++ + E Sbjct: 44 EISLPHRAVFGPMAGFTDAPAR---RLMAQHGAGFTVSEMVSSRALVYGDHKTVSLLKAE 100 Query: 64 ---HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 P +Q+ G P + Q A E +D +++N+GCP+ ++ +G G+ LM + Sbjct: 101 PNGAPYGVQIFGEVPEIMGQAAAAVEQYAFDFLDINMGCPAPKIVSGGAGSKLMLDPDRC 160 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 V+ + S PVTVK R G D + C +G + +HAR Sbjct: 161 GRIVEEVVKNTSRPVTVKMRKGWDAEHVTAVECAKACEQAGA---VLIAVHART------ 211 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQ 238 +E P +D P + +D H+ + NG I++ E+A ++ DGVM+ R A Sbjct: 212 --REQMYTPGID-PSIIAAVKDAVHVPVLGNGDIRTAEDAVRMVEETGCDGVMIARAALG 268 Query: 239 NPGILAAVDREIFG 252 +P + V+ + G Sbjct: 269 DPWLFERVNAALEG 282 >UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira RepID=B0S913_LEPBA Length = 337 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 63/253 (24%), Positives = 120/253 (47%), Gaps = 22/253 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEE 62 +V G +++PM +D R + + YTE V+T + G D + E Sbjct: 6 NVIIEGDVALSPMAGISDSPYRQITKRFG-SAFSYTEFVSTEQLKLGNAKSLDMFRFVEM 64 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 E P+ Q+ GSD + +++A + D I+LN+GC +V + GA L+ N +L Sbjct: 65 ERPIVFQIFGSDLDTVVNASEIAAEQKPDIIDLNMGCSVSKVSHNGSGAGLLKNIRLAGK 124 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL--SGL 180 ++ +R+ ++PVT K R+G D +S +L + + + G +H R + +G+ Sbjct: 125 MIEGIRNRTNLPVTAKIRLGW-DANSLNYL-ETLKVLEDSG-VSAISVHGRTKAMAYTGI 181 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA--KAHLQHMDGVMVGREAYQ 238 + D+ + ++K ++ + NG ++S +EA K +D V++GR+A Sbjct: 182 A----------DWNAIGEIKSR-ANVPIYGNGDVQSYKEALEKKKTYGVDLVLIGRKAIG 230 Query: 239 NPGILAAVDREIF 251 NP + ++ F Sbjct: 231 NPWVFGKTPKQFF 243 >UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1LWM8_METRJ Length = 341 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 84/312 (26%), Positives = 130/312 (41%), Gaps = 47/312 (15%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE----EEHPVALQL 70 +AP+ TD H R R + ++ +EMV G G+ +E + H V QL Sbjct: 28 LAPLSGVTDLHMRRIARRCGADAVI-SEMVAAREFTRGSGEATLRAEGSGVDLHVV--QL 84 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G + +A+ A+LAEA G D I++N+GCP+ V G+ LM + + ++R Sbjct: 85 AGCEAGPMAEAARLAEAGGADVIDVNMGCPAKIVTGIASGSALMRDLDHAERLLASVRGA 144 Query: 131 VSIPVTVKTRIGIDD--QDSYEFLCDF----INTVSGKGECEMFIIHARKAWLSGLSPKE 184 VSIPVTVK R+G DD +++ + +N V+ G R W + + Sbjct: 145 VSIPVTVKMRLGWDDASRNAADLAARAERLGLNAVTVHGRTRQQFYKGRADWAAIRAVVA 204 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGI 242 IP + NG + A+A L GVM+GR A P + Sbjct: 205 AVSIPVI------------------ANGDVTDFASARACLDASGAAGVMIGRAATGRPWL 246 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 + V + G A+P +A L+ Y G +L L+ G R R Sbjct: 247 VGQVAAALTGRP--AAEPSRSEQA-------ALAAEHYAG-----LLSLYGRDMGVRHAR 292 Query: 303 RYLSENAHKAGA 314 ++L+ A GA Sbjct: 293 KHLAAYAETGGA 304 >UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verrucomicrobia RepID=B1ZWU6_OPITP Length = 370 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 16/239 (6%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEEEHPV 66 S ++P+ +T+ R LR L + T++V +++ L A S E+ P+ Sbjct: 9 SSNLFLSPLAGYTNLPFRLTLRELGGLGWVTTDLVNARSLLERNPAALKLVASSAEDRPM 68 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 ++QL GS P + A++ E G +++N+GCP +V G+ +M A V+ Sbjct: 69 SIQLFGSVPTEMRDAARICEDLGAQAVDINMGCPVRKVVRVGGGSAMMTELNQTAALVRG 128 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 M + V IPVT K R+G DD++ D + G +F +H R G S N Sbjct: 129 MIEAVKIPVTAKMRLGWDDENLTA--PDLARVLEDAGVAAVF-VHGRTR-AQGFSGTVNL 184 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREAYQNPGIL 243 V Q + P + NG + + E A+A ++ GV +GR A+ +P I Sbjct: 185 A----GIAAVVQAVKRIPVIG---NGDVTTPEAARAMIEQTGCAGVSIGRGAFYDPWIF 236 >UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH09_DESAA Length = 328 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 107/247 (43%), Gaps = 30/247 (12%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEEE--H 64 + R +APM T R + L LLYT M ++ H ++ E+E H Sbjct: 9 ANRLILAPMAGLTHIAFREVMALYGGYGLLYTGMAGAKSVPHENPKVSTVFSWREKELDH 68 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 V Q+ GS P +A+ A+ EA G+ +++N GC + + GA L+ L A V Sbjct: 69 TVC-QIFGSVPETMAKAAERIEAEGFFGVDINCGCSARAICRFDSGAALLAKPDLAAQVV 127 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSY-----EFLCDFINTVSGKGECEMFIIHARKAWLSG 179 +A+R V+IPV VK R G D ++ CD + I H R Sbjct: 128 RAVRKAVNIPVIVKFRTGWKDDPAHAVSMARLFCD--------EGADALIFHPR------ 173 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAY 237 ++P P +Y L +D + + NG + SL++A L DGV +GR A Sbjct: 174 VAPDLRTRPPKWEY---IGLVKDAVKVPVFGNGNVISLDDAAKMLSMSGCDGVALGRIAL 230 Query: 238 QNPGILA 244 P I+A Sbjct: 231 AQPWIMA 237 >UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteriaceae RepID=D1AWB1_STRM9 Length = 305 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 72/308 (23%), Positives = 146/308 (47%), Gaps = 31/308 (10%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 71 + APM TD R + + +TEMV+ +++ + + E + V Q+ Sbjct: 4 KIYTAPMAGVTDYTFRKIIEDFKPD-FTFTEMVSVDKLLYKEVPKILKLRENNIV--QIF 60 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G D + + AK E+ G EINLN GCP ++ N G+ L+ + + + + + A+R+V+ Sbjct: 61 GKDIYLMQKAAKYIESMGVKEINLNCGCPMKKIVNSGHGSALIKDPRKIEEILTALREVL 120 Query: 132 --SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 +++K R+G D ++Y + ++ K +C IIH R +E + Sbjct: 121 DPKTALSLKIRVGYDKPENYLEIA----KIAEKLKCSNIIIHGR--------TREQKYSG 168 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEA--KAHLQHMDGVMVGREAYQNPGILAAVD 247 D+ + ++K D ++ + NG I + A K ++DG+M+ R NP +++ + Sbjct: 169 EADWKYIKEVK-DNVNIKVIGNGDIFDAKNAIEKIRETNVDGIMLARGILGNPWLISQI- 226 Query: 248 REI--FGSSDT---DADPVAV-VRAMYPY-IERELSQGTYLGHITRHMLGLFQGIPGARQ 300 +E+ FG T D D + + +R + Y I+ E + I ++++ + I G + Sbjct: 227 KELFEFGEIKTIVRDIDRINMAIRHVKEYAIDNE---NVFFPDIRKYIIWYIENIKGIDE 283 Query: 301 WRRYLSEN 308 + ++++ Sbjct: 284 TKNLINQS 291 >UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W908_9FIRM Length = 321 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 116/282 (41%), Gaps = 40/282 (14%) Query: 40 YTEMVTTGAIIHGK---GDYLAYSEEEHPVALQLGGSDPAALAQCAK--LAEARGYDEIN 94 +TEMV+ A+ + D L SE E +QL GS P + + K + EI+ Sbjct: 36 FTEMVSVNALYYDNKKTNDLLFISENEKNCNIQLFGSKPEVIEKVIKDKINYIEKSKEIS 95 Query: 95 LNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCD 154 N+GCP ++ G+ LM N +LV + K +R + +K R+GIDD+ +L Sbjct: 96 FNMGCPVAKITKNGEGSQLMANPKLVEEICKTLRKSTDKKLNIKFRLGIDDK-HINYLD- 153 Query: 155 FINTVSGKGECEMFIIHARKA---------WLSGLSPKENREIPPLDYPRVYQLKRDFPH 205 I ++ + I+HAR W KEN +IP + Sbjct: 154 -IGKIAQDTGIDYVILHARTKDQMYSGNANWDHIRKLKENLQIPVI-------------- 198 Query: 206 LTMSINGGIKSLEE--AKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAV 263 NG I S+E+ L DGVM+ R A NP + + I + P+ + Sbjct: 199 ----ANGDIFSVEDFINVIDLTKADGVMLARGAMGNPFLFKEIKDYIKTGKYSKPSPIEI 254 Query: 264 VRAMYPYIERELS---QGTYLGHITRHMLGLFQGIPGARQWR 302 + + + EL + + + +H+ +G+ + + R Sbjct: 255 IDQLIDQYKLELKYKEEKLVVTQMRKHLSWYIKGLENSSKIR 296 >UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDL9_PLALI Length = 385 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 107/239 (44%), Gaps = 20/239 (8%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEEEHPVAL 68 R ++P+ +T+ R + L L T++V ++ G L A + P A+ Sbjct: 49 RTLLSPLAGFTNLPFRRVVHELGGLGLGTTDLVNARGLLAGSEKTLRLIATHPIDRPFAV 108 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ G + + + A+L EARG D I++N+GCP +V GA LM +A + VKA+ Sbjct: 109 QIFGGEASIMRDAAQLLEARGVDSIDINMGCPVLKVVKTGAGASLMCHADAATELVKAVV 168 Query: 129 DVVSIPVTVKTRIGIDDQD--SYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + V +PVTVK R+G D + F +F IH R G S NR Sbjct: 169 EAVHVPVTVKMRLGWDASQLTAPRFAREFEQV-----GVAAVAIHGRTR-AQGFSGTVNR 222 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGIL 243 + + Q+ + + NG I+S+++A A + +GR A NP I Sbjct: 223 D-------GIRQVVEAVDSIPVIANGDIRSVDDAIAMYDETGCQAISIGRGALANPWIF 274 >UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 Tax=Ciona intestinalis RepID=UPI00006A5AE6 Length = 474 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 33/241 (13%) Query: 15 VAPMLDWTDRHCRYFLRLLSRN---TLLYTEMVTTGAIIHG---KGDYLAYSEEEHPVAL 68 VAPM+D ++ R+LSR L YT M+ + + D LA E+ P+ + Sbjct: 23 VAPMVDQSE----LAWRMLSRKYGAELCYTPMLHASVFLRDPQYRIDGLASCPEDRPLIV 78 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q +DP L + A LA+ D +++N+GCP + G +GA L N +LV +KA Sbjct: 79 QFCANDPDILTKSALLAQDHC-DAVDINLGCPQTIAKRGNYGAFLGENWELVTKLIKACH 137 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR----KAWLSGLSPKE 184 + +S+PVT K RI D + + ++ + + C++ +H R K ++GL+ E Sbjct: 138 EKLSVPVTCKIRIFTDVEKTVQYA-----KMIERAGCQLLTVHGRTKEMKGPMTGLASWE 192 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGI 242 + + +D + + NG I+ + + +DGVM+ +P + Sbjct: 193 H-----------IKAVKDAVKIPVFANGNIQYKADVDRCINQTGVDGVMIAEGNLHDPCL 241 Query: 243 L 243 Sbjct: 242 F 242 >UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C2KYD0_9FIRM Length = 344 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 85/322 (26%), Positives = 136/322 (42%), Gaps = 42/322 (13%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 D G +APM TD R + + +L +TEMV+ AI +G + L + E Sbjct: 34 DCELPGNILMAPMAGVTDLPYRILCKEMGL-SLSFTEMVSAKAIYYGNQNTDSLLVHKGE 92 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 V+ QL GSDPA +A+ A E +D I++N+GCP +V G+ LM N L Sbjct: 93 PGLVSAQLFGSDPALMAEMACRIE-EDFDGIDVNMGCPVPKVVRNQEGSALMTNLPLAEQ 151 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQ--DSYEFL----CDFINTVSGKGECEMFIIHARKAW 176 + M + P+TVK RIG D + EF + +V+ G + W Sbjct: 152 VLSTMAKALKKPLTVKFRIGFTDDAINVVEFAKMAEASGVASVTIHGRTREQYYRGKANW 211 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREA 236 KE +IP ++Q + L M ++ G+ DGV + R Sbjct: 212 QYIKEAKEAVKIPVFGNGDIFQ---EEDALAMLLSTGV-------------DGVALARGI 255 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAV-------VRAMYPYIERELSQGTYLG--HITRH 287 NP ++ A + S PV++ +R + +E +G +L + +H Sbjct: 256 QGNPFLIRACVSLL--SEGKKLPPVSLSERKEMMLRHLKLMVE---IKGEHLALLEMRKH 310 Query: 288 MLGLFQGIPGARQWR-RYLSEN 308 + +G+ A +WR R +EN Sbjct: 311 LSWYMEGLENAARWRQRVNTEN 332 >UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia RepID=D0WEP2_9ACTN Length = 318 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 81/281 (28%), Positives = 124/281 (44%), Gaps = 26/281 (9%) Query: 38 LLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDE-- 92 L YTEM+++ A+ L +E E VA+QL G +P +A+ A E D Sbjct: 20 LTYTEMISSKALSFANEKTRHLLDLAEGERRVAIQLFGHEPKVMAREAAWVEDELGDALA 79 Query: 93 -INLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEF 151 I++N+GCP+ ++ G+ LM + L A V+ + VS PVTVK R G ++ E Sbjct: 80 LIDINMGCPAHKIVKKGDGSALMRDQDLAASIVRDVARAVSCPVTVKFRRGFGAEE--ET 137 Query: 152 LCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSIN 211 DF + G + +H R A P E + V ++K + N Sbjct: 138 AVDFGLRMEDAGAAAV-TVHGRTAAQMYRGPSE--------WECVARVKAALSVPVIG-N 187 Query: 212 GGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAVDREIFG----SSDTDADPVAVVR 265 G I S A ++ DGVM+ R A NP I A V R + G T D V + R Sbjct: 188 GDIVSGASAADMVRATGCDGVMIARGAQGNPWIFADVRRVLDGMPPAPDPTRQDRVEMAR 247 Query: 266 AMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLS 306 + L G + ++ +H++ G+PGA + R L+ Sbjct: 248 RHIHLLSSRL--GNTVVYMRKHVMWYLHGVPGASRARAALN 286 >UniRef50_O31546 Probable tRNA-dihydrouridine synthase 2 n=107 Tax=Bacteria RepID=DUS2_BACSU Length = 325 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 111/238 (46%), Gaps = 22/238 (9%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-----YLAYSEEEHPVA 67 F +APM D TD R+ + R + +TE + + H G L ++E+E P+ Sbjct: 14 FVLAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSESYCHPDGKDSVRGRLTFTEDEQPIV 73 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 + G P + + G+ +++N+GCP V G+ L+ + A+ ++A Sbjct: 74 AHIWGDKPENFRKMSIGMAELGFKGLDINMGCPVPNVAGNGKGSGLICRPAVAAELIQAA 133 Query: 128 RDVVSIPVTVKTRIGIDDQDSY-EFLCDFINTVSGKGECEMFIIHAR-KAWLSGLSPKEN 185 + +PV+VKTR+G D D + E+L + K + IH R +A +S + + Sbjct: 134 K-AGGLPVSVKTRLGYTDVDEWREWLTHIL-----KQDIANLSIHLRTRAEMSKVD--AH 185 Query: 186 REIPPLDYPRVYQLKRDF-PHLTMSINGGIKSLEEA--KAHLQHMDGVMVGREAYQNP 240 E+ P + +L+ + P ++ING I + A +DG+M+GR + NP Sbjct: 186 WEL----IPEIKKLRDEVAPDTLLTINGDIPDRQTGLKLAEQYGVDGIMIGRGIFTNP 239 >UniRef50_A6W1E8 Dihydrouridine synthase DuS n=1 Tax=Marinomonas sp. MWYL1 RepID=A6W1E8_MARMS Length = 335 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 25/227 (11%) Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 A + HPV QL GS+ +A+ A A G I++N GCP+ RV G+ L+ Sbjct: 75 ARTTHNHPVHTQLLGSNAELMAESALNATKAGAKHIDVNFGCPAKRVNGHGGGSVLLQTP 134 Query: 118 QLVADCVKAMRDVV--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 + D + A+RD + IPV+ K R+G +D+ L D + + G IH R Sbjct: 135 DALYDIMSAIRDTLPSDIPVSAKIRLGFEDE---ALLFDNVAAIEAAG-VGTLTIHGRT- 189 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI---KSLEEAKA--HLQHMDGV 230 K++ PP + ++ +++ +T+ NG I KSL ++ QH Sbjct: 190 -------KKDGYKPPARWEKIGEIQAK-TKMTVVANGDITDTKSLLRCQSITGCQHF--- 238 Query: 231 MVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQ 277 M+GR + NP + + +E+ G T AD + R Y REL + Sbjct: 239 MIGRGSLNNPFVFQQIRKELNGQEST-ADTTNLNRLFISY-SRELQE 283 >UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Streptococcus RepID=Q5M689_STRT2 Length = 350 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 108/243 (44%), Gaps = 21/243 (8%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVAL 68 R +APM T+ R + S L+ EM++ +++ L E EHP+++ Sbjct: 43 RTVLAPMAGVTNSAFRTIAKEFSAG-LVVMEMISEKGLLYNNEKTLHMLHIDENEHPMSI 101 Query: 69 QLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 QL G D L + A + D +++N+GCP ++V GA + + + VK + Sbjct: 102 QLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLKDPDKIYHIVKEV 161 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGE-CEMFIIHARKAWLSGLSPKENR 186 V+ IP+TVK R G D D N ++ + +H R +E Sbjct: 162 TSVLDIPLTVKMRTGWSDSD-----LAVENALAAESAGVSALAMHGR--------TREQM 208 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILA 244 D+ + ++ + + NG ++++++AK ++ + D VMVGR A NP I Sbjct: 209 YTGHCDHETLARVAKAITKIPFIGNGDVRNVQDAKLMIEELGVDAVMVGRAAMNNPYIFT 268 Query: 245 AVD 247 ++ Sbjct: 269 QIN 271 >UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3T5_NATTJ Length = 327 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 130/296 (43%), Gaps = 28/296 (9%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVALQLG 71 VAPM TD R L S L+ EMV+ +++G + + + + + Q+ Sbjct: 17 VAPMAGVTDYPYRRILAKFSPG-LICGEMVSAKGMVYGNKKTEEMVIHHNQGVHYSQQIF 75 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 GSDP +A A E G D I++N+GCP+ ++ G+ L+ L + V+ + + V Sbjct: 76 GSDPKVMADAAVKLENLGVDSIDVNMGCPAPKIVKNGEGSALLKKPHLAQEIVREIVNSV 135 Query: 132 SIPVTVKTRIGIDDQDSYEF-LCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 ++PVTVK R G D + S L + V K +H R E + Sbjct: 136 NLPVTVKIRKGFDRKSSDPLELALRLQEVGIKA----LAVHGRTC--------EQQYSGK 183 Query: 191 LDYPRVYQLKR--DFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAV 246 D+ V +LK D P + NG I S E+A + L+ DG+M+GR NP ++ Sbjct: 184 ADWEVVAKLKNYLDIPVIG---NGDIFSSEDAVSALEMTACDGIMLGRGLMGNPWLIEQT 240 Query: 247 DREIFGSSDTDADPVAVVR-AMYPYIERELS---QGTYLGHITRHMLGLFQGIPGA 298 + ++ + ++ M + E + + + + +H+ + +PG+ Sbjct: 241 KGMLIKDEKIESPEIHEIKNEMKSHFENAIKYYGESKGIAEMRKHISWYLKSLPGS 296 >UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AKJ6_DESPS Length = 354 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 112/245 (45%), Gaps = 17/245 (6%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEEHPVALQ 69 S+APM+ + R + L L YTEM+ + H YL + E P+ Q Sbjct: 44 LSLAPMVGLSHSALRSLIADLGGCGLFYTEMLAARRLPHENPAVSSYLHTTPCERPLIYQ 103 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 L +D +A G D +++N+GCP+ V+ G GA L + V D V + R Sbjct: 104 LFIADVKYVAPALDKIHRLGGDGVDINLGCPAPSVRRGGAGAALAEDWDRVRDIVSSARR 163 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 + ++ K R+G ++++ L DF + +G ++ +HAR + + Sbjct: 164 HTDLTLSAKIRVGHVGKEAH--LLDFCKMLEAEG-VDLLAVHARYHGEKFCRKPRWQLLA 220 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAK--AHLQHMDGVMVGREAYQNPGILAAVD 247 P+ QL D P + NGGI S+++A+ L G+M+GR A + P + + Sbjct: 221 PI----CEQL--DIP---IFANGGIFSVDDARRCLELSGAAGLMLGRGAVERPWLFNEIA 271 Query: 248 REIFG 252 RE++G Sbjct: 272 REVYG 276 >UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DU09_9BACT Length = 334 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 80/322 (24%), Positives = 142/322 (44%), Gaps = 41/322 (12%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNT---LLYTEMVTTGAIIHGKGD------ 55 TD+ G ++APM D TD R L ++ ++++E ++T + H G Sbjct: 6 TDIKSPG-IALAPMEDVTDTVFRQILLETAQPKNLQVVFSEFISTDGLCHPIGHDKVIHR 64 Query: 56 YLAYSEEEH-------PVALQLGGSDPAALAQC-AKLAEARGYDEINLNVGCPSDRVQNG 107 +L EE + Q+ G +P ++ +K + +D +++N+GCP ++ Sbjct: 65 FLISDEERKLLKEKNIKIVAQVWGKNPDKFSEAISKYVDPEVFDGVDINMGCPVAKIVKQ 124 Query: 108 MFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEM 167 + L+ ++ + V A + +PV+VKTR GI + E++ + E Sbjct: 125 GGCSALINTPEIAKELVLAAKAATKLPVSVKTRTGITAHKTEEWMTHLLEV-----EPAA 179 Query: 168 FIIHAR--KAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ 225 I+H R K GL+ + EI R R PH+ NG ++S+E+A Q Sbjct: 180 IILHGRTQKQQSEGLASWD--EIAKGARVR----DRLKPHIPFWGNGDVRSIEQAHQLCQ 233 Query: 226 H--MDGVMVGREAYQNPGILAAVDREIFGSSDTDA-DPVAVV-RAMYPYIERELSQGTYL 281 +DG M+GR + NP I + ++ G + + +A++ R Y SQ +L Sbjct: 234 EHKLDGAMIGRGVFHNPWIF---NTDLLGDNVLPPEEKIALLWRHASLYTSFWGSQKNFL 290 Query: 282 GHITRHMLGLF-QGIPGARQWR 302 R ++ QG PGA +R Sbjct: 291 --TLRRFFKIYAQGFPGANAFR 310 >UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseriaceae RepID=DUSC_NEIMA Length = 333 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 28/289 (9%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE 62 + T+ R +APM D R L + +E V +H + +L Y E Sbjct: 5 QTTEPKQKTRIILAPMQGLVDDVMRDLLTRIGGYDECVSEFVRITHTVHSRATWLKYVPE 64 Query: 63 ---------EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACL 113 P +QL GSD +A A A G D+I+LN GCP+ V GA L Sbjct: 65 IANGNKTFSGTPCTVQLLGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGAIL 124 Query: 114 MGNAQLVADCVKAMRDVVS--IPVTVKTRIGIDDQD-SYEFLCDFINTVSGKGECEMFII 170 + +L+ VK +R+ + IP+T K R+G +D+ + E C ++ G C + + Sbjct: 125 LKEPELIFHIVKTLRERLPAHIPLTAKMRLGYEDKSPALECAC----AIAEGGACGL-TV 179 Query: 171 HARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEE--AKAHLQHMD 228 HAR + E E PP + + ++ RD + ++ NG + SL++ + + Sbjct: 180 HAR-------TKAEGYE-PPAHWEWIRKI-RDSVDIPVTANGDVFSLQDYIGIKTISGCN 230 Query: 229 GVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQ 277 VM+GR A P + + + G D D V + + + E L++ Sbjct: 231 SVMLGRGAVIRPDLARQIKQYENGGPVKDTDFAEVSKWIRQFFELCLTK 279 >UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine synthase n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792282 Length = 578 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 19/247 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS---EEE 63 ++W + +AP+ + R + + + +EMV + +++ G A + E E Sbjct: 227 INWKNKLYLAPLTTVGNLPFRRICKEFGAD-ITCSEMVLSSSLLQGHNQEWALTKRHETE 285 Query: 64 HPVALQLGGSDPAALAQCAK-LAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 +Q+ G++P LA+ A+ L E D ++LN+GCP D++ G+ L+ ++ + Sbjct: 286 DIFGIQVCGNNPYMLAKSAQVLQENVDMDFLDLNLGCPLDQIYKQGAGSGLLLRSKKLEV 345 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 C+K+MR V+ +P+TVKTR G++ + D I G + +H R Sbjct: 346 CLKSMRTVLDVPLTVKTRSGVNKDQNVAH--DLIPMFKDSG-VSLITVHGRS-------- 394 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLE---EAKAHLQHMDGVMVGREAYQN 239 ++ R D+ V + + + + +G I S E ++K + G M+GR A Sbjct: 395 RDQRYTKMADWNYVNECAKLASPVQVFSSGDIMSYEDYVDSKLQFPDITGAMIGRGALIK 454 Query: 240 PGILAAV 246 P I + Sbjct: 455 PWIFKEL 461 >UniRef50_B0EC90 tRNA-dihydrouridine synthase, putative n=2 Tax=Entamoeba RepID=B0EC90_ENTDI Length = 340 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 79/295 (26%), Positives = 134/295 (45%), Gaps = 53/295 (17%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE--------EHPV 66 +APM+D +D R +R N L YT MV + + K Y E E P+ Sbjct: 27 LAPMVDGSDLTFRILVRRHGVN-LCYTPMVLSKMFVESK----VYRNEVVNSLDPKERPI 81 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q+ GSD +A+ AK ++ D I++N+GCP Q G +GA L + + V A Sbjct: 82 IIQVVGSDANEMARTAKFLQSYC-DAIDINLGCPQKIAQKGNYGAYLALDFDHTKEIVNA 140 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFL-----CDFIN-TVSGK--GECEMFIIHARKAWLS 178 + + V+IPV K R+ D+ + +F+ C V G+ E + HAR +++ Sbjct: 141 VIEAVNIPVYCKVRVFEDEDKTMKFVEMLQECGIWGIAVHGRTINEKQSMNYHARWNYIA 200 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKS---LEEAKAHLQHMDGVMVGRE 235 + KE +IP + NG ++S +EE K + H DG M+G Sbjct: 201 KI--KEQLKIPVI------------------ANGEMRSREKIEECKK-VTHSDGYMIGFG 239 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYL-GHITRHML 289 NPG+ I +++ A+ + ++ Y ++ L + + + GH+ + ML Sbjct: 240 LLMNPGMCEG----IIDNNEQIAEE--YINIVFEYKDKNLVRLSDVKGHLIKMML 288 >UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicutes RepID=Q6F288_MESFL Length = 325 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 76/305 (24%), Positives = 131/305 (42%), Gaps = 44/305 (14%) Query: 30 LRLLSRNT---LLYTEMVTTGAIIHGKG---DYLAYSEEEHPVALQLGGSDPAALAQCAK 83 RL+S+ L+ EMV+ + H LA ++EHP+++Q+ G+D + K Sbjct: 25 FRLISKEKGADLVCAEMVSVEGMTHNNKKTFSMLAVEKKEHPMSMQIFGNDVESFIVATK 84 Query: 84 -LAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRI 141 + E D I+LN+GCP+ +V G+ L+ +L+ D VKA+ + S PVT K R+ Sbjct: 85 WIDENVDCDIIDLNIGCPAPKVAVRSASGSSLLKTPELIYDIVKAVVENTSKPVTAKIRL 144 Query: 142 GIDDQDSYEF-LCDFIN-------TVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 193 G D + + I TV G+ E + HA D+ Sbjct: 145 GWDKESVNAVEVSKLIEKAGASGITVHGRTRSEFYSGHA-------------------DW 185 Query: 194 PRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAVDREIF 251 ++ ++K ++ + NG + AKA L+ DGVM+ R NP I + + Sbjct: 186 EKIKEVKEAV-NIPVIGNGDVIDGPSAKAMLELTGCDGVMISRGCQGNPWIFREIAHFLE 244 Query: 252 GSSDTDADPVA-----VVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLS 306 + D A V++ I+ + +G+ + +H+ F +P + L Sbjct: 245 TGEELDKPSFAEWKETVLKHAKMLIDYKQDEGSAIREFRKHLTWYFAALPKTEILNQ-LK 303 Query: 307 ENAHK 311 E A+K Sbjct: 304 EEANK 308 >UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6M9N8_PARUW Length = 297 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 5/118 (4%) Query: 57 LAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 L Y+ HP+ QL GS P+ Q AK+ E G+D ++LN GCP D++ G+ L+ Sbjct: 18 LDYAANMHPIGGQLCGSKPSIAGQAAKIIEELGFDIVDLNCGCPVDKITKDGSGSGLLKT 77 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGIDDQD-SYEFLCDFINTVSGKGECEMFIIHAR 173 +L+ + V M V IPVTVK R G D+Q E + + + C IH R Sbjct: 78 PELIGEIVCNMVSAVKIPVTVKIRAGWDEQQIQVENIVQIVEQAGAQAIC----IHGR 131 >UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=Ixodes scapularis RepID=B7PPV8_IXOSC Length = 483 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 70/262 (26%), Positives = 116/262 (44%), Gaps = 40/262 (15%) Query: 1 MPEK-------TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRN---TLLYTEMVTTGAII 50 MPEK T S R+ VAPM+D ++ RLL R L YT M+ + Sbjct: 1 MPEKLAGYEFWTRTLKSPRYVVAPMVDQSE----LAWRLLGRRHGAQLCYTPMLHASVFL 56 Query: 51 HG---KGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNG 107 + D LA +E+ P+ +Q +DP L Q ++L ++LN+GCP + G Sbjct: 57 KDPKYRRDALASCDEDQPLVVQFCANDPEVLVQASRLVVGHCC-AVDLNLGCPQAIARAG 115 Query: 108 MFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEM 167 +GA L + L+A V+ + V +P+T K R+ + + + + + G C++ Sbjct: 116 HYGAFLQDDWDLLARMVQRVHTQVDVPITCKVRVFPEVEKTVR----YAQMLEAAG-CQV 170 Query: 168 FIIHAR----KAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH 223 +H R K +GL+ E+ + +KR + + NG I+ LE+A+ Sbjct: 171 LTVHGRTREQKGPHTGLASWEH----------IRAVKRSV-KIPVIANGNIQYLEDAERC 219 Query: 224 LQHM--DGVMVGREAYQNPGIL 243 L+ D VM NP + Sbjct: 220 LRETGADAVMSAEGHLHNPYLF 241 >UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GW95_SORC5 Length = 328 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 88/304 (28%), Positives = 142/304 (46%), Gaps = 29/304 (9%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPVALQLG 71 +APM D TD R R L L TE V ++ G LA ++ + P A+Q+ Sbjct: 19 LAPMEDVTDAVFRRIGRELGAE-LCVTEFVNVEGLLRGCKTARRKLALADGDQPTAIQIY 77 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G++P LA+ A++AE G +++N GC ++ GA + + + + + + V Sbjct: 78 GANPERLAEAARVAEEAGPAFLDINCGCWVPKIAGRGAGAGWLRDPEAMVAMARLVTRSV 137 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL--SGLSPKENREIP 189 ++PVTVKTRIG + S+ + D + G IH R A + SG + Sbjct: 138 ALPVTVKTRIGWGPE-SHMPIVDLARRLEDAG-VAALTIHCRTAQMGHSGAA-------- 187 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREAYQNPGIL---- 243 D+ + R+ + + +NG IK+ ++A L+ GVMVGR A +P I Sbjct: 188 --DWGWAAR-AREVVSIPVVVNGDIKTADDAARALRETGCAGVMVGRAAIDHPWIFREAR 244 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLG-HIT-RHMLGLFQGIPGARQW 301 A +D + T + +A+ RA I ++G G +T RH+ G +G+PGA Sbjct: 245 ALLDDGVHLPPPTAEERLALCRAH--LIANTEARGEPHGVRVTRRHLTGYLRGLPGASAL 302 Query: 302 RRYL 305 RR L Sbjct: 303 RREL 306 >UniRef50_B8P3J2 Predicted protein (Fragment) n=3 Tax=Agaricomycetes RepID=B8P3J2_POSPM Length = 260 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 68/265 (25%), Positives = 123/265 (46%), Gaps = 43/265 (16%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY------SEEEHPV 66 + APM++ +D R +R + TL+YT+M+ + +++ DYL + + PV Sbjct: 1 YIAAPMVNQSDLPFRRLVRRYNA-TLVYTQMLLSDRLLNDH-DYLQFHLRGLGEPNDRPV 58 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ--LVADCV 124 +QL G+DP + + K ++ D I+ N+GCP + ++ +GA L+G LV + Sbjct: 59 VVQLCGNDPELVVRAGKQVQSHC-DAIDFNLGCPQEAARDAHYGAYLLGQNDWPLVENIA 117 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS----GL 180 +M + +++PV+ K R LC S + + HA +W++ + Sbjct: 118 ASMSNSLTVPVSAKLR-----------LC---QPASATLDLARRLEHAGASWVTLHARTV 163 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQ 238 S + R+ D ++ LK + +S NG ++ E+ + + L DG+MVG Sbjct: 164 SVRRRRQ-GAADLEQIKTLKDNLSIPVIS-NGNVRVWEDVERNLALTGADGIMVGESLLA 221 Query: 239 NPGILAAVDREIFGSSDTDADPVAV 263 NP + A D DPVA+ Sbjct: 222 NPCLFA----------DITPDPVAI 236 >UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7S213_NEMVE Length = 570 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/253 (25%), Positives = 109/253 (43%), Gaps = 16/253 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE 62 EK + +S + +AP+ + R + + + EM ++ G+ A + Sbjct: 210 EKKRIDFSDKLYLAPLTTIGNLPFRRICKQYGAD-ITCGEMAMCTNLLQGQQSEWALVKR 268 Query: 63 ---EHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +QL G+ P + +CA+L + D I++N GCP D V N G+ LM Sbjct: 269 HSSEDIFGVQLCGAFPDTMTKCAELLQKETDVDFIDINTGCPIDLVFNKGAGSALMERKG 328 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + V+ M+ V+ IP+TVK R GI D+ + + G +M IH R Sbjct: 329 KLQQIVQGMKSVIDIPLTVKIRAGIHDKKYTWNAHKLVGNLRDWG-TDMVTIHGRS---- 383 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREA 236 +E R D+ + ++ + + + NG I S E+A H + + GVM+ R A Sbjct: 384 ----REQRYTKSADWDYISEVAKLASPMPVFGNGDILSFEDAMQHRKQAGVAGVMIARGA 439 Query: 237 YQNPGILAAVDRE 249 P I + + Sbjct: 440 IIKPWIFTEIKEQ 452 >UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3 n=3 Tax=Deltaproteobacteria RepID=Q1NXZ7_9DELT Length = 313 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 107/234 (45%), Gaps = 19/234 (8%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVALQLGG 72 AP+ ++D R R L Y+EM++ ++ + + LA + E P+ +QL G Sbjct: 18 APLAGYSDLPFRLLCREYGAG-LCYSEMLSCHGLVRRQPATIEMLATTAAERPLLMQLFG 76 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 ++P + + A + D I++N+GCP +V GA LM + +L A A+ Sbjct: 77 AEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKGAGAALMRDPELAAAITGAVTAAAG 136 Query: 133 -IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 +PVTVK R G + + DF + G + IHAR W G + + Sbjct: 137 DLPVTVKIRSGWNHKQINA--PDFARLLVAHGAAAV-TIHART-WSDGFTGRA------- 185 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGIL 243 D+ + +KR + + NG I S E+A A + DGVM+GR A P + Sbjct: 186 DWAVIAAVKRAV-SVPVIGNGDIGSYEQALAMMAATGCDGVMIGRGALGAPWVF 238 >UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Metazoa RepID=DUS4L_HUMAN Length = 317 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 74/308 (24%), Positives = 132/308 (42%), Gaps = 38/308 (12%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI---IHGKGDYLAYSEEEHPVALQLGG 72 APM+ ++ R +R S + L YT M+ I + ++ + P+ +Q Sbjct: 32 APMVRYSKLAFRTLVRKYSCD-LCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAA 90 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 +D L+ A++ + I++N GCP +GACL+ +LV D VK +R+ V Sbjct: 91 NDARLLSDAARIVCPYA-NGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149 Query: 133 IP---VTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 P V++K RI D + D G +H R A E R Sbjct: 150 TPGFSVSIKIRI----HDDLKRTVDLCQKAEATG-VSWITVHGRTA--------EERH-Q 195 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA--HLQHMDGVMVGREAYQNPGILAAVD 247 P+ Y + +K + + + NG I+SL+EA+ + DGVMV R NP + A Sbjct: 196 PVHYDSIKIIKENM-SIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFA--- 251 Query: 248 REIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 G +T ++ ++ +++ L GT +H++ + + I ++ R + + Sbjct: 252 ----GYEETP------LKCIWDWVDIALELGTPYMCFHQHLMYMMEKITSRQEKRVFNAL 301 Query: 308 NAHKAGAD 315 ++ A D Sbjct: 302 SSTSAIID 309 >UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC5FF0 Length = 322 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 73/312 (23%), Positives = 146/312 (46%), Gaps = 33/312 (10%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA-YSEEEHPVALQL 70 + +AP+ TD R L + LL+TEMV++ A+ ++ +QL Sbjct: 3 KIFIAPIAGVTDYTYRGILEEFQPD-LLFTEMVSSDALAALNDKTISQILRLRSGNGVQL 61 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G D + AK E G I++N GCP RV + G+ L+ + + + + + +R+ Sbjct: 62 FGKDTEKMIYSAKYIEKLGVKNIDINAGCPMKRVVHSGHGSALLKSPEKIKEILFTLREQ 121 Query: 131 V--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR-KAWL-SGLSPKENR 186 + S +++K R+G D ++Y I ++ + C +H R +A L +GL+ Sbjct: 122 LEESTKLSIKIRVGYDRPENYL----QIAKIAEEAGCSHITVHGRTRAQLYTGLA----- 172 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSI--NGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGI 242 D+ + ++K H+T+ + NG I + E AK ++ +DGVM+ R + NP + Sbjct: 173 -----DWSLIKEIKE---HVTIPVIGNGDIFTAEAAKEKIEDSGVDGVMLARGIFGNPWL 224 Query: 243 LAAVDREI--FGSSDTDADPVAVVRAMYPYI---ERELSQGTYLGHITRHMLGLFQGIPG 297 + + RE+ +G T + +I E + Q ++ + +H+ +GIP Sbjct: 225 IRDI-REMLQYGEVKTKVSTEDKIDMAIHHILKTEEDNPQREFVFDVRKHICWYLKGIPH 283 Query: 298 ARQWRRYLSENA 309 + +++ ++++ Sbjct: 284 SAEYKNRINQST 295 >UniRef50_Q0SMC0 Histidine phosphokinase/phophatase, putative n=16 Tax=Borrelia burgdorferi group RepID=Q0SMC0_BORAP Length = 334 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/243 (23%), Positives = 119/243 (48%), Gaps = 31/243 (12%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNT----LLYTEMVTTGAIIHGKGDYLAY-----SEEEHP 65 +APM D TD R + L+ + +TE ++ I++G + + +E P Sbjct: 14 LAPMEDVTDSVFRNLIHLIGSKEGEPHIYFTEFISVKGILNGSKQSIQHILLKPNELNRP 73 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + Q+ G+ P + ++ + G+ I++N+GCP +++ + L+ N L + + Sbjct: 74 LIAQIWGNVPEQFYKAIEILGSMGFWGIDINMGCPKNKIIKKGVCSALINNKSLAKEIIL 133 Query: 126 AMRDV---VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 A ++ ++P++VKTR G SY + +++ + G G +M ++ R A Sbjct: 134 ASKEACAKFNLPLSVKTRHGF----SYPEIDNWLGFLLGFG-IDMLTVYPRLA------- 181 Query: 183 KENREIPPLDYPRVYQ---LKRDFPHLTMSI-NGGIKSLEEAKAHLQH--MDGVMVGREA 236 N+ P+D+ Y+ L+ + T+ I NG + SL++A+ ++ +DG+M GR Sbjct: 182 -VNQSKGPVDFDIFYELVKLRNNISPSTLIIGNGDVWSLKDARYYVDKYLIDGIMFGRGI 240 Query: 237 YQN 239 ++N Sbjct: 241 FKN 243 >UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S217_FINM2 Length = 305 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 106/215 (49%), Gaps = 22/215 (10%) Query: 38 LLYTEMVTTGAIIHG---KGDYLAYSEEEHPVALQLGGSDPAALAQCAK-LAEARGYDEI 93 L +TEM++ + + L E ++Q+ G +P +A + L E + I Sbjct: 31 LCFTEMISAKGLYYDDKKTKKLLDTDPREKSTSVQIFGHEPEIIAYATRFLTENYNFKSI 90 Query: 94 NLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLC 153 ++N+GCP+ ++ G+ LMG+ L D ++A ++ +PV+VK R+GI D++S ++ Sbjct: 91 DINMGCPAPKIFKNGDGSALMGDLNLAEDVIRACKNNTDLPVSVKFRLGI-DENSMNYMQ 149 Query: 154 DFINTVSGKGECEMFIIHA--RKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSIN 211 + + + + + +HA RK + SG E L RV + D P N Sbjct: 150 --LAQICERLKVDYITLHARTRKMFYSG-------EADWLHIKRVVE-NVDIPVFG---N 196 Query: 212 GGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILA 244 G + E+ + ++++ DGV++ R A QNP I + Sbjct: 197 GDCFTKEDIRKNMEYSNCDGVLLARGAMQNPFIFS 231 >UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIR6_PETMO Length = 301 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 79/308 (25%), Positives = 139/308 (45%), Gaps = 44/308 (14%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAII--HGKGDYLAYSEEEHPVALQ 69 + +APM D+TD R R +TEM++ +II + K + + + E + +Q Sbjct: 5 QIGLAPMADYTDYPFREICRRFGAK-FTFTEMISVDSIIRENEKVEKMLPQKGEDNIGVQ 63 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 L G++ + AK + I++N CP ++V GA L+ N +L+ D V ++ Sbjct: 64 LFGNETTKFIEAAKSIQHLA-SWIDINAACPVNKVVKKGSGAALLKNPKLLGDIVFNLKK 122 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIH--ARKAWLSGLSPKENRE 187 + +PV VK R+G DQ + E + + + K + I+H R SG++ NRE Sbjct: 123 SIDLPVGVKVRLGY-DQINIEEVAETVE----KAGADYIIVHGRTRSQMYSGIA---NRE 174 Query: 188 IPPLDYPRVYQLKRDFPHLTMSI--NGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGIL 243 I LK+ +T+ + +G + S ++ +L + D V+V R A NP I Sbjct: 175 I----------LKKLKAKITIPLGASGDVFSKKDIDDYLLNYGADFVLVARGAIGNPWIF 224 Query: 244 A------AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 +D I DT + + ++ Y S+ + + ++ F GI G Sbjct: 225 TKNNYNPTIDERI----DTCLEHLKLMIEFYG------SEVYAVKKFRKVLMKYFSGIEG 274 Query: 298 ARQWRRYL 305 A++ RR L Sbjct: 275 AKEIRRNL 282 >UniRef50_D0J1P6 Dihydrouridine synthase, DuS n=7 Tax=cellular organisms RepID=D0J1P6_COMTE Length = 347 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 17/190 (8%) Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 PV QL GSDP ++A+ A G + I+LN GCP+ V GA L+ + + + V Sbjct: 64 PVRAQLLGSDPVSMAENAANLARLGPEGIDLNFGCPAKVVNRHGGGASLLQDPEQIVRVV 123 Query: 125 KAMRDVV--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 A+R V +PV+ K R+G +D+ + + + G CE+ ++HAR L G P Sbjct: 124 DAVRRAVPAQMPVSAKMRLGFNDR---ALMTECAQAMEQGGACEI-VVHARTK-LDGYRP 178 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAK--AHLQHMDGVMVGREAYQNP 240 E + PR+ R+ + + NG I ++EEA + D +M+GR +P Sbjct: 179 PAYWE----EIPRI----REAVGVNVVANGEIWTVEEALRCREVSGCDDLMLGRGIVADP 230 Query: 241 GILAAVDREI 250 G+ AV R + Sbjct: 231 GLALAVRRAV 240 >UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S141_OSTLU Length = 307 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 73/292 (25%), Positives = 124/292 (42%), Gaps = 30/292 (10%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPVAL 68 R+ VAPM+D ++ R + TL YT M+ + + + + S + P+ Sbjct: 17 RYHVAPMVDQSELAFRELCKRYG-ATLGYTPMIHARLFVESPKYRREIFSTSTRDRPLLA 75 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q +DP L + A + A D +++N GCP + G +GA LM + + V ++ + Sbjct: 76 QFCANDPEILLRAATMI-APYCDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEALIRKLD 134 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 + + +PVT K R+ D E + V G ++ +H R +E + Sbjct: 135 EELPVPVTAKIRV----YDDLETTLKYAKMVEAAG-AQIVAVHGRT--------REQKRC 181 Query: 189 PPLDYPRVY-QLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAA 245 + Y + +D + + NG I+SL EA+A L+ DGV+ NP + + Sbjct: 182 ADIRANWAYIRAIKDALKVPVLANGDIRSLAEARACLEATGADGVLSAEPLLSNPALFS- 240 Query: 246 VDREIFGSSDTDA------DPVAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 F ++ TD D VA V M Y + S T +I H+ L Sbjct: 241 --DPPFYAAPTDGYAPIPLDGVAAVDLMIEYFDICKSYTTSFSYIRGHVWKL 290 >UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaerococcus RepID=C7RGQ7_ANAPD Length = 326 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 86/335 (25%), Positives = 151/335 (45%), Gaps = 46/335 (13%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTL--LYTEMVTTGAI-IHGKGD----YLAYSEEEHPVA 67 +APM TD F ++ N +TEMV+ A+ + + Y AYSE+ Sbjct: 12 LAPMAGITDSA---FRQICEENGCDKTFTEMVSVNALDFNNRATEEIMYTAYSEKN--CN 66 Query: 68 LQLGGSDPAALAQCAK--LAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +Q+ G D + + K + ++EI+ N+GCP+ ++ N G+ LM + + V + K Sbjct: 67 IQIFGKDCDIIERVIKDKINPREDFEEISFNMGCPAPKIFNNGQGSALMRDVKKVYEIGK 126 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIH--ARKAWLSGLSPK 183 +++ V VK R+GIDD DS ++ + + G + I+H RK SG + Sbjct: 127 CLKESTDKIVNVKIRMGIDD-DSVNYI-EVGKALEDSG-IDYVILHGRTRKQQYSGKA-- 181 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSI----NGGIKSLEEAKAHLQHM--DGVMVGREAY 237 ++ + +LK T+SI NG + S+++ K L DGVM+ R A Sbjct: 182 --------NWQAIRKLKE-----TLSIPVIANGDVFSVKDYKDILDETGADGVMIARGAM 228 Query: 238 QNPGILAAVDREIFGSSDTD---ADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 NP I + I G + D +A ++ Y + + + + +H+ +G Sbjct: 229 GNPFIFRQIKDYIQGKETSPISYEDILATIKRQYELSLKYKKEKLVINQMRKHVGWYIKG 288 Query: 295 IPGARQWRRYLSENAHKAGADI-NVLEHALKLVAD 328 +P A +R + N K +I ++LE K + D Sbjct: 289 LPQAASYRDRV--NKLKTSEEIFDLLEEYRKFLED 321 >UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Alphaproteobacteria RepID=B9JF02_AGRRK Length = 342 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 109/240 (45%), Gaps = 20/240 (8%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA--YSEEEHPVALQ 69 R +APM TD R L L L+ TEMV + ++ + A S P +Q Sbjct: 28 RVILAPMSGVTDLPFRQ-LALRYGAGLVVTEMVASRELVQDTAESWARLKSAGLKPHMVQ 86 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 L G + +A+ AK+A G D I++N+GCP+ +V G G+ LM + ++A Sbjct: 87 LAGREAYWMAEAAKIAADNGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIEATVK 146 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 V +PVT+K R+G D+ I + + ++ IH R + + E R Sbjct: 147 AVDVPVTLKMRLGWDEN---SINAPHIARRAEEAGIQLVTIHGR----TRMQFYEGRA-- 197 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNP---GILA 244 D+ + + RD + + NG + + E+A L+ D VMVGR P G+LA Sbjct: 198 --DWDAIRAV-RDVISIPLVANGDVDTPEDASEILRRSGADAVMVGRGCQGRPWHAGVLA 254 >UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepID=Q2RZL4_SALRD Length = 443 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 82/332 (24%), Positives = 134/332 (40%), Gaps = 42/332 (12%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVALQLG 71 +APM D +D R + + ++YTE V++ ++ + L +EE P+ +Q+ Sbjct: 79 LAPMEDVSDPPFRILCKRYGAD-MMYTEFVSSAGLLREQEHEHQKLEIFDEERPIGIQVW 137 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G + + +A G D I++N GCP ++ GA ++ N + + A+ + Sbjct: 138 GGGIDEVRNATPMVDAAGPDVIDINFGCPVRKIVQKDGGAGVLRNLDKMRNITAAVMEEA 197 Query: 132 SIPVTVKTRIGIDDQ-----DSYEFLCDF---INTVSGKGECEMFIIHARKAWLSGLSPK 183 + PVTVKTR+G DD D L D TV + + + AR WL + + Sbjct: 198 TRPVTVKTRLGWDDDSIHIVDVARMLEDMGVAALTVHARTREQKYKGDARWEWLRTIKEE 257 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPG 241 R++P + NG E +A + +DGVM+GR A NP Sbjct: 258 GTRDMPFIG------------------NGDALDPEAIEAMFEETGVDGVMLGRGALGNPW 299 Query: 242 ILAAVDREIFGSSDTDADP-----VAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 I + + + P V VV L + T + + ++ F+G Sbjct: 300 IFERA-KTYMETGELPPPPDWEERVQVVAEHLSLKCEWLGERTGVMEMRKNYSSYFKGFR 358 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVAD 328 A R L + KAG VLE L D Sbjct: 359 NASTLRHELMQPETKAG----VLEVMLNFKPD 386 >UniRef50_B7XJM7 tRNA-dihydrouridine synthase 1 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XJM7_ENTBH Length = 309 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/319 (20%), Positives = 132/319 (41%), Gaps = 34/319 (10%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-----YLAYSEEEHPVALQLGG 72 M+ +++ R +R + + + YTEMV K D + ++ + P+ +Q+ G Sbjct: 1 MVSFSEEAFRILVRRYAVD-VCYTEMVNCKVFNQNKADPRKNRWYTTNDNDRPLVIQICG 59 Query: 73 SDPAA-LAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 +DP+ LA C ++ + D I++N+GCP + + G +G+ LM + + V + + + + + Sbjct: 60 NDPSEMLATCLQIQQY--CDAIDINLGCPQNIAKKGNYGSYLMDDFEKVKNIISTLAEQL 117 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 ++P+ K R+ +S E + + G C + +H R G +N Sbjct: 118 TVPIFCKIRVF----ESIEKTITYAKMIEKSG-CSLLAVHGRTREQKG----QNTGYVSF 168 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAK--AHLQHMDGVMVGREAYQNPGILAAVDRE 249 D+ R + P ++ NGG+ + + K + DG+M+G P I +++ Sbjct: 169 DHIRAVKNALSIPVVS---NGGVLTHRDIKNAVEITGCDGIMIGEPILFIPSIFVDIEK- 224 Query: 250 IFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENA 309 P + Y I HI H + + + + + Sbjct: 225 ----------PCINIFKEYLTIVNNNIHSATNKHIKGHAFKILKPLLNHNPKLQADIDRC 274 Query: 310 HKAGADINVLEHALKLVAD 328 IN ++HALK +D Sbjct: 275 RTIDDYINFIDHALKSNSD 293 >UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=Q8PX79_METMA Length = 323 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 80/311 (25%), Positives = 131/311 (42%), Gaps = 29/311 (9%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH-GKGDYLA--YSEEE 63 SG +APM D T+ R R + L YTEM+ A+++ + ++ SEE+ Sbjct: 11 TELSGNLLLAPMADVTNLAFRLLCRRYGAD-LTYTEMINVDALLNESRKSFIKGLSSEED 69 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEI-NLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 P +QL G P L + A E EI ++N+GCP+ + G+ L+ + +LV Sbjct: 70 RPFGVQLVGGCPDKLKRAALFIEEEYRPEIIDVNMGCPARCITGAGCGSALLNSPELVYS 129 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA--WLSGL 180 + + + + PV+ K R+ ++ + E I + K +H R A SG Sbjct: 130 IILELTESLDTPVSAKIRLLGREEKTLE-----IARLIEKAGASAVTVHGRTAAQMYSGN 184 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQ 238 S L+ R + + P + NG +K E A+ L+ DG+M+GR A Sbjct: 185 S--------NLEGIRAVKNELSIPVIA---NGDVKDEESAERTLELTGCDGLMIGRAAMG 233 Query: 239 NPGILAAVDREIFGSSDTDAD-PVAVVRAMYPYIERELSQGTYLGHITRHMLG--LFQGI 295 NP I + + AD P + YI L + L I M +G+ Sbjct: 234 NPFIFKKIRHYLETGEKLGADKPFRQLEDFNSYISL-LEEHNLLSSINLRMHAHWFTKGL 292 Query: 296 PGARQWRRYLS 306 G+R R ++ Sbjct: 293 RGSRHVREKIN 303 >UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Coriobacteriaceae RepID=C8WHM7_EGGLE Length = 330 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 74/269 (27%), Positives = 113/269 (42%), Gaps = 39/269 (14%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPV 66 S R +APM +D R R + L YTEMV+ + + L + E V Sbjct: 10 SRRLLLAPMAGVSDEAFRTLCREQGAD-LTYTEMVSAKGLSYANEKTRHLLRLAPGEDQV 68 Query: 67 ALQLGGSDPAALAQCAKLAE---ARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 A+QL G +P +A A E + +++N+GCP+ ++ + G+ LM + L A Sbjct: 69 AVQLFGHEPDTMAAQAAWIEREMGQSLAYLDINMGCPARKIVSKGDGSALMKDPALAASI 128 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA-------- 175 V+A+R VS PVTVK R G + D E +F + G C + +H R A Sbjct: 129 VRAVRAAVSRPVTVKFRRGWAEGD--ETAPEFARRMEDAGACAI-AVHGRYAEQLYRGRA 185 Query: 176 -WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMV 232 W + KE +P + NG ++S +A A + D VM+ Sbjct: 186 EWGAIARVKEAVSVPVVG------------------NGDVRSGADAVAITERTGCDAVMI 227 Query: 233 GREAYQNPGILAAVDREIFGSSDTDADPV 261 R A NP + A + G + D V Sbjct: 228 ARAAEGNPWLFAQAKAALAGEPEPDGPTV 256 >UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococcus RepID=C5WE57_STRDG Length = 354 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 21/249 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 DV R +APM T+ R + L+ EM++ +++ L E Sbjct: 41 DVEIPHRTVLAPMAGVTNSAFRTIAKEFGAG-LVVMEMISEKGLLYNNEKTLHMLHIDEN 99 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 EHP+++QL G D L + A + D +++N+GCP ++V GA + + + Sbjct: 100 EHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLRDPDKIY 159 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGE-CEMFIIHARKAWLSGL 180 VK + V+ IP+TVK R G D N ++ + +H R Sbjct: 160 HIVKEVTSVLDIPLTVKMRTGWADSS-----LAVENALAAESAGVSALAMHGRT------ 208 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQ 238 +E D+ + ++ + + NG ++S+++AK ++ + D VM+GR A Sbjct: 209 --REQMYTGTCDHETLARVSKAITKIPFIGNGDVRSVQDAKFMIEEIGVDAVMIGRAAMN 266 Query: 239 NPGILAAVD 247 NP + ++ Sbjct: 267 NPYLFTQIN 275 >UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium RepID=C6JNK3_FUSVA Length = 320 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 31/297 (10%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI-IHGKGDYLAYSEEEHPVALQL 70 + AP+ TD R L+ + LL+TEMV+ A+ + + ++QL Sbjct: 3 KIYTAPIAGVTDYTYRGILKEFKPD-LLFTEMVSINALEVACEKTLKVILRLREGDSVQL 61 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G D + + AK E+ G I++N GCP ++ N +GA LM +LV + +R Sbjct: 62 FGKDIKKMVESAKFVESLGVKHIDINSGCPMKKIVNNGYGAALMEQPELVKAMLSEVRSA 121 Query: 131 VS--IPVTVKTRIGI-DDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 ++ +++K R+G + ++ E I ++ + C+ IH R +E Sbjct: 122 LNDKTDLSIKIRVGYKESKNPVE-----IAKIAQETGCKHITIHGR--------TREQMY 168 Query: 188 IPPLDYPRVYQLKR--DFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGIL 243 D+ + ++K D P + NG I + E+AK + + +DG+M+ R + NP ++ Sbjct: 169 TGKADWSIIKEVKESVDIPVIG---NGDIFTAEDAKERVDYSGVDGIMLARGIFGNPWLI 225 Query: 244 AAVDREIFGSSD-----TDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 + RE F TD + + + E E + ++ + +H+ +GI Sbjct: 226 RDI-REYFEYGKILHPVTDIEKIDMAIKHTKRTEVEHPERPFIFELRKHLCWYLKGI 281 >UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=Actinobacteria (class) RepID=DUS_MYCTU Length = 389 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 83/312 (26%), Positives = 123/312 (39%), Gaps = 32/312 (10%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNT------LLYTEMVTTGAIIHGKGDYL---AYSEEEHP 65 +APM T+ R R L ++ L EMVT A+I + +S +E P Sbjct: 26 LAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADESP 85 Query: 66 VALQLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGN----AQLV 120 +LQL DP A++ G D I++N GCP +V GA L Q+V Sbjct: 86 RSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRRLFGQIV 145 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 A V+A + IPVTVK RIGIDD I +HAR A Sbjct: 146 AAAVRAT-EGTDIPVTVKFRIGIDDAHHTHLDAGRIAEAE---GAAAVALHARTA----- 196 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQ 238 R D+ ++ +LK+ + + NG I +A A + DGV++GR Sbjct: 197 ---AQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVVIGRGCLG 253 Query: 239 NPGILAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 P + A + GS T + ++R + + + I +H+ G Sbjct: 254 RPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKHIAWYLHG 313 Query: 295 IPGARQWRRYLS 306 P RR L+ Sbjct: 314 FPAGSALRRALA 325 >UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z0J5_9GAMM Length = 352 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 14/188 (7%) Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 ++Q+ GS+P LA A+L G D I++N+GCP+ +V G+ L+ + VA+ +KA Sbjct: 82 SVQIVGSEPQQLANAARLNADDGADVIDINMGCPAKKVCKKAAGSALLADEDRVAEILKA 141 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + V +PVT+K R G+ Q I ++ ++ +H R + +R Sbjct: 142 VVSAVDVPVTLKIRTGVSPQQRNGV---AIAKIAEDAGIQLLTVHGRT--------RADR 190 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREAYQNPGILA 244 +Y + ++ D + + NG I + +A A LQ G+M+GR A P + Sbjct: 191 FKGEAEYHTIERIV-DAVSIPVLANGDITTPAQALAVLQKTGAAGIMIGRAALGRPWLPG 249 Query: 245 AVDREIFG 252 A+ + + G Sbjct: 250 AIAQSLAG 257 >UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJW0_9FIRM Length = 319 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 75/303 (24%), Positives = 129/303 (42%), Gaps = 28/303 (9%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEEEHPVAL 68 + +AP+ TD R R + L++TEM++ + L ++ +E P+ + Sbjct: 11 KVILAPLAGVTDSSFRILAREMG-CALVFTEMISAKGAVCAPEQTLKIARFTAQERPIGI 69 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 QL GSDP A+ +L + D +++N+GCP +V G LM + KA+ Sbjct: 70 QLFGSDPEIFARATELCNGQAPDLLDINMGCPVKKVAGKGEGCALMRDPDKAYAITKAVC 129 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 D ++PVTVK R G DD + +G +H R G S + Sbjct: 130 DAATMPVTVKMRKGWDDSEVNAVEVALAVQEAGAAA---VTVHGRTR-AQGYSGRA---- 181 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAV 246 D+ + ++K + + NG I ++A+ LQ D VM+ R N L + Sbjct: 182 ---DWSVIARVKEAL-RVPVVGNGDIWEPQDAQRMLQQTGCDAVMLARGVLGN---LWLI 234 Query: 247 DREIF----GSSDTDADPVAVVRAMYPYIERELSQ-GTYLG--HITRHMLGLFQGIPGAR 299 R + G + + VR +++ + + G Y+G + +HM +G+ GA Sbjct: 235 RRTVHYLETGELLPEPEMAERVRLACRHLKMVVDEKGEYMGVREMRKHMAWYLKGMRGAA 294 Query: 300 QWR 302 Q R Sbjct: 295 QVR 297 >UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3V7_GEMAT Length = 349 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 15/190 (7%) Query: 57 LAYSEEEHPVALQLGGSDPAALAQCAKL-AEARGYDEINLNVGCPSDRVQNGMFGACLMG 115 L ++ EE P+ +Q+ GS+P+A+A A L + D +++N GCP +V G+ + Sbjct: 62 LRFAPEERPIGVQIFGSEPSAMADAAALVTDMFSPDFVDINFGCPVKKVVRRNGGSGCLK 121 Query: 116 NAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 + LV + ++A+ +PVTVKTR G +++ +G ++F +HAR Sbjct: 122 DLDLVEEIIRAVSKATPLPVTVKTRSGWNEEMRDPVGIALRMQDAG---AKVFALHARTR 178 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVG 233 EI RV + D P L NG IK+ +AK L H DG+M+G Sbjct: 179 TQMYSGSANWDEI-----ARVAE-ALDIPVLG---NGDIKTALDAKRMLDHTKADGIMIG 229 Query: 234 REAYQNPGIL 243 R +Y P + Sbjct: 230 RGSYGQPWVF 239 >UniRef50_Q127F8 Dihydrouridine synthase, DuS n=7 Tax=Proteobacteria RepID=Q127F8_POLSJ Length = 344 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 105/231 (45%), Gaps = 28/231 (12%) Query: 23 DRHCRYFLRLLSRNTLLYTEMVTTGAI--IHGKGDYLAYSEEEHPVALQLGGSDPAALAQ 80 DR F+R+ + L E V T + +H G LA PV QL GSDPA +A+ Sbjct: 33 DRCVSEFIRITDQ---LLPERVFTRIVPELHNGGRTLAGV----PVRAQLLGSDPACMAE 85 Query: 81 CAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV--SIPVTVK 138 A G I+LN GCP+ V GA L+ + + V A+R V +PV+ K Sbjct: 86 NAARLATLGPAGIDLNFGCPAAVVNRHGGGASLLKEPETLLAIVSAVRRAVPAGMPVSAK 145 Query: 139 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 198 R+G +D DS C G GE ++HAR K PP + R+ Sbjct: 146 MRLGYND-DSRAVECALAIAEGGAGE---LVVHART--------KAQAYKPPAYWERIAD 193 Query: 199 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDG---VMVGREAYQNPGILAAV 246 ++ + + NG I ++++A+ + G +M+GR A +PG+ A+ Sbjct: 194 IRAAV-QIPVVANGEIWTVDDAR-RCREASGCSMLMIGRGAVADPGLGLAI 242 >UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria RepID=B6YQB2_AZOPC Length = 340 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 30/244 (12%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAII------HGKGDYLAYSEEEHPVAL 68 +APM T+ + R + + ++YTE ++ A+I GK L EHP+A+ Sbjct: 22 LAPMEGVTNVYFRSLCKSFGAD-MVYTEFISADALIRHVDKIQGK---LKIINSEHPIAV 77 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ G D + + A++ E D ++LN GCP ++ GA ++ + + + + + Sbjct: 78 QIYGQDKDTMVEAARICEEMQPDFLDLNFGCPVKKIVRRNAGAGMLRVPKKMIEITQQVV 137 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA--WLSGLSPKENR 186 V+IP+TVKTR+G D+ + + D + G + IH R SG + Sbjct: 138 HSVNIPITVKTRLGWDENS--KIIVDLAERLQDTG-IALLTIHGRTGSQMYSGKA----- 189 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSI--NGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGI 242 D+ + +K + P + + I NG I S ++ + +D VM+GR + P I Sbjct: 190 -----DWNLIGAVKNN-PRMYIPICGNGDIVSPQQCEQAFNRYGVDAVMIGRASIGAPWI 243 Query: 243 LAAV 246 V Sbjct: 244 FQEV 247 >UniRef50_Q9HGN6 tRNA-dihydrouridine synthase 1 n=1 Tax=Schizosaccharomyces pombe RepID=DUS1_SCHPO Length = 399 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/240 (23%), Positives = 107/240 (44%), Gaps = 27/240 (11%) Query: 15 VAPMLDWTDRHCRYFLRL----LSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQL 70 +APM+D ++ R R L + + ++ + K EE P+ +Q Sbjct: 22 LAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTRTIPEERPLIIQF 81 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G+DP + + AK+A A D +++N+GCP + G +G+ L N L+ + + Sbjct: 82 CGNDPEIMLKAAKIA-APYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESIITKLHTE 140 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR----KAWLSGLSPKENR 186 +SIPVT K RI D Q + ++ + K + +H R K +G++ Sbjct: 141 LSIPVTAKIRIFPDPQKTLDYAKMIL-----KAGASILAVHGRLREQKGHFTGIA----- 190 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSI-NGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGIL 243 D+ ++ L+++ P T+ NG I ++ +++ +DGV+ + NP I Sbjct: 191 -----DWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIF 245 >UniRef50_B6JXB4 tRNA-dihydrouridine synthase n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6JXB4_SCHJY Length = 347 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 59/239 (24%), Positives = 112/239 (46%), Gaps = 24/239 (10%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS--EEEHPVALQL 70 F APM+ ++ R +R + + ++YT M+ +H +G Y +S E++ + +Q Sbjct: 22 FIAAPMVRYSKLPFRQLVRDYNAD-IVYTPMILAKEFLHPEGRYFDFSTNEKDRSLVVQF 80 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSD-RVQNGMFGACLMGNAQLVADCVKAMRD 129 G DP LAQ +++ A D I +N GCP +Q G+ G+ L+ Q V + V++++ Sbjct: 81 GVEDPVILAQASEIV-APYTDAIGINCGCPQPWAIQEGI-GSALLKQPQKVHELVRSVKS 138 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 + V+ +I +D + E + T G + +H R+ + +R Sbjct: 139 ALGETFCVEVKIRLD--NDLEKTRQLMQTAERAG-ADFITVHGRR--------RADRSSF 187 Query: 190 PLDYPRVYQLKRDFPHLTMSI--NGGIKSLEEAK--AHLQHMDGVMVGREAYQNPGILA 244 P+D + ++ P +++ + NG + L+ A + DGVM R +NP + A Sbjct: 188 PVDLEAIRSVR---PCVSIPVVANGDVNDLDTGLKIAEYTNTDGVMSARGLMENPALFA 243 >UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X244_DESRD Length = 328 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 78/302 (25%), Positives = 131/302 (43%), Gaps = 32/302 (10%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNT---LLYTEMVTTGAIIH---GKGDYLAYSEEEHPVAL 68 +AP+ +TD RLL R + +TEM++ +I+ G D LA + + P+ + Sbjct: 21 LAPLAGFTD----LPFRLLCRENGARVAHTEMISVKGLIYNSQGTWDLLATAPADTPLVV 76 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 QL G+DP AQ + RG+ I+LN GCP +V GA LM + Q + ++ + Sbjct: 77 QLFGADPDCFAQPVRWLTERGFHWIDLNAGCPVRKVIKTGAGAALMEDPQRLVRIMQTIG 136 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA--WLSGLSPKENR 186 + VK R+ D S + L +T++ G +H R A GL+ Sbjct: 137 RAAPVQAGVKLRLPADG--STDGLLRLRDTLARAG-VSWITLHPRTARQGYGGLA----- 188 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILA 244 + + ++ P + + +G + + + A+ + +DG+M R A NP I Sbjct: 189 -----QWSALSRMAESSP-VPIVASGDLWNAQAARRCFEQTGVDGIMFARGALHNPRIFK 242 Query: 245 ---AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 A E +DT A A+VR R + L + + +G PGA+Q Sbjct: 243 ADLATGAEEDPCTDT-ASIAALVRRHGQLCRRYDPSRSMLLKMRSFIPRYVKGFPGAKQA 301 Query: 302 RR 303 R+ Sbjct: 302 RK 303 >UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=Micromonas RepID=C1E909_9CHLO Length = 353 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 71/308 (23%), Positives = 131/308 (42%), Gaps = 35/308 (11%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPV 66 S +F VAPM+D ++ R R T YT M+ + + + + P+ Sbjct: 34 SPKFHVAPMVDQSELAFRELCRRHG-ATCAYTPMIHARLFVEDLKYRKEIFTTHINDRPL 92 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q +DP L + A + A D +++N GCP + G +GA LM + + V + + Sbjct: 93 LVQFCANDPDMLLKAASIV-APHCDGVDINFGCPQRIAKRGRYGAFLMDDWETVHNLINK 151 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + +S+PVT K R+ D E + V G ++ +H R +E + Sbjct: 152 LDKHLSVPVTAKIRV----YDDLETSLKYAKMVEAAG-AQLIAVHGRT--------REQK 198 Query: 187 EIPPL--DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGI 242 + ++ + ++K+ + + NG I++L EA+ L+ DGV+ +NP + Sbjct: 199 RAADVRANWAFIREIKKQL-KVPVLANGDIRTLAEAEKCLEATGADGVLSAEPLLENPSL 257 Query: 243 LAAVDREIFGSSDTDADPVAV-----VRAMYPYIERELSQGTYL----GHITRHMLGLFQ 293 + D ++ SD A P+ V ++ Y+E + T L GH+ + + Sbjct: 258 FS--DPPLYSPSDP-AHPLPVEGDVNCELLHEYLEITRTYQTPLRMVKGHVHNMVGSWLK 314 Query: 294 GIPGARQW 301 R W Sbjct: 315 EFTDLRDW 322 >UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria RepID=B7GFK6_ANOFW Length = 351 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 100/235 (42%), Gaps = 37/235 (15%) Query: 26 CRYFLRLLSRN---TLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSDPAALA 79 C RL + L+ EMV+ AI+ L E E P++LQ+ G + L Sbjct: 40 CNSAFRLTVKEFGAGLVCAEMVSDKAILFNNPKTMGMLYIDEREKPLSLQIFGGEKETLV 99 Query: 80 QCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 138 Q AK + D I++N+GCP ++ GA + + + D V A+ D V PVTVK Sbjct: 100 QAAKYVDQHTNADIIDINMGCPVPKITKCDAGAKWLLDPNKIYDMVAAVVDAVEKPVTVK 159 Query: 139 TRIGIDDQDSY--------EFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 RIG D+ Y E V G+ +M+ + W KE IP Sbjct: 160 MRIGWDENHIYAVENAQAVERAGGQAVAVHGRTRVQMY--EGKADWNVIKQVKEAVRIPV 217 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGIL 243 + NG +++ ++AK L+ +DGVM+GR A NP ++ Sbjct: 218 IG------------------NGDVQTPQDAKRMLEQTGVDGVMIGRAALGNPWMI 254 >UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTQ2_9FIRM Length = 310 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 116/248 (46%), Gaps = 24/248 (9%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLY--TEMVTTGAIIHGKGDYLAYSEE---EHPV 66 +F +APM +TDR R +L+ N L + TEMV+ A+ L ++ E Sbjct: 3 KFFMAPMAGYTDRAFR---QLIYENGLDHAVTEMVSARALCFNDRKTLELLKKFPGEKNT 59 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q+ SD ++++ + L + I++N+GCP+ ++ G+ L+ N LV + VK Sbjct: 60 GVQIFASDVESISKASYLLNDFDFSYIDINMGCPAPKIVKNGCGSALIKNPNLVYELVKG 119 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + +++KTR D+ S D I G + +H R +E Sbjct: 120 AVKNSNKKISIKTRKSFDNTLS----LDIIRAAQDAGAFAV-TVHPR--------SREEY 166 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA--KAHLQHMDGVMVGREAYQNPGILA 244 D+ + ++K+ F + + NG I ++E+A K +DG+ +GR A +NP I + Sbjct: 167 YKNKSDWQYLIKIKK-FLTIPLIGNGDILTVEDALYKIKKYDVDGIAIGRGAIENPLIFS 225 Query: 245 AVDREIFG 252 + + + G Sbjct: 226 QIKKALKG 233 >UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_DROME Length = 505 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 71/310 (22%), Positives = 130/310 (41%), Gaps = 45/310 (14%) Query: 10 SGRFSVAPMLDWTDRH----CRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHP 65 S R+ VAPM+D ++ CR + L + + + + T + D L E+ P Sbjct: 27 SPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKY--RKDALQTCPEDRP 84 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + +Q G+D + A LA+ D +++N+GCP + G +G+ L +L+ + V Sbjct: 85 LIIQFCGNDAQQILDAALLAQDHC-DAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVS 143 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR----KAWLSGLS 181 + +++PVT K RI D + + + + G C++ +H R K L+G++ Sbjct: 144 TLHAKLAVPVTCKIRIFEDLEKTIR----YAKMLEAAG-CQLLTVHGRTREQKGPLTGVA 198 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQN 239 ++ + +++ + M NG I +L++ L +DGVM N Sbjct: 199 ----------NWNYIKNVRQHI-KIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHN 247 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGAR 299 P I V ++ + + Y+E I H+ LF I R Sbjct: 248 PAIFKGVSPPVW-------------QMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIR 294 Query: 300 Q---WRRYLS 306 Q R+YL+ Sbjct: 295 QNSELRQYLA 304 >UniRef50_A2FU21 Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2FU21_TRIVA Length = 322 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 125/292 (42%), Gaps = 35/292 (11%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTT---GAIIHGKGDYLAYSEEEHPVALQLG 71 +AP + D R +R + L +T MV + + Y ++ P+ +Q+ Sbjct: 20 LAPQFEVNDLAFRMLVRKYNV-KLCWTGMVNSHMWAIQPSSRNSYFQTCSQDRPLIIQMS 78 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G+D + L CAK + I++N GC + G +G ++ N + ++ ++++V Sbjct: 79 GNDESELIACAKDLQQFAVG-IDINCGCTQHIARRGQYGYFMVNNENKRKNVIEMVKNIV 137 Query: 132 S---IPVTVKTRI--GIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + +P+++K R+ G D + + C F + G + +H R K + Sbjct: 138 ASINVPLSIKFRLIDGEDGKPDVDITCKFAKELEDAG-VSLISVHGRA--------KNSN 188 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILA 244 + P+D + ++ M+ NGG+++ EEA + H GVMVG+ NP Sbjct: 189 KAGPVDAEAIRKIAESVSIPVMA-NGGVRTKEEAIEMFKESHAAGVMVGQGLLMNPKAF- 246 Query: 245 AVDREIFGSSDT-DADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 SDT + DPVA+ R Y + +E + RH+ F I Sbjct: 247 ---------SDTPEHDPVAISRE-YLQLWKEYPDPNFF-IARRHIFNFFDEI 287 >UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomycota RepID=DUS1_YEAST Length = 423 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 107/245 (43%), Gaps = 36/245 (14%) Query: 15 VAPMLDWTDRHCRYFLRLLSRN---TLLYTEMV------TTGAIIHGKGDYLAYSEEEHP 65 VAPM+D ++ R+LSR TL YT M+ T+ L S + P Sbjct: 33 VAPMVDQSE----LAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDGSSVDRP 88 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + +Q +DP L AKL E + D ++LN+GCP + G +G+ LM L+ + + Sbjct: 89 LVVQFCANDPEYLLAAAKLVEDKC-DAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLIN 147 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR----KAWLSGLS 181 + + +PVT K RI D + S ++ V G + +H R K +GL+ Sbjct: 148 TLHKNLKVPVTAKIRIFDDCEKS----LNYAKMVLDAG-AQFLTVHGRVREQKGQKTGLA 202 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSI-NGGIKSLEEAKAHLQHM--DGVMVGREAYQ 238 ++ + L+ + P T+ NG I E+ ++H+ D VM Sbjct: 203 ----------NWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLY 252 Query: 239 NPGIL 243 NPG+ Sbjct: 253 NPGVF 257 >UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacteridae RepID=D2NNX0_9MICC Length = 442 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 85/312 (27%), Positives = 133/312 (42%), Gaps = 36/312 (11%) Query: 15 VAPMLDWTDRHCRYFLRLLSR--NTLLYTEMVTTGAIIHGKGDYLAYSE---EEHPVALQ 69 +APM T++ F RL S L TEMVT A++ K + + E +E ++Q Sbjct: 80 LAPMAGVTNK---AFRRLCSEYGGGLYVTEMVTARALVERKPESMRIIEHDPDEKIRSIQ 136 Query: 70 LGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 + G D + + ++ E D I+LN GCP+ +V GA L L V+ Sbjct: 137 IYGVDAVNVGKAVRMVVEEDRADHIDLNFGCPAPKVTRRGGGAALPWKTDLFTAIVQTAV 196 Query: 129 DVVS---IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW--LSGLSPK 183 S IP+T+K R GIDD D FL ++ +H R A SG + Sbjct: 197 KEASRNDIPLTIKMRKGIDD-DHITFLES--AKIARDAGVAAIALHGRTAAQHYSGKA-- 251 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPG 241 D+ + QL+ P + + NG I S E+A ++ +DGV++GR P Sbjct: 252 --------DWDSIAQLRELIPDVPILGNGDIFSAEDAVRMVEQTGVDGVVIGRGCQGRPW 303 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGI 295 + + GSS+ + V M Y EL T+ L I +H+ F+G Sbjct: 304 LFGDLQNAFEGSSERIRPTLTEVSDMI-YRHAELLVETFGDETRGLREIRKHVAWYFKGY 362 Query: 296 PGARQWRRYLSE 307 P + R +++ Sbjct: 363 PVGGELRAKMAQ 374 >UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium sp. NGR234 RepID=C3MBL4_RHISN Length = 342 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 21/241 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE-- 63 +V R ++APM TD R + TEMV + ++ + A + Sbjct: 21 NVEIRNRVALAPMSGVTDLPFRMLAWRFGAG-FVVTEMVASRELVGNAAESWARLKNSGI 79 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P +QL G + +A+ AK+ EA G D +++N+GCP+ +V G G+ LM + Sbjct: 80 DPHIVQLAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTGGYSGSALMRDPDHALSL 139 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK--AWLSGLS 181 ++A V +PVT+K R+G D+ I + + + IH R + +G + Sbjct: 140 IEATVKAVRVPVTLKMRLGWDEN---SINAPLIARRAEEAGVQAITIHGRTRMQFYNGNA 196 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQN 239 D+ + + RD + + NG + ++ +A L+ D VM+GR Sbjct: 197 ----------DWDAIRAV-RDVISIPLIANGDVDTIADAMEILRRSGADAVMLGRSCQGR 245 Query: 240 P 240 P Sbjct: 246 P 246 >UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax=Bacilli RepID=DUS1_BACSU Length = 333 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/250 (25%), Positives = 106/250 (42%), Gaps = 31/250 (12%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEE 62 D+ R +APM + R ++ L+ EMV+ AI++ L E Sbjct: 6 DIQLKNRVVLAPMAGVCNSAFRLTVKEFGAG-LVCAEMVSDKAILYNNARTMGMLYIDER 64 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E P++LQ+ G L + AK + D I++N+GCP ++ GA + + + Sbjct: 65 EKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDPDKIY 124 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFL-CDFINTVSGK-----GECEMFIIHARKA 175 + V A+ D V+ PVTVK R+G D+ + + GK G + + Sbjct: 125 EMVSAVVDAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQMYEGTAN 184 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVG 233 W K++ IP + NG +K+ ++AK L +DGVM+G Sbjct: 185 WDIIKEVKQSVSIPVIG------------------NGDVKTPQDAKRMLDETGVDGVMIG 226 Query: 234 REAYQNPGIL 243 R A NP ++ Sbjct: 227 RAALGNPWMI 236 >UniRef50_Q9CJW1 tRNA-dihydrouridine synthase C n=7 Tax=Gammaproteobacteria RepID=DUSC_PASMU Length = 312 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 77/322 (23%), Positives = 130/322 (40%), Gaps = 41/322 (12%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMV-TTGAIIHGKGDYLAYSE--------E 62 R +APM D R L +++ L +E V ++ K Y E Sbjct: 2 RVILAPMQGVLDPFVRQLLTQVNQYDLCVSEFVRVVDQLLPTKVFYRLCPELYQQGLTAS 61 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 PV +QL G P LA+ A+ A G I+LN GCPS V GA L+ +L+ Sbjct: 62 GTPVRVQLLGQHPQWLAENAQRAIELGSHGIDLNCGCPSKTVNGSNGGASLLKQPELIYH 121 Query: 123 CVKAMRDVV--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 KA+R V ++PV+VK R+G D+ + + D + +G IH R Sbjct: 122 ATKALRAAVPKALPVSVKVRLGWDNSEQAFEIADAVQ----QGGATEITIHGR------- 170 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQ 238 + + +++ ++ +++ + + NG I + +A L +M+GR A Sbjct: 171 TKMDGYRADRINWAKINDVRQRL-SIPVIANGEIWDWQSGQACLAETGCQDLMIGRGALN 229 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 P + V F + V ++ Y + E + G Y H+ R Sbjct: 230 IPNLSQVVK---FNQAKMPWAEVLILLHQYAHTENQFDTGFY--HVAR-----------I 273 Query: 299 RQWRRYLSENAHKAGADINVLE 320 +QW YL + +A A +++ Sbjct: 274 KQWLGYLKKAYPQADALFQLIK 295 >UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZR9_9PLAN Length = 355 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 70/142 (49%), Gaps = 11/142 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPV 66 + R+ +AP+ +T R +R L L T++V ++ G L S + P+ Sbjct: 22 ASRYFLAPLAGYTQHAFRVAIRELGGVGLCTTDLVLASHLLSGSRKSKALLTTSPADRPL 81 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLM----GNAQLVAD 122 +Q+ G A L A+ E GY ++LN+GCP ++ GA +M QLVA+ Sbjct: 82 TIQIFGGITAELVAAARWLEQHGYAAVDLNMGCPMAKINGNGGGARIMCAPDAACQLVAE 141 Query: 123 CVKAMRDVVSIPVTVKTRIGID 144 V D VSIPVTVK R+G D Sbjct: 142 VV----DAVSIPVTVKMRLGWD 159 >UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9Q3_9FIRM Length = 329 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 59/247 (23%), Positives = 112/247 (45%), Gaps = 24/247 (9%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHP---VAL 68 +APM T R F+R + + +EMV+ + + + + +E EH + Sbjct: 20 LAPMAGVTTLPYRLFMREMGCKIFI-SEMVSAKGLYYKSKNTFPLMETNELEHKDSVTGI 78 Query: 69 QLGGSDPAALAQCA-KLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 Q+ GS+P + + + +D I++N+GCP ++ N G+ L+ + V+ + Sbjct: 79 QIFGSEPEIMGEITERYINDTAFDFIDINMGCPMKKIVNNGDGSALLKDLDKANKVVREV 138 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + S PV+VK R+G ++ + D I + G +M +H R +E Sbjct: 139 KSASSKPVSVKVRLGFNEN----IIEDIIKAIEDGG-ADMITVHGR--------TREQVF 185 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAA 245 +DY + + K + + + NG + + +AK + + DGVM+GR A +P I + Sbjct: 186 TGEVDYDGIKKAK-ETASVPLIANGDLDNYLKAKEKMDYTGADGVMIGRGANYDPFIFSQ 244 Query: 246 VDREIFG 252 + I G Sbjct: 245 FNECISG 251 >UniRef50_Q1ZGI3 NifR3/Smm1 family protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGI3_9GAMM Length = 313 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 108/248 (43%), Gaps = 34/248 (13%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH------- 64 + ++APM D H R L L L TE + ++ Y S E Sbjct: 2 KITLAPMEGVMDHHMRALLTSLGGIDLCVTEFIRVISLTLPAKVYRRVSPELFNQSKTPS 61 Query: 65 --PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 PV +QL G DP LA A+ A G D I+LN GCP+ V GA L+ + + + Sbjct: 62 GTPVRIQLLGQDPQCLANNARKALLVGSDGIDLNFGCPAKAVNKSKGGAILLKSPETLYK 121 Query: 123 CVKAMRDVVSI--PVTVKTRIGIDDQ----DSYEFLCDFINTVSGKGECEMFIIHARKAW 176 VK +R + ++VK R+G D+ ++ + +C+ +G E +HAR Sbjct: 122 IVKEVRASMHTCETLSVKIRLGYADKSLAIENAQAICE-----AGANE---LAVHART-- 171 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA--HLQHMDGVMVGR 234 KE PP + + ++ R+ + ++ NG I S E+AK + +M+GR Sbjct: 172 ------KEEGYAPPAHWHWIAKI-RESIDIPVTANGDIFSAEDAKRCHEISGCHSLMIGR 224 Query: 235 EAYQNPGI 242 A P + Sbjct: 225 GALATPNL 232 >UniRef50_C2FRE5 tRNA-dihydrouridine synthase n=3 Tax=Lactobacillus plantarum RepID=C2FRE5_LACPL Length = 357 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 108/244 (44%), Gaps = 32/244 (13%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI--------IHGKGDYLAYSEEEH 64 F++APM ++ R + + ++E V +I +HG+ Y+A +E + Sbjct: 42 FTMAPMEAVSNTVFRQVISHAAAPDTFFSEFVYAKSITNPNTKFPVHGRL-YVAAAESQK 100 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 PV +QL G++ A A RG+ +++N+GCP V G+ L+ N Q D + Sbjct: 101 PV-VQLWGNEAADFASATAELRDRGFKAVDINMGCPDGTVIKNHGGSDLIRNPQWAEDVI 159 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 A + + V+ KTR+G Y D+I T+ + + +H R K+ Sbjct: 160 AAAK-TSGLAVSAKTRLGYSKVAEYH---DWIATLLSQ-HVAVLTVHLRT--------KQ 206 Query: 185 NREIPPLDYPRVYQL--KRD--FPHLTMSINGGIKSLEE----AKAHLQHMDGVMVGREA 236 P + + L RD P + ING + + AKAH +DG+M+GR Sbjct: 207 EMSKVPAHFEVIDDLIKMRDAIAPETLLQINGDVADYQAGVALAKAH-PGLDGIMIGRGV 265 Query: 237 YQNP 240 + NP Sbjct: 266 FANP 269 >UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like (S. cerevisiae) n=2 Tax=Taeniopygia guttata RepID=UPI000194DF67 Length = 718 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 103/252 (40%), Gaps = 17/252 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE 62 EK + G+ +AP+ + R + + + EM ++ G+ A + Sbjct: 365 EKKKLEIQGKLYLAPLTTCGNLPFRRICKRFGAD-VTCGEMAVCTNLLQGQSSEWALLKR 423 Query: 63 EHP---VALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 H +QL G+ P + +CA+L D +++NVGCP D V G LM + Sbjct: 424 HHTEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMTRSN 483 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 V+ M V+ +PVTVK R G+ Q+ I + G M +H R Sbjct: 484 KFEQIVRGMNSVLDVPVTVKIRTGV--QEKVNVAHKLIPRIREWG-ASMVTLHGRS---- 536 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAY 237 +E R D+ + + R + + NG I S E+A +Q + G+M+ R A Sbjct: 537 ----REQRYTRSADWHYIAECARLASPMPLFGNGDILSYEDANRAMQMGVSGIMIARGAL 592 Query: 238 QNPGILAAVDRE 249 P + + + Sbjct: 593 IKPWLFTEIKEQ 604 >UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP3_FIBSS Length = 392 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 114/245 (46%), Gaps = 25/245 (10%) Query: 15 VAPMLDWTDRHCRYFLRLLS--RNTLLYTEMVTTG--AIIHGKG-DYLAYSEEEHPVALQ 69 ++PM TD R R+LS R LL +E V T A+ + G L + EE P +Q Sbjct: 26 LSPMDGVTDAPFRRLCRVLSGDRMGLLVSEFVPTDGDAVFNPDGHKQLKFFPEERPFGVQ 85 Query: 70 LGGSDPAALAQCA-KLAEARGYDEINLNVGCPSDRVQNGMFGACLMGN---AQLVADCVK 125 + G P +A A K+AE + I +N GCP+ +V G+ L+ + Q + VK Sbjct: 86 IFGRFPDRMAAAAGKIAERYHPEFIEVNAGCPAPKVAGKGSGSGLLRDLPRLQEILHDVK 145 Query: 126 AMRDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 A+ D + IP+T+K RIG DD DS + + + G+G EM +H R L G + Sbjct: 146 AVLDAKTPEIPLTLKCRIGWDD-DSINVM-ETLKIAEGEG-VEMLTVHGRTR-LQGYNGL 201 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPG 241 N D+ P + NG + S+E A+ + + GV +GR A NP Sbjct: 202 AN-----WDWIGKVAAAAKIPVIG---NGDVNSVECARERINTYGVSGVSIGRGAMHNPW 253 Query: 242 ILAAV 246 I + Sbjct: 254 IFGQI 258 >UniRef50_B8C389 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C389_THAPS Length = 615 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 108/240 (45%), Gaps = 23/240 (9%) Query: 15 VAPMLDWTDRHCRYFLRLLSRN---TLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVAL 68 +APM+ ++ RLL R TL YT M+++ + + +A S P+ Sbjct: 95 LAPMVGASE----LAFRLLCRKYGATLSYTPMMSSSQFVQEAASMKNTVADSNLYRPLVC 150 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMG--NAQLVADCVKA 126 + P A+ AKL E + D I+LN+GCP G FG+ L+G + +LV V+A Sbjct: 151 HFSANQPQDFAKAAKLVE-KYCDAIDLNLGCPQRTAFIGHFGSYLLGQKDRKLVLSIVRA 209 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR-KAWLSGLSPKEN 185 VSIP+ VK R+ +D + LC + + IHAR +A P Sbjct: 210 GSKAVSIPIFVKIRL-LDTVEETTKLCHELRDAGA----SLIAIHARYRATWERTGPGA- 263 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGIL 243 R+ P L +V +K+ P + NG + + ++ ++ Q DG+M NP + Sbjct: 264 RDGPAL-LDQVAVVKQSMPDFPIIANGNVITYDDVISNKQSTGADGIMSAEGILDNPALF 322 >UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=Alphaproteobacteria RepID=DUS_RHILP Length = 317 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 104/246 (42%), Gaps = 32/246 (13%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE--HPVALQ 69 R +APM TD R L+ TEMV + +++ + + + P +Q Sbjct: 6 RVVLAPMSGVTDMPFRELAWRFGAG-LVVTEMVASRELVNDTAESWSRLKAAGFRPHMVQ 64 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 L G + +A+ AK+A G D I++N+GCP+ +V G G+ LM + ++A Sbjct: 65 LAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIEATVK 124 Query: 130 VVSIPVTVKTRIGIDDQD------SYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 V IPVT+K R+G D+ + I V+ G M R W + + + Sbjct: 125 AVDIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIHGRTRMQFYEGRADWDAIRAVR 184 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNP- 240 E +P + NG +++ +A+ L+ D VM+GR P Sbjct: 185 EVISVP------------------LIANGDVETAHDAQEILRRSGADAVMIGRGCQGRPW 226 Query: 241 --GILA 244 G+LA Sbjct: 227 HAGVLA 232 >UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa RepID=B3RKU4_TRIAD Length = 581 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/250 (24%), Positives = 108/250 (43%), Gaps = 18/250 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY--- 59 EK +++S + +AP+ + R + + + +EM ++ G+ A Sbjct: 227 EKKQINFSNKLFLAPLTTVGNLPFRRICKTFGAD-VTCSEMALCTNLLQGQQSEWALVKR 285 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E E LQ+ G+ P LA+ ++ R D ++LN+GCP D V + G+ LMG A Sbjct: 286 HESEDLFGLQVCGAWPDTLARLSEYINDRVNVDFVDLNLGCPIDLVFHQGAGSALMGRAN 345 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + V M ++S+P+TVK R GI + S I + G + +H R Sbjct: 346 KLQQIVTGMSSILSVPLTVKLRTGILAKKSTAH--KLIPQIREWG-ASLVTLHGRS---- 398 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREA 236 +E R D+ + + + + NG I S E+ H+ + + GVM+ R A Sbjct: 399 ----REQRYTKLADWSYINECATAADPMPLIGNGDILSFEDYLEHMNNTNVAGVMIARGA 454 Query: 237 YQNPGILAAV 246 P + + Sbjct: 455 LIKPWLFTEI 464 >UniRef50_A8BQT4 tRNA dihydrouridine synthase, putative n=2 Tax=Giardia intestinalis RepID=A8BQT4_GIALA Length = 462 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 70/277 (25%), Positives = 115/277 (41%), Gaps = 52/277 (18%) Query: 5 TDVHWSGRFS-----VAPMLDWTDRHCRYFLRLLSRN---TLLYTEMVTTGAIIHGKG-- 54 TD W + +APM+D ++ RLL+R L +T M +T ++ Sbjct: 6 TDPEWYVKLGSPTKGIAPMVDGSE----LPYRLLTRRYGVELAWTPMHSTNTLVTSSKAM 61 Query: 55 ----DYLAYSEE-EHPVALQLGGSDPA----ALAQCAKLAEARGYDEINLNVGCPSDRVQ 105 D L + E + P+ LQL G++P+ A ++ +D + LN+GCP Sbjct: 62 TQLVDELKHGESIDRPLVLQLSGNNPSNFELAYNTLVQMGAGCCFDVVELNMGCPQAVAL 121 Query: 106 NGMFGACLMGNAQLVADCVKAM-----RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVS 160 G +GA LMG+ L + ++ + R + V VKTR+ I D+D+ + +T Sbjct: 122 RGKYGAYLMGHLDLAEEILRTLVAVTARSGLGHKVAVKTRLDISDKDTVKMCLRLCST-- 179 Query: 161 GKGECEMFIIHARKAWLSGLSPKENREIPPLDYPR-------VYQLKRDFPHLTMSINGG 213 MF +H R + R + P + L+ +PHL NGG Sbjct: 180 ---GIAMFTLHGRT--------RLQRTGSAVGLPDWQALASILNNLRASYPHLIFFANGG 228 Query: 214 IKSLEEAKAHLQHMD---GVMVGREAYQNPGILAAVD 247 + +L E HL+ + G M +N G+ D Sbjct: 229 VWNL-ETHEHLRSLTGCHGTMSASMLTENAGVYNCRD 264 >UniRef50_Q5ZRM0 Nitrogen regulation protein n=6 Tax=Legionella RepID=Q5ZRM0_LEGPH Length = 329 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 99/205 (48%), Gaps = 20/205 (9%) Query: 41 TEMVTTGAIIH---GKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNV 97 +EM + I+H + Y+ + E +A Q+ G++P LA+ A ++ G D I++N Sbjct: 49 SEMCSAIDILHKHSSQSRYIYRAPTEKFLAYQISGNEPHVLAEAAAKLQSLGADLIDINC 108 Query: 98 GCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFIN 157 GCP +++ G+ L+ + Q + + +R +SIP+T+K RI +++D Sbjct: 109 GCPKSKIRKKGAGSALLEDPQKLIAIISRVRAAISIPLTIKIRIQNNEKD-----LTLAK 163 Query: 158 TVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSL 217 + G I+H R+ W E+ +I P ++ ++ +K ++ + +NG I ++ Sbjct: 164 QIEDAG-AHALIVHGRR-W------TEDYDI-PCNWQQIANIKNAV-NIPVIVNGDINNI 213 Query: 218 EEAKAHLQ--HMDGVMVGREAYQNP 240 + L+ DG M+ R P Sbjct: 214 FSLRKALEISACDGFMISRAGTGKP 238 >UniRef50_Q47C15 Dihydrouridine synthase, DuS n=1 Tax=Dechloromonas aromatica RCB RepID=Q47C15_DECAR Length = 319 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 19/196 (9%) Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+ +QL GSDP +A+ A+ A ++LN GCP+ V G+ L+G +L+ + Sbjct: 65 PMRVQLLGSDPHFMAENARRLVALNPAGVDLNFGCPAPTVFRHRGGSALLGEPELLNEIT 124 Query: 125 KAMRDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 A+R VV IP T K R+GIDD S C +G E I+H R Sbjct: 125 SAVRSVVPAHIPFTAKMRLGIDDT-SRAIDCAQALEAAGINE---LIVHGRT-------- 172 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDG---VMVGREAYQN 239 + + PP + + ++ RD H+ + NG + ++E+ + + Q G +MVGR A + Sbjct: 173 RSDGYRPPARWEWIDKV-RDAIHIPLIANGEVWTVEDFR-NCQLATGCADIMVGRGAVAD 230 Query: 240 PGILAAVDREIFGSSD 255 P + V E G D Sbjct: 231 PLLARRVRGEETGGWD 246 >UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax=Bacteria RepID=Q9RDC6_STRCO Length = 406 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 67/255 (26%), Positives = 105/255 (41%), Gaps = 19/255 (7%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLY-TEMVTTGAIIHGKGDYLA---YSEEEHPVALQL 70 +APM T+ R R S L+ +EM+TT A++ + + E P ++QL Sbjct: 29 LAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALVERNEKTMQLIHFDATETPRSIQL 88 Query: 71 GGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK-AMR 128 G DP + + ++ G D I+LN GCP +V G+ L L+ V+ A+ Sbjct: 89 YGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLRAIVREAVT 148 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 +PVT+K R G+DD I G +H R Sbjct: 149 GAGDLPVTMKMRKGLDDDHLTYLDAGRIAVEEG---VTAIALHGRTT--------AQHYG 197 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAV 246 D+ + +LK P + + NG I S E+A ++ DGV+VGR P + A + Sbjct: 198 GTADWDAIARLKEHVPEIPVLGNGDIWSAEDALRMVRETGCDGVVVGRGCLGRPWLFADL 257 Query: 247 DREIFGSSDTDADPV 261 G +D+ P Sbjct: 258 VAAFEGRTDSFVRPT 272 >UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NSS9_9BIFI Length = 422 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 73/269 (27%), Positives = 112/269 (41%), Gaps = 30/269 (11%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEE 62 +VH ++PM T+ R + L EM+T A++ L ++ Sbjct: 50 NVHVGTPVILSPMAGVTNWPFRVLCEQYGPDGLYVAEMITARALVARNPKALRLCRFAPS 109 Query: 63 EHPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E +LQL G +P+ + Q AK+ + + D ++LN GCP +V G+ L L Sbjct: 110 ERIRSLQLYGVNPSIMEQAAKIVVDEQMADHVDLNFGCPVPKVTRRGGGSALPWKTDLFT 169 Query: 122 DCV-KAMR--DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA--W 176 D V + +R D IPVT K R+GID + I G C+ +HAR + Sbjct: 170 DVVSRVVRVCDAAGIPVTAKIRVGIDHEHETFHEAGHIAQEEG---CKAVTLHARTTAEY 226 Query: 177 LSGLSPKENREIPPLDYPRVYQL--KRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMV 232 G S D+ R+ +L + D P NG I +A A ++ GV + Sbjct: 227 YGGHS----------DWSRIGELVEQLDVPVFG---NGDIWGAADALAMVEQTGCAGVAI 273 Query: 233 GREAYQNPGILAAVDREIFGSSDTDADPV 261 GR P + A + + F SD DP Sbjct: 274 GRGCQGRPWLFADI-KHAFAGSDERTDPT 301 >UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJZ7_9BACT Length = 340 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 79/320 (24%), Positives = 142/320 (44%), Gaps = 58/320 (18%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD----YLAYSEEEHPVA 67 + AP+ T R LR + L+YTEMV+ + K D YL+ +E + P+ Sbjct: 19 KLIAAPLAGVTTPPFRKLLRKYF-DGLIYTEMVSVEGV-RRKADRTLSYLSITESDQPIG 76 Query: 68 LQLGGSDPAALAQCAKLAEARGYDE-INLNVGCPSDRVQNGMFGACLM----GNAQLVAD 122 +QL GS P A + ++ + E +++N+GCP +V G +M + ++VA Sbjct: 77 VQLFGSKPEAYTEAIEVVQDYIKAEFVDINMGCPVKKVLKSGSGCAMMKDPVNSGKIVAA 136 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQD---------SYEFLCDFINTVSGKGECEMFIIHAR 173 KA+ DV P+TVK R+G D ++ +YE + + TV G+ + EMF Sbjct: 137 AKKALGDV---PLTVKIRLGWDKKNLNYNEMIKIAYEEGAEAV-TVHGRTKTEMF----- 187 Query: 174 KAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMV 232 SG+ ++Y + K + L + NG + + + L +DGVM+ Sbjct: 188 ----SGV----------VNYDLIADAKAN-AKLPIIGNGDVVDVATYEKMLATGVDGVMI 232 Query: 233 GREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIE-----RELSQGT--YLGHIT 285 GR + P + ++ + D +Y I+ ++ +G +L + Sbjct: 233 GRGMMKQPWLFESI------LNGRDPSGYMTYDKLYELIKELVRNEKIYKGEMFFLETVK 286 Query: 286 RHMLGLFQGIPGARQWRRYL 305 ++++ +G+PGA R L Sbjct: 287 KYIVWFLKGMPGAAALRNKL 306 >UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseriaceae RepID=C5TM05_NEIFL Length = 321 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 69/258 (26%), Positives = 111/258 (43%), Gaps = 26/258 (10%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE---------EHP 65 +APM D R L + +E V +H + +L Y E P Sbjct: 5 LAPMQGLVDDVMRDLLTRIGGFDECVSEFVRITHTVHSRATWLKYVPEIAHANRTTAGTP 64 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +QL GSD +A A A G D+I+LN GCP+ V GA L+ L+ V Sbjct: 65 CTVQLLGSDAENMAVNALEAVRFGADKIDLNFGCPAPTVNKHKGGAVLLKEPDLIYHIVH 124 Query: 126 AMRDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 +R + IP+T K R+G +D+ S C + + G C + +HAR + Sbjct: 125 TLRQRLPQHIPLTAKMRLGYEDK-SLALEC--ASAIENGGACAL-TVHAR-------TKV 173 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAK--AHLQHMDGVMVGREAYQNPG 241 E E PP + V ++ RD ++ ++ NG + +L++ + + VM+GR A P Sbjct: 174 EGYE-PPAHWEWVRKI-RDAVNIPVTANGDVFNLQDYLDIKSVSGCNSVMLGRGAVIRPD 231 Query: 242 ILAAVDREIFGSSDTDAD 259 + + + G + D D Sbjct: 232 LARQIKQYENGETVKDTD 249 >UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54XQ6_DICDI Length = 435 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 25/254 (9%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRN---TLLYTEMVTTGAIIHGKG---DYLAY 59 +V S + +VAPM+D H R+L R ++YT M + K DY + Sbjct: 47 NVLKSPKKTVAPMVD----HTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRRDYWST 102 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 E+ P+ +Q G++P + + AK E D I+LN+GCP + G +G+ L+ + Sbjct: 103 CPEDRPLVVQFCGNEPEWVVKAAKYIEDHC-DAIDLNLGCPQQIARRGNYGSFLLDKPHI 161 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 + V+ + + +P+ K R+ + D+ + + C++ IH R G Sbjct: 162 ILPIVQELHKHIKVPIFCKIRLLPNLDDTIKLALQL-----QEAGCQLLTIHGRTKEQKG 216 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAY 237 N I R + + P + NG + E+ L+ DGVM Sbjct: 217 ----HNSGIANWKAIRTIREQLSIPVIA---NGSVVQYEDIDRCLEETGADGVMSAEGIL 269 Query: 238 QNPGILAAVDREIF 251 NP + + I+ Sbjct: 270 ANPSFFSGLKVPIY 283 >UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJX3_HALO1 Length = 348 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 24/236 (10%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVALQLG 71 +APM TD R L TE + A+ G D L S + +Q+ Sbjct: 20 LAPMAAVTDLPFRTICERFGVG-LTITEFLKATALCDGDAEVVDKLTASLDGVRFGVQIY 78 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G + L Q A+LA G I++N+GCP+ RV G GA LM +L A+ V+A+ V Sbjct: 79 GREVEPLVQAAQLALDIGASLIDINMGCPAKRVVAGECGAALMQWPELSAELVRAVVASV 138 Query: 132 --SIPVTVKTRIGID--DQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 S+PVTVK R G + ++++ EF C + + +M +H R G + + E Sbjct: 139 PDSVPVTVKHRAGWNPLNRNAPEFACAMVEAGA-----QMVTVHGRTR-TQGFAGSVDLE 192 Query: 188 IPPLDYPRVYQLKRDFP-HLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNP 240 + + +++ P + + NG + +++ +H D VM+GR A NP Sbjct: 193 V-------IRRVREAVPARVPVVGNGDVVCVDDYLRMREHTGCDAVMIGRGALGNP 241 >UniRef50_A4BCJ5 NifR3/Smm1 family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BCJ5_9GAMM Length = 314 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 73/261 (27%), Positives = 110/261 (42%), Gaps = 36/261 (13%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH---------P 65 +APM D + R + L +E V + K +L E H P Sbjct: 5 LAPMEGLADHYLRKLITQCGGYDLAVSEFVRVVDQLLPKRVFLEQVPELHQQGRTGAGTP 64 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 V +QL GS P ALA+ A A G ++LN GCPS V GA L+ + + V+ Sbjct: 65 VRVQLLGSHPQALAENALRAIELGSHGLDLNFGCPSKTVNASKGGAVLLTEPESIYAVVR 124 Query: 126 AMRDVV--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 ++RD + ++ K R+G +D +S + C G E I+HAR G +P Sbjct: 125 SVRDALPGDQTLSAKMRLGFED-NSLMWECAHAIRDGGANE---IIVHARTK-QQGYTP- 178 Query: 184 ENREIPPLDYPRVYQLKRDFPH---LTMSINGGIKSLEEA--KAHLQHMDGVMVGREAYQ 238 P + L DF + M ING I + +A H + +M+GR A + Sbjct: 179 ----------PAYWHLPADFEARLGIPMIINGEIWTPADAGRAQHEANCSSIMLGRGAVR 228 Query: 239 NPGILAAVDREIFGSSDTDAD 259 NP + + EI G + +D Sbjct: 229 NPWLAS----EITGRHNQKSD 245 >UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VA23_NOSCE Length = 327 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 23/223 (10%) Query: 31 RLLSRN---TLLYTEMVTTGAIIHGKGDYLA-----YSEEEHPVALQLGGSDPAALAQCA 82 R+L+R + YTEMV I K + L+ ++ + P+ +Q+ G+D + + + Sbjct: 26 RILARRYGADICYTEMVNCDTFIRSKINPLSNRWYTTNKIDRPLIIQICGNDVNKMLKVS 85 Query: 83 KLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIG 142 + + D I++N+GCP + + G +G+ LM + V + V + + + +PVT K RI Sbjct: 86 LILQEYC-DAIDINLGCPQEIARKGNYGSFLMDDLLKVKEIVTVLSNNLKVPVTCKIRIF 144 Query: 143 IDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRD 202 +S E ++ + G C+M +H R GL N + D+ R + + Sbjct: 145 ----ESIEKSVEYAKMIEQAG-CKMLTVHGRTRDQRGL----NTGLASWDHIRAIKASLN 195 Query: 203 FPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGIL 243 P ++ NG I + + +++ DGVMV NP I Sbjct: 196 IPVIS---NGNIINNSDIDNCVEYTKCDGVMVAETHLYNPLIF 235 >UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DS92_ZYGRO Length = 406 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 68/256 (26%), Positives = 109/256 (42%), Gaps = 45/256 (17%) Query: 15 VAPMLDWTDRHCRYFLRLLSRN---TLLYTEMVTTGAIIHG-----------KGDYLAYS 60 VAPM+D ++ R+LSR TL YT M GD S Sbjct: 23 VAPMVDQSE----LAWRILSRKYGATLAYTPMFHAKLFATSPKYRKDMWCEMDGD----S 74 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 + + P+ +Q +DP L Q A+L + + D ++LN+GCP + G +G+ LM LV Sbjct: 75 KIDRPLVVQFCANDPEYLLQAARLVQDKC-DAVDLNLGCPQGIAKKGHYGSFLMEEWDLV 133 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR----KAW 176 ++ + + + +PVT K RI + + S + + TV G + +H R K Sbjct: 134 HKLIRNLHENLDVPVTAKIRIFPEKEKSLQ----YARTVLDAG-AQFLTVHGRLREQKGQ 188 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSI-NGGIKSLEEAKAHLQHM--DGVMVG 233 SGL+ D+ + L+ + P T+ NG + + + + D VM Sbjct: 189 QSGLA----------DWETIKYLRDNLPPDTVFFSNGNLLYPNDISRCMDQINCDAVMSA 238 Query: 234 REAYQNPGILAAVDRE 249 NPGI A D + Sbjct: 239 EGNLYNPGIFNAEDSQ 254 >UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenophonus nasoniae RepID=D2U2K4_9ENTR Length = 458 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 76/317 (23%), Positives = 138/317 (43%), Gaps = 29/317 (9%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY----LAYSEEEHPVALQLG 71 APM TDR R + + +EM+++ + K D + +S+E ++Q+ Sbjct: 44 APMAGITDRPFRSLCYSMGAG-MTVSEMLSSNPQVW-KTDKSRLRMIHSDELGIRSVQIA 101 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 GSDP +A A++ A G I++N+GCP+ +V + G+ L+ +L+ + A+ + V Sbjct: 102 GSDPDEMATAARINVANGAQIIDINMGCPAKKVNRKLAGSALLRYPELIEKILLAVVNAV 161 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK--AWLSGLSPKENREIP 189 +PVT+K R G + E C I ++ + + IH R +G + Sbjct: 162 DVPVTLKVRTGWSPE---ERNCIKIAQLAERCGIQAVTIHGRTRACLFNGAA-------- 210 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAVD 247 +Y + K++ + + NG I +A+A L + D +M+GR A P I + Sbjct: 211 --EYDSIRAAKQNVT-IPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ 267 Query: 248 REIFGSSDTDADPVAVVRAMYPYIEREL----SQGTYLGHITRHMLGLFQGIPGARQWRR 303 + P+A V+ + +EL QG + +H+ + Q+RR Sbjct: 268 HYLETGELLPPMPIAEVQCLMQAHVKELHDFYGQGKGIRIARKHVSWYLREHAPDDQFRR 327 Query: 304 YLSENAHKAGADINVLE 320 + A + VLE Sbjct: 328 TFN-TIEDASEQLEVLE 343 >UniRef50_Q87N01 tRNA-dihydrouridine synthase C n=54 Tax=Gammaproteobacteria RepID=DUSC_VIBPA Length = 322 Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 18/183 (9%) Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 PV +QL G +P +A+ A A G I+LN GCP+ V GA L+ + +L+ V Sbjct: 64 PVHVQLLGQEPHWMAENAIRAAELGARGIDLNFGCPAKMVNKSKGGAALLQHPELIHSVV 123 Query: 125 KAMRDVV--SIPVTVKTRIGIDD-QDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 KA RD V +IPV+ K R+G ++ +D +E ++ + G E+ +HAR G Sbjct: 124 KACRDAVPANIPVSAKIRLGWENPEDCFE----IVDAIQSAGANEL-TVHARTK-QGGYK 177 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQN 239 E + + + +++ F + + NG I + E+ + ++ +D +MV R A+ Sbjct: 178 ASE------IKWEYINKIRERFS-IPLIANGEIWNFEDGQRCIETTGVDSLMVCRGAFNI 230 Query: 240 PGI 242 P + Sbjct: 231 PNL 233 >UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=Proteobacteria RepID=B3PD21_CELJU Length = 321 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 106/245 (43%), Gaps = 28/245 (11%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMV-TTGAIIHGKGDYLAYSEEEH------ 64 R +APM + H R L L TE + T + K Y E E+ Sbjct: 2 RIMLAPMEGVVEHHVRDILTRLGGLDGCVTEFIRVTDQKLPYKVFYKYAQELENHCQTPN 61 Query: 65 --PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 PV +QL GS P +A A+ G I+LN GCP+ V + GACL+ V Sbjct: 62 GTPVKVQLLGSKPEPMALNAQELVRYGAKAIDLNFGCPAKTVNSHEGGACLLRTPDRVYS 121 Query: 123 CVKAMRDVV--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 +KA+RD V +IPV+ K R+G +D+ SY + V G E+ +HAR Sbjct: 122 IIKAVRDAVPRAIPVSAKIRLGFEDRTSY---MENAQAVEAAGADEL-TVHARS------ 171 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEE---AKAHLQHMDGVMVGREAY 237 K + PP + + +K + + NG I S+E+ + Q D VM+GR Sbjct: 172 --KADGYKPPAYWHYIADIKAAL-KIPVIANGEIWSVEDYLRCREQSQCAD-VMLGRGLL 227 Query: 238 QNPGI 242 P + Sbjct: 228 SCPDL 232 >UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Euteleostomi RepID=DUS1L_HUMAN Length = 473 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 46/279 (16%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRN---TLLYTEMVTTGAIIH-----GKGDYLAYSEE 62 R VAPM+D ++ RLLSR L YT M+ + + Y E Sbjct: 17 ARHVVAPMVDQSE----LAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPE 72 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 + P+ +Q +DP Q A LA+ D I+LN+GCP + G +GA L L+ Sbjct: 73 DRPLIVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQR 131 Query: 123 CVKAMRDVVSIPVTVKTRI--GIDDQDSYEFLCDFINTVSGKGECEMFIIHAR----KAW 176 + + +S+PVT K R+ ID Y + + K C++ +H R K Sbjct: 132 MILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLE-------KAGCQLLTVHGRTKEQKGP 184 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGR 234 LSG + E+ + R + + NG I+ L++ + L+ + GVM Sbjct: 185 LSGAASWEH-----------IKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAE 233 Query: 235 EAYQNPGILAAVDREIFGSSDTDAD-------PVAVVRA 266 NP + ++ ++ D P++ VRA Sbjct: 234 GNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRA 272 >UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteobacteria RepID=B8GW86_CAUCN Length = 335 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 114/259 (44%), Gaps = 33/259 (12%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEEE 63 V GR +APM +D R L + TEMV + G+ D + A E Sbjct: 10 VEVPGRVWIAPMTGVSDLPFRETASALG-APYVATEMVASAEFAKGRPDVVRRAAVGEGL 68 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMF-GACLMGNAQLVAD 122 +QL G D +AQ A++A+ G + I+LN GCP+ V G G+ LM L Sbjct: 69 PLTVIQLVGRDVDFMAQGARMAQEAGAEIIDLNFGCPAKEVAAGAACGSALMREPDLAEA 128 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINT--VSGKGE---CEMFIIHA--RKA 175 V A + V +PVTVK R+G D D +N ++ + E + +H R Sbjct: 129 LVAAAVEAVDVPVTVKMRLGWD--------IDCLNAPDIARRAEAAGAKAVTVHGRTRNQ 180 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVG 233 + G++ D+ V +K+ + + +NG I E A+ L+ DGVM+G Sbjct: 181 FYKGVA----------DWTAVAAVKQAV-SVPVLVNGDIVDGETARQALEQSGADGVMIG 229 Query: 234 REAYQNPGILAAVDREIFG 252 R Y P I A++ + G Sbjct: 230 RGVYGRPWIAGAIEAALEG 248 >UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91_ARATH Length = 423 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/251 (22%), Positives = 111/251 (44%), Gaps = 23/251 (9%) Query: 3 EKTDVHWSG----RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGD 55 E+ HW ++ VAPM+D ++ R + YT M+ + + Sbjct: 76 ERAWAHWKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQAA-YTPMLHSRIFTETEKYRNQ 134 Query: 56 YLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMG 115 +E+ P+ +Q +DP L + AK E D +++N+GCP + G +GA LM Sbjct: 135 EFTTCKEDRPLFVQFCANDPDTLLEAAKRVEPYC-DYVDINLGCPQRIARRGNYGAFLMD 193 Query: 116 NAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 N LV V+ + +++PV+ K RI + +D+ + + + G C + +H R Sbjct: 194 NLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLK----YAKMLEDAG-CSLLAVHGRTR 248 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVG 233 K+ ++ D+ + ++K + + NG ++ +E+ ++ ++GV+ Sbjct: 249 -----DEKDGKKF-RADWSAIKEVKNAM-RIPVLANGNVRCIEDVDNCIKETGVEGVLSA 301 Query: 234 REAYQNPGILA 244 +NP A Sbjct: 302 ETLLENPAAFA 312 >UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPY9_9BACT Length = 330 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 40/240 (16%) Query: 23 DRHCRYFLRLLSRNTL---LYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALA 79 D C F+R+ S L ++V +G I P+++Q+ G++ +A Sbjct: 33 DLLCTEFIRISSHKPSMRSLKKQIVKSGDI---------------PLSVQIMGNNAELMA 77 Query: 80 QCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKT 139 + AKL G D +++N+GCP+ R G G+ ++ + +L + +MR+ V ++ K Sbjct: 78 ESAKLVVDCGADAVDVNMGCPTKRAVKGGVGSAMLKDPKLCYQVLASMREQVPCALSAKI 137 Query: 140 RIGIDDQDS-YEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 198 R G D+++ +E L +++ + + +H R+ + E D+ + Sbjct: 138 RAGFDNKEGVFEILQAIVDSGA-----DYLAVHPRRR----VDHYEGHS----DWRIISA 184 Query: 199 LKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAV-----DREIF 251 LK P + + NG +++ +A + DGVM+GR A NP I D+E+F Sbjct: 185 LKEKSP-IPVIGNGDVRTAADAVRMFKETQCDGVMIGRGALSNPWIFLQTSQVLSDQEVF 243 >UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus RepID=Q1J2A4_DEIGD Length = 333 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 117/260 (45%), Gaps = 32/260 (12%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYT--EMVTT-GAIIHGKGDYLAYSEE---EHPVAL 68 +APM ++D R +L + L+T EM++ G ++ G + L E + Sbjct: 19 LAPMAGYSDAPMR---QLAAEQGALWTVSEMISARGLVLGGDSEKLTLGRPYPGEVGRVV 75 Query: 69 QLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 QL G++P LAQ AE+ ++LN+GCP +V+ G GACL+ ++ V+AM Sbjct: 76 QLFGAEPDVLAQAVARAESWFAPAALDLNMGCPVPKVK-GRGGACLLQTPEVAYTLVRAM 134 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 R ++ V+ K R+G D S E I + +H R + R Sbjct: 135 RSATTLDVSAKIRLGWDTDRSVE-----IAQGLAAAGAALITVHGRTS--------VQRY 181 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAYQNPGILAAV 246 D+ + ++ + + +G +KS E+A+A L + VM+GR A NP + A+ Sbjct: 182 SGEADWDAIARVAASV-KVPVVGSGDVKSAEQARARLNTGVAAVMIGRGAVGNPWLFRAL 240 Query: 247 DREIFGSSDTDADPVAVVRA 266 +S D P A RA Sbjct: 241 ------ASGDDVVPSAQERA 254 >UniRef50_Q21L63 Dihydrouridine synthase, DuS n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21L63_SACD2 Length = 318 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 83/302 (27%), Positives = 118/302 (39%), Gaps = 33/302 (10%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMV-TTGAIIHGKGDYLAYSEEEH------ 64 R +APM D H R + + + TE + T ++ K A E + Sbjct: 2 RIFLAPMEGVVDHHMRNIISSVGGVDICVTEFIRVTDHVLPNKIFKKACPELDENSETPA 61 Query: 65 -------PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 PV +QL GS+P+ALA A A G I+LN GCP+ V GACL+ Sbjct: 62 LYRGAHCPVRVQLLGSNPSALAANAARAAELGAVAIDLNFGCPAKTVNRHKGGACLLDET 121 Query: 118 QLVADCVKAMRDVV--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 V D V A+R S PVT K R+G ++DSY I C +HAR Sbjct: 122 DTVFDIVNAVRKATPASTPVTAKIRLGYLNRDSYLRNAKAIEAAGANELC----VHARS- 176 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAK--AHLQHMDGVMVG 233 K + PP + + + RD + + NG I SLE+ K A M+G Sbjct: 177 -------KTDGYQPPAYWHYIGDI-RDNLSIPVVANGEIWSLEDFKRCAEQSKCSDFMLG 228 Query: 234 REAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQ--GTYLGHITRHMLGL 291 R P + + + + G + V + ER YLG+ + L Sbjct: 229 RGLLAKPDLALEIKQYMAGEAFNPLSWDEVCAHVRTLFERNCQSYPPKYLGNRVKQWLFY 288 Query: 292 FQ 293 Q Sbjct: 289 LQ 290 >UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0F5_DESRD Length = 341 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 18/245 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD----YLAYSE 61 D + RF ++PM+ T R L L +TEM + A++ + + + Sbjct: 17 DKSLTNRFLLSPMVGVTHVALRRLLHDFGGFGLHWTEMCSASAVLQEDPRISPVFRFHRD 76 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E + Q+ GS+P +A A+ + G+ +++N+GC V+ GA L+ + A Sbjct: 77 ELATLVCQIMGSEPETMAAAARRIQDEGFFGVDINMGCCVAAVRQQGAGAALLRDISRAA 136 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 V A+R V IP+ VK R G DQ + K + I+H R A Sbjct: 137 AIVDAVRQAVDIPLFVKLRSGWTDQGP---VVVHAARACAKAGADALIVHPRLAPDRRTR 193 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQN 239 P + R+I R D P NG + + ++A A L+ G+ +GR A Sbjct: 194 PPQWRDI------RAVCEAVDLPVFG---NGNVFTADDATAMLRQTGCQGIALGRMAAAR 244 Query: 240 PGILA 244 P I A Sbjct: 245 PWIAA 249 >UniRef50_O74553 tRNA-dihydrouridine synthase 4 n=1 Tax=Schizosaccharomyces pombe RepID=DUS4_SCHPO Length = 326 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 24/244 (9%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS--EEEHPVALQLGGS 73 APM+ ++ R +R + + ++YT M+ +H KG Y +S + + + LQ G Sbjct: 25 APMVRYSKLPFRQLVRDYNTD-IVYTPMILAKEFLHPKGRYFDFSTNDADASLILQFGVD 83 Query: 74 DPAALAQCAKLAEARGYDEINLNVGCPSD-RVQNGMFGACLMGNAQLVADCVKAMRDVV- 131 DP L + A+L D I +N GCP +Q G+ G+ L+ + V V+A++ + Sbjct: 84 DPVILEKAAQLV-GPYVDGIGINCGCPQTWAIQEGI-GSALLDEPEKVHKLVRAVKSTLG 141 Query: 132 -SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 S VK RI D + + V K ++ +H R +++R P Sbjct: 142 ESFCTEVKIRIAKDLNKTRHLM-----QVIEKSGADIITVHGRT--------RQDRSSFP 188 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAK--AHLQHMDGVMVGREAYQNPGILAAVDR 248 ++ + ++ R + + NG +KSL + A G+M R +NP + A + Sbjct: 189 VNLDAIREV-RPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEE 247 Query: 249 EIFG 252 +G Sbjct: 248 TPWG 251 >UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Chordata RepID=DUS3L_MOUSE Length = 637 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 107/253 (42%), Gaps = 19/253 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE 62 EK + SG+ +AP+ + R + + + EM ++ G+ A + Sbjct: 284 EKKRLDISGKLYLAPLTTCGNLPFRRICKRFGAD-VTCGEMAVCTNLLQGQMSEWALLKR 342 Query: 63 EHPV----ALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNA 117 HP +QL G+ P + +CA+L D +++NVGCP D V G LM + Sbjct: 343 -HPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRS 401 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 V+ + V+ +P+TVK R G+ ++ S + + G + +H R Sbjct: 402 AKFQQIVRGVNGVLDVPLTVKMRTGVQERVSLAH--RLLPELRDWG-VALVTLHGRS--- 455 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREA 236 +E R D+P + Q + + + NG I S E+A +Q + G+MV R A Sbjct: 456 -----REQRYTRLADWPYIEQCAKVASPMPLFGNGDILSFEDANCAMQTGVAGIMVARGA 510 Query: 237 YQNPGILAAVDRE 249 P + + + Sbjct: 511 LLKPWLFTEIKEQ 523 >UniRef50_B7FXL2 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FXL2_PHATR Length = 233 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 106/245 (43%), Gaps = 25/245 (10%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMV-----TTGAIIHGKGDYLAYSEEEHPVA 67 + +APM+D +D R R N L +T M+ TT K ++ P+ Sbjct: 1 YVLAPMVDQSDLPFRLLCRSYGTN-LCFTPMIHARLFTTNVEYRRKFTLQYGPPQDRPLI 59 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 Q+ G D A+ CA LA D I++N GCP + + G +GA L+ ++ V + Sbjct: 60 AQICGGDVQAVVACA-LAMQPYCDGIDINCGCPQNIAKRGNYGAFLLEQEDVLLPLVHTL 118 Query: 128 RDVVSIPVTVKTRI--GIDDQDSYEFLCDFINTVSGKGECEMFIIHAR----KAWLSGLS 181 +S+P++VK R+ Q S E + G + IH R K L+G + Sbjct: 119 LQHLSVPLSVKVRLLPAETRQASLEASLRLYTKLVDAG-VHLLTIHGRTRHHKGPLTGAA 177 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQN 239 + + V +L + P + NGG+ SL +A+A L H DGVM + Sbjct: 178 DWDAIRV------VVDRLGQRIP---IFANGGVASLRDAQACLATTHADGVMSSEALLEY 228 Query: 240 PGILA 244 P + A Sbjct: 229 PALFA 233 >UniRef50_B9M3C8 Dihydrouridine synthase DuS n=2 Tax=Desulfuromonadales RepID=B9M3C8_GEOSF Length = 306 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/242 (26%), Positives = 112/242 (46%), Gaps = 31/242 (12%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGA------IIHGKGDYLAYSEEEHPVAL 68 +APM T+R R L R ++TE + A I G +A +E++ P+ + Sbjct: 2 LAPMQGVTNRAMRSLFIELVRPDTVFTEFIRVNAAAPVRRISAGDLKEMAAAEKDVPLVV 61 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 QL G AL A+ A+A G INLN+GCP R+ +G G L+ + +++++ + ++R Sbjct: 62 QLIGHGRDALVSAAEAAQATGAIHINLNMGCPYGRMTSGPTGGGLLRHPEVLSEIIPSLR 121 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW--LSGLSPKENR 186 V+ ++K R G DD + L + + ++H R GL+ Sbjct: 122 RVIKGTFSLKMRAGYDDPEQILRLLPLFEA----AKVDFLVLHPRTVLQQYQGLA----- 172 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD-----GVMVGREAYQNPG 241 D+ ++ R+ + + NG I++ A A LQ ++ G+M+GR A +P Sbjct: 173 -----DHAITARVVRE-TEIPVIANGDIRT---ASAGLQLLEETGAAGLMLGRGAIADPF 223 Query: 242 IL 243 I Sbjct: 224 IF 225 >UniRef50_Q88LF2 tRNA-dihydrouridine synthase C n=38 Tax=cellular organisms RepID=DUSC_PSEPK Length = 323 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 17/182 (9%) Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+ +QL GSDP LA+ A LA G I+LN GCP+ V GA L+ +L+ V Sbjct: 64 PMRVQLLGSDPVCLAENAALACELGAPVIDLNFGCPAKTVNKSRGGAVLLKEPELLHAIV 123 Query: 125 KAMRDVV--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 + +R V +IPVT K R+G D D C T +G ++HAR Sbjct: 124 REVRRAVPANIPVTSKMRLGFDSPDG-ALEC---ATALAEGGSAHLVVHART-------- 171 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAK--AHLQHMDGVMVGREAYQNP 240 K PP + V +++ D + + NG I ++++ + + + +M+GR P Sbjct: 172 KVEGYKPPAHWEWVARVQ-DVVKVPVFANGEIWTVDDWRRCREVSGAEDIMLGRGLVSRP 230 Query: 241 GI 242 + Sbjct: 231 DL 232 >UniRef50_Q9KT00 tRNA-dihydrouridine synthase C n=75 Tax=Gammaproteobacteria RepID=DUSC_VIBCH Length = 323 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 16/182 (8%) Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 PV +QL G DP +A+ A A G I+LN GCP+ V GA L+ + +L+ V Sbjct: 64 PVKVQLLGQDPHWMAENAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQVV 123 Query: 125 KAMRDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 KA RD V IPV+ K R+G +D + C I + + + +HAR G Sbjct: 124 KACRDAVPAHIPVSAKIRLGWEDPED----CFEIVDAVAQAKADELTVHARTK-AGGYKA 178 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNP 240 E + + + Q+++ + + NG + + + +A +Q +D +MV R A P Sbjct: 179 SE------IKWHYIDQIRQKCS-IPLIANGEVWNYADGQACIQTTGVDSLMVCRGALNVP 231 Query: 241 GI 242 + Sbjct: 232 NL 233 >UniRef50_B9XLX7 Dihydrouridine synthase DuS n=3 Tax=Verrucomicrobia RepID=B9XLX7_9BACT Length = 340 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 69/281 (24%), Positives = 113/281 (40%), Gaps = 33/281 (11%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE-------HP 65 ++APM D TD + + YTE +HG + + E P Sbjct: 9 LALAPMQDVTDLPFMKVISSYGSADVYYTEYFR----VHGSSNLEKWILESITKNPTGQP 64 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 V Q+ G+D +L + AK + ++LN+GCP+ V G L+ + V + Sbjct: 65 VIAQMIGNDIPSLVRSAKELQQYPIVAVDLNLGCPAPIVYRKCAGGGLLREPKRVDSILG 124 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+RD +S+ TVKTRIG D ++ L + K ++ +H R + Sbjct: 125 ALRDAISVKFTVKTRIGFDSTGVFDELL----PIFAKHSIDLLTVHGRTVQ------EMY 174 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREAYQNPGIL 243 R D+ P L NG + S ++A+ LQ G+M+GR +NP + Sbjct: 175 RSEVHYDFIARAAQAVSCPVLA---NGNVYSAKKAEEVLQFTGARGLMIGRGVIRNPWLF 231 Query: 244 AAVDREIFGSS---DTDADPVAVVRAMYPYIE----RELSQ 277 + G D + +R +Y + REL+Q Sbjct: 232 HQIRHHRRGEPIFIPKGHDVLQYIRTLYDAVRPPDIRELAQ 272 >UniRef50_Q1QZQ6 Dihydrouridine synthase, DuS n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QZQ6_CHRSD Length = 340 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 72/159 (45%), Gaps = 31/159 (19%) Query: 10 SGRFSVAPM-----------------LDWTDRHCRYFL--RLLSRNTLLYTEMVTTGAII 50 SGR +APM LDWT + RL +R L + + T A Sbjct: 6 SGRIGLAPMEGVIDVVTRELLSADGALDWTVTEFVRVVDTRLPARVFLRHCPELETAACA 65 Query: 51 HGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFG 110 G PV LQL GSDP ALA A A+A G +++LN GCP+ V G Sbjct: 66 TASGT---------PVHLQLLGSDPEALAANAVRAQALGARQVDLNFGCPAKTVNRHDGG 116 Query: 111 ACLMGNAQLVADCVKAMRDVVS---IPVTVKTRIGIDDQ 146 A L+ + V V+A+ + ++ I VT K R+G DD+ Sbjct: 117 ASLLRQPERVHTVVRAVAEALAPLGIAVTAKIRLGFDDK 155 >UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CSA9_CRYPV Length = 409 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 71/310 (22%), Positives = 131/310 (42%), Gaps = 22/310 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPV 66 S + +APM+D ++ R + + L Y+ M +G +G EE+ P+ Sbjct: 18 SPKTVLAPMVDGSELAFRLICKKYGCD-LGYSPMYHSGLFSKLQGYRETNFQTCEEDDPM 76 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q G+DP L + +K + + I++N GCP + + G +GA L+ N L+ + Sbjct: 77 IVQFCGNDPETLVKASKFIDDK-VKGIDINFGCPQNIAKRGNYGAFLLSNPDLMERIIST 135 Query: 127 MRDV-VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG-LSPKE 184 + + + PV+ K RI D + + I + G C M +H R G L+ Sbjct: 136 LSESDLKCPVSCKIRIL--DHHDLQPTINLIKRLESAGAC-MIAVHGRTMTSRGVLTGPA 192 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGI 242 N E ++ + + P + NGGI + E+ + L + D VM +NP + Sbjct: 193 NWEA-----LKILKSRCSIPFIA---NGGISNYEDIQKCLNYTGADAVMSAEGILENPWL 244 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 ++ +A+ Y + + G H+ R +F +PGA +R Sbjct: 245 FQGFKTPEAINNKPSQFQIALEYLDYCILYPPPNVGIIRTHLYRIFHTIF-SLPGAHIFR 303 Query: 303 RYLSENAHKA 312 ++ N+H+ Sbjct: 304 DEIN-NSHQV 312 >UniRef50_P33371 tRNA-dihydrouridine synthase C n=160 Tax=Gammaproteobacteria RepID=DUSC_ECOLI Length = 315 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 65/251 (25%), Positives = 108/251 (43%), Gaps = 32/251 (12%) Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 V +QL G P LA+ A A G ++LN GCPS V GA L+ + +L+ K Sbjct: 65 VRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 Query: 126 AMRDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 AMR+ V +PV+VK R+G DS E + + V G E+ ++H R + + Sbjct: 125 AMREAVPAHLPVSVKVRLG---WDSGEKKFEIADAVQQAGATEL-VVHGR-------TKE 173 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA--HLQHMDGVMVGREAYQNPG 241 + +D+ + +++ ++ + NG I + A+ + D VM+GR A P Sbjct: 174 QGYRAEHIDWQAIGDIRQRL-NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPN 232 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 + V + V + Y +E++ G Y H+ R +QW Sbjct: 233 LSRVVK---YNEPRMPWPEVVALLQKYTRLEKQGDTGLY--HVAR-----------IKQW 276 Query: 302 RRYLSENAHKA 312 YL + +A Sbjct: 277 LSYLRKEYDEA 287 >UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verrucomicrobia RepID=B2ULM0_AKKM8 Length = 334 Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 82/313 (26%), Positives = 133/313 (42%), Gaps = 42/313 (13%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH---PVALQLG 71 +APM TD R + L + ++ TE V+ I+ Y++ E+ P+ +QL Sbjct: 21 LAPMAGVTDPIFRTICKELGVDVMV-TEFVSAEGILQAWERNRRYTKIENAHRPIGIQLF 79 Query: 72 GSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G+D + + A++ + D I++N GCP +V G+ L+ + L+A + Sbjct: 80 GADGNHMGEAARIILDHEKPDFIDINFGCPVPKVVGKNGGSSLLKDLPLLASVAGGVVKA 139 Query: 131 VS--IPVTVKTRIGIDDQDSYEFLC--DFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 V IPVT K RIG D ++ LC D + +G M IH R + + Sbjct: 140 VGERIPVTAKIRIGWD----FQSLCAMDACRLLENEG-ISMITIHGRT--------RSQQ 186 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSI----NGGIKSLEEAKAHLQH---MDGVMVGREAYQN 239 ++ + + R MS+ NG I S +A A+++ + GVM+GR A +N Sbjct: 187 YSGTANWDIIDECAR-----AMSVPVIGNGDI-STPQAVAYVKENTAVSGVMIGRAAMEN 240 Query: 240 PGILAAVDREIF-GSSDTDADPVAVVRAMYPYIERELSQGTYLG--HITRHM----LGLF 292 P I + G+ DP + + L Y H RHM L Sbjct: 241 PWIFGDAKYYLLHGTMPPARDPQEKAALILRHARMALESRHYGDELHTMRHMRSRILAYT 300 Query: 293 QGIPGARQWRRYL 305 +G PGA++ R L Sbjct: 301 KGFPGAKEMRSRL 313 >UniRef50_B5RQ77 Histidine phosphokinase/phophatase, putative n=4 Tax=Borrelia RepID=B5RQ77_BORRA Length = 339 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/250 (22%), Positives = 107/250 (42%), Gaps = 37/250 (14%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNT----LLYTEMVTTGAIIHGKGDYLAY-----SEEEHP 65 +APM D TD R + L+ + +TE ++ +++ + + + E P Sbjct: 22 LAPMEDVTDTVFRNLINLIGNGKDGPDIYFTEFISVKGLLNKSKNSMQHILTKNDELSRP 81 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + Q+ G DP + ++ G+ I+LN+GCP ++ + L+ N L + + Sbjct: 82 LIAQIWGDDPDKFVKAIEILSNLGFWGIDLNMGCPKKKIVKKGVCSALINNKSLAHEIII 141 Query: 126 AMRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSG---KGECEMFIIHARKAWLSG 179 A ++ +P++VKTR G F C + G K +M +H R Sbjct: 142 ASKEACLKYGLPLSVKTRHG--------FFCSEVEDWLGFLLKLGIDMLTVHPRLVI--- 190 Query: 180 LSPKENREIPPLD---YPRVYQLKRDF-PHLTMSINGGIKSLEEAKAHLQH--MDGVMVG 233 N+ P+D + + +L+ P++ + NG + SL +A + +DG+M G Sbjct: 191 -----NQSEGPIDVNVFDELVKLRNKINPYVVIIGNGDVLSLNQAYQMINKYSIDGIMFG 245 Query: 234 REAYQNPGIL 243 R +N + Sbjct: 246 RGILKNLNLF 255 >UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesia bovis RepID=A7AQM0_BABBO Length = 355 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 104/240 (43%), Gaps = 17/240 (7%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPVAL 68 R+ APM++ ++ R R + + L YT M+ + + + S+++ P+ Sbjct: 13 RYVAAPMVNQSELPFRLLCRRYNVD-LTYTPMLHGRIFVENEKYRAVHFQTSDDDRPLIA 71 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ G D + Q A+L + ++LN+GCP ++G +G+ L+ LV V + Sbjct: 72 QVCGDDAGTITQAARLLKGH-VSAVDLNLGCPQAIAKDGHYGSFLLDEPDLVTGIVSRVT 130 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 V I VT K R D+DS + + ++ G C+ +H R G N Sbjct: 131 REVGIAVTCKIRKV--DKDSLQSTLNLCYSLEQSG-CKALTVHGRHRSEKG----TNVGA 183 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAV 246 D R+ + + P + NGGI++ + + L + D VM + P + + + Sbjct: 184 ADWDAIRIIKSRLRIPVIA---NGGIETFADVERCLSYTGADAVMSSESLLERPYLFSGI 240 >UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3129C Length = 333 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 30/236 (12%) Query: 28 YFLRLLSRN---TLLYTEMVTTGAIIHGKGDYLAYSEEEHP----------VALQLGGSD 74 +F+RL ++ L +EMV++ AI +G HP V++QL G+D Sbjct: 31 WFVRLQAKRYGAGLAVSEMVSSHAIHYGNEKTCTELLRVHPDEWRAGAGGPVSIQLFGND 90 Query: 75 PAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIP 134 P + A A G + I+LN+GCP +V GA L+ + L + +A + +P Sbjct: 91 PDIMRSAAARAAETGANLIDLNMGCPVPKVCKTGAGAALVKDPDLAVEIARAAAEGSGLP 150 Query: 135 VTVKTRIGI--DDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLD 192 VTVK R G+ D++ E + G C IH R A +++ P D Sbjct: 151 VTVKLRPGLRPGDRNGIELAYRLVADAGIAGLC----IHPRHA------SQQHSGRP--D 198 Query: 193 YPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAV 246 Y +L + P + + I+GG++S E + + + V++ R + NP + V Sbjct: 199 YELAKRLVEELP-VPVLISGGLRSAELVREVFEFTGAEAVLLARGSLGNPWLFEQV 253 >UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteobacteria RepID=DUSB_PSEPK Length = 337 Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 113/238 (47%), Gaps = 18/238 (7%) Query: 15 VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTG-AIIHGKGDYL--AYSEEEHPVALQLG 71 +APM TD+ R + L ++ +EMV++ ++ + + L + + P ++Q+ Sbjct: 17 LAPMAGVTDQPFRTLCQRLGAG-MVVSEMVSSDMSLWNSRKSSLRRIHEGDPEPRSVQIA 75 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G D +A AK G I++N+GCP+ +V N G+ L+ + LV++ + A+ V Sbjct: 76 GGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGSALLRDEALVSEILHAVVSAV 135 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 +PVT+K R G D + I +G + +H R + + Sbjct: 136 DVPVTLKIRTGWDRANKNGLNVAKIAEQAG---IQALAVHGRT--------RADLYTGEA 184 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILAAVD 247 +Y + +K+ + + NG I S E+A+A L+ +DG+++GR A P I ++ Sbjct: 185 EYDTIGAIKQAV-SIPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRPWIFREIE 241 >UniRef50_A8JDX4 Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8JDX4_CHLRE Length = 364 Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 21/90 (23%) Query: 135 VTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYP 194 V + R+G+D+ DSY L +F+ GLSP +NR +PPL + Sbjct: 74 VGSRCRLGVDECDSYAQLHEFVK---------------------GLSPHQNRTVPPLRHQ 112 Query: 195 RVYQLKRDFPHLTMSINGGIKSLEEAKAHL 224 + L RDFPHL S+NGG+++ +A+A L Sbjct: 113 WAWALARDFPHLQFSLNGGLQTCHDARAAL 142 >UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xenopus RepID=DUS3L_XENLA Length = 640 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 61/252 (24%), Positives = 103/252 (40%), Gaps = 17/252 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE 62 EK + + + +AP+ + R + L + + EM ++ G+ A + Sbjct: 287 EKKTIDFRNKLYLAPLTTCGNLPFRRICKRLGAD-ITCGEMAMCTNLLQGQPSEWALLKR 345 Query: 63 EHP---VALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 H +QL G+ P + +CA+L D +++NVGCP D V G LM Sbjct: 346 HHSEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTN 405 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 VK M V+ +P+TVK R G+ Q+ I + G + +H R Sbjct: 406 KFEQIVKGMNSVLDVPLTVKIRTGV--QEKVNIAHKLIPNLRDWG-VSLVTLHGRS---- 458 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAY 237 +E R ++ + Q + + + NG I S E+A LQ + GVM+ R A Sbjct: 459 ----REQRYTKLANWEYIDQCAKIASPVPLFGNGDIISYEDANRALQTGVAGVMLARGAL 514 Query: 238 QNPGILAAVDRE 249 P + + + Sbjct: 515 FKPWLFTEIKEQ 526 >UniRef50_B9K738 TIM-barrel protein, nifR3 family n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K738_THENN Length = 273 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 36/255 (14%) Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 S EE VA+Q+ GSDP L++ A + + Y I+LN GCP +V G L+ + L Sbjct: 20 SPEEKNVAVQIFGSDPEELSRAADVL-SDEYPWIDLNAGCPVRKVVKKGAGGGLLRDLDL 78 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQD---SYEFLCDFINTVSGKGECEMFIIHARKAW 176 VK +R V TVKTR+G ++ YE L + +G E+F IH R Sbjct: 79 FRAVVKELRKHVKGKFTVKTRLGWNENQISKIYEILVE-------EGVDEVF-IHTRTV- 129 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGR 234 + K D+ + L + P ++G I S E+AK L+ GV+V R Sbjct: 130 AQAFTGK-------ADWKSLSVLDKKIPTF---VSGDIFSPEDAKRALEESGCHGVLVAR 179 Query: 235 EAYQNPGILAAV----DREIFGSSDTDADPVAVVRAMYPYIE---RELSQGTYLGHITRH 287 A P + + +R + TD ++R+ ++ + + + I + Sbjct: 180 GAIGRPWLFKQIKDFLERGKYSEPSTD----EILRSFEMHLSLLVEDKGEEKAIKEIKKF 235 Query: 288 MLGLFQGIPGARQWR 302 + G + + GAR++R Sbjct: 236 VAGYTKNLKGARRFR 250 >UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4EC62_9ACTN Length = 347 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 96/245 (39%), Gaps = 33/245 (13%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69 F +APM TD R R N L Y+EMV+ + + + ++EE + +Q Sbjct: 19 FLMAPMAGVTDPAYRIMCRRRGAN-LAYSEMVSVAGLAYASNKTWRLVLPADEEQQICVQ 77 Query: 70 LGGSDPAALAQCAKLAEARGYDE---INLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 L GS P A E R D I++N+ CP+ +V G+ LM L V+A Sbjct: 78 LFGSKPEQFASAVAAVEERVGDRLSLIDINMACPARKVVTKGEGSALMRTPDLAEKIVEA 137 Query: 127 MRDVVSIPVTVKTRIGI--DDQDSYEFL----CDFINTVSGKGECEMFIIHARKAWLSGL 180 +PVTVK R G +D+++ F V+ G C + + W Sbjct: 138 AVGAAHVPVTVKIRKGFYAEDRNAATFAQMLEGAGAAAVAVHGRCATQLYTGQADWSVVD 197 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQ 238 + EIP + +G + S E+A HLQ V + R Y Sbjct: 198 EVADAVEIPVIG------------------SGDVFSAEDAAEHLQGSGASAVFIARGIYG 239 Query: 239 NPGIL 243 NP + Sbjct: 240 NPWVF 244 >UniRef50_A8Y3E7 Putative uncharacterized protein n=2 Tax=Caenorhabditis briggsae RepID=A8Y3E7_CAEBR Length = 283 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 24/213 (11%) Query: 40 YTEMVTTGAIIHG---KGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLN 96 YT M+ I + L+ E + P+ +Q DP LA+ A++ + ++LN Sbjct: 20 YTPMIYAKNFIESEKCRNSELSVCEGDSPLIVQFATDDPFVLAEAAEMVYSCS-SGVDLN 78 Query: 97 VGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS---IPVTVKTRIGIDDQDSYEFLC 153 GCP V++ FG+ L+ +L+AD V+ R +S V++K R+ E Sbjct: 79 CGCPKHDVRSKGFGSALLSKPELLADMVRQTRARISDENFSVSLKIRVN----KEIEKTV 134 Query: 154 DFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGG 213 D G + +H R +P ++ E P+D + +L + + + NGG Sbjct: 135 DLCRKAESAGVTHL-TVHGR-------TPSQHAE--PIDIEAI-RLVKSAVKVPIIANGG 183 Query: 214 IKSLEEAK--AHLQHMDGVMVGREAYQNPGILA 244 I +L+EA A +DG+M NP + A Sbjct: 184 ITNLQEAMNLAEKTGVDGIMAANGLLDNPALFA 216 >UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8N483_COPC7 Length = 561 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 12/153 (7%) Query: 10 SGRFSVAPMLDWTD----RHCRYFLRLLSRNTLLYTEMVT--TGAIIHGKGDYLAYSEE- 62 S ++ VAPM+D ++ R CR + L ++ +M T +A EE Sbjct: 33 SPKYIVAPMVDQSELAFRRLCRQYGAQLIYTPMINAKMFTDPVNKSYRASAFDIASGEEG 92 Query: 63 ----EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 + P+ +Q +DP L Q AK+ E + D +++N+GCP D + G +G+ L + Sbjct: 93 DMASDRPLIVQFCANDPDQLLQSAKVVE-KYCDAVDINLGCPQDIAKRGRYGSFLQDDWP 151 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEF 151 L+ + + +SIPVT K R+ D + + E+ Sbjct: 152 LIYSMINTLHVNLSIPVTAKFRVFPDVEKTVEY 184 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8CWK7 tRNA-dihydrouridine synthase A n=32 Tax=Gammapro... 431 e-119 UniRef50_Q8EAJ0 tRNA-dihydrouridine synthase A n=121 Tax=Bacteri... 414 e-114 UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteo... 392 e-107 UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales ... 385 e-105 UniRef50_Q88KX0 tRNA-dihydrouridine synthase A n=482 Tax=Bacteri... 379 e-103 UniRef50_D0LY25 TIM-barrel protein, yjbN family n=3 Tax=Bacteria... 368 e-100 UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii Rep... 368 e-100 UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisell... 356 9e-97 UniRef50_B0C3E9 tRNA-dihydrouridine synthase A n=4 Tax=Bacteria ... 355 1e-96 UniRef50_Q2RTX4 Dihydrouridine synthase TIM-barrel protein yjbN ... 349 9e-95 UniRef50_C9RM69 TIM-barrel protein, yjbN family n=1 Tax=Fibrobac... 347 2e-94 UniRef50_A5WG83 TIM-barrel protein, yjbN family n=2 Tax=Moraxell... 346 7e-94 UniRef50_A1AW94 TIM-barrel protein, yjbN family n=2 Tax=Gammapro... 345 1e-93 UniRef50_B6BT49 tRNA-dihydrouridine synthase A n=4 Tax=SAR11 clu... 341 3e-92 UniRef50_A8PLS2 tRNA-dihydrouridine synthase A n=1 Tax=Rickettsi... 335 1e-90 UniRef50_Q04VP3 TRNA-dihydrouridine synthase n=4 Tax=Leptospira ... 333 6e-90 UniRef50_A0EAZ6 Chromosome undetermined scaffold_87, whole genom... 332 1e-89 UniRef50_A5GPV9 TRNA-dihydrouridine synthase A n=25 Tax=cellular... 332 1e-89 UniRef50_Q22A31 TIM-barrel protein, yjbN family n=2 Tax=cellular... 330 4e-89 UniRef50_A9W195 Dihydrouridine synthase DuS n=41 Tax=Bacteria Re... 324 2e-87 UniRef50_D0KZZ8 Dihydrouridine synthase DuS n=1 Tax=Halothiobaci... 323 7e-87 UniRef50_Q87AY2 tRNA-dihydrouridine synthase A n=15 Tax=Bacteria... 320 5e-86 UniRef50_Q5ZVH8 Zinc binding TIM barrel protein, YjbN family n=6... 320 6e-86 UniRef50_A5EXU5 TRNA-dihydrouridine synthase A n=1 Tax=Dicheloba... 319 6e-86 UniRef50_Q5SMC7 tRNA-dihydrouridine synthase n=3 Tax=Thermus Rep... 319 1e-85 UniRef50_A6U9Y2 Dihydrouridine synthase DuS n=3 Tax=Rhizobiaceae... 312 1e-83 UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia... 310 4e-83 UniRef50_D1AMN2 Dihydrouridine synthase DuS n=3 Tax=Bacteria Rep... 310 4e-83 UniRef50_C6XGY7 tRNA-dihydrouridine synthase A n=1 Tax=Candidatu... 310 5e-83 UniRef50_B7J4N8 tRNA-dihydrouridine synthase A n=2 Tax=Acidithio... 308 2e-82 UniRef50_C9MVS9 tRNA dihydrouridine synthase A n=2 Tax=Leptotric... 308 2e-82 UniRef50_C6NVP5 tRNA-dihydrouridine synthase A n=1 Tax=Acidithio... 306 5e-82 UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidami... 304 3e-81 UniRef50_B1XUD8 Dihydrouridine synthase DuS n=2 Tax=Polynucleoba... 303 7e-81 UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacter... 301 2e-80 UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteo... 300 5e-80 UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidami... 297 3e-79 UniRef50_C7NAG3 Dihydrouridine synthase DuS n=1 Tax=Leptotrichia... 296 7e-79 UniRef50_Q0JEG3 Os04g0278900 protein n=3 Tax=Oryza sativa RepID=... 296 8e-79 UniRef50_B6KL93 Dihydrouridine synthase domain-containing protei... 294 3e-78 UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonada... 294 4e-78 UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes... 294 4e-78 UniRef50_Q9FI41 Emb|CAB87804.1 n=16 Tax=Embryophyta RepID=Q9FI41... 294 4e-78 UniRef50_A8MRX7 Uncharacterized protein At3g63510.2 n=5 Tax=Arab... 292 2e-77 UniRef50_C1FGA1 Predicted protein (Fragment) n=4 Tax=Mamiellales... 290 5e-77 UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostri... 289 7e-77 UniRef50_Q4N9T6 TRNA-dihydrouridine synthase A, putative n=2 Tax... 288 1e-76 UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3... 288 2e-76 UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellul... 288 2e-76 UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostri... 288 2e-76 UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=C... 287 3e-76 UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chlorof... 287 4e-76 UniRef50_Q8I2W5 Dihydrouridine synthase, putative n=8 Tax=Plasmo... 286 7e-76 UniRef50_D0NZC8 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 285 1e-75 UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organi... 285 2e-75 UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=A... 283 7e-75 UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria ... 282 8e-75 UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobact... 281 2e-74 UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostri... 281 2e-74 UniRef50_B7XK29 NIFR3-like protein n=1 Tax=Enterocytozoon bieneu... 281 2e-74 UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bactero... 281 3e-74 UniRef50_A7AWB5 Dihydrouridine synthase (Dus) domain containing ... 280 6e-74 UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisell... 279 1e-73 UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family ... 279 1e-73 UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax... 278 2e-73 UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiob... 278 2e-73 UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax... 278 2e-73 UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis... 276 8e-73 UniRef50_Q056Y8 TRNA-dihydrouridine synthase A n=1 Tax=Buchnera ... 275 1e-72 UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachl... 275 2e-72 UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natrana... 274 2e-72 UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bde... 274 3e-72 UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes ... 274 3e-72 UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C... 274 3e-72 UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfa... 274 3e-72 UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ac... 274 4e-72 UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicute... 274 4e-72 UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2... 272 1e-71 UniRef50_B2RZT4 NIFR3-like protein n=23 Tax=Borrelia RepID=B2RZT... 272 2e-71 UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ge... 271 3e-71 UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroide... 269 8e-71 UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteure... 269 9e-71 UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3... 269 9e-71 UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepI... 269 1e-70 UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiale... 268 2e-70 UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogen... 268 2e-70 UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=... 267 3e-70 UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like... 266 7e-70 UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotale... 266 8e-70 UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister i... 265 2e-69 UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase... 264 3e-69 UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=... 263 6e-69 UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacte... 262 9e-69 UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Ta... 262 1e-68 UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xeno... 262 1e-68 UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Stre... 262 1e-68 UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3... 262 1e-68 UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=... 262 2e-68 UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira c... 261 3e-68 UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococ... 261 3e-68 UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenopho... 260 3e-68 UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax... 260 6e-68 UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3... 259 7e-68 UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coe... 259 8e-68 UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Ta... 259 8e-68 UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerof... 259 9e-68 UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes Re... 259 9e-68 UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaprote... 259 1e-67 UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Cho... 259 1e-67 UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaeroc... 259 1e-67 UniRef50_C1E9S0 Predicted protein n=2 Tax=cellular organisms Rep... 259 1e-67 UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinob... 259 1e-67 UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonella... 258 2e-67 UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3... 257 3e-67 UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14... 257 4e-67 UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaeroc... 257 4e-67 UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Ta... 257 4e-67 UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostri... 257 5e-67 UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothi... 257 5e-67 UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa... 257 6e-67 UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Ta... 256 7e-67 UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bi... 256 7e-67 UniRef50_B7GAU2 Predicted protein (Fragment) n=2 Tax=Bacillariop... 256 8e-67 UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia R... 256 9e-67 UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium... 255 2e-66 UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax... 255 2e-66 UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_D... 254 2e-66 UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 254 3e-66 UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verruco... 254 3e-66 UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured mar... 254 3e-66 UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Euka... 254 4e-66 UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Corioba... 254 5e-66 UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verruco... 253 6e-66 UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3... 253 7e-66 UniRef50_C4VAN5 Putative uncharacterized protein n=1 Tax=Nosema ... 252 1e-65 UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga ol... 252 2e-65 UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protei... 251 3e-65 UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured ... 251 3e-65 UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacte... 251 3e-65 UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n... 251 3e-65 UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteob... 250 7e-65 UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium... 249 8e-65 UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 249 1e-64 UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Al... 249 1e-64 UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Pe... 248 2e-64 UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibr... 248 3e-64 UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteoba... 247 5e-64 UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota ... 247 6e-64 UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea Rep... 246 8e-64 UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tet... 246 9e-64 UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium s... 246 1e-63 UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dict... 245 1e-63 UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepI... 245 1e-63 UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-bind... 245 2e-63 UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales ... 245 2e-63 UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria R... 245 2e-63 UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 ... 244 2e-63 UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine... 244 3e-63 UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae Re... 244 4e-63 UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=un... 244 4e-63 UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collins... 243 9e-63 UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteri... 242 9e-63 UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylob... 242 1e-62 UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriace... 242 2e-62 UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3... 241 2e-62 UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3... 241 2e-62 UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalk... 241 3e-62 UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogen... 241 3e-62 UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256... 240 4e-62 UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=A... 240 4e-62 UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mo... 240 5e-62 UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bactero... 239 1e-61 UniRef50_Q8SUY1 Putative uncharacterized protein ECU07_1170 n=1 ... 239 1e-61 UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=... 239 1e-61 UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricale... 239 1e-61 UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobi... 239 1e-61 UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamie... 238 1e-61 UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliang... 238 1e-61 UniRef50_Q9T0J6 tRNA-dihydrouridine synthase 3-like n=10 Tax=Mag... 238 2e-61 UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococca... 237 3e-61 UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 237 3e-61 UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadac... 237 3e-61 UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME 237 4e-61 UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genom... 237 4e-61 UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aq... 237 5e-61 UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agarica... 237 6e-61 UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 237 6e-61 UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera Rep... 237 6e-61 UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=A... 237 6e-61 UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomyco... 236 7e-61 UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=S... 235 1e-60 UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=I... 235 2e-60 UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 235 2e-60 UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovib... 235 2e-60 UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Plancto... 235 2e-60 UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacter... 234 3e-60 UniRef50_C5KTF9 tRNA-dihydrouridine synthase A, putative n=2 Tax... 233 4e-60 UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=... 233 5e-60 UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassif... 233 6e-60 UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobi... 233 8e-60 UniRef50_Q4P1U2 tRNA-dihydrouridine synthase 3 n=4 Tax=Eukaryota... 232 1e-59 UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinom... 232 2e-59 UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter ... 232 2e-59 UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propioni... 231 2e-59 UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 ... 231 3e-59 UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii Re... 231 3e-59 UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacte... 230 5e-59 UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91... 230 6e-59 UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Eut... 230 6e-59 UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 ... 229 1e-58 UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinom... 229 1e-58 UniRef50_A8PTG4 tRNA-dihydrouridine synthase 3 n=1 Tax=Malassezi... 228 3e-58 UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota R... 227 4e-58 UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasid... 227 4e-58 UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ... 226 8e-58 UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira ... 226 1e-57 UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisp... 225 2e-57 UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 225 2e-57 UniRef50_O83945 Probable tRNA-dihydrouridine synthase n=4 Tax=Tr... 223 8e-57 UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfo... 223 8e-57 UniRef50_B7XJM7 tRNA-dihydrouridine synthase 1 n=1 Tax=Enterocyt... 223 9e-57 UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Met... 223 9e-57 UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogace... 222 1e-56 UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 222 1e-56 UniRef50_B8C4H3 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 222 1e-56 UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibri... 222 2e-56 UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseri... 222 2e-56 UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=R... 221 3e-56 UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 220 5e-56 UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candida... 220 5e-56 UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=A... 220 6e-56 UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga l... 220 7e-56 UniRef50_D2VPF2 Predicted protein n=2 Tax=Naegleria gruberi RepI... 220 8e-56 UniRef50_Q9HGN6 tRNA-dihydrouridine synthase 1 n=1 Tax=Schizosac... 219 9e-56 UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylo... 219 1e-55 UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 219 1e-55 UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=D... 219 1e-55 UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synt... 218 2e-55 UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira ... 218 2e-55 UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 ... 218 3e-55 UniRef50_Q5KP54 Putative uncharacterized protein n=1 Tax=Filobas... 217 4e-55 UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibac... 217 5e-55 UniRef50_B2KES4 Dihydrouridine synthase DuS n=1 Tax=Elusimicrobi... 217 5e-55 UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesi... 217 5e-55 UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=L... 217 5e-55 UniRef50_B8BUP5 Predicted protein n=1 Tax=Thalassiosira pseudona... 216 1e-54 UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=E... 216 1e-54 Sequences not found previously or not previously below threshold: UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibac... 242 9e-63 UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia ... 241 3e-62 UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 231 2e-59 >UniRef50_Q8CWK7 tRNA-dihydrouridine synthase A n=32 Tax=Gammaproteobacteria RepID=DUSA_VIBVU Length = 326 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 237/320 (74%), Positives = 273/320 (85%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQ 69 S R SVAPMLDWTDRHCRYF RL+++ TLLYTEM+TTGAIIHGKGD+LAY++EEHPVALQ Sbjct: 4 SCRLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGDFLAYNQEEHPVALQ 63 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 LGGS+P LA CAKLA RGYDE+NLNVGCPSDRVQNG FGACLM QLVADCV AM++ Sbjct: 64 LGGSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKE 123 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 VV IPVTVKTRIGIDDQDSYEFL DF++ VS KG CE F IHARKAWLSGLSPKENREIP Sbjct: 124 VVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIP 183 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDRE 249 PLDYPR YQLK+DF HLT++INGG+KSLEEAK HLQH+DGVM+GREAYQ+P +LA+VD+E Sbjct: 184 PLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQE 243 Query: 250 IFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENA 309 +FGS +V MYPYIE++L+ G YLGH+TRHMLGLFQ +PGARQWRR++SENA Sbjct: 244 LFGSQSPIKKRRQIVEEMYPYIEQQLANGAYLGHMTRHMLGLFQNMPGARQWRRHISENA 303 Query: 310 HKAGADINVLEHALKLVADK 329 HK G+ I VL+ AL + + Sbjct: 304 HKPGSGIEVLQQALAKIPQE 323 >UniRef50_Q8EAJ0 tRNA-dihydrouridine synthase A n=121 Tax=Bacteria RepID=DUSA_SHEON Length = 335 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 228/315 (72%), Positives = 258/315 (81%), Gaps = 1/315 (0%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGG 72 FS+APMLDWTDRH RYF RL+S N LLYTEMVTTGAI+HG+GDYL Y++EEHP+ALQLGG Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQEEHPLALQLGG 75 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 S+P LA+CAKLA RGYDE+NLNVGCPSDRVQNG FGACLM +LVA+CV AM+ VV Sbjct: 76 SNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVD 135 Query: 133 IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLD 192 IPVTVKTRIGID+QDSYEFL FI+TV KG C FIIHARKAWL GLSPKENREIPPLD Sbjct: 136 IPVTVKTRIGIDEQDSYEFLTHFIDTVMAKG-CGEFIIHARKAWLQGLSPKENREIPPLD 194 Query: 193 YPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFG 252 Y RVYQLKRD+P L +SINGGI SLE+A+ HLQH+DGVMVGREAYQNP +LA VD+ + G Sbjct: 195 YDRVYQLKRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYMLAQVDQVLCG 254 Query: 253 SSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKA 312 S+ AV+ AM PYIE L G L HITRHM+GLFQG+PGAR WRRYLSENAHK Sbjct: 255 STKAVMSREAVIEAMLPYIEAHLQVGGRLNHITRHMIGLFQGLPGARAWRRYLSENAHKN 314 Query: 313 GADINVLEHALKLVA 327 GA I V++ A + V Sbjct: 315 GAGIEVVKLAYQSVQ 329 >UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2SJJ8_HAHCH Length = 349 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 193/320 (60%), Positives = 229/320 (71%), Gaps = 2/320 (0%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQL 70 RFSVAPM+DWTDRH RY RLLSR+T LYTEMVTTGAIIHG + +L ++ EEHP+A+QL Sbjct: 19 RFSVAPMMDWTDRHYRYLARLLSRHTYLYTEMVTTGAIIHGDRNRFLDFNAEEHPIAVQL 78 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GGS+P L +CAK+ E GYDEINLNVGCPSDRVQN M GACLMG + VA+CV AM Sbjct: 79 GGSNPDELKECAKICEDWGYDEINLNVGCPSDRVQNNMIGACLMGYPERVAECVAAMCSA 138 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 VSIPVTVK RIGIDDQDS EFL +F+ TV G C FIIHARKA L GLSPKENREIPP Sbjct: 139 VSIPVTVKHRIGIDDQDSEEFLLNFVRTVKAAG-CSTFIIHARKAILKGLSPKENREIPP 197 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L YPR Y +K+ FP L + INGGIK+++E+++HLQ +DGVM+GREAYQ P +LA VD + Sbjct: 198 LIYPRAYLIKQTFPELEIIINGGIKTMDESESHLQEVDGVMIGREAYQRPWMLADVDHRL 257 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAH 310 F + YIER G + H+ RH LGLF G G +Q+RRYLSENA Sbjct: 258 FHCPPPSFSATDIGYQFLEYIERNYQNGVAVWHMARHALGLFHGQKGGKQFRRYLSENAI 317 Query: 311 KAGADINVLEHALKLVADKR 330 K A V AL +V+ + Sbjct: 318 KRTASPTVFRDALDIVSSYK 337 >UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales RepID=B1XI00_SYNP2 Length = 344 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 179/319 (56%), Positives = 219/319 (68%), Gaps = 2/319 (0%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVAL 68 SVAPM+D TDRH RY +R ++R TLLYTEM+TT AIIHG + L + EHP++L Sbjct: 11 PHLLSVAPMMDRTDRHFRYLMRRITRRTLLYTEMITTQAIIHGDRPKLLDFDAAEHPISL 70 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 QLGG +P LA+CAK+ E GYDEINLNVGCPS RVQ G FGACLM +LVADCV AM+ Sbjct: 71 QLGGDNPKELAECAKVGEDWGYDEINLNVGCPSPRVQQGNFGACLMTQPELVADCVAAMQ 130 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 V+IPVTVK RIG+D+QDSY LC FI VS G C+ F +HARKAWL GLSPKENR + Sbjct: 131 GAVNIPVTVKHRIGVDEQDSYADLCRFIEIVSATG-CDRFSVHARKAWLQGLSPKENRTV 189 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDR 248 PPL Y VY+LK+DFPHL + INGGI +LE + HL +D VMVGR AY NP + A VDR Sbjct: 190 PPLRYADVYRLKQDFPHLWIEINGGITTLEHIQTHLTQVDAVMVGRAAYDNPYLFATVDR 249 Query: 249 EIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSEN 308 +I+G + +V M PYIER G L I+RHML LF G PG + W+R+++E Sbjct: 250 DIYGEAIQPKSRHEIVEEMLPYIERATKAGVKLHSISRHMLSLFLGQPGTKAWKRFITEE 309 Query: 309 AHKAGADINVLEHALKLVA 327 ++E AL LV+ Sbjct: 310 GRGTTVGREIIEQALALVS 328 >UniRef50_Q88KX0 tRNA-dihydrouridine synthase A n=482 Tax=Bacteria RepID=DUSA_PSEPK Length = 336 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 193/329 (58%), Positives = 234/329 (71%), Gaps = 2/329 (0%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG-DYLAYS 60 P T S RFSVAPM+DWTDRHCR+FLRLLSR TLLYTEMVTTGA++H +L + Sbjct: 9 PHTTRPEPSRRFSVAPMMDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHD 68 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 EHP+ALQLGGS PA LA CA+LAE GYDE+NLNVGCPSDRVQN M GACLM + LV Sbjct: 69 ASEHPLALQLGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALV 128 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 ADCVKAMRD VS PVTVK RIGI+ +DSY L DF+ V G C F +HAR A L GL Sbjct: 129 ADCVKAMRDAVSTPVTVKHRIGINGRDSYAELSDFVGQVREAG-CRSFTVHARIAILEGL 187 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNP 240 SPKENREIPPL Y QLKRDFP L + +NGGIK+L+E +AHL+ DGVM+GREAY NP Sbjct: 188 SPKENREIPPLRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNP 247 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 +LA VD+++FGS + + PYI + G + H+TRH+LGL QG GAR+ Sbjct: 248 YLLAEVDQQLFGSDAPVVSRSEALAQLRPYIVAHMESGGAMHHVTRHILGLAQGFKGARR 307 Query: 301 WRRYLSENAHKAGADINVLEHALKLVADK 329 +R+ LS + HKA + V + A++L+ + Sbjct: 308 FRQLLSADIHKAAEPLAVFDQAVELLQGR 336 >UniRef50_D0LY25 TIM-barrel protein, yjbN family n=3 Tax=Bacteria RepID=D0LY25_HALO1 Length = 376 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 181/313 (57%), Positives = 217/313 (69%), Gaps = 2/313 (0%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQLG 71 SVAPM++ TDRH RYFLR +SR+TLLYTEM+ TG IIHG + YL +SE EHP+ALQLG Sbjct: 42 LSVAPMMECTDRHFRYFLRQISRHTLLYTEMIVTGTIIHGDRPRYLDFSEAEHPIALQLG 101 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G D ALA CA++AE GYDE+NLNVGCPS RV +G FGACLM ++VA V+AMR V Sbjct: 102 GDDAEALATCARIAEDWGYDEVNLNVGCPSSRVSSGSFGACLMARPEVVARAVEAMRAAV 161 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 +IPVTVK RIGIDD+D YE + +F+ V+ G + F +HARKAWLSGLSPKENRE+PPL Sbjct: 162 AIPVTVKHRIGIDDRDRYEDMREFVRVVAEAG-ADRFSVHARKAWLSGLSPKENREVPPL 220 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 251 Y V++LKR+FPHL + INGGI L+ A+ L H+D VM+GR AY P I A D F Sbjct: 221 RYADVHRLKREFPHLPIEINGGIVDLDSAQEQLAHVDAVMIGRAAYNTPWIFAEADARFF 280 Query: 252 GSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHK 311 GS AVV AM Y+E + +G L ITRHM LF G GAR WRRYL+E A Sbjct: 281 GSVAPTPTQTAVVEAMIDYVEAQRGRGVPLHRITRHMFQLFAGQRGARGWRRYLTEQAKS 340 Query: 312 AGADINVLEHALK 324 A VL AL Sbjct: 341 RDAGPEVLRVALD 353 >UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii RepID=A9KG09_COXBN Length = 353 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 185/331 (55%), Positives = 230/331 (69%), Gaps = 11/331 (3%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEH 64 + + R S+APM+ TDRH R F+R +SR+ LLYTEMVTTGA++ GK L YS EEH Sbjct: 24 RLMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEH 83 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+ALQ+GGSDP +LA CA+LAE +G+DEINLNVGCPS RV G FGACL+ A+LVADCV Sbjct: 84 PLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVTAGRFGACLLKEAELVADCV 143 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 AM V+IPV+VKTR G+DDQDSYE L F+ TV+ G C +FIIHARKAWL GLSP E Sbjct: 144 AAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAG-CRIFIIHARKAWLKGLSPAE 202 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILA 244 NR +PPL YP VYQLK+DFP L + INGGIK++E HL+ +DGVM+GREAY NP A Sbjct: 203 NRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCA 262 Query: 245 AVDREIFG--------SSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 A D T P V+ PY+ ++L+ G L +TRH+ GLFQG P Sbjct: 263 AFDDLSKPVFSLGVADKKQTPLTPKRVLLRYLPYMAKQLANGVPLYAMTRHLNGLFQGQP 322 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVA 327 GA++WRR+L EN + G I +E AL+L + Sbjct: 323 GAKKWRRFLHENTRREGP-IAAIEEALRLAS 352 >UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisella RepID=A7NDQ7_FRATF Length = 327 Score = 356 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 159/321 (49%), Positives = 217/321 (67%), Gaps = 4/321 (1%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL-AYSEEEHPVALQL 70 + +APMLDWTDRH RY +RL++R+T+LYTEMVT AI+HG ++L Y+ +E+PV LQL Sbjct: 7 KICIAPMLDWTDRHYRYMMRLITRHTMLYTEMVTLNAILHGNKEFLLKYNPQENPVTLQL 66 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG P C KLAE Y+EIN+NVGCPS+RV+ G FG LM +LVADCVKAM+D Sbjct: 67 GGCVPKDFISCGKLAEELDYNEININVGCPSERVKKGNFGLSLMAEPELVADCVKAMKDN 126 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 ++IP++VK RIG D DSYE L +F++ G + IHARK WLSGLSPKENR IP Sbjct: 127 LNIPISVKCRIGYDHNDSYEELYNFVDKQVQAG-IDYLCIHARKGWLSGLSPKENRTIPE 185 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L Y VY +K+DFP+L + INGGI +++E + HL+++D VM+GREAY NP + D Sbjct: 186 LKYDVVYSIKKDFPNLELGINGGITTIQEIQQHLKYVDSVMIGREAYHNPMLFKDFDNIF 245 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSEN 308 + T+ + + M YI+ ++ Y L +IT+H L LF G+P A+ +RRYLSEN Sbjct: 246 YNQPTTNISALEIAYKMAEYIKDQMDNDPYIKLNNITKHTLNLFNGLPNAKVYRRYLSEN 305 Query: 309 AHKAGADINVLEHALKLVADK 329 A K A+++ AL++ +K Sbjct: 306 ATKKEANVDTFLTALEVFENK 326 >UniRef50_B0C3E9 tRNA-dihydrouridine synthase A n=4 Tax=Bacteria RepID=B0C3E9_ACAM1 Length = 335 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 162/316 (51%), Positives = 209/316 (66%), Gaps = 3/316 (0%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQLG 71 SVAPM+D TDRH RYF+R +++ TLLYTEMVT+ AI++G + L +S E P+ LQ+G Sbjct: 13 VSVAPMMDRTDRHFRYFMRQITQRTLLYTEMVTSAAILNGDRHHLLDFSPIEKPLVLQVG 72 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G +P LA+CA++A GYDEINLNVGCPS RVQNG FGACLM VA CV+AM Sbjct: 73 GDNPQDLAECARIATDWGYDEINLNVGCPSSRVQNGHFGACLMAQPDRVAACVEAMMQAT 132 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 +PV+VK RIGIDD D YE + F+ TV+ G C++F +HARKAWL GLSPKENR+IPPL Sbjct: 133 HLPVSVKHRIGIDDCDRYEDMAHFVQTVAASG-CQIFSVHARKAWLKGLSPKENRDIPPL 191 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 251 Y VY+LK++F HL + INGG L + L +D VM+GR AY NP + A VDR+ + Sbjct: 192 RYEDVYRLKQNFSHLWIEINGGFIQLFQVHNQLPKVDAVMIGRAAYDNPYLFATVDRDFY 251 Query: 252 GSSDTDADPVAVVRAMYPYIERELSQGTYLGH-ITRHMLGLFQGIPGARQWRRYLSENAH 310 + V +AM Y+E +G H ITRHML LF G PG+R W+R L+E Sbjct: 252 HEDRSAPSRHKVAQAMMDYLEEWKIKGLLKPHSITRHMLQLFSGQPGSRAWKRLLTEQGC 311 Query: 311 KAGADINVLEHALKLV 326 + A +++ AL V Sbjct: 312 RPDAGPDIIHQALDKV 327 >UniRef50_Q2RTX4 Dihydrouridine synthase TIM-barrel protein yjbN n=3 Tax=Bacteria RepID=Q2RTX4_RHORT Length = 349 Score = 349 bits (895), Expect = 9e-95, Method: Composition-based stats. Identities = 165/334 (49%), Positives = 220/334 (65%), Gaps = 11/334 (3%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG-DYLAYS 60 P+++ R SVAPM+DWTDRH R+FLR +++ TLLYTEM+T A++H +L + Sbjct: 12 PDRSQPD--RRLSVAPMMDWTDRHDRWFLRQITKRTLLYTEMITAQALLHADPGRFLDHH 69 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 +EHP+ALQLGGSDP ALA+ +LA G+ EINLNVGCPSDRV +G FGACLM + LV Sbjct: 70 PDEHPLALQLGGSDPRALAEATRLAAPFGFAEINLNVGCPSDRVSSGRFGACLMADPALV 129 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 A+C+ AM + + PVT+K RIGIDD DSY+ L F++ V+ + I+HARKAWL GL Sbjct: 130 AECLSAMAEASNAPVTIKHRIGIDDLDSYDQLVGFVDQVA-RSGIATIIVHARKAWLKGL 188 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL-------QHMDGVMVG 233 SPKENREIPPL + V++LK DFP L + +NGGI +L +A HL +DGVM+G Sbjct: 189 SPKENREIPPLRHDVVHRLKADFPGLEVILNGGITTLTQALDHLGSGDPAAPAVDGVMIG 248 Query: 234 REAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 R AY+ P +LA D IFG + V A+ PY++ ++G + +TRH+LGLF Sbjct: 249 RAAYETPYMLAQADGLIFGEATPAPSRHEVALALLPYLDAMTARGEPVKRLTRHILGLFH 308 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALKLVA 327 G PGAR +RR+L E + A VL AL + Sbjct: 309 GQPGARAYRRHLGEAGVRPDATAQVLIDALAHIP 342 >UniRef50_C9RM69 TIM-barrel protein, yjbN family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RM69_FIBSS Length = 345 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 173/344 (50%), Positives = 233/344 (67%), Gaps = 20/344 (5%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD--YLAYSEEE 63 ++ ++ R S+APMLD TDRH RYFLRLLS++ LLY+EMV + ++H + +L + E Sbjct: 2 NIDFNRRLSIAPMLDCTDRHERYFLRLLSKHILLYSEMVVSTGLLHCENKDLFLGHEPFE 61 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 HP LQLGGS+PA LA +KL EA G+ E+NLN GCPSDRVQNG FGACLM +VADC Sbjct: 62 HPAVLQLGGSNPADLASASKLVEAAGFSEVNLNCGCPSDRVQNGNFGACLMKEKNVVADC 121 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 KAM+D VSIPV++K RIG+DD DS+EF DFI TV G C++FI+HARKAWL GLSPK Sbjct: 122 FKAMQDAVSIPVSIKCRIGVDDLDSWEFFTDFIQTVRDAG-CKIFIVHARKAWLKGLSPK 180 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGIL 243 ENRE+PPL Y V++LK + P L +SINGGIK+L++ + L+ +DGVMVGREAY+NP L Sbjct: 181 ENREVPPLHYEFVHRLKAEMPELNLSINGGIKTLDQIEEQLKDLDGVMVGREAYENPWFL 240 Query: 244 AAVDREIFG--------------SSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHML 289 D IFG + A A++ A PY+E++ ++G + +H+ Sbjct: 241 HDADARIFGDVRPESNDPAEIIAGNARPATRKALLEAYLPYVEKQTAEGCPATILVKHLY 300 Query: 290 GLFQGIPGARQWRRYLSENAHKA---GADINVLEHALKLVADKR 330 GLF G+PGAR++R LS + +A G ++ A++LV + R Sbjct: 301 GLFAGLPGARKFRATLSNESPRAHLYGGAAALIRKAMELVGETR 344 >UniRef50_A5WG83 TIM-barrel protein, yjbN family n=2 Tax=Moraxellaceae RepID=A5WG83_PSYWF Length = 348 Score = 346 bits (888), Expect = 7e-94, Method: Composition-based stats. Identities = 165/329 (50%), Positives = 219/329 (66%), Gaps = 13/329 (3%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSE 61 D+ + R SVAPM+DWT R+F RL + +T LYTEM++T AI+ GK L Y Sbjct: 13 HSADLMHNKRLSVAPMIDWTTTDYRFFARLFNPHTYLYTEMISTSAILQGKTDRLLRYDT 72 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 EHP+ LQLGG+D + + QCA A+ RG++E+N+NVGCPSDRVQ+ GACLM VA Sbjct: 73 LEHPLVLQLGGADISEMTQCAVEAQKRGFNEVNINVGCPSDRVQHNKIGACLMAEPDTVA 132 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 V+ M+ V IPVTVK RIGID+ DSYEF+ DF++ + G C+ FI+HAR AWL+GLS Sbjct: 133 ALVRNMQAHVDIPVTVKHRIGIDEHDSYEFMQDFVSASAEAG-CQRFIVHARIAWLNGLS 191 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPG 241 PKENREIPPL Y VY+LK+ FP L + INGGI S+E+ KAHLQ +DGVM+GR AY NP Sbjct: 192 PKENREIPPLRYEDVYRLKQAFPELHIEINGGIDSIEQIKAHLQQVDGVMIGRAAYHNPY 251 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 ILA F + ++ +YPY+E+++++G L + RH LGLFQG+PGAR+W Sbjct: 252 ILAE--AMSFWG-EAAPSRAQILTKLYPYLEQQVAKGEPLPSLARHFLGLFQGLPGARKW 308 Query: 302 RRYLS--------ENAHKAGADINVLEHA 322 R+ LS + A A + ++E A Sbjct: 309 RQALSGKQQMSVDDIRRAADATLAIIERA 337 >UniRef50_A1AW94 TIM-barrel protein, yjbN family n=2 Tax=Gammaproteobacteria RepID=A1AW94_RUTMC Length = 322 Score = 345 bits (885), Expect = 1e-93, Method: Composition-based stats. Identities = 153/301 (50%), Positives = 211/301 (70%), Gaps = 2/301 (0%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG-DYLAYSEEEHP 65 +++ +FSVAPM+DWTDRHCRYF RL+S+N L+TEMVT AI++G L ++ EHP Sbjct: 1 MNYHSKFSVAPMMDWTDRHCRYFYRLISKNVQLWTEMVTARAILYGNKNRLLDFNVCEHP 60 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + LQLGGS+P +AQ AK+A+ GY+EIN+NVGCPS+RVQ+ FG CLM Q+VA CV Sbjct: 61 LVLQLGGSEPKEMAQAAKIAQDWGYNEININVGCPSNRVQSSNFGVCLMQTPQVVAQCVD 120 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 AMR +V +P+TVK+RIG+D+ DSY+ L +F+ TV G C+ +IHARKAWL GLSPKEN Sbjct: 121 AMRQMVDVPITVKSRIGVDNMDSYDELVNFVATVESSG-CDNLVIHARKAWLKGLSPKEN 179 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAA 245 R +P L+Y RVYQ+KRDFPHL + INGGI +E + HL+H+D VM+GR Y P +L Sbjct: 180 RSVPKLNYERVYQIKRDFPHLAIGINGGIMDMESSLQHLEHVDSVMLGRAVYHQPYLLRK 239 Query: 246 VDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL 305 VD I+ + V+ A Y++ + + + +TRH+ GL+ G A++++R L Sbjct: 240 VDGLIYQKKSSILSREQVLLAFIEYMKVQHANSVLIRSMTRHIFGLYHGQKNAKKFKRLL 299 Query: 306 S 306 S Sbjct: 300 S 300 >UniRef50_B6BT49 tRNA-dihydrouridine synthase A n=4 Tax=SAR11 cluster RepID=B6BT49_9RICK Length = 334 Score = 341 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 153/325 (47%), Positives = 218/325 (67%), Gaps = 3/325 (0%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEE 63 T+ S + SVAPM+D TDRH R+FLRL+S+N +LY+EMV T + IHG + L+YS EE Sbjct: 3 TNNKISRKISVAPMMDCTDRHDRFFLRLMSKNVMLYSEMVATKSAIHGDRKKILSYSPEE 62 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P+ALQ+GGS+ LA+ AK+AE GYDEIN+N+GCPS +VQ MFGACLM LVA+C Sbjct: 63 KPLALQVGGSNKDELAEVAKIAEDMGYDEININLGCPSKKVQKNMFGACLMKEPDLVAEC 122 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + +M + +IPVT KTRIG D + +++L +FI+ + G + FI+HARKA L+GLSPK Sbjct: 123 INSMVNSCNIPVTAKTRIGFDQTEDFDYLNNFIHKMRDAG-TKTFILHARKAMLTGLSPK 181 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGIL 243 +N IP L+Y VY++K+ P L + INGGI + E HL+ DGVM+GR YQNP L Sbjct: 182 QNLNIPKLNYNMVYEIKKKNPELEIIINGGISKVSEIDNHLKFCDGVMIGRSIYQNPYSL 241 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 ++R+IF + + + VV + Y ++E+ GT + HI RH +GL+ G G++ W+R Sbjct: 242 IEIERDIFNTHN-NPTREQVVEKLLEYADKEVKLGTKINHIMRHTVGLYHGQTGSKDWKR 300 Query: 304 YLSENAHKAGADINVLEHALKLVAD 328 YLS+N +D +H + +V + Sbjct: 301 YLSDNLMARESDFQKTKHIMTIVQN 325 >UniRef50_A8PLS2 tRNA-dihydrouridine synthase A n=1 Tax=Rickettsiella grylli RepID=A8PLS2_9COXI Length = 330 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 154/331 (46%), Positives = 209/331 (63%), Gaps = 7/331 (2%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG--KGDYLAY 59 P+K H VAPML WT RH YF RL+ + LYTEM T AI+ + L Sbjct: 4 PQKKHAHS---LMVAPMLGWTTRHYHYFFRLICKKAQLYTEMFTAQAILKSPARERLLTV 60 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 E +A+QLGG + L++ AK+ E+ GY EINLNVGCPS++VQ+G FG L+ Sbjct: 61 DANEKALAIQLGGGIASDLSKAAKIVESYGYSEINLNVGCPSEKVQSGGFGVVLLKEPNR 120 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 VAD + AM+ VV +PVTVKTRIG+D+ +SY++L FI VS G C+ FIIHARKAWL G Sbjct: 121 VADAIAAMKAVVRLPVTVKTRIGVDNDESYDYLASFIRQVSLAG-CDTFIIHARKAWLHG 179 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQN 239 +SPKENREIPPL+YP VYQ+KRDFPHLT+ +NGGI L+ A LQH+D VM+GR A+ N Sbjct: 180 VSPKENREIPPLNYPWVYQIKRDFPHLTIVLNGGITCLKRAYQQLQHVDAVMIGRAAWYN 239 Query: 240 PGILAAVDREIFGSSD-TDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 P + A +D I +++ PY+E+ L G L H+ + +LGLF G+ G Sbjct: 240 PYLFAQLDALISPQDRFIVPHRFSIILQYLPYLEKALKSGENLAHLIQPLLGLFHGVVGT 299 Query: 299 RQWRRYLSENAHKAGADINVLEHALKLVADK 329 +QWR+ LSE + + + + E + ++ + Sbjct: 300 KQWRQTLSELLQRRYSFVKIKETLQEFISRR 330 >UniRef50_Q04VP3 TRNA-dihydrouridine synthase n=4 Tax=Leptospira RepID=Q04VP3_LEPBJ Length = 339 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 158/330 (47%), Positives = 209/330 (63%), Gaps = 6/330 (1%) Query: 5 TDVHWSGRF--SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSE 61 + R+ S+APM+D TDRH RYFLRL+S++T LYTEM+ TGAI+HG + +L+YS Sbjct: 4 KGIKIPKRYPVSLAPMMDRTDRHFRYFLRLISKHTFLYTEMIHTGAILHGDRRRFLSYSP 63 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 EE P+A+QLGG +P ALA+ +K+ E GY EINLNVGCPSDRV+ G FGACLM + VA Sbjct: 64 EELPLAIQLGGDNPKALAESSKIGEDYGYSEINLNVGCPSDRVREGNFGACLMETPERVA 123 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 + V AM VSIPVTVK RIGI +++ E LC FI V G FI+HAR A L GLS Sbjct: 124 ELVCAMDGNVSIPVTVKCRIGISGKETLEDLCRFIECVRQAG-VRRFIVHARIAILGGLS 182 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPG 241 P +NR+IPPL Y V LK++FP L + INGGI++L E + L+ DGVM+GR AY+ P Sbjct: 183 PAQNRQIPPLRYAHVESLKKEFPDLLIEINGGIRTLAEMQDRLKTNDGVMIGRAAYETPY 242 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIEREL--SQGTYLGHITRHMLGLFQGIPGAR 299 + + VD F + V+ M YIE + + H RHMLGLF G GAR Sbjct: 243 LFSEVDSLFFHDNSPSLSRREVLLRMRDYIEEVVLKEKNGKPHHALRHMLGLFHGEKGAR 302 Query: 300 QWRRYLSENAHKAGADINVLEHALKLVADK 329 +RR ++E + + +L+ ++ D Sbjct: 303 SFRRVVTERMYYDYSSDLLLDAIQEIPNDT 332 >UniRef50_A0EAZ6 Chromosome undetermined scaffold_87, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0EAZ6_PARTE Length = 346 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 139/325 (42%), Positives = 206/325 (63%), Gaps = 11/325 (3%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI-----IHGKGDYLAYSEEE 63 + + S+APM+D T H R F RLL++N +LYTEM+ AI + L YS+ E Sbjct: 5 FRHKISIAPMIDITYEHFRVFFRLLTKNCVLYTEMIHENAINLSRVLKPFPLVLDYSQVE 64 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 HPV QLGG+DP LA+ A++AE G+DEINLNVGCPS+RVQ+G FGACLM LVA C Sbjct: 65 HPVVCQLGGNDPEKLAKAAQIAEQAGFDEINLNVGCPSERVQDGAFGACLMKEPHLVAQC 124 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 +K M++ V IP T+K R+G+D+ DSYEF+ +F+ V +GE FI+HARKA+L GL+P Sbjct: 125 MKKMKEAVKIPCTLKCRLGVDNLDSYEFVRNFVEIVYKEGEVNHFIMHARKAFLKGLNPH 184 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGIL 243 ENR +PPL Y VYQLK++FP + ++NGGIK E L ++DG+M+GR A++NP + Sbjct: 185 ENRTVPPLKYDWVYQLKKEFPEIKFTLNGGIKCTEHIDQVLPNVDGIMIGRSAHENPWMF 244 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLG--HITRHMLGLFQGIPGARQW 301 + DR +G + + + ++ ++E + + G + + ++ LF G +++ Sbjct: 245 SDFDRLYYGGENQNYNRKEILEQYAEFVEEKRATGCKVSTQMCVKPIINLFNGESNNKRY 304 Query: 302 RRYL-SENAHKAGAD---INVLEHA 322 R++L + + HK G V+EH Sbjct: 305 RQFLSNTDNHKLGFRGMINQVIEHM 329 >UniRef50_A5GPV9 TRNA-dihydrouridine synthase A n=25 Tax=cellular organisms RepID=A5GPV9_SYNR3 Length = 335 Score = 332 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 168/328 (51%), Positives = 218/328 (66%), Gaps = 3/328 (0%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-YLAYSEE 62 H + RFSVAPM+D+TDRH R +R +SR+ LLYTEMV A+ HG+ D L + Sbjct: 7 SPQPHPAYRFSVAPMMDYTDRHFRVVMRQVSRHALLYTEMVVAQALHHGRQDTLLGFDPL 66 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 E P+ALQLGG DPA LA+ A+LAE GYDEINLNVGCPS +V+ G FGACLM Q VA Sbjct: 67 EKPIALQLGGDDPALLAEAAELAERWGYDEINLNVGCPSPKVKKGRFGACLMAEPQQVAR 126 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 CV+AM +PVTVK RIGID++DSY+ L DF++TV+ G C+ F +HARKAWL GL P Sbjct: 127 CVEAMGAACRLPVTVKHRIGIDERDSYDELLDFVDTVAAAG-CQRFAVHARKAWLEGLDP 185 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGI 242 K+NR +PPL Y V+ LKRD P L + +NGG++SL + L +DGVMVGR AY +P Sbjct: 186 KQNRTVPPLRYDLVHALKRDRPALIVELNGGLESLSACQEQLHAVDGVMVGRAAYAHPLQ 245 Query: 243 LAAVDREIFGSSD-TDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 VD+EIFG S+ T V++ + P+ E S G L I RH++ L +G+ GAR W Sbjct: 246 WNRVDQEIFGDSNATPIKASEVLQGVLPHAEHWCSSGGRLWPIARHLVHLVEGVSGARYW 305 Query: 302 RRYLSENAHKAGADINVLEHALKLVADK 329 RR LS A A +VLE A++ + ++ Sbjct: 306 RRQLSVEASDRSARPDVLERAMRQLQER 333 >UniRef50_Q22A31 TIM-barrel protein, yjbN family n=2 Tax=cellular organisms RepID=Q22A31_TETTH Length = 466 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 136/306 (44%), Positives = 203/306 (66%), Gaps = 8/306 (2%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEEHPVALQ 69 +VAPM+D TD H R F+RLL+R ++LYTEM+ A+ H G ++L + +HPV +Q Sbjct: 90 IAVAPMIDITDVHFRNFIRLLTRYSILYTEMIHEQAVHHNIRGPQEFLRFDPVQHPVVIQ 149 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 LGG+DP LA+ AK+ E GYDE+NLNVGCPSDRVQ+G FGACLM +LVA+ ++ M++ Sbjct: 150 LGGNDPDNLAKAAKICEEIGYDEVNLNVGCPSDRVQSGKFGACLMKEPELVAEIMRKMKE 209 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 SIPVTVK R+G+D+ DSYEF DFI TVS KG+ + F++HARKA+L GL+P +NR +P Sbjct: 210 ACSIPVTVKCRLGVDNFDSYEFARDFIKTVSEKGQVQHFVVHARKAFLKGLNPAQNRNVP 269 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGV---MVGREAYQNPGILAAV 246 PL Y V +LK++FPHL SINGG K+ ++ L+ +G+ M+GR AY+ P + + + Sbjct: 270 PLKYDYVLRLKQEFPHLHFSINGGFKTYDQISDILKQENGLHGCMLGRAAYETPWLFSDM 329 Query: 247 DREIFGSSDTDADPVAVVRAMYPYIERELSQ--GTYLGHITRHMLGLFQGIPGARQWRRY 304 DR FG + +++ Y + + Q + + + ++ LF G + ++R + Sbjct: 330 DRRYFGKQNPGFSRREILQIWGQYGKLVIQQQPAISIPTLNKPIINLFAGEKHSAKYRHF 389 Query: 305 LSENAH 310 +S+ A+ Sbjct: 390 ISDRAN 395 >UniRef50_A9W195 Dihydrouridine synthase DuS n=41 Tax=Bacteria RepID=A9W195_METEP Length = 354 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 167/329 (50%), Positives = 210/329 (63%), Gaps = 2/329 (0%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSE 61 EK + RFSVAPM+DWTDR CR F R LSR LYTEMVTTGA++HG + L + Sbjct: 20 EKLNELSGWRFSVAPMMDWTDRQCRAFHRTLSRRARLYTEMVTTGAVLHGDRERLLGFDA 79 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E P+A+QLGGS+P LA A++A GY EINLNVGCPSDRVQ+G FGACLM LV Sbjct: 80 YEQPLAVQLGGSNPDDLAAAARIAADFGYAEINLNVGCPSDRVQDGRFGACLMREPGLVG 139 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 CV A++ V +PVTVK R+G+DDQD E D + + ++HARKAWL GLS Sbjct: 140 ACVAALKAAVPVPVTVKCRLGVDDQD-IEEALDAVADAVVAAGGDGLVVHARKAWLKGLS 198 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPG 241 P+ENR++PPLDY RV +LKR P L +++NGGI + AKA L +DGVM+GR AY P Sbjct: 199 PRENRDVPPLDYGRVARLKRAHPDLPIAVNGGIADIAAAKARLGEVDGVMIGRAAYTEPA 258 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 +L VD E+FG AD A + A P + L +G L TRHMLGLF G PGAR + Sbjct: 259 LLLDVDAELFGEPAPVADAFAAIEAFEPIVAAGLERGLRLHAYTRHMLGLFNGRPGARAY 318 Query: 302 RRYLSENAHKAGADINVLEHALKLVADKR 330 RR+L+ A + L A+ V+ +R Sbjct: 319 RRHLATAGMGPEAGLATLREAVAKVSRER 347 >UniRef50_D0KZZ8 Dihydrouridine synthase DuS n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZZ8_HALNC Length = 357 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 170/321 (52%), Positives = 221/321 (68%), Gaps = 2/321 (0%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHPVAL 68 S F +APMLDWTD H R RL++RN LYTEMVTTGA++HG +L+++ EHPVAL Sbjct: 8 SWHFCIAPMLDWTDTHYRVLARLMTRNARLYTEMVTTGALLHGDVSRHLSFNAAEHPVAL 67 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 QLGGSDP+ LA A L GYDEINLNVGCPSDRVQNG FGACLM ++VA V+AM+ Sbjct: 68 QLGGSDPSDLAAAAVLGAEWGYDEINLNVGCPSDRVQNGSFGACLMATPEVVAKGVRAMQ 127 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 V +PVT+KTR+GID DS+E FI+ V+G+G CE+FIIHARKAWL GLSPKENREI Sbjct: 128 ASVDVPVTLKTRVGIDRSDSFEAFARFIDIVAGQGGCEVFIIHARKAWLDGLSPKENREI 187 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM-DGVMVGREAYQNPGILAAVD 247 PPL VY+++ +P LT +NG ++++ E +A L + G+MVGR AYQ+ L VD Sbjct: 188 PPLRRDFVYRIQDAYPELTFVLNGKLETIPEMQAELARVPGGIMVGRAAYQHVDWLRFVD 247 Query: 248 REIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 + +F S AVV+ Y+ + L GT + + + +L LF G+PGAR +RR+LSE Sbjct: 248 QMLFDHSAPIPTRSAVVQGYRAYMLQALESGTPMPPLLKPLLTLFNGLPGARAFRRHLSE 307 Query: 308 NAHKAGADINVLEHALKLVAD 328 + DI+VL+ AL L+ D Sbjct: 308 QGPRRKTDIHVLDEALDLIPD 328 >UniRef50_Q87AY2 tRNA-dihydrouridine synthase A n=15 Tax=Bacteria RepID=DUSA_XYLFT Length = 332 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 165/327 (50%), Positives = 214/327 (65%), Gaps = 3/327 (0%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYS 60 EK + R SVAPM++WTDR+CR F R+L+ + LYTEMV A+I+G + L ++ Sbjct: 7 QEKQGISGDFRLSVAPMMNWTDRYCRVFHRVLAPSARLYTEMVHAKAVIYGDRERLLGFA 66 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E PVALQLGGS+PA LA+ A +A GY EINLN GCPSDRVQ G FGACLM LV Sbjct: 67 SVEQPVALQLGGSEPALLAKAASIAVDWGYSEINLNCGCPSDRVQAGSFGACLMREPALV 126 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 ADCV AM VVS+PVTVK R+G+++ D Y F++ V G M ++HAR AWL GL Sbjct: 127 ADCVAAMAAVVSVPVTVKCRLGVNEDDDYGRFAKFVDWVIGASSSRMIVVHARNAWLQGL 186 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNP 240 SPKENREIPPL Y VY+LKR+ P L + +NGGI S+E HL +DGVM+GR AYQ+P Sbjct: 187 SPKENREIPPLRYDWVYRLKRECPELAVVLNGGITSVEAGLDHLLMVDGVMLGRAAYQDP 246 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 IL S+ ++RA+ PY+E L QG L HI RH+LGLF G PG R Sbjct: 247 YILHQF--YCALSNAPVLPRALLLRALRPYVEAWLEQGVTLRHIVRHLLGLFHGQPGGRV 304 Query: 301 WRRYLSENAHKAGADINVLEHALKLVA 327 +R+ L++ ++ AD +++E AL ++ Sbjct: 305 FRQVLTQGGQRSDADWSLVEQALSIIE 331 >UniRef50_Q5ZVH8 Zinc binding TIM barrel protein, YjbN family n=6 Tax=Legionella RepID=Q5ZVH8_LEGPH Length = 334 Score = 320 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 141/320 (44%), Positives = 209/320 (65%), Gaps = 10/320 (3%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQL 70 + S+APM+DWT+ R +RLL+ N LLYTEM TTGA+ + L ++ EHP+A+QL Sbjct: 11 SKLSIAPMIDWTNSPFRTLMRLLAPNALLYTEMQTTGAVQNNPDRALYFNSVEHPLAIQL 70 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG+D +AL +CA +AE +G++EINLN+GCPSD+VQ G FGACLM + VADC++A++ V Sbjct: 71 GGADKSALVKCAIIAEQKGFNEINLNLGCPSDKVQAGRFGACLMKEPEHVADCIRAIKQV 130 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 V IPVT KTRIGID+QDSYEF F + G C+ IIHARKAWL+GL+PK+NR IPP Sbjct: 131 VGIPVTAKTRIGIDNQDSYEFFRSFSLHLVEAG-CDKLIIHARKAWLNGLNPKQNRTIPP 189 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 ++Y VY+LK++ PH+ ++ING I ++EE HL+H+DGVM+GR A NP +A + + + Sbjct: 190 VNYDYVYELKKEIPHIFITINGNILTVEEINNHLKHVDGVMLGRLACDNPYQIAEIHQAL 249 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQ---GTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 + + + + + Y++ Q L + + + L G+PGA+ W++ L Sbjct: 250 Y----PEFIKIKRSQLLMNYLDYWFDQSRANLSLSILVKPLFNLAFGLPGAKHWKKKLMN 305 Query: 308 NAHKAGAD--INVLEHALKL 325 + ++++ L L Sbjct: 306 IIQEKNTSGFSELIQYLLNL 325 >UniRef50_A5EXU5 TRNA-dihydrouridine synthase A n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXU5_DICNV Length = 335 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 151/322 (46%), Positives = 206/322 (63%), Gaps = 4/322 (1%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVA 67 + + RF VAPM+DWT CR R+L LY+EM+TTGAI+ G + + P A Sbjct: 4 NSAWRFCVAPMMDWTTPACRQIHRILLPKARLYSEMITTGAILFGDAQRYLTHQNDEPCA 63 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 LQLGGS+P LA+ +A++ Y E+NLNVGCPSDRVQN GACLM + +LVA C+ AM Sbjct: 64 LQLGGSNPDELARATAIAQSYHYAEMNLNVGCPSDRVQNNQIGACLMKSPRLVAQCLTAM 123 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + +PV++K R+GID+QD + + DF++ +S + C +FI+HARKAWLSGLSPKENR Sbjct: 124 QKESDVPVSIKHRLGIDEQDEH-LVFDFVDQISQESPCRIFIVHARKAWLSGLSPKENRT 182 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 247 PPL Y VY++K FP LT+ INGGI + + HL ++DGVM+GR AYQ P +L A Sbjct: 183 APPLHYEIVYKIKEQFPELTIIINGGIDFIAACQNHLHYVDGVMLGRAAYQQPQLLLAAR 242 Query: 248 REIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 D +V + + L +G L TRH+LGLF G GA+++R+ LSE Sbjct: 243 ALF---GDAVMSETEIVPQITQLLMNALDRGERLHDYTRHLLGLFHGKNGAKRFRQILSE 299 Query: 308 NAHKAGADINVLEHALKLVADK 329 A +AG+DINV + AL +A + Sbjct: 300 CAPRAGSDINVWQQALAAMAPQ 321 >UniRef50_Q5SMC7 tRNA-dihydrouridine synthase n=3 Tax=Thermus RepID=Q5SMC7_THET8 Length = 342 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 149/319 (46%), Positives = 207/319 (64%), Gaps = 9/319 (2%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-YLAYSEEEHPVA 67 R SVAPM+D TDRH R+ +R +S LYTEM A++ G + LA+ EEHP+A Sbjct: 2 LDPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIA 61 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 LQL GSDP +LA+ A++ EA GYDEINLN+GCPS++ Q G +GACL+ + V + +KAM Sbjct: 62 LQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAM 121 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + V +PVTVK R+G++ +++Y L + ++ G ++F++HAR A L+ LS K NRE Sbjct: 122 GEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAG-VKVFVVHARSALLA-LSTKANRE 179 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 247 IPPL + V++LK DFP LT NGGI+SLEEA HL+ +DGVM+GR Y++P +L D Sbjct: 180 IPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLKRVDGVMLGRAVYEDPFVLEEAD 239 Query: 248 REIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 R +FG + V R M Y+E E+ +GT + RHML LF+G P R WRR LSE Sbjct: 240 RRVFGLP-RRPSRLEVARRMRAYLEEEVLKGTPPWAVLRHMLNLFRGRPKGRLWRRLLSE 298 Query: 308 NAHKAGADINVLEHALKLV 326 G + L+ AL+L+ Sbjct: 299 -----GRSLQALDRALRLM 312 >UniRef50_A6U9Y2 Dihydrouridine synthase DuS n=3 Tax=Rhizobiaceae RepID=A6U9Y2_SINMW Length = 385 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 164/354 (46%), Positives = 209/354 (59%), Gaps = 41/354 (11%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQLG 71 F+VAPM+DWTDRH R+F R+LSR+ LLYTEM+ A++ G + L + EHPVALQLG Sbjct: 22 FAVAPMIDWTDRHYRFFARVLSRHALLYTEMIVADAVLRGDRAKLLGHDASEHPVALQLG 81 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G+DP +A+ A++ EA GYDEIN+NVGCPSDRVQ+G FGACLM LVADC+ AM+ V Sbjct: 82 GNDPVKMAEAARIGEAYGYDEINMNVGCPSDRVQSGTFGACLMQEPALVADCIAAMKAAV 141 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 IPVTVK RIG+DDQD L D + G + +HARKAWL GLSP+ENREIPPL Sbjct: 142 EIPVTVKCRIGVDDQDPEVALRDLVKCAKDAG-TDGVWVHARKAWLQGLSPRENREIPPL 200 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--------------------HMDGVM 231 DY V++LK + L + INGG++ L++A +HL +DGVM Sbjct: 201 DYGLVHRLKAENESLFIGINGGLQGLDQALSHLDPRSLPAGEAMKAATEIKSGAPLDGVM 260 Query: 232 VGREAYQNPGILAAVDREIFGS------SDTDAD-------------PVAVVRAMYPYIE 272 +GR AY + G+L A D TD D V M Y Sbjct: 261 LGRAAYHDSGLLTAADGYFRHPLTGAAAVPTDPDGFSDRDHNLSLEFWSGVRDVMEDYAA 320 Query: 273 RELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLV 326 + G L H+TRHM+GLFQG PGAR++R+ LS A + A V+ A V Sbjct: 321 AHIENGGRLIHVTRHMVGLFQGWPGARRYRQILSTRATRKDAGPEVIHTAFDAV 374 >UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia RepID=C9XSF8_CLODC Length = 322 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 70/328 (21%), Positives = 143/328 (43%), Gaps = 23/328 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEE 62 ++ + ++PM TD R + LLYTEM+ A+ + L EE Sbjct: 5 NLELKNKVFLSPMAGVTDLPFRLICKEQGC-GLLYTEMINGKALCYDDENTKKMLKIEEE 63 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 EHPVA+Q+ GS+P + + A++ + +++N+GCP+ +V G+ LM N +L + Sbjct: 64 EHPVAVQIFGSEPEFMGRAAEIMNDYSNEILDINMGCPAPKVVKNGDGSALMKNPKLAEE 123 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 ++A+ PVT+K R G DD I ++ IH R Sbjct: 124 VLRAVVKNSKKPVTLKIRKGWDDNSVNAVE---IAKIAEDCGISALAIHGRT-------- 172 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNP 240 +E D+ + ++K++ + + NG + ++E++ L D +M+GR A NP Sbjct: 173 REQFYTGKADWDIIAEIKKNLS-IPVIGNGDVFTIEDSINMLDKTGCDAIMIGRGAQGNP 231 Query: 241 GILAAVDREI-FGSSDTDADPVAVVRAMYPYIE---RELSQGTYLGHITRHMLGLFQGIP 296 I ++ + G + + +++ E + + + +H+ +G+ Sbjct: 232 WIFKRINHYMNTGEILPEPTLNEKISTAIKHLKLAVEEHGEYVAVREMRKHIAWYLKGLR 291 Query: 297 GARQWRRYLSENAHKAGADINVLEHALK 324 + + R +++ ++ LE+ ++ Sbjct: 292 NSAKLRDEINK-IEDYQEVVSKLEYYME 318 >UniRef50_D1AMN2 Dihydrouridine synthase DuS n=3 Tax=Bacteria RepID=D1AMN2_SEBTE Length = 337 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 138/328 (42%), Positives = 194/328 (59%), Gaps = 15/328 (4%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHPVAL 68 SVAPM+D TDR+ R F+R+++++ LLYTEMVT AIIHG L + E EHP+AL Sbjct: 5 KPVISVAPMVDKTDRYFRNFVRMINKDVLLYTEMVTAQAIIHGDLERILGFDEAEHPIAL 64 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ + P + K AE YDEINLNVGCPSDRV M GACLM +LV D +KA++ Sbjct: 65 QIAATTPEDAYKAVKTAENYAYDEINLNVGCPSDRVSGNMMGACLMAYPELVLDILKAIK 124 Query: 129 DVVSIPVTVKTRIGIDDQ------------DSYEFLCDFINTVSGKGECEMFIIHARKAW 176 + VT+K RIGID + D YE + +FIN + G + + +HAR A Sbjct: 125 EATGKAVTIKHRIGIDGKGILPDNAEKTLFDKYEDMLNFINIIEKAG-ADRYTVHARIAV 183 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREA 236 L+GL PK+NRE+PPL Y VY+LK + P++ + INGGIK+ E+ HL+++DGVM+GRE Sbjct: 184 LAGLDPKQNREVPPLRYDEVYRLKAEKPYMQIEINGGIKTKEDITEHLKYVDGVMIGREF 243 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 Y NP +LA V+ + + + + V+ M PY+E+ RH LGLF + Sbjct: 244 YDNPMLLAEVNS-FYNNGEENISRYQVLEKMIPYLEKMEMNNERTHLFLRHTLGLFHNVK 302 Query: 297 GARQWRRYLSENAHKAGADINVLEHALK 324 G++ W+ +S K ++ LK Sbjct: 303 GSKYWKNSISSQNLKNNKGSLIIREILK 330 >UniRef50_C6XGY7 tRNA-dihydrouridine synthase A n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XGY7_LIBAP Length = 322 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 148/322 (45%), Positives = 202/322 (62%), Gaps = 13/322 (4%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQLGGSDPA 76 M+DWTDRH R+F RLL+ N LLYTEM+ AI+ G K + L +S +E P+ALQ+GG+D + Sbjct: 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADIS 60 Query: 77 ALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVT 136 L + AK+ E GY+EINLNVGCPS RV G FGACLM N +V DC+ AM +SIPVT Sbjct: 61 KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVT 120 Query: 137 VKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRV 196 VK RIG+DDQ L + + ++ G IHARKA L GLSPK+NR+IP LDY V Sbjct: 121 VKCRIGVDDQIPAVALRNLVKSIKKSG-VNGIWIHARKAILKGLSPKDNRKIPNLDYDIV 179 Query: 197 YQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDT 256 Y++K++ P L + +NGG++ + +A L +DGVM+GR AY+N +L VD E F + T Sbjct: 180 YEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVD-EYFSNPLT 238 Query: 257 DADPV----------AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLS 306 + P+ + +M Y R L G L ITRHM+GLF G P +R+ R L+ Sbjct: 239 GSSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILT 298 Query: 307 ENAHKAGADINVLEHALKLVAD 328 A + A +++E A L+ + Sbjct: 299 VEAGASTATHHIIETAFNLMIE 320 >UniRef50_B7J4N8 tRNA-dihydrouridine synthase A n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7J4N8_ACIF2 Length = 330 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 148/295 (50%), Positives = 194/295 (65%), Gaps = 6/295 (2%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG--DYLAYSEEEHPVALQL 70 SVAPMLDWTDRHCRYFLRL+ + +LYTEMVTT A++ G+ +L +S EHP+ LQL Sbjct: 19 LSVAPMLDWTDRHCRYFLRLVCPSCVLYTEMVTTSALLLGRDPERFLEFSGAEHPLILQL 78 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG DP A+ ++A A GYD +NLNVGCPS RVQ G FGACLM LVA+ V AM + Sbjct: 79 GGDDPHAMHAAGRMARAYGYDGLNLNVGCPSPRVQKGSFGACLMTTPDLVAELVAAMGES 138 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 +PV+VK R+G+D ++ Y L F+ TV+ G C FI+HAR AWL GLSP ENR++PP Sbjct: 139 -GLPVSVKHRLGLDREEDYAALRAFVETVATAG-CRHFIVHARNAWLKGLSPAENRDVPP 196 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L + V+QLKRD PHLT+ INGG L A +DGVM+GR AY +P +LA ++R + Sbjct: 197 LRWDWVHQLKRDLPHLTIEINGGFNDLAAVTAQFSAVDGVMLGRAAYHHPLLLAEIERAL 256 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL 305 G +T +P ++ + Y ER + ++RH+ GL G GA WRR+L Sbjct: 257 -GRRETLPEPEVILSGLIAYAERW-GEWLPAPRLSRHLHGLRFGQRGAGAWRRFL 309 >UniRef50_C9MVS9 tRNA dihydrouridine synthase A n=2 Tax=Leptotrichia RepID=C9MVS9_9FUSO Length = 332 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 132/329 (40%), Positives = 192/329 (58%), Gaps = 16/329 (4%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY-LAYSEEEHPVAL 68 + S+APM+D TDR+ R F+R+++++ LLYTEM+T A+++G DY L + E EHP+ L Sbjct: 7 KNKISIAPMVDRTDRNFRNFVRMINKDVLLYTEMITAQAVLNGDLDYILGFDEVEHPIVL 66 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ ++P Q K+AE YDEINLNVGCPSDRV M GA LM + VA+ VK+M+ Sbjct: 67 QIAATNPKEAYQAVKIAEKYNYDEINLNVGCPSDRVSGNMMGAYLMAFPEEVANIVKSMK 126 Query: 129 DVVSIPVTVKTRIGIDDQ------------DSYEFLCDFINTVSGKGECEMFIIHARKAW 176 D PV+VK RIGID + D YE + +FI +++ + +IIHAR A Sbjct: 127 DATGKPVSVKHRIGIDGKNVLPNSFKRTLLDKYEDMENFI-SITKQAGVSKYIIHARIAI 185 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREA 236 L+GL PK+NR IPPL Y VY++K+D P L + INGGIK++EE HL+++D M+GRE Sbjct: 186 LAGLDPKQNRSIPPLRYDEVYRVKKDNPDLHIEINGGIKTVEEIDEHLKYVDSAMLGREI 245 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 Y NP IL + + + ++ M Y+E Q H GLF + Sbjct: 246 YDNPMILTEFGKYY--GKEINITRKEIIEKMIYYVENMEKQQLRPHLFLMHAHGLFHNVR 303 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKL 325 G++ W+R ++E +G +L+ Sbjct: 304 GSKAWKRAINEPKANSGTLRELLKKIENF 332 >UniRef50_C6NVP5 tRNA-dihydrouridine synthase A n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVP5_9GAMM Length = 335 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 138/295 (46%), Positives = 178/295 (60%), Gaps = 6/295 (2%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG--DYLAYSEEEHPVALQL 70 SVAPMLDWTDRHCRYFLRL+ + +LYTEM+ T A++ GK YLA++ E P+ LQL Sbjct: 17 LSVAPMLDWTDRHCRYFLRLICPSCVLYTEMIHTSALVLGKSPERYLAFTAAEQPLVLQL 76 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG DP A+A+ A LA GY +NLNVGCPS RVQ G FGACLM LV + + A+ Sbjct: 77 GGDDPEAMARAAILARDYGYTGVNLNVGCPSTRVQRGNFGACLMLTPALVREIIDAL-AG 135 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 +PV+VK R+G+D Q+ Y L DF+ V+ G C F++HAR AWL GLSP NR IPP Sbjct: 136 SGLPVSVKHRLGLDRQEDYGQLADFVAQVA-AGSCRHFVVHARNAWLRGLSPAANRTIPP 194 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L + V +LK DFP L +NGG+ ++ + +A +DGVM+GR AY P + Sbjct: 195 LRWDWVARLKEDFPGLRFELNGGLDTVPKVEAQWSRVDGVMIGRAAYHRP-LFLTELELA 253 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL 305 G A V A+ Y E +TRH+ G F G PGA WR++L Sbjct: 254 LGRRQAPARRAEVFAALLAYTEDW-GAALPAPRLTRHLHGFFFGEPGANAWRQFL 307 >UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLJ7_ACIFE Length = 331 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 83/326 (25%), Positives = 137/326 (42%), Gaps = 21/326 (6%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69 ++APM TD R R L + +EMV+ A++ L EHPVA+Q Sbjct: 19 IALAPMAGVTDLPFRVICRELGAD-YTVSEMVSAKALLFKNPKTFAMLEVDPREHPVAIQ 77 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 L GS P L + AK+ G D I+ N+GCP ++ G+ LM + + C+ A+ D Sbjct: 78 LFGSVPEELVKGAKIVAEHGADIIDFNMGCPVHKIVANGEGSALMKDPERAYACLAALVD 137 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 V PVTVK R G D+ I ++ K +H R + Sbjct: 138 AVDRPVTVKFRAGWDEDHRNAVE---IARLAEKAGVAAVAVHGRT--------RGQFYSG 186 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAVD 247 D+ + Q+K + + NG + + ++A L H DGVM+ R A NP I V Sbjct: 187 KADWDIIRQVKEAVS-IPVLGNGDVFTAQDALDLLAATHCDGVMIARGAQGNPWIFREVQ 245 Query: 248 REIFGSSDTDA---DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRY 304 + G + + A+VR + + + + H F G+P + +R Sbjct: 246 AVLAGKTIPPVTLEERFAMVRRHLRDLTAFKGEKVAIREMRHHGACYFTGLPHSAHYRNA 305 Query: 305 LSENAHKAGADINVLEHALKLVADKR 330 +++ K + + E+ +L++ R Sbjct: 306 INQCLTKEAFEEVLEEYEGELISSGR 331 >UniRef50_B1XUD8 Dihydrouridine synthase DuS n=2 Tax=Polynucleobacter necessarius RepID=B1XUD8_POLNS Length = 362 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 146/321 (45%), Positives = 202/321 (62%), Gaps = 24/321 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHPVAL 68 R +VAPM++WTDRHCR F R L++ +LYTEMVTTGA++HG +L YS+++HPV L Sbjct: 8 KKRLAVAPMMEWTDRHCRSFHRALTKKAVLYTEMVTTGALMHGDVPRHLDYSQDQHPVIL 67 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 QLGGS+P LA+ A+LA+ GYDEI+LN GCPS+R+Q G FGACLM LVA+CVK+M+ Sbjct: 68 QLGGSEPNDLAKSAELAQQWGYDEIDLNCGCPSERMQRGAFGACLMAEPNLVAECVKSMK 127 Query: 129 DVVSIPVTVKTRIGIDDQDS------YEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 V +P++VK R+G+D D+ Y+F +FI V+ G + IHAR A L GLSP Sbjct: 128 SAVDVPISVKHRLGLDSMDAAHSEADYQFALNFILAVADAGASQ-VTIHARNAVLKGLSP 186 Query: 183 KENREIPPLDYPRVYQLKRD----FPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQ 238 KENR PPL Y +L+ D FP L + +NGG+++ E+ H DG MVGR AY Sbjct: 187 KENRSRPPLRYEVAAKLRLDAQIHFPKLKVLLNGGLETNEQIAGHWNGFDGFMVGRAAYH 246 Query: 239 NPGILAAVDR----------EIFGSSDTDADPVAVVRAMYPYIERELSQGT--YLGHITR 286 P +L D +F S+ +A+V+ ++ + + S+G Y+G TR Sbjct: 247 FPALLLGWDDMITTDGDAAGYLFSESEWHRIQIALVKQVHAWFDECQSKGKPFYIGVFTR 306 Query: 287 HMLGLFQGIPGARQWRRYLSE 307 H+LGL G G+R WR+ LS+ Sbjct: 307 HILGLAHGRAGSRYWRQRLSD 327 >UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacteroidetes/Chlorobi group RepID=B3QWF2_CHLT3 Length = 402 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 140/327 (42%), Gaps = 27/327 (8%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEE 63 + +APM D TD R + + +++TE +++ +I L ++E Sbjct: 50 IEIEKPVILAPMEDVTDPSFRRLCKHYGAD-IVFTEFISSDGLIRHAVKSKRKLDVFDDE 108 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 PVA+Q+ G+ + + A++AEA G D I++N GCP+ +V G+ L+ L+ Sbjct: 109 RPVAIQIFGNQIEPMVEAAQMAEAAGPDFIDINYGCPAKKVAGKGAGSGLLCQPDLMEKI 168 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 A+ V +PVT KTRIG D++ + D + + G G + IH R + Sbjct: 169 TDAVVKAVRLPVTAKTRIGWDERSI--SILDTVRRLEGCG-IQALSIHGRT--------R 217 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPG 241 D+ + + K + + + NG I + E+AK DGVM+GR A NP Sbjct: 218 AQMYKGRADWSWIARAK-EVATIPIIGNGDIWTAEDAKRMFDETGVDGVMIGRGAIGNPF 276 Query: 242 ILAAVDREIF-GSSDTDADPVAVVRAMYPYIERELS---QGTYLGHITRHMLGLFQGIPG 297 + I G A V ++E L + + + RH +G+P Sbjct: 277 LFREAKHLIQTGEHLPQATHRERVAVAIRHLEMSLERKGEKYGVLEMRRHYSTYLKGLPN 336 Query: 298 ARQWRRYLSENAHKAGADINVLEHALK 324 + R YL D N++ AL+ Sbjct: 337 VSKVRDYLVREN-----DPNLIVEALR 358 >UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteobacteria RepID=Q2LR94_SYNAS Length = 326 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 75/313 (23%), Positives = 136/313 (43%), Gaps = 24/313 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHP 65 +APM ++ R R L +TEM++ ++ G Y+ ++ P Sbjct: 9 IKNNVILAPMAGISNLPFRMMAREAGC-ALAFTEMISANGLVRGIEKSQQYMKSCIDDKP 67 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + +Q+ G+DP +A ++ + G D I+LN+GCP +V GA L+ + LV+ ++ Sbjct: 68 LGVQIFGNDPTTMADAVRIVDDYGADLIDLNMGCPVKKVVKNGAGAALLKDPGLVSQILE 127 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 ++R P+TVK R G + Q I ++ + + +HAR A Sbjct: 128 SVRKATRKPLTVKIRSGWNLQSINAV---QIARIAEQQGIDAVFVHARTA--------VQ 176 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQNPGIL 243 D+ + ++K + + NG +KS +A + DGVM+GR A NP I Sbjct: 177 GFAGSADWRIIEEIKNSV-GIKVIGNGDVKSGADAWRMIKMTGCDGVMIGRGALGNPWIF 235 Query: 244 AAVDREIFGSSDTDADPV--AVVRAMYPYIERE---LSQGTYLGHITRHMLGLFQGIPGA 298 + T ++PV + ++ERE L Q + +H+L +GI G Sbjct: 236 NEALNY-QSTVQTHSEPVLNERKEMILRHLERETIFLGQKEAVKRFRKHLLWYTKGIRGG 294 Query: 299 RQWRRYLSENAHK 311 +R ++ + + Sbjct: 295 ASFRSRVTTISDQ 307 >UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDP2_9FIRM Length = 321 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 82/322 (25%), Positives = 136/322 (42%), Gaps = 22/322 (6%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69 +APM TD R R + +EMV+ A+++ L +EHP A+Q Sbjct: 11 VVLAPMAGVTDLPFRVICRENGAD-YTVSEMVSAKALLYKNQKTFAMLTIDPKEHPTAIQ 69 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 L GS P+ LA K+ E+RG D I++N+GCP ++ + G+ LM + V + A+ D Sbjct: 70 LFGSVPSELAAAGKIVESRGADMIDVNMGCPVHKIVSNGEGSALMKDPDKVYAILAALVD 129 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 VSIPVTVK R G D+ + I ++ K +H R + Sbjct: 130 AVSIPVTVKFRAGWDEAHKNAAV---IAQMAEKAGVSAVCVHGRT--------RAQFYQG 178 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILAAVD 247 D+ + +K + + NG I E+A + DGVM+ R A NP I V Sbjct: 179 KADWDIIRAVKESV-GIPVLGNGDIFHAEDALRMKEETGCDGVMIARGAEGNPWIFRDVK 237 Query: 248 REIFGSSDTDAD---PVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRY 304 + G + + A++R + + + + H G+P + +R Sbjct: 238 ALLHGKAISPVSVQERFAMIRRHLHDLILFKGERVGVREMRHHGAMYLTGLPHSAYYRNT 297 Query: 305 LSENAHKAGADINVLEHALKLV 326 +++ A A + VL + + Sbjct: 298 INQ-AQTEEALLAVLGEYEEKL 318 >UniRef50_C7NAG3 Dihydrouridine synthase DuS n=1 Tax=Leptotrichia buccalis C-1013-b RepID=C7NAG3_LEPBD Length = 331 Score = 296 bits (758), Expect = 7e-79, Method: Composition-based stats. Identities = 127/326 (38%), Positives = 188/326 (57%), Gaps = 17/326 (5%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK--GDYLAYSEEEHPVA 67 + S+APM+D TDR+ R F+R+++++ LLYTEM+T AII+ K L + + E+P+ Sbjct: 5 KNKISIAPMVDRTDRNFRNFVRMINKDVLLYTEMITAQAIINTKDLNYLLGFDKIENPIV 64 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 LQ+ ++P + K+AE YDEINLN+GCPSDRV M GA LM ++VAD +KAM Sbjct: 65 LQIAATNPKEAYEAVKIAEKYDYDEINLNIGCPSDRVSGNMMGAYLMAFPEVVADIIKAM 124 Query: 128 RDVVSIPVTVKTRIGIDDQ------------DSYEFLCDFINTVSGKGECEMFIIHARKA 175 +D + P+++K RIGID + D YE + +FIN ++ K +IIHAR A Sbjct: 125 KDATNKPISIKHRIGIDGKNILPDYFERTLLDKYEDMMNFIN-ITKKTGVNKYIIHARIA 183 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGRE 235 L+GL PK+NR IPPL Y VY++K++ P L + ING IKS++E HL++ D VM+GRE Sbjct: 184 VLAGLDPKQNRSIPPLRYDEVYRVKKENPDLHIEINGEIKSVDEIDEHLKYTDSVMMGRE 243 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 Y NP IL + D + ++ M Y+E Q H GLF + Sbjct: 244 IYDNPMILTEFGKYY--GKDINITREEIIEKMIYYVENMERQNIRPHLFLMHTHGLFHNV 301 Query: 296 PGARQWRRYLSENAHKAGADINVLEH 321 G++ W+R ++ + +L Sbjct: 302 RGSKFWKRAINNPKANSETLRKLLSE 327 >UniRef50_Q0JEG3 Os04g0278900 protein n=3 Tax=Oryza sativa RepID=Q0JEG3_ORYSJ Length = 368 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 129/321 (40%), Positives = 182/321 (56%), Gaps = 10/321 (3%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVALQLGGSD 74 M+DWTD H R RL+S++ LYTEMV I+H K +LA+ E+HP+ LQ+GGS+ Sbjct: 1 MMDWTDNHYRTLARLISKHAWLYTEMVVAETIVHQKDNLDRFLAFPAEQHPIVLQIGGSN 60 Query: 75 PAALAQCAKLAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQLVADCVKAMRDVVSI 133 LA+ +LA A YDEINLN GCPS +V FGA LM + + V D + A+ ++ Sbjct: 61 LDNLAKATELANAYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAIAANCNV 120 Query: 134 PVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 193 PV+VK RIG+DD+DSYE LC+F++ V K FIIHARKA LSGLSP ENR +PPL Y Sbjct: 121 PVSVKCRIGVDDRDSYEELCEFVDKVVSKSPTRHFIIHARKALLSGLSPAENRNVPPLKY 180 Query: 194 PRVYQLKRDFPHLTMSINGGIKSLEEAKAHL-QHMDGVMVGREAYQNPG-ILAAVDREIF 251 + L RDFP + ++NGGI ++++ A + Q VMVGR AY NP +L VD E++ Sbjct: 181 EYYFALLRDFPDVQFTLNGGITTIDQVTASIRQGAHRVMVGRAAYNNPWNMLGHVDSEVY 240 Query: 252 GSSDTDADPVAVVRAMYPYIE----RELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 G + ++ + Y + + + + + +L LF PG W+R Sbjct: 241 GMPTRRSSRRQILESYQVYGDSIMGQYGPSRPNVRQLVKPLLNLFHSEPGNGLWKRKADS 300 Query: 308 NAHKAGADINVLEHALKLVAD 328 + LE L + + Sbjct: 301 TLRHCKTLESFLEETLDAIPN 321 >UniRef50_B6KL93 Dihydrouridine synthase domain-containing protein n=3 Tax=Toxoplasma gondii RepID=B6KL93_TOXGO Length = 394 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 147/355 (41%), Positives = 195/355 (54%), Gaps = 36/355 (10%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEHPV 66 SVAPML T+ H R F+R +R L+TEMVT GAI++ L + EHP+ Sbjct: 12 KPILSVAPMLAVTNTHFRNFMRCFTREAQLWTEMVTDGAILNNMDRLQQNLCLEDIEHPI 71 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQLVADCVK 125 QLGGSDP LA+ KL E G+DEINLNVGCPS+RV + FGA LM + V D V Sbjct: 72 VCQLGGSDPKTLAEAGKLIEKLGFDEINLNVGCPSNRVVSQGCFGAALMKTPETVRDIVH 131 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 +R V IPVTVKTRIG D DS + L +F+ TVS G C FI+HARKAWL G+ PK+N Sbjct: 132 EIRRHVQIPVTVKTRIGYDHCDSRDVLRNFVQTVS-AGGCRHFIVHARKAWLKGVDPKKN 190 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA---------------KAHLQHMD-- 228 R +PPL Y RVY L FPHL S+NGG++S+++A A L+ + Sbjct: 191 RSVPPLLYGRVYDLCDQFPHLDFSLNGGVRSIQQAIDLAAGKWTDGTAEMDALLRRITRD 250 Query: 229 -------GVMVGREAYQNPGILAAVDREIFG---SSDTDADPVAVVRAMYPYIERELSQG 278 GVM+GR A +P ILA VD + +G + T V+ A YI+ G Sbjct: 251 KTVKPLRGVMLGRAASADPCILANVDTDFYGADANPPTSHSRRTVLEAYRNYIKPFAEDG 310 Query: 279 TYLGH-ITRHMLGLFQGIPGARQWR---RYLSENAHKAGADINVLEHALKLVADK 329 Y + + +LG+F G+PG R +R +L + + +L H + V + Sbjct: 311 EYSHFALLKPVLGVFNGMPGNRLFRFTLDHLMRDQSRVWTAEEILAHTMAAVDET 365 >UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonadales RepID=Q3A324_PELCD Length = 342 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 83/329 (25%), Positives = 138/329 (41%), Gaps = 25/329 (7%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSE 61 +H +APM TD CR +R L +TEM++ ++ G D LA + Sbjct: 23 KSLHIKHNILLAPMAGITDLACRLLMRPYG-IGLAFTEMISANGLVLGGDATRDLLASTP 81 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 + P+ +QL G +P L+Q K E+ G D I+LN+GCP +V G+ LM VA Sbjct: 82 SDRPLGIQLFGENPKYLSQACKQVESHG-DLIDLNIGCPVKKVVRSGAGSALMQTPARVA 140 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 + AMR +P+TVK R G D I ++ + + +H R Sbjct: 141 QIIAAMRRATHLPLTVKIRAGWDASHINFLE---IAHIAEQEGVDAITLHPRT------- 190 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQN 239 + ++ + +LKR + + +G I + A+ LQ D VM+GR Y N Sbjct: 191 -RSQGFSGSANWDLIAELKRR-STIPVIGSGDIFEAQYAQRMLQQTGCDAVMIGRGCYGN 248 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIE---RELSQGTYLGHITRHMLGLFQGIP 296 P + + G + P ++E R + + + +H+ +G+P Sbjct: 249 PWLARDILAMRQGQTPAPVTPEERCDVALRHMELFLRFNDERKAVFDLRKHLCWYAKGLP 308 Query: 297 GARQWRRYLSENA---HKAGADINVLEHA 322 GA Q+R ++ ++ EHA Sbjct: 309 GAAQFRSSINRAMSIEEMRTLVMHFFEHA 337 >UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes RepID=C4Z9L8_EUBR3 Length = 323 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 77/310 (24%), Positives = 125/310 (40%), Gaps = 22/310 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEE 63 V + PM TD R + LL EMV+ AI++ L+ E E Sbjct: 14 VTLPNNLILGPMAGVTDLPFRLLCKEQGA-GLLCMEMVSAKAILYKNKNTESLLSIDERE 72 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 PV+LQ+ GSDP +AQ AK E R +D +++N+GCP ++ N G+ LM N L Sbjct: 73 KPVSLQMFGSDPQIMAQIAKQIEERPFDILDINMGCPVPKIVNNGEGSALMKNPLLAGQI 132 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 ++++ + PVTVK R G DD+ V+ + +H R + Sbjct: 133 IESIVKAIDKPVTVKIRKGFDDEHVNAVEL---AHVAEESGASAVAVHGRT--------R 181 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPG 241 E D+ + Q+K + + NG + S E+ + DG M+ R A NP Sbjct: 182 EQYYSGKADWDIIRQVKEAVS-IPVIGNGDLLSAEDVIKMQEQTGCDGFMIARGAQGNPW 240 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMY----PYIERELSQGTYLGHITRHMLGLFQGIPG 297 I + + + VR M + + T + + +H G P Sbjct: 241 IFSQILHYFETGEHQEKPSFEEVRRMILRHARMMIEFKGEYTGIHEMRKHTAWYTAGYPH 300 Query: 298 ARQWRRYLSE 307 + + R ++ Sbjct: 301 SSRLRAAVNT 310 >UniRef50_Q9FI41 Emb|CAB87804.1 n=16 Tax=Embryophyta RepID=Q9FI41_ARATH Length = 387 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 135/330 (40%), Positives = 182/330 (55%), Gaps = 10/330 (3%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPV 66 FS+APM+ WTD H R RL++++ LYTEM+ I++ + +LA+S ++HP+ Sbjct: 9 PPLFSIAPMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAFSPDQHPI 68 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVK 125 LQ+GG + LA+ +LA A YDEIN N GCPS +V G FGA LM + + V + + Sbjct: 69 VLQIGGRNLENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKFVGEAMS 128 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 + + VTVK RIG+DD DSY LCDFI+ VS + FIIH+RKA LSGLSP +N Sbjct: 129 VIAANTNAAVTVKCRIGVDDHDSYNELCDFIHIVSSLSPTKHFIIHSRKALLSGLSPSDN 188 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ-HMDGVMVGREAYQNPG-IL 243 R IPPL Y + L RDFP L +INGGI S+ EA A L+ GVM+GR Y NP IL Sbjct: 189 RRIPPLKYEFFFALLRDFPDLKFTINGGINSVVEADAALRSGAHGVMLGRAVYYNPWHIL 248 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQ----GTYLGHITRHMLGLFQGIPGAR 299 VD ++GS + V+ Y E L + L I R ++ LF G Sbjct: 249 GHVDTVVYGSPSSGITRRQVLEKYKLYGESVLGKYGKGRPNLRDIVRPLINLFHSESGNG 308 Query: 300 QWRRYLSENAHKAGADINVLEHALKLVADK 329 QW+R + L+ L + D Sbjct: 309 QWKRRTDAALLHCTTLQSFLDEVLPAIPDY 338 >UniRef50_A8MRX7 Uncharacterized protein At3g63510.2 n=5 Tax=Arabidopsis thaliana RepID=A8MRX7_ARATH Length = 386 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 126/317 (39%), Positives = 179/317 (56%), Gaps = 10/317 (3%) Query: 22 TDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEEEHPVALQLGGSDPAAL 78 +D H R RL++++ LYTEM+ ++H + +LA+S ++HP+ LQLGGS+ L Sbjct: 30 SDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQHPIVLQLGGSNVENL 89 Query: 79 AQCAKLAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQLVADCVKAMRDVVSIPVTV 137 A+ AKL++A GYDEINLN GCPS +V FG LM +LV + + A+ ++PVTV Sbjct: 90 AKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTV 149 Query: 138 KTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVY 197 K RIG+D+ DSY+ LCDFI VS FI+H+RKA L G+SP +NR IPPL Y Y Sbjct: 150 KCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISPADNRRIPPLKYEYYY 209 Query: 198 QLKRDFPHLTMSINGGIKSLEEAKAHL-QHMDGVMVGREAYQNPG-ILAAVDREIFGSSD 255 L RDFP L +INGGI S+ + A L + GVMVGR AY NP L VD ++G Sbjct: 210 ALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPWQTLGQVDTAVYGVPS 269 Query: 256 TDADPVAVVRAMYPYIERELSQ----GTYLGHITRHMLGLFQGIPGARQWRRYLSENAHK 311 + V+ Y + L + + + +L LF G W+R + Sbjct: 270 SGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFHSENGNSLWKRRADAAFKE 329 Query: 312 AGADINVLEHALKLVAD 328 + ++LE +L+ + D Sbjct: 330 CRSVGSLLEESLRAIPD 346 >UniRef50_C1FGA1 Predicted protein (Fragment) n=4 Tax=Mamiellales RepID=C1FGA1_9CHLO Length = 401 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 141/354 (39%), Positives = 189/354 (53%), Gaps = 37/354 (10%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK----GDYLAYSEEEHPVAL 68 SVAPM+D+T H R+ RLLSR+T LYTEM ++H YL + HP L Sbjct: 7 LSVAPMMDYTTAHFRHLCRLLSRHTWLYTEMEVDQTLVHTDHPRLDRYLDFPTATHPSVL 66 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQLVADCVKAM 127 QLGGSDP +A+ +A GYDEINLN GCPS +V FGA LM +LV D V AM Sbjct: 67 QLGGSDPETMARATAVAAPYGYDEINLNCGCPSPKVAGKGAFGAALMLEPELVRDVVAAM 126 Query: 128 RDVV-SIPVTVKTRIGIDDQDSYEFLCDFINTVSGK---GECE---MFIIHARKAWLSGL 180 R+ PVTVK RIG+DD DSY+ LC F+ TV+ + +F IHARKA L+GL Sbjct: 127 RENSGGAPVTVKCRIGVDDHDSYDDLCRFVETVACAMVPTRTDGRPLFAIHARKALLAGL 186 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD---------GVM 231 SP ENR +PPL Y Y L RDFP + +NGGI +LEEA + + G M Sbjct: 187 SPAENRTVPPLRYEWAYALARDFPEVAFVVNGGIDTLEEAAEVARGVGVPTGGGRLVGTM 246 Query: 232 VGREAYQNPG-ILAAVDREIFG-SSDTDADPVAVVRAMYPYIERELS-----QGTYLGHI 284 +GR + +P +L+ D +FG S+ ++ Y + + Y Sbjct: 247 IGRAVHADPWGVLSDADVRVFGAESNPRTSRRDLLNEYVKYCDATRGRFGTTKDGYSVPS 306 Query: 285 TRHML----GLFQGIPGARQWRRY----LSENAHKAGADI-NVLEHALKLVADK 329 TRH++ LF G P A+ WRR L E+A + ++LE L +++D+ Sbjct: 307 TRHLMHPLQNLFLGEPNAKVWRRRVDEALKEDARNPDVTVGDILERTLGVLSDE 360 >UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostridiales RepID=A9KHE5_CLOPH Length = 324 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 131/331 (39%), Gaps = 24/331 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE-- 63 +V+ +G + PM TD R + + L+YTEMV+ I + + E E Sbjct: 7 NVNINGNLVLGPMAGVTDLPFRLLCKEQGAD-LIYTEMVSAKGIYYNNKNTEVLLEVEEK 65 Query: 64 -HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 PVALQL G DP +++ AK E R +D +++N+GCP +V N G+ LM + + + Sbjct: 66 ERPVALQLFGEDPYIMSEMAKRIEHRNFDFLDINMGCPVPKVVNNGEGSALMLKPERIGE 125 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 V A+ + PVTVK R G + + V + +H R Sbjct: 126 IVSAISKAIKKPVTVKIRKGFTKDNINAVE---VAKVIEQSGGAAIAVHGRT-------- 174 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNP 240 +E D+ + +K + + NG +++ E+ K + D VM+ R NP Sbjct: 175 REQYYSGEADWDIIKAVKEAVS-IPVIGNGDVQTPEDVKRMMSYTGCDAVMIARGVRGNP 233 Query: 241 GILAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 + + + + + ++ + T + + +H+ G P Sbjct: 234 WFFSQAKHYLNTGEILAKPSVPEVIEMILRHGRLAIEVKGEFTAMHEMRKHVAWYTMGYP 293 Query: 297 GARQWRRYLSENAHKAG--ADINVLEHALKL 325 + + R ++E + E L L Sbjct: 294 KSAKLRNQVNEIETYEDLIVLMKKYEEMLDL 324 >UniRef50_Q4N9T6 TRNA-dihydrouridine synthase A, putative n=2 Tax=Theileria RepID=Q4N9T6_THEPA Length = 471 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 140/358 (39%), Positives = 196/358 (54%), Gaps = 53/358 (14%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFL----------RLLSRNTLLYTEMVTTGAII 50 M T H +APMLD T H RYF+ RLL+R T L+TEM ++I Sbjct: 74 MRNGTVSHSKPSLQIAPMLDVTYLHFRYFMDFKFDFRQFMRLLTRKTQLWTEMFVASSLI 133 Query: 51 HGKGD----YLAYSEEEHPVALQLG----------GSDPAALAQCAKLAEARGYDEINLN 96 + + +L + E EHP+ QLG G+ P L + ++ + GYDEINLN Sbjct: 134 NASNESVSRWLKFEENEHPIVAQLGIFYQHKIVPGGNCPETLVEAGRILKKFGYDEINLN 193 Query: 97 VGCPSDRVQNGM-------------FGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGI 143 GCPS RV FGA LM +LV D M + +PVTVKTR+G+ Sbjct: 194 AGCPSPRVSGKGIYKFMLKLFNLGCFGASLMKEKELVRDIAHHMLRELEMPVTVKTRLGV 253 Query: 144 DDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDF 203 D+ DSYEF+ DF++TVS G C+ FIIH+RKAWL G++PK+NR IPPL Y +VY+L+RDF Sbjct: 254 DEFDSYEFVRDFVSTVSESG-CDHFIIHSRKAWLKGINPKQNRTIPPLQYEKVYRLQRDF 312 Query: 204 PHLTMSINGGIKSLEEAKAHLQ-----------HMDGVMVGREAYQNPGILAAVDREIFG 252 PHL +INGG K++E L ++GVM+GR AY+NP +L+ VD+ I+G Sbjct: 313 PHLKFTINGGFKTMESILEALNSENLDSNNNPHKLNGVMIGRLAYENPCLLSNVDKLIYG 372 Query: 253 --SSDTDADPVAVVRAMYPYIEREL--SQGTYLGHITRHMLGLFQGIPGARQWRRYLS 306 + DT ++ YI+ + + I + +LG+F G G + +R+ LS Sbjct: 373 VENPDTCYTRRILLENYANYIDENQVDTANLNISLIVKPILGVFHGEQGNKIFRQSLS 430 >UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3 n=2 Tax=Acidobacteria RepID=Q1IVR5_ACIBL Length = 370 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 84/332 (25%), Positives = 145/332 (43%), Gaps = 22/332 (6%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG----DYLAYSEE 62 V +APM TD R F+R L L+ TE + + + YL + Sbjct: 28 VEIRPATVLAPMAGVTDTVFRRFIRNLGGCGLMMTEFTSADGLARMREAKARRYLTFYGN 87 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 E P++ QL GSD LA AK+ + G+D ++LN+GCPS RV G+ L+ + + Sbjct: 88 ERPISAQLFGSDAETLADAAKVVQDLGFDLVDLNLGCPSKRVVKCNGGSGLLRDLPQIKV 147 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 +++R V+IP TVK R G +++ E + + ++ +HAR Sbjct: 148 IFESVRKAVTIPFTVKFRAGWNEK---ELVFLELAKLAENCGLNAVAMHART-------- 196 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNP 240 +E ++ + LK+ + + NG I++ E+A A + D VM+GR A NP Sbjct: 197 REQGYSGQANWGWIADLKQ-VVKIPVIGNGDIRTPEDAAAMVAKTGCDAVMIGRSAASNP 255 Query: 241 GILAAVDREIFGSS---DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 I +++ T+ D ++R + + +QG G + + G+PG Sbjct: 256 WIFRQIEQYTATGRYDLPTNEDRYEMIRMYFRMLIENDTQGAE-GKMKQFASWFTHGVPG 314 Query: 298 ARQWRRYLSENAHKAGADINVLEHALKLVADK 329 R+ + E + + V + L+A K Sbjct: 315 GGVLRKAVYEAKKRETILVAVDQFFEALLAGK 346 >UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellular organisms RepID=D1BLD4_VEIPT Length = 328 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 88/331 (26%), Positives = 142/331 (42%), Gaps = 23/331 (6%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEE 63 V G+ +APM +D R + L+ TEMV+ I + + L + E Sbjct: 11 VKIDGQAILAPMAGVSDIAYRLLAKEHGA-ALVCTEMVSAMGIKYKNERTHELLRIEDVE 69 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 PV++Q+ GS+P A+A AK+ G D +++N+GCP +V G+ LM N L A Sbjct: 70 RPVSMQIFGSNPEAIALGAKVVANAGADIVDINMGCPVKKVVTSGDGSALMKNPDLAARV 129 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 +A + V +PVTVK RIG D + DF + G +H R K Sbjct: 130 AEAAVEAVDVPVTVKMRIGWDSDSIN--VVDFAKRIESTG-VAAIAVHGRT--------K 178 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPG 241 E D+ + +K + + NG I E+AK L D VMVGR A NP Sbjct: 179 EQMYSGHADWSYIKAVKEAVS-VPVLGNGDIVEPEDAKQMLDETGCDAVMVGRGAQGNPW 237 Query: 242 ILAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 I + + TD + + ++ + + + +G + I H +G+P Sbjct: 238 IFGRIHHYLATGEVLPGPTDIERLDMLLKHFDLLCQYKGEGMAVKEIRTHAGWYMKGLPE 297 Query: 298 ARQWRRYLSENAHKAGADINVLEHALKLVAD 328 + WR ++ + N LE K++++ Sbjct: 298 SAYWRNRVNT-IQTVTSFHNELESYRKILSE 327 >UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostridia RepID=B9MMW4_ANATD Length = 328 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 79/333 (23%), Positives = 140/333 (42%), Gaps = 24/333 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEEE 63 + G+ +APM +TD+ R + + TEM+++ A++ G D +++SEEE Sbjct: 2 LDIKGKIFLAPMAGFTDKVFRRLCSRFGAD-VTVTEMISSKALVLGSAKTKDLISFSEEE 60 Query: 64 HPVALQLGGSDPAALAQCAKLAE-ARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 +Q+ G+DP +AQ K+ + Y I++N+GCP ++ G LM N L A Sbjct: 61 KIRGVQIFGNDPEVMAQSVKILQDEFEYHFIDINMGCPVPKLVRSGEGCALMKNPSLAAK 120 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 V+ + V PV+VK R G DD++ +I SG +H R Sbjct: 121 IVEEVAKVSRKPVSVKIRKGFDDENINAPEFAYILQESGA---SFVTVHGRT-------- 169 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNP 240 + D+ + ++K + + NG I E AK + D +M+GR A NP Sbjct: 170 RAQLYSGKADWEIIRKVKEKL-KIPVIANGDIVDFESAKKAYEVTRADSIMIGRAALGNP 228 Query: 241 GILAAVDREIF-GSSDTDADPVAVVRAMYPYIERELSQGT---YLGHITRHMLGLFQGIP 296 + + G +T P +R + + S+ + +H+ +GI Sbjct: 229 WVFLQIKEGFEKGYVETKVLPHMKIRVAIEFFTQLCSEKGDKMAVLEARKHLSFFVKGIE 288 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVADK 329 A + R ++ + A + L+ + K Sbjct: 289 NAAKIRDKINR-INNATELLEFLKELASSLEKK 320 >UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH62_9BACT Length = 321 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 133/307 (43%), Gaps = 23/307 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEEEHPV 66 +AP+ ++D R + L Y+EMV+ + L + E EHP Sbjct: 8 KPLLFLAPLAGYSDSAFRQICKNWGAEVL-YSEMVSADGLTRNSAKTLQYVQFDESEHPF 66 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q+ GS+P +A+ ++ D +++N+GCP +V G+ LM L VK Sbjct: 67 GIQIFGSNPLIMARAVEVLLPLKPDFMDINMGCPVKKVIRKGAGSALMQTPSLAGKIVKE 126 Query: 127 MRDVV--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +++ + IP++VK R G + Q+ + G + +H R + Sbjct: 127 VKNALLGRIPLSVKFRSGWNFQNQNYLQFGLMLQECGA---DFLCLHPRTSS-------- 175 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGI 242 ++ ++ LK++ + + NG IK+ E+A+ + DG+M+GR A P + Sbjct: 176 QMFSGTSNWEQIKILKQNV-QIPVVGNGDIKTPEDAQRMITETNCDGIMIGRGALGKPWL 234 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIEREL---SQGTYLGHITRHMLGLFQGIPGAR 299 A + I + +V+ ++ ++++ L S+ + + H+ +GI G Sbjct: 235 FAQSRQLISTGTYNPVIQKEIVKTIFAHLDKALLYKSEDVVVREMRAHLCFYTKGILGGA 294 Query: 300 QWRRYLS 306 + R ++ Sbjct: 295 ELRNQIN 301 >UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chloroflexi (class) RepID=B8GCQ5_CHLAD Length = 351 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 86/328 (26%), Positives = 138/328 (42%), Gaps = 25/328 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI---IHGKGDYLAYSEEE 63 + +APM TD R + L L+ TEM ++ + L Y EE Sbjct: 22 IKIEPNIVLAPMAGVTDSIFRRMILRLGGCGLVSTEMTNAASVSPKALRRHRLLDYLPEE 81 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P+ +Q+ G+DP +A A++ E G D I++N GCPS +V G G+ L+ + + Sbjct: 82 RPLTMQISGNDPDLVANAARVVEQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKMERL 141 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTV--SGKGECEMFIIHARKAWLSGLS 181 ++A+R V IPVT+K R G D E +FI + +H R Sbjct: 142 LRAVRAAVQIPVTLKLRAGWD-----EASLNFIEAGQRAEAAGVAALTLHPRT------- 189 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQN 239 +E D+ RV LKR + + +G + + ++A L+ DGVM+GR A N Sbjct: 190 -REQGYKGQADWSRVAALKRAVS-IPVIGSGDVVTAQDALIRLRDSGADGVMIGRGAIAN 247 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYI---ERELSQGTYLGHITRHMLGLFQGIP 296 P I V G + + P + Y+ EL + L I + + + G+P Sbjct: 248 PWIFRQVADLRQGRTPFEPTPADKYHLLLEYMAIYAEELPERLALNKIKQLIGQFYIGLP 307 Query: 297 GARQWRRYLSENAHKAGADINVLEHALK 324 G+ R + + A A +E Sbjct: 308 GSNHLRVAVHTSTSLAAAQ-EAIERFFA 334 >UniRef50_Q8I2W5 Dihydrouridine synthase, putative n=8 Tax=Plasmodium RepID=Q8I2W5_PLAF7 Length = 577 Score = 286 bits (732), Expect = 7e-76, Method: Composition-based stats. Identities = 125/353 (35%), Positives = 194/353 (54%), Gaps = 38/353 (10%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEEEHPVALQ 69 VAPM++ T+RH R +R++++ L+TEM+ +++ ++L + EHP+ Q Sbjct: 200 IQVAPMINVTNRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEHLGFDNNEHPIVCQ 259 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQLVADCVKAMR 128 LGG D ++++ A L E GYDEIN+NVGCPS +V N FGA LM N + V + V ++ Sbjct: 260 LGGCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPEQVRNIVYEIK 319 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 V IPVTVK R G+D+ DS++FL FI TVS G C FI+HARKAWL GL PK+NR+I Sbjct: 320 KKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVG-CNHFIVHARKAWLKGLDPKQNRKI 378 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH---------------------- 226 PPL+Y +VY L + +PHL ++NGGI++++EA A L Sbjct: 379 PPLEYYKVYDLCKLYPHLKFTLNGGIQTIQEAIALLNGYMPENYNNNNNNNNDTSNFIQI 438 Query: 227 -------MDGVMVGREAYQNPGILAAVDREIFGS--SDTDADPVAVVRAMYPYIERE--L 275 ++G+M+GR +N +L+ D+ ++ T ++ A Y+E+ Sbjct: 439 DNYNINPLNGIMIGRACMENITVLSQTDKLVYNQDIPSTAYSRRTILEAYKKYLEKNSLF 498 Query: 276 SQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVAD 328 + + + +LG+ +G+PG R +R L + + E K +AD Sbjct: 499 YNLSSSFELLKPVLGILKGMPGHRIFRNKLDTYIRNYTSTLPCSEILEKAIAD 551 >UniRef50_D0NZC8 tRNA-dihydrouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NZC8_PHYIN Length = 379 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 129/351 (36%), Positives = 191/351 (54%), Gaps = 34/351 (9%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVAL 68 R SVAPM+DWTDRH R+ +R++++ TLL+TEMV +++ + + +L + E P+AL Sbjct: 9 RLSVAPMMDWTDRHYRFMMRMITKKTLLFTEMVVDQTLLYQRKNLDYFLGHDPAEAPLAL 68 Query: 69 QLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 QLGG+ L A L+++ G+ EINLN GCPS V + FGA LM + V D +M Sbjct: 69 QLGGNSVEDLGAAAHLSQSYGGFCEINLNTGCPSALVSSRCFGARLMLEPERVRDICDSM 128 Query: 128 RDVV--------SIP---VTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 R V P VTVK RIG+DD DSY+ L ++ V+ G I+HARK Sbjct: 129 RHSVALASEGNPDHPTAEVTVKCRIGVDDCDSYDELHHYVAAVASAG-VRHIIVHARKCL 187 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGR 234 L GLS K+NR IPPL Y VY+LK+DFP L+ ++NGG+KS++ A+ L ++DG+M+GR Sbjct: 188 LKGLSTKDNRTIPPLRYEVVYRLKQDFPELSFTLNGGVKSIQHARELLNTTNVDGIMIGR 247 Query: 235 EAYQNPGILAAVDREIF-GSSDTDADPVAVVRAMYPYIER---ELSQGTYLGH------- 283 AY P DR IF + + ++ Y E + L Sbjct: 248 AAYNTPWNFRDADRLIFNAERNPNLSRREIIERYLEYAEDLQAKWGSTEPLSDSPYTMAT 307 Query: 284 --ITRHMLGLFQGIPGARQWRRYLSENAHKAGADINV---LEHALKLVADK 329 + + +L LF G G + ++R +S K G + +E A+K++ + Sbjct: 308 SALMKPLLSLFNGEFGGKAFKREISAQWSKKGPRPELREMIESAMKVLPSE 358 >UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organisms RepID=C1FNC8_CLOBJ Length = 323 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 131/310 (42%), Gaps = 22/310 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEE 62 ++ + +APM +TD R + L L+YTEMV+ A+ + + S + Sbjct: 5 NLIFHNNVFLAPMAGFTDIAFREICKELGC-GLVYTEMVSAKALYYESNNTKELCVISNK 63 Query: 63 EHPVALQLGGSDPAALAQCAKL-AEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E PVALQL G +P +A + +++N+GCP+ ++ G+ LM + +L + Sbjct: 64 EKPVALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPKLAS 123 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 + +KAM+ V P+TVK R G D + + + + IH R Sbjct: 124 EIIKAMKKVAKKPITVKFRKGFDKNNINAVE---FAKIMEQSGVDAITIHGRT------- 173 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQN 239 +E D+ + ++K + + NG + S E+A + DG+M+GR A N Sbjct: 174 -REQMYEGKADWAIISKVKNSVS-IPVIGNGDVFSSEDALEMINKTDCDGIMIGRGAQGN 231 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIE---RELSQGTYLGHITRHMLGLFQGIP 296 P I ++ +I G P + + + + + + +H+ +G+ Sbjct: 232 PWIFKQINEKIKGEHVYYPTPQERIDICINHYKKSLEYFEEHKAVREMRKHVAVYVKGLK 291 Query: 297 GARQWRRYLS 306 + ++ Sbjct: 292 NCTDIKDKVN 301 >UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=Alphaproteobacteria RepID=DUS_RICBR Length = 326 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 143/339 (42%), Gaps = 23/339 (6%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS 60 M + ++ S +APM TD R ++ L+ +EM+ + A+I L Sbjct: 1 MIKIGNIELSSNIILAPMSGVTDLEFRRLVKRFGA-GLVVSEMIASRAMIVESRQSLQKC 59 Query: 61 ----EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 ++ +QL G +P +A+ AK+ E G I+LN GCP+ +V NG G+ LM + Sbjct: 60 SIMQDDATSACVQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVNGYSGSALMRD 119 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 L A +A V IPVTVK R+G DDQ ++ + +M +H R Sbjct: 120 EGLAAKIFEAAVKAVKIPVTVKMRMGWDDQTKNAPTL---AKIAERSGIQMVTVHGRT-- 174 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGR 234 + D+ + +K + + NG I + +AK L+ DGVMVGR Sbjct: 175 ------RCQFYSGNADWEFIKNVKEAV-KIPVIANGDITNFAKAKEALEKSSADGVMVGR 227 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVA----VVRAMYPYIERELSQGTYLGHITRHMLG 290 AY P +++ +D + + A + +V Y I + + +HM Sbjct: 228 GAYGKPWLISQIDHYLKTGEEKPAPSIESQLDIVLEHYQAIVDYYGESAGVPIARKHMGW 287 Query: 291 LFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVADK 329 G+P + ++R ++ ++E ++ + Sbjct: 288 YSSGLPNSAEFRGAVNLMNDPIAVKDKIVEFYTSVINRE 326 >UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria RepID=B7GFK6_ANOFW Length = 351 Score = 282 bits (723), Expect = 8e-75, Method: Composition-based stats. Identities = 76/316 (24%), Positives = 132/316 (41%), Gaps = 23/316 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 +V + +APM + R ++ L+ EMV+ AI+ L E Sbjct: 24 NVQINNPVVLAPMAGVCNSAFRLTVKEFGA-GLVCAEMVSDKAILFNNPKTMGMLYIDER 82 Query: 63 EHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E P++LQ+ G + L Q AK + D I++N+GCP ++ GA + + + Sbjct: 83 EKPLSLQIFGGEKETLVQAAKYVDQHTNADIIDINMGCPVPKITKCDAGAKWLLDPNKIY 142 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 D V A+ D V PVTVK RIG D+ Y + V G + +H R Sbjct: 143 DMVAAVVDAVEKPVTVKMRIGWDENHIYA--VENAQAVERAGG-QAVAVHGRT------- 192 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQN 239 + D+ + Q+K + + NG +++ ++AK L+ DGVM+GR A N Sbjct: 193 -RVQMYEGKADWNVIKQVKEAV-RIPVIGNGDVQTPQDAKRMLEQTGVDGVMIGRAALGN 250 Query: 240 PG-ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELS---QGTYLGHITRHMLGLFQGI 295 P I V G + + +++R ++ + + + +H +GI Sbjct: 251 PWMIYRTVRYLETGELIPEPSVREKIEVCILHLDRLIALKNEYIAVKEMRKHAAWYLKGI 310 Query: 296 PGARQWRRYLSENAHK 311 G + R ++E + Sbjct: 311 RGNAKVRNAINECQTR 326 >UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobacterineae RepID=Q090Q9_STIAU Length = 369 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 83/319 (26%), Positives = 131/319 (41%), Gaps = 22/319 (6%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEE-EH 64 + +APM ++R R L TE+V+ ++ YL +S E E Sbjct: 41 LPNPYILAPMAGVSERPFRVIAFKWGA-ALCPTELVSAQGLMRANQRTLKYLRFSPEVER 99 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P +LQ+ G +P A+AQ A + +A G I++N+GCP +V G+ LM A V Sbjct: 100 PYSLQIFGGEPEAMAQAALVGKAHGAQIIDINMGCPVKKVTKNGAGSALMCEPLRAARIV 159 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +A+ + +PVT K R G D + G C IH R ++ Sbjct: 160 QAIAEATGLPVTCKIRSGWDAHHRNY--LQMAGELFSAG-CAALAIHPRT--------RD 208 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGI 242 D+ + LKR FP T+ NG +K+ +A+ + D VM+GR A NP I Sbjct: 209 QGYSGFADWSVIADLKRHFPDRTLIGNGDVKTPADARRMRETTGCDFVMIGRGALGNPWI 268 Query: 243 LAAVDREIFGSSDTDADPVA-VVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 + G T + A V+ ++E + RHM G+ GA + Sbjct: 269 FRELAG---GPPPTPEERCAGVLEHFRAHVEFVGEPLGAVRSFRRHMAWYAHGLHGAAAF 325 Query: 302 RRYLSENAHKAGADINVLE 320 R ++ A + V+ Sbjct: 326 RAEVNTLETPASVEDAVVR 344 >UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostridia RepID=C8W3U6_DESAS Length = 322 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 22/311 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 +V R APM TDR R + L+ TEM++ A+++G L + E Sbjct: 6 NVTIKNRVISAPMAGITDRAYRILAKEAGC-GLVCTEMISDQALLYGNPKTNILLDCTGE 64 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 P+++Q+ GS P +A+ A + EARG I++N+GCP+ ++ GA LM +L Sbjct: 65 TPPISMQIFGSSPEYMARAASITEARGASIIDINMGCPTPKIVKNGEGAALMRKPELAQK 124 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 + + V +PVTVK R G D+ ++ + + +H R Sbjct: 125 IISDVVQSVRVPVTVKIRKGWDESFPNAVEMAL---LAEEAGAKAVTVHGRT-------- 173 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNP 240 + D+ + +K+ + + NG I+ +A L D VM+GR + NP Sbjct: 174 RSQFYSGKADWDIIKSVKKAV-TIPVIGNGDIREPRDAVRMLMHTGCDAVMIGRASLGNP 232 Query: 241 GILAAVDR-EIFGSSDTDADPVAVVRAMYPYIERELS-QGTY--LGHITRHMLGLFQGIP 296 I ++ G + P + ++E + +G Y + + +H +G+ Sbjct: 233 WIFSSTVHFLDCGENLPAPSPRQRLSVALRHLELLIELKGEYIAIREMRKHAAWYTRGLR 292 Query: 297 GARQWRRYLSE 307 A + R ++ Sbjct: 293 EANRIREKINR 303 >UniRef50_B7XK29 NIFR3-like protein n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XK29_ENTBH Length = 321 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 110/322 (34%), Positives = 181/322 (56%), Gaps = 14/322 (4%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS--EEE 63 D + ++APM+ T R ++L++ T+LYTEM+T II+ + L + + Sbjct: 4 DKLIRPKIALAPMMKVTTPCFRKLIQLIAPTTILYTEMITASTIINLNDEKLQITLGNPD 63 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 + +Q+GGS+P + K + G+ NLN GCPS RVQ GMFGA LM +LV + Sbjct: 64 NQTVVQIGGSNPKDIVNAIKRLKQCGWRLFNLNCGCPSTRVQKGMFGAILMKYKELVIEI 123 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + + I +++K R GID+ DSYEFL +FI ++S C +F IHARK WL G++PK Sbjct: 124 INTVYIETQIILSIKCRTGIDEFDSYEFLKEFIESISKNTPCNIFYIHARKCWLQGINPK 183 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIK--SLEEAKAHLQHMDGVMVGREAYQNPG 241 +NR IPPL+Y ++++K++FPHL + INGGI S + K + DG+M+GREA +NP Sbjct: 184 QNRNIPPLNYDYIFRIKKEFPHLFIGINGGITYNSYLKYKFQMDTCDGIMIGREAIKNPL 243 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 I A + + + ++++ + +IE + I + L +G P ++ + Sbjct: 244 IFAEI-------INMPINIQYIIQSYFKFIEM---SNFTIYKILYPLCNLRRGKPNSKHF 293 Query: 302 RRYLSENAHKAGADINVLEHAL 323 ++ +++ H +N L + L Sbjct: 294 KQMINQLLHNKLITVNELSNVL 315 >UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bacteroidetes RepID=C7PIH0_CHIPD Length = 354 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 133/314 (42%), Gaps = 24/314 (7%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPVALQ 69 +APM D +D R + + L+YTE +++ +I L + E PV +Q Sbjct: 14 LLLAPMEDVSDPPFRAVCKEKGAD-LMYTEFISSEGLIRDAIKSRRKLDIFDYERPVGIQ 72 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 + G D +A A++ EA D +++N GCP +V G+ ++ + + A+ Sbjct: 73 IFGGDEEPMAMAAQIVEATNPDLLDINYGCPVKKVVCKGAGSGILKDIPKMVKLTAAVVK 132 Query: 130 VVSIPVTVKTRI-GIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 +PVTVKTR+ DD + E + + + V + IH R + Sbjct: 133 ATKLPVTVKTRLGWDDDTKNIEEVAERLQDV----GIQALTIHGRT--------RTQMYK 180 Query: 189 PPLDYPRVYQLKRD-FPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAA 245 D+ + ++K + H+ + NG I + E+A A + +DGVM+GR A P I Sbjct: 181 GHADWTLIGKVKNNPRIHIPIFGNGDICTPEQAIAAREKYGVDGVMIGRAAIGYPWIFNE 240 Query: 246 VDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 + + + + V V + + + + + RH +G+P +++ Sbjct: 241 IKHFMQTGEHLPPPSVLERVEVCKKHLQHSVQWKGDVVGILEMRRHYTNYLKGLPHIKEF 300 Query: 302 RRYLSENAHKAGAD 315 R+ L + A + Sbjct: 301 RQQLVTCSTLAAVE 314 >UniRef50_A7AWB5 Dihydrouridine synthase (Dus) domain containing protein n=1 Tax=Babesia bovis RepID=A7AWB5_BABBO Length = 362 Score = 280 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 142/319 (44%), Positives = 200/319 (62%), Gaps = 18/319 (5%) Query: 6 DVHWSGR------FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---- 55 D SGR +APMLD T R F+RL+++ L+TEM+ G++I+G D Sbjct: 5 DADISGRSHDRPLVQIAPMLDITYYEFRQFMRLITKRAQLWTEMMADGSLIYGDSDKVGS 64 Query: 56 YLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLM 114 L EHP+ LQLGG++ +L++ +A GY E NLNVGCPS RV G FGA LM Sbjct: 65 MLHCDANEHPIVLQLGGNNLDSLSKAGNIALGYGYTEFNLNVGCPSTRVSGKGCFGAALM 124 Query: 115 GNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK 174 +A LV VK +R + PVTVK R+G+D DSYEF+ DFI+TV+ +G C FI+HARK Sbjct: 125 NDAPLVGRIVKHLRSELGTPVTVKHRLGVDHNDSYEFVRDFISTVADQG-CTDFIVHARK 183 Query: 175 AWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL-QHMDGVMVG 233 AWL+G++P++NR IPPLD+ RVY+L ++FP+L +SINGGIKSLEE K L + + GVMVG Sbjct: 184 AWLNGINPRKNRSIPPLDHERVYRLCQEFPNLNISINGGIKSLEEIKYALSRGVYGVMVG 243 Query: 234 REAYQNPGILAAVDREIFGS---SDTDADPVAVVRAMYPYIERELSQGTYLG--HITRHM 288 R AY+NP L VD +I+G T ++ +I+ + S+ + + + + + Sbjct: 244 RMAYENPCGLVRVDTDIYGEATNPATCKTRRILLETYANFIDSQASRTSDMNVCMLVKPI 303 Query: 289 LGLFQGIPGARQWRRYLSE 307 LG F G G + +R+ LS+ Sbjct: 304 LGTFHGEVGTKIFRQALSD 322 >UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisella RepID=A0Q6L0_FRATN Length = 328 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 76/336 (22%), Positives = 138/336 (41%), Gaps = 32/336 (9%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 D+ +APM + D R + L+YTEMV+ A++ + L Sbjct: 7 DIEIENNVVLAPMAGFCDSAFRTICKEHGA-GLIYTEMVSNKAVVERNWETMEMLYMENS 65 Query: 63 EHPVALQLGGSDPAALAQCAK-LAEARGYDEINLNVGCPSDRVQNG-MFGACLMGNAQLV 120 E P+ +Q+ G+D + K +AE D +++N+GCP +V GA L+ + + Sbjct: 66 EKPLGIQIFGTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRI 125 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 + + A+ V PVTVK RIG DD++ + IH R Sbjct: 126 HEILTAVVKAVHKPVTVKMRIGWDDKNINAIE---VAKACEDAGVSAIAIHGRT------ 176 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQ 238 +E ++ + +++ + + NG + AKA ++H D VMVGR + Sbjct: 177 --REQMYTGKANWDIIRDVRKAV-DIVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRG 233 Query: 239 NPGILAAVDRE-IFGSSDTDADPVAVVRAMYPYIERELSQGT---YLGHITRHMLGLFQG 294 NP I + + G PV V + ++ R + T + I H Q Sbjct: 234 NPWIFRQIAKYLNTGELIPPPTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQD 293 Query: 295 IPGARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 +P ++++R L++ H+ + K++ + + Sbjct: 294 LPNSKEFRMKLNQLEHE--------QEIFKILEEYK 321 >UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family protein n=3 Tax=Clostridiales RepID=B0TBQ2_HELMI Length = 331 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 134/320 (41%), Gaps = 22/320 (6%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVA 67 APM TD+ R L+ R L+YTEM++ A+ + + L + E P+A Sbjct: 18 PPVVAAPMAGVTDKPFRTVLKEH-RCPLVYTEMISDKALTYANRNTMEILDITGEARPIA 76 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +Q+ GS+PA +A+ A++ EA G I++N+GCP+ ++ GACL+ L D +A+ Sbjct: 77 VQIFGSEPAVMAEAARIVEAAGASIIDINMGCPAPKIVRNGEGACLLKTPDLAVDIAEAV 136 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 V +PVTVK RIG + + G + +H R +E Sbjct: 137 VRAVQVPVTVKMRIGWSSGRIVA--PELAPRLEAVG-VQALTVHGRT--------REMFY 185 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAA 245 D+ + + R + + NG + ++A L VM+GR NP I + Sbjct: 186 SGQADWSVIAETVRQVS-IPVIGNGDVWEPDDALRMLVETGCAAVMIGRGCMGNPWIFSR 244 Query: 246 V----DREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 + + + + + +I + + + H+ +GI GA + Sbjct: 245 LVHWAETGEMPPPPSPEERINQALLHLEHIVALKGEERGVREMRGHLSWYLKGIRGASRL 304 Query: 302 RRYLSENAHKAGADINVLEH 321 R +++ + + EH Sbjct: 305 RAEINQAPDRESVVRLLTEH 324 >UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax=Cyanobacteria RepID=DUS1_SYNY3 Length = 355 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 138/324 (42%), Gaps = 22/324 (6%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK--GDYLAYSEEEH 64 + R +P+ TD R +R + +LYTEMV+ I H + + E+ Sbjct: 38 LTLHSRVLQSPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEIHHLRTLPQVMEIDPREN 97 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+++QL P +A+ A+ A A+G +++N+GCP +++ G+ L+ + V Sbjct: 98 PISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQPAVAEAIV 157 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 K + V +PVTVKTR+G DD + + +F + G +M +H R + Sbjct: 158 KTVVAAVDVPVTVKTRLGWDDGEIN--IVEFAQRLQDAG-AQMLTLHGRT--------RA 206 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGI 242 + + ++K+ + + NG I S+E A A L+ DGVM R + P + Sbjct: 207 QGYNGRARWQWIAKVKQAL-TIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYPFL 265 Query: 243 LAAVDREIFGSSD----TDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 + ++ T A+ + + + Q L +H+ + PGA Sbjct: 266 VGEIEHFFKTGEKRKAPTVAEKLTCAQEHLQMLWEYKGQRG-LFQARKHLAWYCKDFPGA 324 Query: 299 RQWRRYLSENAHKAGADINVLEHA 322 R L + + ++L+ A Sbjct: 325 AALREQLFQ-INSVQEGKDLLDQA 347 >UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJW0_9FIRM Length = 319 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 72/314 (22%), Positives = 127/314 (40%), Gaps = 22/314 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEEEHP 65 + +AP+ TD R R + L++TEM++ + L ++ +E P Sbjct: 8 LQNKVILAPLAGVTDSSFRILAREMGC-ALVFTEMISAKGAVCAPEQTLKIARFTAQERP 66 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + +QL GSDP A+ +L + D +++N+GCP +V G LM + K Sbjct: 67 IGIQLFGSDPEIFARATELCNGQAPDLLDINMGCPVKKVAGKGEGCALMRDPDKAYAITK 126 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+ D ++PVTVK R G DD + +G +H R + Sbjct: 127 AVCDAATMPVTVKMRKGWDDSEVNAVEVALAVQEAGA---AAVTVHGRT--------RAQ 175 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGIL 243 D+ + ++K + + NG I ++A+ LQ D VM+ R N ++ Sbjct: 176 GYSGRADWSVIARVKEAL-RVPVVGNGDIWEPQDAQRMLQQTGCDAVMLARGVLGNLWLI 234 Query: 244 AAVDRE-IFGSSDTDADPVAVVRAMYPYIERELSQ-GTYLG--HITRHMLGLFQGIPGAR 299 G + + VR +++ + + G Y+G + +HM +G+ GA Sbjct: 235 RRTVHYLETGELLPEPEMAERVRLACRHLKMVVDEKGEYMGVREMRKHMAWYLKGMRGAA 294 Query: 300 QWRRYLSENAHKAG 313 Q R + K Sbjct: 295 QVRNEIMRAKTKEE 308 >UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax=Bacilli RepID=DUS1_BACSU Length = 333 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 135/325 (41%), Gaps = 24/325 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 D+ R +APM + R ++ L+ EMV+ AI++ L E Sbjct: 6 DIQLKNRVVLAPMAGVCNSAFRLTVKEFGA-GLVCAEMVSDKAILYNNARTMGMLYIDER 64 Query: 63 EHPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E P++LQ+ G L + AK + D I++N+GCP ++ GA + + + Sbjct: 65 EKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDPDKIY 124 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 + V A+ D V+ PVTVK R+G D+ + F V G + +H R Sbjct: 125 EMVSAVVDAVNKPVTVKMRMGWDED--HIFAVKNAQAVERAGG-KAVALHGRT------- 174 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQN 239 + ++ + ++K+ + + NG +K+ ++AK L DGVM+GR A N Sbjct: 175 -RVQMYEGTANWDIIKEVKQSVS-IPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALGN 232 Query: 240 PGILAAVDREIFGSSDTD----ADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 P ++ + + + + +AV + + + + + +H +G+ Sbjct: 233 PWMIYRTVQYLETGKLKEEPQVREKMAVCKLHLDRLIDLKGENVAVREMRKHAAWYLKGV 292 Query: 296 PGARQWRRYLSENAHKAGADINVLE 320 G R ++ + + +L+ Sbjct: 293 KGNANVRNEIN-HCETREEFVQLLD 316 >UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7S213_NEMVE Length = 570 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 69/298 (23%), Positives = 122/298 (40%), Gaps = 18/298 (6%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA--- 58 EK + +S + +AP+ + R + + + EM ++ G+ A Sbjct: 209 QEKKRIDFSDKLYLAPLTTIGNLPFRRICKQYGAD-ITCGEMAMCTNLLQGQQSEWALVK 267 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLAE-ARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 E +QL G+ P + +CA+L + D I++N GCP D V N G+ LM Sbjct: 268 RHSSEDIFGVQLCGAFPDTMTKCAELLQKETDVDFIDINTGCPIDLVFNKGAGSALMERK 327 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 + V+ M+ V+ IP+TVK R GI D+ + + G +M IH R Sbjct: 328 GKLQQIVQGMKSVIDIPLTVKIRAGIHDKKYTWNAHKLVGNLRDWG-TDMVTIHGR---- 382 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGRE 235 +E R D+ + ++ + + + NG I S E+A H + + GVM+ R Sbjct: 383 ----SREQRYTKSADWDYISEVAKLASPMPVFGNGDILSFEDAMQHRKQAGVAGVMIARG 438 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 A P I + + + ++ + ++R +E S + R +L Sbjct: 439 AIIKPWIFTEIKEQRHW-DISSSERLDILRQFVNAGLEHWGSDTQGVEKTRRFLLEWL 495 >UniRef50_Q056Y8 TRNA-dihydrouridine synthase A n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q056Y8_BUCCC Length = 348 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 128/320 (40%), Positives = 195/320 (60%), Gaps = 5/320 (1%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE-EHPVA 67 +S +FSVAPM +TD+HC YF R L++ T LYTEM+T ++ K + + +P+A Sbjct: 27 YSNKFSVAPMFKYTDQHCLYFYRQLTKKTFLYTEMITIQKMLFSKKLFKKKQIKKNNPIA 86 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +QL G++P L+ CAK A G+ EINLN+GCPS + ++G FG LM N LV + +KA+ Sbjct: 87 IQLAGNNPLFLSLCAKKAYFLGFKEINLNIGCPSKKAKSGNFGIYLMNNPILVYNLIKAI 146 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 V I +++K R+G ++ +Y FL +FI VS C +IIHAR A L SPK+NR Sbjct: 147 YLTVPIQISIKIRLGTNENKNYRFLKNFIQLVSKNNYCIKYIIHARIANLQINSPKKNRN 206 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 247 IP L+Y VY++K+DFPHL + INGGIK++ E HL+++DGVM+GRE Y+NP L +D Sbjct: 207 IPLLNYSYVYKIKKDFPHLIIIINGGIKTINEINEHLKNVDGVMMGREIYKNPLFLRKID 266 Query: 248 REIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 ++IF ++ M YI++++ +G I +HML +F +P A++W+ L + Sbjct: 267 KKIFFQKKQIKI-KKFIKKMSNYIKKKIIKGVPAIKIIKHMLNIFYKLPQAKKWKHELIQ 325 Query: 308 ---NAHKAGADINVLEHALK 324 ++ N + Sbjct: 326 KTIYKNQIDDIFNKIHKLFD 345 >UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8P9_9CHLA Length = 342 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 77/313 (24%), Positives = 131/313 (41%), Gaps = 20/313 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEE 62 ++ AP+ +D R S L+Y EMV A++ L + ++ Sbjct: 11 NLTLPNPVFYAPLAGCSDFPFRQMSARYSP-GLMYCEMVKMDALVRHDPNTFRMLDFDKD 69 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 HP+ QL GS P A+ AK+ E G+D ++LN GCP D+V G+ L+ N L+ + Sbjct: 70 MHPIGGQLCGSKPQLAAKAAKIIEDLGFDVVDLNCGCPVDKVTKDGSGSGLLKNPLLIGE 129 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 + M V IPVTVK R G DD++ + I ++ K + IH R Sbjct: 130 ILSEMVAAVKIPVTVKIRAGWDDEN---LCAEEITQIAEKAGAKAITIHGRT-------- 178 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNP 240 ++ P ++ + K+ H+ + NG + AK ++ D V+V R P Sbjct: 179 RQQAYRGPANWDHIKASKQVAKHIKVIGNGDVMDPTSAKRMFEYTGCDAVLVARGTMGQP 238 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYI---ERELSQGTYLGHITRHMLGLFQGIPG 297 I + + G + P +A+Y + ER + + + R + G Sbjct: 239 WIAQDILNYLQGGTIRVHTPEDCRQALYEHFLCTERYYNPRQVVIEMRRVGCWYIKSSGG 298 Query: 298 ARQWRRYLSENAH 310 R++R +S + Sbjct: 299 TREFRGLISRASS 311 >UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3T5_NATTJ Length = 327 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 73/326 (22%), Positives = 138/326 (42%), Gaps = 24/326 (7%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVALQ 69 VAPM TD R L S L+ EMV+ +++G + + + + + Q Sbjct: 15 IIVAPMAGVTDYPYRRILAKFSP-GLICGEMVSAKGMVYGNKKTEEMVIHHNQGVHYSQQ 73 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 + GSDP +A A E G D I++N+GCP+ ++ G+ L+ L + V+ + + Sbjct: 74 IFGSDPKVMADAAVKLENLGVDSIDVNMGCPAPKIVKNGEGSALLKKPHLAQEIVREIVN 133 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 V++PVTVK R G D + S G + +H R E + Sbjct: 134 SVNLPVTVKIRKGFDRKSSDPLELALRLQEVG---IKALAVHGRTC--------EQQYSG 182 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAVD 247 D+ V +LK ++ + + NG I S E+A + L+ DG+M+GR NP ++ Sbjct: 183 KADWEVVAKLK-NYLDIPVIGNGDIFSSEDAVSALEMTACDGIMLGRGLMGNPWLIEQTK 241 Query: 248 REIFGSSDTD-ADPVAVVRAMYPYIE---RELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 + + + + M + E + + + + +H+ + +PG+ + Sbjct: 242 GMLIKDEKIESPEIHEIKNEMKSHFENAIKYYGESKGIAEMRKHISWYLKSLPGSTSIKD 301 Query: 304 YLSE--NAHKAGADINVLEHALKLVA 327 + + ++ +N AL+ + Sbjct: 302 EVMRLTDVNQIWFSLNEYFQALEKKS 327 >UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRF1_BDEBA Length = 337 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 21/325 (6%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEEEHPVA 67 F +APM TD R F++ L +++ TE+V+ I + L + E + P+ Sbjct: 10 NPFVLAPMAGITDHAFRTFIKKLDA-SVVVTELVSASGIEYKSDRTLKLMSFDESQRPIG 68 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +QL G +P +A+ A++AEA G D ++LN GCP +V G+ ++ + V V + Sbjct: 69 IQLFGEEPEIVARAAQVAEADGCDFVDLNFGCPVPKVVKKGAGSAILKDPAAVQKMVSTV 128 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + + IP+T+K R G D I ++ IH R + Sbjct: 129 KAAIKIPLTIKIRTGWDANSRNATE---ICNIAYNEGVSWVAIHGRT--------RAQSY 177 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILAA 245 D+ + +K + + + NG I + +A LQ DGVM+GR +NP I Sbjct: 178 TGLADWDFIADVKAN-TKIPILGNGDILTPRQANLRLQQSGCDGVMIGRGCLKNPFIFMD 236 Query: 246 VDREIFGSSDTDADP--VAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 G D V++ + + I + + + G GA Q+R+ Sbjct: 237 ALSLWRGEPIKDVKRDYVSLFQGLQKEIVAHCDEHITGIQLRKFAAWFSTGYSGAAQFRK 296 Query: 304 YLSENAHKAGADINVLEHALKLVAD 328 L ++ + + + + Sbjct: 297 NLFQSKSN-DEIMALANEFFASIGN 320 >UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes RepID=A9NE09_ACHLI Length = 336 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 81/318 (25%), Positives = 132/318 (41%), Gaps = 23/318 (7%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY---SEEEHPVA 67 + +APM ++ R R L +++ EMV+ AI L + EE P A Sbjct: 12 NKLILAPMAGVSNHPFRLMARQLGA-GVVFAEMVSDKAIFFQNPKTLQMLYMTVEEKPAA 70 Query: 68 LQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNG-MFGACLMGNAQLVADCVK 125 Q+ GSD + + A + D I++N+GCP +V G GA LM + Q + D VK Sbjct: 71 QQIFGSDLETMVEAAMFIDKNSNCDFIDINMGCPVPKVAIGAQAGASLMKDPQKIYDIVK 130 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+++ VS PVTVK R G D + + + K + +HAR + Sbjct: 131 AIKEKVSKPVTVKIRSGWDSESVNAVE---VAKMIEKAGASLITVHART--------RAQ 179 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGIL 243 D + +K + + NG I + AK L++ D VM+GR + NP I Sbjct: 180 GYSGEPDLDVIKAVKEAVS-IPVIGNGNIVDGKSAKHMLEYTGCDAVMIGRASLGNPWIF 238 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIE---RELSQGTYLGHITRHMLGLFQGIPGARQ 300 ++ + G V M + + + + T + H +G+P A Q Sbjct: 239 REINAYLNGEETPVRTYEEVKTLMIRHFDDLAKLKGEHTACLEMRSHGPWYLKGLPKASQ 298 Query: 301 WRRYLSENAHKAGADINV 318 R L+ ++A N+ Sbjct: 299 VRAKLARTTNRAEYMENL 316 >UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C2KYD0_9FIRM Length = 344 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 75/314 (23%), Positives = 124/314 (39%), Gaps = 23/314 (7%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSE 61 D G +APM TD R + + +L +TEMV+ AI +G L + Sbjct: 33 KDCELPGNILMAPMAGVTDLPYRILCKEMGL-SLSFTEMVSAKAIYYGNQNTDSLLVHKG 91 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E V+ QL GSDPA +A+ A E +D I++N+GCP +V G+ LM N L Sbjct: 92 EPGLVSAQLFGSDPALMAEMACRIEE-DFDGIDVNMGCPVPKVVRNQEGSALMTNLPLAE 150 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 + M + P+TVK RIG D ++ IH R Sbjct: 151 QVLSTMAKALKKPLTVKFRIGFTDD---AINVVEFAKMAEASGVASVTIHGRT------- 200 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQN 239 +E ++ + + K + + NG I E+A A L +DGV + R N Sbjct: 201 -REQYYRGKANWQYIKEAKEAV-KIPVFGNGDIFQEEDALAMLLSTGVDGVALARGIQGN 258 Query: 240 PGILAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 P ++ A + + ++ + + L + +H+ +G+ Sbjct: 259 PFLIRACVSLLSEGKKLPPVSLSERKEMMLRHLKLMVEIKGEHLALLEMRKHLSWYMEGL 318 Query: 296 PGARQWRRYLSENA 309 A +WR+ ++ Sbjct: 319 ENAARWRQRVNTEN 332 >UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGI4_DESAA Length = 332 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 70/338 (20%), Positives = 140/338 (41%), Gaps = 22/338 (6%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYL 57 M + + AP+ T+ R + L+ +EM+++ +I + + + Sbjct: 1 MLKIASLKLDNPLVCAPLAGVTNLPLRLMAKRHGA-ALVCSEMISSNGLIRYQKKTMELM 59 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 A EEE P+++Q+ GSDP LA A++ G D +++N GC +V G G+ LM + Sbjct: 60 ASKEEERPLSIQIFGSDPGVLADSARIVAEHGADIVDINFGCSVKKVLKGGAGSALMADL 119 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 +K +R +S+P T+K R G D ++ + +H R A Sbjct: 120 PRAEKILKEVRKAISLPFTIKMRSGWDASGDEAMAL---GRIAQDAGVDAVALHPRTA-- 174 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGRE 235 + D+ ++ +LK++ + + NG + E ++ DGVM+GR Sbjct: 175 ------KQGFSGHSDWSQIKRLKQEL-TIPVIGNGDVTKPEHVLEMMEQTGCDGVMIGRA 227 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIE---RELSQGTYLGHITRHMLGLF 292 P I + + D + ++ Y++ L + + + Sbjct: 228 VLYAPWIFRQALCLLENRPMEEIDLDDRKKVLFDYLDDTMDYLGEEHGCRVMRSRLAWFV 287 Query: 293 QGIPGARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 +G+P A ++R ++ A K A +++E + + +R Sbjct: 288 KGLPNAAKFRGEITRIASKEQAR-DLIEEFFRSIEKRR 324 >UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4Z7_ACIC5 Length = 398 Score = 274 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 156/373 (41%), Gaps = 60/373 (16%) Query: 1 MPEKTDVHWSGRF---------SVAPMLDWTDRHCRYFLR-------------------- 31 MPE V S +APM TD R F+R Sbjct: 13 MPEGVRVPASMDIGGVVVAPATVLAPMAGVTDTVFRRFIRNASLFAEGGAGAANVDREVT 72 Query: 32 -LLSRNTLLYTEMVTTGAIIH----GKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAE 86 S L+ TE + + + YL + E+EHP+A QL GS+P LA+ A++ E Sbjct: 73 NQQSGCGLIMTEFTSADGLSKMRESKRKRYLTFYEDEHPIAAQLFGSNPETLAEGARIVE 132 Query: 87 ARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQ 146 G+D ++LN+GCP+ RV G+ L+ + L+A +A+R V IP TVK R+G +DQ Sbjct: 133 DTGFDMVDLNLGCPAKRVVACNGGSGLLRDLPLIAKIFEAVRGAVKIPFTVKFRLGWNDQ 192 Query: 147 DSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHL 206 +C + ++ + +HAR +E + + ++K D + Sbjct: 193 ---HIICVPLARLAEESGLNAVSLHART--------REQGYSGQARWEHIAEVK-DAVRI 240 Query: 207 TMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAVDREIFGS---SDTDADPV 261 + NG +++ E+A A + DGVM+GR A NP I + + ++AD Sbjct: 241 PVIGNGDVRTPEDACALVAKTGCDGVMIGRAAPANPWIFRQIAQYTATGRYDEPSEADRY 300 Query: 262 AVVRAMYPYI-----ERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADI 316 ++R + + E E + G + + G+PG R+ + E A Sbjct: 301 QMIRTYFEMLLDEGREDEHASRAAEGKMKQFASWFTHGVPGGAGLRKSIYE----AKTGP 356 Query: 317 NVLEHALKLVADK 329 +L+ + + Sbjct: 357 KILDAVERFFETR 369 >UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicutes RepID=Q6F288_MESFL Length = 325 Score = 274 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 137/337 (40%), Gaps = 30/337 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 +V G+ PM ++ R + + L+ EMV+ + H LA ++ Sbjct: 5 NVEIKGKLVQGPMAGVSNPPFRLISKEKGAD-LVCAEMVSVEGMTHNNKKTFSMLAVEKK 63 Query: 63 EHPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRV-QNGMFGACLMGNAQLV 120 EHP+++Q+ G+D + K E D I+LN+GCP+ +V G+ L+ +L+ Sbjct: 64 EHPMSMQIFGNDVESFIVATKWIDENVDCDIIDLNIGCPAPKVAVRSASGSSLLKTPELI 123 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 D VKA+ + S PVT K R+G D + ++ + K +H R Sbjct: 124 YDIVKAVVENTSKPVTAKIRLGWDKESVNAVE---VSKLIEKAGASGITVHGRT------ 174 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQ 238 + D+ ++ ++K ++ + NG + AKA L+ DGVM+ R Sbjct: 175 --RSEFYSGHADWEKIKEVKEAV-NIPVIGNGDVIDGPSAKAMLELTGCDGVMISRGCQG 231 Query: 239 NPGILAAVDREIFGSSDTDAD-----PVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 NP I + + + D V++ I+ + +G+ + +H+ F Sbjct: 232 NPWIFREIAHFLETGEELDKPSFAEWKETVLKHAKMLIDYKQDEGSAIREFRKHLTWYFA 291 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 +P L E A+K IN ++ + Sbjct: 292 ALPKTEIL-NQLKEEANK----INTFSDLENIIEKYK 323 >UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKE4_DESAH Length = 330 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 82/333 (24%), Positives = 138/333 (41%), Gaps = 30/333 (9%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 D+ GR +AP+ T+ R + TL+ +EMV+ + L Sbjct: 5 DLEIRGRTVLAPLAGITNLPFRIIAKGCGC-TLVCSEMVSAKGLEFNSEKTVQLLRTDAC 63 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E PV++Q+ G++ ++A A+ R D I++N GC +V G LM + Sbjct: 64 ERPVSVQIFGAEALSMANAARWIAERNVADIIDINFGCSVKKVARTGAGVALMKDMDNAR 123 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 ++A+R VS+P T+K R G D S F I ++ + IH R A Sbjct: 124 AIIRAVRRAVSMPFTIKIRSGWDSSASQAFD---IARMAEDNGVDAIAIHPRTA------ 174 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQN 239 D+ + +LK + + + NG I + E+ A +Q DGVMVGR A N Sbjct: 175 --AQGFRGRADWSMIARLK-EMLTIPVIGNGDITTPEQGVAMIQETGCDGVMVGRAAMGN 231 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIERE---LSQGTYLGHITRHMLGLFQGIP 296 P I ++ + G + + P+ + + M +E L + + + +G Sbjct: 232 PFIFGGIEALLRGEAWNEPSPMEIFQIMEEMVESHVAYLGERPACRMMRSRLAWFVKGFA 291 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVADK 329 GA +RR L+ I L+ A+ L+ Sbjct: 292 GASVFRRELT--------GIETLDQAMALIRRY 316 >UniRef50_B2RZT4 NIFR3-like protein n=23 Tax=Borrelia RepID=B2RZT4_BORHD Length = 335 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 109/324 (33%), Positives = 181/324 (55%), Gaps = 10/324 (3%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHPVA 67 + + SVAPM+ TD H RY +RLLS+ LYT M++ +II G + + + P+A Sbjct: 3 INRKISVAPMVAITDEHFRYMIRLLSKKVTLYTPMISAKSIIMGNLNKVVKQTPTDSPIA 62 Query: 68 LQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q+ S A+ ++ E + +DE NLNVGCPS +VQN +GACLM V +KA Sbjct: 63 IQIATSCENDAAKAIEILENKFNFDEYNLNVGCPSSKVQNANYGACLMQTPTQVGKILKA 122 Query: 127 MRDVVSIPVTVKTRIGIDD------QDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 M+ + PV++K RIGI + +++Y L F+ + + E + F +HAR A L+G Sbjct: 123 MKKNTNKPVSIKHRIGIRNNKREYHEENYTELQQFVEKI-MEYEIKNFTVHARIAILNGY 181 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNP 240 SPK+N+ IP L + VY+LK++ ++ + +NGGIKS + K HL ++D VM+GR ++P Sbjct: 182 SPKDNQNIPKLRHDFVYRLKQEHKNIFIEVNGGIKSSDHIKTHLSYVDSVMIGRAVAKDP 241 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 ++A + RE + ++ M YI +E + + I +H++ + A + Sbjct: 242 YLIAKISREFLEEKEKIPTREEILLKMVEYI-KEYDECLSISTILKHIMSIVFAKENACK 300 Query: 301 WRRYLSENAHKAGADINVLEHALK 324 +R+ LS K + +L A++ Sbjct: 301 FRQTLSAPFPKNLKNHEILLSAIE 324 >UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3V7_GEMAT Length = 349 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 70/335 (20%), Positives = 139/335 (41%), Gaps = 25/335 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEE 63 V S +APM ++ R + ++ TE ++ I L ++ EE Sbjct: 10 VPHSVPLYLAPMAGVSESPFRRLCHAHGAD-VVVTEFLSAEGIRRENEATISKLRFAPEE 68 Query: 64 HPVALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 P+ +Q+ GS+P+A+A A L D +++N GCP +V G+ + + LV + Sbjct: 69 RPIGVQIFGSEPSAMADAAALVTDMFSPDFVDINFGCPVKKVVRRNGGSGCLKDLDLVEE 128 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 ++A+ +PVTVKTR G +++ +G ++F +HAR Sbjct: 129 IIRAVSKATPLPVTVKTRSGWNEEMRDPVGIALRMQDAGA---KVFALHART-------- 177 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNP 240 + ++ + ++ + + NG IK+ +AK L H DG+M+GR +Y P Sbjct: 178 RTQMYSGSANWDEIARVAEAL-DIPVLGNGDIKTALDAKRMLDHTKADGIMIGRGSYGQP 236 Query: 241 GILAAVDREIFGSSDTD----ADPVAVVRAMYPYIE-RELSQGTYLGHITRHMLGLFQGI 295 + I G+ + + A+ ++ E+ +H+ +G+ Sbjct: 237 WVFKQTRALIDGTPVPETPGVQERFAIALDHARMVQGYEVDAIGAALEFRKHLGWYVKGL 296 Query: 296 PGARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 P + + R L + A + + + L+ + + Sbjct: 297 PNSAELRAKLHQVRDFAEVE-TIFTNYLEFYEEYK 330 >UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroidetes RepID=A0M6M9_GRAFK Length = 330 Score = 269 bits (689), Expect = 8e-71, Method: Composition-based stats. Identities = 71/300 (23%), Positives = 126/300 (42%), Gaps = 22/300 (7%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEHPVALQ 69 +APM D +D R + + ++YTE +++ +I L E+E PV +Q Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGAD-VVYTEFISSEGLIREAAKSTMKLDIYEKERPVGIQ 72 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 + G++ ++ Q ++ E G D I++N GCP +V + GA ++ + L+ +AM Sbjct: 73 IFGANLESMLQSVEIVEKSGPDIIDINFGCPVKKVVSKGAGAGILKDIDLMVSLTEAMVK 132 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 S+P+TVKTR+G D + + + G C+ IH R + Sbjct: 133 NTSLPITVKTRLGWDHDSI--KIVEVAERLQDVG-CKAISIHGRT--------RAQMYKG 181 Query: 190 PLDYPRVYQLKRDFP-HLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAV 246 D+ + ++K + H+ + NG + S E+A +DG M+GR + P V Sbjct: 182 EADWAPIAEVKNNPRMHIPVFGNGDVDSPEKAMEMRDNFGLDGAMIGRASIGYPWFFREV 241 Query: 247 DREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 T + V R + + RH F+GIP +++R Sbjct: 242 KHYFETGKHLAPPTLEERVDAARRHLQMAIDWKGERLGVFETRRHYTNYFKGIPHFKEYR 301 >UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteurellaceae RepID=DUSB_HAEIN Length = 330 Score = 269 bits (689), Expect = 9e-71, Method: Composition-based stats. Identities = 80/333 (24%), Positives = 142/333 (42%), Gaps = 25/333 (7%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEH 64 R +APM TD+ R L ++EM++T + LA+SE+ Sbjct: 7 QLRNRVLLAPMAGITDQPFRRLCAYYGA-GLTFSEMMSTNPQVWHTEKSKLRLAHSEDLG 65 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 A+Q+ GSDP +AQ A + G I++N+GCP+ +V + G+ L+ LV + Sbjct: 66 LNAVQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSALLQFPDLVEKIL 125 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 + + V++PVT+K R G D + C I ++ + + +H R + Sbjct: 126 REVVSAVNVPVTLKIRTGWDKSNRN---CVQIGKIAEQCGIQALTVHGRT--------RA 174 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGI 242 +Y + +K+ + + NG I S +AK L + D +M+GR A NP + Sbjct: 175 CLFEGEAEYDNIKAVKQAIA-IPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWL 233 Query: 243 LAAVDREIFGSSDTDADPV-----AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 AV+ I +S + + ++R + + Q Y +H+ QGI Sbjct: 234 FQAVENLIEHNSISQMPSLKEKCGQILRHIQELHQFYGEQKGY-RIARKHVAWYLQGIQP 292 Query: 298 ARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 +++ + + VLE L+ DK+ Sbjct: 293 DSVFKQTFN-AISDPKEQLIVLEDFFNLILDKK 324 >UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3 n=3 Tax=Deltaproteobacteria RepID=Q1NXZ7_9DELT Length = 313 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 127/315 (40%), Gaps = 24/315 (7%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVA 67 AP+ ++D R R L Y+EM++ ++ + + LA + E P+ Sbjct: 13 PPLVAAPLAGYSDLPFRLLCREYGA-GLCYSEMLSCHGLVRRQPATIEMLATTAAERPLL 71 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +QL G++P + + A + D I++N+GCP +V GA LM + +L A A+ Sbjct: 72 MQLFGAEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKGAGAALMRDPELAAAITGAV 131 Query: 128 RDVV-SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 +PVTVK R G + + DF + G IHAR W G + + Sbjct: 132 TAAAGDLPVTVKIRSGWNHKQINA--PDFARLLVAHG-AAAVTIHART-WSDGFTGR--- 184 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILA 244 D+ + +KR + + NG I S E+A A + DGVM+GR A P + Sbjct: 185 ----ADWAVIAAVKRAVS-VPVIGNGDIGSYEQALAMMAATGCDGVMIGRGALGAPWVFT 239 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRY 304 + A +A R I + + F+ IPG + RR Sbjct: 240 ----PGAEQNPPLAQRLAAARRHLELIRHWRPADNP-ARVRNQLGRYFKKIPGGARLRRQ 294 Query: 305 LSENAHKAGADINVL 319 + ++ +L Sbjct: 295 IYDHNGSIDQLEQLL 309 >UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepID=Q2RZL4_SALRD Length = 443 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 78/333 (23%), Positives = 136/333 (40%), Gaps = 27/333 (8%) Query: 7 VHWSGR-FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEE 62 + + R +APM D +D R + + ++YTE V++ ++ + L +E Sbjct: 70 LDFDDRPLFLAPMEDVSDPPFRILCKRYGAD-MMYTEFVSSAGLLREQEHEHQKLEIFDE 128 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 E P+ +Q+ G + + +A G D I++N GCP ++ GA ++ N + + Sbjct: 129 ERPIGIQVWGGGIDEVRNATPMVDAAGPDVIDINFGCPVRKIVQKDGGAGVLRNLDKMRN 188 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 A+ + + PVTVKTR+G DD + + D + G +HAR Sbjct: 189 ITAAVMEEATRPVTVKTRLGWDDDSIH--IVDVARMLEDMG-VAALTVHART-------- 237 Query: 183 KENREIPPLDYPRVYQLKRDFP-HLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQN 239 +E + + + +K + + NG E +A + DGVM+GR A N Sbjct: 238 REQKYKGDARWEWLRTIKEEGTRDMPFIGNGDALDPEAIEAMFEETGVDGVMLGRGALGN 297 Query: 240 PGILAAVDREI-FGSSDTDADPVAVVRAMYPYI---ERELSQGTYLGHITRHMLGLFQGI 295 P I + G D V+ + ++ L + T + + ++ F+G Sbjct: 298 PWIFERAKTYMETGELPPPPDWEERVQVVAEHLSLKCEWLGERTGVMEMRKNYSSYFKGF 357 Query: 296 PGARQWRRYLSENAHKAGADINVLEHALKLVAD 328 A R L + KAG VLE L D Sbjct: 358 RNASTLRHELMQPETKAG----VLEVMLNFKPD 386 >UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S217_FINM2 Length = 305 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 131/307 (42%), Gaps = 25/307 (8%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEE 63 ++ + +AP+ TD R L L +TEM++ + + L E Sbjct: 1 MNLNSNLFLAPLAGVTDIPFRILCGELGA-GLCFTEMISAKGLYYDDKKTKKLLDTDPRE 59 Query: 64 HPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 ++Q+ G +P +A + E + I++N+GCP+ ++ G+ LMG+ L D Sbjct: 60 KSTSVQIFGHEPEIIAYATRFLTENYNFKSIDINMGCPAPKIFKNGDGSALMGDLNLAED 119 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 ++A ++ +PV+VK R+GID+ + + + + + +HAR Sbjct: 120 VIRACKNNTDLPVSVKFRLGIDENSMNYM---QLAQICERLKVDYITLHART-------- 168 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNP 240 ++ D+ + ++ + + + NG + E+ + ++++ DGV++ R A QNP Sbjct: 169 RKMFYSGEADWLHIKRVVENV-DIPVFGNGDCFTKEDIRKNMEYSNCDGVLLARGAMQNP 227 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 I + + + + + ++ + + + +H+ +G + + Sbjct: 228 FIFSD------DENKSKEEVIDTIKKHMQLKLEFYEERRAILEMRKHIQWYLKGFRNSNK 281 Query: 301 WRRYLSE 307 + +++ Sbjct: 282 VKNKINQ 288 >UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=2 Tax=Planctomycetaceae RepID=A6CBK4_9PLAN Length = 365 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 70/324 (21%), Positives = 133/324 (41%), Gaps = 22/324 (6%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEEE 63 + R+ ++P+ +T+ R +R L L T++V ++ G L E+ Sbjct: 24 LQLESRYLLSPLAGYTNLPFRRIVRELGGVGLATTDLVNARGLLEGSEKTLQLTQTCPED 83 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P A+Q+ GS+P + A+L E+RG I++N+GCP +R+ G GA +M Sbjct: 84 SPFAVQIFGSEPQQMKDAAQLLESRGVHSIDINMGCPVNRIVKGGAGASMMCRPSDTVSL 143 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 V+ + + V IPV+VK R+G DD E F + K IH R + Sbjct: 144 VQTVVEAVKIPVSVKMRLGWDDS---ELSAPFFSREFEKVGVVAVAIHGRT--------R 192 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPG 241 E +++ + ++ + + NG + ++ EA L+ GV +GR A NP Sbjct: 193 EQGFRGVVNHDGIRRVVEAVDSIPVIGNGDVTNVAEADFMLKTTGCAGVSIGRGALANPW 252 Query: 242 ILAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 I + + + D + ++ + Y+ ++ + + + + Sbjct: 253 IFRQLVQWEQTGTYDPPGNFDDRLELLLRQFRYLLEMTTEKRAISMFRKMGHWYLKSMRV 312 Query: 298 ARQWRRY--LSENAHKAGADINVL 319 R L+ N + G + + Sbjct: 313 KPAMRHEFQLASNLDEFGQAVRKI 336 >UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=Q8PX79_METMA Length = 323 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 122/309 (39%), Gaps = 23/309 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEE 62 SG +APM D T+ R R + L YTEM+ A+++ SEE Sbjct: 10 RTELSGNLLLAPMADVTNLAFRLLCRRYGAD-LTYTEMINVDALLNESRKSFIKGLSSEE 68 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 + P +QL G P L + A E + I++N+GCP+ + G+ L+ + +LV Sbjct: 69 DRPFGVQLVGGCPDKLKRAALFIEEEYRPEIIDVNMGCPARCITGAGCGSALLNSPELVY 128 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 + + + + PV+ K R+ ++ + E I + K +H R A Sbjct: 129 SIILELTESLDTPVSAKIRLLGREEKTLE-----IARLIEKAGASAVTVHGRTA------ 177 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA--HLQHMDGVMVGREAYQN 239 + + +K + + + NG +K E A+ L DG+M+GR A N Sbjct: 178 --AQMYSGNSNLEGIRAVKNELS-IPVIANGDVKDEESAERTLELTGCDGLMIGRAAMGN 234 Query: 240 PGILAAVDREIFGSSDTDAD-PVAVVRAMYPYIERELSQGTYLG-HITRHMLGLFQGIPG 297 P I + + AD P + YI ++ H +G+ G Sbjct: 235 PFIFKKIRHYLETGEKLGADKPFRQLEDFNSYISLLEEHNLLSSINLRMHAHWFTKGLRG 294 Query: 298 ARQWRRYLS 306 +R R ++ Sbjct: 295 SRHVREKIN 303 >UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like (S. cerevisiae) n=2 Tax=Taeniopygia guttata RepID=UPI000194DF67 Length = 718 Score = 266 bits (681), Expect = 7e-70, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 117/296 (39%), Gaps = 19/296 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE 62 EK + G+ +AP+ + R + + + EM ++ G+ A + Sbjct: 365 EKKKLEIQGKLYLAPLTTCGNLPFRRICKRFGAD-VTCGEMAVCTNLLQGQSSEWALLKR 423 Query: 63 ---EHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +QL G+ P + +CA+L D +++NVGCP D V G LM + Sbjct: 424 HHTEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMTRSN 483 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 V+ M V+ +PVTVK R G+ Q+ I + G M +H R Sbjct: 484 KFEQIVRGMNSVLDVPVTVKIRTGV--QEKVNVAHKLIPRIREWG-ASMVTLHGR----- 535 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ-HMDGVMVGREAY 237 +E R D+ + + R + + NG I S E+A +Q + G+M+ R A Sbjct: 536 ---SREQRYTRSADWHYIAECARLASPMPLFGNGDILSYEDANRAMQMGVSGIMIARGAL 592 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P + + + + ++ +++ Y +E S + + +L Sbjct: 593 IKPWLFTEIKEQRHW-DISSSERFEILKDFTNYGLEHWGSDTQGVEKTRKFLLEWL 647 >UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJZ5_DESPS Length = 328 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 75/308 (24%), Positives = 125/308 (40%), Gaps = 23/308 (7%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEH 64 +S F +AP+ +TD R + +EM++ + + + + LA EE Sbjct: 8 QFSSPFVLAPLAGYTDLSFRLLCHQFGAD-YTVSEMISCHGLFYNQQRTLEMLASLPEER 66 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 PV+ QL G++P +A+ + D I++N+GCP +V GA LM +L D + Sbjct: 67 PVSFQLFGAEPDIMAKATLILNDFQPDMIDINMGCPVRKVTKKGAGAALMSTPELAYDVI 126 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +++ D IPVTVK R G+ S E ++ + +H R + Sbjct: 127 RSVVDNTDIPVTVKFRAGV---SSTELNGVEFGLMTERAGAAAVAVHGRT--------RA 175 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGI 242 D + ++K + + NG I S ++ + DGVMVGR A NP + Sbjct: 176 QAFSGVADRGIIKEVKEALS-IPVIGNGDILSYQDGLDMMAETGCDGVMVGRGALGNPWV 234 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 + G A +ER LG I HM F+ +PG+ + R Sbjct: 235 F-----QASGKPANIHGLAAGALQHLLLMERFNPVERVLGLIKNHMSKYFKDMPGSSRLR 289 Query: 303 RYLSENAH 310 + + Sbjct: 290 TAIFTASS 297 >UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMP9_9FIRM Length = 330 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 137/321 (42%), Gaps = 22/321 (6%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLA 58 P ++ G +APM +D R R + L EMV+ + + D L Sbjct: 4 PRIGNIQLDGFALLAPMAGVSDLAYRVIARKMGA-ALTTAEMVSAKGLYYHNEKTKDMLK 62 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 +EEEHPV+LQL GSDPA +A AK+ E G D +++N+GCP +V G+ LM N Sbjct: 63 IAEEEHPVSLQLFGSDPAVMALGAKVMEKAGADIVDINMGCPMQKVVKNGDGSALMKNVT 122 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 L A+ + A+ V IPVT+K R+G +G +H R Sbjct: 123 LAAEIISAVTAAVKIPVTIKMRLGWSRDTINAVELAMAAESAGA---AAITVHGRT---- 175 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREA 236 +E+ + D+ + ++ D + + NG + AKA ++ V +GR A Sbjct: 176 ----REDFYMGTADWREIKKVV-DAVRIPVIGNGDVGDGPAAKALMEETGCAAVAIGRAA 230 Query: 237 YQNPGILAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 + NP + AV+ + + + +A+ R + E + + + H F Sbjct: 231 WGNPWVFGAVNTYLETGEILPGPSWEERLAMARKHLHGLCVEKGERIAVREMRAHASRYF 290 Query: 293 QGIPGARQWRRYLSENAHKAG 313 G+P A RR + + + Sbjct: 291 HGLPKATVLRREIMKALTEEE 311 >UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3Q8_9BACT Length = 341 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 127/315 (40%), Gaps = 22/315 (6%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSE 61 ++ G +APM ++D R R ++ YTE+V+ I+ L + E Sbjct: 27 RNIPVYGELILAPMAGFSDMPYRLICRRFG-MSMSYTEVVSVSGIVWNNKKTFKLLDFKE 85 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 EE PV Q+ G+D + + K E G D I++N+GC + GA ++ + ++ Sbjct: 86 EERPVTFQVVGNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGKGAGAGMLKHPSKIS 145 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 + +S+PVT K R+G D + + + + + +H R Sbjct: 146 KMFNNLTGSLSVPVTGKIRLGWDHKTRNYIE---VARILEENGASLIAVHGRT------- 195 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQN 239 + D+ + ++K+ + + NG ++S+ + DGVM+GR A + Sbjct: 196 -RSQYFSGAADWDAIAEVKQSV-KIPVIANGDVRSVADIAEIKKRTACDGVMIGRAAIGH 253 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGAR 299 P I DRE S+ + ++R ++ + +H + G+P A Sbjct: 254 PWIFRYKDRENISGSEK----IEMIRYHLDCMKEYYGHAIGVVLFRKHAVKYIVGLPKAT 309 Query: 300 QWRRYLSENAHKAGA 314 + R Y+ + Sbjct: 310 ELRPYIVRSKSAEDI 324 >UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=Actinobacteria (class) RepID=DUS_MYCTU Length = 389 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 121/319 (37%), Gaps = 30/319 (9%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLL------SRNTLLYTEMVTTGAIIHGKGDYL--- 57 + + +APM T+ R R L + + L EMVT A+I + Sbjct: 18 IELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMT 77 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGN 116 +S +E P +LQL DP A++ G D I++N GCP +V GA L Sbjct: 78 TFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFK 137 Query: 117 AQLVADCVKAMRDV---VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR 173 +L V A IPVTVK RIGIDD ++ +HAR Sbjct: 138 RRLFGQIVAAAVRATEGTDIPVTVKFRIGIDD---AHHTHLDAGRIAEAEGAAAVALHAR 194 Query: 174 KAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVM 231 A R D+ ++ +LK+ + + NG I +A A + DGV+ Sbjct: 195 TA--------AQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVV 246 Query: 232 VGREAYQNPGILAAVDREIFGSSDTDADPV----AVVRAMYPYIERELSQGTYLGHITRH 287 +GR P + A + GS + ++R + + + I +H Sbjct: 247 IGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKH 306 Query: 288 MLGLFQGIPGARQWRRYLS 306 + G P RR L+ Sbjct: 307 IAWYLHGFPAGSALRRALA 325 >UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacteridae RepID=D2NNX0_9MICC Length = 442 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 70/316 (22%), Positives = 120/316 (37%), Gaps = 26/316 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEE 62 + +APM T++ R L TEMVT A++ K + + + + Sbjct: 71 KLTVDTPVVLAPMAGVTNKAFRRLCSEYGG-GLYVTEMVTARALVERKPESMRIIEHDPD 129 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E ++Q+ G D + + ++ D I+LN GCP+ +V GA L L Sbjct: 130 EKIRSIQIYGVDAVNVGKAVRMVVEEDRADHIDLNFGCPAPKVTRRGGGAALPWKTDLFT 189 Query: 122 DCVKAMRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 V+ IP+T+K R GIDD ++ +H R A Sbjct: 190 AIVQTAVKEASRNDIPLTIKMRKGIDDD---HITFLESAKIARDAGVAAIALHGRTA--- 243 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREA 236 D+ + QL+ P + + NG I S E+A ++ DGV++GR Sbjct: 244 -----AQHYSGKADWDSIAQLRELIPDVPILGNGDIFSAEDAVRMVEQTGVDGVVIGRGC 298 Query: 237 YQNPGILAAVDREIFGSSDTDADPV-----AVVRAMYPYIERELSQGTYLGHITRHMLGL 291 P + + GSS+ + + R +E + L I +H+ Sbjct: 299 QGRPWLFGDLQNAFEGSSERIRPTLTEVSDMIYRHAELLVETFGDETRGLREIRKHVAWY 358 Query: 292 FQGIPGARQWRRYLSE 307 F+G P + R +++ Sbjct: 359 FKGYPVGGELRAKMAQ 374 >UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYE4_DESOH Length = 326 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 81/332 (24%), Positives = 133/332 (40%), Gaps = 29/332 (8%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEE 63 V +GR +AP+ TD R + L+Y+EMV++ + + L + EE Sbjct: 6 VFLAGRTILAPLAGITDAPFRRLAKAAGC-ALVYSEMVSSHGLFYQSEKTGAMLRTTPEE 64 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P A+Q+ G PA + + A + +A G I++N GC ++ GA LM + L A+ Sbjct: 65 APFAVQIFGGKPAVMGRAAAMVQASGAHMIDINFGCSVKKILKSGAGAALMKDLPLAAEV 124 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 ++A+RD VSIP+T+K R G + S F + ++ +H R A Sbjct: 125 IQAVRDAVSIPLTIKMRSGWNPDGSDAF---HLAEIAEARGVNAVALHPRTAT------- 174 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPG 241 D+ + LK+ L + NG I E+A+ L D VMVGR A P Sbjct: 175 -QGFGGTADWSLIAALKQR-TGLPVIGNGDIVLPEDARRMLDQTGCDAVMVGRAAIGAPW 232 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYI---ERELSQGTYLGHITRHMLGLFQGIPGA 298 I ++ + G + M YI + + + + +P Sbjct: 233 IFKQINACLAGKPVVEPSLEHRFEVMSEYINAMVAHYGEDLACRVMRSRLGWFTRAMPHG 292 Query: 299 RQWRRYLSENAHKAGADINVLEHALKLVADKR 330 +R + I + L V+D R Sbjct: 293 TLFRESIRR--------IETKDQVLAAVSDYR 316 >UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xenopus RepID=DUS3L_XENLA Length = 640 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 66/296 (22%), Positives = 116/296 (39%), Gaps = 19/296 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE- 61 EK + + + +AP+ + R + L + + EM ++ G+ A + Sbjct: 287 EKKTIDFRNKLYLAPLTTCGNLPFRRICKRLGAD-ITCGEMAMCTNLLQGQPSEWALLKR 345 Query: 62 --EEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +QL G+ P + +CA+L D +++NVGCP D V G LM Sbjct: 346 HHSEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTN 405 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 VK M V+ +P+TVK R G+ Q+ I + G + +H R Sbjct: 406 KFEQIVKGMNSVLDVPLTVKIRTGV--QEKVNIAHKLIPNLRDWG-VSLVTLHGR----- 457 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ-HMDGVMVGREAY 237 +E R ++ + Q + + + NG I S E+A LQ + GVM+ R A Sbjct: 458 ---SREQRYTKLANWEYIDQCAKIASPVPLFGNGDIISYEDANRALQTGVAGVMLARGAL 514 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P + + + + + +++ Y +E S + + ML Sbjct: 515 FKPWLFTEIKEQRHW-DISSTERFDILKDFTNYGLEHWGSDCQGVEKTRKFMLEWL 569 >UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Streptococcus RepID=Q5M689_STRT2 Length = 350 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 123/312 (39%), Gaps = 23/312 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 +V R +APM T+ R + S L+ EM++ +++ L E Sbjct: 37 NVEIPHRTVLAPMAGVTNSAFRTIAKEFSA-GLVVMEMISEKGLLYNNEKTLHMLHIDEN 95 Query: 63 EHPVALQLGGSDPAALAQCAKLAE-ARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 EHP+++QL G D L + A + D +++N+GCP ++V GA + + + Sbjct: 96 EHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLKDPDKIY 155 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 VK + V+ IP+TVK R G D D L + +H R Sbjct: 156 HIVKEVTSVLDIPLTVKMRTGWSDSD----LAVENALAAESAGVSALAMHGRT------- 204 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQN 239 +E D+ + ++ + + NG ++++++AK ++ +D VMVGR A N Sbjct: 205 -REQMYTGHCDHETLARVAKAITKIPFIGNGDVRNVQDAKLMIEELGVDAVMVGRAAMNN 263 Query: 240 PGILAAVDREIFGSSDTDADP----VAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 P I ++ + P + + + + + +G Sbjct: 264 PYIFTQINHFFETGEELPDLPFDKKLDIAEDHLKRLVDLKGEMIAVREFRGLAPHYLRGT 323 Query: 296 PGARQWRRYLSE 307 GA + R +S Sbjct: 324 AGAAKVRGEVSR 335 >UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3 n=6 Tax=Clostridia RepID=Q2RM54_MOOTA Length = 334 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 86/328 (26%), Positives = 142/328 (43%), Gaps = 24/328 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEE 63 V + +APM +TDR R R L YTEM++ +I+ + L E Sbjct: 10 VTLAAPLIMAPMAGYTDRVFRLLAREAGA-ALTYTEMISAQGLIYNNKNTHALLDLKGEP 68 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 PVA+QL G +P +A ++A A G I+LN+GCP+ ++ G+ LM + A Sbjct: 69 GPVAVQLFGREPEIMAAATRIAVAAGAAIIDLNMGCPTPKIVKNGEGSALMRDLPRAAAI 128 Query: 124 VKAM-RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 V AM R +PVTVK R+G D +DS + V R + SG + Sbjct: 129 VAAMVRAAGPVPVTVKMRLGWD-EDSINVVEAARAVVYAGAAAVAIHGRTRSQFYSGRA- 186 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNP 240 D+ ++K + + NG +++ +A L DGVMVGR A NP Sbjct: 187 ---------DWSYFRRVKEAV-DVPVIGNGDVRTARDAVTMLAETGCDGVMVGRGAVGNP 236 Query: 241 GILAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 +L A+ + G + + + + + T + + +H+ F+G+P Sbjct: 237 WLLTAIRAVLEGRPEPPPVDVRTRMTMACRHLKLLVELKGETTAVKEMRKHLACYFRGLP 296 Query: 297 GARQWRRYLSENAHKAGADINVLEHALK 324 GA + R+ ++ A I ++ L+ Sbjct: 297 GAARLRQQINTLTTAAEV-IAAIKAYLR 323 >UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=2 Tax=Eumetazoa RepID=UPI000186DAF4 Length = 557 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 67/306 (21%), Positives = 129/306 (42%), Gaps = 25/306 (8%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAY 59 EK ++W + ++P+ + R + + + +EM +++ G + + Sbjct: 201 EKKKINWKEKLYLSPLTTLGNLPFRRICKEFGAD-ITCSEMAMATSLLQGLKYEWALIKR 259 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E E +QL G++P + +CA+L E D I++N+GCP D V G+ L+ + Sbjct: 260 HESEDLFGIQLCGNNPFVMTKCAQLLEESTNVDYIDINLGCPIDLVYQKGGGSGLLRREK 319 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 ++ +K+M V+S+P+TVKTR G+ + I G + +H R Sbjct: 320 VLESVIKSMSKVMSLPLTVKTRTGVYADKNVA--HRLIPMFVDSG-VSLITVHGR----- 371 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH---MDGVMVGRE 235 +E R D+ + + + + + NG + S E+ L+ + GVMVGR Sbjct: 372 ---SREQRYTRTADWNYINECGKAASPIPVFGNGDVLSFEDYNRALKENNNVSGVMVGRG 428 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRH-----MLG 290 A P I + + + ++ +++ Y T +TR + Sbjct: 429 ALYKPWIFKEIKEQKNW-DISSSERFDIIKKFVNYGLDHWGSDTMGVELTRKFTLEWLSF 487 Query: 291 LFQGIP 296 L++ IP Sbjct: 488 LYRYIP 493 >UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31II6_THICR Length = 320 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 80/325 (24%), Positives = 138/325 (42%), Gaps = 23/325 (7%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE---EEHPVA 67 ++APM TDR R R + +EMV + + E P Sbjct: 10 PTIALAPMAGITDRVYRDICRESGA-SYAVSEMVASKKQLRESAKSSTRHADKTETSPRI 68 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +QL G+ P L A +++G D I+LN+GCP+ +V + G+ LMG + VAD K++ Sbjct: 69 VQLLGTHPEELVDAALWQQSQGADIIDLNMGCPAKKVCDVAAGSALMGQPERVADIFKSL 128 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + + +PVTVK R G D + I ++ + + IH R + ++ Sbjct: 129 TEAIDLPVTVKIRTGTDVDNINAVE---IAKLAQELGLKAITIHGRT--------RADKF 177 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAA 245 +Y + +K+ + + NG I S +EA+ L++ DG+M+GR A P I Sbjct: 178 NGQAEYDTIKAVKQAV-DIPVIANGDICSPKEAQFVLKYTGSDGIMIGRAAQGYPWIFRE 236 Query: 246 VDR-EIFGSSDTDADPVAVVRAMYPYI-ERELSQGTYLGH--ITRHMLGLFQGIPGARQW 301 + G + M + E E+ G +LGH +H+ Q +P + Sbjct: 237 IAHFLKTGDCLPSPSFAEFQQVMTRHFSELEILYGEHLGHKIARKHLGWYSQYLPNGTEL 296 Query: 302 RRYLSENAHKAGADINVLEHALKLV 326 R+ + A +N++ H + Sbjct: 297 RKRFNRL-ENTQAQLNLINHYFDTL 320 >UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococcus RepID=C5WE57_STRDG Length = 354 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 67/321 (20%), Positives = 127/321 (39%), Gaps = 25/321 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 DV R +APM T+ R + L+ EM++ +++ L E Sbjct: 41 DVEIPHRTVLAPMAGVTNSAFRTIAKEFGA-GLVVMEMISEKGLLYNNEKTLHMLHIDEN 99 Query: 63 EHPVALQLGGSDPAALAQCAKLAE-ARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 EHP+++QL G D L + A + D +++N+GCP ++V GA + + + Sbjct: 100 EHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLRDPDKIY 159 Query: 122 DCVKAMRDVVSIPVTVKTRI-GIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 VK + V+ IP+TVK R D + E + +H R Sbjct: 160 HIVKEVTSVLDIPLTVKMRTGWADSSLAVENAL-----AAESAGVSALAMHGRT------ 208 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQ 238 +E D+ + ++ + + NG ++S+++AK ++ +D VM+GR A Sbjct: 209 --REQMYTGTCDHETLARVSKAITKIPFIGNGDVRSVQDAKFMIEEIGVDAVMIGRAAMN 266 Query: 239 NPGILAAVDREIFGSSDTDADPVA-VVRAMYPYIEREL---SQGTYLGHITRHMLGLFQG 294 NP + ++ + P A + +++R + + + +G Sbjct: 267 NPYLFTQINHFFETGQELPDLPFAKKLDIAKDHLKRLINLKGETIAVREFRGLAPHYLRG 326 Query: 295 IPGARQWRRYLSENAHKAGAD 315 GA + R +S A + Sbjct: 327 TAGAAKVRGAVSRAETLAEVE 347 >UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenophonus nasoniae RepID=D2U2K4_9ENTR Length = 458 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 73/326 (22%), Positives = 135/326 (41%), Gaps = 23/326 (7%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEH 64 APM TDR R + + +EM+++ + + +S+E Sbjct: 36 QIKNCLVAAPMAGITDRPFRSLCYSMGA-GMTVSEMLSSNPQVWKTDKSRLRMIHSDELG 94 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 ++Q+ GSDP +A A++ A G I++N+GCP+ +V + G+ L+ +L+ + Sbjct: 95 IRSVQIAGSDPDEMATAARINVANGAQIIDINMGCPAKKVNRKLAGSALLRYPELIEKIL 154 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 A+ + V +PVT+K R G + E C I ++ + + IH R + Sbjct: 155 LAVVNAVDVPVTLKVRTGWSPE---ERNCIKIAQLAERCGIQAVTIHGRT--------RA 203 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGI 242 +Y + K++ + + NG I +A+A L + D +M+GR A P I Sbjct: 204 CLFNGAAEYDSIRAAKQNV-TIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 262 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIEREL----SQGTYLGHITRHMLGLFQGIPGA 298 + + P+A V+ + +EL QG + +H+ + Sbjct: 263 FREIQHYLETGELLPPMPIAEVQCLMQAHVKELHDFYGQGKGIRIARKHVSWYLREHAPD 322 Query: 299 RQWRRYLSENAHKAGADINVLEHALK 324 Q+RR + A + VLE + Sbjct: 323 DQFRRTFNT-IEDASEQLEVLEAYFE 347 >UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax=Bacteria RepID=Q9RDC6_STRCO Length = 406 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 71/329 (21%), Positives = 122/329 (37%), Gaps = 43/329 (13%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLL-SRNTLLYTEMVTTGAIIHGKGDYLA---YSEEEHP 65 + +APM T+ R R L +EM+TT A++ + + E P Sbjct: 24 APPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALVERNEKTMQLIHFDATETP 83 Query: 66 VALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 ++QL G DP + + ++ G D I+LN GCP +V G+ L L+ V Sbjct: 84 RSIQLYGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLRAIV 143 Query: 125 K-AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + A+ +PVT+K R G+DD ++ + +H R Sbjct: 144 REAVTGAGDLPVTMKMRKGLDDDHLTYLD---AGRIAVEEGVTAIALHGRTT-------- 192 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPG 241 D+ + +LK P + + NG I S E+A ++ DGV+VGR P Sbjct: 193 AQHYGGTADWDAIARLKEHVPEIPVLGNGDIWSAEDALRMVRETGCDGVVVGRGCLGRPW 252 Query: 242 ILAAVDREIFGSSDTDADPV--AVVRAMYPY---IERELSQG------------------ 278 + A + G +D+ P V M + + + G Sbjct: 253 LFADLVAAFEGRTDSFVRPTLREVADVMVRHATLLGEWIENGGTARRATVEGGGGRREGE 312 Query: 279 -TYLGHITRHMLGLFQGIPGARQWRRYLS 306 + +H+ +G + R+ L+ Sbjct: 313 ARGVIDFRKHVAWYLKGFAVGSEMRKRLA 341 >UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3 n=24 Tax=Cyanobacteria RepID=Q3AZ67_SYNS9 Length = 356 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 87/326 (26%), Positives = 143/326 (43%), Gaps = 20/326 (6%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAII--HGKGDYLAYSEEEHP 65 R +P+ TD+ R +R SR++LL+TEMV ++ HG G EE P Sbjct: 34 QLHSRVLQSPLAGVTDKIFRGLVRRWSRDSLLFTEMVNATSLELGHGYGKMDDLKAEEGP 93 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +A+QL P A+A A+ AE G I++N+GCP ++ G+ L+ + L ++ Sbjct: 94 IAVQLFDHRPHAMAHAARRAEQAGAFLIDINMGCPVRKIAKKGGGSGLIRDPNLATQILE 153 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+ D VSIPVTVKTR+G S + + G +M +H R +E Sbjct: 154 AVVDAVSIPVTVKTRLGWCGSSSDPIT--WCRQLQNAG-AQMLTLHGRT--------REQ 202 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL 243 ++ + ++K+ + + NG I S +A L+ DGVMVGR +P ++ Sbjct: 203 GFKGQANWNAIAEVKQAL-TIPVIANGDINSPTDALRCLEITGADGVMVGRGTMGSPWLV 261 Query: 244 AAVDREIFGSSDTD-ADPVAVVRAMYPYIERELSQGTYLGHI--TRHMLGLFQGIPGARQ 300 ++ D A + + +S G + +HM G PGA Q Sbjct: 262 GQIEAAFMNRPIPATPDSGARLHLAKEQLHDLVSSRGSHGLLIARKHMSWTCTGFPGAPQ 321 Query: 301 WRRYLSENAHKAGADINVLEHALKLV 326 R L A ++++A+ + Sbjct: 322 LRHSLMR-ATTPDDAYQLIDNAINSL 346 >UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coelomata RepID=DUS3L_HUMAN Length = 650 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 118/296 (39%), Gaps = 19/296 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAY 59 EK + G+ +AP+ + R + + + EM ++ G+ L Sbjct: 297 EKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGAD-VTCGEMAVCTNLLQGQMSEWALLKR 355 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 + E +QL G+ P + +CA+L D +++NVGCP D V G LM + Sbjct: 356 HQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRST 415 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 V+ M V+ +P+TVK R G+ Q+ + + G + +H R Sbjct: 416 KFQQIVRGMNQVLDVPLTVKIRTGV--QERVNLAHRLLPELRDWG-VALVTLHGR----- 467 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA-KAHLQHMDGVMVGREAY 237 +E R D+ + + + + + NG I S E+A +A + G+M+ R A Sbjct: 468 ---SREQRYTKLADWQYIEECVQAASPMPLFGNGDILSFEDANRAMQTGVTGIMIARGAL 524 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P + + + + ++ + ++R Y +E S + R +L Sbjct: 525 LKPWLFTEIKEQRHW-DISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWL 579 >UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDL9_PLALI Length = 385 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 129/325 (39%), Gaps = 20/325 (6%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEEEHP 65 R ++P+ +T+ R + L L T++V ++ G L A + P Sbjct: 46 LPFRTLLSPLAGFTNLPFRRVVHELGGLGLGTTDLVNARGLLAGSEKTLRLIATHPIDRP 105 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 A+Q+ G + + + A+L EARG D I++N+GCP +V GA LM +A + VK Sbjct: 106 FAVQIFGGEASIMRDAAQLLEARGVDSIDINMGCPVLKVVKTGAGASLMCHADAATELVK 165 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+ + V +PVTVK R+G D + + IH R G S N Sbjct: 166 AVVEAVHVPVTVKMRLGWDAS---QLTAPRFAREFEQVGVAAVAIHGRTR-AQGFSGTVN 221 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREAYQNPGIL 243 R + Q+ + + NG I+S+++A A + +GR A NP I Sbjct: 222 R-------DGIRQVVEAVDSIPVIANGDIRSVDDAIAMYDETGCQAISIGRGALANPWIF 274 Query: 244 AAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGAR 299 + A D + ++R + Y++ + + T + + + + Sbjct: 275 RQLTEWETTGDWAPAGSFNDRLLLMRRQFRYLQEWVGEETAVSAFRKMSHWYTKAMRVGP 334 Query: 300 QWRRYLSENAHKAGADINVLEHALK 324 R + + + E AL Sbjct: 335 ALRHAVQSAKTGEEFEQALQEIALA 359 >UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9Q3_9FIRM Length = 329 Score = 259 bits (663), Expect = 9e-68, Method: Composition-based stats. Identities = 68/329 (20%), Positives = 136/329 (41%), Gaps = 29/329 (8%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEEEHP-- 65 + +APM T R F+R + + +EMV+ + + + +E EH Sbjct: 16 NKAILAPMAGVTTLPYRLFMREMGCK-IFISEMVSAKGLYYKSKNTFPLMETNELEHKDS 74 Query: 66 -VALQLGGSDPAALAQCA-KLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 +Q+ GS+P + + + +D I++N+GCP ++ N G+ L+ + Sbjct: 75 VTGIQIFGSEPEIMGEITERYINDTAFDFIDINMGCPMKKIVNNGDGSALLKDLDKANKV 134 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 V+ ++ S PV+VK R+G + E + + I G +M +H R + Sbjct: 135 VREVKSASSKPVSVKVRLGFN-----ENIIEDIIKAIEDGGADMITVHGRT--------R 181 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPG 241 E +DY + + K + + NG + + +AK + + DGVM+GR A +P Sbjct: 182 EQVFTGEVDYDGIKKAKETAS-VPLIANGDLDNYLKAKEKMDYTGADGVMIGRGANYDPF 240 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIEREL---SQGTYLGHITRHMLGLFQGIPGA 298 I + + I G ++ + A + E L + +++ +GI + Sbjct: 241 IFSQFNECISGKKVSEYSLRDKIDAARKHFEIHLKYSKDKKKVIEFRKYLYWYIKGIKNS 300 Query: 299 RQWRRYLS--ENAHKAGADINVLEHALKL 325 + R ++ + N ++ L+L Sbjct: 301 AKIRNSINNVNEIDQVYEIFNRIDDILEL 329 >UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes RepID=Q5FMA1_LACAC Length = 342 Score = 259 bits (662), Expect = 9e-68, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 129/332 (38%), Gaps = 24/332 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY--- 59 + D+ R VAPM ++ R + L+ EM++ II+ L+ Sbjct: 7 KIRDITIPNRVVVAPMAGVSNSAFRVVCKEFGA-GLVVCEMISDHGIIYRNKKTLSMMDV 65 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 EHP+++Q+ G L Q A+ + D I++N+GCP +V G+ + ++ Sbjct: 66 DPREHPMSIQIFGGTEETLLQAAQYIDQNTDADIIDINMGCPVPKVTKTDAGSKWLLDSN 125 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + V A+ V PV+VK RIG D + + +G M +H R Sbjct: 126 KIYQMVHAVVQNVQKPVSVKMRIGWDRKHVFAVENALAAQEAGA---SMIAMHGRT---- 178 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREA 236 ++ D+ ++ + + + NG I + E AK L VMVGR A Sbjct: 179 ----RKQMYQGEADWEVLHDVAQ-VLDVPFVANGDIATPELAKKALDDIGCTAVMVGRAA 233 Query: 237 YQNPGILAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 NP IL + + T + V + + + + + Sbjct: 234 LGNPWILKDMVHYLETGETLPPQTVREKVETAKHQLQGLIEIHGEKRAVPEFRQQAAYYL 293 Query: 293 QGIPGARQWRRYLSENAHKAGADINVLEHALK 324 +GIP + + R ++E + ++L++ + Sbjct: 294 KGIPRSARTRAKINEVWTRQEVY-DLLDNFVD 324 >UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaproteobacteria RepID=Q0BSS6_GRABC Length = 370 Score = 259 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 77/335 (22%), Positives = 139/335 (41%), Gaps = 27/335 (8%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPV 66 V +APM TD R R + ++ +EM+ + A++ L +E P Sbjct: 37 VTIETPVILAPMSGVTDLPFRMLAREMGT-GMVVSEMIASWAMVRENKTTLRMAEPAGPP 95 Query: 67 ------ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRV-QNGMFGACLMGNAQL 119 ALQL G DP A+A+ A++A +G + I++N GCP +V G+ LM + Sbjct: 96 SPGSPNALQLAGCDPEAMAEAARIAIDKGAELIDINFGCPVKKVAVGQSAGSALMRDEVT 155 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 A ++A VS+PVT+K R+G D Q ++ M +H R Sbjct: 156 AAKILEATVKAVSVPVTLKMRMGWDHQSLNAPAL---AKIAEASGIRMITVHGRT----- 207 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA--KAHLQHMDGVMVGREAY 237 ++ D+ V ++K+ L + +NG I+++E+A + DGVMVGR Y Sbjct: 208 ---RQQFYEGKADWAFVARVKQATS-LPVIVNGDIQTVEQAAEARAISGADGVMVGRGCY 263 Query: 238 QNPGILAAVDREIFGSSDTDADPV----AVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 P V + P+ ++ Y + R + +H+ Sbjct: 264 GRPWFPRQVAAYLRDGVHIPEPPLSERKQILLNHYDAMLRCFGTDAGMRLARKHVSWYTT 323 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALKLVAD 328 G+ G+ +R ++ A + + +++ + + Sbjct: 324 GLHGSAAFRATVNRLADPSQV-LALIDTFFDPLIE 357 >UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Chordata RepID=DUS3L_MOUSE Length = 637 Score = 259 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 66/296 (22%), Positives = 118/296 (39%), Gaps = 19/296 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAY 59 EK + SG+ +AP+ + R + + + EM ++ G+ L Sbjct: 284 EKKRLDISGKLYLAPLTTCGNLPFRRICKRFGAD-VTCGEMAVCTNLLQGQMSEWALLKR 342 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +QL G+ P + +CA+L D +++NVGCP D V G LM + Sbjct: 343 HPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSA 402 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 V+ + V+ +P+TVK R G+ Q+ + + G + +H R Sbjct: 403 KFQQIVRGVNGVLDVPLTVKMRTGV--QERVSLAHRLLPELRDWG-VALVTLHGR----- 454 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAK-AHLQHMDGVMVGREAY 237 +E R D+P + Q + + + NG I S E+A A + G+MV R A Sbjct: 455 ---SREQRYTRLADWPYIEQCAKVASPMPLFGNGDILSFEDANCAMQTGVAGIMVARGAL 511 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P + + + + ++ + ++R Y +E S + R +L Sbjct: 512 LKPWLFTEIKEQRHW-DISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWL 566 >UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaerococcus RepID=C7RGQ7_ANAPD Length = 326 Score = 259 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 138/328 (42%), Gaps = 24/328 (7%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVA 67 +APM TD R + +TEMV+ A+ + + + E Sbjct: 8 NEIMLAPMAGITDSAFRQICEENGCDK-TFTEMVSVNALDFNNRATEEIMYTAYSEKNCN 66 Query: 68 LQLGGSDPAALAQCAK--LAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +Q+ G D + + K + ++EI+ N+GCP+ ++ N G+ LM + + V + K Sbjct: 67 IQIFGKDCDIIERVIKDKINPREDFEEISFNMGCPAPKIFNNGQGSALMRDVKKVYEIGK 126 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 +++ V VK R+GIDD DS ++ + + I+H R ++ Sbjct: 127 CLKESTDKIVNVKIRMGIDD-DSVNYI--EVGKALEDSGIDYVILHGRT--------RKQ 175 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGIL 243 + ++ + +LK + + NG + S+++ K L DGVM+ R A NP I Sbjct: 176 QYSGKANWQAIRKLKETLS-IPVIANGDVFSVKDYKDILDETGADGVMIARGAMGNPFIF 234 Query: 244 AAVDREIFGSSDTDA---DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 + I G + D +A ++ Y + + + + +H+ +G+P A Sbjct: 235 RQIKDYIQGKETSPISYEDILATIKRQYELSLKYKKEKLVINQMRKHVGWYIKGLPQAAS 294 Query: 301 WRRYLSENAHKAGADINVLEHALKLVAD 328 +R +++ ++LE K + D Sbjct: 295 YRDRVNKLKTSEEI-FDLLEEYRKFLED 321 >UniRef50_C1E9S0 Predicted protein n=2 Tax=cellular organisms RepID=C1E9S0_9CHLO Length = 499 Score = 259 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 119/271 (43%), Positives = 163/271 (60%), Gaps = 19/271 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPV 66 S R SVAPML+ TD H R RL+SR L+TEMV A++H K + LAY +EEHP+ Sbjct: 30 SHRISVAPMLECTDTHFRRVCRLVSRRAHLWTEMVNQDAVVHSWRSKPEMLAYGDEEHPL 89 Query: 67 ALQLGGSDPAALAQCAKLAE-ARGYDEINLNVGCPSDRVQNG-----MFGACLMGNAQLV 120 +QLGG+ P LA A + + YDEINLN GCPS+RV N FGA LM + V Sbjct: 90 TVQLGGASPERLALAATVCDAEYRYDEINLNCGCPSNRVVNKKDVATCFGAALMRDPTHV 149 Query: 121 ADCVKAMRDVVSIPVTVKTRI--------GIDDQDSYEFLCDFINTVSGKGECEMFIIHA 172 +C++ MR+ V +PVTVK R+ D DSY F+ +F++ V+ + FI+HA Sbjct: 150 GECLRRMREAVDVPVTVKHRLGVRPTEKSPDDSMDSYAFVSEFVDVVNQASGVKHFIVHA 209 Query: 173 RKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGV 230 R A LSGLS NR +PPL + V+ L DFP L ++NGGI+++++A HL+ + GV Sbjct: 210 RAAVLSGLSTTGNRTVPPLRHAEVHALADDFPSLGFTLNGGIETMDQAAEHLESGKLRGV 269 Query: 231 MVGREAYQNPGILAAVDREIFGSSDTDADPV 261 M+GR Y+NP +LA VD +G +A Sbjct: 270 MLGRAVYRNPAVLAEVDARFYGDEPREAFRE 300 >UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinobacteridae RepID=D2RA64_GARVA Length = 384 Score = 259 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 71/329 (21%), Positives = 125/329 (37%), Gaps = 29/329 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEE 62 VH + ++PM T+ R R + L EM+T A++ L ++ Sbjct: 12 KVHIATPVVLSPMAGITNWPFRVICREFGPDGLYVAEMITARALVARNPKALRLCRFAPS 71 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E +LQL G +P+ + Q ++ D ++LN GCP +V G+ L L+ Sbjct: 72 EKVRSLQLYGVNPSIVEQATRIVVDENMADHVDLNFGCPVPKVTRRGGGSALPWKTDLLQ 131 Query: 122 DCVKAMRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + + + V IPVT K R+GID+ ++ + C +HAR Sbjct: 132 EILHRVVSVCEPAGIPVTAKFRVGIDENHETFI---QAGHIAQEEGCAAVTLHARTT--- 185 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREA 236 D+ R+ +L + + NG I E+A A + GV +GR Sbjct: 186 -----AEYYGGHSDWQRIGELVETL-DIPVFGNGDIWGAEDALAMFKETGCAGVAIGRGC 239 Query: 237 YQNPGILAAVDREIFGSSDTDADPV------AVVRAMYPYIE-RELSQGTYLGHITRHML 289 P + A + R SD +P ++R + +E + + + + +H+ Sbjct: 240 QGRPWLFADI-RNACEGSDNRVNPTLAEVGSVILRHLNLLVEFYDGDERMAVHDLRKHIA 298 Query: 290 GLFQGIPGARQWRRYLSENAHKAGADINV 318 +G P R+ E N+ Sbjct: 299 WYLKGFPVGGGTRKAFMECESIEDVQRNL 327 >UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonellaceae RepID=C9KMX2_9FIRM Length = 322 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 129/326 (39%), Gaps = 24/326 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY---SEEEHP 65 + +APM TD R + L + EMV++ I LA +EE P Sbjct: 8 FKTPVFLAPMAGVTDTAYRIIAHDMGCP-LCFAEMVSSQGIHFRNERTLAMLQSEKEERP 66 Query: 66 VALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 +A+Q+ + P A+ A EA G D ++ N+GCP+ ++ G+ LM + + + Sbjct: 67 LAMQIFANTPEMAAEAAAFVEALGTADILDFNMGCPAPKIVKNGEGSALMRDPERAFAIL 126 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 A+R V +PVTVK R G D + + ++ + + +H R +E Sbjct: 127 SAIRKAVKMPVTVKMRKGWD---AASVNVVEMAKLAEEAGVDAIAVHGRT--------RE 175 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAK--AHLQHMDGVMVGREAYQNPGI 242 D+ + ++KR + + NG +++ ++ + DGVM+GR A NP I Sbjct: 176 QFYTGRADWEIIGEVKRAV-KIPVIANGDVRTFDDLDKIRAVTGCDGVMIGRAAQGNPWI 234 Query: 243 LAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 + T + AV+ + + + +H +GI Sbjct: 235 FRQFTHYLETGERLPGPTMKERAAVILRHLDLLLKYKGDYVGPREMRKHATWYTRGIVHG 294 Query: 299 RQWRRYLSENAHKAGADINVLEHALK 324 R ++ + + +LE + Sbjct: 295 AILRDRFNKAVTREDF-VEILEEYFE 319 >UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F181_9PROT Length = 341 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 75/304 (24%), Positives = 134/304 (44%), Gaps = 22/304 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE---EEHP 65 +APM TD R + L+ TEM+ + A+ G+ +E +EHP Sbjct: 16 IDNPLVLAPMAGITDLPFRRICKRFGV-GLMVTEMIASRAVDMGRERTERMAELGDDEHP 74 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 V++Q+ GSDP + + A+ A G D +++N+GCP ++ + G+ ++ + LVA + Sbjct: 75 VSIQIAGSDPEFVTEAARWAVGHGADFVDINMGCPVKKICKQVAGSAMLRDEALVARVLA 134 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+ V +PVT+K R G DDQ I ++ ++ +H R + Sbjct: 135 AVVAAVDVPVTLKIRTGWDDQSKN---VQNIARIAEDSGIQLLTVHGRT--------RAQ 183 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL 243 + + L + + + NG I E A+ ++ + DGVMVGR NP +L Sbjct: 184 MFHGHACWEDIG-LAKAAVSIPVIGNGDIVDAESAREMIRVSNCDGVMVGRAVQGNPWVL 242 Query: 244 AAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGAR 299 V I G T A+ +V ++ T +H++ +G+ G+ Sbjct: 243 GEVHAAIAGLPIPPKPTAAERWLIVDEHMRHLVEHHGIRTASKLARKHVIWYSKGLHGSA 302 Query: 300 QWRR 303 ++R+ Sbjct: 303 EFRQ 306 >UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14 Tax=Bacteroidetes RepID=A5FL15_FLAJ1 Length = 332 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 71/317 (22%), Positives = 129/317 (40%), Gaps = 25/317 (7%) Query: 1 MPEKTDVHWSG-RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDY 56 M + ++ +APM D +D R + + ++Y+E +++ +I Sbjct: 3 MVKIGNIELPEFPLLLAPMEDVSDPPFRRLCKTHGAD-MMYSEFISSEGLIRDAIKSRMK 61 Query: 57 LAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 L + E PV +Q+ G D A+ +K+ D +++N GCP +V GA ++ + Sbjct: 62 LDIFDYERPVGIQIFGGDEEAMEMSSKIVSTVKPDLVDINFGCPVKKVVCRGAGAGVLKD 121 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 L+ KA+ +PVTVKTR+G D+ D + + IHAR Sbjct: 122 VDLMVRLTKAVIKGTDLPVTVKTRLGWDESS---INIDEVAERLQDIGVQALTIHART-- 176 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHL--TMSINGGIKSLEEAKAHLQH--MDGVMV 232 + D+ + ++K + P + + NG I S E+A + +DG+M+ Sbjct: 177 ------RAQMYKGHSDWSHIARVKNN-PRITMPIFGNGDIDSPEKALQYKNEYGIDGIMI 229 Query: 233 GREAYQNPGILAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHM 288 GR A P I + T D V R + + + + RH Sbjct: 230 GRAAIGYPWIFNEIKHYFKTGEHLPAPTVIDRVEAARNHLKWSMEWKGERLGIVEMRRHY 289 Query: 289 LGLFQGIPGARQWRRYL 305 F+GI +++++ L Sbjct: 290 TNYFKGIHSFKEFKQKL 306 >UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W908_9FIRM Length = 321 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 137/331 (41%), Gaps = 31/331 (9%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPV 66 + + +AP+ +D R + +TEMV+ A+ + D L SE E Sbjct: 7 NKQIMLAPLAGVSDVGFRLISERYGADK-TFTEMVSVNALYYDNKKTNDLLFISENEKNC 65 Query: 67 ALQLGGSDPAALAQCAK--LAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 +QL GS P + + K + EI+ N+GCP ++ G+ LM N +LV + Sbjct: 66 NIQLFGSKPEVIEKVIKDKINYIEKSKEISFNMGCPVAKITKNGEGSQLMANPKLVEEIC 125 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 K +R + +K R+GIDD+ I ++ + I+HAR K+ Sbjct: 126 KTLRKSTDKKLNIKFRLGIDDKHINYLD---IGKIAQDTGIDYVILHART--------KD 174 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQNPGI 242 ++ + +LK + + + NG I S+E+ L DGVM+ R A NP + Sbjct: 175 QMYSGNANWDHIRKLKENL-QIPVIANGDIFSVEDFINVIDLTKADGVMLARGAMGNPFL 233 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIEREL---SQGTYLGHITRHMLGLFQGIPGAR 299 + I + P+ ++ + + EL + + + +H+ +G+ + Sbjct: 234 FKEIKDYIKTGKYSKPSPIEIIDQLIDQYKLELKYKEEKLVVTQMRKHLSWYIKGLENSS 293 Query: 300 QWRRYLSENAHKAGADINVLEHALKLVADKR 330 + R +++ + ++ + + + + Sbjct: 294 KIRDLVNK--------LKTIDEVMDELENYK 316 >UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A4W7_NITMS Length = 320 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 73/312 (23%), Positives = 134/312 (42%), Gaps = 25/312 (8%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG----------DY 56 +S R +APM +D R + + L+ TE + +II + ++ Sbjct: 3 PKFSSRAFLAPMAGVSDPALRLQCKKMGA-GLVVTEFTSIHSIIAKEEQLKENMKTIQEF 61 Query: 57 LAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 + +SE+E P+++QL GSD AL + A + E +D I+ N+GCP+ + M G L+ Sbjct: 62 IEFSEQERPISVQLFGSDLYALEKAATIVEPY-FDIIDYNMGCPAPHITQQMAGGALLQE 120 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 L + + + V PVT+K R G+ D+ +FL I ++ +M H R Sbjct: 121 VNLTQQIFETLVNAVKKPVTLKIRSGV--TDASKFLFRDIAEIAEDQGIQMITFHPRTVS 178 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGR 234 D+ + +LK + ++ + NG I + E+AK L D VM+GR Sbjct: 179 --------QGYSGSADWKLIKELK-EISNIPVVGNGDITTPEDAKMMLDETGCDYVMIGR 229 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 A NP + ++ + S + + + + Y+ +I + +G Sbjct: 230 GAMGNPFLFEQINDYLKTGSYKEYSFKDRLDSFFDYLHLTNQYKIKFSNIKSQAMRFTKG 289 Query: 295 IPGARQWRRYLS 306 + G + R ++ Sbjct: 290 LKGGSKLRSKIT 301 >UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostridiales RepID=Q14SX5_RUMFL Length = 332 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 74/329 (22%), Positives = 119/329 (36%), Gaps = 27/329 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEE 62 +V ++APM DR R + + +EMV+ I + + +EE Sbjct: 9 NVTIPRTAALAPMAGVADRAYRLMCKRYGA-AYVVSEMVSAKGICYSDRKTAELCTVTEE 67 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA-QLVA 121 E P+A+QL GS+P +A+ K+ D I++N+GCP +V G+ LM + A Sbjct: 68 ERPMAVQLFGSEPDFMAEAVKIVLDYRPDIIDINMGCPVPKVVGTGAGSALMKDPALAAA 127 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 A++ PVTVK R G S + +H R Sbjct: 128 ITEAAVKAAGDTPVTVKIRSGW---SSDSINAPEMARALEASGTAAIAVHGRT------- 177 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQN 239 ++ D + +K + + NG I E D VM+GR +Y N Sbjct: 178 -RDMFYSGQSDMNVIKAVKEAVS-VPVIGNGDITDAESCAEMYGRTGCDLVMIGRGSYGN 235 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIE-----RELSQGTYLGHITRHMLGLFQG 294 P I + + GS +R M +I E + + +H G Sbjct: 236 PFIFREIAARMEGSEYQPPSLEEKMRVMLEHIRLIAGLSEKCEELAMHEARKHAAWYMNG 295 Query: 295 IPGARQWRRY---LSENAHKAGADINVLE 320 G+ ++R LS A +E Sbjct: 296 YYGSAKFRGRCYQLSSYAEAEALAEEFIE 324 >UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E3_HALNC Length = 333 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 72/294 (24%), Positives = 123/294 (41%), Gaps = 22/294 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG--KGDYLAYSEEE- 63 V ++APM +DR R R L+ TEM++ + K + Sbjct: 20 VIIDPPLALAPMAGVSDRPFRQLCREYGA-GLVVTEMMSAKPELQSSAKSRLRQIDSNDI 78 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P A+QL G+DP LA+ A+ A ++G I+LN+GCP+ +V G+ LM VA Sbjct: 79 EPRAVQLLGNDPFELAEAARFAVSQGAQLIDLNLGCPAKKVCKRAAGSALMAEPDTVARL 138 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 ++A+ V PV++K R G D + I ++ M IH R + Sbjct: 139 LEALVAAVDCPVSLKMRTGPDREWRNAVA---IAKIAENAGISMLSIHGRT--------R 187 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREAYQNPG 241 +R +Y + ++ L + NG I + ++A+ + H G+MVGR A+ P Sbjct: 188 ADRYEGEAEYDTIAEVVAAV-DLPVFANGDITTPQKARQVIAHTGAAGIMVGRGAFGQPW 246 Query: 242 ILAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 I +A+ E+ G + V ++ + I + +H+ Sbjct: 247 IFSALKAELTGQPLPSPPDRAERVVAIKKQFEKIYHHYGDSLGIRIARKHLGWY 300 >UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa RepID=B3RKU4_TRIAD Length = 581 Score = 257 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 68/297 (22%), Positives = 120/297 (40%), Gaps = 20/297 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---Y 59 EK +++S + +AP+ + R + + + +EM ++ G+ A Sbjct: 227 EKKQINFSNKLFLAPLTTVGNLPFRRICKTFGAD-VTCSEMALCTNLLQGQQSEWALVKR 285 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E E LQ+ G+ P LA+ ++ R D ++LN+GCP D V + G+ LMG A Sbjct: 286 HESEDLFGLQVCGAWPDTLARLSEYINDRVNVDFVDLNLGCPIDLVFHQGAGSALMGRAN 345 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + V M ++S+P+TVK R GI + S I + G + +H R Sbjct: 346 KLQQIVTGMSSILSVPLTVKLRTGILAKKSTA--HKLIPQIREWG-ASLVTLHGR----- 397 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREA 236 +E R D+ + + + + NG I S E+ H+ + + GVM+ R A Sbjct: 398 ---SREQRYTKLADWSYINECATAADPMPLIGNGDILSFEDYLEHMNNTNVAGVMIARGA 454 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P + + + + +R Y +E S + R +L Sbjct: 455 LIKPWLFTEIKERRHW-DISANERFEFLRKYVNYGLEHWGSDSLGVEKTRRFLLEWL 510 >UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJ96_SYNFM Length = 352 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 76/302 (25%), Positives = 130/302 (43%), Gaps = 26/302 (8%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVAL----QLG 71 APM TD R + ++ TEMV+ ++ + L ++HPV + Q+ Sbjct: 27 APMAGVTDSAYRALMADFGA-AMVTTEMVSIQGLVRNQRATLDLCRQQHPVGVPLAVQVF 85 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G DPA +A+ A+L E G I++N GCP +V GA L+ + +A V+A++ V Sbjct: 86 GRDPAVMAEAARLVEQGGAALIDINAGCPVRKVVRQGAGAILLKDPDRLAAMVEAVKRAV 145 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 S+PVTVK R+G D ++ + + G + +H R A Sbjct: 146 SVPVTVKIRVGWD--NAANGVAGLARQLVSAG-VDAITVHGRTA--------AQMYSGRA 194 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAVDR- 248 D+ R+ ++K + + NG + S E A+ + DGVM+GR + NP + A + R Sbjct: 195 DWSRIAEVKAAVA-VPVIGNGDVTSPELAERMIHETGCDGVMIGRASLGNPWLFAVISRR 253 Query: 249 ----EIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRY 304 G D + A + GH+ + ++ +G P + R Sbjct: 254 WGRGARQGDCPGWNDFLRTAEAHLESFRTMRPRAD--GHLKKLLIWYSKGCPDSAGLRCR 311 Query: 305 LS 306 ++ Sbjct: 312 IA 313 >UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NSS9_9BIFI Length = 422 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 127/334 (38%), Gaps = 29/334 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEE 62 +VH ++PM T+ R + L EM+T A++ L ++ Sbjct: 50 NVHVGTPVILSPMAGVTNWPFRVLCEQYGPDGLYVAEMITARALVARNPKALRLCRFAPS 109 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E +LQL G +P+ + Q AK+ D ++LN GCP +V G+ L L Sbjct: 110 ERIRSLQLYGVNPSIMEQAAKIVVDEQMADHVDLNFGCPVPKVTRRGGGSALPWKTDLFT 169 Query: 122 DCVKAMRDVVS---IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 D V + V IPVT K R+GID + ++ + C+ +HAR Sbjct: 170 DVVSRVVRVCDAAGIPVTAKIRVGIDHEHE---TFHEAGHIAQEEGCKAVTLHARTT--- 223 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREA 236 D+ R+ +L + + NG I +A A ++ GV +GR Sbjct: 224 -----AEYYGGHSDWSRIGELVEQL-DVPVFGNGDIWGAADALAMVEQTGCAGVAIGRGC 277 Query: 237 YQNPGILAAVDREIFGSSD-TDADPVAVVRAMYPYI-----ERELSQGTYLGHITRHMLG 290 P + A + GS + TD V + + + + + + +H+ Sbjct: 278 QGRPWLFADIKHAFAGSDERTDPTLGQVCQVIMRHATYLTEFYDGDERMAAHDMRKHVAW 337 Query: 291 LFQGIPGARQWRRYLSENAHKAGADINVLEHALK 324 +G P RR A ++ AD+ + L Sbjct: 338 YLKGFPVGGGVRRAFM--ACESLADMQRIVDGLD 369 >UniRef50_B7GAU2 Predicted protein (Fragment) n=2 Tax=Bacillariophyta RepID=B7GAU2_PHATR Length = 330 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 124/331 (37%), Positives = 176/331 (53%), Gaps = 35/331 (10%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG-DYLAYSE--EEHPVALQ 69 S+APM+++TDRH R+ +RL+S TLLYTEMV A+ + + YLA E P LQ Sbjct: 1 LSLAPMMEYTDRHFRHLVRLVSNRTLLYTEMVAANALANERKNRYLAQGRVMPEGPSVLQ 60 Query: 70 LGGSDPAALAQCAKLAEAR------GYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVAD 122 LGGSDP + Q A+ Y INLN GCPS +V G FGA LM QLVA+ Sbjct: 61 LGGSDPEQMFQAAQTVLDMTARGHCDYTAINLNCGCPSPKVAGKGCFGAALMDEPQLVAE 120 Query: 123 CVKAMRDVVS--IPVTVKTRIG--------------IDDQDSYEFLCDFINTVSGKGECE 166 KA+ + +PVTVK RIG ID + Y L FI TV+ G Sbjct: 121 LTKALHEGTEGRLPVTVKCRIGTDSDQAFTRQAYAAIDPEQEYSKLRSFIETVASDGIVT 180 Query: 167 MFIIHARKAWLS-GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL- 224 F +HAR A L SP +NR+IPPL Y V +L +++P T S+NGG++S+ +A+A Sbjct: 181 DFSVHARIAVLQKSFSPSDNRKIPPLKYDIVRRLVQEYPDFTFSLNGGVESISQAQAEFA 240 Query: 225 --QHMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLG 282 + GVM+GR +P A DR ++ + + + +++A + +RE G + Sbjct: 241 TSPGLKGVMIGRSWAADPWSFAMADRLLYKDENAPRNRLEILQAFGRHADREEELGDPV- 299 Query: 283 HITRHMLG----LFQGIPGARQWRRYLSENA 309 I R ++ LF G A+++R L+E A Sbjct: 300 KIRRFIVKAVTPLFTGEINAKRYRIALNEIA 330 >UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia RepID=D0WEP2_9ACTN Length = 318 Score = 256 bits (654), Expect = 9e-67, Method: Composition-based stats. Identities = 83/301 (27%), Positives = 128/301 (42%), Gaps = 27/301 (8%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 74 M D R + L YTEM+++ A+ L +E E VA+QL G + Sbjct: 1 MAGVNDIVFRRLCLEQGCD-LTYTEMISSKALSFANEKTRHLLDLAEGERRVAIQLFGHE 59 Query: 75 PAALAQCAKLAEARGYDE---INLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 P +A+ A E D I++N+GCP+ ++ G+ LM + L A V+ + V Sbjct: 60 PKVMAREAAWVEDELGDALALIDINMGCPAHKIVKKGDGSALMRDQDLAASIVRDVARAV 119 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 S PVTVK R G ++ E DF + G +H R A P Sbjct: 120 SCPVTVKFRRGFGAEE--ETAVDFGLRMEDAG-AAAVTVHGRTA--------AQMYRGPS 168 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAVDRE 249 ++ V ++K + + NG I S A ++ DGVM+ R A NP I A V R Sbjct: 169 EWECVARVKAALS-VPVIGNGDIVSGASAADMVRATGCDGVMIARGAQGNPWIFADVRRV 227 Query: 250 IFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL 305 + G T D V + R + L G + ++ +H++ G+PGA + R L Sbjct: 228 LDGMPPAPDPTRQDRVEMARRHIHLLSSRL--GNTVVYMRKHVMWYLHGVPGASRARAAL 285 Query: 306 S 306 + Sbjct: 286 N 286 >UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ00_9FIRM Length = 336 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 72/323 (22%), Positives = 131/323 (40%), Gaps = 30/323 (9%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEE 62 D+ F +AP+ +TD R L+Y+EMV+ +I+ + + L + Sbjct: 10 DIELPSPFLMAPLAGFTDNAVRTIALEFGA-GLVYSEMVSAKGLIYEQKNTEELLDFRGA 68 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 + +A+Q+ GSDP A+A + E +G +++N+GCP ++ GA LM ++ D Sbjct: 69 DGFIAIQIFGSDPDAVAHGIQCIENKGNAIVDINMGCPMQKIVKSGSGAALMKRPDIIYD 128 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 VK + PVT K RIG D+ + C +H R A Sbjct: 129 MVKDAVKITQKPVTAKIRIGWDNNNINAVDC---AKAIESAGASAVAVHGRTA------- 178 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNP 240 + + ++ + +K+ + + NG IKS +EA + D VM+GR A P Sbjct: 179 -KQKYEGSVNRDVIASVKQSVS-IPVIGNGDIKSAKEALEFMDETGCDMVMIGRGAIGKP 236 Query: 241 GIL-------AAVDREIFGSSDTDADPVA-----VVRAMYPYIERELSQGTYLGHITRHM 288 I + + + T+ +P A ++ + + L + + + Sbjct: 237 WIFKSCNMALSEIRKGKSIDEITEYEPCADEILNTLKKLIDLTVSYKGEKRALLELRKKL 296 Query: 289 LGLFQGIPGARQWRRYLSENAHK 311 + G + +R+ L E K Sbjct: 297 SKYLKNTSGVKDYRKRLYEAGTK 319 >UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC5FF0 Length = 322 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 67/327 (20%), Positives = 142/327 (43%), Gaps = 24/327 (7%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHP-VALQL 70 + +AP+ TD R L + LL+TEMV++ A+ ++ +QL Sbjct: 3 KIFIAPIAGVTDYTYRGILEEF-QPDLLFTEMVSSDALAALNDKTISQILRLRSGNGVQL 61 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G D + AK E G I++N GCP RV + G+ L+ + + + + + +R+ Sbjct: 62 FGKDTEKMIYSAKYIEKLGVKNIDINAGCPMKRVVHSGHGSALLKSPEKIKEILFTLREQ 121 Query: 131 V--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 + S +++K R+G D ++Y I ++ + C +H R + Sbjct: 122 LEESTKLSIKIRVGYDRPENYLQ----IAKIAEEAGCSHITVHGRT--------RAQLYT 169 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAV 246 D+ + ++K + + NG I + E AK ++ +DGVM+ R + NP ++ + Sbjct: 170 GLADWSLIKEIKEHV-TIPVIGNGDIFTAEAAKEKIEDSGVDGVMLARGIFGNPWLIRDI 228 Query: 247 DR-EIFGSSDTDADPVAVVRAMYPYI---ERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 +G T + +I E + Q ++ + +H+ +GIP + +++ Sbjct: 229 REMLQYGEVKTKVSTEDKIDMAIHHILKTEEDNPQREFVFDVRKHICWYLKGIPHSAEYK 288 Query: 303 RYLSENAHKAGADINVLEHALKLVADK 329 ++++ A + +L+ + + + Sbjct: 289 NRINQS-TDYKAVVQLLQELKEKIKGE 314 >UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_DROME Length = 505 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 69/308 (22%), Positives = 120/308 (38%), Gaps = 35/308 (11%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPV 66 S R+ VAPM+D ++ R R L Y+ M + D L E+ P+ Sbjct: 27 SPRYVVAPMVDQSELAWRMLCRRYGAE-LCYSPMYHANLFATDPKYRKDALQTCPEDRPL 85 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q G+D + A LA+ D +++N+GCP + G +G+ L +L+ + V Sbjct: 86 IIQFCGNDAQQILDAALLAQDH-CDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVST 144 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + +++PVT K RI D + + + + C++ +H R G Sbjct: 145 LHAKLAVPVTCKIRIFEDLEKTIRYA-----KMLEAAGCQLLTVHGRTREQKGPL----- 194 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILA 244 ++ + +++ + M NG I +L++ L DGVM NP I Sbjct: 195 -TGVANWNYIKNVRQHI-KIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFK 252 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ---W 301 V ++ + + Y+E I H+ LF I RQ Sbjct: 253 GVSPPVW-------------QMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSEL 299 Query: 302 RRYLSENA 309 R+YL+ Sbjct: 300 RQYLATAN 307 >UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NNQ3_PHYIN Length = 377 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 140/324 (43%), Gaps = 26/324 (8%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPV 66 S + VAPM+D ++ R R L + YT M+ + + + ++ P+ Sbjct: 23 SPKRIVAPMVDQSELAFRMLCRKLGAD-CCYTPMLHSRLFAESAEYREKMFEHHIQDRPL 81 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q G+DP + AK+ E D ++LN+GCP + G +G+ LM + + V VK Sbjct: 82 VVQFCGNDPKTVLAAAKMVEGH-CDAVDLNLGCPQGIARKGHYGSFLMHDKETVKATVKT 140 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + ++IPVTVK R+ DD ++ E F + + G C++ +H R ++ + +E Sbjct: 141 LSAGLNIPVTVKIRVFPDDNETLE----FADMLQEAG-CDLLTVHGRTKEMNKTAVRE-- 193 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILA 244 +++ + ++K + + NGGI++ E+ L+ DGVM +NP + A Sbjct: 194 ----VNWDIIRRIKERL-TIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALFA 248 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLG-LFQGIPGARQWRR 303 + + D + + R + + H+ LFQ + R Sbjct: 249 DTNN----TPGEDTSFLELARQYLECATLYPPASDKI--VRAHLFKILFQDLRVHSDLRD 302 Query: 304 YLSENAHKAGADINVLEHALKLVA 327 L+ + V E A++L Sbjct: 303 ALAAAKSQQEMVEIVDELAVRLKE 326 >UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verrucomicrobia RepID=B1ZWU6_OPITP Length = 370 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 67/323 (20%), Positives = 129/323 (39%), Gaps = 20/323 (6%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEH 64 S ++P+ +T+ R LR L + T++V +++ +A S E+ Sbjct: 7 ELSSNLFLSPLAGYTNLPFRLTLRELGGLGWVTTDLVNARSLLERNPAALKLVASSAEDR 66 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+++QL GS P + A++ E G +++N+GCP +V G+ +M A V Sbjct: 67 PMSIQLFGSVPTEMRDAARICEDLGAQAVDINMGCPVRKVVRVGGGSAMMTELNQTAALV 126 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 + M + V IPVT K R+G DD++ + V +H R + Sbjct: 127 RGMIEAVKIPVTAKMRLGWDDEN---LTAPDLARVLEDAGVAAVFVHGRT--------RA 175 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGI 242 ++ + + + + + NG + + E A+A ++ GV +GR A+ +P I Sbjct: 176 QGFSGTVNLAGIAAVVQAVKRIPVIGNGDVTTPEAARAMIEQTGCAGVSIGRGAFYDPWI 235 Query: 243 LAAVDREIF-GSSDTDADPVAVVRAMYPYIERE---LSQGTYLGHITRHMLGLFQGIPGA 298 + G + VR M + ER + + + A Sbjct: 236 FRRTHHLLTSGELWPEPGFDERVRVMRRHFERYCEFYGEEKGPRLFRKVAPWYAKRFGPA 295 Query: 299 RQWRRYLSENAHKAGADINVLEH 321 + ++R + +A D + E+ Sbjct: 296 KPFKRRIITIDSRADFDAALAEY 318 >UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured marine bacterium 578 RepID=Q6SFW7_9BACT Length = 322 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 73/292 (25%), Positives = 128/292 (43%), Gaps = 22/292 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEHP 65 S + +APM +D+ R R L +EMV + L + E+ P Sbjct: 8 LSSKVLLAPMAGTSDKPFRMICREQGA-ALTTSEMVVMQKHLLNTNKSKHRLDFRSEQSP 66 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +++Q+ GS+ LA+ AK A G D I++N+GCP+ +V N G+ LM N +LV D +K Sbjct: 67 ISIQIAGSESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGSALMKNEKLVEDIIK 126 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+ + V+IPVT+K R G ++++ I ++ +M IH R + Sbjct: 127 AVVNAVNIPVTLKMRTGWNEENKNAPT---IAKIAEDNGIKMLAIHGRT--------RAQ 175 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGIL 243 + +Y V ++K + + NG I S ++AK L + D VM+GR NP ++ Sbjct: 176 KYNGDAEYDTVKKIK-GIVSIPVVANGDITSAQKAKKVLDYTGADAVMLGRATQGNPWLV 234 Query: 244 AAVDREIFGSSDTDAD----PVAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 ++ + A ++++ I +H+ Sbjct: 235 GQINNYLKTGKSPKAPLLDKKISLILRHILQIHDFYGHKMGTQLSRKHIFWY 286 >UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Eukaryota RepID=B5X496_SALSA Length = 654 Score = 254 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 111/296 (37%), Gaps = 19/296 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---Y 59 EK V + + +AP+ + R + + + EM ++ G+ A Sbjct: 301 EKKQVDFKDKLYLAPLTTCGNLPFRRICKRFGAD-ITCGEMAMCTNLLQGQSSEWALLKR 359 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E E +Q+ G P + +CA+L + D +++N GCP D V G LM Sbjct: 360 HESEDLFGVQVEGCFPDTMTRCAELLNNKIDVDFVDINSGCPIDLVYKKGGGCGLMTRTN 419 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 ++ M V+ +P+TVK R G+ Q+ I + G M +H R Sbjct: 420 KFEQIIRGMNSVLDVPLTVKIRTGV--QEKANIAHKLIPEMKKWG-VSMITLHGR----- 471 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ-HMDGVMVGREAY 237 +E R D+ + + + + NG I S +A + + G+M+ R A Sbjct: 472 ---SREQRYTKSADWDYINTCSQLASPIPLFGNGDILSYYDAMKARETDVSGIMLARGAL 528 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P + + + ++ + V+R Y +E S L +L Sbjct: 529 IKPWVFTEIKERRDW-DISSSERLDVLRDFTHYGLEHWGSDTQGLEKTRNFLLEWL 583 >UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Coriobacteriaceae RepID=C8WHM7_EGGLE Length = 330 Score = 254 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 86/325 (26%), Positives = 136/325 (41%), Gaps = 24/325 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPV 66 S R +APM +D R R + L YTEMV+ + + L + E V Sbjct: 10 SRRLLLAPMAGVSDEAFRTLCREQGAD-LTYTEMVSAKGLSYANEKTRHLLRLAPGEDQV 68 Query: 67 ALQLGGSDPAALAQCAKLAEAR---GYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 A+QL G +P +A A E +++N+GCP+ ++ + G+ LM + L A Sbjct: 69 AVQLFGHEPDTMAAQAAWIEREMGQSLAYLDINMGCPARKIVSKGDGSALMKDPALAASI 128 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 V+A+R VS PVTVK R G + D E +F + G C +H R A Sbjct: 129 VRAVRAAVSRPVTVKFRRGWAEGD--ETAPEFARRMEDAGACA-IAVHGRYA-------- 177 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA--HLQHMDGVMVGREAYQNPG 241 E ++ + ++K + + NG ++S +A A D VM+ R A NP Sbjct: 178 EQLYRGRAEWGAIARVKEAVS-VPVVGNGDVRSGADAVAITERTGCDAVMIARAAEGNPW 236 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELS--QGTYLGHITRHMLGLFQGIPGAR 299 + A + G + D V A+ R LS +G + + +H + G+PGA Sbjct: 237 LFAQAKAALAGEPEPDGPTVEERIALARRHARLLSAREGRNIVRMRKHAMWYLAGLPGAA 296 Query: 300 QWRRYLSENAHKAGADINVLEHALK 324 R ++ D V + L Sbjct: 297 AARGRINGCVSVEDFD-EVFDELLA 320 >UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verrucomicrobia RepID=B2ULM0_AKKM8 Length = 334 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 74/333 (22%), Positives = 127/333 (38%), Gaps = 33/333 (9%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE---HPVALQ 69 +APM TD R + L + ++ TE V+ I+ Y++ E P+ +Q Sbjct: 19 LFLAPMAGVTDPIFRTICKELGVDVMV-TEFVSAEGILQAWERNRRYTKIENAHRPIGIQ 77 Query: 70 LGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 L G+D + + A++ D I++N GCP +V G+ L+ + L+A + Sbjct: 78 LFGADGNHMGEAARIILDHEKPDFIDINFGCPVPKVVGKNGGSSLLKDLPLLASVAGGVV 137 Query: 129 DVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 V IPVT K RIG D Q + M IH R + + Sbjct: 138 KAVGERIPVTAKIRIGWDFQS---LCAMDACRLLENEGISMITIHGRT--------RSQQ 186 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILA 244 ++ + + R + + NG I + + ++ GVM+GR A +NP I Sbjct: 187 YSGTANWDIIDECARAMS-VPVIGNGDISTPQAVAYVKENTAVSGVMIGRAAMENPWIFG 245 Query: 245 AVDRE-IFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIPG 297 + G+ DP + + L Y + H+ +L +G PG Sbjct: 246 DAKYYLLHGTMPPARDPQEKAALILRHARMALESRHYGDELHTMRHMRSRILAYTKGFPG 305 Query: 298 ARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 A++ R L + LE L + ++ Sbjct: 306 AKEMRSRLVRVSSMPE-----LEDLLSKLPRQK 333 >UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3 n=4 Tax=Anaeromyxobacter RepID=Q2IG49_ANADE Length = 352 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 131/316 (41%), Gaps = 33/316 (10%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEH 64 + GR+ +AP+ +DR R R + + YTEMV+ ++HG YL +E Sbjct: 7 QFPGRYFLAPLAGVSDRPFRAICRRMGA-SFAYTEMVSAHGLMHGALQTSSYLDREPDED 65 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P A+Q+ S+P LA+ A +A G I++N+ CP +V GA + + + V + V Sbjct: 66 PFAVQIFASEPDVLARGAVVAVQAGAGMIDVNMACPVKKVCGSGAGAAMGRDPRKVEEAV 125 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +A+R V +PVTVK R G D+ E C + + G +H R + Sbjct: 126 RAIRAAVPVPVTVKIRAGWDEG---EVNCVDVARAAEAGGAAAVALHGRT--------RS 174 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGI 242 + V +K+ + + +G + + +A + D V+V R A NP I Sbjct: 175 QLYSGKARWELVRAVKQAVA-IPVLGSGDVWTAGDAVRMREETGCDAVLVARGACGNPWI 233 Query: 243 LAAVDR--------EIFGSSDTDADPVAVVRAMYPYIER-------ELSQGTYLGHITRH 287 + G + + VR + R E S+ + + +H Sbjct: 234 FRELKAIEAGRPPPPPPGRDEWVGTVLEHVRLQVEHRARMAPGEPAEASERHAIRELRKH 293 Query: 288 MLGLFQGIPGARQWRR 303 +L +G G +RR Sbjct: 294 LLWYTRGRRGGVHFRR 309 >UniRef50_C4VAN5 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VAN5_NOSCE Length = 336 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 102/326 (31%), Positives = 175/326 (53%), Gaps = 13/326 (3%) Query: 8 HWSGR-FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL--AYSEEEH 64 ++ + +APMLD T + R F+RL S +T+L+TE++ +IH + L + + Sbjct: 11 NFKTKEICLAPMLDVTTANFRRFVRLTSEHTILFTELIVANTVIHIDKEKLIERLGDIDE 70 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 +Q+GGSD + + + G NLNVGCPS RVQ G FGA LM N +L+++ + Sbjct: 71 RTVVQIGGSDVNEIVNAICVLKDVGCKHFNLNVGCPSTRVQKGCFGAVLMKNKELISEII 130 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 ++ I +++K R G+D+ D+YEF DF++ + + F +HARK WL GLSPK+ Sbjct: 131 NSVYKKCDIVLSLKIRTGVDNYDTYEFFRDFVHFLVKNTPVKKFYVHARKCWLLGLSPKQ 190 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH----MDGVMVGREAYQNP 240 NR IPPL+Y VY++K +FPH+ +NGG+K + + + +DG+M+GREA +N Sbjct: 191 NRNIPPLNYSFVYKIKEEFPHVLFILNGGLKKIADFNKLFCNNNLTLDGIMIGREAIKNI 250 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 + + + + S + + Y+ + I + + G G ++ Sbjct: 251 LVFRSFENYLHES-----SQDTIFSVVKKYLNKFELSKPITFRILNPLQNILHGQKGTKK 305 Query: 301 WRRYLSENAHKAGADI-NVLEHALKL 325 W+ +L+E+ HK + + ++ L Sbjct: 306 WKIFLNESVHKKKLTVSDFIDEIESL 331 >UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI99_KOSOT Length = 314 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 135/334 (40%), Gaps = 30/334 (8%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS 60 MPE +APM +TD R + +++EM++ ++ Sbjct: 1 MPE-------NEVGLAPMAGYTDEAMRAISLEWGAD-FVFSEMLSVEGVLRNDRTTQKII 52 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E P +QL G+D A LA AK + ++N GCP +V GA L+ + + Sbjct: 53 P-ETPCRIQLFGNDIARLAMAAKAVLDK-ATWFDINAGCPVKKVVKRGAGAALLREPEKL 110 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 ++ ++ + +PV+VK R+G D + + + + + ++H R Sbjct: 111 NAMIQTLKGISDLPVSVKIRLGWDKNEVVKIVERLVES-----RPFAIMVHGRTV----- 160 Query: 181 SPKENREIPPLDYPRVYQLKRDFPH--LTMSINGGIKSLEEAKAHLQ--HMDGVMVGREA 236 D+ + ++ + + + +G + S E+ + +DGV+V R A Sbjct: 161 ---VQGYSGVADWESIGKVVKICKPHGIKVYGSGDVFSPEKIVEAFEKYGVDGVLVARGA 217 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELS---QGTYLGHITRHMLGLFQ 293 NP I + S T DP ++ ++++ + + + +H +G + Sbjct: 218 IGNPWIFSQYKELKQKGSYTVPDPHERLKVFAKHLKKLIELKGEERAIIESRKHFVGYCK 277 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALKLVA 327 G+ A + RR + +K + ++++ L + + Sbjct: 278 GLLNATKMRREYMKLKNKTDVENFLMQYGLDIKS 311 >UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F94 Length = 338 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 70/331 (21%), Positives = 129/331 (38%), Gaps = 28/331 (8%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEEEHPVALQ 69 +APM TD R + + TE + + E P Q Sbjct: 14 IFLAPMAGVTDLAYRLLAKECGAD-FTVTEFTAASGLTRKNTNSWLKVETDPREKPFIPQ 72 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD 129 + G D + +A+ + E R D I++N GCP+ +V GA L+ + V V+ + Sbjct: 73 IFGGDISEMAKTVGMLEDRS-DVIDINFGCPAPKVCRNDAGAALLRDPDKVVSMVRRCIE 131 Query: 130 VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 ++P+TVK R+G + + ++ +G +H R R Sbjct: 132 STNVPITVKMRLGTGSGPNTA--LEISKRLADEG-VMRICVHGRT--------LRQRYSG 180 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREAYQNPGILAAVD 247 D+ ++ ++ + + NG + + A+ L+ + G+M+GR A P I + Sbjct: 181 IADWDQIKEISNSV-DIPVIANGDVVDTKSAELCLEATNAGGLMIGRGAIGRPTIFHEIK 239 Query: 248 REIFGSSDT-DADPVAVVRAMYPYIER--ELSQGTY----LGHITRHMLGLFQGIPGARQ 300 + S T RA +R ELSQ Y ++ RH + +G+ GA Sbjct: 240 HGMGWSHKTAPWGKGGPSRARSWCWDRYLELSQEVYGDSGSKNLKRHAISFTKGLEGASA 299 Query: 301 WRRYLS--ENAHKAGADINVLEHALKLVADK 329 R L ++ + G +++ H L+ ++ Sbjct: 300 MRVRLHSIQDKTQLGTEVSNYLHDLEETENQ 330 >UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured SUP05 cluster bacterium RepID=D0U4P6_9GAMM Length = 324 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 124/293 (42%), Gaps = 22/293 (7%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEH 64 + +APM +D+ R R L +EMV + G L +S E Sbjct: 9 QLKSQVFLAPMAGTSDKPFRAICRAQGA-ALTTSEMVVIQKHLLGTNKSKHRLDFSGEPA 67 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+++Q+ GS LA A+ A G D I++N+GCP+ +V N G+ LM + LV + Sbjct: 68 PISIQIAGSQADELAYSAQQALKFGADIIDINMGCPAKKVCNKAAGSALMQDEALVKSIL 127 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 A+ V IPVT+K R G + + I ++ + +M +H R +E Sbjct: 128 NAVVSAVDIPVTLKMRTGWNVSNKNAPT---IAKIAEEAGIQMLSVHGRT--------RE 176 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGI 242 ++ +Y + +K + + NG I S ++A++ LQ+ DGVMVGR NP I Sbjct: 177 DKYTGMAEYDTIKAVKSQV-GIPVIANGDITSAKKAQSVLQYTGADGVMVGRATQGNPWI 235 Query: 243 LAAVDREIFGSSDTDADPVAVVRA----MYPYIERELSQGTYLGHITRHMLGL 291 + +D + P+ V + I + +H+ Sbjct: 236 IHEIDHYLKTGQKATDIPLNVKKQTILDHIKQIHAFYGEKLGTQLSRKHIFWY 288 >UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacterium RepID=B8DSX5_BIFA0 Length = 417 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 74/329 (22%), Positives = 123/329 (37%), Gaps = 29/329 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEE 62 DV + ++PM T+ R + L EMVT A++ L ++ Sbjct: 45 DVMVNTPVMLSPMAGVTNWPFRVLCEEYGPDGLYVAEMVTARALVERNPKALRLCRFAPS 104 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E +LQL G +P+ + Q A+ G D ++LN GCP +V G+ L L Sbjct: 105 ERIRSLQLYGVNPSIMEQAARFLVDNGMMDHLDLNFGCPVPKVTRRGGGSALPWKTDLFT 164 Query: 122 DCVKAMRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + V+ + V +IPVT K R+G+D + ++ + C +HAR Sbjct: 165 EIVQRVVAVCEPANIPVTAKIRVGLDHEHETFLE---AGRIAQEEGCSAVTLHARTT--- 218 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREA 236 D+ R+ +L + + NG I E+A A + GV +GR Sbjct: 219 -----AEYYGGHSDWCRIGELVSTL-DIPVFGNGDIWGAEDAIAMVNETGCAGVAIGRGC 272 Query: 237 YQNPGILAAVDREIFGSSDTDADPV--AVVRAMYPYIE-----RELSQGTYLGHITRHML 289 P + + F SD +P V R + + E + + + + +H+ Sbjct: 273 QGRPWLFGNIGNA-FAGSDVRINPTLGEVGRIIMRHAELLTEFYDGDERMAVHDLRKHVA 331 Query: 290 GLFQGIPGARQWRRYLSENAHKAGADINV 318 +G P RR E V Sbjct: 332 WYLKGFPVGGSTRRAFMECESLKDVREQV 360 >UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CSA9_CRYPV Length = 409 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 72/326 (22%), Positives = 135/326 (41%), Gaps = 21/326 (6%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI--IHG-KGDYLAYSE 61 +V S + +APM+D ++ R + + L Y+ M +G + G + E Sbjct: 13 KNVLKSPKTVLAPMVDGSELAFRLICKKYGCD-LGYSPMYHSGLFSKLQGYRETNFQTCE 71 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E+ P+ +Q G+DP L + +K + + I++N GCP + + G +GA L+ N L+ Sbjct: 72 EDDPMIVQFCGNDPETLVKASKFIDDK-VKGIDINFGCPQNIAKRGNYGAFLLSNPDLME 130 Query: 122 DCVKAMRDV-VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 + + + + PV+ K RI D + + I + G C M +H R G+ Sbjct: 131 RIISTLSESDLKCPVSCKIRIL--DHHDLQPTINLIKRLESAGAC-MIAVHGRTMTSRGV 187 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQ 238 P ++ + LK + NGGI + E+ + L + D VM + Sbjct: 188 L------TGPANWEALKILKSRCS-IPFIANGGISNYEDIQKCLNYTGADAVMSAEGILE 240 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 NP + ++ +A+ Y + + G H+ R +F +PGA Sbjct: 241 NPWLFQGFKTPEAINNKPSQFQIALEYLDYCILYPPPNVGIIRTHLYRIFHTIF-SLPGA 299 Query: 299 RQWRRYLSEN--AHKAGADINVLEHA 322 +R ++ + H+ + LE+ Sbjct: 300 HIFRDEINNSHQVHEFQLFVQNLENF 325 >UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteobacteria RepID=DUSB_PSEPK Length = 337 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 130/307 (42%), Gaps = 22/307 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTG-AIIHGKGDYLAY-SEEE-HP 65 +APM TD+ R + L ++ +EMV++ ++ + + L E + P Sbjct: 11 LRNNLILAPMAGVTDQPFRTLCQRLGA-GMVVSEMVSSDMSLWNSRKSSLRRIHEGDPEP 69 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 ++Q+ G D +A AK G I++N+GCP+ +V N G+ L+ + LV++ + Sbjct: 70 RSVQIAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGSALLRDEALVSEILH 129 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+ V +PVT+K R G D + + ++ + + +H R + + Sbjct: 130 AVVSAVDVPVTLKIRTGWDRANKNGLN---VAKIAEQAGIQALAVHGRT--------RAD 178 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL 243 +Y + +K+ + + NG I S E+A+A L+ +DG+++GR A P I Sbjct: 179 LYTGEAEYDTIGAIKQAVS-IPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRPWIF 237 Query: 244 AAVDREIFGSSDTDADPVAVVR----AMYPYIERELSQGTYLGHITRHMLGLFQGIPGAR 299 ++ + A + V + + +H+ PG + Sbjct: 238 REIEHYLRTGEHLPAPQLDEVERILLEHLAALHAFYGDVMGVRIARKHVGWYLATRPGGK 297 Query: 300 QWRRYLS 306 ++R + Sbjct: 298 EFRARFN 304 >UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium RepID=C6JNK3_FUSVA Length = 320 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 69/326 (21%), Positives = 140/326 (42%), Gaps = 31/326 (9%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA----YSEEEHPVA 67 + AP+ TD R L+ + LL+TEMV+ A+ L E + + Sbjct: 3 KIYTAPIAGVTDYTYRGILKEF-KPDLLFTEMVSINALEVACEKTLKVILRLREGD---S 58 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +QL G D + + AK E+ G I++N GCP ++ N +GA LM +LV + + Sbjct: 59 VQLFGKDIKKMVESAKFVESLGVKHIDINSGCPMKKIVNNGYGAALMEQPELVKAMLSEV 118 Query: 128 RDVVSIP--VTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 R ++ +++K R+G + + I ++ + C+ IH R +E Sbjct: 119 RSALNDKTDLSIKIRVGYKESKNPVE----IAKIAQETGCKHITIHGRT--------REQ 166 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGIL 243 D+ + ++K + + NG I + E+AK + + +DG+M+ R + NP ++ Sbjct: 167 MYTGKADWSIIKEVKESV-DIPVIGNGDIFTAEDAKERVDYSGVDGIMLARGIFGNPWLI 225 Query: 244 AAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGAR 299 + TD + + + E E + ++ + +H+ +GI Sbjct: 226 RDIREYFEYGKILHPVTDIEKIDMAIKHTKRTEVEHPERPFIFELRKHLCWYLKGIRNTA 285 Query: 300 QWRRYLS--ENAHKAGADINVLEHAL 323 + + ++ +N ++ +N ++ L Sbjct: 286 EIKDKINHTDNYNEIVELLNRVKDNL 311 >UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X244_DESRD Length = 328 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 77/321 (23%), Positives = 133/321 (41%), Gaps = 24/321 (7%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEEHPVALQL 70 +AP+ +TD R R + +TEM++ +I+ G D LA + + P+ +QL Sbjct: 20 WLAPLAGFTDLPFRLLCRENGAR-VAHTEMISVKGLIYNSQGTWDLLATAPADTPLVVQL 78 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G+DP AQ + RG+ I+LN GCP +V GA LM + Q + ++ + Sbjct: 79 FGADPDCFAQPVRWLTERGFHWIDLNAGCPVRKVIKTGAGAALMEDPQRLVRIMQTIGRA 138 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 + VK R+ D S + L +T++ + +H R A Sbjct: 139 APVQAGVKLRLPADG--STDGLLRLRDTLA-RAGVSWITLHPRTA--------RQGYGGL 187 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILA---A 245 + + ++ P + + +G + + + A+ + DG+M R A NP I A Sbjct: 188 AQWSALSRMAESSP-VPIVASGDLWNAQAARRCFEQTGVDGIMFARGALHNPRIFKADLA 246 Query: 246 VDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL 305 E +DT A A+VR R + L + + +G PGA+Q R+ + Sbjct: 247 TGAEEDPCTDT-ASIAALVRRHGQLCRRYDPSRSMLLKMRSFIPRYVKGFPGAKQARKGI 305 Query: 306 --SENAHKAGADINVLEHALK 324 ++ + LE AL Sbjct: 306 IACQDWEAFEQYADQLEEALA 326 >UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Alphaproteobacteria RepID=B9JF02_AGRRK Length = 342 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 68/293 (23%), Positives = 114/293 (38%), Gaps = 26/293 (8%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE--H 64 V R +APM TD R L+ TEMV + ++ + A + Sbjct: 23 VPIRNRVILAPMSGVTDLPFRQLALRYGA-GLVVTEMVASRELVQDTAESWARLKSAGLK 81 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P +QL G + +A+ AK+A G D I++N+GCP+ +V G G+ LM + + Sbjct: 82 PHMVQLAGREAYWMAEAAKIAADNGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLI 141 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +A V +PVT+K R+G D+ I + + ++ IH R Sbjct: 142 EATVKAVDVPVTLKMRLGWDENS---INAPHIARRAEEAGIQLVTIHGRTRM-------- 190 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPG- 241 D+ + + RD + + NG + + E+A L+ D VMVGR P Sbjct: 191 QFYEGRADWDAIRAV-RDVISIPLVANGDVDTPEDASEILRRSGADAVMVGRGCQGRPWH 249 Query: 242 --ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 +LA G + + Y + + + H +H+ Sbjct: 250 AGVLAGHREPDRG------EIADIALEHYRMMLDFYGEAVGIRHARKHLGWYL 296 >UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTQ2_9FIRM Length = 310 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 137/323 (42%), Gaps = 24/323 (7%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS---EEEHPVAL 68 +F +APM +TDR R + + TEMV+ A+ L E + Sbjct: 3 KFFMAPMAGYTDRAFRQLIYENGLDH-AVTEMVSARALCFNDRKTLELLKKFPGEKNTGV 61 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ SD ++++ + L + I++N+GCP+ ++ G+ L+ N LV + VK Sbjct: 62 QIFASDVESISKASYLLNDFDFSYIDINMGCPAPKIVKNGCGSALIKNPNLVYELVKGAV 121 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 + +++KTR D+ S + + + +H R +E Sbjct: 122 KNSNKKISIKTRKSFDNTLSLDII-----RAAQDAGAFAVTVHPR--------SREEYYK 168 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILAAV 246 D+ + ++K+ F + + NG I ++E+A ++ +DG+ +GR A +NP I + + Sbjct: 169 NKSDWQYLIKIKK-FLTIPLIGNGDILTVEDALYKIKKYDVDGIAIGRGAIENPLIFSQI 227 Query: 247 DREIFGSSDTDADPVAVVRAMYPYIEREL---SQGTYLGHITRHMLGLFQGIPGARQWRR 303 + + G + + + + ++ E+ Q + ++ + + + +++ R Sbjct: 228 KKALKGEKYEELNFNQRIDILLRHLYLEVNYKGQRQAILNMRKTYAYYLKNLKNSKEIRN 287 Query: 304 YLSENAHKAGADINVLEHALKLV 326 L+ + +LE + + Sbjct: 288 KLNVENDYTNV-VKILEEYREQM 309 >UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJZ7_9BACT Length = 340 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 130/307 (42%), Gaps = 20/307 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 + + AP+ T R LR + L+YTEMV+ + YL+ +E Sbjct: 13 RILNKNKLIAAPLAGVTTPPFRKLLRKYF-DGLIYTEMVSVEGVRRKADRTLSYLSITES 71 Query: 63 EHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 + P+ +QL GS P A + ++ + + +++N+GCP +V G +M + Sbjct: 72 DQPIGVQLFGSKPEAYTEAIEVVQDYIKAEFVDINMGCPVKKVLKSGSGCAMMKDPVNSG 131 Query: 122 DCVKAMRDVV-SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 V A + + +P+TVK R+G D ++ + + ++ + E +H R Sbjct: 132 KIVAAAKKALGDVPLTVKIRLGWDKKN---LNYNEMIKIAYEEGAEAVTVHGRT------ 182 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL-QHMDGVMVGREAYQN 239 K ++Y + K + L + NG + + + L +DGVM+GR + Sbjct: 183 --KTEMFSGVVNYDLIADAKANA-KLPIIGNGDVVDVATYEKMLATGVDGVMIGRGMMKQ 239 Query: 240 PGILAAVDREIFGSSDTDADPV-AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 P + ++ S D + +++ + + + +L + ++++ +G+PGA Sbjct: 240 PWLFESILNGRDPSGYMTYDKLYELIKELVRNEKIYKGEMFFLETVKKYIVWFLKGMPGA 299 Query: 299 RQWRRYL 305 R L Sbjct: 300 AALRNKL 306 >UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteobacteria RepID=DUSB_VIBCH Length = 322 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 77/331 (23%), Positives = 138/331 (41%), Gaps = 23/331 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEE 62 + VAPM TDR R + +EM++ + + + E Sbjct: 5 NYQLKNNLIVAPMAGVTDRPFRELCLRYGA-GMAVSEMMSCNPALWKTAKSQNRMVHEGE 63 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 ++Q+ GSDP +A+ A+ + G I++N+GCP+ +V + G+ L+ ++ D Sbjct: 64 SGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDVIED 123 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 +KA+ + V++PVT+KTR G D + C I ++ + +H R Sbjct: 124 ILKAVVNAVNVPVTLKTRTGWD---TDNKNCLSIAQLAEDCGIQALALHGRT-------- 172 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNP 240 + +Y + +K + + NG I S E+A+ L++ D +M+GR A P Sbjct: 173 RACMYKGEAEYDSIKAVKAAVS-IPVIANGDIDSPEKARYVLEYTGADALMIGRPAQGRP 231 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQ--GTYLG--HITRHMLGLFQGIP 296 I + + + P++ V+ + L Q G YLG +H+ Q Sbjct: 232 WIFQEIQHFLEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVSWYLQEHE 291 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVA 327 A +RR + A ++ LE VA Sbjct: 292 QASAFRRTFN-AIETADQQLDALEGYFDNVA 321 >UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota RepID=B9HRE5_POPTR Length = 362 Score = 247 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 110/296 (37%), Gaps = 21/296 (7%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA--- 58 EK + + G+ +AP+ + R + L + + EM ++ G+ A Sbjct: 6 REKKLIDFRGKLYLAPLTTVGNLPFRRVCKALGAD-VTCGEMAMCTNLLQGQASEWALLR 64 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNA 117 E +Q+ G+ P + + +L + D I++N+GCP D V N G+ L+ Sbjct: 65 RHSSEDLFGVQICGAYPDTVTRTVELIDQECTVDFIDINMGCPIDIVVNKGAGSSLLTKP 124 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 + ++A V P+TVK R G + S D + GK IH R Sbjct: 125 MRMKSIIEATSGTVEKPITVKVRTGYFEGKSR---IDSLIVDIGKWGASAVTIHGR---- 177 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPH-LTMSINGGIKSLEEAKAH---LQHMDGVMVG 233 ++ R D+ +YQ R P L + NG + S + H + M+ Sbjct: 178 ----SRQQRYSKLADWDYIYQCARKAPDSLQVLGNGDVFSFVDWNNHKSDCPELSSCMIA 233 Query: 234 REAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHML 289 R A P I + + + + + +++ T TRH L Sbjct: 234 RGALIKPWIFTEIKEQRHW-DISSGERLNILKDYVRSGLEHWGSDTKGVETTRHFL 288 >UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea RepID=Q12U52_METBU Length = 318 Score = 246 bits (628), Expect = 8e-64, Method: Composition-based stats. Identities = 73/325 (22%), Positives = 136/325 (41%), Gaps = 25/325 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEE 62 V G +AP+ + T+ R + +L +TEM+++ A+++G +E Sbjct: 5 RVDLPGNLLLAPLAEVTNLAFRLMCKKYGA-SLCFTEMISSDAVVYGNASSAMRGITCDE 63 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E P LQL G+ P + + A + E Y D I++N+GCP+ + N G+ L+ + +LV+ Sbjct: 64 ERPFGLQLFGNSPEVITEAALVLEDMFYPDMIDINLGCPAPVITNAGCGSALLESPELVS 123 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 D + + V PVT K R+ +S D + + G C +H R Sbjct: 124 DIFSTLCEGVDTPVTAKIRVL----ESRAATLDMAHRLEDAGVCA-ITVHGRTC------ 172 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQN 239 E D+ +K + + + +NG I+ A+ L++ DG+M+GR A + Sbjct: 173 --EQGYSGTADHSYAKLIKEELS-IPVIVNGDIRDGVSAEKVLEYTGCDGLMIGRAAMGD 229 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHI--TRHMLGLFQGIPG 297 P + + R + R L + HI H+ +G+ G Sbjct: 230 PHVFHRISRYLDDGEVIGCG-CEQKRDDLLEYLDLLEKFDLSSHINLKAHVQWFTRGLKG 288 Query: 298 ARQWRRYLSENAHKAGADINVLEHA 322 +R+ R + A + + +++ Sbjct: 289 SRRMRSDIG-YADSRDSIVEFVKNM 312 >UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A55 Length = 669 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 114/296 (38%), Gaps = 20/296 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---Y 59 EK V+++ + + P+ + R + + + EM ++ G+ A Sbjct: 317 EKKQVNFNDKLYL-PLTTCGNLPFRRVCKRFGAD-ITCGEMAMCTNLLQGQQSEWALLKR 374 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E E +Q+ G P + +CA+L D +++N GCP D V G LM + Sbjct: 375 HESEDVFGVQIEGCFPDTMTRCAELINNNTEVDFVDINSGCPIDLVFKKGGGCGLMTRTR 434 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + VK M V+ +P+TVK R G+ Q+ I + G M +H R Sbjct: 435 KFEEIVKGMNYVLDVPLTVKIRTGV--QEKTNIAHKLIPEMKKWG-VSMITLHGR----- 486 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA-KAHLQHMDGVMVGREAY 237 +E R D+ + + + + NG I S E+A A + G+M+ R A Sbjct: 487 ---SREQRYTKLADWDYISTCSKLASPVPLFGNGDILSYEDAMMAKETGVSGIMIARGAL 543 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P I + E + + + ++R + +E S + ML Sbjct: 544 IKPWIFTEIK-EKRHWDISSGERLDILRDFTNFGLEHWGSDTRGVEKTRSFMLEWL 598 >UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium sp. NGR234 RepID=C3MBL4_RHISN Length = 342 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 67/294 (22%), Positives = 117/294 (39%), Gaps = 19/294 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE-- 63 +V R ++APM TD R + TEMV + ++ + A + Sbjct: 21 NVEIRNRVALAPMSGVTDLPFRMLAWRFGA-GFVVTEMVASRELVGNAAESWARLKNSGI 79 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P +QL G + +A+ AK+ EA G D +++N+GCP+ +V G G+ LM + Sbjct: 80 DPHIVQLAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTGGYSGSALMRDPDHALSL 139 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 ++A V +PVT+K R+G D+ L I + + + IH R Sbjct: 140 IEATVKAVRVPVTLKMRLGWDENSINAPL---IARRAEEAGVQAITIHGRTRM------- 189 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPG 241 D+ + + RD + + NG + ++ +A L+ D VM+GR P Sbjct: 190 -QFYNGNADWDAIRAV-RDVISIPLIANGDVDTIADAMEILRRSGADAVMLGRSCQGRPW 247 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 A+ + T+ A+ Y + L H +H+ + Sbjct: 248 HAGALAGAADEPAATEI--AAIFVEHYAMMLDFYGPEIGLRHARKHVGWYLERF 299 >UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dictyostelium discoideum RepID=DUS3L_DICDI Length = 671 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 61/297 (20%), Positives = 114/297 (38%), Gaps = 21/297 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---Y 59 EK +++ + +AP+ + R + L + + EM T ++ G LA Sbjct: 316 EKKRINFENQLILAPLTTVGNLPFRRICKRLGAD-ITIGEMALTTKLLEGTKSELALLKR 374 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +Q+ GS A +CA+ E D +++N GCP D V N GA LM + Sbjct: 375 HPCEDKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALMERPK 434 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 V ++ + +S P T+K RIG + I ++ G C +H R Sbjct: 435 KVEQLLRGISSSLSCPTTIKIRIG--KSEDAPTAHKLIPSLGEWGACA-VTLHGR----- 486 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREA 236 + R ++ V Q + + + NG I + ++ + +M+ R A Sbjct: 487 ---SRAQRYSRLANWDYVKQCS-EVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGA 542 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P I + E + ++ + +R Y ++ S + + + +L Sbjct: 543 LIKPWIFTEIK-EKREWDISASERLDFIRDFANYGLDHWGSDRIGVDNTRKFLLNWL 598 >UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepID=C0W327_9ACTO Length = 438 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 85/347 (24%), Positives = 130/347 (37%), Gaps = 58/347 (16%) Query: 15 VAPMLDWTDRHCRYFLR-------------------------LLSRNTLLYTEMVTTGAI 49 +APM T+ R R LL+ L TEMVTT A+ Sbjct: 40 LAPMAGVTNASFRRLCREQGESALPAHARPAAAGPLPTDDGGLLAPAGLYVTEMVTTRAL 99 Query: 50 IHGKGDYLA---YSEEEHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQ 105 + LA E ++QL G DP + A++ D I+LN GCP +V Sbjct: 100 VERNDKTLAMVRTDPTERVRSIQLYGVDPVIAGKAARILVEEDLADHIDLNFGCPVPKVT 159 Query: 106 NGMFGACLMGNAQLVADCVKAM-----------RDVVSIPVTVKTRIGIDDQDSYEFLCD 154 GA L L+ ++ + R +PVTVK RIG+D++ +E D Sbjct: 160 RKGGGAALPWKKDLLHAILREVVRGAEEGVRLGRREREVPVTVKMRIGVDEE--HETYLD 217 Query: 155 FINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGI 214 G +H R A D+ + +LK + + NG Sbjct: 218 AARAAQDAG-VAALALHGRTA--------RQHYAGKADWSAIARLKEAC-RIPVLGNGDT 267 Query: 215 KSLEEAKAHLQH--MDGVMVGREAYQNPGILAAVDREIFGSSD-TDADPVAV---VRAMY 268 + A ++ DGV+VGR P + A + + GS + T D AV +RA Sbjct: 268 WTGSHALEMMRQTGCDGVVVGRGCQGRPWLFADIVHALSGSVERTHPDLDAVIATIRAHA 327 Query: 269 PYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGAD 315 + EL + + + +H+ +G P Q R L + + A D Sbjct: 328 RLLAAELGEDRGVRDLRKHIGWYLKGYPVGGQARGDLMKVSSLAELD 374 >UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-binding domain protein n=2 Tax=Brachyspira RepID=C0QXB6_BRAHW Length = 325 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 129/302 (42%), Gaps = 24/302 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI---IHGKGDYLAYSEEE 63 V+ RF +APM +TD R R LL TE+V+ A+ + Y+ + E+E Sbjct: 10 VNIPSRFFLAPMAGYTDYVFRRLSRKFGA-GLLVTELVSAAALARQVKKTYRYMEHKEDE 68 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 +P++LQL G++ + ++ + G+ I++N+GCP+ +V GA L+ + + Sbjct: 69 YPISLQLFGANEDDYKRAIEITDLSGFSFIDINMGCPTKKVVKNNGGAGLLEDTDKMISV 128 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + A++ V +PV+VK R+G+ + E G C +H R A Sbjct: 129 LNAVKSVSPLPVSVKIRLGLKRGEGGEIERALAMK--ENGAC-FLTLHGRYAS------- 178 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTM-SINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNP 240 + D+ + ++K + NG IKS E+A +DG+MVGR A NP Sbjct: 179 -DMYRGTADWEAIAKIKEALGEDYILIGNGDIKSKEDAVKAFDISKVDGIMVGRGAIGNP 237 Query: 241 GILAAV------DREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 I + + E D + +++ + + + + + ++ G Sbjct: 238 WIFTELNTIFEDNDEYNNKIDEKDNLKNIIKEHINGCCELYGEVSGIHFMRKFIMKYLTG 297 Query: 295 IP 296 Sbjct: 298 YR 299 >UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales RepID=B9JW92_AGRVS Length = 332 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 72/291 (24%), Positives = 118/291 (40%), Gaps = 20/291 (6%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH-- 64 V R +APM TD R L+ TEMV + ++ + + + Sbjct: 15 VAIRNRVVLAPMSGVTDLPFRQLAFRHGA-GLVVTEMVASRELVFNAAESWSRLKGAGLT 73 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P +QL G DP +A+ AK+AEA G D I++N+GCP+ +V G G+ LM ++ + Sbjct: 74 PHMVQLAGRDPHWMAEAAKIAEANGADIIDINMGCPAKKVIGGYAGSALMREPEIALAMI 133 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +A VSIPVTVK R+G D D G + +H R Sbjct: 134 EATVKAVSIPVTVKMRLGWDSDSINA--PDLSRRAQDAG-VQAITVHGRTRM-------- 182 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGI 242 D+ + + RD ++ + NG I +L +A+ L+ D +M+GR P Sbjct: 183 QFYEGRADWDAIAAV-RDAIYIPLIANGDIDTLGDAQEILRRSGADAIMLGRACQGRPW- 240 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 + + + A+ A Y + + H +H+ + Sbjct: 241 --HAGVLAGHAPPSAEEIPAIAVAHYRAMLDHYGAHVGVRHARKHVGWYLE 289 >UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria RepID=B6YQB2_AZOPC Length = 340 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 139/335 (41%), Gaps = 36/335 (10%) Query: 10 SGRFS-VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHP 65 S R +APM T+ + R + + ++YTE ++ A+I L EHP Sbjct: 16 SNRLVFLAPMEGVTNVYFRSLCKSFGAD-MVYTEFISADALIRHVDKIQGKLKIINSEHP 74 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +A+Q+ G D + + A++ E D ++LN GCP ++ GA ++ + + + + Sbjct: 75 IAVQIYGQDKDTMVEAARICEEMQPDFLDLNFGCPVKKIVRRNAGAGMLRVPKKMIEITQ 134 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 + V+IP+TVKTR+G D+ + + D + G + IH R Sbjct: 135 QVVHSVNIPITVKTRLGWDENS--KIIVDLAERLQDTG-IALLTIHGRTGS--------Q 183 Query: 186 REIPPLDYPRVYQLKRDFP-HLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGI 242 D+ + +K + ++ + NG I S ++ + +D VM+GR + P I Sbjct: 184 MYSGKADWNLIGAVKNNPRMYIPICGNGDIVSPQQCEQAFNRYGVDAVMIGRASIGAPWI 243 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIER-------ELSQGTYLGHITRHMLG--LFQ 293 V + D P +++ +L + + + RH++ LF+ Sbjct: 244 FQEVKYYL---KYNDLAPKKSFEYYLSVLKQQILQSVSQLGERQGILNSRRHIVASPLFK 300 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALKLVAD 328 + + L++ A ++ L + +++ Sbjct: 301 KMSNFK-----LTKIAMLQAITVSSLFEIMDNISN 330 >UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54XQ6_DICDI Length = 435 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 58/294 (19%), Positives = 113/294 (38%), Gaps = 32/294 (10%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSE 61 +V S + +VAPM+D T R R + ++YT M + + DY + Sbjct: 46 RNVLKSPKKTVAPMVDHTFLAFRMLCRKYGAD-MVYTPMFHSKNFATCKTYRRDYWSTCP 104 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E+ P+ +Q G++P + + AK E D I+LN+GCP + G +G+ L+ ++ Sbjct: 105 EDRPLVVQFCGNEPEWVVKAAKYIEDH-CDAIDLNLGCPQQIARRGNYGSFLLDKPHIIL 163 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 V+ + + +P+ K R+ + D+ + C++ IH R G Sbjct: 164 PIVQELHKHIKVPIFCKIRLLPNLDDTIKLALQLQEA-----GCQLLTIHGRTKEQKG-- 216 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQN 239 ++ + ++ + + NG + E+ L+ DGVM N Sbjct: 217 ----HNSGIANWKAIRTIREQLS-IPVIANGSVVQYEDIDRCLEETGADGVMSAEGILAN 271 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 P + + V + + YI+ T + H+ + + Sbjct: 272 PSFFSGLK-------------VPIYQVAREYIDFTEIYKTSIHVTRSHIFKMLK 312 >UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine synthase n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792282 Length = 578 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 124/292 (42%), Gaps = 20/292 (6%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSE 61 ++W + +AP+ + R + + + +EMV + +++ G A E Sbjct: 225 KKINWKNKLYLAPLTTVGNLPFRRICKEFGAD-ITCSEMVLSSSLLQGHNQEWALTKRHE 283 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E +Q+ G++P LA+ A++ + D ++LN+GCP D++ G+ L+ ++ + Sbjct: 284 TEDIFGIQVCGNNPYMLAKSAQVLQENVDMDFLDLNLGCPLDQIYKQGAGSGLLLRSKKL 343 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 C+K+MR V+ +P+TVKTR G++ + D I G + +H R Sbjct: 344 EVCLKSMRTVLDVPLTVKTRSGVNKDQNVA--HDLIPMFKDSG-VSLITVHGR------- 393 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA---KAHLQHMDGVMVGREAY 237 ++ R D+ V + + + + +G I S E+ K + G M+GR A Sbjct: 394 -SRDQRYTKMADWNYVNECAKLASPVQVFSSGDIMSYEDYVDSKLQFPDITGAMIGRGAL 452 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHML 289 P I + E + + + +++ Y T TR L Sbjct: 453 IKPWIFKELK-ENCHWDISSNERLEILKKYVKYGLEHWGSDTRGVETTRKFL 503 >UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae RepID=B9NQS6_9RHOB Length = 364 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 75/294 (25%), Positives = 122/294 (41%), Gaps = 22/294 (7%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE---EEH 64 H + +APM TDR R + ++ +EMV + ++ K +E + Sbjct: 46 HLTPPVLLAPMAGITDRPFRDLVMRFGA-GMVVSEMVASQEMVQAKPGVRERAELSADVE 104 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 A+QL G + +A+ A+ RG I++N+GCP+ +V NG G+ L+ + Sbjct: 105 NTAVQLAGREAHWMAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDHALTLI 164 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +A+ V IPVT+KTR+G D DS D G +M IH R + Sbjct: 165 EAVVAAVDIPVTLKTRLGWD--DSLLNAPDVARRAQDAG-IQMVTIHGRT--------RC 213 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGI 242 D+ + +K + + NG I A+ L DGVMVGR A P + Sbjct: 214 QFYKGRADWQAIGAVKEAVS-VPVIANGDITGPGAARTALDQSGADGVMVGRGAQGRPWL 272 Query: 243 LAAVDREIFGSSDTDADP----VAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 LA + +++G + D + +VR Y + L +H+ Sbjct: 273 LAQICHDLYGIAPPDIPTGSALIDMVRGHYQAMLAFYGTDLGLRVARKHLGWYM 326 >UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZV7_UNCTG Length = 320 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 133/324 (41%), Gaps = 22/324 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 ++ + +APM TD R + L+YT M++ A++ L +E+ Sbjct: 8 NIEFDNNIILAPMAGITDLPLRRLAKS-GGAGLVYTGMLSARALVRSDEKTEKLLKTTED 66 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 E PVA Q+ GS +A+ AK+ G D I++N+GCP +V GA L+ + +LV++ Sbjct: 67 ERPVAAQIFGSAAHIMAEAAKIVRNSGADIIDVNLGCPVKKVAKAGAGAKLLADEKLVSE 126 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 ++++ V +PVTVK R G+ + I V+ +M +HAR A G S Sbjct: 127 ILESVVKSVDVPVTVKIRTGLLPE---HNAATEIIKVAYNCGIKMVAVHARPA-SQGHSG 182 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNP 240 P L +++ + + NGG+ + A L + G+M+GR A N Sbjct: 183 -----FPDL---KLFAASCAGAKIPVIANGGVVDEKTAADFLRVPNCAGIMIGRGALGNY 234 Query: 241 GILAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 I ++ + V ++ Y + + + + +P Sbjct: 235 SIFKRLEAFFSSGKKLPLPSKTEKVEWLKKHVQYSVEYYGEKKGFVVMKKVFHYYVKDLP 294 Query: 297 GARQWRRYLSENAHKAGADINVLE 320 A + R ++ +++ Sbjct: 295 NAAKIRDIFNKKIVTLSDFNELIK 318 >UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4EC62_9ACTN Length = 347 Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 117/325 (36%), Gaps = 30/325 (9%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY---SEEEHPVALQ 69 F +APM TD R R N L Y+EMV+ + + ++EE + +Q Sbjct: 19 FLMAPMAGVTDPAYRIMCRRRGAN-LAYSEMVSVAGLAYASNKTWRLVLPADEEQQICVQ 77 Query: 70 LGGSDPAALAQCAKLAEARGYD---EINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 L GS P A E R D I++N+ CP+ +V G+ LM L V+A Sbjct: 78 LFGSKPEQFASAVAAVEERVGDRLSLIDINMACPARKVVTKGEGSALMRTPDLAEKIVEA 137 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 +PVTVK R G +D + +H R A Sbjct: 138 AVGAAHVPVTVKIRKGFYAEDRNAAT---FAQMLEGAGAAAVAVHGRCAT--------QL 186 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILA 244 D+ V ++ D + + +G + S E+A HLQ V + R Y NP + Sbjct: 187 YTGQADWSVVDEVA-DAVEIPVIGSGDVFSAEDAAEHLQGSGASAVFIARGIYGNPWVFG 245 Query: 245 AVDR-EIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 + G+ V + A+ ++ + + +G+P A WR Sbjct: 246 DARALALDGTPVPSRSSVERLEALREHLTLTHELLPLMSRARTYASWYLKGMPHAAAWRA 305 Query: 304 YLSENAHKAGADINVLEHALKLVAD 328 + + E + LV D Sbjct: 306 QVVRCS--------TYEEFMALVDD 322 >UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteriaceae RepID=D1AWB1_STRM9 Length = 305 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 66/317 (20%), Positives = 139/317 (43%), Gaps = 26/317 (8%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHPVALQL 70 + APM TD R + + +TEMV+ +++ + L E +Q+ Sbjct: 4 KIYTAPMAGVTDYTFRKIIEDF-KPDFTFTEMVSVDKLLYKEVPKILKLRENN---IVQI 59 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G D + + AK E+ G EINLN GCP ++ N G+ L+ + + + + + A+R+V Sbjct: 60 FGKDIYLMQKAAKYIESMGVKEINLNCGCPMKKIVNSGHGSALIKDPRKIEEILTALREV 119 Query: 131 VS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 + +++K R+G D ++Y + + C IIH R +E + Sbjct: 120 LDPKTALSLKIRVGYDKPENYLEIAKIAEKLK----CSNIIIHGRT--------REQKYS 167 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAV 246 D+ + ++K D ++ + NG I + A ++ DG+M+ R NP +++ + Sbjct: 168 GEADWKYIKEVK-DNVNIKVIGNGDIFDAKNAIEKIRETNVDGIMLARGILGNPWLISQI 226 Query: 247 DREI-FGSSDTDADPVAVVRAMYPYIERE--LSQGTYLGHITRHMLGLFQGIPGARQWRR 303 FG T + + +++ ++ + I ++++ + I G + + Sbjct: 227 KELFEFGEIKTIVRDIDRINMAIRHVKEYAIDNENVFFPDIRKYIIWYIENIKGIDETKN 286 Query: 304 YLSENAHKAGADINVLE 320 ++++ + I +LE Sbjct: 287 LINQSF-EYDEIIELLE 302 >UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX2_9PROT Length = 311 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 129/325 (39%), Gaps = 28/325 (8%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEEE 63 + F +AP+ +TD R ++ + + ++EM+ AI + S +E Sbjct: 7 LKSKPLFFLAPLAGYTDLPFRSVVKEFGCD-MTFSEMINANAIAFNNEKTKKMMQKSSKE 65 Query: 64 HPVALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGN--AQLV 120 P +Q+ ++ + ++ D I++N+GCP ++ + +G L+ + + + Sbjct: 66 TPYFIQIAANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLKDENKEKL 125 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 + V A+ V+ K R+G ++ D + G + +H R Sbjct: 126 KEIVSAIIKTSKKIVSAKMRLGYNE----VVAVDRAKMLEDLG-IKFLTVHGRTV----- 175 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQ 238 + +Y + ++ ++ ++ + NG I ++AK L++ +GV +GR Sbjct: 176 ---KQMYKGNANYKEIKKVVKEV-NIPVIANGDITDYKKAKEVLEYTEANGVAIGRGVIG 231 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 P I + ++ G ++ IE G L +H+ +GI A Sbjct: 232 KPWIFLEMKQQ--GEITPYQKKEVILTHFKAMIEWYGDYGVIL--FRKHLHQYSKGIKNA 287 Query: 299 RQWRRYLSENAHKAGADINVLEHAL 323 ++R ++ + IN++E Sbjct: 288 SEFRSKIN-STENKDEVINLIEEYF 311 >UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylobacter RepID=A7H1K2_CAMJD Length = 308 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 65/327 (19%), Positives = 133/327 (40%), Gaps = 39/327 (11%) Query: 7 VHWSGR-FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 + +S + +APM ++D R ++ + + +EM+++ A+++ L +E Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGAD-ITISEMISSNALVYESSKTLHMLERAEL 60 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E+P +Q+ G D L + ++ + D I+ N GCP ++V G+ L+ N +L Sbjct: 61 ENPYIVQIAGGDKEVLKKAVQMLNKMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELFK 120 Query: 122 DCVKAMRDVVSIPVT-VKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 + V +++ +T VK R+G + E + + + + +H R Sbjct: 121 NLVGVIKENNKKSLTSVKFRLGFN-----EKYPEKMAKICESLGVDFVSVHGRT------ 169 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQ 238 ++ DY + K + + NG I + + AK + DG+M+GR + Sbjct: 170 --RKQLYSGKADYESIASAKASV-KIPVIANGDI-NAQNAKEVYKITKCDGLMIGRASVG 225 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 NP I + S D ++ I+ QG + +H+ +G A Sbjct: 226 NPWIFYEIKSGK--SVDEKLKKEIILTHFDEMIKHYKDQGVSI--FRKHLHEYSKGHKDA 281 Query: 299 RQWRRYLSENAHKAGADINVLEHALKL 325 +R +N +++A K+ Sbjct: 282 SAFR-----------DGVNRIDNAEKM 297 >UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriaceae RepID=A5EVV4_DICNV Length = 318 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 77/322 (23%), Positives = 136/322 (42%), Gaps = 26/322 (8%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYT--EMVTTGAIIHGKGDY---LAYSEEEH 64 +APM +D R + + YT EMV + L + ++ Sbjct: 11 KPVVLLAPMAGISDLPYRSLCQRFGSH---YTIAEMVDARPQFLAMPESQLRLQFDDDAR 67 Query: 65 -PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P +QL G DP +A+ A++ +A G D I++N+GCP+ +V G+ L+ + V Sbjct: 68 FPKIVQLVGGDPYLMAETAQVMQALGCDVIDINMGCPAKKVGKQNAGSALLSDLPQVEKI 127 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + + VVSIPVT+KTR+G ++Q + + ++ +H R + Sbjct: 128 LAQVTRVVSIPVTLKTRLGFNEQT---MTIETVAKIAENTGVAALTVHGRT--------R 176 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPG 241 R Y + ++K L + +NG I + +A+ +Q DGVM+GR A NP Sbjct: 177 AQRFNGTAHYDEIGRVKAQTS-LPIIVNGDITTTAQAQDLIQQFGFDGVMIGRAACGNPW 235 Query: 242 ILAAVD-REIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 +LA + + AV+ + +L Q L +H+ +P Sbjct: 236 LLAHMRCALDCDFALPAISRRAVISEHISAL-HQLYQRQGLLIARKHLHWYLAPMPRYDF 294 Query: 301 WRRYLSENAHKAGADINVLEHA 322 WR+ ++ A A + ++ A Sbjct: 295 WRQEINT-ATDLAAQLAIVAQA 315 >UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RTR9_RHORT Length = 362 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 74/305 (24%), Positives = 121/305 (39%), Gaps = 27/305 (8%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-------YLAYSEEE 63 +APM TD R L +TEMV + ++ + A + Sbjct: 12 PLIMLAPMAGVTDSPFRRLAHDYGCP-LSWTEMVASRELLRERARGVDPRLGGGAEAGRA 70 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P A+QL G DP +A+ A+ E G + I++N+GCP +V G+ G+ LM + L A Sbjct: 71 GPFAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALMRDLPLAARI 130 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 ++A+ V++PV++K R+G DD ++ +H R + Sbjct: 131 LEAVVGAVTLPVSLKMRLGWDDASRNAVEL---ARLAESAGISRLTVHGRT--------R 179 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPG 241 D+P + +KR L + NG + +L EA+ L DGVM+GR A P Sbjct: 180 AQMYDGRADWPAIGLVKRAVS-LPVIANGDVTNLSEAREILAVTGADGVMIGRAALGAPW 238 Query: 242 I-----LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 + A A+ AV+ A + L +HM + +P Sbjct: 239 LPGAIARAIAAGTRETPPPALAERAAVMAAHLEGLLACHGLERGLKTSRKHMGWYARTMP 298 Query: 297 GARQW 301 + Sbjct: 299 QGADF 303 >UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GW95_SORC5 Length = 328 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 84/314 (26%), Positives = 138/314 (43%), Gaps = 22/314 (7%) Query: 2 PEKTDVHWSGR-FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYL 57 PE ++ R +APM D TD R R L L TE V ++ G L Sbjct: 5 PESFRRLFARRPVVLAPMEDVTDAVFRRIGRELGAE-LCVTEFVNVEGLLRGCKTARRKL 63 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 A ++ + P A+Q+ G++P LA+ A++AE G +++N GC ++ GA + + Sbjct: 64 ALADGDQPTAIQIYGANPERLAEAARVAEEAGPAFLDINCGCWVPKIAGRGAGAGWLRDP 123 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 + + + + V++PVTVKTRIG +S+ + D + G IH R A + Sbjct: 124 EAMVAMARLVTRSVALPVTVKTRIGW-GPESHMPIVDLARRLEDAG-VAALTIHCRTAQM 181 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGRE 235 D+ + R+ + + +NG IK+ ++A L+ GVMVGR Sbjct: 182 G--------HSGAADWGWAAR-AREVVSIPVVVNGDIKTADDAARALRETGCAGVMVGRA 232 Query: 236 AYQNPGILAA----VDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 A +P I +D + T + +A+ RA + + RH+ G Sbjct: 233 AIDHPWIFREARALLDDGVHLPPPTAEERLALCRAHLIANTEARGEPHGVRVTRRHLTGY 292 Query: 292 FQGIPGARQWRRYL 305 +G+PGA RR L Sbjct: 293 LRGLPGASALRREL 306 >UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia profundicola AmH RepID=B9L781_NAUPA Length = 313 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 63/324 (19%), Positives = 125/324 (38%), Gaps = 28/324 (8%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPV 66 S F +AP+ +TD R ++ + + ++EM AI + + S E+P Sbjct: 10 SPYFFLAPLAGYTDLPFRSVVKKFGCD-MTFSEMTNVNAIAYQNEKTQKMMEKSPLENPY 68 Query: 67 ALQLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGN--AQLVADC 123 +Q+ ++ + ++ + D I++N+GCP ++ + FG L+ + + + Sbjct: 69 FVQIAANNVENAVKAVEIINELNWIDGIDINLGCPVNKARRSGFGGVLLKDENRDFLKEV 128 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 V + PV+ K RIG D + + + IH R Sbjct: 129 VGTIVKTSKKPVSAKMRIGFDKS-----VVEDRAKLLEDLGIVFLTIHGRTV-------- 175 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPG 241 + DY + + + + NG I E+AK L++ GV +GR A P Sbjct: 176 KQMYKGEADYDEIKKGVNAV-KIPVIANGDITDYEKAKYVLEYTGASGVSIGRGAVGKPW 234 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 I + ++ G+ ++ ++ + G L +H +GIP A ++ Sbjct: 235 IFLEMKQQ--GNITSEQKKEVILEHFNQMVYWYGEYGVIL--FRKHAHAYSKGIPKASEF 290 Query: 302 RRYLSENAHKAGADINVLEHALKL 325 R ++E A ++E + Sbjct: 291 RSKMNEVKDPEVAR-KLIEEYFNV 313 >UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKT6_9GAMM Length = 330 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 67/292 (22%), Positives = 124/292 (42%), Gaps = 22/292 (7%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEHPVA 67 +APM +DR R R L + +EMVT+ + G L + +E P Sbjct: 11 PPVFLAPMAGVSDRPLRLIARRLGASA-AVSEMVTSDTRLWGSDKSRHRLDHRQEPRPRI 69 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +QL G++P LA+ A+ RG D I+LN+GCP+ +V + G+ L+G + V + + A+ Sbjct: 70 VQLLGNEPEPLAEAARENVRRGADVIDLNLGCPAKKVCSKAAGSALLGEPERVRELLTAL 129 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + V +PVT+K R+G+D + I ++ M +H R + + Sbjct: 130 VESVEVPVTLKMRLGLDRERVNAET---IAGIAQDCGIAMLTVHGRT--------RADAY 178 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAA 245 DY + ++ R + + NG + + A+ L G+M+GR A P + Sbjct: 179 RGTADYEAIARVVRAVS-IPVLANGDVVDIGSARRALAISGATGLMIGRGAQGRPWLPGQ 237 Query: 246 VDREIFGSSDTDAD----PVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 + + G +A++ + + + + +H+ Q Sbjct: 238 IRASLAGEPVPADPAWDARLALIEEHLRALHAQYGEMQGVRIARKHLGWYLQ 289 >UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZR9_9PLAN Length = 355 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 62/301 (20%), Positives = 111/301 (36%), Gaps = 23/301 (7%) Query: 3 EKTDVHWSGR-----FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-- 55 E ++ GR + +AP+ +T R +R L L T++V ++ G Sbjct: 10 ETKEIQIGGRVLASRYFLAPLAGYTQHAFRVAIRELGGVGLCTTDLVLASHLLSGSRKSK 69 Query: 56 -YLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLM 114 L S + P+ +Q+ G A L A+ E GY ++LN+GCP ++ GA +M Sbjct: 70 ALLTTSPADRPLTIQIFGGITAELVAAARWLEQHGYAAVDLNMGCPMAKINGNGGGARIM 129 Query: 115 GNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK 174 V + D VSIPVTVK R+G D + + +H R Sbjct: 130 CAPDAACQLVAEVVDAVSIPVTVKMRLGWDRDS---ITAPLLAREFEQAGVAAITVHGRT 186 Query: 175 AWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMV 232 + +D + Q + + NG + ++E+A + + V + Sbjct: 187 --------RNQGFGGTVDLQGIRQTVEAVQQIPVIGNGDVCTVEDAFRMREQTGCEAVSI 238 Query: 233 GREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGT--YLGHITRHMLG 290 GR A +P I + + + T+ ++ + + Q I + Sbjct: 239 GRGAMLDPWIFRKISQAVRDEPVTEPTRDEQIQFLERHFSLMFEQHELYGCRLIRKFAAW 298 Query: 291 L 291 Sbjct: 299 Y 299 >UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256J2_CHLFF Length = 339 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 78/336 (23%), Positives = 127/336 (37%), Gaps = 24/336 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEE 62 ++ AP+ ++D R L L++ EMV + + L YSE Sbjct: 9 NILLKSPIVYAPLAGFSDYPYRRMSSLYGLPALMFCEMVKIEGLHYSPSRTLKLLEYSES 68 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 P+ QL GS P + AK+ E G+D I+LN GCP+DR+ G+ L+ +L+ Sbjct: 69 MRPIGGQLCGSKPEMAGEAAKVLEGLGFDLIDLNCGCPTDRITKDGSGSGLLKTPELIGK 128 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQD-SYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 ++ + VSIPVTVK R G D + + E I +H R Sbjct: 129 VLEKIIGSVSIPVTVKIRSGWDGNNINVEETVRIIKEA----GASAVFVHGRT------- 177 Query: 182 PKENREIPPLDYPRVYQLKRDF-PHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQ 238 + + P + + + K + NG + S E AK L DGV+V R Sbjct: 178 -RAQGYVGPSNLEYIARAKAAAGKDFPVFGNGDVFSPEAAKLMLDSTGCDGVLVARGTMG 236 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYI----ERELSQGTYLGHITRHMLGLFQG 294 P I ++ + + +A ++ E S+ +L + Sbjct: 237 APWIARQIEDYLTTGTYQKMPFSTRKQAFLQHLHWVEEYYQSEAKFLCETRKLCGHYLIS 296 Query: 295 IPGARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 R R LS+ A A ++E + + R Sbjct: 297 AAKVRFLRSALSK-ATSVQAVYQLIEAYEESDDEPR 331 >UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=Alphaproteobacteria RepID=DUS_RHILP Length = 317 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 114/296 (38%), Gaps = 20/296 (6%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE--H 64 + R +APM TD R L+ TEMV + +++ + + + Sbjct: 1 MSVRNRVVLAPMSGVTDMPFRELAWRFGA-GLVVTEMVASRELVNDTAESWSRLKAAGFR 59 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P +QL G + +A+ AK+A G D I++N+GCP+ +V G G+ LM + + Sbjct: 60 PHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLI 119 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +A V IPVT+K R+G D+ I + ++ IH R Sbjct: 120 EATVKAVDIPVTLKMRLGWDENSINAPD---IARRAEASGIQLVTIHGRTRM-------- 168 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGI 242 D+ + + R+ + + NG +++ +A+ L+ D VM+GR P Sbjct: 169 QFYEGRADWDAIRAV-REVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRPW- 226 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 + D + Y + + + H +H+ + A Sbjct: 227 --HAGVLAGAAEPRREDIADIAVEHYRMMLDFYGEAVAIRHARKHLGWYLERFAPA 280 >UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIR6_PETMO Length = 301 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 67/301 (22%), Positives = 120/301 (39%), Gaps = 24/301 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE--EHPV 66 + +APM D+TD R R +TEM++ +II + E + Sbjct: 2 LENQIGLAPMADYTDYPFREICRRFGAK-FTFTEMISVDSIIRENEKVEKMLPQKGEDNI 60 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +QL G++ + AK + I++N CP ++V GA L+ N +L+ D V Sbjct: 61 GVQLFGNETTKFIEAAKSIQHL-ASWIDINAACPVNKVVKKGSGAALLKNPKLLGDIVFN 119 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 ++ + +PV VK R+G D + + + K + I+H R + Sbjct: 120 LKKSIDLPVGVKVRLGYD-----QINIEEVAETVEKAGADYIIVHGRT--------RSQM 166 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILA 244 + + +LK + + +G + S ++ +L D V+V R A NP I Sbjct: 167 YSGIANREILKKLKAKI-TIPLGASGDVFSKKDIDDYLLNYGADFVLVARGAIGNPWIFT 225 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRY 304 + D + + IE S+ + + ++ F GI GA++ RR Sbjct: 226 K----NNYNPTIDERIDTCLEHLKLMIEFYGSEVYAVKKFRKVLMKYFSGIEGAKEIRRN 281 Query: 305 L 305 L Sbjct: 282 L 282 >UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW05_9BACE Length = 307 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 68/301 (22%), Positives = 109/301 (36%), Gaps = 26/301 (8%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSD 74 M TD R R L TEMV+ A+ + L E EHP A Q+ GSD Sbjct: 1 MAGVTDMAFRTICRELGA-GYTITEMVSAKALCYQDKKSIPLLKLGEGEHPCAAQIFGSD 59 Query: 75 PAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA-MRDVVS 132 + + A +A E G D I++N+GCP +V N G+ LM + +A +R Sbjct: 60 EKCMEEAAAIAGEVSGADIIDINMGCPVPKVANSGDGSGLMRDVDKAVRVAEAVVRGAGE 119 Query: 133 IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLD 192 PVTVK R+G D C +H R + + Sbjct: 120 RPVTVKFRLGWDKGS---INCVEFAKAMEAAGVSAVAVHGRT--------RTQMYAGTAN 168 Query: 193 YPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAVDREI 250 + + ++K+ + + NG + A L++ D M+GR + NP + + Sbjct: 169 WDYIREVKQAVS-IPVIANGDVFDGPAAAHILRYTGADMAMIGRGCFGNPWVFQQARAAL 227 Query: 251 FGSSDTDADPVA-----VVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL 305 G P+A VR + + +G+ A ++ + Sbjct: 228 EGEEIPPLPPLAERVDTAVRQF-ELAAAHKGEHIACLEARKQYAWYLKGVAFAGYYKEQI 286 Query: 306 S 306 S Sbjct: 287 S 287 >UniRef50_Q8SUY1 Putative uncharacterized protein ECU07_1170 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SUY1_ENCCU Length = 357 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 100/324 (30%), Positives = 159/324 (49%), Gaps = 31/324 (9%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA--YSEEEHPVALQL 70 S+APM+D T H R F+RL S T+L+TEM+ + +IH D L E + +Q+ Sbjct: 15 ISLAPMMDVTTAHFRRFIRLTSEKTVLFTEMIVSNTVIHVPRDKLRERLGEYDDRTVVQI 74 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GGSD ++ + ++ + GY NLN GCPS RV+ G FGA LM N +LVA+ + + Sbjct: 75 GGSDATSMVEAVRILQGLGYRMFNLNCGCPSSRVKKGSFGAVLMLNRELVAEIINRVYGE 134 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 +++K R G+D+ D +FL F++ + F +HAR+ WL GLSP++NR+ PP Sbjct: 135 TGAVLSLKIRTGVDEHDGVDFLDGFVSHIKKNTPTRTFYVHARRCWLEGLSPQQNRKAPP 194 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDR-- 248 LDY VY +K P L + +NG I E + ++DGVM+GR A +N + ++ Sbjct: 195 LDYASVYAIKSLHPELRIILNGSI--GEGNLDKIHNLDGVMIGRGAIRNVFVFWDIENRM 252 Query: 249 ---------------------EIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHIT-- 285 + SD + R + ++ + + Sbjct: 253 SMCGAERRCKDGRECQPDTGIQKIECSDVEDHKSRRARKVLSVVKEYFDWFSPSEQLKPI 312 Query: 286 --RHMLGLFQGIPGARQWRRYLSE 307 + +L L G + +RR L+E Sbjct: 313 HVQPVLNLMVAKRGCKAYRRRLNE 336 >UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI000058804E Length = 655 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 58/284 (20%), Positives = 103/284 (36%), Gaps = 20/284 (7%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEEEHPVALQLGG 72 AP+ + R + L + + EM ++ G+ A E +QL G Sbjct: 287 APLTTVGNLPFRAVCKKLGAD-ITCGEMAMCTNLLQGQSSEWALLRRHPSEDIFGVQLCG 345 Query: 73 SDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 P + +CA+L D I++NVGCP D V + G+ LM + V+ M V+ Sbjct: 346 GFPDTMTRCAELLNDRLDIDFIDINVGCPIDLVYHKGAGSGLMNRMGKFQEIVRGMSSVL 405 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 IP+TVK R G+ + + + + G + +H R +E R Sbjct: 406 DIPLTVKMRTGVHNDNPVA--HKIVRRIYDWG-ASVVTVHGRT--------REQRYSKLA 454 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAK--AHLQHMDGVMVGREAYQNPGILAAVDRE 249 D+ + + NG I S E++ G M+ R A P I + + Sbjct: 455 DWDYLKDCVQAADPHPFIGNGDILSYEDSNFFREQSGATGQMIARGALIKPWIFTEIKEQ 514 Query: 250 IFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 + ++ +++ + S + R +L Sbjct: 515 RHW-DISSSERFDILQDYINLGLLHWGSDSEGVRKTRRFLLEWL 557 >UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricales RepID=DUS3_COPC7 Length = 676 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 113/305 (37%), Gaps = 30/305 (9%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 EK + W G+ +AP+ + R L + + EM + + G + Sbjct: 303 EKRRLDWKGKTYLAPLTTVGNLPFRRMCVKLGAD-ITCGEMGLATSFLAGSKEEWSLVRR 361 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR---GYDEINLNVGCPSDRVQNGMFGACLMGN 116 E +Q+ G+ P L A++ G D ++LN GCP D V G+ L+ N Sbjct: 362 HPSEKIFGIQVAGNKPHTLVPTAEVIAKEFPTGVDFVDLNCGCPIDLVFKAGSGSALLDN 421 Query: 117 AQLVADCVKAMRDVVS-IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 A + ++ M + IP+TVK R G+ ++ + +S + +H R Sbjct: 422 AGKLGKIIQGMNRALGEIPLTVKIRTGV--KEGRNNAHKLMPRISAEWSASAITLHGRT- 478 Query: 176 WLSGLSPKENREIPPLDYPRVYQLK---------RDFPHLTMSINGGIKSLEEAKAHLQ- 225 ++ R D+ + + D P + + G S ++ + Sbjct: 479 -------RQQRYTKLADWDYIKECVAAVRAREADEDLPPVPIFGGGDCFSSQDYWEKINN 531 Query: 226 -HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHI 284 +DGVM+GR A P I + E + + + ++R Y T + Sbjct: 532 YGVDGVMIGRGALIKPWIFTEIK-ERREWDISATERLQLIRDYVEYGLNHFGSDTAGVNT 590 Query: 285 TRHML 289 TR L Sbjct: 591 TRRYL 595 >UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W6Y9_ATOPD Length = 363 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 73/326 (22%), Positives = 128/326 (39%), Gaps = 25/326 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE---EEHPV 66 + +APM +D R R L Y+EMV+ I G E E + Sbjct: 36 ANPVLMAPMAGVSDGVYRTMARA-GGAGLAYSEMVSVAGIHFGGEKTWELVEPLSTEPDI 94 Query: 67 ALQLGGSDPAALAQCA-KLAEARG--YDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 A+QL GS P + A +++E G I++N+ CP +V G+ L+ +L A+ Sbjct: 95 AVQLFGSKPEQFKEAAAQISERLGNKLALIDINMACPVPKVVKKGEGSALLDTPELAANL 154 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 VKA V++PVTVK R G + E +F + G +H R A Sbjct: 155 VKACLSEVTVPVTVKIRRGRRQDE--EVAPEFARAMEAAG-ASAIAVHGRFAT------- 204 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREAYQNPG 241 ++ V ++ D + + +G + S E+ L+ VM+ R Y NP Sbjct: 205 -QMYRGQAEWETVNRVC-DAVSIPVIGSGDMLSAEDVAHALKETGVTAVMIARGTYGNPW 262 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 I + G + ++ + +++ + ++ F+GIP A W Sbjct: 263 IFKNTQALLEGKTPFVPSVDQMLASFMMHVKLLDAAHIHIARARSLSTWYFRGIPNAAYW 322 Query: 302 RRYLSENAHKAGADINVLEHALKLVA 327 R + + + ++ AL++ Sbjct: 323 RGK----SVRCVTAQDFIDLALEIKE 344 >UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamiellales RepID=Q010A0_OSTTA Length = 639 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 61/299 (20%), Positives = 118/299 (39%), Gaps = 20/299 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---Y 59 ++ + + G+ VAP+ + R L + + +EM ++ G A Sbjct: 261 KRVSLEFKGKIYVAPLTTVGNLPFRRICTDLGAD-ITVSEMAMASNLLKGDRKEWALVRR 319 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +Q+ G P + +CA+L + D I++N+GCP D V G LM + Sbjct: 320 HPIEKCFGIQICGGYPDLMTRCAELLDNEVHCDFIDVNMGCPIDGVCAKGAGGSLMRDTD 379 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + V++M V S PVT+K R+G D S D I+ G +H R Sbjct: 380 RLKRVVRSMTSVSSTPVTIKLRMGYFDDPSRYVAHDIISKAKSWGAYAA-TLHGRT---- 434 Query: 179 GLSPKENREIPPLDYPRVYQLKR--DFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGR 234 +E R D+ +++ +L + NG + + ++ + + + M+GR Sbjct: 435 ----REQRYSRLADWSYIHRCADASALNNLPLIGNGDVYTYQDWNEQIANEKISTCMIGR 490 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 A P ++ + + + + + + + Y +E S + R++L Sbjct: 491 GAIIKPWLMTEIKEQRHW-DISANERLDLFKDFVHYGLEHWGSDSVGVEKTRRYLLEWM 548 >UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJX3_HALO1 Length = 348 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 72/311 (23%), Positives = 125/311 (40%), Gaps = 24/311 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEE 63 + +APM TD R L TE + A+ G D L S + Sbjct: 12 LTIDTPVLLAPMAAVTDLPFRTICERFGV-GLTITEFLKATALCDGDAEVVDKLTASLDG 70 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 +Q+ G + L Q A+LA G I++N+GCP+ RV G GA LM +L A+ Sbjct: 71 VRFGVQIYGREVEPLVQAAQLALDIGASLIDINMGCPAKRVVAGECGAALMQWPELSAEL 130 Query: 124 VKAMRDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 V+A+ V +PVTVK R G + + +F + G +M +H R Sbjct: 131 VRAVVASVPDSVPVTVKHRAGWNPLNRNA--PEFACAMVEAG-AQMVTVHGRT------- 180 Query: 182 PKENREIPPLDYPRVYQLKRDFP-HLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQ 238 + +D + +++ P + + NG + +++ +H D VM+GR A Sbjct: 181 -RTQGFAGSVDLEVIRRVREAVPARVPVVGNGDVVCVDDYLRMREHTGCDAVMIGRGALG 239 Query: 239 NPGILAAVDREIFGSSDT-DADPVAVVRAMYPYIERELSQG---TYLGHITRHMLGLFQG 294 NP + ++ G D D R ++ + + + + +G Sbjct: 240 NPWLFRSLHALAHGLPDPGRPDMAERYRVFCEHVALLYALKGGPKLIHEVRKACAWYAKG 299 Query: 295 IPGARQWRRYL 305 + GA +R+++ Sbjct: 300 LDGADGFRQHV 310 >UniRef50_Q9T0J6 tRNA-dihydrouridine synthase 3-like n=10 Tax=Magnoliophyta RepID=DUS3L_ARATH Length = 700 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 64/321 (19%), Positives = 118/321 (36%), Gaps = 34/321 (10%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---Y 59 +K + + + +AP+ + R ++L + + EM ++ G+ A Sbjct: 339 KKKLIDFRDKLYLAPLTTVGNLPFRRLCKVLGAD-VTCGEMAMCTNLLQGQASEWALLRR 397 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +Q+ GS P +++ +L + D I++N+GCP D V N G+ L+ Sbjct: 398 HSSEDLFGVQICGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALLNKPL 457 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + + V+ +V P+T+K R + + I + G IH R Sbjct: 458 RMKNIVEVSSSIVETPITIKVRTAFFEGK--NRIDSLIADIGNWGATA-VTIHGR----- 509 Query: 179 GLSPKENREIPPLDYPRVYQL-KRDFPHLTMSINGGIKSLEEAKAH---LQHMDGVMVGR 234 ++ R D+ +YQ K +L + NG + S + H + M+ R Sbjct: 510 ---SRQQRYSKSADWDYIYQCTKNATTNLQVIGNGDVYSYLDWNKHKSDCPELSSCMIAR 566 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHML----- 289 A P I + + T + + +++ + + T TRH L Sbjct: 567 GALIKPWIFTEIKEQRHW-DITSGERLNIMKDFVRFGLQHWGSDTKGVETTRHFLLEWLS 625 Query: 290 --------GLFQGIPGARQWR 302 GL IP WR Sbjct: 626 YTFRYIPVGLLDVIPQQINWR 646 >UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococcaceae RepID=C7H613_9FIRM Length = 340 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 62/259 (23%), Positives = 109/259 (42%), Gaps = 18/259 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAY 59 + ++ R PM +TD R + +EMV++ A+++G L Sbjct: 41 KIREISLPHRAVFGPMAGFTDAPARRLMAQHGA-GFTVSEMVSSRALVYGDHKTVSLLKA 99 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 P +Q+ G P + Q A E +D +++N+GCP+ ++ +G G+ LM + Sbjct: 100 EPNGAPYGVQIFGEVPEIMGQAAAAVEQYAFDFLDINMGCPAPKIVSGGAGSKLMLDPDR 159 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 V+ + S PVTVK R G D + C + + +HAR Sbjct: 160 CGRIVEEVVKNTSRPVTVKMRKGWDAEHVTAVEC---AKACEQAGAVLIAVHART----- 211 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAY 237 +E P +D + +K D H+ + NG I++ E+A ++ DGVM+ R A Sbjct: 212 ---REQMYTPGIDPSIIAAVK-DAVHVPVLGNGDIRTAEDAVRMVEETGCDGVMIARAAL 267 Query: 238 QNPGILAAVDREIFGSSDT 256 +P + V+ + G Sbjct: 268 GDPWLFERVNAALEGLPRP 286 >UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB06_PLALI Length = 381 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 74/329 (22%), Positives = 130/329 (39%), Gaps = 24/329 (7%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEH 64 R+ +AP+ +T R R LR L L T++V ++ +A S + Sbjct: 46 QIPSRYGLAPLAGYTQRPFRVALRELGGMGLATTDLVHAVKLLSNNAFSQQLIATSLLDQ 105 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+++QL G+DP +A A+ E GY+ ++LN+GCP +V + GA LM + V Sbjct: 106 PLSVQLFGADPTHVATAARWLEDLGYEGVDLNMGCPMAKVNSQGGGARLMCDPTGATRLV 165 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 + VSIPVTVK R+G D Q + + IH R G S K Sbjct: 166 ALVVASVSIPVTVKMRLGWDAQS---LSAPLLARQFEEVGAAAITIHGRTR-AQGFSGKV 221 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGI 242 +R + + + NG ++++E+A + + V +GR A +P I Sbjct: 222 SR-------EGIAATVAAVQSIPVIGNGDVRTVEDAISMRRETGCAAVAIGRGAMLDPWI 274 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQ-GTYLGHITRHMLGLFQGIPGARQW 301 + + P ++ + + + G + R G + G Sbjct: 275 FRKLHDFEMTGQYAEPGPEEQIQFLVTHFREMVDLFGEQATRLFRKFAGWYGARLG---- 330 Query: 302 RRYLSENAHKAGADINVLEHALKLVADKR 330 + ++ + L ++VA+ R Sbjct: 331 ---IPQDLEDRLRRVESLSEFEEIVAEIR 356 >UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadaceae RepID=C6XJQ7_HIRBI Length = 337 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 138/335 (41%), Gaps = 24/335 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY-LAYSEEEH 64 DV + +APM TD R ++ TEM+ + G+ D ++ E+ Sbjct: 6 DVEINDAVFLAPMSGATDAPFRRQASRFGAP-VVITEMIAGSELATGRQDMVWRITKPEN 64 Query: 65 --PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 P +QL G DP + + A+++ + G D I++N+GCPS +V G GA LM + L + Sbjct: 65 TFPFVVQLAGRDPKWMYEAARISASAGADIIDINMGCPSRQVTGGQSGAALMRDLDLARE 124 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 + A R+ +PV+VK R+G DD + + ++ +H R Sbjct: 125 LIIAAREGGGLPVSVKMRLGWDDDTLNAPAL---AKICEEEHVKLITVHGRT-------- 173 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQNP 240 + D+ +V ++K +L + +NG I S + AK L DGVM+GR A P Sbjct: 174 RCQFYTGKADWNKVKEVKLA-SNLPLIVNGDIDSSKTAKQAILLSQADGVMIGRAALGRP 232 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERE---LSQGTYLGHITRHMLG---LFQG 294 +L + ++ + + ++ + + +H+ + Sbjct: 233 WLLGKIASDLANRPYIEPTWSEKLSSLCEQVSDSVLLYGDRLGVRVFRKHLAAFIDYSKE 292 Query: 295 IPGARQWRRYLSENAHKAGADINVLEHALKLVADK 329 I + R L + ++ +V+ L A K Sbjct: 293 IRLNTEDRNELRGRFCRISSENDVISAITSLEAPK 327 >UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME Length = 604 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 63/295 (21%), Positives = 109/295 (36%), Gaps = 21/295 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---Y 59 K V + + ++P+ + R + + + EM ++ G G A Sbjct: 249 HKPAVDFREKLVLSPLTTLGNLPFRRICKEFGAD-ITCGEMACAQPLLKGMGQEWALTKR 307 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 + E +QL G++P L Q A++ E D I+LN+GCP D + G+ LM Sbjct: 308 HQSEDVFGVQLCGNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIYQQGGGSALMRRTN 367 Query: 119 LVADCVKAMRDVVS-IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 ++ V++ + +P TVK R GI S + + V G +H R Sbjct: 368 ILELTVRSCAALSDRLPFTVKMRTGIYADKSVA--HELLPLVEEWG-ASAVTLHGR---- 420 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL---QHMDGVMVGR 234 +E R ++ + + + + NG I S E+ H+ VM+GR Sbjct: 421 ----SREQRYTKHANWAYIEECAAKAKCMPVIGNGDILSYEDYMERRTLAPHVCSVMIGR 476 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHML 289 A P I + + S + +++ Y T TR L Sbjct: 477 GALIKPWIFQEIKEKQAWSPSSGQ-RYEMLQKFCNYGLEHWGSDTKGVETTRRFL 530 >UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genome shotgun sequence n=4 Tax=Intramacronucleata RepID=A0EG06_PARTE Length = 360 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 126/317 (39%), Gaps = 33/317 (10%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEEEHPV 66 S +F APM+D ++ R R TL YT M+ + + K ++ E+ P+ Sbjct: 17 SPKFICAPMVDQSELAFRMLTRKYGT-TLAYTPMLHSRIMTESKSYKDEFFTTCPEDRPL 75 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 QL G DP L + A + + + D I++N+GCP + G++GA L+ + V VK Sbjct: 76 FAQLCGHDPQVLIKAALMIQDQ-CDAIDINLGCPQGIARKGLYGAYLLEKREQVLTIVKE 134 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 ++ +++PVT K R+ D + + + D C + +H R + Sbjct: 135 LKQNINVPVTCKIRMFKDRKRTLDLTKDIQEA-----GCSILTVHGRT------KEQNKD 183 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILA 244 + D+ + ++K+ + + NGGI + + + LQ D VM +NP + + Sbjct: 184 FVGQCDWTIIAEIKQ-ILQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENPALFS 242 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLG-LFQGIPGARQWRR 303 + + Y++ L I H+ L+ G+ R Sbjct: 243 G-------------EIKDLNDLALEYMQFAKQYNARLAEIKAHLFKLLYTGLQIFTDLRS 289 Query: 304 YLSENAHKAGADINVLE 320 L V+E Sbjct: 290 KLGSAKTYEEHLEVVIE 306 >UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aquifex aeolicus RepID=DUS_AQUAE Length = 316 Score = 237 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 137/321 (42%), Gaps = 25/321 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG--KGDYLAYSEEEHPVA 67 G +APM +T R R L + YTE+++ ++ ++EEE P+ Sbjct: 5 KGEVILAPMASYTHSAFRRLCRRLGADR-TYTELISAVGVLRNGIPMKLAYFTEEERPIH 63 Query: 68 LQLGGSDPAALAQC-AKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q+ GS+P +AQ +A+ D I++N GC +V ++ L+ + VK Sbjct: 64 IQVFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPLMGEVVKE 123 Query: 127 MRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + + IPV+ K R+G ++D E + + + K + IHAR A G S K Sbjct: 124 TVEALKPYGIPVSAKIRLGF-EKDEVERIVEELQ----KAGVSLIAIHARTA-KQGFSGK 177 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPG 241 + R+ + K+ + + +G +KS + + + DGVMVGR A NP Sbjct: 178 AL-------WHRIKEAKK-VASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPW 229 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 I + + + + + +S+ I ++ + +G+P +R+ Sbjct: 230 IFKEFKEKRDIEVGLK-ERMDFILEELSMMTEYMSREKACAEIKSQIVQILKGVPNSREL 288 Query: 302 RRYLSENAHKAGADINVLEHA 322 + Y+ +A + +E A Sbjct: 289 KTYI-VHAENCKELVKRIEEA 308 >UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8N483_COPC7 Length = 561 Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 66/301 (21%), Positives = 117/301 (38%), Gaps = 31/301 (10%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI-------IHGKGDYLAYSEE 62 S ++ VAPM+D ++ R R L+YT M+ +A EE Sbjct: 33 SPKYIVAPMVDQSELAFRRLCRQYGA-QLIYTPMINAKMFTDPVNKSYRASAFDIASGEE 91 Query: 63 -----EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 + P+ +Q +DP L Q AK+ E D +++N+GCP D + G +G+ L + Sbjct: 92 GDMASDRPLIVQFCANDPDQLLQSAKVVEKY-CDAVDINLGCPQDIAKRGRYGSFLQDDW 150 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 L+ + + +SIPVT K R+ D + + E+ + + ++ H R Sbjct: 151 PLIYSMINTLHVNLSIPVTAKFRVFPDVEKTVEYA-----KMLERAGAQILTCHGRIREQ 205 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGRE 235 G + D+ ++ +K + + NG I ++ L+ DGVM Sbjct: 206 RG------QNTGLADWSKIRAVKEAV-KVPVFANGNILFQDDIARCLEETGCDGVMSAEG 258 Query: 236 AYQNPGILAAVDREIFGSSDTDAD---PVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 NP + +D D + + Y I L T + + H+ L Sbjct: 259 ILYNPALFYGLDAPSSSPKPPTTDLYPMHTTLASQYLSIVLSLKTKTPVSAVKGHLFKLM 318 Query: 293 Q 293 + Sbjct: 319 R 319 >UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E1T8_9CHLO Length = 662 Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 64/305 (20%), Positives = 117/305 (38%), Gaps = 33/305 (10%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---Y 59 EK + + G+ +AP+ + R + + + EM ++ G+ A Sbjct: 297 EKKTIDFRGKLYLAPLTTTGNLPFRRICKRYGVD-ITCGEMAMVTNLLQGQPAEWALLRR 355 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-----GYDEINLNVGCPSDRVQNGMFGACLM 114 E Q+ G ++++C +L E G D I++N+GCP D V N G+ L+ Sbjct: 356 HPSEDIFGAQVCGGYSDSMSRCMQLLEDEVVSKGGLDFIDINMGCPIDLVCNKGAGSMLL 415 Query: 115 GNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK 174 + V+A ++S P+T+KTR+G D + I + G M +H R Sbjct: 416 EKPARMEQLVRASAPLLSCPLTLKTRMGYFDNKRVA--HEIIPKMVDWGLAGM-TLHGR- 471 Query: 175 AWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGV---M 231 ++ R D+ + Q R P + + NG + S + +++ GV M Sbjct: 472 -------SRQQRYSRLADWDYINQCARASP-IQLIGNGDVFSYHDYVKNVEG-QGVATCM 522 Query: 232 VGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY----IERELSQGTYLGHITRH 287 + R A P I + D D + + Y +E + + + R Sbjct: 523 IARGALIKPWIFTEIKERR----DWDISATERLDMLKDYAAFGLEHWGADARGVANTRRF 578 Query: 288 MLGLF 292 +L Sbjct: 579 LLEWL 583 >UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera RepID=Q17M24_AEDAE Length = 578 Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 119/301 (39%), Gaps = 24/301 (7%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA--- 58 PE+ +++ + ++P+ + R + + + EM + II+G A Sbjct: 220 PERKKINFKDKLYLSPLTTVGNLPFRRICKEYGVD-ITCGEMACSVPIINGMMQEWALTK 278 Query: 59 YSEEEHPVALQLGGSDPAALAQCAK-LAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 E +Q+ G + ++ + +AE D ++LN+GCP D + N G+ L+ Sbjct: 279 RHPSEDLFGVQICGHNQKLVSYATQVIAEHADVDFVDLNLGCPIDLIFNQGGGSALLRRR 338 Query: 118 QLVADCVKAMRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK 174 ++ +++ ++ TVKTR+GI + + G + IH R Sbjct: 339 NILEVMIQSCSRILADYDKEFTVKTRMGIYANK--YVAHELVPKFEEWG-ASLVTIHGRT 395 Query: 175 AWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLE---EAKAHLQHMDGVM 231 KE R D+ + Q + + + NG I + +AK + GVM Sbjct: 396 --------KEQRYTKKADWDYIRQCAQQAKSIPIYGNGDIFCYQDYLDAKERAPELAGVM 447 Query: 232 VGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLG 290 VGR A P + + + + ++ + +++ Y +E S + + R +L Sbjct: 448 VGRGALIKPWVFQEIKEQKNLDPSS-SERMDMLKRYVNYGLEHWGSDTKGVENTRRFLLE 506 Query: 291 L 291 Sbjct: 507 W 507 >UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCCF0E Length = 429 Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 74/376 (19%), Positives = 122/376 (32%), Gaps = 73/376 (19%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFL----------------------------------- 30 D+ +APM T+ R Sbjct: 14 DLTVDVPVVLAPMAGVTNAAFRQLCAEQGALRGSQARTSGQALRGSQARTSGQALRGSQA 73 Query: 31 ------------RLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSDP 75 R + L EM+T+ ++ G L ++ E ++QL G DP Sbjct: 74 RTSGQALRGSQARTSGQAGLYVCEMITSRGVVEGDRTSLGMLTFAPNERVRSVQLYGIDP 133 Query: 76 AALAQCAKLAE-ARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV--- 131 A + + + G D ++LN GCP +V GA L A L+ + Sbjct: 134 ATVGRAVAILCGDHGVDHVDLNFGCPVPKVTRKGGGAALPWKATLLGRILTEAVAAAAPF 193 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 +PVT+KTR GIDD ++ C +H R A Sbjct: 194 GVPVTMKTRKGIDDDHLTYLD---AGHIAEDSGCAAIALHGRTA--------VQHYSGEA 242 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILAAVDRE 249 D+ + LK + + NG + +A ++ DGV+VGR P + + Sbjct: 243 DWAAIAALKAAVS-IPVLGNGDVWEAADALRMVRETGCDGVVVGRGCLGRPWLFRDLAAA 301 Query: 250 IFGSSDTDADPV-----AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRY 304 G A P A++R + L + +H+ +G P R+ Sbjct: 302 FTGEETVPALPTLGEVMAIMRRHAELLGGWLGEERGCVEFRKHVAWYLKGFPAGPSVRQR 361 Query: 305 LSENAHKAGADINVLE 320 L + + A D ++E Sbjct: 362 LGQVSSYAALDELLVE 377 >UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomycota RepID=DUS1_YEAST Length = 423 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 69/310 (22%), Positives = 118/310 (38%), Gaps = 25/310 (8%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAII------HGKGDYLAYSEEEHPVA 67 VAPM+D ++ R R TL YT M+ L S + P+ Sbjct: 32 IVAPMVDQSELAWRILSRRYGA-TLAYTPMLHAKLFATSKKYREDNWSSLDGSSVDRPLV 90 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +Q +DP L AKL E + D ++LN+GCP + G +G+ LM L+ + + + Sbjct: 91 VQFCANDPEYLLAAAKLVEDK-CDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLINTL 149 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + +PVT K RI D + S ++ V G + +H R G ++ Sbjct: 150 HKNLKVPVTAKIRIFDDCEKS----LNYAKMVLDAG-AQFLTVHGRVREQKG------QK 198 Query: 188 IPPLDYPRVYQLKRDFPHLTM-SINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILA 244 ++ + L+ + P T+ NG I E+ ++H D VM NPG+ Sbjct: 199 TGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFN 258 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG-IPGARQWRR 303 + D ++R + ++ + H + + +P R Sbjct: 259 VGQTKNKEKIFPRVDK--IIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIRS 316 Query: 304 YLSENAHKAG 313 L+ KA Sbjct: 317 TLATMNAKAT 326 >UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=Schistosoma mansoni RepID=C4QMR1_SCHMA Length = 441 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 128/326 (39%), Gaps = 38/326 (11%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPV 66 S ++ +APM+D ++ R R L +T M+ + A + + L ++ E+ P+ Sbjct: 9 SPKYVLAPMVDGSELAWRMLGRKYGV-QLTFTPMINSTAFLINMKYRRSCLQFASEDRPL 67 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q + P +CAKL + D ++LN+GCP + G +GA L + + + Sbjct: 68 IVQFCANSPDTFVRCAKLVQPF-CDAVDLNLGCPQGIAKRGHYGAFLQDEWNSLKEIISR 126 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 +++PVT K RI D + + ++ + M +H R + G + Sbjct: 127 ASLELNVPVTCKIRIFSDVERTVQYA-----KLLEAAGASMLTVHGRTREMKG------Q 175 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILA 244 + D+ ++ +K + + NG I+ L + L D VM NP + Sbjct: 176 KTGLADWNQIRAVKEAV-KIPVIANGNIQYLSDVHQCLDSTKADAVMSAEGHLHNPALFL 234 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF-QGIPGARQWRR 303 + + + Y++ T + I H+ L + ++R Sbjct: 235 GIQPC-------------IYDMCFEYLDLVEKYPTSMQIIRGHIFKLCHHALDEHSEYRS 281 Query: 304 YLSENAHKAGADINVLEHALKLVADK 329 + + G ++ L+ +A++ Sbjct: 282 LIGTSQSTKG-----IKEILQKMANQ 302 >UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=Ixodes scapularis RepID=B7PPV8_IXOSC Length = 483 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 117/305 (38%), Gaps = 39/305 (12%) Query: 1 MPEK-------TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG- 52 MPEK T S R+ VAPM+D ++ R R L YT M+ + Sbjct: 1 MPEKLAGYEFWTRTLKSPRYVVAPMVDQSELAWRLLGRRHGA-QLCYTPMLHASVFLKDP 59 Query: 53 --KGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFG 110 + D LA +E+ P+ +Q +DP L Q ++L ++LN+GCP + G +G Sbjct: 60 KYRRDALASCDEDQPLVVQFCANDPEVLVQASRLVVGHCC-AVDLNLGCPQAIARAGHYG 118 Query: 111 ACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFII 170 A L + L+A V+ + V +P+T K R+ E + + G C++ + Sbjct: 119 AFLQDDWDLLARMVQRVHTQVDVPITCKVRVFP----EVEKTVRYAQMLEAAG-CQVLTV 173 Query: 171 HARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--D 228 H R G + + +KR + + NG I+ LE+A+ L+ D Sbjct: 174 HGRTREQKGPH------TGLASWEHIRAVKRSV-KIPVIANGNIQYLEDAERCLRETGAD 226 Query: 229 GVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHM 288 VM NP + ++ A Y+ ++ H+ Sbjct: 227 AVMSAEGHLHNPYLFTGRLAPVW-------------EASLEYLCLVRDHPCPASYVRGHL 273 Query: 289 LGLFQ 293 L Sbjct: 274 FKLMH 278 >UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S141_OSTLU Length = 307 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 69/290 (23%), Positives = 120/290 (41%), Gaps = 22/290 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPV 66 + R+ VAPM+D ++ R + TL YT M+ + + + + S + P+ Sbjct: 15 NPRYHVAPMVDQSELAFRELCKRYGA-TLGYTPMIHARLFVESPKYRREIFSTSTRDRPL 73 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 Q +DP L + A + D +++N GCP + G +GA LM + + V ++ Sbjct: 74 LAQFCANDPEILLRAATMIAPY-CDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEALIRK 132 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + + + +PVT K R+ D E + V G ++ +H R + Sbjct: 133 LDEELPVPVTAKIRVYDD----LETTLKYAKMVEAAG-AQIVAVHGRTREQKRCADIR-- 185 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILA 244 ++ + +K D + + NG I+SL EA+A L+ DGV+ NP + + Sbjct: 186 ----ANWAYIRAIK-DALKVPVLANGDIRSLAEARACLEATGADGVLSAEPLLSNPALFS 240 Query: 245 A---VDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 G + D VA V M Y + S T +I H+ L Sbjct: 241 DPPFYAAPTDGYAPIPLDGVAAVDLMIEYFDICKSYTTSFSYIRGHVWKL 290 >UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovibrionaceae RepID=A1VHK2_DESVV Length = 449 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 117/315 (37%), Gaps = 27/315 (8%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYL 57 +P D W +AP+ ++D R R + TEMV+ +I+ G D L Sbjct: 27 LPISPDAPW-----LAPLAGYSDLSFRLLCRKAGA-AVCCTEMVSAKGLIYYSPGTRDLL 80 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 A + E+ P+ +QL G DP + + + +G+ +LN+GC +V GA ++ + Sbjct: 81 ATTPEDAPLVVQLFGCDPDIMVRAMEPLLEQGFRWFDLNMGCSVPKVVKTGCGAAMLRDV 140 Query: 118 QLVADCVKAMRDVVSI-PVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 +AM V K R+G D G G +H R A Sbjct: 141 PQALAVARAMLRTAGAGRVGFKFRLGWDVGQEVWADLGRALADLGAGWV---TLHPRYA- 196 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGR 234 + + +L R + + +G + + + L+ VM R Sbjct: 197 -------RQGFSGEARWSTLGELVRAVS-VPVIASGDLFTAADGVRCLRETGVASVMYAR 248 Query: 235 EAYQNPGILAAVDREIFGSSDTDADP---VAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 A +PG+ A + G D P A++ + + L + + Sbjct: 249 GALNDPGVFHAHRERVAGRPDPGYTPQRLRALITRHAELARQYAPGRSALLKMRTFVPRY 308 Query: 292 FQGIPGARQWRRYLS 306 + +PGAR R++L+ Sbjct: 309 VRHLPGARALRQHLA 323 >UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Planctomycetaceae RepID=D2R6Z1_9PLAN Length = 345 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 115/333 (34%), Gaps = 28/333 (8%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI--IHGK-----GDYLAY 59 V APM +T+ R +R L TEMV +H Sbjct: 9 VKVDPPILQAPMAGYTNYAYRQMVREFGGAGLQATEMVNASGFAWLHEHEAEHPDRLWGV 68 Query: 60 SEEEHPVALQLGGSDPAALAQCA-KLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNA 117 EE P+A+Q+ +DPA LA+ +LA +++N GCP V G+ L+ Sbjct: 69 KEEARPLAVQMWDNDPATLAKVGERLANELHVSVVDINFGCPVKDVTEKAHSGSYLLKFP 128 Query: 118 QLVADCVKAMRDVV-SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 +A V+ + PVT K R+G I V +H R A Sbjct: 129 DRIAQIVERVVKACAPTPVTAKIRLGCSRDAINAIE---IAKVVESAGAAALTVHGRTA- 184 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGR 234 + D+ R+ ++K + + NG + S E+ + +DGVM+ R Sbjct: 185 -------ADFFRGTADWNRIAEIKPHLKKIPLIGNGDLDSPEKVIEAFRRYGVDGVMIAR 237 Query: 235 EAYQNPGILAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLG 290 + P + + G T + + Y + + + Sbjct: 238 ASMGRPWLFRQAAAALRGEPVPPDPTAEEQRLTMLRHYELTCARFGEQKGTLLMRKFACN 297 Query: 291 LFQGIPGARQWRRYLSENAHKAGADINVLEHAL 323 G PGAR +R ++ + NV+E Sbjct: 298 YATGRPGARTFRAMVANVFTREDF-FNVVERYF 329 >UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacteria RepID=A7I0T0_CAMHC Length = 310 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 66/323 (20%), Positives = 124/323 (38%), Gaps = 36/323 (11%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY---SEEEHPV 66 + +AP+ ++D R ++ + +EM++ A++ L SE E P Sbjct: 6 NHPLFLAPLAGFSDLPLRSVVKRFGCDA-TVSEMISANALVFCSEKSLKMIKKSENETPY 64 Query: 67 ALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +Q+ GSDP + Q ++ G D I+LN GCP +V G+ L+ N L++ ++ Sbjct: 65 FVQIAGSDPKIIKQAVEILNKIDGIDGIDLNCGCPVPKVVRQNAGSALLQNLDLLSKLIE 124 Query: 126 AMRDVVSIPVT-VKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 ++ + T K R+G D ++ N + +HAR + Sbjct: 125 IIKKTSNKKYTSAKVRLGFDTKNPVNIALAVQNA-----GADFIAMHART--------RA 171 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA--HLQHMDGVMVGREAYQNPGI 242 DY + K + + NG I S + A +L D +M+GR NP + Sbjct: 172 GGYSAKPDYEAIAAAK-SAVKIPLIANGNINS-QNANQILNLTKADALMIGRATIGNPWV 229 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 + + + D ++ I+ G + +H+ +G A +R Sbjct: 230 FYEIKNQKTVAVDEKIKKEIILAHFDEMIKFYGDHGAVI--FRKHLHEYSKGYADATNFR 287 Query: 303 RYLSENAHKAGADINVLEHALKL 325 +IN + +A K+ Sbjct: 288 -----------CEINTITNAEKM 299 >UniRef50_C5KTF9 tRNA-dihydrouridine synthase A, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KTF9_9ALVE Length = 403 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 125/348 (35%), Positives = 191/348 (54%), Gaps = 38/348 (10%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG------DYLAYSEEEHPVALQLG 71 M+D +DR R F+RLLS ++TEM+ A++H + + ++E EHP+ QLG Sbjct: 1 MVDVSDRDFRMFMRLLSSKCEVWTEMLVDQALVHNEDIPRQLEKIIGFTEAEHPIVCQLG 60 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQLVADCVKAMRDV 130 G DP+ LA A++A RGYDE+NLNVGCPS RV G LM +LV DC++ + D Sbjct: 61 GHDPSKLAAAARIAHRRGYDEVNLNVGCPSSRVAGHGLMGVALMKTPELVRDCLRTLDDE 120 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTV------SGKGECEMFIIHARKAWLSGLSPKE 184 V V++KTR+G+DD D+ EF F+ T+ S + I+H RKAWL GLSP E Sbjct: 121 VPH-VSIKTRLGVDDLDTEEFTRSFLGTILPPLASSAAQQPYRVIMHCRKAWLQGLSPAE 179 Query: 185 NREIPPLDYPRVYQLKRDF-PHLTMSINGGIKSLEEAKAHLQ------HMDGVMVGREAY 237 NR +PPLDYPR ++ F + ++NGGI++L +AK L +++GVM+GR AY Sbjct: 180 NRTVPPLDYPRACRVLGAFGSRVRWTLNGGIETLWQAKDVLTSEIAPANLEGVMIGRAAY 239 Query: 238 QNPGILAAVDREIFGSSDTDA---DPVAVVRAMYPYI--------ERELSQGTYLGHITR 286 NP +L D ++G + A++ A Y+ + L+ GT+ + + Sbjct: 240 NNPCMLHDADVYLYGCDENPVSAESRGALLEAYADYLHDRYPLESDSPLTPGTFATSL-K 298 Query: 287 HMLGLFQGIPGARQWRRYLSE--NAHKAGADI---NVLEHALKLVADK 329 LG F G R +R + AHK ++ +V+ A++ + ++ Sbjct: 299 PTLGTFANKSGNRMYRHTIDGLIKAHKRDREVGPGDVVRMAMREMPEE 346 >UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=Micromonas RepID=C1E909_9CHLO Length = 353 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 63/307 (20%), Positives = 121/307 (39%), Gaps = 27/307 (8%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPV 66 S +F VAPM+D ++ R R T YT M+ + + + + P+ Sbjct: 34 SPKFHVAPMVDQSELAFRELCRRHGA-TCAYTPMIHARLFVEDLKYRKEIFTTHINDRPL 92 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q +DP L + A + D +++N GCP + G +GA LM + + V + + Sbjct: 93 LVQFCANDPDMLLKAASIVAPH-CDGVDINFGCPQRIAKRGRYGAFLMDDWETVHNLINK 151 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + +S+PVT K R+ D + S ++ + ++ +H R + Sbjct: 152 LDKHLSVPVTAKIRVYDDLETSLKYA-----KMVEAAGAQLIAVHGRTREQKRAADVR-- 204 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILA 244 ++ + ++K+ + + NG I++L EA+ L+ DGV+ +NP + + Sbjct: 205 ----ANWAFIREIKKQL-KVPVLANGDIRTLAEAEKCLEATGADGVLSAEPLLENPSLFS 259 Query: 245 AVDREIFGSSDTDADPVA---VVRAMYPYIERELSQGTYLGHITRHMLG----LFQGIPG 297 S PV ++ Y+E + T L + H+ + Sbjct: 260 D-PPLYSPSDPAHPLPVEGDVNCELLHEYLEITRTYQTPLRMVKGHVHNMVGSWLKEFTD 318 Query: 298 ARQWRRY 304 R W Sbjct: 319 LRDWLNK 325 >UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z0J5_9GAMM Length = 352 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 73/328 (22%), Positives = 137/328 (41%), Gaps = 28/328 (8%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGA-IIHGKGDYLA--YSEEEH 64 + ++APM TD R L + EM+T+ ++ + L +S + Sbjct: 21 KLANPVALAPMAGVTDLPMRELCVELGA-GMAVAEMLTSDPKLLASRKSSLRRRHSAKGG 79 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 ++Q+ GS+P LA A+L G D I++N+GCP+ +V G+ L+ + VA+ + Sbjct: 80 LRSVQIVGSEPQQLANAARLNADDGADVIDINMGCPAKKVCKKAAGSALLADEDRVAEIL 139 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 KA+ V +PVT+K R G+ Q I ++ ++ +H R + Sbjct: 140 KAVVSAVDVPVTLKIRTGVSPQQRNGVA---IAKIAEDAGIQLLTVHGRT--------RA 188 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREAYQNPGI 242 +R +Y + ++ D + + NG I + +A A LQ G+M+GR A P + Sbjct: 189 DRFKGEAEYHTIERIV-DAVSIPVLANGDITTPAQALAVLQKTGAAGIMIGRAALGRPWL 247 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYI-ERELSQGTYLG--HITRHMLGLFQGIPG-- 297 A+ + + G M ++ G ++G +H+ I Sbjct: 248 PGAIAQSLAGLRTPLPSLAERFLQMRCHLTALHDFHGDFMGVRIARKHVGWFIDAIENDV 307 Query: 298 ---ARQWRRYLS--ENAHKAGADINVLE 320 +W+R+ + ++A + LE Sbjct: 308 ASSFTEWKRHFNALQDADAQQTLLQTLE 335 >UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobiales RepID=B0UHM8_METS4 Length = 358 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 83/304 (27%), Positives = 130/304 (42%), Gaps = 31/304 (10%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE--HPVALQLG 71 +AP+ TD H R R + + +EMV + G + +E E P +QL Sbjct: 31 LLAPLSGVTDLHLRRIARRCGASA-VVSEMVAAEDLARGSAEARLRAEGEGVRPHVVQLA 89 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G DP +A+ A+LAEA G D I++N+GCP+ +V G G+ LM + A + A+R+ V Sbjct: 90 GCDPRWMAEGARLAEANGADVIDVNMGCPAKKVTGGEAGSALMRDLDHAARLLAAVREAV 149 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 ++PVTVK R+G D D+ D G +H R ++ Sbjct: 150 AVPVTVKMRLGWD--DASRNAPDLARRAEALG-LSAVTVHGRT--------RQQFYAGRA 198 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAVDRE 249 D+ + + + + NG + SL EA+A L VM+GR A P ++ AV Sbjct: 199 DWAAIRAVVEAVS-IPVVANGDVGSLAEARACLAESGAAAVMIGRAAVGRPWLVGAVAAG 257 Query: 250 IFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENA 309 + G+ A + E +L L+ G R R++L+ A Sbjct: 258 LRGAPAPALTRAAQADLAGEHYEG--------------LLALYGVAMGVRHARKHLAAYA 303 Query: 310 HKAG 313 AG Sbjct: 304 DHAG 307 >UniRef50_Q4P1U2 tRNA-dihydrouridine synthase 3 n=4 Tax=Eukaryota RepID=DUS3_USTMA Length = 867 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 114/305 (37%), Gaps = 20/305 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 EK ++W G +AP+ + R + + EM + +HG Sbjct: 482 EKRRLNWRGELYLAPLTTTGNLPFRRICTGYGSD-IHCGEMGLAESFLHGNAAEWSLVRR 540 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR---GYDEINLNVGCPSDRVQNGMFGACLMGN 116 E E QL G P L A+ +A G D +++N GCP D V N G+ L+ + Sbjct: 541 HESERIFGTQLCGGKPDLLVPVAEALKAEVGDGLDFVDINCGCPIDLVFNKGAGSALLDH 600 Query: 117 AQLVADCVKAMRDVV-SIPVTVKTRIGIDDQDSYEFLCD--------FINTVSGKGECEM 167 ++ V+ M V+ P+T+K R G + + + T+ G+ + Sbjct: 601 PTKLSKIVRGMNAVLGDTPLTIKLRTGTGAKQTTHKIFAKAQTEWRVAAATLHGRSRKQR 660 Query: 168 FIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ-- 225 + A +++ + + + + + + + + NG + S ++ ++ Sbjct: 661 YKNDADWGYIATCANTLRESVSEWNESSRFADEPEMVPIPVYGNGDVYSWQDYYERIERT 720 Query: 226 HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHI 284 H+DG M+ R A P + + + + + ++R Y + S + Sbjct: 721 HVDGEMIARGALIKPWLFTEIKERRDW-DISSRERLDMMRKFAEYGLTHWGSDTHGVNTT 779 Query: 285 TRHML 289 R M Sbjct: 780 RRFMC 784 >UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BE39_9ACTO Length = 411 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 82/375 (21%), Positives = 121/375 (32%), Gaps = 86/375 (22%) Query: 18 MLDWTDRHCRYFLRLLS------------------------------------------- 34 M TD R R++ Sbjct: 1 MAGVTDVPFRRLCRIMGESGLPDHLRPVGIPSWAAESGEGATASSPKAPGESSNEPRHVT 60 Query: 35 ------RNTLLYTEMVTTGAIIHGKGDYLAY---SEEEHPVALQLGGSDPAALAQCAKLA 85 L TEMVT+ A++ L E +LQL G +PA +A+ A + Sbjct: 61 IPRVDAPAGLYVTEMVTSRALVEENERTLEMVRPDPAERVRSLQLYGVNPAVMAKAATML 120 Query: 86 EARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS---------IPV 135 R D I+LN GCP +V GA L L +D V A+ IPV Sbjct: 121 VERDLTDHIDLNFGCPVPKVTKKGGGAALPWKRDLFSDLVGAVVRACDEAGERAGREIPV 180 Query: 136 TVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPR 195 TVK RIGID + K +HAR + Sbjct: 181 TVKIRIGIDSEHETATDAALNAQ---KLGAAALTLHARTQ--------NQHYAGHAHWDE 229 Query: 196 VYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILAAVDREIFGS 253 + +LK D + + NG + +A A L+ DG+ VGR A P I + G Sbjct: 230 IARLK-DLLDIPVFGNGDVFEAADALAMLEQTGCDGISVGRGAQGRPWIFRDIVAAYHGG 288 Query: 254 SDTDADPVAVVRAMYPYIEREL-----SQGTYLGHITRHMLGLFQGIPGARQWRRYLS-- 306 S +A V ++ + L + +H+ +G R LS Sbjct: 289 SIPPGPSLAEVVSVIECHAAWCVVDQGDEERALREMRKHIGWYLRGFAVGGPQRHALSMV 348 Query: 307 ---ENAHKAGADINV 318 + H+ AD+++ Sbjct: 349 STLQELHERLADLDL 363 >UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP3_FIBSS Length = 392 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 75/342 (21%), Positives = 134/342 (39%), Gaps = 42/342 (12%) Query: 1 MPEKTDVHWSGR-----FSVAPMLDWTDRHCRYFLRLLSRN--TLLYTEMVTTGA---II 50 +P+K + + ++PM TD R R+LS + LL +E V T Sbjct: 7 LPKKVRFNLRNKEIFPNTILSPMDGVTDAPFRRLCRVLSGDRMGLLVSEFVPTDGDAVFN 66 Query: 51 HGKGDYLAYSEEEHPVALQLGGSDPAALAQCA-KLAEARGYDEINLNVGCPSDRVQNGMF 109 L + EE P +Q+ G P +A A K+AE + I +N GCP+ +V Sbjct: 67 PDGHKQLKFFPEERPFGVQIFGRFPDRMAAAAGKIAERYHPEFIEVNAGCPAPKVAGKGS 126 Query: 110 GACLMGNAQLVADCVKAMRDVVS-----IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGE 164 G+ L+ + + + + ++ V+ IP+T+K RIG DD DS + ++ Sbjct: 127 GSGLLRDLPRLQEILHDVKAVLDAKTPEIPLTLKCRIGWDD-DSINVMETL--KIAEGEG 183 Query: 165 CEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL 224 EM +H R + ++ + ++ + + NG + S+E A+ + Sbjct: 184 VEMLTVHGRT--------RLQGYNGLANWDWIGKVAAAA-KIPVIGNGDVNSVECARERI 234 Query: 225 Q--HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY----IERELSQG 278 + GV +GR A NP I + G + Y IE ++ Sbjct: 235 NTYGVSGVSIGRGAMHNPWIFGQIADAWEGREKHVITAQEALDVFPLYYKFKIEDGATEM 294 Query: 279 TYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLE 320 +G + + L +G L E GA+ + ++ Sbjct: 295 NAMGRMKQLAARLCKGF--------VLDEKYCHPGAEGDRIQ 328 >UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4RQU5_OSTLU Length = 608 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 113/294 (38%), Gaps = 21/294 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAY 59 EK + + + +AP+ + R + L + + EM +++ G + L Sbjct: 239 EKRTIDFKDKLYLAPLTTVGNLPFRRVCKTLGAD-ITCGEMALCTSLLQGLPSEWALLRR 297 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 + E +Q+ G P ++ +C +L E D I++N+GCP D V +G+ ++ + Sbjct: 298 HKSEDIFGVQICGGYPDSVTRCCQLLEDTIDVDFIDINMGCPIDSVCQKGYGSMMLEKPK 357 Query: 119 LVADCVKAMRDVVS-IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 + ++A + +T KTR+ D+ F V+ G M +H R Sbjct: 358 KMETVIRAASAALGKCSLTFKTRMAYTDKSRVAHT--FAPKVAEWGAAAM-TLHGRT--- 411 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGRE 235 + R D+ +L ++ + + NG + ++ HL+ +D M+ R Sbjct: 412 -----RAQRYRSVADWEY-TKLTKESSSVPLIGNGDVYMQKDYYTHLEEHSVDTCMLARG 465 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHML 289 A P + + + + ++++ + T TR L Sbjct: 466 ALIKPWLFTEIKERRDW-DISSRERFDILKSFASFGLEHWGSDTRGVESTRKYL 518 >UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propionibacterium acnes RepID=Q6A959_PROAC Length = 411 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 74/335 (22%), Positives = 122/335 (36%), Gaps = 29/335 (8%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLA 58 P V +APM T+ R L EM+T+ +++G LA Sbjct: 41 PSGGTVSVDTPVVLAPMAGVTNAAFRQLCAEQGA-GLYVCEMITSRGLVYGDHKTHGMLA 99 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 ++E E ++QL G DP + + + E G + ++LN GCP +V G L Sbjct: 100 FAECEDVRSVQLYGVDPGMVGEATSILCEKYGVNHVDLNFGCPVPKVTRKGGGGVLPWKL 159 Query: 118 QLVADCVKAMR---DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK 174 A V A D +PVTVKTRIGID + + +HAR Sbjct: 160 DRFAAVVSAAVQAGDAHGVPVTVKTRIGIDPEHITYID---SARAAVDSGAAAVCLHART 216 Query: 175 AWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMV 232 + + + +L + + + NG I +A A + GV V Sbjct: 217 VAEA--------YAGHSHWDAIGELVKTV-DVPVIGNGDIWEASDAMAMVGQTGCAGVEV 267 Query: 233 GREAYQNPGILAAVDREIFGSSDTDADPV----AVVRAMYPYIERELSQGTYLGHITRHM 288 GR P + + G T + A++R + + L + +HM Sbjct: 268 GRGCLGRPWLFRDLADAFAGRDTTTLPTLGEVCAMIRRHAELLVKYQGM-HGLVDMRKHM 326 Query: 289 LGLFQGIPGARQWRRYLSE--NAHKAGADINVLEH 321 +G P + R L + + + + + L+H Sbjct: 327 AWYLKGFPVGGETRHVLGQISSFDELDSLLATLDH 361 >UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 Tax=Ciona intestinalis RepID=UPI00006A5AE6 Length = 474 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 69/321 (21%), Positives = 129/321 (40%), Gaps = 38/321 (11%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPVALQL 70 VAPM+D ++ R R L YT M+ + + D LA E+ P+ +Q Sbjct: 22 LVAPMVDQSELAWRMLSRKYGAE-LCYTPMLHASVFLRDPQYRIDGLASCPEDRPLIVQF 80 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 +DP L + A LA+ D +++N+GCP + G +GA L N +LV +KA + Sbjct: 81 CANDPDILTKSALLAQDH-CDAVDINLGCPQTIAKRGNYGAFLGENWELVTKLIKACHEK 139 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 +S+PVT K RI D + + ++ + C++ +H R + G Sbjct: 140 LSVPVTCKIRIFTDVEKTVQYAKMI-----ERAGCQLLTVHGRTKEMKGP------MTGL 188 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAAVDR 248 + + +K D + + NG I+ + + DGVM+ +P + Sbjct: 189 ASWEHIKAVK-DAVKIPVFANGNIQYKADVDRCINQTGVDGVMIAEGNLHDPCLFVGKKT 247 Query: 249 EIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF-QGIPGARQWRRYLSE 307 I+ Y++ + + H+ + G+ + R L+ Sbjct: 248 IIW-------------EIALEYLQCAVKYPCPASYARGHVFKICHHGLQRHTRARDLLAS 294 Query: 308 NAHKAGADINVLEHALKLVAD 328 + DI ++ A++++ D Sbjct: 295 SK-----DIQDMKTAVEVLRD 310 >UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DS92_ZYGRO Length = 406 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 70/313 (22%), Positives = 121/313 (38%), Gaps = 26/313 (8%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYL----AYSEEEHPV 66 VAPM+D ++ R R TL YT M + D S+ + P+ Sbjct: 22 IVAPMVDQSELAWRILSRKYGA-TLAYTPMFHAKLFATSPKYRKDMWCEMDGDSKIDRPL 80 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q +DP L Q A+L + + D ++LN+GCP + G +G+ LM LV ++ Sbjct: 81 VVQFCANDPEYLLQAARLVQDK-CDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVHKLIRN 139 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + + + +PVT K RI + + S + TV G + +H R G + Sbjct: 140 LHENLDVPVTAKIRIFPEKEKS----LQYARTVLDAG-AQFLTVHGRLREQKG------Q 188 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSI-NGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGIL 243 + D+ + L+ + P T+ NG + + + D VM NPGI Sbjct: 189 QSGLADWETIKYLRDNLPPDTVFFSNGNLLYPNDISRCMDQINCDAVMSAEGNLYNPGIF 248 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG-IPGARQWR 302 A D + D + R + ++ + H+ + + +P R Sbjct: 249 NAEDSQDKEKVFPRVD--VICREYFEIVKSYEFSHASRTAMKSHLFKILRPFLPNHTDIR 306 Query: 303 RYLSENAHKAGAD 315 L+ K+ D Sbjct: 307 SSLALLNAKSSLD 319 >UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacteraceae RepID=D1AZV6_SULD5 Length = 312 Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats. Identities = 58/306 (18%), Positives = 119/306 (38%), Gaps = 25/306 (8%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQ 69 ++AP+ +TD R ++ + + ++EM++ A+ L S E P +Q Sbjct: 12 LALAPLAGFTDLPFRSVVKKFGAD-VTFSEMISANALRFKSEKTFKMLTKSPLEIPYIVQ 70 Query: 70 LGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 + GSD ++ + + G I+LN GCP ++ G+ L+ N + ++ ++ Sbjct: 71 IVGSDLTSIKEAVLILNDMEGIAGIDLNCGCPVPKMVAQEAGSSLLLNLDHMQRVIETIK 130 Query: 129 DVVSIPVT-VKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + T K R+G + + + + I + +H R + Sbjct: 131 TYSNKRYTSAKVRLGFNTK-----IPELIAKACENAGADFMSMHGRTRSGA--------Y 177 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAA 245 +DY + + R + + NG I SLE+A + +M+GR A NP I Sbjct: 178 KAEVDYQAIAE-ARAAVKIPVIANGDITSLEKALHVMSVTGCKNLMIGRGALGNPWIFYQ 236 Query: 246 VDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL 305 + + T + +V Y + + + +H+ +G A ++R + Sbjct: 237 LKNGLHHVEKTKI--LEIVLEHYDAMVEFYGEKG-VSIFRKHLHTYSKGFREASEFRDKI 293 Query: 306 SENAHK 311 + K Sbjct: 294 NRIEDK 299 >UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91_ARATH Length = 423 Score = 230 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 126/315 (40%), Gaps = 31/315 (9%) Query: 3 EKTDVHWS----GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGD 55 E+ HW ++ VAPM+D ++ R + YT M+ + + Sbjct: 76 ERAWAHWKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQA-AYTPMLHSRIFTETEKYRNQ 134 Query: 56 YLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMG 115 +E+ P+ +Q +DP L + AK E D +++N+GCP + G +GA LM Sbjct: 135 EFTTCKEDRPLFVQFCANDPDTLLEAAKRVEPY-CDYVDINLGCPQRIARRGNYGAFLMD 193 Query: 116 NAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 N LV V+ + +++PV+ K RI + +D+ + + G C + +H R Sbjct: 194 NLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDT----LKYAKMLEDAG-CSLLAVHGRTR 248 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVG 233 + + D+ + ++K + + NG ++ +E+ ++ +GV+ Sbjct: 249 DEK------DGKKFRADWSAIKEVKNAM-RIPVLANGNVRCIEDVDNCIKETGVEGVLSA 301 Query: 234 REAYQNPGILAAV-------DREIFGSSDTDADPVAVVRAMYPYIERE-LSQGTYLGHIT 285 +NP A D E G D D +V E+ + H+ Sbjct: 302 ETLLENPAAFAGFRTAEWAKDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVH 361 Query: 286 RHMLGLFQGIPGARQ 300 + + F+ P R+ Sbjct: 362 KMLGEWFRIHPQVRE 376 >UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Euteleostomi RepID=DUS1L_HUMAN Length = 473 Score = 230 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 114/311 (36%), Gaps = 35/311 (11%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-----KGDYLAYSEEEHPV 66 R VAPM+D ++ R R L YT M+ + + Y E+ P+ Sbjct: 18 RHVVAPMVDQSELAWRLLSRRHGA-QLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPL 76 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q +DP Q A LA+ D I+LN+GCP + G +GA L L+ + Sbjct: 77 IVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILL 135 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + +S+PVT K R+ + + + K C++ +H R G Sbjct: 136 AHEKLSVPVTCKIRVFPEIDKTVRYAQML-----EKAGCQLLTVHGRTKEQKGPL----- 185 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILA 244 + + +++ + + NG I+ L++ + L+ + GVM NP + Sbjct: 186 -SGAASWEHIKAVRKAVA-IPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFE 243 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ-WRR 303 ++ Y++ L ++ H+ L+ Q R Sbjct: 244 GRSPAVW-------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELRE 290 Query: 304 YLSENAHKAGA 314 L++ G Sbjct: 291 ELAKVKTLEGI 301 >UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SUV4_ENCCU Length = 341 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 69/290 (23%), Positives = 119/290 (41%), Gaps = 32/290 (11%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-----KGDYLAYSEEEH 64 F+VAPM+ ++ R + N + YTEMV + + G K + SE + Sbjct: 10 RPYFAVAPMVGNSEEAWRRLSKRHGAN-IFYTEMVHCDSFLRGSRNPVKNRWYTTSEGDR 68 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+ +Q+ G+ P + + A + + D I++N GCP + G +GA L N +L + V Sbjct: 69 PLVVQICGNSPEVMLEAALIIQDH-CDAIDVNFGCPQKVARKGGYGAYLQENWKLTGEIV 127 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 K + +++PV K R+ S E ++ + G C + +H R G + Sbjct: 128 KVLSSGLNVPVFCKIRVFG----SIEKTVEYAKMIEEAG-CSLLAVHGRTRDQRGAA--- 179 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGI 242 + + + +K + + + NG I + + L++ DGVMVG NP I Sbjct: 180 ---MGFASWKHIRAIKENL-RIPVLSNGNIMTHHDVWRCLEYTGCDGVMVGEAHLHNPLI 235 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 DR + ++ I E + HI HM L Sbjct: 236 FTGEDR----------SCLEIIGEYLD-ICMEFPGSADVRHIKSHMFRLL 274 >UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinomycetales RepID=B8HFM3_ARTCA Length = 392 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 72/308 (23%), Positives = 118/308 (38%), Gaps = 26/308 (8%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEEEHPVALQ 69 +APM T+ R R + EMVT+ A++ + L + ++E ++Q Sbjct: 28 VILAPMAGITNSAFRRLCREYGG-GMYVAEMVTSRALVERTPESLRIISHDDDEKVRSVQ 86 Query: 70 LGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK-AM 127 L G D + ++ D I+LN GCP +V G+ L L V+ A+ Sbjct: 87 LYGVDAGTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLFTAIVQTAV 146 Query: 128 RDVV--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 R+ +IP+T+K R GIDD ++ +H R A Sbjct: 147 REASKGNIPLTIKMRKGIDDDHLTYLD---AGRIARDSGVAAVALHGRTA--------AQ 195 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGIL 243 D+ + +L+ P + + NG I S E+A ++ DGV+VGR P + Sbjct: 196 FYSGQADWSAIARLREALPDIPVLGNGDIWSAEDAVRMVRETGVDGVVVGRGCQGRPWLF 255 Query: 244 AAVDREIFGSSDTDAD-----PVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 + GS V R +E +G L I +H+ F+G Sbjct: 256 GDLQAAFEGSDVRHRPNLRQVAEGVYRHAELMVETFGDEGKALREIRKHIAWYFKGYVVG 315 Query: 299 RQWRRYLS 306 + R L+ Sbjct: 316 GELRTRLA 323 >UniRef50_A8PTG4 tRNA-dihydrouridine synthase 3 n=1 Tax=Malassezia globosa CBS 7966 RepID=DUS3_MALGO Length = 766 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 58/305 (19%), Positives = 113/305 (37%), Gaps = 20/305 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS-- 60 EK + W G +AP+ + R + + EM + + G + Sbjct: 387 EKRRLQWKGDLYLAPLTTTGNLPFRRLCASFGSD-IHCGEMGMAESFLQGHASEWSLVRR 445 Query: 61 -EEEHPVALQLGGSDPAALAQCAKLAEAR---GYDEINLNVGCPSDRVQNGMFGACLMGN 116 E E Q+ G+ P L A++ G D +++N GCP D V N G+ L+ + Sbjct: 446 WEGERIFGTQVCGAKPELLVPTAEVLAREVGRGLDFVDVNCGCPIDLVYNKGAGSALLDH 505 Query: 117 AQLVADCVKAMRDVVS-IPVTVKTRIGIDDQDSYEFLCDFINT--------VSGKGECEM 167 A + V+ M + + IP+T+K R G + + + T + G+ + Sbjct: 506 ANKLGRIVRGMSEALGEIPLTIKLRTGTTSKPTTHKIFARAQTEWGVGGLSLHGRSRKQR 565 Query: 168 FIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ-- 225 + A A++ + + + + + D + + NG + + HL+ Sbjct: 566 YKNDADWAYIRTCVDTLHDAVRTWNEEPQHADEPDMVPVPVYGNGDVYGWRDYYDHLEHA 625 Query: 226 HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHI 284 H+DG M+ R A P I + + + + ++R Y + S + Sbjct: 626 HVDGTMIARGALIKPWIFTEIKERRDW-DISSRERLDMIRQYASYGLTHWGSDTQGVNTT 684 Query: 285 TRHML 289 R + Sbjct: 685 RRFLC 689 >UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota RepID=Q7PVV7_ANOGA Length = 599 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 126/336 (37%), Gaps = 32/336 (9%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---Y 59 E+ + + + ++P+ + R + + + EM II+G A Sbjct: 242 ERKRIVFRDKLYLSPLTTVGNLPFRRICKEYGVD-ITCGEMACAIPIINGAIQEWALTKR 300 Query: 60 SEEEHPVALQLGGSDPAALAQCAKL-AEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +QL G +P + A++ AE D I+LN GCP D + N G+ L+ Sbjct: 301 HSSEDLFGVQLCGHNPKLVTYAAQIIAEKADVDFIDLNTGCPIDLIFNQGGGSALLRRQN 360 Query: 119 LVADCVKAMRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 ++ V++ ++ TVKTRIGI + + + G + IH R Sbjct: 361 VLKVMVQSCSRLLADYGKEFTVKTRIGIYNNKLIA--HEMVPKFEDWG-ASLITIHGRT- 416 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEE---AKAHLQHMDGVMV 232 KE R D+ + Q + + NG I E+ + ++ GVMV Sbjct: 417 -------KEQRYTKRADWEYLQQCATQAQSVPVFGNGDIFGYEDYEHIRTKCPNIAGVMV 469 Query: 233 GREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHML--- 289 GR A P + + + + +++ Y T TR L Sbjct: 470 GRGALIKPWVFQEIKERKTLDPSSG-ERFEMLKRYVNYGLEHWGSDTKGVETTRRFLLEW 528 Query: 290 --GLFQGIPGARQWR--RYLSE--NAHKAGADINVL 319 L++ +P R + ++E +A++ D+ L Sbjct: 529 QSFLYRYVPYGLLERPPQRINERPDAYRGRDDLETL 564 >UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasidiella neoformans RepID=DUS3_CRYNE Length = 725 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 108/308 (35%), Gaps = 33/308 (10%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---Y 59 EK ++W G +AP+ + R T+ +EM +++G + A Sbjct: 350 EKRRLNWEGGRYLAPLTTVGNLPFRRLCVDYGA-TITVSEMALAQPLVYGAKEEWALVRR 408 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-----GYDEINLNVGCPSDRVQNGMFGACLM 114 E E +Q+ G P + A++ G D +++N+GCP D V N G+ LM Sbjct: 409 HESEKMFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDLVFNQGAGSALM 468 Query: 115 GNAQLVADCVKAMRDVV-SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR 173 + + + M + IP+TVK R G+ I + IH R Sbjct: 469 DSPGRLGKLLVGMNRALGDIPLTVKFRTGVAHGKPNA--HKLIPRFVTEWGAGALTIHGR 526 Query: 174 KAWLSGLSPKENREIPPLDYPRVYQLK---------RDFPHLTMSINGGIKSLEEAKAHL 224 ++ R P D+ + + P + + NG S + Sbjct: 527 --------SRQQRYSKPADWEYIKTCVTALRESVADANLPPVPIFGNGDCFSAASYYEEM 578 Query: 225 Q--HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYL 281 +DGVMV R A P I + E + + + ++ + + S + Sbjct: 579 DRSGVDGVMVARGALIKPWIFTEIK-ERREWDISAVERLEGIKKFAEFGLSHWGSDTQGV 637 Query: 282 GHITRHML 289 R + Sbjct: 638 NTTRRFLC 645 >UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VA23_NOSCE Length = 327 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 134/333 (40%), Gaps = 34/333 (10%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-----GDYLAY 59 ++ + +APM+ ++ R R + + YTEMV I K + Sbjct: 5 KNLKKPYKV-LAPMVGNSELAWRILARRYGAD-ICYTEMVNCDTFIRSKINPLSNRWYTT 62 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 ++ + P+ +Q+ G+D + + + + + D I++N+GCP + + G +G+ LM + Sbjct: 63 NKIDRPLIIQICGNDVNKMLKVSLILQEY-CDAIDINLGCPQEIARKGNYGSFLMDDLLK 121 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 V + V + + + +PVT K RI +S E ++ + G C+M +H R G Sbjct: 122 VKEIVTVLSNNLKVPVTCKIRIF----ESIEKSVEYAKMIEQAG-CKMLTVHGRTRDQRG 176 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAY 237 L + + +K ++ + NG I + + +++ DGVMV Sbjct: 177 L------NTGLASWDHIRAIKASL-NIPVISNGNIINNSDIDNCVEYTKCDGVMVAETHL 229 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG-IP 296 NP I + R S T+ + + ++ + I H L + + Sbjct: 230 YNPLIF--IKRH----SKTNIS---IYKEYLNIFLENYNEYD-IHTIKSHTFKLLKKFLK 279 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVADK 329 ++ +++ IN+ + + DK Sbjct: 280 QYPEFSEHIN-LCKTLKDYINLCDVLETFIKDK 311 >UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SC53_LEPBA Length = 316 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 76/323 (23%), Positives = 132/323 (40%), Gaps = 41/323 (12%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE--------- 62 R +APM D R L + +E + + + + E Sbjct: 2 RIILAPMEGLLDFRLREILTQIGGYDECVSEFIRVNDTLLPPHRFFRTAPELKNSSRTKS 61 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 + PV +Q+ GSDP +A A L + G I++N GCP+ V GA L+ L+ Sbjct: 62 DTPVKIQILGSDPNRMADNAHLVASLGAYGIDINFGCPAPTVNRNRGGAALLKEPNLMYS 121 Query: 123 CVKAMRDVV--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 VKA+R+VV +IPVT K R+ +S E D + G + ++HAR Sbjct: 122 IVKAVRNVVPENIPVTAKMRL---GYESTELALDCAKALEE-GGAKEIVVHART------ 171 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQ 238 K + PP + + ++K + + NG I ++++A + D +M+GR A Sbjct: 172 --KTDGYKPPAYWEWIAKIK-SILKINVIANGEIWTVQDAIQCQKISGCDDIMIGRGAVT 228 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 NP I + +++ V+ + + +E ++ + +G I Sbjct: 229 NPSIALLIKKKLEERMSWQKTK-EVLSSYWLSMEPDVEAVSRVGRI-------------- 273 Query: 299 RQWRRYLSENAHKAGADINVLEH 321 +QW YLS +A D ++ Sbjct: 274 KQWLHYLSREYEEAQIDFQKIKR 296 >UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPY9_9BACT Length = 330 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 64/325 (19%), Positives = 129/325 (39%), Gaps = 24/325 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMV--TTGAIIHGKGDYLAYSEEEHPV 66 + + S+APM T R+ + LL TE + ++ + P+ Sbjct: 5 FPFKLSLAPMEGVTHPLMRHQIAQHGGLDLLCTEFIRISSHKPSMRSLKKQIVKSGDIPL 64 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 ++Q+ G++ +A+ AKL G D +++N+GCP+ R G G+ ++ + +L + + Sbjct: 65 SVQIMGNNAELMAESAKLVVDCGADAVDVNMGCPTKRAVKGGVGSAMLKDPKLCYQVLAS 124 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 MR+ V ++ K R G D+++ + I + +H R+ + + Sbjct: 125 MREQVPCALSAKIRAGFDNKEGVFEILQAI----VDSGADYLAVHPRR--------RVDH 172 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILA 244 D+ + LK P + + NG +++ +A + DGVM+GR A NP I Sbjct: 173 YEGHSDWRIISALKEKSP-IPVIGNGDVRTAADAVRMFKETQCDGVMIGRGALSNPWIFL 231 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELS-----QGTYLGHITRHMLGLFQGIPGAR 299 + + + + Y I + S + L ++ +P Sbjct: 232 QTSQVLSDQEVFIPNWEDIY-HFYHGIAQAFSDFCDNEQGTLNKTKEMLMYFSVNLPEPA 290 Query: 300 QWRRYLSENAHKAGADINVLEHALK 324 +R+ + + +N L LK Sbjct: 291 PFRKAIGRS-QSIDEMMNKLHSFLK 314 >UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G230_PHATR Length = 545 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 56/309 (18%), Positives = 122/309 (39%), Gaps = 30/309 (9%) Query: 1 MPEKTD--VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA 58 +P++T + +S + VAP+ + R ++ + + EM ++ G+ A Sbjct: 175 LPDRTRKLIDFSKKVYVAPLTTVGNLPFRRIMKKFGAD-ITCGEMAVATNLLSGQSSEWA 233 Query: 59 ---YSEEEHPVALQLGGSDPAALAQCAKLAE-ARGYDEINLNVGCPSDRVQNGMFGACLM 114 EE +Q+ P A+ +L E D ++LN+GCP D V N GA LM Sbjct: 234 LLKRHPEEDIFGVQIAAGYPDVFARTCELIENEMNVDFVDLNLGCPLDIVCNKGSGAALM 293 Query: 115 GNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKG--ECEMFIIHA 172 + + V+ + + ++ P+++K R G + + F + + + G +IH Sbjct: 294 MRDKRLRSSVEGILETLTCPISIKMRTGW--EMTKPFAHNLVQKIQSWGLDGISAVMIHG 351 Query: 173 RKAWLSGLSPKENREIPPLDYPRVYQLKR----DFPHLTMSINGGIKSLEEAKAHLQHMD 228 R + R D+ + + + + + NG I S ++ + + + Sbjct: 352 R--------SRLQRYAKEADWDYISMVAKSQDMSLTTIPVIGNGDIFSYQDFEEKIAR-E 402 Query: 229 GV----MVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGH 283 GV M+ R A P + + + ++ + +++ + +E + + + Sbjct: 403 GVNSCAMLARGALIKPWLPTEIKERRHW-DISASERLDILKDFARFGMEHWGTDQQGINN 461 Query: 284 ITRHMLGLF 292 R +L Sbjct: 462 CRRFLLEWL 470 >UniRef50_O83945 Probable tRNA-dihydrouridine synthase n=4 Tax=Treponema RepID=DUS_TREPA Length = 340 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 130/333 (39%), Gaps = 30/333 (9%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEE 63 + G AP+ ++D R + YTEMV++ A++ + + E Sbjct: 15 LSLKGNVFFAPVAGYSDSAFRSIAIEWEA-SFTYTEMVSSEAMVRDSLNTKRLIRRASNE 73 Query: 64 HPVALQLGGSDPAALAQCAK-LAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 A+Q+ GS+PA +A+ AK + ++ I++N GCP ++ GA L + + Sbjct: 74 THYAIQIFGSNPAVMAETAKLIVDSAQPSCIDINAGCPMPKITKTGAGAALTREPTRLYE 133 Query: 123 CVKAMRDVV-----SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 VKA+ D V IPVTVK R G + + + +H R Sbjct: 134 VVKAVADAVYAQDARIPVTVKIRAGW---EEAHLTWKEAARAAVDAGAQALALHPRTC-- 188 Query: 178 SGLSPKENREIPPLDYPRVY---QLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMV 232 ++ + Q R + + + +G + + E+A+A L+H GVM Sbjct: 189 ------AQCYAGEANWDIIADLVQCARGWGEVPVFGSGDLHAPEDARAMLEHTACAGVMF 242 Query: 233 GREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYP---YIERELSQGTYLGHITRHML 289 R A NP I + + T +RA + + +++ + + + + + Sbjct: 243 ARGAMGNPFIFRQTRQLLTEGYYTPVTFEQKLRAAWRELHLLAQDVGESSACKQMRKRFV 302 Query: 290 GLFQGIPGARQWRRYLSENAHKAGADINVLEHA 322 +G G QW + + +A V+ A Sbjct: 303 SYAKGERGKTQWCQR-AVHASSFADFAAVIRDA 334 >UniRef50_Q6AKJ6 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AKJ6_DESPS Length = 354 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 27/326 (8%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPV 66 + S+APM+ + R + L L YTEM+ + H YL + E P+ Sbjct: 41 APPLSLAPMVGLSHSALRSLIADLGGCGLFYTEMLAARRLPHENPAVSSYLHTTPCERPL 100 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 QL +D +A G D +++N+GCP+ V+ G GA L + V D V + Sbjct: 101 IYQLFIADVKYVAPALDKIHRLGGDGVDINLGCPAPSVRRGGAGAALAEDWDRVRDIVSS 160 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 R + ++ K R+G ++++ L DF + +G ++ +HAR + Sbjct: 161 ARRHTDLTLSAKIRVGHVGKEAH--LLDFCKMLEAEG-VDLLAVHARYHGEKFCRKPRWQ 217 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILA 244 + P+ + + + NGGI S+++A+ L+ G+M+GR A + P + Sbjct: 218 LLAPI---------CEQLDIPIFANGGIFSVDDARRCLELSGAAGLMLGRGAVERPWLFN 268 Query: 245 AVDREIFGSSDTDAD--PVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 + RE++G A+ PV + + + LG I + + Q+ Sbjct: 269 EIAREVYGLDLPVAESRPVEIYFRFVQKMVEIFAPERQLGRIKEFTHYIAKN----HQFG 324 Query: 303 RYLSENAHKAGADINVLEHALKLVAD 328 +L+ K+ + +E A++ D Sbjct: 325 HHLASAVQKS----HTVEEAVQAAED 346 >UniRef50_B7XJM7 tRNA-dihydrouridine synthase 1 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XJM7_ENTBH Length = 309 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 58/318 (18%), Positives = 130/318 (40%), Gaps = 32/318 (10%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-----YLAYSEEEHPVALQLGG 72 M+ +++ R +R + + + YTEMV K D + ++ + P+ +Q+ G Sbjct: 1 MVSFSEEAFRILVRRYAVD-VCYTEMVNCKVFNQNKADPRKNRWYTTNDNDRPLVIQICG 59 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 +DP+ + + D I++N+GCP + + G +G+ LM + + V + + + + ++ Sbjct: 60 NDPSEMLATCLQIQQY-CDAIDINLGCPQNIAKKGNYGSYLMDDFEKVKNIISTLAEQLT 118 Query: 133 IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLD 192 +P+ K R+ +S E + + G C + +H R G + + Sbjct: 119 VPIFCKIRVF----ESIEKTITYAKMIEKSG-CSLLAVHGRTREQKG------QNTGYVS 167 Query: 193 YPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAVDREI 250 + + +K + + NGG+ + + K ++ DG+M+G P I +++ Sbjct: 168 FDHIRAVKNALS-IPVVSNGGVLTHRDIKNAVEITGCDGIMIGEPILFIPSIFVDIEK-- 224 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAH 310 + + + + + T HI H + + + + + Sbjct: 225 --------PCINIFKEYLTIVNNNIHSATN-KHIKGHAFKILKPLLNHNPKLQADIDRCR 275 Query: 311 KAGADINVLEHALKLVAD 328 IN ++HALK +D Sbjct: 276 TIDDYINFIDHALKSNSD 293 >UniRef50_O95620 tRNA-dihydrouridine synthase 4-like n=40 Tax=Metazoa RepID=DUS4L_HUMAN Length = 317 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 69/308 (22%), Positives = 131/308 (42%), Gaps = 38/308 (12%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPVALQLGG 72 APM+ ++ R +R S + L YT M+ + + ++ + P+ +Q Sbjct: 32 APMVRYSKLAFRTLVRKYSCD-LCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAA 90 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 +D L+ A++ + I++N GCP +GACL+ +LV D VK +R+ V Sbjct: 91 NDARLLSDAARIVCPY-ANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149 Query: 133 IP---VTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 P V++K RI D + + + + +H R A Sbjct: 150 TPGFSVSIKIRIHDDLKRTVDLCQK-----AEATGVSWITVHGRTAEER---------HQ 195 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA--HLQHMDGVMVGREAYQNPGILAAVD 247 P+ Y + +K + + + NG I+SL+EA+ + DGVMV R NP + A Sbjct: 196 PVHYDSIKIIKENMS-IPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFA--- 251 Query: 248 REIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 G +T ++ ++ +++ L GT +H++ + + I ++ R + + Sbjct: 252 ----GYEETP------LKCIWDWVDIALELGTPYMCFHQHLMYMMEKITSRQEKRVFNAL 301 Query: 308 NAHKAGAD 315 ++ A D Sbjct: 302 SSTSAIID 309 >UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogaceae RepID=A7HK00_FERNB Length = 322 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 70/304 (23%), Positives = 128/304 (42%), Gaps = 33/304 (10%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHP 65 G +APM TD R +TEM++ ++I Y +E+ Sbjct: 7 LPGNIGLAPMAGVTDYPFRKLCLQHGAY-FAFTEMISAKSVIINVKINEIYFPRQDEKDR 65 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 V +QL GSD A L++ A + + +G ++LN GCP +V G+ L+ + V+ Sbjct: 66 VGVQLFGSDYAELSEAAAIVQEKGL-WVDLNAGCPVSKVIKKGAGSALLKDLGEFRKVVR 124 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 AMR V+ TVKTRIG ++D +E + + + + +H R A S K Sbjct: 125 AMRSVL-KRFTVKTRIGW-EKDEFEKIYNILLE----ENVDAVFVHGRTA-KQMYSGKAT 177 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGIL 243 +I + + + I+G I + E+ K ++ GV+V R + NP I Sbjct: 178 WKIYNPGF------------VPLYISGDIYTKEDIKNAMEQSGATGVIVARGSIGNPWIF 225 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 + + G + + +++ + + G + + + G + + GAR +R Sbjct: 226 SEI-----GEPNCEQRLCTILKHLEYLYDEYKDYGAVV--FRKFVAGYTKNMLGARDFRD 278 Query: 304 YLSE 307 + + Sbjct: 279 KVMK 282 >UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C170_DESAD Length = 323 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 125/336 (37%), Gaps = 32/336 (9%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYL 57 +P D W +AP+ ++D R R + TEMV+ + + G L Sbjct: 4 LPISPDKPW-----LAPLAGYSDLPFRMLCRKRGC-AVACTEMVSVKGLKYDGKGTKALL 57 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 A E++P+ +QL G +P + GY +LN GCP +V G+ L + Sbjct: 58 ATCPEDNPLVVQLFGGEPQDYSDTMPQLIDEGYSFFDLNSGCPVKKVLKTGGGSALHLDP 117 Query: 118 QLVADCVKAMRDVVSI-PVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 + + AM V V VK R+G + + + + + G +H R A Sbjct: 118 DRLVETASAMVRVAGEGKVGVKIRLGFMNGE--DNFLEIAKRLEDTG-VAWLTMHPRYA- 173 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGR 234 + D+ ++ LK++ + + +G + + E+ ++ DG+M R Sbjct: 174 -------KQMFSGQADWSKLAVLKQNVS-IPVIGSGDLFTAEDGMECIKQTGIDGIMFAR 225 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIEREL---SQGTYLGHITRHMLGL 291 A +P I A + + P + + M +I I + Sbjct: 226 GALFDPEIFARYLKLLDDPKCATLPPFDLGKTMEEHINMTRDFDGSNRSFRKIRSILPRY 285 Query: 292 FQGIPGARQWRRYLSENAHKAGADINVLEHALKLVA 327 +G+ G R R L+ A D L A + V+ Sbjct: 286 AKGMDGIRSIRTKLT-----ACEDWEELLEAAREVS 316 >UniRef50_B8C4H3 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C4H3_THAPS Length = 333 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 63/293 (21%), Positives = 112/293 (38%), Gaps = 27/293 (9%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLA---YSEEEHPVALQ 69 APM+D +D R R + +L +T M+ I + + ++ P+ Q Sbjct: 1 APMVDASDLPYRLLTRRYNT-SLCFTPMIHAKMFIDKPKYREKFWKIEGMPSQDRPLIAQ 59 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLM--GNAQLVADCVKAM 127 G D L Q K+ E D +++N GCP + + G +GA LM N + + V+ + Sbjct: 60 FCGHDKNVLLQAMKVLEPH-VDGVDINCGCPQNIAKRGRYGAFLMEEDNGDKIVEIVQHL 118 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 +++PV+VK RI E + G M IH R + + + Sbjct: 119 TANLNVPVSVKLRILPTG---IEDSLALYKRLVDAG-AAMLTIHGRTRF------QNKVD 168 Query: 188 IPPLDYPRVYQLKRDF-PHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILA 244 ++ + Q+ + + NG I +L+E + + +DGVM + P + Sbjct: 169 TGTANWDYIRQVVDLVGDRVPVIANGNICNLDEVRKCFEVTGVDGVMSSEGILEYPPLFT 228 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIE----RELSQGTYLGHITRHMLGLFQ 293 + E G T + + + E QG+ L I H+ Sbjct: 229 ETNVESTGFKRTGPGRLQMAEDYLELCKEYPSEEGGQGSGLKCIRAHLHRFLH 281 >UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibrionales RepID=C7LQM9_DESBD Length = 324 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 110/314 (35%), Gaps = 29/314 (9%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLA 58 P D W +AP+ ++D R + TEMV+ +I+ G + L Sbjct: 7 PITADKPW-----LAPLAGFSDLPFRLLCHEYGCHA-AVTEMVSAKGLIYDSPGTNELLQ 60 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 +++ P+ +QL GS+ L Q + G+ +LN GCP +V GA L+ + Sbjct: 61 TCDQDSPLVVQLFGSEEPFLVQSIERLRKAGFRYFDLNCGCPVRKVIKTGSGAALLKEPE 120 Query: 119 LVADCVKAMRDVVSIPVTV--KTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 + K+M D P + K R+G G G +H R Sbjct: 121 NLLKIAKSMIDAAE-PGCMGFKIRLGWYVGQPVYLQVATKLEELGAGWV---TMHPRFG- 175 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGR 234 D+ + LK L + +G + E+A ++ D +M R Sbjct: 176 -------AQGFTGHADWSHLKTLKERV-TLPVIASGDLFHAEDAIKCIEQTSVDSIMFAR 227 Query: 235 EAYQNPGILAAVDREIFGSSDTDADP---VAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 A +P I + +VR + + L + + Sbjct: 228 GALNDPSIFTRYLQLRRHEEPPAKSWQQMEDMVRRLSELYPQHGMDRLGLLKMRTLVPRF 287 Query: 292 FQGIPGARQWRRYL 305 +G+PGAR RR + Sbjct: 288 LKGLPGARALRRDI 301 >UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseriaceae RepID=DUSC_NEIMA Length = 333 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 72/288 (25%), Positives = 120/288 (41%), Gaps = 26/288 (9%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE 62 + T+ R +APM D R L + +E V +H + +L Y E Sbjct: 5 QTTEPKQKTRIILAPMQGLVDDVMRDLLTRIGGYDECVSEFVRITHTVHSRATWLKYVPE 64 Query: 63 ---------EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACL 113 P +QL GSD +A A A G D+I+LN GCP+ V GA L Sbjct: 65 IANGNKTFSGTPCTVQLLGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGAIL 124 Query: 114 MGNAQLVADCVKAMRDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIH 171 + +L+ VK +R+ + IP+T K R+G +D+ + ++ G C +H Sbjct: 125 LKEPELIFHIVKTLRERLPAHIPLTAKMRLGYEDKSP---ALECACAIAEGGACG-LTVH 180 Query: 172 ARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA--KAHLQHMDG 229 AR K PP + + ++ RD + ++ NG + SL++ + + Sbjct: 181 ART--------KAEGYEPPAHWEWIRKI-RDSVDIPVTANGDVFSLQDYIGIKTISGCNS 231 Query: 230 VMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQ 277 VM+GR A P + + + G D D V + + + E L++ Sbjct: 232 VMLGRGAVIRPDLARQIKQYENGGPVKDTDFAEVSKWIRQFFELCLTK 279 >UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=Rhodobacterales RepID=A3VWV8_9RHOB Length = 339 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 125/318 (39%), Gaps = 26/318 (8%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS 60 M + D + +APM TD R + L+ +EMV + ++ K + Sbjct: 1 MLKIADRQIATPVFLAPMAGITDLPFRTVVAGFGA-GLVVSEMVASQEMVQAKPSARGKA 59 Query: 61 EEE---HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ----NGMFGACL 113 E ++QL G DP +A+ A++ G I++N+GCP+ +V G G+ L Sbjct: 60 ELGFGIENTSVQLAGCDPHWMAEAARVVADHGARIIDINMGCPAKKVVSAAGAGASGSAL 119 Query: 114 MGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR 173 M + ++A+ V +PVT+KTR+G D+ S + G M +H R Sbjct: 120 MRDLDHALRLIEAVVGAVDVPVTLKTRLGWDEGCSNA--AELAKRAEAAG-VAMITVHGR 176 Query: 174 KAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVM 231 + D+ + + + ++ + NG I + A + + GVM Sbjct: 177 T--------RCQFYRGAADWAMISDIAQAV-NIPVIANGDIVGVASACRAMAQSNAAGVM 227 Query: 232 VGREAYQNPGILAAVDREIFGSSDTDADPVAVVRA----MYPYIERELSQGTYLGHITRH 287 +GR A P +LA V + + + AV+ Y + + L +H Sbjct: 228 IGRGARGRPWLLAEVAAAMGHGTAPEVPRGAVLADLVAGHYEAMLGFYGRDLGLRVARKH 287 Query: 288 MLGLFQGIPGARQWRRYL 305 + + + RR + Sbjct: 288 LGWYMEAAGSDPEMRRAV 305 >UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGV0_PLALI Length = 322 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 72/317 (22%), Positives = 132/317 (41%), Gaps = 22/317 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEE 62 ++ + ++APM + T R + +L+ +E + + L+ + Sbjct: 5 NISLAHGLTLAPMEEHTSLPFRLICKQQGA-SLVCSERIDAKDVAERDKRAIKLLSTTSA 63 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 E P Q+ G+D A + + A++ E G+ ++LN CP R+ G LMG Q +A+ Sbjct: 64 ERPAVGQISGNDAAQIGEAARVIEELGFSMVDLNFECPIRRLVGRGEGGALMGQPQRIAE 123 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 V A + VSIPVTVK R G + + V G I+HAR Sbjct: 124 LVAAAKQAVSIPVTVKLRTGPKAGEDTA--VETAQRVEQAGGAA-IILHARSV------- 173 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNP 240 E + D+ V ++K + + +GG+++ ++A + L+ DGV +GR NP Sbjct: 174 -EQAYLGGPDWQHVTRVKEAVS-IPVLGSGGVRTPQDAISFLESSGADGVAIGRGCLGNP 231 Query: 241 GILAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 I +FGS + A+ V+ A+ + S + R + +P Sbjct: 232 WIFQQARTLLFGSREIIEPSPAERGKVLLALVEHEFEFYSAHLAQKRLARTACYFAKFLP 291 Query: 297 GARQWRRYLSENAHKAG 313 ++++ + + A Sbjct: 292 DFAEFKKEIHAIKNLAQ 308 >UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6M9N8_PARUW Length = 297 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 68/287 (23%), Positives = 116/287 (40%), Gaps = 24/287 (8%) Query: 43 MVTTGAIIHGKGDY---LAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGC 99 MV A+I L Y+ HP+ QL GS P+ Q AK+ E G+D ++LN GC Sbjct: 1 MVKMDALIRHDPHTYHILDYAANMHPIGGQLCGSKPSIAGQAAKIIEELGFDIVDLNCGC 60 Query: 100 PSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTV 159 P D++ G+ L+ +L+ + V M V IPVTVK R G D+Q + + I + Sbjct: 61 PVDKITKDGSGSGLLKTPELIGEIVCNMVSAVKIPVTVKIRAGWDEQ---QIQVENIVQI 117 Query: 160 SGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEE 219 + + IH R ++ P ++ + + K + + NG + Sbjct: 118 VEQAGAQAICIHGRT--------RQQGYRGPANWEYIKRGKLAAKSIKIIGNGDVLDGPS 169 Query: 220 AKAHL--QHMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIEREL-- 275 A D V+V R P I+ + R + G + +A+Y + L Sbjct: 170 AAKMFCETGCDAVLVARGTLGQPWIVQDILRYLEGKTAICHSLEDCRQALYQHFLETLHY 229 Query: 276 -SQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEH 321 + R + G R +R +S+ +D+ V+++ Sbjct: 230 HPDQRVCIDMRRVGCWYLKKSSGTRLFRELISK-----ASDVEVIKN 271 >UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=Alphaproteobacteria RepID=DUS_RHOCA Length = 324 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 75/293 (25%), Positives = 119/293 (40%), Gaps = 23/293 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH---- 64 +APM TD R + L+ +EMV +G ++ K A ++ E Sbjct: 10 LDPPVLLAPMAGITDLPFRRMVARFGA-GLVVSEMVASGEMLTAKPSVRAKAQAELTAGL 68 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P ++QL G + A +A+ AK+ G + I++N+GCP+ +V G+ GA LM N + Sbjct: 69 PTSVQLAGREAAPMAEAAKIVADMGAEIIDINMGCPAKKVTGGLSGAALMRNPDHALRLI 128 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +A+ V +PVT+K R+G D+ + I + +M +IH R Sbjct: 129 EAVVGAVDLPVTLKMRLGWDED---QLNAAEIAARAEAAGVKMIVIHGRTRM-------- 177 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGI 242 D+ R R + + NG I A+ L GVMVGR A P Sbjct: 178 QFYTGAADW-RAIAAVRAAVSVPVVANGDITDAASARRALDQSGAAGVMVGRGAQGAPWR 236 Query: 243 LAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 LA + +FG +D + V Y I + L +H+ Sbjct: 237 LAQIAAALFGKADPKLPSGSEFSDFVSEHYEAILSFYGRDLGLRIARKHLGWY 289 >UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga lettingae TMO RepID=A8F480_THELT Length = 305 Score = 220 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 121/311 (38%), Gaps = 27/311 (8%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHP-VALQLGGSDPA 76 M T+R R +TEM++ +++ ++ P VA+QL G+DP Sbjct: 1 MAGITNRAFRKICTFWGA-QFSFTEMISAESVVRNFKTVQRMLPKDEPNVAVQLFGNDPK 59 Query: 77 ALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVT 136 LAQ AK+ E I++N CP +V G L+ + + + + +++ V PVT Sbjct: 60 TLAQAAKIVEPY-AAWIDINAACPVKKVIKKNSGGALLNDLERLEKIIGSVKSSVQKPVT 118 Query: 137 VKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRV 196 VK RIG + + D I K + +H R + + Sbjct: 119 VKIRIGFEKN-----ILDQIVHSCIKAGADGIEVHGRTV--------VQKYSGKAFWD-- 163 Query: 197 YQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAVDREIFGSS 254 LK ++ +++G I E+ L+ + ++ R A + P I A + ++ + Sbjct: 164 --LKLSQYGISTAVSGDIFEAEDFHKALEMSGANSALIARGALRKPWIFAQITQKR--TP 219 Query: 255 DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGA 314 + + IE E + Y + + + G G+ GAR++R + +K Sbjct: 220 KITEIKETFTKHLKMQIEDEGERSIY--KMRQFVAGYTHGMRGAREFREKFMKL-NKPED 276 Query: 315 DINVLEHALKL 325 +E Sbjct: 277 MEKAIEEFFNS 287 >UniRef50_D2VPF2 Predicted protein n=2 Tax=Naegleria gruberi RepID=D2VPF2_NAEGR Length = 450 Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 65/287 (22%), Positives = 118/287 (41%), Gaps = 31/287 (10%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEE-EHP 65 S ++ VAPM+D ++ R + TL YT M + K + ++ + E P Sbjct: 102 SPKYVVAPMVDQSEMAFRLLSKEYGA-TLAYTPMFHGMYFAYHKKYRARFYQFNPDLEGP 160 Query: 66 VALQLGGSDPAALAQCAKLA---EARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 V Q +DP QC K + I+LN+GCP + G +G+ LM + Q V Sbjct: 161 VFAQFCTNDPETFVQCGKRVWDLSKQKISAIDLNLGCPQRIARRGRYGSFLMEDLQTVHS 220 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 + + +PVT K RI D E +++ TV G ++ +H R G + Sbjct: 221 IINKAHLELPMPVTAKIRIFED----LELTMNYVKTVVDAG-AQVLCVHGRTREQKGANQ 275 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNP 240 D+ + ++ FP + M NG I++ ++ + L++ D VM G +NP Sbjct: 276 NY------ADWTVIRAIREQFPQIPMIANGNIRTFQDVQDCLEYTRVDAVMSGEGLLENP 329 Query: 241 GILA--------AVDREIFGSSDTDADPVA--VVRAMYPYIERELSQ 277 + + + T P + R ++ +++ + + Sbjct: 330 ALFNGGQFVHPLDISDKYVNICKTHFPPDHNNIKRHLFRILDKYIPE 376 >UniRef50_Q9HGN6 tRNA-dihydrouridine synthase 1 n=1 Tax=Schizosaccharomyces pombe RepID=DUS1_SCHPO Length = 399 Score = 219 bits (559), Expect = 9e-56, Method: Composition-based stats. Identities = 66/317 (20%), Positives = 120/317 (37%), Gaps = 27/317 (8%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI-----IHGKGDYLAYSEEEH 64 + +APM+D ++ R R + L Y+ M + K EE Sbjct: 17 RPKRILAPMVDQSELPWRILARRSGAD-LCYSPMFHSRLFGESEDYRNKVFSTRTIPEER 75 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+ +Q G+DP + + AK+A D +++N+GCP + G +G+ L N L+ + Sbjct: 76 PLIIQFCGNDPEIMLKAAKIAAPY-CDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESII 134 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 + +SIPVT K RI D Q + ++ + K + +H R G Sbjct: 135 TKLHTELSIPVTAKIRIFPDPQKTLDYAKMIL-----KAGASILAVHGRLREQKG----- 184 Query: 185 NREIPPLDYPRVYQLKRDFPHLTM-SINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPG 241 D+ ++ L+++ P T+ NG I ++ +++ DGV+ + NP Sbjct: 185 -HFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPR 243 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGAR 299 I + D + I + Y L I H+ L + + Sbjct: 244 IFLPPSSPLMTLYPRIDD---MCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSIH 300 Query: 300 -QWRRYLSENAHKAGAD 315 R L++ + Sbjct: 301 TDIRSKLAQGCTPRDFE 317 >UniRef50_B1LWM8 TIM-barrel protein, nifR3 family n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1LWM8_METRJ Length = 341 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 120/305 (39%), Gaps = 31/305 (10%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE--HPVALQLG 71 +AP+ TD H R R + ++ +EMV G G+ +E +QL Sbjct: 27 LLAPLSGVTDLHMRRIARRCGADAVI-SEMVAAREFTRGSGEATLRAEGSGVDLHVVQLA 85 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G + +A+ A+LAEA G D I++N+GCP+ V G+ LM + + ++R V Sbjct: 86 GCEAGPMAEAARLAEAGGADVIDVNMGCPAKIVTGIASGSALMRDLDHAERLLASVRGAV 145 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 SIPVTVK R+G D D+ D + + +H R ++ Sbjct: 146 SIPVTVKMRLGWD--DASRNAADLAAR-AERLGLNAVTVHGRT--------RQQFYKGRA 194 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAVDRE 249 D+ + + + + NG + A+A L GVM+GR A P ++ V Sbjct: 195 DWAAIRAVVAAVS-IPVIANGDVTDFASARACLDASGAAGVMIGRAATGRPWLVGQVAAA 253 Query: 250 IFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENA 309 + G + + +L L+ G R R++L+ A Sbjct: 254 LTGRPAAEPSRSEQAALAAEHYAG--------------LLSLYGRDMGVRHARKHLAAYA 299 Query: 310 HKAGA 314 GA Sbjct: 300 ETGGA 304 >UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0F5_DESRD Length = 341 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 72/322 (22%), Positives = 122/322 (37%), Gaps = 21/322 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEE 62 D + RF ++PM+ T R L L +TEM + A++ + + Sbjct: 17 DKSLTNRFLLSPMVGVTHVALRRLLHDFGGFGLHWTEMCSASAVLQEDPRISPVFRFHRD 76 Query: 63 E-HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E + Q+ GS+P +A A+ + G+ +++N+GC V+ GA L+ + A Sbjct: 77 ELATLVCQIMGSEPETMAAAARRIQDEGFFGVDINMGCCVAAVRQQGAGAALLRDISRAA 136 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 V A+R V IP+ VK R G DQ K + I+H R A Sbjct: 137 AIVDAVRQAVDIPLFVKLRSGWTDQGPV---VVHAARACAKAGADALIVHPRLAPDRRTR 193 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREAYQN 239 P + R+I + + L + NG + + ++A A L+ G+ +GR A Sbjct: 194 PPQWRDI---------RAVCEAVDLPVFGNGNVFTADDATAMLRQTGCQGIALGRMAAAR 244 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGAR 299 P I A + +T V + M + +G L + M Sbjct: 245 PWIAAEWLGHFHPAPETYP---KVAQRMVELLWTSFPEGQALRLYRKFMNYFAANFAFGH 301 Query: 300 QWRRYLSENAHKAGADINVLEH 321 + R L+ +A + H Sbjct: 302 RLRSDLTRSATPEDLYKEIAHH 323 >UniRef50_Q30WR3 Dihydrouridine synthase family protein n=3 Tax=Deltaproteobacteria RepID=Q30WR3_DESDG Length = 376 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 66/288 (22%), Positives = 108/288 (37%), Gaps = 21/288 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHP- 65 +GR +APM R L L++T M + A+ ++ EE P Sbjct: 56 NGRLFLAPMAGLGHIAYRQVLESFGGCGLVFTGMCSARAVPTENPARSPVFSWRPEELPA 115 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + QL G+DP +A A+ E+ G+ +++N+GC + GA L+ + + V Sbjct: 116 LVCQLFGADPQDMAAAARRVESEGFFGVDINMGCSVAPIVKKGCGADLLRDPERAVRMVD 175 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+R VS+PV VK R G E + + G + + H R A Sbjct: 176 AVRRAVSVPVFVKMRTGW--SPDPEPAVNLARRLQDAG-ADALVFHPRVAPDRRTHRPRT 232 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL 243 I L +D + + NG + + A L+ DGV +GR A P I Sbjct: 233 AHIG---------LVKDAVDIPVIGNGDVFDAADCAAMLERTGCDGVSLGRLAIARPWIF 283 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 A R T D + A+ +E + + ++ Sbjct: 284 AQWTRGFVPEKQTYRD---TLFALMDALEAHYDPARAIKLYKKLIMYY 328 >UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synthase 1-like n=2 Tax=Eumetazoa RepID=UPI000180C543 Length = 626 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 60/291 (20%), Positives = 110/291 (37%), Gaps = 32/291 (10%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLA--YS 60 V S +F VAPM+D ++ R R L ++ M + +H + + S Sbjct: 10 RVLKSPKFVVAPMVDQSELPWRLLSRRHGA-QLCFSPMYSANTFVHDHTYRNKVVQDLSS 68 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E+HP+ +Q + + +KL E + ++LN+GCP + G FGA L + L+ Sbjct: 69 TEDHPLIVQFCSNSAENFLEASKLVEGL-CEGVDLNLGCPQHIAKRGHFGAYLQEDWDLI 127 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 + + + + I VT K R+ + + ++ C++ +H R G Sbjct: 128 IEIISTTKQHIGIGVTAKIRVFNEIDKTVKYAQML-----ETAGCDIITVHGRTREQKGP 182 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQ 238 + + +K D + + NG I+ + ++ +DGVMV Sbjct: 183 ------NTGLASWDHIKAVK-DNVDIPVFANGNIQYYCDIMRCMETTGVDGVMVAEGNLT 235 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHML 289 NP I + T + VV + + + L HM Sbjct: 236 NPMIFQDLS--------TPCNVYDVVEEYFALVAQY---PCPLSSARSHMF 275 >UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira RepID=B0S913_LEPBA Length = 337 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 67/295 (22%), Positives = 125/295 (42%), Gaps = 20/295 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEE 62 +V G +++PM +D R + + YTE V+T + G D + E Sbjct: 6 NVIIEGDVALSPMAGISDSPYRQITKRFG-SAFSYTEFVSTEQLKLGNAKSLDMFRFVEM 64 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 E P+ Q+ GSD + +++A + D I+LN+GC +V + GA L+ N +L Sbjct: 65 ERPIVFQIFGSDLDTVVNASEIAAEQKPDIIDLNMGCSVSKVSHNGSGAGLLKNIRLAGK 124 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 ++ +R+ ++PVT K R+G D +S +L V +H R ++ Sbjct: 125 MIEGIRNRTNLPVTAKIRLGWD-ANSLNYLETL--KVLEDSGVSAISVHGRTKAMA---- 177 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA--KAHLQHMDGVMVGREAYQNP 240 D+ + ++K ++ + NG ++S +EA K +D V++GR+A NP Sbjct: 178 ----YTGIADWNAIGEIKSRA-NVPIYGNGDVQSYKEALEKKKTYGVDLVLIGRKAIGNP 232 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 + ++ F + + M + S L +H + + I Sbjct: 233 WVFGKTPKQFFPWYQIKDVILEHLDLMLNF--YPTSDDYALILFRKHFIKYIENI 285 >UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54ES7_DICDI Length = 344 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 55/282 (19%), Positives = 113/282 (40%), Gaps = 33/282 (11%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPVALQLGG 72 APM+ ++ R ++ + + YT M+ + ++ + P+ +Q G Sbjct: 60 APMVRFSRLPFRMLVKKWGCD-ITYTPMIMAAEFNRSEAARDSDFTINKLDEPLIVQFGV 118 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 ++ L A+ + I++N GCP V FGA L+ + + + D VK + + V Sbjct: 119 NNAEELVSAAEKVKDY-CQGIDINCGCPQRWVMKEGFGANLLLHPERIYDMVKQINNRVP 177 Query: 133 IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLD 192 IP+++K R+ D +D+ E + + +H R + + P +D Sbjct: 178 IPISIKIRVQSDLKDTIELAKR-----AERIGVSWITVHGRTSAMKSSHP--------VD 224 Query: 193 YPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAVDREI 250 Y + +L +D L + NG + +L ++ + ++GVM R NP + D+ Sbjct: 225 YDAI-KLVKDNVTLPVFANGDVFTLSQSNEIREKTGVNGVMSARGLLTNPALFQGYDK-- 281 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 P+ ++ G + RH++ + Sbjct: 282 --------TPIECIKDFINIYSEYG--GLHPVIFHRHLMYML 313 >UniRef50_Q5KP54 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5KP54_CRYNE Length = 610 Score = 217 bits (553), Expect = 4e-55, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 114/333 (34%), Gaps = 66/333 (19%) Query: 10 SGRFSVAPMLDWTDRHCRYF------------------------LRLLSRNTLLYTEMVT 45 S +F VAPM+D ++ R +R + YT M+ Sbjct: 51 SPKFVVAPMVDQSELAWRLLSRSPLPPALAGPSETVTTPQGKAYIRHPGGAHVCYTPMIH 110 Query: 46 TGAIIHGKGD---------------------YLAYSEEEHPVALQLGGSDPAALAQCAKL 84 + KG+ + P+ +Q +DP L AK Sbjct: 111 AKVFVDAKGEGGRNGDGQFCLSLDEEGGEGTIGGVEGGDRPLIVQFCANDPDILLAAAKK 170 Query: 85 AEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGID 144 E R D +++N GCP + G +G+ L +L+ + + + +S+PVT K RI D Sbjct: 171 VEHR-CDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLISTLHENLSVPVTAKFRIFPD 229 Query: 145 DQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFP 204 + + + ++ H R + G + D+ + ++K+ Sbjct: 230 LDKTIAYA-----RMMEAAGAQILTCHGRTREMKG------QNTGLADWEYIREVKKAV- 277 Query: 205 HLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVA 262 + + NG I E+ ++ DGVM NP I + P+ Sbjct: 278 KVPVFANGNILYREDVDRCMEVTGCDGVMTAEGNLSNPAIF------MPPEHPHAHPPIT 331 Query: 263 VVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 V+ Y I L T I H+ L + + Sbjct: 332 VLAHRYLDIVEALDTPTAGSAIKAHLFRLLKPV 364 >UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH09_DESAA Length = 328 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 77/324 (23%), Positives = 121/324 (37%), Gaps = 24/324 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-----YLAYSEEE 63 + R +APM T R + L LLYT M ++ H E + Sbjct: 8 IANRLILAPMAGLTHIAFREVMALYGGYGLLYTGMAGAKSVPHENPKVSTVFSWREKELD 67 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 H Q+ GS P +A+ A+ EA G+ +++N GC + + GA L+ L A Sbjct: 68 H-TVCQIFGSVPETMAKAAERIEAEGFFGVDINCGCSARAICRFDSGAALLAKPDLAAQV 126 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 V+A+R V+IPV VK R G D ++ + + + I H R A Sbjct: 127 VRAVRKAVNIPVIVKFRTGWKDDPAHAVS---MARLFCDEGADALIFHPRVAP------- 176 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPG 241 + P + + L +D + + NG + SL++A L DGV +GR A P Sbjct: 177 -DLRTRPPKWEYIG-LVKDAVKVPVFGNGNVISLDDAAKMLSMSGCDGVALGRIALAQPW 234 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 I+A + G D AM + + T + Sbjct: 235 IMAQWSQ---GMKPALEDYKTAGAAMASFCAKRFEPRTAFLRFMKFSPYYCANFQFGHAL 291 Query: 302 RRYLSENAHKAGADINVLEHALKL 325 + L A + I VLE+ + Sbjct: 292 HKRLF-AAKEIDNIIPVLENFFQS 314 >UniRef50_B2KES4 Dihydrouridine synthase DuS n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KES4_ELUMP Length = 318 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 82/300 (27%), Positives = 134/300 (44%), Gaps = 24/300 (8%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPV 66 +APM TD R L + ++ EMV+ A+ + LA ++EHPV Sbjct: 16 KNNLMLAPMAGITDTPFRIHC-LNNGAGIVCAEMVSAKAVEYDNKKSVKMLAVDKKEHPV 74 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 ++Q+ G D +++ AK AEA G D I++N GCP ++ G L+ + +L+A V A Sbjct: 75 SMQIFGGDAESISIAAKAAEAAGADIIDINAGCPVKKINRAGAGCVLIKDEKLLASIVNA 134 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + VSIPVT+KTRIG+ D F D I ++ I+HAR A N Sbjct: 135 AVNSVSIPVTLKTRIGLTAGD---FKGDKIAKLAENEGAAAVIMHARYAG--------NV 183 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ-HMDGVMVGREAYQNPGILAA 245 P D + ++ + + NGGI + A + + G+MVGR A N I + Sbjct: 184 HGGPADLEALAKVV-SAVKIPVIGNGGIVDVNTADKMFETGVRGIMVGRGAIGNINIFKS 242 Query: 246 VDREIFGSSDTDADPVAVVRAMYPYIERE---LSQGTYLGHITRHMLGLFQGIPGARQWR 302 + D + +P V+ + I++ + + + + +G P A + R Sbjct: 243 I----INGCDIELNPKENVKIFFNLIKQNVNFYGEKNGIARSRKTVGFWIKGFPMAGEIR 298 >UniRef50_A7AQM0 Dihydrouridine synthase, putative n=1 Tax=Babesia bovis RepID=A7AQM0_BABBO Length = 355 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 121/307 (39%), Gaps = 30/307 (9%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPV 66 R+ APM++ ++ R R + + L YT M+ + + + S+++ P+ Sbjct: 11 RPRYVAAPMVNQSELPFRLLCRRYNVD-LTYTPMLHGRIFVENEKYRAVHFQTSDDDRPL 69 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 Q+ G D + Q A+L + ++LN+GCP ++G +G+ L+ LV V Sbjct: 70 IAQVCGDDAGTITQAARLLKGH-VSAVDLNLGCPQAIAKDGHYGSFLLDEPDLVTGIVSR 128 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + V I VT K R D+DS + + ++ G C+ +H R G Sbjct: 129 VTREVGIAVTCKIRKV--DKDSLQSTLNLCYSLEQSG-CKALTVHGRHRSEKG------T 179 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILA 244 + D+ + +K + + NGGI++ + + L + D VM + P + + Sbjct: 180 NVGAADWDAIRIIKSRL-RIPVIANGGIETFADVERCLSYTGADAVMSSESLLERPYLFS 238 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLG-LFQGIPGARQWRR 303 + D + ++ + R Q I H LFQ + R Sbjct: 239 GIT----------YDHLDIMDEYLGIVRRYPDQSPCC--IRGHAFKILFQHCQRHPEIRN 286 Query: 304 YLSENAH 310 L++ Sbjct: 287 RLTDAMS 293 >UniRef50_A6DU09 Dihydrouridine synthase family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DU09_9BACT Length = 334 Score = 217 bits (552), Expect = 5e-55, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 140/340 (41%), Gaps = 42/340 (12%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNT---LLYTEMVTTGAIIH--GKGDY--- 56 TD+ G ++APM D TD R L ++ ++++E ++T + H G Sbjct: 6 TDIKSPG-IALAPMEDVTDTVFRQILLETAQPKNLQVVFSEFISTDGLCHPIGHDKVIHR 64 Query: 57 LAYSEEEHPV--------ALQLGGSDPAALAQCA-KLAEARGYDEINLNVGCPSDRVQNG 107 S+EE + Q+ G +P ++ K + +D +++N+GCP ++ Sbjct: 65 FLISDEERKLLKEKNIKIVAQVWGKNPDKFSEAISKYVDPEVFDGVDINMGCPVAKIVKQ 124 Query: 108 MFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEM 167 + L+ ++ + V A + +PV+VKTR GI + E++ + E Sbjct: 125 GGCSALINTPEIAKELVLAAKAATKLPVSVKTRTGITAHKTEEWMTHLLEV-----EPAA 179 Query: 168 FIIHARKAWLSGLSPKENREIPPLDYPRVYQLK----RDFPHLTMSINGGIKSLEEAKAH 223 I+H R + + + + + R PH+ NG ++S+E+A Sbjct: 180 IILHGRTQ--------KQQSEGLASWDEIAKGARVRDRLKPHIPFWGNGDVRSIEQAHQL 231 Query: 224 LQH--MDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVV-RAMYPYIERELSQGTY 280 Q +DG M+GR + NP I + + + +A++ R Y SQ + Sbjct: 232 CQEHKLDGAMIGRGVFHNPWIFN--TDLLGDNVLPPEEKIALLWRHASLYTSFWGSQKNF 289 Query: 281 LGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLE 320 L + R QG PGA +R + + K +LE Sbjct: 290 LT-LRRFFKIYAQGFPGANAFRSEIMQ-TKKLDEVRALLE 327 >UniRef50_B8BUP5 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8BUP5_THAPS Length = 353 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 111/332 (33%), Positives = 150/332 (45%), Gaps = 80/332 (24%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH--------GKGDYLAYSEE-- 62 F +APMLD + RYF+RLL++ ++TEMV + H GD L + Sbjct: 9 FHIAPMLDVSTVEFRYFMRLLTKRAFIWTEMVVAETLWHQSNQKGVLSSGDDLELEPDLK 68 Query: 63 ------------EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFG 110 HPV Q+G +DP ++ GYD I+LN CPSDRV FG Sbjct: 69 RHCGWYEDQYLNPHPVVCQIGTNDPKQAEFATRVVHKLGYDRIDLNAECPSDRVAGREFG 128 Query: 111 ACLMGNAQLVADCVKAMRDVV-------SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKG 163 A LM + + V+AM D IPV+VKTRIG+D+ D++E L ++ + G Sbjct: 129 AALMRDHDTAIEVVRAMVDTAQSTKSDNPIPVSVKTRIGVDEFDTFEHLEGWVQRLVDAG 188 Query: 164 ECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH 223 C FIIHARK + GLSP +NR +PPL+YPRVY+L + FP NGGI SLE AK Sbjct: 189 -CTWFIIHARKVYTQGLSPAQNRTVPPLNYPRVYRLLQRFPSCDFWFNGGIMSLEHAKQV 247 Query: 224 -------------------------------------------------LQHMDGVMVGR 234 L ++ GVMVGR Sbjct: 248 AFGYTGVGDSDLIRETSSEETDCIDDDHTVPCQRCGVPHGSCIAPPRMSLPNLKGVMVGR 307 Query: 235 EAYQNPGILAAVDREIFGS-SDTDADPVAVVR 265 A +P LA +D +G SD + ++ Sbjct: 308 LARDHPSELATIDSHFYGEASDPCKNRRELME 339 >UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=Epsilonproteobacteria RepID=DUS_HELPJ Length = 328 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 61/329 (18%), Positives = 126/329 (38%), Gaps = 29/329 (8%) Query: 7 VHWSGR--FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSE 61 + + + +AP+ +TD R ++ + +EMV++ ++++ L S Sbjct: 1 MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVDVTT-SEMVSSHSLVYAFDKTSKMLEKSP 59 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E Q+ GS + + + + A I+ N GCP+ +V N G+ L+ + + Sbjct: 60 LEDHFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHL 119 Query: 121 ADCVKAMRDVVSIPVT-VKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 + +K +R+ + +T VK R+G + + + I + ++H R Sbjct: 120 VEILKVIRENTNKKITSVKVRLGFEKK-----IPKEIAHALNDAPVDYVVVHGRTRSDRY 174 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAY 237 K +DY + +K+ + NG I S+++A LQ DG+M+GR Sbjct: 175 QKDK-------IDYESIALMKKILKK-PVIANGEIDSVKKAFEVLQITQADGLMIGRATL 226 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 + P I + R V+ +E +G + +++ +G Sbjct: 227 RAPWIFWQI-RNNTTELPAVVKKDLVLEHFDKMVEFYGDRGVIM--FRKNLHAYAKGEMQ 283 Query: 298 ARQWR---RYLSENAHKAGADINVLEHAL 323 A +R L+E + + Sbjct: 284 ASAFRNCVNTLTEIKSMRESIEEFFNQEM 312 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8CWK7 tRNA-dihydrouridine synthase A n=32 Tax=Gammapro... 363 5e-99 UniRef50_Q8EAJ0 tRNA-dihydrouridine synthase A n=121 Tax=Bacteri... 348 2e-94 UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteo... 338 2e-91 UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales ... 335 1e-90 UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia... 328 1e-88 UniRef50_Q88KX0 tRNA-dihydrouridine synthase A n=482 Tax=Bacteri... 327 3e-88 UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii Rep... 326 9e-88 UniRef50_D0LY25 TIM-barrel protein, yjbN family n=3 Tax=Bacteria... 321 2e-86 UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisell... 316 6e-85 UniRef50_B0C3E9 tRNA-dihydrouridine synthase A n=4 Tax=Bacteria ... 315 1e-84 UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidami... 315 2e-84 UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidami... 312 8e-84 UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteo... 311 2e-83 UniRef50_Q2RTX4 Dihydrouridine synthase TIM-barrel protein yjbN ... 311 2e-83 UniRef50_A1AW94 TIM-barrel protein, yjbN family n=2 Tax=Gammapro... 311 2e-83 UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacter... 310 4e-83 UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellul... 308 1e-82 UniRef50_C9RM69 TIM-barrel protein, yjbN family n=1 Tax=Fibrobac... 305 1e-81 UniRef50_Q22A31 TIM-barrel protein, yjbN family n=2 Tax=cellular... 304 4e-81 UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes... 304 4e-81 UniRef50_A5WG83 TIM-barrel protein, yjbN family n=2 Tax=Moraxell... 303 6e-81 UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostri... 302 8e-81 UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostri... 301 2e-80 UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonada... 301 3e-80 UniRef50_B6BT49 tRNA-dihydrouridine synthase A n=4 Tax=SAR11 clu... 299 7e-80 UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiob... 299 7e-80 UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bactero... 299 1e-79 UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfa... 298 2e-79 UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobact... 297 3e-79 UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax... 296 5e-79 UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=A... 296 8e-79 UniRef50_Q5ZVH8 Zinc binding TIM barrel protein, YjbN family n=6... 295 1e-78 UniRef50_Q04VP3 TRNA-dihydrouridine synthase n=4 Tax=Leptospira ... 294 3e-78 UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organi... 294 3e-78 UniRef50_A0EAZ6 Chromosome undetermined scaffold_87, whole genom... 294 4e-78 UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria ... 294 4e-78 UniRef50_A5GPV9 TRNA-dihydrouridine synthase A n=25 Tax=cellular... 293 6e-78 UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family ... 292 1e-77 UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostri... 291 2e-77 UniRef50_A8PLS2 tRNA-dihydrouridine synthase A n=1 Tax=Rickettsi... 291 2e-77 UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachl... 291 2e-77 UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3... 291 2e-77 UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=C... 290 4e-77 UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis... 290 4e-77 UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natrana... 289 6e-77 UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax... 288 1e-76 UniRef50_D0KZZ8 Dihydrouridine synthase DuS n=1 Tax=Halothiobaci... 288 2e-76 UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisell... 288 2e-76 UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroide... 287 2e-76 UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chlorof... 287 3e-76 UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicute... 287 4e-76 UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bde... 287 4e-76 UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteure... 286 6e-76 UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes ... 286 8e-76 UniRef50_C6XGY7 tRNA-dihydrouridine synthase A n=1 Tax=Candidatu... 285 1e-75 UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C... 284 2e-75 UniRef50_Q87AY2 tRNA-dihydrouridine synthase A n=15 Tax=Bacteria... 284 3e-75 UniRef50_C9MVS9 tRNA dihydrouridine synthase A n=2 Tax=Leptotric... 284 3e-75 UniRef50_A5EXU5 TRNA-dihydrouridine synthase A n=1 Tax=Dicheloba... 284 3e-75 UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ge... 284 4e-75 UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like... 283 5e-75 UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonella... 283 6e-75 UniRef50_Q5SMC7 tRNA-dihydrouridine synthase n=3 Tax=Thermus Rep... 282 9e-75 UniRef50_A9W195 Dihydrouridine synthase DuS n=41 Tax=Bacteria Re... 282 9e-75 UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiale... 281 3e-74 UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogen... 280 3e-74 UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepI... 280 5e-74 UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2... 280 7e-74 UniRef50_Q0JEG3 Os04g0278900 protein n=3 Tax=Oryza sativa RepID=... 279 9e-74 UniRef50_D1AMN2 Dihydrouridine synthase DuS n=3 Tax=Bacteria Rep... 279 1e-73 UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xeno... 279 1e-73 UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes Re... 277 3e-73 UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14... 277 3e-73 UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coe... 277 4e-73 UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3... 277 4e-73 UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Ac... 277 4e-73 UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Ta... 276 6e-73 UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Stre... 276 7e-73 UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaprote... 276 8e-73 UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3... 276 9e-73 UniRef50_A6U9Y2 Dihydrouridine synthase DuS n=3 Tax=Rhizobiaceae... 275 1e-72 UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister i... 275 2e-72 UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothi... 274 2e-72 UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Ta... 274 2e-72 UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verruco... 274 3e-72 UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaeroc... 273 7e-72 UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=un... 273 7e-72 UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacte... 273 8e-72 UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira c... 272 8e-72 UniRef50_C6NVP5 tRNA-dihydrouridine synthase A n=1 Tax=Acidithio... 272 8e-72 UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Cho... 272 1e-71 UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococ... 272 1e-71 UniRef50_A8MRX7 Uncharacterized protein At3g63510.2 n=5 Tax=Arab... 272 1e-71 UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenopho... 272 1e-71 UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=... 271 2e-71 UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa... 271 3e-71 UniRef50_Q9FI41 Emb|CAB87804.1 n=16 Tax=Embryophyta RepID=Q9FI41... 270 4e-71 UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaeroc... 270 4e-71 UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3... 270 4e-71 UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase... 269 9e-71 UniRef50_C7NAG3 Dihydrouridine synthase DuS n=1 Tax=Leptotrichia... 269 9e-71 UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteoba... 267 3e-70 UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=... 267 3e-70 UniRef50_B6KL93 Dihydrouridine synthase domain-containing protei... 267 4e-70 UniRef50_B7J4N8 tRNA-dihydrouridine synthase A n=2 Tax=Acidithio... 267 4e-70 UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Al... 267 4e-70 UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotale... 267 6e-70 UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=... 266 8e-70 UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia ... 265 1e-69 UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Euka... 265 1e-69 UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 265 2e-69 UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinob... 265 2e-69 UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibac... 264 3e-69 UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n... 264 4e-69 UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium s... 264 4e-69 UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured ... 264 4e-69 UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3... 263 5e-69 UniRef50_Q8I2W5 Dihydrouridine synthase, putative n=8 Tax=Plasmo... 263 5e-69 UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256... 263 6e-69 UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured mar... 263 7e-69 UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteob... 263 8e-69 UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3... 263 8e-69 UniRef50_B1XUD8 Dihydrouridine synthase DuS n=2 Tax=Polynucleoba... 262 9e-69 UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bi... 262 1e-68 UniRef50_D0NZC8 tRNA-dihydrouridine synthase, putative n=1 Tax=P... 262 1e-68 UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax... 262 1e-68 UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostri... 262 1e-68 UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales ... 262 2e-68 UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Ta... 262 2e-68 UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Ta... 261 2e-68 UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia R... 261 2e-68 UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verruco... 261 3e-68 UniRef50_C1FGA1 Predicted protein (Fragment) n=4 Tax=Mamiellales... 260 3e-68 UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerof... 260 4e-68 UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dict... 260 4e-68 UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 ... 260 6e-68 UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=... 260 6e-68 UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=A... 260 7e-68 UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadac... 259 8e-68 UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tet... 259 9e-68 UniRef50_B2RZT4 NIFR3-like protein n=23 Tax=Borrelia RepID=B2RZT... 259 1e-67 UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae Re... 258 2e-67 UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga ol... 258 2e-67 UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera Rep... 258 2e-67 UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria R... 258 2e-67 UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibr... 258 2e-67 UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine... 258 2e-67 UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacte... 258 3e-67 UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium... 257 3e-67 UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME 257 3e-67 UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriace... 257 5e-67 UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_D... 257 5e-67 UniRef50_Q4N9T6 TRNA-dihydrouridine synthase A, putative n=2 Tax... 257 6e-67 UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalk... 256 7e-67 UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax... 256 8e-67 UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Pe... 255 1e-66 UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylob... 255 1e-66 UniRef50_B7XK29 NIFR3-like protein n=1 Tax=Enterocytozoon bieneu... 255 1e-66 UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamie... 255 1e-66 UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=S... 255 2e-66 UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Corioba... 254 2e-66 UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricale... 254 3e-66 UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3... 254 3e-66 UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepI... 253 7e-66 UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-bind... 253 7e-66 UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium... 253 8e-66 UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogen... 252 9e-66 UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 252 2e-65 UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota R... 252 2e-65 UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota ... 251 2e-65 UniRef50_A7AWB5 Dihydrouridine synthase (Dus) domain containing ... 251 2e-65 UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomyco... 251 3e-65 UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 ... 251 3e-65 UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protei... 250 6e-65 UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Plancto... 250 7e-65 UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliang... 249 8e-65 UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3... 249 8e-65 UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassif... 249 9e-65 UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 249 1e-64 UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisp... 249 1e-64 UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genom... 249 2e-64 UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collins... 248 2e-64 UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propioni... 247 3e-64 UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=I... 247 4e-64 UniRef50_C4VAN5 Putative uncharacterized protein n=1 Tax=Nosema ... 247 5e-64 UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacte... 247 6e-64 UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 246 6e-64 UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bactero... 246 7e-64 UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacter... 246 8e-64 UniRef50_Q056Y8 TRNA-dihydrouridine synthase A n=1 Tax=Buchnera ... 246 8e-64 UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agarica... 246 9e-64 UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Eut... 245 1e-63 UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea Rep... 245 1e-63 UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mo... 245 1e-63 UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobi... 245 2e-63 UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=... 244 4e-63 UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovib... 244 4e-63 UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter ... 243 4e-63 UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 243 4e-63 UniRef50_Q9T0J6 tRNA-dihydrouridine synthase 3-like n=10 Tax=Mag... 243 6e-63 UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ... 243 6e-63 UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasid... 242 1e-62 UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 242 1e-62 UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=A... 242 1e-62 UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococca... 242 1e-62 UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synt... 242 2e-62 UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteri... 241 2e-62 UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcu... 240 5e-62 UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibri... 240 6e-62 UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii Re... 239 9e-62 UniRef50_Q9HGN6 tRNA-dihydrouridine synthase 1 n=1 Tax=Schizosac... 239 9e-62 UniRef50_Q4P1U2 tRNA-dihydrouridine synthase 3 n=4 Tax=Eukaryota... 238 1e-61 UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=R... 238 1e-61 UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira ... 238 1e-61 UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aq... 238 2e-61 UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91... 238 2e-61 UniRef50_B7GAU2 Predicted protein (Fragment) n=2 Tax=Bacillariop... 238 3e-61 UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinom... 237 3e-61 UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobi... 237 3e-61 UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 237 3e-61 UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=P... 236 9e-61 UniRef50_Q582L4 TRNA-dihydrouridine synthase 3, putative n=5 Tax... 236 1e-60 UniRef50_B8C4H3 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 235 1e-60 UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 ... 235 2e-60 UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira ... 235 2e-60 UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 ... 233 5e-60 UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinom... 233 6e-60 UniRef50_A8PTG4 tRNA-dihydrouridine synthase 3 n=1 Tax=Malassezi... 233 7e-60 UniRef50_C1E9S0 Predicted protein n=2 Tax=cellular organisms Rep... 233 7e-60 UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogace... 233 8e-60 UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalob... 232 9e-60 UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus... 232 2e-59 UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseri... 231 3e-59 UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candida... 231 3e-59 UniRef50_B2KES4 Dihydrouridine synthase DuS n=1 Tax=Elusimicrobi... 230 4e-59 UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga l... 230 4e-59 UniRef50_Q4DCG2 Putative uncharacterized protein n=2 Tax=Trypano... 230 4e-59 UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=A... 230 6e-59 UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteo... 229 8e-59 UniRef50_Q5KP54 Putative uncharacterized protein n=1 Tax=Filobas... 229 9e-59 UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibri... 229 1e-58 UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseria... 228 3e-58 UniRef50_B0ESC7 tRNA-dihydrouridine synthase, putative n=2 Tax=E... 228 3e-58 UniRef50_D0MWM4 tRNA-dihydrouridine synthase 3 n=1 Tax=Phytophth... 227 3e-58 UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibac... 227 4e-58 UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyce... 227 5e-58 UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conex... 227 5e-58 UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=E... 227 6e-58 UniRef50_A8QBG9 PP3111 protein, putative n=1 Tax=Brugia malayi R... 226 7e-58 UniRef50_D2VPF2 Predicted protein n=2 Tax=Naegleria gruberi RepI... 226 7e-58 Sequences not found previously or not previously below threshold: >UniRef50_Q8CWK7 tRNA-dihydrouridine synthase A n=32 Tax=Gammaproteobacteria RepID=DUSA_VIBVU Length = 326 Score = 363 bits (932), Expect = 5e-99, Method: Composition-based stats. Identities = 237/323 (73%), Positives = 274/323 (84%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPV 66 + S R SVAPMLDWTDRHCRYF RL+++ TLLYTEM+TTGAIIHGKGD+LAY++EEHPV Sbjct: 1 MTHSCRLSVAPMLDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGDFLAYNQEEHPV 60 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 ALQLGGS+P LA CAKLA RGYDE+NLNVGCPSDRVQNG FGACLM QLVADCV A Sbjct: 61 ALQLGGSNPQDLATCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAA 120 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 M++VV IPVTVKTRIGIDDQDSYEFL DF++ VS KG CE F IHARKAWLSGLSPKENR Sbjct: 121 MKEVVDIPVTVKTRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENR 180 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAV 246 EIPPLDYPR YQLK+DF HLT++INGG+KSLEEAK HLQH+DGVM+GREAYQ+P +LA+V Sbjct: 181 EIPPLDYPRAYQLKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASV 240 Query: 247 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLS 306 D+E+FGS +V MYPYIE++L+ G YLGH+TRHMLGLFQ +PGARQWRR++S Sbjct: 241 DQELFGSQSPIKKRRQIVEEMYPYIEQQLANGAYLGHMTRHMLGLFQNMPGARQWRRHIS 300 Query: 307 ENAHKAGADINVLEHALKLVADK 329 ENAHK G+ I VL+ AL + + Sbjct: 301 ENAHKPGSGIEVLQQALAKIPQE 323 >UniRef50_Q8EAJ0 tRNA-dihydrouridine synthase A n=121 Tax=Bacteria RepID=DUSA_SHEON Length = 335 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 228/315 (72%), Positives = 258/315 (81%), Gaps = 1/315 (0%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGG 72 FS+APMLDWTDRH RYF RL+S N LLYTEMVTTGAI+HG+GDYL Y++EEHP+ALQLGG Sbjct: 16 FSIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQEEHPLALQLGG 75 Query: 73 SDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS 132 S+P LA+CAKLA RGYDE+NLNVGCPSDRVQNG FGACLM +LVA+CV AM+ VV Sbjct: 76 SNPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVD 135 Query: 133 IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLD 192 IPVTVKTRIGID+QDSYEFL FI+TV KG C FIIHARKAWL GLSPKENREIPPLD Sbjct: 136 IPVTVKTRIGIDEQDSYEFLTHFIDTVMAKG-CGEFIIHARKAWLQGLSPKENREIPPLD 194 Query: 193 YPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFG 252 Y RVYQLKRD+P L +SINGGI SLE+A+ HLQH+DGVMVGREAYQNP +LA VD+ + G Sbjct: 195 YDRVYQLKRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYMLAQVDQVLCG 254 Query: 253 SSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKA 312 S+ AV+ AM PYIE L G L HITRHM+GLFQG+PGAR WRRYLSENAHK Sbjct: 255 STKAVMSREAVIEAMLPYIEAHLQVGGRLNHITRHMIGLFQGLPGARAWRRYLSENAHKN 314 Query: 313 GADINVLEHALKLVA 327 GA I V++ A + V Sbjct: 315 GAGIEVVKLAYQSVQ 329 >UniRef50_Q2SJJ8 TRNA-dihydrouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2SJJ8_HAHCH Length = 349 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 193/320 (60%), Positives = 229/320 (71%), Gaps = 2/320 (0%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQL 70 RFSVAPM+DWTDRH RY RLLSR+T LYTEMVTTGAIIHG + +L ++ EEHP+A+QL Sbjct: 19 RFSVAPMMDWTDRHYRYLARLLSRHTYLYTEMVTTGAIIHGDRNRFLDFNAEEHPIAVQL 78 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GGS+P L +CAK+ E GYDEINLNVGCPSDRVQN M GACLMG + VA+CV AM Sbjct: 79 GGSNPDELKECAKICEDWGYDEINLNVGCPSDRVQNNMIGACLMGYPERVAECVAAMCSA 138 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 VSIPVTVK RIGIDDQDS EFL +F+ TV G C FIIHARKA L GLSPKENREIPP Sbjct: 139 VSIPVTVKHRIGIDDQDSEEFLLNFVRTVKAAG-CSTFIIHARKAILKGLSPKENREIPP 197 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L YPR Y +K+ FP L + INGGIK+++E+++HLQ +DGVM+GREAYQ P +LA VD + Sbjct: 198 LIYPRAYLIKQTFPELEIIINGGIKTMDESESHLQEVDGVMIGREAYQRPWMLADVDHRL 257 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAH 310 F + YIER G + H+ RH LGLF G G +Q+RRYLSENA Sbjct: 258 FHCPPPSFSATDIGYQFLEYIERNYQNGVAVWHMARHALGLFHGQKGGKQFRRYLSENAI 317 Query: 311 KAGADINVLEHALKLVADKR 330 K A V AL +V+ + Sbjct: 318 KRTASPTVFRDALDIVSSYK 337 >UniRef50_B1XI00 Dihydrouridine synthase A n=8 Tax=Chroococcales RepID=B1XI00_SYNP2 Length = 344 Score = 335 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 176/319 (55%), Positives = 217/319 (68%), Gaps = 2/319 (0%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVAL 68 SVAPM+D TDRH RY +R ++R TLLYTEM+TT AIIHG + L + EHP++L Sbjct: 11 PHLLSVAPMMDRTDRHFRYLMRRITRRTLLYTEMITTQAIIHGDRPKLLDFDAAEHPISL 70 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 QLGG +P LA+CAK+ E GYDEINLNVGCPS RVQ G FGACLM +LVADCV AM+ Sbjct: 71 QLGGDNPKELAECAKVGEDWGYDEINLNVGCPSPRVQQGNFGACLMTQPELVADCVAAMQ 130 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 V+IPVTVK RIG+D+QDSY LC FI + C+ F +HARKAWL GLSPKENR + Sbjct: 131 GAVNIPVTVKHRIGVDEQDSYADLCRFI-EIVSATGCDRFSVHARKAWLQGLSPKENRTV 189 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDR 248 PPL Y VY+LK+DFPHL + INGGI +LE + HL +D VMVGR AY NP + A VDR Sbjct: 190 PPLRYADVYRLKQDFPHLWIEINGGITTLEHIQTHLTQVDAVMVGRAAYDNPYLFATVDR 249 Query: 249 EIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSEN 308 +I+G + +V M PYIER G L I+RHML LF G PG + W+R+++E Sbjct: 250 DIYGEAIQPKSRHEIVEEMLPYIERATKAGVKLHSISRHMLSLFLGQPGTKAWKRFITEE 309 Query: 309 AHKAGADINVLEHALKLVA 327 ++E AL LV+ Sbjct: 310 GRGTTVGREIIEQALALVS 328 >UniRef50_C9XSF8 tRNA-dihydrouridine synthase n=24 Tax=Clostridia RepID=C9XSF8_CLODC Length = 322 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 69/331 (20%), Positives = 141/331 (42%), Gaps = 23/331 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAY 59 + ++ + ++PM TD R + LLYTEM+ A+ + L Sbjct: 2 KIGNLELKNKVFLSPMAGVTDLPFRLICKEQGC-GLLYTEMINGKALCYDDENTKKMLKI 60 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 EEEHPVA+Q+ GS+P + + A++ + +++N+GCP+ +V G+ LM N +L Sbjct: 61 EEEEHPVAVQIFGSEPEFMGRAAEIMNDYSNEILDINMGCPAPKVVKNGDGSALMKNPKL 120 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 + ++A+ PVT+K R G DD I ++ IH R Sbjct: 121 AEEVLRAVVKNSKKPVTLKIRKGWDDNSVNAVE---IAKIAEDCGISALAIHGRT----- 172 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAY 237 +E D+ + ++K++ + + NG + ++E++ L D +M+GR A Sbjct: 173 ---REQFYTGKADWDIIAEIKKNLS-IPVIGNGDVFTIEDSINMLDKTGCDAIMIGRGAQ 228 Query: 238 QNPGILAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 NP I ++ + + ++ E + + + +H+ + Sbjct: 229 GNPWIFKRINHYMNTGEILPEPTLNEKISTAIKHLKLAVEEHGEYVAVREMRKHIAWYLK 288 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALK 324 G+ + + R +++ ++ LE+ ++ Sbjct: 289 GLRNSAKLRDEINK-IEDYQEVVSKLEYYME 318 >UniRef50_Q88KX0 tRNA-dihydrouridine synthase A n=482 Tax=Bacteria RepID=DUSA_PSEPK Length = 336 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 193/329 (58%), Positives = 234/329 (71%), Gaps = 2/329 (0%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYS 60 P T S RFSVAPM+DWTDRHCR+FLRLLSR TLLYTEMVTTGA++H +L + Sbjct: 9 PHTTRPEPSRRFSVAPMMDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHD 68 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 EHP+ALQLGGS PA LA CA+LAE GYDE+NLNVGCPSDRVQN M GACLM + LV Sbjct: 69 ASEHPLALQLGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALV 128 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 ADCVKAMRD VS PVTVK RIGI+ +DSY L DF+ V G C F +HAR A L GL Sbjct: 129 ADCVKAMRDAVSTPVTVKHRIGINGRDSYAELSDFVGQVREAG-CRSFTVHARIAILEGL 187 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNP 240 SPKENREIPPL Y QLKRDFP L + +NGGIK+L+E +AHL+ DGVM+GREAY NP Sbjct: 188 SPKENREIPPLRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNP 247 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 +LA VD+++FGS + + PYI + G + H+TRH+LGL QG GAR+ Sbjct: 248 YLLAEVDQQLFGSDAPVVSRSEALAQLRPYIVAHMESGGAMHHVTRHILGLAQGFKGARR 307 Query: 301 WRRYLSENAHKAGADINVLEHALKLVADK 329 +R+ LS + HKA + V + A++L+ + Sbjct: 308 FRQLLSADIHKAAEPLAVFDQAVELLQGR 336 >UniRef50_A9KG09 NIFR3-like protein n=6 Tax=Coxiella burnetii RepID=A9KG09_COXBN Length = 353 Score = 326 bits (835), Expect = 9e-88, Method: Composition-based stats. Identities = 185/331 (55%), Positives = 231/331 (69%), Gaps = 11/331 (3%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEH 64 + + R S+APM+ TDRH R F+R +SR+ LLYTEMVTTGA++ GK L YS EEH Sbjct: 24 RLMLNRRISIAPMMGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEH 83 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+ALQ+GGSDP +LA CA+LAE +G+DEINLNVGCPS RV G FGACL+ A+LVADCV Sbjct: 84 PLALQVGGSDPQSLALCARLAEEKGFDEINLNVGCPSGRVTAGRFGACLLKEAELVADCV 143 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 AM V+IPV+VKTR G+DDQDSYE L F+ TV+ G C +FIIHARKAWL GLSP E Sbjct: 144 AAMSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAG-CRIFIIHARKAWLKGLSPAE 202 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILA 244 NR +PPL YP VYQLK+DFP L + INGGIK++E HL+ +DGVM+GREAY NP A Sbjct: 203 NRTVPPLAYPMVYQLKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCA 262 Query: 245 AVDRE--------IFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 A D + T P V+ PY+ ++L+ G L +TRH+ GLFQG P Sbjct: 263 AFDDLSKPVFSLGVADKKQTPLTPKRVLLRYLPYMAKQLANGVPLYAMTRHLNGLFQGQP 322 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVA 327 GA++WRR+L EN + G I +E AL+L + Sbjct: 323 GAKKWRRFLHENTRREGP-IAAIEEALRLAS 352 >UniRef50_D0LY25 TIM-barrel protein, yjbN family n=3 Tax=Bacteria RepID=D0LY25_HALO1 Length = 376 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 181/313 (57%), Positives = 217/313 (69%), Gaps = 2/313 (0%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVALQLG 71 SVAPM++ TDRH RYFLR +SR+TLLYTEM+ TG IIHG + YL +SE EHP+ALQLG Sbjct: 42 LSVAPMMECTDRHFRYFLRQISRHTLLYTEMIVTGTIIHGDRPRYLDFSEAEHPIALQLG 101 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G D ALA CA++AE GYDE+NLNVGCPS RV +G FGACLM ++VA V+AMR V Sbjct: 102 GDDAEALATCARIAEDWGYDEVNLNVGCPSSRVSSGSFGACLMARPEVVARAVEAMRAAV 161 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 +IPVTVK RIGIDD+D YE + +F+ V+ G + F +HARKAWLSGLSPKENRE+PPL Sbjct: 162 AIPVTVKHRIGIDDRDRYEDMREFVRVVAEAG-ADRFSVHARKAWLSGLSPKENREVPPL 220 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 251 Y V++LKR+FPHL + INGGI L+ A+ L H+D VM+GR AY P I A D F Sbjct: 221 RYADVHRLKREFPHLPIEINGGIVDLDSAQEQLAHVDAVMIGRAAYNTPWIFAEADARFF 280 Query: 252 GSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHK 311 GS AVV AM Y+E + +G L ITRHM LF G GAR WRRYL+E A Sbjct: 281 GSVAPTPTQTAVVEAMIDYVEAQRGRGVPLHRITRHMFQLFAGQRGARGWRRYLTEQAKS 340 Query: 312 AGADINVLEHALK 324 A VL AL Sbjct: 341 RDAGPEVLRVALD 353 >UniRef50_A7NDQ7 tRNA dihydrouridine synthase n=17 Tax=Francisella RepID=A7NDQ7_FRATF Length = 327 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 159/321 (49%), Positives = 217/321 (67%), Gaps = 4/321 (1%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL-AYSEEEHPVALQL 70 + +APMLDWTDRH RY +RL++R+T+LYTEMVT AI+HG ++L Y+ +E+PV LQL Sbjct: 7 KICIAPMLDWTDRHYRYMMRLITRHTMLYTEMVTLNAILHGNKEFLLKYNPQENPVTLQL 66 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG P C KLAE Y+EIN+NVGCPS+RV+ G FG LM +LVADCVKAM+D Sbjct: 67 GGCVPKDFISCGKLAEELDYNEININVGCPSERVKKGNFGLSLMAEPELVADCVKAMKDN 126 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 ++IP++VK RIG D DSYE L +F++ G + IHARK WLSGLSPKENR IP Sbjct: 127 LNIPISVKCRIGYDHNDSYEELYNFVDKQVQAG-IDYLCIHARKGWLSGLSPKENRTIPE 185 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L Y VY +K+DFP+L + INGGI +++E + HL+++D VM+GREAY NP + D Sbjct: 186 LKYDVVYSIKKDFPNLELGINGGITTIQEIQQHLKYVDSVMIGREAYHNPMLFKDFDNIF 245 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSEN 308 + T+ + + M YI+ ++ Y L +IT+H L LF G+P A+ +RRYLSEN Sbjct: 246 YNQPTTNISALEIAYKMAEYIKDQMDNDPYIKLNNITKHTLNLFNGLPNAKVYRRYLSEN 305 Query: 309 AHKAGADINVLEHALKLVADK 329 A K A+++ AL++ +K Sbjct: 306 ATKKEANVDTFLTALEVFENK 326 >UniRef50_B0C3E9 tRNA-dihydrouridine synthase A n=4 Tax=Bacteria RepID=B0C3E9_ACAM1 Length = 335 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 160/317 (50%), Positives = 207/317 (65%), Gaps = 3/317 (0%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL-AYSEEEHPVALQL 70 SVAPM+D TDRH RYF+R +++ TLLYTEMVT+ AI++G +L +S E P+ LQ+ Sbjct: 12 PVSVAPMMDRTDRHFRYFMRQITQRTLLYTEMVTSAAILNGDRHHLLDFSPIEKPLVLQV 71 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG +P LA+CA++A GYDEINLNVGCPS RVQNG FGACLM VA CV+AM Sbjct: 72 GGDNPQDLAECARIATDWGYDEINLNVGCPSSRVQNGHFGACLMAQPDRVAACVEAMMQA 131 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 +PV+VK RIGIDD D YE + F+ TV+ C++F +HARKAWL GLSPKENR+IPP Sbjct: 132 THLPVSVKHRIGIDDCDRYEDMAHFVQTVA-ASGCQIFSVHARKAWLKGLSPKENRDIPP 190 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L Y VY+LK++F HL + INGG L + L +D VM+GR AY NP + A VDR+ Sbjct: 191 LRYEDVYRLKQNFSHLWIEINGGFIQLFQVHNQLPKVDAVMIGRAAYDNPYLFATVDRDF 250 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQG-TYLGHITRHMLGLFQGIPGARQWRRYLSENA 309 + + V +AM Y+E +G ITRHML LF G PG+R W+R L+E Sbjct: 251 YHEDRSAPSRHKVAQAMMDYLEEWKIKGLLKPHSITRHMLQLFSGQPGSRAWKRLLTEQG 310 Query: 310 HKAGADINVLEHALKLV 326 + A +++ AL V Sbjct: 311 CRPDAGPDIIHQALDKV 327 >UniRef50_D2RLJ7 TIM-barrel protein, nifR3 family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RLJ7_ACIFE Length = 331 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 83/327 (25%), Positives = 137/327 (41%), Gaps = 21/327 (6%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVAL 68 ++APM TD R R L + +EMV+ A++ L EHPVA+ Sbjct: 18 PIALAPMAGVTDLPFRVICRELGADY-TVSEMVSAKALLFKNPKTFAMLEVDPREHPVAI 76 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 QL GS P L + AK+ G D I+ N+GCP ++ G+ LM + + C+ A+ Sbjct: 77 QLFGSVPEELVKGAKIVAEHGADIIDFNMGCPVHKIVANGEGSALMKDPERAYACLAALV 136 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 D V PVTVK R G D+ I ++ K +H R + Sbjct: 137 DAVDRPVTVKFRAGWDEDHRNAVE---IARLAEKAGVAAVAVHGRT--------RGQFYS 185 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAV 246 D+ + Q+K + + NG + + ++A L H DGVM+ R A NP I V Sbjct: 186 GKADWDIIRQVKEAVS-IPVLGNGDVFTAQDALDLLAATHCDGVMIARGAQGNPWIFREV 244 Query: 247 DREIFGSSDTD---ADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 + G + + A+VR + + + + H F G+P + +R Sbjct: 245 QAVLAGKTIPPVTLEERFAMVRRHLRDLTAFKGEKVAIREMRHHGACYFTGLPHSAHYRN 304 Query: 304 YLSENAHKAGADINVLEHALKLVADKR 330 +++ K + + E+ +L++ R Sbjct: 305 AINQCLTKEAFEEVLEEYEGELISSGR 331 >UniRef50_C0WDP2 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDP2_9FIRM Length = 321 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 81/325 (24%), Positives = 137/325 (42%), Gaps = 22/325 (6%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPV 66 +APM TD R R + +EMV+ A+++ L +EHP Sbjct: 8 PFPVVLAPMAGVTDLPFRVICRENGADY-TVSEMVSAKALLYKNQKTFAMLTIDPKEHPT 66 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 A+QL GS P+ LA K+ E+RG D I++N+GCP ++ + G+ LM + V + A Sbjct: 67 AIQLFGSVPSELAAAGKIVESRGADMIDVNMGCPVHKIVSNGEGSALMKDPDKVYAILAA 126 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + D VSIPVTVK R G D+ + I ++ K +H R + Sbjct: 127 LVDAVSIPVTVKFRAGWDEAHKNAAV---IAQMAEKAGVSAVCVHGRT--------RAQF 175 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILA 244 D+ + +K + + NG I E+A + DGVM+ R A NP I Sbjct: 176 YQGKADWDIIRAVKESV-GIPVLGNGDIFHAEDALRMKEETGCDGVMIARGAEGNPWIFR 234 Query: 245 AVDREIFGSSDTDA---DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 V + G + + + A++R + + + + H G+P + + Sbjct: 235 DVKALLHGKAISPVSVQERFAMIRRHLHDLILFKGERVGVREMRHHGAMYLTGLPHSAYY 294 Query: 302 RRYLSENAHKAGADINVLEHALKLV 326 R +++ + A + VL + + Sbjct: 295 RNTINQAQTE-EALLAVLGEYEEKL 318 >UniRef50_Q2LR94 TRNA-dihydrouridine synthase n=2 Tax=Deltaproteobacteria RepID=Q2LR94_SYNAS Length = 326 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 72/333 (21%), Positives = 132/333 (39%), Gaps = 23/333 (6%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYL 57 M + +APM ++ R R L +TEM++ ++ G Y+ Sbjct: 1 MIVIGSLIIKNNVILAPMAGISNLPFRMMAREAGC-ALAFTEMISANGLVRGIEKSQQYM 59 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 ++ P+ +Q+ G+DP +A ++ + G D I+LN+GCP +V GA L+ + Sbjct: 60 KSCIDDKPLGVQIFGNDPTTMADAVRIVDDYGADLIDLNMGCPVKKVVKNGAGAALLKDP 119 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 LV+ ++++R P+TVK R G + Q I ++ + + +HAR A Sbjct: 120 GLVSQILESVRKATRKPLTVKIRSGWNLQSINAV---QIARIAEQQGIDAVFVHARTAV- 175 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGRE 235 D+ + ++K + + NG +KS +A + DGVM+GR Sbjct: 176 -------QGFAGSADWRIIEEIKNSV-GIKVIGNGDVKSGADAWRMIKMTGCDGVMIGRG 227 Query: 236 AYQNPGILAAVDREIFG----SSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 A NP I S + ++ L Q + +H+L Sbjct: 228 ALGNPWIFNEALNYQSTVQTHSEPVLNERKEMILRHLERETIFLGQKEAVKRFRKHLLWY 287 Query: 292 FQGIPGARQWRRYLSENAHKAGADINVLEHALK 324 +GI G +R ++ + + +E Sbjct: 288 TKGIRGGASFRSRVTTISDQNLLLRE-IEAFFD 319 >UniRef50_Q2RTX4 Dihydrouridine synthase TIM-barrel protein yjbN n=3 Tax=Bacteria RepID=Q2RTX4_RHORT Length = 349 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 165/334 (49%), Positives = 220/334 (65%), Gaps = 11/334 (3%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG-DYLAYS 60 P+++ R SVAPM+DWTDRH R+FLR +++ TLLYTEM+T A++H +L + Sbjct: 12 PDRSQPD--RRLSVAPMMDWTDRHDRWFLRQITKRTLLYTEMITAQALLHADPGRFLDHH 69 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 +EHP+ALQLGGSDP ALA+ +LA G+ EINLNVGCPSDRV +G FGACLM + LV Sbjct: 70 PDEHPLALQLGGSDPRALAEATRLAAPFGFAEINLNVGCPSDRVSSGRFGACLMADPALV 129 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 A+C+ AM + + PVT+K RIGIDD DSY+ L F++ V+ + I+HARKAWL GL Sbjct: 130 AECLSAMAEASNAPVTIKHRIGIDDLDSYDQLVGFVDQVA-RSGIATIIVHARKAWLKGL 188 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL-------QHMDGVMVG 233 SPKENREIPPL + V++LK DFP L + +NGGI +L +A HL +DGVM+G Sbjct: 189 SPKENREIPPLRHDVVHRLKADFPGLEVILNGGITTLTQALDHLGSGDPAAPAVDGVMIG 248 Query: 234 REAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 R AY+ P +LA D IFG + V A+ PY++ ++G + +TRH+LGLF Sbjct: 249 RAAYETPYMLAQADGLIFGEATPAPSRHEVALALLPYLDAMTARGEPVKRLTRHILGLFH 308 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALKLVA 327 G PGAR +RR+L E + A VL AL + Sbjct: 309 GQPGARAYRRHLGEAGVRPDATAQVLIDALAHIP 342 >UniRef50_A1AW94 TIM-barrel protein, yjbN family n=2 Tax=Gammaproteobacteria RepID=A1AW94_RUTMC Length = 322 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 155/316 (49%), Positives = 214/316 (67%), Gaps = 2/316 (0%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHP 65 +++ +FSVAPM+DWTDRHCRYF RL+S+N L+TEMVT AI++G L ++ EHP Sbjct: 1 MNYHSKFSVAPMMDWTDRHCRYFYRLISKNVQLWTEMVTARAILYGNKNRLLDFNVCEHP 60 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + LQLGGS+P +AQ AK+A+ GY+EIN+NVGCPS+RVQ+ FG CLM Q+VA CV Sbjct: 61 LVLQLGGSEPKEMAQAAKIAQDWGYNEININVGCPSNRVQSSNFGVCLMQTPQVVAQCVD 120 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 AMR +V +P+TVK+RIG+D+ DSY+ L +F+ TV C+ +IHARKAWL GLSPKEN Sbjct: 121 AMRQMVDVPITVKSRIGVDNMDSYDELVNFVATV-ESSGCDNLVIHARKAWLKGLSPKEN 179 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAA 245 R +P L+Y RVYQ+KRDFPHL + INGGI +E + HL+H+D VM+GR Y P +L Sbjct: 180 RSVPKLNYERVYQIKRDFPHLAIGINGGIMDMESSLQHLEHVDSVMLGRAVYHQPYLLRK 239 Query: 246 VDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL 305 VD I+ + V+ A Y++ + + + +TRH+ GL+ G A++++R L Sbjct: 240 VDGLIYQKKSSILSREQVLLAFIEYMKVQHANSVLIRSMTRHIFGLYHGQKNAKKFKRLL 299 Query: 306 SENAHKAGADINVLEH 321 S K LE+ Sbjct: 300 SGKIVKFEHLYEWLEY 315 >UniRef50_B3QWF2 TIM-barrel protein, nifR3 family n=26 Tax=Bacteroidetes/Chlorobi group RepID=B3QWF2_CHLT3 Length = 402 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 79/334 (23%), Positives = 138/334 (41%), Gaps = 27/334 (8%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAY 59 + + +APM D TD R + + +++TE +++ +I L Sbjct: 46 KIGQIEIEKPVILAPMEDVTDPSFRRLCKHYGAD-IVFTEFISSDGLIRHAVKSKRKLDV 104 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 ++E PVA+Q+ G+ + + A++AEA G D I++N GCP+ +V G+ L+ L Sbjct: 105 FDDERPVAIQIFGNQIEPMVEAAQMAEAAGPDFIDINYGCPAKKVAGKGAGSGLLCQPDL 164 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 + A+ V +PVT KTRIG D++ + D + + + IH R Sbjct: 165 MEKITDAVVKAVRLPVTAKTRIGWDERSI--SILDTVRRL-EGCGIQALSIHGRT----- 216 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAY 237 + D+ + + ++ + + NG I + E+AK +DGVM+GR A Sbjct: 217 ---RAQMYKGRADWSWIAR-AKEVATIPIIGNGDIWTAEDAKRMFDETGVDGVMIGRGAI 272 Query: 238 QNPGILAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 NP + I T + VAV + + + RH + Sbjct: 273 GNPFLFREAKHLIQTGEHLPQATHRERVAVAIRHLEMSLERKGEKYGVLEMRRHYSTYLK 332 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALKLVA 327 G+P + R YL D N++ AL+ Sbjct: 333 GLPNVSKVRDYLVREN-----DPNLIVEALRRFE 361 >UniRef50_D1BLD4 TIM-barrel protein, nifR3 family n=12 Tax=cellular organisms RepID=D1BLD4_VEIPT Length = 328 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 87/331 (26%), Positives = 140/331 (42%), Gaps = 23/331 (6%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEE 63 V G+ +APM +D R + L+ TEMV+ I + L + E Sbjct: 11 VKIDGQAILAPMAGVSDIAYRLLAKEHGA-ALVCTEMVSAMGIKYKNERTHELLRIEDVE 69 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 PV++Q+ GS+P A+A AK+ G D +++N+GCP +V G+ LM N L A Sbjct: 70 RPVSMQIFGSNPEAIALGAKVVANAGADIVDINMGCPVKKVVTSGDGSALMKNPDLAARV 129 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 +A + V +PVTVK RIG D + DF + +H R K Sbjct: 130 AEAAVEAVDVPVTVKMRIGWDSDSIN--VVDFAKRI-ESTGVAAIAVHGRT--------K 178 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPG 241 E D+ + +K + + NG I E+AK L D VMVGR A NP Sbjct: 179 EQMYSGHADWSYIKAVKEAVS-VPVLGNGDIVEPEDAKQMLDETGCDAVMVGRGAQGNPW 237 Query: 242 ILAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 I + + TD + + ++ + + + +G + I H +G+P Sbjct: 238 IFGRIHHYLATGEVLPGPTDIERLDMLLKHFDLLCQYKGEGMAVKEIRTHAGWYMKGLPE 297 Query: 298 ARQWRRYLSENAHKAGADINVLEHALKLVAD 328 + WR ++ + N LE K++++ Sbjct: 298 SAYWRNRVNT-IQTVTSFHNELESYRKILSE 327 >UniRef50_C9RM69 TIM-barrel protein, yjbN family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RM69_FIBSS Length = 345 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 173/344 (50%), Positives = 233/344 (67%), Gaps = 20/344 (5%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD--YLAYSEEE 63 ++ ++ R S+APMLD TDRH RYFLRLLS++ LLY+EMV + ++H + +L + E Sbjct: 2 NIDFNRRLSIAPMLDCTDRHERYFLRLLSKHILLYSEMVVSTGLLHCENKDLFLGHEPFE 61 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 HP LQLGGS+PA LA +KL EA G+ E+NLN GCPSDRVQNG FGACLM +VADC Sbjct: 62 HPAVLQLGGSNPADLASASKLVEAAGFSEVNLNCGCPSDRVQNGNFGACLMKEKNVVADC 121 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 KAM+D VSIPV++K RIG+DD DS+EF DFI TV G C++FI+HARKAWL GLSPK Sbjct: 122 FKAMQDAVSIPVSIKCRIGVDDLDSWEFFTDFIQTVRDAG-CKIFIVHARKAWLKGLSPK 180 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGIL 243 ENRE+PPL Y V++LK + P L +SINGGIK+L++ + L+ +DGVMVGREAY+NP L Sbjct: 181 ENREVPPLHYEFVHRLKAEMPELNLSINGGIKTLDQIEEQLKDLDGVMVGREAYENPWFL 240 Query: 244 AAVDREIFG--------------SSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHML 289 D IFG + A A++ A PY+E++ ++G + +H+ Sbjct: 241 HDADARIFGDVRPESNDPAEIIAGNARPATRKALLEAYLPYVEKQTAEGCPATILVKHLY 300 Query: 290 GLFQGIPGARQWRRYLSENAHKA---GADINVLEHALKLVADKR 330 GLF G+PGAR++R LS + +A G ++ A++LV + R Sbjct: 301 GLFAGLPGARKFRATLSNESPRAHLYGGAAALIRKAMELVGETR 344 >UniRef50_Q22A31 TIM-barrel protein, yjbN family n=2 Tax=cellular organisms RepID=Q22A31_TETTH Length = 466 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 137/336 (40%), Positives = 209/336 (62%), Gaps = 15/336 (4%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYS 60 ++++ +VAPM+D TD H R F+RLL+R ++LYTEM+ A+ H G ++L + Sbjct: 82 IANINYHT-IAVAPMIDITDVHFRNFIRLLTRYSILYTEMIHEQAVHHNIRGPQEFLRFD 140 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 +HPV +QLGG+DP LA+ AK+ E GYDE+NLNVGCPSDRVQ+G FGACLM +LV Sbjct: 141 PVQHPVVIQLGGNDPDNLAKAAKICEEIGYDEVNLNVGCPSDRVQSGKFGACLMKEPELV 200 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 A+ ++ M++ SIPVTVK R+G+D+ DSYEF DFI TVS KG+ + F++HARKA+L GL Sbjct: 201 AEIMRKMKEACSIPVTVKCRLGVDNFDSYEFARDFIKTVSEKGQVQHFVVHARKAFLKGL 260 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL---QHMDGVMVGREAY 237 +P +NR +PPL Y V +LK++FPHL SINGG K+ ++ L + G M+GR AY Sbjct: 261 NPAQNRNVPPLKYDYVLRLKQEFPHLHFSINGGFKTYDQISDILKQENGLHGCMLGRAAY 320 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGH--ITRHMLGLFQGI 295 + P + + +DR FG + +++ Y + + Q + + + ++ LF G Sbjct: 321 ETPWLFSDMDRRYFGKQNPGFSRREILQIWGQYGKLVIQQQPAISIPTLNKPIINLFAGE 380 Query: 296 PGARQWRRYLSENA------HKAGADINVLEHALKL 325 + ++R ++S+ A + +E ++ Sbjct: 381 KHSAKYRHFISDRANFVKFENYEVFMQKTIEEYEQI 416 >UniRef50_C4Z9L8 tRNA-dihydrouridine synthase n=26 Tax=Firmicutes RepID=C4Z9L8_EUBR3 Length = 323 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 74/314 (23%), Positives = 126/314 (40%), Gaps = 22/314 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAY 59 + V + PM TD R + LL EMV+ AI++ + L+ Sbjct: 10 QIGSVTLPNNLILGPMAGVTDLPFRLLCKEQGA-GLLCMEMVSAKAILYKNKNTESLLSI 68 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 E E PV+LQ+ GSDP +AQ AK E R +D +++N+GCP ++ N G+ LM N L Sbjct: 69 DEREKPVSLQMFGSDPQIMAQIAKQIEERPFDILDINMGCPVPKIVNNGEGSALMKNPLL 128 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 ++++ + PVTVK R G DD+ V+ + +H R Sbjct: 129 AGQIIESIVKAIDKPVTVKIRKGFDDEHVNAVEL---AHVAEESGASAVAVHGRT----- 180 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAY 237 +E D+ + Q+K + + NG + S E+ + DG M+ R A Sbjct: 181 ---REQYYSGKADWDIIRQVKEAVS-IPVIGNGDLLSAEDVIKMQEQTGCDGFMIARGAQ 236 Query: 238 QNPGILAAVDREIFGSSDTDADPVA----VVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 NP I + + + ++ + + T + + +H Sbjct: 237 GNPWIFSQILHYFETGEHQEKPSFEEVRRMILRHARMMIEFKGEYTGIHEMRKHTAWYTA 296 Query: 294 GIPGARQWRRYLSE 307 G P + + R ++ Sbjct: 297 GYPHSSRLRAAVNT 310 >UniRef50_A5WG83 TIM-barrel protein, yjbN family n=2 Tax=Moraxellaceae RepID=A5WG83_PSYWF Length = 348 Score = 303 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 165/329 (50%), Positives = 219/329 (66%), Gaps = 13/329 (3%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL-AYSE 61 D+ + R SVAPM+DWT R+F RL + +T LYTEM++T AI+ GK D L Y Sbjct: 13 HSADLMHNKRLSVAPMIDWTTTDYRFFARLFNPHTYLYTEMISTSAILQGKTDRLLRYDT 72 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 EHP+ LQLGG+D + + QCA A+ RG++E+N+NVGCPSDRVQ+ GACLM VA Sbjct: 73 LEHPLVLQLGGADISEMTQCAVEAQKRGFNEVNINVGCPSDRVQHNKIGACLMAEPDTVA 132 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 V+ M+ V IPVTVK RIGID+ DSYEF+ DF++ + G C+ FI+HAR AWL+GLS Sbjct: 133 ALVRNMQAHVDIPVTVKHRIGIDEHDSYEFMQDFVSASAEAG-CQRFIVHARIAWLNGLS 191 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPG 241 PKENREIPPL Y VY+LK+ FP L + INGGI S+E+ KAHLQ +DGVM+GR AY NP Sbjct: 192 PKENREIPPLRYEDVYRLKQAFPELHIEINGGIDSIEQIKAHLQQVDGVMIGRAAYHNPY 251 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 ILA + ++ +YPY+E+++++G L + RH LGLFQG+PGAR+W Sbjct: 252 ILAEAMSFWG---EAAPSRAQILTKLYPYLEQQVAKGEPLPSLARHFLGLFQGLPGARKW 308 Query: 302 RRYLS--------ENAHKAGADINVLEHA 322 R+ LS + A A + ++E A Sbjct: 309 RQALSGKQQMSVDDIRRAADATLAIIERA 337 >UniRef50_C8W3U6 TIM-barrel protein, nifR3 family n=8 Tax=Clostridia RepID=C8W3U6_DESAS Length = 322 Score = 302 bits (775), Expect = 8e-81, Method: Composition-based stats. Identities = 71/332 (21%), Positives = 134/332 (40%), Gaps = 23/332 (6%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---L 57 M +V R APM TDR R + L+ TEM++ A+++G L Sbjct: 1 MLRIGNVTIKNRVISAPMAGITDRAYRILAKEAGC-GLVCTEMISDQALLYGNPKTNILL 59 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 + E P+++Q+ GS P +A+ A + EARG I++N+GCP+ ++ GA LM Sbjct: 60 DCTGETPPISMQIFGSSPEYMARAASITEARGASIIDINMGCPTPKIVKNGEGAALMRKP 119 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 +L + + V +PVTVK R G D+ ++ + + +H R Sbjct: 120 ELAQKIISDVVQSVRVPVTVKIRKGWDESFPNAVEMAL---LAEEAGAKAVTVHGRT--- 173 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGRE 235 + D+ + +K+ + + NG I+ +A L D VM+GR Sbjct: 174 -----RSQFYSGKADWDIIKSVKKAVT-IPVIGNGDIREPRDAVRMLMHTGCDAVMIGRA 227 Query: 236 AYQNPGILAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 + NP I ++ + + ++V + + + + +H Sbjct: 228 SLGNPWIFSSTVHFLDCGENLPAPSPRQRLSVALRHLELLIELKGEYIAIREMRKHAAWY 287 Query: 292 FQGIPGARQWRRYLSENAHKAGADINVLEHAL 323 +G+ A + R ++ + +L + + Sbjct: 288 TRGLREANRIREKINRAVSLSEIR-ELLNYFI 318 >UniRef50_A9KHE5 TIM-barrel protein, nifR3 family n=2 Tax=Clostridiales RepID=A9KHE5_CLOPH Length = 324 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 74/333 (22%), Positives = 133/333 (39%), Gaps = 24/333 (7%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYS 60 +V+ +G + PM TD R + + L+YTEMV+ I + + L Sbjct: 5 IGNVNINGNLVLGPMAGVTDLPFRLLCKEQGAD-LIYTEMVSAKGIYYNNKNTEVLLEVE 63 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E+E PVALQL G DP +++ AK E R +D +++N+GCP +V N G+ LM + + Sbjct: 64 EKERPVALQLFGEDPYIMSEMAKRIEHRNFDFLDINMGCPVPKVVNNGEGSALMLKPERI 123 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 + V A+ + PVTVK R G + + V + +H R Sbjct: 124 GEIVSAISKAIKKPVTVKIRKGFTKDNINAVE---VAKVIEQSGGAAIAVHGRT------ 174 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQ 238 +E D+ + +K + + NG +++ E+ K + D VM+ R Sbjct: 175 --REQYYSGEADWDIIKAVKEAVS-IPVIGNGDVQTPEDVKRMMSYTGCDAVMIARGVRG 231 Query: 239 NPGILAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 NP + + + + + ++ + T + + +H+ G Sbjct: 232 NPWFFSQAKHYLNTGEILAKPSVPEVIEMILRHGRLAIEVKGEFTAMHEMRKHVAWYTMG 291 Query: 295 IPGARQWRRYLSENAHKAG--ADINVLEHALKL 325 P + + R ++E + E L L Sbjct: 292 YPKSAKLRNQVNEIETYEDLIVLMKKYEEMLDL 324 >UniRef50_Q3A324 Dihydrouridine synthase n=10 Tax=Desulfuromonadales RepID=Q3A324_PELCD Length = 342 Score = 301 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 82/330 (24%), Positives = 135/330 (40%), Gaps = 25/330 (7%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYS 60 +H +APM TD CR +R L +TEM++ ++ G D LA + Sbjct: 22 IKSLHIKHNILLAPMAGITDLACRLLMRPYG-IGLAFTEMISANGLVLGGDATRDLLAST 80 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 + P+ +QL G +P L+Q K E+ G D I+LN+GCP +V G+ LM V Sbjct: 81 PSDRPLGIQLFGENPKYLSQACKQVESHG-DLIDLNIGCPVKKVVRSGAGSALMQTPARV 139 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 A + AMR +P+TVK R G D I ++ + + +H R Sbjct: 140 AQIIAAMRRATHLPLTVKIRAGWDASHINFLE---IAHIAEQEGVDAITLHPRT------ 190 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQ 238 + ++ + +LKR + + +G I + A+ L D VM+GR Y Sbjct: 191 --RSQGFSGSANWDLIAELKRR-STIPVIGSGDIFEAQYAQRMLQQTGCDAVMIGRGCYG 247 Query: 239 NPGILAAVDREIFGS---SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 NP + + G T + V R + + + +H+ +G+ Sbjct: 248 NPWLARDILAMRQGQTPAPVTPEERCDVALRHMELFLRFNDERKAVFDLRKHLCWYAKGL 307 Query: 296 PGARQWRRYLSENAHKAGAD---INVLEHA 322 PGA Q+R ++ ++ EHA Sbjct: 308 PGAAQFRSSINRAMSIEEMRTLVMHFFEHA 337 >UniRef50_B6BT49 tRNA-dihydrouridine synthase A n=4 Tax=SAR11 cluster RepID=B6BT49_9RICK Length = 334 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 153/325 (47%), Positives = 218/325 (67%), Gaps = 3/325 (0%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEE 63 T+ S + SVAPM+D TDRH R+FLRL+S+N +LY+EMV T + IHG + L+YS EE Sbjct: 3 TNNKISRKISVAPMMDCTDRHDRFFLRLMSKNVMLYSEMVATKSAIHGDRKKILSYSPEE 62 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P+ALQ+GGS+ LA+ AK+AE GYDEIN+N+GCPS +VQ MFGACLM LVA+C Sbjct: 63 KPLALQVGGSNKDELAEVAKIAEDMGYDEININLGCPSKKVQKNMFGACLMKEPDLVAEC 122 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + +M + +IPVT KTRIG D + +++L +FI+ + G + FI+HARKA L+GLSPK Sbjct: 123 INSMVNSCNIPVTAKTRIGFDQTEDFDYLNNFIHKMRDAGT-KTFILHARKAMLTGLSPK 181 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGIL 243 +N IP L+Y VY++K+ P L + INGGI + E HL+ DGVM+GR YQNP L Sbjct: 182 QNLNIPKLNYNMVYEIKKKNPELEIIINGGISKVSEIDNHLKFCDGVMIGRSIYQNPYSL 241 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 ++R+IF + + + VV + Y ++E+ GT + HI RH +GL+ G G++ W+R Sbjct: 242 IEIERDIFNTHN-NPTREQVVEKLLEYADKEVKLGTKINHIMRHTVGLYHGQTGSKDWKR 300 Query: 304 YLSENAHKAGADINVLEHALKLVAD 328 YLS+N +D +H + +V + Sbjct: 301 YLSDNLMARESDFQKTKHIMTIVQN 325 >UniRef50_C0GJW0 TIM-barrel protein, nifR3 family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJW0_9FIRM Length = 319 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 69/329 (20%), Positives = 126/329 (38%), Gaps = 23/329 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 + + + +AP+ TD R R + L++TEM++ + L + Sbjct: 2 QIGSLALQNKVILAPLAGVTDSSFRILAREMGC-ALVFTEMISAKGAVCAPEQTLKIARF 60 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 + +E P+ +QL GSDP A+ +L + D +++N+GCP +V G LM + Sbjct: 61 TAQERPIGIQLFGSDPEIFARATELCNGQAPDLLDINMGCPVKKVAGKGEGCALMRDPDK 120 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 KA+ D ++PVTVK R G DD + + +H R Sbjct: 121 AYAITKAVCDAATMPVTVKMRKGWDDSEVNAVEVALAVQ---EAGAAAVTVHGRT----- 172 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAY 237 + D+ + ++K + + NG I ++A+ L D VM+ R Sbjct: 173 ---RAQGYSGRADWSVIARVKEAL-RVPVVGNGDIWEPQDAQRMLQQTGCDAVMLARGVL 228 Query: 238 QNPGILAAVDREIFGSS-DTDADPVAVVR---AMYPYIERELSQGTYLGHITRHMLGLFQ 293 N ++ + + + VR + E + + + +HM + Sbjct: 229 GNLWLIRRTVHYLETGELLPEPEMAERVRLACRHLKMVVDEKGEYMGVREMRKHMAWYLK 288 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHA 322 G+ GA Q R + K +LE+ Sbjct: 289 GMRGAAQVRNEIMRAKTKEEMT-AILENL 316 >UniRef50_C7PIH0 TIM-barrel protein, nifR3 family n=7 Tax=Bacteroidetes RepID=C7PIH0_CHIPD Length = 354 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 75/339 (22%), Positives = 142/339 (41%), Gaps = 30/339 (8%) Query: 1 MPEKTDVHWSG-RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDY 56 M + ++ +APM D +D R + + L+YTE +++ +I Sbjct: 1 MVKIGNITLGNFPLLLAPMEDVSDPPFRAVCKEKGAD-LMYTEFISSEGLIRDAIKSRRK 59 Query: 57 LAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 L + E PV +Q+ G D +A A++ EA D +++N GCP +V G+ ++ + Sbjct: 60 LDIFDYERPVGIQIFGGDEEPMAMAAQIVEATNPDLLDINYGCPVKKVVCKGAGSGILKD 119 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGIDDQ-DSYEFLCDFINTVSGKGECEMFIIHARKA 175 + A+ +PVTVKTR+G DD + E + + + V + IH R Sbjct: 120 IPKMVKLTAAVVKATKLPVTVKTRLGWDDDTKNIEEVAERLQDV----GIQALTIHGRT- 174 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFP-HLTMSINGGIKSLEEAKAHLQ--HMDGVMV 232 + D+ + ++K + H+ + NG I + E+A A + +DGVM+ Sbjct: 175 -------RTQMYKGHADWTLIGKVKNNPRIHIPIFGNGDICTPEQAIAAREKYGVDGVMI 227 Query: 233 GREAYQNPGILAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHM 288 GR A P I + + + + V V + + + + + RH Sbjct: 228 GRAAIGYPWIFNEIKHFMQTGEHLPPPSVLERVEVCKKHLQHSVQWKGDVVGILEMRRHY 287 Query: 289 LGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVA 327 +G+P +++R+ L + + +E L +A Sbjct: 288 TNYLKGLPHIKEFRQQLVTCST-----LAAVEDVLDAIA 321 >UniRef50_B8FGI4 TIM-barrel protein, nifR3 family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGI4_DESAA Length = 332 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 70/338 (20%), Positives = 139/338 (41%), Gaps = 22/338 (6%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYL 57 M + + AP+ T+ R + L+ +EM+++ +I + + Sbjct: 1 MLKIASLKLDNPLVCAPLAGVTNLPLRLMAKRHGA-ALVCSEMISSNGLIRYQKKTMELM 59 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 A EEE P+++Q+ GSDP LA A++ G D +++N GC +V G G+ LM + Sbjct: 60 ASKEEERPLSIQIFGSDPGVLADSARIVAEHGADIVDINFGCSVKKVLKGGAGSALMADL 119 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 +K +R +S+P T+K R G D ++ + +H R A Sbjct: 120 PRAEKILKEVRKAISLPFTIKMRSGWDASGDEAMAL---GRIAQDAGVDAVALHPRTA-- 174 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGRE 235 + D+ ++ +LK++ + + NG + E ++ DGVM+GR Sbjct: 175 ------KQGFSGHSDWSQIKRLKQELT-IPVIGNGDVTKPEHVLEMMEQTGCDGVMIGRA 227 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIE---RELSQGTYLGHITRHMLGLF 292 P I + + D + ++ Y++ L + + + Sbjct: 228 VLYAPWIFRQALCLLENRPMEEIDLDDRKKVLFDYLDDTMDYLGEEHGCRVMRSRLAWFV 287 Query: 293 QGIPGARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 +G+P A ++R ++ A K A +++E + + +R Sbjct: 288 KGLPNAAKFRGEITRIASKEQAR-DLIEEFFRSIEKRR 324 >UniRef50_Q090Q9 TRNA-dihydrouridine synthase B n=2 Tax=Cystobacterineae RepID=Q090Q9_STIAU Length = 369 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 83/329 (25%), Positives = 131/329 (39%), Gaps = 22/329 (6%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY- 59 M + + +APM ++R R L TE+V+ ++ L Y Sbjct: 33 MLQIGPYSLPNPYILAPMAGVSERPFRVIAFKWGA-ALCPTELVSAQGLMRANQRTLKYL 91 Query: 60 ---SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 E E P +LQ+ G +P A+AQ A + +A G I++N+GCP +V G+ LM Sbjct: 92 RFSPEVERPYSLQIFGGEPEAMAQAALVGKAHGAQIIDINMGCPVKKVTKNGAGSALMCE 151 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 A V+A+ + +PVT K R G D + G C IH R Sbjct: 152 PLRAARIVQAIAEATGLPVTCKIRSGWDAHHRNY--LQMAGELFSAG-CAALAIHPRT-- 206 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGR 234 ++ D+ + LKR FP T+ NG +K+ +A+ + D VM+GR Sbjct: 207 ------RDQGYSGFADWSVIADLKRHFPDRTLIGNGDVKTPADARRMRETTGCDFVMIGR 260 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVA-VVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 A NP I + G T + A V+ ++E + RHM Sbjct: 261 GALGNPWIFRELAG---GPPPTPEERCAGVLEHFRAHVEFVGEPLGAVRSFRRHMAWYAH 317 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHA 322 G+ GA +R ++ A + V+ Sbjct: 318 GLHGAAAFRAEVNTLETPASVEDAVVRFF 346 >UniRef50_P37567 Probable tRNA-dihydrouridine synthase 1 n=19 Tax=Bacilli RepID=DUS1_BACSU Length = 333 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 68/332 (20%), Positives = 135/332 (40%), Gaps = 24/332 (7%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YL 57 M + D+ R +APM + R ++ L+ EMV+ AI++ L Sbjct: 1 MFKIGDIQLKNRVVLAPMAGVCNSAFRLTVKEFGA-GLVCAEMVSDKAILYNNARTMGML 59 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 E E P++LQ+ G L + AK + D I++N+GCP ++ GA + + Sbjct: 60 YIDEREKPLSLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLD 119 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 + + V A+ D V+ PVTVK R+G D+ + + + +H R Sbjct: 120 PDKIYEMVSAVVDAVNKPVTVKMRMGWDEDHIFAV---KNAQAVERAGGKAVALHGRT-- 174 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGR 234 + ++ + ++K+ + + NG +K+ ++AK L +DGVM+GR Sbjct: 175 ------RVQMYEGTANWDIIKEVKQSVS-IPVIGNGDVKTPQDAKRMLDETGVDGVMIGR 227 Query: 235 EAYQNPGILAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLG 290 A NP ++ + + + +AV + + + + + +H Sbjct: 228 AALGNPWMIYRTVQYLETGKLKEEPQVREKMAVCKLHLDRLIDLKGENVAVREMRKHAAW 287 Query: 291 LFQGIPGARQWRRYLSENAHKAGADINVLEHA 322 +G+ G R ++ + + +L+ Sbjct: 288 YLKGVKGNANVRNEINHCETREEF-VQLLDAF 318 >UniRef50_Q1RH84 Probable tRNA-dihydrouridine synthase n=59 Tax=Alphaproteobacteria RepID=DUS_RICBR Length = 326 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 81/339 (23%), Positives = 142/339 (41%), Gaps = 23/339 (6%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS 60 M + ++ S +APM TD R ++ L+ +EM+ + A+I L Sbjct: 1 MIKIGNIELSSNIILAPMSGVTDLEFRRLVKRFGA-GLVVSEMIASRAMIVESRQSLQKC 59 Query: 61 ----EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 ++ +QL G +P +A+ AK+ E G I+LN GCP+ +V NG G+ LM + Sbjct: 60 SIMQDDATSACVQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVNGYSGSALMRD 119 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 L A +A V IPVTVK R+G DDQ ++ + +M +H R Sbjct: 120 EGLAAKIFEAAVKAVKIPVTVKMRMGWDDQTKNAPTL---AKIAERSGIQMVTVHGRT-- 174 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGR 234 + D+ + +K + + NG I + +AK L+ DGVMVGR Sbjct: 175 ------RCQFYSGNADWEFIKNVKEAV-KIPVIANGDITNFAKAKEALEKSSADGVMVGR 227 Query: 235 EAYQNPGILAAVDREIFGSSDTD----ADPVAVVRAMYPYIERELSQGTYLGHITRHMLG 290 AY P +++ +D + + + +V Y I + + +HM Sbjct: 228 GAYGKPWLISQIDHYLKTGEEKPAPSIESQLDIVLEHYQAIVDYYGESAGVPIARKHMGW 287 Query: 291 LFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVADK 329 G+P + ++R ++ ++E ++ + Sbjct: 288 YSSGLPNSAEFRGAVNLMNDPIAVKDKIVEFYTSVINRE 326 >UniRef50_Q5ZVH8 Zinc binding TIM barrel protein, YjbN family n=6 Tax=Legionella RepID=Q5ZVH8_LEGPH Length = 334 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 141/319 (44%), Positives = 209/319 (65%), Gaps = 10/319 (3%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLG 71 + S+APM+DWT+ R +RLL+ N LLYTEM TTGA+ + L ++ EHP+A+QLG Sbjct: 12 KLSIAPMIDWTNSPFRTLMRLLAPNALLYTEMQTTGAVQNNPDRALYFNSVEHPLAIQLG 71 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G+D +AL +CA +AE +G++EINLN+GCPSD+VQ G FGACLM + VADC++A++ VV Sbjct: 72 GADKSALVKCAIIAEQKGFNEINLNLGCPSDKVQAGRFGACLMKEPEHVADCIRAIKQVV 131 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 IPVT KTRIGID+QDSYEF F + G C+ IIHARKAWL+GL+PK+NR IPP+ Sbjct: 132 GIPVTAKTRIGIDNQDSYEFFRSFSLHLVEAG-CDKLIIHARKAWLNGLNPKQNRTIPPV 190 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF 251 +Y VY+LK++ PH+ ++ING I ++EE HL+H+DGVM+GR A NP +A + + ++ Sbjct: 191 NYDYVYELKKEIPHIFITINGNILTVEEINNHLKHVDGVMLGRLACDNPYQIAEIHQALY 250 Query: 252 GSSDTDADPVAVVRAMYPYIERELSQGTY---LGHITRHMLGLFQGIPGARQWRRYLSEN 308 + + + + Y++ Q L + + + L G+PGA+ W++ L Sbjct: 251 ----PEFIKIKRSQLLMNYLDYWFDQSRANLSLSILVKPLFNLAFGLPGAKHWKKKLMNI 306 Query: 309 AHKAGA--DINVLEHALKL 325 + ++++ L L Sbjct: 307 IQEKNTSGFSELIQYLLNL 325 >UniRef50_Q04VP3 TRNA-dihydrouridine synthase n=4 Tax=Leptospira RepID=Q04VP3_LEPBJ Length = 339 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 160/332 (48%), Positives = 210/332 (63%), Gaps = 6/332 (1%) Query: 1 MPEKT-DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLA 58 M EK + S+APM+D TDRH RYFLRL+S++T LYTEM+ TGAI+HG + +L+ Sbjct: 1 MSEKGIKIPKRYPVSLAPMMDRTDRHFRYFLRLISKHTFLYTEMIHTGAILHGDRRRFLS 60 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 YS EE P+A+QLGG +P ALA+ +K+ E GY EINLNVGCPSDRV+ G FGACLM + Sbjct: 61 YSPEELPLAIQLGGDNPKALAESSKIGEDYGYSEINLNVGCPSDRVREGNFGACLMETPE 120 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 VA+ V AM VSIPVTVK RIGI +++ E LC FI V G FI+HAR A L Sbjct: 121 RVAELVCAMDGNVSIPVTVKCRIGISGKETLEDLCRFIECVRQAG-VRRFIVHARIAILG 179 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQ 238 GLSP +NR+IPPL Y V LK++FP L + INGGI++L E + L+ DGVM+GR AY+ Sbjct: 180 GLSPAQNRQIPPLRYAHVESLKKEFPDLLIEINGGIRTLAEMQDRLKTNDGVMIGRAAYE 239 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERE--LSQGTYLGHITRHMLGLFQGIP 296 P + + VD F + V+ M YIE + H RHMLGLF G Sbjct: 240 TPYLFSEVDSLFFHDNSPSLSRREVLLRMRDYIEEVVLKEKNGKPHHALRHMLGLFHGEK 299 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVAD 328 GAR +RR ++E + ++L A++ + + Sbjct: 300 GARSFRRVVTERMYY-DYSSDLLLDAIQEIPN 330 >UniRef50_C1FNC8 Dihydrouridine synthase n=35 Tax=cellular organisms RepID=C1FNC8_CLOBJ Length = 323 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 70/327 (21%), Positives = 136/327 (41%), Gaps = 22/327 (6%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYS 60 ++ + +APM +TD R + L L+YTEMV+ A+ + + S Sbjct: 3 IGNLIFHNNVFLAPMAGFTDIAFREICKELGC-GLVYTEMVSAKALYYESNNTKELCVIS 61 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 +E PVALQL G +P +A + +++N+GCP+ ++ G+ LM + +L Sbjct: 62 NKEKPVALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPKL 121 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 ++ +KAM+ V P+TVK R G D + + + + IH R Sbjct: 122 ASEIIKAMKKVAKKPITVKFRKGFDKNNINAVE---FAKIMEQSGVDAITIHGRT----- 173 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAY 237 +E D+ + ++K + + NG + S E+A + DG+M+GR A Sbjct: 174 ---REQMYEGKADWAIISKVKNSVS-IPVIGNGDVFSSEDALEMINKTDCDGIMIGRGAQ 229 Query: 238 QNPGILAAVDREIFGSS---DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 NP I ++ +I G T + + + Y + + + +H+ +G Sbjct: 230 GNPWIFKQINEKIKGEHVYYPTPQERIDICINHYKKSLEYFEEHKAVREMRKHVAVYVKG 289 Query: 295 IPGARQWRRYLSENAHKAGADINVLEH 321 + + ++ ++++ Sbjct: 290 LKNCTDIKDKVNMEKDPDKVLEELIKY 316 >UniRef50_A0EAZ6 Chromosome undetermined scaffold_87, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0EAZ6_PARTE Length = 346 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 139/327 (42%), Positives = 207/327 (63%), Gaps = 11/327 (3%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI-----IHGKGDYLAYSEEE 63 + + S+APM+D T H R F RLL++N +LYTEM+ AI + L YS+ E Sbjct: 5 FRHKISIAPMIDITYEHFRVFFRLLTKNCVLYTEMIHENAINLSRVLKPFPLVLDYSQVE 64 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 HPV QLGG+DP LA+ A++AE G+DEINLNVGCPS+RVQ+G FGACLM LVA C Sbjct: 65 HPVVCQLGGNDPEKLAKAAQIAEQAGFDEINLNVGCPSERVQDGAFGACLMKEPHLVAQC 124 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 +K M++ V IP T+K R+G+D+ DSYEF+ +F+ V +GE FI+HARKA+L GL+P Sbjct: 125 MKKMKEAVKIPCTLKCRLGVDNLDSYEFVRNFVEIVYKEGEVNHFIMHARKAFLKGLNPH 184 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGIL 243 ENR +PPL Y VYQLK++FP + ++NGGIK E L ++DG+M+GR A++NP + Sbjct: 185 ENRTVPPLKYDWVYQLKKEFPEIKFTLNGGIKCTEHIDQVLPNVDGIMIGRSAHENPWMF 244 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLG--HITRHMLGLFQGIPGARQW 301 + DR +G + + + ++ ++E + + G + + ++ LF G +++ Sbjct: 245 SDFDRLYYGGENQNYNRKEILEQYAEFVEEKRATGCKVSTQMCVKPIINLFNGESNNKRY 304 Query: 302 RRYL-SENAHKAGA---DINVLEHALK 324 R++L + + HK G V+EH + Sbjct: 305 RQFLSNTDNHKLGFRGMINQVIEHMHE 331 >UniRef50_B7GFK6 tRNA-dihydrouridine synthase n=211 Tax=Bacteria RepID=B7GFK6_ANOFW Length = 351 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 138/337 (40%), Gaps = 24/337 (7%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YL 57 M + +V + +APM + R ++ L+ EMV+ AI+ L Sbjct: 19 MFKIGNVQINNPVVLAPMAGVCNSAFRLTVKEFGA-GLVCAEMVSDKAILFNNPKTMGML 77 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGN 116 E E P++LQ+ G + L Q AK + D I++N+GCP ++ GA + + Sbjct: 78 YIDEREKPLSLQIFGGEKETLVQAAKYVDQHTNADIIDINMGCPVPKITKCDAGAKWLLD 137 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 + D V A+ D V PVTVK RIG D+ Y + + +H R Sbjct: 138 PNKIYDMVAAVVDAVEKPVTVKMRIGWDENHIYAVE---NAQAVERAGGQAVAVHGRT-- 192 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGR 234 + D+ + Q+K + + NG +++ ++AK L+ +DGVM+GR Sbjct: 193 ------RVQMYEGKADWNVIKQVKEAV-RIPVIGNGDVQTPQDAKRMLEQTGVDGVMIGR 245 Query: 235 EAYQNPGILAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLG 290 A NP ++ R + + + + V + ++ + + +H Sbjct: 246 AALGNPWMIYRTVRYLETGELIPEPSVREKIEVCILHLDRLIALKNEYIAVKEMRKHAAW 305 Query: 291 LFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVA 327 +GI G + R ++E + + +L ++ V Sbjct: 306 YLKGIRGNAKVRNAINECQTR-DELVTLLMSFVEEVE 341 >UniRef50_A5GPV9 TRNA-dihydrouridine synthase A n=25 Tax=cellular organisms RepID=A5GPV9_SYNR3 Length = 335 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 167/320 (52%), Positives = 216/320 (67%), Gaps = 3/320 (0%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL-AYSEEEHPVALQL 70 RFSVAPM+D+TDRH R +R +SR+ LLYTEMV A+ HG+ D L + E P+ALQL Sbjct: 15 RFSVAPMMDYTDRHFRVVMRQVSRHALLYTEMVVAQALHHGRQDTLLGFDPLEKPIALQL 74 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG DPA LA+ A+LAE GYDEINLNVGCPS +V+ G FGACLM Q VA CV+AM Sbjct: 75 GGDDPALLAEAAELAERWGYDEINLNVGCPSPKVKKGRFGACLMAEPQQVARCVEAMGAA 134 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 +PVTVK RIGID++DSY+ L DF++TV+ G C+ F +HARKAWL GL PK+NR +PP Sbjct: 135 CRLPVTVKHRIGIDERDSYDELLDFVDTVAAAG-CQRFAVHARKAWLEGLDPKQNRTVPP 193 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L Y V+ LKRD P L + +NGG++SL + L +DGVMVGR AY +P VD+EI Sbjct: 194 LRYDLVHALKRDRPALIVELNGGLESLSACQEQLHAVDGVMVGRAAYAHPLQWNRVDQEI 253 Query: 251 FGSSD-TDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENA 309 FG S+ T V++ + P+ E S G L I RH++ L +G+ GAR WRR LS A Sbjct: 254 FGDSNATPIKASEVLQGVLPHAEHWCSSGGRLWPIARHLVHLVEGVSGARYWRRQLSVEA 313 Query: 310 HKAGADINVLEHALKLVADK 329 A +VLE A++ + ++ Sbjct: 314 SDRSARPDVLERAMRQLQER 333 >UniRef50_B0TBQ2 Dihydrouridine synthase tim-barrel nifr3 family protein n=3 Tax=Clostridiales RepID=B0TBQ2_HELMI Length = 331 Score = 292 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 74/320 (23%), Positives = 132/320 (41%), Gaps = 22/320 (6%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEEHPVA 67 APM TD+ R L+ R L+YTEM++ A+ + + L + E P+A Sbjct: 18 PPVVAAPMAGVTDKPFRTVLKEH-RCPLVYTEMISDKALTYANRNTMEILDITGEARPIA 76 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +Q+ GS+PA +A+ A++ EA G I++N+GCP+ ++ GACL+ L D +A+ Sbjct: 77 VQIFGSEPAVMAEAARIVEAAGASIIDINMGCPAPKIVRNGEGACLLKTPDLAVDIAEAV 136 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 V +PVTVK RIG + + + +H R +E Sbjct: 137 VRAVQVPVTVKMRIGWSSGRIVA--PELAPRL-EAVGVQALTVHGRT--------REMFY 185 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAA 245 D+ + + R + + NG + ++A L VM+GR NP I + Sbjct: 186 SGQADWSVIAETVRQVS-IPVIGNGDVWEPDDALRMLVETGCAAVMIGRGCMGNPWIFSR 244 Query: 246 VDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 + + + + +I + + + H+ +GI GA + Sbjct: 245 LVHWAETGEMPPPPSPEERINQALLHLEHIVALKGEERGVREMRGHLSWYLKGIRGASRL 304 Query: 302 RRYLSENAHKAGADINVLEH 321 R +++ + + EH Sbjct: 305 RAEINQAPDRESVVRLLTEH 324 >UniRef50_B9MMW4 TIM-barrel protein, nifR3 family n=3 Tax=Clostridia RepID=B9MMW4_ANATD Length = 328 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 75/333 (22%), Positives = 137/333 (41%), Gaps = 24/333 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEE 63 + G+ +APM +TD+ R + + TEM+++ A++ G +++SEEE Sbjct: 2 LDIKGKIFLAPMAGFTDKVFRRLCSRFGAD-VTVTEMISSKALVLGSAKTKDLISFSEEE 60 Query: 64 HPVALQLGGSDPAALAQCAKLAE-ARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 +Q+ G+DP +AQ K+ + Y I++N+GCP ++ G LM N L A Sbjct: 61 KIRGVQIFGNDPEVMAQSVKILQDEFEYHFIDINMGCPVPKLVRSGEGCALMKNPSLAAK 120 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 V+ + V PV+VK R G DD++ + + + +H R Sbjct: 121 IVEEVAKVSRKPVSVKIRKGFDDENINAPEFAY---ILQESGASFVTVHGRT-------- 169 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNP 240 + D+ + ++K + + NG I E AK + D +M+GR A NP Sbjct: 170 RAQLYSGKADWEIIRKVKEKL-KIPVIANGDIVDFESAKKAYEVTRADSIMIGRAALGNP 228 Query: 241 GILAAVDREIF-GSSDTDADPVAVVRAMYPY---IERELSQGTYLGHITRHMLGLFQGIP 296 + + G +T P +R + + E + +H+ +GI Sbjct: 229 WVFLQIKEGFEKGYVETKVLPHMKIRVAIEFFTQLCSEKGDKMAVLEARKHLSFFVKGIE 288 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVADK 329 A + R ++ + A + L+ + K Sbjct: 289 NAAKIRDKINR-INNATELLEFLKELASSLEKK 320 >UniRef50_A8PLS2 tRNA-dihydrouridine synthase A n=1 Tax=Rickettsiella grylli RepID=A8PLS2_9COXI Length = 330 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 154/331 (46%), Positives = 209/331 (63%), Gaps = 7/331 (2%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH--GKGDYLAY 59 P+K H VAPML WT RH YF RL+ + LYTEM T AI+ + L Sbjct: 4 PQKKHAHS---LMVAPMLGWTTRHYHYFFRLICKKAQLYTEMFTAQAILKSPARERLLTV 60 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 E +A+QLGG + L++ AK+ E+ GY EINLNVGCPS++VQ+G FG L+ Sbjct: 61 DANEKALAIQLGGGIASDLSKAAKIVESYGYSEINLNVGCPSEKVQSGGFGVVLLKEPNR 120 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 VAD + AM+ VV +PVTVKTRIG+D+ +SY++L FI VS G C+ FIIHARKAWL G Sbjct: 121 VADAIAAMKAVVRLPVTVKTRIGVDNDESYDYLASFIRQVSLAG-CDTFIIHARKAWLHG 179 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQN 239 +SPKENREIPPL+YP VYQ+KRDFPHLT+ +NGGI L+ A LQH+D VM+GR A+ N Sbjct: 180 VSPKENREIPPLNYPWVYQIKRDFPHLTIVLNGGITCLKRAYQQLQHVDAVMIGRAAWYN 239 Query: 240 PGILAAVDREIFGSS-DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 P + A +D I +++ PY+E+ L G L H+ + +LGLF G+ G Sbjct: 240 PYLFAQLDALISPQDRFIVPHRFSIILQYLPYLEKALKSGENLAHLIQPLLGLFHGVVGT 299 Query: 299 RQWRRYLSENAHKAGADINVLEHALKLVADK 329 +QWR+ LSE + + + + E + ++ + Sbjct: 300 KQWRQTLSELLQRRYSFVKIKETLQEFISRR 330 >UniRef50_D1R8P9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R8P9_9CHLA Length = 342 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 78/325 (24%), Positives = 135/325 (41%), Gaps = 21/325 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEE 62 ++ AP+ +D R S L+Y EMV A++ L + ++ Sbjct: 11 NLTLPNPVFYAPLAGCSDFPFRQMSARYS-PGLMYCEMVKMDALVRHDPNTFRMLDFDKD 69 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 HP+ QL GS P A+ AK+ E G+D ++LN GCP D+V G+ L+ N L+ + Sbjct: 70 MHPIGGQLCGSKPQLAAKAAKIIEDLGFDVVDLNCGCPVDKVTKDGSGSGLLKNPLLIGE 129 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 + M V IPVTVK R G DD++ + I ++ K + IH R Sbjct: 130 ILSEMVAAVKIPVTVKIRAGWDDEN---LCAEEITQIAEKAGAKAITIHGRT-------- 178 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNP 240 ++ P ++ + K+ H+ + NG + AK + D V+V R P Sbjct: 179 RQQAYRGPANWDHIKASKQVAKHIKVIGNGDVMDPTSAKRMFEYTGCDAVLVARGTMGQP 238 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYI---ERELSQGTYLGHITRHMLGLFQGIPG 297 I + + G + P +A+Y + ER + + + R + G Sbjct: 239 WIAQDILNYLQGGTIRVHTPEDCRQALYEHFLCTERYYNPRQVVIEMRRVGCWYIKSSGG 298 Query: 298 ARQWRRYLSENAHKAGADINVLEHA 322 R++R +S A +++++ Sbjct: 299 TREFRGLISR-ASSPDQVKDLIQNF 322 >UniRef50_Q1IVR5 Dihydrouridine synthase TIM-barrel protein nifR3 n=2 Tax=Acidobacteria RepID=Q1IVR5_ACIBL Length = 370 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 83/336 (24%), Positives = 144/336 (42%), Gaps = 22/336 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK----GDYLA 58 + V +APM TD R F+R L L+ TE + + + YL Sbjct: 24 QIGSVEIRPATVLAPMAGVTDTVFRRFIRNLGGCGLMMTEFTSADGLARMREAKARRYLT 83 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 + E P++ QL GSD LA AK+ + G+D ++LN+GCPS RV G+ L+ + Sbjct: 84 FYGNERPISAQLFGSDAETLADAAKVVQDLGFDLVDLNLGCPSKRVVKCNGGSGLLRDLP 143 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + +++R V+IP TVK R G ++++ ++ +HAR Sbjct: 144 QIKVIFESVRKAVTIPFTVKFRAGWNEKELVFLEL---AKLAENCGLNAVAMHART---- 196 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREA 236 +E ++ + LK+ + + NG I++ E+A A + D VM+GR A Sbjct: 197 ----REQGYSGQANWGWIADLKQ-VVKIPVIGNGDIRTPEDAAAMVAKTGCDAVMIGRSA 251 Query: 237 YQNPGILAAVDREIFGSS---DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 NP I +++ T+ D ++R + + +QG G + + Sbjct: 252 ASNPWIFRQIEQYTATGRYDLPTNEDRYEMIRMYFRMLIENDTQG-AEGKMKQFASWFTH 310 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALKLVADK 329 G+PG R+ + E + + V + L+A K Sbjct: 311 GVPGGGVLRKAVYEAKKRETILVAVDQFFEALLAGK 346 >UniRef50_B0VH62 Dihydrouridine synthase family protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VH62_9BACT Length = 321 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 133/307 (43%), Gaps = 23/307 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEEEHPV 66 +AP+ ++D R + +LY+EMV+ + L + E EHP Sbjct: 8 KPLLFLAPLAGYSDSAFRQICKNWGAE-VLYSEMVSADGLTRNSAKTLQYVQFDESEHPF 66 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q+ GS+P +A+ ++ D +++N+GCP +V G+ LM L VK Sbjct: 67 GIQIFGSNPLIMARAVEVLLPLKPDFMDINMGCPVKKVIRKGAGSALMQTPSLAGKIVKE 126 Query: 127 MRDVV--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +++ + IP++VK R G + Q+ + + + +H R + Sbjct: 127 VKNALLGRIPLSVKFRSGWNFQNQNYLQFGLMLQ---ECGADFLCLHPRTS--------S 175 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGI 242 ++ ++ LK++ + + NG IK+ E+A+ + DG+M+GR A P + Sbjct: 176 QMFSGTSNWEQIKILKQNV-QIPVVGNGDIKTPEDAQRMITETNCDGIMIGRGALGKPWL 234 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIER---ELSQGTYLGHITRHMLGLFQGIPGAR 299 A + I + +V+ ++ ++++ S+ + + H+ +GI G Sbjct: 235 FAQSRQLISTGTYNPVIQKEIVKTIFAHLDKALLYKSEDVVVREMRAHLCFYTKGILGGA 294 Query: 300 QWRRYLS 306 + R ++ Sbjct: 295 ELRNQIN 301 >UniRef50_A7S213 Predicted protein n=1 Tax=Nematostella vectensis RepID=A7S213_NEMVE Length = 570 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 68/298 (22%), Positives = 121/298 (40%), Gaps = 18/298 (6%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---A 58 EK + +S + +AP+ + R + + + EM ++ G+ Sbjct: 209 QEKKRIDFSDKLYLAPLTTIGNLPFRRICKQYGAD-ITCGEMAMCTNLLQGQQSEWALVK 267 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLAE-ARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 E +QL G+ P + +CA+L + D I++N GCP D V N G+ LM Sbjct: 268 RHSSEDIFGVQLCGAFPDTMTKCAELLQKETDVDFIDINTGCPIDLVFNKGAGSALMERK 327 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 + V+ M+ V+ IP+TVK R GI D+ + + G +M IH R Sbjct: 328 GKLQQIVQGMKSVIDIPLTVKIRAGIHDKKYTWNAHKLVGNLRDWGT-DMVTIHGR---- 382 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGRE 235 +E R D+ + ++ + + + NG I S E+A H + + GVM+ R Sbjct: 383 ----SREQRYTKSADWDYISEVAKLASPMPVFGNGDILSFEDAMQHRKQAGVAGVMIARG 438 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 A P I + + + ++ + ++R +E S + R +L Sbjct: 439 AIIKPWIFTEIKEQRHW-DISSSERLDILRQFVNAGLEHWGSDTQGVEKTRRFLLEWL 495 >UniRef50_B2A3T5 TIM-barrel protein, nifR3 family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3T5_NATTJ Length = 327 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 71/333 (21%), Positives = 133/333 (39%), Gaps = 23/333 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 + VAPM TD R L S L+ EMV+ +++G + + + Sbjct: 8 KLTLDNCIIVAPMAGVTDYPYRRILAKFS-PGLICGEMVSAKGMVYGNKKTEEMVIHHNQ 66 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 + Q+ GSDP +A A E G D I++N+GCP+ ++ G+ L+ L + Sbjct: 67 GVHYSQQIFGSDPKVMADAAVKLENLGVDSIDVNMGCPAPKIVKNGEGSALLKKPHLAQE 126 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 V+ + + V++PVTVK R G D + S + +H R Sbjct: 127 IVREIVNSVNLPVTVKIRKGFDRKSSDPLELALRLQEV---GIKALAVHGRTC------- 176 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNP 240 E + D+ V +LK ++ + + NG I S E+A + L+ DG+M+GR NP Sbjct: 177 -EQQYSGKADWEVVAKLK-NYLDIPVIGNGDIFSSEDAVSALEMTACDGIMLGRGLMGNP 234 Query: 241 GILAAVDREIFGSSDTD-ADPVAVVRAMYPYIE---RELSQGTYLGHITRHMLGLFQGIP 296 ++ + + + + M + E + + + + +H+ + +P Sbjct: 235 WLIEQTKGMLIKDEKIESPEIHEIKNEMKSHFENAIKYYGESKGIAEMRKHISWYLKSLP 294 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVADK 329 G+ + + + L + + K Sbjct: 295 GSTSIKDEVMRLTDVNQIWFS-LNEYFQALEKK 326 >UniRef50_Q55724 Probable tRNA-dihydrouridine synthase 1 n=34 Tax=Cyanobacteria RepID=DUS1_SYNY3 Length = 355 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 75/329 (22%), Positives = 140/329 (42%), Gaps = 22/329 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK--GDYLAYS 60 + + R +P+ TD R +R + +LYTEMV+ I H + + Sbjct: 34 QIGSLTLHSRVLQSPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEIHHLRTLPQVMEID 93 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E+P+++QL P +A+ A+ A A+G +++N+GCP +++ G+ L+ + Sbjct: 94 PRENPISIQLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGGGSSLLRQPAVA 153 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 VK + V +PVTVKTR+G DD + + +F + G +M +H R Sbjct: 154 EAIVKTVVAAVDVPVTVKTRLGWDDGEIN--IVEFAQRLQDAG-AQMLTLHGRT------ 204 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQ 238 + + + ++K+ + + NG I S+E A A L+ DGVM R + Sbjct: 205 --RAQGYNGRARWQWIAKVKQALT-IPVIANGDIFSVEAAIACLEETGADGVMCSRGSLG 261 Query: 239 NPGILAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 P ++ ++ T A+ + + + Q L +H+ + Sbjct: 262 YPFLVGEIEHFFKTGEKRKAPTVAEKLTCAQEHLQMLWEYKGQR-GLFQARKHLAWYCKD 320 Query: 295 IPGARQWRRYLSENAHKAGADINVLEHAL 323 PGA R L + + ++L+ A+ Sbjct: 321 FPGAAALREQLFQ-INSVQEGKDLLDQAI 348 >UniRef50_D0KZZ8 Dihydrouridine synthase DuS n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZZ8_HALNC Length = 357 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 170/321 (52%), Positives = 221/321 (68%), Gaps = 2/321 (0%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHPVAL 68 S F +APMLDWTD H R RL++RN LYTEMVTTGA++HG +L+++ EHPVAL Sbjct: 8 SWHFCIAPMLDWTDTHYRVLARLMTRNARLYTEMVTTGALLHGDVSRHLSFNAAEHPVAL 67 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 QLGGSDP+ LA A L GYDEINLNVGCPSDRVQNG FGACLM ++VA V+AM+ Sbjct: 68 QLGGSDPSDLAAAAVLGAEWGYDEINLNVGCPSDRVQNGSFGACLMATPEVVAKGVRAMQ 127 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 V +PVT+KTR+GID DS+E FI+ V+G+G CE+FIIHARKAWL GLSPKENREI Sbjct: 128 ASVDVPVTLKTRVGIDRSDSFEAFARFIDIVAGQGGCEVFIIHARKAWLDGLSPKENREI 187 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM-DGVMVGREAYQNPGILAAVD 247 PPL VY+++ +P LT +NG ++++ E +A L + G+MVGR AYQ+ L VD Sbjct: 188 PPLRRDFVYRIQDAYPELTFVLNGKLETIPEMQAELARVPGGIMVGRAAYQHVDWLRFVD 247 Query: 248 REIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 + +F S AVV+ Y+ + L GT + + + +L LF G+PGAR +RR+LSE Sbjct: 248 QMLFDHSAPIPTRSAVVQGYRAYMLQALESGTPMPPLLKPLLTLFNGLPGARAFRRHLSE 307 Query: 308 NAHKAGADINVLEHALKLVAD 328 + DI+VL+ AL L+ D Sbjct: 308 QGPRRKTDIHVLDEALDLIPD 328 >UniRef50_A0Q6L0 TRNA-dihydrouridine synthase n=19 Tax=Francisella RepID=A0Q6L0_FRATN Length = 328 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 73/335 (21%), Positives = 136/335 (40%), Gaps = 25/335 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAY 59 + D+ +APM + D R + L+YTEMV+ A++ + L Sbjct: 4 KIADIEIENNVVLAPMAGFCDSAFRTICKEHGA-GLIYTEMVSNKAVVERNWETMEMLYM 62 Query: 60 SEEEHPVALQLGGSDPAALAQCAK-LAEARGYDEINLNVGCPSDRVQNG-MFGACLMGNA 117 E P+ +Q+ G+D + K +AE D +++N+GCP +V GA L+ + Sbjct: 63 ENSEKPLGIQIFGTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDV 122 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 + + + A+ V PVTVK RIG DD++ + IH R Sbjct: 123 NRIHEILTAVVKAVHKPVTVKMRIGWDDKNINAIE---VAKACEDAGVSAIAIHGRT--- 176 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGRE 235 +E ++ + +++ + + NG + AKA ++ +D VMVGR Sbjct: 177 -----REQMYTGKANWDIIRDVRKAV-DIVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRA 230 Query: 236 AYQNPGILAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 + NP I + + + T + V V+ + + + + I H Sbjct: 231 SRGNPWIFRQIAKYLNTGELIPPPTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFY 290 Query: 292 FQGIPGARQWRRYLSENAHKAGADINVLEHALKLV 326 Q +P ++++R L++ H+ +LE + Sbjct: 291 LQDLPNSKEFRMKLNQLEHE-QEIFKILEEYKSFL 324 >UniRef50_A0M6M9 TRNA-dihydrouridine synthase n=16 Tax=Bacteroidetes RepID=A0M6M9_GRAFK Length = 330 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 133/331 (40%), Gaps = 23/331 (6%) Query: 1 MPEKTDVHW-SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---Y 56 M + ++ +APM D +D R + + ++YTE +++ +I Sbjct: 1 MAKIGNIEVGDFPLLLAPMEDVSDPPFRALCKEQGAD-VVYTEFISSEGLIREAAKSTMK 59 Query: 57 LAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 L E+E PV +Q+ G++ ++ Q ++ E G D I++N GCP +V + GA ++ + Sbjct: 60 LDIYEKERPVGIQIFGANLESMLQSVEIVEKSGPDIIDINFGCPVKKVVSKGAGAGILKD 119 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 L+ +AM S+P+TVKTR+G D + + + G C+ IH R Sbjct: 120 IDLMVSLTEAMVKNTSLPITVKTRLGWDHDSI--KIVEVAERLQDVG-CKAISIHGRT-- 174 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFP-HLTMSINGGIKSLEEAKAHLQ--HMDGVMVG 233 + D+ + ++K + H+ + NG + S E+A +DG M+G Sbjct: 175 ------RAQMYKGEADWAPIAEVKNNPRMHIPVFGNGDVDSPEKAMEMRDNFGLDGAMIG 228 Query: 234 REAYQNPGILAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHML 289 R + P V T + V R + + RH Sbjct: 229 RASIGYPWFFREVKHYFETGKHLAPPTLEERVDAARRHLQMAIDWKGERLGVFETRRHYT 288 Query: 290 GLFQGIPGARQWRRYLSENAHKAGADINVLE 320 F+GIP +++R + + E Sbjct: 289 NYFKGIPHFKEYRMKMVTSDDSVDVFKAFDE 319 >UniRef50_B8GCQ5 TIM-barrel protein, nifR3 family n=6 Tax=Chloroflexi (class) RepID=B8GCQ5_CHLAD Length = 351 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 83/326 (25%), Positives = 135/326 (41%), Gaps = 21/326 (6%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI---IHGKGDYLAYSEEE 63 + +APM TD R + L L+ TEM ++ + L Y EE Sbjct: 22 IKIEPNIVLAPMAGVTDSIFRRMILRLGGCGLVSTEMTNAASVSPKALRRHRLLDYLPEE 81 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P+ +Q+ G+DP +A A++ E G D I++N GCPS +V G G+ L+ + + Sbjct: 82 RPLTMQISGNDPDLVANAARVVEQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKMERL 141 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 ++A+R V IPVT+K R G D+ + +H R + Sbjct: 142 LRAVRAAVQIPVTLKLRAGWDEASLNFIE---AGQRAEAAGVAALTLHPRT--------R 190 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPG 241 E D+ RV LKR + + +G + + ++A L+ DGVM+GR A NP Sbjct: 191 EQGYKGQADWSRVAALKRAVS-IPVIGSGDVVTAQDALIRLRDSGADGVMIGRGAIANPW 249 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYI---ERELSQGTYLGHITRHMLGLFQGIPGA 298 I V G + + P + Y+ EL + L I + + + G+PG+ Sbjct: 250 IFRQVADLRQGRTPFEPTPADKYHLLLEYMAIYAEELPERLALNKIKQLIGQFYIGLPGS 309 Query: 299 RQWRRYLSENAHKAGADINVLEHALK 324 R + + A A +E Sbjct: 310 NHLRVAVHTSTSLAAAQ-EAIERFFA 334 >UniRef50_Q6F288 TRNA dihydrouridine synthetase n=3 Tax=Mollicutes RepID=Q6F288_MESFL Length = 325 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 74/340 (21%), Positives = 136/340 (40%), Gaps = 30/340 (8%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAY 59 + +V G+ PM ++ R + + L+ EMV+ + H LA Sbjct: 2 KIGNVEIKGKLVQGPMAGVSNPPFRLISKEKGAD-LVCAEMVSVEGMTHNNKKTFSMLAV 60 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRV-QNGMFGACLMGNA 117 ++EHP+++Q+ G+D + K E D I+LN+GCP+ +V G+ L+ Sbjct: 61 EKKEHPMSMQIFGNDVESFIVATKWIDENVDCDIIDLNIGCPAPKVAVRSASGSSLLKTP 120 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 +L+ D VKA+ + S PVT K R+G D + ++ + K +H R Sbjct: 121 ELIYDIVKAVVENTSKPVTAKIRLGWDKESVNAVE---VSKLIEKAGASGITVHGRT--- 174 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGRE 235 + D+ ++ ++K ++ + NG + AKA L+ DGVM+ R Sbjct: 175 -----RSEFYSGHADWEKIKEVKEAV-NIPVIGNGDVIDGPSAKAMLELTGCDGVMISRG 228 Query: 236 AYQNPGILAAVDREIFGS----SDTDADPVAVVRAMYPYIEREL-SQGTYLGHITRHMLG 290 NP I + + + A+ V + +G+ + +H+ Sbjct: 229 CQGNPWIFREIAHFLETGEELDKPSFAEWKETVLKHAKMLIDYKQDEGSAIREFRKHLTW 288 Query: 291 LFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 F +P + L E A+K IN ++ + Sbjct: 289 YFAALPK-TEILNQLKEEANK----INTFSDLENIIEKYK 323 >UniRef50_Q6MRF1 Transcription regulator homolog yacF n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRF1_BDEBA Length = 337 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 74/325 (22%), Positives = 132/325 (40%), Gaps = 21/325 (6%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEEEHPVA 67 F +APM TD R F++ L +++ TE+V+ I + L + E + P+ Sbjct: 10 NPFVLAPMAGITDHAFRTFIKKLDA-SVVVTELVSASGIEYKSDRTLKLMSFDESQRPIG 68 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +QL G +P +A+ A++AEA G D ++LN GCP +V G+ ++ + V V + Sbjct: 69 IQLFGEEPEIVARAAQVAEADGCDFVDLNFGCPVPKVVKKGAGSAILKDPAAVQKMVSTV 128 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + + IP+T+K R G D I ++ IH R + Sbjct: 129 KAAIKIPLTIKIRTGWDANSRNATE---ICNIAYNEGVSWVAIHGRT--------RAQSY 177 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAA 245 D+ + +K + + + NG I + +A LQ DGVM+GR +NP I Sbjct: 178 TGLADWDFIADVKAN-TKIPILGNGDILTPRQANLRLQQSGCDGVMIGRGCLKNPFIFMD 236 Query: 246 VDREIFGSSDTDADP--VAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 G D V++ + + I + + + G GA Q+R+ Sbjct: 237 ALSLWRGEPIKDVKRDYVSLFQGLQKEIVAHCDEHITGIQLRKFAAWFSTGYSGAAQFRK 296 Query: 304 YLSENAHKAGADINVLEHALKLVAD 328 L ++ + + + + Sbjct: 297 NLFQSKSN-DEIMALANEFFASIGN 320 >UniRef50_P44965 tRNA-dihydrouridine synthase B n=20 Tax=Pasteurellaceae RepID=DUSB_HAEIN Length = 330 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 77/332 (23%), Positives = 138/332 (41%), Gaps = 23/332 (6%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 64 R +APM TD+ R L ++EM++T + LA+SE+ Sbjct: 7 QLRNRVLLAPMAGITDQPFRRLCAYYGA-GLTFSEMMSTNPQVWHTEKSKLRLAHSEDLG 65 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 A+Q+ GSDP +AQ A + G I++N+GCP+ +V + G+ L+ LV + Sbjct: 66 LNAVQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSALLQFPDLVEKIL 125 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 + + V++PVT+K R G D + C I ++ + + +H R + Sbjct: 126 REVVSAVNVPVTLKIRTGWDKSNRN---CVQIGKIAEQCGIQALTVHGRT--------RA 174 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGI 242 +Y + +K+ + + NG I S +AK L D +M+GR A NP + Sbjct: 175 CLFEGEAEYDNIKAVKQAIA-IPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWL 233 Query: 243 LAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 AV+ I +S + + + + + + +H+ QGI Sbjct: 234 FQAVENLIEHNSISQMPSLKEKCGQILRHIQELHQFYGEQKGYRIARKHVAWYLQGIQPD 293 Query: 299 RQWRRYLSENAHKAGADINVLEHALKLVADKR 330 +++ + + VLE L+ DK+ Sbjct: 294 SVFKQTFN-AISDPKEQLIVLEDFFNLILDKK 324 >UniRef50_A9NE09 tRNA-dihydrouridine synthase n=2 Tax=Mollicutes RepID=A9NE09_ACHLI Length = 336 Score = 286 bits (732), Expect = 8e-76, Method: Composition-based stats. Identities = 81/324 (25%), Positives = 131/324 (40%), Gaps = 24/324 (7%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVA 67 + +APM ++ R R L +++ EMV+ AI L + EE P A Sbjct: 12 NKLILAPMAGVSNHPFRLMARQLGA-GVVFAEMVSDKAIFFQNPKTLQMLYMTVEEKPAA 70 Query: 68 LQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRV-QNGMFGACLMGNAQLVADCVK 125 Q+ GSD + + A + D I++N+GCP +V GA LM + Q + D VK Sbjct: 71 QQIFGSDLETMVEAAMFIDKNSNCDFIDINMGCPVPKVAIGAQAGASLMKDPQKIYDIVK 130 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+++ VS PVTVK R G D + + + K + +HAR + Sbjct: 131 AIKEKVSKPVTVKIRSGWDSESVNAVE---VAKMIEKAGASLITVHART--------RAQ 179 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL 243 D + +K + + NG I + AK L+ D VM+GR + NP I Sbjct: 180 GYSGEPDLDVIKAVKEAVS-IPVIGNGNIVDGKSAKHMLEYTGCDAVMIGRASLGNPWIF 238 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIE---RELSQGTYLGHITRHMLGLFQGIPGARQ 300 ++ + G V M + + + + T + H +G+P A Q Sbjct: 239 REINAYLNGEETPVRTYEEVKTLMIRHFDDLAKLKGEHTACLEMRSHGPWYLKGLPKASQ 298 Query: 301 WRRYLSENAHKAGADINVLEHALK 324 R L+ ++A + LE Sbjct: 299 VRAKLARTTNRAE-YMENLEMYFD 321 >UniRef50_C6XGY7 tRNA-dihydrouridine synthase A n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XGY7_LIBAP Length = 322 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 145/321 (45%), Positives = 195/321 (60%), Gaps = 11/321 (3%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY-LAYSEEEHPVALQLGGSDPA 76 M+DWTDRH R+F RLL+ N LLYTEM+ AI+ G L +S +E P+ALQ+GG+D + Sbjct: 1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADIS 60 Query: 77 ALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVT 136 L + AK+ E GY+EINLNVGCPS RV G FGACLM N +V DC+ AM +SIPVT Sbjct: 61 KLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVT 120 Query: 137 VKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRV 196 VK RIG+DDQ L + + ++ K IHARKA L GLSPK+NR+IP LDY V Sbjct: 121 VKCRIGVDDQIPAVALRNLVKSIK-KSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIV 179 Query: 197 YQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIF---GS 253 Y++K++ P L + +NGG++ + +A L +DGVM+GR AY+N +L VD Sbjct: 180 YEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLTG 239 Query: 254 SDTDADPVA------VVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 S V + +M Y R L G L ITRHM+GLF G P +R+ R L+ Sbjct: 240 SSPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTV 299 Query: 308 NAHKAGADINVLEHALKLVAD 328 A + A +++E A L+ + Sbjct: 300 EAGASTATHHIIETAFNLMIE 320 >UniRef50_C2KYD0 Dihydrouridine synthase n=4 Tax=Bacteria RepID=C2KYD0_9FIRM Length = 344 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 125/320 (39%), Gaps = 23/320 (7%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSE 61 D G +APM TD R + + +L +TEMV+ AI +G + L + Sbjct: 33 KDCELPGNILMAPMAGVTDLPYRILCKEMG-LSLSFTEMVSAKAIYYGNQNTDSLLVHKG 91 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E V+ QL GSDPA +A+ A E +D I++N+GCP +V G+ LM N L Sbjct: 92 EPGLVSAQLFGSDPALMAEMACRIEE-DFDGIDVNMGCPVPKVVRNQEGSALMTNLPLAE 150 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 + M + P+TVK RIG D ++ IH R Sbjct: 151 QVLSTMAKALKKPLTVKFRIGFTDD---AINVVEFAKMAEASGVASVTIHGRT------- 200 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQN 239 +E ++ + + K + + NG I E+A A L +DGV + R N Sbjct: 201 -REQYYRGKANWQYIKEAKEAV-KIPVFGNGDIFQEEDALAMLLSTGVDGVALARGIQGN 258 Query: 240 PGILAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 P ++ A + + ++ + + L + +H+ +G+ Sbjct: 259 PFLIRACVSLLSEGKKLPPVSLSERKEMMLRHLKLMVEIKGEHLALLEMRKHLSWYMEGL 318 Query: 296 PGARQWRRYLSENAHKAGAD 315 A +WR+ ++ Sbjct: 319 ENAARWRQRVNTENDLEKVF 338 >UniRef50_Q87AY2 tRNA-dihydrouridine synthase A n=15 Tax=Bacteria RepID=DUSA_XYLFT Length = 332 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 164/327 (50%), Positives = 214/327 (65%), Gaps = 3/327 (0%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYS 60 EK + R SVAPM++WTDR+CR F R+L+ + LYTEMV A+I+G + L ++ Sbjct: 7 QEKQGISGDFRLSVAPMMNWTDRYCRVFHRVLAPSARLYTEMVHAKAVIYGDRERLLGFA 66 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E PVALQLGGS+PA LA+ A +A GY EINLN GCPSDRVQ G FGACLM LV Sbjct: 67 SVEQPVALQLGGSEPALLAKAASIAVDWGYSEINLNCGCPSDRVQAGSFGACLMREPALV 126 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 ADCV AM VVS+PVTVK R+G+++ D Y F++ V G M ++HAR AWL GL Sbjct: 127 ADCVAAMAAVVSVPVTVKCRLGVNEDDDYGRFAKFVDWVIGASSSRMIVVHARNAWLQGL 186 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNP 240 SPKENREIPPL Y VY+LKR+ P L + +NGGI S+E HL +DGVM+GR AYQ+P Sbjct: 187 SPKENREIPPLRYDWVYRLKRECPELAVVLNGGITSVEAGLDHLLMVDGVMLGRAAYQDP 246 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 IL + + ++RA+ PY+E L QG L HI RH+LGLF G PG R Sbjct: 247 YILHQFYCALSNAPVLPR--ALLLRALRPYVEAWLEQGVTLRHIVRHLLGLFHGQPGGRV 304 Query: 301 WRRYLSENAHKAGADINVLEHALKLVA 327 +R+ L++ ++ AD +++E AL ++ Sbjct: 305 FRQVLTQGGQRSDADWSLVEQALSIIE 331 >UniRef50_C9MVS9 tRNA dihydrouridine synthase A n=2 Tax=Leptotrichia RepID=C9MVS9_9FUSO Length = 332 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 132/330 (40%), Positives = 192/330 (58%), Gaps = 16/330 (4%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY-LAYSEEEHPVA 67 + S+APM+D TDR+ R F+R+++++ LLYTEM+T A+++G DY L + E EHP+ Sbjct: 6 VKNKISIAPMVDRTDRNFRNFVRMINKDVLLYTEMITAQAVLNGDLDYILGFDEVEHPIV 65 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 LQ+ ++P Q K+AE YDEINLNVGCPSDRV M GA LM + VA+ VK+M Sbjct: 66 LQIAATNPKEAYQAVKIAEKYNYDEINLNVGCPSDRVSGNMMGAYLMAFPEEVANIVKSM 125 Query: 128 RDVVSIPVTVKTRIGIDDQ------------DSYEFLCDFINTVSGKGECEMFIIHARKA 175 +D PV+VK RIGID + D YE + +FI+ ++ + +IIHAR A Sbjct: 126 KDATGKPVSVKHRIGIDGKNVLPNSFKRTLLDKYEDMENFIS-ITKQAGVSKYIIHARIA 184 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGRE 235 L+GL PK+NR IPPL Y VY++K+D P L + INGGIK++EE HL+++D M+GRE Sbjct: 185 ILAGLDPKQNRSIPPLRYDEVYRVKKDNPDLHIEINGGIKTVEEIDEHLKYVDSAMLGRE 244 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 Y NP IL + + + ++ M Y+E Q H GLF + Sbjct: 245 IYDNPMILTEFGKYY--GKEINITRKEIIEKMIYYVENMEKQQLRPHLFLMHAHGLFHNV 302 Query: 296 PGARQWRRYLSENAHKAGADINVLEHALKL 325 G++ W+R ++E +G +L+ Sbjct: 303 RGSKAWKRAINEPKANSGTLRELLKKIENF 332 >UniRef50_A5EXU5 TRNA-dihydrouridine synthase A n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXU5_DICNV Length = 335 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 153/329 (46%), Positives = 208/329 (63%), Gaps = 8/329 (2%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS 60 MP+ + + RF VAPM+DWT CR R+L LY+EM+TTGAI+ G Sbjct: 1 MPD----NSAWRFCVAPMMDWTTPACRQIHRILLPKARLYSEMITTGAILFGDAQRYLTH 56 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 + + P ALQLGGS+P LA+ +A++ Y E+NLNVGCPSDRVQN GACLM + +LV Sbjct: 57 QNDEPCALQLGGSNPDELARATAIAQSYHYAEMNLNVGCPSDRVQNNQIGACLMKSPRLV 116 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 A C+ AM+ +PV++K R+GID+QD + DF++ +S + C +FI+HARKAWLSGL Sbjct: 117 AQCLTAMQKESDVPVSIKHRLGIDEQDE-HLVFDFVDQISQESPCRIFIVHARKAWLSGL 175 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNP 240 SPKENR PPL Y VY++K FP LT+ INGGI + + HL ++DGVM+GR AYQ P Sbjct: 176 SPKENRTAPPLHYEIVYKIKEQFPELTIIINGGIDFIAACQNHLHYVDGVMLGRAAYQQP 235 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 +L A D +V + + L +G L TRH+LGLF G GA++ Sbjct: 236 QLLLAARALFG---DAVMSETEIVPQITQLLMNALDRGERLHDYTRHLLGLFHGKNGAKR 292 Query: 301 WRRYLSENAHKAGADINVLEHALKLVADK 329 +R+ LSE A +AG+DINV + AL +A + Sbjct: 293 FRQILSECAPRAGSDINVWQQALAAMAPQ 321 >UniRef50_C1A3V7 Putative tRNA-dihydrouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3V7_GEMAT Length = 349 Score = 284 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 135/335 (40%), Gaps = 25/335 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEE 63 V S +APM ++ R + ++ TE ++ I L ++ EE Sbjct: 10 VPHSVPLYLAPMAGVSESPFRRLCHAHGAD-VVVTEFLSAEGIRRENEATISKLRFAPEE 68 Query: 64 HPVALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 P+ +Q+ GS+P+A+A A L D +++N GCP +V G+ + + LV + Sbjct: 69 RPIGVQIFGSEPSAMADAAALVTDMFSPDFVDINFGCPVKKVVRRNGGSGCLKDLDLVEE 128 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 ++A+ +PVTVKTR G +++ ++F +HAR Sbjct: 129 IIRAVSKATPLPVTVKTRSGWNEEMRDPVGIALRMQ---DAGAKVFALHART-------- 177 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNP 240 + ++ + ++ + + NG IK+ +AK L H DG+M+GR +Y P Sbjct: 178 RTQMYSGSANWDEIARVAEAL-DIPVLGNGDIKTALDAKRMLDHTKADGIMIGRGSYGQP 236 Query: 241 GILAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLG-HITRHMLGLFQGI 295 + I G+ + + A+ ++ +H+ +G+ Sbjct: 237 WVFKQTRALIDGTPVPETPGVQERFAIALDHARMVQGYEVDAIGAALEFRKHLGWYVKGL 296 Query: 296 PGARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 P + + R L + A + + + L+ + + Sbjct: 297 PNSAELRAKLHQVRDFAEVE-TIFTNYLEFYEEYK 330 >UniRef50_UPI000194DF67 PREDICTED: dihydrouridine synthase 3-like (S. cerevisiae) n=2 Tax=Taeniopygia guttata RepID=UPI000194DF67 Length = 718 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 116/296 (39%), Gaps = 19/296 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAY 59 EK + G+ +AP+ + R + + + EM ++ G+ L Sbjct: 365 EKKKLEIQGKLYLAPLTTCGNLPFRRICKRFGAD-VTCGEMAVCTNLLQGQSSEWALLKR 423 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +QL G+ P + +CA+L D +++NVGCP D V G LM + Sbjct: 424 HHTEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMTRSN 483 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 V+ M V+ +PVTVK R G+ Q+ I + G M +H R Sbjct: 484 KFEQIVRGMNSVLDVPVTVKIRTGV--QEKVNVAHKLIPRIREWG-ASMVTLHGR----- 535 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ-HMDGVMVGREAY 237 +E R D+ + + R + + NG I S E+A +Q + G+M+ R A Sbjct: 536 ---SREQRYTRSADWHYIAECARLASPMPLFGNGDILSYEDANRAMQMGVSGIMIARGAL 592 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P + + + + ++ +++ Y +E S + + +L Sbjct: 593 IKPWLFTEIKEQRHW-DISSSERFEILKDFTNYGLEHWGSDTQGVEKTRKFLLEWL 647 >UniRef50_C9KMX2 tRNA-dihydrouridine synthase n=3 Tax=Veillonellaceae RepID=C9KMX2_9FIRM Length = 322 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 130/332 (39%), Gaps = 24/332 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY--- 59 + + + +APM TD R + L + EMV++ I LA Sbjct: 2 KIGEFSFKTPVFLAPMAGVTDTAYRIIAHDMGCP-LCFAEMVSSQGIHFRNERTLAMLQS 60 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 +EE P+A+Q+ + P A+ A EA G D ++ N+GCP+ ++ G+ LM + + Sbjct: 61 EKEERPLAMQIFANTPEMAAEAAAFVEALGTADILDFNMGCPAPKIVKNGEGSALMRDPE 120 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + A+R V +PVTVK R G D + ++ + + +H R Sbjct: 121 RAFAILSAIRKAVKMPVTVKMRKGWDAAS---VNVVEMAKLAEEAGVDAIAVHGRT---- 173 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAK--AHLQHMDGVMVGREA 236 +E D+ + ++KR + + NG +++ ++ + DGVM+GR A Sbjct: 174 ----REQFYTGRADWEIIGEVKRAV-KIPVIANGDVRTFDDLDKIRAVTGCDGVMIGRAA 228 Query: 237 YQNPGILAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 NP I + T + AV+ + + + +H Sbjct: 229 QGNPWIFRQFTHYLETGERLPGPTMKERAAVILRHLDLLLKYKGDYVGPREMRKHATWYT 288 Query: 293 QGIPGARQWRRYLSENAHKAGADINVLEHALK 324 +GI R ++ + + +LE + Sbjct: 289 RGIVHGAILRDRFNKAVTREDF-VEILEEYFE 319 >UniRef50_Q5SMC7 tRNA-dihydrouridine synthase n=3 Tax=Thermus RepID=Q5SMC7_THET8 Length = 342 Score = 282 bits (723), Expect = 9e-75, Method: Composition-based stats. Identities = 149/319 (46%), Positives = 207/319 (64%), Gaps = 9/319 (2%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSEEEHPVA 67 R SVAPM+D TDRH R+ +R +S LYTEM A++ G + LA+ EEHP+A Sbjct: 2 LDPRLSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIA 61 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 LQL GSDP +LA+ A++ EA GYDEINLN+GCPS++ Q G +GACL+ + V + +KAM Sbjct: 62 LQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAM 121 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + V +PVTVK R+G++ +++Y L + ++ G ++F++HAR A L+ LS K NRE Sbjct: 122 GEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAG-VKVFVVHARSALLA-LSTKANRE 179 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 247 IPPL + V++LK DFP LT NGGI+SLEEA HL+ +DGVM+GR Y++P +L D Sbjct: 180 IPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLKRVDGVMLGRAVYEDPFVLEEAD 239 Query: 248 REIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 R +FG + V R M Y+E E+ +GT + RHML LF+G P R WRR LSE Sbjct: 240 RRVFGLP-RRPSRLEVARRMRAYLEEEVLKGTPPWAVLRHMLNLFRGRPKGRLWRRLLSE 298 Query: 308 NAHKAGADINVLEHALKLV 326 G + L+ AL+L+ Sbjct: 299 -----GRSLQALDRALRLM 312 >UniRef50_A9W195 Dihydrouridine synthase DuS n=41 Tax=Bacteria RepID=A9W195_METEP Length = 354 Score = 282 bits (723), Expect = 9e-75, Method: Composition-based stats. Identities = 167/329 (50%), Positives = 210/329 (63%), Gaps = 2/329 (0%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSE 61 EK + RFSVAPM+DWTDR CR F R LSR LYTEMVTTGA++HG + L + Sbjct: 20 EKLNELSGWRFSVAPMMDWTDRQCRAFHRTLSRRARLYTEMVTTGAVLHGDRERLLGFDA 79 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E P+A+QLGGS+P LA A++A GY EINLNVGCPSDRVQ+G FGACLM LV Sbjct: 80 YEQPLAVQLGGSNPDDLAAAARIAADFGYAEINLNVGCPSDRVQDGRFGACLMREPGLVG 139 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 CV A++ V +PVTVK R+G+DDQD E D + + ++HARKAWL GLS Sbjct: 140 ACVAALKAAVPVPVTVKCRLGVDDQD-IEEALDAVADAVVAAGGDGLVVHARKAWLKGLS 198 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPG 241 P+ENR++PPLDY RV +LKR P L +++NGGI + AKA L +DGVM+GR AY P Sbjct: 199 PRENRDVPPLDYGRVARLKRAHPDLPIAVNGGIADIAAAKARLGEVDGVMIGRAAYTEPA 258 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 +L VD E+FG AD A + A P + L +G L TRHMLGLF G PGAR + Sbjct: 259 LLLDVDAELFGEPAPVADAFAAIEAFEPIVAAGLERGLRLHAYTRHMLGLFNGRPGARAY 318 Query: 302 RRYLSENAHKAGADINVLEHALKLVADKR 330 RR+L+ A + L A+ V+ +R Sbjct: 319 RRHLATAGMGPEAGLATLREAVAKVSRER 347 >UniRef50_B0S217 Nitrogen regulation protein n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S217_FINM2 Length = 305 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 132/322 (40%), Gaps = 26/322 (8%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEE 63 ++ + +AP+ TD R L L +TEM++ + + L E Sbjct: 1 MNLNSNLFLAPLAGVTDIPFRILCGELGA-GLCFTEMISAKGLYYDDKKTKKLLDTDPRE 59 Query: 64 HPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 ++Q+ G +P +A + E + I++N+GCP+ ++ G+ LMG+ L D Sbjct: 60 KSTSVQIFGHEPEIIAYATRFLTENYNFKSIDINMGCPAPKIFKNGDGSALMGDLNLAED 119 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 ++A ++ +PV+VK R+GID+ + + + + +HAR + Sbjct: 120 VIRACKNNTDLPVSVKFRLGIDENSMNYMQL---AQICERLKVDYITLHARTRKM----- 171 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNP 240 D+ + ++ + + + NG + E+ + +++ + DGV++ R A QNP Sbjct: 172 ---FYSGEADWLHIKRVVENV-DIPVFGNGDCFTKEDIRKNMEYSNCDGVLLARGAMQNP 227 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 I + + + + + ++ + + + +H+ +G + + Sbjct: 228 FIFSD------DENKSKEEVIDTIKKHMQLKLEFYEERRAILEMRKHIQWYLKGFRNSNK 281 Query: 301 WRRYLSENAHKAGADINVLEHA 322 + +++ +L+ Sbjct: 282 VKNKINQL-TDLDEIYKILDEF 302 >UniRef50_A6CBK4 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=2 Tax=Planctomycetaceae RepID=A6CBK4_9PLAN Length = 365 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 69/327 (21%), Positives = 131/327 (40%), Gaps = 20/327 (6%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEEE 63 + R+ ++P+ +T+ R +R L L T++V ++ G L E+ Sbjct: 24 LQLESRYLLSPLAGYTNLPFRRIVRELGGVGLATTDLVNARGLLEGSEKTLQLTQTCPED 83 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P A+Q+ GS+P + A+L E+RG I++N+GCP +R+ G GA +M Sbjct: 84 SPFAVQIFGSEPQQMKDAAQLLESRGVHSIDINMGCPVNRIVKGGAGASMMCRPSDTVSL 143 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 V+ + + V IPV+VK R+G DD E F + K IH R + Sbjct: 144 VQTVVEAVKIPVSVKMRLGWDDS---ELSAPFFSREFEKVGVVAVAIHGRT--------R 192 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPG 241 E +++ + ++ + + NG + ++ EA L GV +GR A NP Sbjct: 193 EQGFRGVVNHDGIRRVVEAVDSIPVIGNGDVTNVAEADFMLKTTGCAGVSIGRGALANPW 252 Query: 242 ILAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 I + + + D + ++ + Y+ ++ + + + + Sbjct: 253 IFRQLVQWEQTGTYDPPGNFDDRLELLLRQFRYLLEMTTEKRAISMFRKMGHWYLKSMRV 312 Query: 298 ARQWRRYLSENAHKAGADINVLEHALK 324 R ++ V + A + Sbjct: 313 KPAMRHEFQLASNLDEFGQAVRKIAAE 339 >UniRef50_Q2RZL4 NifR3 family enzyme n=2 Tax=Rhodothermaceae RepID=Q2RZL4_SALRD Length = 443 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 75/327 (22%), Positives = 129/327 (39%), Gaps = 26/327 (7%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEEEHPVAL 68 +APM D +D R + + ++YTE V++ ++ + L +EE P+ + Sbjct: 76 PLFLAPMEDVSDPPFRILCKRYGAD-MMYTEFVSSAGLLREQEHEHQKLEIFDEERPIGI 134 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ G + + +A G D I++N GCP ++ GA ++ N + + A+ Sbjct: 135 QVWGGGIDEVRNATPMVDAAGPDVIDINFGCPVRKIVQKDGGAGVLRNLDKMRNITAAVM 194 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 + + PVTVKTR+G DD + + + +HAR +E + Sbjct: 195 EEATRPVTVKTRLGWDDDSIH---IVDVARMLEDMGVAALTVHART--------REQKYK 243 Query: 189 PPLDYPRVYQLKRD-FPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAA 245 + + +K + + NG E +A + +DGVM+GR A NP I Sbjct: 244 GDARWEWLRTIKEEGTRDMPFIGNGDALDPEAIEAMFEETGVDGVMLGRGALGNPWIFER 303 Query: 246 VDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 + + V VV L + T + + ++ F+G A Sbjct: 304 AKTYMETGELPPPPDWEERVQVVAEHLSLKCEWLGERTGVMEMRKNYSSYFKGFRNASTL 363 Query: 302 RRYLSENAHKAGADINVLEHALKLVAD 328 R L + KAG VLE L D Sbjct: 364 RHELMQPETKAG----VLEVMLNFKPD 386 >UniRef50_C0QKE4 Dhs2 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKE4_DESAH Length = 330 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 81/336 (24%), Positives = 136/336 (40%), Gaps = 30/336 (8%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAY 59 + D+ GR +AP+ T+ R + TL+ +EMV+ + L Sbjct: 2 KIGDLEIRGRTVLAPLAGITNLPFRIIAKGCGC-TLVCSEMVSAKGLEFNSEKTVQLLRT 60 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E PV++Q+ G++ ++A A+ R D I++N GC +V G LM + Sbjct: 61 DACERPVSVQIFGAEALSMANAARWIAERNVADIIDINFGCSVKKVARTGAGVALMKDMD 120 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 ++A+R VS+P T+K R G D S F I ++ + IH R A Sbjct: 121 NARAIIRAVRRAVSMPFTIKIRSGWDSSASQAFD---IARMAEDNGVDAIAIHPRTA--- 174 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREA 236 D+ + +LK + + NG I + E+ A + DGVMVGR A Sbjct: 175 -----AQGFRGRADWSMIARLKEMLT-IPVIGNGDITTPEQGVAMIQETGCDGVMVGRAA 228 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIE---RELSQGTYLGHITRHMLGLFQ 293 NP I ++ + G + + P+ + + M +E L + + + + Sbjct: 229 MGNPFIFGGIEALLRGEAWNEPSPMEIFQIMEEMVESHVAYLGERPACRMMRSRLAWFVK 288 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALKLVADK 329 G GA +RR L I L+ A+ L+ Sbjct: 289 GFAGASVFRREL--------TGIETLDQAMALIRRY 316 >UniRef50_Q0JEG3 Os04g0278900 protein n=3 Tax=Oryza sativa RepID=Q0JEG3_ORYSJ Length = 368 Score = 279 bits (715), Expect = 9e-74, Method: Composition-based stats. Identities = 129/321 (40%), Positives = 181/321 (56%), Gaps = 10/321 (3%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVALQLGGSD 74 M+DWTD H R RL+S++ LYTEMV I+H K +LA+ E+HP+ LQ+GGS+ Sbjct: 1 MMDWTDNHYRTLARLISKHAWLYTEMVVAETIVHQKDNLDRFLAFPAEQHPIVLQIGGSN 60 Query: 75 PAALAQCAKLAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQLVADCVKAMRDVVSI 133 LA+ +LA A YDEINLN GCPS +V FGA LM + + V D + A+ ++ Sbjct: 61 LDNLAKATELANAYSYDEINLNCGCPSGKVAGHGCFGARLMFDPEFVGDAMSAIAANCNV 120 Query: 134 PVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDY 193 PV+VK RIG+DD+DSYE LC+F++ V K FIIHARKA LSGLSP ENR +PPL Y Sbjct: 121 PVSVKCRIGVDDRDSYEELCEFVDKVVSKSPTRHFIIHARKALLSGLSPAENRNVPPLKY 180 Query: 194 PRVYQLKRDFPHLTMSINGGIKSLEEAKA-HLQHMDGVMVGREAYQNPG-ILAAVDREIF 251 + L RDFP + ++NGGI ++++ A Q VMVGR AY NP +L VD E++ Sbjct: 181 EYYFALLRDFPDVQFTLNGGITTIDQVTASIRQGAHRVMVGRAAYNNPWNMLGHVDSEVY 240 Query: 252 GSSDTDADPVAVVRAMYPY----IERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 G + ++ + Y + + + + + +L LF PG W+R Sbjct: 241 GMPTRRSSRRQILESYQVYGDSIMGQYGPSRPNVRQLVKPLLNLFHSEPGNGLWKRKADS 300 Query: 308 NAHKAGADINVLEHALKLVAD 328 + LE L + + Sbjct: 301 TLRHCKTLESFLEETLDAIPN 321 >UniRef50_D1AMN2 Dihydrouridine synthase DuS n=3 Tax=Bacteria RepID=D1AMN2_SEBTE Length = 337 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 138/328 (42%), Positives = 192/328 (58%), Gaps = 15/328 (4%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHPVAL 68 SVAPM+D TDR+ R F+R+++++ LLYTEMVT AIIHG L + E EHP+AL Sbjct: 5 KPVISVAPMVDKTDRYFRNFVRMINKDVLLYTEMVTAQAIIHGDLERILGFDEAEHPIAL 64 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ + P + K AE YDEINLNVGCPSDRV M GACLM +LV D +KA++ Sbjct: 65 QIAATTPEDAYKAVKTAENYAYDEINLNVGCPSDRVSGNMMGACLMAYPELVLDILKAIK 124 Query: 129 DVVSIPVTVKTRIGIDDQ------------DSYEFLCDFINTVSGKGECEMFIIHARKAW 176 + VT+K RIGID + D YE + +FIN + K + + +HAR A Sbjct: 125 EATGKAVTIKHRIGIDGKGILPDNAEKTLFDKYEDMLNFIN-IIEKAGADRYTVHARIAV 183 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREA 236 L+GL PK+NRE+PPL Y VY+LK + P++ + INGGIK+ E+ HL+++DGVM+GRE Sbjct: 184 LAGLDPKQNREVPPLRYDEVYRLKAEKPYMQIEINGGIKTKEDITEHLKYVDGVMIGREF 243 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 Y NP +LA V+ + + V+ M PY+E+ RH LGLF + Sbjct: 244 YDNPMLLAEVNSFYNNGEE-NISRYQVLEKMIPYLEKMEMNNERTHLFLRHTLGLFHNVK 302 Query: 297 GARQWRRYLSENAHKAGADINVLEHALK 324 G++ W+ +S K ++ LK Sbjct: 303 GSKYWKNSISSQNLKNNKGSLIIREILK 330 >UniRef50_Q7ZWS1 tRNA-dihydrouridine synthase 3-like n=3 Tax=Xenopus RepID=DUS3L_XENLA Length = 640 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 114/296 (38%), Gaps = 19/296 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAY 59 EK + + + +AP+ + R + L + + EM ++ G+ L Sbjct: 287 EKKTIDFRNKLYLAPLTTCGNLPFRRICKRLGAD-ITCGEMAMCTNLLQGQPSEWALLKR 345 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +QL G+ P + +CA+L D +++NVGCP D V G LM Sbjct: 346 HHSEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTN 405 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 VK M V+ +P+TVK R G+ Q+ I + G + +H R Sbjct: 406 KFEQIVKGMNSVLDVPLTVKIRTGV--QEKVNIAHKLIPNLRDWG-VSLVTLHGR----- 457 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL-QHMDGVMVGREAY 237 +E R ++ + Q + + + NG I S E+A L + GVM+ R A Sbjct: 458 ---SREQRYTKLANWEYIDQCAKIASPVPLFGNGDIISYEDANRALQTGVAGVMLARGAL 514 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P + + + + + +++ Y +E S + + ML Sbjct: 515 FKPWLFTEIKEQRHW-DISSTERFDILKDFTNYGLEHWGSDCQGVEKTRKFMLEWL 569 >UniRef50_Q5FMA1 Transcriptional regulator n=14 Tax=Firmicutes RepID=Q5FMA1_LACAC Length = 342 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 69/336 (20%), Positives = 127/336 (37%), Gaps = 24/336 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 + D+ R VAPM ++ R + L+ EM++ II+ L Sbjct: 7 KIRDITIPNRVVVAPMAGVSNSAFRVVCKEFGA-GLVVCEMISDHGIIYRNKKTLSMMDV 65 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 EHP+++Q+ G L Q A+ + D I++N+GCP +V G+ + ++ Sbjct: 66 DPREHPMSIQIFGGTEETLLQAAQYIDQNTDADIIDINMGCPVPKVTKTDAGSKWLLDSN 125 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + V A+ V PV+VK RIG D + + + M +H R Sbjct: 126 KIYQMVHAVVQNVQKPVSVKMRIGWDRKHVFAVENALAAQ---EAGASMIAMHGRT---- 178 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREA 236 ++ D+ ++ + + + NG I + E AK L VMVGR A Sbjct: 179 ----RKQMYQGEADWEVLHDVAQ-VLDVPFVANGDIATPELAKKALDDIGCTAVMVGRAA 233 Query: 237 YQNPGILAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 NP IL + + T + V + + + + + Sbjct: 234 LGNPWILKDMVHYLETGETLPPQTVREKVETAKHQLQGLIEIHGEKRAVPEFRQQAAYYL 293 Query: 293 QGIPGARQWRRYLSENAHKAGADINVLEHALKLVAD 328 +GIP + + R ++E + ++L++ + Sbjct: 294 KGIPRSARTRAKINEVWTRQEVY-DLLDNFVDEYEK 328 >UniRef50_A5FL15 tRNA-dihydrouridine synthase B-like protein n=14 Tax=Bacteroidetes RepID=A5FL15_FLAJ1 Length = 332 Score = 277 bits (709), Expect = 3e-73, Method: Composition-based stats. Identities = 71/340 (20%), Positives = 135/340 (39%), Gaps = 24/340 (7%) Query: 1 MPEKTDVHWS-GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---Y 56 M + ++ +APM D +D R + + ++Y+E +++ +I Sbjct: 3 MVKIGNIELPEFPLLLAPMEDVSDPPFRRLCKTHGAD-MMYSEFISSEGLIRDAIKSRMK 61 Query: 57 LAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 L + E PV +Q+ G D A+ +K+ D +++N GCP +V GA ++ + Sbjct: 62 LDIFDYERPVGIQIFGGDEEAMEMSSKIVSTVKPDLVDINFGCPVKKVVCRGAGAGVLKD 121 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 L+ KA+ +PVTVKTR+G D+ D + + IHAR Sbjct: 122 VDLMVRLTKAVIKGTDLPVTVKTRLGWDESSIN---IDEVAERLQDIGVQALTIHART-- 176 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFP-HLTMSINGGIKSLEEAKAHLQ--HMDGVMVG 233 + D+ + ++K + + + NG I S E+A + +DG+M+G Sbjct: 177 ------RAQMYKGHSDWSHIARVKNNPRITMPIFGNGDIDSPEKALQYKNEYGIDGIMIG 230 Query: 234 REAYQNPGILAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHML 289 R A P I + T D V R + + + + RH Sbjct: 231 RAAIGYPWIFNEIKHYFKTGEHLPAPTVIDRVEAARNHLKWSMEWKGERLGIVEMRRHYT 290 Query: 290 GLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVADK 329 F+GI +++++ L + +++ ++ A Sbjct: 291 NYFKGIHSFKEFKQKLVT-TDEPENLFAIMKEIEQVYAGY 329 >UniRef50_Q96G46 tRNA-dihydrouridine synthase 3-like n=17 Tax=Coelomata RepID=DUS3L_HUMAN Length = 650 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 116/296 (39%), Gaps = 19/296 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 EK + G+ +AP+ + R + + + EM ++ G+ Sbjct: 297 EKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGAD-VTCGEMAVCTNLLQGQMSEWALLKR 355 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 + E +QL G+ P + +CA+L D +++NVGCP D V G LM + Sbjct: 356 HQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRST 415 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 V+ M V+ +P+TVK R G+ Q+ + + G + +H R Sbjct: 416 KFQQIVRGMNQVLDVPLTVKIRTGV--QERVNLAHRLLPELRDWG-VALVTLHGR----- 467 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL-QHMDGVMVGREAY 237 +E R D+ + + + + + NG I S E+A + + G+M+ R A Sbjct: 468 ---SREQRYTKLADWQYIEECVQAASPMPLFGNGDILSFEDANRAMQTGVTGIMIARGAL 524 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P + + + + ++ + ++R Y +E S + R +L Sbjct: 525 LKPWLFTEIKEQRHW-DISSSERLDILRDFTNYGLEHWGSDTQGVEKTRRFLLEWL 579 >UniRef50_Q2RM54 Dihydrouridine synthase TIM-barrel protein nifR3 n=6 Tax=Clostridia RepID=Q2RM54_MOOTA Length = 334 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 82/332 (24%), Positives = 137/332 (41%), Gaps = 24/332 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAY 59 + V + +APM +TDR R R L YTEM++ +I+ + L Sbjct: 6 KIGPVTLAAPLIMAPMAGYTDRVFRLLAREAGA-ALTYTEMISAQGLIYNNKNTHALLDL 64 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 E PVA+QL G +P +A ++A A G I+LN+GCP+ ++ G+ LM + Sbjct: 65 KGEPGPVAVQLFGREPEIMAAATRIAVAAGAAIIDLNMGCPTPKIVKNGEGSALMRDLPR 124 Query: 120 VADCVKAMRDVVS-IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 A V AM +PVTVK R+G D+ IH R Sbjct: 125 AAAIVAAMVRAAGPVPVTVKMRLGWDEDSIN---VVEAARAVVYAGAAAVAIHGRT---- 177 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREA 236 + D+ ++K + + NG +++ +A L DGVMVGR A Sbjct: 178 ----RSQFYSGRADWSYFRRVKEAV-DVPVIGNGDVRTARDAVTMLAETGCDGVMVGRGA 232 Query: 237 YQNPGILAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 NP +L A+ + G + + + + + T + + +H+ F Sbjct: 233 VGNPWLLTAIRAVLEGRPEPPPVDVRTRMTMACRHLKLLVELKGETTAVKEMRKHLACYF 292 Query: 293 QGIPGARQWRRYLSENAHKAGADINVLEHALK 324 +G+PGA + R+ ++ A I ++ L+ Sbjct: 293 RGLPGAARLRQQINTL-TTAAEVIAAIKAYLR 323 >UniRef50_C1F4Z7 Putative tRNA-dihydrouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4Z7_ACIC5 Length = 398 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 90/368 (24%), Positives = 154/368 (41%), Gaps = 57/368 (15%) Query: 1 MPEKTDVH---------WSGRFSVAPMLDWTDRHCRYFLR-------------------- 31 MPE V + +APM TD R F+R Sbjct: 13 MPEGVRVPASMDIGGVVVAPATVLAPMAGVTDTVFRRFIRNASLFAEGGAGAANVDREVT 72 Query: 32 -LLSRNTLLYTEMVTTGAIIH----GKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAE 86 S L+ TE + + + YL + E+EHP+A QL GS+P LA+ A++ E Sbjct: 73 NQQSGCGLIMTEFTSADGLSKMRESKRKRYLTFYEDEHPIAAQLFGSNPETLAEGARIVE 132 Query: 87 ARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQ 146 G+D ++LN+GCP+ RV G+ L+ + L+A +A+R V IP TVK R+G +DQ Sbjct: 133 DTGFDMVDLNLGCPAKRVVACNGGSGLLRDLPLIAKIFEAVRGAVKIPFTVKFRLGWNDQ 192 Query: 147 DSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHL 206 +C + ++ + +HAR +E + + ++K + Sbjct: 193 ---HIICVPLARLAEESGLNAVSLHART--------REQGYSGQARWEHIAEVKDAV-RI 240 Query: 207 TMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAVDREIFGS---SDTDADPV 261 + NG +++ E+A A + DGVM+GR A NP I + + ++AD Sbjct: 241 PVIGNGDVRTPEDACALVAKTGCDGVMIGRAAPANPWIFRQIAQYTATGRYDEPSEADRY 300 Query: 262 AVVRAMYPYI-----ERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADI 316 ++R + + E E + G + + G+PG R+ + E + Sbjct: 301 QMIRTYFEMLLDEGREDEHASRAAEGKMKQFASWFTHGVPGGAGLRKSIYEAKTGPK-IL 359 Query: 317 NVLEHALK 324 + +E + Sbjct: 360 DAVERFFE 367 >UniRef50_A8ZYE4 Putative TIM-barrel protein, nifR3 family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYE4_DESOH Length = 326 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 79/332 (23%), Positives = 133/332 (40%), Gaps = 29/332 (8%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEE 63 V +GR +AP+ TD R + L+Y+EMV++ + + L + EE Sbjct: 6 VFLAGRTILAPLAGITDAPFRRLAKAAGC-ALVYSEMVSSHGLFYQSEKTGAMLRTTPEE 64 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P A+Q+ G PA + + A + +A G I++N GC ++ GA LM + L A+ Sbjct: 65 APFAVQIFGGKPAVMGRAAAMVQASGAHMIDINFGCSVKKILKSGAGAALMKDLPLAAEV 124 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 ++A+RD VSIP+T+K R G + S F + ++ +H R A Sbjct: 125 IQAVRDAVSIPLTIKMRSGWNPDGSDAF---HLAEIAEARGVNAVALHPRTAT------- 174 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPG 241 D+ + LK+ L + NG I E+A+ L D VMVGR A P Sbjct: 175 -QGFGGTADWSLIAALKQR-TGLPVIGNGDIVLPEDARRMLDQTGCDAVMVGRAAIGAPW 232 Query: 242 ILAAVDREIFGSSDTDAD---PVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 I ++ + G + V+ + + + + + +P Sbjct: 233 IFKQINACLAGKPVVEPSLEHRFEVMSEYINAMVAHYGEDLACRVMRSRLGWFTRAMPHG 292 Query: 299 RQWRRYLSENAHKAGADINVLEHALKLVADKR 330 +R + K + L V+D R Sbjct: 293 TLFRESIRRIETK--------DQVLAAVSDYR 316 >UniRef50_Q5M689 Possible transcriptional regulator n=25 Tax=Streptococcus RepID=Q5M689_STRT2 Length = 350 Score = 276 bits (706), Expect = 7e-73, Method: Composition-based stats. Identities = 68/321 (21%), Positives = 124/321 (38%), Gaps = 23/321 (7%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYS 60 +V R +APM T+ R + S L+ EM++ +++ L Sbjct: 35 IGNVEIPHRTVLAPMAGVTNSAFRTIAKEFSA-GLVVMEMISEKGLLYNNEKTLHMLHID 93 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAE-ARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 E EHP+++QL G D L + A + D +++N+GCP ++V GA + + Sbjct: 94 ENEHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLKDPDK 153 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 + VK + V+ IP+TVK R G D D L + +H R Sbjct: 154 IYHIVKEVTSVLDIPLTVKMRTGWSDSD----LAVENALAAESAGVSALAMHGRT----- 204 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAY 237 +E D+ + ++ + + NG ++++++AK ++ +D VMVGR A Sbjct: 205 ---REQMYTGHCDHETLARVAKAITKIPFIGNGDVRNVQDAKLMIEELGVDAVMVGRAAM 261 Query: 238 QNPGILAAVDREIFGSSDTDADP----VAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 NP I ++ + P + + + + + + Sbjct: 262 NNPYIFTQINHFFETGEELPDLPFDKKLDIAEDHLKRLVDLKGEMIAVREFRGLAPHYLR 321 Query: 294 GIPGARQWRRYLSENAHKAGA 314 G GA + R +S A Sbjct: 322 GTAGAAKVRGEVSRAESVAQV 342 >UniRef50_Q0BSS6 tRNA-dihydrouridine synthase n=15 Tax=Alphaproteobacteria RepID=Q0BSS6_GRABC Length = 370 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 139/335 (41%), Gaps = 27/335 (8%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPV 66 V +APM TD R R + ++ +EM+ + A++ L +E P Sbjct: 37 VTIETPVILAPMSGVTDLPFRMLAREMGT-GMVVSEMIASWAMVRENKTTLRMAEPAGPP 95 Query: 67 ------ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRV-QNGMFGACLMGNAQL 119 ALQL G DP A+A+ A++A +G + I++N GCP +V G+ LM + Sbjct: 96 SPGSPNALQLAGCDPEAMAEAARIAIDKGAELIDINFGCPVKKVAVGQSAGSALMRDEVT 155 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 A ++A VS+PVT+K R+G D Q ++ M +H R Sbjct: 156 AAKILEATVKAVSVPVTLKMRMGWDHQSLNAPAL---AKIAEASGIRMITVHGRT----- 207 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA--KAHLQHMDGVMVGREAY 237 ++ D+ V ++K+ L + +NG I+++E+A + DGVMVGR Y Sbjct: 208 ---RQQFYEGKADWAFVARVKQA-TSLPVIVNGDIQTVEQAAEARAISGADGVMVGRGCY 263 Query: 238 QNPGILAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 P V + ++ ++ Y + R + +H+ Sbjct: 264 GRPWFPRQVAAYLRDGVHIPEPPLSERKQILLNHYDAMLRCFGTDAGMRLARKHVSWYTT 323 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALKLVAD 328 G+ G+ +R ++ A + + +++ + + Sbjct: 324 GLHGSAAFRATVNRLADPSQV-LALIDTFFDPLIE 357 >UniRef50_Q1NXZ7 Dihydrouridine synthase TIM-barrel protein nifR3 n=3 Tax=Deltaproteobacteria RepID=Q1NXZ7_9DELT Length = 313 Score = 276 bits (706), Expect = 9e-73, Method: Composition-based stats. Identities = 72/315 (22%), Positives = 121/315 (38%), Gaps = 24/315 (7%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVA 67 AP+ ++D R R L Y+EM++ ++ + + LA + E P+ Sbjct: 13 PPLVAAPLAGYSDLPFRLLCREYGA-GLCYSEMLSCHGLVRRQPATIEMLATTAAERPLL 71 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +QL G++P + + A + D I++N+GCP +V GA LM + +L A A+ Sbjct: 72 MQLFGAEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKGAGAALMRDPELAAAITGAV 131 Query: 128 -RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 +PVTVK R G + + + IHAR + Sbjct: 132 TAAAGDLPVTVKIRSGWNHKQINA---PDFARLLVAHGAAAVTIHART--------WSDG 180 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILA 244 D+ + +KR + + NG I S E+A A + DGVM+GR A P + Sbjct: 181 FTGRADWAVIAAVKRAVS-VPVIGNGDIGSYEQALAMMAATGCDGVMIGRGALGAPWVFT 239 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRY 304 + A +A R I + + F+ IPG + RR Sbjct: 240 ----PGAEQNPPLAQRLAAARRHLELIRHWRPADNPAR-VRNQLGRYFKKIPGGARLRRQ 294 Query: 305 LSENAHKAGADINVL 319 + ++ +L Sbjct: 295 IYDHNGSIDQLEQLL 309 >UniRef50_A6U9Y2 Dihydrouridine synthase DuS n=3 Tax=Rhizobiaceae RepID=A6U9Y2_SINMW Length = 385 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 165/364 (45%), Positives = 212/364 (58%), Gaps = 42/364 (11%) Query: 4 KTDVHWSGRFS-VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-KGDYLAYSE 61 K +++G VAPM+DWTDRH R+F R+LSR+ LLYTEM+ A++ G + L + Sbjct: 12 KRTAYFNGPVFAVAPMIDWTDRHYRFFARVLSRHALLYTEMIVADAVLRGDRAKLLGHDA 71 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 EHPVALQLGG+DP +A+ A++ EA GYDEIN+NVGCPSDRVQ+G FGACLM LVA Sbjct: 72 SEHPVALQLGGNDPVKMAEAARIGEAYGYDEINMNVGCPSDRVQSGTFGACLMQEPALVA 131 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 DC+ AM+ V IPVTVK RIG+DDQD L D + G + +HARKAWL GLS Sbjct: 132 DCIAAMKAAVEIPVTVKCRIGVDDQDPEVALRDLVKCAKDAGT-DGVWVHARKAWLQGLS 190 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ---------------- 225 P+ENREIPPLDY V++LK + L + INGG++ L++A +HL Sbjct: 191 PRENREIPPLDYGLVHRLKAENESLFIGINGGLQGLDQALSHLDPRSLPAGEAMKAATEI 250 Query: 226 ----HMDGVMVGREAYQNPGILAAVDREIFGS------SDTDAD-------------PVA 262 +DGVM+GR AY + G+L A D TD D Sbjct: 251 KSGAPLDGVMLGRAAYHDSGLLTAADGYFRHPLTGAAAVPTDPDGFSDRDHNLSLEFWSG 310 Query: 263 VVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHA 322 V M Y + G L H+TRHM+GLFQG PGAR++R+ LS A + A V+ A Sbjct: 311 VRDVMEDYAAAHIENGGRLIHVTRHMVGLFQGWPGARRYRQILSTRATRKDAGPEVIHTA 370 Query: 323 LKLV 326 V Sbjct: 371 FDAV 374 >UniRef50_C9LMP9 tRNA-dihydrouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMP9_9FIRM Length = 330 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 81/322 (25%), Positives = 135/322 (41%), Gaps = 22/322 (6%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLA 58 P ++ G +APM +D R R + L EMV+ + + L Sbjct: 4 PRIGNIQLDGFALLAPMAGVSDLAYRVIARKMGA-ALTTAEMVSAKGLYYHNEKTKDMLK 62 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 +EEEHPV+LQL GSDPA +A AK+ E G D +++N+GCP +V G+ LM N Sbjct: 63 IAEEEHPVSLQLFGSDPAVMALGAKVMEKAGADIVDINMGCPMQKVVKNGDGSALMKNVT 122 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 L A+ + A+ V IPVT+K R+G +G +H R Sbjct: 123 LAAEIISAVTAAVKIPVTIKMRLGWSRDTINAVELAMAAESAGA---AAITVHGRT---- 175 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREA 236 +E+ + D+ + ++ + + NG + AKA ++ V +GR A Sbjct: 176 ----REDFYMGTADWREIKKVVDAV-RIPVIGNGDVGDGPAAKALMEETGCAAVAIGRAA 230 Query: 237 YQNPGILAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 + NP + AV+ + + + +A+ R + E + + + H F Sbjct: 231 WGNPWVFGAVNTYLETGEILPGPSWEERLAMARKHLHGLCVEKGERIAVREMRAHASRYF 290 Query: 293 QGIPGARQWRRYLSENAHKAGA 314 G+P A RR + + + Sbjct: 291 HGLPKATVLRREIMKALTEEEF 312 >UniRef50_D0L1E3 TIM-barrel protein, nifR3 family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1E3_HALNC Length = 333 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 75/325 (23%), Positives = 131/325 (40%), Gaps = 22/325 (6%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY---SEEE 63 V ++APM +DR R R L+ TEM++ + S + Sbjct: 20 VIIDPPLALAPMAGVSDRPFRQLCREYGA-GLVVTEMMSAKPELQSSAKSRLRQIDSNDI 78 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P A+QL G+DP LA+ A+ A ++G I+LN+GCP+ +V G+ LM VA Sbjct: 79 EPRAVQLLGNDPFELAEAARFAVSQGAQLIDLNLGCPAKKVCKRAAGSALMAEPDTVARL 138 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 ++A+ V PV++K R G D + I ++ M IH R + Sbjct: 139 LEALVAAVDCPVSLKMRTGPDREWRNAVA---IAKIAENAGISMLSIHGRT--------R 187 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPG 241 +R +Y + ++ L + NG I + ++A+ + G+MVGR A+ P Sbjct: 188 ADRYEGEAEYDTIAEVVAAV-DLPVFANGDITTPQKARQVIAHTGAAGIMVGRGAFGQPW 246 Query: 242 ILAAVDREIFGSS-DTDADPVAV---VRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 I +A+ E+ G + D ++ + I + +H+ + Sbjct: 247 IFSALKAELTGQPLPSPPDRAERVVAIKKQFEKIYHHYGDSLGIRIARKHLGWYAASLEL 306 Query: 298 ARQWRRYLSENAHKAGADINVLEHA 322 + R + H + +HA Sbjct: 307 GEEDRAVFNRFEHPEQQRQWLAQHA 331 >UniRef50_C1ZDL9 Putative TIM-barrel protein, nifR3 family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDL9_PLALI Length = 385 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 127/325 (39%), Gaps = 20/325 (6%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEEEHP 65 R ++P+ +T+ R + L L T++V ++ G L + P Sbjct: 46 LPFRTLLSPLAGFTNLPFRRVVHELGGLGLGTTDLVNARGLLAGSEKTLRLIATHPIDRP 105 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 A+Q+ G + + + A+L EARG D I++N+GCP +V GA LM +A + VK Sbjct: 106 FAVQIFGGEASIMRDAAQLLEARGVDSIDINMGCPVLKVVKTGAGASLMCHADAATELVK 165 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+ + V +PVTVK R+G D + + IH R + Sbjct: 166 AVVEAVHVPVTVKMRLGWDAS---QLTAPRFAREFEQVGVAAVAIHGRT--------RAQ 214 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGIL 243 ++ + Q+ + + NG I+S+++A A + +GR A NP I Sbjct: 215 GFSGTVNRDGIRQVVEAVDSIPVIANGDIRSVDDAIAMYDETGCQAISIGRGALANPWIF 274 Query: 244 AAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGAR 299 + A D + ++R + Y++ + + T + + + + Sbjct: 275 RQLTEWETTGDWAPAGSFNDRLLLMRRQFRYLQEWVGEETAVSAFRKMSHWYTKAMRVGP 334 Query: 300 QWRRYLSENAHKAGADINVLEHALK 324 R + + + E AL Sbjct: 335 ALRHAVQSAKTGEEFEQALQEIALA 359 >UniRef50_B1ZWU6 TIM-barrel protein, nifR3 family n=6 Tax=Verrucomicrobia RepID=B1ZWU6_OPITP Length = 370 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 64/324 (19%), Positives = 126/324 (38%), Gaps = 20/324 (6%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY---SEEEH 64 S ++P+ +T+ R LR L + T++V +++ L S E+ Sbjct: 7 ELSSNLFLSPLAGYTNLPFRLTLRELGGLGWVTTDLVNARSLLERNPAALKLVASSAEDR 66 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+++QL GS P + A++ E G +++N+GCP +V G+ +M A V Sbjct: 67 PMSIQLFGSVPTEMRDAARICEDLGAQAVDINMGCPVRKVVRVGGGSAMMTELNQTAALV 126 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 + M + V IPVT K R+G DD++ + V +H R + Sbjct: 127 RGMIEAVKIPVTAKMRLGWDDEN---LTAPDLARVLEDAGVAAVFVHGRT--------RA 175 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGI 242 ++ + + + + + NG + + E A+A ++ GV +GR A+ +P I Sbjct: 176 QGFSGTVNLAGIAAVVQAVKRIPVIGNGDVTTPEAARAMIEQTGCAGVSIGRGAFYDPWI 235 Query: 243 LAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 + + V V+R + + + + A Sbjct: 236 FRRTHHLLTSGELWPEPGFDERVRVMRRHFERYCEFYGEEKGPRLFRKVAPWYAKRFGPA 295 Query: 299 RQWRRYLSENAHKAGADINVLEHA 322 + ++R + +A D + E+ Sbjct: 296 KPFKRRIITIDSRADFDAALAEYI 319 >UniRef50_C7RGQ7 TIM-barrel protein, nifR3 family n=4 Tax=Anaerococcus RepID=C7RGQ7_ANAPD Length = 326 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 67/328 (20%), Positives = 132/328 (40%), Gaps = 24/328 (7%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI---IHGKGDYLAYSEEEHPVA 67 +APM TD R + +TEMV+ A+ + + + E Sbjct: 8 NEIMLAPMAGITDSAFRQICEENGCDK-TFTEMVSVNALDFNNRATEEIMYTAYSEKNCN 66 Query: 68 LQLGGSDPAALAQCAK--LAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +Q+ G D + + K + ++EI+ N+GCP+ ++ N G+ LM + + V + K Sbjct: 67 IQIFGKDCDIIERVIKDKINPREDFEEISFNMGCPAPKIFNNGQGSALMRDVKKVYEIGK 126 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 +++ V VK R+GIDD + + I+H R ++ Sbjct: 127 CLKESTDKIVNVKIRMGIDDDSVNYIE---VGKALEDSGIDYVILHGRT--------RKQ 175 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGIL 243 + ++ + +LK + + NG + S+++ K L DGVM+ R A NP I Sbjct: 176 QYSGKANWQAIRKLKETLS-IPVIANGDVFSVKDYKDILDETGADGVMIARGAMGNPFIF 234 Query: 244 AAVDREIFGSSDTDADPVAVV---RAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 + I G + ++ + Y + + + + +H+ +G+P A Sbjct: 235 RQIKDYIQGKETSPISYEDILATIKRQYELSLKYKKEKLVINQMRKHVGWYIKGLPQAAS 294 Query: 301 WRRYLSENAHKAGADINVLEHALKLVAD 328 +R +++ ++LE K + D Sbjct: 295 YRDRVNKLKTSEE-IFDLLEEYRKFLED 321 >UniRef50_B1GZV7 Putative tRNA-dihydrouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZV7_UNCTG Length = 320 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 69/326 (21%), Positives = 131/326 (40%), Gaps = 22/326 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEE 62 ++ + +APM TD R + L+YT M++ A++ L +E+ Sbjct: 8 NIEFDNNIILAPMAGITDLPLRRLAKS-GGAGLVYTGMLSARALVRSDEKTEKLLKTTED 66 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 E PVA Q+ GS +A+ AK+ G D I++N+GCP +V GA L+ + +LV++ Sbjct: 67 ERPVAAQIFGSAAHIMAEAAKIVRNSGADIIDVNLGCPVKKVAKAGAGAKLLADEKLVSE 126 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 ++++ V +PVTVK R G+ + + I V+ +M +HAR A Sbjct: 127 ILESVVKSVDVPVTVKIRTGLLPEHN---AATEIIKVAYNCGIKMVAVHARPA------- 176 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNP 240 D +++ + + NGG+ + A L + G+M+GR A N Sbjct: 177 -SQGHSGFPDL-KLFAASCAGAKIPVIANGGVVDEKTAADFLRVPNCAGIMIGRGALGNY 234 Query: 241 GILAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 I ++ + V ++ Y + + + + +P Sbjct: 235 SIFKRLEAFFSSGKKLPLPSKTEKVEWLKKHVQYSVEYYGEKKGFVVMKKVFHYYVKDLP 294 Query: 297 GARQWRRYLSENAHKAGADINVLEHA 322 A + R ++ +++ Sbjct: 295 NAAKIRDIFNKKIVTLSDFNELIKLF 320 >UniRef50_D2NNX0 tRNA-dihydrouridine synthase n=3 Tax=Actinobacteridae RepID=D2NNX0_9MICC Length = 442 Score = 273 bits (698), Expect = 8e-72, Method: Composition-based stats. Identities = 71/325 (21%), Positives = 122/325 (37%), Gaps = 26/325 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEE 62 + +APM T++ R L TEMVT A++ K + + + + Sbjct: 71 KLTVDTPVVLAPMAGVTNKAFRRLCSEYGG-GLYVTEMVTARALVERKPESMRIIEHDPD 129 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E ++Q+ G D + + ++ D I+LN GCP+ +V GA L L Sbjct: 130 EKIRSIQIYGVDAVNVGKAVRMVVEEDRADHIDLNFGCPAPKVTRRGGGAALPWKTDLFT 189 Query: 122 DCVKAMRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 V+ IP+T+K R GIDD ++ +H R A Sbjct: 190 AIVQTAVKEASRNDIPLTIKMRKGIDDDHITFLE---SAKIARDAGVAAIALHGRTA--- 243 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREA 236 D+ + QL+ P + + NG I S E+A ++ +DGV++GR Sbjct: 244 -----AQHYSGKADWDSIAQLRELIPDVPILGNGDIFSAEDAVRMVEQTGVDGVVIGRGC 298 Query: 237 YQNPGILAAVDREIFGSSDTDADPVA-----VVRAMYPYIERELSQGTYLGHITRHMLGL 291 P + + GSS+ + + R +E + L I +H+ Sbjct: 299 QGRPWLFGDLQNAFEGSSERIRPTLTEVSDMIYRHAELLVETFGDETRGLREIRKHVAWY 358 Query: 292 FQGIPGARQWRRYLSENAHKAGADI 316 F+G P + R +++ A Sbjct: 359 FKGYPVGGELRAKMAQVPDLATFRE 383 >UniRef50_Q31II6 Dihydrouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31II6_THICR Length = 320 Score = 272 bits (697), Expect = 8e-72, Method: Composition-based stats. Identities = 75/325 (23%), Positives = 137/325 (42%), Gaps = 23/325 (7%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE---EEHPVA 67 ++APM TDR R R + +EMV + + E P Sbjct: 10 PTIALAPMAGITDRVYRDICRESGA-SYAVSEMVASKKQLRESAKSSTRHADKTETSPRI 68 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +QL G+ P L A +++G D I+LN+GCP+ +V + G+ LMG + VAD K++ Sbjct: 69 VQLLGTHPEELVDAALWQQSQGADIIDLNMGCPAKKVCDVAAGSALMGQPERVADIFKSL 128 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + + +PVTVK R G D + I ++ + + IH R + ++ Sbjct: 129 TEAIDLPVTVKIRTGTDVDNINAVE---IAKLAQELGLKAITIHGRT--------RADKF 177 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAYQNPGILAA 245 +Y + +K+ + + NG I S +EA+ L++ DG+M+GR A P I Sbjct: 178 NGQAEYDTIKAVKQAV-DIPVIANGDICSPKEAQFVLKYTGSDGIMIGRAAQGYPWIFRE 236 Query: 246 VDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 + + + A+ V+ + +E + +H+ Q +P + Sbjct: 237 IAHFLKTGDCLPSPSFAEFQQVMTRHFSELEILYGEHLGHKIARKHLGWYSQYLPNGTEL 296 Query: 302 RRYLSENAHKAGADINVLEHALKLV 326 R+ + + A +N++ H + Sbjct: 297 RKRFNRLENT-QAQLNLINHYFDTL 320 >UniRef50_C6NVP5 tRNA-dihydrouridine synthase A n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVP5_9GAMM Length = 335 Score = 272 bits (697), Expect = 8e-72, Method: Composition-based stats. Identities = 138/295 (46%), Positives = 178/295 (60%), Gaps = 6/295 (2%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK--GDYLAYSEEEHPVALQL 70 SVAPMLDWTDRHCRYFLRL+ + +LYTEM+ T A++ GK YLA++ E P+ LQL Sbjct: 17 LSVAPMLDWTDRHCRYFLRLICPSCVLYTEMIHTSALVLGKSPERYLAFTAAEQPLVLQL 76 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG DP A+A+ A LA GY +NLNVGCPS RVQ G FGACLM LV + + A+ Sbjct: 77 GGDDPEAMARAAILARDYGYTGVNLNVGCPSTRVQRGNFGACLMLTPALVREIIDAL-AG 135 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 +PV+VK R+G+D Q+ Y L DF+ V+ G C F++HAR AWL GLSP NR IPP Sbjct: 136 SGLPVSVKHRLGLDRQEDYGQLADFVAQVA-AGSCRHFVVHARNAWLRGLSPAANRTIPP 194 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L + V +LK DFP L +NGG+ ++ + +A +DGVM+GR AY P + Sbjct: 195 LRWDWVARLKEDFPGLRFELNGGLDTVPKVEAQWSRVDGVMIGRAAYHRP-LFLTELELA 253 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL 305 G A V A+ Y E +TRH+ G F G PGA WR++L Sbjct: 254 LGRRQAPARRAEVFAALLAYTEDW-GAALPAPRLTRHLHGFFFGEPGANAWRQFL 307 >UniRef50_Q91XI1 tRNA-dihydrouridine synthase 3-like n=12 Tax=Chordata RepID=DUS3L_MOUSE Length = 637 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 65/296 (21%), Positives = 117/296 (39%), Gaps = 19/296 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 EK + SG+ +AP+ + R + + + EM ++ G+ Sbjct: 284 EKKRLDISGKLYLAPLTTCGNLPFRRICKRFGAD-VTCGEMAVCTNLLQGQMSEWALLKR 342 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +QL G+ P + +CA+L D +++NVGCP D V G LM + Sbjct: 343 HPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSA 402 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 V+ + V+ +P+TVK R G+ Q+ + + G + +H R Sbjct: 403 KFQQIVRGVNGVLDVPLTVKMRTGV--QERVSLAHRLLPELRDWG-VALVTLHGR----- 454 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA-KAHLQHMDGVMVGREAY 237 +E R D+P + Q + + + NG I S E+A A + G+MV R A Sbjct: 455 ---SREQRYTRLADWPYIEQCAKVASPMPLFGNGDILSFEDANCAMQTGVAGIMVARGAL 511 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P + + + + ++ + ++R Y +E S + R +L Sbjct: 512 LKPWLFTEIKEQRHW-DISSSERLDILRDFTHYGLEHWGSDTQGVERTRRFLLEWL 566 >UniRef50_C5WE57 tRNA-dihydrouridine synthase n=42 Tax=Streptococcus RepID=C5WE57_STRDG Length = 354 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 66/322 (20%), Positives = 124/322 (38%), Gaps = 23/322 (7%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYS 60 DV R +APM T+ R + L+ EM++ +++ L Sbjct: 39 IGDVEIPHRTVLAPMAGVTNSAFRTIAKEFGA-GLVVMEMISEKGLLYNNEKTLHMLHID 97 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAE-ARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 E EHP+++QL G D L + A + D +++N+GCP ++V GA + + Sbjct: 98 ENEHPMSIQLFGGDAEGLKRAADFIQTNTKADIVDINMGCPVNKVVKNEAGAKWLRDPDK 157 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 + VK + V+ IP+TVK R G D L + +H R Sbjct: 158 IYHIVKEVTSVLDIPLTVKMRTGWADSS----LAVENALAAESAGVSALAMHGRT----- 208 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAY 237 +E D+ + ++ + + NG ++S+++AK ++ +D VM+GR A Sbjct: 209 ---REQMYTGTCDHETLARVSKAITKIPFIGNGDVRSVQDAKFMIEEIGVDAVMIGRAAM 265 Query: 238 QNPGILAAVDREIFGSSDTDADP----VAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 NP + ++ + P + + + + + + + Sbjct: 266 NNPYLFTQINHFFETGQELPDLPFAKKLDIAKDHLKRLINLKGETIAVREFRGLAPHYLR 325 Query: 294 GIPGARQWRRYLSENAHKAGAD 315 G GA + R +S A + Sbjct: 326 GTAGAAKVRGAVSRAETLAEVE 347 >UniRef50_A8MRX7 Uncharacterized protein At3g63510.2 n=5 Tax=Arabidopsis thaliana RepID=A8MRX7_ARATH Length = 386 Score = 272 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 127/332 (38%), Positives = 181/332 (54%), Gaps = 14/332 (4%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEEE 63 + P +D H R RL++++ LYTEM+ ++H + +LA+S ++ Sbjct: 19 PPLRLPIFLLP----SDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQ 74 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQLVAD 122 HP+ LQLGGS+ LA+ AKL++A GYDEINLN GCPS +V FG LM +LV + Sbjct: 75 HPIVLQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGE 134 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 + A+ ++PVTVK RIG+D+ DSY+ LCDFI VS FI+H+RKA L G+SP Sbjct: 135 AMSAIAANTNVPVTVKCRIGVDNHDSYDELCDFIYKVSTLSPTRHFIVHSRKALLGGISP 194 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL-QHMDGVMVGREAYQNPG 241 +NR IPPL Y Y L RDFP L +INGGI S+ + A L + GVMVGR AY NP Sbjct: 195 ADNRRIPPLKYEYYYALVRDFPDLRFTINGGITSVSKVNAALKEGAHGVMVGRAAYNNPW 254 Query: 242 -ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQ----GTYLGHITRHMLGLFQGIP 296 L VD ++G + V+ Y + L + + + +L LF Sbjct: 255 QTLGQVDTAVYGVPSSGLTRRQVLEQYQVYGDSVLGTHGNGRPNVRDLVKPLLNLFHSEN 314 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVAD 328 G W+R + + ++LE +L+ + D Sbjct: 315 GNSLWKRRADAAFKECRSVGSLLEESLRAIPD 346 >UniRef50_D2U2K4 tRNA-dihydrouridine synthase B n=1 Tax=Arsenophonus nasoniae RepID=D2U2K4_9ENTR Length = 458 Score = 272 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 133/326 (40%), Gaps = 23/326 (7%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 64 APM TDR R + + +EM+++ + + +S+E Sbjct: 36 QIKNCLVAAPMAGITDRPFRSLCYSMGA-GMTVSEMLSSNPQVWKTDKSRLRMIHSDELG 94 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 ++Q+ GSDP +A A++ A G I++N+GCP+ +V + G+ L+ +L+ + Sbjct: 95 IRSVQIAGSDPDEMATAARINVANGAQIIDINMGCPAKKVNRKLAGSALLRYPELIEKIL 154 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 A+ + V +PVT+K R G ++ C I ++ + + IH R + Sbjct: 155 LAVVNAVDVPVTLKVRTGWSPEERN---CIKIAQLAERCGIQAVTIHGRT--------RA 203 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGI 242 +Y + K++ + + NG I +A+A L D +M+GR A P I Sbjct: 204 CLFNGAAEYDSIRAAKQNVT-IPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWI 262 Query: 243 LAAVDREIFGSSDTDADPVA----VVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 + + P+A +++A + QG + +H+ + Sbjct: 263 FREIQHYLETGELLPPMPIAEVQCLMQAHVKELHDFYGQGKGIRIARKHVSWYLREHAPD 322 Query: 299 RQWRRYLSENAHKAGADINVLEHALK 324 Q+RR + A + VLE + Sbjct: 323 DQFRRTFNT-IEDASEQLEVLEAYFE 347 >UniRef50_UPI000186DAF4 tRNA-dihydrouridine synthase, putative n=2 Tax=Eumetazoa RepID=UPI000186DAF4 Length = 557 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 71/337 (21%), Positives = 140/337 (41%), Gaps = 28/337 (8%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAY 59 EK ++W + ++P+ + R + + + +EM +++ G + + Sbjct: 201 EKKKINWKEKLYLSPLTTLGNLPFRRICKEFGAD-ITCSEMAMATSLLQGLKYEWALIKR 259 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E E +QL G++P + +CA+L E D I++N+GCP D V G+ L+ + Sbjct: 260 HESEDLFGIQLCGNNPFVMTKCAQLLEESTNVDYIDINLGCPIDLVYQKGGGSGLLRREK 319 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 ++ +K+M V+S+P+TVKTR G+ + I G + +H R Sbjct: 320 VLESVIKSMSKVMSLPLTVKTRTGVYADKNVA--HRLIPMFVDSG-VSLITVHGR----- 371 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH---MDGVMVGRE 235 +E R D+ + + + + + NG + S E+ L+ + GVMVGR Sbjct: 372 ---SREQRYTRTADWNYINECGKAASPIPVFGNGDVLSFEDYNRALKENNNVSGVMVGRG 428 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRH----MLG 290 A P I + + + ++ +++ Y ++ S + + + Sbjct: 429 ALYKPWIFKEIKEQ-KNWDISSSERFDIIKKFVNYGLDHWGSDTMGVELTRKFTLEWLSF 487 Query: 291 LFQGIPGARQWR--RYLSENAHKAGADINVLEHALKL 325 L++ IP R + ++E K N LE + Sbjct: 488 LYRYIPVGLLERPPQKINERPPKY-FGRNDLETLMAS 523 >UniRef50_B3RKU4 Putative uncharacterized protein n=2 Tax=Metazoa RepID=B3RKU4_TRIAD Length = 581 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 67/297 (22%), Positives = 119/297 (40%), Gaps = 20/297 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 EK +++S + +AP+ + R + + + +EM ++ G+ Sbjct: 227 EKKQINFSNKLFLAPLTTVGNLPFRRICKTFGAD-VTCSEMALCTNLLQGQQSEWALVKR 285 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E E LQ+ G+ P LA+ ++ R D ++LN+GCP D V + G+ LMG A Sbjct: 286 HESEDLFGLQVCGAWPDTLARLSEYINDRVNVDFVDLNLGCPIDLVFHQGAGSALMGRAN 345 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + V M ++S+P+TVK R GI + S I + G + +H R Sbjct: 346 KLQQIVTGMSSILSVPLTVKLRTGILAKKSTA--HKLIPQIREWG-ASLVTLHGR----- 397 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD--GVMVGREA 236 +E R D+ + + + + NG I S E+ H+ + + GVM+ R A Sbjct: 398 ---SREQRYTKLADWSYINECATAADPMPLIGNGDILSFEDYLEHMNNTNVAGVMIARGA 454 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P + + + + +R Y +E S + R +L Sbjct: 455 LIKPWLFTEIKERRHW-DISANERFEFLRKYVNYGLEHWGSDSLGVEKTRRFLLEWL 510 >UniRef50_Q9FI41 Emb|CAB87804.1 n=16 Tax=Embryophyta RepID=Q9FI41_ARATH Length = 387 Score = 270 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 135/330 (40%), Positives = 181/330 (54%), Gaps = 10/330 (3%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEEHPV 66 FS+APM+ WTD H R RL++++ LYTEM+ I++ +LA+S ++HP+ Sbjct: 9 PPLFSIAPMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAFSPDQHPI 68 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ-NGMFGACLMGNAQLVADCVK 125 LQ+GG + LA+ +LA A YDEIN N GCPS +V G FGA LM + + V + + Sbjct: 69 VLQIGGRNLENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKFVGEAMS 128 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 + + VTVK RIG+DD DSY LCDFI+ VS + FIIH+RKA LSGLSP +N Sbjct: 129 VIAANTNAAVTVKCRIGVDDHDSYNELCDFIHIVSSLSPTKHFIIHSRKALLSGLSPSDN 188 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ-HMDGVMVGREAYQNPG-IL 243 R IPPL Y + L RDFP L +INGGI S+ EA A L+ GVM+GR Y NP IL Sbjct: 189 RRIPPLKYEFFFALLRDFPDLKFTINGGINSVVEADAALRSGAHGVMLGRAVYYNPWHIL 248 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQ----GTYLGHITRHMLGLFQGIPGAR 299 VD ++GS + V+ Y E L + L I R ++ LF G Sbjct: 249 GHVDTVVYGSPSSGITRRQVLEKYKLYGESVLGKYGKGRPNLRDIVRPLINLFHSESGNG 308 Query: 300 QWRRYLSENAHKAGADINVLEHALKLVADK 329 QW+R + L+ L + D Sbjct: 309 QWKRRTDAALLHCTTLQSFLDEVLPAIPDY 338 >UniRef50_B6W908 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W908_9FIRM Length = 321 Score = 270 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 66/336 (19%), Positives = 132/336 (39%), Gaps = 32/336 (9%) Query: 6 DVHWSGR-FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSE 61 + +AP+ +D R + +TEMV+ A+ + L SE Sbjct: 2 REQLKNKQIMLAPLAGVSDVGFRLISERYGADK-TFTEMVSVNALYYDNKKTNDLLFISE 60 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEAR--GYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 E +QL GS P + + K EI+ N+GCP ++ G+ LM N +L Sbjct: 61 NEKNCNIQLFGSKPEVIEKVIKDKINYIEKSKEISFNMGCPVAKITKNGEGSQLMANPKL 120 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 V + K +R + +K R+GIDD+ I ++ + I+HAR Sbjct: 121 VEEICKTLRKSTDKKLNIKFRLGIDDKHINYLD---IGKIAQDTGIDYVILHART----- 172 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAY 237 K+ ++ + +LK + + + NG I S+E+ L DGVM+ R A Sbjct: 173 ---KDQMYSGNANWDHIRKLKENL-QIPVIANGDIFSVEDFINVIDLTKADGVMLARGAM 228 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIE---RELSQGTYLGHITRHMLGLFQG 294 NP + + I + P+ ++ + + + + + + +H+ +G Sbjct: 229 GNPFLFKEIKDYIKTGKYSKPSPIEIIDQLIDQYKLELKYKEEKLVVTQMRKHLSWYIKG 288 Query: 295 IPGARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 + + + R +++ ++ + + + + Sbjct: 289 LENSSKIRDLVNKLKT--------IDEVMDELENYK 316 >UniRef50_Q0F181 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F181_9PROT Length = 341 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 133/306 (43%), Gaps = 22/306 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE---EEHP 65 +APM TD R + L+ TEM+ + A+ G+ +E +EHP Sbjct: 16 IDNPLVLAPMAGITDLPFRRICKRFG-VGLMVTEMIASRAVDMGRERTERMAELGDDEHP 74 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 V++Q+ GSDP + + A+ A G D +++N+GCP ++ + G+ ++ + LVA + Sbjct: 75 VSIQIAGSDPEFVTEAARWAVGHGADFVDINMGCPVKKICKQVAGSAMLRDEALVARVLA 134 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+ V +PVT+K R G DDQ I ++ ++ +H R + Sbjct: 135 AVVAAVDVPVTLKIRTGWDDQSKN---VQNIARIAEDSGIQLLTVHGRT--------RAQ 183 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL 243 + + L + + + NG I E A+ ++ + DGVMVGR NP +L Sbjct: 184 MFHGHACWEDIG-LAKAAVSIPVIGNGDIVDAESAREMIRVSNCDGVMVGRAVQGNPWVL 242 Query: 244 AAVDREIFGSSDTD----ADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGAR 299 V I G A+ +V ++ T +H++ +G+ G+ Sbjct: 243 GEVHAAIAGLPIPPKPTAAERWLIVDEHMRHLVEHHGIRTASKLARKHVIWYSKGLHGSA 302 Query: 300 QWRRYL 305 ++R+ Sbjct: 303 EFRQSF 308 >UniRef50_Q1Q3Q8 Strongly similar to tRNA-dihydrouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3Q8_9BACT Length = 341 Score = 269 bits (689), Expect = 9e-71, Method: Composition-based stats. Identities = 66/317 (20%), Positives = 127/317 (40%), Gaps = 22/317 (6%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYS 60 ++ G +APM ++D R R ++ YTE+V+ I+ L + Sbjct: 26 IRNIPVYGELILAPMAGFSDMPYRLICRRFG-MSMSYTEVVSVSGIVWNNKKTFKLLDFK 84 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 EEE PV Q+ G+D + + K E G D I++N+GC + GA ++ + + Sbjct: 85 EEERPVTFQVVGNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGKGAGAGMLKHPSKI 144 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 + + +S+PVT K R+G D + + + + + +H R Sbjct: 145 SKMFNNLTGSLSVPVTGKIRLGWDHKTRNYIE---VARILEENGASLIAVHGRT------ 195 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQ 238 + D+ + ++K+ + + NG ++S+ + DGVM+GR A Sbjct: 196 --RSQYFSGAADWDAIAEVKQSV-KIPVIANGDVRSVADIAEIKKRTACDGVMIGRAAIG 252 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 +P I DRE S + + ++R ++ + +H + G+P A Sbjct: 253 HPWIFRYKDRENISGS----EKIEMIRYHLDCMKEYYGHAIGVVLFRKHAVKYIVGLPKA 308 Query: 299 RQWRRYLSENAHKAGAD 315 + R Y+ + Sbjct: 309 TELRPYIVRSKSAEDII 325 >UniRef50_C7NAG3 Dihydrouridine synthase DuS n=1 Tax=Leptotrichia buccalis C-1013-b RepID=C7NAG3_LEPBD Length = 331 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 127/328 (38%), Positives = 188/328 (57%), Gaps = 17/328 (5%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK--GDYLAYSEEEHPV 66 + S+APM+D TDR+ R F+R+++++ LLYTEM+T AII+ K L + + E+P+ Sbjct: 4 VKNKISIAPMVDRTDRNFRNFVRMINKDVLLYTEMITAQAIINTKDLNYLLGFDKIENPI 63 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 LQ+ ++P + K+AE YDEINLN+GCPSDRV M GA LM ++VAD +KA Sbjct: 64 VLQIAATNPKEAYEAVKIAEKYDYDEINLNIGCPSDRVSGNMMGAYLMAFPEVVADIIKA 123 Query: 127 MRDVVSIPVTVKTRIGIDDQ------------DSYEFLCDFINTVSGKGECEMFIIHARK 174 M+D + P+++K RIGID + D YE + +FIN ++ K +IIHAR Sbjct: 124 MKDATNKPISIKHRIGIDGKNILPDYFERTLLDKYEDMMNFIN-ITKKTGVNKYIIHARI 182 Query: 175 AWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGR 234 A L+GL PK+NR IPPL Y VY++K++ P L + ING IKS++E HL++ D VM+GR Sbjct: 183 AVLAGLDPKQNRSIPPLRYDEVYRVKKENPDLHIEINGEIKSVDEIDEHLKYTDSVMMGR 242 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 E Y NP IL + D + ++ M Y+E Q H GLF Sbjct: 243 EIYDNPMILTEFGKYY--GKDINITREEIIEKMIYYVENMERQNIRPHLFLMHTHGLFHN 300 Query: 295 IPGARQWRRYLSENAHKAGADINVLEHA 322 + G++ W+R ++ + +L Sbjct: 301 VRGSKFWKRAINNPKANSETLRKLLSEI 328 >UniRef50_Q9KV66 tRNA-dihydrouridine synthase B n=56 Tax=Proteobacteria RepID=DUSB_VIBCH Length = 322 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 70/334 (20%), Positives = 133/334 (39%), Gaps = 23/334 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAY 59 + + VAPM TDR R + +EM++ + + + Sbjct: 2 KIGNYQLKNNLIVAPMAGVTDRPFRELCLRYGA-GMAVSEMMSCNPALWKTAKSQNRMVH 60 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 E ++Q+ GSDP +A+ A+ + G I++N+GCP+ +V + G+ L+ + Sbjct: 61 EGESGIRSVQIAGSDPQLMAEAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLRYPDV 120 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 + D +KA+ + V++PVT+KTR G D + C I ++ + +H R Sbjct: 121 IEDILKAVVNAVNVPVTLKTRTGWD---TDNKNCLSIAQLAEDCGIQALALHGRT----- 172 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAY 237 + +Y + +K + + NG I S E+A+ L+ D +M+GR A Sbjct: 173 ---RACMYKGEAEYDSIKAVKAAVS-IPVIANGDIDSPEKARYVLEYTGADALMIGRPAQ 228 Query: 238 QNPGILAAVDREIFGSSDTDADPV----AVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 P I + + + P+ ++ + + + +H+ Q Sbjct: 229 GRPWIFQEIQHFLEHGTTMPELPISEVKDIMLGHVTALHQFYGEYLGPRIARKHVSWYLQ 288 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALKLVA 327 A +RR + A ++ LE VA Sbjct: 289 EHEQASAFRRTFN-AIETADQQLDALEGYFDNVA 321 >UniRef50_Q8PX79 NifR3-like protein n=3 Tax=Methanosarcina RepID=Q8PX79_METMA Length = 323 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 70/312 (22%), Positives = 122/312 (39%), Gaps = 23/312 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY--- 59 + SG +APM D T+ R R + L YTEM+ A+++ Sbjct: 7 KIGRTELSGNLLLAPMADVTNLAFRLLCRRYGAD-LTYTEMINVDALLNESRKSFIKGLS 65 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 SEE+ P +QL G P L + A E + I++N+GCP+ + G+ L+ + + Sbjct: 66 SEEDRPFGVQLVGGCPDKLKRAALFIEEEYRPEIIDVNMGCPARCITGAGCGSALLNSPE 125 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 LV + + + + PV+ K R+ ++ + E + K +H R A Sbjct: 126 LVYSIILELTESLDTPVSAKIRLLGREEKTLEIA-----RLIEKAGASAVTVHGRTA--- 177 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA--HLQHMDGVMVGREA 236 + + +K + + + NG +K E A+ L DG+M+GR A Sbjct: 178 -----AQMYSGNSNLEGIRAVKNELS-IPVIANGDVKDEESAERTLELTGCDGLMIGRAA 231 Query: 237 YQNPGILAAVDREIFGSSDTDAD-PVAVVRAMYPYIERELSQGTYLG-HITRHMLGLFQG 294 NP I + + AD P + YI ++ H +G Sbjct: 232 MGNPFIFKKIRHYLETGEKLGADKPFRQLEDFNSYISLLEEHNLLSSINLRMHAHWFTKG 291 Query: 295 IPGARQWRRYLS 306 + G+R R ++ Sbjct: 292 LRGSRHVREKIN 303 >UniRef50_B6KL93 Dihydrouridine synthase domain-containing protein n=3 Tax=Toxoplasma gondii RepID=B6KL93_TOXGO Length = 394 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 144/356 (40%), Positives = 191/356 (53%), Gaps = 36/356 (10%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHP 65 SVAPML T+ H R F+R +R L+TEMVT GAI++ L + EHP Sbjct: 11 GKPILSVAPMLAVTNTHFRNFMRCFTREAQLWTEMVTDGAILNNMDRLQQNLCLEDIEHP 70 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQLVADCV 124 + QLGGSDP LA+ KL E G+DEINLNVGCPS+RV + FGA LM + V D V Sbjct: 71 IVCQLGGSDPKTLAEAGKLIEKLGFDEINLNVGCPSNRVVSQGCFGAALMKTPETVRDIV 130 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +R V IPVTVKTRIG D DS + L +F+ TV G C FI+HARKAWL G+ PK+ Sbjct: 131 HEIRRHVQIPVTVKTRIGYDHCDSRDVLRNFVQTV-SAGGCRHFIVHARKAWLKGVDPKK 189 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH------------------ 226 NR +PPL Y RVY L FPHL S+NGG++S+++A Sbjct: 190 NRSVPPLLYGRVYDLCDQFPHLDFSLNGGVRSIQQAIDLAAGKWTDGTAEMDALLRRITR 249 Query: 227 ------MDGVMVGREAYQNPGILAAVDREIFG---SSDTDADPVAVVRAMYPYIERELSQ 277 + GVM+GR A +P ILA VD + +G + T V+ A YI+ Sbjct: 250 DKTVKPLRGVMLGRAASADPCILANVDTDFYGADANPPTSHSRRTVLEAYRNYIKPFAED 309 Query: 278 GTYLGH-ITRHMLGLFQGIPGARQWR---RYLSENAHKAGADINVLEHALKLVADK 329 G Y + + +LG+F G+PG R +R +L + + +L H + V + Sbjct: 310 GEYSHFALLKPVLGVFNGMPGNRLFRFTLDHLMRDQSRVWTAEEILAHTMAAVDET 365 >UniRef50_B7J4N8 tRNA-dihydrouridine synthase A n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7J4N8_ACIF2 Length = 330 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 148/298 (49%), Positives = 194/298 (65%), Gaps = 6/298 (2%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG--DYLAYSEEEHPVALQL 70 SVAPMLDWTDRHCRYFLRL+ + +LYTEMVTT A++ G+ +L +S EHP+ LQL Sbjct: 19 LSVAPMLDWTDRHCRYFLRLVCPSCVLYTEMVTTSALLLGRDPERFLEFSGAEHPLILQL 78 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 GG DP A+ ++A A GYD +NLNVGCPS RVQ G FGACLM LVA+ V AM + Sbjct: 79 GGDDPHAMHAAGRMARAYGYDGLNLNVGCPSPRVQKGSFGACLMTTPDLVAELVAAMGE- 137 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 +PV+VK R+G+D ++ Y L F+ TV+ G C FI+HAR AWL GLSP ENR++PP Sbjct: 138 SGLPVSVKHRLGLDREEDYAALRAFVETVATAG-CRHFIVHARNAWLKGLSPAENRDVPP 196 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREI 250 L + V+QLKRD PHLT+ INGG L A +DGVM+GR AY +P +LA ++R + Sbjct: 197 LRWDWVHQLKRDLPHLTIEINGGFNDLAAVTAQFSAVDGVMLGRAAYHHPLLLAEIERAL 256 Query: 251 FGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSEN 308 G +T +P ++ + Y ER + ++RH+ GL G GA WRR+L Sbjct: 257 -GRRETLPEPEVILSGLIAYAERW-GEWLPAPRLSRHLHGLRFGQRGAGAWRRFLGTA 312 >UniRef50_B9JF02 tRNA-dihydrouridine synthase protein n=12 Tax=Alphaproteobacteria RepID=B9JF02_AGRRK Length = 342 Score = 267 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 65/290 (22%), Positives = 111/290 (38%), Gaps = 20/290 (6%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE--H 64 V R +APM TD R L+ TEMV + ++ + A + Sbjct: 23 VPIRNRVILAPMSGVTDLPFRQLALRYGA-GLVVTEMVASRELVQDTAESWARLKSAGLK 81 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P +QL G + +A+ AK+A G D I++N+GCP+ +V G G+ LM + + Sbjct: 82 PHMVQLAGREAYWMAEAAKIAADNGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLI 141 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +A V +PVT+K R+G D+ I + + ++ IH R Sbjct: 142 EATVKAVDVPVTLKMRLGWDENSINA---PHIARRAEEAGIQLVTIHGRTRM-------- 190 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGI 242 D+ + + RD + + NG + + E+A L+ D VMVGR P Sbjct: 191 QFYEGRADWDAIRAV-RDVISIPLVANGDVDTPEDASEILRRSGADAVMVGRGCQGRPWH 249 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 + + + Y + + + H +H+ Sbjct: 250 AGVLAGHR---EPDRGEIADIALEHYRMMLDFYGEAVGIRHARKHLGWYL 296 >UniRef50_Q6AJZ5 tRNA-dihydrouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJZ5_DESPS Length = 328 Score = 267 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 75/308 (24%), Positives = 124/308 (40%), Gaps = 23/308 (7%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 64 +S F +AP+ +TD R + +EM++ + + + LA EE Sbjct: 8 QFSSPFVLAPLAGYTDLSFRLLCHQFGADY-TVSEMISCHGLFYNQQRTLEMLASLPEER 66 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 PV+ QL G++P +A+ + D I++N+GCP +V GA LM +L D + Sbjct: 67 PVSFQLFGAEPDIMAKATLILNDFQPDMIDINMGCPVRKVTKKGAGAALMSTPELAYDVI 126 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +++ D IPVTVK R G+ S E ++ + +H R + Sbjct: 127 RSVVDNTDIPVTVKFRAGV---SSTELNGVEFGLMTERAGAAAVAVHGRT--------RA 175 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGI 242 D + ++K + + NG I S ++ + DGVMVGR A NP + Sbjct: 176 QAFSGVADRGIIKEVKEALS-IPVIGNGDILSYQDGLDMMAETGCDGVMVGRGALGNPWV 234 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 + G A +ER LG I HM F+ +PG+ + R Sbjct: 235 F-----QASGKPANIHGLAAGALQHLLLMERFNPVERVLGLIKNHMSKYFKDMPGSSRLR 289 Query: 303 RYLSENAH 310 + + Sbjct: 290 TAIFTASS 297 >UniRef50_O53835 Probable tRNA-dihydrouridine synthase n=107 Tax=Actinobacteria (class) RepID=DUS_MYCTU Length = 389 Score = 266 bits (680), Expect = 8e-70, Method: Composition-based stats. Identities = 80/335 (23%), Positives = 127/335 (37%), Gaps = 32/335 (9%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLL------SRNTLLYTEMVTTGAIIHGKGDYL--- 57 + + +APM T+ R R L + + L EMVT A+I + Sbjct: 18 IELASPVVLAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMT 77 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGN 116 +S +E P +LQL DP A++ G D I++N GCP +V GA L Sbjct: 78 TFSADESPRSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFK 137 Query: 117 AQLVADCVKAMRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR 173 +L V A IPVTVK RIGIDD ++ +HAR Sbjct: 138 RRLFGQIVAAAVRATEGTDIPVTVKFRIGIDD---AHHTHLDAGRIAEAEGAAAVALHAR 194 Query: 174 KAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVM 231 A R D+ ++ +LK+ + + NG I +A A + DGV+ Sbjct: 195 TA--------AQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDALAMMSTTGCDGVV 246 Query: 232 VGREAYQNPGILAAVDREIFGSSDTDADPV----AVVRAMYPYIERELSQGTYLGHITRH 287 +GR P + A + GS + ++R + + + I +H Sbjct: 247 IGRGCLGRPWLFAELSAAFTGSPAPTPPTLGEVADIIRRHGTLLAAHFGEDKGMRDIRKH 306 Query: 288 MLGLFQGIPGARQWRRYLS--ENAHKAGADINVLE 320 + G P RR L+ + + ++ L+ Sbjct: 307 IAWYLHGFPAGSALRRALAMVKTFDELDCLLDRLD 341 >UniRef50_B9L781 tRNA-dihydrouridine synthase B n=1 Tax=Nautilia profundicola AmH RepID=B9L781_NAUPA Length = 313 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 62/324 (19%), Positives = 122/324 (37%), Gaps = 28/324 (8%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEEHPV 66 S F +AP+ +TD R ++ + + ++EM AI + + S E+P Sbjct: 10 SPYFFLAPLAGYTDLPFRSVVKKFGCD-MTFSEMTNVNAIAYQNEKTQKMMEKSPLENPY 68 Query: 67 ALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGN--AQLVADC 123 +Q+ ++ + ++ D I++N+GCP ++ + FG L+ + + + Sbjct: 69 FVQIAANNVENAVKAVEIINELNWIDGIDINLGCPVNKARRSGFGGVLLKDENRDFLKEV 128 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 V + PV+ K RIG D + + + IH R Sbjct: 129 VGTIVKTSKKPVSAKMRIGFDKS-----VVEDRAKLLEDLGIVFLTIHGRTV-------- 175 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPG 241 + DY + + + + NG I E+AK L+ GV +GR A P Sbjct: 176 KQMYKGEADYDEIKKGVNAV-KIPVIANGDITDYEKAKYVLEYTGASGVSIGRGAVGKPW 234 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 I + ++ + T V+ + + + + +H +GIP A ++ Sbjct: 235 IFLEMKQQ---GNITSEQKKEVILEHFNQMVYWYGE-YGVILFRKHAHAYSKGIPKASEF 290 Query: 302 RRYLSENAHKAGADINVLEHALKL 325 R ++E A ++E + Sbjct: 291 RSKMNEVKDPEVAR-KLIEEYFNV 313 >UniRef50_B5X496 tRNA-dihydrouridine synthase 3-like n=3 Tax=Eukaryota RepID=B5X496_SALSA Length = 654 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 112/296 (37%), Gaps = 19/296 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAY 59 EK V + + +AP+ + R + + + EM ++ G+ L Sbjct: 301 EKKQVDFKDKLYLAPLTTCGNLPFRRICKRFGAD-ITCGEMAMCTNLLQGQSSEWALLKR 359 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E E +Q+ G P + +CA+L + D +++N GCP D V G LM Sbjct: 360 HESEDLFGVQVEGCFPDTMTRCAELLNNKIDVDFVDINSGCPIDLVYKKGGGCGLMTRTN 419 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 ++ M V+ +P+TVK R G+ Q+ I + G M +H R Sbjct: 420 KFEQIIRGMNSVLDVPLTVKIRTGV--QEKANIAHKLIPEMKKWG-VSMITLHGR----- 471 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-MDGVMVGREAY 237 +E R D+ + + + + NG I S +A + + G+M+ R A Sbjct: 472 ---SREQRYTKSADWDYINTCSQLASPIPLFGNGDILSYYDAMKARETDVSGIMLARGAL 528 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P + + E + ++ + V+R Y +E S L +L Sbjct: 529 IKPWVFTEIK-ERRDWDISSSERLDVLRDFTHYGLEHWGSDTQGLEKTRNFLLEWL 583 >UniRef50_D0NNQ3 tRNA-dihydrouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NNQ3_PHYIN Length = 377 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 74/328 (22%), Positives = 139/328 (42%), Gaps = 26/328 (7%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEE 62 S + VAPM+D ++ R R L + YT M+ + + + + Sbjct: 19 RAIGSPKRIVAPMVDQSELAFRMLCRKLGADC-CYTPMLHSRLFAESAEYREKMFEHHIQ 77 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 + P+ +Q G+DP + AK+ E D ++LN+GCP + G +G+ LM + + V Sbjct: 78 DRPLVVQFCGNDPKTVLAAAKMVEGH-CDAVDLNLGCPQGIARKGHYGSFLMHDKETVKA 136 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 VK + ++IPVTVK R+ DD ++ EF + + C++ +H R ++ + Sbjct: 137 TVKTLSAGLNIPVTVKIRVFPDDNETLEFA-----DMLQEAGCDLLTVHGRTKEMNKTAV 191 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNP 240 +E +++ + ++K + + NGGI++ E+ L+ DGVM +NP Sbjct: 192 RE------VNWDIIRRIKERLT-IPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENP 244 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLG-LFQGIPGAR 299 + A + + D + + R + + H+ LFQ + Sbjct: 245 ALFADTNN----TPGEDTSFLELARQYLECATLYPPASDKI--VRAHLFKILFQDLRVHS 298 Query: 300 QWRRYLSENAHKAGADINVLEHALKLVA 327 R L+ + V E A++L Sbjct: 299 DLRDALAAAKSQQEMVEIVDELAVRLKE 326 >UniRef50_D2RA64 TIM-barrel protein, nifR3 family n=5 Tax=Actinobacteridae RepID=D2RA64_GARVA Length = 384 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 120/328 (36%), Gaps = 27/328 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEE 62 VH + ++PM T+ R R + L EM+T A++ L ++ Sbjct: 12 KVHIATPVVLSPMAGITNWPFRVICREFGPDGLYVAEMITARALVARNPKALRLCRFAPS 71 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E +LQL G +P+ + Q ++ D ++LN GCP +V G+ L L+ Sbjct: 72 EKVRSLQLYGVNPSIVEQATRIVVDENMADHVDLNFGCPVPKVTRRGGGSALPWKTDLLQ 131 Query: 122 DCVKAMRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + + + V IPVT K R+GID+ ++ + C +HAR Sbjct: 132 EILHRVVSVCEPAGIPVTAKFRVGIDENHETFI---QAGHIAQEEGCAAVTLHART---- 184 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREA 236 D+ R+ +L + + NG I E+A A GV +GR Sbjct: 185 ----TAEYYGGHSDWQRIGELVETL-DIPVFGNGDIWGAEDALAMFKETGCAGVAIGRGC 239 Query: 237 YQNPGILAAVDREIFGSSDTDADPVA----VVRAMYPYIEREL--SQGTYLGHITRHMLG 290 P + A + GS + +A V+ + + + + +H+ Sbjct: 240 QGRPWLFADIRNACEGSDNRVNPTLAEVGSVILRHLNLLVEFYDGDERMAVHDLRKHIAW 299 Query: 291 LFQGIPGARQWRRYLSENAHKAGADINV 318 +G P R+ E N+ Sbjct: 300 YLKGFPVGGGTRKAFMECESIEDVQRNL 327 >UniRef50_A6DCX2 tRNA-dihydrouridine synthase B n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCX2_9PROT Length = 311 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 55/331 (16%), Positives = 130/331 (39%), Gaps = 28/331 (8%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYL 57 M + + F +AP+ +TD R ++ + + ++EM+ AI + Sbjct: 1 MTNISILKSKPLFFLAPLAGYTDLPFRSVVKEFGCD-MTFSEMINANAIAFNNEKTKKMM 59 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGN 116 S +E P +Q+ ++ + ++ D I++N+GCP ++ + +G L+ + Sbjct: 60 QKSSKETPYFIQIAANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLKD 119 Query: 117 --AQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK 174 + + + V A+ V+ K R+G ++ + + + + +H R Sbjct: 120 ENKEKLKEIVSAIIKTSKKIVSAKMRLGYNEVVAVDRA-----KMLEDLGIKFLTVHGRT 174 Query: 175 AWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMV 232 + +Y + ++ ++ ++ + NG I ++AK L+ +GV + Sbjct: 175 V--------KQMYKGNANYKEIKKVVKEV-NIPVIANGDITDYKKAKEVLEYTEANGVAI 225 Query: 233 GREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 GR P I + ++ T V+ + + + +H+ Sbjct: 226 GRGVIGKPWIFLEMKQQ---GEITPYQKKEVILTHFKAMIEWYGD-YGVILFRKHLHQYS 281 Query: 293 QGIPGARQWRRYLSENAHKAGADINVLEHAL 323 +GI A ++R ++ +K IN++E Sbjct: 282 KGIKNASEFRSKINSTENK-DEVINLIEEYF 311 >UniRef50_Q5CSA9 Dus1p, tRNA dihydrouridine synthase (Fragment) n=3 Tax=Cryptosporidium RepID=Q5CSA9_CRYPV Length = 409 Score = 264 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 68/334 (20%), Positives = 128/334 (38%), Gaps = 27/334 (8%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTT---GAIIHGKGDYLAYS 60 +V S + +APM+D ++ R + + L Y+ M + + + Sbjct: 12 WKNVLKSPKTVLAPMVDGSELAFRLICKKYGCD-LGYSPMYHSGLFSKLQGYRETNFQTC 70 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 EE+ P+ +Q G+DP L + +K + + I++N GCP + + G +GA L+ N L+ Sbjct: 71 EEDDPMIVQFCGNDPETLVKASKFIDDK-VKGIDINFGCPQNIAKRGNYGAFLLSNPDLM 129 Query: 121 ADCVKAMRDV-VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 + + + + PV+ K RI D + + I + G C M +H R G Sbjct: 130 ERIISTLSESDLKCPVSCKIRIL--DHHDLQPTINLIKRLESAGAC-MIAVHGRTMTSRG 186 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAY 237 + P ++ + LK + NGGI + E+ + L D VM Sbjct: 187 VL------TGPANWEALKILKSRCS-IPFIANGGISNYEDIQKCLNYTGADAVMSAEGIL 239 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ---G 294 +NP + ++ + Y + I H+ +F Sbjct: 240 ENPWLFQGFKTPEAINNK--PSQFQIALEYLDYCILYPPPNVGI--IRTHLYRIFHTIFS 295 Query: 295 IPGARQWRRYLSEN--AHKAGADINVLEHALKLV 326 +PGA +R ++ + H+ + LE+ Sbjct: 296 LPGAHIFRDEINNSHQVHEFQLFVQNLENFYNTK 329 >UniRef50_C3MBL4 tRNA-dihydrouridine synthase n=1 Tax=Rhizobium sp. NGR234 RepID=C3MBL4_RHISN Length = 342 Score = 264 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 116/294 (39%), Gaps = 19/294 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY--SEEE 63 +V R ++APM TD R + TEMV + ++ + A + Sbjct: 21 NVEIRNRVALAPMSGVTDLPFRMLAWRFGA-GFVVTEMVASRELVGNAAESWARLKNSGI 79 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P +QL G + +A+ AK+ EA G D +++N+GCP+ +V G G+ LM + Sbjct: 80 DPHIVQLAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTGGYSGSALMRDPDHALSL 139 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 ++A V +PVT+K R+G D+ I + + + IH R Sbjct: 140 IEATVKAVRVPVTLKMRLGWDENSINA---PLIARRAEEAGVQAITIHGRTRM------- 189 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPG 241 D+ + + RD + + NG + ++ +A L+ D VM+GR P Sbjct: 190 -QFYNGNADWDAIRAV-RDVISIPLIANGDVDTIADAMEILRRSGADAVMLGRSCQGRPW 247 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 A+ + T+ A+ Y + L H +H+ + Sbjct: 248 HAGALAGAADEPAATEI--AAIFVEHYAMMLDFYGPEIGLRHARKHVGWYLERF 299 >UniRef50_D0U4P6 tRNA-dihydrouridine synthase n=2 Tax=uncultured SUP05 cluster bacterium RepID=D0U4P6_9GAMM Length = 324 Score = 264 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 77/330 (23%), Positives = 135/330 (40%), Gaps = 25/330 (7%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEH 64 + +APM +D+ R R L +EMV + G L +S E Sbjct: 9 QLKSQVFLAPMAGTSDKPFRAICRAQGA-ALTTSEMVVIQKHLLGTNKSKHRLDFSGEPA 67 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+++Q+ GS LA A+ A G D I++N+GCP+ +V N G+ LM + LV + Sbjct: 68 PISIQIAGSQADELAYSAQQALKFGADIIDINMGCPAKKVCNKAAGSALMQDEALVKSIL 127 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 A+ V IPVT+K R G + + I ++ + +M +H R +E Sbjct: 128 NAVVSAVDIPVTLKMRTGWNVSNKNAPT---IAKIAEEAGIQMLSVHGRT--------RE 176 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGI 242 ++ +Y + +K + + NG I S ++A++ L DGVMVGR NP I Sbjct: 177 DKYTGMAEYDTIKAVKSQV-GIPVIANGDITSAKKAQSVLQYTGADGVMVGRATQGNPWI 235 Query: 243 LAAVDREIFGSSDTDADPVAVVRA----MYPYIERELSQGTYLGHITRHMLGLFQGI--P 296 + +D + P+ V + I + +H+ + Sbjct: 236 IHEIDHYLKTGQKATDIPLNVKKQTILDHIKQIHAFYGEKLGTQLSRKHIFWYATHLDEK 295 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLV 326 A+ + +++ +LE+ L + Sbjct: 296 NAQTFWEKVNKITDH-KLQYQLLENYLHQL 324 >UniRef50_Q2RTR9 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RTR9_RHORT Length = 362 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 123/306 (40%), Gaps = 27/306 (8%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA-------YSEE 62 +APM TD R L +TEMV + ++ + + + Sbjct: 11 DPLIMLAPMAGVTDSPFRRLAHDYGCP-LSWTEMVASRELLRERARGVDPRLGGGAEAGR 69 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 P A+QL G DP +A+ A+ E G + I++N+GCP +V G+ G+ LM + L A Sbjct: 70 AGPFAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALMRDLPLAAR 129 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 ++A+ V++PV++K R+G DD ++ +H R Sbjct: 130 ILEAVVGAVTLPVSLKMRLGWDDASRNAVEL---ARLAESAGISRLTVHGRT-------- 178 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNP 240 + D+P + +KR L + NG + +L EA+ L DGVM+GR A P Sbjct: 179 RAQMYDGRADWPAIGLVKRAVS-LPVIANGDVTNLSEAREILAVTGADGVMIGRAALGAP 237 Query: 241 GILAAVDRE-----IFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 + A+ R A+ AV+ A + L +HM + + Sbjct: 238 WLPGAIARAIAAGTRETPPPALAERAAVMAAHLEGLLACHGLERGLKTSRKHMGWYARTM 297 Query: 296 PGARQW 301 P + Sbjct: 298 PQGADF 303 >UniRef50_Q8I2W5 Dihydrouridine synthase, putative n=8 Tax=Plasmodium RepID=Q8I2W5_PLAF7 Length = 577 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 125/355 (35%), Positives = 194/355 (54%), Gaps = 38/355 (10%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG---DYLAYSEEEHPVA 67 VAPM++ T+RH R +R++++ L+TEM+ +++ ++L + EHP+ Sbjct: 198 PFIQVAPMINVTNRHFRAMVRIITKRAQLWTEMIVDNTLLYNLNNLEEHLGFDNNEHPIV 257 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQLVADCVKA 126 QLGG D ++++ A L E GYDEIN+NVGCPS +V N FGA LM N + V + V Sbjct: 258 CQLGGCDMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASLMKNPEQVRNIVYE 317 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 ++ V IPVTVK R G+D+ DS++FL FI TVS G C FI+HARKAWL GL PK+NR Sbjct: 318 IKKKVQIPVTVKIRTGVDNYDSFDFLKTFIETVSSVG-CNHFIVHARKAWLKGLDPKQNR 376 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH-------------------- 226 +IPPL+Y +VY L + +PHL ++NGGI++++EA A L Sbjct: 377 KIPPLEYYKVYDLCKLYPHLKFTLNGGIQTIQEAIALLNGYMPENYNNNNNNNNDTSNFI 436 Query: 227 ---------MDGVMVGREAYQNPGILAAVDREIFGS--SDTDADPVAVVRAMYPYIERE- 274 ++G+M+GR +N +L+ D+ ++ T ++ A Y+E+ Sbjct: 437 QIDNYNINPLNGIMIGRACMENITVLSQTDKLVYNQDIPSTAYSRRTILEAYKKYLEKNS 496 Query: 275 -LSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLVAD 328 + + + +LG+ +G+PG R +R L + + E K +AD Sbjct: 497 LFYNLSSSFELLKPVLGILKGMPGHRIFRNKLDTYIRNYTSTLPCSEILEKAIAD 551 >UniRef50_Q256J2 Dehydrogenases n=13 Tax=Chlamydiaceae RepID=Q256J2_CHLFF Length = 339 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 76/338 (22%), Positives = 127/338 (37%), Gaps = 22/338 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---Y 59 ++ AP+ ++D R L L++ EMV + + L Y Sbjct: 6 HIGNILLKSPIVYAPLAGFSDYPYRRMSSLYGLPALMFCEMVKIEGLHYSPSRTLKLLEY 65 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 SE P+ QL GS P + AK+ E G+D I+LN GCP+DR+ G+ L+ +L Sbjct: 66 SESMRPIGGQLCGSKPEMAGEAAKVLEGLGFDLIDLNCGCPTDRITKDGSGSGLLKTPEL 125 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 + ++ + VSIPVTVK R G D + + + + +H R Sbjct: 126 IGKVLEKIIGSVSIPVTVKIRSGWDGNNIN---VEETVRIIKEAGASAVFVHGRT----- 177 Query: 180 LSPKENREIPPLDYPRVYQLKRDF-PHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREA 236 + + P + + + K + NG + S E AK L DGV+V R Sbjct: 178 ---RAQGYVGPSNLEYIARAKAAAGKDFPVFGNGDVFSPEAAKLMLDSTGCDGVLVARGT 234 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYI----ERELSQGTYLGHITRHMLGLF 292 P I ++ + + +A ++ E S+ +L + Sbjct: 235 MGAPWIARQIEDYLTTGTYQKMPFSTRKQAFLQHLHWVEEYYQSEAKFLCETRKLCGHYL 294 Query: 293 QGIPGARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 R R LS+ A A ++E + + R Sbjct: 295 ISAAKVRFLRSALSK-ATSVQAVYQLIEAYEESDDEPR 331 >UniRef50_Q6SFW7 NifR3/Smm1 family protein n=1 Tax=uncultured marine bacterium 578 RepID=Q6SFW7_9BACT Length = 322 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 133/321 (41%), Gaps = 24/321 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAII---HGKGDYLAYSEEEHP 65 S + +APM +D+ R R L +EMV + + L + E+ P Sbjct: 8 LSSKVLLAPMAGTSDKPFRMICREQGA-ALTTSEMVVMQKHLLNTNKSKHRLDFRSEQSP 66 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +++Q+ GS+ LA+ AK A G D I++N+GCP+ +V N G+ LM N +LV D +K Sbjct: 67 ISIQIAGSESQELAESAKQALEFGADIIDINMGCPAKKVCNKAAGSALMKNEKLVEDIIK 126 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+ + V+IPVT+K R G ++++ I ++ +M IH R + Sbjct: 127 AVVNAVNIPVTLKMRTGWNEENKNAPT---IAKIAEDNGIKMLAIHGRT--------RAQ 175 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGIL 243 + +Y V ++K + + NG I S ++AK L D VM+GR NP ++ Sbjct: 176 KYNGDAEYDTVKKIKG-IVSIPVVANGDITSAQKAKKVLDYTGADAVMLGRATQGNPWLV 234 Query: 244 AAVDREIFGSSDTDADPVA----VVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG-- 297 ++ + A + ++ I +H+ + Sbjct: 235 GQINNYLKTGKSPKAPLLDKKISLILRHILQIHDFYGHKMGTQLSRKHIFWYSMHLDQEK 294 Query: 298 ARQWRRYLSENAHKAGADINV 318 + ++ + + Sbjct: 295 GSAFWPNINRVTDHSEQYLKF 315 >UniRef50_Q88DK5 tRNA-dihydrouridine synthase B n=460 Tax=Proteobacteria RepID=DUSB_PSEPK Length = 337 Score = 263 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 67/332 (20%), Positives = 136/332 (40%), Gaps = 26/332 (7%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTG-AIIHGKGDYLAYSEEE--H 64 +APM TD+ R + L ++ +EMV++ ++ + + L E Sbjct: 10 TLRNNLILAPMAGVTDQPFRTLCQRLGA-GMVVSEMVSSDMSLWNSRKSSLRRIHEGDPE 68 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P ++Q+ G D +A AK G I++N+GCP+ +V N G+ L+ + LV++ + Sbjct: 69 PRSVQIAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGSALLRDEALVSEIL 128 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 A+ V +PVT+K R G D + + ++ + + +H R + Sbjct: 129 HAVVSAVDVPVTLKIRTGWDRANKNGLN---VAKIAEQAGIQALAVHGRT--------RA 177 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGI 242 + +Y + +K+ + + NG I S E+A+A L+ +DG+++GR A P I Sbjct: 178 DLYTGEAEYDTIGAIKQAVS-IPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRPWI 236 Query: 243 LAAVDREIFGSSDTDADPVA----VVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 ++ + A + ++ + + +H+ PG Sbjct: 237 FREIEHYLRTGEHLPAPQLDEVERILLEHLAALHAFYGDVMGVRIARKHVGWYLATRPGG 296 Query: 299 RQWRRYLSENAHKAGADINVLEHALKLVADKR 330 +++R + NV +++R Sbjct: 297 KEFRARFNALEDTQAQCANV----RAFFSERR 324 >UniRef50_Q3AZ67 Dihydrouridine synthase TIM-barrel protein nifR3 n=24 Tax=Cyanobacteria RepID=Q3AZ67_SYNS9 Length = 356 Score = 263 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 87/326 (26%), Positives = 142/326 (43%), Gaps = 20/326 (6%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAII--HGKGDYLAYSEEEHP 65 R +P+ TD+ R +R SR++LL+TEMV ++ HG G EE P Sbjct: 34 QLHSRVLQSPLAGVTDKIFRGLVRRWSRDSLLFTEMVNATSLELGHGYGKMDDLKAEEGP 93 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +A+QL P A+A A+ AE G I++N+GCP ++ G+ L+ + L ++ Sbjct: 94 IAVQLFDHRPHAMAHAARRAEQAGAFLIDINMGCPVRKIAKKGGGSGLIRDPNLATQILE 153 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A+ D VSIPVTVKTR+G S + + G +M +H R +E Sbjct: 154 AVVDAVSIPVTVKTRLGWCGSSSDPIT--WCRQLQNAG-AQMLTLHGRT--------REQ 202 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL 243 ++ + ++K+ + + NG I S +A L+ DGVMVGR +P ++ Sbjct: 203 GFKGQANWNAIAEVKQALT-IPVIANGDINSPTDALRCLEITGADGVMVGRGTMGSPWLV 261 Query: 244 AAVDREIFGSSDTD-ADPVAVVRAMYPYIERELSQG--TYLGHITRHMLGLFQGIPGARQ 300 ++ D A + + +S L +HM G PGA Q Sbjct: 262 GQIEAAFMNRPIPATPDSGARLHLAKEQLHDLVSSRGSHGLLIARKHMSWTCTGFPGAPQ 321 Query: 301 WRRYLSENAHKAGADINVLEHALKLV 326 R L A ++++A+ + Sbjct: 322 LRHSLMR-ATTPDDAYQLIDNAINSL 346 >UniRef50_B1XUD8 Dihydrouridine synthase DuS n=2 Tax=Polynucleobacter necessarius RepID=B1XUD8_POLNS Length = 362 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 144/321 (44%), Positives = 199/321 (61%), Gaps = 24/321 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHPVAL 68 R +VAPM++WTDRHCR F R L++ +LYTEMVTTGA++HG +L YS+++HPV L Sbjct: 8 KKRLAVAPMMEWTDRHCRSFHRALTKKAVLYTEMVTTGALMHGDVPRHLDYSQDQHPVIL 67 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 QLGGS+P LA+ A+LA+ GYDEI+LN GCPS+R+Q G FGACLM LVA+CVK+M+ Sbjct: 68 QLGGSEPNDLAKSAELAQQWGYDEIDLNCGCPSERMQRGAFGACLMAEPNLVAECVKSMK 127 Query: 129 DVVSIPVTVKTRIGIDDQDS------YEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 V +P++VK R+G+D D+ Y+F +FI V+ G IHAR A L GLSP Sbjct: 128 SAVDVPISVKHRLGLDSMDAAHSEADYQFALNFILAVADAG-ASQVTIHARNAVLKGLSP 186 Query: 183 KENREIPPLDYPRVYQLKRD----FPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQ 238 KENR PPL Y +L+ D FP L + +NGG+++ E+ H DG MVGR AY Sbjct: 187 KENRSRPPLRYEVAAKLRLDAQIHFPKLKVLLNGGLETNEQIAGHWNGFDGFMVGRAAYH 246 Query: 239 NPGILAAVDR----------EIFGSSDTDADPVAVVRAMYPYIERE--LSQGTYLGHITR 286 P +L D +F S+ +A+V+ ++ + + + Y+G TR Sbjct: 247 FPALLLGWDDMITTDGDAAGYLFSESEWHRIQIALVKQVHAWFDECQSKGKPFYIGVFTR 306 Query: 287 HMLGLFQGIPGARQWRRYLSE 307 H+LGL G G+R WR+ LS+ Sbjct: 307 HILGLAHGRAGSRYWRQRLSD 327 >UniRef50_D1NSS9 Putative tRNA-dihydrouridine synthase n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NSS9_9BIFI Length = 422 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 71/323 (21%), Positives = 118/323 (36%), Gaps = 27/323 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEE 62 +VH ++PM T+ R + L EM+T A++ L ++ Sbjct: 50 NVHVGTPVILSPMAGVTNWPFRVLCEQYGPDGLYVAEMITARALVARNPKALRLCRFAPS 109 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E +LQL G +P+ + Q AK+ D ++LN GCP +V G+ L L Sbjct: 110 ERIRSLQLYGVNPSIMEQAAKIVVDEQMADHVDLNFGCPVPKVTRRGGGSALPWKTDLFT 169 Query: 122 DCVKAMRDVVS---IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 D V + V IPVT K R+GID + ++ + C+ +HAR Sbjct: 170 DVVSRVVRVCDAAGIPVTAKIRVGIDHEHE---TFHEAGHIAQEEGCKAVTLHART---- 222 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREA 236 D+ R+ +L + + NG I +A A ++ GV +GR Sbjct: 223 ----TAEYYGGHSDWSRIGELVEQL-DVPVFGNGDIWGAADALAMVEQTGCAGVAIGRGC 277 Query: 237 YQNPGILAAVDREIFGSSDTDADPV----AVVRAMYPYIEREL--SQGTYLGHITRHMLG 290 P + A + GS + + V+ Y+ + + +H+ Sbjct: 278 QGRPWLFADIKHAFAGSDERTDPTLGQVCQVIMRHATYLTEFYDGDERMAAHDMRKHVAW 337 Query: 291 LFQGIPGARQWRRYLSENAHKAG 313 +G P RR A Sbjct: 338 YLKGFPVGGGVRRAFMACESLAD 360 >UniRef50_D0NZC8 tRNA-dihydrouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NZC8_PHYIN Length = 379 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 129/351 (36%), Positives = 190/351 (54%), Gaps = 34/351 (9%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVAL 68 R SVAPM+DWTDRH R+ +R++++ TLL+TEMV +++ + + +L + E P+AL Sbjct: 9 RLSVAPMMDWTDRHYRFMMRMITKKTLLFTEMVVDQTLLYQRKNLDYFLGHDPAEAPLAL 68 Query: 69 QLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 QLGG+ L A L+++ G + EINLN GCPS V + FGA LM + V D +M Sbjct: 69 QLGGNSVEDLGAAAHLSQSYGGFCEINLNTGCPSALVSSRCFGARLMLEPERVRDICDSM 128 Query: 128 RDVV--------SIP---VTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 R V P VTVK RIG+DD DSY+ L ++ V+ G I+HARK Sbjct: 129 RHSVALASEGNPDHPTAEVTVKCRIGVDDCDSYDELHHYVAAVASAG-VRHIIVHARKCL 187 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGR 234 L GLS K+NR IPPL Y VY+LK+DFP L+ ++NGG+KS++ A+ L ++DG+M+GR Sbjct: 188 LKGLSTKDNRTIPPLRYEVVYRLKQDFPELSFTLNGGVKSIQHARELLNTTNVDGIMIGR 247 Query: 235 EAYQNPGILAAVDREIFG-SSDTDADPVAVVRAMYPYIERE---LSQGTYLGH------- 283 AY P DR IF + + ++ Y E L Sbjct: 248 AAYNTPWNFRDADRLIFNAERNPNLSRREIIERYLEYAEDLQAKWGSTEPLSDSPYTMAT 307 Query: 284 --ITRHMLGLFQGIPGARQWRRYLSENAHKAGADINV---LEHALKLVADK 329 + + +L LF G G + ++R +S K G + +E A+K++ + Sbjct: 308 SALMKPLLSLFNGEFGGKAFKREISAQWSKKGPRPELREMIESAMKVLPSE 358 >UniRef50_Q9RDC6 Putative uncharacterized protein SCO2497 n=4 Tax=Bacteria RepID=Q9RDC6_STRCO Length = 406 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 71/347 (20%), Positives = 120/347 (34%), Gaps = 44/347 (12%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLL-SRNTLLYTEMVTTGAIIHGKGDYLA---YSEEE 63 + +APM T+ R R L +EM+TT A++ + + E Sbjct: 22 TVAPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALVERNEKTMQLIHFDATE 81 Query: 64 HPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 P ++QL G DP + + ++ G D I+LN GCP +V G+ L L+ Sbjct: 82 TPRSIQLYGVDPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLRA 141 Query: 123 CVK-AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 V+ A+ +PVT+K R G+DD ++ + +H R Sbjct: 142 IVREAVTGAGDLPVTMKMRKGLDDDHLTYLD---AGRIAVEEGVTAIALHGRT------- 191 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQN 239 D+ + +LK P + + NG I S E+A + DGV+VGR Sbjct: 192 -TAQHYGGTADWDAIARLKEHVPEIPVLGNGDIWSAEDALRMVRETGCDGVVVGRGCLGR 250 Query: 240 PGILAAVDREIFGS-----SDTDADPVAVVRAMYPYIERELSQGTYLGH----------- 283 P + A + G T + V+ + + G Sbjct: 251 PWLFADLVAAFEGRTDSFVRPTLREVADVMVRHATLLGEWIENGGTARRATVEGGGGRRE 310 Query: 284 --------ITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHA 322 +H+ +G + R+ L+ A L+ Sbjct: 311 GEARGVIDFRKHVAWYLKGFAVGSEMRKRLA-VTSSLEALRAGLDEL 356 >UniRef50_Q14SX5 Putative dihydrouridine synthase n=6 Tax=Clostridiales RepID=Q14SX5_RUMFL Length = 332 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 73/332 (21%), Positives = 117/332 (35%), Gaps = 27/332 (8%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAY 59 + +V ++APM DR R + + +EMV+ I + Sbjct: 6 KIGNVTIPRTAALAPMAGVADRAYRLMCKRYGA-AYVVSEMVSAKGICYSDRKTAELCTV 64 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA-Q 118 +EEE P+A+QL GS+P +A+ K+ D I++N+GCP +V G+ LM + Sbjct: 65 TEEERPMAVQLFGSEPDFMAEAVKIVLDYRPDIIDINMGCPVPKVVGTGAGSALMKDPAL 124 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 A A++ PVTVK R G + +H R + Sbjct: 125 AAAITEAAVKAAGDTPVTVKIRSGWSSDSINA---PEMARALEASGTAAIAVHGRTRDM- 180 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREA 236 D + +K + + NG I E D VM+GR + Sbjct: 181 -------FYSGQSDMNVIKAVKEAVS-VPVIGNGDITDAESCAEMYGRTGCDLVMIGRGS 232 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIER-----ELSQGTYLGHITRHMLGL 291 Y NP I + + GS +R M +I E + + +H Sbjct: 233 YGNPFIFREIAARMEGSEYQPPSLEEKMRVMLEHIRLIAGLSEKCEELAMHEARKHAAWY 292 Query: 292 FQGIPGARQWRRY---LSENAHKAGADINVLE 320 G G+ ++R LS A +E Sbjct: 293 MNGYYGSAKFRGRCYQLSSYAEAEALAEEFIE 324 >UniRef50_B9JW92 Nitrogen regulation protein n=4 Tax=Rhizobiales RepID=B9JW92_AGRVS Length = 332 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 68/291 (23%), Positives = 117/291 (40%), Gaps = 20/291 (6%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH-- 64 V R +APM TD R L+ TEMV + ++ + + + Sbjct: 15 VAIRNRVVLAPMSGVTDLPFRQLAFRHGA-GLVVTEMVASRELVFNAAESWSRLKGAGLT 73 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P +QL G DP +A+ AK+AEA G D I++N+GCP+ +V G G+ LM ++ + Sbjct: 74 PHMVQLAGRDPHWMAEAAKIAEANGADIIDINMGCPAKKVIGGYAGSALMREPEIALAMI 133 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +A VSIPVTVK R+G D + + + +H R Sbjct: 134 EATVKAVSIPVTVKMRLGWDSDSINAPDL---SRRAQDAGVQAITVHGRTRM-------- 182 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGI 242 D+ + ++ ++ + NG I +L +A+ L+ D +M+GR P Sbjct: 183 QFYEGRADWDAIAAVRDAI-YIPLIANGDIDTLGDAQEILRRSGADAIMLGRACQGRPWH 241 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 + + + A+ A Y + + H +H+ + Sbjct: 242 AGVLAGHA---PPSAEEIPAIAVAHYRAMLDHYGAHVGVRHARKHVGWYLE 289 >UniRef50_A0LJ96 Putative TIM-barrel protein, nifR3 family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJ96_SYNFM Length = 352 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 74/300 (24%), Positives = 130/300 (43%), Gaps = 22/300 (7%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVAL----QLG 71 APM TD R + ++ TEMV+ ++ + L ++HPV + Q+ Sbjct: 27 APMAGVTDSAYRALMADFGA-AMVTTEMVSIQGLVRNQRATLDLCRQQHPVGVPLAVQVF 85 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G DPA +A+ A+L E G I++N GCP +V GA L+ + +A V+A++ V Sbjct: 86 GRDPAVMAEAARLVEQGGAALIDINAGCPVRKVVRQGAGAILLKDPDRLAAMVEAVKRAV 145 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 S+PVTVK R+G D+ + + +H R A Sbjct: 146 SVPVTVKIRVGWDN---AANGVAGLARQLVSAGVDAITVHGRTA--------AQMYSGRA 194 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAVDRE 249 D+ R+ ++K + + NG + S E A+ + DGVM+GR + NP + A + R Sbjct: 195 DWSRIAEVKAAVA-VPVIGNGDVTSPELAERMIHETGCDGVMIGRASLGNPWLFAVISRR 253 Query: 250 IFGSSD--TDADPVAVVRAMYPYIERELS-QGTYLGHITRHMLGLFQGIPGARQWRRYLS 306 + +R ++E + + GH+ + ++ +G P + R ++ Sbjct: 254 WGRGARQGDCPGWNDFLRTAEAHLESFRTMRPRADGHLKKLLIWYSKGCPDSAGLRCRIA 313 >UniRef50_A9A4W7 Putative TIM-barrel protein, nifR3 family n=1 Tax=Nitrosopumilus maritimus SCM1 RepID=A9A4W7_NITMS Length = 320 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 136/321 (42%), Gaps = 25/321 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK----------GDY 56 +S R +APM +D R + + L+ TE + +II + ++ Sbjct: 3 PKFSSRAFLAPMAGVSDPALRLQCKKMGA-GLVVTEFTSIHSIIAKEEQLKENMKTIQEF 61 Query: 57 LAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 + +SE+E P+++QL GSD AL + A + E +D I+ N+GCP+ + M G L+ Sbjct: 62 IEFSEQERPISVQLFGSDLYALEKAATIVEPY-FDIIDYNMGCPAPHITQQMAGGALLQE 120 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 L + + + V PVT+K R G+ D +FL I ++ +M H R Sbjct: 121 VNLTQQIFETLVNAVKKPVTLKIRSGVTDAS--KFLFRDIAEIAEDQGIQMITFHPRTV- 177 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGR 234 D+ + +LK + ++ + NG I + E+AK L D VM+GR Sbjct: 178 -------SQGYSGSADWKLIKELK-EISNIPVVGNGDITTPEDAKMMLDETGCDYVMIGR 229 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 A NP + ++ + S + + + + Y+ +I + +G Sbjct: 230 GAMGNPFLFEQINDYLKTGSYKEYSFKDRLDSFFDYLHLTNQYKIKFSNIKSQAMRFTKG 289 Query: 295 IPGARQWRRYLSENAHKAGAD 315 + G + R ++ + + + Sbjct: 290 LKGGSKLRSKITFSKNLEDLE 310 >UniRef50_D0WEP2 tRNA-dihydrouridine synthase B n=2 Tax=Slackia RepID=D0WEP2_9ACTN Length = 318 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 81/328 (24%), Positives = 128/328 (39%), Gaps = 30/328 (9%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEHPVALQLGGSD 74 M D R + L YTEM+++ A+ L +E E VA+QL G + Sbjct: 1 MAGVNDIVFRRLCLEQGCD-LTYTEMISSKALSFANEKTRHLLDLAEGERRVAIQLFGHE 59 Query: 75 PAALAQCAKLAEARGYDE---INLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 P +A+ A E D I++N+GCP+ ++ G+ LM + L A V+ + V Sbjct: 60 PKVMAREAAWVEDELGDALALIDINMGCPAHKIVKKGDGSALMRDQDLAASIVRDVARAV 119 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 S PVTVK R G ++ +H R A P Sbjct: 120 SCPVTVKFRRGFGAEEETAVDFGLRM---EDAGAAAVTVHGRTA--------AQMYRGPS 168 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAVDRE 249 ++ V ++K + + NG I S A + DGVM+ R A NP I A V R Sbjct: 169 EWECVARVKAALS-VPVIGNGDIVSGASAADMVRATGCDGVMIARGAQGNPWIFADVRRV 227 Query: 250 IFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL 305 + G D V + R + L + ++ +H++ G+PGA + R L Sbjct: 228 LDGMPPAPDPTRQDRVEMARRHIHLLSSRLGNT--VVYMRKHVMWYLHGVPGASRARAAL 285 Query: 306 SENAHKAGADI---NVLEHALKLVADKR 330 + D +L A ++ + R Sbjct: 286 NACVTVDDFDRVLDELLADAARIEEEDR 313 >UniRef50_B2ULM0 TIM-barrel protein, nifR3 family n=3 Tax=Verrucomicrobia RepID=B2ULM0_AKKM8 Length = 334 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 74/334 (22%), Positives = 128/334 (38%), Gaps = 33/334 (9%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE---HPVAL 68 +APM TD R + L + ++ TE V+ I+ Y++ E P+ + Sbjct: 18 PLFLAPMAGVTDPIFRTICKELGVD-VMVTEFVSAEGILQAWERNRRYTKIENAHRPIGI 76 Query: 69 QLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 QL G+D + + A++ D I++N GCP +V G+ L+ + L+A + Sbjct: 77 QLFGADGNHMGEAARIILDHEKPDFIDINFGCPVPKVVGKNGGSSLLKDLPLLASVAGGV 136 Query: 128 RDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 V IPVT K RIG D Q + M IH R + Sbjct: 137 VKAVGERIPVTAKIRIGWDFQS---LCAMDACRLLENEGISMITIHGRT--------RSQ 185 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGIL 243 + ++ + + R + + NG I + + ++ + GVM+GR A +NP I Sbjct: 186 QYSGTANWDIIDECARAMS-VPVIGNGDISTPQAVAYVKENTAVSGVMIGRAAMENPWIF 244 Query: 244 AAVDRE-IFGSSDTDADPVAVVRAMYPYIERELSQGTY------LGHITRHMLGLFQGIP 296 + G+ DP + + L Y + H+ +L +G P Sbjct: 245 GDAKYYLLHGTMPPARDPQEKAALILRHARMALESRHYGDELHTMRHMRSRILAYTKGFP 304 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 GA++ R L + LE L + ++ Sbjct: 305 GAKEMRSRLVRVSSMPE-----LEDLLSKLPRQK 333 >UniRef50_C1FGA1 Predicted protein (Fragment) n=4 Tax=Mamiellales RepID=C1FGA1_9CHLO Length = 401 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 139/354 (39%), Positives = 186/354 (52%), Gaps = 37/354 (10%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKG----DYLAYSEEEHPVAL 68 SVAPM+D+T H R+ RLLSR+T LYTEM ++H YL + HP L Sbjct: 7 LSVAPMMDYTTAHFRHLCRLLSRHTWLYTEMEVDQTLVHTDHPRLDRYLDFPTATHPSVL 66 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQLVADCVKAM 127 QLGGSDP +A+ +A GYDEINLN GCPS +V FGA LM +LV D V AM Sbjct: 67 QLGGSDPETMARATAVAAPYGYDEINLNCGCPSPKVAGKGAFGAALMLEPELVRDVVAAM 126 Query: 128 RDVV-SIPVTVKTRIGIDDQDSYEFLCDFINTVSGK------GECEMFIIHARKAWLSGL 180 R+ PVTVK RIG+DD DSY+ LC F+ TV+ +F IHARKA L+GL Sbjct: 127 RENSGGAPVTVKCRIGVDDHDSYDDLCRFVETVACAMVPTRTDGRPLFAIHARKALLAGL 186 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMD---------GVM 231 SP ENR +PPL Y Y L RDFP + +NGGI +LEEA + + G M Sbjct: 187 SPAENRTVPPLRYEWAYALARDFPEVAFVVNGGIDTLEEAAEVARGVGVPTGGGRLVGTM 246 Query: 232 VGREAYQNPG-ILAAVDREIFG-SSDTDADPVAVVRAMYPYIERELS------QGTYL-- 281 +GR + +P +L+ D +FG S+ ++ Y + G + Sbjct: 247 IGRAVHADPWGVLSDADVRVFGAESNPRTSRRDLLNEYVKYCDATRGRFGTTKDGYSVPS 306 Query: 282 -GHITRHMLGLFQGIPGARQWRRY----LSENAHKAGADI-NVLEHALKLVADK 329 H+ + LF G P A+ WRR L E+A + ++LE L +++D+ Sbjct: 307 TRHLMHPLQNLFLGEPNAKVWRRRVDEALKEDARNPDVTVGDILERTLGVLSDE 360 >UniRef50_B1C9Q3 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9Q3_9FIRM Length = 329 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 132/329 (40%), Gaps = 28/329 (8%) Query: 11 GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE------EEH 64 + +APM T R F+R + + +EMV+ + + + E ++ Sbjct: 16 NKAILAPMAGVTTLPYRLFMREMGCK-IFISEMVSAKGLYYKSKNTFPLMETNELEHKDS 74 Query: 65 PVALQLGGSDPAALAQCAKL-AEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 +Q+ GS+P + + + +D I++N+GCP ++ N G+ L+ + Sbjct: 75 VTGIQIFGSEPEIMGEITERYINDTAFDFIDINMGCPMKKIVNNGDGSALLKDLDKANKV 134 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 V+ ++ S PV+VK R+G E + + I G +M +H R + Sbjct: 135 VREVKSASSKPVSVKVRLGF-----NENIIEDIIKAIEDGGADMITVHGRT--------R 181 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPG 241 E +DY + + K + + NG + + +AK + DGVM+GR A +P Sbjct: 182 EQVFTGEVDYDGIKKAKETAS-VPLIANGDLDNYLKAKEKMDYTGADGVMIGRGANYDPF 240 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIEREL---SQGTYLGHITRHMLGLFQGIPGA 298 I + + I G ++ + A + E L + +++ +GI + Sbjct: 241 IFSQFNECISGKKVSEYSLRDKIDAARKHFEIHLKYSKDKKKVIEFRKYLYWYIKGIKNS 300 Query: 299 RQWRRYLSENAHKAGADINVLEHALKLVA 327 + R ++ N ++ + ++ Sbjct: 301 AKIRNSIN-NVNEIDQVYEIFNRIDDILE 328 >UniRef50_Q54CU9 tRNA-dihydrouridine synthase 3-like n=1 Tax=Dictyostelium discoideum RepID=DUS3L_DICDI Length = 671 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 59/297 (19%), Positives = 113/297 (38%), Gaps = 21/297 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 EK +++ + +AP+ + R + L + + EM T ++ G L Sbjct: 316 EKKRINFENQLILAPLTTVGNLPFRRICKRLGAD-ITIGEMALTTKLLEGTKSELALLKR 374 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +Q+ GS A +CA+ E D +++N GCP D V N GA LM + Sbjct: 375 HPCEDKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALMERPK 434 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 V ++ + +S P T+K RIG + I ++ G C +H R Sbjct: 435 KVEQLLRGISSSLSCPTTIKIRIG--KSEDAPTAHKLIPSLGEWGACA-VTLHGR----- 486 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREA 236 + R ++ V Q + + + NG I + ++ + +M+ R A Sbjct: 487 ---SRAQRYSRLANWDYVKQCS-EVSSIPLIGNGDIYNYQDVVNIYDSSKVSSIMIARGA 542 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P I + + + ++ + +R Y ++ S + + + +L Sbjct: 543 LIKPWIFTEIKEKREW-DISASERLDFIRDFANYGLDHWGSDRIGVDNTRKFLLNWL 598 >UniRef50_Q54XQ6 tRNA-dihydrouridine synthase 1-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54XQ6_DICDI Length = 435 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 59/294 (20%), Positives = 114/294 (38%), Gaps = 32/294 (10%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSE 61 +V S + +VAPM+D T R R + ++YT M + + DY + Sbjct: 46 RNVLKSPKKTVAPMVDHTFLAFRMLCRKYGAD-MVYTPMFHSKNFATCKTYRRDYWSTCP 104 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E+ P+ +Q G++P + + AK E D I+LN+GCP + G +G+ L+ ++ Sbjct: 105 EDRPLVVQFCGNEPEWVVKAAKYIEDH-CDAIDLNLGCPQQIARRGNYGSFLLDKPHIIL 163 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 V+ + + +P+ K R+ + D+ + + C++ IH R G Sbjct: 164 PIVQELHKHIKVPIFCKIRLLPNLDDTIKLALQL-----QEAGCQLLTIHGRTKEQKG-- 216 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQN 239 ++ + ++ + + NG + E+ L+ DGVM N Sbjct: 217 ----HNSGIANWKAIRTIREQLS-IPVIANGSVVQYEDIDRCLEETGADGVMSAEGILAN 271 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ 293 P + + I+ V R + E T + H+ + + Sbjct: 272 PSFFSGLKVPIY----------QVAREYIDFTEIY---KTSIHVTRSHIFKMLK 312 >UniRef50_UPI000058804E PREDICTED: similar to MGC53781 protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI000058804E Length = 655 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 58/284 (20%), Positives = 104/284 (36%), Gaps = 20/284 (7%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEEEHPVALQLGG 72 AP+ + R + L + + EM ++ G+ L E +QL G Sbjct: 287 APLTTVGNLPFRAVCKKLGAD-ITCGEMAMCTNLLQGQSSEWALLRRHPSEDIFGVQLCG 345 Query: 73 SDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 P + +CA+L D I++NVGCP D V + G+ LM + V+ M V+ Sbjct: 346 GFPDTMTRCAELLNDRLDIDFIDINVGCPIDLVYHKGAGSGLMNRMGKFQEIVRGMSSVL 405 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 IP+TVK R G+ + + + + G + +H R +E R Sbjct: 406 DIPLTVKMRTGVHNDNPVA--HKIVRRIYDWG-ASVVTVHGRT--------REQRYSKLA 454 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAVDRE 249 D+ + + NG I S E++ + G M+ R A P I + + Sbjct: 455 DWDYLKDCVQAADPHPFIGNGDILSYEDSNFFREQSGATGQMIARGALIKPWIFTEIKEQ 514 Query: 250 IFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 + ++ +++ + S + R +L Sbjct: 515 RHW-DISSSERFDILQDYINLGLLHWGSDSEGVRKTRRFLLEWL 557 >UniRef50_P41504 Probable tRNA-dihydrouridine synthase n=93 Tax=Alphaproteobacteria RepID=DUS_RHILP Length = 317 Score = 260 bits (664), Expect = 7e-68, Method: Composition-based stats. Identities = 63/296 (21%), Positives = 114/296 (38%), Gaps = 20/296 (6%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY--SEEEH 64 + R +APM TD R L+ TEMV + +++ + + + Sbjct: 1 MSVRNRVVLAPMSGVTDMPFRELAWRFGA-GLVVTEMVASRELVNDTAESWSRLKAAGFR 59 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P +QL G + +A+ AK+A G D I++N+GCP+ +V G G+ LM + + Sbjct: 60 PHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLI 119 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +A V IPVT+K R+G D+ I + ++ IH R Sbjct: 120 EATVKAVDIPVTLKMRLGWDENSINA---PDIARRAEASGIQLVTIHGRTRM-------- 168 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGI 242 D+ + + R+ + + NG +++ +A+ L+ D VM+GR P Sbjct: 169 QFYEGRADWDAIRAV-REVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRPWH 227 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 + D + Y + + + H +H+ + A Sbjct: 228 AGVLAGAA---EPRREDIADIAVEHYRMMLDFYGEAVAIRHARKHLGWYLERFAPA 280 >UniRef50_C6XJQ7 Dihydrouridine synthase DuS n=2 Tax=Hyphomonadaceae RepID=C6XJQ7_HIRBI Length = 337 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 74/330 (22%), Positives = 134/330 (40%), Gaps = 24/330 (7%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---L 57 M DV + +APM TD R ++ TEM+ + G+ D + Sbjct: 1 MISVGDVEINDAVFLAPMSGATDAPFRRQASRFGAP-VVITEMIAGSELATGRQDMVWRI 59 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 E P +QL G DP + + A+++ + G D I++N+GCPS +V G GA LM + Sbjct: 60 TKPENTFPFVVQLAGRDPKWMYEAARISASAGADIIDINMGCPSRQVTGGQSGAALMRDL 119 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 L + + A R+ +PV+VK R+G DD + + ++ +H R Sbjct: 120 DLARELIIAAREGGGLPVSVKMRLGWDDDTLNAPAL---AKICEEEHVKLITVHGRT--- 173 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGRE 235 + D+ +V ++K +L + +NG I S + AK L DGVM+GR Sbjct: 174 -----RCQFYTGKADWNKVKEVK-LASNLPLIVNGDIDSSKTAKQAILLSQADGVMIGRA 227 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYI---ERELSQGTYLGHITRHMLG-- 290 A P +L + ++ + + ++ + + +H+ Sbjct: 228 ALGRPWLLGKIASDLANRPYIEPTWSEKLSSLCEQVSDSVLLYGDRLGVRVFRKHLAAFI 287 Query: 291 -LFQGIPGARQWRRYLSENAHKAGADINVL 319 + I + R L + ++ +V+ Sbjct: 288 DYSKEIRLNTEDRNELRGRFCRISSENDVI 317 >UniRef50_UPI00017B0A55 UPI00017B0A55 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A55 Length = 669 Score = 259 bits (663), Expect = 9e-68, Method: Composition-based stats. Identities = 64/296 (21%), Positives = 114/296 (38%), Gaps = 20/296 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAY 59 EK V+++ + + P+ + R + + + EM ++ G+ L Sbjct: 317 EKKQVNFNDKLYL-PLTTCGNLPFRRVCKRFGAD-ITCGEMAMCTNLLQGQQSEWALLKR 374 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E E +Q+ G P + +CA+L D +++N GCP D V G LM + Sbjct: 375 HESEDVFGVQIEGCFPDTMTRCAELINNNTEVDFVDINSGCPIDLVFKKGGGCGLMTRTR 434 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + VK M V+ +P+TVK R G+ Q+ I + G M +H R Sbjct: 435 KFEEIVKGMNYVLDVPLTVKIRTGV--QEKTNIAHKLIPEMKKWG-VSMITLHGR----- 486 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA-KAHLQHMDGVMVGREAY 237 +E R D+ + + + + NG I S E+A A + G+M+ R A Sbjct: 487 ---SREQRYTKLADWDYISTCSKLASPVPLFGNGDILSYEDAMMAKETGVSGIMIARGAL 543 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P I + + + + + ++R + +E S + ML Sbjct: 544 IKPWIFTEIKEKRHW-DISSGERLDILRDFTNFGLEHWGSDTRGVEKTRSFMLEWL 598 >UniRef50_B2RZT4 NIFR3-like protein n=23 Tax=Borrelia RepID=B2RZT4_BORHD Length = 335 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 108/330 (32%), Positives = 180/330 (54%), Gaps = 10/330 (3%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHP 65 + + + SVAPM+ TD H RY +RLLS+ LYT M++ +II G + + + P Sbjct: 1 MLINRKISVAPMVAITDEHFRYMIRLLSKKVTLYTPMISAKSIIMGNLNKVVKQTPTDSP 60 Query: 66 VALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 +A+Q+ S A+ ++ E +DE NLNVGCPS +VQN +GACLM V + Sbjct: 61 IAIQIATSCENDAAKAIEILENKFNFDEYNLNVGCPSSKVQNANYGACLMQTPTQVGKIL 120 Query: 125 KAMRDVVSIPVTVKTRIGI------DDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 KAM+ + PV++K RIGI +++Y L F+ + E + F +HAR A L+ Sbjct: 121 KAMKKNTNKPVSIKHRIGIRNNKREYHEENYTELQQFVEKIME-YEIKNFTVHARIAILN 179 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQ 238 G SPK+N+ IP L + VY+LK++ ++ + +NGGIKS + K HL ++D VM+GR + Sbjct: 180 GYSPKDNQNIPKLRHDFVYRLKQEHKNIFIEVNGGIKSSDHIKTHLSYVDSVMIGRAVAK 239 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 +P ++A + RE + ++ M YI+ + + I +H++ + A Sbjct: 240 DPYLIAKISREFLEEKEKIPTREEILLKMVEYIKEY-DECLSISTILKHIMSIVFAKENA 298 Query: 299 RQWRRYLSENAHKAGADINVLEHALKLVAD 328 ++R+ LS K + +L A++ + + Sbjct: 299 CKFRQTLSAPFPKNLKNHEILLSAIEHLRE 328 >UniRef50_B9NQS6 NifR3 family protein n=3 Tax=Rhodobacteraceae RepID=B9NQS6_9RHOB Length = 364 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 132/326 (40%), Gaps = 23/326 (7%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE---EEH 64 H + +APM TDR R + ++ +EMV + ++ K +E + Sbjct: 46 HLTPPVLLAPMAGITDRPFRDLVMRFGA-GMVVSEMVASQEMVQAKPGVRERAELSADVE 104 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 A+QL G + +A+ A+ RG I++N+GCP+ +V NG G+ L+ + Sbjct: 105 NTAVQLAGREAHWMAEAARQVADRGARVIDINMGCPAKKVTNGYSGSALLKTPDHALTLI 164 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +A+ V IPVT+KTR+G DD + + +M IH R + Sbjct: 165 EAVVAAVDIPVTLKTRLGWDDS---LLNAPDVARRAQDAGIQMVTIHGRT--------RC 213 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGI 242 D+ + +K + + NG I A+ L DGVMVGR A P + Sbjct: 214 QFYKGRADWQAIGAVKEAVS-VPVIANGDITGPGAARTALDQSGADGVMVGRGAQGRPWL 272 Query: 243 LAAVDREIFGSSDTDAD----PVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 LA + +++G + D + +VR Y + L +H+ Sbjct: 273 LAQICHDLYGIAPPDIPTGSALIDMVRGHYQAMLAFYGTDLGLRVARKHLGWYMDDAGTP 332 Query: 299 RQWRRYLSENAHKAGADINVLEHALK 324 RR + + G +++L AL Sbjct: 333 ATLRRAVLTSRDT-GEVLHLLGDALN 357 >UniRef50_C5CI99 Dihydrouridine synthase DuS n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CI99_KOSOT Length = 314 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 132/334 (39%), Gaps = 30/334 (8%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS 60 MPE +APM +TD R + +++EM++ ++ Sbjct: 1 MPE-------NEVGLAPMAGYTDEAMRAISLEWGAD-FVFSEMLSVEGVLRNDRTTQKII 52 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E P +QL G+D A LA AK + ++N GCP +V GA L+ + + Sbjct: 53 P-ETPCRIQLFGNDIARLAMAAKAVLDK-ATWFDINAGCPVKKVVKRGAGAALLREPEKL 110 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 ++ ++ + +PV+VK R+G D + + + + + +H R Sbjct: 111 NAMIQTLKGISDLPVSVKIRLGWDKNE----VVKIVERLVESRPFAIM-VHGRTVV---- 161 Query: 181 SPKENREIPPLDYPRVYQLKRDFP--HLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREA 236 D+ + ++ + + + +G + S E+ + +DGV+V R A Sbjct: 162 ----QGYSGVADWESIGKVVKICKPHGIKVYGSGDVFSPEKIVEAFEKYGVDGVLVARGA 217 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIE---RELSQGTYLGHITRHMLGLFQ 293 NP I + S T DP ++ +++ + + +H +G + Sbjct: 218 IGNPWIFSQYKELKQKGSYTVPDPHERLKVFAKHLKKLIELKGEERAIIESRKHFVGYCK 277 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALKLVA 327 G+ A + RR + +K + ++++ L + + Sbjct: 278 GLLNATKMRREYMKLKNKTDVENFLMQYGLDIKS 311 >UniRef50_Q17M24 tRNA-dihydrouridine synthase n=2 Tax=Diptera RepID=Q17M24_AEDAE Length = 578 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 116/301 (38%), Gaps = 24/301 (7%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---A 58 PE+ +++ + ++P+ + R + + + EM + II+G Sbjct: 220 PERKKINFKDKLYLSPLTTVGNLPFRRICKEYGVD-ITCGEMACSVPIINGMMQEWALTK 278 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNA 117 E +Q+ G + ++ ++ D ++LN+GCP D + N G+ L+ Sbjct: 279 RHPSEDLFGVQICGHNQKLVSYATQVIAEHADVDFVDLNLGCPIDLIFNQGGGSALLRRR 338 Query: 118 QLVADCVKAMRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK 174 ++ +++ ++ TVKTR+GI + + G + IH R Sbjct: 339 NILEVMIQSCSRILADYDKEFTVKTRMGIYANK--YVAHELVPKFEEWG-ASLVTIHGRT 395 Query: 175 AWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEE---AKAHLQHMDGVM 231 KE R D+ + Q + + + NG I ++ AK + GVM Sbjct: 396 --------KEQRYTKKADWDYIRQCAQQAKSIPIYGNGDIFCYQDYLDAKERAPELAGVM 447 Query: 232 VGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLG 290 VGR A P + + + + ++ + +++ Y +E S + + R +L Sbjct: 448 VGRGALIKPWVFQEIKEQ-KNLDPSSSERMDMLKRYVNYGLEHWGSDTKGVENTRRFLLE 506 Query: 291 L 291 Sbjct: 507 W 507 >UniRef50_B6YQB2 tRNA-dihydrouridine synthase n=36 Tax=Bacteria RepID=B6YQB2_AZOPC Length = 340 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 68/332 (20%), Positives = 138/332 (41%), Gaps = 30/332 (9%) Query: 10 SGRFS-VAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEHP 65 S R +APM T+ + R + + ++YTE ++ A+I L EHP Sbjct: 16 SNRLVFLAPMEGVTNVYFRSLCKSFGAD-MVYTEFISADALIRHVDKIQGKLKIINSEHP 74 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +A+Q+ G D + + A++ E D ++LN GCP ++ GA ++ + + + + Sbjct: 75 IAVQIYGQDKDTMVEAARICEEMQPDFLDLNFGCPVKKIVRRNAGAGMLRVPKKMIEITQ 134 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 + V+IP+TVKTR+G D+ + + D + G + IH R Sbjct: 135 QVVHSVNIPITVKTRLGWDENS--KIIVDLAERLQDTG-IALLTIHGRTG--------SQ 183 Query: 186 REIPPLDYPRVYQLKRDFP-HLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGI 242 D+ + +K + ++ + NG I S ++ + +D VM+GR + P I Sbjct: 184 MYSGKADWNLIGAVKNNPRMYIPICGNGDIVSPQQCEQAFNRYGVDAVMIGRASIGAPWI 243 Query: 243 LAAVDREIFGSSDTDADPVA----VVRAMYPYIERELSQGTYLGHITRHMLG--LFQGIP 296 V + + V++ +L + + + RH++ LF+ + Sbjct: 244 FQEVKYYLKYNDLAPKKSFEYYLSVLKQQILQSVSQLGERQGILNSRRHIVASPLFKKMS 303 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVAD 328 + L++ A ++ L + +++ Sbjct: 304 NFK-----LTKIAMLQAITVSSLFEIMDNISN 330 >UniRef50_C1SJZ7 tRNA-dihydrouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJZ7_9BACT Length = 340 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 65/325 (20%), Positives = 135/325 (41%), Gaps = 21/325 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEE 62 + + AP+ T R LR + L+YTEMV+ + YL+ +E Sbjct: 13 RILNKNKLIAAPLAGVTTPPFRKLLRKYF-DGLIYTEMVSVEGVRRKADRTLSYLSITES 71 Query: 63 EHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 + P+ +QL GS P A + ++ + + +++N+GCP +V G +M + Sbjct: 72 DQPIGVQLFGSKPEAYTEAIEVVQDYIKAEFVDINMGCPVKKVLKSGSGCAMMKDPVNSG 131 Query: 122 DCVKAMRDVV-SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 V A + + +P+TVK R+G D ++ + + ++ + E +H R Sbjct: 132 KIVAAAKKALGDVPLTVKIRLGWDKKNLNY---NEMIKIAYEEGAEAVTVHGRT------ 182 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL-QHMDGVMVGREAYQN 239 K ++Y + K + L + NG + + + L +DGVM+GR + Sbjct: 183 --KTEMFSGVVNYDLIADAKANA-KLPIIGNGDVVDVATYEKMLATGVDGVMIGRGMMKQ 239 Query: 240 PGILAAVDREIFGSSDTDADPV-AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 P + ++ S D + +++ + + + +L + ++++ +G+PGA Sbjct: 240 PWLFESILNGRDPSGYMTYDKLYELIKELVRNEKIYKGEMFFLETVKKYIVWFLKGMPGA 299 Query: 299 RQWRRYLSENAHKAGADINVLEHAL 323 R L + + +L+ Sbjct: 300 AALRNKLYMCPTETEMFV-MLDEYF 323 >UniRef50_UPI0001792282 PREDICTED: similar to tRNA-dihydrouridine synthase n=1 Tax=Acyrthosiphon pisum RepID=UPI0001792282 Length = 578 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 61/296 (20%), Positives = 125/296 (42%), Gaps = 21/296 (7%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSE 61 ++W + +AP+ + R + + + +EMV + +++ G E Sbjct: 225 KKINWKNKLYLAPLTTVGNLPFRRICKEFGAD-ITCSEMVLSSSLLQGHNQEWALTKRHE 283 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E +Q+ G++P LA+ A++ + D ++LN+GCP D++ G+ L+ ++ + Sbjct: 284 TEDIFGIQVCGNNPYMLAKSAQVLQENVDMDFLDLNLGCPLDQIYKQGAGSGLLLRSKKL 343 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 C+K+MR V+ +P+TVKTR G++ + D I G + +H R Sbjct: 344 EVCLKSMRTVLDVPLTVKTRSGVNKDQNVA--HDLIPMFKDSG-VSLITVHGR------- 393 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKA---HLQHMDGVMVGREAY 237 ++ R D+ V + + + + +G I S E+ + G M+GR A Sbjct: 394 -SRDQRYTKMADWNYVNECAKLASPVQVFSSGDIMSYEDYVDSKLQFPDITGAMIGRGAL 452 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 P I + E + + + +++ Y +E S + + +L Sbjct: 453 IKPWIFKELK-ENCHWDISSNERLEILKKYVKYGLEHWGSDTRGVETTRKFLLEWL 507 >UniRef50_B8DSX5 Possible NifR3-like protein n=15 Tax=Bifidobacterium RepID=B8DSX5_BIFA0 Length = 417 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 73/346 (21%), Positives = 126/346 (36%), Gaps = 33/346 (9%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEE 62 DV + ++PM T+ R + L EMVT A++ L ++ Sbjct: 45 DVMVNTPVMLSPMAGVTNWPFRVLCEEYGPDGLYVAEMVTARALVERNPKALRLCRFAPS 104 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E +LQL G +P+ + Q A+ G D ++LN GCP +V G+ L L Sbjct: 105 ERIRSLQLYGVNPSIMEQAARFLVDNGMMDHLDLNFGCPVPKVTRRGGGSALPWKTDLFT 164 Query: 122 DCVKAMRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + V+ + V +IPVT K R+G+D + ++ + C +HAR Sbjct: 165 EIVQRVVAVCEPANIPVTAKIRVGLDHEHETFLE---AGRIAQEEGCSAVTLHART---- 217 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREA 236 D+ R+ +L + + NG I E+A A + GV +GR Sbjct: 218 ----TAEYYGGHSDWCRIGELVSTL-DIPVFGNGDIWGAEDAIAMVNETGCAGVAIGRGC 272 Query: 237 YQNPGILAAVDREIFGSS----DTDADPVAVVRAMYPYIEREL--SQGTYLGHITRHMLG 290 P + + GS T + ++ + + + + +H+ Sbjct: 273 QGRPWLFGNIGNAFAGSDVRINPTLGEVGRIIMRHAELLTEFYDGDERMAVHDLRKHVAW 332 Query: 291 LFQGIPGARQWRRYLSENAHKAGADINV------LEHALKLVADKR 330 +G P RR E V +E+ ++V R Sbjct: 333 YLKGFPVGGSTRRAFMECESLKDVREQVDALDPNIEYPERVVDQPR 378 >UniRef50_C7GZ00 tRNA-dihydrouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ00_9FIRM Length = 336 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 72/335 (21%), Positives = 132/335 (39%), Gaps = 30/335 (8%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYS 60 D+ F +AP+ +TD R L+Y+EMV+ +I+ + L + Sbjct: 8 IGDIELPSPFLMAPLAGFTDNAVRTIALEFGA-GLVYSEMVSAKGLIYEQKNTEELLDFR 66 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 + +A+Q+ GSDP A+A + E +G +++N+GCP ++ GA LM ++ Sbjct: 67 GADGFIAIQIFGSDPDAVAHGIQCIENKGNAIVDINMGCPMQKIVKSGSGAALMKRPDII 126 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 D VK + PVT K RIG D+ + +H R A Sbjct: 127 YDMVKDAVKITQKPVTAKIRIGWDNNNINAVD---CAKAIESAGASAVAVHGRTA----- 178 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQ 238 + + ++ + +K+ + + NG IKS +EA + D VM+GR A Sbjct: 179 ---KQKYEGSVNRDVIASVKQSVS-IPVIGNGDIKSAKEALEFMDETGCDMVMIGRGAIG 234 Query: 239 NPGIL-------AAVDREIFGSSDTDADPVA-----VVRAMYPYIERELSQGTYLGHITR 286 P I + + + T+ +P A ++ + + L + + Sbjct: 235 KPWIFKSCNMALSEIRKGKSIDEITEYEPCADEILNTLKKLIDLTVSYKGEKRALLELRK 294 Query: 287 HMLGLFQGIPGARQWRRYLSENAHKAGADINVLEH 321 + + G + +R+ L E K + E+ Sbjct: 295 KLSKYLKNTSGVKDYRKRLYEAGTKIELMGIIYEY 329 >UniRef50_Q9VIS4 CG10463 n=12 Tax=Drosophila RepID=Q9VIS4_DROME Length = 604 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 65/309 (21%), Positives = 116/309 (37%), Gaps = 26/309 (8%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 K V + + ++P+ + R + + + EM ++ G G Sbjct: 249 HKPAVDFREKLVLSPLTTLGNLPFRRICKEFGAD-ITCGEMACAQPLLKGMGQEWALTKR 307 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 + E +QL G++P L Q A++ D I+LN+GCP D + G+ LM Sbjct: 308 HQSEDVFGVQLCGNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIYQQGGGSALMRRTN 367 Query: 119 LVADCVKAMRDVVS-IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 ++ V++ + +P TVK R GI S + + V G +H R Sbjct: 368 ILELTVRSCAALSDRLPFTVKMRTGIYADKSVA--HELLPLVEEWG-ASAVTLHGR---- 420 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL---QHMDGVMVGR 234 +E R ++ + + + + NG I S E+ H+ VM+GR Sbjct: 421 ----SREQRYTKHANWAYIEECAAKAKCMPVIGNGDILSYEDYMERRTLAPHVCSVMIGR 476 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHML---- 289 A P I + + S + +++ Y +E S + R +L Sbjct: 477 GALIKPWIFQEIKEKQAWSPSSGQ-RYEMLQKFCNYGLEHWGSDTKGVETTRRFLLEWQS 535 Query: 290 GLFQGIPGA 298 L++ IP A Sbjct: 536 FLYRYIPEA 544 >UniRef50_A5EVV4 Dihydrouridine synthase n=2 Tax=Cardiobacteriaceae RepID=A5EVV4_DICNV Length = 318 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 75/321 (23%), Positives = 132/321 (41%), Gaps = 22/321 (6%) Query: 1 MPEKTDVHWSGRFSV-APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGA-IIHGKGDYLA 58 M H+S + APM +D R + + EMV + L Sbjct: 1 MLTLGRFHYSKPVVLLAPMAGISDLPYRSLCQRFGSHY-TIAEMVDARPQFLAMPESQLR 59 Query: 59 YSEEEH---PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMG 115 ++ P +QL G DP +A+ A++ +A G D I++N+GCP+ +V G+ L+ Sbjct: 60 LQFDDDARFPKIVQLVGGDPYLMAETAQVMQALGCDVIDINMGCPAKKVGKQNAGSALLS 119 Query: 116 NAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 + V + + VVSIPVT+KTR+G ++Q + + ++ +H R Sbjct: 120 DLPQVEKILAQVTRVVSIPVTLKTRLGFNEQT---MTIETVAKIAENTGVAALTVHGRT- 175 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVG 233 + R Y + ++K L + +NG I + +A+ +Q DGVM+G Sbjct: 176 -------RAQRFNGTAHYDEIGRVKAQ-TSLPIIVNGDITTTAQAQDLIQQFGFDGVMIG 227 Query: 234 REAYQNPGILAAVDREIF-GSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 R A NP +LA + + + AV+ + + Q L +H+ Sbjct: 228 RAACGNPWLLAHMRCALDCDFALPAISRRAVISEHISALHQLY-QRQGLLIARKHLHWYL 286 Query: 293 QGIPGARQWRRYLSENAHKAG 313 +P WR+ ++ A Sbjct: 287 APMPRYDFWRQEINTATDLAA 307 >UniRef50_Q9VPM1 CG3645, isoform A n=9 Tax=Diptera RepID=Q9VPM1_DROME Length = 505 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 67/309 (21%), Positives = 120/309 (38%), Gaps = 35/309 (11%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHP 65 S R+ VAPM+D ++ R R L Y+ M + D L E+ P Sbjct: 26 GSPRYVVAPMVDQSELAWRMLCRRYGAE-LCYSPMYHANLFATDPKYRKDALQTCPEDRP 84 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + +Q G+D + A LA+ D +++N+GCP + G +G+ L +L+ + V Sbjct: 85 LIIQFCGNDAQQILDAALLAQDH-CDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVS 143 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 + +++PVT K RI D + + + + C++ +H R G Sbjct: 144 TLHAKLAVPVTCKIRIFEDLEKTIRYA-----KMLEAAGCQLLTVHGRTREQKG------ 192 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGIL 243 ++ + +++ + M NG I +L++ L +DGVM NP I Sbjct: 193 PLTGVANWNYIKNVRQHI-KIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIF 251 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQ---GIPGARQ 300 V ++ + + Y+E I H+ LF I + Sbjct: 252 KGVSPPVW-------------QMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSE 298 Query: 301 WRRYLSENA 309 R+YL+ Sbjct: 299 LRQYLATAN 307 >UniRef50_Q4N9T6 TRNA-dihydrouridine synthase A, putative n=2 Tax=Theileria RepID=Q4N9T6_THEPA Length = 471 Score = 257 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 139/369 (37%), Positives = 194/369 (52%), Gaps = 53/369 (14%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCR----------YFLRLLSRNTLLYTEMVTTGAII 50 M T H +APMLD T H R F+RLL+R T L+TEM ++I Sbjct: 74 MRNGTVSHSKPSLQIAPMLDVTYLHFRYFMDFKFDFRQFMRLLTRKTQLWTEMFVASSLI 133 Query: 51 HGKG----DYLAYSEEEHPVALQLG----------GSDPAALAQCAKLAEARGYDEINLN 96 + +L + E EHP+ QLG G+ P L + ++ + GYDEINLN Sbjct: 134 NASNESVSRWLKFEENEHPIVAQLGIFYQHKIVPGGNCPETLVEAGRILKKFGYDEINLN 193 Query: 97 VGCPSDRVQNGM-------------FGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGI 143 GCPS RV FGA LM +LV D M + +PVTVKTR+G+ Sbjct: 194 AGCPSPRVSGKGIYKFMLKLFNLGCFGASLMKEKELVRDIAHHMLRELEMPVTVKTRLGV 253 Query: 144 DDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDF 203 D+ DSYEF+ DF++TVS G C+ FIIH+RKAWL G++PK+NR IPPL Y +VY+L+RDF Sbjct: 254 DEFDSYEFVRDFVSTVSESG-CDHFIIHSRKAWLKGINPKQNRTIPPLQYEKVYRLQRDF 312 Query: 204 PHLTMSINGGIKSLEEAKAHLQ-----------HMDGVMVGREAYQNPGILAAVDREIFG 252 PHL +INGG K++E L ++GVM+GR AY+NP +L+ VD+ I+G Sbjct: 313 PHLKFTINGGFKTMESILEALNSENLDSNNNPHKLNGVMIGRLAYENPCLLSNVDKLIYG 372 Query: 253 --SSDTDADPVAVVRAMYPYIERELSQ--GTYLGHITRHMLGLFQGIPGARQWRRYLSEN 308 + DT ++ YI+ + I + +LG+F G G + +R+ LS Sbjct: 373 VENPDTCYTRRILLENYANYIDENQVDTANLNISLIVKPILGVFHGEQGNKIFRQSLSNV 432 Query: 309 AHKAGADIN 317 + Sbjct: 433 YDYDDFIYH 441 >UniRef50_B9ZKT6 TIM-barrel protein, nifR3 family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZKT6_9GAMM Length = 330 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 67/295 (22%), Positives = 125/295 (42%), Gaps = 22/295 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPV 66 +APM +DR R R L + +EMVT+ + G L + +E P Sbjct: 10 DPPVFLAPMAGVSDRPLRLIARRLGASA-AVSEMVTSDTRLWGSDKSRHRLDHRQEPRPR 68 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +QL G++P LA+ A+ RG D I+LN+GCP+ +V + G+ L+G + V + + A Sbjct: 69 IVQLLGNEPEPLAEAARENVRRGADVIDLNLGCPAKKVCSKAAGSALLGEPERVRELLTA 128 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + + V +PVT+K R+G+D + I ++ M +H R + + Sbjct: 129 LVESVEVPVTLKMRLGLDRERVNAET---IAGIAQDCGIAMLTVHGRT--------RADA 177 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILA 244 DY + ++ R + + NG + + A+ L G+M+GR A P + Sbjct: 178 YRGTADYEAIARVVRAVS-IPVLANGDVVDIGSARRALAISGATGLMIGRGAQGRPWLPG 236 Query: 245 AVDREIFGSSDTDAD----PVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 + + G +A++ + + + + +H+ Q + Sbjct: 237 QIRASLAGEPVPADPAWDARLALIEEHLRALHAQYGEMQGVRIARKHLGWYLQHM 291 >UniRef50_UPI0001BC5FF0 nitrogen regulation protein NIFR3 n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC5FF0 Length = 322 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 142/330 (43%), Gaps = 30/330 (9%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD----YLAYSEEEHPVA 67 + +AP+ TD R L + LL+TEMV++ A+ L Sbjct: 3 KIFIAPIAGVTDYTYRGILEEF-QPDLLFTEMVSSDALAALNDKTISQILRLRSGN---G 58 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +QL G D + AK E G I++N GCP RV + G+ L+ + + + + + + Sbjct: 59 VQLFGKDTEKMIYSAKYIEKLGVKNIDINAGCPMKRVVHSGHGSALLKSPEKIKEILFTL 118 Query: 128 RDVV--SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 R+ + S +++K R+G D ++Y + ++ + C +H R + Sbjct: 119 REQLEESTKLSIKIRVGYDRPENYLQIAK----IAEEAGCSHITVHGRT--------RAQ 166 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL 243 D+ + ++K + + NG I + E AK ++ +DGVM+ R + NP ++ Sbjct: 167 LYTGLADWSLIKEIKEHVT-IPVIGNGDIFTAEAAKEKIEDSGVDGVMLARGIFGNPWLI 225 Query: 244 AAVDREI-FGSSDTDADPVAVVRAMYPYI---ERELSQGTYLGHITRHMLGLFQGIPGAR 299 + + +G T + +I E + Q ++ + +H+ +GIP + Sbjct: 226 RDIREMLQYGEVKTKVSTEDKIDMAIHHILKTEEDNPQREFVFDVRKHICWYLKGIPHSA 285 Query: 300 QWRRYLSENAHKAGADINVLEHALKLVADK 329 +++ ++++ A + +L+ + + + Sbjct: 286 EYKNRINQS-TDYKAVVQLLQELKEKIKGE 314 >UniRef50_D1VTQ2 Probable tRNA-dihydrouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTQ2_9FIRM Length = 310 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 61/323 (18%), Positives = 133/323 (41%), Gaps = 24/323 (7%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS---EEEHPVAL 68 +F +APM +TDR R + TEMV+ A+ L E + Sbjct: 3 KFFMAPMAGYTDRAFRQLIYENG-LDHAVTEMVSARALCFNDRKTLELLKKFPGEKNTGV 61 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ SD ++++ + L + I++N+GCP+ ++ G+ L+ N LV + VK Sbjct: 62 QIFASDVESISKASYLLNDFDFSYIDINMGCPAPKIVKNGCGSALIKNPNLVYELVKGAV 121 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 + +++KTR D+ S + + + +H R +E Sbjct: 122 KNSNKKISIKTRKSFDNTLSLDII-----RAAQDAGAFAVTVHPR--------SREEYYK 168 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILAAV 246 D+ + ++K+ F + + NG I ++E+A ++ +DG+ +GR A +NP I + + Sbjct: 169 NKSDWQYLIKIKK-FLTIPLIGNGDILTVEDALYKIKKYDVDGIAIGRGAIENPLIFSQI 227 Query: 247 DREIFGSSDTDAD---PVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 + + G + + + ++ Q + ++ + + + +++ R Sbjct: 228 KKALKGEKYEELNFNQRIDILLRHLYLEVNYKGQRQAILNMRKTYAYYLKNLKNSKEIRN 287 Query: 304 YLSENAHKAGADINVLEHALKLV 326 L+ + +LE + + Sbjct: 288 KLNVENDYTNV-VKILEEYREQM 309 >UniRef50_A7H1K2 tRNA-dihydrouridine synthase B n=14 Tax=Campylobacter RepID=A7H1K2_CAMJD Length = 308 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 61/323 (18%), Positives = 126/323 (39%), Gaps = 28/323 (8%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPV 66 +APM ++D R ++ + + +EM+++ A+++ L +E E+P Sbjct: 6 KKPLFLAPMAGFSDLPFRNVVKKFGAD-ITISEMISSNALVYESSKTLHMLERAELENPY 64 Query: 67 ALQLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +Q+ G D L + ++ + D I+ N GCP ++V G+ L+ N +L + V Sbjct: 65 IVQIAGGDKEVLKKAVQMLNKMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELFKNLVG 124 Query: 126 AMRDVVSIPVT-VKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +++ +T VK R+G E + + + + +H R ++ Sbjct: 125 VIKENNKKSLTSVKFRLGF-----NEKYPEKMAKICESLGVDFVSVHGRT--------RK 171 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQNPGI 242 DY + K + + NG I + + AK + DG+M+GR + NP I Sbjct: 172 QLYSGKADYESIASAKASV-KIPVIANGDI-NAQNAKEVYKITKCDGLMIGRASVGNPWI 229 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 + G S + ++ + + + + +H+ +G A +R Sbjct: 230 FYEIKS---GKSVDEKLKKEIILTHFDEMIKHYKD-QGVSIFRKHLHEYSKGHKDASAFR 285 Query: 303 RYLSENAHKAGADINVLEHALKL 325 ++ A +E L Sbjct: 286 DGVNR-IDNAEKMRKKIEEFFSL 307 >UniRef50_B7XK29 NIFR3-like protein n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XK29_ENTBH Length = 321 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 110/322 (34%), Positives = 180/322 (55%), Gaps = 14/322 (4%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS--EEE 63 D + ++APM+ T R ++L++ T+LYTEM+T II+ + L + + Sbjct: 4 DKLIRPKIALAPMMKVTTPCFRKLIQLIAPTTILYTEMITASTIINLNDEKLQITLGNPD 63 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 + +Q+GGS+P + K + G+ NLN GCPS RVQ GMFGA LM +LV + Sbjct: 64 NQTVVQIGGSNPKDIVNAIKRLKQCGWRLFNLNCGCPSTRVQKGMFGAILMKYKELVIEI 123 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + + I +++K R GID+ DSYEFL +FI ++S C +F IHARK WL G++PK Sbjct: 124 INTVYIETQIILSIKCRTGIDEFDSYEFLKEFIESISKNTPCNIFYIHARKCWLQGINPK 183 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIK--SLEEAKAHLQHMDGVMVGREAYQNPG 241 +NR IPPL+Y ++++K++FPHL + INGGI S + K + DG+M+GREA +NP Sbjct: 184 QNRNIPPLNYDYIFRIKKEFPHLFIGINGGITYNSYLKYKFQMDTCDGIMIGREAIKNPL 243 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 I A + + ++++ + +IE + I + L +G P ++ + Sbjct: 244 IFAEIINM-------PINIQYIIQSYFKFIEM---SNFTIYKILYPLCNLRRGKPNSKHF 293 Query: 302 RRYLSENAHKAGADINVLEHAL 323 ++ +++ H +N L + L Sbjct: 294 KQMINQLLHNKLITVNELSNVL 315 >UniRef50_Q010A0 tRNA-dihydrouridine synthase (ISS) n=2 Tax=Mamiellales RepID=Q010A0_OSTTA Length = 639 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 117/299 (39%), Gaps = 20/299 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 ++ + + G+ VAP+ + R L + + +EM ++ G Sbjct: 261 KRVSLEFKGKIYVAPLTTVGNLPFRRICTDLGAD-ITVSEMAMASNLLKGDRKEWALVRR 319 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +Q+ G P + +CA+L + D I++N+GCP D V G LM + Sbjct: 320 HPIEKCFGIQICGGYPDLMTRCAELLDNEVHCDFIDVNMGCPIDGVCAKGAGGSLMRDTD 379 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + V++M V S PVT+K R+G D S D I+ G +H R Sbjct: 380 RLKRVVRSMTSVSSTPVTIKLRMGYFDDPSRYVAHDIISKAKSWGAYAA-TLHGRT---- 434 Query: 179 GLSPKENREIPPLDYPRVYQLKR--DFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGR 234 +E R D+ +++ +L + NG + + ++ + + + M+GR Sbjct: 435 ----REQRYSRLADWSYIHRCADASALNNLPLIGNGDVYTYQDWNEQIANEKISTCMIGR 490 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 A P ++ + + + + + + + Y +E S + R++L Sbjct: 491 GAIIKPWLMTEIKEQRHW-DISANERLDLFKDFVHYGLEHWGSDSVGVEKTRRYLLEWM 548 >UniRef50_C4QMR1 tRNA-dihydrouridine synthase, putative n=1 Tax=Schistosoma mansoni RepID=C4QMR1_SCHMA Length = 441 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 127/326 (38%), Gaps = 38/326 (11%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPV 66 S ++ +APM+D ++ R R L +T M+ + A + + L ++ E+ P+ Sbjct: 9 SPKYVLAPMVDGSELAWRMLGRKYG-VQLTFTPMINSTAFLINMKYRRSCLQFASEDRPL 67 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q + P +CAKL + D ++LN+GCP + G +GA L + + + Sbjct: 68 IVQFCANSPDTFVRCAKLVQPF-CDAVDLNLGCPQGIAKRGHYGAFLQDEWNSLKEIISR 126 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 +++PVT K RI D + + ++ + M +H R + G Sbjct: 127 ASLELNVPVTCKIRIFSDVERTVQYA-----KLLEAAGASMLTVHGRTREMKGQK----- 176 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILA 244 D+ ++ +K + + NG I+ L + L D VM NP + Sbjct: 177 -TGLADWNQIRAVKEAV-KIPVIANGNIQYLSDVHQCLDSTKADAVMSAEGHLHNPALFL 234 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG-IPGARQWRR 303 + I+ + +E+ T + I H+ L + ++R Sbjct: 235 GIQPCIY----------DMCFEYLDLVEKY---PTSMQIIRGHIFKLCHHALDEHSEYRS 281 Query: 304 YLSENAHKAGADINVLEHALKLVADK 329 + + G ++ L+ +A++ Sbjct: 282 LIGTSQSTKG-----IKEILQKMANQ 302 >UniRef50_C8WHM7 TIM-barrel protein, nifR3 family n=2 Tax=Coriobacteriaceae RepID=C8WHM7_EGGLE Length = 330 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 135/327 (41%), Gaps = 28/327 (8%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEHPV 66 S R +APM +D R R + L YTEMV+ + + L + E V Sbjct: 10 SRRLLLAPMAGVSDEAFRTLCREQGAD-LTYTEMVSAKGLSYANEKTRHLLRLAPGEDQV 68 Query: 67 ALQLGGSDPAALAQCAKLAEAR---GYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 A+QL G +P +A A E +++N+GCP+ ++ + G+ LM + L A Sbjct: 69 AVQLFGHEPDTMAAQAAWIEREMGQSLAYLDINMGCPARKIVSKGDGSALMKDPALAASI 128 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 V+A+R VS PVTVK R G + D +F + G C +H R A Sbjct: 129 VRAVRAAVSRPVTVKFRRGWAEGDETA--PEFARRMEDAGACA-IAVHGRYA-------- 177 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQNPG 241 E ++ + ++K + + NG ++S +A A D VM+ R A NP Sbjct: 178 EQLYRGRAEWGAIARVKEAVS-VPVVGNGDVRSGADAVAITERTGCDAVMIARAAEGNPW 236 Query: 242 ILAAVDREIFGSSDTD----ADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 + A + G + D + +A+ R + +G + + +H + G+PG Sbjct: 237 LFAQAKAALAGEPEPDGPTVEERIALARRHARLLSAR--EGRNIVRMRKHAMWYLAGLPG 294 Query: 298 ARQWRRYLSENAHKAGADINVLEHALK 324 A R ++ D V + L Sbjct: 295 AAAARGRINGCVSVEDFD-EVFDELLA 320 >UniRef50_A8NZY7 tRNA-dihydrouridine synthase 3 n=2 Tax=Agaricales RepID=DUS3_COPC7 Length = 676 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 61/306 (19%), Positives = 114/306 (37%), Gaps = 31/306 (10%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 EK + W G+ +AP+ + R L + + EM + + G + Sbjct: 303 EKRRLDWKGKTYLAPLTTVGNLPFRRMCVKLGAD-ITCGEMGLATSFLAGSKEEWSLVRR 361 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR---GYDEINLNVGCPSDRVQNGMFGACLMGN 116 E +Q+ G+ P L A++ G D ++LN GCP D V G+ L+ N Sbjct: 362 HPSEKIFGIQVAGNKPHTLVPTAEVIAKEFPTGVDFVDLNCGCPIDLVFKAGSGSALLDN 421 Query: 117 AQLVADCVKAMRDVVS-IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 A + ++ M + IP+TVK R G+ + + + +S + +H R Sbjct: 422 AGKLGKIIQGMNRALGEIPLTVKIRTGVKEGRNNA--HKLMPRISAEWSASAITLHGRT- 478 Query: 176 WLSGLSPKENREIPPLDYPRVYQLK---------RDFPHLTMSINGGIKSLEEAKAHLQ- 225 ++ R D+ + + D P + + G S ++ + Sbjct: 479 -------RQQRYTKLADWDYIKECVAAVRAREADEDLPPVPIFGGGDCFSSQDYWEKINN 531 Query: 226 -HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGH 283 +DGVM+GR A P I + E + + + ++R Y + S + Sbjct: 532 YGVDGVMIGRGALIKPWIFTEIK-ERREWDISATERLQLIRDYVEYGLNHFGSDTAGVNT 590 Query: 284 ITRHML 289 R++ Sbjct: 591 TRRYLC 596 >UniRef50_Q2IG49 Dihydrouridine synthase TIM-barrel protein nifR3 n=4 Tax=Anaeromyxobacter RepID=Q2IG49_ANADE Length = 352 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 78/327 (23%), Positives = 133/327 (40%), Gaps = 33/327 (10%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEH 64 + GR+ +AP+ +DR R R + + YTEMV+ ++HG YL +E Sbjct: 7 QFPGRYFLAPLAGVSDRPFRAICRRMGA-SFAYTEMVSAHGLMHGALQTSSYLDREPDED 65 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P A+Q+ S+P LA+ A +A G I++N+ CP +V GA + + + V + V Sbjct: 66 PFAVQIFASEPDVLARGAVVAVQAGAGMIDVNMACPVKKVCGSGAGAAMGRDPRKVEEAV 125 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +A+R V +PVTVK R G D+ E C + + G +H R + Sbjct: 126 RAIRAAVPVPVTVKIRAGWDEG---EVNCVDVARAAEAGGAAAVALHGRT--------RS 174 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGI 242 + V +K+ + + +G + + +A + D V+V R A NP I Sbjct: 175 QLYSGKARWELVRAVKQAVA-IPVLGSGDVWTAGDAVRMREETGCDAVLVARGACGNPWI 233 Query: 243 LAAVDR--------EIFGSSDTDADPVAVVRAMYPYIER-------ELSQGTYLGHITRH 287 + G + + VR + R E S+ + + +H Sbjct: 234 FRELKAIEAGRPPPPPPGRDEWVGTVLEHVRLQVEHRARMAPGEPAEASERHAIRELRKH 293 Query: 288 MLGLFQGIPGARQWRRYLSENAHKAGA 314 +L +G G +RR + A Sbjct: 294 LLWYTRGRRGGVHFRRDAAALVTAADV 320 >UniRef50_C0W327 Dihydrouridine synthase n=2 Tax=Actinomyces RepID=C0W327_9ACTO Length = 438 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 81/364 (22%), Positives = 127/364 (34%), Gaps = 59/364 (16%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLS-------------------------RNTLLYTEMVTT 46 +APM T+ R R L TEMVTT Sbjct: 37 PVELAPMAGVTNASFRRLCREQGESALPAHARPAAAGPLPTDDGGLLAPAGLYVTEMVTT 96 Query: 47 GAIIHGKGDYL---AYSEEEHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSD 102 A++ L E ++QL G DP + A++ D I+LN GCP Sbjct: 97 RALVERNDKTLAMVRTDPTERVRSIQLYGVDPVIAGKAARILVEEDLADHIDLNFGCPVP 156 Query: 103 RVQNGMFGACLMGNAQLVADCVKAM-----------RDVVSIPVTVKTRIGIDDQDSYEF 151 +V GA L L+ ++ + R +PVTVK RIG+D++ Sbjct: 157 KVTRKGGGAALPWKKDLLHAILREVVRGAEEGVRLGRREREVPVTVKMRIGVDEEHETYL 216 Query: 152 LCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSIN 211 + +H R A D+ + +LK + + N Sbjct: 217 D---AARAAQDAGVAALALHGRTA--------RQHYAGKADWSAIARLKEAC-RIPVLGN 264 Query: 212 GGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAVDREIFGSSD-TDADPVAV---VR 265 G + A + DGV+VGR P + A + + GS + T D AV +R Sbjct: 265 GDTWTGSHALEMMRQTGCDGVVVGRGCQGRPWLFADIVHALSGSVERTHPDLDAVIATIR 324 Query: 266 AMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKL 325 A + EL + + + +H+ +G P Q R L + + A D LE Sbjct: 325 AHARLLAAELGEDRGVRDLRKHIGWYLKGYPVGGQARGDLMKVSSLAELD-AGLEAMRAR 383 Query: 326 VADK 329 + ++ Sbjct: 384 LPEQ 387 >UniRef50_C0QXB6 Dihydrouridine synthase-like (DUS-like) FMN-binding domain protein n=2 Tax=Brachyspira RepID=C0QXB6_BRAHW Length = 325 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 69/329 (20%), Positives = 138/329 (41%), Gaps = 27/329 (8%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEE 63 V+ RF +APM +TD R R LL TE+V+ A+ Y+ + E+E Sbjct: 10 VNIPSRFFLAPMAGYTDYVFRRLSRKFGA-GLLVTELVSAAALARQVKKTYRYMEHKEDE 68 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 +P++LQL G++ + ++ + G+ I++N+GCP+ +V GA L+ + + Sbjct: 69 YPISLQLFGANEDDYKRAIEITDLSGFSFIDINMGCPTKKVVKNNGGAGLLEDTDKMISV 128 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + A++ V +PV+VK R+G+ + E + +H R A Sbjct: 129 LNAVKSVSPLPVSVKIRLGLKRGEGGEIERALAMK---ENGACFLTLHGRYA-------- 177 Query: 184 ENREIPPLDYPRVYQLKRDFP-HLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQNP 240 + D+ + ++K + NG IKS E+A + +DG+MVGR A NP Sbjct: 178 SDMYRGTADWEAIAKIKEALGEDYILIGNGDIKSKEDAVKAFDISKVDGIMVGRGAIGNP 237 Query: 241 GILAAVDREIFGSSDTDADPVA------VVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 I ++ + + + +++ + + + + + ++ G Sbjct: 238 WIFTELNTIFEDNDEYNNKIDEKDNLKNIIKEHINGCCELYGEVSGIHFMRKFIMKYLTG 297 Query: 295 IPGARQWRRYLSENAHKAGADINVLEHAL 323 + L + +K +L++ + Sbjct: 298 YRMENKI--ELMKCENKEE-LFKILDNII 323 >UniRef50_C6JNK3 Dihydrouridine-tRNA ligase n=4 Tax=Fusobacterium RepID=C6JNK3_FUSVA Length = 320 Score = 253 bits (646), Expect = 8e-66, Method: Composition-based stats. Identities = 66/327 (20%), Positives = 134/327 (40%), Gaps = 30/327 (9%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD----YLAYSEEEHPVA 67 + AP+ TD R L+ + LL+TEMV+ A+ L E + + Sbjct: 3 KIYTAPIAGVTDYTYRGILKEF-KPDLLFTEMVSINALEVACEKTLKVILRLREGD---S 58 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +QL G D + + AK E+ G I++N GCP ++ N +GA LM +LV + + Sbjct: 59 VQLFGKDIKKMVESAKFVESLGVKHIDINSGCPMKKIVNNGYGAALMEQPELVKAMLSEV 118 Query: 128 RDVVSIP--VTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 R ++ +++K R+G + + + ++ + C+ IH R +E Sbjct: 119 RSALNDKTDLSIKIRVGYKESKNPVEIAK----IAQETGCKHITIHGRT--------REQ 166 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQNPGIL 243 D+ + ++K + + NG I + E+AK +DG+M+ R + NP ++ Sbjct: 167 MYTGKADWSIIKEVKESV-DIPVIGNGDIFTAEDAKERVDYSGVDGIMLARGIFGNPWLI 225 Query: 244 AAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGAR 299 + TD + + + E E + ++ + +H+ +GI Sbjct: 226 RDIREYFEYGKILHPVTDIEKIDMAIKHTKRTEVEHPERPFIFELRKHLCWYLKGIRNTA 285 Query: 300 QWRRYLSENAHKAGADINVLEHALKLV 326 + + ++ + + +L + Sbjct: 286 EIKDKIN-HTDNYNEIVELLNRVKDNL 311 >UniRef50_A6BZR9 Predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BZR9_9PLAN Length = 355 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 66/329 (20%), Positives = 119/329 (36%), Gaps = 26/329 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEHP 65 + R+ +AP+ +T R +R L L T++V ++ G L S + P Sbjct: 21 LASRYFLAPLAGYTQHAFRVAIRELGGVGLCTTDLVLASHLLSGSRKSKALLTTSPADRP 80 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + +Q+ G A L A+ E GY ++LN+GCP ++ GA +M V Sbjct: 81 LTIQIFGGITAELVAAARWLEQHGYAAVDLNMGCPMAKINGNGGGARIMCAPDAACQLVA 140 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 + D VSIPVTVK R+G D + + +H R + Sbjct: 141 EVVDAVSIPVTVKMRLGWDRDS---ITAPLLAREFEQAGVAAITVHGRT--------RNQ 189 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL 243 +D + Q + + NG + ++E+A + + V +GR A +P I Sbjct: 190 GFGGTVDLQGIRQTVEAVQQIPVIGNGDVCTVEDAFRMREQTGCEAVSIGRGAMLDPWIF 249 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQG--TYLGHITRHMLGLFQGIPGARQW 301 + + + T+ ++ + + Q I + GA Sbjct: 250 RKISQAVRDEPVTEPTRDEQIQFLERHFSLMFEQHELYGCRLIRKFAAWY-----GA--- 301 Query: 302 RRYLSENAHKAGADINVLEHALKLVADKR 330 R + E+ + E ++ R Sbjct: 302 RLGIPEDLEDRLRRLESDEEFKDIIEQIR 330 >UniRef50_C8X244 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X244_DESRD Length = 328 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 76/320 (23%), Positives = 133/320 (41%), Gaps = 22/320 (6%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEEHPVALQL 70 +AP+ +TD R R + +TEM++ +I+ G D LA + + P+ +QL Sbjct: 20 WLAPLAGFTDLPFRLLCRENGAR-VAHTEMISVKGLIYNSQGTWDLLATAPADTPLVVQL 78 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G+DP AQ + RG+ I+LN GCP +V GA LM + Q + ++ + Sbjct: 79 FGADPDCFAQPVRWLTERGFHWIDLNAGCPVRKVIKTGAGAALMEDPQRLVRIMQTIGRA 138 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 + VK R+ D S + L +T++ + +H R A Sbjct: 139 APVQAGVKLRLPADG--STDGLLRLRDTLA-RAGVSWITLHPRTA--------RQGYGGL 187 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL-AAVD 247 + + ++ P + + +G + + + A+ + +DG+M R A NP I A + Sbjct: 188 AQWSALSRMAESSP-VPIVASGDLWNAQAARRCFEQTGVDGIMFARGALHNPRIFKADLA 246 Query: 248 REIFGSSDTD-ADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL- 305 TD A A+VR R + L + + +G PGA+Q R+ + Sbjct: 247 TGAEEDPCTDTASIAALVRRHGQLCRRYDPSRSMLLKMRSFIPRYVKGFPGAKQARKGII 306 Query: 306 -SENAHKAGADINVLEHALK 324 ++ + LE AL Sbjct: 307 ACQDWEAFEQYADQLEEALA 326 >UniRef50_Q7PVV7 AGAP009171-PA (Fragment) n=3 Tax=Endopterygota RepID=Q7PVV7_ANOGA Length = 599 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 60/300 (20%), Positives = 107/300 (35%), Gaps = 24/300 (8%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 E+ + + + ++P+ + R + + + EM II+G Sbjct: 242 ERKRIVFRDKLYLSPLTTVGNLPFRRICKEYGVD-ITCGEMACAIPIINGAIQEWALTKR 300 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +QL G +P + A++ D I+LN GCP D + N G+ L+ Sbjct: 301 HSSEDLFGVQLCGHNPKLVTYAAQIIAEKADVDFIDLNTGCPIDLIFNQGGGSALLRRQN 360 Query: 119 LVADCVKAMRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 ++ V++ ++ TVKTRIGI + + + + IH R Sbjct: 361 VLKVMVQSCSRLLADYGKEFTVKTRIGIYNNK---LIAHEMVPKFEDWGASLITIHGRT- 416 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM---DGVMV 232 KE R D+ + Q + + NG I E+ + GVMV Sbjct: 417 -------KEQRYTKRADWEYLQQCATQAQSVPVFGNGDIFGYEDYEHIRTKCPNIAGVMV 469 Query: 233 GREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGL 291 GR A P + + E + + +++ Y +E S + R +L Sbjct: 470 GRGALIKPWVFQEIK-ERKTLDPSSGERFEMLKRYVNYGLEHWGSDTKGVETTRRFLLEW 528 >UniRef50_B9HRE5 Predicted protein (Fragment) n=11 Tax=Eukaryota RepID=B9HRE5_POPTR Length = 362 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 59/302 (19%), Positives = 110/302 (36%), Gaps = 26/302 (8%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLA 58 EK + + G+ +AP+ + R + L + + EM ++ G+ L Sbjct: 6 REKKLIDFRGKLYLAPLTTVGNLPFRRVCKALGAD-VTCGEMAMCTNLLQGQASEWALLR 64 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNA 117 E +Q+ G+ P + + +L + D I++N+GCP D V N G+ L+ Sbjct: 65 RHSSEDLFGVQICGAYPDTVTRTVELIDQECTVDFIDINMGCPIDIVVNKGAGSSLLTKP 124 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKG--ECEMFIIHARKA 175 + ++A V P+TVK R G + S + + G IH R Sbjct: 125 MRMKSIIEATSGTVEKPITVKVRTGYFEGKS-----RIDSLIVDIGKWGASAVTIHGR-- 177 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPH-LTMSINGGIKSLEEAKAH---LQHMDGVM 231 ++ R D+ +YQ R P L + NG + S + H + M Sbjct: 178 ------SRQQRYSKLADWDYIYQCARKAPDSLQVLGNGDVFSFVDWNNHKSDCPELSSCM 231 Query: 232 VGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYP-YIERELSQGTYLGHITRHMLG 290 + R A P I + + + + + +++ +E S + +L Sbjct: 232 IARGALIKPWIFTEIKEQRHW-DISSGERLNILKDYVRSGLEHWGSDTKGVETTRHFLLE 290 Query: 291 LF 292 Sbjct: 291 WL 292 >UniRef50_A7AWB5 Dihydrouridine synthase (Dus) domain containing protein n=1 Tax=Babesia bovis RepID=A7AWB5_BABBO Length = 362 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 139/323 (43%), Positives = 197/323 (60%), Gaps = 12/323 (3%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD----YLAY 59 H +APMLD T R F+RL+++ L+TEM+ G++I+G D L Sbjct: 9 SGRSHDRPLVQIAPMLDITYYEFRQFMRLITKRAQLWTEMMADGSLIYGDSDKVGSMLHC 68 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGM-FGACLMGNAQ 118 EHP+ LQLGG++ +L++ +A GY E NLNVGCPS RV FGA LM +A Sbjct: 69 DANEHPIVLQLGGNNLDSLSKAGNIALGYGYTEFNLNVGCPSTRVSGKGCFGAALMNDAP 128 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 LV VK +R + PVTVK R+G+D DSYEF+ DFI+TV+ +G C FI+HARKAWL+ Sbjct: 129 LVGRIVKHLRSELGTPVTVKHRLGVDHNDSYEFVRDFISTVADQG-CTDFIVHARKAWLN 187 Query: 179 GLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL-QHMDGVMVGREAY 237 G++P++NR IPPLD+ RVY+L ++FP+L +SINGGIKSLEE K L + + GVMVGR AY Sbjct: 188 GINPRKNRSIPPLDHERVYRLCQEFPNLNISINGGIKSLEEIKYALSRGVYGVMVGRMAY 247 Query: 238 QNPGILAAVDREIFGS---SDTDADPVAVVRAMYPYIERELSQGTYLG--HITRHMLGLF 292 +NP L VD +I+G T ++ +I+ + S+ + + + + +LG F Sbjct: 248 ENPCGLVRVDTDIYGEATNPATCKTRRILLETYANFIDSQASRTSDMNVCMLVKPILGTF 307 Query: 293 QGIPGARQWRRYLSENAHKAGAD 315 G G + +R+ LS+ D Sbjct: 308 HGEVGTKIFRQALSDMNVYETLD 330 >UniRef50_P53759 tRNA-dihydrouridine synthase 1 n=19 Tax=Ascomycota RepID=DUS1_YEAST Length = 423 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 69/328 (21%), Positives = 120/328 (36%), Gaps = 28/328 (8%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAII------HGKGDYLAYSEEEHPVA 67 VAPM+D ++ R R TL YT M+ L S + P+ Sbjct: 32 IVAPMVDQSELAWRILSRRYGA-TLAYTPMLHAKLFATSKKYREDNWSSLDGSSVDRPLV 90 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +Q +DP L AKL E + D ++LN+GCP + G +G+ LM L+ + + + Sbjct: 91 VQFCANDPEYLLAAAKLVEDK-CDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLINTL 149 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + +PVT K RI D + S + + + +H R G Sbjct: 150 HKNLKVPVTAKIRIFDDCEKSLNYA-----KMVLDAGAQFLTVHGRVREQKGQK------ 198 Query: 188 IPPLDYPRVYQLKRDFPHLTM-SINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILA 244 ++ + L+ + P T+ NG I E+ ++ D VM NPG+ Sbjct: 199 TGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFN 258 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI-PGARQWRR 303 + D ++R + ++ + H + + P R Sbjct: 259 VGQTKNKEKIFPRVDK--IIREYFQIVKECQESKASKTAMKSHFFKILRPFLPHHTDIRS 316 Query: 304 YLSENAHKA---GADINVLEHALKLVAD 328 L+ KA + V++ K+V + Sbjct: 317 TLATMNAKATWEEWEEQVVKPVEKVVQE 344 >UniRef50_UPI00006A5AE6 PREDICTED: similar to PP3111 protein n=1 Tax=Ciona intestinalis RepID=UPI00006A5AE6 Length = 474 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 68/326 (20%), Positives = 130/326 (39%), Gaps = 38/326 (11%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHP 65 VAPM+D ++ R R L YT M+ + + D LA E+ P Sbjct: 17 GRPTKLVAPMVDQSELAWRMLSRKYGAE-LCYTPMLHASVFLRDPQYRIDGLASCPEDRP 75 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + +Q +DP L + A LA+ D +++N+GCP + G +GA L N +LV +K Sbjct: 76 LIVQFCANDPDILTKSALLAQDH-CDAVDINLGCPQTIAKRGNYGAFLGENWELVTKLIK 134 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A + +S+PVT K RI D + + ++ + + C++ +H R + G Sbjct: 135 ACHEKLSVPVTCKIRIFTDVEKTVQYA-----KMIERAGCQLLTVHGRTKEMKG------ 183 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGIL 243 + + +K + + NG I+ + + +DGVM+ +P + Sbjct: 184 PMTGLASWEHIKAVKDAV-KIPVFANGNIQYKADVDRCINQTGVDGVMIAEGNLHDPCLF 242 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF-QGIPGARQWR 302 I+ Y++ + + H+ + G+ + R Sbjct: 243 VGKKTIIW-------------EIALEYLQCAVKYPCPASYARGHVFKICHHGLQRHTRAR 289 Query: 303 RYLSENAHKAGADINVLEHALKLVAD 328 L+ + DI ++ A++++ D Sbjct: 290 DLLASSK-----DIQDMKTAVEVLRD 310 >UniRef50_UPI0000D52F94 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F94 Length = 338 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 63/335 (18%), Positives = 117/335 (34%), Gaps = 34/335 (10%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEEEHPVAL 68 +APM TD R + + TE + + E P Sbjct: 13 PIFLAPMAGVTDLAYRLLAKECGAD-FTVTEFTAASGLTRKNTNSWLKVETDPREKPFIP 71 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q+ G D + +A+ + E R D I++N GCP+ +V GA L+ + V V+ Sbjct: 72 QIFGGDISEMAKTVGMLEDRS-DVIDINFGCPAPKVCRNDAGAALLRDPDKVVSMVRRCI 130 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 + ++P+TVK R+G + + ++ +G +H R R Sbjct: 131 ESTNVPITVKMRLGTGSGPNTA--LEISKRLADEG-VMRICVHGRT--------LRQRYS 179 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAV 246 D+ ++ ++ + + NG + + A+ L+ + G+M+GR A P I + Sbjct: 180 GIADWDQIKEISNSV-DIPVIANGDVVDTKSAELCLEATNAGGLMIGRGAIGRPTIFHEI 238 Query: 247 DREIFGSSDTDA-----DPVAVV---RAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 + S T A + ++ RH + +G+ GA Sbjct: 239 KHGMGWSHKTAPWGKGGPSRARSWCWDRYLELSQEVYGDS-GSKNLKRHAISFTKGLEGA 297 Query: 299 RQWRRYLS------ENAHKAGADINVLEHALKLVA 327 R L + + ++ LE V Sbjct: 298 SAMRVRLHSIQDKTQLGTEVSNYLHDLEETENQVE 332 >UniRef50_D2R6Z1 TIM-barrel protein, nifR3 family n=3 Tax=Planctomycetaceae RepID=D2R6Z1_9PLAN Length = 345 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 66/336 (19%), Positives = 109/336 (32%), Gaps = 28/336 (8%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH-------GKGDY 56 V APM +T+ R +R L TEMV Sbjct: 6 IGQVKVDPPILQAPMAGYTNYAYRQMVREFGGAGLQATEMVNASGFAWLHEHEAEHPDRL 65 Query: 57 LAYSEEEHPVALQLGGSDPAALAQCAKLAE-ARGYDEINLNVGCPSDRVQNG-MFGACLM 114 EE P+A+Q+ +DPA LA+ + +++N GCP V G+ L+ Sbjct: 66 WGVKEEARPLAVQMWDNDPATLAKVGERLANELHVSVVDINFGCPVKDVTEKAHSGSYLL 125 Query: 115 GNAQLVADCVKAMRDVV-SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR 173 +A V+ + PVT K R+G I V +H R Sbjct: 126 KFPDRIAQIVERVVKACAPTPVTAKIRLGCSRDAINAIE---IAKVVESAGAAALTVHGR 182 Query: 174 KAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVM 231 A + D+ R+ ++K + + NG + S E+ + +DGVM Sbjct: 183 TA--------ADFFRGTADWNRIAEIKPHLKKIPLIGNGDLDSPEKVIEAFRRYGVDGVM 234 Query: 232 VGREAYQNPGILAAVDREIFGSSDTDADPVA----VVRAMYPYIERELSQGTYLGHITRH 287 + R + P + + G + Y + + + Sbjct: 235 IARASMGRPWLFRQAAAALRGEPVPPDPTAEEQRLTMLRHYELTCARFGEQKGTLLMRKF 294 Query: 288 MLGLFQGIPGARQWRRYLSENAHKAGADINVLEHAL 323 G PGAR +R ++ + NV+E Sbjct: 295 ACNYATGRPGARTFRAMVANVFTREDF-FNVVERYF 329 >UniRef50_D0LJX3 TIM-barrel protein, nifR3 family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJX3_HALO1 Length = 348 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 71/311 (22%), Positives = 123/311 (39%), Gaps = 24/311 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEEE 63 + +APM TD R L TE + A+ G D L S + Sbjct: 12 LTIDTPVLLAPMAAVTDLPFRTICERFG-VGLTITEFLKATALCDGDAEVVDKLTASLDG 70 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 +Q+ G + L Q A+LA G I++N+GCP+ RV G GA LM +L A+ Sbjct: 71 VRFGVQIYGREVEPLVQAAQLALDIGASLIDINMGCPAKRVVAGECGAALMQWPELSAEL 130 Query: 124 VKAMRDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 V+A+ V +PVTVK R G + + +F + G +M +H R Sbjct: 131 VRAVVASVPDSVPVTVKHRAGWNPLNRNA--PEFACAMVEAG-AQMVTVHGRT------- 180 Query: 182 PKENREIPPLDYPRVYQLKRDFP-HLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQ 238 + +D + +++ P + + NG + +++ + D VM+GR A Sbjct: 181 -RTQGFAGSVDLEVIRRVREAVPARVPVVGNGDVVCVDDYLRMREHTGCDAVMIGRGALG 239 Query: 239 NPGILAAVDREIFGSSDT-DADPVAVVRAMYPY---IERELSQGTYLGHITRHMLGLFQG 294 NP + ++ G D D R + + + + + +G Sbjct: 240 NPWLFRSLHALAHGLPDPGRPDMAERYRVFCEHVALLYALKGGPKLIHEVRKACAWYAKG 299 Query: 295 IPGARQWRRYL 305 + GA +R+++ Sbjct: 300 LDGADGFRQHV 310 >UniRef50_A9GW95 Dihydrouridine synthase TIM-barrel protein nifR3 n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GW95_SORC5 Length = 328 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 82/314 (26%), Positives = 133/314 (42%), Gaps = 22/314 (7%) Query: 2 PEK-TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYL 57 PE + +APM D TD R R L L TE V ++ G L Sbjct: 5 PESFRRLFARRPVVLAPMEDVTDAVFRRIGRELGAE-LCVTEFVNVEGLLRGCKTARRKL 63 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 A ++ + P A+Q+ G++P LA+ A++AE G +++N GC ++ GA + + Sbjct: 64 ALADGDQPTAIQIYGANPERLAEAARVAEEAGPAFLDINCGCWVPKIAGRGAGAGWLRDP 123 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 + + + + V++PVTVKTRIG +S+ + D + G IH R A + Sbjct: 124 EAMVAMARLVTRSVALPVTVKTRIGW-GPESHMPIVDLARRLEDAG-VAALTIHCRTAQM 181 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGRE 235 D+ + R+ + + +NG IK+ ++A L GVMVGR Sbjct: 182 G--------HSGAADWGWAAR-AREVVSIPVVVNGDIKTADDAARALRETGCAGVMVGRA 232 Query: 236 AYQNPGILAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGL 291 A +P I + T + +A+ RA + + RH+ G Sbjct: 233 AIDHPWIFREARALLDDGVHLPPPTAEERLALCRAHLIANTEARGEPHGVRVTRRHLTGY 292 Query: 292 FQGIPGARQWRRYL 305 +G+PGA RR L Sbjct: 293 LRGLPGASALRREL 306 >UniRef50_A0Z0J5 TRNA-dihydrouridine synthase B n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=A0Z0J5_9GAMM Length = 352 Score = 249 bits (637), Expect = 9e-65, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 133/333 (39%), Gaps = 28/333 (8%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTG-AIIHGKGDYLA--Y 59 + + ++APM TD R L + EM+T+ ++ + L + Sbjct: 16 KIGGFKLANPVALAPMAGVTDLPMRELCVELGA-GMAVAEMLTSDPKLLASRKSSLRRRH 74 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 S + ++Q+ GS+P LA A+L G D I++N+GCP+ +V G+ L+ + Sbjct: 75 SAKGGLRSVQIVGSEPQQLANAARLNADDGADVIDINMGCPAKKVCKKAAGSALLADEDR 134 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 VA+ +KA+ V +PVT+K R G+ Q I ++ ++ +H R Sbjct: 135 VAEILKAVVSAVDVPVTLKIRTGVSPQQRNGVA---IAKIAEDAGIQLLTVHGRT----- 186 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAY 237 + +R +Y + ++ + + NG I + +A A L G+M+GR A Sbjct: 187 ---RADRFKGEAEYHTIERIVDAVS-IPVLANGDITTPAQALAVLQKTGAAGIMIGRAAL 242 Query: 238 QNPGILAAVDREIFGSSDTDADPVAV---VRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 P + A+ + + G +R + + +H+ Sbjct: 243 GRPWLPGAIAQSLAGLRTPLPSLAERFLQMRCHLTALHDFHGDFMGVRIARKHVGWFIDA 302 Query: 295 IPG-----ARQWRRYLS--ENAHKAGADINVLE 320 I +W+R+ + ++A + LE Sbjct: 303 IENDVASSFTEWKRHFNALQDADAQQTLLQTLE 335 >UniRef50_C1E1T8 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E1T8_9CHLO Length = 662 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 118/301 (39%), Gaps = 25/301 (8%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAY 59 EK + + G+ +AP+ + R + + + EM ++ G+ L Sbjct: 297 EKKTIDFRGKLYLAPLTTTGNLPFRRICKRYGVD-ITCGEMAMVTNLLQGQPAEWALLRR 355 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-----GYDEINLNVGCPSDRVQNGMFGACLM 114 E Q+ G ++++C +L E G D I++N+GCP D V N G+ L+ Sbjct: 356 HPSEDIFGAQVCGGYSDSMSRCMQLLEDEVVSKGGLDFIDINMGCPIDLVCNKGAGSMLL 415 Query: 115 GNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK 174 + V+A ++S P+T+KTR+G D + I + G +H R Sbjct: 416 EKPARMEQLVRASAPLLSCPLTLKTRMGYFDNKRVA--HEIIPKMVDWG-LAGMTLHGR- 471 Query: 175 AWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMV 232 ++ R D+ + Q R P + + NG + S + +++ + M+ Sbjct: 472 -------SRQQRYSRLADWDYINQCARASP-IQLIGNGDVFSYHDYVKNVEGQGVATCMI 523 Query: 233 GREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGL 291 R A P I + E + + + +++ + +E + + + R +L Sbjct: 524 ARGALIKPWIFTEIK-ERRDWDISATERLDMLKDYAAFGLEHWGADARGVANTRRFLLEW 582 Query: 292 F 292 Sbjct: 583 L 583 >UniRef50_A6DPY9 Putative uncharacterized protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPY9_9BACT Length = 330 Score = 249 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 62/329 (18%), Positives = 125/329 (37%), Gaps = 24/329 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS---EEEHP 65 + + S+APM T R+ + LL TE + + L + P Sbjct: 5 FPFKLSLAPMEGVTHPLMRHQIAQHGGLDLLCTEFIRISS-HKPSMRSLKKQIVKSGDIP 63 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +++Q+ G++ +A+ AKL G D +++N+GCP+ R G G+ ++ + +L + Sbjct: 64 LSVQIMGNNAELMAESAKLVVDCGADAVDVNMGCPTKRAVKGGVGSAMLKDPKLCYQVLA 123 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 +MR+ V ++ K R G D+++ + I + +H R+ + + Sbjct: 124 SMREQVPCALSAKIRAGFDNKEGVFEILQAIV----DSGADYLAVHPRR--------RVD 171 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGIL 243 D+ + LK P + + NG +++ +A DGVM+GR A NP I Sbjct: 172 HYEGHSDWRIISALKEKSP-IPVIGNGDVRTAADAVRMFKETQCDGVMIGRGALSNPWIF 230 Query: 244 AAVDREIFGSSDTDADPVAVVRAMY---PYIERELSQGTY-LGHITRHMLGLFQGIPGAR 299 + + + + + L ++ +P Sbjct: 231 LQTSQVLSDQEVFIPNWEDIYHFYHGIAQAFSDFCDNEQGTLNKTKEMLMYFSVNLPEPA 290 Query: 300 QWRRYLSENAHKAGADINVLEHALKLVAD 328 +R+ + + +N L LK + Sbjct: 291 PFRKAIGRS-QSIDEMMNKLHSFLKEKRE 318 >UniRef50_A0EG06 Chromosome undetermined scaffold_94, whole genome shotgun sequence n=4 Tax=Intramacronucleata RepID=A0EG06_PARTE Length = 360 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 127/318 (39%), Gaps = 33/318 (10%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEEEHP 65 S +F APM+D ++ R R TL YT M+ + + K ++ E+ P Sbjct: 16 GSPKFICAPMVDQSELAFRMLTRKYGT-TLAYTPMLHSRIMTESKSYKDEFFTTCPEDRP 74 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + QL G DP L + A + + + D I++N+GCP + G++GA L+ + V VK Sbjct: 75 LFAQLCGHDPQVLIKAALMIQDQ-CDAIDINLGCPQGIARKGLYGAYLLEKREQVLTIVK 133 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 ++ +++PVT K R+ D + + + D + C + +H R + Sbjct: 134 ELKQNINVPVTCKIRMFKDRKRTLDLTKDI-----QEAGCSILTVHGRTKEQNK------ 182 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGIL 243 + D+ + ++K+ + + NGGI + + + LQ +D VM +NP + Sbjct: 183 DFVGQCDWTIIAEIKQ-ILQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENPALF 241 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF-QGIPGARQWR 302 + + + Y++ L I H+ L G+ R Sbjct: 242 SG-------------EIKDLNDLALEYMQFAKQYNARLAEIKAHLFKLLYTGLQIFTDLR 288 Query: 303 RYLSENAHKAGADINVLE 320 L V+E Sbjct: 289 SKLGSAKTYEEHLEVVIE 306 >UniRef50_A4EC62 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4EC62_9ACTN Length = 347 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 73/326 (22%), Positives = 116/326 (35%), Gaps = 30/326 (9%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY---SEEEHPVAL 68 F +APM TD R R N L Y+EMV+ + + ++EE + + Sbjct: 18 PFLMAPMAGVTDPAYRIMCRRRGAN-LAYSEMVSVAGLAYASNKTWRLVLPADEEQQICV 76 Query: 69 QLGGSDPAALAQCAKLAEARGYD---EINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 QL GS P A E R D I++N+ CP+ +V G+ LM L V+ Sbjct: 77 QLFGSKPEQFASAVAAVEERVGDRLSLIDINMACPARKVVTKGEGSALMRTPDLAEKIVE 136 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 A +PVTVK R G +D + +H R A Sbjct: 137 AAVGAAHVPVTVKIRKGFYAEDRNAAT---FAQMLEGAGAAAVAVHGRCAT--------Q 185 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGIL 243 D+ V ++ + + +G + S E+A HLQ V + R Y NP + Sbjct: 186 LYTGQADWSVVDEVADAV-EIPVIGSGDVFSAEDAAEHLQGSGASAVFIARGIYGNPWVF 244 Query: 244 AAVDRE-IFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 + G+ V + A+ ++ + + +G+P A WR Sbjct: 245 GDARALALDGTPVPSRSSVERLEALREHLTLTHELLPLMSRARTYASWYLKGMPHAAAWR 304 Query: 303 RYLSENAHKAGADINVLEHALKLVAD 328 + + E + LV D Sbjct: 305 AQVVRCST--------YEEFMALVDD 322 >UniRef50_Q6A959 TIM-barrel enzyme, NifR3 family n=2 Tax=Propionibacterium acnes RepID=Q6A959_PROAC Length = 411 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 74/335 (22%), Positives = 122/335 (36%), Gaps = 29/335 (8%) Query: 2 PEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLA 58 P V +APM T+ R L EM+T+ +++G LA Sbjct: 41 PSGGTVSVDTPVVLAPMAGVTNAAFRQLCAEQGA-GLYVCEMITSRGLVYGDHKTHGMLA 99 Query: 59 YSEEEHPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 ++E E ++QL G DP + + + E G + ++LN GCP +V G L Sbjct: 100 FAECEDVRSVQLYGVDPGMVGEATSILCEKYGVNHVDLNFGCPVPKVTRKGGGGVLPWKL 159 Query: 118 QLVADCVKAMR---DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARK 174 A V A D +PVTVKTRIGID + + +HAR Sbjct: 160 DRFAAVVSAAVQAGDAHGVPVTVKTRIGIDPEHITYID---SARAAVDSGAAAVCLHART 216 Query: 175 AWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMV 232 + + + +L + + + NG I +A A + GV V Sbjct: 217 VAEA--------YAGHSHWDAIGELVKTV-DVPVIGNGDIWEASDAMAMVGQTGCAGVEV 267 Query: 233 GREAYQNPGILAAVDREIFGSS----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHM 288 GR P + + G T + A++R + + L + +HM Sbjct: 268 GRGCLGRPWLFRDLADAFAGRDTTTLPTLGEVCAMIRRHAELLVKYQG-MHGLVDMRKHM 326 Query: 289 LGLFQGIPGARQWRRYLSE--NAHKAGADINVLEH 321 +G P + R L + + + + + L+H Sbjct: 327 AWYLKGFPVGGETRHVLGQISSFDELDSLLATLDH 361 >UniRef50_B7PPV8 tRNA-dihydrouridine synthase, putative n=1 Tax=Ixodes scapularis RepID=B7PPV8_IXOSC Length = 483 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 73/344 (21%), Positives = 127/344 (36%), Gaps = 43/344 (12%) Query: 1 MPEK-------TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG- 52 MPEK T S R+ VAPM+D ++ R R L YT M+ + Sbjct: 1 MPEKLAGYEFWTRTLKSPRYVVAPMVDQSELAWRLLGRRHGA-QLCYTPMLHASVFLKDP 59 Query: 53 --KGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFG 110 + D LA +E+ P+ +Q +DP L Q ++L ++LN+GCP + G +G Sbjct: 60 KYRRDALASCDEDQPLVVQFCANDPEVLVQASRLVVGHCC-AVDLNLGCPQAIARAGHYG 118 Query: 111 ACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFII 170 A L + L+A V+ + V +P+T K R+ + + + + C++ + Sbjct: 119 AFLQDDWDLLARMVQRVHTQVDVPITCKVRVFPEVEKTVRYAQML-----EAAGCQVLTV 173 Query: 171 HARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMD 228 H R G + + +KR + + NG I+ LE+A+ L D Sbjct: 174 HGRTREQKG------PHTGLASWEHIRAVKRSV-KIPVIANGNIQYLEDAERCLRETGAD 226 Query: 229 GVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHM 288 VM NP + ++ +S Y+ ++ H+ Sbjct: 227 AVMSAEGHLHNPYLFTGRLAPVWEAS-------------LEYLCLVRDHPCPASYVRGHL 273 Query: 289 LGLFQG---IPGARQWRRYLSENAHKAGADINVLEHALKLVADK 329 L + R L++ A A V + + Sbjct: 274 FKLMHHCLTMAENVDLREKLAK-ASALEAFEEVALRLRDRLQSR 316 >UniRef50_C4VAN5 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VAN5_NOSCE Length = 336 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 101/326 (30%), Positives = 176/326 (53%), Gaps = 13/326 (3%) Query: 8 HWSGR-FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL--AYSEEEH 64 ++ + +APMLD T + R F+RL S +T+L+TE++ +IH + L + + Sbjct: 11 NFKTKEICLAPMLDVTTANFRRFVRLTSEHTILFTELIVANTVIHIDKEKLIERLGDIDE 70 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 +Q+GGSD + + + G NLNVGCPS RVQ G FGA LM N +L+++ + Sbjct: 71 RTVVQIGGSDVNEIVNAICVLKDVGCKHFNLNVGCPSTRVQKGCFGAVLMKNKELISEII 130 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 ++ I +++K R G+D+ D+YEF DF++ + + F +HARK WL GLSPK+ Sbjct: 131 NSVYKKCDIVLSLKIRTGVDNYDTYEFFRDFVHFLVKNTPVKKFYVHARKCWLLGLSPKQ 190 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH----MDGVMVGREAYQNP 240 NR IPPL+Y VY++K +FPH+ +NGG+K + + + +DG+M+GREA +N Sbjct: 191 NRNIPPLNYSFVYKIKEEFPHVLFILNGGLKKIADFNKLFCNNNLTLDGIMIGREAIKNI 250 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 + + + + ++ + + Y+ + I + + G G ++ Sbjct: 251 LVFRSFENYLH-----ESSQDTIFSVVKKYLNKFELSKPITFRILNPLQNILHGQKGTKK 305 Query: 301 WRRYLSENAHKAGADI-NVLEHALKL 325 W+ +L+E+ HK + + ++ L Sbjct: 306 WKIFLNESVHKKKLTVSDFIDEIESL 331 >UniRef50_D1AZV6 Dihydrouridine synthase DuS n=7 Tax=Campylobacteraceae RepID=D1AZV6_SULD5 Length = 312 Score = 247 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 58/317 (18%), Positives = 120/317 (37%), Gaps = 25/317 (7%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAII---HGKGDYLAYSEEEHPVALQ 69 ++AP+ +TD R ++ + + ++EM++ A+ L S E P +Q Sbjct: 12 LALAPLAGFTDLPFRSVVKKFGAD-VTFSEMISANALRFKSEKTFKMLTKSPLEIPYIVQ 70 Query: 70 LGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 + GSD ++ + + G I+LN GCP ++ G+ L+ N + ++ ++ Sbjct: 71 IVGSDLTSIKEAVLILNDMEGIAGIDLNCGCPVPKMVAQEAGSSLLLNLDHMQRVIETIK 130 Query: 129 DVVSIPVT-VKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 + T K R+G + + + + I + +H R + Sbjct: 131 TYSNKRYTSAKVRLGFNTK-----IPELIAKACENAGADFMSMHGRT--------RSGAY 177 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAA 245 +DY + + R + + NG I SLE+A + +M+GR A NP I Sbjct: 178 KAEVDYQAIAE-ARAAVKIPVIANGDITSLEKALHVMSVTGCKNLMIGRGALGNPWIFYQ 236 Query: 246 VDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYL 305 + + T + +V Y + + + +H+ +G A ++R + Sbjct: 237 LKNGLHHVEKTKI--LEIVLEHYDAMVEFYGEK-GVSIFRKHLHTYSKGFREASEFRDKI 293 Query: 306 SENAHKAGADINVLEHA 322 + K + Sbjct: 294 NRIEDKVLMREAIAHFF 310 >UniRef50_B7G230 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G230_PHATR Length = 545 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 121/308 (39%), Gaps = 28/308 (9%) Query: 1 MPEKTD--VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GD 55 +P++T + +S + VAP+ + R ++ + + EM ++ G+ Sbjct: 175 LPDRTRKLIDFSKKVYVAPLTTVGNLPFRRIMKKFGAD-ITCGEMAVATNLLSGQSSEWA 233 Query: 56 YLAYSEEEHPVALQLGGSDPAALAQCAKLAE-ARGYDEINLNVGCPSDRVQNGMFGACLM 114 L EE +Q+ P A+ +L E D ++LN+GCP D V N GA LM Sbjct: 234 LLKRHPEEDIFGVQIAAGYPDVFARTCELIENEMNVDFVDLNLGCPLDIVCNKGSGAALM 293 Query: 115 GNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKG--ECEMFIIHA 172 + + V+ + + ++ P+++K R G + + F + + + G +IH Sbjct: 294 MRDKRLRSSVEGILETLTCPISIKMRTGW--EMTKPFAHNLVQKIQSWGLDGISAVMIHG 351 Query: 173 RKAWLSGLSPKENREIPPLDYPRVYQLKR----DFPHLTMSINGGIKSLEEAKA--HLQH 226 R + R D+ + + + + + NG I S ++ + + Sbjct: 352 R--------SRLQRYAKEADWDYISMVAKSQDMSLTTIPVIGNGDIFSYQDFEEKIAREG 403 Query: 227 MDGV-MVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHI 284 ++ M+ R A P + + + ++ + +++ + +E + + + Sbjct: 404 VNSCAMLARGALIKPWLPTEIKERRHW-DISASERLDILKDFARFGMEHWGTDQQGINNC 462 Query: 285 TRHMLGLF 292 R +L Sbjct: 463 RRFLLEWL 470 >UniRef50_A6NW05 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NW05_9BACE Length = 307 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 63/309 (20%), Positives = 104/309 (33%), Gaps = 24/309 (7%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYSEEEHPVALQLGGSD 74 M TD R R L TEMV+ A+ + L E EHP A Q+ GSD Sbjct: 1 MAGVTDMAFRTICRELGA-GYTITEMVSAKALCYQDKKSIPLLKLGEGEHPCAAQIFGSD 59 Query: 75 PAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD-VVS 132 + + A +A G D I++N+GCP +V N G+ LM + +A+ Sbjct: 60 EKCMEEAAAIAGEVSGADIIDINMGCPVPKVANSGDGSGLMRDVDKAVRVAEAVVRGAGE 119 Query: 133 IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLD 192 PVTVK R+G D C +H R + + Sbjct: 120 RPVTVKFRLGWDKGSIN---CVEFAKAMEAAGVSAVAVHGRT--------RTQMYAGTAN 168 Query: 193 YPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAVDREI 250 + + ++K+ + + NG + A L D M+GR + NP + + Sbjct: 169 WDYIREVKQAVS-IPVIANGDVFDGPAAAHILRYTGADMAMIGRGCFGNPWVFQQARAAL 227 Query: 251 FGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLS 306 G + V + + + +G+ A ++ +S Sbjct: 228 EGEEIPPLPPLAERVDTAVRQFELAAAHKGEHIACLEARKQYAWYLKGVAFAGYYKEQIS 287 Query: 307 ENAHKAGAD 315 + Sbjct: 288 HISTLEDIY 296 >UniRef50_A7I0T0 NifR3 family protein n=9 Tax=Epsilonproteobacteria RepID=A7I0T0_CAMHC Length = 310 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 62/323 (19%), Positives = 122/323 (37%), Gaps = 26/323 (8%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAY---SEEEHPV 66 + +AP+ ++D R ++ + +EM++ A++ L SE E P Sbjct: 6 NHPLFLAPLAGFSDLPLRSVVKRFGCDA-TVSEMISANALVFCSEKSLKMIKKSENETPY 64 Query: 67 ALQLGGSDPAALAQCAKLAEA-RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 +Q+ GSDP + Q ++ G D I+LN GCP +V G+ L+ N L++ ++ Sbjct: 65 FVQIAGSDPKIIKQAVEILNKIDGIDGIDLNCGCPVPKVVRQNAGSALLQNLDLLSKLIE 124 Query: 126 AMRDVVSIPVT-VKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 ++ + T K R+G D ++ + +HAR + Sbjct: 125 IIKKTSNKKYTSAKVRLGFDTKNPVNIALA-----VQNAGADFIAMHART--------RA 171 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQNPGI 242 DY + K + + NG I S + A L D +M+GR NP + Sbjct: 172 GGYSAKPDYEAIAAAKSAV-KIPLIANGNINS-QNANQILNLTKADALMIGRATIGNPWV 229 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWR 302 + + + D ++ I+ G + +H+ +G A +R Sbjct: 230 FYEIKNQKTVAVDEKIKKEIILAHFDEMIKFYGDHGAVI--FRKHLHEYSKGYADATNFR 287 Query: 303 RYLSENAHKAGADINVLEHALKL 325 ++ A + ++ ++ Sbjct: 288 CEINT-ITNAEKMRDKIKQFFEI 309 >UniRef50_Q056Y8 TRNA-dihydrouridine synthase A n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q056Y8_BUCCC Length = 348 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 128/322 (39%), Positives = 195/322 (60%), Gaps = 5/322 (1%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE-EHPVA 67 +S +FSVAPM +TD+HC YF R L++ T LYTEM+T ++ K + + +P+A Sbjct: 27 YSNKFSVAPMFKYTDQHCLYFYRQLTKKTFLYTEMITIQKMLFSKKLFKKKQIKKNNPIA 86 Query: 68 LQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAM 127 +QL G++P L+ CAK A G+ EINLN+GCPS + ++G FG LM N LV + +KA+ Sbjct: 87 IQLAGNNPLFLSLCAKKAYFLGFKEINLNIGCPSKKAKSGNFGIYLMNNPILVYNLIKAI 146 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 V I +++K R+G ++ +Y FL +FI VS C +IIHAR A L SPK+NR Sbjct: 147 YLTVPIQISIKIRLGTNENKNYRFLKNFIQLVSKNNYCIKYIIHARIANLQINSPKKNRN 206 Query: 188 IPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVD 247 IP L+Y VY++K+DFPHL + INGGIK++ E HL+++DGVM+GRE Y+NP L +D Sbjct: 207 IPLLNYSYVYKIKKDFPHLIIIINGGIKTINEINEHLKNVDGVMMGREIYKNPLFLRKID 266 Query: 248 REIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSE 307 ++IF ++ M YI++++ +G I +HML +F +P A++W+ L + Sbjct: 267 KKIFFQKKQIKIKK-FIKKMSNYIKKKIIKGVPAIKIIKHMLNIFYKLPQAKKWKHELIQ 325 Query: 308 ---NAHKAGADINVLEHALKLV 326 ++ N + Sbjct: 326 KTIYKNQIDDIFNKIHKLFDKK 347 >UniRef50_A8N483 Putative uncharacterized protein n=2 Tax=Agaricales RepID=A8N483_COPC7 Length = 561 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 64/305 (20%), Positives = 114/305 (37%), Gaps = 31/305 (10%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE---- 61 S ++ VAPM+D ++ R R L+YT M+ S Sbjct: 29 RKLGSPKYIVAPMVDQSELAFRRLCRQYGA-QLIYTPMINAKMFTDPVNKSYRASAFDIA 87 Query: 62 --------EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACL 113 + P+ +Q +DP L Q AK+ E D +++N+GCP D + G +G+ L Sbjct: 88 SGEEGDMASDRPLIVQFCANDPDQLLQSAKVVEKY-CDAVDINLGCPQDIAKRGRYGSFL 146 Query: 114 MGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR 173 + L+ + + +SIPVT K R+ D + + E+ + + ++ H R Sbjct: 147 QDDWPLIYSMINTLHVNLSIPVTAKFRVFPDVEKTVEYA-----KMLERAGAQILTCHGR 201 Query: 174 KAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVM 231 G + D+ ++ +K + + NG I ++ L+ DGVM Sbjct: 202 IREQRG------QNTGLADWSKIRAVKEAV-KVPVFANGNILFQDDIARCLEETGCDGVM 254 Query: 232 VGREAYQNPGILAAVDREIFGSSDTDAD---PVAVVRAMYPYIERELSQGTYLGHITRHM 288 NP + +D D + + Y I L T + + H+ Sbjct: 255 SAEGILYNPALFYGLDAPSSSPKPPTTDLYPMHTTLASQYLSIVLSLKTKTPVSAVKGHL 314 Query: 289 LGLFQ 293 L + Sbjct: 315 FKLMR 319 >UniRef50_Q6P1R4 tRNA-dihydrouridine synthase 1-like n=12 Tax=Euteleostomi RepID=DUS1L_HUMAN Length = 473 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 114/311 (36%), Gaps = 35/311 (11%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD-----YLAYSEEEHPV 66 R VAPM+D ++ R R L YT M+ + Y E+ P+ Sbjct: 18 RHVVAPMVDQSELAWRLLSRRHGA-QLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPL 76 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q +DP Q A LA+ D I+LN+GCP + G +GA L L+ + Sbjct: 77 IVQFCANDPEVFVQAALLAQDY-CDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILL 135 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + +S+PVT K R+ + + + K C++ +H R G Sbjct: 136 AHEKLSVPVTCKIRVFPEIDKTVRYAQML-----EKAGCQLLTVHGRTKEQKG------P 184 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILA 244 + + +++ + + NG I+ L++ + L + GVM NP + Sbjct: 185 LSGAASWEHIKAVRKAVA-IPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFE 243 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG-IPGARQWRR 303 ++ Y++ L ++ H+ L+ + ++ R Sbjct: 244 GRSPAVW-------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELRE 290 Query: 304 YLSENAHKAGA 314 L++ G Sbjct: 291 ELAKVKTLEGI 301 >UniRef50_Q12U52 tRNA-dihydrouridine synthase n=2 Tax=Archaea RepID=Q12U52_METBU Length = 318 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 72/327 (22%), Positives = 139/327 (42%), Gaps = 29/327 (8%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEE 62 V G +AP+ + T+ R + +L +TEM+++ A+++G +E Sbjct: 5 RVDLPGNLLLAPLAEVTNLAFRLMCKKYGA-SLCFTEMISSDAVVYGNASSAMRGITCDE 63 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 E P LQL G+ P + + A + E Y D I++N+GCP+ + N G+ L+ + +LV+ Sbjct: 64 ERPFGLQLFGNSPEVITEAALVLEDMFYPDMIDINLGCPAPVITNAGCGSALLESPELVS 123 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 D + + V PVT K R+ +S D + + G C +H R Sbjct: 124 DIFSTLCEGVDTPVTAKIRVL----ESRAATLDMAHRLEDAGVCA-ITVHGRTC------ 172 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQN 239 E D+ +K + + + +NG I+ A+ L+ DG+M+GR A + Sbjct: 173 --EQGYSGTADHSYAKLIKEELS-IPVIVNGDIRDGVSAEKVLEYTGCDGLMIGRAAMGD 229 Query: 240 PGILAAVDREIFGSSDT----DADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI 295 P + + R + + ++ + + +LS L H+ +G+ Sbjct: 230 PHVFHRISRYLDDGEVIGCGCEQKRDDLLEYLDLLEKFDLSSHINL---KAHVQWFTRGL 286 Query: 296 PGARQWRRYLSENAHKAGADINVLEHA 322 G+R+ R + A + + +++ Sbjct: 287 KGSRRMRSDIG-YADSRDSIVEFVKNM 312 >UniRef50_A9BIR6 Dihydrouridine synthase DuS n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIR6_PETMO Length = 301 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 66/321 (20%), Positives = 121/321 (37%), Gaps = 26/321 (8%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE--EHPV 66 + +APM D+TD R R +TEM++ +II + E + Sbjct: 2 LENQIGLAPMADYTDYPFREICRRFGAK-FTFTEMISVDSIIRENEKVEKMLPQKGEDNI 60 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +QL G++ + AK + I++N CP ++V GA L+ N +L+ D V Sbjct: 61 GVQLFGNETTKFIEAAKSIQHL-ASWIDINAACPVNKVVKKGSGAALLKNPKLLGDIVFN 119 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 ++ + +PV VK R+G D + + + K + I+H R + Sbjct: 120 LKKSIDLPVGVKVRLGYD-----QINIEEVAETVEKAGADYIIVHGRT--------RSQM 166 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILA 244 + + +LK + + +G + S ++ +L D V+V R A NP I Sbjct: 167 YSGIANREILKKLKAKIT-IPLGASGDVFSKKDIDDYLLNYGADFVLVARGAIGNPWIFT 225 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY-LGHITRHMLGLFQGIPGARQWRR 303 + T + + + Y + + ++ F GI GA++ RR Sbjct: 226 K-----NNYNPTIDERIDTCLEHLKLMIEFYGSEVYAVKKFRKVLMKYFSGIEGAKEIRR 280 Query: 304 YLSENAHKAGADINVLEHALK 324 L V + + Sbjct: 281 NLDLLLSYNDVAEMVYKTLKR 301 >UniRef50_C8W6Y9 TIM-barrel protein, nifR3 family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W6Y9_ATOPD Length = 363 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 69/326 (21%), Positives = 122/326 (37%), Gaps = 25/326 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE---EHPV 66 + +APM +D R R L Y+EMV+ I G E E + Sbjct: 36 ANPVLMAPMAGVSDGVYRTMARA-GGAGLAYSEMVSVAGIHFGGEKTWELVEPLSTEPDI 94 Query: 67 ALQLGGSDPAALAQCA-KLAEARG--YDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 A+QL GS P + A +++E G I++N+ CP +V G+ L+ +L A+ Sbjct: 95 AVQLFGSKPEQFKEAAAQISERLGNKLALIDINMACPVPKVVKKGEGSALLDTPELAANL 154 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 VKA V++PVTVK R G + +H R A Sbjct: 155 VKACLSEVTVPVTVKIRRGRRQDEEVA---PEFARAMEAAGASAIAVHGRFAT------- 204 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPG 241 ++ V ++ + + +G + S E+ L + VM+ R Y NP Sbjct: 205 -QMYRGQAEWETVNRVCDAVS-IPVIGSGDMLSAEDVAHALKETGVTAVMIARGTYGNPW 262 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 I + G + ++ + +++ + ++ F+GIP A W Sbjct: 263 IFKNTQALLEGKTPFVPSVDQMLASFMMHVKLLDAAHIHIARARSLSTWYFRGIPNAAYW 322 Query: 302 RRYLSENAHKAGADINVLEHALKLVA 327 R + + + ++ AL++ Sbjct: 323 RGK----SVRCVTAQDFIDLALEIKE 344 >UniRef50_C1E909 tRNA-dihydrouridine synthase (Fragment) n=2 Tax=Micromonas RepID=C1E909_9CHLO Length = 353 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 131/332 (39%), Gaps = 23/332 (6%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEE 62 S +F VAPM+D ++ R R T YT M+ + + + Sbjct: 30 RSMGSPKFHVAPMVDQSELAFRELCRRHGA-TCAYTPMIHARLFVEDLKYRKEIFTTHIN 88 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 + P+ +Q +DP L + A + D +++N GCP + G +GA LM + + V + Sbjct: 89 DRPLLVQFCANDPDMLLKAASIVAPH-CDGVDINFGCPQRIAKRGRYGAFLMDDWETVHN 147 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 + + +S+PVT K R+ D + S ++ + ++ +H R + Sbjct: 148 LINKLDKHLSVPVTAKIRVYDDLETSLKYA-----KMVEAAGAQLIAVHGRTREQKRAAD 202 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNP 240 ++ + ++K+ + + NG I++L EA+ L+ DGV+ +NP Sbjct: 203 VR------ANWAFIREIKKQL-KVPVLANGDIRTLAEAEKCLEATGADGVLSAEPLLENP 255 Query: 241 GILAAVDREIFGSSDTDADPVAVV--RAMYPYIERELSQGTYLGHITRHMLGLFQG-IPG 297 + + V ++ Y+E + T L + H+ + + Sbjct: 256 SLFSDPPLYSPSDPAHPLPVEGDVNCELLHEYLEITRTYQTPLRMVKGHVHNMVGSWLKE 315 Query: 298 ARQWRRYLSENAHKAGADINVLEHALKLVADK 329 R +L++ H ++ L+ K + + Sbjct: 316 FTDLRDWLNKTPHS-EMTVDKLQAWTKELQGR 346 >UniRef50_A1VHK2 Dihydrouridine synthase, DuS n=10 Tax=Desulfovibrionaceae RepID=A1VHK2_DESVV Length = 449 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 116/320 (36%), Gaps = 27/320 (8%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEEHPVALQL 70 +AP+ ++D R R + TEMV+ +I+ G D LA + E+ P+ +QL Sbjct: 35 WLAPLAGYSDLSFRLLCRKAGA-AVCCTEMVSAKGLIYYSPGTRDLLATTPEDAPLVVQL 93 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G DP + + + +G+ +LN+GC +V GA ++ + +AM Sbjct: 94 FGCDPDIMVRAMEPLLEQGFRWFDLNMGCSVPKVVKTGCGAAMLRDVPQALAVARAMLRT 153 Query: 131 VSI-PVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIP 189 V K R+G D +H R A Sbjct: 154 AGAGRVGFKFRLGWDVGQEVWADL---GRALADLGAGWVTLHPRYA--------RQGFSG 202 Query: 190 PLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAVD 247 + + +L R + + +G + + + L + VM R A +PG+ A Sbjct: 203 EARWSTLGELVRAVS-VPVIASGDLFTAADGVRCLRETGVASVMYARGALNDPGVFHAHR 261 Query: 248 REIFGSSDTDADP---VAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRY 304 + G D P A++ + + L + + + +PGAR R++ Sbjct: 262 ERVAGRPDPGYTPQRLRALITRHAELARQYAPGRSALLKMRTFVPRYVRHLPGARALRQH 321 Query: 305 LSENAHKAGADINVLEHALK 324 L+ + +L+ L Sbjct: 322 LASC-----FEWEMLDELLA 336 >UniRef50_C9RMP3 Dihydrouridine synthase DuS n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP3_FIBSS Length = 392 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 123/317 (38%), Gaps = 34/317 (10%) Query: 1 MPEKTDVHWSGR-----FSVAPMLDWTDRHCRYFLRLLSRN--TLLYTEMVTTGA---II 50 +P+K + + ++PM TD R R+LS + LL +E V T Sbjct: 7 LPKKVRFNLRNKEIFPNTILSPMDGVTDAPFRRLCRVLSGDRMGLLVSEFVPTDGDAVFN 66 Query: 51 HGKGDYLAYSEEEHPVALQLGGSDPAALAQCA-KLAEARGYDEINLNVGCPSDRVQNGMF 109 L + EE P +Q+ G P +A A K+AE + I +N GCP+ +V Sbjct: 67 PDGHKQLKFFPEERPFGVQIFGRFPDRMAAAAGKIAERYHPEFIEVNAGCPAPKVAGKGS 126 Query: 110 GACLMGNAQLVADCVKAMRDVVS-----IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGE 164 G+ L+ + + + + ++ V+ IP+T+K RIG DD ++ Sbjct: 127 GSGLLRDLPRLQEILHDVKAVLDAKTPEIPLTLKCRIGWDDDSIN---VMETLKIAEGEG 183 Query: 165 CEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL 224 EM +H R + ++ + ++ + + NG + S+E A+ + Sbjct: 184 VEMLTVHGRT--------RLQGYNGLANWDWIGKVAAAA-KIPVIGNGDVNSVECARERI 234 Query: 225 Q--HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQG---- 278 + GV +GR A NP I + G + Y + ++ G Sbjct: 235 NTYGVSGVSIGRGAMHNPWIFGQIADAWEGREKHVITAQEALDVFPLYYKFKIEDGATEM 294 Query: 279 TYLGHITRHMLGLFQGI 295 +G + + L +G Sbjct: 295 NAMGRMKQLAARLCKGF 311 >UniRef50_C1ZB06 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB06_PLALI Length = 381 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 69/334 (20%), Positives = 124/334 (37%), Gaps = 26/334 (7%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYS 60 R+ +AP+ +T R R LR L L T++V ++ +A S Sbjct: 42 IGRRQIPSRYGLAPLAGYTQRPFRVALRELGGMGLATTDLVHAVKLLSNNAFSQQLIATS 101 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 + P+++QL G+DP +A A+ E GY+ ++LN+GCP +V + GA LM + Sbjct: 102 LLDQPLSVQLFGADPTHVATAARWLEDLGYEGVDLNMGCPMAKVNSQGGGARLMCDPTGA 161 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 V + VSIPVTVK R+G D Q + + IH R Sbjct: 162 TRLVALVVASVSIPVTVKMRLGWDAQS---LSAPLLARQFEEVGAAAITIHGRT------ 212 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQ 238 + + + + + NG ++++E+A + V +GR A Sbjct: 213 --RAQGFSGKVSREGIAATVAAVQSIPVIGNGDVRTVEDAISMRRETGCAAVAIGRGAML 270 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQ--GTYLGHITRHMLGLFQGIP 296 +P I + + P ++ + + + + Sbjct: 271 DPWIFRKLHDFEMTGQYAEPGPEEQIQFLVTHFREMVDLFGEQATRLFRKFAGWY----- 325 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVADKR 330 GA R + ++ + L ++VA+ R Sbjct: 326 GA---RLGIPQDLEDRLRRVESLSEFEEIVAEIR 356 >UniRef50_Q9T0J6 tRNA-dihydrouridine synthase 3-like n=10 Tax=Magnoliophyta RepID=DUS3L_ARATH Length = 700 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 55/299 (18%), Positives = 113/299 (37%), Gaps = 22/299 (7%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAY 59 +K + + + +AP+ + R ++L + + EM ++ G+ L Sbjct: 339 KKKLIDFRDKLYLAPLTTVGNLPFRRLCKVLGAD-VTCGEMAMCTNLLQGQASEWALLRR 397 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E +Q+ GS P +++ +L + D I++N+GCP D V N G+ L+ Sbjct: 398 HSSEDLFGVQICGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALLNKPL 457 Query: 119 LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLS 178 + + V+ +V P+T+K R + + + I + G IH R Sbjct: 458 RMKNIVEVSSSIVETPITIKVRTAFFEGKN--RIDSLIADIGNWG-ATAVTIHGR----- 509 Query: 179 GLSPKENREIPPLDYPRVYQL-KRDFPHLTMSINGGIKSLEEAKAH---LQHMDGVMVGR 234 ++ R D+ +YQ K +L + NG + S + H + M+ R Sbjct: 510 ---SRQQRYSKSADWDYIYQCTKNATTNLQVIGNGDVYSYLDWNKHKSDCPELSSCMIAR 566 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 A P I + + T + + +++ + ++ S + +L Sbjct: 567 GALIKPWIFTEIKEQRHW-DITSGERLNIMKDFVRFGLQHWGSDTKGVETTRHFLLEWL 624 >UniRef50_C4VA23 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4VA23_NOSCE Length = 327 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 62/333 (18%), Positives = 132/333 (39%), Gaps = 34/333 (10%) Query: 5 TDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-----GDYLAY 59 ++ + +APM+ ++ R R + + YTEMV I K + Sbjct: 5 KNLKKPYKV-LAPMVGNSELAWRILARRYGAD-ICYTEMVNCDTFIRSKINPLSNRWYTT 62 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 ++ + P+ +Q+ G+D + + + + + D I++N+GCP + + G +G+ LM + Sbjct: 63 NKIDRPLIIQICGNDVNKMLKVSLILQEY-CDAIDINLGCPQEIARKGNYGSFLMDDLLK 121 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 V + V + + + +PVT K RI + S E+ + + C+M +H R G Sbjct: 122 VKEIVTVLSNNLKVPVTCKIRIFESIEKSVEYA-----KMIEQAGCKMLTVHGRTRDQRG 176 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAY 237 L + + +K ++ + NG I + + +++ DGVMV Sbjct: 177 L------NTGLASWDHIRAIKASL-NIPVISNGNIINNSDIDNCVEYTKCDGVMVAETHL 229 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI-P 296 NP I + R + +++ + ++ + I H L + Sbjct: 230 YNPLIF--IKRHSKTN-------ISIYKEYLNIFLENYNE-YDIHTIKSHTFKLLKKFLK 279 Query: 297 GARQWRRYLSENAHKAGADINVLEHALKLVADK 329 ++ +++ IN+ + + DK Sbjct: 280 QYPEFSEHINLCKTLKD-YINLCDVLETFIKDK 311 >UniRef50_Q5KC68 tRNA-dihydrouridine synthase 3 n=2 Tax=Filobasidiella neoformans RepID=DUS3_CRYNE Length = 725 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 60/308 (19%), Positives = 107/308 (34%), Gaps = 33/308 (10%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 EK ++W G +AP+ + R T+ +EM +++G + Sbjct: 350 EKRRLNWEGGRYLAPLTTVGNLPFRRLCVDYGA-TITVSEMALAQPLVYGAKEEWALVRR 408 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR-----GYDEINLNVGCPSDRVQNGMFGACLM 114 E E +Q+ G P + A++ G D +++N+GCP D V N G+ LM Sbjct: 409 HESEKMFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDLVFNQGAGSALM 468 Query: 115 GNAQLVADCVKAMRDVV-SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR 173 + + + M + IP+TVK R G+ I + IH R Sbjct: 469 DSPGRLGKLLVGMNRALGDIPLTVKFRTGVAHGKPNA--HKLIPRFVTEWGAGALTIHGR 526 Query: 174 KAWLSGLSPKENREIPPLDYPRVYQLK---------RDFPHLTMSINGGIKSLEEAKAHL 224 ++ R P D+ + + P + + NG S + Sbjct: 527 --------SRQQRYSKPADWEYIKTCVTALRESVADANLPPVPIFGNGDCFSAASYYEEM 578 Query: 225 Q--HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYL 281 +DGVMV R A P I + E + + + ++ + + S + Sbjct: 579 DRSGVDGVMVARGALIKPWIFTEIK-ERREWDISAVERLEGIKKFAEFGLSHWGSDTQGV 637 Query: 282 GHITRHML 289 R + Sbjct: 638 NTTRRFLC 645 >UniRef50_A4RQU5 Predicted protein n=2 Tax=Ostreococcus RepID=A4RQU5_OSTLU Length = 608 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 118/300 (39%), Gaps = 22/300 (7%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYL 57 + EK + + + +AP+ + R + L + + EM +++ G + L Sbjct: 237 VEEKRTIDFKDKLYLAPLTTVGNLPFRRVCKTLGAD-ITCGEMALCTSLLQGLPSEWALL 295 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEAR-GYDEINLNVGCPSDRVQNGMFGACLMGN 116 + E +Q+ G P ++ +C +L E D I++N+GCP D V +G+ ++ Sbjct: 296 RRHKSEDIFGVQICGGYPDSVTRCCQLLEDTIDVDFIDINMGCPIDSVCQKGYGSMMLEK 355 Query: 117 AQLVADCVKAMRDVVS-IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 + + ++A + +T KTR+ D+ F V+ G +H R Sbjct: 356 PKKMETVIRAASAALGKCSLTFKTRMAYTDKSRVAHT--FAPKVAEWG-AAAMTLHGRT- 411 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVG 233 + R D+ +L ++ + + NG + ++ HL+ +D M+ Sbjct: 412 -------RAQRYRSVADWEY-TKLTKESSSVPLIGNGDVYMQKDYYTHLEEHSVDTCMLA 463 Query: 234 REAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 R A P + + E + + ++++ + +E S + +++L Sbjct: 464 RGALIKPWLFTEIK-ERRDWDISSRERFDILKSFASFGLEHWGSDTRGVESTRKYLLEWM 522 >UniRef50_UPI0001BCCF0E nifR3 family TIM-barrel protein n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCCF0E Length = 429 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 72/376 (19%), Positives = 120/376 (31%), Gaps = 73/376 (19%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSR------------------------------ 35 D+ +APM T+ R Sbjct: 14 DLTVDVPVVLAPMAGVTNAAFRQLCAEQGALRGSQARTSGQALRGSQARTSGQALRGSQA 73 Query: 36 -----------------NTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPVALQLGGSDP 75 L EM+T+ ++ G L ++ E ++QL G DP Sbjct: 74 RTSGQALRGSQARTSGQAGLYVCEMITSRGVVEGDRTSLGMLTFAPNERVRSVQLYGIDP 133 Query: 76 AALAQCAKLAE-ARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV--- 131 A + + + G D ++LN GCP +V GA L A L+ + Sbjct: 134 ATVGRAVAILCGDHGVDHVDLNFGCPVPKVTRKGGGAALPWKATLLGRILTEAVAAAAPF 193 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 +PVT+KTR GIDD ++ C +H R A Sbjct: 194 GVPVTMKTRKGIDDDHLTYLD---AGHIAEDSGCAAIALHGRTAV--------QHYSGEA 242 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAVDRE 249 D+ + LK + + NG + +A + DGV+VGR P + + Sbjct: 243 DWAAIAALKAAVS-IPVLGNGDVWEAADALRMVRETGCDGVVVGRGCLGRPWLFRDLAAA 301 Query: 250 IFGSS-----DTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRY 304 G T + +A++R + L + +H+ +G P R+ Sbjct: 302 FTGEETVPALPTLGEVMAIMRRHAELLGGWLGEERGCVEFRKHVAWYLKGFPAGPSVRQR 361 Query: 305 LSENAHKAGADINVLE 320 L + + A D ++E Sbjct: 362 LGQVSSYAALDELLVE 377 >UniRef50_C7H613 tRNA-dihydrouridine synthase n=3 Tax=Ruminococcaceae RepID=C7H613_9FIRM Length = 340 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 107/259 (41%), Gaps = 18/259 (6%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAY 59 + ++ R PM +TD R + +EMV++ A+++G L Sbjct: 41 KIREISLPHRAVFGPMAGFTDAPARRLMAQHGA-GFTVSEMVSSRALVYGDHKTVSLLKA 99 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 P +Q+ G P + Q A E +D +++N+GCP+ ++ +G G+ LM + Sbjct: 100 EPNGAPYGVQIFGEVPEIMGQAAAAVEQYAFDFLDINMGCPAPKIVSGGAGSKLMLDPDR 159 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 V+ + S PVTVK R G D + + + +HAR Sbjct: 160 CGRIVEEVVKNTSRPVTVKMRKGWDAEHVTAVE---CAKACEQAGAVLIAVHART----- 211 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAY 237 +E P +D + +K H+ + NG I++ E+A ++ DGVM+ R A Sbjct: 212 ---REQMYTPGIDPSIIAAVKDAV-HVPVLGNGDIRTAEDAVRMVEETGCDGVMIARAAL 267 Query: 238 QNPGILAAVDREIFGSSDT 256 +P + V+ + G Sbjct: 268 GDPWLFERVNAALEGLPRP 286 >UniRef50_UPI000180C543 PREDICTED: similar to dihydrouridine synthase 1-like n=2 Tax=Eumetazoa RepID=UPI000180C543 Length = 626 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 114/313 (36%), Gaps = 33/313 (10%) Query: 6 DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE---- 61 V S +F VAPM+D ++ R R L ++ M + +H + Sbjct: 10 RVLKSPKFVVAPMVDQSELPWRLLSRRHGA-QLCFSPMYSANTFVHDHTYRNKVVQDLSS 68 Query: 62 -EEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E+HP+ +Q + + +KL E + ++LN+GCP + G FGA L + L+ Sbjct: 69 TEDHPLIVQFCSNSAENFLEASKLVEGL-CEGVDLNLGCPQHIAKRGHFGAYLQEDWDLI 127 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 + + + + I VT K R+ + + ++ C++ +H R G Sbjct: 128 IEIISTTKQHIGIGVTAKIRVFNEIDKTVKYAQML-----ETAGCDIITVHGRTREQKG- 181 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQ 238 + + +K + + + NG I+ + ++ +DGVMV Sbjct: 182 -----PNTGLASWDHIKAVKDNV-DIPVFANGNIQYYCDIMRCMETTGVDGVMVAEGNLT 235 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLG-LFQGIPG 297 NP I + T + VV + + + L HM + + Sbjct: 236 NPMIFQDLS--------TPCNVYDVVEEYFALVAQY---PCPLSSARSHMFRIWARTLLI 284 Query: 298 ARQWRRYLSENAH 310 + R + + Sbjct: 285 HKDMRERIGSANN 297 >UniRef50_D1AWB1 Dihydrouridine synthase DuS n=12 Tax=Fusobacteriaceae RepID=D1AWB1_STRM9 Length = 305 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 140/319 (43%), Gaps = 26/319 (8%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK-GDYLAYSEEEHPVALQL 70 + APM TD R + + +TEMV+ +++ + L E +Q+ Sbjct: 4 KIYTAPMAGVTDYTFRKIIEDF-KPDFTFTEMVSVDKLLYKEVPKILKLRENN---IVQI 59 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G D + + AK E+ G EINLN GCP ++ N G+ L+ + + + + + A+R+V Sbjct: 60 FGKDIYLMQKAAKYIESMGVKEINLNCGCPMKKIVNSGHGSALIKDPRKIEEILTALREV 119 Query: 131 VSIP--VTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 + +++K R+G D ++Y + + C IIH R +E + Sbjct: 120 LDPKTALSLKIRVGYDKPENYLEIAKIAEKLK----CSNIIIHGRT--------REQKYS 167 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAV 246 D+ + ++K + ++ + NG I + A + ++DG+M+ R NP +++ + Sbjct: 168 GEADWKYIKEVKDNV-NIKVIGNGDIFDAKNAIEKIRETNVDGIMLARGILGNPWLISQI 226 Query: 247 DREI-FGSSDTDADPVAVVRAMYPYIERE--LSQGTYLGHITRHMLGLFQGIPGARQWRR 303 FG T + + +++ ++ + I ++++ + I G + + Sbjct: 227 KELFEFGEIKTIVRDIDRINMAIRHVKEYAIDNENVFFPDIRKYIIWYIENIKGIDETKN 286 Query: 304 YLSENAHKAGADINVLEHA 322 ++++ + I +LE Sbjct: 287 LINQSF-EYDEIIELLEKI 304 >UniRef50_A4S141 Predicted protein (Fragment) n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S141_OSTLU Length = 307 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 66/306 (21%), Positives = 122/306 (39%), Gaps = 23/306 (7%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHP 65 + R+ VAPM+D ++ R + TL YT M+ + + + + S + P Sbjct: 14 GNPRYHVAPMVDQSELAFRELCKRYGA-TLGYTPMIHARLFVESPKYRREIFSTSTRDRP 72 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 + Q +DP L + A + D +++N GCP + G +GA LM + + V ++ Sbjct: 73 LLAQFCANDPEILLRAATMIAPY-CDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEALIR 131 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 + + + +PVT K R+ D + + ++ + ++ +H R + Sbjct: 132 KLDEELPVPVTAKIRVYDDLETTLKYA-----KMVEAAGAQIVAVHGRTREQKRCADIR- 185 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL 243 ++ + +K + + NG I+SL EA+A L+ DGV+ NP + Sbjct: 186 -----ANWAYIRAIKDAL-KVPVLANGDIRSLAEARACLEATGADGVLSAEPLLSNPALF 239 Query: 244 AA---VDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF-QGIPGAR 299 + G + D VA V M Y + S T +I H+ L + Sbjct: 240 SDPPFYAAPTDGYAPIPLDGVAAVDLMIEYFDICKSYTTSFSYIRGHVWKLVGHWMSEFT 299 Query: 300 QWRRYL 305 R Sbjct: 300 DLRDEF 305 >UniRef50_C7LQM9 Dihydrouridine synthase DuS n=2 Tax=Desulfovibrionales RepID=C7LQM9_DESBD Length = 324 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 62/315 (19%), Positives = 113/315 (35%), Gaps = 24/315 (7%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYL 57 M + + + +AP+ ++D R + TEMV+ +I+ G + L Sbjct: 1 MKKTLFPITADKPWLAPLAGFSDLPFRLLCHEYGCHA-AVTEMVSAKGLIYDSPGTNELL 59 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 +++ P+ +QL GS+ L Q + G+ +LN GCP +V GA L+ Sbjct: 60 QTCDQDSPLVVQLFGSEEPFLVQSIERLRKAGFRYFDLNCGCPVRKVIKTGSGAALLKEP 119 Query: 118 QLVADCVKAMRDVVSIPVTV--KTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 + + K+M D P + K R+G + T + +H R Sbjct: 120 ENLLKIAKSMIDAAE-PGCMGFKIRLGWYVGQPVYL---QVATKLEELGAGWVTMHPRFG 175 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVG 233 D+ + LK L + +G + E+A ++ +D +M Sbjct: 176 --------AQGFTGHADWSHLKTLKERVT-LPVIASGDLFHAEDAIKCIEQTSVDSIMFA 226 Query: 234 REAYQNPGILAAVDREIFGSSDTDADP---VAVVRAMYPYIERELSQGTYLGHITRHMLG 290 R A +P I + +VR + + L + + Sbjct: 227 RGALNDPSIFTRYLQLRRHEEPPAKSWQQMEDMVRRLSELYPQHGMDRLGLLKMRTLVPR 286 Query: 291 LFQGIPGARQWRRYL 305 +G+PGAR RR + Sbjct: 287 FLKGLPGARALRRDI 301 >UniRef50_C5DS92 ZYRO0B14872p n=1 Tax=Zygosaccharomyces rouxii RepID=C5DS92_ZYGRO Length = 406 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 67/339 (19%), Positives = 125/339 (36%), Gaps = 32/339 (9%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAII----HGKGDYLAYSEE-- 62 VAPM+D ++ R R TL YT M + K + + Sbjct: 17 GKPTKIVAPMVDQSELAWRILSRKYGA-TLAYTPMFHAKLFATSPKYRKDMWCEMDGDSK 75 Query: 63 -EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 + P+ +Q +DP L Q A+L + + D ++LN+GCP + G +G+ LM LV Sbjct: 76 IDRPLVVQFCANDPEYLLQAARLVQDK-CDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVH 134 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 ++ + + + +PVT K RI + + S ++ + +H R G Sbjct: 135 KLIRNLHENLDVPVTAKIRIFPEKEKSLQYA-----RTVLDAGAQFLTVHGRLREQKG-- 187 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSI-NGGIKSLEEAKAHLQH--MDGVMVGREAYQ 238 ++ D+ + L+ + P T+ NG + + + D VM Sbjct: 188 ----QQSGLADWETIKYLRDNLPPDTVFFSNGNLLYPNDISRCMDQINCDAVMSAEGNLY 243 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI-PG 297 NPGI A D + D + R + ++ + H+ + + P Sbjct: 244 NPGIFNAEDSQDKEKVFPRVDV--ICREYFEIVKSYEFSHASRTAMKSHLFKILRPFLPN 301 Query: 298 ARQWRRYLS--ENAHKAGADINV----LEHALKLVADKR 330 R L+ N +E+ +K + +++ Sbjct: 302 HTDIRSSLALLNAKSSLDDYENAVVIPVENVVKSIFEEK 340 >UniRef50_Q9HGN6 tRNA-dihydrouridine synthase 1 n=1 Tax=Schizosaccharomyces pombe RepID=DUS1_SCHPO Length = 399 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 118/318 (37%), Gaps = 27/318 (8%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI-----IHGKGDYLAYSEEE 63 + +APM+D ++ R R + L Y+ M + K EE Sbjct: 16 GRPKRILAPMVDQSELPWRILARRSGAD-LCYSPMFHSRLFGESEDYRNKVFSTRTIPEE 74 Query: 64 HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADC 123 P+ +Q G+DP + + AK+A D +++N+GCP + G +G+ L N L+ Sbjct: 75 RPLIIQFCGNDPEIMLKAAKIAAPY-CDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESI 133 Query: 124 VKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + + +SIPVT K RI D Q + ++ + K + +H R G Sbjct: 134 ITKLHTELSIPVTAKIRIFPDPQKTLDYA-----KMILKAGASILAVHGRLREQKG---- 184 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTM-SINGGIKSLEEAKAHL--QHMDGVMVGREAYQNP 240 D+ ++ L+++ P T+ NG I ++ + +DGV+ + NP Sbjct: 185 --HFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNP 242 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPG- 297 I + + I + Y L I H+ L + + Sbjct: 243 RIFLPPSSPLMTLYPRI---DDMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSI 299 Query: 298 ARQWRRYLSENAHKAGAD 315 R L++ + Sbjct: 300 HTDIRSKLAQGCTPRDFE 317 >UniRef50_Q4P1U2 tRNA-dihydrouridine synthase 3 n=4 Tax=Eukaryota RepID=DUS3_USTMA Length = 867 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 110/319 (34%), Gaps = 42/319 (13%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AY 59 EK ++W G +AP+ + R + + EM + +HG Sbjct: 482 EKRRLNWRGELYLAPLTTTGNLPFRRICTGYGSD-IHCGEMGLAESFLHGNAAEWSLVRR 540 Query: 60 SEEEHPVALQLGGSDPAALAQCAKLAEAR---GYDEINLNVGCPSDRVQNGMFGACLMGN 116 E E QL G P L A+ +A G D +++N GCP D V N G+ L+ + Sbjct: 541 HESERIFGTQLCGGKPDLLVPVAEALKAEVGDGLDFVDINCGCPIDLVFNKGAGSALLDH 600 Query: 117 AQLVADCVKAMRDVV-SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 ++ V+ M V+ P+T+K R G + + + +H R Sbjct: 601 PTKLSKIVRGMNAVLGDTPLTIKLRTGTGAKQT---THKIFAKAQTEWRVAAATLHGR-- 655 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKR-------------------DFPHLTMSINGGIKS 216 ++ R D+ + + + + NG + S Sbjct: 656 ------SRKQRYKNDADWGYIATCANTLRESVSEWNESSRFADEPEMVPIPVYGNGDVYS 709 Query: 217 LEEAKAHLQ--HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IER 273 ++ ++ H+DG M+ R A P + + E + + + ++R Y + Sbjct: 710 WQDYYERIERTHVDGEMIARGALIKPWLFTEIK-ERRDWDISSRERLDMMRKFAEYGLTH 768 Query: 274 ELSQGTYLGHITRHMLGLF 292 S + R M + Sbjct: 769 WGSDTHGVNTTRRFMCEMM 787 >UniRef50_A3VWV8 TRNA-dihydrouridine synthase, putative n=4 Tax=Rhodobacterales RepID=A3VWV8_9RHOB Length = 339 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 68/318 (21%), Positives = 123/318 (38%), Gaps = 26/318 (8%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS 60 M + D + +APM TD R + L+ +EMV + ++ K + Sbjct: 1 MLKIADRQIATPVFLAPMAGITDLPFRTVVAGFGA-GLVVSEMVASQEMVQAKPSARGKA 59 Query: 61 EEE---HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQ----NGMFGACL 113 E ++QL G DP +A+ A++ G I++N+GCP+ +V G G+ L Sbjct: 60 ELGFGIENTSVQLAGCDPHWMAEAARVVADHGARIIDINMGCPAKKVVSAAGAGASGSAL 119 Query: 114 MGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHAR 173 M + ++A+ V +PVT+KTR+G D+ S + M +H R Sbjct: 120 MRDLDHALRLIEAVVGAVDVPVTLKTRLGWDEGCSNAAEL---AKRAEAAGVAMITVHGR 176 Query: 174 KAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVM 231 + D+ + + + ++ + NG I + A + GVM Sbjct: 177 T--------RCQFYRGAADWAMISDIAQAV-NIPVIANGDIVGVASACRAMAQSNAAGVM 227 Query: 232 VGREAYQNPGILAAVDREIFGSSDTDADPVAVVRA----MYPYIERELSQGTYLGHITRH 287 +GR A P +LA V + + + AV+ Y + + L +H Sbjct: 228 IGRGARGRPWLLAEVAAAMGHGTAPEVPRGAVLADLVAGHYEAMLGFYGRDLGLRVARKH 287 Query: 288 MLGLFQGIPGARQWRRYL 305 + + + RR + Sbjct: 288 LGWYMEAAGSDPEMRRAV 305 >UniRef50_B0SC53 tRNA-dihydrouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SC53_LEPBA Length = 316 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 72/328 (21%), Positives = 134/328 (40%), Gaps = 27/328 (8%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE--------- 62 R +APM D R L + +E + + + + E Sbjct: 2 RIILAPMEGLLDFRLREILTQIGGYDECVSEFIRVNDTLLPPHRFFRTAPELKNSSRTKS 61 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 + PV +Q+ GSDP +A A L + G I++N GCP+ V GA L+ L+ Sbjct: 62 DTPVKIQILGSDPNRMADNAHLVASLGAYGIDINFGCPAPTVNRNRGGAALLKEPNLMYS 121 Query: 123 CVKAMRDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 VKA+R+VV IPVT K R+G +S E D +G + ++HAR Sbjct: 122 IVKAVRNVVPENIPVTAKMRLGY---ESTELALD-CAKALEEGGAKEIVVHART------ 171 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQ 238 K + PP + + ++K + + NG I ++++A + D +M+GR A Sbjct: 172 --KTDGYKPPAYWEWIAKIK-SILKINVIANGEIWTVQDAIQCQKISGCDDIMIGRGAVT 228 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGA 298 NP I + +++ V+ + + +E ++ + +G I + + L + A Sbjct: 229 NPSIALLIKKKLEERMSWQKTK-EVLSSYWLSMEPDVEAVSRVGRIKQWLHYLSREYEEA 287 Query: 299 RQWRRYLSENAHKAGADINVLEHALKLV 326 + + + ++ ++ + Sbjct: 288 QIDFQKIKRISNPKDFELIYFSELFSQI 315 >UniRef50_O67533 Probable tRNA-dihydrouridine synthase n=1 Tax=Aquifex aeolicus RepID=DUS_AQUAE Length = 316 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 70/323 (21%), Positives = 135/323 (41%), Gaps = 25/323 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG--KGDYLAYSEEEHPVA 67 G +APM +T R R L + YTE+++ ++ ++EEE P+ Sbjct: 5 KGEVILAPMASYTHSAFRRLCRRLGAD-RTYTELISAVGVLRNGIPMKLAYFTEEERPIH 63 Query: 68 LQLGGSDPAALAQC-AKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 +Q+ GS+P +AQ +A+ D I++N GC +V ++ L+ + VK Sbjct: 64 IQVFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPLMGEVVKE 123 Query: 127 MRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPK 183 + + IPV+ K R+G ++D E + + + + IHAR A Sbjct: 124 TVEALKPYGIPVSAKIRLGF-EKDEVERIVEELQK----AGVSLIAIHARTA-------- 170 Query: 184 ENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPG 241 + + R+ + K+ + + +G +KS + + + DGVMVGR A NP Sbjct: 171 KQGFSGKALWHRIKEAKK-VASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPW 229 Query: 242 ILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQW 301 I E + + + + +S+ I ++ + +G+P +R+ Sbjct: 230 IFKEFK-EKRDIEVGLKERMDFILEELSMMTEYMSREKACAEIKSQIVQILKGVPNSREL 288 Query: 302 RRYLSENAHKAGADINVLEHALK 324 + Y+ +A + +E A + Sbjct: 289 KTYI-VHAENCKELVKRIEEAKE 310 >UniRef50_Q9FH91 Gb|AAF51525.1 n=7 Tax=Viridiplantae RepID=Q9FH91_ARATH Length = 423 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 62/338 (18%), Positives = 128/338 (37%), Gaps = 29/338 (8%) Query: 3 EKTDVHWS----GRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAI---IHGKGD 55 E+ HW ++ VAPM+D ++ R + YT M+ + + Sbjct: 76 ERAWAHWKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQA-AYTPMLHSRIFTETEKYRNQ 134 Query: 56 YLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMG 115 +E+ P+ +Q +DP L + AK E D +++N+GCP + G +GA LM Sbjct: 135 EFTTCKEDRPLFVQFCANDPDTLLEAAKRVEPY-CDYVDINLGCPQRIARRGNYGAFLMD 193 Query: 116 NAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 N LV V+ + +++PV+ K RI + +D+ ++ + C + +H R Sbjct: 194 NLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYA-----KMLEDAGCSLLAVHGRTR 248 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVG 233 D+ + ++K + + NG ++ +E+ + ++GV+ Sbjct: 249 DEKDGKKFR------ADWSAIKEVKNAM-RIPVLANGNVRCIEDVDNCIKETGVEGVLSA 301 Query: 234 REAYQNPGILAAVDREIFGSSDTDADP----VAVVRAMYPYIERELSQGTYLGHITRHML 289 +NP A + + + + + Y++ I H+ Sbjct: 302 ETLLENPAAFAGFRTAEWAKDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVH 361 Query: 290 GLFQG-IPGARQWRRYLS-ENAHKAGADINVLEHALKL 325 + Q R L+ +N +++ +L Sbjct: 362 KMLGEWFRIHPQVREQLNAQNILTFEFLYGLVDQLREL 399 >UniRef50_B7GAU2 Predicted protein (Fragment) n=2 Tax=Bacillariophyta RepID=B7GAU2_PHATR Length = 330 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 119/331 (35%), Positives = 172/331 (51%), Gaps = 35/331 (10%) Query: 13 FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL---AYSEEEHPVALQ 69 S+APM+++TDRH R+ +RL+S TLLYTEMV A+ + + + E P LQ Sbjct: 1 LSLAPMMEYTDRHFRHLVRLVSNRTLLYTEMVAANALANERKNRYLAQGRVMPEGPSVLQ 60 Query: 70 LGGSDPAALAQCAKLAEAR------GYDEINLNVGCPSDRVQNGM-FGACLMGNAQLVAD 122 LGGSDP + Q A+ Y INLN GCPS +V FGA LM QLVA+ Sbjct: 61 LGGSDPEQMFQAAQTVLDMTARGHCDYTAINLNCGCPSPKVAGKGCFGAALMDEPQLVAE 120 Query: 123 CVKAMRDVVS--IPVTVKTRIG--------------IDDQDSYEFLCDFINTVSGKGECE 166 KA+ + +PVTVK RIG ID + Y L FI TV+ G Sbjct: 121 LTKALHEGTEGRLPVTVKCRIGTDSDQAFTRQAYAAIDPEQEYSKLRSFIETVASDGIVT 180 Query: 167 MFIIHARKA-WLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL- 224 F +HAR A SP +NR+IPPL Y V +L +++P T S+NGG++S+ +A+A Sbjct: 181 DFSVHARIAVLQKSFSPSDNRKIPPLKYDIVRRLVQEYPDFTFSLNGGVESISQAQAEFA 240 Query: 225 --QHMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLG 282 + GVM+GR +P A DR ++ + + + +++A + +RE G + Sbjct: 241 TSPGLKGVMIGRSWAADPWSFAMADRLLYKDENAPRNRLEILQAFGRHADREEELGDPV- 299 Query: 283 HITRHMLG----LFQGIPGARQWRRYLSENA 309 I R ++ LF G A+++R L+E A Sbjct: 300 KIRRFIVKAVTPLFTGEINAKRYRIALNEIA 330 >UniRef50_B8HFM3 TIM-barrel protein, nifR3 family n=4 Tax=Actinomycetales RepID=B8HFM3_ARTCA Length = 392 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 120/334 (35%), Gaps = 31/334 (9%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLA---YSEEE 63 + +APM T+ R R + EMVT+ A++ + L + ++E Sbjct: 22 LTVDTPVILAPMAGITNSAFRRLCREYGG-GMYVAEMVTSRALVERTPESLRIISHDDDE 80 Query: 64 HPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 ++QL G D + ++ D I+LN GCP +V G+ L L Sbjct: 81 KVRSVQLYGVDAGTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLFTA 140 Query: 123 CVKAMRDVV---SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 V+ +IP+T+K R GIDD ++ +H R A Sbjct: 141 IVQTAVREASKGNIPLTIKMRKGIDDDHLTYLD---AGRIARDSGVAAVALHGRTA---- 193 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQHM--DGVMVGREAY 237 D+ + +L+ P + + NG I S E+A ++ DGV+VGR Sbjct: 194 ----AQFYSGQADWSAIARLREALPDIPVLGNGDIWSAEDAVRMVRETGVDGVVVGRGCQ 249 Query: 238 QNPGILAAVDREIFGSSDTDAD-----PVAVVRAMYPYIERELSQGTYLGHITRHMLGLF 292 P + + GS V R +E +G L I +H+ F Sbjct: 250 GRPWLFGDLQAAFEGSDVRHRPNLRQVAEGVYRHAELMVETFGDEGKALREIRKHIAWYF 309 Query: 293 QGIPGARQWRRYLSENAHKAGADINVLEHALKLV 326 +G + R L+ + VL L + Sbjct: 310 KGYVVGGELRTRLALVTS-----LEVLRDTLAEL 338 >UniRef50_B0UHM8 TIM-barrel protein, nifR3 family n=6 Tax=Rhizobiales RepID=B0UHM8_METS4 Length = 358 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 129/319 (40%), Gaps = 22/319 (6%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEE--HPVALQLG 71 +AP+ TD H R R + + +EMV + G + +E E P +QL Sbjct: 31 LLAPLSGVTDLHLRRIARRCGASA-VVSEMVAAEDLARGSAEARLRAEGEGVRPHVVQLA 89 Query: 72 GSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVV 131 G DP +A+ A+LAEA G D I++N+GCP+ +V G G+ LM + A + A+R+ V Sbjct: 90 GCDPRWMAEGARLAEANGADVIDVNMGCPAKKVTGGEAGSALMRDLDHAARLLAAVREAV 149 Query: 132 SIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPL 191 ++PVTVK R+G DD + +H R ++ Sbjct: 150 AVPVTVKMRLGWDDASRNAPDL---ARRAEALGLSAVTVHGRT--------RQQFYAGRA 198 Query: 192 DYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNPGILAAVDRE 249 D+ + + + + NG + SL EA+A L VM+GR A P ++ AV Sbjct: 199 DWAAIRAVVEAVS-IPVVANGDVGSLAEARACLAESGAAAVMIGRAAVGRPWLVGAVAAG 257 Query: 250 IFGSSDTDADPVAVVR---AMYPYIERELSQGTYLGHITRHMLGLFQGIPG-ARQWRRYL 305 + G+ A Y + + H +H+ G A R L Sbjct: 258 LRGAPAPALTRAAQADLAGEHYEGLLALYGVAMGVRHARKHLAAYADHAGGLAAGERARL 317 Query: 306 SENAHKAGADINVLEHALK 324 A A + +L A Sbjct: 318 VTTTDPAEA-LALLRRAFA 335 >UniRef50_C6C170 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C170_DESAD Length = 323 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 64/331 (19%), Positives = 116/331 (35%), Gaps = 27/331 (8%) Query: 5 TDVHWSG-RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYS 60 + S + +AP+ ++D R R + TEMV+ + + G LA Sbjct: 2 KSLPISPDKPWLAPLAGYSDLPFRMLCRKRGC-AVACTEMVSVKGLKYDGKGTKALLATC 60 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E++P+ +QL G +P + GY +LN GCP +V G+ L + + Sbjct: 61 PEDNPLVVQLFGGEPQDYSDTMPQLIDEGYSFFDLNSGCPVKKVLKTGGGSALHLDPDRL 120 Query: 121 ADCVKAMRDVVS-IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 + AM V V VK R+G + + I +H R A Sbjct: 121 VETASAMVRVAGEGKVGVKIRLGFMNGEDNFLE---IAKRLEDTGVAWLTMHPRYA---- 173 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAY 237 + D+ ++ LK++ + + +G + + E+ + +DG+M R A Sbjct: 174 ----KQMFSGQADWSKLAVLKQNVS-IPVIGSGDLFTAEDGMECIKQTGIDGIMFARGAL 228 Query: 238 QNPGILAAVDREIFGSSDTDADPVAV---VRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 +P I A + + P + + I + +G Sbjct: 229 FDPEIFARYLKLLDDPKCATLPPFDLGKTMEEHINMTRDFDGSNRSFRKIRSILPRYAKG 288 Query: 295 IPGARQWRRYLSENAHKAGADINVLEHALKL 325 + G R R L +LE A ++ Sbjct: 289 MDGIRSIRTKL----TACEDWEELLEAAREV 315 >UniRef50_B3PD21 Dihydrouridine synthase family protein n=4 Tax=Proteobacteria RepID=B3PD21_CELJU Length = 321 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 73/332 (21%), Positives = 120/332 (36%), Gaps = 30/332 (9%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS---------EE 62 R +APM + H R L L TE + + Y+ Sbjct: 2 RIMLAPMEGVVEHHVRDILTRLGGLDGCVTEFIRVTDQKLPYKVFYKYAQELENHCQTPN 61 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 PV +QL GS P +A A+ G I+LN GCP+ V + GACL+ V Sbjct: 62 GTPVKVQLLGSKPEPMALNAQELVRYGAKAIDLNFGCPAKTVNSHEGGACLLRTPDRVYS 121 Query: 123 CVKAMRDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 +KA+RD V IPV+ K R+G +D+ SY + +HAR Sbjct: 122 IIKAVRDAVPRAIPVSAKIRLGFEDRTSYMENA----QAVEAAGADELTVHAR------- 170 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQ 238 K + PP + + +K + + NG I S+E+ + VM+GR Sbjct: 171 -SKADGYKPPAYWHYIADIKAAL-KIPVIANGEIWSVEDYLRCREQSQCADVMLGRGLLS 228 Query: 239 NPGILAAVDREIFGSSDTDADPVAVVRAMYPYIER---ELSQGTYLGHITRHMLGLFQGI 295 P + + + G V + ++ Y + + ++ L + Sbjct: 229 CPDLARQIKAYLAGEEYRPLTWGEVCQILFDYYRLTTPLYETRNCGNRVKQWLMYLSRQY 288 Query: 296 PGARQWRRYLSENAHKAGADINVLEHALKLVA 327 P A + + A + + A+ + A Sbjct: 289 PEANVFFEAVKRKTTPADIEACFI-QAMDVAA 319 >UniRef50_Q582L4 TRNA-dihydrouridine synthase 3, putative n=5 Tax=Trypanosomatidae RepID=Q582L4_9TRYP Length = 528 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 58/305 (19%), Positives = 102/305 (33%), Gaps = 27/305 (8%) Query: 1 MPEKT---DVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKG 54 M E++ +S + +AP+ + R + + + EM + + Sbjct: 153 MRERSAQHKALFSNKLVLAPLTTVGNLPFRRVCKEYGAD-ITVGEMAIVHNLNRLQKSEW 211 Query: 55 DYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARG--YDEINLNVGCPSDRVQNGMFGAC 112 L E LQ+ S P A+ E G YD +++N GCP D+V G Sbjct: 212 SLLRRHSSEDIFGLQIAVSRPHDAITWAQAVEESGFSYDFVDINCGCPVDKVVLSGCGCG 271 Query: 113 LMGNA-QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIH 171 L + D V+++ S PVT+K R+G D + L I IH Sbjct: 272 LWERKGNRLRDVVQSLVAHQSKPVTIKCRMGPD--EENPELHKHIADY-ETWGAAAVTIH 328 Query: 172 ARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH---MD 228 R + R ++ + L + NG I S E+ H + Sbjct: 329 GR--------SRRQRYTKLANWSYIDNCA-SLTSLPVIGNGDIFSCEDIVEHRAQSKNVS 379 Query: 229 GVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRH 287 M+GR A P I + + + ++R + + + + + R Sbjct: 380 SFMIGRGALVKPWIFEEIKTGRVW-DISSHERFEMLRRFCNFGLSHWGADERGVLNTRRF 438 Query: 288 MLGLF 292 + Sbjct: 439 LCEWL 443 >UniRef50_B8C4H3 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C4H3_THAPS Length = 333 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 65/319 (20%), Positives = 116/319 (36%), Gaps = 28/319 (8%) Query: 16 APMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAII------HGKGDYLAYSEEEHPVALQ 69 APM+D +D R R + +L +T M+ I ++ P+ Q Sbjct: 1 APMVDASDLPYRLLTRRYNT-SLCFTPMIHAKMFIDKPKYREKFWKIEGMPSQDRPLIAQ 59 Query: 70 LGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLM--GNAQLVADCVKAM 127 G D L Q K+ E D +++N GCP + + G +GA LM N + + V+ + Sbjct: 60 FCGHDKNVLLQAMKVLEPH-VDGVDINCGCPQNIAKRGRYGAFLMEEDNGDKIVEIVQHL 118 Query: 128 RDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENRE 187 +++PV+VK RI E + G M IH R + + + Sbjct: 119 TANLNVPVSVKLRILPTG---IEDSLALYKRLVDAG-AAMLTIHGRTRFQNKVD------ 168 Query: 188 IPPLDYPRVYQLKRDFPH-LTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILA 244 ++ + Q+ + + NG I +L+E + + +DGVM + P + Sbjct: 169 TGTANWDYIRQVVDLVGDRVPVIANGNICNLDEVRKCFEVTGVDGVMSSEGILEYPPLFT 228 Query: 245 AVDREIFGSSDTDADPVAVVRAMYPYIERE----LSQGTYLGHITRHMLGLFQG-IPGAR 299 + E G T + + + QG+ L I H+ + Sbjct: 229 ETNVESTGFKRTGPGRLQMAEDYLELCKEYPSEEGGQGSGLKCIRAHLHRFLHADLQVHT 288 Query: 300 QWRRYLSENAHKAGADINV 318 + R + + A V Sbjct: 289 KIRDAVVKTFTLEAAVEAV 307 >UniRef50_Q8SUV4 Putative uncharacterized protein ECU07_1610 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SUV4_ENCCU Length = 341 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 73/332 (21%), Positives = 127/332 (38%), Gaps = 43/332 (12%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG-----KGDYLAYSEEEH 64 F+VAPM+ ++ R + N + YTEMV + + G K + SE + Sbjct: 10 RPYFAVAPMVGNSEEAWRRLSKRHGAN-IFYTEMVHCDSFLRGSRNPVKNRWYTTSEGDR 68 Query: 65 PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 P+ +Q+ G+ P + + A + + D I++N GCP + G +GA L N +L + V Sbjct: 69 PLVVQICGNSPEVMLEAALIIQDH-CDAIDVNFGCPQKVARKGGYGAYLQENWKLTGEIV 127 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 K + +++PV K R+ + + E+ + + C + +H R G Sbjct: 128 KVLSSGLNVPVFCKIRVFGSIEKTVEYA-----KMIEEAGCSLLAVHGRTRDQRGA---- 178 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGI 242 + + + +K + + + NG I + + L+ DGVMVG NP I Sbjct: 179 --AMGFASWKHIRAIKENL-RIPVLSNGNIMTHHDVWRCLEYTGCDGVMVGEAHLHNPLI 235 Query: 243 LAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGI----PGA 298 DR + ++ + HI HM L PG Sbjct: 236 FTGEDR----------SCLEIIGEYLDICMEFPGSAD-VRHIKSHMFRLLYNYFSMNPGK 284 Query: 299 RQWRRYLSENAHKAGADINVLEHALKLVADKR 330 + + G+ E L LV + R Sbjct: 285 QP-------DLDSCGSVEKFYEFYLSLVEEMR 309 >UniRef50_B0S913 tRNA-dihydrouridine synthase n=7 Tax=Leptospira RepID=B0S913_LEPBA Length = 337 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 71/333 (21%), Positives = 128/333 (38%), Gaps = 29/333 (8%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YL 57 M +V G +++PM +D R + YTE V+T + G Sbjct: 1 MVRVGNVIIEGDVALSPMAGISDSPYRQITKRFGS-AFSYTEFVSTEQLKLGNAKSLDMF 59 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 + E E P+ Q+ GSD + +++A + D I+LN+GC +V + GA L+ N Sbjct: 60 RFVEMERPIVFQIFGSDLDTVVNASEIAAEQKPDIIDLNMGCSVSKVSHNGSGAGLLKNI 119 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 +L ++ +R+ ++PVT K R+G D V +H R Sbjct: 120 RLAGKMIEGIRNRTNLPVTAKIRLGWDANSLNYLE---TLKVLEDSGVSAISVHGRT--- 173 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGRE 235 K D+ + ++K ++ + NG ++S +EA + +D V++GR+ Sbjct: 174 -----KAMAYTGIADWNAIGEIKSRA-NVPIYGNGDVQSYKEALEKKKTYGVDLVLIGRK 227 Query: 236 AYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIEREL--SQGTYLGHITRHMLGLFQ 293 A NP + ++ F V+ + S L +H + + Sbjct: 228 AIGNPWVFGKTPKQFF----PWYQIKDVILEHLDLMLNFYPTSDDYALILFRKHFIKYIE 283 Query: 294 GIPGARQWRRYLSENAHKAGADINVLEHALKLV 326 I +R L A +N + L+ V Sbjct: 284 NIGFPEDTKRLLLSVAS-----VNEFKDTLEFV 311 >UniRef50_Q54ES7 tRNA-dihydrouridine synthase 4-like protein n=1 Tax=Dictyostelium discoideum RepID=Q54ES7_DICDI Length = 344 Score = 233 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 124/321 (38%), Gaps = 42/321 (13%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSEEEHPVALQL 70 APM+ ++ R ++ + + YT M+ + ++ + P+ +Q Sbjct: 58 IQAPMVRFSRLPFRMLVKKWGCD-ITYTPMIMAAEFNRSEAARDSDFTINKLDEPLIVQF 116 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDV 130 G ++ L A+ + I++N GCP V FGA L+ + + + D VK + + Sbjct: 117 GVNNAEELVSAAEKVKDY-CQGIDINCGCPQRWVMKEGFGANLLLHPERIYDMVKQINNR 175 Query: 131 VSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPP 190 V IP+++K R+ D +D+ E + + +H R + + P Sbjct: 176 VPIPISIKIRVQSDLKDTIELAKR-----AERIGVSWITVHGRTSAMK--------SSHP 222 Query: 191 LDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAVDR 248 +DY + +L +D L + NG + +L ++ + ++GVM R NP + D+ Sbjct: 223 VDYDAI-KLVKDNVTLPVFANGDVFTLSQSNEIREKTGVNGVMSARGLLTNPALFQGYDK 281 Query: 249 EIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSEN 308 P+ ++ + H RH++ + + + ++ Sbjct: 282 ----------TPIECIKDFINIYSEYGGLHPVIFH--RHLMYMLYEYHNKNE-KSEFNK- 327 Query: 309 AHKAGADINVLEHALKLVADK 329 ++ + + + DK Sbjct: 328 -------LSTISGIMDYINDK 341 >UniRef50_A7BE39 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BE39_9ACTO Length = 411 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 123/380 (32%), Gaps = 89/380 (23%) Query: 18 MLDWTDRHCRYFLRLLS------------------------------------------- 34 M TD R R++ Sbjct: 1 MAGVTDVPFRRLCRIMGESGLPDHLRPVGIPSWAAESGEGATASSPKAPGESSNEPRHVT 60 Query: 35 ------RNTLLYTEMVTTGAIIHGKGDYLAY---SEEEHPVALQLGGSDPAALAQCAKLA 85 L TEMVT+ A++ L E +LQL G +PA +A+ A + Sbjct: 61 IPRVDAPAGLYVTEMVTSRALVEENERTLEMVRPDPAERVRSLQLYGVNPAVMAKAATML 120 Query: 86 EARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVS---------IPV 135 R D I+LN GCP +V GA L L +D V A+ IPV Sbjct: 121 VERDLTDHIDLNFGCPVPKVTKKGGGAALPWKRDLFSDLVGAVVRACDEAGERAGREIPV 180 Query: 136 TVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPR 195 TVK RIGID + K +HAR + + Sbjct: 181 TVKIRIGIDSEHETATDAALNAQ---KLGAAALTLHART--------QNQHYAGHAHWDE 229 Query: 196 VYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAVDREIFGS 253 + +LK D + + NG + +A A L+ DG+ VGR A P I + G Sbjct: 230 IARLK-DLLDIPVFGNGDVFEAADALAMLEQTGCDGISVGRGAQGRPWIFRDIVAAYHGG 288 Query: 254 SDTD-ADPVAVVRAMYPY----IERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSEN 308 S VV + + + + + L + +H+ +G R LS Sbjct: 289 SIPPGPSLAEVVSVIECHAAWCVVDQGDEERALREMRKHIGWYLRGFAVGGPQRHALS-- 346 Query: 309 AHKAGADINVLEHALKLVAD 328 ++ L+ + +AD Sbjct: 347 ------MVSTLQELHERLAD 360 >UniRef50_A8PTG4 tRNA-dihydrouridine synthase 3 n=1 Tax=Malassezia globosa CBS 7966 RepID=DUS3_MALGO Length = 766 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 109/319 (34%), Gaps = 42/319 (13%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYS-- 60 EK + W G +AP+ + R + + EM + + G + Sbjct: 387 EKRRLQWKGDLYLAPLTTTGNLPFRRLCASFGSD-IHCGEMGMAESFLQGHASEWSLVRR 445 Query: 61 -EEEHPVALQLGGSDPAALAQCAKLAEAR---GYDEINLNVGCPSDRVQNGMFGACLMGN 116 E E Q+ G+ P L A++ G D +++N GCP D V N G+ L+ + Sbjct: 446 WEGERIFGTQVCGAKPELLVPTAEVLAREVGRGLDFVDVNCGCPIDLVYNKGAGSALLDH 505 Query: 117 AQLVADCVKAMRDVVS-IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKA 175 A + V+ M + + IP+T+K R G + + + +H R Sbjct: 506 ANKLGRIVRGMSEALGEIPLTIKLRTGTTSKPT---THKIFARAQTEWGVGGLSLHGR-- 560 Query: 176 WLSGLSPKENREIPPLDYPRVYQLKR-------------------DFPHLTMSINGGIKS 216 ++ R D+ + D + + NG + Sbjct: 561 ------SRKQRYKNDADWAYIRTCVDTLHDAVRTWNEEPQHADEPDMVPVPVYGNGDVYG 614 Query: 217 LEEAKAHLQ--HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IER 273 + HL+ H+DG M+ R A P I + E + + + ++R Y + Sbjct: 615 WRDYYDHLEHAHVDGTMIARGALIKPWIFTEIK-ERRDWDISSRERLDMIRQYASYGLTH 673 Query: 274 ELSQGTYLGHITRHMLGLF 292 S + R + + Sbjct: 674 WGSDTQGVNTTRRFLCEML 692 >UniRef50_C1E9S0 Predicted protein n=2 Tax=cellular organisms RepID=C1E9S0_9CHLO Length = 499 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 119/271 (43%), Positives = 163/271 (60%), Gaps = 19/271 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEEEHPV 66 S R SVAPML+ TD H R RL+SR L+TEMV A++H + LAY +EEHP+ Sbjct: 30 SHRISVAPMLECTDTHFRRVCRLVSRRAHLWTEMVNQDAVVHSWRSKPEMLAYGDEEHPL 89 Query: 67 ALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNG-----MFGACLMGNAQLV 120 +QLGG+ P LA A + YDEINLN GCPS+RV N FGA LM + V Sbjct: 90 TVQLGGASPERLALAATVCDAEYRYDEINLNCGCPSNRVVNKKDVATCFGAALMRDPTHV 149 Query: 121 ADCVKAMRDVVSIPVTVKTRIGI--------DDQDSYEFLCDFINTVSGKGECEMFIIHA 172 +C++ MR+ V +PVTVK R+G+ D DSY F+ +F++ V+ + FI+HA Sbjct: 150 GECLRRMREAVDVPVTVKHRLGVRPTEKSPDDSMDSYAFVSEFVDVVNQASGVKHFIVHA 209 Query: 173 RKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGV 230 R A LSGLS NR +PPL + V+ L DFP L ++NGGI+++++A HL+ + GV Sbjct: 210 RAAVLSGLSTTGNRTVPPLRHAEVHALADDFPSLGFTLNGGIETMDQAAEHLESGKLRGV 269 Query: 231 MVGREAYQNPGILAAVDREIFGSSDTDADPV 261 M+GR Y+NP +LA VD +G +A Sbjct: 270 MLGRAVYRNPAVLAEVDARFYGDEPREAFRE 300 >UniRef50_A7HK00 Dihydrouridine synthase DuS n=8 Tax=Thermotogaceae RepID=A7HK00_FERNB Length = 322 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 66/321 (20%), Positives = 122/321 (38%), Gaps = 33/321 (10%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHP 65 G +APM TD R +TEM++ ++I Y +E+ Sbjct: 7 LPGNIGLAPMAGVTDYPFRKLCLQHGAY-FAFTEMISAKSVIINVKINEIYFPRQDEKDR 65 Query: 66 VALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVK 125 V +QL GSD A L++ A + + +G ++LN GCP +V G+ L+ + V+ Sbjct: 66 VGVQLFGSDYAELSEAAAIVQEKGL-WVDLNAGCPVSKVIKKGAGSALLKDLGEFRKVVR 124 Query: 126 AMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 AMR V+ TVKTRIG + + + I + + + +H R A + Sbjct: 125 AMRSVL-KRFTVKTRIGWEKDE-----FEKIYNILLEENVDAVFVHGRTA--------KQ 170 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL 243 + + + + I+G I + E+ K ++ GV+V R + NP I Sbjct: 171 MYSGKATWK-----IYNPGFVPLYISGDIYTKEDIKNAMEQSGATGVIVARGSIGNPWIF 225 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRR 303 + + + + Y+ E + + + G + + GAR +R Sbjct: 226 SEI------GEPNCEQRLCTILKHLEYLYDEYKDYGAVV-FRKFVAGYTKNMLGARDFRD 278 Query: 304 YLSENAHKAGADINVLEHALK 324 + + + + Sbjct: 279 KVMKIRKLEELSSEFQKFFYE 299 >UniRef50_C8X0F5 Dihydrouridine synthase DuS n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X0F5_DESRD Length = 341 Score = 232 bits (593), Expect = 9e-60, Method: Composition-based stats. Identities = 72/325 (22%), Positives = 121/325 (37%), Gaps = 21/325 (6%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYS 60 D + RF ++PM+ T R L L +TEM + A++ + Sbjct: 15 IGDKSLTNRFLLSPMVGVTHVALRRLLHDFGGFGLHWTEMCSASAVLQEDPRISPVFRFH 74 Query: 61 EEE-HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQL 119 +E + Q+ GS+P +A A+ + G+ +++N+GC V+ GA L+ + Sbjct: 75 RDELATLVCQIMGSEPETMAAAARRIQDEGFFGVDINMGCCVAAVRQQGAGAALLRDISR 134 Query: 120 VADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 A V A+R V IP+ VK R G DQ K + I+H R A Sbjct: 135 AAAIVDAVRQAVDIPLFVKLRSGWTDQGPV---VVHAARACAKAGADALIVHPRLAPDRR 191 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAY 237 P + R+I + + L + NG + + ++A A L G+ +GR A Sbjct: 192 TRPPQWRDI---------RAVCEAVDLPVFGNGNVFTADDATAMLRQTGCQGIALGRMAA 242 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 P I A + +T V + M + +G L + M Sbjct: 243 ARPWIAAEWLGHFHPAPETYP---KVAQRMVELLWTSFPEGQALRLYRKFMNYFAANFAF 299 Query: 298 ARQWRRYLSENAHKAGADINVLEHA 322 + R L+ +A + H Sbjct: 300 GHRLRSDLTRSATPEDLYKEIAHHL 324 >UniRef50_Q1J2A4 Dihydrouridine synthase, DuS n=3 Tax=Deinococcus RepID=Q1J2A4_DEIGD Length = 333 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 66/329 (20%), Positives = 121/329 (36%), Gaps = 28/329 (8%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHP---- 65 +APM ++D R +EM++ ++ G +P Sbjct: 14 RPGAVLAPMAGYSDAPMRQLAAEQGAL-WTVSEMISARGLVLGGDSEKLTLGRPYPGEVG 72 Query: 66 VALQLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGMFGACLMGNAQLVADCV 124 +QL G++P LAQ AE+ ++LN+GCP +V G GACL+ ++ V Sbjct: 73 RVVQLFGAEPDVLAQAVARAESWFAPAALDLNMGCPVPKV-KGRGGACLLQTPEVAYTLV 131 Query: 125 KAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKE 184 +AMR ++ V+ K R+G D S E I + +H R + Sbjct: 132 RAMRSATTLDVSAKIRLGWDTDRSVE-----IAQGLAAAGAALITVHGRTSV-------- 178 Query: 185 NREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL-QHMDGVMVGREAYQNPGIL 243 R D+ + ++ + + +G +KS E+A+A L + VM+GR A NP + Sbjct: 179 QRYSGEADWDAIARVAASV-KVPVVGSGDVKSAEQARARLNTGVAAVMIGRGAVGNPWLF 237 Query: 244 AAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYL---GHITRHMLGLFQGIPGARQ 300 A+ +R ++ L + + + P + Sbjct: 238 RALASGDDVVPSAQERARTALRHAQLHVTFYGPDRFGLLSVRPLRKVLPHYL---PDHPE 294 Query: 301 WRRYLSENAHKAGADINVLEHALKLVADK 329 R L + A + + + + + Sbjct: 295 LRAALVQVNTVADVEQALAPLLVDALPPQ 323 >UniRef50_Q9JUP6 tRNA-dihydrouridine synthase C n=23 Tax=Neisseriaceae RepID=DUSC_NEIMA Length = 333 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 75/341 (21%), Positives = 132/341 (38%), Gaps = 31/341 (9%) Query: 3 EKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE 62 + T+ R +APM D R L + +E V +H + +L Y E Sbjct: 5 QTTEPKQKTRIILAPMQGLVDDVMRDLLTRIGGYDECVSEFVRITHTVHSRATWLKYVPE 64 Query: 63 ---------EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACL 113 P +QL GSD +A A A G D+I+LN GCP+ V GA L Sbjct: 65 IANGNKTFSGTPCTVQLLGSDADNMAANALEAVRFGADKIDLNFGCPAPTVNRHKGGAIL 124 Query: 114 MGNAQLVADCVKAMRDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIH 171 + +L+ VK +R+ + IP+T K R+G +D+ + ++ G C +H Sbjct: 125 LKEPELIFHIVKTLRERLPAHIPLTAKMRLGYEDKSP---ALECACAIAEGGAC-GLTVH 180 Query: 172 ARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEA--KAHLQHMDG 229 AR K PP + + ++ RD + ++ NG + SL++ + + Sbjct: 181 ART--------KAEGYEPPAHWEWIRKI-RDSVDIPVTANGDVFSLQDYIGIKTISGCNS 231 Query: 230 VMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIEREL----SQGTYLGHIT 285 VM+GR A P + + + G D D V + + + E L + + + Sbjct: 232 VMLGRGAVIRPDLARQIKQYENGGPVKDTDFAEVSKWIRQFFELCLTKEANNKYPIARLK 291 Query: 286 RHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKLV 326 + + + + A+ + A +L + Sbjct: 292 QWLGMMKKTFDPAQTLFDRVRTVKD-ADEVRRILNAFEHEI 331 >UniRef50_Q6M9N8 Putative uncharacterized protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6M9N8_PARUW Length = 297 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 67/289 (23%), Positives = 116/289 (40%), Gaps = 24/289 (8%) Query: 43 MVTTGAIIHGK---GDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGC 99 MV A+I L Y+ HP+ QL GS P+ Q AK+ E G+D ++LN GC Sbjct: 1 MVKMDALIRHDPHTYHILDYAANMHPIGGQLCGSKPSIAGQAAKIIEELGFDIVDLNCGC 60 Query: 100 PSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTV 159 P D++ G+ L+ +L+ + V M V IPVTVK R G D+Q + + I + Sbjct: 61 PVDKITKDGSGSGLLKTPELIGEIVCNMVSAVKIPVTVKIRAGWDEQ---QIQVENIVQI 117 Query: 160 SGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEE 219 + + IH R ++ P ++ + + K + + NG + Sbjct: 118 VEQAGAQAICIHGRT--------RQQGYRGPANWEYIKRGKLAAKSIKIIGNGDVLDGPS 169 Query: 220 AKAHL--QHMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIE---RE 274 A D V+V R P I+ + R + G + +A+Y + Sbjct: 170 AAKMFCETGCDAVLVARGTLGQPWIVQDILRYLEGKTAICHSLEDCRQALYQHFLETLHY 229 Query: 275 LSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHAL 323 + R + G R +R +S+ +D+ V+++ + Sbjct: 230 HPDQRVCIDMRRVGCWYLKKSSGTRLFRELISKA-----SDVEVIKNLI 273 >UniRef50_B2KES4 Dihydrouridine synthase DuS n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KES4_ELUMP Length = 318 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 82/313 (26%), Positives = 134/313 (42%), Gaps = 24/313 (7%) Query: 10 SGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGD---YLAYSEEEHPV 66 +APM TD R ++ EMV+ A+ + LA ++EHPV Sbjct: 16 KNNLMLAPMAGITDTPFRIHCLNNGA-GIVCAEMVSAKAVEYDNKKSVKMLAVDKKEHPV 74 Query: 67 ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKA 126 ++Q+ G D +++ AK AEA G D I++N GCP ++ G L+ + +L+A V A Sbjct: 75 SMQIFGGDAESISIAAKAAEAAGADIIDINAGCPVKKINRAGAGCVLIKDEKLLASIVNA 134 Query: 127 MRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENR 186 + VSIPVT+KTRIG+ D F D I ++ I+HAR A N Sbjct: 135 AVNSVSIPVTLKTRIGLTAGD---FKGDKIAKLAENEGAAAVIMHARYAG--------NV 183 Query: 187 EIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ-HMDGVMVGREAYQNPGILAA 245 P D + ++ + + NGGI + A + + G+MVGR A N I + Sbjct: 184 HGGPADLEALAKVVSAV-KIPVIGNGGIVDVNTADKMFETGVRGIMVGRGAIGNINIFKS 242 Query: 246 VDREIFGSSDTDADPVAVVRAMYPYIER---ELSQGTYLGHITRHMLGLFQGIPGARQWR 302 + D + +P V+ + I++ + + + + +G P A + R Sbjct: 243 I----INGCDIELNPKENVKIFFNLIKQNVNFYGEKNGIARSRKTVGFWIKGFPMAGEIR 298 Query: 303 RYLSENAHKAGAD 315 + A Sbjct: 299 GEFVKLNTLAAVQ 311 >UniRef50_A8F480 Dihydrouridine synthase DuS n=1 Tax=Thermotoga lettingae TMO RepID=A8F480_THELT Length = 305 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 61/313 (19%), Positives = 120/313 (38%), Gaps = 31/313 (9%) Query: 18 MLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHP-VALQLGGSDPA 76 M T+R R +TEM++ +++ ++ P VA+QL G+DP Sbjct: 1 MAGITNRAFRKICTFWGA-QFSFTEMISAESVVRNFKTVQRMLPKDEPNVAVQLFGNDPK 59 Query: 77 ALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVT 136 LAQ AK+ E I++N CP +V G L+ + + + + +++ V PVT Sbjct: 60 TLAQAAKIVEPY-AAWIDINAACPVKKVIKKNSGGALLNDLERLEKIIGSVKSSVQKPVT 118 Query: 137 VKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRV 196 VK RIG + + D I K + +H R + + Sbjct: 119 VKIRIGFEKN-----ILDQIVHSCIKAGADGIEVHGRTVV--------QKYSGKAFWD-- 163 Query: 197 YQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAVDREIFGSS 254 LK ++ +++G I E+ L+ + ++ R A + P I A + ++ Sbjct: 164 --LKLSQYGISTAVSGDIFEAEDFHKALEMSGANSALIARGALRKPWIFAQITQKRT--- 218 Query: 255 DTDADPVAVVRAMYPYIERELSQ--GTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKA 312 + +++ ++ + + + + G G+ GAR++R + +K Sbjct: 219 ---PKITEIKETFTKHLKMQIEDEGERSIYKMRQFVAGYTHGMRGAREFREKFMKL-NKP 274 Query: 313 GADINVLEHALKL 325 +E Sbjct: 275 EDMEKAIEEFFNS 287 >UniRef50_Q4DCG2 Putative uncharacterized protein n=2 Tax=Trypanosoma cruzi RepID=Q4DCG2_TRYCR Length = 529 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 106/299 (35%), Gaps = 23/299 (7%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYS 60 + + + +AP+ + R + + + + M + G+ L Sbjct: 163 RRRALFKNKLVLAPLTTVGNLPFRRVCKSYGAD-ITVSSMSLVHNLNRLQKGEWSLLRRH 221 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEA--RGYDEINLNVGCPSDRVQNGMFGACLMGNAQ 118 E E LQ+ S P + AK EA YD I++N GCP + + G L Sbjct: 222 ESEDVFGLQIAVSQPQSAQTWAKAIEASGYSYDFIDINCGCPVQMIMSAGCGCGLWERRD 281 Query: 119 -LVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 + D V ++ S PV++K RIG S L + I G G + IH R Sbjct: 282 NRLRDIVSSLVQHQSKPVSIKCRIGAGANSS-ASLHEKIGDYEGWG-ADAVTIHGRF--- 336 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ---HMDGVMVGR 234 + R ++ + L + NG I S E+ H + H+ M+GR Sbjct: 337 -----RAQRYTKLANWEYIDSCAAR-TSLPVIGNGDIFSYEDIIDHRERYPHVSSYMIGR 390 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGLF 292 A P I + +E + + ++R+ Y + S + R + Sbjct: 391 GALIKPWIFEEIKQE-QPRDISSQERFEMLRSFCNYGLSHWGSDERGVLTTRRFLCEWL 448 >UniRef50_Q08111 Probable tRNA-dihydrouridine synthase n=17 Tax=Alphaproteobacteria RepID=DUS_RHOCA Length = 324 Score = 230 bits (586), Expect = 6e-59, Method: Composition-based stats. Identities = 78/327 (23%), Positives = 128/327 (39%), Gaps = 26/327 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEH-- 64 + +APM TD R + L+ +EMV +G ++ K A ++ E Sbjct: 8 LRLDPPVLLAPMAGITDLPFRRMVARFGA-GLVVSEMVASGEMLTAKPSVRAKAQAELTA 66 Query: 65 --PVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 P ++QL G + A +A+ AK+ G + I++N+GCP+ +V G+ GA LM N Sbjct: 67 GLPTSVQLAGREAAPMAEAAKIVADMGAEIIDINMGCPAKKVTGGLSGAALMRNPDHALR 126 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 ++A+ V +PVT+K R+G D+ + I + +M +IH R Sbjct: 127 LIEAVVGAVDLPVTLKMRLGWDED---QLNAAEIAARAEAAGVKMIVIHGRTRM------ 177 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNP 240 D+ + ++ NG I A+ L GVMVGR A P Sbjct: 178 --QFYTGAADWRAIAAVRAAVSVPV-VANGDITDAASARRALDQSGAAGVMVGRGAQGAP 234 Query: 241 GILAAVDREIFGSSDTDA----DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIP 296 LA + +FG +D + V Y I + L +H+ Sbjct: 235 WRLAQIAAALFGKADPKLPSGSEFSDFVSEHYEAILSFYGRDLGLRIARKHLGWY--AEA 292 Query: 297 GARQWRRYLSENAHKAGADINVLEHAL 323 A R + A A + ++ A Sbjct: 293 AAAPLRAEMMRATDPA-ATLALIRSAF 318 >UniRef50_B8GW86 tRNA-dihydrouridine synthase n=7 Tax=Alphaproteobacteria RepID=B8GW86_CAUCN Length = 335 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 76/299 (25%), Positives = 120/299 (40%), Gaps = 22/299 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSE--EEH 64 V GR +APM +D R L + TEMV + G+ D + + E Sbjct: 10 VEVPGRVWIAPMTGVSDLPFRETASALGAPYVA-TEMVASAEFAKGRPDVVRRAAVGEGL 68 Query: 65 PV-ALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMF-GACLMGNAQLVAD 122 P+ +QL G D +AQ A++A+ G + I+LN GCP+ V G G+ LM L Sbjct: 69 PLTVIQLVGRDVDFMAQGARMAQEAGAEIIDLNFGCPAKEVAAGAACGSALMREPDLAEA 128 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 V A + V +PVTVK R+G D I + + +H R Sbjct: 129 LVAAAVEAVDVPVTVKMRLGWDIDCLNA---PDIARRAEAAGAKAVTVHGRT-------- 177 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNP 240 + D+ V +K+ + + +NG I E A+ L+ DGVM+GR Y P Sbjct: 178 RNQFYKGVADWTAVAAVKQAVS-VPVLVNGDIVDGETARQALEQSGADGVMIGRGVYGRP 236 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIER---ELSQGTYLGHITRHMLGLFQGIP 296 I A++ + G + + + + R + L +H+ + P Sbjct: 237 WIAGAIEAALEGRGFQEPEAEERLAIAITHFRRSLSFYGERLGLKMFRKHLASYIEAAP 295 >UniRef50_Q5KP54 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5KP54_CRYNE Length = 610 Score = 229 bits (585), Expect = 9e-59, Method: Composition-based stats. Identities = 63/366 (17%), Positives = 118/366 (32%), Gaps = 69/366 (18%) Query: 9 WSGRFSVAPMLDWTDRHCRYF------------------------LRLLSRNTLLYTEMV 44 S +F VAPM+D ++ R +R + YT M+ Sbjct: 50 GSPKFVVAPMVDQSELAWRLLSRSPLPPALAGPSETVTTPQGKAYIRHPGGAHVCYTPMI 109 Query: 45 TTGAIIHGKGD---------------------YLAYSEEEHPVALQLGGSDPAALAQCAK 83 + KG+ + P+ +Q +DP L AK Sbjct: 110 HAKVFVDAKGEGGRNGDGQFCLSLDEEGGEGTIGGVEGGDRPLIVQFCANDPDILLAAAK 169 Query: 84 LAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGI 143 E D +++N GCP + G +G+ L +L+ + + + +S+PVT K RI Sbjct: 170 KVE-HRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLISTLHENLSVPVTAKFRIFP 228 Query: 144 DDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDF 203 D + + + ++ H R + G + D+ + ++K+ Sbjct: 229 DLDKTIAYA-----RMMEAAGAQILTCHGRTREMKG------QNTGLADWEYIREVKKAV 277 Query: 204 PHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPV 261 + + NG I E+ ++ DGVM NP I + T Sbjct: 278 -KVPVFANGNILYREDVDRCMEVTGCDGVMTAEGNLSNPAIFMPPEHPHAHPPITV---- 332 Query: 262 AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGAR-QWRRYLSEN--AHKAGADINV 318 + I L T I H+ L + + + R ++ + + Sbjct: 333 -LAHRYLD-IVEALDTPTAGSAIKAHLFRLLKPVLDTDEELRVQIATCRWSDGMDGFREI 390 Query: 319 LEHALK 324 + + Sbjct: 391 IRDIER 396 >UniRef50_D1U4K9 Dihydrouridine synthase DuS n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4K9_9DELT Length = 339 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 67/327 (20%), Positives = 110/327 (33%), Gaps = 31/327 (9%) Query: 14 SVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYLAYSEEEHPVALQL 70 +AP+ ++D R ++ + +EMV+ + G +A E+ P+ LQL Sbjct: 12 WLAPLAGYSDLPFRLLVKRHGC-AVACSEMVSVKGMTFGNEGTQRLIATCPEDDPMVLQL 70 Query: 71 GGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRD- 129 G+DP GY +LN GCP +V G LM + + M + Sbjct: 71 FGADPDLFGPVMDWLVDLGYRNFDLNAGCPVRKVLKSGSGVKLMEDPDTLVRIASVMVER 130 Query: 130 ----VVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKEN 185 V VK R+G D + + + G +H R Sbjct: 131 ATAHARGGQVGVKFRLGFDKGNDTY--LELARRLEDAG-VHWVTLHPRYG--------RQ 179 Query: 186 REIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGIL 243 D+ ++ LKR + + +G + + E+ ++ +D VM R A +P I Sbjct: 180 MFAGQADWSKLGLLKRAVS-IPVVASGDLFTAEDGVRCVEETGVDAVMFARGALYDPAIF 238 Query: 244 AAVDREIFGSSDTDA---DPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 + G +VR G I + +G+ G R Sbjct: 239 DRYRTLLAGGQPEPRSGESLARIVREHIRLTREFEGDGRSFRKIRSIIPRYAKGLRGIRA 298 Query: 301 WRRYLSENAHKAGADINVLEHALKLVA 327 R L E D LE A +A Sbjct: 299 LRGSLLEC-----RDWEALEEAAATIA 320 >UniRef50_C5TM05 tRNA-dihydrouridine synthase C n=5 Tax=Neisseriaceae RepID=C5TM05_NEIFL Length = 321 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 72/332 (21%), Positives = 128/332 (38%), Gaps = 31/332 (9%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEE--------- 62 + +APM D R L + +E V +H + +L Y E Sbjct: 2 QLILAPMQGLVDDVMRDLLTRIGGFDECVSEFVRITHTVHSRATWLKYVPEIAHANRTTA 61 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 P +QL GSD +A A A G D+I+LN GCP+ V GA L+ L+ Sbjct: 62 GTPCTVQLLGSDAENMAVNALEAVRFGADKIDLNFGCPAPTVNKHKGGAVLLKEPDLIYH 121 Query: 123 CVKAMRDVVS--IPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 V +R + IP+T K R+G +D+ L + G +HAR Sbjct: 122 IVHTLRQRLPQHIPLTAKMRLGYEDKS----LALECASAIENGGACALTVHART------ 171 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAH--LQHMDGVMVGREAYQ 238 K PP + V ++ RD ++ ++ NG + +L++ + + VM+GR A Sbjct: 172 --KVEGYEPPAHWEWVRKI-RDAVNIPVTANGDVFNLQDYLDIKSVSGCNSVMLGRGAVI 228 Query: 239 NPGILAAVDREIFGSSDTDADPVA----VVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 P + + + G + D D +V+ + +E S + + + + + + Sbjct: 229 RPDLARQIKQYENGETVKDTDFAEVSSWIVQFFDLCLAKEASNKYPVSRLKQWLGMMKKE 288 Query: 295 IPGARQWRRYLSENAHKAGADINVLEHALKLV 326 A+ + +A +L + + Sbjct: 289 FEQAQVLFDRI-RAIKEADEVKQILLSFEQEM 319 >UniRef50_B0ESC7 tRNA-dihydrouridine synthase, putative n=2 Tax=Entamoeba RepID=B0ESC7_ENTDI Length = 515 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 55/307 (17%), Positives = 108/307 (35%), Gaps = 24/307 (7%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYL--- 57 +PEK + G+ + + + + R ++ + + TEM+ +++ GK Sbjct: 160 VPEKKILDLKGKLILPSLCTFGNLPFRKAVKRFGCD-VTMTEMIMAESLVEGKTSEWALV 218 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNA 117 E +QL + A+ ++ + D LN CP D V GA L+ Sbjct: 219 KRDPSEDIFGIQLCVGNSLLAAKACQVLNSVDCDFYELNCACPIDYVYKKGMGAQLIERP 278 Query: 118 QLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWL 177 + + + AMR V PV +K R G S + D + M IH R Sbjct: 279 KRIESLLHAMRSVTERPVAIKVRTG----KSSNTIQDVLLPNCANYGAAMVSIHGRT--- 331 Query: 178 SGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ-HMDGVMVGREA 236 ++ R D+ + Q + G I ++ + L+ + V +GR A Sbjct: 332 -----RDQRYTKSADWDFIKQ-ATTITQCPVIGVGDIYGYKDYQKALECGVATVAIGRGA 385 Query: 237 YQNPGILAAVDREIFGSSDTDADPVAVVRAM-YPYIERELSQGTYLGHIT----RHMLGL 291 P I + + + ++ + ++R + S + H+ + Sbjct: 386 LIKPWIYTEIKEKRDW-DISSSERLDILRQYALDGLSHWGSDAQGISKTREFMCHHLTFM 444 Query: 292 FQGIPGA 298 + +P Sbjct: 445 TRYVPVH 451 >UniRef50_D0MWM4 tRNA-dihydrouridine synthase 3 n=1 Tax=Phytophthora infestans T30-4 RepID=D0MWM4_PHYIN Length = 681 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 54/339 (15%), Positives = 113/339 (33%), Gaps = 58/339 (17%) Query: 1 MPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGK---GDYL 57 +PE+ V + + +AP+ + R ++ + + EM ++ + L Sbjct: 279 LPERKPVDFKRKIYIAPLTTVGNLPFRRLMKQTGAD-ITCGEMAMATNLLKAQQSEWALL 337 Query: 58 AYSEEEHPVALQLGGSDPAALAQCAKLA-EARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 + E +QL GS + + +L D +++N+GCP D V G+ LM Sbjct: 338 RRHKSEDVFGVQLAGSFSDQMTRVCELLTRETDIDFVDINMGCPIDIVCRAGAGSALMTR 397 Query: 117 AQLVADCVK------------AMRDVVSIP-VTVKTRIGIDDQDSYE--FLCDFIN---- 157 + + V +V+ P +TVK R G ++ + Sbjct: 398 PPRLLEVVSGALTGLELGTRMRTGGIVNTPGLTVKLRTGWSEKQPTAHKLIPKLQAVRAS 457 Query: 158 -------------TVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRD-- 202 + + +H R + R D+ ++Q Sbjct: 458 QAYVNSAVVTADFKLRATQSIDAITVHGR--------SRLQRYTKHADWDYIFQCSDAQK 509 Query: 203 -------FPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQNPGILAAVDREIFGS 253 ++ G + S EE HLQ+ +D M+ R A P + + Sbjct: 510 GSIDDKPLSNIPFVGGGDVLSYEEFDEHLQNGKLDTCMLARGALIKPWLPTEIKERRHW- 568 Query: 254 SDTDADPVAVVRAMYPY-IERELSQGTYLGHITRHMLGL 291 + ++ + +++ + +E S + R++L Sbjct: 569 DISASERLDLLKDFVRFGLEHWGSDQKGVNRTRRYLLEW 607 >UniRef50_B8FH09 Dihydrouridine synthase DuS n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH09_DESAA Length = 328 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 78/325 (24%), Positives = 120/325 (36%), Gaps = 24/325 (7%) Query: 8 HWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY-----LAYSEE 62 + R +APM T R + L LLYT M ++ H E Sbjct: 7 TIANRLILAPMAGLTHIAFREVMALYGGYGLLYTGMAGAKSVPHENPKVSTVFSWREKEL 66 Query: 63 EHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVAD 122 +H Q+ GS P +A+ A+ EA G+ +++N GC + + GA L+ L A Sbjct: 67 DH-TVCQIFGSVPETMAKAAERIEAEGFFGVDINCGCSARAICRFDSGAALLAKPDLAAQ 125 Query: 123 CVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSP 182 V+A+R V+IPV VK R G D ++ + + + I H R A P Sbjct: 126 VVRAVRKAVNIPVIVKFRTGWKDDPAHAVS---MARLFCDEGADALIFHPRVAPDLRTRP 182 Query: 183 KENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAYQNP 240 + I L +D + + NG + SL++A L DGV +GR A P Sbjct: 183 PKWEYIG---------LVKDAVKVPVFGNGNVISLDDAAKMLSMSGCDGVALGRIALAQP 233 Query: 241 GILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQ 300 I+A + G D AM + + T + Sbjct: 234 WIMAQWSQ---GMKPALEDYKTAGAAMASFCAKRFEPRTAFLRFMKFSPYYCANFQFGHA 290 Query: 301 WRRYLSENAHKAGADINVLEHALKL 325 + L A + I VLE+ + Sbjct: 291 LHKRLF-AAKEIDNIIPVLENFFQS 314 >UniRef50_C1ZGV0 tRNA-dihydrouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGV0_PLALI Length = 322 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 74/334 (22%), Positives = 137/334 (41%), Gaps = 23/334 (6%) Query: 4 KTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY---LAYS 60 ++ + ++APM + T R + +L+ +E + + L+ + Sbjct: 3 IGNISLAHGLTLAPMEEHTSLPFRLICKQQGA-SLVCSERIDAKDVAERDKRAIKLLSTT 61 Query: 61 EEEHPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E P Q+ G+D A + + A++ E G+ ++LN CP R+ G LMG Q + Sbjct: 62 SAERPAVGQISGNDAAQIGEAARVIEELGFSMVDLNFECPIRRLVGRGEGGALMGQPQRI 121 Query: 121 ADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGL 180 A+ V A + VSIPVTVK R G + + V G I+HAR Sbjct: 122 AELVAAAKQAVSIPVTVKLRTGPKAGEDTA--VETAQRVEQAGG-AAIILHARSV----- 173 Query: 181 SPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQ 238 E + D+ V ++K + + +GG+++ ++A + L+ DGV +GR Sbjct: 174 ---EQAYLGGPDWQHVTRVKEAVS-IPVLGSGGVRTPQDAISFLESSGADGVAIGRGCLG 229 Query: 239 NPGILAAVDREIFGS----SDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 NP I +FGS + A+ V+ A+ + S + R + Sbjct: 230 NPWIFQQARTLLFGSREIIEPSPAERGKVLLALVEHEFEFYSAHLAQKRLARTACYFAKF 289 Query: 295 IPGARQWRRYLSENAHKAGADINVLEHALKLVAD 328 +P ++++ + + A ++ + VA Sbjct: 290 LPDFAEFKKEIHAIKNLAQFR-TLVREWFRPVAR 322 >UniRef50_UPI0001C3129C dihydrouridine synthase DuS n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3129C Length = 333 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 70/324 (21%), Positives = 122/324 (37%), Gaps = 25/324 (7%) Query: 7 VHWSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDY----LAYSEE 62 V R +AP+ + R + L +EMV++ AI +G L + Sbjct: 14 VEIPNRVVLAPLAGIGNWFVRLQAKRYGA-GLAVSEMVSSHAIHYGNEKTCTELLRVHPD 72 Query: 63 E------HPVALQLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGN 116 E PV++QL G+DP + A A G + I+LN+GCP +V GA L+ + Sbjct: 73 EWRAGAGGPVSIQLFGNDPDIMRSAAARAAETGANLIDLNMGCPVPKVCKTGAGAALVKD 132 Query: 117 AQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAW 176 L + +A + +PVTVK R G+ D + + IH R A Sbjct: 133 PDLAVEIARAAAEGSGLPVTVKLRPGLRPGDRNG--IELAYRLVADAGIAGLCIHPRHA- 189 Query: 177 LSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGR 234 + DY +L + P + + I+GG++S E + + + V++ R Sbjct: 190 -------SQQHSGRPDYELAKRLVEELP-VPVLISGGLRSAELVREVFEFTGAEAVLLAR 241 Query: 235 EAYQNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQG 294 + NP + V + G T + + V + L +G ++ + Sbjct: 242 GSLGNPWLFEQVLGDRVGEP-TREEILTEVDWILDRAVEHLGEGRAARYLRKFYPWYVTR 300 Query: 295 IPGARQWRRYLSENAHKAGADINV 318 + + + L A A Sbjct: 301 LGEGAELQDRLQRTETVAEARAAF 324 >UniRef50_Q9ZLB6 Probable tRNA-dihydrouridine synthase n=23 Tax=Epsilonproteobacteria RepID=DUS_HELPJ Length = 328 Score = 227 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 124/327 (37%), Gaps = 27/327 (8%) Query: 7 VHWSGR--FSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIH---GKGDYLAYSE 61 + + + +AP+ +TD R ++ + + +EMV++ ++++ L S Sbjct: 1 MDFKNKKWLFLAPLAGYTDLPFRSVVKKFGVD-VTTSEMVSSHSLVYAFDKTSKMLEKSP 59 Query: 62 EEHPVALQLGGSDPAALAQCAKLAEARG-YDEINLNVGCPSDRVQNGMFGACLMGNAQLV 120 E Q+ GS + + + + A I+ N GCP+ +V N G+ L+ + + Sbjct: 60 LEDHFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHL 119 Query: 121 ADCVKAMRDVVSIPVT-VKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSG 179 + +K +R+ + +T VK R+G + + E + ++H R Sbjct: 120 VEILKVIRENTNKKITSVKVRLGFEKKIPKEIAHAL-----NDAPVDYVVVHGRTRSDRY 174 Query: 180 LSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHL--QHMDGVMVGREAY 237 K +DY + +K+ + NG I S+++A L DG+M+GR Sbjct: 175 QKDK-------IDYESIALMKKILKK-PVIANGEIDSVKKAFEVLQITQADGLMIGRATL 226 Query: 238 QNPGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPG 297 + P I + + +V + + + +++ +G Sbjct: 227 RAPWIFWQIRNN--TTELPAVVKKDLVLEHFDKMVEFYGDR-GVIMFRKNLHAYAKGEMQ 283 Query: 298 ARQWRRYLSENAHKAGADINVLEHALK 324 A +R ++ + + +E Sbjct: 284 ASAFRNCVNTL-TEIKSMRESIEEFFN 309 >UniRef50_A8QBG9 PP3111 protein, putative n=1 Tax=Brugia malayi RepID=A8QBG9_BRUMA Length = 513 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 56/310 (18%), Positives = 111/310 (35%), Gaps = 33/310 (10%) Query: 12 RFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEEEHPVAL 68 R+ VAPM+D ++ R LR + L ++ M+ + + L+ ++ P+ + Sbjct: 61 RYVVAPMVDQSELAFRMMLRKHGAH-LCFSPMIHAQLFVTDATYRRTALSTCLDDRPLVV 119 Query: 69 QLGGSDPAALAQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMR 128 Q +DP L +L E+ D ++LN+GCP + G +GA L + +L+ + + + Sbjct: 120 QFCANDPVILLNACQLVESF-CDGVDLNLGCPQLIAKRGHYGAYLQEDLKLICEMITLLH 178 Query: 129 DVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREI 188 +P++ K RI D ++ + + K M +H R G Sbjct: 179 SHSRLPLSCKIRILQDINETVAYARALV-----KAGACMLTVHGRTREQRG------PNT 227 Query: 189 PPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQ--HMDGVMVGREAYQNPGILAAV 246 D+ + + + + NG I+ + L+ +M NP + Sbjct: 228 GLADWYAMRAVVSAV-DVPVLANGNIQLPGDVDRCLEITGASAIMSAEGILSNPYLFEKR 286 Query: 247 DREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF-QGIPGARQWRRYL 305 + + R + ER S + + H+ + + R L Sbjct: 287 HEVNWTA----------AREYLDFAERYESTTSAV---RAHLFRICHHSLLEYSDLRERL 333 Query: 306 SENAHKAGAD 315 S Sbjct: 334 SYVCTTEDFR 343 >UniRef50_D2VPF2 Predicted protein n=2 Tax=Naegleria gruberi RepID=D2VPF2_NAEGR Length = 450 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 128/335 (38%), Gaps = 39/335 (11%) Query: 9 WSGRFSVAPMLDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHG---KGDYLAYSEE-EH 64 S ++ VAPM+D ++ R + TL YT M + + + ++ + E Sbjct: 101 GSPKYVVAPMVDQSEMAFRLLSKEYGA-TLAYTPMFHGMYFAYHKKYRARFYQFNPDLEG 159 Query: 65 PVALQLGGSDPAALAQCAKLA---EARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVA 121 PV Q +DP QC K + I+LN+GCP + G +G+ LM + Q V Sbjct: 160 PVFAQFCTNDPETFVQCGKRVWDLSKQKISAIDLNLGCPQRIARRGRYGSFLMEDLQTVH 219 Query: 122 DCVKAMRDVVSIPVTVKTRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLS 181 + + +PVT K RI D E +++ TV G ++ +H R G + Sbjct: 220 SIINKAHLELPMPVTAKIRIFED----LELTMNYVKTVVDAG-AQVLCVHGRTREQKGAN 274 Query: 182 PKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKSLEEAKAHLQH--MDGVMVGREAYQN 239 D+ + ++ FP + M NG I++ ++ + L++ +D VM G +N Sbjct: 275 QNY------ADWTVIRAIREQFPQIPMIANGNIRTFQDVQDCLEYTRVDAVMSGEGLLEN 328 Query: 240 PGILAAVDREIFGSSDTDADPVAVVRAMYPYIERELSQGTYLGHITRHMLGLF-QGIPGA 298 P + P+ + + +I RH+ + + IP Sbjct: 329 PALFNG---------GQFVHPLDISDKYVNICKTHFPPDH--NNIKRHLFRILDKYIPED 377 Query: 299 R-QWRRYLSENA-----HKAGADINVLEHALKLVA 327 R R L + + + +E+ Sbjct: 378 RSDLRGILGKASLWEHYREFVDYARKIENEFDFKE 412 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.154 0.441 Lambda K H 0.267 0.0475 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,006,409,405 Number of Sequences: 3077464 Number of extensions: 85218641 Number of successful extensions: 252986 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1290 Number of HSP's successfully gapped in prelim test: 1027 Number of HSP's that attempted gapping in prelim test: 244737 Number of HSP's gapped (non-prelim): 2857 length of query: 330 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 201 effective length of database: 643,403,500 effective search space: 129324103500 effective search space used: 129324103500 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 94 (40.6 bits)