BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (137 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q06399 Uncharacterized lipoprotein yedD n=102 Tax=Enter... 229 3e-59 UniRef50_B2VES4 Putative outer membrane lipoprotein n=1 Tax=Erwi... 135 5e-31 UniRef50_D2T9L9 Uncharacterized lipoprotein yedD n=3 Tax=Enterob... 134 1e-30 UniRef50_Q2NUW7 Putative uncharacterized protein n=1 Tax=Sodalis... 114 1e-24 >UniRef50_Q06399 Uncharacterized lipoprotein yedD n=102 Tax=Enterobacteriaceae RepID=YEDD_SALTY Length = 141 Score = 229 bits (583), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 108/129 (83%), Positives = 121/129 (93%) Query: 1 MKKLAIAGALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTK 60 MKK+AI GALL+LAGCAEVENYN+VVKTPAP L GYWQ+KGPQR LVSPEAI SL+VTK Sbjct: 1 MKKVAIVGALLVLAGCAEVENYNDVVKTPAPAGLEGYWQSKGPQRKLVSPEAIASLVVTK 60 Query: 61 EGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPT 120 EGDTLDCRQWQRVIA+PGKLT++SDDLTNVTVKRELYE+ERDGNT+EYDGMT++RV RPT Sbjct: 61 EGDTLDCRQWQRVIALPGKLTMLSDDLTNVTVKRELYEIERDGNTLEYDGMTLQRVARPT 120 Query: 121 AECAAALDK 129 ECAAAL+K Sbjct: 121 PECAAALEK 129 >UniRef50_B2VES4 Putative outer membrane lipoprotein n=1 Tax=Erwinia tasmaniensis RepID=B2VES4_ERWT9 Length = 133 Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 70/130 (53%), Positives = 89/130 (68%), Gaps = 3/130 (2%) Query: 1 MKKLAIA--GALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIV 58 MKK IA GA++L +GCAE+ NY + VKTPAP L G WQT GPQ LVS +A SLI+ Sbjct: 1 MKKWIIATVGAMIL-SGCAELPNYASAVKTPAPAELVGNWQTLGPQSGLVSNQAKASLII 59 Query: 59 TKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDR 118 T EGDTLDCRQWQRV+A PGKLT D NV ++ + +E DG + YD + +++V + Sbjct: 60 TAEGDTLDCRQWQRVLAKPGKLTRADDRWVNVNTQQRVMPLELDGAELHYDRLILQKVAQ 119 Query: 119 PTAECAAALD 128 PTAEC L+ Sbjct: 120 PTAECQQRLN 129 >UniRef50_D2T9L9 Uncharacterized lipoprotein yedD n=3 Tax=Enterobacteriaceae RepID=D2T9L9_ERWPY Length = 141 Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 69/135 (51%), Positives = 89/135 (65%), Gaps = 3/135 (2%) Query: 1 MKKLAIA--GALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIV 58 MKK IA GA++L GCAE+ NY+ VKTPAP L G WQT GPQ LVS +A SL++ Sbjct: 1 MKKWIIATVGAMVL-NGCAELPNYSGAVKTPAPAELVGNWQTFGPQSGLVSDQAKASLLI 59 Query: 59 TKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDR 118 T +G+TLDCRQWQRV+A PGKLT D NV ++ + +E GN + YD + +++V + Sbjct: 60 TAQGETLDCRQWQRVLAKPGKLTRADDQWVNVNTQQRVMPLELKGNELHYDRLILQKVAQ 119 Query: 119 PTAECAAALDKAPLP 133 PTAEC LD P Sbjct: 120 PTAECQQQLDALKKP 134 >UniRef50_Q2NUW7 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NUW7_SODGM Length = 159 Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 51/111 (45%), Positives = 69/111 (62%) Query: 13 LAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTKEGDTLDCRQWQR 72 L+GCA Y VV PAP +G W + PQ+ALVSPEA+ SLI+++ G+TLDCR WQR Sbjct: 14 LSGCAGAPEYVKVVAAPAPQGYSGIWTSTSPQKALVSPEAVASLIISRSGNTLDCRSWQR 73 Query: 73 VIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPTAEC 123 I PGKLT L N+ K E+ + D + + Y G+T++R PT +C Sbjct: 74 TIIRPGKLTTRDARLYNINEKNEVSALRLDHDVLHYGGLTLQRSTSPTEQC 124 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q06399 Uncharacterized lipoprotein yedD n=102 Tax=Enter... 218 4e-56 UniRef50_D2T9L9 Uncharacterized lipoprotein yedD n=3 Tax=Enterob... 211 4e-54 UniRef50_B2VES4 Putative outer membrane lipoprotein n=1 Tax=Erwi... 211 7e-54 UniRef50_Q2NUW7 Putative uncharacterized protein n=1 Tax=Sodalis... 178 4e-44 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_Q06399 Uncharacterized lipoprotein yedD n=102 Tax=Enterobacteriaceae RepID=YEDD_SALTY Length = 141 Score = 218 bits (555), Expect = 4e-56, Method: Composition-based stats. Identities = 108/129 (83%), Positives = 121/129 (93%) Query: 1 MKKLAIAGALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTK 60 MKK+AI GALL+LAGCAEVENYN+VVKTPAP L GYWQ+KGPQR LVSPEAI SL+VTK Sbjct: 1 MKKVAIVGALLVLAGCAEVENYNDVVKTPAPAGLEGYWQSKGPQRKLVSPEAIASLVVTK 60 Query: 61 EGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPT 120 EGDTLDCRQWQRVIA+PGKLT++SDDLTNVTVKRELYE+ERDGNT+EYDGMT++RV RPT Sbjct: 61 EGDTLDCRQWQRVIALPGKLTMLSDDLTNVTVKRELYEIERDGNTLEYDGMTLQRVARPT 120 Query: 121 AECAAALDK 129 ECAAAL+K Sbjct: 121 PECAAALEK 129 >UniRef50_D2T9L9 Uncharacterized lipoprotein yedD n=3 Tax=Enterobacteriaceae RepID=D2T9L9_ERWPY Length = 141 Score = 211 bits (538), Expect = 4e-54, Method: Composition-based stats. Identities = 69/135 (51%), Positives = 89/135 (65%), Gaps = 3/135 (2%) Query: 1 MKKLAIA--GALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIV 58 MKK IA GA++L GCAE+ NY+ VKTPAP L G WQT GPQ LVS +A SL++ Sbjct: 1 MKKWIIATVGAMVL-NGCAELPNYSGAVKTPAPAELVGNWQTFGPQSGLVSDQAKASLLI 59 Query: 59 TKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDR 118 T +G+TLDCRQWQRV+A PGKLT D NV ++ + +E GN + YD + +++V + Sbjct: 60 TAQGETLDCRQWQRVLAKPGKLTRADDQWVNVNTQQRVMPLELKGNELHYDRLILQKVAQ 119 Query: 119 PTAECAAALDKAPLP 133 PTAEC LD P Sbjct: 120 PTAECQQQLDALKKP 134 >UniRef50_B2VES4 Putative outer membrane lipoprotein n=1 Tax=Erwinia tasmaniensis RepID=B2VES4_ERWT9 Length = 133 Score = 211 bits (536), Expect = 7e-54, Method: Composition-based stats. Identities = 70/134 (52%), Positives = 89/134 (66%), Gaps = 3/134 (2%) Query: 1 MKKLAIA--GALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIV 58 MKK IA GA++L +GCAE+ NY + VKTPAP L G WQT GPQ LVS +A SLI+ Sbjct: 1 MKKWIIATVGAMIL-SGCAELPNYASAVKTPAPAELVGNWQTLGPQSGLVSNQAKASLII 59 Query: 59 TKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDR 118 T EGDTLDCRQWQRV+A PGKLT D NV ++ + +E DG + YD + +++V + Sbjct: 60 TAEGDTLDCRQWQRVLAKPGKLTRADDRWVNVNTQQRVMPLELDGAELHYDRLILQKVAQ 119 Query: 119 PTAECAAALDKAPL 132 PTAEC L+ Sbjct: 120 PTAECQQRLNALKK 133 >UniRef50_Q2NUW7 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NUW7_SODGM Length = 159 Score = 178 bits (452), Expect = 4e-44, Method: Composition-based stats. Identities = 51/112 (45%), Positives = 69/112 (61%) Query: 13 LAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTKEGDTLDCRQWQR 72 L+GCA Y VV PAP +G W + PQ+ALVSPEA+ SLI+++ G+TLDCR WQR Sbjct: 14 LSGCAGAPEYVKVVAAPAPQGYSGIWTSTSPQKALVSPEAVASLIISRSGNTLDCRSWQR 73 Query: 73 VIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPTAECA 124 I PGKLT L N+ K E+ + D + + Y G+T++R PT +C Sbjct: 74 TIIRPGKLTTRDARLYNINEKNEVSALRLDHDVLHYGGLTLQRSTSPTEQCQ 125 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.306 0.127 0.374 Lambda K H 0.267 0.0384 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 528,482,608 Number of Sequences: 3077464 Number of extensions: 18369377 Number of successful extensions: 54355 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54346 Number of HSP's gapped (non-prelim): 9 length of query: 137 length of database: 1,040,396,356 effective HSP length: 102 effective length of query: 35 effective length of database: 726,495,028 effective search space: 25427325980 effective search space used: 25427325980 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 87 (38.2 bits)