BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (110 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q46867 Inner membrane protein ygiZ n=28 Tax=Enterobacte... 221 8e-57 UniRef50_C6DI97 Putative uncharacterized protein n=3 Tax=Pectoba... 85 5e-16 UniRef50_D0KBL4 Putative uncharacterized protein n=1 Tax=Pectoba... 55 9e-07 >UniRef50_Q46867 Inner membrane protein ygiZ n=28 Tax=Enterobacteriaceae RepID=YGIZ_ECOLI Length = 110 Score = 221 bits (562), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 110/110 (100%), Positives = 110/110 (100%) Query: 1 MLKQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICSIPSVSGEDRILQAMIA 60 MLKQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICSIPSVSGEDRILQAMIA Sbjct: 1 MLKQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICSIPSVSGEDRILQAMIA 60 Query: 61 AFFLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCGWWLFWGRFIFCY 110 AFFLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCGWWLFWGRFIFCY Sbjct: 61 AFFLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCGWWLFWGRFIFCY 110 >UniRef50_C6DI97 Putative uncharacterized protein n=3 Tax=Pectobacterium RepID=C6DI97_PECCP Length = 110 Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 1/107 (0%) Query: 3 KQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICSIPSVSGEDRILQAMIAAF 62 K I + + Y + Y++++ + NKYDWM+E G +ICSIP S +R LQA AA Sbjct: 5 KGNIVDVIAMVGYFLFAYFIME-LLSINKYDWMMEPGDSICSIPHQSFRNRTLQAGAAAL 63 Query: 63 FLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCGWWLFWGRFIFC 109 FL+TPL I + R L+M+ ++ Y+ + V G WLF+GRF C Sbjct: 64 FLVTPLFIALARNLYMKNRYKTVYYMVGILCVTVYGGWLFFGRFALC 110 >UniRef50_D0KBL4 Putative uncharacterized protein n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KBL4_PECWW Length = 108 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 6/111 (5%) Query: 1 MLKQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICSIPSVSGEDRILQAMIA 60 M K ++ + + Y ++ + ++ +YDWML+SG ++C +P I ++ Sbjct: 1 MYKSRLVEVLSVIGYFLMACFFMN-ILNIGEYDWMLQSGESLCDLPLDDDTKDITAPLLV 59 Query: 61 AFFLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCG--WWLFWGRFIFC 109 F + PL+I ++R +F++ F+ V V+ LG+ V G WW+FW ++ C Sbjct: 60 TVFGI-PLLIALIRDVFLKHFFK--VAVYFLGLIAVIGYWWWIFWEKYSAC 107 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C6DI97 Putative uncharacterized protein n=3 Tax=Pectoba... 129 2e-29 UniRef50_Q46867 Inner membrane protein ygiZ n=28 Tax=Enterobacte... 124 7e-28 UniRef50_D0KBL4 Putative uncharacterized protein n=1 Tax=Pectoba... 106 2e-22 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_C6DI97 Putative uncharacterized protein n=3 Tax=Pectobacterium RepID=C6DI97_PECCP Length = 110 Score = 129 bits (325), Expect = 2e-29, Method: Composition-based stats. Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 1/107 (0%) Query: 3 KQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICSIPSVSGEDRILQAMIAAF 62 K I + + Y + Y++++ + NKYDWM+E G +ICSIP S +R LQA AA Sbjct: 5 KGNIVDVIAMVGYFLFAYFIME-LLSINKYDWMMEPGDSICSIPHQSFRNRTLQAGAAAL 63 Query: 63 FLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCGWWLFWGRFIFC 109 FL+TPL I + R L+M+ ++ Y+ + V G WLF+GRF C Sbjct: 64 FLVTPLFIALARNLYMKNRYKTVYYMVGILCVTVYGGWLFFGRFALC 110 >UniRef50_Q46867 Inner membrane protein ygiZ n=28 Tax=Enterobacteriaceae RepID=YGIZ_ECOLI Length = 110 Score = 124 bits (312), Expect = 7e-28, Method: Composition-based stats. Identities = 110/110 (100%), Positives = 110/110 (100%) Query: 1 MLKQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICSIPSVSGEDRILQAMIA 60 MLKQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICSIPSVSGEDRILQAMIA Sbjct: 1 MLKQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICSIPSVSGEDRILQAMIA 60 Query: 61 AFFLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCGWWLFWGRFIFCY 110 AFFLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCGWWLFWGRFIFCY Sbjct: 61 AFFLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCGWWLFWGRFIFCY 110 >UniRef50_D0KBL4 Putative uncharacterized protein n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KBL4_PECWW Length = 108 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Query: 1 MLKQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICSIPSVSGEDRILQAMIA 60 M K ++ + + Y ++ + ++ +YDWML+SG ++C +P I ++ Sbjct: 1 MYKSRLVEVLSVIGYFLMACFFMN-ILNIGEYDWMLQSGESLCDLPLDDDTKDITAPLLV 59 Query: 61 AFFLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCGWWLFWGRFIFC 109 F + PL+I ++R +F++ F+ VY L + WW+FW ++ C Sbjct: 60 TVFGI-PLLIALIRDVFLKHFFKVAVYFLGLIAVIGYWWWIFWEKYSAC 107 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.329 0.146 0.453 Lambda K H 0.267 0.0453 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 461,723,065 Number of Sequences: 3077464 Number of extensions: 17173100 Number of successful extensions: 103356 Number of sequences better than 1.0e-01: 7 Number of HSP's better than 0.1 without gapping: 6 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 103341 Number of HSP's gapped (non-prelim): 11 length of query: 110 length of database: 1,040,396,356 effective HSP length: 78 effective length of query: 32 effective length of database: 800,354,164 effective search space: 25611333248 effective search space used: 25611333248 T: 11 A: 40 X1: 16 ( 7.6 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.3 bits) S2: 87 (38.0 bits)