BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (240 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Ta... 486 e-136 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 249 8e-65 UniRef50_A6VZA5 Two component transcriptional regulator, winged ... 243 4e-63 UniRef50_UPI000038414E COG0745: Response regulators consisting o... 235 7e-61 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 233 4e-60 UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT 233 5e-60 UniRef50_B2SJA5 Two-component system regulatory protein n=11 Tax... 221 1e-56 UniRef50_B9MF92 Two component transcriptional regulator, winged ... 218 1e-55 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 218 2e-55 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 214 3e-54 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 199 6e-50 UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bac... 189 5e-47 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 188 2e-46 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 187 2e-46 UniRef50_C0WE14 Two-component system transcriptional regulator n... 182 9e-45 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 182 9e-45 UniRef50_Q2G7F8 Two component transcriptional regulator, winged ... 181 2e-44 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 181 2e-44 UniRef50_A7BPZ9 Two-component system response regulator n=1 Tax=... 180 3e-44 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 180 3e-44 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 180 4e-44 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 179 6e-44 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 179 1e-43 UniRef50_B3PD41 Two-component response regulator CreB n=2 Tax=Ps... 177 2e-43 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 177 3e-43 UniRef50_C7QI13 Two component transcriptional regulator, winged ... 177 3e-43 UniRef50_Q1IY67 Two component transcriptional regulator, winged ... 177 4e-43 UniRef50_C4L340 Two component transcriptional regulator, winged ... 175 1e-42 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 174 2e-42 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 174 2e-42 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 174 3e-42 UniRef50_B5ZZQ5 Two component transcriptional regulator, winged ... 173 4e-42 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 173 6e-42 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 172 6e-42 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 172 7e-42 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 172 8e-42 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 171 2e-41 UniRef50_Q3JG93 Response regulator protein n=61 Tax=Proteobacter... 170 3e-41 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 170 4e-41 UniRef50_C6PCT6 Two component transcriptional regulator, winged ... 170 4e-41 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 170 5e-41 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 169 6e-41 UniRef50_B2TMR2 Transcriptional regulatory protein ResD n=1 Tax=... 169 8e-41 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 169 8e-41 UniRef50_C7MDU8 Response regulator with CheY-like receiver domai... 169 1e-40 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 169 1e-40 UniRef50_P08368 Transcriptional regulatory protein creB n=64 Tax... 168 1e-40 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 168 2e-40 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 168 2e-40 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 166 5e-40 UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostrid... 166 7e-40 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 166 8e-40 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 166 9e-40 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_D1C280 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 165 1e-39 UniRef50_B3DXI2 Phosphate regulon transcriptional regulatory pro... 164 2e-39 UniRef50_A4C4T0 Response regulator receiver domain protein (CheY... 164 2e-39 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 164 2e-39 UniRef50_B7IXR9 DNA-binding response regulator n=167 Tax=Bacilli... 164 2e-39 UniRef50_C7I0W4 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_C6CSH8 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_B4WZT8 Response regulator receiver domain protein n=1 T... 164 3e-39 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 164 3e-39 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 164 3e-39 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 164 3e-39 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 164 3e-39 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 163 4e-39 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 163 5e-39 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 163 5e-39 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 163 5e-39 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 163 5e-39 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 163 5e-39 UniRef50_C5CP31 Two component transcriptional regulator, winged ... 163 6e-39 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 162 6e-39 UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphap... 162 7e-39 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 162 8e-39 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 162 8e-39 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 162 9e-39 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 162 9e-39 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 162 1e-38 UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanob... 161 1e-38 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 161 2e-38 UniRef50_C6CHY9 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regu... 161 2e-38 UniRef50_A1VI78 Two component transcriptional regulator, winged ... 160 2e-38 UniRef50_Q21BK9 Two component transcriptional regulator, winged ... 160 2e-38 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 160 3e-38 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 160 3e-38 UniRef50_B4RCQ3 Response regulator n=3 Tax=Alphaproteobacteria R... 160 3e-38 UniRef50_B0SW50 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_C6WIA6 Two component transcriptional regulator, winged ... 160 5e-38 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 159 6e-38 UniRef50_B0TF57 Transcriptional regulator, putative n=1 Tax=Heli... 159 6e-38 UniRef50_C7I0A5 Two component transcriptional regulator PhoB, wi... 159 6e-38 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 159 7e-38 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 159 7e-38 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 159 8e-38 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 159 8e-38 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 159 9e-38 UniRef50_D2R5T3 Two component transcriptional regulator, winged ... 159 1e-37 UniRef50_C0DY83 Putative uncharacterized protein n=1 Tax=Eikenel... 159 1e-37 UniRef50_A8VQC0 Response regulator receiver protein n=2 Tax=Baci... 159 1e-37 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 158 1e-37 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 158 1e-37 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 158 1e-37 UniRef50_B4U9Z2 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 158 1e-37 UniRef50_A3ERN0 Putative two component transcriptional regulator... 158 1e-37 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 158 2e-37 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 158 2e-37 UniRef50_Q2BDB2 Two-component response regulator n=1 Tax=Bacillu... 157 2e-37 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 157 2e-37 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 157 2e-37 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 157 2e-37 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 157 2e-37 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 157 3e-37 UniRef50_A3Y9U3 Response regulator protein n=1 Tax=Marinomonas s... 157 3e-37 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 157 3e-37 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 157 4e-37 UniRef50_B3E8G4 Two component transcriptional regulator, winged ... 157 4e-37 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 156 5e-37 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 156 6e-37 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 156 6e-37 UniRef50_Q3ATG7 Two component transcriptional regulator, winged ... 156 6e-37 UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobac... 156 6e-37 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 156 7e-37 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 156 7e-37 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 155 8e-37 UniRef50_C3X860 Response regulator receiver protein n=2 Tax=Oxal... 155 9e-37 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 155 1e-36 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 155 1e-36 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_D0IVE7 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 155 1e-36 UniRef50_A4SZ97 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 155 1e-36 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 155 2e-36 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 155 2e-36 UniRef50_A3Y9W5 DNA-binding response regulator n=1 Tax=Marinomon... 154 2e-36 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 154 2e-36 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_C1SP47 Response regulator with CheY-like receiver domai... 154 2e-36 UniRef50_B1HT37 Transcriptional regulatory protein srrA (Staphyl... 154 2e-36 UniRef50_B8G179 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_P50351 Transcriptional regulatory protein chvI n=188 Ta... 154 3e-36 UniRef50_C7QAE5 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae ... 154 3e-36 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 154 3e-36 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 154 3e-36 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 154 3e-36 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 153 4e-36 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 153 4e-36 UniRef50_B8G223 Two component transcriptional regulator, winged ... 153 4e-36 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 153 4e-36 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 153 5e-36 UniRef50_Q9KAM3 Two-component response regulator n=1 Tax=Bacillu... 153 5e-36 UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV... 153 5e-36 UniRef50_A9GK22 Response regulator n=1 Tax=Sorangium cellulosum ... 153 5e-36 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 153 6e-36 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 153 6e-36 UniRef50_C4WQ62 Probable transcriptional regulator ycf27 n=1 Tax... 153 6e-36 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 153 6e-36 UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory pro... 152 6e-36 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 152 7e-36 UniRef50_D0LHP7 Two component transcriptional regulator, winged ... 152 7e-36 UniRef50_A9D5A2 Osmolarity response regulator n=1 Tax=Hoeflea ph... 152 7e-36 UniRef50_B8JG70 Two component transcriptional regulator, winged ... 152 8e-36 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 152 9e-36 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 152 9e-36 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 152 1e-35 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_B1JFX2 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 152 1e-35 UniRef50_C4KB06 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 152 1e-35 UniRef50_C8WHK8 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_A6G8V6 DNA-binding response regulator n=1 Tax=Plesiocys... 152 1e-35 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 151 1e-35 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 151 2e-35 UniRef50_A9BXU4 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Olig... 151 2e-35 UniRef50_A6VRR3 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_Q3A190 Two component signal transduction response regul... 151 2e-35 UniRef50_UPI00016C030B two-component system response regulator n... 151 2e-35 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_A4AL32 Putative two-component system response regulator... 150 2e-35 UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax... 150 3e-35 UniRef50_D0KVI4 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_B6BUZ2 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_P0A5Z5 DNA-binding response regulator mtrA n=76 Tax=Bac... 150 3e-35 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 150 3e-35 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_Q2BRQ1 Transcriptional regulatory protein CpxR (Fragmen... 150 3e-35 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 150 4e-35 UniRef50_B5XQM1 DNA-binding response regulator n=30 Tax=Bacteria... 150 5e-35 UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory pro... 150 5e-35 UniRef50_A9BP07 Two component transcriptional regulator, winged ... 150 5e-35 UniRef50_B8I272 Two component transcriptional regulator, winged ... 149 6e-35 UniRef50_Q47ZK7 DNA-binding response regulator n=2 Tax=Alteromon... 149 6e-35 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 149 6e-35 UniRef50_C7N3P1 Response regulator with CheY-like receiver domai... 149 7e-35 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 149 8e-35 UniRef50_Q1LHM7 Two component transcriptional regulator, winged ... 149 9e-35 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 149 9e-35 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 149 1e-34 UniRef50_A9AXY0 Two component transcriptional regulator, winged ... 149 1e-34 UniRef50_A9ANV0 Two component transcriptional regulator, winged ... 149 1e-34 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 149 1e-34 UniRef50_A9ASF4 Two component transcriptional regulator, winged ... 149 1e-34 UniRef50_A8GHG0 Two component transcriptional regulator, winged ... 149 1e-34 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 149 1e-34 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 148 1e-34 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 148 1e-34 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 148 2e-34 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 148 2e-34 UniRef50_B0S1J7 Two-component response regulator n=16 Tax=Clostr... 148 2e-34 UniRef50_Q6MA20 Putative two-component response regulator phoP n... 148 2e-34 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 148 2e-34 UniRef50_A8UXR4 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 147 2e-34 UniRef50_B3PFT8 AbfR arabinofuranosidase two component system re... 147 3e-34 UniRef50_UPI00003844D5 COG0745: Response regulators consisting o... 147 3e-34 UniRef50_C8NC13 DNA-binding response regulator n=1 Tax=Cardiobac... 147 3e-34 UniRef50_Q1J3D6 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_Q0SQL4 Two-component response regulator n=10 Tax=Firmic... 147 3e-34 UniRef50_C4L703 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 147 4e-34 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 147 4e-34 UniRef50_A9KNR4 Two component transcriptional regulator, winged ... 147 4e-34 UniRef50_A3W0Y1 DNA-binding response regulator TorR n=2 Tax=Rose... 146 5e-34 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 146 5e-34 UniRef50_A0L7S7 Two component transcriptional regulator, winged ... 146 5e-34 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 146 6e-34 UniRef50_B9QSJ0 Response regulator receiver domain protein n=1 T... 146 6e-34 UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional r... 146 7e-34 >UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Tax=Bacteria RepID=BAER_ECOL6 Length = 240 Score = 486 bits (1251), Expect = e-136, Method: Compositional matrix adjust. Identities = 240/240 (100%), Positives = 240/240 (100%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL Sbjct: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR Sbjct: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 Query: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF Sbjct: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV 240 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV Sbjct: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV 240 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 249 bits (635), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 118/228 (51%), Positives = 162/228 (71%), Gaps = 6/228 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 ILIVEDE K+ LL DYL A Y T++ G +V+ V+ DLILLDLMLPG DGL Sbjct: 2 SHILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDGL 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 T+CREI+ FS+I I+MVTA+++EIDRLLGLE+GADDYICKP+SPREVVARVKTILRR P Sbjct: 62 TICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRINP 121 Query: 131 ------QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + +Q + + ++ +QA+ ++LT EF LL L+ PG+++SR Q Sbjct: 122 PLTTGINTNIAKQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRIYSRSQ 181 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L++ +Y D RVV++RTIDSHIK LR+KL +++++ +++VY VGY+ Sbjct: 182 LIDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKL 229 >UniRef50_A6VZA5 Two component transcriptional regulator, winged helix family n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZA5_MARMS Length = 226 Score = 243 bits (620), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 118/228 (51%), Positives = 165/228 (72%), Gaps = 10/228 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++LI+EDEPKL +L+ YL A Y + GD + Y++ D++LLDLMLPG DG+ Sbjct: 3 KVLIIEDEPKLAELMSAYLEQAGYEHHHLDRGDIAVNYIKNNQVDIVLLDLMLPGLDGVE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+++R+FS +PI+MVTAK EEIDRL+GLE+GADDY+CKP+SPRE+VARVK LRR Sbjct: 63 ICKQVRQFSGVPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREIVARVKANLRRV--- 119 Query: 132 RELQQQDAESP----LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 EL Q AESP +D R +A+++G ++DLT EF+LL+ L EPG+VF R+ ++ Sbjct: 120 -ELDQ--AESPRTDGFDLDVDRLRATYKGDLIDLTTVEFQLLQLLIKEPGRVFGRDLIMK 176 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +Y D RVV+DRTIDSHIK LR+K+ ++ E + I +VYG GYR+E + Sbjct: 177 SIYADSRVVSDRTIDSHIKKLRKKISAVAPELNVIHSVYGAGYRFENN 224 >UniRef50_UPI000038414E COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038414E Length = 229 Score = 235 bits (600), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 110/222 (49%), Positives = 161/222 (72%), Gaps = 1/222 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+VEDEP + +L++YLR A Y+P+ ++ G L +R+ PPDL++LD+MLPG DG Sbjct: 6 KILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIMLPGMDGTA 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CRE+RRFS IP++MVTA++EEIDRLLGLE+GADDYICKP+SPREVVAR+ ++ RR + Sbjct: 66 VCRELRRFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRRMEWG 125 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + + L ID+ + G L LTP EFRL++ L+ PG++++R Q+L+ Y Sbjct: 126 NPVPAS-GPAQLEIDDAGLRICINGNRLPLTPTEFRLMRLLASSPGRIYTRAQILDLAYH 184 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + V+DR IDSH+KN+R+K+ S+ + I +VYG+GYR+E Sbjct: 185 GDQDVSDRIIDSHVKNIRKKISSVWPDVDVIHSVYGIGYRYE 226 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 233 bits (594), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 113/221 (51%), Positives = 153/221 (69%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIVEDEPK+ + L YL A + + GD+ +VRQ PDL+LLD+MLPG DG+ + Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C+E+R FS IPI+M+TA++EEIDRLLGLE+GADDYICKP+SPREVVARVK +LRR + Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNTPQ 126 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 E ++ E P+I+DE + S G L LTP+EF +LK + P +VFSR +LL+ Sbjct: 127 EESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLAIGS 186 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 DRTIDSHI+NLR+K++ + I ++YG GY++ Sbjct: 187 QFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFN 227 >UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT Length = 231 Score = 233 bits (593), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 121/235 (51%), Positives = 159/235 (67%), Gaps = 11/235 (4%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + N IL+VEDE + Q+LI+YL+ + + T G V+ V+ PDLILLD+ LP Sbjct: 1 MTNNDVHILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G +GL +C+EIR FS +PI MVTA+IEEIDRLLGLE+GADDYICKP+SPREVVAR+K + Sbjct: 61 GKNGLEVCKEIRAFSTVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALF 120 Query: 126 RRCKPQRELQQQDAESP----LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 RR +QQ P IDE + + S++ + LDLTP E+RLLK L PG+V+S Sbjct: 121 RR------MQQIGVPEPTRTGFQIDEAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYS 174 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLES-LDAEQSFIRAVYGVGYRWEAD 235 R QLL+ Y +++ DR IDSHIKNLR+K+ + L Q I AVYG+GYR+E Sbjct: 175 RSQLLDLCYQQEQLIIDRVIDSHIKNLRKKISTALPPGQEVIHAVYGIGYRFEVS 229 >UniRef50_B2SJA5 Two-component system regulatory protein n=11 Tax=Proteobacteria RepID=B2SJA5_XANOP Length = 247 Score = 221 bits (564), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 121/234 (51%), Positives = 157/234 (67%), Gaps = 11/234 (4%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M+ LP +LIVEDEP+L ++ YL A ++ I+ G Q L R PDL+LL Sbjct: 13 MSSLP---PIGHVLIVEDEPRLAAVVGAYLHAGGHSHDWIADGAQALGAFRAKKPDLVLL 69 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 DLMLP DGL +CR++R+ S +P++MVTA++EEIDRL G+EIGADDYICKP+SPREV AR Sbjct: 70 DLMLPNRDGLEICRDLRKESAVPVIMVTARVEEIDRLRGVEIGADDYICKPFSPREVAAR 129 Query: 121 VKTILRRCKPQRELQQQDAESP-LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 V+ +L P+ A +P L IDE +AS G+ LDLT FRLL+TL+ PG+V Sbjct: 130 VQAVL----PRHRHDPYGAPAPGLHIDEDACRASVDGRALDLTQVAFRLLRTLAAAPGRV 185 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 SRE + L D+R VTDRT+DSH+KNLRRKL D E ++R+V G GYR E Sbjct: 186 CSREHRMGRLSADHRSVTDRTVDSHVKNLRRKLA--DGED-WVRSVSGAGYRVE 236 >UniRef50_B9MF92 Two component transcriptional regulator, winged helix family n=4 Tax=Comamonadaceae RepID=B9MF92_DIAST Length = 242 Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 123/235 (52%), Positives = 159/235 (67%), Gaps = 6/235 (2%) Query: 9 NTP-RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQ-TPPDLILLDLMLPG 66 TP RIL+VEDE + +L+DYLR A YAP + G L + PPDL LLD+MLPG Sbjct: 2 TTPARILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLPG 61 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DGL + R+ RR +D PIV++TA++EE+DRL+GLE+GADDYICKP+SPREVVARVK +LR Sbjct: 62 IDGLEVLRQARRHTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLR 121 Query: 127 R--CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 R Q Q + A L++DE + QA+ G ++ LTP E+ LL+TL P V SR Q Sbjct: 122 RRAPLAQAAAQAELAYGALVLDEAQLQATLHGTLVALTPREWHLLRTLLAHPRSVLSRAQ 181 Query: 185 LLNHLY-DDYRVVTDRTIDSHIKNLRRKLESLD-AEQSFIRAVYGVGYRWEADAC 237 LL H Y D + +R +DSHIKNLRRKL S D A +IR+VYGVG+ ++ A Sbjct: 182 LLQHAYPDSPQEPNERAVDSHIKNLRRKLRSADPAGHDWIRSVYGVGFAFDPPAA 236 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 119/232 (51%), Positives = 149/232 (64%), Gaps = 1/232 (0%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M E I I IVED L LL +YL + +A I GD+++P +R PPDLILL Sbjct: 1 MMERAITMINKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILL 60 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 DLMLPG DG+TLCREIR FS +PI+MVTAK+EEIDRLLGLEIGADDY+CKP+SPREVVAR Sbjct: 61 DLMLPGADGVTLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVAR 120 Query: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 VK +LRR + + PL++ + GK L +T +EF LL PGKVF Sbjct: 121 VKAVLRRGGEEPH-EAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVF 179 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 SR++L+ + DR ID HIKNLR+KL + I +VYGVGY++ Sbjct: 180 SRDELIAKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKF 231 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 109/224 (48%), Positives = 156/224 (69%), Gaps = 6/224 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +++VEDE +L L+ DYL A+ + ++ G + Q P+L++LDLM+P DGLT+ Sbjct: 4 VMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDGLTI 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR++R SD+PI+MVTA+ EEIDR+LGL +GADDY+CKP+SP+E+VARV+ +LRR + Sbjct: 64 CRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLDRKA 123 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 E +Q D ID+ + + ++ K L+LTP EFRLL+ G+V+SR QLL+H+ D Sbjct: 124 EPEQNDL---FRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQLLDHINPD 180 Query: 193 YRVVTDRTIDSHIKNLRRKL-ESLDA--EQSFIRAVYGVGYRWE 233 V DR IDSHIKNLRRK+ E+ D +++AVYGVGYR+E Sbjct: 181 SFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRFE 224 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 199 bits (506), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 100/227 (44%), Positives = 147/227 (64%), Gaps = 9/227 (3%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 + ++LIVEDE + ++L DYL Y +++ GD+V+ +V+ +ILLD+MLP D Sbjct: 2 SNEQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRLD 61 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G T+CRE+R+FSD+PI+M+TAK+EE+DR++G E+G DDYICKP+SPREVVARV +LRR Sbjct: 62 GKTVCREVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRRT 121 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 ++ A P+ +++ A G L LTP+EF + L P +VF+R QL+ Sbjct: 122 -FKKSSDDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQLIEK 180 Query: 189 L----YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 + YD Y +RTID HIKNLR+K+ + I++ YG GY+ Sbjct: 181 VQGYNYDGY----ERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYK 223 >UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bacteria RepID=Q4K4R2_PSEF5 Length = 229 Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 102/225 (45%), Positives = 145/225 (64%), Gaps = 2/225 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + P ILIVEDE + LI L+ + T +S G L + + +P DLI+LD+ LP Sbjct: 2 DAMPHILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPADLIILDIGLPDI 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 G C+++RRFS++P++ ++A+ EIDR++GLEIGADDY+ KP+SPREV ARVK IL+R Sbjct: 62 SGFETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKR 121 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 P+ + + + +ID R Q S+RG+ L LT EFRLL+ L +P +VFSREQLL+ Sbjct: 122 MVPR--VAPEAVAALFVIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLD 179 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L V +R IDSHIK+LR KL + A+ I+ G+GY + Sbjct: 180 ALGVMADVGYERNIDSHIKSLRAKLRLVAAQAEPIQTHRGLGYSY 224 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 188 bits (477), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 95/223 (42%), Positives = 145/223 (65%), Gaps = 1/223 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+VEDE K+ +L +LR + L + G + L + PDLI+LDLMLPG G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 ++IR+ ++ PI+++TA+++E+D+LLGLE+GADDYI KP+SPRE+ R+K +LRR +P Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 ++ S L I+ R +A +L LTP EF++L L+ PG+VFSR +L ++ D Sbjct: 125 QVTNVSI-SNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFGD 183 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +RTID+HI NLR K+E+ + I+ VYG+GY+ A+ Sbjct: 184 IYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 96/227 (42%), Positives = 149/227 (65%), Gaps = 11/227 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L+V+D+ K+ ++L YL Y+ G + + RQ PD++LLD+MLP DG Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP- 130 +C+EIRR SD+PI+M+TA+ +E DR++GLE+GADDY+ KP+SP+EV+AR++ I RR +P Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121 Query: 131 ------QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 +R L+ DA ++D+ + G ++LTP E++LL+ PG+VFSR Q Sbjct: 122 SRRDGGERILKVGDA----VLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQ 177 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 L+ + D +RT+DSHIKNLR+KL + E +I+ +YGVGY+ Sbjct: 178 LIEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYK 224 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 182 bits (462), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 95/224 (42%), Positives = 143/224 (63%), Gaps = 2/224 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILI +D+ KL +L+ Y + + L G + L +++ PD+++LD+M+PG DG + Sbjct: 6 ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGFEV 65 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR R+F+DIPI+ ++AK +E DRL+GL +GADDY+ KP+ RE++ARVK+ LRR + + Sbjct: 66 CRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRGEV 125 Query: 133 ELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH-LY 190 Q E L ID+ RF+ + + LTP EF LL L+ P +VFSR QLL + Sbjct: 126 LSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLLEKAMG 185 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 Y +RTID+HI+NLR+KLE ++ +I VYGVGY+++ Sbjct: 186 GAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQG 229 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 182 bits (462), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 145/227 (63%), Gaps = 10/227 (4%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 + +VED+ + +L+ +L A +A G+ V+P +TPP+L LLD+M+PG DGL + Sbjct: 5 VFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADGLEI 64 Query: 73 CREIRRFSDI---PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 CR+IR I P++ +TAK E D++ GL++GADDYI KP+SPRE++AR+K +LRR + Sbjct: 65 CRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLRRFE 124 Query: 130 ---PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 P + D ++ID G + RG ++ T EFRLL+ L+ PG+VF+R+QLL Sbjct: 125 RPLPPAVVTAGD----IVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ + VT R++D +++ +R K+E + +++ V G GYR+E Sbjct: 181 DAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFE 227 >UniRef50_Q2G7F8 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7F8_NOVAD Length = 243 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 93/225 (41%), Positives = 135/225 (60%), Gaps = 6/225 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 + +VED+ ++ +L DYL A + P S L R PP L+LLD+MLPG DGL Sbjct: 10 VYVVEDDVRIASVLSDYLTAEGFLPRWFSDPLVALASARSQPPALVLLDIMLPGIDGLAF 69 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C +R F D PI+M+TA+I D++ GL GADDY+ KP+SP EV+ARV LRR + + Sbjct: 70 CHRLRAFCDCPIIMLTARISTEDKVAGLSAGADDYVVKPFSPGEVMARVHAHLRRAEGR- 128 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY-- 190 L +IDE + SW+G+ LDL+ AE+ + L +P + F+R QLL+ L Sbjct: 129 -LAAAARNGGYVIDEAGMRISWKGQWLDLSLAEYAVASALMRQPERSFTRGQLLDSLLAV 187 Query: 191 --DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++R +DSHIKN+RRK+ ++D + I VYG+GYR+ Sbjct: 188 LGERTLETSERAVDSHIKNIRRKILAIDPGGACIATVYGLGYRFS 232 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 99/228 (43%), Positives = 143/228 (62%), Gaps = 6/228 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL++ED+P + L+ YL+ + +S G L R+ PD ILLDLMLPG DGLT Sbjct: 4 KILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGLT 63 Query: 72 LCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + R I++ S P+V+VTAK EE DR++GLE+GADDYI KP+ P+E+VARVK +LRR Sbjct: 64 VNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRRR 123 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + Q+ L ++ + P+ ID GR +A++ G LT EF LL L G+V RE LLN Sbjct: 124 ETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLLNT 183 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 ++ D TDRT+D HI+ LR+K+ +++ V +GYR+ + Sbjct: 184 VWGDDYEGTDRTVDVHIRRLRKKMGE---SAAWVETVKQIGYRFREEG 228 >UniRef50_A7BPZ9 Two-component system response regulator n=1 Tax=Beggiatoa sp. PS RepID=A7BPZ9_9GAMM Length = 163 Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 88/157 (56%), Positives = 115/157 (73%), Gaps = 2/157 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ILIVEDE K+ QLL DYL + Y + + GD+V+PYV+QT P LILLD+MLP DG+ Sbjct: 5 HILIVEDEIKIAQLLRDYLEKSDYTVSCLEQGDKVVPYVKQTIPTLILLDIMLPEMDGIA 64 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CREIR FS +PI+M+TAK+EEIDRLLGLE+GADDYICKP+SPREVVARVK +LRR P+ Sbjct: 65 VCREIRTFSSVPIIMITAKVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRTDPE 124 Query: 132 --RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEF 166 +E ++ + +DE +Q + ++L LTP Sbjct: 125 PLKEEGKKWVVGTISLDEKTYQVNIENQVLKLTPVNL 161 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 140/227 (61%), Gaps = 13/227 (5%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIV+DEPK+ ++ YL Y +G + L + PDLI+LD M+P G+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 + REIR+ S IPI+M+TAK EE+D+L+G E G DDY+ KP+S RE+ AR+KTIL+R Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR---- 119 Query: 132 RELQQQDAESPLIIDEG-------RFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 L+ + +++ EG + + +GK LDLTP EF+LL+ PGK +SR + Sbjct: 120 --LEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLE 177 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 LL + + +RTID+HI NLR+K+E A +I+ V+G+GY+ Sbjct: 178 LLEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYK 224 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 95/224 (42%), Positives = 140/224 (62%), Gaps = 4/224 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 I ++ED+ + +L+ L++A YA L S +L + PP L +LD+M+PG DGL + Sbjct: 5 IFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDGLDV 64 Query: 73 CREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 CR +R S IPI+ VTA+ E DR+LGLE+GADDYI KP++PRE++ARVK +LRR + Sbjct: 65 CRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLRRFE 124 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 E ++ID Q RG++ T EFRLL L+ PG+VFSR+ LL+ + Sbjct: 125 RPSTPSLISFED-VVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLLDAV 183 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + D R VT R++D +++ +R K+ES F++ V G GYR+E Sbjct: 184 WGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 179 bits (455), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 103/232 (44%), Positives = 144/232 (62%), Gaps = 9/232 (3%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 + T RIL+VEDE + + YL +Y T + G L + DL++LDLMLP Sbjct: 5 NSETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPR 64 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 G +CR IR SD+PI+M+TAK E DR++GLE+GADDY+ KP+SPRE+VARV+ +LR Sbjct: 65 VPGERVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLR 124 Query: 127 RCKPQRELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR--- 182 R E Q++ E L ID + GK +DLT +EF+LL TLS PG+V+SR Sbjct: 125 RVHADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMEL 184 Query: 183 -EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 E++L + ++ Y +RTIDSH+KNLR K+ ++ V+GVGYR+E Sbjct: 185 VEKVLGYDFEGY----ERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 232 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 145/232 (62%), Gaps = 11/232 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIV+D+ + +L+ YL + ++ G++ + R+ P+LILLDLMLPG DG Sbjct: 6 KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CRE+R+ S IPI+M++AK E D++LGLE+GADDY+ KP+ +E+VARVK +LRR P Sbjct: 66 VCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVPS 125 Query: 132 RELQQQ-------DAES--PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + +Q D S LII++ + ++ G +++ P E L L+ P +VF+R Sbjct: 126 QSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFTR 185 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 EQLL+H++ + RT+D HIK LR K++ D + V+G+GY++E Sbjct: 186 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIK--DHISWRLSTVWGIGYKFEV 235 >UniRef50_B3PD41 Two-component response regulator CreB n=2 Tax=Pseudomonadaceae RepID=B3PD41_CELJU Length = 240 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/237 (40%), Positives = 143/237 (60%), Gaps = 11/237 (4%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP----DLILLDLML 64 + P ILI+EDEP + + L+ L + S+ + + L Y++ +P DL+++D+ L Sbjct: 2 SVPHILILEDEPSIAESLVFVLESESFTTHWETLASRALAYLQASPQRQPVDLVVMDVGL 61 Query: 65 PGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 P G C+++RRFS++P++ +TA+ E+DR++GLEIGADDY+ KP+SPRE+ ARVK I Sbjct: 62 PDMTGFEACKQLRRFSEVPVIFLTARGSELDRVVGLEIGADDYVVKPFSPRELAARVKAI 121 Query: 125 LRRCK------PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGK 178 L+R + QDA S +ID R + ++L LT EF LL+ + +PG+ Sbjct: 122 LKRTRQVGATLASAAADVQDA-SEFVIDTERKTIHYHQQLLGLTRLEFSLLQAMVMQPGR 180 Query: 179 VFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 VFSREQLL+ L DR+ID HIK LR KL +L I+ + G GY ++ D Sbjct: 181 VFSREQLLDALGISTDAGYDRSIDGHIKTLRAKLRALKPGAEPIKTLRGFGYAYQPD 237 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 99/229 (43%), Positives = 145/229 (63%), Gaps = 10/229 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RILIV+DEP + ++ +A G+ L +R DL++LD+ LPG DG Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 72 LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + R++R + P++M+TA+ +E+DR++GLE+GADDY+ KP+SPRE+VARV+ +LRR Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 131 QRELQQQ--DA---ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 L+QQ DA S L +D R +A++R L L P EF LL L+ PG+VF+RE L Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 186 LNHL--YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L + YD+Y V RT+D HI+ LR KL +DAE + I+ +G+GYR+ Sbjct: 183 LGQVWGYDEY--VDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_C7QI13 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=C7QI13_CATAD Length = 241 Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 97/232 (41%), Positives = 136/232 (58%), Gaps = 13/232 (5%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIVED+PK +L+ L++ Y + V PPDL++LDLMLPG DGLT+ Sbjct: 5 ILIVEDDPKQAELIRVSLQSEGYRTAIAHDAPSAFRSVEDCPPDLVVLDLMLPGADGLTI 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR +RR + P++MVTA+ E D L GL++GADDY+ KPYSPRE+VAR++T+LRR +P Sbjct: 65 CRWLRRRGETPVLMVTARSTEDDVLAGLDVGADDYMTKPYSPRELVARIRTVLRRSRPAA 124 Query: 133 ELQQQDAE-------------SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 L++D R G+ + TP EF +L L+ PG+V Sbjct: 125 TTAAIATAANATGAKEAVLQVGGLLVDPARHSVLCDGRPVACTPDEFAVLAALAAAPGRV 184 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 F+R QLL H R T+R +D H+ NLR+K+E+ A + + VYGVGY+ Sbjct: 185 FTRAQLLRHTRGFDRASTERAVDVHVLNLRKKIEANPARPTRLLTVYGVGYK 236 >UniRef50_Q1IY67 Two component transcriptional regulator, winged helix family n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IY67_DEIGD Length = 227 Score = 177 bits (448), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 99/225 (44%), Positives = 138/225 (61%), Gaps = 3/225 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIVEDEP+L ++L Y R Y G L R PDLILLD+MLPG GL + Sbjct: 5 ILIVEDEPQLAEVLEAYARQEGYRTERAGDGLAALTAYRAAQPDLILLDVMLPGRSGLDV 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 + +R P+++VTA+ EE D+++GLE+GADDY+ KP+ PREV+ARVK +LRR Sbjct: 65 LKTVRADGPTPVILVTARAEETDQIVGLELGADDYVVKPFRPREVMARVKAVLRRAHAAL 124 Query: 133 ELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 E ++ PL +D +A G+ L LTPAEFRLL L+ PG+ +RE+LL Sbjct: 125 EGTERPLRVGPLEVDRRAARARVNGQPLGLTPAEFRLLAYLAQVPGRACTREELLAAALP 184 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 D + +R +D+H+ ++RRKL++ A + + V GVGYR EA A Sbjct: 185 DSDAL-ERVVDAHLASVRRKLDAAQAGE-LLHTVRGVGYRLEAPA 227 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 146/233 (62%), Gaps = 6/233 (2%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + E+ RIL+ +DE ++ LL+ L Y S+G + + +++ L+LLD+M+P Sbjct: 1 MSESMFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DGLT C IR FS++PI+++TA+ EE+DR+ GL+IGADDYI KP+SPRE++AR++ L Sbjct: 61 ELDGLTACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATL 120 Query: 126 RRCKPQRELQQQDAESPLI-ID-EGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 RR + Q+ + ++ ID EGR S +GK ++LT EF LL KVFSRE Sbjct: 121 RRTHSFSKEQEATFDVGILSIDIEGR-AVSVKGKTVNLTRKEFDLLYLFITNDEKVFSRE 179 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 QLL+ ++ RT+D+HIK LR KL +I+ V+G+GY++EA+ Sbjct: 180 QLLDQIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 95/234 (40%), Positives = 140/234 (59%), Gaps = 14/234 (5%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 ++ N R+LI+EDE + ++ YL+ Y + +G + + +Q D ++LDLMLP Sbjct: 1 MEANKKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G +C+ IR S +PI+M+TAK+EE DR+ GL+IGADDY+ KP+SP+E+VARV+ I+ Sbjct: 61 DLSGEEICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIM 120 Query: 126 RRCKPQR------ELQQQDAESPLIIDEGRFQASWRG-KMLDLTPAEFRLLKTLSHEPGK 178 RR + EL D + L R +W+ ++++LT EF+LL GK Sbjct: 121 RRTNNEGLKAHLIELNGGDLKVDL-----RDMETWKKDELVELTATEFKLLSIFIQNSGK 175 Query: 179 VFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 VFSR++L+ + V DRTID HIKNLR K+E +I VYGVGYR+ Sbjct: 176 VFSRDELVVKVLGYDYVGYDRTIDVHIKNLRHKIEC--EYYKYIVTVYGVGYRF 227 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 93/230 (40%), Positives = 146/230 (63%), Gaps = 15/230 (6%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +I +V+DE K+ +++ YL + YA + +G + + PDLI+LDLMLP G Sbjct: 11 KIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGED 70 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C +R+ S +PI+M+T K +E D L GL+IGADDY+ KP+SPR++VARVK +LRR + Sbjct: 71 ICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRT--E 128 Query: 132 RELQQQDA-----ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL- 185 EL ++++ ++ LII++ ++ G +++LTP E+ +L T+ PGK+F+RE+L Sbjct: 129 DELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREELI 188 Query: 186 ---LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L + Y DRTIDSHIKNLR K+E E +I + G+GY++ Sbjct: 189 IVTLGQNFKGY----DRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 100/236 (42%), Positives = 138/236 (58%), Gaps = 9/236 (3%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 N +IL+V+DE ++ +LL YL +YA +GD+ + + DLILLDLM+PGTD Sbjct: 5 NETKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTD 64 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G+ +CR+IR PI+M+TAK EE +R+ G E G DDYI KP+SPREVV RVK +LRR Sbjct: 65 GIEVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA 124 Query: 129 KPQRELQQQDAE------SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 S L ID + + G + LTP E+ LL L+ P KV+ R Sbjct: 125 SQTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDR 184 Query: 183 EQLLNHLYDDYRVVTD-RTIDSHIKNLRRKLESLDAEQS-FIRAVYGVGYRWEADA 236 E+LL ++ Y D RT+D+H+K LR KL + E + I V+GVGY++E A Sbjct: 185 EKLLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGA 239 >UniRef50_B5ZZQ5 Two component transcriptional regulator, winged helix family n=12 Tax=Alphaproteobacteria RepID=B5ZZQ5_RHILW Length = 234 Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 140/232 (60%), Gaps = 4/232 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 PRIL+V+DEP + ++ L A T + +G + + R+ DLI+LD+ +P DG Sbjct: 2 APRILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L +CR+IR+ S +PI+ ++A+ EEID++LGLEIG DDY+ KP+SPRE+VARVK IL+R Sbjct: 62 LDVCRQIRKTSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKRSG 121 Query: 130 PQRELQQQDA---ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + E +++ A L +D + + +T EF +L L P VFSRE+L+ Sbjct: 122 NEAEPERRRAIFVAGELSLDRQGRTVMFGDSAISMTVLEFAILDALLSRPDMVFSRERLM 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 Y V DRTIDSHI+N+R K + Q I V+G+G++ +++ R Sbjct: 182 EAAYGAGTYVADRTIDSHIRNIRAKFLAAGG-QGIIATVHGIGFKLGSESGR 232 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 173 bits (438), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 143/235 (60%), Gaps = 7/235 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL++ED+P +G L+ L +A Y+ TL + G++ L + + PD+++LDL LP DG+ + Sbjct: 4 ILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDGIEV 63 Query: 73 CREIRRF-SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR---- 127 CR +RR + PI +VTA+ EEIDR++GLE+GADDYI KP+S RE+ RV RR Sbjct: 64 CRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWDKK 123 Query: 128 --CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 KP + L ID R + + + +++++ EF +L+ ++ PGKVFSRE + Sbjct: 124 AGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSREMI 183 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV 240 L ++ +R IDSH+K +R KLE A+ +I ++G+GYR+ + IV Sbjct: 184 LEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDNYDNIV 238 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 172 bits (437), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 142/234 (60%), Gaps = 16/234 (6%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 P+IL+V+DE K+ ++L +L ++ + S G + L V + PDLI+LDLMLP G Sbjct: 2 NPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C++IR+ PI+M+TAK E D++ G GADDY+ KP+S RE++AR+K ILRR Sbjct: 62 EEVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSN 121 Query: 130 PQRELQQ----QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + E + QD L I R + G+ DLT EF +L TL PG+VF+REQL Sbjct: 122 QKAEKAEIFVYQDGR--LKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQL 179 Query: 186 LNHL----YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + Y Y DRTID+HIKN+R+KL +L+ Q I VYGVGY++E D Sbjct: 180 AKKVMGLEYKGY----DRTIDAHIKNIRKKL-NLEKNQLII-TVYGVGYKFEGD 227 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 172 bits (437), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 138/227 (60%), Gaps = 3/227 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ILI +D P + +L Y + P + + G++ + RQ P ++LLD+M+P DG Sbjct: 3 HILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGYE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR+IR SD+P++++TA+ E+ ++++GL+IGADDYI KP+SP EV+AR++ ILRR + Sbjct: 63 VCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTKK 122 Query: 132 RELQQQD---AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 Q + + + L I+ + G + LT E + TL+ P KVF+R+ LL+ Sbjct: 123 ENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLDS 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 L+ RT+DSHIK LR KL+ L+ I+ ++GVGY++E D Sbjct: 183 LWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVD 229 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 140/222 (63%), Gaps = 2/222 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 + IVEDEP + ++L YL + Y +G + L +R+ PD ++LDLMLP G + Sbjct: 5 VFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEEI 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C++IR SD+PI+M++AK E DR+ G+ IGADDY+ KP+SPREV+ R++ ILRR + Sbjct: 65 CKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTLN 124 Query: 133 ELQ-QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 +++ + +IID + + + + LTP EF ++ ++ PG+VFSR LL + + Sbjct: 125 KMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADLLQKIQE 184 Query: 192 D-YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 D + +R+ID HIKNLR+KLE + +I V+G+GY++ Sbjct: 185 DSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKF 226 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 95/229 (41%), Positives = 139/229 (60%), Gaps = 8/229 (3%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E + +IL+V+DE ++ LL+ L+ +Y T S+G + L +++ L+LLD+M+P Sbjct: 3 EQSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEM 62 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGLT C IR FS++PI+M+TA+ +E+DR+ GL+IGADDYI KP+SPRE++AR++ LRR Sbjct: 63 DGLTACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRR 122 Query: 128 CKPQRELQQQDAE---SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 R Q A L +D GK + LT EF LL KVFSREQ Sbjct: 123 S--HRFTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQ 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 LL+ ++ + RT+D+HIK LR KL I+ V+G+GY++E Sbjct: 181 LLDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKFE 226 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 140/227 (61%), Gaps = 7/227 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R ++VEDE +L ++ YL A Y L G + + R+ PD+++LDL LPG DG+ Sbjct: 65 RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR +R FSD +VM+TA+ +E+D L+GL +GADDY+ KP+SPRE++AR++ ILRR +P+ Sbjct: 125 VCRRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPK 184 Query: 132 RELQQQDAESPLIIDEGRFQAS------W-RGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + A + I+ G W R +++ LT EF LL TL+ P VFSR Q Sbjct: 185 TGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQ 244 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 L++ ++ + V + +D HI +LRRKL+ + ++R V GVGYR Sbjct: 245 LIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYR 291 >UniRef50_Q3JG93 Response regulator protein n=61 Tax=Proteobacteria RepID=Q3JG93_BURP1 Length = 288 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 144/240 (60%), Gaps = 7/240 (2%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M E+P+ R+L++ED+ +L QL+ +YL + ++ T++ GD + VR+ P L++L Sbjct: 49 MNEVPLKY---RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVIL 105 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 DLMLP DG+ +CR IR FS++P++++TA+ + D++ GLE GADDY+ KP PR +VAR Sbjct: 106 DLMLPHLDGMEVCRRIRAFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVAR 165 Query: 121 VKTILRRCKPQRELQQQDAES----PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEP 176 + +LRR +P ++ +E+ L I +WRG+ +DL AEF LL L+ Sbjct: 166 ARALLRRVQPGASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAA 225 Query: 177 GKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 G V SR+ +L L DR++DS I LRR+ E +E I+ ++G GY + A Sbjct: 226 GTVLSRDDILKQLRGIEFDGIDRSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSA 285 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 139/219 (63%), Gaps = 5/219 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 I IV+D+ + Q++ YL+ Y T I ++ + ++ PPDL +LD+MLPG +G Sbjct: 6 IAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGMNGYEF 65 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR IR S+ PI+MV+A+ EE+D++LGLE+G+DDY+ KP+SPRE+VARV L+R K + Sbjct: 66 CRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWKQMK 125 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 +Q A S L++D+ + G+ +++T EF++L LS P + FSR++LL+ ++ Sbjct: 126 SHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELLSLIWGF 185 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 +DR +D I+ +R+KL+ + E V+G GYR Sbjct: 186 DYFGSDRVVDDLIRRIRKKLDKIPLE-----TVWGFGYR 219 >UniRef50_C6PCT6 Two component transcriptional regulator, winged helix family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PCT6_CLOTS Length = 224 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 141/223 (63%), Gaps = 4/223 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 I I++D+ + L++ Y+ Y + + VL + PD+++LD+M+PG DG L Sbjct: 5 IYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAEDVLENFNKDKPDMLILDIMMPGMDGYEL 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK-PQ 131 C+EIR+ SD+PI++V+A+ E++D++LGLE+G+DDYI KP+SPRE++AR+K++ RR K P+ Sbjct: 65 CKEIRKISDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVKMPK 124 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 R + + + ++ DE + + G+ + T EF L++ L+ K F+REQLL ++ Sbjct: 125 RSNEIRIKDIVIVPDERK--VLYNGEEMSFTSMEFELIQFLAKNANKAFTREQLLEKVWK 182 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 R +D +K +R+KL+S E + I ++G GY+ E+ Sbjct: 183 YDSFTETRAVDDMVKRVRKKLQSYGCEFN-ISTIWGYGYKVES 224 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 170 bits (430), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 144/227 (63%), Gaps = 6/227 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+VED+ + LL +L A +A ++ GD L DLI+LD+MLPGTDG Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67 Query: 72 LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +CR +R+ PI+MVTAK EE+D++LGLE+GADDYI KP+S REV+ARVK + RR + Sbjct: 68 ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127 Query: 131 QRELQQQDAESPL-----IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 +E Q Q ++P+ +++ + + + G+ +DLT EF LL + PG+ FSR++L Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L+ ++ T+++HI LR K+E +E +++ V+GVGYR+ Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 169 bits (429), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 89/233 (38%), Positives = 143/233 (61%), Gaps = 7/233 (3%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 +T ++L+ +D+P + +++ Y + G + L + + PD+++LD+M+P D Sbjct: 31 STMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLD 90 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G CREIR+ D PI+M+TAK EE DR+LGLE+GADDY+ KP+SPRE+VAR++ I+RR Sbjct: 91 GFEACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRL 150 Query: 129 KPQRELQQQDA-----ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 +P+ +++ + A L ID + + G+ + P EF LL L PG V+SRE Sbjct: 151 QPKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSRE 210 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 QLL ++ RTID HIK +R++L+ L + I+ V+G+GY++ D+ Sbjct: 211 QLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD--CIQTVWGIGYKFGVDS 261 >UniRef50_B2TMR2 Transcriptional regulatory protein ResD n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TMR2_CLOBB Length = 227 Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 134/222 (60%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 IL+V+DE K+ + + YL + + G + Y DL++LD MLP G Sbjct: 3 NILLVDDEKKICEFVKAYLDKEGFVTDEANDGCTAIRYFDLNRYDLVILDRMLPDISGEE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C IR SD+PI+M+TAKI+E DRL G ++G DDY+CKP++ +E++ RVK+IL+R Sbjct: 63 VCNHIRNKSDVPIIMLTAKIDEEDRLGGFKLGCDDYLCKPFNIKELIFRVKSILKRSGKI 122 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + + I+ + + RGK + LT E+++L ++ P K++SRE+LL + + Sbjct: 123 DFRDIMKFKQGIEINTSSHEVTVRGKKILLTNTEYKILLLMASNPQKIYSREELLESVIE 182 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 +Y DR IDSHIKNLR+K+E + I+ +YGVGYR+E Sbjct: 183 EYYEKMDRVIDSHIKNLRQKIEVNSRDCKIIKTIYGVGYRFE 224 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 96/228 (42%), Positives = 135/228 (59%), Gaps = 2/228 (0%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 + N +LI+EDE L ++L YL Y G L ++ PD+++LDLMLP Sbjct: 4 NTNCYTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPN 63 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 G + R+IR+ + PI+M+TAK E +++ GL IGADDY+ KP SPRE++AR+KTILR Sbjct: 64 MSGEEIARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILR 123 Query: 127 RC--KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 R +P R Q+ + ID + RG + LT EF +L TL+ P KVFSRE Sbjct: 124 RVGKEPGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSREN 183 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L + +Y RTID+HIKNLRRK+E + FI+ V+G GY++ Sbjct: 184 LADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_C7MDU8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=19 Tax=Actinobacteridae RepID=C7MDU8_BRAFD Length = 279 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 139/229 (60%), Gaps = 12/229 (5%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R++++EDEP + + + D L A + + G + V + PD+++LD+MLPG DGL Sbjct: 16 RVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGLE 75 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK-- 129 +CR I+ +P++M+TA+ +E D L+GL +GADDY+ KP+S RE+VAR+K +LRR + Sbjct: 76 VCRRIQADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVRRA 135 Query: 130 ---PQRELQQQDAE--SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 P E ++Q+A L+ID + G LTP EF LL L++ PG V +REQ Sbjct: 136 APPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTREQ 195 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 LL ++D RT+DSH+K LRRKL S +R V+GVGY E Sbjct: 196 LLADVWDWVDATGTRTVDSHVKALRRKLGS-----DLVRTVHGVGYALE 239 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/230 (40%), Positives = 144/230 (62%), Gaps = 8/230 (3%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P IL+V+DEP L + L L + T S G + L R DLI+LDLMLPG DGL Sbjct: 2 PHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGL 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 T+CRE+R PI+M+TAK ++ID++LGLE+GADDYI KP++ RE++AR++ +LRR + Sbjct: 62 TICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121 Query: 131 QRELQQQDAESPLIIDE-----GRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 +QD L++ + + +A G+ L+LT E+ LL+ L+ PG V++R++L Sbjct: 122 A---SRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQEL 178 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 L+ ++ +RT+D H++ +R KLE + ++R +GVGY EA+ Sbjct: 179 LDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_P08368 Transcriptional regulatory protein creB n=64 Tax=Proteobacteria RepID=CREB_ECOLI Length = 229 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 139/225 (61%), Gaps = 13/225 (5%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 + +VEDE + L+ L+ +A + G VL R+ PD+++LD+ LP G L Sbjct: 6 VWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGFEL 65 Query: 73 CREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 CR++ +P++ +TA+ EE+DRLLGLEIGADDY+ KP+SPREV ARV+T+LRR K Sbjct: 66 CRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK-- 123 Query: 132 RELQQQDAESPLI------IDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + SP+I ++E Q SW L LT EF LLKTL PG+V+SR+QL Sbjct: 124 ----KFSTPSPVIRIGHFELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQL 179 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 ++ +++D + DRT+D+HIK LR KL +++ + S I G+GY Sbjct: 180 MDSVWEDAQDTYDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGY 224 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 137/226 (60%), Gaps = 3/226 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 T IL++ED+ ++ ++L +YL Y + G+ L P L+L+DLMLP DG Sbjct: 13 TETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDG 72 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +CR++R+ S++PI++V+A+ +ID++ L +GADDYI KP+SP E+VARVK+ LRR Sbjct: 73 FEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYH 132 Query: 130 PQRELQQQD---AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 L++Q+ + L I+ R GK L LT EF LL TL+ PG+VFS+EQL Sbjct: 133 RYNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLY 192 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 N ++ RT+ HIKN+RRKL FI V+G+GY++ Sbjct: 193 NRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKF 238 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 98/231 (42%), Positives = 142/231 (61%), Gaps = 10/231 (4%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P IL+V+DE + +++ L A Y G+ L R PDLI+LDL++PG DG Sbjct: 2 PNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGY 61 Query: 71 TLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 ++CR ++R IPI+M++A+ +E+D++LGLE+GADDYI KP+SPRE+VARV LRR Sbjct: 62 SICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRR 121 Query: 128 CKPQRELQQQDAES-----PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 K + + +D+++ LIID+ GK L EF LL L+ +PGK FSR Sbjct: 122 DKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSR 181 Query: 183 EQLLNHLYDDYRVVTD-RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 LL + ++ V D RT+D HI+ +R+KLE L+A Q +I GVGYR+ Sbjct: 182 YFLLKQFW-EFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRF 231 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 166 bits (421), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 138/222 (62%), Gaps = 3/222 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LIV+DE + L+ YL A+++ +G++ L ++ D+IL+D+M+P DG TL Sbjct: 6 VLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGFTL 65 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C IR SD+PI+ +TA+ +E D++ GL++G DDYI KP+SP E++AR++ I+RR + Sbjct: 66 CARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHNK 125 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 + + + PL+IDE + + G + LT EF LL L+ G+VFSRE LL ++ Sbjct: 126 QKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWGY 185 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 RT+D+HIK LR KL+ FI+ V+G+GY++E Sbjct: 186 DYTGNARTVDTHIKTLRMKLKQ---ASDFIQTVWGIGYKFEV 224 >UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostridium RepID=A7GA24_CLOBL Length = 225 Score = 166 bits (419), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 136/222 (61%), Gaps = 1/222 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+++DE K+ +++ YL Y + G + L + PDL++LDLMLP G + Sbjct: 5 ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDISGENV 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C IR+ S++PI+M+TAK E L G IG+DDYI KP+SP+++VA+V +L+R K Sbjct: 65 CERIRKESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKGN- 123 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 + + + LIID + + K + LT +E+++L L+ P K+FSRE+L++++ D Sbjct: 124 QCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELMDYISRD 183 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + DR ID+HIKN+R KL+ ++I+ + G+GYR+ Sbjct: 184 NICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 139/226 (61%), Gaps = 11/226 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L+V+D+ + +L+ Y + + GD VL + PD+++LD+MLPG DGL+ Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LCR +R IPI+M+TAK EE DR+LGLE+GADDY+ KP+SPRE+VAR+K +LRR + Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLD-----LTPAEFRLLKTLSHEPGKVFSREQLL 186 + P + +A R ++D +TP EF LL L+ P +VF+RE+LL Sbjct: 126 DPATNWQLKYPGL----EIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELL 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ RT+D HI+ LR KL SL E +++ V+GVGY++ Sbjct: 182 GAVWGYDYFGDQRTVDVHIRRLRTKLASLPHE--YLQTVWGVGYKF 225 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 166 bits (419), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 135/223 (60%), Gaps = 3/223 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LIV+D+ KL LL YL Y + + G+ ++ V+ + P +++LD+M+PG DGL + Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 R++R S++P++M+TAK E+ DR++GLE+GADDYI KP++PRE++AR+K +LRR K Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGPE 126 Query: 133 ELQQQDAE---SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + + +++ + G L+L+ EF+LLK L PG+ +R+ L+ + Sbjct: 127 NNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLMTSV 186 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 + DR+ID HI LR + +S I+ V+G GY + Sbjct: 187 WGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMF 229 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 92/224 (41%), Positives = 134/224 (59%), Gaps = 2/224 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+VEDEP + L D L Y + G R+ DLILLD+MLPG DGL Sbjct: 3 RILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDGLE 62 Query: 72 LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +CRE+RR PI+M+TAK E ++++GLEIGADDY+ KP+ +E+ AR+K +LRR Sbjct: 63 VCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRASG 122 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 +L+ + + +D R + +GK ++LTP EF+LL G+V SR+QL+ + Sbjct: 123 DTDLETC-SFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAATW 181 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + R +D+HI NLRRK+ AE ++R V G+GYR++ Sbjct: 182 GRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRFDG 225 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/230 (42%), Positives = 140/230 (60%), Gaps = 9/230 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVR---QTPPDLILLDLMLPGTDG 69 I++VEDE +L L+ LR + +I G L + Q PDLI+LDLMLP DG Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L +CR +R+ PI+M+TA+ E+DR+LGLE+GADDY+ KP+S RE+ ARV ILRR + Sbjct: 64 LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123 Query: 130 PQRELQQQDAESP------LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 R L + + + L ID + + RG+ + LT EF LL L+ PG+VFSR+ Sbjct: 124 MMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSRD 183 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 LL+ ++ + V DRT+D+HI LR+KL + I ++GVGY++E Sbjct: 184 YLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 141/240 (58%), Gaps = 21/240 (8%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+VEDE + +L+ L Y ++HGD+ + DLI+LDLMLPG DGL Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 72 LCREIRRFSD--IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR-RC 128 +CR+IR S IP++M+TAK +EI++++GLE+GADDY+ KP+SPRE++ARVK LR R Sbjct: 63 VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122 Query: 129 KPQRELQQQDAES----------------PLIIDEGRFQASWRGKMLDLTPAEFRLLKTL 172 K + + QD + PL I +++A + L LTP EF LL + Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182 Query: 173 SHEPGKVFSREQLLNHLYDDYRVVTD-RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 G+V +RE+LL ++ Y + D RT+D HI++LR+K+ + V G+GYR Sbjct: 183 VTNSGQVLTREKLLEKIW-GYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYR 241 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 98/231 (42%), Positives = 141/231 (61%), Gaps = 12/231 (5%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+V+DE + +LL L+ + Y + + G L R DL+LLD+MLP DGL Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQ--RAPEADLVLLDIMLPEVDGLE 59 Query: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 +CR+++ + S IPI+M+TAK EEIDR+LGLE+GADDY+ KP+S RE++ARVK +LRR Sbjct: 60 VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 Query: 129 ----KPQRELQQQDAE---SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 K RE ++++ L +D +QA K + LTP E+ LLK L PG+ FS Sbjct: 120 ASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFS 179 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 R++LL ++ RT+D HI++LR KL+ I V GVGYR+ Sbjct: 180 RDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230 >UniRef50_B3DXI2 Phosphate regulon transcriptional regulatory protein phoB n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DXI2_METI4 Length = 258 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 98/236 (41%), Positives = 144/236 (61%), Gaps = 7/236 (2%) Query: 2 TELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLD 61 T+ ID+ +IL+VEDE + L+ +L + + G + L R+ PDLI+LD Sbjct: 23 TDKGIDKRKKKILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKELPDLIVLD 82 Query: 62 LMLPGTDGLTLCREIRRFSD---IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVV 118 LM+P GL +C+ +++ D IPIV++TAK + DR+LGLE+GADDYI KP+SPRE++ Sbjct: 83 LMIPEFSGLDVCKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELI 142 Query: 119 ARVKTILRRCKPQRELQQQ-DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 R+++ILRR L +Q E + +D A ++ K ++LTP EFRLL TL G Sbjct: 143 LRIQSILRRRLEDNPLAEQIQQEDGIRLDPIDKVAYFKKKKIELTPIEFRLLSTLVEREG 202 Query: 178 KVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 V SREQLL ++ + V RTID+HI+ LR K L ++R V G+GYR++ Sbjct: 203 AVQSREQLLKEVWGYDKTVDTRTIDTHIRRLRDK---LGRASQYLRTVRGIGYRFK 255 >UniRef50_A4C4T0 Response regulator receiver domain protein (CheY-like) n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C4T0_9GAMM Length = 227 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 131/220 (59%), Gaps = 6/220 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIVED+ + Q + + RA + I GD V+ V+ PDLILLDLMLP DG+ Sbjct: 3 KILIVEDDLSIAQGIELFFRANQFDTLHIDDGDLVVNAVKHYQPDLILLDLMLPNKDGMA 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 C+ IR FSD+PIVM+TA +E+ +L GL++G DDYICKP+ EVV R K IL+R Q Sbjct: 63 CCQAIRLFSDVPIVMLTAIVEQQKKLQGLQLGIDDYICKPFDAMEVVLRAKAILKRSIGQ 122 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + + L ++ + ++ L+ +EF L + L ++FSR++++ Y Sbjct: 123 VQY------NTLALNADALEIKTPLGVVSLSHSEFSLFELLFINHERIFSRDKIIELAYP 176 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 + + DRTIDSHIKN+R+K + + I +VYG GYR Sbjct: 177 ELHDINDRTIDSHIKNIRKKFKVTLNAVAPIESVYGAGYR 216 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/237 (37%), Positives = 140/237 (59%), Gaps = 8/237 (3%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 N ILIVED+P + +L+D +R++ + + + G + + + DLI+LD MLPG D Sbjct: 11 NQAHILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGED 70 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G ++CR +R +PI+M+TA E+IDR+LGLE+GADDY+ KP++ RE++AR+K+ILRR Sbjct: 71 GFSICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRA 130 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWR------GKMLDLTPAEFRLLKTLSHEPGKVFSR 182 Q++A P++ R R G + +T AEF +L P KV +R Sbjct: 131 SYAH--HQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTR 188 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRI 239 EQLL+ + +R+ID+HI +R+K+E + +FI+ V GY + + R+ Sbjct: 189 EQLLSMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFASKVERL 245 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/234 (40%), Positives = 144/234 (61%), Gaps = 12/234 (5%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +L+VEDE K+ ++L +L ++ L +RQ DL++LD+M+PG DG T Sbjct: 7 VLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGWTT 66 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR---CK 129 CR+IR FS++PI+ +TA+ EE DR+LG E+GADDY+ KP+SPRE+V RVK +LRR Sbjct: 67 CRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSSTP 126 Query: 130 PQRE-LQQQDAESPL------IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 PQR+ Q+ E L + EGR +A +G+ L L+P E+ LL L+ G+V SR Sbjct: 127 PQRDKAQEMTPEKGLHFPELSLYPEGR-KAVVKGETLSLSPLEYDLLLYLAQNAGRVLSR 185 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLD-AEQSFIRAVYGVGYRWEAD 235 + LL+ ++ RT+D+H++ LR KL + A S++ V G GY++E + Sbjct: 186 DLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEVN 239 >UniRef50_B7IXR9 DNA-binding response regulator n=167 Tax=Bacilli RepID=B7IXR9_BACC2 Length = 225 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 130/221 (58%), Gaps = 5/221 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+DEP++ +LL YL Y + G++ + ++ +LLD+M+P DG Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C+ IR FS++PI+MVTA+ + +D + GL++GADDY+ KP+ E+ AR++ +LRR + Sbjct: 64 CKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEHK 123 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 ++Q ++ DE + AS + L LTP EF LL V SR+QL+ ++ Sbjct: 124 QIQYH----GIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL 179 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAE-QSFIRAVYGVGYRW 232 DRT+DSHI+NLR KL + ++ VYGVGYRW Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRW 220 >UniRef50_C7I0W4 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=C7I0W4_THIIN Length = 365 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/238 (41%), Positives = 148/238 (62%), Gaps = 13/238 (5%) Query: 9 NTP----RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML 64 N+P RIL+V+D+P L +L DYL +A L +HGD + + Q P ++LDLML Sbjct: 122 NSPAPSQRILVVDDDPGLRAMLRDYLTGNGFAVDLAAHGDAMRACLAQQMPHAVILDLML 181 Query: 65 PGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 PG DGL L RE+RR SD+PI+M++A+ EEIDR++GLE+GADDY+ KP+SPRE++AR++ + Sbjct: 182 PGEDGLALARELRRSSDLPILMLSARGEEIDRVIGLEVGADDYLPKPFSPRELLARLRAL 241 Query: 125 LRRCKP---------QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHE 175 LRR +P + +Q P ++D F+ G+ + L+ AEF LL+ + Sbjct: 242 LRRAQPTSAGDLPPASKPAEQAVRFGPFLLDAAAFRLLRDGQDVGLSVAEFTLLQAMVAH 301 Query: 176 PGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 P +V SR+QL++ L R DR+ID + LRRK+E A ++R + G GY + Sbjct: 302 PNRVLSRDQLIDWLKGYERDAFDRSIDVRVARLRRKIEDDPARPVYVRTIRGQGYLFN 359 >UniRef50_C6CSH8 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSH8_PAESJ Length = 240 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/232 (37%), Positives = 137/232 (59%), Gaps = 8/232 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L++ED+ + +L YL Y+ G++ L V++ PD++LLDLMLP DG+ Sbjct: 3 KVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDGMG 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C IR S +PI++++ K E +R+ L+ GADDY+CKP+S E+ ARV+ ++RR + Sbjct: 63 VCASIRERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQFS 122 Query: 132 RELQQQDAE--------SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + + +P+ +D R RGK+++ T +EF ++K PGKVFSRE Sbjct: 123 ATEAEAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFSRE 182 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +L+N + VTDR ID HI NLR+K+E E IR V+G GY++ D Sbjct: 183 ELINTIRGFDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYKYTTD 234 >UniRef50_B4WZT8 Response regulator receiver domain protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4WZT8_9GAMM Length = 225 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 141/221 (63%), Gaps = 3/221 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P +LIVEDEP++ + L+ L +A T ++ G Q L V DL++LD+ LP +G Sbjct: 2 PAVLIVEDEPRIAEPLMFALEREHFAVTHVTLGQQALDAVAGQAVDLVVLDVGLPDMNGF 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + +++R+ S++P++ +TA+ +E+DR+LGLE+G DDY+ KP+SPREVVAR++ IL+R P Sbjct: 62 DVLKQLRQHSELPVLFLTARQDEVDRILGLELGGDDYVTKPFSPREVVARIRAILKRLGP 121 Query: 131 QRELQQQDAESPLI-IDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + + ++ L +D+ + +R L LT +E+R+L T+ PG+VFSR QLL+ + Sbjct: 122 KSDADIDTNKTTLWQVDDSGLRVFFRHTELSLTRSEYRILTTMVQRPGQVFSRAQLLD-I 180 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 D +R++D+HIK LR KL L+ + I G+GY Sbjct: 181 CDSDEDSFERSVDTHIKTLRAKLRPLNGDH-LIVTRRGIGY 220 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 137/230 (59%), Gaps = 6/230 (2%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 ++ I IV+D P + +L+ YL Y T+++ G+++ + + PDLI+LD+M+PG D Sbjct: 3 SSQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGED 62 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 GL+LCR IR S+ P++ ++A+ E++D +LGLE+G DDY+ KP++PRE++ARVK +LRR Sbjct: 63 GLSLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRA 122 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWR------GKMLDLTPAEFRLLKTLSHEPGKVFSR 182 P E E + E R G + L+ EFRLL L +PG++ +R Sbjct: 123 TPASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVTR 182 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++LLN + DR+ID+ I LRRK+E +IR +G GY + Sbjct: 183 DELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAF 232 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 135/221 (61%), Gaps = 2/221 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+DEP L +L YL + G + L R PDL++LDLM+P G Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 R + S P++++TAKIE+ D++LGLE+GADDY+ KP++ RE++AR++ +LRR + Q Sbjct: 64 LRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ-QT 122 Query: 133 ELQQQDAESP-LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 L+ + +++D G+ +DLTP+EF +L TL PG+VFSR LL+ + Sbjct: 123 PLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVSG 182 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 D ++RTID HI+NLR K+E+ +I VYG+GYR+ Sbjct: 183 DAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRF 223 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 96/228 (42%), Positives = 139/228 (60%), Gaps = 6/228 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+ +DE K+ +L YL A + + +G +VL + P LI+LDLMLP G + Sbjct: 7 ILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIPGEEV 66 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C +R S +PI+M+TAK + DRL GL+IGADDY+ KP++P EVVARV+ ILRR Sbjct: 67 CMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRTMLDH 126 Query: 133 ELQQ--QDAESPLIIDEGRFQASWRGKM-LDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 L + + L+ID Q ++G + +LT E++LL LS P +VFSRE+L+ + Sbjct: 127 PLADRLEYRDGDLVID-ALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREELIERV 185 Query: 190 YD-DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 + D+R RTID+H+KNLR K+E +I+ VYG+GYR+ D Sbjct: 186 FGMDFRGDV-RTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGGDG 232 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 134/222 (60%), Gaps = 1/222 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P IL+V+DE + + YL A Y + G + L PDLI+LDLMLPG DG+ Sbjct: 3 PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGM 62 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + +R SD+ I+M+TA+ +EIDR+ GL +GADDY+ KP+SPRE+VARV+ ILRR + Sbjct: 63 EITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + + + ID +A G++L+LTP EF LL L+ +V SRE L+ ++ Sbjct: 123 KPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVW 182 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 TDR +D ++ +RRK+E+L E + IR GVGYR+ Sbjct: 183 GADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRF 223 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 135/226 (59%), Gaps = 2/226 (0%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 +E TPRILIVED+ +L L DYL + + G++ + + PDL++LD+MLPG Sbjct: 6 EEQTPRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPG 65 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 +DGLT+CRE+R PI+M+TA+ E++D++LGLE+GADDY+ KP PR ++AR++ +LR Sbjct: 66 SDGLTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLR 125 Query: 127 RCK--PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 R + P E+ Q+ L+ID G + G+++D T AE+ LL L+ G++ SRE Sbjct: 126 RSENAPSEEIPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSRED 185 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 + L DR+ID I +R K+ I+ V GY Sbjct: 186 IFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGY 231 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 163 bits (413), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 134/223 (60%), Gaps = 3/223 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P I +VED+ L +L+ YL+ + +I+ GD VL R+ PDL++LDLMLPG DGL Sbjct: 48 PNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGL 107 Query: 71 TLCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 LCR +R+ S +PI+M+TA+ + D++LGLE+GADDY+ KP PR ++ARV+T+LRR Sbjct: 108 QLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 167 Query: 130 PQRELQQQD--AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 D L ID SWRG+ ++L+ E+ LL L+ G+V +R+++L Sbjct: 168 VNEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQ 227 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 L TDR++D I LRRK + E I+ V+G GY Sbjct: 228 QLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGY 270 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 92/231 (39%), Positives = 138/231 (59%), Gaps = 9/231 (3%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 D+N IL+V+D+ ++ +LL DYLR A + + ++G ++ V + P +LI+LDLMLPG Sbjct: 3 DQN--HILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPG 60 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DGL+LCRE+R D+PI+M+TAK +DR++GLE+GADDY+ KP+ PRE++AR+K ILR Sbjct: 61 EDGLSLCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILR 120 Query: 127 RCKPQRELQQQDAESPLIIDEG-------RFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 R + R E I EG R S G ++ L +++ +L+ L P + Sbjct: 121 RTRNDRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRP 180 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 SR+ L+ H+Y DR+ID I LR +E+ + IR V GY Sbjct: 181 LSRDFLVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGY 231 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 97/231 (41%), Positives = 144/231 (62%), Gaps = 8/231 (3%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P ILIVED+ ++ QL+ + L + + + G+ L ++ PDLI+LDLMLP DGL Sbjct: 12 PNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71 Query: 71 TLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 +C IR+ D I+M+TAK EEIDR++GL GADDY+ KP+SPRE+VARV+ +LRR Sbjct: 72 EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131 Query: 128 CKPQRE-LQQQDAESPLIIDEGRFQASW----RGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 Q + + Q + +D + QAS R + L+LT EF LL T PG+V++R Sbjct: 132 QLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNR 191 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 QL+ L+ + +R +D+HI+ LR+K+E A +FI+ V G+GY++E Sbjct: 192 TQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 132/228 (57%), Gaps = 3/228 (1%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 N + L+VED+ + +L+ LRA +A + G + L P +LI+LDLMLP D Sbjct: 4 NARQALVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLD 63 Query: 69 GLTLCREIRRFS---DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G +CR +R + PI+M+TAK EE D++LGL++GADDY+ KP+ PRE +ARV +L Sbjct: 64 GWEICRRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALL 123 Query: 126 RRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 RR + L I +QA K +DLTP EF LL L+ G+ REQL Sbjct: 124 RRTTDYNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQL 183 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 L ++ + RTID HIK LR+K+ L+ +F++ V+GVGY+ E Sbjct: 184 LEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLE 231 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 136/229 (59%), Gaps = 5/229 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIV+DEP++ +L+ ++L+ A Y G L + DL++LD+M+P DG+T Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 72 LCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 RE+R R + P++++TA+ EE D+L GLE GADDY+ KP+SPRE+VARVK +L R P Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 131 QRELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + E L ID G+ + LTP EF LL L+ G SRE++L + Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 ++ DRT+D+H+K LR L + +I V+G+GY+++ DA R Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGKC---RGYIATVWGIGYKFDPDAAR 299 >UniRef50_C5CP31 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=C5CP31_VARPS Length = 249 Score = 163 bits (412), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 96/224 (42%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 PRIL+++D+ L L Y Y + L +R P D +LD+MLP DG Sbjct: 19 PRILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAKLRAGPFDAAILDVMLPEMDGF 78 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR--- 127 LCREIR+ SDIPIVM+TA+ E +DR++GLE+GADDY+ KP+ PRE+VARV+TILRR Sbjct: 79 ALCREIRKESDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILRRQRS 138 Query: 128 --CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 Q L ID R Q G+ ++LT EF LL L+ EPGKVFSR+ + Sbjct: 139 TPAAANGNGTQHRVFDGLSIDLDRRQVLRHGERVELTGTEFELLALLAAEPGKVFSRDDI 198 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVG 229 LN L + R +D + LR+KLE LD ++ A Y + Sbjct: 199 LNRLRGHEAELYTRAVDIVVSRLRKKLEPLDCIKTLRNAGYALA 242 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 135/229 (58%), Gaps = 5/229 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + +ILIV+DE ++ L+ YL+ +Y + L + ++ DL +LD+MLPGT G Sbjct: 2 SDKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 LT+C++IR PI+M+T K E+D++ GL IGADDYI KP+ P E++ARVK LRR K Sbjct: 62 LTICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYK 121 Query: 130 PQRELQQQD----AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 +++Q+ S L+I+ + K L LTP EF +L+ L G V S E L Sbjct: 122 KFSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELL 181 Query: 186 LNHLY-DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ D+Y ++ TI HI++LR K+ +I+ V+GVGY+ E Sbjct: 182 FHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIE 230 >UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphaproteobacteria RepID=Q0BQV4_GRABC Length = 253 Score = 162 bits (411), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 89/244 (36%), Positives = 139/244 (56%), Gaps = 19/244 (7%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 + P IL+VED+P + L++ LR + + + G ++ P + Q PDLIL+D+MLPG Sbjct: 16 NAGAPYILVVEDDPGMRVLIMRVLRENGFRTSAVRDGREMWPSIEQLMPDLILMDVMLPG 75 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 G LC+ +R+ S +PI+MV+A+ EE+DR+LGLE+GADDYI KP+ +E++ARV+ +LR Sbjct: 76 GSGFDLCKALRQSSQVPIIMVSARGEEMDRVLGLELGADDYIAKPFGKQELLARVRAVLR 135 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWR------------GKMLDLTPAEFRLLKTLSH 174 R + +E+ A W+ G ++DL+ AE+ LL + Sbjct: 136 RGPVNEPTAKGKSETISF-------AGWQIDMKRRELTDPSGAVVDLSGAEYDLLLSFLE 188 Query: 175 EPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 +V R++LL V+DR+ID + LRRK+ + E+ IR + GVGY + A Sbjct: 189 NAQRVIGRDRLLELSRTRLGDVSDRSIDVLVSRLRRKIGNRVGERPLIRTIRGVGYMFAA 248 Query: 235 DACR 238 D R Sbjct: 249 DVER 252 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 162 bits (411), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 136/229 (59%), Gaps = 18/229 (7%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+++DE KL +LL YL+ + +G + L R PDLILLD+M+P GL Sbjct: 5 ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLDF 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR---CK 129 R + ++ PI+++TAKIE+ D+++GLE+GADDYI KP++ REV+ARV+ +LRR + Sbjct: 65 MRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYKAQ 124 Query: 130 PQR------ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 PQ E+ + + L++ E + +DLTP+EF +L TL PG VFSR Sbjct: 125 PQADVLRIGEIVLERSACTLMVGE---------QTVDLTPSEFEILATLMASPGHVFSRL 175 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 LL+ +RTID HI+NLR K+E +I VYGVGYR+ Sbjct: 176 DLLDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRF 224 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 137/226 (60%), Gaps = 1/226 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL V+D+PK+ ++L L + S G++ L RQ+ PDL++LDLM+PG DG Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC-KP 130 ++++ ++PI++++A+ EE+DR++G +G DDY KP+SP E+ RVK +LRR +P Sbjct: 64 TYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGEP 123 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + L+ L +D + + ++LTP +F LL ++ P +VF++ LL+ ++ Sbjct: 124 KVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKIW 183 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 D D T+ HI+ LR K+E+ + +I+ V+G+GY++E + Sbjct: 184 DSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFEYEG 229 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 162 bits (410), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 8/226 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL++ED+ L LL L ++ + G + RQ PDLILLD+MLP +DGL Sbjct: 8 KILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGLD 67 Query: 72 LCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR-R 127 +C+ IR+ + IP++ +TA+ E DR++GLE+GA+DY+ KP+ RE++AR+K R + Sbjct: 68 ICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFRNQ 127 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 P R L+ E +D Q G L LT EFRLL+ L + PG VFSREQLLN Sbjct: 128 ATPARLLEAGGVE----LDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLLN 183 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ R +TDR +D ++ LR+K+E A I +V G GY +E Sbjct: 184 AVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFE 229 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 162 bits (410), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 93/239 (38%), Positives = 139/239 (58%), Gaps = 11/239 (4%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E+ P IL+VED L ++L+ L Y + G L +Q PDL++LD MLP Sbjct: 3 EHVPTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQL 62 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGL + R IR+ P++M+TA+ EE D ++GLE+GADDY+ KP+ RE++ARV+ +LRR Sbjct: 63 DGLEVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRR 122 Query: 128 CKPQRELQQQDAE--------SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 + ++L Q DA+ L++D + R + LDLTP EF +L L PG+ Sbjct: 123 DQRIQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRA 182 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 FSR LL+ ++ V DR++D+ + LR+KL I V+G+GYR +A+A R Sbjct: 183 FSRNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFG---DAIETVWGLGYRLQAEAPR 238 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 132/224 (58%), Gaps = 5/224 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+VEDE + +++ L + P D + + + PDLILLD MLPG G+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 72 LCREIRRFS---DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + ++R S DIP+VM+TA+ EE DR+ GLE GADDYI KP+SP+E+VAR+K ++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 P +++ L +D + + L++ P EF+LL P +V+SREQLLNH Sbjct: 124 SPM-AVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ V DRT+D HI+ LR+ LE ++ V G GYR+ Sbjct: 183 VWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP1_OCEIH Length = 227 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 136/229 (59%), Gaps = 8/229 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 T I +VED+ + ++ YL+ Y T++ + + PPD+ +LD+MLPG DG Sbjct: 2 TVHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 C++IR SD+PI++++AK EEID++LGLE+G DDY+ KP+SPRE++ARVK + +R Sbjct: 62 YEFCKKIRNESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRST 121 Query: 130 PQRELQQQDAE---SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R+ + ++ L++ + + + G+ + T E+ +L L+ P + FSRE+LL Sbjct: 122 SHRQDEIEEDRVKVDQLLVYKNERRVFFEGEEFETTTKEYDMLLLLAENPNRAFSREELL 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ + +DR +D IK +R+K+ ++ E V+G GYR D Sbjct: 182 MKIWGNDYFGSDRAVDDLIKRIRKKMGNIPLE-----TVWGFGYRLRKD 225 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 136/227 (59%), Gaps = 5/227 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILI +D + + + YL+ G + L PDL++LDLM+P G Sbjct: 6 KILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGTE 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+EIR+ S++PI+M+TAK EEIDR++GLEIGADDYI KP+SPREVV R+KTI RR Sbjct: 66 VCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVGNA 125 Query: 132 R---ELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 L ++ + ID +++ + +D+TP E ++L L+ G+V SRE++L+ Sbjct: 126 NIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEILD 185 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ R +D+ IK +R+K+ + E+ I+ VYG+GY++E Sbjct: 186 KVWGYDYFGDTRVVDTQIKRIRKKIPE-EGEKWSIKTVYGIGYKFEV 231 >UniRef50_C6CHY9 Two component transcriptional regulator, winged helix family n=37 Tax=Gammaproteobacteria RepID=C6CHY9_DICZE Length = 232 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 136/224 (60%), Gaps = 5/224 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+V+D+ +LG +L +YL A ++ + + G + + ++LD+MLP G+ Sbjct: 8 KILLVDDDAELGHMLCEYLTAEGFSTSQVMTGKEGVDGAMSDQYTAMILDIMLPDMSGID 67 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 + R++RR IPI+M+TAK + IDR++GLE+GADDY+ KP PRE+VAR++ +LRR + + Sbjct: 68 VLRQVRRNRSIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYEDK 127 Query: 132 RELQQQDAES----PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 E + +DA + L+I + WRGK DLT +EF LL+ L +V ++++L Sbjct: 128 AE-KSEDAGTINYGELVISPSTRSSEWRGKAFDLTASEFNLLELLIRSSERVVTKDELSE 186 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 R DR++D HI N+R+KL +LD I V VGYR Sbjct: 187 KCLGRRREAYDRSVDVHISNIRQKLAALDGCSLTIETVRSVGYR 230 >UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=18 Tax=Proteobacteria RepID=Q4ZUU7_PSEU2 Length = 259 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 136/229 (59%), Gaps = 10/229 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R LIV+D+ + +LL DYL + ++ G Q+ + D+++LDLMLPG DGL+ Sbjct: 31 RALIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDGLS 90 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LCR +R SDIPI+M+TA+ E DR++GLE+GADDY+ KP+ PRE+VAR++TILRR + + Sbjct: 91 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 150 Query: 132 RELQQQDAESPLIIDEGRFQASWR------GKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 R D + + D R + R G ++ L+ AEFRLL+ P +V SREQL Sbjct: 151 RS----DQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQL 206 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 L+ DR+ID + LR+KL I+ V G GY ++A Sbjct: 207 LDAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFDA 255 >UniRef50_A1VI78 Two component transcriptional regulator, winged helix family n=54 Tax=Bacteria RepID=A1VI78_POLNA Length = 282 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 138/243 (56%), Gaps = 21/243 (8%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 N PRIL+VEDE + L L +AP S Q L P L++LD+ LP + Sbjct: 31 NKPRILVVEDESGIADTLQYVLSTDGFAPVWCSTAGQALREFSAGLPALVILDIGLPDLN 90 Query: 69 GLTLCREIRRF---SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G L + ++ + +P++ +TA+ +EIDR++GLE+GADDYI KP+SPRE+VARV+ IL Sbjct: 91 GFELFKRLQALPGGAQVPMLFLTARSDEIDRVVGLELGADDYIAKPFSPRELVARVRGIL 150 Query: 126 RRCKPQR------------------ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFR 167 RR Q ++ + A +P +DE R Q + G++L+L+ E+ Sbjct: 151 RRSVRQPLAAPLPEPPQPASGATPMAVRMEAAATPFALDEERRQIRFYGRVLELSRYEYG 210 Query: 168 LLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYG 227 +L+ L PG+VF+R++L + ++ D DRTID+HIK LR KL+++ IR G Sbjct: 211 ILRLLVLRPGRVFTRDELFDQVWTDGSGSLDRTIDAHIKTLRAKLKAVAPHAEPIRTSRG 270 Query: 228 VGY 230 GY Sbjct: 271 SGY 273 >UniRef50_Q21BK9 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q21BK9_RHOPB Length = 242 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 131/222 (59%), Gaps = 4/222 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 I IV+DEP + L+ Y + A +A DQ+ + + D ILLD+ LP DGLTL Sbjct: 14 IAIVDDEPLIQSTLVSYFQNAGFAVRSAETADQLRRLMARERIDFILLDIRLPDGDGLTL 73 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK--- 129 R+IR SD+P++++T++ EE DR++GLE+GADDY+ KP+SPREV+ARVKT+LRR + Sbjct: 74 MRDIRADSDVPVILITSRAEEADRIIGLELGADDYVTKPFSPREVLARVKTVLRRTRAVA 133 Query: 130 -PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 P R + + + E S G+ + LT AEF LL L PG++ SR LL+ Sbjct: 134 DPGRGKRLRRFAGWCLDLENHRLTSASGEPMRLTSAEFELLAALVRHPGRIMSRNDLLDV 193 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 + DRT+D + LRRK+E+ + I YG+GY Sbjct: 194 MSSREWDSNDRTVDVLVGRLRRKIEADPGKPQIIVTEYGLGY 235 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 141/230 (61%), Gaps = 8/230 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIV+DE + +L+ L+ Y + G++ L ++ PDL++LDLMLPG DG Sbjct: 5 KILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDGFE 64 Query: 72 LCREIRRFS---DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL-RR 127 + R IR + +IPIVM+TAK EE D + GLEIGA+DYI KP+SPRE+VAR++ IL RR Sbjct: 65 VTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRRR 124 Query: 128 CKPQRELQQQDA-ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + ++ Q PL +D GR + LDLT +EF++L L + G VF+R Q++ Sbjct: 125 TRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTRGQIV 184 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 + ++ + VT+R++D I LR+KL FI V GVGYR+ +A Sbjct: 185 DAVHGENYAVTERSVDVTIAGLRKKLGPC---ADFIETVRGVGYRFREEA 231 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/229 (40%), Positives = 137/229 (59%), Gaps = 9/229 (3%) Query: 8 ENTP---RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML 64 +N P R+L+V+D+ L ++L LR Y P +S G++ + +QT PD++LLDLML Sbjct: 10 QNGPSRGRVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLML 69 Query: 65 PGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 PG +GL +C++IR S +PIVM+TAK + ID + GLE GADDY+ KP+ P E+VARV+ Sbjct: 70 PGRNGLQICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQ 129 Query: 125 LRRCKPQR--ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 LRR + + L D + ID Q + G + LTP EF LL L+ +P +VF+R Sbjct: 130 LRRGETGQAENLSIGDVQ----IDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTR 185 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 E LL ++ R ++ H++ LR K+E + + V GVGY+ Sbjct: 186 ELLLEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_B4RCQ3 Response regulator n=3 Tax=Alphaproteobacteria RepID=B4RCQ3_PHEZH Length = 251 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 136/228 (59%), Gaps = 13/228 (5%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P++L+V+D+P + +LL+ L A + + G+ L V + PDL++LD+ +P DGL Sbjct: 21 PQVLVVDDDPHIRELLVFALEKARLSARVAEDGEAALAAVAEQAPDLVILDINMPRLDGL 80 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +CR +R D+PI+ ++++ +EIDR+LG+E+G DDY+ KP+SPREV ARV+ ILRR + Sbjct: 81 EVCRRLRAQGDLPILFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVTARVQAILRRVRG 140 Query: 131 QRELQQQDAESPLIIDEGR-------FQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + E P ++ GR + A W LT EF++L+ L P +VFSR+ Sbjct: 141 RAE-----PRGPGVLRHGRLSLDPEAWTARWDEVEAPLTVTEFQILRVLMGAPARVFSRD 195 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 +++ L+ +TDRTIDSHI+NLR K + GVGYR Sbjct: 196 AIIDRLHGPGFAITDRTIDSHIRNLRAKFARAGG-HDVVETRAGVGYR 242 >UniRef50_B0SW50 Two component transcriptional regulator, winged helix family n=12 Tax=Proteobacteria RepID=B0SW50_CAUSK Length = 243 Score = 160 bits (405), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 135/226 (59%), Gaps = 5/226 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIV+D+P + QLL+ L + G+ L V + PDL++LD+ +P DGL + Sbjct: 8 ILIVDDDPHIRQLLVFALAKVGLETREAADGEAALAAVAERAPDLVVLDINMPRLDGLEV 67 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR +R D+PI+ ++++ +EIDR+LG+E+GADDY+ KP+SPREVVARV+ ILRR + Sbjct: 68 CRRLRAQGDLPILFLSSRDDEIDRVLGIELGADDYVVKPFSPREVVARVQAILRRTGAKA 127 Query: 133 -ELQQQDA---ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 E D L +D + A W + LT EF +LKTL+ P KVFSR+ +++ Sbjct: 128 GEAAPADGLIVRGRLTLDPEAWSARWAEAEVSLTVTEFTILKTLAATPTKVFSRDAIIDR 187 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 L VTDRTIDSH++NLR K + I G+GYR A Sbjct: 188 LRGPGFAVTDRTIDSHVRNLRAKFAGVGG-HDVIETRAGIGYRLGA 232 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 160 bits (405), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 82/226 (36%), Positives = 134/226 (59%), Gaps = 5/226 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+LI +DE ++ LL YL Y G++ L +L++LDLM+P DG+ Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGIE 64 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR---C 128 +CR +R ++IPI+M+TAK +E+D+++GL IGADDYI KP+S EV+AR+K ++RR Sbjct: 65 VCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLVL 124 Query: 129 KPQRELQQQD--AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 Q++ L ID ++ + K + LT E LLK + P +VF++ QL Sbjct: 125 GSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQLF 184 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +++D + D T+ HI+ LR+K+E+ + FI+ V+G+GY++ Sbjct: 185 RNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 142/229 (62%), Gaps = 8/229 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP-DLILLDLMLPGTDGL 70 R+LIVED+P + ++ L + G+ L + + P DL+LLD+MLPG DG+ Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 71 TLCREIRRFSD----IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 ++CRE+R +P+VM+TA+ +E ++GLE+GADDYI KP+SPR++ +RV+ LR Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 127 R--CKPQRELQQQDAESP-LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 R Q +Q+ E P L ID R + + RG+ ++LT EF +L L+ PG+V+SRE Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 Q+++HL+ R+ D HI++LR+K+E +I+ V G+GYR+ Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 141/232 (60%), Gaps = 24/232 (10%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+LI++D+ +L LL +YLR + +H L ++ PPDL++LD+MLP TDGL Sbjct: 17 RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CRE+R S IPI+M+TA+ + DR++GLE+GADDY+ KP+ PRE+VAR++ +LRR Sbjct: 77 VCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRG--- 133 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKM-------LDLTPAEFRLLKTLSHEPGKVFSREQ 184 + DAE+ + G + +W + L+LT AEF LL L+ G+V SR++ Sbjct: 134 ---TRDDAEA---LRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDR 187 Query: 185 LLNHL----YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +L+ +D Y DR+ID + LR+KL +FIR V GVGY + Sbjct: 188 ILDGTRGIDWDAY----DRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSF 235 >UniRef50_C6WIA6 Two component transcriptional regulator, winged helix family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WIA6_ACTMD Length = 244 Score = 160 bits (404), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 130/223 (58%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 +T ++L+VED ++ ++ L A + GD L VRQ P+++LLDL +PG D Sbjct: 16 STSKVLVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELVRQWDPEVVLLDLNIPGPD 75 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 GL +CR +R+FS ++M+TA+ +E+D+L+GL GADDY+ KP+SPRE+VARV T+LRR Sbjct: 76 GLEVCRRLRQFSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRRP 135 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + + P+ +D G + T EF LL ++ +V +R+QL Sbjct: 136 RIPAARDSRRVVGPVEVDLDARSVEVNGNHVATTKIEFELLAAITENTRQVRTRDQLRRR 195 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 + + + D +D H+ NLRRKL + A + FI V GVGYR Sbjct: 196 AWGEEWLADDHAVDVHVSNLRRKLVAAGAPRDFIATVRGVGYR 238 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 135/232 (58%), Gaps = 1/232 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E ++L+VEDE + + + L A Y G+ L + + PDL++LDLMLPG Sbjct: 3 EKKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGI 62 Query: 68 DGLTLCREIRRFSDIP-IVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DGL +C+ IR P I+++TAK ++ D+++GLE+GADDY+ KP++P E++AR+K +LR Sbjct: 63 DGLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLR 122 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R + L +D + + ++LTP E+ LLK PGK RE++L Sbjct: 123 RRDRYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEML 182 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 N ++ + +T+D HI+ LR K+E ++ +I+ ++G GYRW+ + R Sbjct: 183 NGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPEMVR 234 >UniRef50_B0TF57 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TF57_HELMI Length = 277 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 140/265 (52%), Gaps = 46/265 (17%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RI I +DEP + +L+ YL + ++GD +L Q PDL++LD+M+PGT+GL Sbjct: 3 RIFIADDEPPILELIRRYLEKEGFEAVTFTNGDDLLAAYAQQVPDLVILDIMMPGTNGLD 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+ +RR SD+PI++V+AK +EIDR+LGLE+G DDY+ KP+SPRE+V RVK ILRR Sbjct: 63 VCKRLRRDSDVPIIIVSAKDDEIDRILGLELGGDDYLSKPFSPRELVVRVKNILRRVWHT 122 Query: 132 RELQQQDA-----------ESPLIIDE-----GRFQASWRGKM----------------- 158 R D SP++ D G +A+ Sbjct: 123 RAGNSADGGRHRGNEPTARSSPVVSDALQSAIGSSEAAQAATGTPTTVAPGFACHDLRID 182 Query: 159 ------------LDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIK 206 +DLT EF LL L+ KVF+REQLL+ ++ + R++D +K Sbjct: 183 LDERRITGPNGEIDLTAKEFDLLSFLAKHKKKVFTREQLLDQIWGYHFAGNLRSVDDLVK 242 Query: 207 NLRRKLESLDAEQSFIRAVYGVGYR 231 LR+KL + I+ V+G GY+ Sbjct: 243 RLRKKLAQSGSTLE-IKTVWGYGYK 266 >UniRef50_C7I0A5 Two component transcriptional regulator PhoB, winged helix family n=1 Tax=Thiomonas intermedia K12 RepID=C7I0A5_THIIN Length = 244 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 136/235 (57%), Gaps = 10/235 (4%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + ILIVEDEP + +LL L+ A + P ++ L +R PD++L+D MLPG G Sbjct: 4 SSNILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSG 63 Query: 70 LTLCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 + L R +R R IPI+M+TA+ EE D++ GL+ GADDYI KP+SP+E++AR++ +LR Sbjct: 64 VALARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLR 123 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKM-----LDLTPAEFRLLKTLSHEPGKVFS 181 R PQ +Q L +D +A ++ + L P EF+LL L P +V S Sbjct: 124 RRAPQLTAEQVQIGG-LSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHS 182 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 R LL+ ++ D+ + +RT+D HIK LR L + + + V G GYR+ A A Sbjct: 183 RGALLDKVWGDHVFIEERTVDVHIKRLREALSPVQCAE-MVETVRGAGYRFTAQA 236 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 159 bits (403), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 131/231 (56%), Gaps = 16/231 (6%) Query: 14 LIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLC 73 ++VEDEP + + LRA Y G + + PD+++LD+MLPG DGL +C Sbjct: 21 VVVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVC 80 Query: 74 REIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRE 133 R ++ +P++M+TA+ +E D+L+GL +GADDY+ KP+S RE+VARV ++RR + R Sbjct: 81 RRVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARA 140 Query: 134 LQQQDAESP-----------LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 L A S L ID + + G + LTP EF LL L+ P V +R Sbjct: 141 LVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTR 200 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 E+LL ++D RT+DSH+K LRRKL + +R V+GVGY +E Sbjct: 201 EKLLEEVWDWADASGTRTVDSHVKALRRKLGA-----DLVRTVHGVGYAFE 246 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 134/230 (58%), Gaps = 5/230 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+L+V+D+ + +++ YLR A + + G L TPPDL++LDLMLPG DG+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK-- 129 + R +R +P++M+TA+ +E DR+ GLEIGADDY+ KP+SPRE+ RV+++LRR Sbjct: 117 VFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANET 176 Query: 130 -PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 P E A + L++D A+ G L LT EF LL L PG+ F+R +LL H Sbjct: 177 VPGAEAGVLRAGT-LVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 ++ + T+ HI+ LR K+E + V+GVGYR++ R Sbjct: 236 VW-GWSYGDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDPGTPR 284 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 95/234 (40%), Positives = 132/234 (56%), Gaps = 8/234 (3%) Query: 4 LPIDENTP-RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDL 62 +P P R+L+V+DE L Q++ YL A + G Q + R+ PD+++LDL Sbjct: 33 IPTTATPPGRVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDL 92 Query: 63 MLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVK 122 LP DGL +CR IR FSD I+M+TA+ E D++ GL +GADDYI KP+S RE+V RV Sbjct: 93 GLPELDGLEVCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVH 152 Query: 123 TILRRCKPQRELQQQDAESPLII-----DEGRFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 +LRR P+ +PLI+ D Q ++LT EF LL L+ PG Sbjct: 153 AVLRR--PRTSTTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPG 210 Query: 178 KVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 +V +R L+ ++D V +R +D HI NLRRKL + + FI V GVGYR Sbjct: 211 QVLTRHDLVTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 159 bits (402), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 137/233 (58%), Gaps = 7/233 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIV+D+ ++ +LL +YL ++ D + + + +L++LD+MLPGTDGLTL Sbjct: 35 ILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPGTDGLTL 94 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 REIR S IP++M+TA+ DR++GLE GADDY+ KP+ PRE+VAR+ T+LRR + + Sbjct: 95 SREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLRRSQGAK 154 Query: 133 ELQQQDAESPLIIDEG-------RFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 E+ A S ++ +G R S G ++ L+ AEFRLL T P ++FSR+QL Sbjct: 155 EVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRRLFSRDQL 214 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 + +R+ID + LR+KL E S I+ V G GY + + + Sbjct: 215 MEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMFNVQSVQ 267 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 95/224 (42%), Positives = 132/224 (58%), Gaps = 8/224 (3%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQV--LPYVRQTPPDLILLDLMLPGTD 68 P +L+V+DEP++ +L+ YL A T++ GD + L VR PDL+LLD+M+P D Sbjct: 7 PVVLVVDDEPRMRELIRLYLAAEC---TVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLD 63 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G + IR S +P++M+TA+ DR+ GL +GADDYI KP+ RE+ ARV+ +LRR Sbjct: 64 GWQTLQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRS 123 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 Q E L I A + G+ L LTP EF LL L+ PG+VFSRE+LL+ Sbjct: 124 AGQVEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDR 183 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ RT+D+HIKNLR KL I V+GVGYR+ Sbjct: 184 IWGPDFQGDARTVDAHIKNLRDKLGE---GAGLILTVWGVGYRF 224 >UniRef50_D2R5T3 Two component transcriptional regulator, winged helix family n=6 Tax=Planctomycetaceae RepID=D2R5T3_9PLAN Length = 236 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 133/224 (59%), Gaps = 6/224 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L++ED+ L ++L L+ A Y S G L + PD++LLDLMLP DGL Sbjct: 5 KVLVIEDDRSLAEVLSYNLKQAGYEVLTASDGQDGLLQAQLKTPDIVLLDLMLPVIDGLD 64 Query: 72 LCREIRRFS---DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 +CR +R S D+ I+M+TAK EE D L+G +GADDY+ KP+S + ++ R+K + RR Sbjct: 65 VCRRLRADSSMRDLLIIMLTAKAEETDELVGFSLGADDYVAKPFSVKVLLERMKALRRRR 124 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + ++ + + +D R QA GK L LT +EFRLL TL +PG+VF R +L++ Sbjct: 125 SGEATPEEVTSRLGVTVDRRRHQAMADGKPLQLTRSEFRLLDTLIRQPGRVFHRAELIDA 184 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 + +V +RTID HI+ LRRKL I V GVGYR+ Sbjct: 185 ALGEDTMVMERTIDVHIRALRRKLGQY---ADVIETVRGVGYRY 225 >UniRef50_C0DY83 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DY83_EIKCO Length = 226 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 133/224 (59%), Gaps = 1/224 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 P ILI+EDE ++ +L+ L A + + +Q + + DL+LLD+ LP TDG Sbjct: 2 NPHILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDTDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L + +R P++M+TA+ EE DR+LGLE+GADDYI KP+SPRE+VARVK +LRR + Sbjct: 62 FELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQ 121 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 R + ++ D +G+ L LT E+RLL+TL H PG+VFSRE+LL + Sbjct: 122 -TRPAAKTESVPVWHDDVPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAM 180 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + R TI++HI+ LR KL + IR +G+GY + Sbjct: 181 FGGNRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSFN 224 >UniRef50_A8VQC0 Response regulator receiver protein n=2 Tax=Bacillaceae RepID=A8VQC0_9BACI Length = 240 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/234 (38%), Positives = 131/234 (55%), Gaps = 1/234 (0%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 MT +E I+IVEDE + ++L Y + + ++ G QV+ PDL+LL Sbjct: 6 MTADEGEETVTTIMIVEDEWAIARVLDAYCKKRGWHTVMVEDGHQVMAVFLDASPDLVLL 65 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 D+MLPG DG ++ EIR SD P+VM+TA E DRL G + GADDYI KP+ EVVAR Sbjct: 66 DVMLPGRDGWSILSEIRERSDCPVVMLTALDELDDRLKGFDGGADDYIAKPFHGEEVVAR 125 Query: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 + +L+R +P E L I +G + GK ++LTP + LL L+ P +V+ Sbjct: 126 IAAVLKR-QPSEEKTDAMEFGDLEIRDGERRVYLSGKQVELTPKDTALLIHLAKHPNRVW 184 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 SR++L+ H++ +DR +D +K +R+ L D E IR + G GY + A Sbjct: 185 SRDELIEHVWGWDYTGSDRAVDLAVKRIRQALRKWDDEHGGIRTIRGEGYSFHA 238 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 138/226 (61%), Gaps = 7/226 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP-DLILLDLMLPGTDGL 70 ++L++EDE + +L YL Y +G + L + +ILLD+MLP G Sbjct: 4 KVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDISGW 63 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +L + IR S +P++M+TA+ EE D+LLG E+GADDY+ KP+SPREVVARVK IL R Sbjct: 64 SLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYG 123 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 ++ + + + +++D + + GK ++LTP EF LLK L GKV SRE+ LN ++ Sbjct: 124 SQDDGKTEYQG-IVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVW 182 Query: 191 DDYRVVTD-RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 Y D RT+D+HIK LR E L +++ I+ V+G+GY+ E D Sbjct: 183 -GYDFYGDLRTVDTHIKQLR---EKLGEKRNLIKTVWGIGYKLEGD 224 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 134/227 (59%), Gaps = 2/227 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E R+L+V+D+ + ++ YL+ A YA L G+ L + PDL++LDLMLPG Sbjct: 6 EAAARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGV 65 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 GL +CR +R ++P+VM+TA EE DR++GLE GADDY+ KP+SPRE+V RV +ILRR Sbjct: 66 GGLEVCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRR 125 Query: 128 CKPQRELQQQD-AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + + + + L +D + + G L LT EF LL L PG+ FSR +LL Sbjct: 126 ARTSQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELL 185 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ + T+ H++ LR K+E A I V+GVGYR++ Sbjct: 186 EQVW-GWSFGDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYD 231 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 138/228 (60%), Gaps = 9/228 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+L+V+DE + + L L G++ L YVR D+ILLD+MLP DGL+ Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C++IR FS++PI+M+TAK +++D++LGL+ GADDYI KP++ EV AR+K ILRR Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRR---N 129 Query: 132 RELQQQDAESPLI------IDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + Q++ +S +I ID K ++LT EF LL+ L+ PGKV+SR+ L Sbjct: 130 SSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNL 189 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 L ++ RT+D H++ LR K+E+ +E ++ +GVGY + Sbjct: 190 LKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFN 237 >UniRef50_B4U9Z2 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9Z2_HYDS0 Length = 229 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 136/223 (60%), Gaps = 7/223 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 + +VED+ L ++L L + ++G++ + QT P++I+LD+MLPG DG+ + Sbjct: 6 VYVVEDDIDLAEILTFNLENEGFEVKHFTNGNEFFKTMEQTIPNIIILDIMLPGYDGVRI 65 Query: 73 CREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 + +R+ + DIPI+ +TAK EE D++ G GADDYI KP+S +E++AR++ +L R K Sbjct: 66 AKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAVLNRYK 125 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + E+ L +DE + + + GK ++LT EFR+LK L K+ +R++++N L Sbjct: 126 KTITTNKLKVEN-LELDEDKMEVTLDGKPINLTKTEFRILKYLLENIDKIMTRDKIINML 184 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 + + DRT+D HIK+LR KL +IR + GVGY++ Sbjct: 185 WSYGTDINDRTVDVHIKHLRDKLGDF---GKYIRTIRGVGYKF 224 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 136/228 (59%), Gaps = 8/228 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 I ++ED+ + +LL + + +G +++Q PD+++LDLM+P DGL Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 73 CREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 C+ +R IP++M+TAK EID+++GLE+GADDY+ KP+S RE++ARVK +LRR K Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 130 PQR--ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + L I +F+ + +G+ + LT +F+LL L + GKV SR+ ++ Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 H++ + V DRTID HIK LR E L + I+ + GVGY+WE + Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLR---ELLKEYGNCIKTIRGVGYKWECE 228 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 143/237 (60%), Gaps = 11/237 (4%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 EN ILIV+D+ ++ +LL YL +L ++G Q+ + Q DLI+LDLMLPG Sbjct: 2 ENNDHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGE 61 Query: 68 DGLTLCREIR--RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DGLTLCRE+R ++ IP++M+TA+ EE DR++GLE+GADDY+ KP++ RE+ AR++++L Sbjct: 62 DGLTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVL 121 Query: 126 RRCK--PQRELQQQDAESPLIIDEGRFQASWR------GKMLDLTPAEFRLLKTLSHEPG 177 RR + P LQ + L+ + + + R G M+ L+ AE+RLL+ P Sbjct: 122 RRARMLPA-NLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQ 180 Query: 178 KVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 +V +R+QLLN DR+ID I LR++L+ E +I+ + GY + A Sbjct: 181 RVLTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSA 237 >UniRef50_A3ERN0 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERN0_9BACT Length = 231 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 140/225 (62%), Gaps = 7/225 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL++EDE + LL Y + T +G + L R PDLI+LDLMLPG DGL+ Sbjct: 4 KILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLDGLS 63 Query: 72 LCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + R +++ + IP+V++TAK +E DR++GLE+GADDYI KP++P+E++AR+K ILRR Sbjct: 64 VNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRRT 123 Query: 129 KPQ-RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + + ++ + + +++D R +A +LDLT EF LL L G+V R+ LL+ Sbjct: 124 EQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQMLLD 183 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ TDRT+D HI+ LR+KL Q ++ V +GY++ Sbjct: 184 LVWGADYEGTDRTVDVHIRRLRKKLGDY---QDRVQTVKQIGYKF 225 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 138/227 (60%), Gaps = 9/227 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++LIV+DE K+ +++ YL G+Q L + PDLI+LDLMLP G Sbjct: 6 KVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGEE 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C +R+ S +PI+M+TAKI+E + GL +GADDYI KP+SPRE++AR+ I RR + Sbjct: 66 ICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRLNEE 125 Query: 132 -----RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 E+ D + L+ID + + G+ + LT ++++L TL P K F+RE+L+ Sbjct: 126 VVPLSNEISFNDND--LVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTREELI 183 Query: 187 N-HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 + L DDY DR +D+H+KN+R+K+E+ + +I V+G GYR+ Sbjct: 184 STALGDDYDGY-DRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRF 229 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 136/222 (61%), Gaps = 4/222 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LI+ED+P + +L+ Y+ Y + G+ L +T PD I LD+MLP DG L Sbjct: 8 VLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWEL 67 Query: 73 CREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 C+EIR + IPI+M+T K E D++ GL+IGADDY+ KP+ P E+VAR+K ++RR Sbjct: 68 CQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADLL 127 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + Q + L++D+ ++A+ K + + P E LL L+ P +VF+R+QLL+ ++ Sbjct: 128 NDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIW- 186 Query: 192 DYRVVTD-RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 Y D RTID HIK +R KL DA+ + I+ + GVGY++ Sbjct: 187 GYAFEGDPRTIDVHIKRIREKLTEADAKWT-IKTIRGVGYKF 227 >UniRef50_Q2BDB2 Two-component response regulator n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BDB2_9BACI Length = 226 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 133/222 (59%), Gaps = 2/222 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+DE ++ LL +L Y G + + V++T D++LLD+M+P DGL Sbjct: 4 ILLVDDEERMKNLLALFLEPHGYKCLRAKDGYEAIQLVKRTHVDMLLLDIMMPELDGLET 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR+IR FS++PI+M+TA+ + +D + G + GADDY+ KP+ R ++ARV + RR + Q Sbjct: 64 CRKIREFSNVPIIMLTARTDNLDMIKGFDCGADDYVTKPFDERVLLARVNALFRRQQIQH 123 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 ++ +D + ++GK + LT EF LL+TL P +V++R+QLL +D Sbjct: 124 GAKEV-IRGDFKLDMDSYTLKYKGKAVSLTLKEFLLLETLMKHPERVYTRDQLLAVAWDI 182 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAE-QSFIRAVYGVGYRWE 233 RT+DSH++NLR KL+ + + V+G+GY+W+ Sbjct: 183 NASTEIRTVDSHVRNLREKLKGASFPIEEHLATVWGIGYQWK 224 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 136/235 (57%), Gaps = 9/235 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + ILIV+DE ++ +LL YL S+ S+G + + ILLDLMLP DG Sbjct: 2 SNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 + + ++R PI+M+TAK EE +R+ G E GADDYI KP+SPREVV RVK +LRR + Sbjct: 62 IQVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQ 121 Query: 130 P----QRELQQQDA--ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 Q E +D L ID + + ++LTP E+ LL L+ P KVF RE Sbjct: 122 STTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDRE 181 Query: 184 QLLNHLYDDYRVVTD-RTIDSHIKNLRRKLESLDAEQS-FIRAVYGVGYRWEADA 236 QLL ++ Y D RT+D+H+K LR KL + +E + I+ V+GVGY++E + Sbjct: 182 QLLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKS 235 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 136/226 (60%), Gaps = 3/226 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++LIV+D+ L ++ L ++ + G YV + + ++LD+MLP DG Sbjct: 5 QVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWE 64 Query: 72 LCREIRRF---SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 +C +IR S +PI+M+TAK+EE D+++GL++GADDY+ KP+SPRE+VARV+ ++RR Sbjct: 65 VCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRD 124 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + ++ + + L +D ++ + +DL P EF LL L P +VF+RE++L Sbjct: 125 QDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEK 184 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ RT+D H+K +R+KLE S I+ V+GVGY++E Sbjct: 185 IWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEV 230 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 134/229 (58%), Gaps = 5/229 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIVED+ ++ LL +++ + ++ G L + DLILLDL +P +G+ Sbjct: 9 QILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVE 68 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CRE+R+ + PI+MVTAK EEID++LGLEIGADDYI KP+S RE+ AR K ++RR Sbjct: 69 VCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDAA 128 Query: 132 RELQQQDAESPLIIDEGRFQASWR-----GKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + L + + R GK +DL+P EF LL L++ PG+ +SR +LL Sbjct: 129 NQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSELL 188 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + ++ + T++SHI LR K+E +I +G+GYR+ D Sbjct: 189 DVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/224 (38%), Positives = 132/224 (58%), Gaps = 2/224 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LIVEDE L L LR + T+++ G L + D++LLDLMLPG G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK-PQ 131 C+++R S +P++MVTA+ EID+++GLE+GADDY+ KPYS RE++AR++ +LRR Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDD 123 Query: 132 RELQQQDAES-PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 E+ ES P+ +D R S G + L EF LL+ L G+V +R QL++ ++ Sbjct: 124 SEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVW 183 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 V +T+D H+K LR K+E+ A + V G+GY+ E Sbjct: 184 GADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 132/223 (59%), Gaps = 5/223 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+DEP + +L L A YA Q + PDLILLD MLPGT G+ L Sbjct: 6 ILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGIEL 65 Query: 73 CREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 R ++R S+IPI+M+TAK EE +++ GLE+GADDYI KP+SPRE+VAR+K +LRR Sbjct: 66 ARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTD 125 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + E L +D + + + + P E+RLL+ +V++R QLL+H+ Sbjct: 126 SMGISEPIQVEG-LCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDHV 184 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 + V +RT+D HI+ LR+ L SL+ FI+ V G GYR+ Sbjct: 185 WGGNVYVEERTVDVHIRRLRKAL-SLEGHDRFIQTVRGAGYRF 226 >UniRef50_A3Y9U3 Response regulator protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y9U3_9GAMM Length = 243 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 140/235 (59%), Gaps = 18/235 (7%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPY--VRQTPPDLILLDLMLPGTDG 69 +IL+++D+ L LL YL A Y L+S L Y + + P I+LD+MLP DG Sbjct: 4 KILLIDDDESLADLLKQYL--ARYDMQLVSANCPSLGYQLLEKEQPQAIILDVMLPEEDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C+ +RR SDIPI+M+TA+ + +DR++GLEIGADDY+ KP+ PRE+VAR++TILRR + Sbjct: 62 FEVCKHVRRKSDIPIIMLTARGDVMDRVIGLEIGADDYLGKPFEPRELVARLQTILRRLE 121 Query: 130 PQRELQQQ-DAESP--------LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 Q + + Q DA S + I+ R Q + LDLT E+RLL ++ P VF Sbjct: 122 KQSQKENQTDASSAEHILTFKGMGINTERQQVKLFDQRLDLTTTEYRLLLLMAKSPQTVF 181 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQ-----SFIRAVYGVGY 230 SR+ +LNHL + R++D I LR+K ++ + FI+ V+G GY Sbjct: 182 SRDDILNHLKGVEIELFSRSVDIAISRLRQKFKAATPDDHHVSVDFIKTVWGAGY 236 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/222 (40%), Positives = 130/222 (58%), Gaps = 6/222 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+V+D+ L +++ LR + P + G Q L R + PDL+LLDLMLPG+DG+ Sbjct: 33 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDGIE 92 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC--K 129 +CR+IR SD+PIVM+TAK + D + GLE GADDY+ KP+ P E+VARV+ LR K Sbjct: 93 VCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQK 152 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 L+ D + ID + G+ + LTP EF LL L+ +P +VF+RE LL + Sbjct: 153 APETLRIAD----VTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQV 208 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 + R ++ H++ LR K+E + V GVGY+ Sbjct: 209 WGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 127/224 (56%), Gaps = 2/224 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+DE + + LR A Y +GD L R DL +LD+M+PG +G L Sbjct: 8 ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYEL 67 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR +R ++ P++ ++A+ E+D+++GLEIGADDY+ KP+ RE++ARV+ +LRR + Sbjct: 68 CRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQMDA 127 Query: 133 ELQQQDA--ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 E ++ + +DE R A +DLTP EF LL L GKV SRE LL + Sbjct: 128 EPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLREAW 187 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + +T+D+HIK LR KL + + I V G GYR+ A Sbjct: 188 GWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_B3E8G4 Two component transcriptional regulator, winged helix family n=4 Tax=Desulfuromonadales RepID=B3E8G4_GEOLS Length = 233 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 136/234 (58%), Gaps = 16/234 (6%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDL---ILLDLMLPGT 67 P ILIVED+ K+ +++ YL A + + H D + + +L ++LDL LP Sbjct: 3 PPILIVEDDLKIARIIKAYLEGADFR---VIHADTARAALEKAEAELPLAVILDLGLPDK 59 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 G LC+E++ P++M+TAK E +R+ G +GADDY+ KP SPRE+V RVK +L+R Sbjct: 60 SGEELCQELKDLGSFPVIMLTAKSSEEERITGFALGADDYVVKPASPRELVYRVKAVLKR 119 Query: 128 CKPQRELQQ--QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + LI+D R + RG+ +TP EF+LL+ L+ PG+ +SR++L Sbjct: 120 YDGAGAGEHPISFNNGTLILDSRRHTVTCRGESCSVTPTEFKLLQALAASPGRTYSRDEL 179 Query: 186 ----LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 L + +D Y +R++D+HIKNLR+K+E + FI+ VYG+GY + + Sbjct: 180 VSKALGYQFDGY----ERSVDAHIKNLRQKIELDSRKPEFIKTVYGIGYLFSGE 229 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 141/230 (61%), Gaps = 5/230 (2%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP-DLILLDLML 64 I N PRIL+V+D+P + LL YLR + ++ G ++ + P DL++LD+ML Sbjct: 10 ISPNAPRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIML 69 Query: 65 PGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 PG DGL++ R + + P++M++A+ E+IDR++GLEIGADDY+ KP++PRE++AR++ + Sbjct: 70 PGEDGLSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAV 129 Query: 125 LRRCKPQRELQQQDAE----SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 LRR + + + + + E ID QA LDLT E++LL+ P +V Sbjct: 130 LRRQRMEPDARGKQDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVI 189 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 +R+Q++++L R DR+ID I LRRK+E+ E ++ ++G GY Sbjct: 190 NRDQIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGY 239 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 97/232 (41%), Positives = 133/232 (57%), Gaps = 5/232 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RILIVED+ + +L +LR Y + G + L + Q D ++LDLMLPG DGL Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 72 LCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +CR R + PI++ +A+ E+ R+LGLE+GADDY+ KP+S E+VARVK +LRR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 131 QRELQQQDAES----PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + DA + L ID +AS G LDLTP EF LL + PGKVFSR LL Sbjct: 126 LARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 N ++ + T+++HI LR K+E+ AE I V+G GY+ A R Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQR 237 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 137/229 (59%), Gaps = 9/229 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+V+DEP + L+ L+ A Y +S G+ V ++ PDLI+LDLMLP DG+ Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 72 LCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +CRE+R+ S+ +PIVM+TA + D++ GL+ GADDY+ KP+SP+E+++R++ I RR + Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQ- 122 Query: 131 QRELQQQDAESPLIIDEGRFQASWR-----GKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 L Q + I +A R G+ ++LTP EF LL L GKV SR+QL Sbjct: 123 --TLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQL 180 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 L+ ++D + + R +D HI +LR K+E +I V VGY+ A Sbjct: 181 LHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHA 229 >UniRef50_Q3ATG7 Two component transcriptional regulator, winged helix family n=12 Tax=Chlorobiaceae RepID=Q3ATG7_CHLCH Length = 253 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 134/227 (59%), Gaps = 7/227 (3%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P +L+VED+ L L+ L A Y ++ + + + + L+LLD+MLPG DG Sbjct: 21 PLLLVVEDDQNLAALMEYNLNRAGYRCHIVGSAEAAMVELGRKSFALVLLDVMLPGMDGF 80 Query: 71 TLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 LCR IR + D+PI+MVTAK EEIDR+LG E+G DDY+ KP+S RE+ R++ IL+R Sbjct: 81 ELCRHIRNTHLYRDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSFRELNLRIRAILKR 140 Query: 128 CKPQR-ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + Q + Q+ L +D R + G+ L LT EF+LL L G+ SRE LL Sbjct: 141 ERRQSGKAQEVLGTGGLEVDLVRHCVTLDGQELVLTLMEFKLLVALLKRKGEAQSRETLL 200 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++D + ++ RTID+HI +R KL + A I+ V G+GYR E Sbjct: 201 SDVWDIDKSISTRTIDTHITRIREKLGNYGA---LIKTVRGLGYRLE 244 >UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobacteria RepID=Q2N765_ERYLH Length = 248 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 133/235 (56%), Gaps = 10/235 (4%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+DEP L + L +YL + + + PD+ L+D+M+PG DGL+L Sbjct: 13 ILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIMMPGEDGLSL 72 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 R + D+P++++TA+ E DR++GLEIGADDY+ KP+ PRE+VAR++++LRR Sbjct: 73 TRHLIETRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRAG--- 129 Query: 133 ELQQQDAESPLIIDEG-------RFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 DAE + EG R G ++ ++ AEFR+L+ P KV R++L Sbjct: 130 RAPAVDAEDAFYVFEGWQLDPLKRRLTDPDGALVAISTAEFRMLRAFLDHPKKVLDRDRL 189 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV 240 L+ + + DR +D+ + LRRK+E+ FI+ V G GYR+ AD R+ Sbjct: 190 LDLVQGREAHLFDRAVDNQVSRLRRKIEADSRNPHFIQTVRGGGYRFAADVARVA 244 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 156 bits (394), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 130/228 (57%), Gaps = 10/228 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIVED+ K+ ++ DYL A + + G L RQ DLILLD+MLPG DG Sbjct: 3 KILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGFA 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKT-------I 124 +CRE+RR+ ++P++MVTA+ EE+D L GL +GADDYI KP++P E+VARV++ I Sbjct: 63 VCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYERI 122 Query: 125 LRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 L KP++ + + A L I ++ K + T EF LL L+ P VFSRE Sbjct: 123 LASVKPEQHVVKSGA---LEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREA 179 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L ++ + T+ HI +R K+E A ++ + G GYR+ Sbjct: 180 LFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 156 bits (394), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 95/231 (41%), Positives = 137/231 (59%), Gaps = 17/231 (7%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIV+DE + +LL L Y G++ L V PDL++LDLMLPG DGL Sbjct: 5 KILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDGLE 64 Query: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + R IR R PI+M++AK EE D + GLE+GADDYI KP+SP+ ++AR++++LRR Sbjct: 65 VARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRRQ 124 Query: 129 K-------PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 + P R + A S + I + GK +DLTP+EF +L L+ PG VF+ Sbjct: 125 QAKAAPPDPGRTI----AVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFT 180 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 R Q+++ + ++ VTDR++D I LR+KLE +I V GVGYR+ Sbjct: 181 RWQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDY---GEYIETVRGVGYRF 228 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 89/229 (38%), Positives = 129/229 (56%), Gaps = 7/229 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ILIV+DE ++ L+ YL+ + G + L + D+ +LD+MLP DG Sbjct: 4 NILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDGFH 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR-CKP 130 +C++IR PI+M+TAKIE+ID+++GL IGADDYI KP++P EVVARVKT LRR + Sbjct: 64 ICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMRY 123 Query: 131 QRELQQQDA------ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 +QQ LII++ + S GK + LTP EF +L L GKV E+ Sbjct: 124 NNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSEE 183 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 L ++ + + + T+ +HI LR K+ FI+ V+GVGY E Sbjct: 184 LFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIE 232 >UniRef50_C3X860 Response regulator receiver protein n=2 Tax=Oxalobacter formigenes RepID=C3X860_OXAFO Length = 233 Score = 155 bits (393), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 135/221 (61%), Gaps = 7/221 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+VEDEP + +L+ +++A + P + G+ +++ PD++LLD MLP GL L Sbjct: 8 ILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQRFRPDVVLLDWMLPDLSGLRL 67 Query: 73 ---CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 RE R +P++M+TAK E D++ GL+ GADDYI KP+SP+E+VAR+ +LRR Sbjct: 68 LTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKV 127 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 P R A S + +D Q + G +++ +EF+LLK L P +VFSR QLL+ + Sbjct: 128 PDRAKSLLRAGS-VTLDPESCQVNIDGSDVEMGNSEFKLLKFLMANPDRVFSRSQLLDKV 186 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 + + + +RT+D H+ LR+ +L +++ +R V G+GY Sbjct: 187 WSNQLDIEERTVDVHVLRLRK---ALKGQENLVRTVRGMGY 224 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/240 (37%), Positives = 135/240 (56%), Gaps = 14/240 (5%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 ++ N ILI +DE + L DY+ Y ++G ++L V Q DL+LLD+M+P Sbjct: 1 MENNQYTILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DG+ RE+R IP++MVTAK +E DR+ GL GADDYI KP+SP+E++AR++ + Sbjct: 61 EMDGMEALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQI 120 Query: 126 RRC------KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 RR + + ELQ + + L + G+ + LT EF LL P +V Sbjct: 121 RRNYGYNDDESKEELQYKSIKVNL----NSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQV 176 Query: 180 FSREQLLNHLYD-DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 F+REQLL+H++ +Y RT+D+H+K +R K+ S + R VYGVGY E R Sbjct: 177 FNREQLLDHVWGVNYTTGGHRTVDTHMKTMRFKMGS---GGDYFRTVYGVGYVLEDGEGR 233 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 132/237 (55%), Gaps = 13/237 (5%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+V+DEP + LL L+ A Y + G L ILLDLMLP DG+ Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 72 LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + +++R+ PI++VTAK +E D++ GLE+GADDYI KP+SPREV+AR+K ++RR P Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 131 QRELQQQDAE----------SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 + L ID+ +++ + GK + LTP EF LL G+V Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 181 SREQLLNHLYD-DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 SR+ +LNH++ DY T R +D HI +LR K+E+ + IR V G GY + D Sbjct: 185 SRDAILNHVWGYDYASET-RIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGDG 240 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 132/226 (58%), Gaps = 12/226 (5%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +I+++EDEP + LL +L++ Y + G + L V+ PDL+LLDLMLPG G Sbjct: 4 KIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGTD 63 Query: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR- 127 +C+ ++ + IPI+M+TA+ +E+DR+LG E+GADDY+ KP+SPRE++ R+KT+LRR Sbjct: 64 VCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRRN 123 Query: 128 --CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 P+ Q+D L D + G LTP EF L GKV SREQL Sbjct: 124 VNILPKVAHWQRDG---LAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQL 180 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 L++ + RT+D+H++ LR+KL ++ V G+GYR Sbjct: 181 LSNAWGYEFEGYSRTVDTHVRRLRKKLGPY---ADWLETVRGIGYR 223 >UniRef50_D0IVE7 Two component transcriptional regulator, winged n=4 Tax=Comamonadaceae RepID=D0IVE7_COMTE Length = 249 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 138/242 (57%), Gaps = 9/242 (3%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 MT +TP +L+VEDEP + +L YL + G++ L RQ PDL+LL Sbjct: 10 MTTFTQPASTPMVLVVEDEPGIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLL 69 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 D+ LP DG+ + R IR SD+P++MVTA +++D+LL L +GADDY+ KP++P EVVAR Sbjct: 70 DIHLPKVDGVDVLRMIRNDSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVAR 129 Query: 121 VKTILRRCKPQ-RELQQQDAESPLIID-----EGRFQASWRGKMLDLTPAEFRLLKTLSH 174 V+ +LRR + + + P+ ID + + + L LT EFRLL L+ Sbjct: 130 VRAVLRRTQAKPAPVAAPIRVGPIEIDVEAHSAAVYDDAGQAVPLALTLTEFRLLACLAA 189 Query: 175 EPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR-WE 233 +P + FSR L+ + + + +R IDSH+ LRRKL+ L + I V G+GYR W Sbjct: 190 QPRRCFSRAYLIENCLPESDAL-ERVIDSHLSKLRRKLQ-LAGQDGLIETVRGIGYRLWP 247 Query: 234 AD 235 D Sbjct: 248 WD 249 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 135/222 (60%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+VED+ + L L Y + G + L + PDL+LLD+MLP DG Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+EIR+ S++PI+M+TAK EE+D++LGL++GADDYI KP+ +E++AR++ +LRR + Sbjct: 63 VCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQSD 122 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 Q+ P +D + +GK ++L+ EF +LK L PG+V++R+ ++ H++ Sbjct: 123 LSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIWG 182 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + R +D +I+ LR K+E + +I V +GY+++ Sbjct: 183 ENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQ 224 >UniRef50_A4SZ97 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=A4SZ97_POLSQ Length = 237 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 93/230 (40%), Positives = 131/230 (56%), Gaps = 10/230 (4%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 T RILIVEDEP + +L+ L A Y D ++ P++I+LD MLPG G Sbjct: 2 THRILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKSG 61 Query: 70 LTLCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 + +E+R R +PI+M+TAK EE D++LGL+ GADDY+ KP+SP+E+VARV+ +LR Sbjct: 62 VQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAMLR 121 Query: 127 RCKPQRELQQQDAESPLIIDEG--RFQASW---RGKMLDLTPAEFRLLKTLSHEPGKVFS 181 R P + PL +D R A+W K + L P EFRLL+ P +V S Sbjct: 122 RQMPIEDTGPLTV-GPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVHS 180 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 R LL+ ++ + +RT+D HIK LR L D ++ +I V G GYR Sbjct: 181 RASLLDKVWGSEVYIEERTVDVHIKRLRAALVPFDCDR-YIETVRGSGYR 229 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 142/245 (57%), Gaps = 14/245 (5%) Query: 6 IDENTP-RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML 64 +D N RILIVED+ +L L +YL + ++ +G + + ++ PDL++LDLML Sbjct: 20 VDTNEAWRILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLML 79 Query: 65 PGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 PG DGL++CR++R + PI+M+TA+ +++D++LGLE+GADDY+CKP PR ++AR++ + Sbjct: 80 PGEDGLSICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRAL 139 Query: 125 LRRCKPQRE------LQQQDAESP-------LIIDEGRFQASWRGKMLDLTPAEFRLLKT 171 LRR K Q E + +Q + P L+ID +A + +DLT AEF LL Sbjct: 140 LRRVKEQGEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWL 199 Query: 172 LSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 L+ G+V SRE++ L DR+ID + +R K+ I+ V GY Sbjct: 200 LASSAGRVLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYL 259 Query: 232 WEADA 236 + +A Sbjct: 260 FVKEA 264 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 127/221 (57%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ILI+EDE + ++ YL Y +G + R+ DL++LDLMLP DG Sbjct: 3 NILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGEE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+ +R+ SD+ I M+TAK D++ GL IGAD+Y+ KP SPRE+ ARV + RR + Sbjct: 63 VCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGCK 122 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 +E ++ LIID + G+ ++LTP EF +L L+ GKVF+RE ++ + Sbjct: 123 KENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIERAFG 182 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +DR+ID HIKNLR+K+E +I V +GY++ Sbjct: 183 MEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 136/234 (58%), Gaps = 15/234 (6%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 I++ +DE + + YL + + +G++ + ++ PDL++LDLM+P DGL + Sbjct: 5 IIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGLEV 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C IR+ D PI+M+TA+ EE DRLLGL +GADDY+ KP+SPRE+V RV ILRR + Sbjct: 65 CDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGWRS 124 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKM---------------LDLTPAEFRLLKTLSHEPG 177 E + ++ + +E QA + + ++LT EF LL L+ PG Sbjct: 125 EASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMYPG 184 Query: 178 KVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 KVFSR QLLN ++D T+ H++ LR K+E ++ ++I+ V+G+GY+ Sbjct: 185 KVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYK 238 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 137/225 (60%), Gaps = 6/225 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L+V+DE + +L+ +L Y +G +VLP + + PDL++LDLMLPG G+ Sbjct: 11 KVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGMD 70 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LC++I+ +PI+MVTAK E + +LGLE+GADDY+ KP+S RE++ARV+++LRR K Sbjct: 71 LCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKEG 130 Query: 132 RELQQQDAE---SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 E +Q + + ++ +A +DLT E+++L PG F+R++LL+ Sbjct: 131 EEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRDKLLDR 190 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ VTDR +D +IK LR KL E+ + + G+GYR+ Sbjct: 191 VWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRFN 232 >UniRef50_A3Y9W5 DNA-binding response regulator n=1 Tax=Marinomonas sp. MED121 RepID=A3Y9W5_9GAMM Length = 244 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 132/231 (57%) Query: 4 LPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLM 63 L E + IL+V+D+ + QLL ++L Y L S+G L + + PDLILLD+M Sbjct: 12 LTGSEMSETILVVDDKSNVQQLLSEFLTGHGYQVRLASNGKAALLALEERVPDLILLDIM 71 Query: 64 LPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKT 123 +P DG +R+ D+P++MVTAK E D + G E+GADDY+ KP+ E++ R+K Sbjct: 72 MPEMDGYGFIHTMRQTHDLPVIMVTAKQHEGDLIKGFELGADDYLIKPFKLSELLVRIKA 131 Query: 124 ILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 +LRRC L + + L +D+ R A ++G+++ LT +EF LL L + ++ Sbjct: 132 VLRRCIKHETLTTHLSFAELELDKHRHDAIYKGQLIPLTSSEFCLLSLLLQYAEQTVNKA 191 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 +L +L ++ + T+ HI+NLR KL+ + I +V+GVGYR A Sbjct: 192 ELCRYLIENGNTGLESTLKIHIRNLRIKLKQNTNKAFEIDSVFGVGYRLSA 242 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/236 (38%), Positives = 136/236 (57%), Gaps = 18/236 (7%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 N +IL VEDE + L L + + + G Q L Y+ + D I+LD+ LP + Sbjct: 3 NQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQN 62 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G +C+++R+ P++ +TA+ +EIDR++GLEIGADDY KP+S RE+VAR+K I RR Sbjct: 63 GFEVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRM 122 Query: 129 KPQRELQQQDAES---------PL-----IIDEGRFQASWRGKMLDLTPAEFRLLKTLSH 174 E+Q Q+ S PL + Q + G++L LT E+RLL L Sbjct: 123 ----EIQAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQ 178 Query: 175 EPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 P KVFSR+QL++H+++ +RT+D+HIK+LR+KL+ + + IR G GY Sbjct: 179 HPEKVFSRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGY 234 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 136/226 (60%), Gaps = 1/226 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 T ++LI++DE L + L + ++ G++ L D I+LDLMLP DG Sbjct: 16 TMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDG 75 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +TLC IR+ SD+ I+M+TAK +ID++LGLE+GADDY+ KP++ RE++AR++T++RR + Sbjct: 76 ITLCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQE 135 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + + L++D G + ++++LTP EF +L L G+VF RE++ + Sbjct: 136 KGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLV 195 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + + T RTID H+KNLR KL+ + + I +GVGY + D Sbjct: 196 WGEPCYDT-RTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_C1SP47 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SP47_9BACT Length = 234 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/229 (35%), Positives = 137/229 (59%), Gaps = 3/229 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + ILIV+D+ KL ++L YLR SY+ +I++ + Y++ + P +I+LD+M+P +G Sbjct: 2 SHNILIVDDDIKLCKMLSRYLRDYSYSVDVINNPLMLEKYLKSSKPSVIILDIMMPHING 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 LC+++R+ SDIP++M++A+ E DR+ GLE GADDY+ KP+ PRE++AR+ +++R + Sbjct: 62 FDLCKKLRKNSDIPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKRFE 121 Query: 130 PQRELQQQDA---ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + A L ID +++A+ G L+LT EF +L + P + SR++L Sbjct: 122 HSEDTANNAAVYQYGELSIDTDKYKATMDGSNLELTKTEFIILSLMVRNPYILLSRDRLY 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 N L +RT+D + LR KL +I+ V+G GY + AD Sbjct: 182 NELTGFDCDAYNRTVDISVSRLRTKLNDDPKSPKYIKTVWGEGYMFIAD 230 >UniRef50_B1HT37 Transcriptional regulatory protein srrA (Staphylococcal respiratory response protein A) n=2 Tax=Bacillaceae RepID=B1HT37_LYSSC Length = 216 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/215 (38%), Positives = 131/215 (60%), Gaps = 5/215 (2%) Query: 25 LLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPI 84 LL YL + + S D ++ Y+ + DL+LLD+M+P DG +C+EIR+F +PI Sbjct: 4 LLTLYLEPVFHCRAMSSIHDALI-YLEEEHVDLVLLDIMMPEMDGFQVCQEIRKFWHVPI 62 Query: 85 VMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLI 144 +M+TAK E D + GL IGADDYI KP+ E++AR+ +LRR K + ++ + L Sbjct: 63 IMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVLRRTKVENKVVVFEG---LR 119 Query: 145 IDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSH 204 +D+ F+ ++ + + LTP EF ++ KVFSRE L+N ++ + + DRTIDSH Sbjct: 120 LDKESFELYFQQEAIPLTPKEFSMMSLFLDYQNKVFSREHLINTVWGYHVSIEDRTIDSH 179 Query: 205 IKNLRRKL-ESLDAEQSFIRAVYGVGYRWEADACR 238 ++NLR KL +S +++ V+G+GY+W A R Sbjct: 180 VRNLREKLRKSGFPADDYLQTVWGIGYKWHKFADR 214 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/238 (39%), Positives = 139/238 (58%), Gaps = 21/238 (8%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+VED+ + +L+ L Y + G++ L + + PDL+LLD+MLP DGL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 +C++IR ++IP++M++A+ E DR++GLE+GADDYI KP+SPRE++AR+K L Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARL--- 119 Query: 129 KPQRELQQQDAESPLIIDEG-------RFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 RE ++ PL + G + + +G+ + LT EF LL P +VFS Sbjct: 120 ---REERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFS 176 Query: 182 REQLLNHLYDDYRVVTD-RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 RE LL ++ Y V D RT+D HI NLR KL+S+ I +V GVGYR + R Sbjct: 177 REYLLQKVW-GYTVSGDTRTVDVHISNLRSKLKSV---SPIIESVRGVGYRLAVNYSR 230 >UniRef50_P50351 Transcriptional regulatory protein chvI n=188 Tax=cellular organisms RepID=CHVI_RHISN Length = 241 Score = 154 bits (389), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/242 (37%), Positives = 135/242 (55%), Gaps = 22/242 (9%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 I +V+D+ + + L A Y + G L + PP L + D+ +P DG+ L Sbjct: 4 IALVDDDRNILTSVSIALEAEGYKVETYTDGASALEGLLARPPHLAIFDIKMPRMDGMEL 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC---- 128 R +R+ SD+P++ +T+K EEID L GL++GADD+I KP+S R +V RVK ILRR Sbjct: 64 LRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRRAPARD 123 Query: 129 --------------KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSH 174 P R L++ L++D+ R +W+ + + LT EF +L +L+ Sbjct: 124 AAAAGVAGAAKSADAPSRSLER----GQLVMDQERHTCTWKSEPVTLTVTEFLILHSLAQ 179 Query: 175 EPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 PG V SR+ L++ YD+ V DRTIDSHIK LR+K + +D + I +YGVGYR+ Sbjct: 180 RPGVVKSRDALMDAAYDEQVYVDDRTIDSHIKRLRKKFKMVDVDFDMIETLYGVGYRFRE 239 Query: 235 DA 236 A Sbjct: 240 SA 241 >UniRef50_C7QAE5 Two component transcriptional regulator, winged helix family n=12 Tax=Actinomycetales RepID=C7QAE5_CATAD Length = 268 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 133/220 (60%), Gaps = 6/220 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+ E +P + L+ LR + ++ GD+ L + DL+LLDL LP DGL Sbjct: 49 RILVAEPDPDSAEQLLRKLRRQGHRAEVVHTGDKAL--IEFPSADLVLLDLELPDVDGLE 106 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR IR SD+ I+ V+ + EEID +LGL+ G+DDY+ KPY RE++AR+ ++RR +P Sbjct: 107 ICRGIRAVSDVAIITVSERAEEIDCVLGLQAGSDDYLVKPYGFRELMARIDAVMRRIRPG 166 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + A L+ID G + G+++ +T EF LL L+ +PG V SR+Q+++ ++ Sbjct: 167 AVRDRVIAHGRLLIDAGCREVRIGGQVVGVTRKEFDLLLLLASQPGTVISRQQIMSQIWQ 226 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 D + RTID+H+ +LR KL S S+I V GVG++ Sbjct: 227 DVWSESTRTIDTHVSSLRSKLGS----GSWIVTVRGVGFQ 262 >UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae RepID=Q2S514_SALRD Length = 237 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 132/224 (58%), Gaps = 11/224 (4%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +L+V+DE + +++ +L Y G++ L DLI+LD+MLPG DG + Sbjct: 12 VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALE-TASGKIDLIVLDIMLPGVDGYEV 70 Query: 73 CREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 CRE+R +IPIV ++AK EE D++ GL +G DDY+ KP SP+ +VA VK +LRR Sbjct: 71 CRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRRSG 130 Query: 130 -PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + + + D L I E ++A G+ L LT EF LL+ L P K F+R+QLL Sbjct: 131 VEESSILEVDG---LKIYEDEYRAELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQLLET 187 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ D +VT+RT+D+HIKNLR KL I+ V GVGYR+ Sbjct: 188 IWKDAMMVTERTVDAHIKNLREKLGDF---AKHIQTVRGVGYRF 228 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 130/225 (57%), Gaps = 3/225 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LIVEDE L L LR + T++ G L ++ D++LLDLMLPG G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C+++R S +P++MVTA+ EID+++GLE+GADDY+ KPYS RE++AR++ +LRR Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 123 Query: 133 ELQQQDA---ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + D P+ +D R S G+ + L EF LL+ L G+V +R QL++ + Sbjct: 124 DAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 183 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + V +T+D H+K LR K+E A + V G+GY+ E Sbjct: 184 WGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 136/228 (59%), Gaps = 5/228 (2%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 +T IL+++D+ L +LL +YL Y G+ + ++ DL+LLD+M+PG D Sbjct: 2 STHSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGID 61 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G + IR S +P++M+TAK EE DR+LGLE+GADDY+ KPYS RE++AR+K +LRR Sbjct: 62 GFETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRI 121 Query: 129 KPQRELQQQD----AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + + ++ D A + + ++ ++ G+ + +T +EF++L+ L GK +E Sbjct: 122 ELDKNQKEDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPKED 181 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L + + DR+ID H+ N+RRKL EQS I+ + G+GY + Sbjct: 182 LYLEVLGREIMAYDRSIDMHVSNVRRKLGGT-TEQSKIQTIRGIGYMF 228 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 127/228 (55%), Gaps = 6/228 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 IL+V+DE + L+ YL+ + +G V +L +LD+MLP DG T Sbjct: 4 NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGFT 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LC+ IR + P++M+TAK EEID++ GL +GADDYI KP+ P E+VARVK LRR Sbjct: 64 LCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTKY 123 Query: 132 RELQQQDAE-----SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 ++ E S LI+D + + K + LTP EF +L L G+V S E+L Sbjct: 124 NSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEELF 183 Query: 187 NHLY-DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ D Y ++ T+ HI++LR K+ +I+ V+GVGY+ E Sbjct: 184 HEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 146/245 (59%), Gaps = 20/245 (8%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP--DLILLDLMLPGTDG 69 +IL+VED + +++ + + ++ G++ + P D+I LDL LPG DG Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 70 LTLCREIRRFSDI-PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + + ++IR S + PI+M+TA+ E D++LGLE+GADDY+ KP+SP ++AR+K + RR Sbjct: 62 MQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 121 Query: 129 K-PQRELQQQDAE------SPLIIDEGRFQASWRGK--------MLDLTPAEFRLLKTLS 173 + ++ +DA+ S + F+ S + + +LDLTP EF LLKTL+ Sbjct: 122 ELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLA 181 Query: 174 HEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 P +VFSREQLL ++D +RT+D+HIK LR+K+E + + I+ V+GVGY+++ Sbjct: 182 KNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEVGPQ--VIQTVWGVGYKFD 239 Query: 234 ADACR 238 A Sbjct: 240 DSAVN 244 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 91/231 (39%), Positives = 134/231 (58%), Gaps = 7/231 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIVEDE + ++ YL Y +G + PDLI+LDLM+P DG Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LC EIR+ S++PI+M+TAK EE DR+LGL +GADDY+ KP+SPRE+V RV+ ILRR Q Sbjct: 63 LCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN-Q 121 Query: 132 RELQQQDAESPLI-IDEGRFQASWRGKM-----LDLTPAEFRLLKTLSHEPGKVFSREQL 185 +Q +++ S +I + + R + ++LT EF +L ++ P +VFSR QL Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 L ++D T+ + LR KLE + +I V+G+GYR+E + Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNG 232 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 134/230 (58%), Gaps = 8/230 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 T ++L+V+DE + +++ L+ +Y +G+ L ++ PDL++LD+MLP DG Sbjct: 4 TYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDG 63 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +CR IR S +PI+M++AK E ID+ +G +GADDY+ KP+SP E+ RVK +LRR Sbjct: 64 YEVCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRS- 122 Query: 130 PQRELQQQDAESPLIIDEGRFQASW-------RGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 +E I +G + + RGK + LTP EF LL ++ P +VF+R Sbjct: 123 FDKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTR 182 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 EQL H++ D V TI I+ LR K+E A+ +I+ V+G+GY++ Sbjct: 183 EQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 136/232 (58%), Gaps = 16/232 (6%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIV+DE + +++ L A Y + Q + PDLILLD MLPGT G+ L Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65 Query: 73 CREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 R ++R DIPI+M+TAK EE +++ GLE+GADDYI KP+SPRE+VAR+K +LRR Sbjct: 66 ARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTG 125 Query: 130 PQRELQQQDAESP-----LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 P D+E+P L++D + + GK ++ P E+RLL+ + ++R Q Sbjct: 126 P------GDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQ 179 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 LL+ ++ V +RT+D HI+ LR+ L + ++ ++ V G GYR+ + Sbjct: 180 LLDQVWGGNVYVEERTVDVHIRRLRKALG--EVYENLVQTVRGTGYRFSTKS 229 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 140/225 (62%), Gaps = 8/225 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLP-YVRQTPPDLILLDLMLPGTDGL 70 ++L+V+DE ++ +L+ D+L ++Y +G+Q + + Q LI+LD+M+P DG Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C+EIR++S +PI+M+TAK +E D LLG E+G D+YI KP+SP+ +VARV+ I+RR Sbjct: 65 QVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRS-- 122 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + L + ++ID+ + ++L+ EF LL G SRE++LN+++ Sbjct: 123 IQTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNNVW 182 Query: 191 DDYRVVTD-RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 +Y D RTID+H+K LR K+ + +I+ ++G+GY++E Sbjct: 183 -NYDYFGDARTIDTHVKKLRSKMGD---KGDYIKTIWGMGYKFEV 223 >UniRef50_Q9KAM3 Two-component response regulator n=1 Tax=Bacillus halodurans RepID=Q9KAM3_BACHD Length = 231 Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 132/222 (59%), Gaps = 3/222 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+L+V+DE K+ L+ + A Y + G + ++ P DL+LLD+MLP DG + Sbjct: 4 RVLVVDDEKKMQVLITVCVSEAGYLVQTAASGLAAMDRLKAEPFDLVLLDIMLPDVDGFS 63 Query: 72 LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 L ++R D+ I+M+TA E + GL GADDYI KP+ P E+ AR+ ++LRR Sbjct: 64 LIAQLRHLQEDVAIIMLTALGETEHIVRGLNEGADDYIVKPFEPDELNARILSVLRRKGG 123 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 ++ E L ++E S+ G+ L LT E+R+L L PG+ ++REQLL+ + Sbjct: 124 LA--SRKGEEKQLKVNEKAHDISFAGQSLGLTKTEYRVLHRLLSNPGRTYTREQLLDLAW 181 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 D + DR +D+HIKN+R KLE + A+ + I+ V+GVGY++ Sbjct: 182 DRQVEIYDRNVDAHIKNIRDKLEKVGADSTVIQTVWGVGYKY 223 >UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV27_9GAMM Length = 238 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 134/231 (58%), Gaps = 6/231 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +++ IL+V+D+ +L L+ +LR + + G + + DLI+LDL LP Sbjct: 4 KSSAHILVVDDDLRLRSLVEAHLRQVGFTVDGVRDGQGLDHKLHGGEVDLIILDLGLPDE 63 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGL +C+ +R D PI+++TA+ +E+DR+LGLE+GADDY+ KP+ PRE++ARV+ ILRR Sbjct: 64 DGLQICQRLRLTYDTPILILTARGDEVDRILGLEMGADDYLSKPFHPRELIARVQAILRR 123 Query: 128 CKPQRELQQQDAE------SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 KP +Q E ++D R + WRG+ L+L+ A+F+ L TL G+ S Sbjct: 124 TKPMNRGRQHADEPEICMKGAFVVDTRRQKILWRGEPLELSQADFQTLSTLIKHEGQPLS 183 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 RE+L+ DR+ID I LR+ L+S IR V+G GY + Sbjct: 184 RERLMLLSRGRTYASDDRSIDMQISRLRKLLDSKTDGAQHIRTVWGSGYMF 234 >UniRef50_A9GK22 Response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GK22_SORC5 Length = 265 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 4/225 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL++ED+ L +L + A +A G + L + PDL++ D+ +P DG + Sbjct: 36 RILLIEDDTALADVLSLAVEDAGHAVLRACDGVEGLRRIEGAGPDLVISDVNMPRLDGFS 95 Query: 72 LCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 LCR +R + +PI+++T++ EID+ LGLE+GADDY+ KP+S R ++ARV +LRR + Sbjct: 96 LCRRLREAKNLVPIILLTSRDAEIDQALGLELGADDYVVKPFSTRVLLARVHALLRRQEI 155 Query: 131 QRELQQQD---AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + A L +D R + +RG + +T EFRLL+ L PG VFSR QLL Sbjct: 156 RAGASRAGCVVALGALQLDPERLEVRYRGAPVTVTLTEFRLLEALVARPGVVFSRNQLLE 215 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +D V R +D++++ LRRK+E++D I V G GYRW Sbjct: 216 LARNDDSTVDARLVDTYVRRLRRKMEAVDPAFERIETVIGAGYRW 260 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 153 bits (386), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 135/222 (60%), Gaps = 4/222 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L+ +D+ +L L+ +Y Y +G + L + PD+++LD+M+P DG Sbjct: 3 KLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 ++IR S +P++M+TAK ++IDR+LGLE+GADDY+ KP++PRE++AR+K ILRR + Sbjct: 63 TLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQE 122 Query: 132 RE---LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 RE D L+ + R G++++LT +E+ LL+ + PG+V ++++L Sbjct: 123 REDDPTADIDLSGVLLRRKDR-TVYLEGELVELTTSEYTLLECMLMAPGQVLTKQELSEK 181 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 + DR++D HI NLR+K+ +L+ I+ V GVGY Sbjct: 182 ALGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGY 223 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 153 bits (386), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 134/225 (59%), Gaps = 6/225 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+DEP + L+ L A+Y + +G + V++ D +++DLMLP DG+ Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64 Query: 73 CREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 ++IR+F + IPI+M+TAK ++D++LGLE+GADDYI KP+SP+E+++R+K ILRR Sbjct: 65 TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRA 124 Query: 132 RELQQQD----AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 L + D AE+ + ID R + + LTP EF+LL+ L +V SR+Q+L Sbjct: 125 INLAEIDPTLQAEN-IAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILE 183 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ R +D HI +LR KLE+ I+ + G GY + Sbjct: 184 KVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEF 228 >UniRef50_C4WQ62 Probable transcriptional regulator ycf27 n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WQ62_9RHIZ Length = 257 Score = 153 bits (386), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 93/236 (39%), Positives = 140/236 (59%), Gaps = 13/236 (5%) Query: 3 ELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDL 62 E P+D + +LIVEDEP++ Q+L YL Y + G+ L + PD++LLD+ Sbjct: 25 EPPVDNSL--VLIVEDEPEIAQILDAYLVREGYRTVRAADGETALQHHALLSPDIVLLDV 82 Query: 63 MLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVK 122 +P DG + +R+ + P++MVTA E+IDRL GL +GADDY+ KP++P+EVVARVK Sbjct: 83 RIPKLDGFAVLARLRQTKNTPVIMVTALAEDIDRLSGLRLGADDYVVKPFNPQEVVARVK 142 Query: 123 TILRRCK--PQRELQQQDAESPLIIDEGRFQA--SWRGK--MLDLTPAEFRLLKTLSHEP 176 +LRR K Q L++ A + +D + A + G+ L LT +EFR+L + P Sbjct: 143 AVLRRTKGDQQETLRRFGA---IEVDFNAYSAFVNCNGERIALQLTLSEFRILAYMVRRP 199 Query: 177 GKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 F R +L+ + + RT+D+HI NLR+KLE+L ++ F AV G+GYR Sbjct: 200 THAFDRADILDACLPESDALV-RTVDTHISNLRKKLEAL-GQKDFFPAVRGIGYRL 253 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 153 bits (386), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 133/224 (59%), Gaps = 1/224 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RILI+EDE + L D L Y + G++ L V PDL+LLD+M+P DG Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 72 LCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 LC E+RR ++ +PI+M+TAK + DR+ GL+ GADDY+ KP+S E++ARV+ +LRR + Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 ++ + ID + A K L T E+ +L+ LS PG+ SRE+ L+ ++ Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 T RT+D+HI +LR K+ES + +I+ V+GVGYR E Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVH5_9GAMM Length = 247 Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 137/234 (58%), Gaps = 5/234 (2%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M++L + + RIL+VEDE + +LL L+ + T ++ +Q ++R P LI+L Sbjct: 1 MSDLELGKTVYRILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVL 60 Query: 61 DLMLPGTDGLTLCREIRRF---SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREV 117 D MLPG G+ CR +RR +PI+++TA+ EE DR+ GLE GADDY+ KP+SPRE+ Sbjct: 61 DWMLPGESGVAWCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPREL 120 Query: 118 VARVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 ARV+ +LRR L++D + + +++ + P EFR+L+ + P Sbjct: 121 GARVQALLRRSYGGLTPTHVRI-GELLVDIKAHRVTLDDELVGMGPTEFRMLRLFATNPD 179 Query: 178 KVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 +V+SRE LL+H++ + +RT+D HI+ LRR L + + I V G GYR Sbjct: 180 RVYSREALLDHIWGRQSFIEERTVDVHIRRLRRALAKV-GYANIIETVRGEGYR 232 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 152 bits (385), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 7/228 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIV+DE ++ L+ YL+ + ++ ++ + DL LLD+M+P GL Sbjct: 72 KILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISGLE 131 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LC++IR + PI+M+TAK EID++ GL +GADDYI KP+ P EVVARVK LRR K + Sbjct: 132 LCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYK-R 190 Query: 132 RELQQQDAE-----SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + AE LI+++ + ++L LTP EF +L L + G V S E+L Sbjct: 191 YNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAEELF 250 Query: 187 NHLY-DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ D+Y ++ TI HI++LR K+E +I+ V+G GY+ E Sbjct: 251 HQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIE 298 >UniRef50_D0LHP7 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHP7_HALO1 Length = 227 Score = 152 bits (385), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 130/228 (57%), Gaps = 9/228 (3%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 N RIL+ +DE + ++ L Y + G L + DL++LD+++P D Sbjct: 2 NPARILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPELD 61 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 GL LCR++R D+PI+ ++++ EE DR+LGLE+G DDY+ KP+SPRE+ RVK +LRR Sbjct: 62 GLNLCRKLRERGDVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRRV 121 Query: 129 KPQRELQQQDAESPLI-----IDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 +R DA L+ +D + + LT EFR+L + PG+V +R Sbjct: 122 AARR--GADDAPPALVYERLTLDPAAHELRVDDDKIALTVTEFRVLHAILERPGRVLTRS 179 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 QL++ Y+D V++RTID+HI+ +R KL E I V+G+GY+ Sbjct: 180 QLIDRAYEDGLHVSERTIDTHIRRIRAKLRPYGIEA--IETVHGLGYK 225 >UniRef50_A9D5A2 Osmolarity response regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D5A2_9RHIZ Length = 235 Score = 152 bits (385), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 131/235 (55%), Gaps = 3/235 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 ++ + R+++V+D+P+L LL +L + + G + + ++P D I+LDLM+ Sbjct: 1 MNVKSDRVIVVDDDPELRTLLRRFLSEHGFETRAVDGGTALDRELSRSPADAIVLDLMMS 60 Query: 66 GTDGLTLCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 G DGL +CR +R D PI+M+TA+ + IDR++GLE GADDY+ KP+ PRE+VAR+ + Sbjct: 61 GEDGLAICRRLRAAGDQTPIIMLTARGDPIDRIVGLETGADDYLAKPFEPRELVARLSAV 120 Query: 125 LRRCKPQRELQQQDAES--PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 LRR + R++ D + PL I+ + G L L+ EF LL + G+ SR Sbjct: 121 LRRTRGMRDVPTDDTVTIGPLEINFSTRMVTRDGASLKLSSREFALLAAMVRSRGRPLSR 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 QL+ VTDR +D I LRR L + I+ V+GVGY +D Sbjct: 181 AQLIERALGRDAEVTDRAVDVQIARLRRALGDRADDAGLIKTVWGVGYVLVSDGA 235 >UniRef50_B8JG70 Two component transcriptional regulator, winged helix family n=2 Tax=Cystobacterineae RepID=B8JG70_ANAD2 Length = 238 Score = 152 bits (385), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 133/229 (58%), Gaps = 7/229 (3%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 +D R+L VED+ +L L YL + +A T ++ G L + D+++LDLMLP Sbjct: 4 LDPERFRVLFVEDDERLAALTTRYLESHGHAVTWVADGQLGLAEALKGQHDVVILDLMLP 63 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 GL +CRE+R +PI+M+TA EE DR+LGLE GADDY+ KP+S RE++AR++ ++ Sbjct: 64 RKSGLEVCRELRARLPVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALV 123 Query: 126 RRCK----PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 RR + P RE+ + L + + AS G+ L LT AEF LL+ L+ G+V + Sbjct: 124 RRGRGSLGPPREVIRV---GDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLT 180 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 REQLL+ DR+ID+HI LR KL + ++ V G GY Sbjct: 181 REQLLDLTKGSADEAFDRSIDAHISRLRHKLGDDPRRPALLKTVRGAGY 229 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 89/237 (37%), Positives = 133/237 (56%), Gaps = 24/237 (10%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL++ED + + + + + G + + DLI+LD+MLP DG+T Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR+IR S +PI+M+TAK E D+++G E+GADDY+ KP+SP +VAR+K ++RR K Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK-- 119 Query: 132 RELQQQDAESPLIIDEGRFQASW-------RGKML------DLTPAEFRLLKTLSHEPGK 178 A +IDE + R +L +LTP EF LL L P + Sbjct: 120 -------ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQ 172 Query: 179 VFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 VFSREQLL ++ +RT+D HIK LR+KL S D + F+ V+GVGY+++ D Sbjct: 173 VFSREQLLEQVWGYQFYGDERTVDVHIKRLRKKLASED--KPFLYTVWGVGYKFDED 227 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 130/229 (56%), Gaps = 5/229 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N +IL+V+DE + ++ YL + G L LI+LDLMLP Sbjct: 2 NNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKM 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 G +C IR S +PI+M+TAK EE +++ G+ +GADDY+ KP+S RE+V RV+ +LRR Sbjct: 62 TGEEVCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRR 121 Query: 128 C----KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 P ++ + L +D + +G +++LT EF++L P +VFSRE Sbjct: 122 AYRDFSPMADILTFN-NGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSRE 180 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +L+ + DRT+DS+IKN+R+K+ES E ++I VYG+GY++ Sbjct: 181 KLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKF 229 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 135/228 (59%), Gaps = 10/228 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQT---PPDLILLDLMLPGTD 68 RIL+V+DEP + +L YL A + + + G L +R P DL+LLD+M+PG D Sbjct: 3 RILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPGMD 62 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 GL + R +R +D +++VTA+ EE+D+L+GL +GADDY+ KP+SPREV ARVK++LRR Sbjct: 63 GLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLRR- 121 Query: 129 KPQRELQQQDAE----SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 +R+ D L +D + + G + LT EF LL L PG+VFSR Q Sbjct: 122 --RRDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQ 179 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 LL ++ + +R +D HI+NLR +L + I V GVGY++ Sbjct: 180 LLEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKF 227 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 139/243 (57%), Gaps = 15/243 (6%) Query: 9 NTP-RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 NTP IL+V+D+P++ LL YL + + G ++ + DL++LD+MLPG Sbjct: 2 NTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGD 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGLTLCR++R S++P++M+TA ++ DR++GLE+GADDY+ KP++PRE+VAR++T+LRR Sbjct: 62 DGLTLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRR 121 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWR------------GKMLDLTPAEFRLLKTLSHE 175 + E AE + RF A W G +++L+ AE+RLL+ Sbjct: 122 ARALPE-NIAKAEPEAMSRTIRF-AGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKY 179 Query: 176 PGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 P +V SR+QLL+ DR+ID + LR +L E I+ V G GY D Sbjct: 180 PNRVMSRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATD 239 Query: 236 ACR 238 R Sbjct: 240 VER 242 >UniRef50_B1JFX2 Two component transcriptional regulator, winged helix family n=30 Tax=Bacteria RepID=B1JFX2_YERPY Length = 235 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 128/229 (55%), Gaps = 4/229 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILI ED + L++ L Y P +G Q L RQ PD I+LD+M+P DG Sbjct: 2 KILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGYK 61 Query: 72 LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +CREIR+ PI+ ++AK EEIDR++GLE+GADDYI KP+ E+ AR+KTI+RRC Sbjct: 62 VCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCLR 121 Query: 131 QRELQQQDAESP---LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + +DA P L++ A L+L+ E +L+ L G+V +R+ L + Sbjct: 122 KVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVITRDMLFD 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 ++ + RT+D HI LR+ +E IR V+G GYR++ A Sbjct: 182 AVWGYDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYRYQGTA 230 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 138/226 (61%), Gaps = 4/226 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP-DLILLDLMLPGTDGL 70 +ILIV+D+ ++ QLL Y R Y P +G + + P L++LDLM+P +G+ Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNGM 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + R++R+ S IPI++++AK ++D++ GL GADDY+ KP++P EV+ARVK++LRR + Sbjct: 62 DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSEN 121 Query: 131 QRELQQQDAES--PLIIDEGRFQA-SWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 Q + D + PL+I++ + + +G + LT EF +L L+ P +VFS + + Sbjct: 122 QVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ VV+ +T+ H+ +LR K+E+ + I V+GVGY+ E Sbjct: 182 RVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 227 >UniRef50_C4KB06 Two component transcriptional regulator, winged helix family n=18 Tax=Bacteria RepID=C4KB06_THASP Length = 242 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 130/227 (57%), Gaps = 7/227 (3%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P I++VED+P LL+ Y Y + + D +L V Q L+LLD+ LPG DGL Sbjct: 9 PHIMVVEDDPVSRALLVGYFEKEGYRVSASDNADDLLQRVEQERIALVLLDIRLPGKDGL 68 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 TL RE+R S + I++VTA+ +EIDR++GLE+GADDY+ KP++PRE++ R + +L R Sbjct: 69 TLTRELRAASRVGIILVTARDDEIDRIVGLELGADDYVTKPFNPRELLVRARNLLWRVAQ 128 Query: 131 QRELQQQDAESPLIIDEG-------RFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + ++AE EG R S G++ L EF+LL L G+V SR+ Sbjct: 129 CAGSETREAEQGCFRFEGWTLNPHKRQLVSPDGRIERLPQGEFKLLMALLSHAGQVLSRD 188 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 QL++ ++D DRT+D + +RRKL+ A+ I +G GY Sbjct: 189 QLMDAIHDREWTPNDRTVDVLVGRVRRKLDDNPADPRLILTAHGAGY 235 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 7/228 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +L+VEDE L LL L Y+ + G+ L +T PDL+++D MLP G+ + Sbjct: 5 VLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIEV 64 Query: 73 CREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 CR +R +++PI+M+TA+ EE DR+ GL+ GADDY+ KP+S E+ AR++ +LRR + Sbjct: 65 CRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRIR 124 Query: 130 PQRELQQQDAESP-LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 P L + E+ + +D + + + L P EFRLL L PG+VFSREQLL+ Sbjct: 125 PG--LAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDA 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 ++ V RT+D H+ LR+ L + + E+ IR V GY ++ +A Sbjct: 183 VWGSDVYVEARTVDVHVGRLRKALNNKE-ERDPIRTVRSAGYAFDVNA 229 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/230 (40%), Positives = 134/230 (58%), Gaps = 11/230 (4%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P+I +VEDE L LL L A + I GD+ +++ PDL++LD MLPG G+ Sbjct: 3 PKIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGI 62 Query: 71 TLCREIRRFSD---IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 LCR +R+ + +PI+M+TA+ EE +R+ GL GADDY+ KP+S E++ARVK +LRR Sbjct: 63 ELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122 Query: 128 CKPQ---RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 KP+ L+ D E +D + R + + L P EFRLL+ L PG+VFSR Q Sbjct: 123 AKPEVLSTLLRCGDIE----LDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQ 178 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 LL+ ++ V +RT+D H+ LR+ L + IR V G GY E+ Sbjct: 179 LLDGVWGHDIYVDERTVDVHVGRLRKAL-NFSNMPDVIRTVRGAGYSLES 227 >UniRef50_C8WHK8 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WHK8_EGGLE Length = 232 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 136/230 (59%), Gaps = 7/230 (3%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E+ RI + +DE + L+ L A + PT+ +L P DL++LD+M+PG Sbjct: 2 ESKMRIAVCDDEQAIADLVGQLLVEAGFVPTVFYAAPDLLACQADDPFDLVILDIMMPGM 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG CRE+RR S +PI+ +TAK EE+D+++G E+GADDY+ KP+ PRE+VARV+ LRR Sbjct: 62 DGFACCRELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRR 121 Query: 128 CKPQRELQQQDAESPL-----IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 ++ ++D L +DE + A+ G+ L LTP EF +L L + + + Sbjct: 122 -ATSNDVAREDGPGMLECCGIALDESAYTATLHGEALSLTPKEFAILACLMRDQSRPVAS 180 Query: 183 EQLLNHLYDD-YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 L ++ + ++ T+ HI++LR+KL ++D+ Q F+ V+GVGY+ Sbjct: 181 RDLFETVWGEIANAQSNNTVMVHIRHLRKKLAAVDSSQEFVETVWGVGYK 230 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 137/235 (58%), Gaps = 5/235 (2%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 +TP IL+VED+ ++ QL+ YLR ++ ++ + + DLI+LDLMLPG D Sbjct: 16 STPHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGED 75 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 GL++CR +R S +PI+M+TAK EEIDR++GLE+GADDY+ KP++PRE++AR++ +LRR Sbjct: 76 GLSICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRRG 135 Query: 129 KPQRELQQQDAE----SPLIIDEGRFQ-ASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + + ++D G Q + G + LT AEF LL + PG+V SR+ Sbjct: 136 SGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLSRD 195 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 QLL+ +R+ID + +R+K+E I+ + GY + + R Sbjct: 196 QLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPEVSR 250 >UniRef50_A6G8V6 DNA-binding response regulator n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8V6_9DELT Length = 289 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/252 (36%), Positives = 141/252 (55%), Gaps = 33/252 (13%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP-----DLILLDLMLP 65 PR+L+V+D+PKL +++ L YA T +G + L + T DL+++D+ +P Sbjct: 34 PRLLLVDDDPKLREVVGYALEREGYAVTQARNGAEALDLLEATGSSSADFDLLVVDVSMP 93 Query: 66 GTDGLTLCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 DG L R +R R +D P++ ++A+ +EIDR+LGLE+G DDY+ KP+S RE+ RVK + Sbjct: 94 EIDGFDLVRRLRLRDADTPVLFLSARSDEIDRILGLELGGDDYVTKPFSTRELATRVKVL 153 Query: 125 LRRCKPQREL--------------QQQDAES-----------PLIIDEGRFQASWRGKML 159 LRR QR L DAE+ PL + ++ W G+ + Sbjct: 154 LRRVGRQRRLDPASASHSGTQSPAASADAEASTDLGEELRAGPLRLLPEAHRSFWAGREV 213 Query: 160 DLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQ 219 LT EFRLL+ L PG+V+SR++L Y D R V+ RT+DSH++ +R K + + Sbjct: 214 ALTATEFRLLEVLIRRPGRVYSRDELGRQAYPDARHVSGRTLDSHVRRIRAKFRVHEVDP 273 Query: 220 SFIRAVYGVGYR 231 I V+GVGYR Sbjct: 274 --IETVHGVGYR 283 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 127/230 (55%), Gaps = 20/230 (8%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+VED+P + L YLR Y + + GD + Q DLILLD+ LPG DGL L Sbjct: 6 ILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDGLQL 65 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 REIR S++ ++MVT K +E+DR++ LE+GADDY+ KP++ RE++AR K +LRR R Sbjct: 66 LREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTLSAR 125 Query: 133 ELQQQDAESPLIIDEGRFQASWR------------GKMLDLTPAEFRLLKTLSHEPGKVF 180 E + + + A W G + LT EF LL + PG+V Sbjct: 126 EASEDENQKSF--------AGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVM 177 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 +R+ LL+++ +DRT+D + LRRK+E+ I V+G+GY Sbjct: 178 TRDNLLDYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGY 227 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 132/225 (58%), Gaps = 4/225 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+VED+ + +++ D+L + +Y+ G+ + + D+ILLDLMLP + G + Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC---K 129 + IR S +P+++ TAK + D++LGL +GADDYI KP+S E++AR+K +RR Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 130 PQRELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 R Q + LII+ ++ S G L+LT EF ++K L+ G+ FS+EQL N Sbjct: 123 SSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLYNA 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ + + +++HI LR KL + ++I+ ++G+GY+ E Sbjct: 183 IWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKME 227 >UniRef50_A9BXU4 Two component transcriptional regulator, winged helix family n=45 Tax=cellular organisms RepID=A9BXU4_DELAS Length = 342 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 132/237 (55%), Gaps = 7/237 (2%) Query: 4 LPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLM 63 LP +T IL+ EDEP++ +L YL + + G Q L PDL+LLD+ Sbjct: 107 LPFQPSTSLILVAEDEPEIADILCAYLARSDLRTVHAADGQQALELHHHLKPDLVLLDVQ 166 Query: 64 LPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKT 123 +P DG + EIRR D P++M+TA +++D+L+GL IGADDY+ KP++ EVVARV+ Sbjct: 167 MPRLDGWQVLSEIRRRGDTPVIMLTALNQDVDKLIGLRIGADDYVGKPFNAAEVVARVQA 226 Query: 124 ILRRCKPQRELQQQDAES-PLIID----EGRFQASWRGKMLDLTPAEFRLLKTLSHEPGK 178 +LRRC R + ++ P +D E Q + +LT EF LL +L P + Sbjct: 227 VLRRCGQGRLRDTKLLQAGPFRVDLDSREVSVQVQGATHVPELTVTEFNLLASLVRSPRR 286 Query: 179 VFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 VFSR +LL + + +RT+DSHI LR+KLE L Q +V VGYR D Sbjct: 287 VFSRAELLLSCLPEGHTL-ERTVDSHISKLRKKLEGL-GLQGMPDSVRSVGYRLGMD 341 >UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JIF2_OLICO Length = 241 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 131/234 (55%), Gaps = 18/234 (7%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP-GTD 68 T RIL+V+D+P+L + +L YA G+ + + P DLI+LDL P G D Sbjct: 3 TQRILMVDDDPRLCGFVSKFLTREGYATEFAFDGNAMQRALANVPFDLIILDLSFPNGED 62 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G+TL R+IR D P+VM++ + E +D+++ LEIGADDY+ KP+ PRE++AR++T+LRR Sbjct: 63 GITLARDIRTRYDTPLVMLSGRHETVDKIICLEIGADDYLTKPFEPRELLARIRTVLRRA 122 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWR------------GKMLDLTPAEFRLLKTLSHEP 176 +P + AE +I+ G WR + + LT EF LL L Sbjct: 123 RPTPQRSAAPAEKDIILFAG-----WRLDLGRRELFSPDDEAVVLTSQEFHLLAALVQRA 177 Query: 177 GKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 G+V +R+Q+L+ + + + DR+ID I LRRKL + I+ V G GY Sbjct: 178 GRVLTRDQILDLIANRHWTPFDRSIDVLIGKLRRKLNDNNRANQIIKTVRGAGY 231 >UniRef50_A6VRR3 Two component transcriptional regulator, winged helix family n=2 Tax=Gammaproteobacteria RepID=A6VRR3_MARMS Length = 243 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 129/227 (56%), Gaps = 8/227 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+V+D + + L Y Y + + + + DLILLD+ LPG DGLT Sbjct: 7 KILVVDDSSVIRETLESYFAEEGYTVSGADTAEAAEQLLSEQEFDLILLDIRLPGKDGLT 66 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 L RE+R S++ I++VT K ++IDR++GLE GAD+Y+CKP++ REV+AR K ++RR + Q Sbjct: 67 LTRELRSRSEVGIILVTGKQDDIDRIIGLECGADEYVCKPFNAREVLARGKNLIRRVRNQ 126 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKML--------DLTPAEFRLLKTLSHEPGKVFSRE 183 REL ++ E P+ G +Q ++L LT EF+LL L G +R+ Sbjct: 127 RELAKKPIEEPVFRTIGTWQLDTSRRVLLKSDRSVSQLTEGEFQLLLALKANEGVALTRD 186 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 QL++ + + TDRTID I +RRKL I V+GVGY Sbjct: 187 QLMDRIKNRTWNATDRTIDVLIGRIRRKLSEDPHCPQMIITVHGVGY 233 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 130/235 (55%), Gaps = 8/235 (3%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 + RIL+ ED+P + + L+D L Y G++ L ++ DL LLD+M+PG + Sbjct: 2 DASRILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCN 61 Query: 69 GLTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 G +CRE+RR + I+M+TAK EEID+++GLE+GADDYI KP+ E+ AR+ +LRR Sbjct: 62 GYDVCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRR 121 Query: 128 CK-----PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + EL A P ID ++ + LT E +LL+ P + R Sbjct: 122 SRRTAPGAAGELPSTLAIGPATIDRKTYRGCLGTRNFRLTAREMKLLEAFYRHPDEALPR 181 Query: 183 EQLLNHLYD-DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 LLN + DY+ T RT+D HI LR+K+E A I V+G+GYR+ A + Sbjct: 182 NTLLNLAWGIDYQGTT-RTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYRYVAGS 235 >UniRef50_UPI00016C030B two-component system response regulator n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C030B Length = 227 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 132/225 (58%), Gaps = 9/225 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +I I +D+ + ++ +L+ + Y+ ++ GD +L + P D+++LD+M+PGTDG+T Sbjct: 2 KIYIADDDEDIRGIIGSFLKNSGYSVSVFETGDALLAEFLKXPSDMVILDVMMPGTDGVT 61 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C +IR S++PI++V+AK EIDR+ G+ +GADDY+ KP++P E+V RV I RR Q Sbjct: 62 ICNKIRSKSNVPIIIVSAKDSEIDRINGITMGADDYLIKPFAPMELVVRVGAIFRRMSLQ 121 Query: 132 RELQQQDAESPLIIDEGRFQASWR-----GKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 Q +A+ L + + S++ G+ LTP EF LL + + SRE+LL Sbjct: 122 SSNQSNNAD-ELTYGDIKLNTSFKEXFCNGEAFALTPTEFALLSYMFANQSRAVSREELL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 +++D + D +K LR+KL + + +V+G G++ Sbjct: 181 KNVWDSEFSNDTKVCDDVLKRLRKKLANTTVR---VISVWGYGFK 222 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 132/227 (58%), Gaps = 6/227 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILI++DE ++ LL D L +G + + ++ P DLI+LD+M+P DG Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEMP-DLIVLDIMMPDIDGYE 61 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR+IR PIV ++AK E+DR+ G +G DDY+ KP+S +E++AR+ LRR K Sbjct: 62 VCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKRA 121 Query: 132 RELQQQDAESPL-----IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 L ++ + L ID + +G + LT EF +L+ LS PG+VFS+EQ+ Sbjct: 122 ILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQIY 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ T+ HIKN+R K+E+LD + +I+ V+G+GY+WE Sbjct: 182 EKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWE 228 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 135/232 (58%), Gaps = 8/232 (3%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 N +LIVEDE ++ + YL+ Y S+G + L + L ++D+M+P D Sbjct: 2 NFYNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMD 61 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G+T+ ++R D P++M+TAK EE+D++LGL IGADDY+ KP++P E++ARV + LRR Sbjct: 62 GITMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRY 121 Query: 129 KPQRELQQQDAESPLIIDEGRFQAS-------WRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 + + I G + + G+++ +TP EF++L+ L PG+VFS Sbjct: 122 SKYLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFS 181 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 E++ ++++ + TD T+ H++N+R K+E +++ V+GVGY+ E Sbjct: 182 AEEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIE 232 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 122/220 (55%), Gaps = 1/220 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+L+VED+P + ++ YLRAA + G L + PDLI+LD MLPG DG Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR IR D+PI+++TA +R+ GLE GADDYI KP+SPRE+V RV++ILRR Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + +D G+ L LT EF LL L PG+ FSREQLL ++ Sbjct: 161 LTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVW- 219 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 + T+ ++ LR K+E+ + + V+GVGYR Sbjct: 220 GWEFGDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYR 259 >UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax=Proteobacteria RepID=Q3KAS5_PSEPF Length = 235 Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 126/219 (57%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+L+VED+ +L L+ +L Y + GD + + P +++LDLMLPG GL Sbjct: 8 RVLLVEDDERLAALIAHFLEQHGYEVRTVHRGDLAVAAFLEFKPKVVVLDLMLPGQSGLH 67 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CREIR SD PIV++TAK +++D +LGLE GADDY+ KP P ++AR++ + RR P Sbjct: 68 VCREIRSVSDTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQVPD 127 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + LIID + G++++LT EF LL L+ GK+ SR+ +LN + Sbjct: 128 SGVVSSLEFGNLIIDRSCREVRLAGELIELTTMEFELLWLLASAAGKILSRDDILNRMRG 187 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 +R++D +I LR KL+ E I+ V+G GY Sbjct: 188 IAFDGLNRSVDVYISKLRNKLKDNPREPVCIKTVWGKGY 226 >UniRef50_D0KVI4 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVI4_HALNC Length = 233 Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 136/226 (60%), Gaps = 12/226 (5%) Query: 13 ILIVEDEPKLGQLLIDYLRAASY---APTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 IL+VED+ + + +I L + TL++ G L +R DL +LD+ LP +G Sbjct: 5 ILLVEDDRPIAENVILALARENIDCQHVTLVADG---LARLRSGGFDLAILDVGLPDGNG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 LCR +R FSDIPI+ +TA+ +EIDR++GLEIGADDY+ KP+SPRE+ ARVKTILRR Sbjct: 62 FDLCRLVRGFSDIPIIFLTARSDEIDRVVGLEIGADDYVLKPFSPRELAARVKTILRRSP 121 Query: 130 PQ-----RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 ++ ++DE R ++ + LDL+ E+ +LKT++ P +VFSR + Sbjct: 122 ASLATSSASPSPSSIQTAFVVDEERAVVLFKSRPLDLSRTEYLILKTMAARPERVFSRAE 181 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 L++ +R++D+HIK+LR KL +L + IR G+GY Sbjct: 182 LMDA-AGLAAASLERSVDTHIKSLRAKLTALATDSDPIRTHRGLGY 226 >UniRef50_B6BUZ2 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BUZ2_9PROT Length = 233 Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 131/226 (57%), Gaps = 5/226 (2%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 N P ILIVEDE + +++ L ++ P + + ++++ DLILLD MLPG D Sbjct: 2 NKPNILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLPGMD 61 Query: 69 GLTLCREIRRFSD---IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G+ + IR S+ IP++M+TAK EE +++ G ++GADDY+ KP+S +E++AR+K IL Sbjct: 62 GIDFLKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAIL 121 Query: 126 RRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 RR KP +Q L + + + K + L P EF+LL L +V SRE + Sbjct: 122 RRKKPDF-FPKQIKHGNLQVHPDSHEVFHQSKFIKLGPTEFKLLYLLCMNKNRVLSREII 180 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 ++ ++++ + RTID H+K LR L+S E S I + G GY+ Sbjct: 181 VDKIWNNESEIDARTIDVHVKRLRSTLKSHGIENS-IETIRGAGYK 225 >UniRef50_P0A5Z5 DNA-binding response regulator mtrA n=76 Tax=Bacteria RepID=MTRA_MYCBO Length = 225 Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 134/222 (60%), Gaps = 6/222 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+V+D+ L ++L LR + +I G Q L VR+ PDL+LLDLMLPG +G+ Sbjct: 4 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC--K 129 +CR +R S +PIVM+TAK + +D +LGLE GADDYI KP+ P+E+VARV+ LRR + Sbjct: 64 VCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDE 123 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 P L D E ID + + G+ + LTP EF LL L+ +P +VF+R+ LL + Sbjct: 124 PAEMLSIADVE----IDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQV 179 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 + R ++ H++ LR K+E + + V GVGY+ Sbjct: 180 WGYRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 136/229 (59%), Gaps = 9/229 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+V+D+P + +L+ L Y ++ L V D+ ++D+MLPG DG Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR- 127 L R++R ++ + P+V ++AK EE D++LGLE+GADDYI KP+S RE++AR+K + RR Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 128 ---CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + + E ++ L ID R++ + + LTP EF LL+ L+ GKVFSR+ Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208 Query: 185 LLNHLYD-DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 LL+ L+ DY T RT+D HI+ LR K+E + +I V G GY++ Sbjct: 209 LLDKLWGYDYYGDT-RTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 134/226 (59%), Gaps = 8/226 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LIVED + ++ +YL Y + S+G + L R PDL+LLD+M+PG DGL Sbjct: 25 VLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGLEF 84 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK--- 129 R R +P++ +TA+ E+D++LGLE+GADDY+ KP+S E++ARV+ LRR Sbjct: 85 LRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSSEPL 144 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 P L+ + E +D RG+ +DLT +EF L+ PG+VF+R +LL L Sbjct: 145 PNAVLRAGELE----LDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQL 200 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ + ++RTID H++NLR K+E+ + I V+GVGYR D Sbjct: 201 QEEA-LGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPD 245 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 141/235 (60%), Gaps = 10/235 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+V+D+ +L LL YL + +++ +Q+ + + L++LDLMLPG DGL+ Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 72 LCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +CR +R S+ +PI+MVTAK EE+DR++GLEIGADDYI KP++PRE++AR++ +LRR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA- 124 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKM-------LDLTPAEFRLLKTLSHEPGKVFSRE 183 EL ++ +I G+F+ + + + LT EF +LK L P + SR+ Sbjct: 125 -NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 +L+N +R+ID I LRR +E A +I+ V+G+GY + D + Sbjct: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 128/228 (56%), Gaps = 6/228 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P IL+VED+ + L+ YLRA + + G ++ + DLI++DLMLP DGL Sbjct: 15 PSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGL 74 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +LCR++R S +PI+M+TA+ E+IDR++GLE+GADDY+ KP++PRE++AR+ +LRR Sbjct: 75 SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQAS 134 Query: 131 QRELQQQDAESPLIIDEGRFQASWR------GKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + + D R R G + LT AEF LL+ G+V SRE Sbjct: 135 ALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSREV 194 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 LL DR+ID + +RRK+E+ A+ I+ V GY + Sbjct: 195 LLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMF 242 >UniRef50_Q2BRQ1 Transcriptional regulatory protein CpxR (Fragment) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BRQ1_9GAMM Length = 235 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 137/233 (58%), Gaps = 5/233 (2%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP-DLILLDLMLPGT 67 + R+L+V+D+ +L +L+ DYLR Y + D+ ++++ L++LD+M+PG Sbjct: 2 DKQRLLMVDDDVELCELIGDYLRHEGYLIEFAHNADEACEQLKRSERFALMILDVMMPGR 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 GL L ++IR IP++M+T + E+IDR+LGLE+GADDY+ KP +PRE++AR++ +LRR Sbjct: 62 TGLELLQQIRPKVQIPVIMLTGRGEDIDRILGLEMGADDYLSKPCNPRELLARIRAVLRR 121 Query: 128 CKPQREL----QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 +PQ+ + + +D G + G++L+LT EF +L L G V +E Sbjct: 122 AEPQQRTTLFPDSLVEHAGVTLDPGLREVRINGELLELTGTEFNVLAYLIANAGSVLEKE 181 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 QL + DR ID H+ +R+KL ++ I+ + GVGY++ DA Sbjct: 182 QLTELVLHRKLAAYDRAIDVHVSRVRQKLAKHLSDAELIKTIRGVGYQFVKDA 234 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 138/228 (60%), Gaps = 6/228 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPD--LILLDLMLPGTDG 69 +ILIV+D+ ++ +LL Y++ Y P G + + + T PD L++LD+M+P G Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLV-TNPDIALMILDIMMPNMSG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 + + +E+R+ S IPI++V+AK ++D++ GL GADDY+ KP++P EV+ARVK++LRR + Sbjct: 61 MDVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 120 Query: 130 PQRELQQQDA--ESPLIIDEGRFQ-ASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + D PL I + + + GK + LT EF +L L+ P +VFS +++ Sbjct: 121 NEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIF 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ +V+ +T+ H+ +LR K+E + I V+GVGY+ EA Sbjct: 181 ERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVEA 228 >UniRef50_B5XQM1 DNA-binding response regulator n=30 Tax=Bacteria RepID=B5XQM1_KLEP3 Length = 231 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 126/226 (55%), Gaps = 7/226 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+LI+ED+ +L YLR +Y + G L + PDLILLD+MLPG +G Sbjct: 5 RVLIIEDDADAAGVLEAYLRRENYDVVITGDGLSGLDMAHRWKPDLILLDVMLPGLNGTE 64 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 + +RR +D+P++MVTA + DR+ L GADDY+ KPY P EVVARV+ +LRR Sbjct: 65 VLAGLRRKNDVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRSNQT 124 Query: 132 RELQQQDAESPLIIDEGRFQAS-----WRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 ++ L ++ AS + LDLTP EF LL TL P + FSR+ LL Sbjct: 125 ETKEEILRWQSLEVNVTAIVASIIDGDTTPRTLDLTPTEFSLLTTLMRSPSRPFSRQHLL 184 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 H + + +R +D+HI NLR+KLE+ + V GVGYR+ Sbjct: 185 EHCLPESEAL-ERVVDTHIYNLRKKLEAAGISGVLVN-VRGVGYRF 228 >UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAZ5_GEMAT Length = 239 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 128/233 (54%), Gaps = 7/233 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+V+DEP++ L+ +L A Y + G L R+ P LI+LDLMLPG G Sbjct: 10 RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFD 69 Query: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + ++R ++ ++M+TA+ EE DR+ GL +GADDY+ KP+SP E+V RV ILRR Sbjct: 70 VLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRT 129 Query: 129 KPQRELQQQD-AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + PL ID G+ ++LTP EF+LL TL+ G+V R LL Sbjct: 130 GSATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGHLLE 189 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV 240 +++ + RT+D H++ LR K L A I V G GYR A A R+V Sbjct: 190 TVWEAAPDIQTRTVDMHVQRLRSK---LGAAGELIETVRGFGYRLRASAPRLV 239 >UniRef50_A9BP07 Two component transcriptional regulator, winged helix family n=14 Tax=cellular organisms RepID=A9BP07_DELAS Length = 239 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 141/237 (59%), Gaps = 11/237 (4%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQ---TPPDL 57 M LP+ N PR+L+VED+P + + + L A + H Q+ Q PPD Sbjct: 1 MQGLPM-TNAPRVLLVEDDPAIARTVCYALERDGIA---VRHCLQLADARAQWQAQPPDA 56 Query: 58 ILLDLMLPGTDGLTLCREIRRF-SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPRE 116 +LLD+ LP +GL CRE+R+ + +P+++++A+ EE+DR+LGLE+GADDY+ KP+SPRE Sbjct: 57 LLLDVGLPDGNGLDWCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRE 116 Query: 117 VVARVKTILRRCKPQRELQQQDAESP---LIIDEGRFQASWRGKMLDLTPAEFRLLKTLS 173 +VAR + +LRR + + A ID + +G L+LT E++LL+ L Sbjct: 117 LVARTRALLRRVQRLQPAPTASAAPADALFSIDPQGQRVRMQGVPLELTRREYQLLRCLL 176 Query: 174 HEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 PG++ SRE LL+ ++ TDRT+D+H+K LR KL + +Q FI G+GY Sbjct: 177 ERPGRILSREFLLDSIWGQDSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGY 233 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 127/233 (54%), Gaps = 11/233 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILI++DE ++ L+ YL + ++G L PDLI+LD++LP T+GL Sbjct: 5 KILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLE 64 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LC+ +R+ ++ PI+ ++ K ++D++LGL +G DDYI KP+SP E+VAR+ LRR Sbjct: 65 LCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRR---N 121 Query: 132 RELQQQDAE--------SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 R L Q + L ID + K + LT EF +L LS P VFS Sbjct: 122 RILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLT 181 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 QL +H++ + RT+ HI NLR+K+E A I + G+GY+ + A Sbjct: 182 QLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDTTA 234 >UniRef50_Q47ZK7 DNA-binding response regulator n=2 Tax=Alteromonadales RepID=Q47ZK7_COLP3 Length = 237 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 129/218 (59%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILI+ED+ ++ +L YL++ Y T+I+ G + +++ PDLILLDLMLPG DG L Sbjct: 15 ILIIEDDKEIARLTEIYLQSTGYETTIIADGSLAIAMIKKLSPDLILLDLMLPGVDGFEL 74 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C++ R F + PI+++TA +++ + L++GADDY+ KP P + AR++ +LRR K Sbjct: 75 CKQAREFYNGPIIVLTAMEDDLSEVSLLKLGADDYLRKPAKPHIMSARIEALLRRAKVNN 134 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 E Q+ + L+I+ + ++DLT +EF +L L+ + G+ SRE+ ++ L Sbjct: 135 EKVTQELPNKLLINRDTLSVTLNNALVDLTNSEFDMLVLLADKSGQTVSREECIHSLRGI 194 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 VT+R+ID I LR+KL + I+ + GY Sbjct: 195 DFDVTNRSIDMRISALRKKLNDEKSPYKLIKTIRNKGY 232 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 130/233 (55%), Gaps = 7/233 (3%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 ++ + +ILI++DE + LL YL+ +Y + + DL +LD+MLP Sbjct: 15 VENMSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLP 74 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 +G +LC+ IR+ PI+M+TAKIEE D++ GL +GADDY+ KP+ P EVVARVK L Sbjct: 75 DMNGFSLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQL 134 Query: 126 RRCKP------QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 RR K ++ + + + L ++ + G+++ LTP EF +L L G V Sbjct: 135 RRYKKYSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNV 194 Query: 180 FSREQLLNHLY-DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 S E+L + ++ D+Y TI HI++LR KL +I+ ++GVGY+ Sbjct: 195 VSIEELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYK 247 >UniRef50_C7N3P1 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N3P1_SLAHD Length = 242 Score = 149 bits (377), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 130/237 (54%), Gaps = 10/237 (4%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M P + P+IL+V+D+ + L+ + L +A G L + P DL+L+ Sbjct: 1 MNANPNSASRPKILVVDDDQGITTLVAEVLASAGMDAAACHSGYDALDVFAKEPFDLVLI 60 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 D+M+PG DG LC +R+ +D PIV +TAK E D ++GL +GADDYI KP+ PRE+VAR Sbjct: 61 DIMMPGMDGFELCANLRQVTDAPIVFLTAKDGESDLVVGLSLGADDYIVKPFRPRELVAR 120 Query: 121 VKTILRR-----CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHE 175 ++ LR +P + +D + I+ +A G LDLTP EF +L L+ Sbjct: 121 IRARLRTPSAGAFEPSDVVVTRDFD----INRRTHEAMLHGCRLDLTPKEFAVLLHLAER 176 Query: 176 PGKVFSREQLLNHLYDD-YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 G+ S L + + Y T+ HI++LR+K +D+ Q+FI V+GVGYR Sbjct: 177 AGEPVSARDLYERAWGETYDASAGNTVMVHIRHLRKKCADVDSSQTFIDTVWGVGYR 233 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 149 bits (376), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 136/231 (58%), Gaps = 11/231 (4%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 + RILI+EDE + LL L + + G L + PDL++LD MLP Sbjct: 2 DKTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDRS 61 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 GL +C+++ +IPI+M+TA+ + D++LGLE+GADDYI KP+ REVV R++TILRR Sbjct: 62 GLDICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRL 121 Query: 129 KPQRELQQQDAES-----PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + ++ A S +++ + +G+ +DLTP EF LL L G++F+R Sbjct: 122 AQAQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRA 181 Query: 184 QLLNHLYDDYRVVTD-RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 +LL ++ Y D RT+D+HI+ LR+KL++ D I V+G+GY++E Sbjct: 182 ELLESVW-GYDFPGDMRTVDTHIQRLRKKLDAAD----LITTVFGIGYKFE 227 >UniRef50_Q1LHM7 Two component transcriptional regulator, winged helix family n=25 Tax=Proteobacteria RepID=Q1LHM7_RALME Length = 261 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 134/231 (58%), Gaps = 17/231 (7%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+LIV+D+P++ +L +YL G + + + DL++LDL LPG +GLT Sbjct: 28 RLLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSLPGENGLT 87 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LCREIR S++P++M+TA+ E DR++GLE+GADDY+ KP+ RE+VAR+ T+LRR + Sbjct: 88 LCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSRA- 146 Query: 132 RELQQQDAESPLIIDEGRFQASWR------------GKMLDLTPAEFRLLKTLSHEPGKV 179 ++++ +P E RF A+WR ++ L+ AEFRLL T P +V Sbjct: 147 -DVRRPAPAAP--GHEVRF-AAWRLNTTLRQLVDAEDTVVPLSNAEFRLLLTFIEHPNRV 202 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 RE L+N V DR+ID + LR+KL + + IR V G GY Sbjct: 203 LDREMLINTARGRDLDVFDRSIDLLVSRLRQKLRDDPRDSALIRTVRGEGY 253 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 127/219 (57%), Gaps = 4/219 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 + LIVED+ L + L R + + G Q L + D+I+LD+++P DG+ Sbjct: 4 KALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVK 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+++R S+IPI+M+TAK + D+L GLE GADDYI KP+S +E++ RVKT+LRR Sbjct: 64 VCKQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKV 123 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 +E ++ L +D F+ ++GK ++LTP EF LLK L+ P K RE LLN ++ Sbjct: 124 QE--EKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWG 181 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 +D +IKN+R KLE D I + G GY Sbjct: 182 IASDYDSNIVDVYIKNIRNKLE--DKPPKLILTIRGRGY 218 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 137/221 (61%), Gaps = 3/221 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL++ED+ + L YA +++G+ L + P D+ILLD+MLP DG+T Sbjct: 2 KILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGIT 61 Query: 72 LCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +CR +R + + PI+++TAK D ++GLE GADDY+ KP+ E++AR++ + RR Sbjct: 62 VCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRR--G 119 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Q+ L L++++ + +++G++L LTP E+ LL+ P +VFSR+ +++ ++ Sbjct: 120 QQVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIW 179 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 +V + TI SHIK LR+KL+++ Q+ I+ VYG GYR Sbjct: 180 TLDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYR 220 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 7/111 (6%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +++++D+P ++L L + +S+ Q P + T PDL++LDL +P GL L Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 73 CREIR---RFSDIPIVMVTAK--IEEIDRLLGLEIGADDYICKPYSPREVV 118 C+ +R RF +PI+ ++ E I ++L GAD Y+ K + E++ Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVH--GADCYLPKTIAVEELI 618 >UniRef50_A9AXY0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXY0_HERA2 Length = 225 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/204 (38%), Positives = 123/204 (60%), Gaps = 1/204 (0%) Query: 29 YLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 YL A + L S G L V+Q P L++LDLMLP DGL + + IR+ S+ PI+MVT Sbjct: 21 YLEQAGFTTYLASDGLAGLALVQQHQPSLVVLDLMLPKLDGLAVFKTIRQTSNTPIIMVT 80 Query: 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEG 148 A+ + +R+ GLE+GADDY+ KP++ RE+VARV+ +LRR +P + Q P+ +D Sbjct: 81 ARSSDEERIHGLELGADDYVGKPFNARELVARVRAVLRRSQP-IQASQMLKRGPIELDLE 139 Query: 149 RFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNL 208 + + + ++L+ + LL T P ++ SREQLL ++ DR++D+HI L Sbjct: 140 QHSCTVNQQPVELSKIQLALLATFMRHPNQILSREQLLEAVFAGDYAGFDRSLDAHIARL 199 Query: 209 RRKLESLDAEQSFIRAVYGVGYRW 232 R+++E +I VYG+GY++ Sbjct: 200 RQRIEHDRTNPQYIVTVYGLGYKF 223 >UniRef50_A9ANV0 Two component transcriptional regulator, winged helix family n=72 Tax=Proteobacteria RepID=A9ANV0_BURM1 Length = 262 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 125/233 (53%), Gaps = 11/233 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+VED+ +L L+ YLR Y + HGD +P + T PDL++LD+ LPG DG Sbjct: 31 RILLVEDDVRLSTLIAGYLRKNDYEVDTVLHGDAAVPAILSTRPDLVILDVNLPGKDGFE 90 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR+ R+ D I+MVTA+ E D LLGLEIGADDY+ KP PR ++AR+K LRR P Sbjct: 91 ICRDARQHYDGVIIMVTARDEPFDELLGLEIGADDYVHKPVEPRILLARIKAQLRRA-PA 149 Query: 132 RELQQQDAESPLIIDEGRFQASWR--------GKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 R + A P G+F G DLT AEF LL L G+V SR+ Sbjct: 150 R--VAEGAPQPERYTFGKFSIDRTDRSVVLPDGSTPDLTSAEFDLLWVLVCRAGEVVSRD 207 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 L+ L DRTID I LRRKL + I+ + GY++ A Sbjct: 208 DLMLQLRGVEFDGLDRTIDGRISKLRRKLRDDASNPQRIKTIRSKGYQFSKHA 260 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 7/225 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++++V+DE + +L L+ Y G+ + + + PD++LLD+MLPG DG+ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CRE+R+ ++PI+M+TAK EID++LGLE+GADDY+ KP+S RE++ARVK LRR Q Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123 Query: 132 RELQQQDAESPLIIDE-----GRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + + I + + RG+ ++LT EF L LS G+V +RE LL Sbjct: 124 PAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183 Query: 187 NHLYDDYRVVTD-RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 ++ Y D RT+D I+ LR K+E + +I GVGY Sbjct: 184 QTVW-GYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_A9ASF4 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=A9ASF4_BURM1 Length = 253 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 138/242 (57%), Gaps = 12/242 (4%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 D N P +L+V+D+P + +LL YL T+ + G + + DL++LDL +PG Sbjct: 3 DANLPHVLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPG 62 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DG+ + RE+R S++PI +V+ K +E DR++ LE+GADDY+ KP+S RE++ARV+ +LR Sbjct: 63 EDGVQIARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLR 122 Query: 127 RCKPQREL--QQQDAE----SPLIIDEG-RFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 R + +DA S ++ G R G ++LT EF LL PG+V Sbjct: 123 RAGATAPATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGRV 182 Query: 180 FSREQLL--NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 SR+QLL + LYDD V DR+ID I LRRK+E + FIR V G GY + Sbjct: 183 LSRDQLLESSRLYDD---VYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGYVLDVPVT 239 Query: 238 RI 239 R+ Sbjct: 240 RL 241 >UniRef50_A8GHG0 Two component transcriptional regulator, winged helix family n=11 Tax=Enterobacteriaceae RepID=A8GHG0_SERP5 Length = 226 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 133/223 (59%), Gaps = 3/223 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+V+D+ +LG +L +YL + TL+ G + ++LD+MLP G+ Sbjct: 2 KILLVDDDLELGTMLSEYLTGEGFNATLVLTGKAGVEGALSGDYTAMILDIMLPDMSGID 61 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 + R++R+ S +PI+M+TAK + IDR++GLE+GADDY+ KP PRE+VAR++ +LRR + Sbjct: 62 VLRDVRKKSRMPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDER 121 Query: 132 -RELQQQDAES--PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 E+ + A + L ++ + WRGK DLT +EF LL+ L P +V S+++L Sbjct: 122 PDEVDDEIAINFGELTLNPSTRSSEWRGKAFDLTASEFNLLELLLRAPERVVSKDELSEK 181 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 R DR++D HI N+R+KL +L I V +GYR Sbjct: 182 GLGRPREAYDRSVDVHISNIRQKLGALTDNALSIETVRSIGYR 224 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/224 (34%), Positives = 132/224 (58%), Gaps = 3/224 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+ EDE + ++ L+ A Y +G + L Y Q D++LLD+M+P DG Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 72 LCREIRRFSDI-PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C + R ++ I+M+TA+ E D+++GL +GADDYI KP+SP E++AR++++LRR + Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122 Query: 131 QRELQQ--QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 R +Q + P ID G + G +++TP E+ LL +V SR++LL+ Sbjct: 123 LRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELLDA 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ + +T+D +I+ LR+K+E AE FI ++G GY+W Sbjct: 183 VWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKW 226 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 134/221 (60%), Gaps = 4/221 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL++ED+P L +L+ LR Y ++ G + Y + T DLIL+D+ LP DG+T Sbjct: 2 KILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGIT 61 Query: 72 LCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 LCR +R + S +PI+++TA+ ++DR+ GL+ GADDY+ KP E+ ARV+ +LRR Sbjct: 62 LCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGSE 121 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + Q L +D Q ++ + L+LTP E+ LL+ PG+VFSR QL+ HL+ Sbjct: 122 TKTPILQVGN--LQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLW 179 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 + ++ +H+K LR+KL++ A +I +YG+GYR Sbjct: 180 TFDDPPLEESVKAHVKGLRQKLKAAGAV-DWIENIYGIGYR 219 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 T +L+V+D+P + ++ L+ T I++ ++ + T PDL++LD+ +P T G Sbjct: 379 TVNVLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSG 438 Query: 70 LTLCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 + LC+ +R + +PI+ +TA + +GADD++ KP E++ R I+ Sbjct: 439 IELCQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTR---IIN 495 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQAS 153 R + R +Q ++ PL + Q+S Sbjct: 496 RLERTRLIQSLASKDPLTGLFNQLQSS 522 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 133/227 (58%), Gaps = 6/227 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL++ED + L+ L Y T S G + L DLI+LD+MLP DGL Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 72 LCREIRRFSDI-PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK- 129 +C+ +R + PI+M+TAK E DR++GLE GADDY+ KP+S RE+ ARVK LRR Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 130 PQRELQQQDAES----PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 Q+E Q ++ L ID+ + + + K + LT EF LL ++ PG+VFSRE+L Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L+ ++ + T++SHI LR KLE+ + ++ V+GVGY++ Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 133/230 (57%), Gaps = 17/230 (7%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+D+ + +LL D+L S+ ++ +Q P ++LD+M+PG +G L Sbjct: 7 ILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGFEL 66 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR IR S +PI+ ++A+ +++D++ GL +G DDYI K SP E+VARVK +LRR +R Sbjct: 67 CRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSATRR 126 Query: 133 ELQQQDAESPLIIDEGRFQASWR-------GKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 ++++ ++D GR + + G + LTP EF LL+ + P VF+ +QL Sbjct: 127 PMEER------VLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQL 180 Query: 186 LNHLYDDYRVVTDR-TIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 L +D V DR TI H+ LR K+E+ + F+ V+GVGYR+E Sbjct: 181 LAKFWDG---VGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFEG 227 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 129/220 (58%), Gaps = 2/220 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+VED+ L + L A + S G L R+T PDLI+LD+MLPG DG ++ Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR + + + +PIV++TA +E R+ GLE+GA DY+ KP+S E++ARV+ ILR + QR Sbjct: 64 CRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQR 123 Query: 133 ELQQQD--AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + + P+ +D + ++ + ++L+ EF LL L H G SR+ LL ++ Sbjct: 124 QTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERVW 183 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 + ++RTID H++ LR KLE A + IR V G+GY Sbjct: 184 GSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGY 223 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 131/231 (56%), Gaps = 1/231 (0%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLI-SHGDQVLPYVRQTPPDLILLDLMLP 65 D T +ILIV+DE ++ LL L+ + + G + RQ PDLILLD+MLP Sbjct: 7 DVYTKKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLP 66 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DG ++C +IR+F+ +PI ++AK E++D++LGL IG DDYI KP+SP+EV ++K Sbjct: 67 DLDGYSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFF 126 Query: 126 RRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 RR + + + + IDE + G +L LT EF +L L P ++FS+ +L Sbjct: 127 RRNQYKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARL 186 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 ++ + + D + H+++LR K+E ++ +++ V G+GY+ Sbjct: 187 YEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLNTKG 237 >UniRef50_B0S1J7 Two-component response regulator n=16 Tax=Clostridia RepID=B0S1J7_FINM2 Length = 239 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 132/228 (57%), Gaps = 13/228 (5%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIVEDE + YL + G + + + T +I+LDLMLP G Sbjct: 10 KILIVEDEKNISNAEKKYLEVEGFRVEQAFDGQEAIDMINSTDYSMIILDLMLPKISGEK 69 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 + IR ++ P++MVTAKI+E + L GL++GADDYI KP+S + +V +VKTILRR + + Sbjct: 70 VMEVIRSRTETPVIMVTAKIDEDEILEGLKLGADDYITKPFSLKILVQKVKTILRRVE-K 128 Query: 132 RELQQQDAESPLIIDEGRFQASW-------RGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 L + D + D GR S+ G+ + LT EF+++KTL P K+F+R++ Sbjct: 129 LGLPKSD---KIYFDNGRVSISFDDNTFIKDGESISLTSNEFQIIKTLFSNPNKIFTRDE 185 Query: 185 LLNHLYD-DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 ++ + DY DR ID+HIKN+R K+E + +I+ +YGVGY+ Sbjct: 186 IIELSFGYDYEAF-DRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGYK 232 >UniRef50_Q6MA20 Putative two-component response regulator phoP n=2 Tax=Parachlamydiaceae RepID=Q6MA20_PARUW Length = 229 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 134/228 (58%), Gaps = 8/228 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL++EDE + L+ A Y L G + + PD+I+LD+MLPG +GL Sbjct: 5 KILLIEDEEDIASLIKLQAELAGYKVHLEMDGLNGFLAIEREKPDVIILDIMLPGLNGLD 64 Query: 72 LCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 +CR+I+ +IPI++++AK EE+D +LGLE+GADDY+ KP+S + + +R+K ++RR Sbjct: 65 VCRKIKSNPDLENIPIIIISAKSEELDVVLGLELGADDYVAKPFSLKVLFSRIKAVMRRG 124 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 K + + ++ R+ + K + LT +EF +L+ L GKV +R QLL+ Sbjct: 125 KEGEKEAKTLVFGEYTMEVDRYLLRKKDKSIALTLSEFGILRRLLLNRGKVLTRNQLLDD 184 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLE-SLDAEQSFIRAVYGVGYRWEAD 235 + +D + DR ID HI +LR+KL + D I V GVGYR++ D Sbjct: 185 VQNDEAFIIDRNIDVHIASLRKKLGPNFDG----IETVRGVGYRFKDD 228 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/236 (38%), Positives = 144/236 (61%), Gaps = 20/236 (8%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYV-----RQTPPD-----LILLDL 62 IL++EDE + + ++ L+ Y + S G + L + R+T P+ LI+LD+ Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 63 MLPGTDGLTLCREIRR-FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 MLPG +GL LCR IRR +PI+M++AK EIDR++GLEIGADDY+ KP+ RE++AR Sbjct: 84 MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143 Query: 122 KTILRRCKPQRE-----LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEP 176 + +LRR + Q+ L+ +D L + +A+ RG+ L+L+P E++LL+ P Sbjct: 144 RALLRRTRIQQATLPPVLRFRD----LCLYPQECRATLRGEELNLSPKEYKLLELFMRHP 199 Query: 177 GKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +V+ REQLL+ ++ V +T+D HI+ LR K+E+ + +I V G GYR+ Sbjct: 200 RRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_A8UXR4 Two component transcriptional regulator, winged helix family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UXR4_9AQUI Length = 225 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 137/225 (60%), Gaps = 6/225 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIVED+P + +L YL + S G + + PD+++LDLMLP TDG Sbjct: 4 KILIVEDDPLIADMLKRYLEKEGFKTYWDSTGAEAVKSFETLKPDVVILDLMLPDTDGFE 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LC+ + +D ++++TA+ + D+++GLE+GADDYI KP++ RE++ARVK +LRR K Sbjct: 64 LCK-LFSSTDSMLLILTARDADEDKIVGLELGADDYITKPFNMRELLARVKALLRRRKKL 122 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + L I G + +G+++DLTP EF +LK L + GKV SRE++++ +Y Sbjct: 123 SLSGETLRVGELEIHTGEMKVLLKGRLVDLTPKEFLILKKLLSKRGKVVSREEIVSEIYS 182 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSF---IRAVYGVGYRWE 233 +R +D++I +R KL ++ E+S+ I+ V G GYR+E Sbjct: 183 GDIPYYERIVDTYIYRIRTKL--MEIERSYAERIKTVRGFGYRFE 225 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/261 (37%), Positives = 144/261 (55%), Gaps = 36/261 (13%) Query: 1 MTELPIDEN-------------TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVL 47 MT P+DE+ RIL+VEDE + ++ L+ + + + G L Sbjct: 1 MTSNPLDESMESLTVVPPAASPASRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTAL 60 Query: 48 PYVRQ-TP--------PDLILLDLMLPGTDGLTLCREIRRFS-DIPIVMVTAKIEEIDRL 97 Y R +P PDL++LDLMLP +GL CR +RR +PI+M++AK E DR+ Sbjct: 61 NYFRSDSPEAGSVTENPDLVVLDLMLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRV 120 Query: 98 LGLEIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIID-EG--RFQASW 154 +GLEIGADDY+ KP+ RE+VAR + +LRR Q Q AE+P ++ EG F Sbjct: 121 VGLEIGADDYLTKPFGTRELVARCRALLRRS------QNQPAETPAVLRYEGLKLFPEEC 174 Query: 155 R----GKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRR 210 R + L L+P EFRLL+ P +V+SR+QLL ++ + +TID HI+ LR Sbjct: 175 RVLLDDRELTLSPKEFRLLELFMRHPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLRE 234 Query: 211 KLESLDAEQSFIRAVYGVGYR 231 K+E+ + S++ V G GYR Sbjct: 235 KIEANPSNPSYLLTVRGFGYR 255 >UniRef50_B3PFT8 AbfR arabinofuranosidase two component system response regulator n=26 Tax=Proteobacteria RepID=B3PFT8_CELJU Length = 232 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 129/227 (56%), Gaps = 13/227 (5%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+++D+ +L QLL +YL +A +I G Q + Q LI+LD+MLP G Sbjct: 3 KILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSGFD 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 + + +R+ S P++M+TAK + +DR++GLEIGADDY+ KP PRE+VAR++ ILRR Sbjct: 63 VLKILRQHSQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRRASIA 122 Query: 132 RELQQQDAE----SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR----E 183 E Q + E L + G A+W + + LT EF +L+ L G+V S+ E Sbjct: 123 -EANQPNVERLTSGKLSLHLGTRTATWDNQDVVLTGTEFSVLEILVRRAGQVISKDDMTE 181 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 Q LN Y DR+ID H+ N+R+K+ + + I V G GY Sbjct: 182 QALNRKLTPY----DRSIDVHVSNIRKKIALAGSTKDLIINVRGAGY 224 >UniRef50_UPI00003844D5 COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003844D5 Length = 221 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 125/218 (57%) Query: 14 LIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLC 73 +++ED+ LGQL+ DYL +A T ++ Q ++ + P ++LLDL LP DGL + Sbjct: 1 MVIEDDLALGQLMSDYLELGGFAVTHVTSAGQAFDFLARQMPAMVLLDLSLPDEDGLVVL 60 Query: 74 REIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRE 133 R +R +PI +V+ + + +R++GLE+GADD+I KP+ RE+VARV+ ILRR + Sbjct: 61 RRLRAVGSLPIAIVSGRDDSENRIVGLEMGADDFITKPFVGRELVARVQNILRRSQGGEA 120 Query: 134 LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDY 193 + + ++ E F +G+ + LTPAE +L+ L G+ SREQL++ + Sbjct: 121 KPALEIDGLVMRTEDHFVVGRQGERIALTPAESSVLRALIAANGRTLSREQLMDAHGNLD 180 Query: 194 RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 T R+ID I LR KLE + I V GVGYR Sbjct: 181 LAETTRSIDIVISRLRGKLERSRKTPTLILTVQGVGYR 218 >UniRef50_C8NC13 DNA-binding response regulator n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NC13_9GAMM Length = 219 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 127/221 (57%), Gaps = 6/221 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL++ED+P + L L + G L ++ D I+LD+ LP TDG L Sbjct: 4 ILLIEDDPAIADPLSYALAREQWQVVWHDTGIAALAALQAQRFDCIVLDVGLPDTDGFEL 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR IR+ P++ ++A+ EEIDR++GLE+GADDY KP+S RE+++R+K + RR Sbjct: 64 CRRIRQQWTTPLIFLSARNEEIDRIVGLELGADDYCGKPFSNRELISRIKAVCRRSN--- 120 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 + + S ++ S+ G LDLT E+RLL+ L PG+ F R+QL+N L+D Sbjct: 121 ---ETETASVWQHNDSAQTISYHGTTLDLTRYEYRLLRHLLAHPGQTFDRDQLVNTLWDH 177 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + +RT+DSHIK LR+KL ++ + IR G GY E Sbjct: 178 PDHIDNRTVDSHIKTLRQKLRAIAPDADPIRTRRGYGYHLE 218 >UniRef50_Q1J3D6 Two component transcriptional regulator, winged helix family n=4 Tax=Deinococci RepID=Q1J3D6_DEIGD Length = 244 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 131/228 (57%), Gaps = 7/228 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 P +LIV+D+P + ++L YLR + G Q L + Q D+ +LD MLPG G Sbjct: 15 VPTVLIVDDDPAILEILRVYLRQDGFRVLEAREGAQALSLLPQA--DVAVLDWMLPGMTG 72 Query: 70 LTLCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 L L R F ++P++M+TA+ E D+LLGLE GADDY+ KP+SPREVVAR+K +LRR Sbjct: 73 LELARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRRM 132 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + ++ + L +D A+ RG+ L L+ EF LL TL+ PG ++RE+LL Sbjct: 133 GVREVIEHGE----LHLDVRARAATLRGEALGLSKLEFDLLFTLAQYPGLAWTRERLLER 188 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 ++ +R +D HI LRRKL +I V GVGYR+ + Sbjct: 189 VWGVDYPRMERVVDVHITGLRRKLGDHAEHPRYIETVRGVGYRFRENG 236 >UniRef50_Q0SQL4 Two-component response regulator n=10 Tax=Firmicutes RepID=Q0SQL4_CLOPS Length = 233 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 137/230 (59%), Gaps = 11/230 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 IL+V+DE K+ ++L YL+ ++ S+G++ L DLILLDLMLP G Sbjct: 5 NILLVDDEEKIIEVLEAYLKKEGFSVFSCSNGEEALKIFDNNKIDLILLDLMLPDLSGEE 64 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+ IR S +PI+M+TAK EE D L G +IGADDY+ KP+S ++++AR+K I+RR P Sbjct: 65 VCKVIRAKSCVPIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRRSTP- 123 Query: 132 RELQQQDAESPLIIDEGRFQAS------W-RGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + L+ + G + + W R +++ LT EF +L LS P K+F+R++ Sbjct: 124 ---CPNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIFTRDE 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ + D DR IDSHIKNLR K+E + FI VYGVGY++E Sbjct: 181 IIELVLGDKSDSFDRVIDSHIKNLRGKIEENTRKPKFIVTVYGVGYKFEG 230 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 126/226 (55%), Gaps = 8/226 (3%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISH----GDQVLPYVRQTPPDLILLDLMLPG 66 PRILIV+DE L L+ L + +H G V R P L +LD+MLP Sbjct: 4 PRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFR---PHLAILDVMLPD 60 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 +G LC+++R S+IPI+ ++AK EE+D+LLGL IG DDYI KP+SP+EV RVK LR Sbjct: 61 GEGYQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLR 120 Query: 127 RCK-PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 R + + + P ++E + G+ L+LT E LL P ++ S+E L Sbjct: 121 RVSMMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETL 180 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 ++ + +D T+ HI+ LR K+E +E ++I+ V G+GYR Sbjct: 181 FTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYR 226 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 136/223 (60%), Gaps = 6/223 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LIVEDE ++ L+ DY + + S G++ L + DL +LD+M+P DGL + Sbjct: 5 VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR IR S+ PI+++TAK +E D+LLG E+GADDY+ KP+SP+ ++A+ K +LRR Sbjct: 65 CRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTLN 124 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 + D + L I++ + G+ L L+P E+ LL LS G SR+++L++++ Sbjct: 125 DKNILDF-NGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVW-G 182 Query: 193 YRVVTD-RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 Y D RT+D++IK LR KL LD + ++I V G GY++E Sbjct: 183 YDYFGDIRTVDTNIKRLREKL--LD-KANYIATVRGSGYKFEV 222 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 135/229 (58%), Gaps = 7/229 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIV+D+ KL +L+ DYL Y G + L ++ ++LD+M+P DG Sbjct: 12 QILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFE 71 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK-- 129 + +++R+ SDIP++M+TA EE DR++GLE+GADDY+ K +S RE++AR++ + RR + Sbjct: 72 MLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRLS 131 Query: 130 PQRELQQQDAESPLIIDEGRFQASWR-----GKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 R ++ Q ++ L E R GK L+LTP E+ LL TL+ P +V SR+Q Sbjct: 132 MDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRDQ 191 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 LL+ + V DR++D HI +LRRKL FI+ V VGY + Sbjct: 192 LLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFN 240 >UniRef50_A9KNR4 Two component transcriptional regulator, winged helix family n=4 Tax=Firmicutes RepID=A9KNR4_CLOPH Length = 227 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 137/223 (61%), Gaps = 8/223 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L +EDEP + +L +Y+R +Y +S G+ + + + D+ +LD+M+P +GL Sbjct: 2 KVLFLEDEPVIQDVLAEYMRMKNYDVVTVSDGEAAIATLSREDFDIAVLDIMVPKKNGLF 61 Query: 72 LCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + I+ R D+P +M+TA +E +L + ADDY+ KP SP ++ R++TILRR Sbjct: 62 VLEYIKERGIDLPCIMLTALEDEQTQLKAFNLYADDYVIKPVSPIILLKRMETILRRVSS 121 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + + E L+ E +QA ++G+ L+LT +EF LL+ L EP +VF+REQ++ H++ Sbjct: 122 YKTKPMNNKEFYLL--EDSYQAFFQGESLNLTLSEFLLLQMLWKEPNRVFTREQIILHIF 179 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ + DR ID+H+KNLR+KL IR V GVGY+++ Sbjct: 180 NEDYIGNDRIIDAHVKNLRKKLPFY-----CIRTVIGVGYQFD 217 >UniRef50_A3W0Y1 DNA-binding response regulator TorR n=2 Tax=Roseovarius RepID=A3W0Y1_9RHOB Length = 233 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 129/228 (56%), Gaps = 10/228 (4%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 I+I+EDEP L +YLR+ Y T ++ P + DL+L+D+ L G DGL + Sbjct: 7 IVIIEDEPVTRTTLAEYLRSHGYTVTAFDSAEKADPMLASDRADLLLVDITLDGKDGLQI 66 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 RE R SDI I++ T+ +++DR++GLE+GADDY+CKP++ RE++AR+K +LRR + QR Sbjct: 67 TREQRARSDIGIILTTSLSDDVDRIVGLELGADDYVCKPFNRRELLARIKNLLRRTEAQR 126 Query: 133 ELQQQDAESPLIIDEGRFQASWR------GKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 +Q+ F + R G+ + +T AEF +L L PG+V RE+L+ Sbjct: 127 RFSRQNVR----FHGYAFAFATRQLIAPDGEPIRITRAEFEVLAELLRHPGEVLGRERLM 182 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + + RT+D I+ LR KLE + FI +G GY + A Sbjct: 183 TVITHRQQHPDTRTVDVIIRRLRTKLEEDASAPRFITTAHGEGYVFTA 230 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 127/228 (55%), Gaps = 9/228 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+VED+ L +LL L Y G + L R P L++LD+MLPG DG Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LCR IR S +PI+M+TA+ E D++ GLE GADDY+ KP+ RE++AR+K +LRR + Q Sbjct: 91 LCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQTQ 150 Query: 132 RELQQQDAESPLIIDE-----GRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 Q + L I + R G LD +P EF L + +VFSREQLL Sbjct: 151 N--SQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLL 208 Query: 187 NHLYD-DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ DY T RT+D HI LR+K+E+ + + V G GY++E Sbjct: 209 EKVWGYDYPGWT-RTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFE 255 >UniRef50_A0L7S7 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S7_MAGSM Length = 250 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 133/226 (58%), Gaps = 7/226 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+ +D+P + +L+ DYL + L G + + QT D+++LDL+LP DGL Sbjct: 6 QILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPDEDGLQ 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LCRE+R S++PI+++++K E++DR++GLE+GADDY+ KP+ PRE++AR+K++LRR + Sbjct: 66 LCRELRARSNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLRRARSL 125 Query: 132 RELQQQDAE------SPLIIDE-GRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 E + E S +D R + G + LT E LL+ H P +V SR+Q Sbjct: 126 PETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALLRVFLHHPNRVLSRDQ 185 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 +L+ Y + RTID + LR++L + S I+ V GY Sbjct: 186 ILDLTYGKDQEPFGRTIDMQVSRLRKRLVDNAKDPSLIKTVRNAGY 231 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 146 bits (369), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 3/227 (1%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 N IL+V+D+ + LL D+L + S+ ++ +Q+ D ++LD+M+PG + Sbjct: 2 NAKTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGEN 61 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G CR IR SD+PI+ ++A+ ++D++ GL +G DDYI K SP E+VARVK +LRR Sbjct: 62 GFAFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRS 121 Query: 129 KPQRELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + E L ++ + + GK + LTP E+ LL+ P VFS +QLL+ Sbjct: 122 ASNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLD 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 L+D V T+ H+ LR K+E+ + +I V+G+GYR+E Sbjct: 182 KLWDG--VGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEG 226 >UniRef50_B9QSJ0 Response regulator receiver domain protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QSJ0_9RHOB Length = 247 Score = 146 bits (369), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 131/240 (54%), Gaps = 14/240 (5%) Query: 5 PIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML 64 P+ R IV+DEP++G+LLI+ ++ + S Q+L + PD ++DL L Sbjct: 11 PLPAGKTRAFIVDDEPEIGRLLIEAMQPFDMEGEVFSTAAQMLAALESDTPDACIVDLGL 70 Query: 65 PGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 P +G+ L EIRR S +PI++++A+ DR+LGLE+GADDY+ KP+ PREVVAR+++I Sbjct: 71 PDMEGMALINEIRRHSSVPIIVLSARAHATDRVLGLELGADDYVVKPFDPREVVARIRSI 130 Query: 125 LRRCKPQRELQQQDAESPLIID-----EGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 LRR + + E+ D S G+ L+ E LL+ L P +V Sbjct: 131 LRRSGGETVRAAKREETAHFADWSYKPSSHCLTSPEGEETFLSTGEATLLEALLRAPKRV 190 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY------RWE 233 +R+ LL H D + DR+ID I +R+KL D + IR +YG GY RW+ Sbjct: 191 LTRDYLLEHGGRDESL--DRSIDVRISRIRKKLNRKDG-PAHIRTIYGSGYMLTCDVRWD 247 >UniRef50_C1I3L5 Alkaline phosphatase synthesis transcriptional regulatory protein phoP n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I3L5_9CLOT Length = 227 Score = 146 bits (368), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 ++LIVED+ + +L L+A Y P + + ++ T PDLILLDL LP G Sbjct: 2 NTQVLIVEDDKSINDILFHTLKAEGYLPHSVFSLKEANDFLNTTLPDLILLDLNLPDGSG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 C++I IPI+++TAK + D++LGLE+GADDYI KP+ +EV +R+K + RR + Sbjct: 62 FDFCKDINAKYTIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFRRIE 121 Query: 130 PQRELQQQD---AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 ++ S + I+ +++ L P E+ LL+ KVFSREQL+ Sbjct: 122 KSASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSREQLI 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 +++++ RT+D HI+ +R KL++ + S I V+GVGY Sbjct: 182 DNIWEFSYDGDIRTVDIHIRRIRSKLDT-NGHPSVIETVFGVGY 224 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Ta... 368 e-100 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 341 1e-92 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 339 4e-92 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 339 7e-92 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 338 1e-91 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 337 2e-91 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 337 3e-91 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 336 3e-91 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 336 3e-91 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 336 4e-91 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 335 5e-91 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 335 1e-90 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_C4L340 Two component transcriptional regulator, winged ... 333 2e-90 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 333 2e-90 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 332 5e-90 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 332 9e-90 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 331 1e-89 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 330 2e-89 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 329 6e-89 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 328 9e-89 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 328 1e-88 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 328 1e-88 UniRef50_B8G179 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 327 2e-88 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 327 2e-88 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 326 3e-88 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 326 4e-88 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 325 6e-88 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 325 7e-88 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 325 1e-87 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 325 1e-87 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 324 1e-87 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 323 4e-87 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 323 4e-87 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_B8G223 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 322 6e-87 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 322 7e-87 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 322 7e-87 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 322 8e-87 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 322 9e-87 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 321 1e-86 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 321 1e-86 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 321 1e-86 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 320 2e-86 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 320 2e-86 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 318 1e-85 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 318 1e-85 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_D1C683 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 317 2e-85 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 317 3e-85 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 316 4e-85 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 316 5e-85 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 315 7e-85 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 315 1e-84 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 315 1e-84 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 314 1e-84 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 314 2e-84 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 314 2e-84 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 314 2e-84 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 314 2e-84 UniRef50_C4L703 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_D1C280 Two component transcriptional regulator, winged ... 313 4e-84 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 313 4e-84 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 312 4e-84 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_A4AL32 Putative two-component system response regulator... 312 5e-84 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 312 5e-84 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 312 6e-84 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 312 6e-84 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 312 7e-84 UniRef50_A4J267 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 312 7e-84 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 312 8e-84 UniRef50_C0WE14 Two-component system transcriptional regulator n... 312 8e-84 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 311 1e-83 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 311 1e-83 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 311 1e-83 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 311 1e-83 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 311 2e-83 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 311 2e-83 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 310 2e-83 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 310 2e-83 UniRef50_B8I272 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT 310 2e-83 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 310 2e-83 UniRef50_UPI000038414E COG0745: Response regulators consisting o... 310 3e-83 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 310 3e-83 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 310 3e-83 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 310 3e-83 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 310 4e-83 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 309 4e-83 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 309 4e-83 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 309 5e-83 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 309 5e-83 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 309 5e-83 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 309 5e-83 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 309 7e-83 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 309 8e-83 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 308 9e-83 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 308 1e-82 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 307 1e-82 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 307 2e-82 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 307 2e-82 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 307 2e-82 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 307 3e-82 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 307 3e-82 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 306 4e-82 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 306 5e-82 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 305 6e-82 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 305 1e-81 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 305 1e-81 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 303 3e-81 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 303 4e-81 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 303 4e-81 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 302 5e-81 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 302 5e-81 UniRef50_A6VZA5 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory pro... 302 7e-81 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 302 8e-81 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 302 8e-81 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 302 9e-81 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 301 1e-80 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 301 1e-80 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 301 1e-80 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 301 1e-80 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 301 1e-80 UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostrid... 301 1e-80 UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regu... 300 2e-80 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 300 2e-80 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 300 2e-80 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanob... 300 3e-80 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 300 3e-80 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 300 3e-80 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 300 4e-80 UniRef50_A6LQJ3 Two component transcriptional regulator, winged ... 300 4e-80 UniRef50_C6CSH8 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 299 4e-80 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bac... 299 5e-80 UniRef50_B2TMR2 Transcriptional regulatory protein ResD n=1 Tax=... 299 5e-80 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 299 6e-80 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 299 6e-80 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 299 7e-80 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 299 7e-80 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 299 8e-80 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 299 8e-80 UniRef50_A9AXY0 Two component transcriptional regulator, winged ... 299 8e-80 UniRef50_B3E8G4 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 298 1e-79 UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax... 298 1e-79 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_D2LY16 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_B5ZZQ5 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 297 2e-79 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 297 2e-79 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_C6PCT6 Two component transcriptional regulator, winged ... 297 3e-79 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 297 3e-79 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 297 3e-79 UniRef50_C7I0A5 Two component transcriptional regulator PhoB, wi... 296 3e-79 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 296 3e-79 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 296 4e-79 UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax... 296 4e-79 UniRef50_C7N3P1 Response regulator with CheY-like receiver domai... 296 4e-79 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_A3ERN0 Putative two component transcriptional regulator... 296 5e-79 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory pro... 296 5e-79 UniRef50_B9MF92 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 295 6e-79 UniRef50_B7IXR9 DNA-binding response regulator n=167 Tax=Bacilli... 295 7e-79 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 295 7e-79 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 294 1e-78 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 294 1e-78 UniRef50_Q3JG93 Response regulator protein n=61 Tax=Proteobacter... 294 1e-78 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 294 2e-78 UniRef50_A5UT44 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleid... 294 2e-78 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_C4IAX3 DNA-binding response regulator n=1 Tax=Clostridi... 294 2e-78 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 293 2e-78 UniRef50_C4RGF6 Two-component system response regulator receiver... 293 2e-78 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 293 3e-78 UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromo... 293 3e-78 UniRef50_C6PQ36 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_A4SZ97 Two component transcriptional regulator, winged ... 293 4e-78 UniRef50_B6BUZ2 Two component transcriptional regulator, winged ... 293 4e-78 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 293 4e-78 Sequences not found previously or not previously below threshold: UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 310 3e-83 UniRef50_B8I014 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 308 1e-82 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 305 7e-82 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 305 9e-82 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 303 3e-81 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 301 1e-80 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 301 1e-80 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 298 1e-79 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 297 2e-79 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 294 2e-78 UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostrid... 293 2e-78 UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus la... 293 4e-78 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 293 4e-78 >UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Tax=Bacteria RepID=BAER_ECOL6 Length = 240 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 240/240 (100%), Positives = 240/240 (100%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL Sbjct: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR Sbjct: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 Query: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF Sbjct: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV 240 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV Sbjct: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV 240 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 341 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 126/234 (53%), Gaps = 5/234 (2%) Query: 3 ELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDL 62 L + E+ +IL+VED+ L +LL L Y G + L R P L++LD+ Sbjct: 24 TLAMPEH--KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDV 81 Query: 63 MLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVK 122 MLPG DG LCR IR S +PI+M+TA+ E D++ GLE GADDY+ KP+ RE++AR+K Sbjct: 82 MLPGIDGFELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMK 141 Query: 123 TILRRCKPQRELQQQ---DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 +LRR + Q + L I R G LD +P EF L + +V Sbjct: 142 ALLRRSQTQNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRV 201 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 FSREQLL ++ RT+D HI LR+K+E+ + + V G GY++E Sbjct: 202 FSREQLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFE 255 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 339 bits (872), Expect = 4e-92, Method: Composition-based stats. Identities = 101/235 (42%), Positives = 141/235 (60%), Gaps = 1/235 (0%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + T RIL+VEDE + + YL +Y T + G L + DL++LDLMLP Sbjct: 4 TNSETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLP 63 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G +CR IR SD+PI+M+TAK E DR++GLE+GADDY+ KP+SPRE+VARV+ +L Sbjct: 64 RVPGERVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALL 123 Query: 126 RRCKPQRELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 RR E Q++ E L ID + GK +DLT +EF+LL TLS PG+V+SR + Sbjct: 124 RRVHADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRME 183 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRI 239 L+ + +RTIDSH+KNLR K+ ++ V+GVGYR+E + Sbjct: 184 LVEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTKQP 238 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 339 bits (870), Expect = 7e-92, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 138/229 (60%), Gaps = 4/229 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + E + +IL+V+DE ++ LL+ L+ +Y T S+G + L +++ L+LLD+M+P Sbjct: 1 MPEQSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DGLT C IR FS++PI+M+TA+ +E+DR+ GL+IGADDYI KP+SPRE++AR++ L Sbjct: 61 EMDGLTACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATL 120 Query: 126 RRCKP-QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 RR + L +D GK + LT EF LL KVFSREQ Sbjct: 121 RRSHRFTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQ 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 LL+ ++ + RT+D+HIK LR KL I+ V+G+GY++E Sbjct: 181 LLDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKFE 226 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 135/223 (60%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +IL+VED+ + L L Y + G + L + PDL+LLD+MLP DG Sbjct: 2 KKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C+EIR+ S++PI+M+TAK EE+D++LGL++GADDYI KP+ +E++AR++ +LRR + Sbjct: 62 EVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Q+ P +D + +GK ++L+ EF +LK L PG+V++R+ ++ H++ Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + R +D +I+ LR K+E + +I V +GY+++ Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQ 224 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 337 bits (865), Expect = 2e-91, Method: Composition-based stats. Identities = 89/236 (37%), Positives = 144/236 (61%), Gaps = 11/236 (4%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +ILIV+D+ + +L+ YL + ++ G++ + R+ P+LILLDLMLPG Sbjct: 2 ATKQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGI 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG +CRE+R+ S IPI+M++AK E D++LGLE+GADDY+ KP+ +E+VARVK +LRR Sbjct: 62 DGYEVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRR 121 Query: 128 CKPQRELQQQ---------DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGK 178 P + +Q + LII++ + ++ G +++ P E L L+ P + Sbjct: 122 VVPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQ 181 Query: 179 VFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 VF+REQLL+H++ + RT+D HIK LR K++ + + V+G+GY++E Sbjct: 182 VFTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKFEV 235 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 93/228 (40%), Positives = 140/228 (61%), Gaps = 1/228 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIV+DEPK+ ++ YL Y +G + L + PDLI+LD M+P G+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 + REIR+ S IPI+M+TAK EE+D+L+G E G DDY+ KP+S RE+ AR+KTIL+R + + Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEAK 123 Query: 132 R-ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + E L + + + +GK LDLTP EF+LL+ PGK +SR +LL + Sbjct: 124 TINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYAI 183 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 + +RTID+HI NLR+K+E A +I+ V+G+GY+ + + Sbjct: 184 GEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRGEK 231 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 113/221 (51%), Positives = 153/221 (69%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIVEDEPK+ + L YL A + + GD+ +VRQ PDL+LLD+MLPG DG+ + Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C+E+R FS IPI+M+TA++EEIDRLLGLE+GADDYICKP+SPREVVARVK +LRR + Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNTPQ 126 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 E ++ E P+I+DE + S G L LTP+EF +LK + P +VFSR +LL+ Sbjct: 127 EESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLAIGS 186 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 DRTIDSHI+NLR+K++ + I ++YG GY++ Sbjct: 187 QFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFN 227 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 142/227 (62%), Gaps = 2/227 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P IL+V+DEP L + L L + T S G + L R DLI+LDLMLPG DGL Sbjct: 2 PHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGL 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 T+CRE+R PI+M+TAK ++ID++LGLE+GADDYI KP++ RE++AR++ +LRR + Sbjct: 62 TICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121 Query: 131 QRELQQ--QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + + L++ + +A G+ L+LT E+ LL+ L+ PG V++R++LL+ Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ +RT+D H++ +R KLE + ++R +GVGY EA+ Sbjct: 182 VWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 336 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 146/227 (64%), Gaps = 3/227 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L+V+D+ K+ ++L YL Y+ G + + RQ PD++LLD+MLP DG Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+EIRR SD+PI+M+TA+ +E DR++GLE+GADDY+ KP+SP+EV+AR++ I RR +P Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121 Query: 132 RE---LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 ++ ++D+ + G ++LTP E++LL+ PG+VFSR QL+ Sbjct: 122 SRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIEK 181 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + D +RT+DSHIKNLR+KL + E +I+ +YGVGY+ + Sbjct: 182 VQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGE 228 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 335 bits (862), Expect = 5e-91, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 137/228 (60%), Gaps = 1/228 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 RIL V+D+PK+ ++L L + S G++ L RQ+ PDL++LDLM+PG DG Sbjct: 2 PQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR-C 128 ++++ ++PI++++A+ EE+DR++G +G DDY KP+SP E+ RVK +LRR Sbjct: 62 FETYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLG 121 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 +P+ L+ L +D + + ++LTP +F LL ++ P +VF++ LL+ Sbjct: 122 EPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDK 181 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 ++D D T+ HI+ LR K+E+ + +I+ V+G+GY++E + Sbjct: 182 IWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFEYEG 229 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 95/230 (41%), Positives = 138/230 (60%), Gaps = 12/230 (5%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+DE + +LL L+ + Y + + G L + DL+LLD+MLP DGL + Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLEV 60 Query: 73 CREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC- 128 CR+++ + S IPI+M+TAK EEIDR+LGLE+GADDY+ KP+S RE++ARVK +LRR Sbjct: 61 CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRSA 120 Query: 129 ------KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + +E ++ L +D +QA K + LTP E+ LLK L PG+ FSR Sbjct: 121 SVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFSR 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++LL ++ RT+D HI++LR KL+ I V GVGYR+ Sbjct: 181 DELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 134/229 (58%), Gaps = 5/229 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+LI +DE ++ LL YL Y G++ L +L++LDLM+P DG+ Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGIE 64 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR---- 127 +CR +R ++IPI+M+TAK +E+D+++GL IGADDYI KP+S EV+AR+K ++RR Sbjct: 65 VCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLVL 124 Query: 128 -CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + L ID ++ + K + LT E LLK + P +VF++ QL Sbjct: 125 GSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQLF 184 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +++D + D T+ HI+ LR+K+E+ + FI+ V+G+GY++ + Sbjct: 185 RNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGE 233 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 134/237 (56%), Gaps = 7/237 (2%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 + +IL+V+D+P + +L+ L Y ++ L V D+ ++D+MLPG Sbjct: 24 NMAKKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPG 83 Query: 67 TDGLTLCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKT 123 DG L R++R ++ + P+V ++AK EE D++LGLE+GADDYI KP+S RE++AR+K Sbjct: 84 MDGFELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKA 143 Query: 124 ILRR----CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 + RR + + E ++ L ID R++ + + LTP EF LL+ L+ GKV Sbjct: 144 VFRRIQLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKV 203 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 FSR+ LL+ L+ RT+D HI+ LR K+E + +I V G GY++ Sbjct: 204 FSRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPG 260 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 333 bits (856), Expect = 2e-90, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 141/232 (60%), Gaps = 4/232 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + E+ RIL+ +DE ++ LL+ L Y S+G + + +++ L+LLD+M+P Sbjct: 1 MSESMFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DGLT C IR FS++PI+++TA+ EE+DR+ GL+IGADDYI KP+SPRE++AR++ L Sbjct: 61 ELDGLTACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATL 120 Query: 126 RRCKP-QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 RR +E + L ID S +GK ++LT EF LL KVFSREQ Sbjct: 121 RRTHSFSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQ 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 LL+ ++ RT+D+HIK LR KL +I+ V+G+GY++EA+ Sbjct: 181 LLDQIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 333 bits (856), Expect = 2e-90, Method: Composition-based stats. Identities = 89/233 (38%), Positives = 127/233 (54%), Gaps = 5/233 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +ILIVEDE + ++ YL Y +G + PDLI+LDLM+P DG Sbjct: 2 KKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGW 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR--- 127 LC EIR+ S++PI+M+TAK EE DR+LGL +GADDY+ KP+SPRE+V RV+ ILRR Sbjct: 62 ELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 128 --CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + + L + L I ++LT EF +L ++ P +VFSR QL Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 L ++D T+ + LR KLE + +I V+G+GYR+E + Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNGRN 234 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 332 bits (853), Expect = 5e-90, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 135/225 (60%), Gaps = 3/225 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LIV+D+ L ++ L ++ + G YV + + ++LD+MLP DG + Sbjct: 6 VLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEV 65 Query: 73 CREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 C +IR S +PI+M+TAK+EE D+++GL++GADDY+ KP+SPRE+VARV+ ++RR + Sbjct: 66 CHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQ 125 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 ++ + + L +D ++ + +DL P EF LL L P +VF+RE++L + Sbjct: 126 DFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKI 185 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + RT+D H+K +R+KLE S I+ V+GVGY++E Sbjct: 186 WGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEV 230 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 332 bits (852), Expect = 9e-90, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 138/225 (61%), Gaps = 3/225 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +LIV+DE + L+ YL A+++ +G++ L ++ D+IL+D+M+P DG Sbjct: 3 KKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDG 62 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 TLC IR SD+PI+ +TA+ +E D++ GL++G DDYI KP+SP E++AR++ I+RR Sbjct: 63 FTLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAY 122 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 ++ + + PL+IDE + + G + LT EF LL L+ G+VFSRE LL + Sbjct: 123 HNKQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQV 182 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + RT+D+HIK LR KL+ FI+ V+G+GY++E Sbjct: 183 WGYDYTGNARTVDTHIKTLRMKLKQAS---DFIQTVWGIGYKFEV 224 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 135/237 (56%), Gaps = 7/237 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N +IL+V+DE ++ +LL YL +YA +GD+ + + DLILLDLM+PGT Sbjct: 4 TNETKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGT 63 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+ +CR+IR PI+M+TAK EE +R+ G E G DDYI KP+SPREVV RVK +LRR Sbjct: 64 DGIEVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123 Query: 128 C------KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 + S L ID + + G + LTP E+ LL L+ P KV+ Sbjct: 124 ASQTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYD 183 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESL-DAEQSFIRAVYGVGYRWEADAC 237 RE+LL ++ RT+D+H+K LR KL + I V+GVGY++E A Sbjct: 184 REKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 136/234 (58%), Gaps = 1/234 (0%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + E ++L+VEDE + + + L A Y G+ L + + PDL++LDLMLP Sbjct: 1 MREKKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLP 60 Query: 66 GTDGLTLCREIRRFSDIP-IVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 G DGL +C+ IR P I+++TAK ++ D+++GLE+GADDY+ KP++P E++AR+K + Sbjct: 61 GIDGLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAM 120 Query: 125 LRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 LRR + L +D + + ++LTP E+ LLK PGK RE+ Sbjct: 121 LRRRDRYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREE 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 +LN ++ + +T+D HI+ LR K+E ++ +I+ ++G GYRW+ + R Sbjct: 181 MLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPEMVR 234 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 330 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 88/236 (37%), Positives = 129/236 (54%), Gaps = 11/236 (4%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+V+DEP + LL L+ A Y + G L ILLDLMLP DG+ Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 72 LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + +++R+ PI++VTAK +E D++ GLE+GADDYI KP+SPREV+AR+K ++RR P Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 131 QRELQQQDAE----------SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 + L ID+ +++ + GK + LTP EF LL G+V Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 SR+ +LNH++ R +D HI +LR K+E+ + IR V G GY + D Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGDG 240 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 329 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 89/233 (38%), Positives = 135/233 (57%), Gaps = 5/233 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +ILIV+DEP++ +L+ ++L+ A Y G L + DL++LD+M+P Sbjct: 70 PQMAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFM 129 Query: 68 DGLTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DG+T RE+R + P++++TA+ EE D+L GLE GADDY+ KP+SPRE+VARVK +L Sbjct: 130 DGMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLN 189 Query: 127 RCKPQRELQQQD-AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 R P+ E L ID G+ + LTP EF LL L+ G SRE++ Sbjct: 190 RTMPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKI 249 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 L +++ DRT+D+H+K LR L + +I V+G+GY+++ DA R Sbjct: 250 LQKVWNYDYFGEDRTVDTHVKMLR---GHLGKCRGYIATVWGIGYKFDPDAAR 299 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 328 bits (843), Expect = 9e-89, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 129/231 (55%), Gaps = 5/231 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N I++V+DE ++ L+ YL Y +G + L + + DLI+LD+M+P Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+ C +IR ++PI+M++AK E++D++ GL GADDY+ KP++P E++ARVK+ LRR Sbjct: 61 DGIEACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRR 120 Query: 128 CKPQREL-----QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 K L I+ + K + LTP EF +L+ L+ G VFS Sbjct: 121 YKKFNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSI 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 E++ ++ + +D T+ HI+ LR K+E + +++ V+GVGY+ E Sbjct: 181 EKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVE 231 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 134/226 (59%), Gaps = 3/226 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L+V+D+ + +L+ Y + + GD VL + PD+++LD+MLPG DGL+ Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LCR +R IPI+M+TAK EE DR+LGLE+GADDY+ KP+SPRE+VAR+K +LRR + Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 132 RELQQ-QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Q L I + ++TP EF LL L+ P +VF+RE+LL ++ Sbjct: 126 DPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVW 185 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 RT+D HI+ LR KL SL +++ V+GVGY++ Sbjct: 186 GYDYFGDQRTVDVHIRRLRTKLASLP--HEYLQTVWGVGYKFTPPV 229 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++++V+DE + +L L+ Y G+ + + + PD++LLD+MLPG DG+ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR---- 127 +CRE+R+ ++PI+M+TAK EID++LGLE+GADDY+ KP+S RE++ARVK LRR Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123 Query: 128 -CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + + ++I + RG+ ++LT EF L LS G+V +RE LL Sbjct: 124 PAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 ++ RT+D I+ LR K+E + +I GVGY Sbjct: 184 QTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 327 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 132/232 (56%), Gaps = 7/232 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+VED+ + +L+ L Y + G++ L + + PDL+LLD+MLP DGL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 +C++IR ++IP++M++A+ E DR++GLE+GADDYI KP+SPRE++AR+K LR Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 129 KPQRELQQ-QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + L I + + +G+ + LT EF LL P +VFSRE LL Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRI 239 ++ RT+D HI NLR KL+S+ I +V GVGYR + R Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVSP---IIESVRGVGYRLAVNYSRP 231 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 133/226 (58%), Gaps = 3/226 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+L+V+DE + + L L G++ L YVR D+ILLD+MLP DGL+ Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP- 130 +C++IR FS++PI+M+TAK +++D++LGL+ GADDYI KP++ EV AR+K ILRR Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSI 132 Query: 131 --QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + + + ID K ++LT EF LL+ L+ PGKV+SR+ LL Sbjct: 133 TQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLKA 192 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ RT+D H++ LR K+E+ +E ++ +GVGY + Sbjct: 193 VWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 131/228 (57%), Gaps = 6/228 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL++ED + + + + + G + + DLI+LD+MLP DG+T Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR+IR S +PI+M+TAK E D+++G E+GADDY+ KP+SP +VAR+K ++RR K Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 132 REL---QQQDAESPLIIDEGRFQASWRGKMLD-LTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + I++ + G+ ++ LTP EF LL L P +VFSREQLL Sbjct: 122 GKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLLE 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ +RT+D HIK LR+KL S D + V+GVGY+++ D Sbjct: 182 QVWGYQFYGDERTVDVHIKRLRKKLASEDKPFLY--TVWGVGYKFDED 227 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 142/234 (60%), Gaps = 7/234 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +T ++L+ +D+P + +++ Y + G + L + + PD+++LD+M+P Sbjct: 30 MSTMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQL 89 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG CREIR+ D PI+M+TAK EE DR+LGLE+GADDY+ KP+SPRE+VAR++ I+RR Sbjct: 90 DGFEACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149 Query: 128 CKPQRELQQQDA-----ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 +P+ +++ + A L ID + + G+ + P EF LL L PG V+SR Sbjct: 150 LQPKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSR 209 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 EQLL ++ RTID HIK +R++L+ L I+ V+G+GY++ D+ Sbjct: 210 EQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLP--YDCIQTVWGIGYKFGVDS 261 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 87/220 (39%), Positives = 132/220 (60%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+DEP L +L YL + G + L R PDL++LDLM+P G Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 R + S P++++TAKIE+ D++LGLE+GADDY+ KP++ RE++AR++ +LRR + Sbjct: 64 LRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQTP 123 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 + +++D G+ +DLTP+EF +L TL PG+VFSR LL+ + D Sbjct: 124 LEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVSGD 183 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++RTID HI+NLR K+E+ +I VYG+GYR+ Sbjct: 184 AFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRF 223 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 325 bits (836), Expect = 6e-88, Method: Composition-based stats. Identities = 92/256 (35%), Positives = 136/256 (53%), Gaps = 24/256 (9%) Query: 1 MTELPIDEN-------------TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVL 47 MT P+DE+ RIL+VEDE + ++ L+ + + + G L Sbjct: 1 MTSNPLDESMESLTVVPPAASPASRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTAL 60 Query: 48 PYVRQ---------TPPDLILLDLMLPGTDGLTLCREIRRFS-DIPIVMVTAKIEEIDRL 97 Y R PDL++LDLMLP +GL CR +RR +PI+M++AK E DR+ Sbjct: 61 NYFRSDSPEAGSVTENPDLVVLDLMLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRV 120 Query: 98 LGLEIGADDYICKPYSPREVVARVKTILRRCKPQR-ELQQQDAESPLIIDEGRFQASWRG 156 +GLEIGADDY+ KP+ RE+VAR + +LRR + Q E L + + Sbjct: 121 VGLEIGADDYLTKPFGTRELVARCRALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDD 180 Query: 157 KMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLD 216 + L L+P EFRLL+ P +V+SR+QLL ++ + +TID HI+ LR K+E+ Sbjct: 181 RELTLSPKEFRLLELFMRHPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANP 240 Query: 217 AEQSFIRAVYGVGYRW 232 + S++ V G GYR Sbjct: 241 SNPSYLLTVRGFGYRL 256 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 94/241 (39%), Positives = 138/241 (57%), Gaps = 19/241 (7%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 RIL+VEDE + +L+ L Y ++HGD+ + DLI+LDLMLPG DGL Sbjct: 2 HRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGL 61 Query: 71 TLCREIRRFS--DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR-R 127 +CR+IR S IP++M+TAK +EI++++GLE+GADDY+ KP+SPRE++ARVK LR R Sbjct: 62 EVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGR 121 Query: 128 CKPQRELQQQD----------------AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKT 171 K + + QD PL I +++A + L LTP EF LL Sbjct: 122 TKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNI 181 Query: 172 LSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 + G+V +RE+LL ++ + RT+D HI++LR+K+ + V G+GYR Sbjct: 182 MVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYR 241 Query: 232 W 232 Sbjct: 242 L 242 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 95/223 (42%), Positives = 146/223 (65%), Gaps = 1/223 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+VEDE K+ +L +LR + L + G + L + PDLI+LDLMLPG G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 ++IR+ ++ PI+++TA+++E+D+LLGLE+GADDYI KP+SPRE+ R+K +LRR +P Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 ++ + S L I+ R +A +L LTP EF++L L+ PG+VFSR +L ++ D Sbjct: 125 QVTNV-SISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFGD 183 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +RTID+HI NLR K+E+ + I+ VYG+GY+ A+ Sbjct: 184 IYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 6/230 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + IL+V+DE + L+ YL+ + +G V +L +LD+MLP DG Sbjct: 2 SMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 TLC+ IR + P++M+TAK EEID++ GL +GADDYI KP+ P E+VARVK LRR Sbjct: 62 FTLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121 Query: 130 PQRELQQQ-----DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 ++ A S LI+D + + K + LTP EF +L L G+V S E+ Sbjct: 122 KYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 181 Query: 185 LLNHLYDDYRVVTD-RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 L + ++ D T+ HI++LR K+ +I+ V+GVGY+ E Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 131/232 (56%), Gaps = 7/232 (3%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E T R+L+V+DE + +LL +L + +++ G L + P D I+LD+MLP Sbjct: 7 EMTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQL 66 Query: 68 DGLTLCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DG+ +C+ +R + S PI+MV+AK +E D++L LE+GADDY+ KP+SPRE++ARVK ILR Sbjct: 67 DGIEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILR 126 Query: 127 RCKPQRELQQQDAESP------LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 R + + ++ P L + R + ++L LTP E+ LL L P Sbjct: 127 RTEAEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTL 186 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +RE+LL ++ R +D HI LR K+E +I+ + G GY++ Sbjct: 187 TRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 130/231 (56%), Gaps = 3/231 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 R+L+V+D+ + +++ YLR A + + G L TPPDL++LDLMLPG DG+ Sbjct: 56 ARVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGI 115 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + R +R +P++M+TA+ +E DR+ GLEIGADDY+ KP+SPRE+ RV+++LRR Sbjct: 116 EVFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 131 QRELQQQ--DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + L++D A+ G L LT EF LL L PG+ F+R +LL H Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRI 239 ++ T+ HI+ LR K+E + V+GVGYR++ R Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDPGTPRP 285 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 141/230 (61%), Gaps = 8/230 (3%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP-DLILLDLMLPGTDG 69 R+LIVED+P + ++ L + G+ L + + P DL+LLD+MLPG DG Sbjct: 2 ARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDG 61 Query: 70 LTLCREIRR----FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 +++CRE+R +P+VM+TA+ +E ++GLE+GADDYI KP+SPR++ +RV+ L Sbjct: 62 ISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQL 121 Query: 126 RRCKPQREL---QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 RR + + Q++ L ID R + + RG+ ++LT EF +L L+ PG+V+SR Sbjct: 122 RRQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSR 181 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 EQ+++HL+ R+ D HI++LR+K+E +I+ V G+GYR+ Sbjct: 182 EQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 95/228 (41%), Positives = 136/228 (59%), Gaps = 4/228 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 P+IL+V+DE K+ ++L +L ++ + S G + L V + PDLI+LDLMLP G Sbjct: 2 NPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C++IR+ PI+M+TAK E D++ G GADDY+ KP+S RE++AR+K ILRR Sbjct: 62 EEVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSN 121 Query: 130 PQRELQQQDA--ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + E + + L I R + G+ DLT EF +L TL PG+VF+REQL Sbjct: 122 QKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAK 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + DRTID+HIKN+R+KL + I VYGVGY++E D Sbjct: 182 KVMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKFEGD 227 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 88/228 (38%), Positives = 131/228 (57%), Gaps = 6/228 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 RIL++ED + L+ L Y T S G + L DLI+LD+MLP DGL Sbjct: 3 KRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGL 62 Query: 71 TLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C+ +R + PI+M+TAK E DR++GLE GADDY+ KP+S RE+ ARVK LRR Sbjct: 63 QVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTD 122 Query: 130 PQRELQQQDAE-----SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 ++ A+ L ID+ + + + K + LT EF LL ++ PG+VFSRE+ Sbjct: 123 MSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREK 182 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 LL+ ++ + T++SHI LR KLE+ + ++ V+GVGY++ Sbjct: 183 LLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 136/232 (58%), Gaps = 6/232 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + T ++L+V+DE + +++ L+ +Y +G+ L ++ PDL++LD+MLP Sbjct: 2 KRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLI 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG +CR IR S +PI+M++AK E ID+ +G +GADDY+ KP+SP E+ RVK +LRR Sbjct: 62 DGYEVCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRR 121 Query: 128 ------CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 + + ++ L I+ + RGK + LTP EF LL ++ P +VF+ Sbjct: 122 SFDKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFT 181 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 REQL H++ D V TI I+ LR K+E A+ +I+ V+G+GY++ Sbjct: 182 REQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKFS 233 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 91/231 (39%), Positives = 131/231 (56%), Gaps = 7/231 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIV+DE ++ +LL YL S+ S+G + + ILLDLMLP DG+ + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC---- 128 ++R PI+M+TAK EE +R+ G E GADDYI KP+SPREVV RVK +LRR Sbjct: 65 ATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTT 124 Query: 129 --KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + + L ID + + ++LTP E+ LL L+ P KVF REQLL Sbjct: 125 VEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQLL 184 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSF-IRAVYGVGYRWEADA 236 ++ RT+D+H+K LR KL + +E + I+ V+GVGY++E + Sbjct: 185 KEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKS 235 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 322 bits (827), Expect = 7e-87, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 138/229 (60%), Gaps = 4/229 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 ++ N R+LI+EDE + ++ YL+ Y + +G + + +Q D ++LDLMLP Sbjct: 1 MEANKKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G +C+ IR S +PI+M+TAK+EE DR+ GL+IGADDY+ KP+SP+E+VARV+ I+ Sbjct: 61 DLSGEEICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIM 120 Query: 126 RRCKPQ--RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 RR + + + L +D + + ++++LT EF+LL GKVFSR+ Sbjct: 121 RRTNNEGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRD 180 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +L+ + V DRTID HIKNLR K+E +I VYGVGYR+ Sbjct: 181 ELVVKVLGYDYVGYDRTIDVHIKNLRHKIE--CEYYKYIVTVYGVGYRF 227 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 322 bits (827), Expect = 7e-87, Method: Composition-based stats. Identities = 96/231 (41%), Positives = 144/231 (62%), Gaps = 8/231 (3%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P ILIVED+ ++ QL+ + L + + + G+ L ++ PDLI+LDLMLP DGL Sbjct: 12 PNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGL 71 Query: 71 TLCREIRRF---SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 +C IR+ D I+M+TAK EEIDR++GL GADDY+ KP+SPRE+VARV+ +LRR Sbjct: 72 EVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRR 131 Query: 128 C-KPQRELQQQDAESPLIIDEGRFQASW----RGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + + + Q + +D + QAS R + L+LT EF LL T PG+V++R Sbjct: 132 QLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNR 191 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 QL+ L+ + +R +D+HI+ LR+K+E A +FI+ V G+GY++E Sbjct: 192 TQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 92/230 (40%), Positives = 138/230 (60%), Gaps = 3/230 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + T IL++ED+ ++ ++L +YL Y + G+ L P L+L+DLMLP Sbjct: 9 MKRMTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLP 68 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DG +CR++R+ S++PI++V+A+ +ID++ L +GADDYI KP+SP E+VARVK+ L Sbjct: 69 KVDGFEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHL 128 Query: 126 RRCKPQRELQQQD---AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 RR L++Q+ + L I+ R GK L LT EF LL TL+ PG+VFS+ Sbjct: 129 RRYHRYNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSK 188 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 EQL N ++ RT+ HIKN+RRKL FI V+G+GY++ Sbjct: 189 EQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKF 238 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 322 bits (826), Expect = 9e-87, Method: Composition-based stats. Identities = 92/232 (39%), Positives = 132/232 (56%), Gaps = 3/232 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + N + L+VED+ + +L+ LRA +A + G + L P +LI+LDLMLP Sbjct: 1 MATNARQALVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLP 60 Query: 66 GTDGLTLCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVK 122 DG +CR +R PI+M+TAK EE D++LGL++GADDY+ KP+ PRE +ARV Sbjct: 61 TLDGWEICRRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVH 120 Query: 123 TILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 +LRR + L I +QA K +DLTP EF LL L+ G+ R Sbjct: 121 ALLRRTTDYNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKR 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 EQLL ++ + RTID HIK LR+K+ L+ +F++ V+GVGY+ E Sbjct: 181 EQLLEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEV 232 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 128/238 (53%), Gaps = 11/238 (4%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 ++L+V+DEP + LL L+ AS+ ++G L + D++LLDLMLP G Sbjct: 2 KKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGE 61 Query: 71 TLCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 + + IR +D P++++TAK E D++ GLE+GADDY+ KP+SPREV+AR+ +LRR + Sbjct: 62 EVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYE 121 Query: 130 PQRELQQQDA----------ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 QQ+A P ID +++ S + L LTP EF L++ L +V Sbjct: 122 KSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQV 181 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 SR+QLL ++ R +D I +LR K+E +++ + G GY + Sbjct: 182 LSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGGD 239 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 136/228 (59%), Gaps = 3/228 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+V+DEP + L+ L+ A Y +S G+ V ++ PDLI+LDLMLP DG Sbjct: 2 KKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDG 61 Query: 70 LTLCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + +CRE+R+ S+ +PIVM+TA + D++ GL+ GADDY+ KP+SP+E+++R++ I RR Sbjct: 62 IQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRI 121 Query: 129 K--PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + P + L + + + G+ ++LTP EF LL L GKV SR+QLL Sbjct: 122 QTLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLL 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + ++D + + R +D HI +LR K+E +I V VGY+ A Sbjct: 182 HGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHA 229 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 5/227 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILI +DE ++ L+ +L Y + G++ + + P DL++LD+M+P DG + Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGYEV 65 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR----- 127 R+IR +PI+ ++AK + D++ GL +GADDY+ KP++P E+VARV LRR Sbjct: 66 TRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLTLN 125 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 E + ++ID R G+ ++LTP EF +L L+ P KV++ E + Sbjct: 126 QPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENIFQ 185 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ D T+ HI+ LR+KL + I+ V+GVGY + Sbjct: 186 QVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFNG 232 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 94/228 (41%), Positives = 144/228 (63%), Gaps = 6/228 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 RIL+VED+ + LL +L A +A ++ GD L DLI+LD+MLPGTDG Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 71 TLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +CR +R+ PI+MVTAK EE+D++LGLE+GADDYI KP+S REV+ARVK + RR + Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 130 PQRELQQQDAESPL-----IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 +E Q Q ++P+ +++ + + + G+ +DLT EF LL + PG+ FSR++ Sbjct: 127 VDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDE 186 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 LL+ ++ T+++HI LR K+E +E +++ V+GVGYR+ Sbjct: 187 LLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 3/225 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LIVEDE L L LR + T++ G L ++ D++LLDLMLPG G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C+++R S +P++MVTA+ EID+++GLE+GADDY+ KPYS RE++AR++ +LRR Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 123 Query: 133 ELQQQ---DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + P+ +D R S G+ + L EF LL+ L G+V +R QL++ + Sbjct: 124 DAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 183 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + V +T+D H+K LR K+E A + V G+GY+ E Sbjct: 184 WGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 124/238 (52%), Gaps = 9/238 (3%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + ILI ED+P + +L+ +L Y + G + + V+ DL++LD+M+P Sbjct: 1 MGMQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMP 60 Query: 66 GTDGLTLCREIRR-FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 DG + R IR +PI+ ++AK + D++ GL +GADDY+ KP++P E++ARV Sbjct: 61 HMDGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQ 120 Query: 125 LRRCKPQREL-------QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 LRR + + L ID+ + + +DLTP EF +L L+ P Sbjct: 121 LRRFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPK 180 Query: 178 KVFSREQLLNHLYDD-YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 KVFS E + ++ + Y T+ HI+ LR+KL Q +I+ V+GVGY ++ Sbjct: 181 KVFSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQG 238 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 130/229 (56%), Gaps = 5/229 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +ILIV+DE ++ L+ YL+ + ++ ++ + DL LLD+M+P G Sbjct: 70 KEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISG 129 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L LC++IR + PI+M+TAK EID++ GL +GADDYI KP+ P EVVARVK LRR K Sbjct: 130 LELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYK 189 Query: 130 PQR----ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + ++ LI+++ + ++L LTP EF +L L + G V S E+L Sbjct: 190 RYNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAEEL 249 Query: 186 LNHLYDDYRVV-TDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ D ++ TI HI++LR K+E +I+ V+G GY+ E Sbjct: 250 FHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIE 298 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 92/222 (41%), Positives = 134/222 (60%), Gaps = 1/222 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P IL+V+DE + + YL A Y + G + L PDLI+LDLMLPG DG+ Sbjct: 3 PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGM 62 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + +R SD+ I+M+TA+ +EIDR+ GL +GADDY+ KP+SPRE+VARV+ ILRR + Sbjct: 63 EITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + + + ID +A G++L+LTP EF LL L+ +V SRE L+ ++ Sbjct: 123 KPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVW 182 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 TDR +D ++ +RRK+E+L E + IR GVGYR+ Sbjct: 183 GADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRF 223 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 128/231 (55%), Gaps = 7/231 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 ILIV+DE ++ L+ YL+ + G + L + D+ +LD+MLP DG Sbjct: 2 NENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C++IR PI+M+TAKIE+ID+++GL IGADDYI KP++P EVVARVKT LRR Sbjct: 62 FHICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYM 121 Query: 130 PQRELQQQDA-------ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 +Q + LII++ + S GK + LTP EF +L L GKV Sbjct: 122 RYNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPS 181 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 E+L ++ + + + T+ +HI LR K+ FI+ V+GVGY E Sbjct: 182 EELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIE 232 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 1/226 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+ +D+PK ++L L A +A S G + L PDL++LD+M+P DG Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C IR S +PI+++TA+ + +D+++G +GADDY+ KP+ E+V RV ILRR P Sbjct: 66 VCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM-PT 124 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + L I++ + +LTP EF LL ++ PG F+RE LL ++ Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWH 184 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 T+ I+ LR K+E A+ +I+ V+G+GY+++ Sbjct: 185 GDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAGA 230 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 126/228 (55%), Gaps = 3/228 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N +IL+V+DE + ++ YL + G L LI+LDLMLP Sbjct: 2 NNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKM 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 G +C IR S +PI+M+TAK EE +++ G+ +GADDY+ KP+S RE+V RV+ +LRR Sbjct: 62 TGEEVCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRR 121 Query: 128 CKPQRELQQQDAE---SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 L +D + +G +++LT EF++L P +VFSRE+ Sbjct: 122 AYRDFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREK 181 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L+ + DRT+DS+IKN+R+K+ES E ++I VYG+GY++ Sbjct: 182 LVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKF 229 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 86/241 (35%), Positives = 134/241 (55%), Gaps = 15/241 (6%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 I++ +DE + + YL + + +G++ + ++ PDL++LDLM+P DGL Sbjct: 3 ANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGL 62 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C IR+ D PI+M+TA+ EE DRLLGL +GADDY+ KP+SPRE+V RV ILRR Sbjct: 63 EVCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGW 122 Query: 131 QRELQQQDAES---------------PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHE 175 + E + ++ L I + S ++LT EF LL L+ Sbjct: 123 RSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMY 182 Query: 176 PGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 PGKVFSR QLLN ++D T+ H++ LR K+E ++ ++I+ V+G+GY+ + Sbjct: 183 PGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKLDNK 242 Query: 236 A 236 Sbjct: 243 G 243 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 317 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 127/231 (54%), Gaps = 3/231 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E +LIV+DE + L+ D+L A YA G L + P D +LLD+M+PG Sbjct: 2 ERPTTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGP 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 G + R IR D+P++ +TA+ E+ D++ GL +GADD+I K +P EVVAR+K +LRR Sbjct: 62 SGYDVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRR 121 Query: 128 CKPQRELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + + L+ID + GK + LT EF LL+ + P +VF+REQL Sbjct: 122 YRRGEPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLF 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 L+ + T+ HI LR K+E A +I V+GVGYR++ +A Sbjct: 182 QRLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGEAR 230 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 128/224 (57%), Gaps = 2/224 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LIVEDE L L LR + T+++ G L + D++LLDLMLPG G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C+++R S +P++MVTA+ EID+++GLE+GADDY+ KPYS RE++AR++ +LRR Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDD 123 Query: 133 E--LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 P+ +D R S G + L EF LL+ L G+V +R QL++ ++ Sbjct: 124 SEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVW 183 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 V +T+D H+K LR K+E+ A + V G+GY+ E Sbjct: 184 GADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 137/226 (60%), Gaps = 3/226 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LIV+D+ KL LL YL Y + + G+ ++ V+ + P +++LD+M+PG DGL + Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 R++R S++P++M+TAK E+ DR++GLE+GADDYI KP++PRE++AR+K +LRR K Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGPE 126 Query: 133 ELQQ---QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 Q + +++ + G L+L+ EF+LLK L PG+ +R+ L+ + Sbjct: 127 NNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLMTSV 186 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + DR+ID HI LR + +S I+ V+G GY + ++ Sbjct: 187 WGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVSE 232 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 130/220 (59%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+++DE KL +LL YL+ + +G + L R PDLILLD+M+P GL Sbjct: 5 ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLDF 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 R + ++ PI+++TAKIE+ D+++GLE+GADDYI KP++ REV+ARV+ +LRR + Sbjct: 65 MRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYKAQ 124 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 ++++ + +DLTP+EF +L TL PG VFSR LL+ Sbjct: 125 PQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDRTSGQ 184 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +RTID HI+NLR K+E +I VYGVGYR+ Sbjct: 185 AYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRF 224 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 6/228 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+D+P + + YL + + G + + PDLI+LD+ LP DG + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR IR + +PI+ ++ + ++ID+++G IG DDYI KP+SP +VA+VK+ +RR K Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKELS 125 Query: 133 ELQQQDA------ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + L ID + + GK + L EF+LL L+ G+VFS E L Sbjct: 126 GSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLF 185 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + ++ RT+ HI NLR+K+E A +I V G+GY++ Sbjct: 186 DSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNG 233 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 89/243 (36%), Positives = 139/243 (57%), Gaps = 12/243 (4%) Query: 2 TELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYV----------R 51 T + IL++EDE + + ++ L+ Y + S G + L + Sbjct: 13 TAGVLPAAVANILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPE 72 Query: 52 QTPPDLILLDLMLPGTDGLTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICK 110 Q LI+LD+MLPG +GL LCR IRR +PI+M++AK EIDR++GLEIGADDY+ K Sbjct: 73 QGEVCLIILDVMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAK 132 Query: 111 PYSPREVVARVKTILRRCKPQR-ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLL 169 P+ RE++AR + +LRR + Q+ L L + +A+ RG+ L+L+P E++LL Sbjct: 133 PFGMREMLARCRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLL 192 Query: 170 KTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVG 229 + P +V+ REQLL+ ++ V +T+D HI+ LR K+E+ + +I V G G Sbjct: 193 ELFMRHPRRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFG 252 Query: 230 YRW 232 YR+ Sbjct: 253 YRF 255 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 89/230 (38%), Positives = 136/230 (59%), Gaps = 2/230 (0%) Query: 2 TELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLD 61 T + R+L+V+D+ L ++L LR Y P +S G++ + +QT PD++LLD Sbjct: 7 TAPQNGPSRGRVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLD 66 Query: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 LMLPG +GL +C++IR S +PIVM+TAK + ID + GLE GADDY+ KP+ P E+VARV Sbjct: 67 LMLPGRNGLQICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARV 126 Query: 122 KTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 + LRR + + + + + ID Q + G + LTP EF LL L+ +P +VF+ Sbjct: 127 RAQLRRGETGQA--ENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFT 184 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 RE LL ++ R ++ H++ LR K+E + + V GVGY+ Sbjct: 185 RELLLEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 132/229 (57%), Gaps = 2/229 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 IL+VED+ L + L A + S G L R+T PDLI+LD+MLPG DG Sbjct: 2 TTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGF 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 ++CR + + + +PIV++TA +E R+ GLE+GA DY+ KP+S E++ARV+ ILR + Sbjct: 62 SVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNER 121 Query: 131 QRELQQQDA--ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 QR+ + P+ +D + ++ + ++L+ EF LL L H G SR+ LL Sbjct: 122 QRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLER 181 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 ++ + ++RTID H++ LR KLE A + IR V G+GY ++ A Sbjct: 182 VWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDPAT 230 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 137/238 (57%), Gaps = 10/238 (4%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +L+VEDE K+ ++L +L ++ L +RQ DL++LD+M+PG Sbjct: 2 NKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGL 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG T CR+IR FS++PI+ +TA+ EE DR+LG E+GADDY+ KP+SPRE+V RVK +LRR Sbjct: 62 DGWTTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRR 121 Query: 128 CKPQRELQQQDAE---------SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGK 178 + + E L + +A +G+ L L+P E+ LL L+ G+ Sbjct: 122 RSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGR 181 Query: 179 VFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESL-DAEQSFIRAVYGVGYRWEAD 235 V SR+ LL+ ++ RT+D+H++ LR KL + A S++ V G GY++E + Sbjct: 182 VLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEVN 239 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 142/228 (62%), Gaps = 4/228 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + +VED+ + +L+ +L A +A G+ V+P +TPP+L LLD+M+PG DG Sbjct: 2 KQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADG 61 Query: 70 LTLCREIRRFSDI---PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 L +CR+IR I P++ +TAK E D++ GL++GADDYI KP+SPRE++AR+K +LR Sbjct: 62 LEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLR 121 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R + ++ID G + RG ++ T EFRLL+ L+ PG+VF+R+QLL Sbjct: 122 RFER-PLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + ++ + VT R++D +++ +R K+E + +++ V G GYR+E Sbjct: 181 DAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEV 228 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + IL+V+DEP + L+ L A+Y + +G + V++ D +++DLMLP DG Sbjct: 2 SKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDG 61 Query: 70 LTLCREIRRF-SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + ++IR+F IPI+M+TAK ++D++LGLE+GADDYI KP+SP+E+++R+K ILRR Sbjct: 62 IEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRT 121 Query: 129 KPQRELQQQDAE---SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 L + D + ID R + + LTP EF+LL+ L +V SR+Q+ Sbjct: 122 DRAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQI 181 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L ++ R +D HI +LR KLE+ I+ + G GY + Sbjct: 182 LEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEF 228 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 133/229 (58%), Gaps = 5/229 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + +ILIV+DE ++ L+ YL+ +Y + L + ++ DL +LD+MLPGT G Sbjct: 2 SDKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 LT+C++IR PI+M+T K E+D++ GL IGADDYI KP+ P E++ARVK LRR K Sbjct: 62 LTICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYK 121 Query: 130 PQRELQQQD----AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 +++Q+ S L+I+ + K L LTP EF +L+ L G V S E L Sbjct: 122 KFSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELL 181 Query: 186 LNHLYDDYRVV-TDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ D ++ TI HI++LR K+ +I+ V+GVGY+ E Sbjct: 182 FHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIE 230 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 96/228 (42%), Positives = 135/228 (59%), Gaps = 2/228 (0%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 + N +LI+EDE L ++L YL Y G L ++ PD+++LDLMLP Sbjct: 4 NTNCYTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPN 63 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 G + R+IR+ + PI+M+TAK E +++ GL IGADDY+ KP SPRE++AR+KTILR Sbjct: 64 MSGEEIARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILR 123 Query: 127 RC--KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 R +P R Q+ + ID + RG + LT EF +L TL+ P KVFSRE Sbjct: 124 RVGKEPGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSREN 183 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L + +Y RTID+HIKNLRRK+E + FI+ V+G GY++ Sbjct: 184 LADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 125/233 (53%), Gaps = 7/233 (3%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E ++LIV+DE + ++L L Y S G++ L Q PD+++LD+M+P Sbjct: 12 ETKEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKL 71 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG +C+EIR+ SD+PI+M+TA + DR+ GLE+GADDY+ KP+SP+E+ AR++ +LRR Sbjct: 72 DGYGVCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131 Query: 128 CKPQRELQQQDAESP-----LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 L ID + Q + + LT EF LL+ L G+ FSR Sbjct: 132 TNKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSR 191 Query: 183 EQLLNHLYDD--YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 +L ++ R V R +D HI LR KLE+ + I G GY ++ Sbjct: 192 ADILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 135/233 (57%), Gaps = 8/233 (3%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N +LIVEDE ++ + YL+ Y S+G + L + L ++D+M+P Sbjct: 1 MNFYNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKM 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+T+ ++R D P++M+TAK EE+D++LGL IGADDY+ KP++P E++ARV + LRR Sbjct: 61 DGITMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRR 120 Query: 128 C-------KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 + + L ++ + G+++ +TP EF++L+ L PG+VF Sbjct: 121 YSKYLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVF 180 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 S E++ ++++ + TD T+ H++N+R K+E +++ V+GVGY+ E Sbjct: 181 SAEEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIE 232 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 136/228 (59%), Gaps = 8/228 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 I ++ED+ + +LL + + +G +++Q PD+++LDLM+P DGL Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 73 CREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 C+ +R IP++M+TAK EID+++GLE+GADDY+ KP+S RE++ARVK +LRR K Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 130 P--QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + L I +F+ + +G+ + LT +F+LL L + GKV SR+ ++ Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 H++ + V DRTID HIK LR L+ + I+ + GVGY+WE + Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYG---NCIKTIRGVGYKWECE 228 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 129/228 (56%), Gaps = 3/228 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N IL+V+D+ + LL D+L + S+ ++ +Q+ D ++LD+M+PG Sbjct: 1 MNAKTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGE 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 +G CR IR SD+PI+ ++A+ ++D++ GL +G DDYI K SP E+VARVK +LRR Sbjct: 61 NGFAFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRR 120 Query: 128 CKPQRELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + E L ++ + + GK + LTP E+ LL+ P VFS +QLL Sbjct: 121 SASNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + L+D V T+ H+ LR K+E+ + +I V+G+GYR+E Sbjct: 181 DKLWDG--VGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEG 226 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 133/228 (58%), Gaps = 2/228 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E R+L+V+D+ + ++ YL+ A YA L G+ L + PDL++LDLMLPG Sbjct: 6 EAAARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGV 65 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 GL +CR +R ++P+VM+TA EE DR++GLE GADDY+ KP+SPRE+V RV +ILRR Sbjct: 66 GGLEVCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRR 125 Query: 128 CKPQRELQ-QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + + + + L +D + + G L LT EF LL L PG+ FSR +LL Sbjct: 126 ARTSQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELL 185 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ T+ H++ LR K+E A I V+GVGYR++ Sbjct: 186 EQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDP 232 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 81/237 (34%), Positives = 127/237 (53%), Gaps = 7/237 (2%) Query: 2 TELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLD 61 ++ + +ILI++DE + LL YL+ +Y + + DL +LD Sbjct: 11 MSKGVENMSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILD 70 Query: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 +MLP +G +LC+ IR+ PI+M+TAKIEE D++ GL +GADDY+ KP+ P EVVARV Sbjct: 71 IMLPDMNGFSLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARV 130 Query: 122 KTILRRCKPQRE------LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHE 175 K LRR K + + + + L ++ + G+++ LTP EF +L L Sbjct: 131 KAQLRRYKKYSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSS 190 Query: 176 PGKVFSREQLLNHLYDDYRVV-TDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 G V S E+L + ++ D TI HI++LR KL +I+ ++GVGY+ Sbjct: 191 AGNVVSIEELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYK 247 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 121/226 (53%), Gaps = 2/226 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASY-APTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 PRILIV+DE L L+ L + P L +LD+MLP +G Sbjct: 4 PRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGEG 63 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 LC+++R S+IPI+ ++AK EE+D+LLGL IG DDYI KP+SP+EV RVK LRR Sbjct: 64 YQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRVS 123 Query: 130 -PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + + + P ++E + G+ L+LT E LL P ++ S+E L Sbjct: 124 MMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQ 183 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ + +D T+ HI+ LR K+E +E ++I+ V G+GYR Sbjct: 184 VWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLTV 229 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 97/230 (42%), Positives = 139/230 (60%), Gaps = 9/230 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVR---QTPPDLILLDLMLPGTDG 69 I++VEDE +L L+ LR + +I G L + Q PDLI+LDLMLP DG Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L +CR +R+ PI+M+TA+ E+DR+LGLE+GADDY+ KP+S RE+ ARV ILRR + Sbjct: 64 LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123 Query: 130 PQRELQQ------QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 R L + + L ID + + RG+ + LT EF LL L+ PG+VFSR+ Sbjct: 124 MMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSRD 183 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 LL+ ++ + V DRT+D+HI LR+KL + I ++GVGY++E Sbjct: 184 YLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 135/226 (59%), Gaps = 1/226 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 T ++LI++DE L + L + ++ G++ L D I+LDLMLP DG Sbjct: 16 TMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDG 75 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +TLC IR+ SD+ I+M+TAK +ID++LGLE+GADDY+ KP++ RE++AR++T++RR + Sbjct: 76 ITLCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQE 135 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + + L++D G + ++++LTP EF +L L G+VF RE++ + Sbjct: 136 KGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLV 195 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + + RTID H+KNLR KL+ + + I +GVGY + D Sbjct: 196 WGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 135/238 (56%), Gaps = 5/238 (2%) Query: 1 MTELPIDENTPR-ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLIL 59 M ++ NT + ILI++DE ++ +LL YL+ +A +G L DL++ Sbjct: 1 MRHEAMEGNTIKTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVI 60 Query: 60 LDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVA 119 D+M+P DG L ++IR S++P + ++AK +++D+++GL++GADDY+ KP++P EVV+ Sbjct: 61 ADIMMPMMDGYELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVS 120 Query: 120 RVKTILRR----CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHE 175 RV+ + RR K +++ + +++D + G+ ++T EF++L L Sbjct: 121 RVQALFRRMDVFSKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKH 180 Query: 176 PGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 G+VF++ + H++ + + I +I LR K+E + ++ + G+GYR+E Sbjct: 181 AGRVFTKASIYEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFE 238 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 1/227 (0%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 + PRIL++ED+ ++ + L + G L D++L+DLMLP D Sbjct: 17 SVPRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDID 76 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G CR +RR SD+PI+MVTA+ + D + GLE GADDY+ KP+ +E+ AR++ +LRR Sbjct: 77 GFECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRS 136 Query: 129 KPQRELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + + L I G+ L LT EFRLL L+ P +V+SREQLL Sbjct: 137 RSAGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLE 196 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ R +D H++ LR K+E A + V G+GY+ + Sbjct: 197 RVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+L+VED+P + ++ YLRAA + G L + PDLI+LD MLPG DG Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR IR D+PI+++TA +R+ GLE GADDYI KP+SPRE+V RV++ILRR Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + +D G+ L LT EF LL L PG+ FSREQLL ++ Sbjct: 161 LTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVWG 220 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 T+ ++ LR K+E+ + + V+GVGYR Sbjct: 221 WEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRLN 261 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 97/235 (41%), Positives = 133/235 (56%), Gaps = 5/235 (2%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 RILIVED+ + +L +LR Y + G + L + Q D ++LDLMLPG D Sbjct: 3 QPKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVD 62 Query: 69 GLTLCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 GL +CR R + PI++ +A+ E+ R+LGLE+GADDY+ KP+S E+VARVK +LRR Sbjct: 63 GLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 Query: 128 CKPQRELQQQDA----ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + DA + L ID +AS G LDLTP EF LL + PGKVFSR Sbjct: 123 VDALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRM 182 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 LLN ++ + T+++HI LR K+E+ AE I V+G GY+ A R Sbjct: 183 DLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQR 237 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 8/245 (3%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M +ILIV+D+ KL +L+ DYL Y G + L ++ ++L Sbjct: 1 MNHGETISTKIQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVIL 60 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 D+M+P DG + +++R+ SDIP++M+TA EE DR++GLE+GADDY+ K +S RE++AR Sbjct: 61 DVMMPKMDGFEMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLAR 120 Query: 121 VKTILRRCK-------PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLS 173 ++ + RR + + L I A GK L+LTP E+ LL TL+ Sbjct: 121 LRAVTRRHRLSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLA 180 Query: 174 HEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW- 232 P +V SR+QLL+ + V DR++D HI +LRRKL FI+ V VGY + Sbjct: 181 KFPARVLSRDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFN 240 Query: 233 EADAC 237 + DA Sbjct: 241 DPDAP 245 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 132/238 (55%), Gaps = 1/238 (0%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYA-PTLISHGDQVLPYVRQTPPDLIL 59 M D T +ILIV+DE ++ LL L+ + + G + RQ PDLIL Sbjct: 1 MIHNIPDVYTKKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLIL 60 Query: 60 LDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVA 119 LD+MLP DG ++C +IR+F+ +PI ++AK E++D++LGL IG DDYI KP+SP+EV Sbjct: 61 LDIMLPDLDGYSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAY 120 Query: 120 RVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 ++K RR + + + + IDE + G +L LT EF +L L P ++ Sbjct: 121 KMKAFFRRNQYKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQI 180 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 FS+ +L ++ + + D + H+++LR K+E ++ +++ V G+GY+ Sbjct: 181 FSKARLYEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLNTKGD 238 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 6/228 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +LI++DE ++ +L+ YL Y +G + + + +++LD+M+PG DG Sbjct: 3 NVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQ 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C +IR+ +IPI+M++AK +++D++ GL GADDY+ KP++P E++ARVK+ +RR Sbjct: 63 VCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122 Query: 132 RELQQQ------DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 E + + I++ + + GK L LTP E+ +L L++ G VFS E + Sbjct: 123 NEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAEDI 182 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ + + T+ HI LR K+E E I V+GVGY+ E Sbjct: 183 FKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIE 230 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 137/232 (59%), Gaps = 2/232 (0%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 +E TPRILIVED+ +L L DYL + + G++ + + PDL++LD+MLPG Sbjct: 6 EEQTPRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPG 65 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 +DGLT+CRE+R PI+M+TA+ E++D++LGLE+GADDY+ KP PR ++AR++ +LR Sbjct: 66 SDGLTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLR 125 Query: 127 RCK--PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 R + P E+ Q+ L+ID G + G+++D T AE+ LL L+ G++ SRE Sbjct: 126 RSENAPSEEIPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSRED 185 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 + L DR+ID I +R K+ I+ V GY + + Sbjct: 186 IFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEG 237 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 126/227 (55%), Gaps = 4/227 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +ILIVED+ K+ ++ DYL A + + G L RQ DLILLD+MLPG DG Sbjct: 2 KKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGF 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +CRE+RR+ ++P++MVTA+ EE+D L GL +GADDYI KP++P E+VARV++ + R + Sbjct: 62 AVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYER 121 Query: 131 Q----RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + Q L I ++ K + T EF LL L+ P VFSRE L Sbjct: 122 ILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREALF 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ + T+ HI +R K+E A ++ + G GYR+ Sbjct: 182 ERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFR 228 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 130/229 (56%), Gaps = 2/229 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N ILI +D+ ++ +++ L Y G+Q + PD++++D+M+P Sbjct: 1 MNNGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKL 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGL ++I+ D+PI++++AK + +D+++G ++G DDY KP+SP E+ RVK +LRR Sbjct: 61 DGLEASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRR 120 Query: 128 CKPQRELQQQDA--ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 K E + +D I+ GK + LT EF +L ++ P ++FSR QL Sbjct: 121 SKAVPEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQL 180 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 L +++ + + T+ HI+ LRRK+E A+ I+ V+GVGY++EA Sbjct: 181 LEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEA 229 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 93/222 (41%), Positives = 127/222 (57%), Gaps = 4/222 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P +L+V+DEP++ +L+ YL A G L VR PDL+LLD+M+P DG Sbjct: 7 PVVLVVDDEPRMRELIRLYLAAEC-TVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGW 65 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + IR S +P++M+TA+ DR+ GL +GADDYI KP+ RE+ ARV+ +LRR Sbjct: 66 QTLQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAG 125 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Q E L I A + G+ L LTP EF LL L+ PG+VFSRE+LL+ ++ Sbjct: 126 QVEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIW 185 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 RT+D+HIKNLR KL I V+GVGYR+ Sbjct: 186 GPDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRF 224 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 119/232 (51%), Positives = 149/232 (64%), Gaps = 1/232 (0%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M E I I IVED L LL +YL + +A I GD+++P +R PPDLILL Sbjct: 1 MMERAITMINKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILL 60 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 DLMLPG DG+TLCREIR FS +PI+MVTAK+EEIDRLLGLEIGADDY+CKP+SPREVVAR Sbjct: 61 DLMLPGADGVTLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVAR 120 Query: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 VK +LRR + + PL++ + GK L +T +EF LL PGKVF Sbjct: 121 VKAVLRR-GGEEPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVF 179 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 SR++L+ + DR ID HIKNLR+KL + I +VYGVGY++ Sbjct: 180 SRDELIAKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKF 231 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 95/224 (42%), Positives = 142/224 (63%), Gaps = 2/224 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILI +D+ KL +L+ Y + + L G + L +++ PD+++LD+M+PG DG + Sbjct: 6 ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGFEV 65 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR R+F+DIPI+ ++AK +E DRL+GL +GADDY+ KP+ RE++ARVK+ LRR + + Sbjct: 66 CRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRGEV 125 Query: 133 ELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 Q E L ID+ RF+ + + LTP EF LL L+ P +VFSR QLL Sbjct: 126 LSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLLEKAMG 185 Query: 192 D-YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 Y +RTID+HI+NLR+KLE ++ +I VYGVGY+++ Sbjct: 186 GAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQG 229 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+VED+P + + + YL A + + G + + PDL++LD MLPG DGL L Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 73 CREIRR-FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 C R+ P++M+TA+ EE R+ L GADDY+ KP+S +E+VARV+ +LRR Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + ++ L++D Q G+ +DL EF LL L+ PG+V+SR++LL ++ Sbjct: 134 G-YRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWG 192 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 RTID H++ LR KLE ++ V+GVGY++ Sbjct: 193 YDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAG 235 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 128/231 (55%), Gaps = 2/231 (0%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + + IL+V+DE + + LR A Y +GD L R DL +LD+M+P Sbjct: 1 MSDQPSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G +G LCR +R ++ P++ ++A+ E+D+++GLEIGADDY+ KP+ RE++ARV+ +L Sbjct: 61 GMNGYELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALL 120 Query: 126 RRCKPQREL--QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 RR + E + + +DE R A +DLTP EF LL L GKV SRE Sbjct: 121 RRGQMDAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASRE 180 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 LL + + +T+D+HIK LR KL + + I V G GYR+ A Sbjct: 181 DLLREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 128/227 (56%), Gaps = 2/227 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL++ED+ + ++ +YL S+ + G+ + L+L+DLMLP DG L Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ- 131 C +IR S++PI++V+AK + D++ +GADDY+ KP+SP E+ ARVK +RR + Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + + + + ID + RG+ + LT EF LL L++ PG+VF++E+L +++ Sbjct: 123 PQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAAVWN 182 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 RT+ H+KN+R KL+ +I V+GVGY++ R Sbjct: 183 GDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIGLGNR 228 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 94/227 (41%), Positives = 141/227 (62%), Gaps = 6/227 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RILIV+DEP + ++ +A G+ L +R DL++LD+ LPG DG Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 72 LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + R++R + P++M+TA+ +E+DR++GLE+GADDY+ KP+SPRE+VARV+ +LRR Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 131 QRELQQQDAE-----SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 L+QQ + S L +D R +A++R L L P EF LL L+ PG+VF+RE L Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L ++ V RT+D HI+ LR KL +DAE + I+ +G+GYR+ Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 129/230 (56%), Gaps = 5/230 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +L+VEDE L LL L Y+ + G+ L +T PDL+++D MLP G Sbjct: 2 KAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSG 61 Query: 70 LTLCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 + +CR +R +++PI+M+TA+ EE DR+ GL+ GADDY+ KP+S E+ AR++ +LR Sbjct: 62 IEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLR 121 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R +P + + +D + + + L P EFRLL L PG+VFSREQLL Sbjct: 122 RIRPGLA-EDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 + ++ V RT+D H+ LR+ L + E+ IR V GY ++ +A Sbjct: 181 DAVWGSDVYVEARTVDVHVGRLRKAL-NNKEERDPIRTVRSAGYAFDVNA 229 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 6/227 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILI++DE ++ LL D L +G + + ++ PDLI+LD+M+P DG Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKE-MPDLIVLDIMMPDIDGYE 61 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP- 130 +CR+IR PIV ++AK E+DR+ G +G DDY+ KP+S +E++AR+ LRR K Sbjct: 62 VCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKRA 121 Query: 131 ----QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + + ID + +G + LT EF +L+ LS PG+VFS+EQ+ Sbjct: 122 ILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQIY 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ T+ HIKN+R K+E+LD + +I+ V+G+GY+WE Sbjct: 182 EKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWE 228 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 138/235 (58%), Gaps = 6/235 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+V+D+ +L LL YL + +++ +Q+ + + L++LDLMLPG DG Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 Query: 70 LTLCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 L++CR +R S+ +PI+MVTAK EE+DR++GLEIGADDYI KP++PRE++AR++ +LRR Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 Query: 129 KPQ-----RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + + + A ++ G + + + LT EF +LK L P + SR+ Sbjct: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 +L+N +R+ID I LRR +E A +I+ V+G+GY + D + Sbjct: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 7/235 (2%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 ++ +IL+V+DE + ++L L Y S+G++ L R+ P L++LD+M+P Sbjct: 1 MENQKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DG +C+E+R+ SD+PI+M+TA E DR+ GLEIGADDY+ KP+SP+E+ AR++++L Sbjct: 61 KLDGYGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVL 120 Query: 126 RRCKP-----QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 RR + L ID + Q + + LT EF LL+ L + G+ F Sbjct: 121 RRADKITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPF 180 Query: 181 SREQLLNHLYDD--YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 SR +L ++ R V R +D HI LR KLE + I G GY ++ Sbjct: 181 SRASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 235 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 127/226 (56%), Gaps = 2/226 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++LI+ED+ + +L+ Y+ A Y+ S G++ L PD I+LD+MLP +G Sbjct: 6 KVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGWE 65 Query: 72 LCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C+ IR +PI+M+T K E D + GL IGADDYI KP+ P E++ARVKT+LRR Sbjct: 66 VCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTIL 125 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + + +II ++ + + + P E L L+ P +V +R+QLL+ ++ Sbjct: 126 SESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRVW 185 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 RT+D HIK +R KL A+ S I + GVGYR+E ++ Sbjct: 186 GYEFNGDPRTVDVHIKRIRDKLAEHKAKWS-IVTIRGVGYRFEENS 230 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 126/229 (55%), Gaps = 6/229 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 ++LI+ED+ + L+ L + G + Y D+I+LD+MLP DGL Sbjct: 4 KKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGL 63 Query: 71 TLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C+ +R+ +PI+M+T++ EE D++ L GADDYI KP+S RE+ ARV +RR + Sbjct: 64 EVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYR 123 Query: 130 PQRELQQQDA-----ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 P++E ++ L +D + + K +++T EF LL PG+ +SR + Sbjct: 124 PEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTE 183 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 LL+ ++ + T++SHI LR K+E A+ +I V+GVGY++ Sbjct: 184 LLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFN 232 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASY-APTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 ++LI++DE ++ +L+ L S L Q PDL++LD+MLP +G Sbjct: 39 KVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEGY 98 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C++IR S +PI+ ++AK EE D+++GL IG DDYI KP+SP+EV RVK LRR Sbjct: 99 DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 158 Query: 131 QRELQQQ--DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + Q + P +++ + + + ++LTP E L+ P +V S+E L Sbjct: 159 LQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETLYQA 218 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ + +D T+ HI+ LR K+E+ ++ F+ V G+GY++ Sbjct: 219 VWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFVV 264 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 89/230 (38%), Positives = 143/230 (62%), Gaps = 3/230 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 +++ +I +V+DE K+ +++ YL + YA + +G + + PDLI+LDLMLP Sbjct: 5 VNKYEKKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLP 64 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G +C +R+ S +PI+M+T K +E D L GL+IGADDY+ KP+SPR++VARVK +L Sbjct: 65 DICGEDICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALL 124 Query: 126 RRCK---PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 RR + ++ ++ LII++ ++ G +++LTP E+ +L T+ PGK+F+R Sbjct: 125 RRTEDELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTR 184 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 E+L+ DRTIDSHIKNLR K+E E +I + G+GY++ Sbjct: 185 EELIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 5/233 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + +ILI++DE ++ L+ YL + ++G L PDLI+LD++LP T+G Sbjct: 3 SEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNG 62 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L LC+ +R+ ++ PI+ ++ K ++D++LGL +G DDYI KP+SP E+VAR+ LRR + Sbjct: 63 LELCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNR 122 Query: 130 PQRELQQQ-----DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + L ID + K + LT EF +L LS P VFS Q Sbjct: 123 ILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQ 182 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 L +H++ + RT+ HI NLR+K+E A I + G+GY+ + A Sbjct: 183 LYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDTTAP 235 >UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT Length = 231 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 118/230 (51%), Positives = 158/230 (68%), Gaps = 3/230 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + N IL+VEDE + Q+LI+YL+ + + T G V+ V+ PDLILLD+ LP Sbjct: 1 MTNNDVHILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G +GL +C+EIR FS +PI MVTA+IEEIDRLLGLE+GADDYICKP+SPREVVAR+K + Sbjct: 61 GKNGLEVCKEIRAFSTVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALF 120 Query: 126 RRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 RR + + + IDE + + S++ + LDLTP E+RLLK L PG+V+SR QL Sbjct: 121 RRMQQIGVPEP--TRTGFQIDEAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYSRSQL 178 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLE-SLDAEQSFIRAVYGVGYRWEA 234 L+ Y +++ DR IDSHIKNLR+K+ +L Q I AVYG+GYR+E Sbjct: 179 LDLCYQQEQLIIDRVIDSHIKNLRKKISTALPPGQEVIHAVYGIGYRFEV 228 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 5/225 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+VEDE + +++ L + P D + + + PDLILLD MLPG G+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 72 LCREIRRFS---DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + ++R S DIP+VM+TA+ EE DR+ GLE GADDYI KP+SP+E+VAR+K ++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 P +++ L +D + + L++ P EF+LL P +V+SREQLLNH Sbjct: 124 SPM-AVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ V DRT+D HI+ LR+ LE ++ V G GYR+ Sbjct: 183 VWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFS 226 >UniRef50_UPI000038414E COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038414E Length = 229 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 110/222 (49%), Positives = 161/222 (72%), Gaps = 1/222 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+VEDEP + +L++YLR A Y+P+ ++ G L +R+ PPDL++LD+MLPG DG Sbjct: 6 KILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIMLPGMDGTA 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CRE+RRFS IP++MVTA++EEIDRLLGLE+GADDYICKP+SPREVVAR+ ++ RR + Sbjct: 66 VCRELRRFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRRMEWG 125 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + + L ID+ + G L LTP EFRL++ L+ PG++++R Q+L+ Y Sbjct: 126 NPVPAS-GPAQLEIDDAGLRICINGNRLPLTPTEFRLMRLLASSPGRIYTRAQILDLAYH 184 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + V+DR IDSH+KN+R+K+ S+ + I +VYG+GYR+E Sbjct: 185 GDQDVSDRIIDSHVKNIRKKISSVWPDVDVIHSVYGIGYRYE 226 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 133/221 (60%), Gaps = 2/221 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LI+ED+P + +L+ Y+ Y + G+ L +T PD I LD+MLP DG L Sbjct: 8 VLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWEL 67 Query: 73 CREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 C+EIR IPI+M+T K E D++ GL+IGADDY+ KP+ P E+VAR+K ++RR Sbjct: 68 CQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADLL 127 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + Q + L++D+ ++A+ K + + P E LL L+ P +VF+R+QLL+ ++ Sbjct: 128 NDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIWG 187 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 RTID HIK +R KL DA+ + I+ + GVGY++ Sbjct: 188 YAFEGDPRTIDVHIKRIREKLTEADAKWT-IKTIRGVGYKF 227 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 93/260 (35%), Positives = 140/260 (53%), Gaps = 37/260 (14%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIVEDE + +L+ YL + + G L R PDLI+LDLM+PG DGL + Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 73 CREIRRFSDI---PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC- 128 C +R+ ++I I+M+TA+ EE+DR++GL GADDYI KP+SPRE+VARV+ +LRR Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 129 KPQRELQQQDAESPLIIDEGRFQAS---------------------------------WR 155 + + + + +D + AS Sbjct: 123 RGSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQLEIA 182 Query: 156 GKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESL 215 L+LTP EF LL T PG+V++R QL++ L+ + +R +D+HI LR+K+E Sbjct: 183 QIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRKKIEPD 242 Query: 216 DAEQSFIRAVYGVGYRWEAD 235 + +F++ V GVGYR+E + Sbjct: 243 PSAPTFVKTVVGVGYRFEDE 262 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 123/232 (53%), Gaps = 6/232 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 IL+V+DEP + LL L + + G Q L Q D I+LDLMLP DG+ Sbjct: 2 KTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGI 61 Query: 71 TLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC- 128 + ++IR PI+++TAK E D+++GLE+GADDY+ KP+SPRE++AR++ I RR Sbjct: 62 AVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTT 121 Query: 129 ----KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 +P + + L +DE A L LTP EF LL H KV SRE+ Sbjct: 122 QPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSREK 181 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 LLN ++ R +D + +LR K+E +++ V G GY+ E A Sbjct: 182 LLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDPA 233 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 139/227 (61%), Gaps = 3/227 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ILI +D P + +L Y + P + + G++ + RQ P ++LLD+M+P DG Sbjct: 3 HILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGYE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC--- 128 +CR+IR SD+P++++TA+ E+ ++++GL+IGADDYI KP+SP EV+AR++ ILRR Sbjct: 63 VCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTKK 122 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + ++ + + + L I+ + G + LT E + TL+ P KVF+R+ LL+ Sbjct: 123 ENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLDS 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 L+ RT+DSHIK LR KL+ L+ I+ ++GVGY++E D Sbjct: 183 LWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVD 229 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 118/227 (51%), Positives = 162/227 (71%), Gaps = 6/227 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ILIVEDE K+ LL DYL A Y T++ G +V+ V+ DLILLDLMLPG DGLT Sbjct: 3 HILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDGLT 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP- 130 +CREI+ FS+I I+MVTA+++EIDRLLGLE+GADDYICKP+SPREVVARVKTILRR P Sbjct: 63 ICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRINPP 122 Query: 131 -----QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + +Q + + ++ +QA+ ++LT EF LL L+ PG+++SR QL Sbjct: 123 LTTGINTNIAKQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRIYSRSQL 182 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ +Y D RVV++RTIDSHIK LR+KL +++++ +++VY VGY+ Sbjct: 183 IDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKL 229 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 69/222 (31%), Positives = 130/222 (58%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+VED+ K+ + L L+A +Y G+ + + + DL++LDL LP DG + Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 + +EI+ D+P++++TA+ EE+D++ G +G DDY+ KP+SP E++ R+K +LRR + Sbjct: 63 VLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRKG 122 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 R ++ + ++ + G+ ++LT E+ LL+ L P ++F++EQ+++ L+ Sbjct: 123 RGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLWP 182 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 D + ++ LR K+E + I+ V+GVGY+ E Sbjct: 183 DTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYKAE 224 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 130/232 (56%), Gaps = 4/232 (1%) Query: 4 LPIDENTP-RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDL 62 +P P R+L+V+DE L Q++ YL A + G Q + R+ PD+++LDL Sbjct: 33 IPTTATPPGRVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDL 92 Query: 63 MLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVK 122 LP DGL +CR IR FSD I+M+TA+ E D++ GL +GADDYI KP+S RE+V RV Sbjct: 93 GLPELDGLEVCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVH 152 Query: 123 TILRRCKPQRELQQQDAE---SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 +LRR + Q LI+D Q ++LT EF LL L+ PG+V Sbjct: 153 AVLRRPRTSTTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQV 212 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 +R L+ ++D V +R +D HI NLRRKL + + FI V GVGYR Sbjct: 213 LTRHDLVTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 137/227 (60%), Gaps = 7/227 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R ++VEDE +L ++ YL A Y L G + + R+ PD+++LDL LPG DG+ Sbjct: 65 RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR +R FSD +VM+TA+ +E+D L+GL +GADDY+ KP+SPRE++AR++ ILRR +P+ Sbjct: 125 VCRRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPK 184 Query: 132 -------RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 L ID + R +++ LT EF LL TL+ P VFSR Q Sbjct: 185 TGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQ 244 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 L++ ++ + V + +D HI +LRRKL+ + ++R V GVGYR Sbjct: 245 LIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYR 291 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 309 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 134/231 (58%), Gaps = 5/231 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + +ILI +D + + + YL+ G + L PDL++LDLM+P Sbjct: 2 SSIKKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKI 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 G +C+EIR+ S++PI+M+TAK EEIDR++GLEIGADDYI KP+SPREVV R+KTI RR Sbjct: 62 FGTEVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRR 121 Query: 128 CKPQRELQQQD----AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + + ID +++ + +D+TP E ++L L+ G+V SRE Sbjct: 122 VGNANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSRE 181 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++L+ ++ R +D+ IK +R+K+ + S I+ VYG+GY++E Sbjct: 182 EILDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWS-IKTVYGIGYKFEV 231 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 309 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 130/231 (56%), Gaps = 4/231 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +IL+++DE + L L+ + +G + + + PDL+LLDLMLP G Sbjct: 2 KKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSGY 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 LC+EI + S+IP++MV+AK E ID++LGLE+GA+DYI KP+ RE++AR+K +LRR + Sbjct: 62 DLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYEH 121 Query: 131 QRELQQQDAE----SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 E + + L I+ G + LT E+ +L+TL P K+F+R++LL Sbjct: 122 NDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDELL 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 ++ R++D I LR+K+E +++ +YG GY+ D+ Sbjct: 182 EIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGDST 232 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 131/226 (57%), Gaps = 2/226 (0%) Query: 14 LIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLC 73 L+V+D+ + +L YL A + G L + Q P D+++LDLMLP DG + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 74 REIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 E+RR +P++M+TA +E DR++GL+ GADDY+ KP+SPRE+V+RV+ +LRR Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 133 ELQQQDAESP-LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + + P LI+D + + +L+LTP EF LL L+ P +VFSRE LL+ ++ Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 RT+D H+ LR+KL + + ++ V+G GYR+ A Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVKAR 227 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 4/225 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +LIVEDE ++ L+ DY + + S G++ L + DL +LD+M+P DG Sbjct: 2 NKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L +CR IR S+ PI+++TAK +E D+LLG E+GADDY+ KP+SP+ ++A+ K +LRR Sbjct: 62 LAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTG 121 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + D L I++ + G+ L L+P E+ LL LS G SR+++L+++ Sbjct: 122 TLNDKNILDFNG-LTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNV 180 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + RT+D++IK LR KL + ++I V G GY++E Sbjct: 181 WGYDYFGDIRTVDTNIKRLREKLLD---KANYIATVRGSGYKFEV 222 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 134/228 (58%), Gaps = 5/228 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIVED+ ++ LL +++ + ++ G L + DLILLDL +P +G+ + Sbjct: 10 ILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVEV 69 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CRE+R+ + PI+MVTAK EEID++LGLEIGADDYI KP+S RE+ AR K ++RR Sbjct: 70 CRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDAAN 129 Query: 133 E-----LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + L ++ + + GK +DL+P EF LL L++ PG+ +SR +LL+ Sbjct: 130 QQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSELLD 189 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ + T++SHI LR K+E +I +G+GYR+ D Sbjct: 190 VIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 100/230 (43%), Positives = 143/230 (62%), Gaps = 6/230 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL++ED+P + L+ YL+ + +S G L R+ PD ILLDLMLPG DG Sbjct: 2 AKKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDG 61 Query: 70 LTLCREIRRF---SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 LT+ R I++ S P+V+VTAK EE DR++GLE+GADDYI KP+ P+E+VARVK +LR Sbjct: 62 LTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLR 121 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R + Q+ L ++ + P+ ID GR +A++ G LT EF LL L G+V RE LL Sbjct: 122 RRETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLL 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 N ++ D TDRT+D HI+ LR+K+ A ++ V +GYR+ + Sbjct: 182 NTVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRFREEG 228 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 93/228 (40%), Positives = 132/228 (57%), Gaps = 2/228 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 IL+ +DE K+ +L YL A + + +G +VL + P LI+LDLMLP G Sbjct: 5 HTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIPGE 64 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C +R S +PI+M+TAK + DRL GL+IGADDY+ KP++P EVVARV+ ILRR Sbjct: 65 EVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRTML 124 Query: 131 QRELQQQD--AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 L + + L+ID G +LT E++LL LS P +VFSRE+L+ Sbjct: 125 DHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREELIER 184 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 ++ RTID+H+KNLR K+E +I+ VYG+GYR+ D Sbjct: 185 VFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGGDG 232 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 127/221 (57%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ILI+EDE + ++ YL Y +G + R+ DL++LDLMLP DG Sbjct: 3 NILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGEE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+ +R+ SD+ I M+TAK D++ GL IGAD+Y+ KP SPRE+ ARV + RR + Sbjct: 63 VCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGCK 122 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 +E ++ LIID + G+ ++LTP EF +L L+ GKVF+RE ++ + Sbjct: 123 KENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIERAFG 182 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +DR+ID HIKNLR+K+E +I V +GY++ Sbjct: 183 MEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 309 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 4/228 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIVED+ ++ +L+ D L Y G + +R L++LD+MLP G Sbjct: 6 KILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYE 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK-- 129 + ++IR + P+++++AK EE D+++GL +GADDY+ KP+ E+ ARVK LRR Sbjct: 66 VLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLNF 125 Query: 130 --PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + Q + ++ ++ + LT EF +LK P KVF++ QL Sbjct: 126 SWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQLFK 185 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ + + + T+ HI+ LR K+E + S+I+ ++G+GY+ + Sbjct: 186 SIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 134/228 (58%), Gaps = 3/228 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +IL+ EDE + ++ L+ A Y +G + L Y Q D++LLD+M+P DG Sbjct: 2 TKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGF 61 Query: 71 TLCREIRRFSDI-PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C + R ++ I+M+TA+ E D+++GL +GADDYI KP+SP E++AR++++LRR + Sbjct: 62 AVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVE 121 Query: 130 --PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 +R+ ++ P ID G + G +++TP E+ LL +V SR++LL+ Sbjct: 122 TLRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELLD 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ + +T+D +I+ LR+K+E AE FI ++G GY+W + Sbjct: 182 AVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWRNE 229 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 85/222 (38%), Positives = 139/222 (62%), Gaps = 5/222 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 I IV+D+ + Q++ YL+ Y T I ++ + ++ PPDL +LD+MLPG +G Sbjct: 5 HIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGMNGYE 64 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 CR IR S+ PI+MV+A+ EE+D++LGLE+G+DDY+ KP+SPRE+VARV L+R K Sbjct: 65 FCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWKQM 124 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + +Q A S L++D+ + G+ +++T EF++L LS P + FSR++LL+ ++ Sbjct: 125 KSHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELLSLIWG 184 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 +DR +D I+ +R+KL+ + + V+G GYR Sbjct: 185 FDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRLR 221 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 309 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 140/241 (58%), Gaps = 11/241 (4%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + E+ P IL+VED L ++L+ L Y + G L +Q PDL++LD MLP Sbjct: 1 MAEHVPTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DGL + R IR+ P++M+TA+ EE D ++GLE+GADDY+ KP+ RE++ARV+ +L Sbjct: 61 QLDGLEVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALL 120 Query: 126 RRCKPQRELQQQDAE--------SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 RR + ++L Q DA+ L++D + R + LDLTP EF +L L PG Sbjct: 121 RRDQRIQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPG 180 Query: 178 KVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 + FSR LL+ ++ V DR++D+ + LR+KL I V+G+GYR +A+A Sbjct: 181 RAFSRNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRLQAEAP 237 Query: 238 R 238 R Sbjct: 238 R 238 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 107/226 (47%), Positives = 153/226 (67%), Gaps = 6/226 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +++VEDE +L L+ DYL A+ + ++ G + Q P+L++LDLM+P DGL Sbjct: 2 KHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDGL 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 T+CR++R SD+PI+MVTA+ EEIDR+LGL +GADDY+CKP+SP+E+VARV+ +LRR Sbjct: 62 TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLDR 121 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + E +Q D ID+ + + ++ K L+LTP EFRLL+ G+V+SR QLL+H+ Sbjct: 122 KAEPEQNDL---FRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQLLDHIN 178 Query: 191 DDYRVVTDRTIDSHIKNLRRKL---ESLDAEQSFIRAVYGVGYRWE 233 D V DR IDSHIKNLRRK+ +++AVYGVGYR+E Sbjct: 179 PDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRFE 224 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 10/224 (4%) Query: 13 ILIVEDEPKLGQLLIDYLRAAS-YAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 I+I+ED+ + Q + L + T+ + G+ L V + PP+LILLD+ LP +G Sbjct: 5 IVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLMNGFE 64 Query: 72 LCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 +CR +RR + +PI+M+TA+ +E D++ GL +GADDYI KP+S RE++AR+ +LRR Sbjct: 65 ICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAVLRRT 124 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + D L ID F +G+ ++LT EF LLK L+ G+V +RE LL+ Sbjct: 125 EGTPSSVYDD--GTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLLDR 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ RT+D HI+ +R+KL +I G+GYR+ Sbjct: 183 VWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRF 222 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 5/229 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIVED+ + ++ + L Y HG + + + ++++D+M+P DG+ Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 R IR S +PI++++AK E+ D+++GL +GADDYI KP+S E++ARVK +RR Sbjct: 65 SMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIYY 124 Query: 132 RELQ-----QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 E + + + D + + GK L LT E ++LK P +VF++ Q+ Sbjct: 125 NETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQIY 184 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + ++ + + T+ H++ LR K+E I V+G+GY+ D Sbjct: 185 DSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGD 233 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 6/225 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +I+++EDEP + LL +L++ Y + G + L V+ PDL+LLDLMLPG G Sbjct: 2 AHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSG 61 Query: 70 LTLCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 +C+ ++ + IPI+M+TA+ +E+DR+LG E+GADDY+ KP+SPRE++ R+KT+LR Sbjct: 62 TDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLR 121 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R L D + G LTP EF L GKV SREQLL Sbjct: 122 RNVNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQLL 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 ++ + RT+D+H++ LR+KL ++ V G+GYR Sbjct: 182 SNAWGYEFEGYSRTVDTHVRRLRKKLGPY---ADWLETVRGIGYR 223 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 3/228 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +L+V+DE + LL YL + ++G++ L D+ILLDLMLP DG + Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C++IR + I+M+TA+ E D++ GL IGADDY+ KP+ P E++ARV +++RR + Sbjct: 76 CKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAITQ 135 Query: 133 ELQQQDAESP---LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 +++Q+A L I + ++ T EF L +L+ + FSRE+L+N + Sbjct: 136 SIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELVNLI 195 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 + D R +D+HIKN+R K + + I+ V+GVGY++ Sbjct: 196 WGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNGAGT 243 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 85/241 (35%), Positives = 136/241 (56%), Gaps = 10/241 (4%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 IL+V+D+P++ LL YL + + G ++ + DL++LD+MLPG Sbjct: 2 NTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGD 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGLTLCR++R S++P++M+TA ++ DR++GLE+GADDY+ KP++PRE+VAR++T+LRR Sbjct: 62 DGLTLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRR 121 Query: 128 CKPQRE---------LQQQDAESPLIIDEG-RFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 + E + + + +D R + G +++L+ AE+RLL+ P Sbjct: 122 ARALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPN 181 Query: 178 KVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 +V SR+QLL+ DR+ID + LR +L E I+ V G GY D Sbjct: 182 RVMSRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATDVE 241 Query: 238 R 238 R Sbjct: 242 R 242 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 134/235 (57%), Gaps = 10/235 (4%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N +IL VEDE + L L + + + G Q L Y+ + D I+LD+ LP Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 +G +C+++R+ P++ +TA+ +EIDR++GLEIGADDY KP+S RE+VAR+K I RR Sbjct: 62 NGFEVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRR 121 Query: 128 CKPQRE----------LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 + Q + ++ + + Q + G++L LT E+RLL L P Sbjct: 122 MEIQAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPE 181 Query: 178 KVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 KVFSR+QL++H+++ +RT+D+HIK+LR+KL+ + + IR G GY Sbjct: 182 KVFSRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSL 236 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 139/224 (62%), Gaps = 2/224 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 + IVEDEP + ++L YL + Y +G + L +R+ PD ++LDLMLP G + Sbjct: 5 VFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEEI 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C++IR SD+PI+M++AK E DR+ G+ IGADDY+ KP+SPREV+ R++ ILRR + Sbjct: 65 CKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTLN 124 Query: 133 ELQQ-QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 +++ + +IID + + + + LTP EF ++ ++ PG+VFSR LL + + Sbjct: 125 KMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADLLQKIQE 184 Query: 192 DYRV-VTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 D +R+ID HIKNLR+KLE + +I V+G+GY++ Sbjct: 185 DSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGG 228 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 130/224 (58%), Gaps = 2/224 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 RIL+V+D+ L +++ LR + P + G Q L R + PDL+LLDLMLPG+ Sbjct: 29 TMKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGS 88 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+ +CR+IR SD+PIVM+TAK + D + GLE GADDY+ KP+ P E+VARV+ LR Sbjct: 89 DGIEVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR- 147 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 ++ + + + ID + G+ + LTP EF LL L+ +P +VF+RE LL Sbjct: 148 -PGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLE 206 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 ++ R ++ H++ LR K+E + V GVGY+ Sbjct: 207 QVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 135/225 (60%), Gaps = 2/225 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + R+LI++D+ +L LL +YLR + +H L ++ PPDL++LD+MLP T Sbjct: 13 PDPTRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDT 72 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGL +CRE+R S IPI+M+TA+ + DR++GLE+GADDY+ KP+ PRE+VAR++ +LRR Sbjct: 73 DGLAVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR 132 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 R+ + L ++ + L+LT AEF LL L+ G+V SR+++L+ Sbjct: 133 --GTRDDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILD 190 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 DR+ID + LR+KL +FIR V GVGY + Sbjct: 191 GTRGIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSF 235 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 9/233 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVR-QTPPDLILLDLMLPGTD 68 +IL+V+D+ ++ L+ +L + Y + L ++ + L +LD+M+PG D Sbjct: 24 KAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMD 83 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 GL++ ++IR S IP++M++AK ++D+++GL GADDY+ KP++P E+ ARVK LRR Sbjct: 84 GLSMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRF 143 Query: 129 KPQRELQ--------QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 Q + PL I++ + K LTP E+ +L L+ PG+VF Sbjct: 144 TEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVF 203 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 S + + ++++ + T+ HI+ LR K+E I+ V+GVGY+ E Sbjct: 204 STDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIE 256 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 130/226 (57%), Gaps = 4/226 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +LIVEDE + ++ DYL + ++ G + + Y++++ PD ++LDL LP DG+ Sbjct: 5 NVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDCDGIE 64 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC--- 128 +CR+IR S++ I++++A+ + D++LGL GADDY+ KP+S E+VAR+ LRR Sbjct: 65 ICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRRQDRW 124 Query: 129 -KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + +II++ + K + L+ EF LL L+ +VFS+ QLL+ Sbjct: 125 LQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSKSQLLD 184 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ + TI +I+ +R K+E + +++ V+GVGY++ Sbjct: 185 AVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFS 230 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 136/226 (60%), Gaps = 5/226 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTP-PDLILLDLMLPGTDG 69 ++L++EDE + +L YL Y +G + L + +ILLD+MLP G Sbjct: 3 HKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDISG 62 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +L + IR S +P++M+TA+ EE D+LLG E+GADDY+ KP+SPREVVARVK IL R Sbjct: 63 WSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTY 122 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 ++ + + + +++D + + GK ++LTP EF LLK L GKV SRE+ LN + Sbjct: 123 GSQDDGKTEYQG-IVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEV 181 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + RT+D+HIK LR KL +++ I+ V+G+GY+ E D Sbjct: 182 WGYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEGD 224 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 88/237 (37%), Positives = 133/237 (56%), Gaps = 11/237 (4%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYV--RQTPPDLILLDLMLPGT 67 + +IL++ED+P L +L+ DYL Y G + L + ++ DLI+LDLMLP Sbjct: 2 SKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDM 61 Query: 68 DGLTLCREIR-----RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVK 122 DG+ +C++IR + + +PIVM+TAK + DR+LGLE+GADDYI KP+ PRE++AR++ Sbjct: 62 DGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIR 121 Query: 123 TILRRCKPQRELQQQ---DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 +LRR + + Q L + + + K + LT +F+LL + GKV Sbjct: 122 AVLRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKV 181 Query: 180 FSREQLLNHLYDDYRVVT-DRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +REQL + +D DR ID HI LR +E + I V GVGY++ D Sbjct: 182 LNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 238 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 131/232 (56%), Gaps = 10/232 (4%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 RIL+ +D ++ ++L L Y G++VL + DLI+LD+M+P +G Sbjct: 3 TRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLF-DSSIDLIVLDIMMPNMNGY 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 C ++R S++PI+ +TAK + D+ LG GADDY+ KP+S E+ ARVK +LRR + Sbjct: 62 QTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQV 121 Query: 131 QRELQQQ---DAESPLIIDEGRFQ-----ASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + +++ D E L +D + A GK ++LT EF +L TL P ++FS Sbjct: 122 YKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIFSA 181 Query: 183 EQLLNHLYDD-YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 EQL +++ Y + TI HI+NLR+K+E A +I+ ++G GYR+E Sbjct: 182 EQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 138/228 (60%), Gaps = 4/228 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL++ED+ ++ ++ +L +Y+ S G + L ++ DLI+LD+MLP DG T Sbjct: 4 KILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDGFT 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+ IR S++PI++++AK +E+D++ GL++GADDYI KP+S E+ ARV+ ++R K Sbjct: 64 VCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKGY 123 Query: 132 RELQQQDA----ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + ++ ++ L I + + K ++LT EF LL L+ KVF++++L Sbjct: 124 NKKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKKELYE 183 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++++ + + TI H+K LR+KL+ +I+ V+G GY++ + Sbjct: 184 NVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFIGE 231 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 130/237 (54%), Gaps = 12/237 (5%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N+ IL+VEDE ++ + YL Y +G + L + L ++D+M+P Sbjct: 1 MNSYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKM 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+TL +R + P++M++AK EE+D+++GL IGADDY+ KP+ P E++ARV + LRR Sbjct: 61 DGITLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRR 120 Query: 128 C-----------KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEP 176 + A L ++E + + GK + TP EF++L L Sbjct: 121 YTKYLNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNA 180 Query: 177 GKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 G+VFS +++ ++++ + TD T+ H++N+R K+E +++ V+GVGY+ E Sbjct: 181 GRVFSADEIYERVWNENAINTD-TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 236 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 305 bits (784), Expect = 7e-82, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 128/233 (54%), Gaps = 7/233 (3%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 +++N+ ILIV+D+ + + + L + +G++ L + L +LD+M+P Sbjct: 16 MEKNS--ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMP 73 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DG+ LCR IR +PI+ ++AK ++D+++G GADDYI KP+S E +ARVK L Sbjct: 74 HMDGIELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQL 133 Query: 126 RRC-----KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 RR + ++++ + L IDE G+ ++LT E+ +L ++ +VF Sbjct: 134 RRYTYFNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVF 193 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + E++ ++ + ++ T+ HI LR K+E E FI+ V+GVGY+ E Sbjct: 194 TIEEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 305 bits (783), Expect = 9e-82, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 126/230 (54%), Gaps = 5/230 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 R+LI +DE ++ +LL YL + +G + L + D+ ++D+M+P DG Sbjct: 2 ARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDGY 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 L R+IR D+P++M++AK E D++LGL++GADDYI KP++ EV+ARVK LRR Sbjct: 62 HLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNK 121 Query: 131 QRELQQQ-----DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 +++ L ++ + LT E+++L L GKVF+++Q+ Sbjct: 122 SMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQI 181 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +++++ D I HI NLR K+E +I+ + G+GY+ +++ Sbjct: 182 FEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSN 231 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 87/231 (37%), Positives = 137/231 (59%), Gaps = 6/231 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 ++ I IV+D P + +L+ YL Y T+++ G+++ + + PDLI+LD+M+PG Sbjct: 2 SSSQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGE 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGL+LCR IR S+ P++ ++A+ E++D +LGLE+G DDY+ KP++PRE++ARVK +LRR Sbjct: 62 DGLSLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRR 121 Query: 128 CKPQRELQQQDAESPLIIDEG------RFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 P E E + E R G + L+ EFRLL L +PG++ + Sbjct: 122 ATPASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVT 181 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 R++LLN + DR+ID+ I LRRK+E +IR +G GY + Sbjct: 182 RDELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAF 232 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 131/223 (58%), Gaps = 7/223 (3%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 RILIV+DE ++ +L YL Y + G++ L + P DL++LD+MLP DG Sbjct: 7 KRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGW 66 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 ++ REI+++++ P++M+TA+ + D + G E+GADDYI KP++ + ++ARVK++LR K Sbjct: 67 SILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLR--KT 124 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 ++ L+I++ S ++L P E+ LL L SRE+LLN ++ Sbjct: 125 NNMVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVW 184 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + DRTID+HIKNLR+K+ I+ + G+GY+ + Sbjct: 185 GYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKLD 222 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 128/230 (55%), Gaps = 6/230 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +ILIVED+ + +L DYL + + + + G L +++ DLI+LD+MLP DG Sbjct: 2 KKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDGF 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + R I D+P++MV+AK EEID++ GL +GADDYI KP+SP E+VARVK+ ++ + Sbjct: 62 DILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYER 121 Query: 131 QREL------QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + + L I++ Q K ++L EF LL ++ P +VF +++ Sbjct: 122 LKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKDE 181 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 L ++ + T+ HI+ +R K+E ++ +I V+GVGYR Sbjct: 182 LFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRIRV 231 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 129/229 (56%), Gaps = 2/229 (0%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 + +LIVED + ++ +YL Y + S+G + L R PDL+LLD+M+PG Sbjct: 19 EPGMKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPG 78 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DGL R R +P++ +TA+ E+D++LGLE+GADDY+ KP+S E++ARV+ LR Sbjct: 79 MDGLEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLR 138 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R + L +D RG+ +DLT +EF L+ PG+VF+R + L Sbjct: 139 RSS-EPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLE-L 196 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + + ++RTID H++NLR K+E+ + I V+GVGYR D Sbjct: 197 LEQLQEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPD 245 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 2/224 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+ EDE + +I L+ A + ++G + + + P D++LLD+M+P DG Sbjct: 3 RILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGFE 62 Query: 72 LCREIRR-FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 C IR ++ I+M+TA+ E D++ GL GADDYI KP+SP E+VAR++ +LRR + Sbjct: 63 ACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRVEK 122 Query: 131 -QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 +R+ ++ P ID Q + G+ +DLTP E+ L+ L V SR+ LL+ + Sbjct: 123 VKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALLDAV 182 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + +T+D +I+ LR+K+E + +I ++G GY+W Sbjct: 183 WGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKWR 226 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 139/236 (58%), Gaps = 5/236 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +TP IL+VED+ ++ QL+ YLR ++ ++ + + DLI+LDLMLPG Sbjct: 15 TSTPHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGE 74 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGL++CR +R S +PI+M+TAK EEIDR++GLE+GADDY+ KP++PRE++AR++ +LRR Sbjct: 75 DGLSICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR 134 Query: 128 ----CKPQRELQQQDAESPLIIDEG-RFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + ++ + ++D G R + G + LT AEF LL + PG+V SR Sbjct: 135 GSGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLSR 194 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 +QLL+ +R+ID + +R+K+E I+ + GY + + R Sbjct: 195 DQLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPEVSR 250 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P ILIV+D+P + +L+ +L + G L + + D+++LD+M+P DG Sbjct: 32 PNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C E+R++ DIPI+M+TAK E ++ G +G DDY+ KP+ P E+V RVK +L+R + Sbjct: 92 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + Q ++++ F+ + + + L EF LL TL + G+ SREQL+ ++ Sbjct: 152 --TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVW 209 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 +RT+D HI LR K + ++ S I+ + G+GYR E Sbjct: 210 GYDFEGNERTLDVHINRLREKFQEEKSKFS-IKTIRGLGYRLEV 252 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 4/228 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 ILIV+DE ++ LL L+ Y G++ L + + L++LD+M+P DG Sbjct: 2 NNNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C ++R +IPI+M++AK E+ID++ G+ GADDY+CKP++ E+ R++ + RR Sbjct: 62 FEVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTY 121 Query: 130 PQREL----QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 +IID+ + + + + LT EF +L L+ G+VFS E++ Sbjct: 122 FLNTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEEI 181 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ + ++ T+ H+ LR KLE I V+GVGY+ E Sbjct: 182 FEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIE 229 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 97/224 (43%), Positives = 144/224 (64%), Gaps = 1/224 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + ++LIVEDE + ++L DYL Y +++ GD+V+ +V+ +ILLD+MLP Sbjct: 1 MSNEQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRL 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG T+CRE+R+FSD+PI+M+TAK+EE+DR++G E+G DDYICKP+SPREVVARV +LRR Sbjct: 61 DGKTVCREVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRR 120 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 ++ A P+ +++ A G L LTP+EF + L P +VF+R QL+ Sbjct: 121 T-FKKSSDDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQLIE 179 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 + +RTID HIKNLR+K+ + I++ YG GY+ Sbjct: 180 KVQGYNYDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYK 223 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 139/227 (61%), Gaps = 6/227 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPD--LILLDLMLPGTDG 69 +ILIV+D+ ++ QLL Y R Y P +G + + T PD L++LDLM+P +G Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKL-NTMPDISLVILDLMMPEMNG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 + + R++R+ S IPI++++AK ++D++ GL GADDY+ KP++P EV+ARVK++LRR + Sbjct: 61 MDVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 120 Query: 130 PQRELQQQDA--ESPLIIDEGRFQA-SWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 Q + D PL+I++ + + +G + LT EF +L L+ P +VFS + + Sbjct: 121 NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDIF 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ VV+ +T+ H+ +LR K+E+ + I V+GVGY+ E Sbjct: 181 ERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 227 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 94/227 (41%), Positives = 141/227 (62%), Gaps = 4/227 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + I ++ED+ + +L+ L++A YA L S +L + PP L +LD+M+PG DG Sbjct: 2 SQTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDG 61 Query: 70 LTLCREIRRF---SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 L +CR +R S IPI+ VTA+ E DR+LGLE+GADDYI KP++PRE++ARVK +LR Sbjct: 62 LDVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLR 121 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R + + ++ID Q RG++ T EFRLL L+ PG+VFSR+ LL Sbjct: 122 RFER-PSTPSLISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ D R VT R++D +++ +R K+ES F++ V G GYR+E Sbjct: 181 DAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 1/223 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 I+IV+DE L ++ YL++ Y L G++ L ++ T PDLILLD+ +PG DGL + Sbjct: 4 IMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDGLEV 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CREIR IP++ ++ + +D++ E+GADDY+ KP+ E+ AR+K +R Sbjct: 64 CREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYAMNP 123 Query: 133 ELQ-QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + + L+ID + G+ + LT E +LL + P +V++ EQL + +++ Sbjct: 124 SSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDRIWN 183 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 T+ HI +LRRK+E +I+ V G GYR+ Sbjct: 184 LDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVP 226 >UniRef50_A6VZA5 Two component transcriptional regulator, winged helix family n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZA5_MARMS Length = 226 Score = 302 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 111/224 (49%), Positives = 161/224 (71%), Gaps = 2/224 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++LI+EDEPKL +L+ YL A Y + GD + Y++ D++LLDLMLPG DG+ Sbjct: 3 KVLIIEDEPKLAELMSAYLEQAGYEHHHLDRGDIAVNYIKNNQVDIVLLDLMLPGLDGVE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+++R+FS +PI+MVTAK EEIDRL+GLE+GADDY+CKP+SPRE+VARVK LRR + Sbjct: 63 ICKQVRQFSGVPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREIVARVKANLRRVELD 122 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + + +D R +A+++G ++DLT EF+LL+ L EPG+VF R+ ++ +Y Sbjct: 123 QA--ESPRTDGFDLDVDRLRATYKGDLIDLTTVEFQLLQLLIKEPGRVFGRDLIMKSIYA 180 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 D RVV+DRTIDSHIK LR+K+ ++ E + I +VYG GYR+E + Sbjct: 181 DSRVVSDRTIDSHIKKLRKKISAVAPELNVIHSVYGAGYRFENN 224 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 135/228 (59%), Gaps = 3/228 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 ++LIV+DE K+ +++ YL G+Q L + PDLI+LDLMLP G Sbjct: 5 KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGE 64 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C +R+ S +PI+M+TAKI+E + GL +GADDYI KP+SPRE++AR+ I RR Sbjct: 65 EICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRLNE 124 Query: 131 QR---ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + ++ L+ID + + G+ + LT ++++L TL P K F+RE+L++ Sbjct: 125 EVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTREELIS 184 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 D DR +D+H+KN+R+K+E+ + +I V+G GYR+ + Sbjct: 185 TALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGE 232 >UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAZ5_GEMAT Length = 239 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 129/241 (53%), Gaps = 7/241 (2%) Query: 4 LPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLM 63 P RIL+V+DEP++ L+ +L A Y + G L R+ P LI+LDLM Sbjct: 2 NPAPPAADRILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLM 61 Query: 64 LPGTDGLTLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 LPG G + ++R ++ ++M+TA+ EE DR+ GL +GADDY+ KP+SP E+V R Sbjct: 62 LPGMSGFDVLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLR 121 Query: 121 VKTILRRCKPQRELQ-QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 V ILRR + PL ID G+ ++LTP EF+LL TL+ G+V Sbjct: 122 VGAILRRTGSATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRV 181 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRI 239 R LL +++ + RT+D H++ LR KL + I V G GYR A A R+ Sbjct: 182 QGRGHLLETVWEAAPDIQTRTVDMHVQRLRSKLGAAG---ELIETVRGFGYRLRASAPRL 238 Query: 240 V 240 V Sbjct: 239 V 239 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 128/230 (55%), Gaps = 6/230 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P IL+VED+ + L+ YLRA + + G ++ + DLI++DLMLP DGL Sbjct: 15 PSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGL 74 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +LCR++R S +PI+M+TA+ E+IDR++GLE+GADDY+ KP++PRE++AR+ +LRR Sbjct: 75 SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQAS 134 Query: 131 QRELQQQDAESPLIIDEGRFQASWR------GKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + + D R R G + LT AEF LL+ G+V SRE Sbjct: 135 ALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSREV 194 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 LL DR+ID + +RRK+E+ A+ I+ V GY + Sbjct: 195 LLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTP 244 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 96/230 (41%), Positives = 136/230 (59%), Gaps = 8/230 (3%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P IL+V+DE + +++ L A Y G+ L R PDLI+LDL++PG DG Sbjct: 2 PNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGY 61 Query: 71 TLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 ++CR ++R IPI+M++A+ +E+D++LGLE+GADDYI KP+SPRE+VARV LRR Sbjct: 62 SICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRR 121 Query: 128 CKPQ-----RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 K + R+ + LIID+ GK L EF LL L+ +PGK FSR Sbjct: 122 DKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSR 181 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 LL ++ RT+D HI+ +R+KLE L+A Q +I GVGYR+ Sbjct: 182 YFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRF 231 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 130/229 (56%), Gaps = 6/229 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 ILIV+DE + +++ L A Y + Q + PDLILLD MLPGT G+ Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 71 TLCREIRRFS---DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 L R ++R DIPI+M+TAK EE +++ GLE+GADDYI KP+SPRE+VAR+K +LRR Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 P + L++D + + GK ++ P E+RLL+ + ++R QLL+ Sbjct: 124 TGPGDS-EAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLD 182 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 ++ V +RT+D HI+ LR+ L + ++ V G GYR+ + Sbjct: 183 QVWGGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRFSTKS 229 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 5/229 (2%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASY-APTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 T +IL+V+DE + +L+ L+ ++ T +G + L ++ P D+ILLD+MLP Sbjct: 15 RTEKILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDI 74 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG LCR+IR +++ PI+ VTA+ ++D+L GL IG DDYI KP++P EV AR+ LRR Sbjct: 75 DGFELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRR 134 Query: 128 CKPQRELQQQDAES----PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 +E + + + + + + T E LL L P ++F+ E Sbjct: 135 QHMTQEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTAE 194 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 QL ++ + D+T+ HI LR+K+E ++I + G+GY++ Sbjct: 195 QLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKF 243 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 92/230 (40%), Positives = 132/230 (57%), Gaps = 5/230 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 IL+V+DEP + +L L A YA Q + PDLILLD MLPGT G+ Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 71 TLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 L R ++R S+IPI+M+TAK EE +++ GLE+GADDYI KP+SPRE+VAR+K +LRR Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + E L +D + + + + P E+RLL+ +V++R QLL+ Sbjct: 124 TDSMGISEPIQVEG-LCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLD 182 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 H++ V +RT+D HI+ LR+ L SL+ FI+ V G GYR+ Sbjct: 183 HVWGGNVYVEERTVDVHIRRLRKAL-SLEGHDRFIQTVRGAGYRFSNKVA 231 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 123/231 (53%), Gaps = 8/231 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP-DLILLDLMLPGTD 68 T RILI++D+ L LL DY + G + V P D+++LD+MLP D Sbjct: 2 THRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDID 61 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G ++IR S +P++M+TA+ ++ DR++GLE+GADDY+ KP++PRE++AR+K +LRR Sbjct: 62 GFETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRA 121 Query: 129 KPQRELQQQDA-------ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 E + + ID G+ + +T E +L L G + Sbjct: 122 TASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPLT 181 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 R++LL+ DR+ID HI +R+KLE + +I+ V+G GY W Sbjct: 182 RDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMW 232 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 136/238 (57%), Gaps = 13/238 (5%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RILIVED+ +L L +YL + ++ +G + + ++ PDL++LDLMLPG DGL+ Sbjct: 27 RILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLS 86 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR++R + PI+M+TA+ +++D++LGLE+GADDY+CKP PR ++AR++ +LRR K Q Sbjct: 87 ICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQ 146 Query: 132 RELQQQ-------------DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGK 178 E + + L+ID +A + +DLT AEF LL L+ G+ Sbjct: 147 GEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLASSAGR 206 Query: 179 VFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 V SRE++ L DR+ID + +R K+ I+ V GY + +A Sbjct: 207 VLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFVKEA 264 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 132/240 (55%), Gaps = 18/240 (7%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQ-TPPDLILLDLMLPGTD 68 ILIV+D ++ +LL D L ++ + G+ L + Q P+LILLD+M+P Sbjct: 2 KDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNMS 61 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G LC +IRR D+PI+ ++AK + +D+++G EIGADDYI KP+ E++AR++ LRR Sbjct: 62 GYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRRY 121 Query: 129 KPQRELQQQDAE-------------SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHE 175 + R+ ++ E L I + + + ++L+ EF+LL L+ Sbjct: 122 ERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAEN 181 Query: 176 PGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 G VF+REQ+ + ++ + T+ HIKNLR KLE E+ FI+ +G GY + + Sbjct: 182 AGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE---TERQFIKTQWGTGYVFIGE 237 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 5/224 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +LIVEDE + ++++Y+R + G L ++ P DL++LD+M+P DG Sbjct: 21 ANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDGF 80 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 ++C+ R S++PI+M+TAK E D+L G E GADDY+ KP+SP+ ++A+ +LRR P Sbjct: 81 SVCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSP 140 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 +++ + G+ + LT E+ LL L PG++F+R+QLLN ++ Sbjct: 141 --APLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRIW 198 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 T RT+D+HIK LR+KL E I + GY++E Sbjct: 199 GYDFEGTTRTVDTHIKTLRQKLGD---EGKHIVTLIRSGYKFEV 239 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 3/227 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 ++LI+ED+ + +L YL+ SY G + + V+ P L+LLD++LPG G Sbjct: 2 KEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C++IR S+ PI+ ++ K + D++ GL+ GADDY+ KP+ E+ AR+K LRR K Sbjct: 62 YEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSK 121 Query: 130 PQ---RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 E ++ + L ID + +G + L E +LL L VFS E++ Sbjct: 122 MNANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIY 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ +T+ HI NLRRK+E ++ I+ V G GY++ Sbjct: 182 DQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFS 228 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 14 LIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLC 73 ++VED+ + +++ YL + G++ + +Q DL+LLD+MLP +G+ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 74 REIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR----CK 129 + IR S+IP++M++AK ++D+ LGL GADDYI KP+S E+ ARVK +RR Sbjct: 61 KIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYSA 120 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + + + L ID G+ L LT E++LL + P KVF++EQ+ + Sbjct: 121 EEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRSV 180 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +++ I+ H++ LR K+E + +I+ ++G+GY+ Sbjct: 181 WNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 136/227 (59%), Gaps = 4/227 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTP-PDLILLDLMLPGTDGL 70 +ILIV+D+ ++ +LL Y++ Y P G + + + P L++LD+M+P G+ Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSGM 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + +E+R+ S IPI++V+AK ++D++ GL GADDY+ KP++P EV+ARVK++LRR + Sbjct: 62 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 121 Query: 131 QRELQQQDA--ESPLIIDEGRFQA-SWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + D PL I + + + GK + LT EF +L L+ P +VFS +++ Sbjct: 122 EVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ +V+ +T+ H+ +LR K+E + I V+GVGY+ EA Sbjct: 182 RVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVEA 228 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 91/237 (38%), Positives = 143/237 (60%), Gaps = 7/237 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 IL++ED+P +G L+ L +A Y+ TL + G++ L + + PD+++LDL LP DG+ Sbjct: 2 KTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDGI 61 Query: 71 TLCREIRR-FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR-- 127 +CR +RR + PI +VTA+ EEIDR++GLE+GADDYI KP+S RE+ RV RR Sbjct: 62 EVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWD 121 Query: 128 ----CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 KP + L ID R + + + +++++ EF +L+ ++ PGKVFSRE Sbjct: 122 KKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSRE 181 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV 240 +L ++ +R IDSH+K +R KLE A+ +I ++G+GYR+ + IV Sbjct: 182 MILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDNYDNIV 238 >UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostridium RepID=A7GA24_CLOBL Length = 225 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 136/225 (60%), Gaps = 1/225 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 IL+++DE K+ +++ YL Y + G + L + PDL++LDLMLP G Sbjct: 2 KETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDISG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C IR+ S++PI+M+TAK E L G IG+DDYI KP+SP+++VA+V +L+R K Sbjct: 62 ENVCERIRKESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVK 121 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + + + LIID + + K + LT +E+++L L+ P K+FSRE+L++++ Sbjct: 122 G-NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELMDYI 180 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 D + DR ID+HIKN+R KL+ ++I+ + G+GYR+ Sbjct: 181 SRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 3/231 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + + T IL+VED+ + L LR Y G L PDL++LD+MLP Sbjct: 1 MSDKTRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLP 60 Query: 66 GTDGLTLCREIRRF-SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 +G + +E+R+ D P+V+++AK E D+++GL +GADDY+ KP+ +E++AR+K + Sbjct: 61 ELNGFEVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAV 120 Query: 125 LRRCKPQREL--QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 LRR P + +D + ++LT EF+LL PG+ F+R Sbjct: 121 LRRRYPSAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTR 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 E+LL+ + + + RT+D+ ++ LR K E V G+GYR+E Sbjct: 181 EELLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=9 Tax=Gammaproteobacteria RepID=Q4ZQ24_PSEU2 Length = 247 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 130/238 (54%), Gaps = 3/238 (1%) Query: 4 LPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLM 63 + ++ +T +LIVED+ +L +L DYL+ ++ G + PDL++LDLM Sbjct: 1 MAVEPHTWHVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLM 60 Query: 64 LPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKT 123 LPG DG ++CR +R D PI+M+TA+ ++ D + GL+ GADD++CKP PR ++AR+K Sbjct: 61 LPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKA 120 Query: 124 ILRRCKPQRELQQQ---DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 +LRR + + + PL++D +A R + ++LT AEF LL L G+ Sbjct: 121 LLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTL 180 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 SRE++ L DR+ID I +R K+ I+ V GY + +A + Sbjct: 181 SREEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQ 238 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 129/223 (57%), Gaps = 3/223 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+D+ + +LL D+L S+ ++ +Q P ++LD+M+PG +G L Sbjct: 7 ILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGFEL 66 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 CR IR S +PI+ ++A+ +++D++ GL +G DDYI K SP E+VARVK +LRR +R Sbjct: 67 CRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSATRR 126 Query: 133 ELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 ++++ + L ++ + G + LTP EF LL+ + P VF+ +QLL +D Sbjct: 127 PMEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQLLAKFWD 186 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 V TI H+ LR K+E+ + F+ V+GVGYR+E Sbjct: 187 G--VGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFEG 227 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 136/225 (60%), Gaps = 6/225 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L+V+DE + +L+ +L Y +G +VLP + + PDL++LDLMLPG G+ Sbjct: 11 KVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGMD 70 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK-- 129 LC++I+ +PI+MVTAK E + +LGLE+GADDY+ KP+S RE++ARV+++LRR K Sbjct: 71 LCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKEG 130 Query: 130 -PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + + + + ++ +A +DLT E+++L PG F+R++LL+ Sbjct: 131 EEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRDKLLDR 190 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ VTDR +D +IK LR KL E+ + + G+GYR+ Sbjct: 191 VWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRFN 232 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 133/225 (59%), Gaps = 1/225 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 RILI+EDE + L D L Y + G++ L V PDL+LLD+M+P DG Sbjct: 2 ARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGF 61 Query: 71 TLCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 LC E+RR ++ +PI+M+TAK + DR+ GL+ GADDY+ KP+S E++ARV+ +LRR + Sbjct: 62 ALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQ 121 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 ++ + ID + A K L T E+ +L+ LS PG+ SRE+ L+ + Sbjct: 122 REKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVV 181 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + T RT+D+HI +LR K+ES + +I+ V+GVGYR E Sbjct: 182 WGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP1_OCEIH Length = 227 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 135/229 (58%), Gaps = 8/229 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 T I +VED+ + ++ YL+ Y T++ + + PPD+ +LD+MLPG DG Sbjct: 2 TVHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 C++IR SD+PI++++AK EEID++LGLE+G DDY+ KP+SPRE++ARVK + +R Sbjct: 62 YEFCKKIRNESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRST 121 Query: 130 PQRE---LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R+ + + L++ + + + G+ + T E+ +L L+ P + FSRE+LL Sbjct: 122 SHRQDEIEEDRVKVDQLLVYKNERRVFFEGEEFETTTKEYDMLLLLAENPNRAFSREELL 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ + +DR +D IK +R+K+ ++ + V+G GYR D Sbjct: 182 MKIWGNDYFGSDRAVDDLIKRIRKKMGNIP-----LETVWGFGYRLRKD 225 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 96/233 (41%), Positives = 139/233 (59%), Gaps = 8/233 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +ILIV+DE + +L+ L+ Y + G++ L ++ PDL++LDLMLPG DG Sbjct: 3 NEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDG 62 Query: 70 LTLCREIRRFS---DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 + R IR + +IPIVM+TAK EE D + GLEIGA+DYI KP+SPRE+VAR++ ILR Sbjct: 63 FEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILR 122 Query: 127 RCKPQRELQQQDA--ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 R + Q PL +D GR + LDLT +EF++L L + G VF+R Q Sbjct: 123 RRTRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTRGQ 182 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 +++ ++ + VT+R++D I LR+KL FI V GVGYR+ +A Sbjct: 183 IVDAVHGENYAVTERSVDVTIAGLRKKLGPC---ADFIETVRGVGYRFREEAD 232 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 131/224 (58%), Gaps = 2/224 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +ILIV+DE + L+ +L Y +G + L ++ LI+LD+M+P DG Sbjct: 3 TKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGW 62 Query: 71 TLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C EIR+ + +PI+M+TA+ E D++ GL+IGADDY+ KP+ P E++ARV +LRR Sbjct: 63 EVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAV 122 Query: 130 PQRELQ-QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + Q +Q L +D + + + LTP EF LLK L P +VF+R+QLL Sbjct: 123 VNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLK 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ + +RT+DSHIK++R KL+ + I V+GVGY+ Sbjct: 183 IWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKL 226 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 84/238 (35%), Positives = 140/238 (58%), Gaps = 5/238 (2%) Query: 5 PIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQV-LPYVRQTPPDLILLDLM 63 I N PRIL+V+D+P + LL YLR + ++ G ++ + DL++LD+M Sbjct: 9 AISPNAPRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIM 68 Query: 64 LPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKT 123 LPG DGL++ R + + P++M++A+ E+IDR++GLEIGADDY+ KP++PRE++AR++ Sbjct: 69 LPGEDGLSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRA 128 Query: 124 ILRRCKPQREL----QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 +LRR + + + ++ ID QA LDLT E++LL+ P +V Sbjct: 129 VLRRQRMEPDARGKQDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRV 188 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 +R+Q++++L R DR+ID I LRRK+E+ E ++ ++G GY + Sbjct: 189 INRDQIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSGR 246 >UniRef50_A6LQJ3 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridium RepID=A6LQJ3_CLOB8 Length = 231 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ILIVEDE + L+ ++R +Y S G + L DLILLD+M+P DG++ Sbjct: 2 NILIVEDERDIRNLISLHMRKENYEVYEASDGREALNIFENEKIDLILLDIMMPNVDGIS 61 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 + +++R S IPI+ +TA + D++L L +GADDY+ KP SP E+ ARV + LRRC Sbjct: 62 VIQKVRAISTIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCYKY 121 Query: 132 RELQQQD-AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 E + + L + F+ + +DL P EF++LK L GKVF+++Q+ ++ Sbjct: 122 AEHKDIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQIYEEVW 181 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ I H+ ++R K+E +I+ + G+GY+ E Sbjct: 182 EEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYKIE 224 >UniRef50_C6CSH8 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSH8_PAESJ Length = 240 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 138/235 (58%), Gaps = 8/235 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L++ED+ + +L YL Y+ G++ L V++ PD++LLDLMLP DG+ Sbjct: 3 KVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDGMG 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C IR S +PI++++ K E +R+ L+ GADDY+CKP+S E+ ARV+ ++RR + Sbjct: 63 VCASIRERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQFS 122 Query: 132 RELQQQDAE--------SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + + +P+ +D R RGK+++ T +EF ++K PGKVFSRE Sbjct: 123 ATEAEAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFSRE 182 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 +L+N + VTDR ID HI NLR+K+E E IR V+G GY++ D + Sbjct: 183 ELINTIRGFDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYKYTTDHSQ 237 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 79/242 (32%), Positives = 125/242 (51%), Gaps = 16/242 (6%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 ++ ILI +D+ + +LL YL + Y G + L V+ DL+LLD+M+P Sbjct: 5 SPSSRCILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPR 64 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DG + R +R S +P++MV+AK ++ D+++GL++GADDY+ KP++P E +ARV++ LR Sbjct: 65 IDGYQVLRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLR 124 Query: 127 RCKPQRELQQQDAES--------------PLIIDEGRFQASWRGKMLDLTPAEFRLLKTL 172 R D S L +D + LDLTP EFR+L Sbjct: 125 RAYGMPAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLF 184 Query: 173 SHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 PG+VF+++Q+ + + V + + I LR KL ++I V G+GYR Sbjct: 185 MSHPGRVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPG--AYIATVRGLGYRM 242 Query: 233 EA 234 EA Sbjct: 243 EA 244 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 137/236 (58%), Gaps = 4/236 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N ILIVED+P + +L+D +R++ + + + G + + + DLI+LD MLPG Sbjct: 10 PNQAHILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGE 69 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG ++CR +R +PI+M+TA E+IDR+LGLE+GADDY+ KP++ RE++AR+K+ILRR Sbjct: 70 DGFSICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRR 129 Query: 128 CKPQRELQQQDA---ESPLIIDEGRFQA-SWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 ++ S ID Q G + +T AEF +L P KV +RE Sbjct: 130 ASYAHHQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTRE 189 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRI 239 QLL+ + +R+ID+HI +R+K+E + +FI+ V GY + + R+ Sbjct: 190 QLLSMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFASKVERL 245 >UniRef50_Q4K4R2 DNA-binding response regulator CreB n=53 Tax=Bacteria RepID=Q4K4R2_PSEF5 Length = 229 Score = 299 bits (768), Expect = 5e-80, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 143/224 (63%), Gaps = 2/224 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P ILIVEDE + LI L+ + T +S G L + + +P DLI+LD+ LP G Sbjct: 5 PHILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPADLIILDIGLPDISGF 64 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 C+++RRFS++P++ ++A+ EIDR++GLEIGADDY+ KP+SPREV ARVK IL+R P Sbjct: 65 ETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMVP 124 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + + A +ID R Q S+RG+ L LT EFRLL+ L +P +VFSREQLL+ L Sbjct: 125 RVAPEAVAAL--FVIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLDALG 182 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 V +R IDSHIK+LR KL + A+ I+ G+GY + Sbjct: 183 VMADVGYERNIDSHIKSLRAKLRLVAAQAEPIQTHRGLGYSYSP 226 >UniRef50_B2TMR2 Transcriptional regulatory protein ResD n=1 Tax=Clostridium botulinum B str. Eklund 17B RepID=B2TMR2_CLOBB Length = 227 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 134/222 (60%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 IL+V+DE K+ + + YL + + G + Y DL++LD MLP G Sbjct: 3 NILLVDDEKKICEFVKAYLDKEGFVTDEANDGCTAIRYFDLNRYDLVILDRMLPDISGEE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C IR SD+PI+M+TAKI+E DRL G ++G DDY+CKP++ +E++ RVK+IL+R Sbjct: 63 VCNHIRNKSDVPIIMLTAKIDEEDRLGGFKLGCDDYLCKPFNIKELIFRVKSILKRSGKI 122 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + + I+ + + RGK + LT E+++L ++ P K++SRE+LL + + Sbjct: 123 DFRDIMKFKQGIEINTSSHEVTVRGKKILLTNTEYKILLLMASNPQKIYSREELLESVIE 182 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 +Y DR IDSHIKNLR+K+E + I+ +YGVGYR+E Sbjct: 183 EYYEKMDRVIDSHIKNLRQKIEVNSRDCKIIKTIYGVGYRFE 224 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 126/237 (53%), Gaps = 7/237 (2%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTP-PDLIL 59 M+ + IL+VEDE L + L+ Y + G L + + P PD IL Sbjct: 1 MSSNALGGAQKTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAIL 60 Query: 60 LDLMLPGTDGLTLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPRE 116 LDLMLP G +C+ +R D+P++MVTAK EIDR++G E+GADDY+ KP+S RE Sbjct: 61 LDLMLPDISGTEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRE 120 Query: 117 VVARVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEP 176 ++ R++ +LRR + + L +D + + + LT EFRLL Sbjct: 121 LMLRIRALLRRTERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRR 180 Query: 177 GKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 G+V +R+ LL+ ++ VT RT+D+H+K LR KL ++ + GVGYR+ Sbjct: 181 GRVQTRDALLSDVWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRFR 234 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 IL+VED+P + L YLR Y + + GD + Q DLILLD+ LPG DG Sbjct: 3 NHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDG 62 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC- 128 L L REIR S++ ++MVT K +E+DR++ LE+GADDY+ KP++ RE++AR K +LRR Sbjct: 63 LQLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTL 122 Query: 129 --KPQRELQQQDAESPLIID-EGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + E + Q + + +D R + G + LT EF LL + PG+V +R+ L Sbjct: 123 SAREASEDENQKSFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVMTRDNL 182 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L+++ +DRT+D + LRRK+E+ I V+G+GY + Sbjct: 183 LDYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVF 229 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 299 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 127/230 (55%), Gaps = 5/230 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +IL+VED+ + +++ YL + + G + DL+LLDLMLPG DG Sbjct: 4 KKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGY 63 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C++IR S PI+M+TAK + +++ GL IGADDY+ KP+ E++AR+ +LRR + Sbjct: 64 QVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQ 123 Query: 131 QRELQ-----QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 E + LI D F ++++ E +LLK L P +VF RE+L Sbjct: 124 DHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREEL 183 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + ++ DR ID +IK LR++L+S + I+ V+G+GY++E + Sbjct: 184 IEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEVE 233 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 299 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 132/236 (55%), Gaps = 6/236 (2%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 ++ N ILI +DE + L DY+ Y ++G ++L V Q DL+LLD+M+P Sbjct: 1 MENNQYTILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DG+ RE+R IP++MVTAK +E DR+ GL GADDYI KP+SP+E++AR++ + Sbjct: 61 EMDGMEALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQI 120 Query: 126 RRCKPQR--ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 RR E +++ + ++ + G+ + LT EF LL P +VF+RE Sbjct: 121 RRNYGYNDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNRE 180 Query: 184 QLLNHLYDDYR-VVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 QLL+H++ RT+D+H+K +R K+ + + R VYGVGY E R Sbjct: 181 QLLDHVWGVNYTTGGHRTVDTHMKTMRFKM---GSGGDYFRTVYGVGYVLEDGEGR 233 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 135/230 (58%), Gaps = 9/230 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +ILIV+DE + +LL L Y G++ L V PDL++LDLMLPG DG Sbjct: 3 KEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDG 62 Query: 70 LTLCREIRRFSDI---PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 L + R IR I PI+M++AK EE D + GLE+GADDYI KP+SP+ ++AR++++LR Sbjct: 63 LEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLR 122 Query: 127 RCKPQRELQQQ---DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 R + + A S + I + GK +DLTP+EF +L L+ PG VF+R Sbjct: 123 RQQAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFTRW 182 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 Q+++ + ++ VTDR++D I LR+KLE +I V GVGYR+ Sbjct: 183 QIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRFR 229 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 137/224 (61%), Gaps = 6/224 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYV-RQTPPDLILLDLMLPGTDGL 70 ++L+V+DE ++ +L+ D+L ++Y +G+Q + Q LI+LD+M+P DG Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C+EIR++S +PI+M+TAK +E D LLG E+G D+YI KP+SP+ +VARV+ I+RR Sbjct: 65 QVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRS-- 122 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + L + ++ID+ + ++L+ EF LL G SRE++LN+++ Sbjct: 123 IQTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNNVW 182 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + RTID+H+K LR K+ + +I+ ++G+GY++E Sbjct: 183 NYDYFGDARTIDTHVKKLRSKMGD---KGDYIKTIWGMGYKFEV 223 >UniRef50_A9AXY0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXY0_HERA2 Length = 225 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 78/207 (37%), Positives = 124/207 (59%), Gaps = 1/207 (0%) Query: 26 LIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIV 85 + YL A + L S G L V+Q P L++LDLMLP DGL + + IR+ S+ PI+ Sbjct: 18 MQLYLEQAGFTTYLASDGLAGLALVQQHQPSLVVLDLMLPKLDGLAVFKTIRQTSNTPII 77 Query: 86 MVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLII 145 MVTA+ + +R+ GLE+GADDY+ KP++ RE+VARV+ +LRR +P + Q P+ + Sbjct: 78 MVTARSSDEERIHGLELGADDYVGKPFNARELVARVRAVLRRSQPIQA-SQMLKRGPIEL 136 Query: 146 DEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHI 205 D + + + ++L+ + LL T P ++ SREQLL ++ DR++D+HI Sbjct: 137 DLEQHSCTVNQQPVELSKIQLALLATFMRHPNQILSREQLLEAVFAGDYAGFDRSLDAHI 196 Query: 206 KNLRRKLESLDAEQSFIRAVYGVGYRW 232 LR+++E +I VYG+GY++ Sbjct: 197 ARLRQRIEHDRTNPQYIVTVYGLGYKF 223 >UniRef50_B3E8G4 Two component transcriptional regulator, winged helix family n=4 Tax=Desulfuromonadales RepID=B3E8G4_GEOLS Length = 233 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 129/227 (56%), Gaps = 2/227 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P ILIVED+ K+ +++ YL A + L P ++LDL LP G Sbjct: 3 PPILIVEDDLKIARIIKAYLEGADFRVIHADTARAALEKAEAELPLAVILDLGLPDKSGE 62 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 LC+E++ P++M+TAK E +R+ G +GADDY+ KP SPRE+V RVK +L+R Sbjct: 63 ELCQELKDLGSFPVIMLTAKSSEEERITGFALGADDYVVKPASPRELVYRVKAVLKRYDG 122 Query: 131 QRELQQQDAE--SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + + LI+D R + RG+ +TP EF+LL+ L+ PG+ +SR++L++ Sbjct: 123 AGAGEHPISFNNGTLILDSRRHTVTCRGESCSVTPTEFKLLQALAASPGRTYSRDELVSK 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +R++D+HIKNLR+K+E + FI+ VYG+GY + + Sbjct: 183 ALGYQFDGYERSVDAHIKNLRQKIELDSRKPEFIKTVYGIGYLFSGE 229 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIVEDE + +L+ D L++ + + G + + +L +LD+MLP DG Sbjct: 3 KILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 + + IRR + P++M+TAK ++D+++ +GADDYI KP+S E+ ARVK +LRR + Sbjct: 63 VLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEGT 122 Query: 132 RELQQQDAE-------SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + + L I+ + +G ++ L EF LLK L+ P +V + Q Sbjct: 123 HHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIAQ 182 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 + ++ + D T+ HI LR K+E A ++ V G+GYR Sbjct: 183 IYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRL 230 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 122/232 (52%), Gaps = 8/232 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+LIVED+ + + YL AA + + G +V + + DLILLDLMLPG G Sbjct: 6 RVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKSGYD 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CREIR DIPI+MVTA+ E +D++ GL +GADDYI KP+ P E+VARV LR+ Sbjct: 66 ICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQYDRM 125 Query: 132 --------RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 E ++ + L I ++ + + EF LLK L+ P VFSRE Sbjct: 126 MRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIVFSRE 185 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 QL ++ V T+ HI +R K+E + V+G GYR+ D Sbjct: 186 QLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237 >UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax=Proteobacteria RepID=Q3KAS5_PSEPF Length = 235 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 127/223 (56%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+L+VED+ +L L+ +L Y + GD + + P +++LDLMLPG GL Sbjct: 8 RVLLVEDDERLAALIAHFLEQHGYEVRTVHRGDLAVAAFLEFKPKVVVLDLMLPGQSGLH 67 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CREIR SD PIV++TAK +++D +LGLE GADDY+ KP P ++AR++ + RR P Sbjct: 68 VCREIRSVSDTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQVPD 127 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + LIID + G++++LT EF LL L+ GK+ SR+ +LN + Sbjct: 128 SGVVSSLEFGNLIIDRSCREVRLAGELIELTTMEFELLWLLASAAGKILSRDDILNRMRG 187 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 +R++D +I LR KL+ E I+ V+G GY + Sbjct: 188 IAFDGLNRSVDVYISKLRNKLKDNPREPVCIKTVWGKGYLFNP 230 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 90/227 (39%), Positives = 131/227 (57%), Gaps = 6/227 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +IL++ED+ L LL L ++ + G + RQ PDLILLD+MLP +DGL Sbjct: 7 KKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGL 66 Query: 71 TLCREIRRFSD---IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 +C+ IR+ D IP++ +TA+ E DR++GLE+GA+DY+ KP+ RE++AR+K R Sbjct: 67 DICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR- 125 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 Q + + +D Q G L LT EFRLL+ L + PG VFSREQLLN Sbjct: 126 --NQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLLN 183 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ R +TDR +D ++ LR+K+E A I +V G GY +E Sbjct: 184 AVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEP 230 >UniRef50_D2LY16 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillus RepID=D2LY16_BACS4 Length = 228 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 125/223 (56%), Gaps = 6/223 (2%) Query: 15 IVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLCR 74 +VED + L+ YLR Y G++ Q P ++LDLMLP G +CR Sbjct: 9 VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFLQYSPCAVILDLMLPKLSGEEVCR 68 Query: 75 EIR--RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 IR + ++I I+M+TAKI ++ GL IGADDY+ KP+SP E++ARV+ +LRR Sbjct: 69 WIRSQKRNEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRRSG--- 125 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 + Q+ + + LII + GK ++LT EF LL P V SREQL+ ++ Sbjct: 126 QFCQKISLNGLIIQPRKGVVLLNGKPVNLTKYEFNLLFYFMENPNIVLSREQLIQQIHPH 185 Query: 193 -YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + DRTID+HIK LR K+E + ++ I+ V G+GYR+ Sbjct: 186 TDVDILDRTIDAHIKKLREKIEDVPSKPKKIQTVRGMGYRFVV 228 >UniRef50_B5ZZQ5 Two component transcriptional regulator, winged helix family n=12 Tax=Alphaproteobacteria RepID=B5ZZQ5_RHILW Length = 234 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 91/232 (39%), Positives = 140/232 (60%), Gaps = 4/232 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 PRIL+V+DEP + ++ L A T + +G + + R+ DLI+LD+ +P DG Sbjct: 2 APRILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L +CR+IR+ S +PI+ ++A+ EEID++LGLEIG DDY+ KP+SPRE+VARVK IL+R Sbjct: 62 LDVCRQIRKTSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKRSG 121 Query: 130 PQRELQQQDA---ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + E +++ A L +D + + +T EF +L L P VFSRE+L+ Sbjct: 122 NEAEPERRRAIFVAGELSLDRQGRTVMFGDSAISMTVLEFAILDALLSRPDMVFSRERLM 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 Y V DRTIDSHI+N+R K + + I V+G+G++ +++ R Sbjct: 182 EAAYGAGTYVADRTIDSHIRNIRAKFLAAGGQG-IIATVHGIGFKLGSESGR 232 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 126/223 (56%), Gaps = 2/223 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+VED+ L Q+L L + Y TL G L R+ LI+LDLMLP GL + Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 73 CREIRRFSDI-PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 C+ +R + + PI+M+TA+ + D++ GL +GADDY+ KP++ E++AR++ +LRR Q Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTH-Q 123 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + Q + L ID R + LDL+ EF++L+ L G+ RE++ ++ Sbjct: 124 SKPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWG 183 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 VT+RTID HI LR KLE E +I V+G GYR+ Sbjct: 184 YDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVV 226 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 3/224 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +IL++ED+PK+ +LL L+ + G + L + D+ILLD+MLP G+ Sbjct: 3 EKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGM 62 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C+ IR S +PI+M+TAK E D+++G + GADDY+ KP+S E++AR+K +LRR K Sbjct: 63 EVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 131 QRELQQQDAESPLIIDEGRFQASWR--GKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + L I+ ++ ++ L+ EF LL L G V SR+++L Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ + D +D +IK LR K+ E+ FI+ V G+G+ + Sbjct: 183 VWGFDYIGNDNILDLYIKYLRDKI-DRPYERKFIQTVRGIGFIF 225 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 137/226 (60%), Gaps = 2/226 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L+ +D+ +L L+ +Y Y +G + L + PD+++LD+M+P DG Sbjct: 3 KLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 ++IR S +P++M+TAK ++IDR+LGLE+GADDY+ KP++PRE++AR+K ILRR + Sbjct: 63 TLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQE 122 Query: 132 RE--LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 RE S +++ G++++LT +E+ LL+ + PG+V ++++L Sbjct: 123 REDDPTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQELSEKA 182 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + DR++D HI NLR+K+ +L+ I+ V GVGY + ++ Sbjct: 183 LGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVSN 228 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 2/226 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +ILIV+DE + + DY Y S+G + + Y + D+ILLD+M+P DG Sbjct: 3 EKILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD-IDIILLDIMMPNIDGF 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C++IR PI+ ++A+ EID++ GL +G DDYI KP+S +E+ ARV+ LRR K Sbjct: 62 QVCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 131 QR-ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + + + L +D + + + + T EF +++ L+ P +VFS+EQ+ + Sbjct: 122 IPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + T+ HIK +R K +A + I V+GVGYRWE + Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEIN 227 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 138/245 (56%), Gaps = 20/245 (8%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTP--PDLILLDLMLPGTDG 69 +IL+VED + +++ + + ++ G++ + P D+I LDL LPG DG Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 70 LTLCREIRRFSDI-PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + + ++IR S + PI+M+TA+ E D++LGLE+GADDY+ KP+SP ++AR+K + RR Sbjct: 62 MQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 121 Query: 129 KPQRELQQQDAESPLIIDEG--------------RFQASWRGKML-DLTPAEFRLLKTLS 173 + E + +D +A + + DLTP EF LLKTL+ Sbjct: 122 ELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLA 181 Query: 174 HEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 P +VFSREQLL ++D +RT+D+HIK LR+K+E + I+ V+GVGY+++ Sbjct: 182 KNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEVG--PQVIQTVWGVGYKFD 239 Query: 234 ADACR 238 A Sbjct: 240 DSAVN 244 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 2/224 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+V+D+ L ++ L + Y G + L + + PDL++LD+M+P G Sbjct: 2 KEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 + ++IR SD+P++++TAK + +D+++GLE+GADDYI KP+ +E++AR+K ILRR Sbjct: 62 FEVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRRLG 121 Query: 130 PQRELQQQDA--ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + ++ PL +D + + G+ LDLTP EF++L L PG+ F+R Q+ Sbjct: 122 RREGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRAQISE 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 + + R ID HI LR K+E + I+ V VGYR Sbjct: 182 AVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_C6PCT6 Two component transcriptional regulator, winged helix family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PCT6_CLOTS Length = 224 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 78/222 (35%), Positives = 136/222 (61%), Gaps = 2/222 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 I I++D+ + L++ Y+ Y + + VL + PD+++LD+M+PG DG L Sbjct: 5 IYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAEDVLENFNKDKPDMLILDIMMPGMDGYEL 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C+EIR+ SD+PI++V+A+ E++D++LGLE+G+DDYI KP+SPRE++AR+K++ RR K + Sbjct: 65 CKEIRKISDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVKMPK 124 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 + ++I + + G+ + T EF L++ L+ K F+REQLL ++ Sbjct: 125 R-SNEIRIKDIVIVPDERKVLYNGEEMSFTSMEFELIQFLAKNANKAFTREQLLEKVWKY 183 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 R +D +K +R+KL+S E + I ++G GY+ E+ Sbjct: 184 DSFTETRAVDDMVKRVRKKLQSYGCEFN-ISTIWGYGYKVES 224 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 81/239 (33%), Positives = 128/239 (53%), Gaps = 10/239 (4%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQ--TPPDLILLDLML 64 + T +L++ED+P L +L+ +YL Y + L + DL++LDLML Sbjct: 5 NSGTKTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLML 64 Query: 65 PGTDGLTLCREIRRFSD-----IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVA 119 P DG+ +C+ IR+ D I+M+TAK + DR+LGLE+GADDY+ KP+ PRE++A Sbjct: 65 PDMDGMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLA 124 Query: 120 RVKTILRRCK--PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 R++ ++RR ++ + L + + + + + LT +F+LL + G Sbjct: 125 RIRAVMRRHDLPLHQQKEDNLVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSG 184 Query: 178 KVFSREQLLNHLYDDYRVVT-DRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 KV SREQL + + +D DR ID HI LR +E + I V GVGY++ D Sbjct: 185 KVLSREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 243 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + P IL+VEDE KL Q + L+ Y T+++ G L R++ PDLILLD MLPG Sbjct: 1 MSNPCILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGI 60 Query: 68 DGLTLCREIRRF-SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 GL +C+ +R+ S +PI+++TAK + DR+ GL+ GADDYI KP++ E++ARV+ LR Sbjct: 61 SGLDICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLR 120 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R E L ++ + ++++LT EF LL+ L P +V SR+Q+L Sbjct: 121 RNH--EEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQIL 178 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ + I+ +++ LR KLE+ + E+ I+ V GVGY Sbjct: 179 ERVWGYDFMGDSNIIEVYVRYLRLKLEA-EQEKRLIQTVRGVGYVLR 224 >UniRef50_C7I0A5 Two component transcriptional regulator PhoB, winged helix family n=1 Tax=Thiomonas intermedia K12 RepID=C7I0A5_THIIN Length = 244 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 91/236 (38%), Positives = 135/236 (57%), Gaps = 10/236 (4%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + ILIVEDEP + +LL L+ A + P ++ L +R PD++L+D MLPG G Sbjct: 4 SSNILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSG 63 Query: 70 LTLCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 + L R +R R IPI+M+TA+ EE D++ GL+ GADDYI KP+SP+E++AR++ +LR Sbjct: 64 VALARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLR 123 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRG-----KMLDLTPAEFRLLKTLSHEPGKVFS 181 R PQ +Q L +D +A ++ + L P EF+LL L P +V S Sbjct: 124 RRAPQLT-AEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHS 182 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 R LL+ ++ D+ + +RT+D HIK LR L + + V G GYR+ A A Sbjct: 183 RGALLDKVWGDHVFIEERTVDVHIKRLREALSPVQC-AEMVETVRGAGYRFTAQAR 237 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 3/226 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P I +VED+ L +L+ YL+ + +I+ GD VL R+ PDL++LDLMLPG DGL Sbjct: 48 PNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGL 107 Query: 71 TLCREIRRFSDI-PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 LCR +R+ S PI+M+TA+ + D++LGLE+GADDY+ KP PR ++ARV+T+LRR Sbjct: 108 QLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 167 Query: 130 PQRELQQQDAE--SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 D L ID SWRG+ ++L+ E+ LL L+ G+V +R+++L Sbjct: 168 VNEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQ 227 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 L TDR++D I LRRK + E I+ V+G GY + Sbjct: 228 QLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFS 273 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 127/222 (57%), Gaps = 6/222 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+V+D+P + ++ + + + + PPDLI+LD+MLP GL Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 72 LCREI-RRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + +++ R++ +IP++ +TA+ ++D +LGLE+GADDYI KP++PR ++AR+K + RR + Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + + + ID + GK +L EF LLK + PGKVF+R+++L+ ++ Sbjct: 122 GPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRVW 181 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 RT+D HI LR K+ S FI+ V GVGY+ Sbjct: 182 GMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKL 218 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+VED+ + +++ D+L + +Y+ G+ + + D+ILLDLMLP + G + Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR----C 128 + IR S +P+++ TAK + D++LGL +GADDYI KP+S E++AR+K +RR Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + LII+ ++ S G L+LT EF ++K L+ G+ FS+EQL N Sbjct: 123 SSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLYNA 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ + + +++HI LR KL + ++I+ ++G+GY+ E + Sbjct: 183 IWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKMEEE 229 >UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AEE3 Length = 238 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 4/228 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 TPRIL+++DE ++ L+ YL Y + +L + + DL++LD+M+PG DG Sbjct: 10 TPRILVIDDEKEICDLIEIYLSQEGYHVEKRYNAYTLLRDLEKFKIDLVILDMMMPGVDG 69 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC- 128 + IR +IP++ V+AK + D++ GL GADDYI KP++ E+VARVK+ LRR Sbjct: 70 IQALEMIREKYNIPVIFVSAKTADQDKIEGLLKGADDYIAKPFNAMELVARVKSQLRRYQ 129 Query: 129 ---KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 KP + L+ID + S + + +T E+ +L L+ PG VFS E + Sbjct: 130 VYSKPIGVDNSIIQANDLLIDTNKKMVSVDNRPVAVTKIEYEILVLLASHPGTVFSTEDI 189 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ + + TI HI+ LR K+E I V+G+GY++E Sbjct: 190 YTKIWHEEATHANNTIMVHIRKLREKIERQPRTPRHIITVWGIGYKFE 237 >UniRef50_C7N3P1 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N3P1_SLAHD Length = 242 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 84/236 (35%), Positives = 125/236 (52%), Gaps = 2/236 (0%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M P + P+IL+V+D+ + L+ + L +A G L + P DL+L+ Sbjct: 1 MNANPNSASRPKILVVDDDQGITTLVAEVLASAGMDAAACHSGYDALDVFAKEPFDLVLI 60 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 D+M+PG DG LC +R+ +D PIV +TAK E D ++GL +GADDYI KP+ PRE+VAR Sbjct: 61 DIMMPGMDGFELCANLRQVTDAPIVFLTAKDGESDLVVGLSLGADDYIVKPFRPRELVAR 120 Query: 121 VKTILRR-CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 ++ LR E I+ +A G LDLTP EF +L L+ G+ Sbjct: 121 IRARLRTPSAGAFEPSDVVVTRDFDINRRTHEAMLHGCRLDLTPKEFAVLLHLAERAGEP 180 Query: 180 FSREQLLNHLYDDYRVVTD-RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 S L + + + T+ HI++LR+K +D+ Q+FI V+GVGYR Sbjct: 181 VSARDLYERAWGETYDASAGNTVMVHIRHLRKKCADVDSSQTFIDTVWGVGYRLHG 236 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 132/235 (56%), Gaps = 16/235 (6%) Query: 15 IVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLCR 74 +VEDEP + + LRA Y G + + PD+++LD+MLPG DGL +CR Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 75 EIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQREL 134 ++ +P++M+TA+ +E D+L+GL +GADDY+ KP+S RE+VARV ++RR + R L Sbjct: 82 RVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARAL 141 Query: 135 -----------QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + ++ L ID + + G + LTP EF LL L+ P V +RE Sbjct: 142 VGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTRE 201 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 +LL ++D RT+DSH+K LRRKL + +R V+GVGY +E + Sbjct: 202 KLLEEVWDWADASGTRTVDSHVKALRRKLGAD-----LVRTVHGVGYAFEPGGVQ 251 >UniRef50_A3ERN0 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERN0_9BACT Length = 231 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 140/225 (62%), Gaps = 7/225 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL++EDE + LL Y + T +G + L R PDLI+LDLMLPG DGL+ Sbjct: 4 KILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLDGLS 63 Query: 72 LCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + R +++ + IP+V++TAK +E DR++GLE+GADDYI KP++P+E++AR+K ILRR Sbjct: 64 VNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRRT 123 Query: 129 KPQR-ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + + ++ + + +++D R +A +LDLT EF LL L G+V R+ LL+ Sbjct: 124 EQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQMLLD 183 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ TDRT+D HI+ LR+KL Q ++ V +GY++ Sbjct: 184 LVWGADYEGTDRTVDVHIRRLRKKLGDY---QDRVQTVKQIGYKF 225 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 128/231 (55%), Gaps = 7/231 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +I+I++D+ K+ L+ YL+ + + HG + +++ PDLI+LDLMLP +G Sbjct: 2 KKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENG 61 Query: 70 LTLCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 L +C+ +R IPI+M+TAK +E+DR++GLE+GADDY+ KP++PRE++AR+ +I RR Sbjct: 62 LDICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRH 121 Query: 129 KPQRELQQQDAES------PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + + + + + K +DLT EF LLK + SR Sbjct: 122 EMELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLSR 181 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 +Q++ V DR+ID I +R+ +E + +++ +G GY +E Sbjct: 182 DQIMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVFE 232 >UniRef50_C6NVH5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVH5_9GAMM Length = 247 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 89/241 (36%), Positives = 139/241 (57%), Gaps = 5/241 (2%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M++L + + RIL+VEDE + +LL L+ + T ++ +Q ++R P LI+L Sbjct: 1 MSDLELGKTVYRILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVL 60 Query: 61 DLMLPGTDGLTLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREV 117 D MLPG G+ CR +RR +PI+++TA+ EE DR+ GLE GADDY+ KP+SPRE+ Sbjct: 61 DWMLPGESGVAWCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPREL 120 Query: 118 VARVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 ARV+ +LRR L++D + + +++ + P EFR+L+ + P Sbjct: 121 GARVQALLRRSYGGLT-PTHVRIGELLVDIKAHRVTLDDELVGMGPTEFRMLRLFATNPD 179 Query: 178 KVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 +V+SRE LL+H++ + +RT+D HI+ LRR L + + I V G GYR A Sbjct: 180 RVYSREALLDHIWGRQSFIEERTVDVHIRRLRRALAKVG-YANIIETVRGEGYRCNPLAP 238 Query: 238 R 238 R Sbjct: 239 R 239 >UniRef50_B9MF92 Two component transcriptional regulator, winged helix family n=4 Tax=Comamonadaceae RepID=B9MF92_DIAST Length = 242 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 119/235 (50%), Positives = 156/235 (66%), Gaps = 5/235 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQ-TPPDLILLDLMLPG 66 RIL+VEDE + +L+DYLR A YAP + G L + PPDL LLD+MLPG Sbjct: 2 TTPARILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLPG 61 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DGL + R+ RR +D PIV++TA++EE+DRL+GLE+GADDYICKP+SPREVVARVK +LR Sbjct: 62 IDGLEVLRQARRHTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLR 121 Query: 127 RC--KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 R Q Q + A L++DE + QA+ G ++ LTP E+ LL+TL P V SR Q Sbjct: 122 RRAPLAQAAAQAELAYGALVLDEAQLQATLHGTLVALTPREWHLLRTLLAHPRSVLSRAQ 181 Query: 185 LLNHLYDDY-RVVTDRTIDSHIKNLRRKLE-SLDAEQSFIRAVYGVGYRWEADAC 237 LL H Y D + +R +DSHIKNLRRKL + A +IR+VYGVG+ ++ A Sbjct: 182 LLQHAYPDSPQEPNERAVDSHIKNLRRKLRSADPAGHDWIRSVYGVGFAFDPPAA 236 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 136/233 (58%), Gaps = 7/233 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIV+D+ ++ +LL +YL ++ D + + + +L++LD+MLPGTDGLTL Sbjct: 35 ILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPGTDGLTL 94 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 REIR S IP++M+TA+ DR++GLE GADDY+ KP+ PRE+VAR+ T+LRR + + Sbjct: 95 SREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLRRSQGAK 154 Query: 133 ELQQQDAESPLIID-------EGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 E+ A S ++ E R S G ++ L+ AEFRLL T P ++FSR+QL Sbjct: 155 EVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRRLFSRDQL 214 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 + +R+ID + LR+KL E S I+ V G GY + + + Sbjct: 215 MEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMFNVQSVQ 267 >UniRef50_B7IXR9 DNA-binding response regulator n=167 Tax=Bacilli RepID=B7IXR9_BACC2 Length = 225 Score = 295 bits (758), Expect = 7e-79, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 131/221 (59%), Gaps = 5/221 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+DEP++ +LL YL Y + G++ + ++ +LLD+M+P DG Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C+ IR FS++PI+MVTA+ + +D + GL++GADDY+ KP+ E+ AR++ +LRR + Sbjct: 64 CKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEHK 123 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 ++Q ++ DE + AS + L LTP EF LL V SR+QL+ ++ Sbjct: 124 QIQ----YHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL 179 Query: 193 YRVVTDRTIDSHIKNLRRKL-ESLDAEQSFIRAVYGVGYRW 232 DRT+DSHI+NLR KL ++ ++ VYGVGYRW Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRW 220 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 128/232 (55%), Gaps = 5/232 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +LIV+D+ + LL ++L+ ++ G+++ + +T DLI+LD+MLPG G+ Sbjct: 81 AHVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSGI 140 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR--- 127 +C++IRR S +PI+M+TA + D++LGLEIGADDY+ KP+ PRE++AR++ +LRR Sbjct: 141 EICQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRLEN 200 Query: 128 -CKPQRELQQQDAESPLIIDEGRFQAS-WRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 P R + + +D R + + ++LT AEF LL+ + SR+QL Sbjct: 201 NRAPSRPVTHSYRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHILSRDQL 260 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 + + DR++D I LRRKL I + GY++ + Sbjct: 261 MEMAGNQAVYGYDRSVDILISRLRRKLNDDSRSPKLILTIRNGGYQFGHEVE 312 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 134/231 (58%), Gaps = 9/231 (3%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + RILI+EDE + LL L + + G L + PDL++LD MLP Sbjct: 1 MDKTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDR 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 GL +C+++ +IPI+M+TA+ + D++LGLE+GADDYI KP+ REVV R++TILRR Sbjct: 61 SGLDICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRR 120 Query: 128 CKPQRELQQQDAES-----PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + ++ A S +++ + +G+ +DLTP EF LL L G++F+R Sbjct: 121 LAQAQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTR 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 +LL ++ RT+D+HI+ LR+KL++ D I V+G+GY++E Sbjct: 181 AELLESVWGYDFPGDMRTVDTHIQRLRKKLDAAD----LITTVFGIGYKFE 227 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 133/226 (58%), Gaps = 4/226 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQ---TPPDLILLDLMLPGT 67 RIL+V+DEP + +L YL A + + + G L +R P DL+LLD+M+PG Sbjct: 2 TRILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPGM 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGL + R +R +D +++VTA+ EE+D+L+GL +GADDY+ KP+SPREV ARVK++LRR Sbjct: 62 DGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLRR 121 Query: 128 CKPQRELQQ-QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + L +D + + G + LT EF LL L PG+VFSR QLL Sbjct: 122 RRDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQLL 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ + +R +D HI+NLR +L + I V GVGY++ Sbjct: 182 EQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKF 227 >UniRef50_Q3JG93 Response regulator protein n=61 Tax=Proteobacteria RepID=Q3JG93_BURP1 Length = 288 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 143/240 (59%), Gaps = 7/240 (2%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M E+P+ R+L++ED+ +L QL+ +YL + ++ T++ GD + VR+ P L++L Sbjct: 49 MNEVPL---KYRVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVIL 105 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 DLMLP DG+ +CR IR FS++P++++TA+ + D++ GLE GADDY+ KP PR +VAR Sbjct: 106 DLMLPHLDGMEVCRRIRAFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVAR 165 Query: 121 VKTILRRCKPQRELQQQDAE----SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEP 176 + +LRR +P ++ +E L I +WRG+ +DL AEF LL L+ Sbjct: 166 ARALLRRVQPGASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAA 225 Query: 177 GKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 G V SR+ +L L DR++DS I LRR+ E +E I+ ++G GY + A Sbjct: 226 GTVLSRDDILKQLRGIEFDGIDRSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSA 285 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 294 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 7/229 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 IL+ +DE + +L YL A Y + G Q L + P D+ LLD+M+P DG Sbjct: 2 PYTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 + + +R SD+P+++V+AK ++ +++LGL +GADDY+ KP++P E VARV T +RR K Sbjct: 62 YQVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLK 121 Query: 130 PQRELQQQDAES-----PLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 Q + L +D+ + G+ ++LT E+R++ PG+VF+++Q Sbjct: 122 GMAAAQPKRPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQQ 181 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + +D+ V + ++ + LR KL E I+ + G+GYR E Sbjct: 182 IYECGWDEDYVAAENSVMVCMSRLRSKLGDDGQEA--IKTIRGLGYRLE 228 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 5/231 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYA-PTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ILIV+DE + ++ L Y + ++ +P V+ DLI+LD+M+ G G Sbjct: 6 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 C IR +SD PI +TA+ + D+L G +GADDYI KP++P E+ AR++ L+R Sbjct: 66 ACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQS 125 Query: 132 RELQ--QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 +E Q + G+ + + +LL+ P V S++Q+ + Sbjct: 126 KETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEKV 185 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW--EADACR 238 + + T+ HI+ LR K+E + +I V G+GYR+ + R Sbjct: 186 WGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPEGKR 236 >UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=A5UT44_ROSS1 Length = 261 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 83/238 (34%), Positives = 129/238 (54%), Gaps = 13/238 (5%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +P I+IVED P + + + +L+ ++ + + + +R+ P LI+LD++L +G Sbjct: 8 SPLIMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNG 67 Query: 70 LTLCREIR---------RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 LCR IR R +D+PI++++A+ +E DRL G GADDY+ KP+SP E+ R Sbjct: 68 CDLCRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFR 127 Query: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 +K+ILRR L ID R + ++LTP EF LL L+ PG+VF Sbjct: 128 IKSILRRSIGLS--IACIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVF 185 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAE--QSFIRAVYGVGYRWEADA 236 SRE+LL ++ + RT+D H+ LR KLE + I +G GY+ E+ A Sbjct: 186 SREELLERVWGYSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLESPA 243 >UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleidia extructa W1219 RepID=D2MMT6_9FIRM Length = 232 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 135/230 (58%), Gaps = 3/230 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+V+DE + + L +L + ++G + L V++ DL+L+D+M+P DG+ Sbjct: 3 RILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDGVK 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK-- 129 +EIR+ +IPI+ ++AK E D++ GL IGADDYI KP+ P EV+AR+K LRR K Sbjct: 63 ATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFKEL 122 Query: 130 -PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 Q++ Q+ + +++ + GK + LTP E+ +LK P K+ + + + Sbjct: 123 GSQQKDQEVYMLGGITLNDSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQDIYQE 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 ++ + + ++ TI HI++LR K+E + +I+ V+G GY+ E+D + Sbjct: 183 VWKEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYKAESDYEK 232 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 2/222 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +L+V+DEP++ + L T ++G + + VR+ PD++LLD+M+P DG Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR--CKP 130 R IR FS +P++++TAK EE DR+ GLE+GADDY+ KP+S RE+++R++ +LRR +P Sbjct: 69 LRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQP 128 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + L ID R + GK ++L P E+RLL L G V + E LL+ ++ Sbjct: 129 PIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKVW 188 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 + +I LR+K+E + +I GVGYR+ Sbjct: 189 GPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRF 230 >UniRef50_C4IAX3 DNA-binding response regulator n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IAX3_CLOBU Length = 234 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 6/231 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+ ED+ + ++L YL + + + +G L +++ DL LLDL++P +G Sbjct: 2 KYKILVAEDDNDIVKILKLYLDNSGFEVVYVDNGMDALKKIQEEHIDLALLDLIMPIMNG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L + IR S+IPI++ +AK E D++L L IGADDY+ KP+ P EV+AR+ + LRRC Sbjct: 62 YELTKNIREISNIPILIFSAKYEISDKILALSIGADDYLTKPFEPMEVIARINSNLRRCY 121 Query: 130 ------PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 ++ + L +D F G +++T E+++L L PG+V+S+ Sbjct: 122 ELDDRFKNQDKNFKLQVGELNLDLDNFTIEKNGLPINVTATEYKILAKLMKYPGRVYSKA 181 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 QL + +Y D T+ HI NLR K+E +I+ V G+GY+ E Sbjct: 182 QLYESINGEYCDSDDSTMMVHISNLREKIEEDPKNPKYIKTVRGIGYKIEV 232 >UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostridium RepID=A7GIT8_CLOBL Length = 230 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 2/229 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + +ILIV+D+ + + L +L Y +G++ L + DLIL+D+M+P DG Sbjct: 2 SYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKIDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 + IRR ++IPI+ +TAK + D++ G G DDYI KP+ E+ R+ IL+R Sbjct: 62 FEAIKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVS 121 Query: 130 PQ--RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 E + L ++ + LTP EF +L L+ G+VF +L Sbjct: 122 TGVVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSELYE 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 ++ + D ++ +HI+NLR KL +I+ V+GVGY+ E +A Sbjct: 182 RVWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 4/222 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RI IVEDE ++ + L L + + +G + + Q DL+LLD+MLPG DG+T Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+ +R S +PI+M+TAK E D++ GL+IGADDY+ KP++ E++AR++ LR+ P Sbjct: 66 ICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVPD 125 Query: 132 R---ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 L+++ L++ R++ G+ + LT E+ LL+ + V +R+Q+L Sbjct: 126 NGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILEK 185 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 ++ +D +I+ LR KL + +I V GVGY Sbjct: 186 VWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGY 226 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 124/220 (56%), Gaps = 5/220 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +L+VEDEP + L+ YL + L G L R+ P +LD+ LPG G + Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70 Query: 73 CREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 CR +R D P++ +TA+ +E+DR++GLE+GADDY+ KP+SPRE+VARV+ +LRR Sbjct: 71 CRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRTVGV 130 Query: 132 RE-LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 E +++ P+ +D R + G+ + LT EF LL L PG+VF+R +LL ++ Sbjct: 131 PEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELLAAVW 190 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 + RT+D H+ +R KL IR GVGY Sbjct: 191 GYAAHSSTRTVDVHVAQVRAKLGGAAG---VIRTHRGVGY 227 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 293 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 134/229 (58%), Gaps = 5/229 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +T IL+++D+ L +LL +YL Y G+ + ++ DL+LLD+M+PG Sbjct: 1 MSTHSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGI 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG + IR S +P++M+TAK EE DR+LGLE+GADDY+ KPYS RE++AR+K +LRR Sbjct: 61 DGFETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRR 120 Query: 128 CKPQRELQQQD----AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + + ++ D A + + ++ ++ G+ + +T +EF++L+ L GK +E Sbjct: 121 IELDKNQKEDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPKE 180 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L + + DR+ID H+ N+RRKL + I+ + G+GY + Sbjct: 181 DLYLEVLGREIMAYDRSIDMHVSNVRRKLGGTTEQSK-IQTIRGIGYMF 228 >UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromonadales RepID=Q47ZA2_COLP3 Length = 238 Score = 293 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 133/232 (57%), Gaps = 2/232 (0%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 + + +IL+VED+ +L L+ D+L + + GD V V+ PDLI+LD+MLPG Sbjct: 5 NSSVKKILLVEDDRQLSDLVTDFLTSEGFHVKQEFRGDTVAKRVKLFSPDLIILDVMLPG 64 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DG +CR++R + P++M+TAK + D++LGLEIGADDY+ KP PR ++ARV +LR Sbjct: 65 KDGFGVCRDLRPEFNGPVLMLTAKSTDFDQVLGLEIGADDYVIKPVEPRVLLARVNALLR 124 Query: 127 RCK--PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 R Q E + + L I++ + + + + +DLT EF LL L+ + G+V +R+ Sbjct: 125 RGDLPNQSEEKGEITCGGLYINKASRKVTLQDENVDLTSQEFDLLWLLAGKAGEVQNRDY 184 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 + + DR++D I LR+KL I+ ++G GY + DA Sbjct: 185 IYKAVIGREYDGLDRSVDVRISRLRKKLHDSTDTPFRIKTIWGQGYLFVPDA 236 >UniRef50_C6PQ36 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQ36_9CLOT Length = 233 Score = 293 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 131/225 (58%), Gaps = 6/225 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+V+DE + ++ L+ Y G + L V P +++LDLMLP +G Sbjct: 2 NEKILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVING 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR-- 127 +C+ + +I I+M+TAK + +D++LGLE+GADDY+ KP+ RE++AR+K+++RR Sbjct: 62 YDVCKRL-EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRRLD 120 Query: 128 -CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + L I++ + S + +L+ TP EF LL L G V+SREQ+L Sbjct: 121 KTIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSREQIL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 N +++ RT+D+HI+ +R+KL + Q I+ VYG+GY+ Sbjct: 181 NIIWNMDYAGGTRTVDTHIQRIRKKLGNN--YQDLIQTVYGIGYK 223 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 5/232 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +IL+++DE + +L+ A YA G + L + PDL+++D+M+P DG Sbjct: 2 KKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDGF 61 Query: 71 TLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 T CR +R P++ ++AK + +D+ +G + G DDY+ KP+ PRE++ ++ LRR Sbjct: 62 TTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRRAS 121 Query: 130 PQRELQQQDAE----SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + ++D G+F+ + G+ L LTP EF++ L+ PG V S+EQL Sbjct: 122 MAAAPVAPRGDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQL 181 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 + + V +I IK LR K+E ++ I+ V+G+GYR+E + Sbjct: 182 VEAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRFEPEGR 233 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 127/228 (55%), Gaps = 2/228 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 TPRIL+ ED+P L L D L+ YA GD L DLILLD+MLP G Sbjct: 2 TPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSG 61 Query: 70 LTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 +C+++R +PI+M+TA+ E +D+++GL+ GADDY+ KP+ E++AR++ +LRR Sbjct: 62 FDVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRA 121 Query: 129 KPQRELQQQDAE-SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 +R L + + +D R + + GK + L+ E+RLL L G+ +RE LL Sbjct: 122 PVRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLT 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ RT+D H+ LR+KLE +++ V G+GY+ + Sbjct: 182 QVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDE 229 >UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT63_9FIRM Length = 233 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 68/229 (29%), Positives = 127/229 (55%), Gaps = 3/229 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+ ED+ + + YL ++ G + + + DLI++DLM+P G Sbjct: 5 KILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGEE 64 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +++R S +PI++++AK E+ D+++GL IGADDYI KP++P E++ARV + LRR Sbjct: 65 AIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHSY 124 Query: 132 REL--QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 L + + ++ S K+++LT E+++L+ L P KVFS E + H+ Sbjct: 125 DNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEHV 184 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 +++ + +T+ HI+ +R K+E +I+ +G+GY++ + R Sbjct: 185 WNEP-AIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDNKRR 232 >UniRef50_A4SZ97 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=A4SZ97_POLSQ Length = 237 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 128/230 (55%), Gaps = 10/230 (4%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 T RILIVEDEP + +L+ L A Y D ++ P++I+LD MLPG G Sbjct: 2 THRILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKSG 61 Query: 70 LTLCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 + +E+R R +PI+M+TAK EE D++LGL+ GADDY+ KP+SP+E+VARV+ +LR Sbjct: 62 VQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAMLR 121 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQA-----SWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 R + E PL +D + + K + L P EFRLL+ P +V S Sbjct: 122 R-QMPIEDTGPLTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVHS 180 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 R LL+ ++ + +RT+D HIK LR L D + +I V G GYR Sbjct: 181 RASLLDKVWGSEVYIEERTVDVHIKRLRAALVPFDCD-RYIETVRGSGYR 229 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 1/226 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E +IL+VEDE L Q+++ L A ++ + Q ++ DL+LLD MLP Sbjct: 18 EGAVQILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDG 77 Query: 68 DGLTLCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DGL LC+++R +P++++TA+ E D +LGLE GADDY+ KP+S E+ AR K +LR Sbjct: 78 DGLLLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLR 137 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R +Q L ID + L LT EF LL L+ P +VFSR QLL Sbjct: 138 RHLSAAPTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLL 197 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 + ++ + T++SHI LR KL + + ++ V+GVGY++ Sbjct: 198 DAVWGYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243 >UniRef50_B6BUZ2 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BUZ2_9PROT Length = 233 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 132/231 (57%), Gaps = 5/231 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N P ILIVEDE + +++ L ++ P + + ++++ DLILLD MLPG Sbjct: 1 MNKPNILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLPGM 60 Query: 68 DGLTLCREIRRFSD---IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 DG+ + IR S+ IP++M+TAK EE +++ G ++GADDY+ KP+S +E++AR+K I Sbjct: 61 DGIDFLKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAI 120 Query: 125 LRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 LRR KP +Q L + + + K + L P EF+LL L +V SRE Sbjct: 121 LRRKKPD-FFPKQIKHGNLQVHPDSHEVFHQSKFIKLGPTEFKLLYLLCMNKNRVLSREI 179 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +++ ++++ + RTID H+K LR L+S E S I + G GY+ + Sbjct: 180 IVDKIWNNESEIDARTIDVHVKRLRSTLKSHGIENS-IETIRGAGYKLSDE 229 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 132/225 (58%), Gaps = 2/225 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+++D+ +L +L+ +L + + G L ++Q +L ++D+M+PG +G+ L Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 RE+R+ S +P++M+TA+ EE+DR+LGLE+GADDY+ KP +PRE+ AR++ +LRR Q+ Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDTQQ 122 Query: 133 ELQ--QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 E Q+ L + G+ +DLT E+ +L L G+V S+ +L Sbjct: 123 ESDDKQETRFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSKYELSQAAL 182 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 DRT+D HI +LR+K+ + D ++ I+ V VG+ + + Sbjct: 183 GKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFVPE 227 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 359 3e-98 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 357 2e-97 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 356 3e-97 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 355 1e-96 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 354 2e-96 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 351 1e-95 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 351 1e-95 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 350 2e-95 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 350 2e-95 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 349 3e-95 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 349 4e-95 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 349 5e-95 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 349 5e-95 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 348 9e-95 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 347 1e-94 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 346 4e-94 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 345 6e-94 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 345 7e-94 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 345 8e-94 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 345 1e-93 UniRef50_C4L340 Two component transcriptional regulator, winged ... 344 1e-93 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 344 2e-93 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 344 2e-93 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 344 2e-93 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 342 6e-93 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 342 6e-93 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 341 9e-93 UniRef50_B8G179 Two component transcriptional regulator, winged ... 341 1e-92 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 340 2e-92 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 339 4e-92 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 339 4e-92 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 339 4e-92 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 338 8e-92 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 338 1e-91 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 338 1e-91 UniRef50_B8G223 Two component transcriptional regulator, winged ... 337 1e-91 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 337 2e-91 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 337 2e-91 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 337 3e-91 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 336 4e-91 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 335 7e-91 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 335 7e-91 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 335 8e-91 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 335 9e-91 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 335 1e-90 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 334 1e-90 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 334 1e-90 UniRef50_D1C683 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 333 3e-90 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 333 4e-90 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 333 4e-90 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 333 4e-90 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 333 4e-90 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 332 4e-90 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 332 5e-90 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 332 5e-90 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 332 6e-90 UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Ta... 332 7e-90 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 332 9e-90 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 331 1e-89 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 331 1e-89 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 331 2e-89 UniRef50_B8I272 Two component transcriptional regulator, winged ... 331 2e-89 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 330 3e-89 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 330 3e-89 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 330 3e-89 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 329 5e-89 UniRef50_C4L703 Two component transcriptional regulator, winged ... 329 5e-89 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 329 6e-89 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 329 6e-89 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 328 1e-88 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 327 1e-88 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 327 1e-88 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 327 2e-88 UniRef50_A4J267 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_B8I014 Two component transcriptional regulator, winged ... 327 3e-88 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 326 3e-88 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 326 4e-88 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 326 4e-88 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 326 5e-88 UniRef50_A4AL32 Putative two-component system response regulator... 325 8e-88 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 325 8e-88 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 325 9e-88 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 325 9e-88 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 325 1e-87 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 325 1e-87 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 325 1e-87 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 325 1e-87 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 325 1e-87 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 325 1e-87 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 324 1e-87 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_D1C280 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 324 2e-87 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 323 2e-87 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 323 3e-87 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 323 3e-87 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 323 4e-87 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 322 5e-87 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 322 6e-87 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 322 7e-87 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 322 8e-87 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 322 8e-87 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 322 8e-87 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 322 8e-87 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 322 8e-87 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 321 1e-86 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 320 2e-86 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 320 2e-86 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 320 3e-86 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 320 3e-86 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 320 3e-86 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 320 3e-86 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 320 4e-86 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 319 4e-86 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 319 4e-86 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 319 5e-86 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 319 5e-86 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 319 5e-86 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 319 6e-86 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 318 8e-86 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 318 1e-85 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 317 1e-85 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 317 2e-85 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 317 2e-85 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 317 2e-85 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 317 3e-85 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 316 3e-85 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 316 3e-85 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 316 3e-85 UniRef50_C0WE14 Two-component system transcriptional regulator n... 316 4e-85 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 316 4e-85 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 316 4e-85 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 315 5e-85 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 315 7e-85 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 315 7e-85 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 315 7e-85 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 315 1e-84 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 315 1e-84 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 314 2e-84 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 314 2e-84 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 314 2e-84 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 314 3e-84 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 313 3e-84 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory pro... 313 4e-84 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 312 5e-84 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 312 5e-84 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 312 8e-84 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 312 8e-84 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 312 1e-83 UniRef50_Q0HYY3 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostrid... 311 1e-83 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 311 1e-83 UniRef50_A6LQJ3 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 311 2e-83 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 311 2e-83 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 311 2e-83 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 310 2e-83 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus la... 310 2e-83 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 310 2e-83 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 310 3e-83 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 310 3e-83 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 310 3e-83 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 310 3e-83 UniRef50_B2J8Q5 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 310 3e-83 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 310 4e-83 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 310 4e-83 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 309 4e-83 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 309 4e-83 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 309 5e-83 UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regu... 309 6e-83 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_B8G869 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 308 1e-82 UniRef50_A9AVR8 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 308 1e-82 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 308 1e-82 UniRef50_UPI0001C164FC Two component Transcriptional regulator, ... 308 1e-82 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 308 1e-82 UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostrid... 308 1e-82 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 308 1e-82 UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax... 307 2e-82 UniRef50_C6D0Z2 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 307 2e-82 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleid... 307 2e-82 UniRef50_D1BL25 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C7N3P1 Response regulator with CheY-like receiver domai... 307 3e-82 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 307 3e-82 UniRef50_C6PQ36 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_C7LZ74 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_A5UT44 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_A9AXY0 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT 306 4e-82 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 306 5e-82 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_C6PZ92 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_C9XJX9 Two-component system response regulator n=108 Ta... 305 6e-82 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 305 6e-82 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 305 7e-82 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 305 7e-82 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 305 7e-82 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 305 7e-82 UniRef50_B3E8G4 Two component transcriptional regulator, winged ... 305 7e-82 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_A3ERN0 Putative two component transcriptional regulator... 305 9e-82 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 305 9e-82 UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanob... 305 9e-82 UniRef50_C6VZ09 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_C4RGF6 Two-component system response regulator receiver... 305 1e-81 Sequences not found previously or not previously below threshold: >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 359 bits (924), Expect = 3e-98, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 123/232 (53%), Gaps = 3/232 (1%) Query: 5 PIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML 64 + +IL+VED+ L +LL L Y G + L R P L++LD+ML Sbjct: 24 TLAMPEHKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVML 83 Query: 65 PGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 PG DG LCR IR S +PI+M+TA+ E D++ GLE GADDY+ KP+ RE++AR+K + Sbjct: 84 PGIDGFELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKAL 143 Query: 125 LRRCKPQRELQQQ---DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 LRR + Q + L I R G LD +P EF L + +VFS Sbjct: 144 LRRSQTQNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFS 203 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 REQLL ++ RT+D HI LR+K+E+ + + V G GY++E Sbjct: 204 REQLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFE 255 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 357 bits (917), Expect = 2e-97, Method: Composition-based stats. Identities = 100/237 (42%), Positives = 139/237 (58%), Gaps = 1/237 (0%) Query: 4 LPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLM 63 + T RIL+VEDE + + YL +Y T + G L + DL++LDLM Sbjct: 2 NNTNSETRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLM 61 Query: 64 LPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKT 123 LP G +CR IR SD+PI+M+TAK E DR++GLE+GADDY+ KP+SPRE+VARV+ Sbjct: 62 LPRVPGERVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRA 121 Query: 124 ILRRCKPQRELQ-QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 +LRR E Q + L ID + GK +DLT +EF+LL TLS PG+V+SR Sbjct: 122 LLRRVHADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSR 181 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRI 239 +L+ + +RTIDSH+KNLR K+ ++ V+GVGYR+E + Sbjct: 182 MELVEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTKQP 238 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 356 bits (916), Expect = 3e-97, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 138/229 (60%), Gaps = 4/229 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + E + +IL+V+DE ++ LL+ L+ +Y T S+G + L +++ L+LLD+M+P Sbjct: 1 MPEQSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DGLT C IR FS++PI+M+TA+ +E+DR+ GL+IGADDYI KP+SPRE++AR++ L Sbjct: 61 EMDGLTACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATL 120 Query: 126 RRCKP-QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 RR + L +D GK + LT EF LL KVFSREQ Sbjct: 121 RRSHRFTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQ 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 LL+ ++ + RT+D+HIK LR KL I+ V+G+GY++E Sbjct: 181 LLDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKFE 226 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 134/237 (56%), Gaps = 7/237 (2%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 + +IL+V+D+P + +L+ L Y ++ L V D+ ++D+MLPG Sbjct: 24 NMAKKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPG 83 Query: 67 TDGLTLCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKT 123 DG L R++R ++ + P+V ++AK EE D++LGLE+GADDYI KP+S RE++AR+K Sbjct: 84 MDGFELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKA 143 Query: 124 ILRR----CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 + RR + + E ++ L ID R++ + + LTP EF LL+ L+ GKV Sbjct: 144 VFRRIQLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKV 203 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 FSR+ LL+ L+ RT+D HI+ LR K+E + +I V G GY++ Sbjct: 204 FSRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPG 260 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 354 bits (909), Expect = 2e-96, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 134/233 (57%), Gaps = 5/233 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 R+LI +DE ++ LL YL Y G++ L +L++LDLM+P Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+ +CR +R ++IPI+M+TAK +E+D+++GL IGADDYI KP+S EV+AR+K ++RR Sbjct: 61 DGIEVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRR 120 Query: 128 -----CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + + L ID ++ + K + LT E LLK + P +VF++ Sbjct: 121 FLVLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTK 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 QL +++D + D T+ HI+ LR+K+E+ + FI+ V+G+GY++ + Sbjct: 181 TQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGE 233 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 351 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 91/228 (39%), Positives = 142/228 (62%), Gaps = 2/228 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 P IL+V+DEP L + L L + T S G + L R DLI+LDLMLPG DG Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 LT+CRE+R PI+M+TAK ++ID++LGLE+GADDYI KP++ RE++AR++ +LRR + Sbjct: 61 LTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 130 PQRELQQ--QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + L++ + +A G+ L+LT E+ LL+ L+ PG V++R++LL+ Sbjct: 121 AASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLD 180 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ +RT+D H++ +R KLE + ++R +GVGY EA+ Sbjct: 181 LVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 351 bits (902), Expect = 1e-95, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 135/224 (60%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+VED+ + L L Y + G + L + PDL+LLD+MLP DG Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C+EIR+ S++PI+M+TAK EE+D++LGL++GADDYI KP+ +E++AR++ +LRR + Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 Q+ P +D + +GK ++L+ EF +LK L PG+V++R+ ++ H+ Sbjct: 121 SDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHI 180 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + + R +D +I+ LR K+E + +I V +GY+++ Sbjct: 181 WGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQ 224 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 350 bits (900), Expect = 2e-95, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 137/228 (60%), Gaps = 1/228 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 RIL V+D+PK+ ++L L + S G++ L RQ+ PDL++LDLM+PG DG Sbjct: 2 PQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC- 128 ++++ ++PI++++A+ EE+DR++G +G DDY KP+SP E+ RVK +LRR Sbjct: 62 FETYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLG 121 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 +P+ L+ L +D + + ++LTP +F LL ++ P +VF++ LL+ Sbjct: 122 EPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDK 181 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 ++D D T+ HI+ LR K+E+ + +I+ V+G+GY++E + Sbjct: 182 IWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFEYEG 229 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 350 bits (900), Expect = 2e-95, Method: Composition-based stats. Identities = 93/228 (40%), Positives = 139/228 (60%), Gaps = 1/228 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIV+DEPK+ ++ YL Y +G + L + PDLI+LD M+P G+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK-P 130 + REIR+ S IPI+M+TAK EE+D+L+G E G DDY+ KP+S RE+ AR+KTIL+R + Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEAK 123 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + E L + + + +GK LDLTP EF+LL+ PGK +SR +LL + Sbjct: 124 TINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYAI 183 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 + +RTID+HI NLR+K+E A +I+ V+G+GY+ + + Sbjct: 184 GEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRGEK 231 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 349 bits (898), Expect = 3e-95, Method: Composition-based stats. Identities = 87/227 (38%), Positives = 138/227 (60%), Gaps = 3/227 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +LIV+DE + L+ YL A+++ +G++ L ++ D+IL+D+M+P Sbjct: 1 MEKKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKM 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG TLC IR SD+PI+ +TA+ +E D++ GL++G DDYI KP+SP E++AR++ I+RR Sbjct: 61 DGFTLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRR 120 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 ++ + + PL+IDE + + G + LT EF LL L+ G+VFSRE LL Sbjct: 121 AYHNKQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLA 180 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ RT+D+HIK LR KL+ FI+ V+G+GY++E Sbjct: 181 QVWGYDYTGNARTVDTHIKTLRMKLKQAS---DFIQTVWGIGYKFEV 224 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 349 bits (898), Expect = 4e-95, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 127/234 (54%), Gaps = 5/234 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +ILIVEDE + ++ YL Y +G + PDLI+LDLM+P DG Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR-- 127 LC EIR+ S++PI+M+TAK EE DR+LGL +GADDY+ KP+SPRE+V RV+ ILRR Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 128 ---CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + + L + L I ++LT EF +L ++ P +VFSR Q Sbjct: 121 QVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQ 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 LL ++D T+ + LR KLE + +I V+G+GYR+E + Sbjct: 181 LLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNGRN 234 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 349 bits (897), Expect = 5e-95, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 146/227 (64%), Gaps = 3/227 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L+V+D+ K+ ++L YL Y+ G + + RQ PD++LLD+MLP DG Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+EIRR SD+PI+M+TA+ +E DR++GLE+GADDY+ KP+SP+EV+AR++ I RR +P Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121 Query: 132 RE---LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 ++ ++D+ + G ++LTP E++LL+ PG+VFSR QL+ Sbjct: 122 SRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIEK 181 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + D +RT+DSHIKNLR+KL + E +I+ +YGVGY+ + Sbjct: 182 VQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGE 228 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 349 bits (897), Expect = 5e-95, Method: Composition-based stats. Identities = 97/238 (40%), Positives = 140/238 (58%), Gaps = 15/238 (6%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+V+DE + +LL L+ + Y + + G L + DL+LLD+MLP DGL + Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLEV 60 Query: 73 CREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC- 128 CR+++ + S IPI+M+TAK EEIDR+LGLE+GADDY+ KP+S RE++ARVK +LRR Sbjct: 61 CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRSA 120 Query: 129 ------KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + +E ++ L +D +QA K + LTP E+ LLK L PG+ FSR Sbjct: 121 SVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFSR 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV 240 ++LL ++ RT+D HI++LR KL+ I V GVGYR+ A R Sbjct: 181 DELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF---ARRPA 235 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 348 bits (895), Expect = 9e-95, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 129/231 (55%), Gaps = 5/231 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N I++V+DE ++ L+ YL Y +G + L + + DLI+LD+M+P Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+ C +IR ++PI+M++AK E++D++ GL GADDY+ KP++P E++ARVK+ LRR Sbjct: 61 DGIEACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRR 120 Query: 128 CKPQREL-----QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 K L I+ + K + LTP EF +L+ L+ G VFS Sbjct: 121 YKKFNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSI 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 E++ ++ + +D T+ HI+ LR K+E + +++ V+GVGY+ E Sbjct: 181 EKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVE 231 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 347 bits (893), Expect = 1e-94, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 144/237 (60%), Gaps = 11/237 (4%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +ILIV+D+ + +L+ YL + ++ G++ + R+ P+LILLDLMLPG Sbjct: 2 ATKQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGI 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG +CRE+R+ S IPI+M++AK E D++LGLE+GADDY+ KP+ +E+VARVK +LRR Sbjct: 62 DGYEVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRR 121 Query: 128 CKPQRELQQQ---------DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGK 178 P + +Q + LII++ + ++ G +++ P E L L+ P + Sbjct: 122 VVPSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQ 181 Query: 179 VFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 VF+REQLL+H++ + RT+D HIK LR K++ + + V+G+GY++E Sbjct: 182 VFTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKFEVK 236 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 346 bits (889), Expect = 4e-94, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 136/231 (58%), Gaps = 3/231 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 ++LIV+D+ L ++ L ++ + G YV + + ++LD+MLP Sbjct: 1 MPDQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEM 60 Query: 68 DGLTLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 DG +C +IR S +PI+M+TAK+EE D+++GL++GADDY+ KP+SPRE+VARV+ + Sbjct: 61 DGWEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRAL 120 Query: 125 LRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 +RR + ++ + + L +D ++ + +DL P EF LL L P +VF+RE+ Sbjct: 121 IRRDQDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREE 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +L ++ RT+D H+K +R+KLE S I+ V+GVGY++E Sbjct: 181 ILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVK 231 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 345 bits (887), Expect = 6e-94, Method: Composition-based stats. Identities = 89/233 (38%), Positives = 135/233 (57%), Gaps = 5/233 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +ILIV+DEP++ +L+ ++L+ A Y G L + DL++LD+M+P Sbjct: 70 PQMAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFM 129 Query: 68 DGLTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DG+T RE+R + P++++TA+ EE D+L GLE GADDY+ KP+SPRE+VARVK +L Sbjct: 130 DGMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLN 189 Query: 127 RCKPQRELQQ-QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 R P+ E L ID G+ + LTP EF LL L+ G SRE++ Sbjct: 190 RTMPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKI 249 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 L +++ DRT+D+H+K LR L + +I V+G+GY+++ DA R Sbjct: 250 LQKVWNYDYFGEDRTVDTHVKMLR---GHLGKCRGYIATVWGIGYKFDPDAAR 299 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 345 bits (887), Expect = 7e-94, Method: Composition-based stats. Identities = 97/237 (40%), Positives = 135/237 (56%), Gaps = 7/237 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N +IL+V+DE ++ +LL YL +YA +GD+ + + DLILLDLM+PGT Sbjct: 4 TNETKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGT 63 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+ +CR+IR PI+M+TAK EE +R+ G E G DDYI KP+SPREVV RVK +LRR Sbjct: 64 DGIEVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123 Query: 128 CKPQR------ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 + S L ID + + G + LTP E+ LL L+ P KV+ Sbjct: 124 ASQTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYD 183 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESL-DAEQSFIRAVYGVGYRWEADAC 237 RE+LL ++ RT+D+H+K LR KL + I V+GVGY++E A Sbjct: 184 REKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 345 bits (886), Expect = 8e-94, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 136/234 (58%), Gaps = 1/234 (0%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + E ++L+VEDE + + + L A Y G+ L + + PDL++LDLMLP Sbjct: 1 MREKKVKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLP 60 Query: 66 GTDGLTLCREIRRFSDIP-IVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 G DGL +C+ IR P I+++TAK ++ D+++GLE+GADDY+ KP++P E++AR+K + Sbjct: 61 GIDGLEVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAM 120 Query: 125 LRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 LRR + L +D + + ++LTP E+ LLK PGK RE+ Sbjct: 121 LRRRDRYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREE 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 +LN ++ + +T+D HI+ LR K+E ++ +I+ ++G GYRW+ + R Sbjct: 181 MLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPEMVR 234 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 129/240 (53%), Gaps = 11/240 (4%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +IL+V+DEP + LL L+ A Y + G L ILLDLMLP Sbjct: 1 MTMDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKL 60 Query: 68 DGLTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DG+ + +++R+ PI++VTAK +E D++ GLE+GADDYI KP+SPREV+AR+K ++R Sbjct: 61 DGMEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIR 120 Query: 127 RCKPQR----------ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEP 176 R P + L ID+ +++ + GK + LTP EF LL Sbjct: 121 RTTPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVERE 180 Query: 177 GKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 G+V SR+ +LNH++ R +D HI +LR K+E+ + IR V G GY + D Sbjct: 181 GRVLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGDG 240 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 344 bits (885), Expect = 1e-93, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 141/232 (60%), Gaps = 4/232 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + E+ RIL+ +DE ++ LL+ L Y S+G + + +++ L+LLD+M+P Sbjct: 1 MSESMFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DGLT C IR FS++PI+++TA+ EE+DR+ GL+IGADDYI KP+SPRE++AR++ L Sbjct: 61 ELDGLTACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATL 120 Query: 126 RRCKP-QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 RR +E + L ID S +GK ++LT EF LL KVFSREQ Sbjct: 121 RRTHSFSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQ 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 LL+ ++ RT+D+HIK LR KL +I+ V+G+GY++EA+ Sbjct: 181 LLDQIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 133/226 (58%), Gaps = 3/226 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+L+V+DE + + L L G++ L YVR D+ILLD+MLP DGL+ Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK-- 129 +C++IR FS++PI+M+TAK +++D++LGL+ GADDYI KP++ EV AR+K ILRR Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSI 132 Query: 130 -PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + + + ID K ++LT EF LL+ L+ PGKV+SR+ LL Sbjct: 133 TQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLKA 192 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ RT+D H++ LR K+E+ +E ++ +GVGY + Sbjct: 193 VWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 344 bits (883), Expect = 2e-93, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++++V+DE + +L L+ Y G+ + + + PD++LLD+MLPG DG+ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CRE+R+ ++PI+M+TAK EID++LGLE+GADDY+ KP+S RE++ARVK LRR Q Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123 Query: 132 RELQ-----QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + ++I + RG+ ++LT EF L LS G+V +RE LL Sbjct: 124 PAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 ++ RT+D I+ LR K+E + +I GVGY Sbjct: 184 QTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 344 bits (883), Expect = 2e-93, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 129/229 (56%), Gaps = 6/229 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 RIL++ED + L+ L Y T S G + L DLI+LD+MLP DG Sbjct: 2 QKRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDG 61 Query: 70 LTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 L +C+ +R + PI+M+TAK E DR++GLE GADDY+ KP+S RE+ ARVK LRR Sbjct: 62 LQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRT 121 Query: 129 -----KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + + L ID+ + + + K + LT EF LL ++ PG+VFSRE Sbjct: 122 DMSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSRE 181 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +LL+ ++ + T++SHI LR KLE+ + ++ V+GVGY++ Sbjct: 182 KLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 342 bits (879), Expect = 6e-93, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 134/226 (59%), Gaps = 3/226 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++L+V+D+ + +L+ Y + + GD VL + PD+++LD+MLPG DGL+ Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LCR +R IPI+M+TAK EE DR+LGLE+GADDY+ KP+SPRE+VAR+K +LRR + Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 132 RELQQ-QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Q L I + ++TP EF LL L+ P +VF+RE+LL ++ Sbjct: 126 DPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVW 185 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 RT+D HI+ LR KL SL +++ V+GVGY++ Sbjct: 186 GYDYFGDQRTVDVHIRRLRTKLASLP--HEYLQTVWGVGYKFTPPV 229 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 342 bits (879), Expect = 6e-93, Method: Composition-based stats. Identities = 92/256 (35%), Positives = 136/256 (53%), Gaps = 24/256 (9%) Query: 1 MTELPIDENTP-------------RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVL 47 MT P+DE+ RIL+VEDE + ++ L+ + + + G L Sbjct: 1 MTSNPLDESMESLTVVPPAASPASRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTAL 60 Query: 48 PYVRQ---------TPPDLILLDLMLPGTDGLTLCREIRRFS-DIPIVMVTAKIEEIDRL 97 Y R PDL++LDLMLP +GL CR +RR +PI+M++AK E DR+ Sbjct: 61 NYFRSDSPEAGSVTENPDLVVLDLMLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRV 120 Query: 98 LGLEIGADDYICKPYSPREVVARVKTILRRCKPQR-ELQQQDAESPLIIDEGRFQASWRG 156 +GLEIGADDY+ KP+ RE+VAR + +LRR + Q E L + + Sbjct: 121 VGLEIGADDYLTKPFGTRELVARCRALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDD 180 Query: 157 KMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLD 216 + L L+P EFRLL+ P +V+SR+QLL ++ + +TID HI+ LR K+E+ Sbjct: 181 RELTLSPKEFRLLELFMRHPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANP 240 Query: 217 AEQSFIRAVYGVGYRW 232 + S++ V G GYR Sbjct: 241 SNPSYLLTVRGFGYRL 256 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 341 bits (877), Expect = 9e-93, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 131/228 (57%), Gaps = 6/228 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL++ED + + + + + G + + DLI+LD+MLP DG+T Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR+IR S +PI+M+TAK E D+++G E+GADDY+ KP+SP +VAR+K ++RR K Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 132 REL---QQQDAESPLIIDEGRFQASWRGKMLD-LTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + I++ + G+ ++ LTP EF LL L P +VFSREQLL Sbjct: 122 GKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLLE 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ +RT+D HIK LR+KL S D + V+GVGY+++ D Sbjct: 182 QVWGYQFYGDERTVDVHIKRLRKKLASEDKPFLY--TVWGVGYKFDED 227 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 341 bits (876), Expect = 1e-92, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 132/232 (56%), Gaps = 7/232 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+VED+ + +L+ L Y + G++ L + + PDL+LLD+MLP DGL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 72 LCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 +C++IR ++IP++M++A+ E DR++GLE+GADDYI KP+SPRE++AR+K LR Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 129 KPQRELQQ-QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + L I + + +G+ + LT EF LL P +VFSRE LL Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRI 239 ++ RT+D HI NLR KL+S+ I +V GVGYR + R Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVSP---IIESVRGVGYRLAVNYSRP 231 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 340 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 88/236 (37%), Positives = 143/236 (60%), Gaps = 7/236 (2%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + +T ++L+ +D+P + +++ Y + G + L + + PD+++LD+M+P Sbjct: 28 LAMSTMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMP 87 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DG CREIR+ D PI+M+TAK EE DR+LGLE+GADDY+ KP+SPRE+VAR++ I+ Sbjct: 88 QLDGFEACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIM 147 Query: 126 RRCKPQRELQQQ-----DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 RR +P+ +++ + L ID + + G+ + P EF LL L PG V+ Sbjct: 148 RRLQPKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVW 207 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 SREQLL ++ RTID HIK +R++L+ L + I+ V+G+GY++ D+ Sbjct: 208 SREQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD--CIQTVWGIGYKFGVDS 261 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 339 bits (872), Expect = 4e-92, Method: Composition-based stats. Identities = 87/221 (39%), Positives = 132/221 (59%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 IL+V+DEP L +L YL + G + L R PDL++LDLM+P G Sbjct: 3 TILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 R + S P++++TAKIE+ D++LGLE+GADDY+ KP++ RE++AR++ +LRR + Sbjct: 63 FLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQT 122 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + +++D G+ +DLTP+EF +L TL PG+VFSR LL+ + Sbjct: 123 PLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVSG 182 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 D ++RTID HI+NLR K+E+ +I VYG+GYR+ Sbjct: 183 DAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRF 223 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 339 bits (872), Expect = 4e-92, Method: Composition-based stats. Identities = 91/231 (39%), Positives = 130/231 (56%), Gaps = 7/231 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIV+DE ++ +LL YL S+ S+G + + ILLDLMLP DG+ + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC---- 128 ++R PI+M+TAK EE +R+ G E GADDYI KP+SPREVV RVK +LRR Sbjct: 65 ATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTT 124 Query: 129 --KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + + L ID + + ++LTP E+ LL L+ P KVF REQLL Sbjct: 125 VEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQLL 184 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAE-QSFIRAVYGVGYRWEADA 236 ++ RT+D+H+K LR KL + +E I+ V+GVGY++E + Sbjct: 185 KEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKS 235 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 339 bits (871), Expect = 4e-92, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 9/238 (3%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + ILI ED+P + +L+ +L Y + G + + V+ DL++LD+M+P Sbjct: 1 MGMQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMP 60 Query: 66 GTDGLTLCREIRR-FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 DG + R IR +PI+ ++AK + D++ GL +GADDY+ KP++P E++ARV Sbjct: 61 HMDGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQ 120 Query: 125 LRRCKPQREL-------QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 LRR + + L ID+ + + +DLTP EF +L L+ P Sbjct: 121 LRRFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPK 180 Query: 178 KVFSREQLLNHLYDDYRV-VTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 KVFS E + ++ + T+ HI+ LR+KL Q +I+ V+GVGY ++ Sbjct: 181 KVFSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQG 238 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 338 bits (869), Expect = 8e-92, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 130/231 (56%), Gaps = 3/231 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 R+L+V+D+ + +++ YLR A + + G L TPPDL++LDLMLPG DG+ Sbjct: 56 ARVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGI 115 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + R +R +P++M+TA+ +E DR+ GLEIGADDY+ KP+SPRE+ RV+++LRR Sbjct: 116 EVFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 131 QRELQQ--QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + L++D A+ G L LT EF LL L PG+ F+R +LL H Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRI 239 ++ T+ HI+ LR K+E + V+GVGYR++ R Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDPGTPRP 285 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 85/234 (36%), Positives = 126/234 (53%), Gaps = 9/234 (3%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + N IL+V+DE + L+ YL+ + +G V +L +LD+MLP Sbjct: 1 MSMN---ILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLP 57 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DG TLC+ IR + P++M+TAK EEID++ GL +GADDYI KP+ P E+VARVK L Sbjct: 58 DIDGFTLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQL 117 Query: 126 RR-----CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 RR + + A S LI+D + + K + LTP EF +L L G+V Sbjct: 118 RRFTKYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVV 177 Query: 181 SREQLLNHLYDDYRVVTD-RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 S E+L + ++ D T+ HI++LR K+ +I+ V+GVGY+ E Sbjct: 178 SSEELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 5/232 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 ILI +DE ++ L+ +L Y + G++ + + P DL++LD+M+P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG + R+IR +PI+ ++AK + D++ GL +GADDY+ KP++P E+VARV LRR Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 128 -----CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 E + ++ID R G+ ++LTP EF +L L+ P KV++ Sbjct: 121 FLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNV 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 E + ++ D T+ HI+ LR+KL + I+ V+GVGY + Sbjct: 181 ENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFNG 232 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 337 bits (867), Expect = 1e-91, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 137/232 (59%), Gaps = 6/232 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + T ++L+V+DE + +++ L+ +Y +G+ L ++ PDL++LD+MLP Sbjct: 2 KRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLI 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG +CR IR S +PI+M++AK E ID+ +G +GADDY+ KP+SP E+ RVK +LRR Sbjct: 62 DGYEVCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRR 121 Query: 128 CKPQRE------LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 + + + ++ L I+ + RGK + LTP EF LL ++ P +VF+ Sbjct: 122 SFDKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFT 181 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 REQL H++ D V TI I+ LR K+E A+ +I+ V+G+GY++ Sbjct: 182 REQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKFS 233 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 337 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 139/231 (60%), Gaps = 8/231 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP-DLILLDLMLPGTD 68 R+LIVED+P + ++ L + G+ L + + P DL+LLD+MLPG D Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 69 GLTLCREIRR----FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 G+++CRE+R +P+VM+TA+ +E ++GLE+GADDYI KP+SPR++ +RV+ Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 125 LRRCKPQRELQQQ---DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 LRR + + + L ID R + + RG+ ++LT EF +L L+ PG+V+S Sbjct: 121 LRRQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYS 180 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 REQ+++HL+ R+ D HI++LR+K+E +I+ V G+GYR+ Sbjct: 181 REQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 113/221 (51%), Positives = 153/221 (69%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIVEDEPK+ + L YL A + + GD+ +VRQ PDL+LLD+MLPG DG+ + Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C+E+R FS IPI+M+TA++EEIDRLLGLE+GADDYICKP+SPREVVARVK +LRR + Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNTPQ 126 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 E ++ E P+I+DE + S G L LTP+EF +LK + P +VFSR +LL+ Sbjct: 127 EESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLAIGS 186 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 DRTIDSHI+NLR+K++ + I ++YG GY++ Sbjct: 187 QFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFN 227 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 84/239 (35%), Positives = 132/239 (55%), Gaps = 8/239 (3%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 MT+ + T R+L+V+DE + +LL +L + +++ G L + P D I+L Sbjct: 1 MTDRSYEM-TKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVL 59 Query: 61 DLMLPGTDGLTLCREIRRF-SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVA 119 D+MLP DG+ +C+ +R S PI+MV+AK +E D++L LE+GADDY+ KP+SPRE++A Sbjct: 60 DIMLPQLDGIEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLA 119 Query: 120 RVKTILRRCK------PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLS 173 RVK ILRR + + + S L + R + ++L LTP E+ LL L Sbjct: 120 RVKAILRRTEAEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLM 179 Query: 174 HEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 P +RE+LL ++ R +D HI LR K+E +I+ + G GY++ Sbjct: 180 KHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 336 bits (863), Expect = 4e-91, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 136/229 (59%), Gaps = 3/229 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+V+DEP + L+ L+ A Y +S G+ V ++ PDLI+LDLMLP DG Sbjct: 2 KKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDG 61 Query: 70 LTLCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + +CRE+R+ S+ +PIVM+TA + D++ GL+ GADDY+ KP+SP+E+++R++ I RR Sbjct: 62 IQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRI 121 Query: 129 K--PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + P + L + + + G+ ++LTP EF LL L GKV SR+QLL Sbjct: 122 QTLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLL 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + ++D + + R +D HI +LR K+E +I V VGY+ A Sbjct: 182 HGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAP 230 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 335 bits (861), Expect = 7e-91, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 1/226 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+ +D+PK ++L L A +A S G + L PDL++LD+M+P DG Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C IR S +PI+++TA+ + +D+++G +GADDY+ KP+ E+V RV ILRR P Sbjct: 66 VCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM-PT 124 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + L I++ + +LTP EF LL ++ PG F+RE LL ++ Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWH 184 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 T+ I+ LR K+E A+ +I+ V+G+GY+++ Sbjct: 185 GDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAGA 230 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 335 bits (861), Expect = 7e-91, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 132/233 (56%), Gaps = 3/233 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + N + L+VED+ + +L+ LRA +A + G + L P +LI+LDLMLP Sbjct: 1 MATNARQALVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLP 60 Query: 66 GTDGLTLCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVK 122 DG +CR +R PI+M+TAK EE D++LGL++GADDY+ KP+ PRE +ARV Sbjct: 61 TLDGWEICRRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVH 120 Query: 123 TILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 +LRR + L I +QA K +DLTP EF LL L+ G+ R Sbjct: 121 ALLRRTTDYNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKR 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 EQLL ++ + RTID HIK LR+K+ L+ +F++ V+GVGY+ E Sbjct: 181 EQLLEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVK 233 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 335 bits (860), Expect = 8e-91, Method: Composition-based stats. Identities = 96/234 (41%), Positives = 144/234 (61%), Gaps = 8/234 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 P ILIVED+ ++ QL+ + L + + + G+ L ++ PDLI+LDLMLP DG Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 70 LTLCREIRRF---SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 L +C IR+ D I+M+TAK EEIDR++GL GADDY+ KP+SPRE+VARV+ +LR Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 127 RC-KPQRELQQQDAESPLIIDEGRFQASW----RGKMLDLTPAEFRLLKTLSHEPGKVFS 181 R + + + Q + +D + QAS R + L+LT EF LL T PG+V++ Sbjct: 131 RQLRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWN 190 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 R QL+ L+ + +R +D+HI+ LR+K+E A +FI+ V G+GY++E Sbjct: 191 RTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDP 244 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 335 bits (860), Expect = 9e-91, Method: Composition-based stats. Identities = 95/228 (41%), Positives = 135/228 (59%), Gaps = 4/228 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 P+IL+V+DE K+ ++L +L ++ + S G + L V + PDLI+LDLMLP G Sbjct: 2 NPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C++IR+ PI+M+TAK E D++ G GADDY+ KP+S RE++AR+K ILRR Sbjct: 62 EEVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSN 121 Query: 130 PQRELQQQDAE--SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + E + L I R + G+ DLT EF +L TL PG+VF+REQL Sbjct: 122 QKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAK 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + DRTID+HIKN+R+KL + I VYGVGY++E D Sbjct: 182 KVMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKFEGD 227 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 91/233 (39%), Positives = 139/233 (59%), Gaps = 6/233 (2%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 RIL+VED+ + LL +L A +A ++ GD L DLI+LD+MLP Sbjct: 2 TTAAEKRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLP 61 Query: 66 GTDGLTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 GTDG +CR +R+ PI+MVTAK EE+D++LGLE+GADDYI KP+S REV+ARVK + Sbjct: 62 GTDGFDICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKAL 121 Query: 125 LRRCKPQREL-----QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 RR + +E ++++ + + + G+ +DLT EF LL + PG+ Sbjct: 122 FRRVEVDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRA 181 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 FSR++LL+ ++ T+++HI LR K+E +E +++ V+GVGYR+ Sbjct: 182 FSRDELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 334 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 91/230 (39%), Positives = 136/230 (59%), Gaps = 4/230 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 ++ N R+LI+EDE + ++ YL+ Y + +G + + +Q D ++LDLMLP Sbjct: 1 MEANKKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G +C+ IR S +PI+M+TAK+EE DR+ GL+IGADDY+ KP+SP+E+VARV+ I+ Sbjct: 61 DLSGEEICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIM 120 Query: 126 RRCKPQRELQQQDAE--SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 RR + L +D + + ++++LT EF+LL GKVFSR+ Sbjct: 121 RRTNNEGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRD 180 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 +L+ + V DRTID HIKNLR K+E +I VYGVGYR+ Sbjct: 181 ELVVKVLGYDYVGYDRTIDVHIKNLRHKIE--CEYYKYIVTVYGVGYRFV 228 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 334 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 92/242 (38%), Positives = 137/242 (56%), Gaps = 19/242 (7%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 RIL+VEDE + +L+ L Y ++HGD+ + DLI+LDLMLPG DG Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 70 LTLCREIRRFS--DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR- 126 L +CR+IR S IP++M+TAK +EI++++GLE+GADDY+ KP+SPRE++ARVK LR Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 127 RCK----------------PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLK 170 R K + + + PL I +++A + L LTP EF LL Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180 Query: 171 TLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 + G+V +RE+LL ++ + RT+D HI++LR+K+ + V G+GY Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 231 RW 232 R Sbjct: 241 RL 242 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 126/231 (54%), Gaps = 3/231 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E +LIV+DE + L+ D+L A YA G L + P D +LLD+M+PG Sbjct: 2 ERPTTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGP 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 G + R IR D+P++ +TA+ E+ D++ GL +GADD+I K +P EVVAR+K +LRR Sbjct: 62 SGYDVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRR 121 Query: 128 CKPQRELQQ-QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + L+ID + GK + LT EF LL+ + P +VF+REQL Sbjct: 122 YRRGEPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLF 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 L+ + T+ HI LR K+E A +I V+GVGYR++ +A Sbjct: 182 QRLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGEAR 230 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 333 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 95/223 (42%), Positives = 146/223 (65%), Gaps = 1/223 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+VEDE K+ +L +LR + L + G + L + PDLI+LDLMLPG G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 ++IR+ ++ PI+++TA+++E+D+LLGLE+GADDYI KP+SPRE+ R+K +LRR +P Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 ++ + S L I+ R +A +L LTP EF++L L+ PG+VFSR +L ++ D Sbjct: 125 QVTNV-SISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFGD 183 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +RTID+HI NLR K+E+ + I+ VYG+GY+ A+ Sbjct: 184 IYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 88/243 (36%), Positives = 138/243 (56%), Gaps = 12/243 (4%) Query: 2 TELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYV----------R 51 T + IL++EDE + + ++ L+ Y + S G + L + Sbjct: 13 TAGVLPAAVANILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPE 72 Query: 52 QTPPDLILLDLMLPGTDGLTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICK 110 Q LI+LD+MLPG +GL LCR IRR +PI+M++AK EIDR++GLEIGADDY+ K Sbjct: 73 QGEVCLIILDVMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAK 132 Query: 111 PYSPREVVARVKTILRRCKPQREL-QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLL 169 P+ RE++AR + +LRR + Q+ L + +A+ RG+ L+L+P E++LL Sbjct: 133 PFGMREMLARCRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLL 192 Query: 170 KTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVG 229 + P +V+ REQLL+ ++ V +T+D HI+ LR K+E+ + +I V G G Sbjct: 193 ELFMRHPRRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFG 252 Query: 230 YRW 232 YR+ Sbjct: 253 YRF 255 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 91/230 (39%), Positives = 136/230 (59%), Gaps = 3/230 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + T IL++ED+ ++ ++L +YL Y + G+ L P L+L+DLMLP Sbjct: 9 MKRMTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLP 68 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DG +CR++R+ S++PI++V+A+ +ID++ L +GADDYI KP+SP E+VARVK+ L Sbjct: 69 KVDGFEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHL 128 Query: 126 RRCKPQR---ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 RR E ++ + L I+ R GK L LT EF LL TL+ PG+VFS+ Sbjct: 129 RRYHRYNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSK 188 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 EQL N ++ RT+ HIKN+RRKL FI V+G+GY++ Sbjct: 189 EQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKF 238 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 127/239 (53%), Gaps = 11/239 (4%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 ++L+V+DEP + LL L+ AS+ ++G L + D++LLDLMLP G Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 70 LTLCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + + IR +D P++++TAK E D++ GLE+GADDY+ KP+SPREV+AR+ +LRR Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 129 KPQRELQQQ----------DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGK 178 + QQ + P ID +++ S + L LTP EF L++ L + Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQ 180 Query: 179 VFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 V SR+QLL ++ R +D I +LR K+E +++ + G GY + Sbjct: 181 VLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGGD 239 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 87/241 (36%), Positives = 132/241 (54%), Gaps = 15/241 (6%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 I++ +DE + + YL + + +G++ + ++ PDL++LDLM+P DGL Sbjct: 3 ANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGL 62 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C IR+ D PI+M+TA+ EE DRLLGL +GADDY+ KP+SPRE+V RV ILRR Sbjct: 63 EVCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGW 122 Query: 131 QRELQ---------------QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHE 175 + E Q L I + S ++LT EF LL L+ Sbjct: 123 RSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMY 182 Query: 176 PGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 PGKVFSR QLLN ++D T+ H++ LR K+E ++ ++I+ V+G+GY+ + Sbjct: 183 PGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKLDNK 242 Query: 236 A 236 Sbjct: 243 G 243 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 332 bits (854), Expect = 4e-90, Method: Composition-based stats. Identities = 92/224 (41%), Positives = 134/224 (59%), Gaps = 1/224 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 P IL+V+DE + + YL A Y + G + L PDLI+LDLMLPG DG Sbjct: 2 QPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 + + +R SD+ I+M+TA+ +EIDR+ GL +GADDY+ KP+SPRE+VARV+ ILRR + Sbjct: 62 MEITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRR 121 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + + + ID +A G++L+LTP EF LL L+ +V SRE L+ + Sbjct: 122 GKPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKV 181 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + TDR +D ++ +RRK+E+L E + IR GVGYR+ Sbjct: 182 WGADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRFV 224 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 332 bits (854), Expect = 5e-90, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 130/229 (56%), Gaps = 5/229 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +ILIV+DE ++ L+ YL+ + ++ ++ + DL LLD+M+P G Sbjct: 70 KEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISG 129 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L LC++IR + PI+M+TAK EID++ GL +GADDYI KP+ P EVVARVK LRR K Sbjct: 130 LELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYK 189 Query: 130 PQR----ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + ++ LI+++ + ++L LTP EF +L L + G V S E+L Sbjct: 190 RYNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAEEL 249 Query: 186 LNHLYDDYRVV-TDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ D ++ TI HI++LR K+E +I+ V+G GY+ E Sbjct: 250 FHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIE 298 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 332 bits (854), Expect = 5e-90, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 125/232 (53%), Gaps = 6/232 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 ++LI+ED+ + L+ L + G + Y D+I+LD+MLP Sbjct: 1 MLQKKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKL 60 Query: 68 DGLTLCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DGL +C+ +R+ +PI+M+T++ EE D++ L GADDYI KP+S RE+ ARV +R Sbjct: 61 DGLEVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIR 120 Query: 127 RCKPQRELQ-----QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 R +P++E + L +D + + K +++T EF LL PG+ +S Sbjct: 121 RYRPEKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYS 180 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 R +LL+ ++ + T++SHI LR K+E A+ +I V+GVGY++ Sbjct: 181 RTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFN 232 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 332 bits (853), Expect = 6e-90, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LIVEDE L L LR + T++ G L ++ D++LLDLMLPG G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR---CK 129 C+++R S +P++MVTA+ EID+++GLE+GADDY+ KPYS RE++AR++ +LRR Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 123 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 P+ +D R S G+ + L EF LL+ L G+V +R QL++ + Sbjct: 124 DAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 183 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + V +T+D H+K LR K+E A + V G+GY+ E Sbjct: 184 WGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Tax=Bacteria RepID=BAER_ECOL6 Length = 240 Score = 332 bits (852), Expect = 7e-90, Method: Composition-based stats. Identities = 240/240 (100%), Positives = 240/240 (100%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL Sbjct: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR Sbjct: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 Query: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF Sbjct: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV 240 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV Sbjct: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV 240 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 332 bits (852), Expect = 9e-90, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 127/228 (55%), Gaps = 3/228 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N IL+V+D+ + LL D+L + S+ ++ +Q+ D ++LD+M+PG Sbjct: 1 MNAKTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGE 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 +G CR IR SD+PI+ ++A+ ++D++ GL +G DDYI K SP E+VARVK +LRR Sbjct: 61 NGFAFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRR 120 Query: 128 CKPQRELQQQD-AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + L ++ + + GK + LTP E+ LL+ P VFS +QLL Sbjct: 121 SASNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 + L+ V T+ H+ LR K+E+ + +I V+G+GYR+E Sbjct: 181 DKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEG 226 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 89/230 (38%), Positives = 135/230 (58%), Gaps = 2/230 (0%) Query: 2 TELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLD 61 T + R+L+V+D+ L ++L LR Y P +S G++ + +QT PD++LLD Sbjct: 7 TAPQNGPSRGRVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLD 66 Query: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 LMLPG +GL +C++IR S +PIVM+TAK + ID + GLE GADDY+ KP+ P E+VARV Sbjct: 67 LMLPGRNGLQICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARV 126 Query: 122 KTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 + LRR + + + + ID Q + G + LTP EF LL L+ +P +VF+ Sbjct: 127 RAQLRR--GETGQAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFT 184 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 RE LL ++ R ++ H++ LR K+E + + V GVGY+ Sbjct: 185 RELLLEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 89/247 (36%), Positives = 134/247 (54%), Gaps = 8/247 (3%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M +ILIV+D+ KL +L+ DYL Y G + L ++ ++L Sbjct: 1 MNHGETISTKIQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVIL 60 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 D+M+P DG + +++R+ SDIP++M+TA EE DR++GLE+GADDY+ K +S RE++AR Sbjct: 61 DVMMPKMDGFEMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLAR 120 Query: 121 VKTILRRCK-------PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLS 173 ++ + RR + + L I A GK L+LTP E+ LL TL+ Sbjct: 121 LRAVTRRHRLSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLA 180 Query: 174 HEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW- 232 P +V SR+QLL+ + V DR++D HI +LRRKL FI+ V VGY + Sbjct: 181 KFPARVLSRDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFN 240 Query: 233 EADACRI 239 + DA Sbjct: 241 DPDAPHP 247 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 87/238 (36%), Positives = 135/238 (56%), Gaps = 10/238 (4%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +L+VEDE K+ ++L +L ++ L +RQ DL++LD+M+PG Sbjct: 2 NKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGL 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG T CR+IR FS++PI+ +TA+ EE DR+LG E+GADDY+ KP+SPRE+V RVK +LRR Sbjct: 62 DGWTTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRR 121 Query: 128 CKPQRE---------LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGK 178 ++ L + +A +G+ L L+P E+ LL L+ G+ Sbjct: 122 RSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGR 181 Query: 179 VFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLES-LDAEQSFIRAVYGVGYRWEAD 235 V SR+ LL+ ++ RT+D+H++ LR KL A S++ V G GY++E + Sbjct: 182 VLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEVN 239 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 132/238 (55%), Gaps = 1/238 (0%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYA-PTLISHGDQVLPYVRQTPPDLIL 59 M D T +ILIV+DE ++ LL L+ + + G + RQ PDLIL Sbjct: 1 MIHNIPDVYTKKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLIL 60 Query: 60 LDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVA 119 LD+MLP DG ++C +IR+F+ +PI ++AK E++D++LGL IG DDYI KP+SP+EV Sbjct: 61 LDIMLPDLDGYSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAY 120 Query: 120 RVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 ++K RR + + + + IDE + G +L LT EF +L L P ++ Sbjct: 121 KMKAFFRRNQYKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQI 180 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 FS+ +L ++ + + D + H+++LR K+E ++ +++ V G+GY+ Sbjct: 181 FSKARLYEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLNTKGD 238 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 126/235 (53%), Gaps = 5/235 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + +ILI++DE ++ L+ YL + ++G L PDLI+LD++LP T Sbjct: 1 MASEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDT 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 +GL LC+ +R+ ++ PI+ ++ K ++D++LGL +G DDYI KP+SP E+VAR+ LRR Sbjct: 61 NGLELCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRR 120 Query: 128 CKPQRELQQ-----QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + + L ID + K + LT EF +L LS P VFS Sbjct: 121 NRILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSL 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 QL +H++ + RT+ HI NLR+K+E A I + G+GY+ + A Sbjct: 181 TQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDTTAP 235 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 131/232 (56%), Gaps = 2/232 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 IL+VED+ L + L A + S G L R+T PDLI+LD+MLPG DG Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 ++CR + + + +PIV++TA +E R+ GLE+GA DY+ KP+S E++ARV+ ILR + Sbjct: 61 FSVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNE 120 Query: 130 PQRELQ--QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 QR+ P+ +D + ++ + ++L+ EF LL L H G SR+ LL Sbjct: 121 RQRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLE 180 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRI 239 ++ + ++RTID H++ LR KLE A + IR V G+GY ++ A Sbjct: 181 RVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDPATDP 232 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 330 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 89/223 (39%), Positives = 130/223 (58%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 IL+++DE KL +LL YL+ + +G + L R PDLILLD+M+P G Sbjct: 2 AQTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L R + ++ PI+++TAKIE+ D+++GLE+GADDYI KP++ REV+ARV+ +LRR Sbjct: 62 LDFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSY 121 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + ++++ + +DLTP+EF +L TL PG VFSR LL+ Sbjct: 122 KAQPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDRT 181 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +RTID HI+NLR K+E +I VYGVGYR+ Sbjct: 182 SGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRF 224 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 330 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 IL+V+D+P + + YL + + G + + PDLI+LD+ LP Sbjct: 1 MTGELILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDM 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG +CR IR + +PI+ ++ + ++ID+++G IG DDYI KP+SP +VA+VK+ +RR Sbjct: 61 DGFEVCRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRR 120 Query: 128 CK------PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 K + L ID + + GK + L EF+LL L+ G+VFS Sbjct: 121 YKELSGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFS 180 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 E L + ++ RT+ HI NLR+K+E A +I V G+GY++ Sbjct: 181 AEHLFDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNG 233 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 126/233 (54%), Gaps = 7/233 (3%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E ++LIV+DE + ++L L Y S G++ L Q PD+++LD+M+P Sbjct: 12 ETKEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKL 71 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG +C+EIR+ SD+PI+M+TA + DR+ GLE+GADDY+ KP+SP+E+ AR++ +LRR Sbjct: 72 DGYGVCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRR 131 Query: 128 CKPQR-----ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + L ID + Q + + LT EF LL+ L G+ FSR Sbjct: 132 TNKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSR 191 Query: 183 EQLLNHLYDD--YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 +L ++ R V R +D HI LR KLE+ + I G GY ++ Sbjct: 192 ADILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 127/231 (54%), Gaps = 7/231 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 ILIV+DE ++ L+ YL+ + G + L + D+ +LD+MLP DG Sbjct: 2 NENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C++IR PI+M+TAKIE+ID+++GL IGADDYI KP++P EVVARVKT LRR Sbjct: 62 FHICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYM 121 Query: 130 PQRELQQQ-------DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 +Q LII++ + S GK + LTP EF +L L GKV Sbjct: 122 RYNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPS 181 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 E+L ++ + + + T+ +HI LR K+ FI+ V+GVGY E Sbjct: 182 EELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIE 232 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 127/230 (55%), Gaps = 3/230 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N +IL+V+DE + ++ YL + G L LI+LDLMLP Sbjct: 2 NNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKM 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 G +C IR S +PI+M+TAK EE +++ G+ +GADDY+ KP+S RE+V RV+ +LRR Sbjct: 62 TGEEVCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRR 121 Query: 128 CKPQ-RELQQQDAE--SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + L +D + +G +++LT EF++L P +VFSRE+ Sbjct: 122 AYRDFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREK 181 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 L+ + DRT+DS+IKN+R+K+ES E ++I VYG+GY++ Sbjct: 182 LVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIP 231 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 131/230 (56%), Gaps = 4/230 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + IL+V+DEP + L+ L A+Y + +G + V++ D +++DLMLP DG Sbjct: 2 SKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDG 61 Query: 70 LTLCREIRRF-SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + ++IR+F IPI+M+TAK ++D++LGLE+GADDYI KP+SP+E+++R+K ILRR Sbjct: 62 IEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRT 121 Query: 129 KPQ---RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 E+ + ID R + + LTP EF+LL+ L +V SR+Q+ Sbjct: 122 DRAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQI 181 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 L ++ R +D HI +LR KLE+ I+ + G GY + + Sbjct: 182 LEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVSK 231 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 119/229 (51%), Gaps = 2/229 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASY-APTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 PRILIV+DE L L+ L + P L +LD+MLP Sbjct: 1 MEQPRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPD 60 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 +G LC+++R S+IPI+ ++AK EE+D+LLGL IG DDYI KP+SP+EV RVK LR Sbjct: 61 GEGYQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLR 120 Query: 127 RCKPQREL-QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 R + P ++E + G+ L+LT E LL P ++ S+E L Sbjct: 121 RVSMMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETL 180 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ + +D T+ HI+ LR K+E +E ++I+ V G+GYR Sbjct: 181 FTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLTV 229 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 329 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 5/233 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +ILIVED+ + ++ + L Y HG + + + ++++D+M+P Sbjct: 1 MERLKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVM 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+ R IR S +PI++++AK E+ D+++GL +GADDYI KP+S E++ARVK +RR Sbjct: 61 DGIESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRR 120 Query: 128 CKPQRE-----LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 E + + D + + GK L LT E ++LK P +VF++ Sbjct: 121 AIYYNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTK 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 Q+ + ++ + + T+ H++ LR K+E I V+G+GY+ D Sbjct: 181 VQIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGD 233 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 329 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 7/235 (2%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 ++ +IL+V+DE + ++L L Y S+G++ L R+ P L++LD+M+P Sbjct: 1 MENQKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DG +C+E+R+ SD+PI+M+TA E DR+ GLEIGADDY+ KP+SP+E+ AR++++L Sbjct: 61 KLDGYGVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVL 120 Query: 126 RRCKPQR-----ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 RR + L ID + Q + + LT EF LL+ L + G+ F Sbjct: 121 RRADKITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPF 180 Query: 181 SREQLLNHLYDD--YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 SR +L ++ R V R +D HI LR KLE + I G GY ++ Sbjct: 181 SRASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 235 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 128/224 (57%), Gaps = 2/224 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LIVEDE L L LR + T+++ G L + D++LLDLMLPG G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C+++R S +P++MVTA+ EID+++GLE+GADDY+ KPYS RE++AR++ +LRR Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDD 123 Query: 133 EL--QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 P+ +D R S G + L EF LL+ L G+V +R QL++ ++ Sbjct: 124 SEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVW 183 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 V +T+D H+K LR K+E+ A + V G+GY+ E Sbjct: 184 GADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 119/227 (52%), Gaps = 1/227 (0%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 + PRIL++ED+ ++ + L + G L D++L+DLMLP D Sbjct: 17 SVPRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDID 76 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G CR +RR SD+PI+MVTA+ + D + GLE GADDY+ KP+ +E+ AR++ +LRR Sbjct: 77 GFECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRS 136 Query: 129 KPQRELQ-QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + L I G+ L LT EFRLL L+ P +V+SREQLL Sbjct: 137 RSAGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLE 196 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ R +D H++ LR K+E A + V G+GY+ + Sbjct: 197 RVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 135/233 (57%), Gaps = 8/233 (3%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N +LIVEDE ++ + YL+ Y S+G + L + L ++D+M+P Sbjct: 1 MNFYNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKM 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+T+ ++R D P++M+TAK EE+D++LGL IGADDY+ KP++P E++ARV + LRR Sbjct: 61 DGITMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRR 120 Query: 128 C-------KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 + + L ++ + G+++ +TP EF++L+ L PG+VF Sbjct: 121 YSKYLSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVF 180 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 S E++ ++++ + TD T+ H++N+R K+E +++ V+GVGY+ E Sbjct: 181 SAEEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIE 232 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 133/228 (58%), Gaps = 2/228 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E R+L+V+D+ + ++ YL+ A YA L G+ L + PDL++LDLMLPG Sbjct: 6 EAAARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGV 65 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 GL +CR +R ++P+VM+TA EE DR++GLE GADDY+ KP+SPRE+V RV +ILRR Sbjct: 66 GGLEVCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRR 125 Query: 128 CKPQRELQ-QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + + + + L +D + + G L LT EF LL L PG+ FSR +LL Sbjct: 126 ARTSQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELL 185 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ T+ H++ LR K+E A I V+GVGYR++ Sbjct: 186 EQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDP 232 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 131/230 (56%), Gaps = 2/230 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N ILI +D+ ++ +++ L Y G+Q + PD++++D+M+P Sbjct: 1 MNNGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKL 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGL ++I+ D+PI++++AK + +D+++G ++G DDY KP+SP E+ RVK +LRR Sbjct: 61 DGLEASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRR 120 Query: 128 CK--PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 K P+++ + I+ GK + LT EF +L ++ P ++FSR QL Sbjct: 121 SKAVPEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQL 180 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 L +++ + + T+ HI+ LRRK+E A+ I+ V+GVGY++EA Sbjct: 181 LEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAP 230 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 4/228 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIVED+ ++ +L+ D L Y G + +R L++LD+MLP G Sbjct: 6 KILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYE 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK-- 129 + ++IR + P+++++AK EE D+++GL +GADDY+ KP+ E+ ARVK LRR Sbjct: 66 VLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLNF 125 Query: 130 --PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + Q + ++ ++ + LT EF +LK P KVF++ QL Sbjct: 126 SWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQLFK 185 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ + + + T+ HI+ LR K+E + S+I+ ++G+GY+ + Sbjct: 186 SIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 128/227 (56%), Gaps = 2/227 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL++ED+ + ++ +YL S+ + G+ + L+L+DLMLP DG L Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ- 131 C +IR S++PI++V+AK + D++ +GADDY+ KP+SP E+ ARVK +RR + Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + + + + ID + RG+ + LT EF LL L++ PG+VF++E+L +++ Sbjct: 123 PQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAAVWN 182 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 RT+ H+KN+R KL+ +I V+GVGY++ R Sbjct: 183 GDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIGLGNR 228 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 129/227 (56%), Gaps = 6/227 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILI++DE ++ LL D L +G + + + PDLI+LD+M+P DG Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAK-EMPDLIVLDIMMPDIDGYE 61 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP- 130 +CR+IR PIV ++AK E+DR+ G +G DDY+ KP+S +E++AR+ LRR K Sbjct: 62 VCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKRA 121 Query: 131 ----QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + + ID + +G + LT EF +L+ LS PG+VFS+EQ+ Sbjct: 122 ILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQIY 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ T+ HIKN+R K+E+LD + +I+ V+G+GY+WE Sbjct: 182 EKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWE 228 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 127/228 (55%), Gaps = 6/228 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +LI++DE ++ +L+ YL Y +G + + + +++LD+M+PG DG Sbjct: 3 NVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQ 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C +IR+ +IPI+M++AK +++D++ GL GADDY+ KP++P E++ARVK+ +RR Sbjct: 63 VCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122 Query: 132 RELQ------QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 E + I++ + + GK L LTP E+ +L L++ G VFS E + Sbjct: 123 NEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAEDI 182 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ + + T+ HI LR K+E E I V+GVGY+ E Sbjct: 183 FKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIE 230 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 94/231 (40%), Positives = 134/231 (58%), Gaps = 2/231 (0%) Query: 4 LPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLM 63 + + N +LI+EDE L ++L YL Y G L ++ PD+++LDLM Sbjct: 1 MSENTNCYTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLM 60 Query: 64 LPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKT 123 LP G + R+IR+ + PI+M+TAK E +++ GL IGADDY+ KP SPRE++AR+KT Sbjct: 61 LPNMSGEEIARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKT 120 Query: 124 ILRRCKPQRE--LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 ILRR + Q+ + ID + RG + LT EF +L TL+ P KVFS Sbjct: 121 ILRRVGKEPGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFS 180 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 RE L + +Y RTID+HIKNLRRK+E + FI+ V+G GY++ Sbjct: 181 RENLADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 2/230 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + ++LI+ED+ + +L+ Y+ A Y+ S G++ L PD I+LD+MLP Sbjct: 2 KRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKL 61 Query: 68 DGLTLCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 +G +C+ IR +PI+M+T K E D + GL IGADDYI KP+ P E++ARVKT+LR Sbjct: 62 NGWEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLR 121 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R + + +II ++ + + + P E L L+ P +V +R+QLL Sbjct: 122 RTILSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLL 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 + ++ RT+D HIK +R KL A+ S I + GVGYR+E ++ Sbjct: 182 DRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAKWS-IVTIRGVGYRFEENS 230 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 325 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 121/222 (54%), Gaps = 1/222 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R+L+VED+P + ++ YLRAA + G L + PDLI+LD MLPG DG Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR IR D+PI+++TA +R+ GLE GADDYI KP+SPRE+V RV++ILRR Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + +D G+ L LT EF LL L PG+ FSREQLL ++ Sbjct: 161 LTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVWG 220 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 T+ ++ LR K+E+ + + V+GVGYR Sbjct: 221 WEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRLN 261 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 325 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 132/226 (58%), Gaps = 4/226 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +LIVEDE ++ L+ DY + + S G++ L + DL +LD+M+P DG Sbjct: 2 NKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L +CR IR S+ PI+++TAK +E D+LLG E+GADDY+ KP+SP+ ++A+ K +LRR Sbjct: 62 LAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTG 121 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + + + L I++ + G+ L L+P E+ LL LS G SR+++L+++ Sbjct: 122 TLND-KNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNV 180 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + RT+D++IK LR KL + ++I V G GY++E Sbjct: 181 WGYDYFGDIRTVDTNIKRLREKLLD---KANYIATVRGSGYKFEVK 223 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 325 bits (834), Expect = 9e-88, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 134/240 (55%), Gaps = 5/240 (2%) Query: 1 MTELPIDENT-PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLIL 59 M ++ NT ILI++DE ++ +LL YL+ +A +G L DL++ Sbjct: 1 MRHEAMEGNTIKTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVI 60 Query: 60 LDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVA 119 D+M+P DG L ++IR S++P + ++AK +++D+++GL++GADDY+ KP++P EVV+ Sbjct: 61 ADIMMPMMDGYELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVS 120 Query: 120 RVKTILRR----CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHE 175 RV+ + RR K +++ + +++D + G+ ++T EF++L L Sbjct: 121 RVQALFRRMDVFSKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKH 180 Query: 176 PGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 G+VF++ + H++ + + I +I LR K+E + ++ + G+GYR+E Sbjct: 181 AGRVFTKASIYEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFEKK 240 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 325 bits (834), Expect = 9e-88, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 124/227 (54%), Gaps = 3/227 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASY-APTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 ++LI++DE ++ +L+ L S L Q PDL++LD+MLP +G Sbjct: 39 KVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEGY 98 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK- 129 +C++IR S +PI+ ++AK EE D+++GL IG DDYI KP+SP+EV RVK LRR Sbjct: 99 DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 158 Query: 130 -PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + + P +++ + + + ++LTP E L+ P +V S+E L Sbjct: 159 LQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETLYQA 218 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ + +D T+ HI+ LR K+E+ ++ F+ V G+GY++ Sbjct: 219 VWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFVVK 265 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 131/229 (57%), Gaps = 5/229 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + +ILIV+DE ++ L+ YL+ +Y + L + ++ DL +LD+MLPGT G Sbjct: 2 SDKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 LT+C++IR PI+M+T K E+D++ GL IGADDYI KP+ P E++ARVK LRR K Sbjct: 62 LTICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYK 121 Query: 130 P----QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + + + S L+I+ + K L LTP EF +L+ L G V S E L Sbjct: 122 KFSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELL 181 Query: 186 LNHLYDDYRVV-TDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ D ++ TI HI++LR K+ +I+ V+GVGY+ E Sbjct: 182 FHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIE 230 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 82/236 (34%), Positives = 124/236 (52%), Gaps = 2/236 (0%) Query: 3 ELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDL 62 + IL+VED+P + + + YL A + + G + + PDL++LD Sbjct: 4 SPGVTMPNAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDW 63 Query: 63 MLPGTDGLTLCREIRR-FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 MLPG DGL LC R+ P++M+TA+ EE R+ L GADDY+ KP+S +E+VARV Sbjct: 64 MLPGVDGLALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARV 123 Query: 122 KTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 + +LRR L++D Q G+ +DL EF LL L+ PG+V+S Sbjct: 124 QALLRRAYASGYRDCSPKNG-LLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYS 182 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 R++LL ++ RTID H++ LR KLE ++ V+GVGY++ Sbjct: 183 RDELLERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAGPPR 238 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 92/220 (41%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +L+V+DEP++ +L+ YL A G L VR PDL+LLD+M+P DG Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 + IR S +P++M+TA+ DR+ GL +GADDYI KP+ RE+ ARV+ +LRR Q Sbjct: 68 LQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQV 127 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 E L I A + G+ L LTP EF LL L+ PG+VFSRE+LL+ ++ Sbjct: 128 EANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWGP 187 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 RT+D+HIKNLR KL I V+GVGYR+ Sbjct: 188 DFQGDARTVDAHIKNLRDKLGE---GAGLILTVWGVGYRF 224 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 88/240 (36%), Positives = 137/240 (57%), Gaps = 8/240 (3%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M P+ ILIVED+ ++ LL +++ + ++ G L + DLILL Sbjct: 1 MDFYPMANQ---ILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILL 57 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 DL +P +G+ +CRE+R+ + PI+MVTAK EEID++LGLEIGADDYI KP+S RE+ AR Sbjct: 58 DLSIPKLNGVEVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKAR 117 Query: 121 VKTILRRCKPQRELQQ-----QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHE 175 K ++RR + + L ++ + + GK +DL+P EF LL L++ Sbjct: 118 AKAVMRRSDAANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANY 177 Query: 176 PGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 PG+ +SR +LL+ ++ + T++SHI LR K+E +I +G+GYR+ D Sbjct: 178 PGRSYSRSELLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 95/235 (40%), Positives = 130/235 (55%), Gaps = 5/235 (2%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 RILIVED+ + +L +LR Y + G + L + Q D ++LDLMLPG D Sbjct: 3 QPKRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVD 62 Query: 69 GLTLCREIRR-FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 GL +CR R PI++ +A+ E+ R+LGLE+GADDY+ KP+S E+VARVK +LRR Sbjct: 63 GLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122 Query: 128 CKPQRELQQQ----DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + + L ID +AS G LDLTP EF LL + PGKVFSR Sbjct: 123 VDALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRM 182 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 LLN ++ + T+++HI LR K+E+ AE I V+G GY+ A R Sbjct: 183 DLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQR 237 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 93/260 (35%), Positives = 140/260 (53%), Gaps = 37/260 (14%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 ILIVEDE + +L+ YL + + G L R PDLI+LDLM+PG DGL + Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 73 CREIRRFSDI---PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC- 128 C +R+ ++I I+M+TA+ EE+DR++GL GADDYI KP+SPRE+VARV+ +LRR Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 129 KPQRELQQQDAESPLIIDEGRFQAS---------------------------------WR 155 + + + + +D + AS Sbjct: 123 RGSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQLEIA 182 Query: 156 GKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESL 215 L+LTP EF LL T PG+V++R QL++ L+ + +R +D+HI LR+K+E Sbjct: 183 QIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRKKIEPD 242 Query: 216 DAEQSFIRAVYGVGYRWEAD 235 + +F++ V GVGYR+E + Sbjct: 243 PSAPTFVKTVVGVGYRFEDE 262 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 129/230 (56%), Gaps = 5/230 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +L+VEDE L LL L Y+ + G+ L +T PDL+++D MLP G Sbjct: 2 KAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSG 61 Query: 70 LTLCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 + +CR +R +++PI+M+TA+ EE DR+ GL+ GADDY+ KP+S E+ AR++ +LR Sbjct: 62 IEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLR 121 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R +P + + +D + + + L P EFRLL L PG+VFSREQLL Sbjct: 122 RIRPGL-AEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 + ++ V RT+D H+ LR+ L + E+ IR V GY ++ +A Sbjct: 181 DAVWGSDVYVEARTVDVHVGRLRKAL-NNKEERDPIRTVRSAGYAFDVNA 229 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 126/238 (52%), Gaps = 7/238 (2%) Query: 2 TELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLD 61 ++ + +ILI++DE + LL YL+ +Y + + DL +LD Sbjct: 11 MSKGVENMSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILD 70 Query: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 +MLP +G +LC+ IR+ PI+M+TAKIEE D++ GL +GADDY+ KP+ P EVVARV Sbjct: 71 IMLPDMNGFSLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARV 130 Query: 122 KTILRRCKPQREL------QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHE 175 K LRR K + + + L ++ + G+++ LTP EF +L L Sbjct: 131 KAQLRRYKKYSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSS 190 Query: 176 PGKVFSREQLLNHLYDDYRVV-TDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 G V S E+L + ++ D TI HI++LR KL +I+ ++GVGY+ Sbjct: 191 AGNVVSIEELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 142/229 (62%), Gaps = 4/229 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + +VED+ + +L+ +L A +A G+ V+P +TPP+L LLD+M+PG DG Sbjct: 2 KQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADG 61 Query: 70 LTLCREIRRFSDI---PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 L +CR+IR I P++ +TAK E D++ GL++GADDYI KP+SPRE++AR+K +LR Sbjct: 62 LEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLR 121 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R + ++ID G + RG ++ T EFRLL+ L+ PG+VF+R+QLL Sbjct: 122 RFER-PLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + ++ + VT R++D +++ +R K+E + +++ V G GYR+E Sbjct: 181 DAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEVP 229 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 95/230 (41%), Positives = 137/230 (59%), Gaps = 9/230 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVR---QTPPDLILLDLMLPGTDG 69 I++VEDE +L L+ LR + +I G L + Q PDLI+LDLMLP DG Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L +CR +R+ PI+M+TA+ E+DR+LGLE+GADDY+ KP+S RE+ ARV ILRR + Sbjct: 64 LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123 Query: 130 ------PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + + L ID + + RG+ + LT EF LL L+ PG+VFSR+ Sbjct: 124 MMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSRD 183 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 LL+ ++ + V DRT+D+HI LR+KL + I ++GVGY++E Sbjct: 184 YLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 3/227 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 ++LI+ED+ + +L YL+ SY G + + V+ P L+LLD++LPG G Sbjct: 2 KEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C++IR S+ PI+ ++ K + D++ GL+ GADDY+ KP+ E+ AR+K LRR K Sbjct: 62 YEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSK 121 Query: 130 PQ---RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 E ++ + L ID + +G + L E +LL L VFS E++ Sbjct: 122 MNANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIY 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ +T+ HI NLRRK+E ++ I+ V G GY++ Sbjct: 182 DQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFS 228 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 123/233 (52%), Gaps = 6/233 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 IL+V+DEP + LL L + + G Q L Q D I+LDLMLP DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 70 LTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + + ++IR PI+++TAK E D+++GLE+GADDY+ KP+SPRE++AR++ I RR Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 129 -----KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 +P + + L +DE A L LTP EF LL H KV SRE Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 +LLN ++ R +D + +LR K+E +++ V G GY+ E A Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDPA 233 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 323 bits (830), Expect = 2e-87, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 128/231 (55%), Gaps = 2/231 (0%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + + IL+V+DE + + LR A Y +GD L R DL +LD+M+P Sbjct: 1 MSDQPSTILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G +G LCR +R ++ P++ ++A+ E+D+++GLEIGADDY+ KP+ RE++ARV+ +L Sbjct: 61 GMNGYELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALL 120 Query: 126 RRCKPQREL--QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 RR + E + + +DE R A +DLTP EF LL L GKV SRE Sbjct: 121 RRGQMDAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASRE 180 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 LL + + +T+D+HIK LR KL + + I V G GYR+ A Sbjct: 181 DLLREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 129/230 (56%), Gaps = 4/230 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +LIVEDE + ++ DYL + ++ G + + Y++++ PD ++LDL LP Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+ +CR+IR S++ I++++A+ + D++LGL GADDY+ KP+S E+VAR+ LRR Sbjct: 61 DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 128 CKP----QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + +II++ + K + L+ EF LL L+ +VFS+ Sbjct: 121 QDRWLQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSKS 180 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 QLL+ ++ + TI +I+ +R K+E + +++ V+GVGY++ Sbjct: 181 QLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFS 230 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 126/231 (54%), Gaps = 5/231 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 R+LI +DE ++ +LL YL + +G + L + D+ ++D+M+P DG Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L R+IR D+P++M++AK E D++LGL++GADDYI KP++ EV+ARVK LRR Sbjct: 61 YHLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120 Query: 130 PQRELQQQ-----DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 +++ L ++ + LT E+++L L GKVF+++Q Sbjct: 121 KSMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQ 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + +++++ D I HI NLR K+E +I+ + G+GY+ +++ Sbjct: 181 IFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSN 231 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 5/231 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 ILIV+D+ + + + L + +G++ L + L +LD+M+P Sbjct: 16 MEKNSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHM 75 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+ LCR IR +PI+ ++AK ++D+++G GADDYI KP+S E +ARVK LRR Sbjct: 76 DGIELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135 Query: 128 C-----KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + ++++ + L IDE G+ ++LT E+ +L ++ +VF+ Sbjct: 136 YTYFNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTI 195 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 E++ ++ + ++ T+ HI LR K+E E FI+ V+GVGY+ E Sbjct: 196 EEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 138/231 (59%), Gaps = 3/231 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E +LIV+D+ KL LL YL Y + + G+ ++ V+ + P +++LD+M+PG Sbjct: 2 EQQYPVLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGK 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGL + R++R S++P++M+TAK E+ DR++GLE+GADDYI KP++PRE++AR+K +LRR Sbjct: 62 DGLEVLRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRR 121 Query: 128 CKP---QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 K Q + +++ + G L+L+ EF+LLK L PG+ +R+ Sbjct: 122 AKGPENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDD 181 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 L+ ++ DR+ID HI LR + +S I+ V+G GY + ++ Sbjct: 182 LMTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVSE 232 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 129/222 (58%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+VED+ K+ + L L+A +Y G+ + + + DL++LDL LP DG Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 ++ +EI+ D+P++++TA+ EE+D++ G +G DDY+ KP+SP E++ R+K +LRR + Sbjct: 61 FSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 R ++ + ++ + G+ ++LT E+ LL+ L P ++F++EQ+++ L Sbjct: 121 KGRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRL 180 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 + D + ++ LR K+E + I+ V+GVGY+ Sbjct: 181 WPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 126/228 (55%), Gaps = 4/228 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +ILIVED+ K+ ++ DYL A + + G L RQ DLILLD+MLPG DG Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +CRE+RR+ ++P++MVTA+ EE+D L GL +GADDYI KP++P E+VARV++ + R + Sbjct: 61 FAVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYE 120 Query: 130 PQ----RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + Q L I ++ K + T EF LL L+ P VFSRE L Sbjct: 121 RILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREAL 180 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ + T+ HI +R K+E A ++ + G GYR+ Sbjct: 181 FERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFR 228 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 322 bits (827), Expect = 7e-87, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 129/227 (56%), Gaps = 4/227 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + P IL+VEDE KL Q + L+ Y T+++ G L R++ PDLILLD MLPG Sbjct: 1 MSNPCILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGI 60 Query: 68 DGLTLCREIRRF-SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 GL +C+ +R+ S +PI+++TAK + DR+ GL+ GADDYI KP++ E++ARV+ LR Sbjct: 61 SGLDICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLR 120 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R E L ++ + ++++LT EF LL+ L P +V SR+Q+L Sbjct: 121 RNH--EEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQIL 178 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ + I+ +++ LR KLE+ + I+ V GVGY Sbjct: 179 ERVWGYDFMGDSNIIEVYVRYLRLKLEAEQEK-RLIQTVRGVGYVLR 224 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 130/224 (58%), Gaps = 2/224 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 RIL+V+D+ L +++ LR + P + G Q L R + PDL+LLDLMLPG+ Sbjct: 29 TMKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGS 88 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+ +CR+IR SD+PIVM+TAK + D + GLE GADDY+ KP+ P E+VARV+ LR Sbjct: 89 DGIEVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR- 147 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 ++ + + + ID + G+ + LTP EF LL L+ +P +VF+RE LL Sbjct: 148 -PGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLE 206 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 ++ R ++ H++ LR K+E + V GVGY+ Sbjct: 207 QVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 138/235 (58%), Gaps = 6/235 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+V+D+ +L LL YL + +++ +Q+ + + L++LDLMLPG DG Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63 Query: 70 LTLCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 L++CR +R S+ +PI+MVTAK EE+DR++GLEIGADDYI KP++PRE++AR++ +LRR Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123 Query: 129 KPQ-----RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + + + A ++ G + + + LT EF +LK L P + SR+ Sbjct: 124 ANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 183 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 +L+N +R+ID I LRR +E A +I+ V+G+GY + D + Sbjct: 184 KLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSK 238 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 137/227 (60%), Gaps = 7/227 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 R ++VEDE +L ++ YL A Y L G + + R+ PD+++LDL LPG DG+ Sbjct: 65 RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +CR +R FSD +VM+TA+ +E+D L+GL +GADDY+ KP+SPRE++AR++ ILRR +P+ Sbjct: 125 VCRRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPK 184 Query: 132 -------RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 L ID + R +++ LT EF LL TL+ P VFSR Q Sbjct: 185 TGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQ 244 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 L++ ++ + V + +D HI +LRRKL+ + ++R V GVGYR Sbjct: 245 LIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYR 291 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 89/241 (36%), Positives = 135/241 (56%), Gaps = 11/241 (4%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + E+ P IL+VED L ++L+ L Y + G L +Q PDL++LD MLP Sbjct: 1 MAEHVPTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DGL + R IR+ P++M+TA+ EE D ++GLE+GADDY+ KP+ RE++ARV+ +L Sbjct: 61 QLDGLEVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALL 120 Query: 126 RRCKP--------QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 RR + + + L++D + R + LDLTP EF +L L PG Sbjct: 121 RRDQRIQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPG 180 Query: 178 KVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 + FSR LL+ ++ V DR++D+ + LR+KL I V+G+GYR +A+A Sbjct: 181 RAFSRNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRLQAEAP 237 Query: 238 R 238 R Sbjct: 238 R 238 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 127/233 (54%), Gaps = 9/233 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVR-QTPPDLILLDLMLPGTD 68 +IL+V+D+ ++ L+ +L + Y + L ++ + L +LD+M+PG D Sbjct: 24 KAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMD 83 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 GL++ ++IR S IP++M++AK ++D+++GL GADDY+ KP++P E+ ARVK LRR Sbjct: 84 GLSMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRF 143 Query: 129 --------KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 + PL I++ + K LTP E+ +L L+ PG+VF Sbjct: 144 TEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVF 203 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 S + + ++++ + T+ HI+ LR K+E I+ V+GVGY+ E Sbjct: 204 STDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIE 256 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 136/228 (59%), Gaps = 8/228 (3%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 I ++ED+ + +LL + + +G +++Q PD+++LDLM+P DGL Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 73 CREIRRFS---DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 C+ +R IP++M+TAK EID+++GLE+GADDY+ KP+S RE++ARVK +LRR K Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 130 --PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + L I +F+ + +G+ + LT +F+LL L + GKV SR+ ++ Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 H++ + V DRTID HIK LR L+ + I+ + GVGY+WE + Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYG---NCIKTIRGVGYKWECE 228 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 130/232 (56%), Gaps = 4/232 (1%) Query: 4 LPIDENTP-RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDL 62 +P P R+L+V+DE L Q++ YL A + G Q + R+ PD+++LDL Sbjct: 33 IPTTATPPGRVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDL 92 Query: 63 MLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVK 122 LP DGL +CR IR FSD I+M+TA+ E D++ GL +GADDYI KP+S RE+V RV Sbjct: 93 GLPELDGLEVCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVH 152 Query: 123 TILRRCKPQRELQQQ---DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 +LRR + Q LI+D Q ++LT EF LL L+ PG+V Sbjct: 153 AVLRRPRTSTTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQV 212 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 +R L+ ++D V +R +D HI NLRRKL + + FI V GVGYR Sbjct: 213 LTRHDLVTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 4/226 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ILIV+DE ++ LL L+ Y G++ L + + L++LD+M+P DG Sbjct: 4 NILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGFE 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK-- 129 +C ++R +IPI+M++AK E+ID++ G+ GADDY+CKP++ E+ R++ + RR Sbjct: 64 VCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYFL 123 Query: 130 --PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + +IID+ + + + + LT EF +L L+ G+VFS E++ Sbjct: 124 NTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEEIFE 183 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ + ++ T+ H+ LR KLE I V+GVGY+ E Sbjct: 184 KVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIE 229 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 130/232 (56%), Gaps = 4/232 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+++DE + L L+ + +G + + + PDL+LLDLMLP G Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 LC+EI + S+IP++MV+AK E ID++LGLE+GA+DYI KP+ RE++AR+K +LRR + Sbjct: 61 YDLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 130 PQRELQ----QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 E + + L I+ G + LT E+ +L+TL P K+F+R++L Sbjct: 121 HNDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDEL 180 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 L ++ R++D I LR+K+E +++ +YG GY+ D+ Sbjct: 181 LEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGDST 232 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 135/227 (59%), Gaps = 1/227 (0%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 T ++LI++DE L + L + ++ G++ L D I+LDLMLP D Sbjct: 15 KTMKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKID 74 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G+TLC IR+ SD+ I+M+TAK +ID++LGLE+GADDY+ KP++ RE++AR++T++RR Sbjct: 75 GITLCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQ 134 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + + + L++D G + ++++LTP EF +L L G+VF RE++ Sbjct: 135 EKGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQL 194 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ + RTID H+KNLR KL+ + + I +GVGY + D Sbjct: 195 VWGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 139/232 (59%), Gaps = 5/232 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 ILI +D P + +L Y + P + + G++ + RQ P ++LLD+M+P DG Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC- 128 +CR+IR SD+P++++TA+ E+ ++++GL+IGADDYI KP+SP EV+AR++ ILRR Sbjct: 61 YEVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMT 120 Query: 129 --KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + ++ + + + L I+ + G + LT E + TL+ P KVF+R+ LL Sbjct: 121 KKENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSF-IRAVYGVGYRWEADAC 237 + L+ RT+DSHIK LR KL + ++ I+ ++GVGY++E D Sbjct: 181 DSLWGFDYFGDSRTVDSHIKRLRAKL-DMLEHPNWSIKTIWGVGYKFEVDED 231 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 133/231 (57%), Gaps = 5/231 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + +ILI +D + + + YL+ G + L PDL++LDLM+P Sbjct: 2 SSIKKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKI 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 G +C+EIR+ S++PI+M+TAK EEIDR++GLEIGADDYI KP+SPREVV R+KTI RR Sbjct: 62 FGTEVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRR 121 Query: 128 CKPQRELQQ----QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + ID +++ + +D+TP E ++L L+ G+V SRE Sbjct: 122 VGNANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSRE 181 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++L+ ++ R +D+ IK +R+K+ + S I+ VYG+GY++E Sbjct: 182 EILDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWS-IKTVYGIGYKFEV 231 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 93/228 (40%), Positives = 131/228 (57%), Gaps = 2/228 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 IL+ +DE K+ +L YL A + + +G +VL + P LI+LDLMLP G Sbjct: 5 HTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIPGE 64 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C +R S +PI+M+TAK + DRL GL+IGADDY+ KP++P EVVARV+ ILRR Sbjct: 65 EVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRTML 124 Query: 131 QRELQQQDAE--SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 L + L+ID G +LT E++LL LS P +VFSRE+L+ Sbjct: 125 DHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREELIER 184 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 ++ RTID+H+KNLR K+E +I+ VYG+GYR+ D Sbjct: 185 VFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGGDG 232 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 134/229 (58%), Gaps = 3/229 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+ EDE + ++ L+ A Y +G + L Y Q D++LLD+M+P DG Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60 Query: 70 LTLCREIRRFSDI-PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 +C + R ++ I+M+TA+ E D+++GL +GADDYI KP+SP E++AR++++LRR Sbjct: 61 FAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 129 K--PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + +R+ ++ P ID G + G +++TP E+ LL +V SR++LL Sbjct: 121 ETLRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + ++ + +T+D +I+ LR+K+E AE FI ++G GY+W + Sbjct: 181 DAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWRNE 229 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 130/226 (57%), Gaps = 2/226 (0%) Query: 14 LIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLC 73 L+V+D+ + +L YL A + G L + Q P D+++LDLMLP DG + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 74 REIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 E+RR +P++M+TA +E DR++GL+ GADDY+ KP+SPRE+V+RV+ +LRR Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 133 ELQ-QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + + LI+D + + +L+LTP EF LL L+ P +VFSRE LL+ ++ Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 RT+D H+ LR+KL + + ++ V+G GYR+ A Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVKAR 227 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 130/240 (54%), Gaps = 18/240 (7%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQ-TPPDLILLDLMLPGTD 68 ILIV+D ++ +LL D L ++ + G+ L + Q P+LILLD+M+P Sbjct: 2 KDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNMS 61 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G LC +IRR D+PI+ ++AK + +D+++G EIGADDYI KP+ E++AR++ LRR Sbjct: 62 GYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRRY 121 Query: 129 KPQRELQQ-------------QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHE 175 + R+ + L I + + + ++L+ EF+LL L+ Sbjct: 122 ERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAEN 181 Query: 176 PGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 G VF+REQ+ + ++ + T+ HIKNLR KLE E+ FI+ +G GY + + Sbjct: 182 AGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE---TERQFIKTQWGTGYVFIGE 237 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 128/231 (55%), Gaps = 6/231 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +ILIVED+ + +L DYL + + + + G L +++ DLI+LD+MLP DG Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 + R I D+P++MV+AK EEID++ GL +GADDYI KP+SP E+VARVK+ ++ + Sbjct: 61 FDILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYE 120 Query: 130 PQREL------QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + + L I++ Q K ++L EF LL ++ P +VF ++ Sbjct: 121 RLKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKD 180 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 +L ++ + T+ HI+ +R K+E ++ +I V+GVGYR Sbjct: 181 ELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRIRV 231 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 3/228 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +L+V+DE + LL YL + ++G++ L D+ILLDLMLP DG + Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR---CK 129 C++IR + I+M+TA+ E D++ GL IGADDY+ KP+ P E++ARV +++RR + Sbjct: 76 CKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAITQ 135 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 R + L I + ++ T EF L +L+ + FSRE+L+N + Sbjct: 136 SIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELVNLI 195 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 + D R +D+HIKN+R K + + I+ V+GVGY++ Sbjct: 196 WGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNGAGT 243 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 87/237 (36%), Positives = 132/237 (55%), Gaps = 11/237 (4%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYV--RQTPPDLILLDLMLPGT 67 + +IL++ED+P L +L+ DYL Y G + L + ++ DLI+LDLMLP Sbjct: 2 SKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDM 61 Query: 68 DGLTLCREIR-----RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVK 122 DG+ +C++IR + + +PIVM+TAK + DR+LGLE+GADDYI KP+ PRE++AR++ Sbjct: 62 DGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIR 121 Query: 123 TILRRCKPQREL---QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 +LRR + + L + + + K + LT +F+LL + GKV Sbjct: 122 AVLRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKV 181 Query: 180 FSREQLLNHLYDDYRVVT-DRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +REQL + +D DR ID HI LR +E + I V GVGY++ D Sbjct: 182 LNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 238 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 5/236 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYA-PTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 ILIV+DE + ++ L Y + ++ +P V+ DLI+LD+M+ G Sbjct: 1 MENASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGG 60 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 G C IR +SD PI +TA+ + D+L G +GADDYI KP++P E+ AR++ L+ Sbjct: 61 MSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLK 120 Query: 127 RCKPQRELQ--QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 R +E Q + G+ + + +LL+ P V S++Q Sbjct: 121 RTYQSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQ 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW--EADACR 238 + ++ + T+ HI+ LR K+E + +I V G+GYR+ + R Sbjct: 181 IYEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPEGKR 236 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 90/227 (39%), Positives = 134/227 (59%), Gaps = 5/227 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTP-PDLILLDLMLPGTD 68 ++L++EDE + +L YL Y +G + L + +ILLD+MLP Sbjct: 2 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G +L + IR S +P++M+TA+ EE D+LLG E+GADDY+ KP+SPREVVARVK IL R Sbjct: 62 GWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 ++ + +++D + + GK ++LTP EF LLK L GKV SRE+ LN Sbjct: 122 YGSQDDGKT-EYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNE 180 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ RT+D+HIK LR KL +++ I+ V+G+GY+ E D Sbjct: 181 VWGYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEGD 224 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL++ED+PK+ +LL L+ + G + L + D+ILLD+MLP G Sbjct: 2 REKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 + +C+ IR S +PI+M+TAK E D+++G + GADDY+ KP+S E++AR+K +LRR K Sbjct: 62 MEVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTK 121 Query: 130 PQRELQQQDAESPLIIDEGRFQASWR--GKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + L I+ ++ ++ L+ EF LL L G V SR+++L Sbjct: 122 KSVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILE 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ + D +D +IK LR K+ E+ FI+ V G+G+ + Sbjct: 182 EVWGFDYIGNDNILDLYIKYLRDKI-DRPYERKFIQTVRGIGFIF 225 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 4/223 (1%) Query: 14 LIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLC 73 ++VED+ + +++ YL + G++ + +Q DL+LLD+MLP +G+ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 74 REIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR----CK 129 + IR S+IP++M++AK ++D+ LGL GADDYI KP+S E+ ARVK +RR Sbjct: 61 KIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYSA 120 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + + + L ID G+ L LT E++LL + P KVF++EQ+ + Sbjct: 121 EEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRSV 180 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +++ I+ H++ LR K+E + +I+ ++G+GY+ Sbjct: 181 WNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 1/226 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 I+IV+DE L ++ YL++ Y L G++ L ++ T PDLILLD+ +PG DG Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 L +CREIR IP++ ++ + +D++ E+GADDY+ KP+ E+ AR+K +R Sbjct: 61 LEVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYA 120 Query: 130 PQRELQ-QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + + L+ID + G+ + LT E +LL + P +V++ EQL + Sbjct: 121 MNPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDR 180 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 +++ T+ HI +LRRK+E +I+ V G GYR+ Sbjct: 181 IWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVP 226 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 3/231 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + + T IL+VED+ + L LR Y G L PDL++LD+MLP Sbjct: 1 MSDKTRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLP 60 Query: 66 GTDGLTLCREIRRF-SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 +G + +E+R+ D P+V+++AK E D+++GL +GADDY+ KP+ +E++AR+K + Sbjct: 61 ELNGFEVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAV 120 Query: 125 LRRCKPQREL--QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 LRR P + +D + ++LT EF+LL PG+ F+R Sbjct: 121 LRRRYPSAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTR 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 E+LL+ + + + RT+D+ ++ LR K E V G+GYR+E Sbjct: 181 EELLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 137/237 (57%), Gaps = 2/237 (0%) Query: 2 TELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLD 61 +E TPRILIVED+ +L L DYL + + G++ + + PDL++LD Sbjct: 1 MSNIEEEQTPRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLD 60 Query: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 +MLPG+DGLT+CRE+R PI+M+TA+ E++D++LGLE+GADDY+ KP PR ++AR+ Sbjct: 61 VMLPGSDGLTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARI 120 Query: 122 KTILRRCK--PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 + +LRR + P E+ Q+ L+ID G + G+++D T AE+ LL L+ G++ Sbjct: 121 RALLRRSENAPSEEIPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRI 180 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 SRE + L DR+ID I +R K+ I+ V GY + + Sbjct: 181 LSREDIFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEG 237 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 318 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 89/230 (38%), Positives = 143/230 (62%), Gaps = 3/230 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 +++ +I +V+DE K+ +++ YL + YA + +G + + PDLI+LDLMLP Sbjct: 5 VNKYEKKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLP 64 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G +C +R+ S +PI+M+T K +E D L GL+IGADDY+ KP+SPR++VARVK +L Sbjct: 65 DICGEDICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALL 124 Query: 126 RRCKPQRELQQ---QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 RR + + + ++ LII++ ++ G +++LTP E+ +L T+ PGK+F+R Sbjct: 125 RRTEDELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTR 184 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 E+L+ DRTIDSHIKNLR K+E E +I + G+GY++ Sbjct: 185 EELIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 75/237 (31%), Positives = 130/237 (54%), Gaps = 12/237 (5%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N+ IL+VEDE ++ + YL Y +G + L + L ++D+M+P Sbjct: 1 MNSYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKM 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG+TL +R + P++M++AK EE+D+++GL IGADDY+ KP+ P E++ARV + LRR Sbjct: 61 DGITLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRR 120 Query: 128 C-----------KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEP 176 + A L ++E + + GK + TP EF++L L Sbjct: 121 YTKYLNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNA 180 Query: 177 GKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 G+VFS +++ ++++ + TD T+ H++N+R K+E +++ V+GVGY+ E Sbjct: 181 GRVFSADEIYERVWNENAINTD-TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 236 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 84/221 (38%), Positives = 127/221 (57%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ILI+EDE + ++ YL Y +G + R+ DL++LDLMLP DG Sbjct: 3 NILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGEE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+ +R+ SD+ I M+TAK D++ GL IGAD+Y+ KP SPRE+ ARV + RR + Sbjct: 63 VCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGCK 122 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 +E ++ LIID + G+ ++LTP EF +L L+ GKVF+RE ++ + Sbjct: 123 KENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIERAFG 182 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 +DR+ID HIKNLR+K+E +I V +GY++ Sbjct: 183 MEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 94/229 (41%), Positives = 140/229 (61%), Gaps = 6/229 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 RILIV+DEP + ++ +A G+ L +R DL++LD+ LPG DG Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60 Query: 70 LTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + R++R + P++M+TA+ +E+DR++GLE+GADDY+ KP+SPRE+VARV+ +LRR Sbjct: 61 FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT 120 Query: 129 KPQRELQQQD-----AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 L+QQ S L +D R +A++R L L P EF LL L+ PG+VF+RE Sbjct: 121 AEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTRE 180 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 LL ++ V RT+D HI+ LR KL +DAE + I+ +G+GYR+ Sbjct: 181 VLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 126/237 (53%), Gaps = 7/237 (2%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTP-PDLIL 59 M+ + IL+VEDE L + L+ Y + G L + + P PD IL Sbjct: 1 MSSNALGGAQKTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAIL 60 Query: 60 LDLMLPGTDGLTLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPRE 116 LDLMLP G +C+ +R D+P++MVTAK EIDR++G E+GADDY+ KP+S RE Sbjct: 61 LDLMLPDISGTEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRE 120 Query: 117 VVARVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEP 176 ++ R++ +LRR + + L +D + + + LT EFRLL Sbjct: 121 LMLRIRALLRRTERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRR 180 Query: 177 GKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 G+V +R+ LL+ ++ VT RT+D+H+K LR KL ++ + GVGYR+ Sbjct: 181 GRVQTRDALLSDVWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRFR 234 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 119/236 (50%), Positives = 150/236 (63%), Gaps = 1/236 (0%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M E I I IVED L LL +YL + +A I GD+++P +R PPDLILL Sbjct: 1 MMERAITMINKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILL 60 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 DLMLPG DG+TLCREIR FS +PI+MVTAK+EEIDRLLGLEIGADDY+CKP+SPREVVAR Sbjct: 61 DLMLPGADGVTLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVAR 120 Query: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 VK +LRR + + PL++ + GK L +T +EF LL PGKVF Sbjct: 121 VKAVLRR-GGEEPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVF 179 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 SR++L+ + DR ID HIKNLR+KL + I +VYGVGY++ + Sbjct: 180 SRDELIAKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKFILEG 235 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 133/221 (60%), Gaps = 2/221 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +LI+ED+P + +L+ Y+ Y + G+ L +T PD I LD+MLP DG L Sbjct: 8 VLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWEL 67 Query: 73 CREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 C+EIR IPI+M+T K E D++ GL+IGADDY+ KP+ P E+VAR+K ++RR Sbjct: 68 CQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADLL 127 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 + Q + L++D+ ++A+ K + + P E LL L+ P +VF+R+QLL+ ++ Sbjct: 128 NDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIWG 187 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 RTID HIK +R KL DA+ + I+ + GVGY++ Sbjct: 188 YAFEGDPRTIDVHIKRIREKLTEADAKWT-IKTIRGVGYKF 227 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 2/224 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+ EDE + +I L+ A + ++G + + + P D++LLD+M+P DG Sbjct: 3 RILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGFE 62 Query: 72 LCREIRR-FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 C IR ++ I+M+TA+ E D++ GL GADDYI KP+SP E+VAR++ +LRR + Sbjct: 63 ACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRVEK 122 Query: 131 -QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 +R+ ++ P ID Q + G+ +DLTP E+ L+ L V SR+ LL+ + Sbjct: 123 VKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALLDAV 182 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + +T+D +I+ LR+K+E + +I ++G GY+W Sbjct: 183 WGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKWR 226 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 89/230 (38%), Positives = 135/230 (58%), Gaps = 2/230 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + R+LI++D+ +L LL +YLR + +H L ++ PPDL++LD+MLP T Sbjct: 13 PDPTRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDT 72 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGL +CRE+R S IPI+M+TA+ + DR++GLE+GADDY+ KP+ PRE+VAR++ +LRR Sbjct: 73 DGLAVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR 132 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 R+ + L ++ + L+LT AEF LL L+ G+V SR+++L+ Sbjct: 133 --GTRDDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILD 190 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 DR+ID + LR+KL +FIR V GVGY + Sbjct: 191 GTRGIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIGGGR 240 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 5/225 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+VEDE + +++ L + P D + + + PDLILLD MLPG G+ Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 72 LCREIRRFS---DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + ++R S DIP+VM+TA+ EE DR+ GLE GADDYI KP+SP+E+VAR+K ++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 P +++ L +D + + L++ P EF+LL P +V+SREQLLNH Sbjct: 124 SPM-AVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ V DRT+D HI+ LR+ LE ++ V G GYR+ Sbjct: 183 VWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFS 226 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 85/241 (35%), Positives = 135/241 (56%), Gaps = 10/241 (4%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 IL+V+D+P++ LL YL + + G ++ + DL++LD+MLPG Sbjct: 2 NTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGD 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGLTLCR++R S++P++M+TA ++ DR++GLE+GADDY+ KP++PRE+VAR++T+LRR Sbjct: 62 DGLTLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRR 121 Query: 128 CKPQREL---------QQQDAESPLIIDEG-RFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 + E + + +D R + G +++L+ AE+RLL+ P Sbjct: 122 ARALPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPN 181 Query: 178 KVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 +V SR+QLL+ DR+ID + LR +L E I+ V G GY D Sbjct: 182 RVMSRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATDVE 241 Query: 238 R 238 R Sbjct: 242 R 242 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 5/231 (2%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASY-APTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 T +IL+V+DE + +L+ L+ ++ T +G + L ++ P D+ILLD+MLP Sbjct: 15 RTEKILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDI 74 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG LCR+IR +++ PI+ VTA+ ++D+L GL IG DDYI KP++P EV AR+ LRR Sbjct: 75 DGFELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRR 134 Query: 128 CKPQRELQQ----QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 +E + + + + T E LL L P ++F+ E Sbjct: 135 QHMTQEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTAE 194 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 QL ++ + D+T+ HI LR+K+E ++I + G+GY++ Sbjct: 195 QLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIP 245 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 7/229 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +ILIVEDE + +L+ D L++ + + G + + +L +LD+MLP DG Sbjct: 3 KILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSE 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP- 130 + + IRR + P++M+TAK ++D+++ +GADDYI KP+S E+ ARVK +LRR + Sbjct: 63 VLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEGT 122 Query: 131 ------QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 Q + L I+ + +G ++ L EF LLK L+ P +V + Q Sbjct: 123 HHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIAQ 182 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ + D T+ HI LR K+E A ++ V G+GYR Sbjct: 183 IYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLV 231 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 129/229 (56%), Gaps = 2/229 (0%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 + +LIVED + ++ +YL Y + S+G + L R PDL+LLD+M+PG Sbjct: 19 EPGMKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPG 78 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DGL R R +P++ +TA+ E+D++LGLE+GADDY+ KP+S E++ARV+ LR Sbjct: 79 MDGLEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLR 138 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R + L +D RG+ +DLT +EF L+ PG+VF+R + L Sbjct: 139 RSS-EPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLE-L 196 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 + + ++RTID H++NLR K+E+ + I V+GVGYR D Sbjct: 197 LEQLQEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPD 245 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 IL+V+D+ + +LL D+L S+ ++ +Q P ++LD+M+PG +G Sbjct: 6 TILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGFE 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 LCR IR S +PI+ ++A+ +++D++ GL +G DDYI K SP E+VARVK +LRR + Sbjct: 66 LCRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSATR 125 Query: 132 RE-LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 R ++ L ++ + G + LTP EF LL+ + P VF+ +QLL + Sbjct: 126 RPMEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQLLAKFW 185 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 V TI H+ LR K+E+ + F+ V+GVGYR+E Sbjct: 186 --DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFEG 227 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 2/224 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +ILIV+DE + L+ +L Y +G + L ++ LI+LD+M+P DG Sbjct: 3 TKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGW 62 Query: 71 TLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C EIR+ + +PI+M+TA+ E D++ GL+IGADDY+ KP+ P E++ARV +LRR Sbjct: 63 EVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAV 122 Query: 130 -PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 Q +Q L +D + + + LTP EF LLK L P +VF+R+QLL Sbjct: 123 VNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLK 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ + +RT+DSHIK++R KL+ + I V+GVGY+ Sbjct: 183 IWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKL 226 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 128/233 (54%), Gaps = 10/233 (4%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 RIL+ +D ++ ++L L Y G++VL DLI+LD+M+P +G Sbjct: 2 QTRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMNG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 C ++R S++PI+ +TAK + D+ LG GADDY+ KP+S E+ ARVK +LRR + Sbjct: 61 YQTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQ 120 Query: 130 PQRELQQQ--------DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 + +++ + L + + A GK ++LT EF +L TL P ++FS Sbjct: 121 VYKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIFS 180 Query: 182 REQLLNHLYDDYRVVT-DRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 EQL +++ + + TI HI+NLR+K+E A +I+ ++G GYR+E Sbjct: 181 AEQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 316 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 139/229 (60%), Gaps = 2/229 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 ILI +D+ KL +L+ Y + + L G + L +++ PD+++LD+M+PG Sbjct: 1 MPANSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGI 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG +CR R+F+DIPI+ ++AK +E DRL+GL +GADDY+ KP+ RE++ARVK+ LRR Sbjct: 61 DGFEVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRR 120 Query: 128 CKPQR-ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + L ID+ RF+ + + LTP EF LL L+ P +VFSR QLL Sbjct: 121 RRGEVLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLL 180 Query: 187 NHLYDDYRV-VTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 +RTID+HI+NLR+KLE ++ +I VYGVGY+++ Sbjct: 181 EKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQG 229 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 131/224 (58%), Gaps = 7/224 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 RILIV+DE ++ +L YL Y + G++ L + P DL++LD+MLP DG Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 ++ REI+++++ P++M+TA+ + D + G E+GADDYI KP++ + ++ARVK++LR K Sbjct: 66 WSILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLR--K 123 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 ++ L+I++ S ++L P E+ LL L SRE+LLN + Sbjct: 124 TNNMVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEV 183 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + + DRTID+HIKNLR+K+ I+ + G+GY+ + Sbjct: 184 WGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKLD 222 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 132/236 (55%), Gaps = 6/236 (2%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 ++ N ILI +DE + L DY+ Y ++G ++L V Q DL+LLD+M+P Sbjct: 1 MENNQYTILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 DG+ RE+R IP++MVTAK +E DR+ GL GADDYI KP+SP+E++AR++ + Sbjct: 61 EMDGMEALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQI 120 Query: 126 RRCKPQR--ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 RR E +++ + ++ + G+ + LT EF LL P +VF+RE Sbjct: 121 RRNYGYNDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNRE 180 Query: 184 QLLNHLYDDYR-VVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 QLL+H++ RT+D+H+K +R K+ + + R VYGVGY E R Sbjct: 181 QLLDHVWGVNYTTGGHRTVDTHMKTMRFKMG---SGGDYFRTVYGVGYVLEDGEGR 233 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 116/237 (48%), Gaps = 6/237 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASY-APTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 ILIV+DE + Q++ L + S ++ L V++ LILLD+M+PG Sbjct: 1 MENATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPG 60 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 G + EIRR ++ PI +TAK ++D+L G GADDYI KP++P E++AR+K L+ Sbjct: 61 QTGFDVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLK 120 Query: 127 RCKPQRE-----LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 R +E + I + G+ + + +LL+ P +V S Sbjct: 121 RTYIHKEVAAASVSSAYEYERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLS 180 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 ++Q+ ++ T+ HI+ LR K+E + +I + G+GY++ + R Sbjct: 181 KDQIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVPNPAR 237 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 137/232 (59%), Gaps = 6/232 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 ++ I IV+D P + +L+ YL Y T+++ G+++ + + PDLI+LD+M+PG Sbjct: 2 SSSQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGE 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGL+LCR IR S+ P++ ++A+ E++D +LGLE+G DDY+ KP++PRE++ARVK +LRR Sbjct: 62 DGLSLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRR 121 Query: 128 CKPQRELQQ-----QDAESPLIIDEGRFQAS-WRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 P E +++ + G + L+ EFRLL L +PG++ + Sbjct: 122 ATPASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVT 181 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 R++LLN + DR+ID+ I LRRK+E +IR +G GY + Sbjct: 182 RDELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 139/226 (61%), Gaps = 5/226 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 I IV+D+ + Q++ YL+ Y T I ++ + ++ PPDL +LD+MLPG Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 +G CR IR S+ PI+MV+A+ EE+D++LGLE+G+DDY+ KP+SPRE+VARV L+R Sbjct: 61 NGYEFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQR 120 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 K + +Q A S L++D+ + G+ +++T EF++L LS P + FSR++LL+ Sbjct: 121 WKQMKSHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELLS 180 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ +DR +D I+ +R+KL+ + + V+G GYR Sbjct: 181 LIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRLR 221 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 6/225 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +I+++EDEP + LL +L++ Y + G + L V+ PDL+LLDLMLPG G Sbjct: 2 AHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSG 61 Query: 70 LTLCREIR---RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 +C+ ++ + IPI+M+TA+ +E+DR+LG E+GADDY+ KP+SPRE++ R+KT+LR Sbjct: 62 TDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLR 121 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R L D + G LTP EF L GKV SREQLL Sbjct: 122 RNVNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQLL 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 ++ + RT+D+H++ LR+KL ++ V G+GYR Sbjct: 182 SNAWGYEFEGYSRTVDTHVRRLRKKLGPY---ADWLETVRGIGYR 223 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +ILIV+DE + + DY Y S+G + + Y + D+ILLD+M+P DG Sbjct: 3 EKILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD-IDIILLDIMMPNIDGF 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C++IR PI+ ++A+ EID++ GL +G DDYI KP+S +E+ ARV+ LRR K Sbjct: 62 QVCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 131 QR-ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + + + L +D + + + + T EF +++ L+ P +VFS+EQ+ + Sbjct: 122 IPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + T+ HIK +R K +A + I V+GVGYRWE Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 130/230 (56%), Gaps = 10/230 (4%) Query: 13 ILIVEDEPKLGQLLIDYLRAAS-YAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 I+I+ED+ + Q + L + T+ + G+ L V + PP+LILLD+ LP +G Sbjct: 5 IVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLMNGFE 64 Query: 72 LCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 +CR +RR + +PI+M+TA+ +E D++ GL +GADDYI KP+S RE++AR+ +LRR Sbjct: 65 ICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAVLRRT 124 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + + L ID F +G+ ++LT EF LLK L+ G+V +RE LL+ Sbjct: 125 EG--TPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLLDR 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 ++ RT+D HI+ +R+KL +I G+GYR+ + Sbjct: 183 VWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRFVEAGKQ 228 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 3/224 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P ILIV+D+P + +L+ +L + G L + + D+++LD+M+P DG Sbjct: 32 PNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C E+R++ DIPI+M+TAK E ++ G +G DDY+ KP+ P E+V RVK +L+R + Sbjct: 92 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + Q ++++ F+ + + + L EF LL TL + G+ SREQL+ ++ Sbjct: 152 --TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVW 209 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 +RT+D HI LR K + ++ S I+ + G+GYR E Sbjct: 210 GYDFEGNERTLDVHINRLREKFQEEKSKFS-IKTIRGLGYRLEV 252 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 137/228 (60%), Gaps = 4/228 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL++ED+ ++ ++ +L +Y+ S G + L ++ DLI+LD+MLP DG T Sbjct: 4 KILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDGFT 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+ IR S++PI++++AK +E+D++ GL++GADDYI KP+S E+ ARV+ ++R K Sbjct: 64 VCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKGY 123 Query: 132 RELQQQDAE----SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + ++ + L I + + K ++LT EF LL L+ KVF++++L Sbjct: 124 NKKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKKELYE 183 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++++ + + TI H+K LR+KL+ +I+ V+G GY++ + Sbjct: 184 NVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFIGE 231 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 5/233 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +IL+VED+ + +++ YL + + G + DL+LLDLMLPG Sbjct: 1 MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGL 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG +C++IR S PI+M+TAK + +++ GL IGADDY+ KP+ E++AR+ +LRR Sbjct: 61 DGYQVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRR 120 Query: 128 CKPQRE-----LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + E + LI D F ++++ E +LLK L P +VF R Sbjct: 121 IEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKR 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 E+L+ ++ DR ID +IK LR++L+S + I+ V+G+GY++E + Sbjct: 181 EELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEVE 233 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 100/230 (43%), Positives = 143/230 (62%), Gaps = 6/230 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL++ED+P + L+ YL+ + +S G L R+ PD ILLDLMLPG DG Sbjct: 2 AKKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDG 61 Query: 70 LTLCREIRRF---SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 LT+ R I++ S P+V+VTAK EE DR++GLE+GADDYI KP+ P+E+VARVK +LR Sbjct: 62 LTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLR 121 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R + Q+ L ++ + P+ ID GR +A++ G LT EF LL L G+V RE LL Sbjct: 122 RRETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLL 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 N ++ D TDRT+D HI+ LR+K+ A ++ V +GYR+ + Sbjct: 182 NTVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRFREEG 228 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 5/227 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +LIVEDE + ++++Y+R + G L ++ P DL++LD+M+P DG Sbjct: 20 MANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDG 79 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 ++C+ R S++PI+M+TAK E D+L G E GADDY+ KP+SP+ ++A+ +LRR Sbjct: 80 FSVCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSS 139 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 P +++ + G+ + LT E+ LL L PG++F+R+QLLN + Sbjct: 140 P--APLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRI 197 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 + T RT+D+HIK LR+KL I + GY++E Sbjct: 198 WGYDFEGTTRTVDTHIKTLRQKLGDEG---KHIVTLIRSGYKFEVAV 241 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 77/242 (31%), Positives = 125/242 (51%), Gaps = 16/242 (6%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 ++ ILI +D+ + +LL YL + Y G + L V+ DL+LLD+M+P Sbjct: 5 SPSSRCILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPR 64 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DG + R +R S +P++MV+AK ++ D+++GL++GADDY+ KP++P E +ARV++ LR Sbjct: 65 IDGYQVLRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLR 124 Query: 127 RCKPQRE--------------LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTL 172 R + + + L +D + LDLTP EFR+L Sbjct: 125 RAYGMPAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLF 184 Query: 173 SHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 PG+VF+++Q+ + + V + + I LR KL +I V G+GYR Sbjct: 185 MSHPGRVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRM 242 Query: 233 EA 234 EA Sbjct: 243 EA 244 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 138/227 (60%), Gaps = 6/227 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPD--LILLDLMLPGTDG 69 +ILIV+D+ ++ QLL Y R Y P +G + + T PD L++LDLM+P +G Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKL-NTMPDISLVILDLMMPEMNG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 + + R++R+ S IPI++++AK ++D++ GL GADDY+ KP++P EV+ARVK++LRR + Sbjct: 61 MDVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 120 Query: 130 PQ--RELQQQDAESPLIIDEGRFQA-SWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 Q + PL+I++ + + +G + LT EF +L L+ P +VFS + + Sbjct: 121 NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDIF 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ VV+ +T+ H+ +LR K+E+ + I V+GVGY+ E Sbjct: 181 ERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 227 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 133/226 (58%), Gaps = 1/226 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 RILI+EDE + L D L Y + G++ L V PDL+LLD+M+P DG Sbjct: 1 MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDG 60 Query: 70 LTLCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 LC E+RR ++ +PI+M+TAK + DR+ GL+ GADDY+ KP+S E++ARV+ +LRR Sbjct: 61 FALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRH 120 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + ++ + ID + A K L T E+ +L+ LS PG+ SRE+ L+ Sbjct: 121 QREKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDV 180 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ T RT+D+HI +LR K+ES + +I+ V+GVGYR E Sbjct: 181 VWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_C1AAZ5 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AAZ5_GEMAT Length = 239 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 129/241 (53%), Gaps = 7/241 (2%) Query: 4 LPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLM 63 P RIL+V+DEP++ L+ +L A Y + G L R+ P LI+LDLM Sbjct: 2 NPAPPAADRILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLM 61 Query: 64 LPGTDGLTLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 LPG G + ++R ++ ++M+TA+ EE DR+ GL +GADDY+ KP+SP E+V R Sbjct: 62 LPGMSGFDVLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLR 121 Query: 121 VKTILRRCKPQRELQ-QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 V ILRR + PL ID G+ ++LTP EF+LL TL+ G+V Sbjct: 122 VGAILRRTGSATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRV 181 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRI 239 R LL +++ + RT+D H++ LR KL + I V G GYR A A R+ Sbjct: 182 QGRGHLLETVWEAAPDIQTRTVDMHVQRLRSKLGAAG---ELIETVRGFGYRLRASAPRL 238 Query: 240 V 240 V Sbjct: 239 V 239 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 89/233 (38%), Positives = 129/233 (55%), Gaps = 5/233 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 IL+V+DEP + +L L A YA Q + PDLILLD MLPGT Sbjct: 1 MIEKTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGT 60 Query: 68 DGLTLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 G+ L R ++R S+IPI+M+TAK EE +++ GLE+GADDYI KP+SPRE+VAR+K + Sbjct: 61 SGIELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 125 LRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 LRR + + L +D + + + + P E+RLL+ +V++R Q Sbjct: 121 LRRTDSMG-ISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQ 179 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 LL+H++ V +RT+D HI+ LR+ L FI+ V G GYR+ Sbjct: 180 LLDHVWGGNVYVEERTVDVHIRRLRKALSLEG-HDRFIQTVRGAGYRFSNKVA 231 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 131/232 (56%), Gaps = 6/232 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 ILIV+DE + +++ L A Y + Q + PDLILLD MLPGT Sbjct: 1 MVGKTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGT 60 Query: 68 DGLTLCREIRRFS---DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 G+ L R ++R DIPI+M+TAK EE +++ GLE+GADDYI KP+SPRE+VAR+K + Sbjct: 61 SGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120 Query: 125 LRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 LRR P + + L++D + + GK ++ P E+RLL+ + ++R Q Sbjct: 121 LRRTGP-GDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQ 179 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 LL+ ++ V +RT+D HI+ LR+ L + ++ V G GYR+ + Sbjct: 180 LLDQVWGGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRFSTKS 229 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 88/226 (38%), Positives = 139/226 (61%), Gaps = 2/226 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 + IVEDEP + ++L YL + Y +G + L +R+ PD ++LDLMLP G Sbjct: 4 TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEE 63 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C++IR SD+PI+M++AK E DR+ G+ IGADDY+ KP+SPREV+ R++ ILRR + Sbjct: 64 ICKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTL 123 Query: 132 RELQQ-QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 +++ + +IID + + + + LTP EF ++ ++ PG+VFSR LL + Sbjct: 124 NKMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADLLQKIQ 183 Query: 191 DDYRV-VTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +D +R+ID HIKNLR+KLE + +I V+G+GY++ Sbjct: 184 EDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGGK 229 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 136/228 (59%), Gaps = 3/228 (1%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 ++LIV+DE K+ +++ YL G+Q L + PDLI+LDLMLP G Sbjct: 5 KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGE 64 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR-CK 129 +C +R+ S +PI+M+TAKI+E + GL +GADDYI KP+SPRE++AR+ I RR + Sbjct: 65 EICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRLNE 124 Query: 130 PQRELQQQDAE--SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 L + + + L+ID + + G+ + LT ++++L TL P K F+RE+L++ Sbjct: 125 EVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTREELIS 184 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 D DR +D+H+KN+R+K+E+ + +I V+G GYR+ + Sbjct: 185 TALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGE 232 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 134/227 (59%), Gaps = 4/227 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTP-PDLILLDLMLPGTDGL 70 +ILIV+D+ ++ +LL Y++ Y P G + + + P L++LD+M+P G+ Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSGM 61 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + +E+R+ S IPI++V+AK ++D++ GL GADDY+ KP++P EV+ARVK++LRR + Sbjct: 62 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 121 Query: 131 Q--RELQQQDAESPLIIDEGRFQA-SWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + PL I + + + GK + LT EF +L L+ P +VFS +++ Sbjct: 122 EVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 ++ +V+ +T+ H+ +LR K+E + I V+GVGY+ EA Sbjct: 182 RVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVEA 228 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 127/223 (56%), Gaps = 6/223 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL+V+D+P + ++ + + + + PPDLI+LD+MLP GL Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 72 LCREI-RRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + +++ R++ +IP++ +TA+ ++D +LGLE+GADDYI KP++PR ++AR+K + RR + Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + + + ID + GK +L EF LLK + PGKVF+R+++L+ ++ Sbjct: 122 GPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRVW 181 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 RT+D HI LR K+ S FI+ V GVGY+ Sbjct: 182 GMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKLV 219 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 94/227 (41%), Positives = 141/227 (62%), Gaps = 4/227 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + I ++ED+ + +L+ L++A YA L S +L + PP L +LD+M+PG DG Sbjct: 2 SQTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDG 61 Query: 70 LTLCREIRRF---SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 L +CR +R S IPI+ VTA+ E DR+LGLE+GADDYI KP++PRE++ARVK +LR Sbjct: 62 LDVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLR 121 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R + + ++ID Q RG++ T EFRLL L+ PG+VFSR+ LL Sbjct: 122 RFERPSTPS-LISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ D R VT R++D +++ +R K+ES F++ V G GYR+E Sbjct: 181 DAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227 >UniRef50_Q0HYY3 Two component transcriptional regulator, winged helix family n=6 Tax=Shewanella RepID=Q0HYY3_SHESR Length = 253 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 123/221 (55%), Gaps = 1/221 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+VEDE L Q+++ L A ++ + Q ++ DL+LLD MLP DGL L Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLLL 82 Query: 73 CREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 C+++R +P++++TA+ E D +LGLE GADDY+ KP+S E+ AR K +LRR Sbjct: 83 CQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLSA 142 Query: 132 RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYD 191 +Q L ID + L LT EF LL L+ P +VFSR QLL+ ++ Sbjct: 143 APTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVWG 202 Query: 192 DYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 + T++SHI LR KL + + ++ V+GVGY++ Sbjct: 203 YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243 >UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostridium RepID=A7GIT8_CLOBL Length = 230 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 117/229 (51%), Gaps = 2/229 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + +ILIV+D+ + + L +L Y +G++ L + DLIL+D+M+P DG Sbjct: 2 SYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKIDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR-- 127 + IRR ++IPI+ +TAK + D++ G G DDYI KP+ E+ R+ IL+R Sbjct: 62 FEAIKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVS 121 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 E + L ++ + LTP EF +L L+ G+VF +L Sbjct: 122 TGVVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSELYE 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 ++ + D ++ +HI+NLR KL +I+ V+GVGY+ E +A Sbjct: 182 RVWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 126/235 (53%), Gaps = 2/235 (0%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 MT P +L+VED+P + L L A Y + G++ L R DLI++ Sbjct: 8 MTRTPQTPAR-TVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIII 66 Query: 61 DLMLPGTDGLTLCREIR-RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVA 119 D+MLP +G L R +R +P++M++A+ E+D+++GLE+GA+DYI KP+S E++A Sbjct: 67 DVMLPRLNGFELLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLA 126 Query: 120 RVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 RVK +LRR R Q ++I+ + +++LT EF +L L+ G+V Sbjct: 127 RVKAVLRRDAIARADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRV 186 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 SREQ+ ++ T RTID+ I LR KLE + V GVGYR+ Sbjct: 187 LSREQIQAKVWGPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRFVP 241 >UniRef50_A6LQJ3 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridium RepID=A6LQJ3_CLOB8 Length = 231 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 1/223 (0%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ILIVEDE + L+ ++R +Y S G + L DLILLD+M+P DG++ Sbjct: 2 NILIVEDERDIRNLISLHMRKENYEVYEASDGREALNIFENEKIDLILLDIMMPNVDGIS 61 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 + +++R S IPI+ +TA + D++L L +GADDY+ KP SP E+ ARV + LRRC Sbjct: 62 VIQKVRAISTIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCYKY 121 Query: 132 RELQQQD-AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 E + + L + F+ + +DL P EF++LK L GKVF+++Q+ ++ Sbjct: 122 AEHKDIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQIYEEVW 181 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ I H+ ++R K+E +I+ + G+GY+ E Sbjct: 182 EEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYKIE 224 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 136/228 (59%), Gaps = 6/228 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYV-RQTPPDLILLDLMLPG 66 ++L+V+DE ++ +L+ D+L ++Y +G+Q + Q LI+LD+M+P Sbjct: 1 MERLKVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPK 60 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DG +C+EIR++S +PI+M+TAK +E D LLG E+G D+YI KP+SP+ +VARV+ I+R Sbjct: 61 MDGWQVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVR 120 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R + L + ++ID+ + ++L+ EF LL G SRE++L Sbjct: 121 RS--IQTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKIL 178 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 N++++ RTID+H+K LR K+ +I+ ++G+GY++E Sbjct: 179 NNVWNYDYFGDARTIDTHVKKLRSKMGDKG---DYIKTIWGMGYKFEV 223 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 3/225 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 ILIVEDE K+ ++L L Y+ T+ +G + L + L+LLD+MLPG Sbjct: 1 MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGL 60 Query: 68 DGLTLCREIRRF-SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 GL + R +R+ S P++++TA+ D++ GL+IGA+DY+ KP+ E++AR++ LR Sbjct: 61 SGLEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR 120 Query: 127 RCK-PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + ++ L ++E + K ++LTP EF LL + P +V +REQ+ Sbjct: 121 QNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQI 180 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 L+ ++ + +D +I+ +R+KL E+ I + GVGY Sbjct: 181 LSSVWGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGY 224 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 130/231 (56%), Gaps = 4/231 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +L+V+DEP++ + L T ++G + + VR+ PD++LLD+M+P DG Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 R IR FS +P++++TAK EE DR+ GLE+GADDY+ KP+S RE+++R++ +LRR Q Sbjct: 69 LRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQP 128 Query: 133 ELQQQD--AESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + Q + L ID R + GK ++L P E+RLL L G V + E LL+ ++ Sbjct: 129 PIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKVW 188 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE--ADACRI 239 + +I LR+K+E + +I GVGYR+ A R+ Sbjct: 189 GPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFVDFPGARRL 239 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 123/236 (52%), Gaps = 8/236 (3%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 R+LIVED+ + + YL AA + + G +V + + DLILLDLMLPG Sbjct: 2 AEKRRVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGK 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 G +CREIR DIPI+MVTA+ E +D++ GL +GADDYI KP+ P E+VARV LR+ Sbjct: 62 SGYDICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQ 121 Query: 128 CKP--------QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 + E ++ + L I ++ + + EF LLK L+ P V Sbjct: 122 YDRMMRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIV 181 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 FSREQL ++ V T+ HI +R K+E + V+G GYR+ D Sbjct: 182 FSREQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 6/226 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 IL+VED+ ++ +L+ +L Y + S G + + + DLILLD+M+P Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 +G + + IR S++PI+M+TA EE D++ G ++G DDYI KP+S ++ RV+ +LRR Sbjct: 61 NGFEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 120 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + + ID ++ + LT EF +L+ L KV +RE ++ Sbjct: 121 SY-DKNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVE 179 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ R ID+HIKNLR+KL +I+ + G+GY+ + Sbjct: 180 KVWGYDYFGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKID 220 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 138/236 (58%), Gaps = 5/236 (2%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +TP IL+VED+ ++ QL+ YLR ++ ++ + + DLI+LDLMLPG Sbjct: 15 TSTPHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGE 74 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGL++CR +R S +PI+M+TAK EEIDR++GLE+GADDY+ KP++PRE++AR++ +LRR Sbjct: 75 DGLSICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR 134 Query: 128 ----CKPQRELQQQDAESPLIIDEGRFQAS-WRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + ++ + ++D G Q G + LT AEF LL + PG+V SR Sbjct: 135 GSGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLSR 194 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 +QLL+ +R+ID + +R+K+E I+ + GY + + R Sbjct: 195 DQLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPEVSR 250 >UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT63_9FIRM Length = 233 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 125/233 (53%), Gaps = 3/233 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +IL+ ED+ + + YL ++ G + + + DLI++DLM+P Sbjct: 1 MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRL 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 G +++R S +PI++++AK E+ D+++GL IGADDYI KP++P E++ARV + LRR Sbjct: 61 SGEEAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRR 120 Query: 128 CKPQR--ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 + + ++ S K+++LT E+++L+ L P KVFS E + Sbjct: 121 YHSYDNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESI 180 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 H+++ + +T+ HI+ +R K+E +I+ +G+GY++ + R Sbjct: 181 YEHVWN-EPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDNKRR 232 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 4/222 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RI IVEDE ++ + L L + + +G + + Q DL+LLD+MLPG DG+T Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 +C+ +R S +PI+M+TAK E D++ GL+IGADDY+ KP++ E++AR++ LR+ P Sbjct: 66 ICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVPD 125 Query: 132 R---ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 L+++ L++ R++ G+ + LT E+ LL+ + V +R+Q+L Sbjct: 126 NGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILEK 185 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 ++ +D +I+ LR KL + +I V GVGY Sbjct: 186 VWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGY 226 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 1/223 (0%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 +ILI++D+ + ++ L Y T+ + G + L V + PDLI+LD+M+P DGL Sbjct: 3 TKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGL 62 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C+ +R+ + IPI+MVT DR+ GLE GADDY+ KP++ E+VARVK +LRR Sbjct: 63 EVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 +++ ++ S L++D QA + ++ + EF LL P +V +RE L++ ++ Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ ++ LR KLE+ E I V G GY Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLEA-QNEPRLIHTVRGAGYVLR 224 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 130/234 (55%), Gaps = 9/234 (3%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +IL+VED+ + + + L + Y +G L + DL++LD+M+P Sbjct: 6 MRKGKILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLL-DETIDLVILDIMMPKL 64 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 +GL +C EIR+ S++P++ +TAK +E D+LLGL +G DDY+ KP+S E++ RVK +LRR Sbjct: 65 NGLKVCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRR 124 Query: 128 CK-------PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 + + E ++ + ++ + G ++++ E+++L+ + PGK+F Sbjct: 125 YQVYQGKSTNENEAEKIIEIGSIKLNTAFNEIVADGNKVEVSDLEYKILRLMMQHPGKIF 184 Query: 181 SREQLLNHLYDDYRVVT-DRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 S + + ++ + T T+ HI+ LR K+E + +I+ V+G GYR+E Sbjct: 185 STQNIYESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRFE 238 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 97/226 (42%), Positives = 144/226 (63%), Gaps = 1/226 (0%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + ++LIVEDE + ++L DYL Y +++ GD+V+ +V+ +ILLD+MLP Sbjct: 1 MSNEQVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRL 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG T+CRE+R+FSD+PI+M+TAK+EE+DR++G E+G DDYICKP+SPREVVARV +LRR Sbjct: 61 DGKTVCREVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRR 120 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 ++ A P+ +++ A G L LTP+EF + L P +VF+R QL+ Sbjct: 121 T-FKKSSDDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQLIE 179 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + +RTID HIKNLR+K+ + I++ YG GY+ Sbjct: 180 KVQGYNYDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKIV 225 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 R+L+++D+PK+ +L L Y + + G + + ++ PP+L++LD+MLPG DG Sbjct: 3 ARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGW 62 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +C+ R+ + PI++++A+ E ++ GL +GADDY+ KP++ E++ARV+ +LRR Sbjct: 63 EICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRR-- 120 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + S L +D + G +L LT EF LL H P +V +REQ+++ ++ Sbjct: 121 -ITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVW 179 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 ++ +I LR+K+E + I V GVGY + Sbjct: 180 GLDFTGGSNVLEVYINMLRQKIEDYGS--RIIHTVRGVGYVLKEQG 223 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 8/231 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP-DLILLDLMLPGTD 68 T RILI++D+ L LL DY + G + V P D+++LD+MLP D Sbjct: 2 THRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDID 61 Query: 69 GLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 G ++IR S +P++M+TA+ ++ DR++GLE+GADDY+ KP++PRE++AR+K +LRR Sbjct: 62 GFETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRA 121 Query: 129 KPQRELQQQ-------DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 E + ID G+ + +T E +L L G + Sbjct: 122 TASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPLT 181 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 R++LL+ DR+ID HI +R+KLE + +I+ V+G GY W Sbjct: 182 RDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMW 232 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 81/239 (33%), Positives = 128/239 (53%), Gaps = 10/239 (4%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQ--TPPDLILLDLML 64 + T +L++ED+P L +L+ +YL Y + L + DL++LDLML Sbjct: 5 NSGTKTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLML 64 Query: 65 PGTDGLTLCREIRRFSD-----IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVA 119 P DG+ +C+ IR+ D I+M+TAK + DR+LGLE+GADDY+ KP+ PRE++A Sbjct: 65 PDMDGMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLA 124 Query: 120 RVKTILRRCKPQ--RELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 R++ ++RR ++ + L + + + + + LT +F+LL + G Sbjct: 125 RIRAVMRRHDLPLHQQKEDNLVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSG 184 Query: 178 KVFSREQLLNHLYDDYRVVT-DRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 KV SREQL + + +D DR ID HI LR +E + I V GVGY++ D Sbjct: 185 KVLSREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 243 >UniRef50_B2J8Q5 Two component transcriptional regulator, winged helix family n=8 Tax=Cyanobacteria RepID=B2J8Q5_NOSP7 Length = 239 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 2/234 (0%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 I TP+ILIV+D+ + L+ +L Y + G L Q P L++LD LP Sbjct: 4 ITATTPKILIVDDDFGVRNLVHRFLSRK-YQIEAAADGKTALSMFEQFNPALVILDWNLP 62 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 +G +LC+E++ +++ ++++T++ +E D++ L GADD++ KP+S EV R++ +L Sbjct: 63 DVNGYSLCQEMQSRTNVLVLILTSRTDEADKIKILSAGADDFMTKPFSLAEVEVRIEALL 122 Query: 126 RRCK-PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 RR + Q+ L+I+ + K+L LT EF +L L+ P + +SR Q Sbjct: 123 RRIRYINPSPTQRIIFKQLVINPEGREVILNDKLLGLTALEFNILHFLASHPNQAWSRPQ 182 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 L+ ++ V R +D HI LR+K+E + FI+ V G GY++EA Sbjct: 183 LIQKIWGCDYVGDGRVVDVHIGQLRKKMEVDPSVPEFIKTVRGYGYKFEAPDEN 236 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 131/228 (57%), Gaps = 6/228 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL++ED+ L LL L ++ + G + RQ PDLILLD+MLP +DG Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDG 65 Query: 70 LTLCREIRRFSD---IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 L +C+ IR+ D IP++ +TA+ E DR++GLE+GA+DY+ KP+ RE++AR+K R Sbjct: 66 LDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR 125 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 Q + + +D Q G L LT EFRLL+ L + PG VFSREQLL Sbjct: 126 ---NQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLL 182 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 N ++ R +TDR +D ++ LR+K+E A I +V G GY +E Sbjct: 183 NAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEP 230 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 90/227 (39%), Positives = 133/227 (58%), Gaps = 4/227 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQ---TPPDLILLDLMLPG 66 RIL+V+DEP + +L YL A + + + G L +R P DL+LLD+M+PG Sbjct: 1 MTRILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPG 60 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DGL + R +R +D +++VTA+ EE+D+L+GL +GADDY+ KP+SPREV ARVK++LR Sbjct: 61 MDGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLR 120 Query: 127 RCK-PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 R + + L +D + + G + LT EF LL L PG+VFSR QL Sbjct: 121 RRRDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQL 180 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 L ++ + +R +D HI+NLR +L + I V GVGY++ Sbjct: 181 LEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKF 227 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 3/226 (1%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTD 68 + ILI+ED+P + + L D Y + GD L P LI+LDLMLP + Sbjct: 3 HAETILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVN 62 Query: 69 GLTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 G +CR +R ++PI+M+TAK +E D +LGL++GADDY+ KP+S +E++ARV+ LRR Sbjct: 63 GYEICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRR 122 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + ++ D G+ + L+P EF LL L G+ SR+++++ Sbjct: 123 QR--KQTGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMS 180 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 ++ VT R+ID + LR K+E AE ++ V GY++E Sbjct: 181 TVWGYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 107/227 (47%), Positives = 153/227 (67%), Gaps = 6/227 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +++VEDE +L L+ DYL A+ + ++ G + Q P+L++LDLM+P DG Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 LT+CR++R SD+PI+MVTA+ EEIDR+LGL +GADDY+CKP+SP+E+VARV+ +LRR Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLD 120 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + E +Q D ID+ + + ++ K L+LTP EFRLL+ G+V+SR QLL+H+ Sbjct: 121 RKAEPEQNDLF---RIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQLLDHI 177 Query: 190 YDDYRVVTDRTIDSHIKNLRRKL---ESLDAEQSFIRAVYGVGYRWE 233 D V DR IDSHIKNLRRK+ +++AVYGVGYR+E Sbjct: 178 NPDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRFE 224 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 86/243 (35%), Positives = 136/243 (55%), Gaps = 13/243 (5%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 RILIVED+ +L L +YL + ++ +G + + ++ PDL++LDLMLPG Sbjct: 22 TNEAWRILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPG 81 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 DGL++CR++R + PI+M+TA+ +++D++LGLE+GADDY+CKP PR ++AR++ +LR Sbjct: 82 EDGLSICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLR 141 Query: 127 RCKPQRELQQ-------------QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLS 173 R K Q E + + L+ID +A + +DLT AEF LL L+ Sbjct: 142 RVKEQGEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLA 201 Query: 174 HEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 G+V SRE++ L DR+ID + +R K+ I+ V GY + Sbjct: 202 SSAGRVLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFV 261 Query: 234 ADA 236 +A Sbjct: 262 KEA 264 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 137/235 (58%), Gaps = 6/235 (2%) Query: 2 TELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLD 61 + ++L+V+DE + +L+ +L Y +G +VLP + + PDL++LD Sbjct: 1 MKNQSGNPGQKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILD 60 Query: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 LMLPG G+ LC++I+ +PI+MVTAK E + +LGLE+GADDY+ KP+S RE++ARV Sbjct: 61 LMLPGIGGMDLCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARV 120 Query: 122 KTILRRCKPQRELQQQ---DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGK 178 +++LRR K E +Q + ++ +A +DLT E+++L PG Sbjct: 121 RSVLRRTKEGEEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGV 180 Query: 179 VFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 F+R++LL+ ++ VTDR +D +IK LR KL E+ + + G+GYR+ Sbjct: 181 AFTRDKLLDRVWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRFN 232 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 127/229 (55%), Gaps = 3/229 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N P IL+VED+ L Q+L L + Y TL G L R+ LI+LDLMLP Sbjct: 1 MNNP-ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRM 59 Query: 68 DGLTLCREIRRFSDI-PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 GL +C+ +R + + PI+M+TA+ + D++ GL +GADDY+ KP++ E++AR++ +LR Sbjct: 60 SGLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLR 119 Query: 127 RCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 R + Q + L ID R + LDL+ EF++L+ L G+ RE++ Sbjct: 120 RTHQSK-PSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIY 178 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ VT+RTID HI LR KLE E +I V+G GYR+ Sbjct: 179 QEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVVP 227 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 84/240 (35%), Positives = 140/240 (58%), Gaps = 5/240 (2%) Query: 5 PIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQV-LPYVRQTPPDLILLDLM 63 I N PRIL+V+D+P + LL YLR + ++ G ++ + DL++LD+M Sbjct: 9 AISPNAPRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIM 68 Query: 64 LPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKT 123 LPG DGL++ R + + P++M++A+ E+IDR++GLEIGADDY+ KP++PRE++AR++ Sbjct: 69 LPGEDGLSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRA 128 Query: 124 ILRRCKPQREL----QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 +LRR + + + ++ ID QA LDLT E++LL+ P +V Sbjct: 129 VLRRQRMEPDARGKQDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRV 188 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRI 239 +R+Q++++L R DR+ID I LRRK+E+ E ++ ++G GY + Sbjct: 189 INRDQIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSGRSP 248 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 93/232 (40%), Positives = 135/232 (58%), Gaps = 9/232 (3%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +ILIV+DE + +LL L Y G++ L V PDL++LDLMLPG Sbjct: 1 MAKEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGI 60 Query: 68 DGLTLCREIRRFSDI---PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 DGL + R IR I PI+M++AK EE D + GLE+GADDYI KP+SP+ ++AR++++ Sbjct: 61 DGLEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSV 120 Query: 125 LRRCKPQRELQQ---QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 LRR + + A S + I + GK +DLTP+EF +L L+ PG VF+ Sbjct: 121 LRRQQAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFT 180 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 R Q+++ + ++ VTDR++D I LR+KLE +I V GVGYR+ Sbjct: 181 RWQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRFR 229 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 10/231 (4%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 P ILIVEDE + +LL +L + HG++ + + DL ++D+M+P DG Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +++R S +P++ +TA+ +E DR+ GL +G DDY+ KP+S E++AR++ +LRR Sbjct: 61 FDFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTY 120 Query: 130 PQR-------ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + + ++ + + ++ + LT EF LL L G+VF+R Sbjct: 121 QRNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTR 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 E LL ++ T+RT+D+HIK LR KL+ + I+ V+G+GY+ Sbjct: 181 EHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYG---NVIQTVWGIGYKLV 228 >UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=9 Tax=Gammaproteobacteria RepID=Q4ZQ24_PSEU2 Length = 247 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 130/238 (54%), Gaps = 3/238 (1%) Query: 4 LPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLM 63 + ++ +T +LIVED+ +L +L DYL+ ++ G + PDL++LDLM Sbjct: 1 MAVEPHTWHVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLM 60 Query: 64 LPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKT 123 LPG DG ++CR +R D PI+M+TA+ ++ D + GL+ GADD++CKP PR ++AR+K Sbjct: 61 LPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKA 120 Query: 124 ILRRCKPQRELQQQDA---ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 +LRR + + + PL++D +A R + ++LT AEF LL L G+ Sbjct: 121 LLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTL 180 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 SRE++ L DR+ID I +R K+ I+ V GY + +A + Sbjct: 181 SREEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQ 238 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 95/231 (41%), Positives = 135/231 (58%), Gaps = 8/231 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 P IL+V+DE + +++ L A Y G+ L R PDLI+LDL++PG DG Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60 Query: 70 LTLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 ++CR ++R IPI+M++A+ +E+D++LGLE+GADDYI KP+SPRE+VARV LR Sbjct: 61 YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120 Query: 127 RCKPQR-----ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 R K + + + LIID+ GK L EF LL L+ +PGK FS Sbjct: 121 RDKKEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFS 180 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 R LL ++ RT+D HI+ +R+KLE L+A Q +I GVGYR+ Sbjct: 181 RYFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRF 231 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 130/230 (56%), Gaps = 4/230 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 ++++EDE + + L L T+ S G L V + DL++LDLMLP DG+ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 72 LCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +CR +R +S+ +PI+++TA+ E +R+ GL++GADDYI KP+S E++ARV I RR Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 R + + L ++ + + G+ ++LTP EF LL+ P +VF+R+ LL+ ++ Sbjct: 138 SRPVT-VLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVW 196 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV 240 V ++ HI NLR K+ E+ IR VYGVGY D +V Sbjct: 197 GFTYVGDSNIVEVHISNLREKIGDH--ERKLIRTVYGVGYTLRPDDETMV 244 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 128/228 (56%), Gaps = 4/228 (1%) Query: 7 DENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG 66 + ++ IL++EDE KL + + L Y ++ S G L PDL+LLD MLPG Sbjct: 5 EPSSAHILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPG 64 Query: 67 TDGLTLCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 GL +CR +R + +P+V++TA+ E DR GL+ GADDY+ KP+S +E+++R++ L Sbjct: 65 ISGLEICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYL 124 Query: 126 RRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 R +P+R Q LI+D + + + ++LT E+ LL+ L P +V +R+Q+ Sbjct: 125 R--QPRRSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQI 182 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 L H++ I+ +I+ LR K+E E+ I+ V GVGY Sbjct: 183 LEHVWGCDFTGDSNIIEVYIRYLRLKIEG-PGEKRLIQTVRGVGYVLR 229 >UniRef50_A9AVR8 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A9AVR8_HERA2 Length = 248 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 2/238 (0%) Query: 2 TELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLD 61 + + +IL+ +D+P + +L+ L Y +S+G + L R L+L+D Sbjct: 10 RHEDNNPHQRKILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLID 69 Query: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 +M+P DG T+ IR SD+PI+++TA+ D + G E+GADDYI KP+ E+ ARV Sbjct: 70 VMMPYIDGFTVTERIRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARV 129 Query: 122 KTILRRCKPQR--ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 + I+RR + + + L IDE R + G+ ++LTP EF LL L+ G+V Sbjct: 130 EAIIRRVEGYQHRKASPIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQV 189 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 F RE L ++ V +D ++ LR K+E ++ I V GVGY+ Sbjct: 190 FDREVLFREVWGYEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKLADGGS 247 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 76/242 (31%), Positives = 129/242 (53%), Gaps = 6/242 (2%) Query: 2 TELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLD 61 T + RIL+V+D+ +L LL +L + Q+ +++ LI+LD Sbjct: 12 TVHNETDRVERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLD 71 Query: 62 LMLPGTDGLTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 MLP DGL++CR +R+ + D PI+M+TA+ + DR+ GLE GADDY+ KP++P E++AR Sbjct: 72 FMLPVEDGLSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLAR 131 Query: 121 VKTILRRCKPQRELQ-----QQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHE 175 ++ +LRR + + + +D + G+++ LT EF +LK L Sbjct: 132 IRAVLRRQVREVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQH 191 Query: 176 PGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 P + +R++L+N +R+ID + LRR +E A +I+ V+G+GY + D Sbjct: 192 PREPLTRDKLMNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPD 251 Query: 236 AC 237 Sbjct: 252 GA 253 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 124/224 (55%), Gaps = 2/224 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+V+D+ L ++ L + Y G + L + + PDL++LD+M+P G Sbjct: 2 KEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL--RR 127 + ++IR SD+P++++TAK + +D+++GLE+GADDYI KP+ +E++AR+K IL Sbjct: 62 FEVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRRLG 121 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + PL +D + + G+ LDLTP EF++L L PG+ F+R Q+ Sbjct: 122 RREGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRAQISE 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 + + R ID HI LR K+E + I+ V VGYR Sbjct: 182 AVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 88/243 (36%), Positives = 138/243 (56%), Gaps = 4/243 (1%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M N ILIVED+P + +L+D +R++ + + + G + + + DLI+L Sbjct: 3 MAYEMAAPNQAHILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVL 62 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 D MLPG DG ++CR +R +PI+M+TA E+IDR+LGLE+GADDY+ KP++ RE++AR Sbjct: 63 DAMLPGEDGFSICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLAR 122 Query: 121 VKTILRRCKPQRELQQQD---AESPLIIDEGRFQAS-WRGKMLDLTPAEFRLLKTLSHEP 176 +K+ILRR ++ S ID Q G + +T AEF +L P Sbjct: 123 IKSILRRASYAHHQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNP 182 Query: 177 GKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236 KV +REQLL+ + +R+ID+HI +R+K+E + +FI+ V GY + + Sbjct: 183 NKVLTREQLLSMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFASKV 242 Query: 237 CRI 239 R+ Sbjct: 243 ERL 245 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 96/235 (40%), Positives = 139/235 (59%), Gaps = 8/235 (3%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 +ILIV+DE + +L+ L+ Y + G++ L ++ PDL++LDLMLPG Sbjct: 1 MPNEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGI 60 Query: 68 DGLTLCREIRRFS---DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTI 124 DG + R IR + +IPIVM+TAK EE D + GLEIGA+DYI KP+SPRE+VAR++ I Sbjct: 61 DGFEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGI 120 Query: 125 LRRCKPQRELQQQDAE--SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 LRR + Q PL +D GR + LDLT +EF++L L + G VF+R Sbjct: 121 LRRRTRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTR 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 Q+++ ++ + VT+R++D I LR+KL FI V GVGYR+ +A Sbjct: 181 GQIVDAVHGENYAVTERSVDVTIAGLRKKLGP---CADFIETVRGVGYRFREEAD 232 >UniRef50_UPI0001C164FC Two component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C164FC Length = 259 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 126/235 (53%), Gaps = 2/235 (0%) Query: 2 TELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLD 61 T I N P+I++V+D+ + L+ +L Y + G + Q P L++LD Sbjct: 21 TMDNIATNIPKIMVVDDDFSVRNLVHRFLSRK-YKTETAADGKSAMTLFEQFNPSLVILD 79 Query: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 LP +G LC++++ +++ ++M+T++ +E D++ L GADD++ KP+S EV RV Sbjct: 80 WNLPDINGYKLCQDMQNRTNVLVLMLTSRNDETDKIKVLTGGADDFMTKPFSLVEVEVRV 139 Query: 122 KTILRRCK-PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 +LRR + Q Q+ L I+ + + K L LT EF +L L+ PG+ + Sbjct: 140 NALLRRIRYIQPTQSQRLIFKQLAINPEGREVTLNDKPLALTALEFNILHFLACHPGQAW 199 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 SR QL+ ++ V R +D HI LR+K+E + FI+ V G GY++E+ Sbjct: 200 SRPQLIQKIWGCDYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKFESP 254 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 134/236 (56%), Gaps = 10/236 (4%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 N +IL VEDE + L L + + + G Q L Y+ + D I+LD+ LP Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 +G +C+++R+ P++ +TA+ +EIDR++GLEIGADDY KP+S RE+VAR+K I RR Sbjct: 62 NGFEVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRR 121 Query: 128 CKPQRE----------LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPG 177 + Q + ++ + + Q + G++L LT E+RLL L P Sbjct: 122 MEIQAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPE 181 Query: 178 KVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 KVFSR+QL++H+++ +RT+D+HIK+LR+KL+ + + IR G GY Sbjct: 182 KVFSRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSLV 237 >UniRef50_A7GA24 DNA-binding response regulator n=10 Tax=Clostridium RepID=A7GA24_CLOBL Length = 225 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 136/225 (60%), Gaps = 1/225 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 IL+++DE K+ +++ YL Y + G + L + PDL++LDLMLP G Sbjct: 2 KETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDISG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C IR+ S++PI+M+TAK E L G IG+DDYI KP+SP+++VA+V +L+R K Sbjct: 62 ENVCERIRKESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVK 121 Query: 130 PQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHL 189 + + + LIID + + K + LT +E+++L L+ P K+FSRE+L++++ Sbjct: 122 G-NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELMDYI 180 Query: 190 YDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEA 234 D + DR ID+HIKN+R KL+ ++I+ + G+GYR+ Sbjct: 181 SRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 143/238 (60%), Gaps = 7/238 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 IL++ED+P +G L+ L +A Y+ TL + G++ L + + PD+++LDL LP DG Sbjct: 1 MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 60 Query: 70 LTLCREIRR-FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR- 127 + +CR +RR + PI +VTA+ EEIDR++GLE+GADDYI KP+S RE+ RV RR Sbjct: 61 IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120 Query: 128 -----CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 KP + L ID R + + + +++++ EF +L+ ++ PGKVFSR Sbjct: 121 DKKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSR 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV 240 E +L ++ +R IDSH+K +R KLE A+ +I ++G+GYR+ + IV Sbjct: 181 EMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDNYDNIV 238 >UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AEE3 Length = 238 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 125/237 (52%), Gaps = 4/237 (1%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M TPRIL+++DE ++ L+ YL Y + +L + + DL++L Sbjct: 1 MAWEDKHMETPRILVIDDEKEICDLIEIYLSQEGYHVEKRYNAYTLLRDLEKFKIDLVIL 60 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 D+M+PG DG+ IR +IP++ V+AK + D++ GL GADDYI KP++ E+VAR Sbjct: 61 DMMMPGVDGIQALEMIREKYNIPVIFVSAKTADQDKIEGLLKGADDYIAKPFNAMELVAR 120 Query: 121 VKTILRRCKPQREL----QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEP 176 VK+ LRR + + + L+ID + S + + +T E+ +L L+ P Sbjct: 121 VKSQLRRYQVYSKPIGVDNSIIQANDLLIDTNKKMVSVDNRPVAVTKIEYEILVLLASHP 180 Query: 177 GKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 G VFS E + ++ + + TI HI+ LR K+E I V+G+GY++E Sbjct: 181 GTVFSTEDIYTKIWHEEATHANNTIMVHIRKLREKIERQPRTPRHIITVWGIGYKFE 237 >UniRef50_C6D0Z2 Two component transcriptional regulator, winged helix family n=4 Tax=Bacillales RepID=C6D0Z2_PAESJ Length = 231 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 129/231 (55%), Gaps = 9/231 (3%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 + RILI+EDE + LL L + + G L + PDL++LD MLP Sbjct: 1 MDKTRILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDR 60 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 GL +C+++ +IPI+M+TA+ + D++LGLE+GADDYI KP+ REVV R++TILRR Sbjct: 61 SGLDICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRR 120 Query: 128 CKPQREL-----QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSR 182 + +++ + +G+ +DLTP EF LL L G++F+R Sbjct: 121 LAQAQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTR 180 Query: 183 EQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 +LL ++ RT+D+HI+ LR+KL++ I V+G+GY++E Sbjct: 181 AELLESVWGYDFPGDMRTVDTHIQRLRKKLDA----ADLITTVFGIGYKFE 227 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 125/228 (54%), Gaps = 3/228 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG- 66 ILIV+DEP+L +L+ L A+ Y + G + + + DL++LD+MLPG Sbjct: 1 MKRKTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGP 60 Query: 67 TDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 +G +C+ IR FSDIPI+M+T + E DR+ G + GADDY+ KP+S E++ RVK ILR Sbjct: 61 LNGFEVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILR 120 Query: 127 RCKPQRE--LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 R P E L+I+ + + RG+ + LT E+++L L GKV + E Sbjct: 121 RSHPSEEFPKGPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVITHED 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 LL ++ + ++I +LR+K+E + +I +G+GY Sbjct: 181 LLTRVWGAEYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYL 228 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 128/233 (54%), Gaps = 6/233 (2%) Query: 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGL 70 P IL+VED+ + L+ YLRA + + G ++ + DLI++DLMLP DGL Sbjct: 15 PSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGL 74 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 +LCR++R S +PI+M+TA+ E+IDR++GLE+GADDY+ KP++PRE++AR+ +LRR Sbjct: 75 SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQAS 134 Query: 131 QRELQQQD-----AESPLIIDEGRFQAS-WRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + + +D + G + LT AEF LL+ G+V SRE Sbjct: 135 ALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSREV 194 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 LL DR+ID + +RRK+E+ A+ I+ V GY + Sbjct: 195 LLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTPVVE 247 >UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleidia extructa W1219 RepID=D2MMT6_9FIRM Length = 232 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 135/230 (58%), Gaps = 3/230 (1%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 RIL+V+DE + + L +L + ++G + L V++ DL+L+D+M+P DG+ Sbjct: 3 RILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDGVK 62 Query: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP- 130 +EIR+ +IPI+ ++AK E D++ GL IGADDYI KP+ P EV+AR+K LRR K Sbjct: 63 ATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFKEL 122 Query: 131 --QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 Q++ Q+ + +++ + GK + LTP E+ +LK P K+ + + + Sbjct: 123 GSQQKDQEVYMLGGITLNDSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQDIYQE 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 ++ + + ++ TI HI++LR K+E + +I+ V+G GY+ E+D + Sbjct: 183 VWKEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYKAESDYEK 232 >UniRef50_D1BL25 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BL25_VEIPT Length = 229 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 126/228 (55%), Gaps = 4/228 (1%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 + ILI+ED+ + + DYL A Y T++++G + TP DLI+LD+MLP DG Sbjct: 2 SEHILIIEDDLDIANIERDYLMVAGYDVTIMTNGTDGIEAALNTPVDLIILDVMLPEMDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL---- 125 +CR+IR +PIVMVTA++++ID++ GL +GADDYI KP+SP ++A++K +L Sbjct: 62 FEVCRQIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYK 121 Query: 126 RRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 R + + +D + K + L EF+LL+ L VFS+E+L Sbjct: 122 RLTERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEEL 181 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + ++ T+ HI LR ++E ++ I V+GVGY++ Sbjct: 182 YSRVWGLDSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGYKFV 229 >UniRef50_C7N3P1 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N3P1_SLAHD Length = 242 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 125/237 (52%), Gaps = 2/237 (0%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M P + P+IL+V+D+ + L+ + L +A G L + P DL+L+ Sbjct: 1 MNANPNSASRPKILVVDDDQGITTLVAEVLASAGMDAAACHSGYDALDVFAKEPFDLVLI 60 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 D+M+PG DG LC +R+ +D PIV +TAK E D ++GL +GADDYI KP+ PRE+VAR Sbjct: 61 DIMMPGMDGFELCANLRQVTDAPIVFLTAKDGESDLVVGLSLGADDYIVKPFRPRELVAR 120 Query: 121 VKTILRR-CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 ++ LR E I+ +A G LDLTP EF +L L+ G+ Sbjct: 121 IRARLRTPSAGAFEPSDVVVTRDFDINRRTHEAMLHGCRLDLTPKEFAVLLHLAERAGEP 180 Query: 180 FSREQLLNHLYDDYRVVTD-RTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 S L + + + T+ HI++LR+K +D+ Q+FI V+GVGYR Sbjct: 181 VSARDLYERAWGETYDASAGNTVMVHIRHLRKKCADVDSSQTFIDTVWGVGYRLHGP 237 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 131/227 (57%), Gaps = 4/227 (1%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+VED+ + +++ D+L + +Y+ G+ + + D+ILLDLMLP + G + Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR----C 128 + IR S +P+++ TAK + D++LGL +GADDYI KP+S E++AR+K +RR Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 129 KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNH 188 + LII+ ++ S G L+LT EF ++K L+ G+ FS+EQL N Sbjct: 123 SSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLYNA 182 Query: 189 LYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ + + +++HI LR KL + ++I+ ++G+GY+ E + Sbjct: 183 IWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKMEEE 229 >UniRef50_C6PQ36 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQ36_9CLOT Length = 233 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 131/225 (58%), Gaps = 6/225 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+V+DE + ++ L+ Y G + L V P +++LDLMLP +G Sbjct: 2 NEKILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVING 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 +C+ + +I I+M+TAK + +D++LGLE+GADDY+ KP+ RE++AR+K+++RR Sbjct: 62 YDVCKRL-EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRRLD 120 Query: 130 P---QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + L I++ + S + +L+ TP EF LL L G V+SREQ+L Sbjct: 121 KTIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSREQIL 180 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYR 231 N +++ RT+D+HI+ +R+KL + Q I+ VYG+GY+ Sbjct: 181 NIIWNMDYAGGTRTVDTHIQRIRKKLGNN--YQDLIQTVYGIGYK 223 >UniRef50_C7LZ74 Two component transcriptional regulator, winged helix family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZ74_ACIFD Length = 225 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPG-TDGL 70 +L+VED+P + LL Y ++S+G+ L L++LDL LPG DGL Sbjct: 4 HVLVVEDDPAIADLLCVYFAKEEGEVRVVSNGEDALSAFDA-SVTLVILDLNLPGRLDGL 62 Query: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 + R IR S +PI++++A+ E+DR+ GLE+GADDY+ KP+SPRE++ARV+ I RR + Sbjct: 63 EVARAIRHRSTVPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARVRAIERRVEA 122 Query: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 + + + D Q G + LT EF LL P +R +LL+ ++ Sbjct: 123 NPSSAAALSFNGVDWDPRARQVLRDGVPVALTNREFDLLGYFFAHPATALTRRELLDGVW 182 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 DRT+D H+ LR+KL A I V+GVGYR++ + Sbjct: 183 GPEWYGDDRTVDVHVLQLRKKLGGAIA----ISTVWGVGYRFDPE 223 >UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=A5UT44_ROSS1 Length = 261 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 83/238 (34%), Positives = 130/238 (54%), Gaps = 13/238 (5%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +P I+IVED P + + + +L+ ++ + + + +R+ P LI+LD++L +G Sbjct: 8 SPLIMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNG 67 Query: 70 LTLCREIR---------RFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 LCR IR R +D+PI++++A+ +E DRL G GADDY+ KP+SP E+ R Sbjct: 68 CDLCRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFR 127 Query: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 +K+ILRR L ID R + ++LTP EF LL L+ PG+VF Sbjct: 128 IKSILRRSIGLS--IACIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVF 185 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLE--SLDAEQSFIRAVYGVGYRWEADA 236 SRE+LL ++ + RT+D H+ LR KLE + + I +G GY+ E+ A Sbjct: 186 SREELLERVWGYSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLESPA 243 >UniRef50_A9AXY0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXY0_HERA2 Length = 225 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 78/208 (37%), Positives = 124/208 (59%), Gaps = 1/208 (0%) Query: 26 LIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIV 85 + YL A + L S G L V+Q P L++LDLMLP DGL + + IR+ S+ PI+ Sbjct: 18 MQLYLEQAGFTTYLASDGLAGLALVQQHQPSLVVLDLMLPKLDGLAVFKTIRQTSNTPII 77 Query: 86 MVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLII 145 MVTA+ + +R+ GLE+GADDY+ KP++ RE+VARV+ +LRR +P + Q P+ + Sbjct: 78 MVTARSSDEERIHGLELGADDYVGKPFNARELVARVRAVLRRSQPIQ-ASQMLKRGPIEL 136 Query: 146 DEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHI 205 D + + + ++L+ + LL T P ++ SREQLL ++ DR++D+HI Sbjct: 137 DLEQHSCTVNQQPVELSKIQLALLATFMRHPNQILSREQLLEAVFAGDYAGFDRSLDAHI 196 Query: 206 KNLRRKLESLDAEQSFIRAVYGVGYRWE 233 LR+++E +I VYG+GY++ Sbjct: 197 ARLRQRIEHDRTNPQYIVTVYGLGYKFV 224 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 2/228 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 TPRIL+ ED+P L L D L+ YA GD L DLILLD+MLP G Sbjct: 2 TPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSG 61 Query: 70 LTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 +C+++R +PI+M+TA+ E +D+++GL+ GADDY+ KP+ E++AR++ +LRR Sbjct: 62 FDVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRA 121 Query: 129 KPQRELQQ-QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 +R L + +D R + + GK + L+ E+RLL L G+ +RE LL Sbjct: 122 PVRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLT 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ RT+D H+ LR+KLE +++ V G+GY+ + Sbjct: 182 QVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDE 229 >UniRef50_C7S7A3 LRA-16 n=2 Tax=Bacteria RepID=C7S7A3_9BACT Length = 231 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 118/230 (51%), Positives = 157/230 (68%), Gaps = 3/230 (1%) Query: 6 IDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLP 65 + N IL+VEDE + Q+LI+YL+ + + T G V+ V+ PDLILLD+ LP Sbjct: 1 MTNNDVHILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLP 60 Query: 66 GTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125 G +GL +C+EIR FS +PI MVTA+IEEIDRLLGLE+GADDYICKP+SPREVVAR+K + Sbjct: 61 GKNGLEVCKEIRAFSTVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALF 120 Query: 126 RRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 RR + + IDE + + S++ + LDLTP E+RLLK L PG+V+SR QL Sbjct: 121 RRMQQIGVPEPTRT--GFQIDEAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYSRSQL 178 Query: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLE-SLDAEQSFIRAVYGVGYRWEA 234 L+ Y +++ DR IDSHIKNLR+K+ +L Q I AVYG+GYR+E Sbjct: 179 LDLCYQQEQLIIDRVIDSHIKNLRKKISTALPPGQEVIHAVYGIGYRFEV 228 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 136/245 (55%), Gaps = 20/245 (8%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTP--PDLILLDLMLPGTDG 69 +IL+VED + +++ + + ++ G++ + P D+I LDL LPG DG Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 70 LTLCREIRRFSDI-PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + + ++IR S + PI+M+TA+ E D++LGLE+GADDY+ KP+SP ++AR+K + RR Sbjct: 62 MQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 121 Query: 129 KPQRELQQQ--------------DAESPLIIDEGRFQASWRGKML-DLTPAEFRLLKTLS 173 + E + +A + + DLTP EF LLKTL+ Sbjct: 122 ELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLA 181 Query: 174 HEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 P +VFSREQLL ++D +RT+D+HIK LR+K+E + I+ V+GVGY+++ Sbjct: 182 KNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEVG--PQVIQTVWGVGYKFD 239 Query: 234 ADACR 238 A Sbjct: 240 DSAVN 244 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 123/233 (52%), Gaps = 5/233 (2%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 +IL+++DE + +L+ A YA G + L + PDL+++D+M+P DG Sbjct: 1 MKKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDG 60 Query: 70 LTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 T CR +R P++ ++AK + +D+ +G + G DDY+ KP+ PRE++ ++ LRR Sbjct: 61 FTTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRRA 120 Query: 129 KPQREL----QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 ++D G+F+ + G+ L LTP EF++ L+ PG V S+EQ Sbjct: 121 SMAAAPVAPRGDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQ 180 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 L+ + V +I IK LR K+E ++ I+ V+G+GYR+E + Sbjct: 181 LVEAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRFEPEGR 233 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 129/235 (54%), Gaps = 16/235 (6%) Query: 15 IVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTLCR 74 +VEDEP + + LRA Y G + + PD+++LD+MLPG DGL +CR Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 75 EIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR-- 132 ++ +P++M+TA+ +E D+L+GL +GADDY+ KP+S RE+VARV ++RR + R Sbjct: 82 RVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARAL 141 Query: 133 -----ELQQQDAE----SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 + L ID + + G + LTP EF LL L+ P V +RE Sbjct: 142 VGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTRE 201 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACR 238 +LL ++D RT+DSH+K LRRKL + +R V+GVGY +E + Sbjct: 202 KLLEEVWDWADASGTRTVDSHVKALRRKLGAD-----LVRTVHGVGYAFEPGGVQ 251 >UniRef50_C6PZ92 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ92_9CLOT Length = 235 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 5/229 (2%) Query: 9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVR-QTPPDLILLDLMLPGT 67 + +IL+VED+ ++ L+ L Y G + LI+LDLM+P Sbjct: 5 SNIKILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMVPFV 64 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DG + R +R+ S +PI++++AK E+D++ + +GADDYI KP+S E V R+K ++RR Sbjct: 65 DGFEIIRRVRQKSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIRR 124 Query: 128 C----KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSRE 183 Q + L++D +++ +TP EF +LK P KVF++ Sbjct: 125 YIYFNSEQEMHESAINYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVFTKS 184 Query: 184 QLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 Q+ + ++ + D T+ HIK LR K+E +I V+GVGY+ Sbjct: 185 QIYDSIWGQDALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYKL 233 >UniRef50_C9XJX9 Two-component system response regulator n=108 Tax=Firmicutes RepID=C9XJX9_CLODC Length = 222 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 6/223 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL++ED+ + +L+ ++L A Y + G + + +Q DL++LD+M+P DG + Sbjct: 5 ILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLDGYGV 64 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 C+ IR+ S +PI+ +TA +E D+L G ++ DDYI KP+S ++ RV+ ILRR Sbjct: 65 CKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRSNKTI 124 Query: 133 ELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDD 192 + L +D + A G+ ++LT EF +LK L + +V +RE LL+ ++ Sbjct: 125 N-DKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDSIWGY 183 Query: 193 YRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 R +D+HIKN+R+K+ +I+ V G+GY E D Sbjct: 184 DYYGDTRIVDAHIKNIRKKI-----SLPYIKTVKGIGYTLEKD 221 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 126/229 (55%), Gaps = 9/229 (3%) Query: 6 IDENTPR---ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDL 62 + + P +L+VEDEP + L+ YL + L GD L R+ P + +LD+ Sbjct: 1 MTVDAPHRGLVLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDI 60 Query: 63 MLPGTDGLTLCREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 LPG G +CR +R D P++ +TA+ +E+DR++GLE+GADDY+ KP+SPRE+VARV Sbjct: 61 ALPGLPGTEICRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARV 120 Query: 122 KTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFS 181 + +LRR + + + +D R + G + LT EF LL L PG+VF+ Sbjct: 121 RAVLRRVAGPPPGRPRI-VGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFT 179 Query: 182 REQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 RE+LL ++ RT+D H+ +R KL S IR GVGY Sbjct: 180 REELLAGVWGYAVPAGTRTVDVHVAQVRAKLGPE----SVIRTHRGVGY 224 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 305 bits (784), Expect = 7e-82, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 7/229 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 IL+ +DE + +L YL A Y + G Q L + P D+ LLD+M+P DG Sbjct: 2 PYTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 + + +R SD+P+++V+AK ++ +++LGL +GADDY+ KP++P E VARV T +RR K Sbjct: 62 YQVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLK 121 Query: 130 PQRE-----LQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQ 184 + L +D+ + G+ ++LT E+R++ PG+VF+++Q Sbjct: 122 GMAAAQPKRPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQQ 181 Query: 185 LLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 + +D+ V + ++ + LR KL E I+ + G+GYR E Sbjct: 182 IYECGWDEDYVAAENSVMVCMSRLRSKLGDDGQEA--IKTIRGLGYRLE 228 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 305 bits (784), Expect = 7e-82, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 112/234 (47%), Gaps = 7/234 (2%) Query: 5 PIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML 64 PR+L+V+DEP + L+ LR + + G + L PDL++LD+ML Sbjct: 15 ATPPRAPRVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVML 74 Query: 65 PGTDGLTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKT 123 P DG +CR +R ++ +V +TA+ D++ GL G DDYI KP++ E++ARV+ Sbjct: 75 PDADGFEVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRA 134 Query: 124 ILRRCKPQRELQQQ----DAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 +LRR + + + +D + ++L+P EF LL+ H P +V Sbjct: 135 VLRRTRRPAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRV 194 Query: 180 FSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 SR Q+L ++D +D ++ LRRKL I G GY Sbjct: 195 LSRAQILAAVWDRDFDGEPTVVDQYVSYLRRKLGQHG--PPLIHTQRGFGYALR 246 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 305 bits (784), Expect = 7e-82, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 134/244 (54%), Gaps = 13/244 (5%) Query: 2 TELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLD 61 PI+ + I++V+DEP + +LL+ L A + + G + + + +T PDLI+LD Sbjct: 6 MSKPIEAS---IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLD 62 Query: 62 LMLPGTDGLTLCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 +MLP DG T+ R IR+ P++ +TA+ + D+++GL +G DDY+ KP+S EVVAR Sbjct: 63 VMLPDIDGFTVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVAR 122 Query: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 ++ ILRR + Q E L I+E S G+ +DL+P E++LL+ L G+V Sbjct: 123 IRAILRRTQEQVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVL 182 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKL------ESLDAEQS---FIRAVYGVGYR 231 S+ Q+L+H++ ++S+I LR+K+ ++ E I G+GY Sbjct: 183 SKAQILDHVWQYDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYM 242 Query: 232 WEAD 235 A Sbjct: 243 IRAP 246 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 118/233 (50%), Gaps = 3/233 (1%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M +P + +L+VEDE L + L L ++ + G L DLILL Sbjct: 1 MICMPTPDGKGYLLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILL 60 Query: 61 DLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVAR 120 D+MLP G+ LCR IR D+PI+M+TA+ E D + GL+ GA+DY+ KP++ E+ AR Sbjct: 61 DVMLPELSGIELCRRIRETKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFAR 120 Query: 121 VKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 ++ +LR + + + Q+ L I + + + LTP EF LL + + Sbjct: 121 IRVLLR--QRESKANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAV 178 Query: 181 SREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 SREQ+L ++ + +D +I+ LR K+ES + I V G+GY Sbjct: 179 SREQILTAVWGFDFMGNTNIVDVYIRYLRNKIESDPSV-KLIHTVRGIGYTLR 230 >UniRef50_B3E8G4 Two component transcriptional regulator, winged helix family n=4 Tax=Desulfuromonadales RepID=B3E8G4_GEOLS Length = 233 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 129/228 (56%), Gaps = 2/228 (0%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 P ILIVED+ K+ +++ YL A + L P ++LDL LP G Sbjct: 2 QPPILIVEDDLKIARIIKAYLEGADFRVIHADTARAALEKAEAELPLAVILDLGLPDKSG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129 LC+E++ P++M+TAK E +R+ G +GADDY+ KP SPRE+V RVK +L+R Sbjct: 62 EELCQELKDLGSFPVIMLTAKSSEEERITGFALGADDYVVKPASPRELVYRVKAVLKRYD 121 Query: 130 PQRELQQQDAE--SPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + LI+D R + RG+ +TP EF+LL+ L+ PG+ +SR++L++ Sbjct: 122 GAGAGEHPISFNNGTLILDSRRHTVTCRGESCSVTPTEFKLLQALAASPGRTYSRDELVS 181 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 +R++D+HIKNLR+K+E + FI+ VYG+GY + + Sbjct: 182 KALGYQFDGYERSVDAHIKNLRQKIELDSRKPEFIKTVYGIGYLFSGE 229 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 127/228 (55%), Gaps = 4/228 (1%) Query: 8 ENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGT 67 E P +L++EDE + + + L A YA + G L R+ PDL++LDLMLP Sbjct: 2 ERKPLVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVL 61 Query: 68 DGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 DGL + R IR+ S+ PI+++TAK D++ GL+ GADDY+ KP+S E++ARV+ LRR Sbjct: 62 DGLEVARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRR 121 Query: 128 CKPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 P + + L+++ + G+ ++L+ EF LL+ L+ PGKVFSR ++ Sbjct: 122 VNPAVTGE--VRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEE 179 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 ++ +D +I LRRKLE E+ I V GVGY + Sbjct: 180 KVW-PEYTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLREE 225 >UniRef50_A3ERN0 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERN0_9BACT Length = 231 Score = 305 bits (783), Expect = 9e-82, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 139/225 (61%), Gaps = 7/225 (3%) Query: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 +IL++EDE + LL Y + T +G + L R PDLI+LDLMLPG DGL+ Sbjct: 4 KILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLDGLS 63 Query: 72 LCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 + R +++ + IP+V++TAK +E DR++GLE+GADDYI KP++P+E++AR+K ILRR Sbjct: 64 VNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRRT 123 Query: 129 KPQREL-QQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLN 187 + + ++ + + +++D R +A +LDLT EF LL L G+V R+ LL+ Sbjct: 124 EQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQMLLD 183 Query: 188 HLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRW 232 ++ TDRT+D HI+ LR+KL Q ++ V +GY++ Sbjct: 184 LVWGADYEGTDRTVDVHIRRLRKKLGDY---QDRVQTVKQIGYKF 225 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 131/225 (58%), Gaps = 2/225 (0%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 IL+++D+ +L +L+ +L + + G L ++Q +L ++D+M+PG +G+ L Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 73 CREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQR 132 RE+R+ S +P++M+TA+ EE+DR+LGLE+GADDY+ KP +PRE+ AR++ +LRR Q+ Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDTQQ 122 Query: 133 ELQQ--QDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 E + L + G+ +DLT E+ +L L G+V S+ +L Sbjct: 123 ESDDKQETRFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSKYELSQAAL 182 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 DRT+D HI +LR+K+ + D ++ I+ V VG+ + + Sbjct: 183 GKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFVPE 227 >UniRef50_Q8ESP1 Two-component response regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ESP1_OCEIH Length = 227 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 134/231 (58%), Gaps = 8/231 (3%) Query: 10 TPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDG 69 T I +VED+ + ++ YL+ Y T++ + + PPD+ +LD+MLPG DG Sbjct: 2 TVHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMDG 61 Query: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC- 128 C++IR SD+PI++++AK EEID++LGLE+G DDY+ KP+SPRE++ARVK + +R Sbjct: 62 YEFCKKIRNESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRST 121 Query: 129 --KPQRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLL 186 + + + L++ + + + G+ + T E+ +L L+ P + FSRE+LL Sbjct: 122 SHRQDEIEEDRVKVDQLLVYKNERRVFFEGEEFETTTKEYDMLLLLAENPNRAFSREELL 181 Query: 187 NHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADAC 237 ++ + +DR +D IK +R+K+ ++ + V+G GYR D Sbjct: 182 MKIWGNDYFGSDRAVDDLIKRIRKKMGNIP-----LETVWGFGYRLRKDEE 227 >UniRef50_C6VZ09 Two component transcriptional regulator, winged helix family n=28 Tax=Bacteroidetes RepID=C6VZ09_DYAFD Length = 236 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 9/239 (3%) Query: 1 MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILL 60 M+ + P++L+V+D+ + +LL L Y+ S+G + + + PDLILL Sbjct: 1 MSTAKSANSAPKVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILL 60 Query: 61 DLMLPGTDGLTLCREIRRFSDI---PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREV 117 D+M+P DG+ R +R+ DI I+ +TA+ EE + E+GADDYI KP PR + Sbjct: 61 DIMMPQLDGIETGRILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRAL 120 Query: 118 VARVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLD-LTPAEFRLLKTLSHEP 176 ++R+ + RR + E L I+ + + G+ L EF LL L+ P Sbjct: 121 MSRINALFRREAQKAESGDTIEILDLSINRKNYTVTQGGEKSTVLPKKEFELLFFLAQTP 180 Query: 177 GKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235 KVFSR++LL ++ V +RT+D HI+ LR KL ++I+ + GVGY + + Sbjct: 181 NKVFSRDELLQKIWGADIYVLERTVDVHIRKLREKLGD-----TYIKTLKGVGYMFSNE 234 >UniRef50_C4RGF6 Two-component system response regulator receiver n=5 Tax=Actinomycetales RepID=C4RGF6_9ACTO Length = 231 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 5/220 (2%) Query: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLTL 72 +L+VEDEP + L+ YL + L G L R+ P +LD+ LPG G + Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70 Query: 73 CREIRRFSD-IPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 CR +R D P++ +TA+ +E+DR++GLE+GADDY+ KP+SPRE+VARV+ +LRR Sbjct: 71 CRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRTVGV 130 Query: 132 RELQQQDA-ESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 E ++ P+ +D R + G+ + LT EF LL L PG+VF+R +LL ++ Sbjct: 131 PEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELLAAVW 190 Query: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 + RT+D H+ +R KL IR GVGY Sbjct: 191 GYAAHSSTRTVDVHVAQVRAKLGGAAG---VIRTHRGVGY 227 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.214 0.833 Lambda K H 0.267 0.0657 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,478,006,782 Number of Sequences: 3077464 Number of extensions: 176140873 Number of successful extensions: 510494 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 34169 Number of HSP's successfully gapped in prelim test: 16324 Number of HSP's that attempted gapping in prelim test: 400534 Number of HSP's gapped (non-prelim): 59394 length of query: 240 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 115 effective length of database: 655,713,356 effective search space: 75407035940 effective search space used: 75407035940 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.7 bits) S2: 93 (39.8 bits)