Job Description P04994 Confidence 34.17% Date Thu Jan 5 10:58:33 GMT 2012 Rank 369 Aligned Residues 79 % Identity 16% Template c3nybA_ PDB info PDB header:transferase/rna binding protein Chain: A: PDB Molecule:poly(a) rna polymerase protein 2; PDBTitle: structure and function of the polymerase core of tramp, a rna2 surveillance complex Resolution 2.70 Å

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		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.										.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.
Query Sequence		A	A	L	H	D	I	L	H	V	L	K	R	R	D	P	S	L	P	V	I	I	Y	P	A	A	V	Q	G	D	D	A	P	G	Q	I	V	R	A	I	E	L	A	N	Q	R	N	E	C	D	V	L	I	V	G	R	G	G	G	S	L	E	.	.	.	.	.	.	.	.	.	D	L	W	S	F	N	D	E	R	V
Query Conservation																																																															.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	I	S	T	I	R	E	A	V	K	Q	L	W	P	D	A	D	L	H	V	F	G	S	Y	S	T	D	L	Y	L	P	G	S	.	.	.	.	.	.	.	.	.	.	.	.	D	I	D	C	V	V	T	S	E	L	G	G	K	E	S	R	N	N	L	Y	S	L	A	S	H	L	K	K	K	N	L	A	T	E
Template Known Secondary structure													T	T		T	T							S	T	T	T	T	T				T	T	S	.	.	.	.	.	.	.	.	.	.	.	.								S	S			G	G	G															T	T	S		S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.													.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	A	I	F	T	S	R	I	P	V	V	S	A	V	G	H	E	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	V	V	A	K	A	R	V	P	I	I	K	F	V	E	P	H	S	G
Template Known Secondary structure							S	S	S									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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