18/01/2012 08:16:29 : INFO  : Run start: Wed Jan 18 08:16:28 GMT 2012
18/01/2012 08:16:35 : INFO  : Initialised job
18/01/2012 08:16:37 : INFO  : Renaming log file 'phyre2_20120118_081627.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/118b47b9a647239f/phyre_20120118_081627.log'
18/01/2012 08:16:39 : INFO  : Initialised job:
Sequence
>batch____
MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANT
PAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRK
TANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLI
LHGRYTCIARKPRCGSCIIEDLCEYKEKVDI

18/01/2012 08:16:40 : INFO  : Checked sequence
18/01/2012 08:16:44 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 08:16:45 : INFO  : PSI-BLAST 3 iterations
18/01/2012 08:18:20 : INFO  : PSI-BLAST 5 iterations
18/01/2012 08:20:08 : INFO  : Finished PSI-BLAST
18/01/2012 08:20:10 : INFO  : Running Buildali to generate a3m file
18/01/2012 08:28:48 : INFO  : Converting to HMM
18/01/2012 08:28:52 : INFO  : Calibrating HMM
18/01/2012 08:29:06 : INFO  : Searching HMM database
18/01/2012 08:34:07 : INFO  : Finished buildali
18/01/2012 08:34:08 : INFO  : Predicting secondary structure
18/01/2012 08:34:17 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 08:34:19 : INFO  : Predicting Disordered regions
18/01/2012 08:34:23 : INFO  : Predicted Disorder (Disopred)
18/01/2012 08:34:25 : INFO  : Running memsat_svm check
18/01/2012 08:37:25 : INFO  : Globular protein
18/01/2012 08:37:26 : INFO  : Predicted Transmembrane (memsat_svm) ID '118b47b9a647239f'
18/01/2012 08:37:28 : INFO  : Initialising fold library search
18/01/2012 08:37:32 : INFO  : Initialised search input
18/01/2012 08:37:34 : INFO  : Building Ensemble models
18/01/2012 08:37:38 : INFO  : Building hh.d2abka_.model.1.pdb
18/01/2012 08:37:55 : INFO  : Building d2abka_.1.pdb
18/01/2012 08:38:10 : INFO  : Building d1orna_.2.pdb
18/01/2012 08:38:25 : INFO  : Building c1rrqA_.3.pdb
18/01/2012 08:38:40 : INFO  : Building d1keaa_.4.pdb
18/01/2012 08:38:56 : INFO  : Building d1kg2a_.5.pdb
18/01/2012 08:39:11 : INFO  : Building c3n5nX_.6.pdb
18/01/2012 08:39:27 : INFO  : Building d1rrqa1.7.pdb
18/01/2012 08:39:43 : INFO  : Building d1pu6a_.8.pdb
18/01/2012 08:39:58 : INFO  : Building c3f10A_.9.pdb
18/01/2012 08:40:13 : INFO  : Building c3n0uB_.10.pdb
18/01/2012 08:40:27 : INFO  : Building c3kntC_.11.pdb
18/01/2012 08:40:43 : INFO  : Building c3s6iA_.12.pdb
18/01/2012 08:40:57 : INFO  : Building c2yg8B_.13.pdb
18/01/2012 08:41:12 : INFO  : Building c1ko9A_.14.pdb
18/01/2012 08:41:26 : INFO  : Building c1yqmA_.15.pdb
18/01/2012 08:41:40 : INFO  : Building d1mpga1.16.pdb
18/01/2012 08:41:55 : INFO  : Building c3fhgA_.17.pdb
18/01/2012 08:42:11 : INFO  : Building d1ngna_.18.pdb
18/01/2012 08:42:26 : INFO  : Building d2noha1.19.pdb
18/01/2012 08:42:40 : INFO  : Building c2jhnB_.20.pdb
18/01/2012 08:43:12 : INFO  : Finished HH model building
18/01/2012 08:43:14 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 08:44:00 : INFO  : html domain output complete ID '118b47b9a647239f'
18/01/2012 09:24:26 : INFO  : Run end  : Wed Jan 18 09:24:25 GMT 2012
