Phyre 2 alignment of P0AB83 with c1cmwA_

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Job Description | P0AB83
Confidence | 38.47% | Date | Thu Jan 5 11:14:51 GMT 2012
Rank | 111 | Aligned Residues | 29
% Identity | 45% | Template | c1cmwA_
PDB info | PDB header:transferase | Chain: A: PDB Molecule:protein (dna polymerase i); | PDBTitle: crystal structure of taq dna-polymerase shows a new2 orientation for the structure-specific nuclease domain
Resolution | 2.60 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | 120 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
Query Sequence |  | C | R | I | L | L | E | Q | H | N | G | E | V | P | E | D | R | A | A | L | E | A | L | . | . | . | . | . | . | . | . | . | . | . | P | G | V | G | R | K | T | A
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | A | W | L | W | E | K | Y | . | G | L | R | P | D | Q | W | A | D | Y | R | A | L | T | G | D | E | S | D | N | L | P | G | V | K | G | I | G | E | K | T | A
Template Known Secondary structure |  |  |  |  |  |  |  | S | S | . |  |  |  | G | G | G |  |  |  |  |  |  | T | T |  |  | S | S | S |  |  |  |  |  |  |  | S | T | T |  | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 165 | . | . | . | . | 170 | . | . |  | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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