Phyre 2 Results for P10903

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Email | l.a.kelley@imperial.ac.uk
Description | P10903
Date | Thu Jan 5 11:32:22 GMT 2012
Unique Job ID | 117a20ccf6c57a76

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1pw4a_
Top template information
Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter
Confidence and coverage
Confidence: | 100.0% | Coverage: | 91%
420 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | H | S | S | A | P | E | R | A | T | G | A | V | I | T | D | W | R | P | E | D | P | A | F | W | Q | Q | R | G | Q | R | I | A | S | R | N | L | W | I | S | V | P | C | L | L | L | A | F | C | V | W | M | L | F | S | A | V | A | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  | ? |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | N | L | P | K | V | G | F | N | F | T | T | D | Q | L | F | M | L | T | A | L | P | S | V | S | G | A | L | L | R | V | P | Y | S | F | M | V | P | I | F | G | G | R | R | W | T | A | F | S | T | G | I | L | I | I | P | C | V | W | L | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | F | A | V | Q | D | T | S | T | P | Y | S | V | F | I | I | I | S | L | L | C | G | F | A | G | A | N | F | A | S | S | M | A | N | I | S | F | F | F | P | K | Q | K | Q | G | G | A | L | G | L | N | G | G | L | G | N | M | G | V | S | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | M | Q | L | V | A | P | L | V | V | S | L | S | I | F | A | V | F | G | S | Q | G | V | K | Q | P | D | G | T | E | L | Y | L | A | N | A | S | W | I | W | V | P | F | L | A | I | F | T | I | A | A | W | F | G | M | N | D | L | A | T | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | K | A | S | I | K | E | Q | L | P | V | L | K | R | G | H | L | W | I | M | S | L | L | Y | L | A | T | F | G | S | F | I | G | F | S | A | G | F | A | M | L | S | K | T | Q | F | P | D | V | Q | I | L | Q | Y | A | F | F | G | P | F | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | G | A | L | A | R | S | A | G | G | A | L | S | D | R | L | G | G | T | R | V | T | L | V | N | F | I | L | M | A | I | F | S | G | L | L | F | L | T | L | P | T | D | G | Q | G | G | S | F | M | A | F | F | A | V | F | L | A | L | F | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | T | A | G | L | G | S | G | S | T | F | Q | M | I | S | V | I | F | R | K | L | T | M | D | R | V | K | A | E | G | G | S | D | E | R | A | M | R | E | A | A | T | D | T | A | A | A | L | G | F | I | S | A | I | G | A | I | G | G | F | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | .
Sequence |  | I | P | K | A | F | G | S | S | L | A | L | T | G | S | P | V | G | A | M | K | V | F | L | I | F | Y | I | A | C | V | V | I | T | W | A | V | Y | G | R | H | S | K | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1pw4a_ |

### PDB 1pw4 chain A

Region: 6 - 463
Aligned: 420
Modelled: 435
Confidence: 100.0%
Identity: 14%
Fold: MFS general substrate transporter
Superfamily: MFS general substrate transporter
Family: Glycerol-3-phosphate transporter

Phyre2
2 |
| c3o7pA_ |

### PDB 3o7p chain A

Region: 36 - 461
Aligned: 390
Modelled: 397
Confidence: 100.0%
Identity: 10%
PDB header:transport protein
Chain: A: PDB Molecule:l-fucose-proton symporter;
PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)

Phyre2
3 |
| d1pv7a_ |

### PDB 1pv7 chain A

Region: 31 - 462
Aligned: 403
Modelled: 404
Confidence: 100.0%
Identity: 11%
Fold: MFS general substrate transporter
Superfamily: MFS general substrate transporter
Family: LacY-like proton/sugar symporter

Phyre2
4 |
| c2gfpA_ |

### PDB 2gfp chain A

Region: 38 - 448
Aligned: 366
Modelled: 372
Confidence: 100.0%
Identity: 8%
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli

Phyre2
5 |
| c2xutC_ |

### PDB 2xut chain C

Region: 39 - 452
Aligned: 410
Modelled: 414
Confidence: 100.0%
Identity: 10%
PDB header:transport protein
Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter.

Phyre2
6 |
| c3b9yA_ |

### PDB 3b9y chain A

Region: 23 - 262
Aligned: 229
Modelled: 240
Confidence: 70.0%
Identity: 10%
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein

Phyre2
7 |
| c3hd6A_ |

### PDB 3hd6 chain A

Region: 12 - 246
Aligned: 219
Modelled: 227
Confidence: 52.1%
Identity: 13%
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg

Phyre2
8 |
| c2e8pA_ |

### PDB 2e8p chain A

Region: 2 - 28
Aligned: 27
Modelled: 27
Confidence: 18.5%
Identity: 33%
PDB header:signaling protein
Chain: A: PDB Molecule:elf3 protein;
PDBTitle: solution structure of the n-terminal sam-domain of e74-like2 factor 3

Phyre2
9 |
| c2rddB_ |

### PDB 2rdd chain B

Region: 440 - 463
Aligned: 24
Modelled: 24
Confidence: 10.5%
Identity: 13%
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:upf0092 membrane protein yajc;
PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.

Phyre2
10 |
| c2l92A_ |

### PDB 2l92 chain A

Region: 19 - 35
Aligned: 17
Modelled: 17
Confidence: 9.4%
Identity: 29%
PDB header:dna binding protein
Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns;
PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f

Phyre2
11 |
| c2g9pA_ |

### PDB 2g9p chain A

Region: 91 - 104
Aligned: 14
Modelled: 14
Confidence: 7.9%
Identity: 14%
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a;
PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom

Phyre2
12 |
| c2bbjB_ |

### PDB 2bbj chain B

Region: 394 - 460
Aligned: 67
Modelled: 67
Confidence: 7.0%
Identity: 12%
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter

Phyre2
13 |
| c3jyvT_ |

### PDB 3jyv chain T

Region: 20 - 40
Aligned: 21
Modelled: 21
Confidence: 5.9%
Identity: 19%
PDB header:ribosome
Chain: T: PDB Molecule:s19e protein;
PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution

Phyre2
14 |
| c3lgeG_ |

### PDB 3lge chain G

Region: 13 - 31
Aligned: 19
Modelled: 18
Confidence: 5.8%
Identity: 16%
PDB header:lyase/protein binding
Chain: G: PDB Molecule:sorting nexin-9;
PDBTitle: crystal structure of rabbit muscle aldolase-snx9 lc4 complex

Phyre2
15 |
| c3lgeF_ |

### PDB 3lge chain F

Region: 13 - 31
Aligned: 19
Modelled: 18
Confidence: 5.8%
Identity: 16%
PDB header:lyase/protein binding
Chain: F: PDB Molecule:sorting nexin-9;
PDBTitle: crystal structure of rabbit muscle aldolase-snx9 lc4 complex

Phyre2
16 |
| c2inpD_ |

### PDB 2inp chain D

Region: 92 - 103
Aligned: 12
Modelled: 12
Confidence: 5.5%
Identity: 25%
PDB header:oxidoreductase
Chain: D: PDB Molecule:phenol hydroxylase component phl;
PDBTitle: structure of the phenol hydroxylase-regulatory protein2 complex

Phyre2
17 |
| d2imha1 |

### PDB 2imh chain A domain 1

Region: 7 - 23
Aligned: 17
Modelled: 17
Confidence: 5.4%
Identity: 29%
Fold: Ntn hydrolase-like
Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family: SPO2555-like

Phyre2
18 |
| c3hftA_ |

### PDB 3hft chain A

Region: 13 - 29
Aligned: 17
Modelled: 17
Confidence: 5.2%
Identity: 35%
PDB header:hydrolase
Chain: A: PDB Molecule:wbms, polysaccharide deacetylase involved in o-antigen
PDBTitle: crystal structure of a putative polysaccharide deacetylase involved in2 o-antigen biosynthesis (wbms, bb0128) from bordetella bronchiseptica3 at 1.90 a resolution

Phyre2

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1pw4a_ |
|  | 100.0 | 14 | Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter
2 | c3o7pA_ |
|  | 100.0 | 10 | PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
3 | d1pv7a_ |
|  | 100.0 | 11 | Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter
4 | c2gfpA_ |
|  | 100.0 | 8 | PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
5 | c2xutC_ |
|  | 100.0 | 10 | PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter.
6 | c3b9yA_ |
|  | 70.0 | 10 | PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein
7 | c3hd6A_ |
|  | 52.1 | 13 | PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
8 | c2e8pA_ |
|  | 18.5 | 33 | PDB header:signaling protein Chain: A: PDB Molecule:elf3 protein; PDBTitle: solution structure of the n-terminal sam-domain of e74-like2 factor 3
9 | c2rddB_ |
|  | 10.5 | 13 | PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
10 | c2l92A_ |
|  | 9.4 | 29 | PDB header:dna binding protein Chain: A: PDB Molecule:histone family protein nucleoid-structuring protein h-ns; PDBTitle: solution structure of the c-terminal domain of h-ns like protein bv3f
11 | c2g9pA_ |
|  | 7.9 | 14 | PDB header:antimicrobial protein Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a; PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom
12 | c2bbjB_ |
|  | 7.0 | 12 | PDB header:metal transport/membrane protein Chain: B: PDB Molecule:divalent cation transport-related protein; PDBTitle: crystal structure of the cora mg2+ transporter
13 | c3jyvT_ |
|  | 5.9 | 19 | PDB header:ribosome Chain: T: PDB Molecule:s19e protein; PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution
14 | c3lgeG_ |
|  | 5.8 | 16 | PDB header:lyase/protein binding Chain: G: PDB Molecule:sorting nexin-9; PDBTitle: crystal structure of rabbit muscle aldolase-snx9 lc4 complex
15 | c3lgeF_ |
|  | 5.8 | 16 | PDB header:lyase/protein binding Chain: F: PDB Molecule:sorting nexin-9; PDBTitle: crystal structure of rabbit muscle aldolase-snx9 lc4 complex
16 | c2inpD_ |
|  | 5.5 | 25 | PDB header:oxidoreductase Chain: D: PDB Molecule:phenol hydroxylase component phl; PDBTitle: structure of the phenol hydroxylase-regulatory protein2 complex
17 | d2imha1 |
|  | 5.4 | 29 | Fold:Ntn hydrolase-like Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases) Family:SPO2555-like
18 | c3hftA_ |
|  | 5.2 | 35 | PDB header:hydrolase Chain: A: PDB Molecule:wbms, polysaccharide deacetylase involved in o-antigen PDBTitle: crystal structure of a putative polysaccharide deacetylase involved in2 o-antigen biosynthesis (wbms, bb0128) from bordetella bronchiseptica3 at 1.90 a resolution

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0