08/01/2012 00:35:20 : INFO  : Run start: Sun Jan  8 00:35:20 GMT 2012
08/01/2012 00:35:22 : INFO  : Initialised job
08/01/2012 00:35:23 : INFO  : Renaming log file 'phyre2_20120108_003520.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/117a20ccf6c57a76/phyre_20120108_003520.log'
08/01/2012 00:35:23 : INFO  : Initialised job:
Sequence
>batch____
MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPCLLLAFCVWMLFSAVAV
NLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGRRWTAFSTGILIIPCVWLG
FAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSV
MQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWIWVPFLAIFTIAAWFGMNDLATS
KASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPDVQILQYAFFGPFI
GALARSAGGALSDRLGGTRVTLVNFILMAIFSGLLFLTLPTDGQGGSFMAFFAVFLALFL
TAGLGSGSTFQMISVIFRKLTMDRVKAEGGSDERAMREAATDTAAALGFISAIGAIGGFF
IPKAFGSSLALTGSPVGAMKVFLIFYIACVVITWAVYGRHSKK

08/01/2012 00:35:24 : INFO  : Checked sequence
08/01/2012 00:35:25 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 00:35:26 : INFO  : PSI-BLAST 3 iterations
08/01/2012 00:38:49 : INFO  : PSI-BLAST 5 iterations
08/01/2012 00:45:18 : INFO  : Finished PSI-BLAST
08/01/2012 00:45:19 : INFO  : Running Buildali to generate a3m file
08/01/2012 01:16:43 : INFO  : Converting to HMM
08/01/2012 01:17:14 : INFO  : Calibrating HMM
08/01/2012 01:17:31 : INFO  : Searching HMM database
08/01/2012 01:28:28 : INFO  : Finished buildali
08/01/2012 01:28:28 : INFO  : Predicting secondary structure
08/01/2012 01:28:33 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 01:28:33 : INFO  : Predicting Disordered regions
08/01/2012 01:28:35 : INFO  : Predicted Disorder (Disopred)
08/01/2012 01:28:36 : INFO  : Running memsat_svm check
08/01/2012 01:31:23 : INFO  : Running memsat_svm full
08/01/2012 01:37:52 : INFO  : Predicted Transmembrane (memsat_svm) ID '117a20ccf6c57a76'
08/01/2012 01:37:53 : INFO  : Initialising fold library search
08/01/2012 01:37:55 : INFO  : Initialised search input
08/01/2012 01:37:56 : INFO  : Building Ensemble models
08/01/2012 01:38:00 : INFO  : Building hh.d1pw4a_.model.1.pdb
08/01/2012 01:38:10 : INFO  : Building hh.c3o7pA_.model.2.pdb
08/01/2012 01:38:17 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/117a20ccf6c57a76/hh.c3o7pA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/117a20ccf6c57a76/c3o7pA_.2.pdb
08/01/2012 01:38:20 : INFO  : Building hh.d1pv7a_.model.3.pdb
08/01/2012 01:38:28 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/117a20ccf6c57a76/hh.d1pv7a_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/117a20ccf6c57a76/d1pv7a_.3.pdb
08/01/2012 01:38:33 : INFO  : Building d1pw4a_.1.pdb
08/01/2012 01:38:43 : INFO  : Building c3o7pA_.2.pdb
08/01/2012 01:38:54 : INFO  : Building d1pv7a_.3.pdb
08/01/2012 01:39:04 : INFO  : Building c2gfpA_.4.pdb
08/01/2012 01:39:14 : INFO  : Building c2xutC_.5.pdb
08/01/2012 01:39:23 : INFO  : Building c3b9yA_.6.pdb
08/01/2012 01:39:30 : INFO  : Building c3hd6A_.7.pdb
08/01/2012 01:39:37 : INFO  : Building c2e8pA_.8.pdb
08/01/2012 01:39:43 : INFO  : Building c2rddB_.9.pdb
08/01/2012 01:39:50 : INFO  : Building c2l92A_.10.pdb
08/01/2012 01:39:56 : INFO  : Building c2g9pA_.11.pdb
08/01/2012 01:40:03 : INFO  : Building c2bbjB_.12.pdb
08/01/2012 01:40:11 : INFO  : Building c3jyvT_.13.pdb
08/01/2012 01:40:22 : INFO  : Building c3lgeG_.14.pdb
08/01/2012 01:40:33 : INFO  : Building c3lgeF_.15.pdb
08/01/2012 01:40:41 : INFO  : Building c2inpD_.16.pdb
08/01/2012 01:40:49 : INFO  : Building d2imha1.17.pdb
08/01/2012 01:40:58 : INFO  : Building c3hftA_.18.pdb
08/01/2012 01:41:06 : INFO  : Building c3db3A_.19.pdb
08/01/2012 01:41:14 : INFO  : Building c2dkzA_.20.pdb
08/01/2012 01:41:54 : INFO  : Finished HH model building
08/01/2012 01:41:55 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 01:42:41 : INFO  : html domain output complete ID '117a20ccf6c57a76'
08/01/2012 02:25:30 : INFO  : Run end  : Sun Jan  8 02:25:29 GMT 2012
