BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (314 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A1JIX1 tRNA pseudouridine synthase B n=327 Tax=Gammapro... 382 e-105 UniRef50_C5AH02 TRNA pseudouridine synthase B n=3 Tax=Burkholder... 347 3e-94 UniRef50_Q21H63 tRNA pseudouridine synthase B n=5 Tax=Gammaprote... 345 1e-93 UniRef50_Q1LSL0 tRNA pseudouridine synthase B n=1 Tax=Baumannia ... 343 4e-93 UniRef50_Q1GXD4 tRNA pseudouridine synthase B n=4 Tax=Betaproteo... 342 7e-93 UniRef50_A1KUJ6 tRNA pseudouridine synthase B n=5 Tax=Neisseriac... 339 5e-92 UniRef50_Q1QSZ2 tRNA pseudouridine synthase B n=3 Tax=Proteobact... 337 2e-91 UniRef50_C7GDK4 tRNA pseudouridine 55 synthase n=6 Tax=Clostridi... 337 3e-91 UniRef50_C1D8X0 TruB n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 337 3e-91 UniRef50_B3PI98 tRNA pseudouridine synthase B n=5 Tax=Gammaprote... 337 3e-91 UniRef50_A8PNK9 tRNA pseudouridine synthase B n=1 Tax=Rickettsie... 336 5e-91 UniRef50_Q2SML1 tRNA pseudouridine synthase B n=3 Tax=Gammaprote... 335 1e-90 UniRef50_A1WXU9 tRNA pseudouridine synthase B n=4 Tax=Gammaprote... 335 1e-90 UniRef50_D0L0S4 tRNA pseudouridine synthase B n=1 Tax=Halothioba... 334 3e-90 UniRef50_C0GIW2 tRNA pseudouridine synthase B n=1 Tax=Dethiobact... 333 4e-90 UniRef50_C4ZJR7 tRNA pseudouridine synthase B n=4 Tax=Betaproteo... 332 1e-89 UniRef50_A4G7S5 tRNA pseudouridine synthase B (TRNA pseudouridin... 331 2e-89 UniRef50_Q3SWP7 tRNA pseudouridine synthase B n=100 Tax=Alphapro... 330 5e-89 UniRef50_B4RMB1 tRNA pseudouridine synthase B n=20 Tax=Betaprote... 329 5e-89 UniRef50_A8FDD4 tRNA pseudouridine synthase B n=29 Tax=Bacilli R... 329 6e-89 UniRef50_C4ZBF1 tRNA pseudouridine synthase B n=9 Tax=Firmicutes... 328 1e-88 UniRef50_C4Z5P0 tRNA pseudouridine synthase B n=2 Tax=Bacteria R... 327 2e-88 UniRef50_B1XV87 tRNA pseudouridine synthase B n=2 Tax=Polynucleo... 327 4e-88 UniRef50_C6D2E9 tRNA pseudouridine synthase B n=2 Tax=Paenibacil... 326 8e-88 UniRef50_A9KNW1 tRNA pseudouridine synthase B n=6 Tax=Clostridia... 326 8e-88 UniRef50_Q3ZXU5 tRNA pseudouridine synthase B n=5 Tax=Dehalococc... 326 8e-88 UniRef50_B8FR03 tRNA pseudouridine synthase B n=2 Tax=Desulfitob... 325 1e-87 UniRef50_D1PLN1 tRNA pseudouridine synthase B n=1 Tax=Subdoligra... 325 1e-87 UniRef50_Q812X9 tRNA pseudouridine synthase B n=128 Tax=Bacilli ... 325 1e-87 UniRef50_B8I6F0 tRNA pseudouridine synthase B n=5 Tax=Clostridiu... 325 2e-87 UniRef50_Q8RA40 tRNA pseudouridine synthase B n=10 Tax=Thermoana... 324 2e-87 UniRef50_Q5WFU5 tRNA pseudouridine synthase B n=2 Tax=Bacillacea... 324 3e-87 UniRef50_UPI000178873D tRNA pseudouridine synthase B n=1 Tax=Geo... 324 4e-87 UniRef50_A5UZQ6 tRNA pseudouridine synthase B n=5 Tax=Chloroflex... 322 8e-87 UniRef50_A8MFB1 tRNA pseudouridine synthase B n=1 Tax=Alkaliphil... 322 1e-86 UniRef50_A1HSB7 TRNA pseudouridine synthase B n=1 Tax=Thermosinu... 321 2e-86 UniRef50_Q6F7I5 tRNA pseudouridine synthase B n=20 Tax=Proteobac... 321 2e-86 UniRef50_A3WPV5 TRNA pseudouridine 5S synthase n=1 Tax=Idiomarin... 320 3e-86 UniRef50_Q2BH44 TRNA pseudouridine synthase B n=1 Tax=Neptuniiba... 320 4e-86 UniRef50_Q8K9H3 tRNA pseudouridine synthase B n=4 Tax=Buchnera a... 320 4e-86 UniRef50_Q31GK3 tRNA pseudouridine synthase B n=1 Tax=Thiomicros... 320 5e-86 UniRef50_C8P7Y2 tRNA pseudouridine synthase B n=1 Tax=Lactobacil... 320 5e-86 UniRef50_UPI0000E0F5A1 tRNA pseudouridine synthase B n=1 Tax=Gla... 319 6e-86 UniRef50_A8LL26 tRNA pseudouridine synthase B n=42 Tax=Rhodobact... 319 6e-86 UniRef50_B9ZLN1 tRNA pseudouridine synthase B n=1 Tax=Thioalkali... 319 1e-85 UniRef50_C3RL16 tRNA pseudouridine synthase B n=4 Tax=Bacteria R... 318 1e-85 UniRef50_Q0SSD7 tRNA pseudouridine synthase B n=33 Tax=Clostridi... 317 4e-85 UniRef50_C0ZF47 tRNA pseudouridine synthase B n=1 Tax=Brevibacil... 317 4e-85 UniRef50_A8RZ93 Putative uncharacterized protein n=8 Tax=Clostri... 316 5e-85 UniRef50_C7I1W4 tRNA pseudouridine synthase B n=1 Tax=Thiomonas ... 316 5e-85 UniRef50_Q0AYI5 tRNA pseudouridine synthase B n=1 Tax=Syntrophom... 316 6e-85 UniRef50_C2C2D8 tRNA pseudouridine synthase B n=3 Tax=Listeria R... 316 7e-85 UniRef50_D1CFW9 tRNA pseudouridine synthase B n=1 Tax=Thermobacu... 316 8e-85 UniRef50_Q2Y7W4 tRNA pseudouridine synthase B n=3 Tax=Nitrosomon... 315 1e-84 UniRef50_C6IW07 tRNA pseudouridine synthase B n=1 Tax=Paenibacil... 314 2e-84 UniRef50_UPI0000E87C37 tRNA pseudouridine synthase B n=1 Tax=Met... 314 3e-84 UniRef50_D2MK32 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 313 4e-84 UniRef50_Q4L5X4 tRNA pseudouridine synthase B n=68 Tax=Bacilli R... 313 5e-84 UniRef50_UPI00016C0EBC tRNA pseudouridine synthase B n=1 Tax=Epu... 313 5e-84 UniRef50_Q1MZS4 TRNA pseudouridine synthase B n=1 Tax=Bermanella... 313 5e-84 UniRef50_Q18BH7 tRNA pseudouridine synthase B n=8 Tax=Clostridia... 311 2e-83 UniRef50_C0WBC5 tRNA pseudouridine synthase B n=1 Tax=Acidaminoc... 311 2e-83 UniRef50_A9IMS8 tRNA pseudouridine synthase B n=3 Tax=Bartonella... 311 3e-83 UniRef50_B0PH12 Putative uncharacterized protein n=3 Tax=Clostri... 311 3e-83 UniRef50_A5CXX8 tRNA pseudouridine synthase B n=3 Tax=Bacteria R... 310 3e-83 UniRef50_Q3A4A3 tRNA pseudouridine synthase B n=2 Tax=Desulfurom... 310 5e-83 UniRef50_B9YSP0 tRNA pseudouridine synthase B n=3 Tax=Nostocacea... 309 6e-83 UniRef50_Q98BI6 tRNA pseudouridine synthase B n=2 Tax=Mesorhizob... 309 9e-83 UniRef50_C4GBF3 Putative uncharacterized protein n=1 Tax=Shuttle... 309 9e-83 UniRef50_B0NZN2 Putative uncharacterized protein n=1 Tax=Clostri... 308 2e-82 UniRef50_A7NAR1 tRNA pseudouridine synthase B n=19 Tax=Francisel... 308 2e-82 UniRef50_Q89AF6 tRNA pseudouridine synthase B n=1 Tax=Buchnera a... 307 2e-82 UniRef50_C6MD69 tRNA pseudouridine synthase B n=1 Tax=Nitrosomon... 307 3e-82 UniRef50_Q5X1C5 tRNA pseudouridine synthase B n=4 Tax=Legionella... 306 5e-82 UniRef50_B1YI60 tRNA pseudouridine synthase B n=2 Tax=Exiguobact... 306 8e-82 UniRef50_A5VJE2 tRNA pseudouridine synthase B n=18 Tax=Lactobaci... 305 1e-81 UniRef50_A1AMM4 tRNA pseudouridine synthase B n=2 Tax=Desulfurom... 305 2e-81 UniRef50_A7VT62 Putative uncharacterized protein n=2 Tax=Bacteri... 305 2e-81 UniRef50_Q2RJM2 tRNA pseudouridine synthase B n=1 Tax=Moorella t... 304 2e-81 UniRef50_C7H6A8 tRNA pseudouridine synthase B n=2 Tax=Faecalibac... 304 2e-81 UniRef50_A8ZZ61 tRNA pseudouridine synthase B n=1 Tax=Desulfococ... 304 3e-81 UniRef50_Q057K1 TRNA pseudouridine 55 synthetase n=1 Tax=Buchner... 303 4e-81 UniRef50_A5EWY7 TRNA pseudouridine synthase B n=1 Tax=Dichelobac... 303 7e-81 UniRef50_Q01SZ5 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 302 9e-81 UniRef50_C9KKC7 tRNA pseudouridine synthase B n=3 Tax=Veillonell... 302 1e-80 UniRef50_B5YJI4 tRNA pseudouridine synthase B n=1 Tax=Thermodesu... 302 1e-80 UniRef50_Q2RMR8 tRNA pseudouridine synthase B n=11 Tax=Alphaprot... 302 1e-80 UniRef50_Q1G9Q1 tRNA pseudouridine synthase B n=27 Tax=Lactobaci... 302 1e-80 UniRef50_C8NA97 tRNA pseudouridine synthase B n=1 Tax=Cardiobact... 302 1e-80 UniRef50_A8VS66 Pseudouridine synthase-like protein n=2 Tax=Baci... 302 1e-80 UniRef50_B3WER2 tRNA pseudouridine synthase B n=9 Tax=Lactobacil... 301 2e-80 UniRef50_Q3BRP7 tRNA pseudouridine synthase B n=20 Tax=Xanthomon... 301 2e-80 UniRef50_A3VQI2 TRNA pseudouridine synthase B n=2 Tax=Alphaprote... 300 4e-80 UniRef50_A0LE16 tRNA pseudouridine synthase B n=1 Tax=Magnetococ... 300 5e-80 UniRef50_A5D2S3 tRNA pseudouridine synthase B n=3 Tax=Peptococca... 299 7e-80 UniRef50_A2RE90 tRNA pseudouridine synthase B n=24 Tax=Streptoco... 299 7e-80 UniRef50_C6P7U8 tRNA pseudouridine synthase B n=1 Tax=Thermoanae... 299 8e-80 UniRef50_A5GF89 tRNA pseudouridine synthase B n=7 Tax=Geobacter ... 299 9e-80 UniRef50_B8FCY8 tRNA pseudouridine synthase B n=1 Tax=Desulfatib... 299 1e-79 UniRef50_B8CW75 tRNA pseudouridine 55 synthase n=1 Tax=Halotherm... 299 1e-79 UniRef50_D0LZ86 tRNA pseudouridine synthase B n=1 Tax=Haliangium... 298 1e-79 UniRef50_B2A3A0 tRNA pseudouridine synthase B n=1 Tax=Natranaero... 298 2e-79 UniRef50_B0THR7 tRNA pseudouridine synthase B n=2 Tax=Heliobacte... 298 2e-79 UniRef50_D2RKW1 tRNA pseudouridine synthase B n=1 Tax=Acidaminoc... 298 2e-79 UniRef50_A4J5W9 tRNA pseudouridine synthase B n=1 Tax=Desulfotom... 298 2e-79 UniRef50_C9R8X3 tRNA pseudouridine synthase B n=1 Tax=Ammonifex ... 297 2e-79 UniRef50_Q67P83 tRNA pseudouridine synthase B n=3 Tax=Bacteria R... 297 2e-79 UniRef50_D1VSB0 tRNA pseudouridine synthase B n=1 Tax=Peptoniphi... 297 2e-79 UniRef50_A4A2R8 TRNA pseudouridine synthase B (Fragment) n=1 Tax... 297 3e-79 UniRef50_C6LME9 tRNA pseudouridine synthase B n=1 Tax=Bryantella... 297 3e-79 UniRef50_UPI00016C5566 TruB n=1 Tax=Gemmata obscuriglobus UQM 22... 296 8e-79 UniRef50_O66922 tRNA pseudouridine synthase B n=2 Tax=Aquificace... 295 1e-78 UniRef50_A5IIS7 tRNA pseudouridine synthase B n=9 Tax=Thermotoga... 295 1e-78 UniRef50_A6GNL1 tRNA pseudouridine synthase B n=2 Tax=Burkholder... 295 2e-78 UniRef50_Q38W87 tRNA pseudouridine synthase B n=3 Tax=Lactobacil... 294 2e-78 UniRef50_Q2KXZ0 tRNA pseudouridine synthase B n=2 Tax=Proteobact... 294 3e-78 UniRef50_C0QUQ5 tRNA pseudouridine synthase B n=5 Tax=Aquificale... 294 4e-78 UniRef50_A6C3H8 tRNA pseudouridine synthase B n=1 Tax=Planctomyc... 294 4e-78 UniRef50_UPI0001C373A4 tRNA pseudouridine synthase B n=1 Tax=Rum... 293 5e-78 UniRef50_Q1IPJ6 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 293 6e-78 UniRef50_Q5FQM1 tRNA pseudouridine synthase B n=9 Tax=Acetobacte... 293 7e-78 UniRef50_UPI000185BE2E tRNA pseudouridine synthase B n=1 Tax=Cor... 292 9e-78 UniRef50_C4V3N1 tRNA pseudouridine 55 synthase n=1 Tax=Selenomon... 292 1e-77 UniRef50_C7RGP3 tRNA pseudouridine synthase B n=4 Tax=Anaerococc... 292 1e-77 UniRef50_C5RBC4 Pseudouridylate synthase n=2 Tax=Lactobacillales... 292 1e-77 UniRef50_D2R7P9 tRNA pseudouridine synthase B n=1 Tax=Pirellula ... 290 3e-77 UniRef50_C2KV13 tRNA pseudouridine 55 synthase n=6 Tax=Bacteria ... 290 4e-77 UniRef50_Q1WUF2 tRNA pseudouridine synthase B n=28 Tax=Firmicute... 290 5e-77 UniRef50_A7H9F6 tRNA pseudouridine synthase B n=4 Tax=Anaeromyxo... 290 5e-77 UniRef50_C1F2Z6 tRNA pseudouridine synthase B n=1 Tax=Acidobacte... 290 5e-77 UniRef50_B7KGX7 tRNA pseudouridine synthase B n=19 Tax=Cyanobact... 289 6e-77 UniRef50_Q02Z55 tRNA pseudouridine synthase B n=21 Tax=Streptoco... 289 7e-77 UniRef50_B4WM04 tRNA pseudouridine synthase B, putative n=1 Tax=... 289 7e-77 UniRef50_Q2LWU1 tRNA pseudouridine synthase B n=1 Tax=Syntrophus... 289 8e-77 UniRef50_C6HXK4 tRNA pseudouridine synthase B n=1 Tax=Leptospiri... 289 1e-76 UniRef50_Q0C5Z2 tRNA pseudouridine synthase B n=1 Tax=Hyphomonas... 288 1e-76 UniRef50_B9KZ57 tRNA pseudouridine synthase B n=2 Tax=Thermomicr... 287 3e-76 UniRef50_C4FYS6 Putative uncharacterized protein n=1 Tax=Abiotro... 287 3e-76 UniRef50_C8WWJ2 tRNA pseudouridine synthase B n=2 Tax=Alicycloba... 286 5e-76 UniRef50_P59881 tRNA pseudouridine synthase B n=15 Tax=Cyanobact... 286 5e-76 UniRef50_Q4FVL3 tRNA pseudouridine synthase B n=10 Tax=Bacteria ... 286 5e-76 UniRef50_A9AV52 tRNA pseudouridine synthase B n=1 Tax=Herpetosip... 285 2e-75 UniRef50_B1CB51 Putative uncharacterized protein n=1 Tax=Anaerof... 284 2e-75 UniRef50_Q0EZ77 TRNA pseudouridine synthase B n=1 Tax=Mariprofun... 284 3e-75 UniRef50_B3CM19 tRNA pseudouridine synthase B n=5 Tax=Wolbachia ... 284 3e-75 UniRef50_Q5PAY2 tRNA pseudouridine synthase B n=10 Tax=Anaplasma... 283 5e-75 UniRef50_Q8R5X8 tRNA pseudouridine synthase B n=16 Tax=Fusobacte... 282 8e-75 UniRef50_B5YEH8 tRNA pseudouridine synthase B n=2 Tax=Dictyoglom... 282 1e-74 UniRef50_B8DW45 tRNA pseudouridine synthase B n=5 Tax=Bifidobact... 282 1e-74 UniRef50_B3CTX3 tRNA pseudouridine 55 synthase n=2 Tax=Orientia ... 282 1e-74 UniRef50_Q9Z5I4 tRNA pseudouridine synthase B n=3 Tax=Mycobacter... 282 1e-74 UniRef50_Q7MBB8 tRNA pseudouridine synthase B n=3 Tax=Cyanobacte... 282 1e-74 UniRef50_Q3ABA1 tRNA pseudouridine synthase B n=1 Tax=Carboxydot... 282 1e-74 UniRef50_C9LRE6 tRNA pseudouridine synthase B n=1 Tax=Dialister ... 282 2e-74 UniRef50_Q493T5 tRNA pseudouridine synthase B n=2 Tax=Candidatus... 281 2e-74 UniRef50_B9Y7W5 Putative uncharacterized protein n=1 Tax=Holdema... 281 2e-74 UniRef50_A1WLI1 tRNA pseudouridine synthase B n=103 Tax=cellular... 281 3e-74 UniRef50_D1AS76 tRNA pseudouridine synthase B n=1 Tax=Anaplasma ... 280 3e-74 UniRef50_Q8D2X8 tRNA pseudouridine synthase B n=1 Tax=Wiggleswor... 280 4e-74 UniRef50_A8SMZ3 Putative uncharacterized protein n=1 Tax=Parvimo... 280 4e-74 UniRef50_A0LHM2 tRNA pseudouridine synthase B n=1 Tax=Syntrophob... 280 5e-74 UniRef50_A6LLV6 tRNA pseudouridine synthase B n=1 Tax=Thermosiph... 279 6e-74 UniRef50_Q30WI7 tRNA pseudouridine synthase B n=4 Tax=Desulfovib... 279 8e-74 UniRef50_Q04ED7 tRNA pseudouridine synthase B n=1 Tax=Oenococcus... 279 9e-74 UniRef50_D2Q8K5 TruB tRNA pseudouridine synthase B n=6 Tax=Bifid... 278 1e-73 UniRef50_D1BM63 tRNA pseudouridine synthase B n=3 Tax=Veillonell... 278 1e-73 UniRef50_Q2G5F3 tRNA pseudouridine synthase B n=8 Tax=Sphingomon... 277 4e-73 UniRef50_A9BI94 tRNA pseudouridine synthase B n=1 Tax=Petrotoga ... 277 4e-73 UniRef50_B1ZX46 tRNA pseudouridine synthase B n=3 Tax=Verrucomic... 276 6e-73 UniRef50_C0QHM4 TruB n=1 Tax=Desulfobacterium autotrophicum HRM2... 276 7e-73 UniRef50_B6BVJ8 tRNA pseudouridine synthase B n=1 Tax=beta prote... 276 7e-73 UniRef50_Q4JV56 tRNA pseudouridine synthase B n=5 Tax=Corynebact... 275 1e-72 UniRef50_B1MZH0 tRNA pseudouridine synthase B n=3 Tax=Leuconosto... 275 1e-72 UniRef50_C0W0C7 Possible tRNA-pseudouridine synthase I n=1 Tax=A... 275 1e-72 UniRef50_B0S1E2 tRNA pseudouridine 5S synthase n=2 Tax=Finegoldi... 275 1e-72 UniRef50_Q46JB9 tRNA pseudouridine synthase B n=2 Tax=Prochloroc... 274 2e-72 UniRef50_A7BD72 Putative uncharacterized protein n=1 Tax=Actinom... 274 2e-72 UniRef50_Q8CWM3 tRNA pseudouridine synthase B n=6 Tax=Cyanobacte... 274 3e-72 UniRef50_C7R3E1 tRNA pseudouridine synthase B n=1 Tax=Jonesia de... 274 3e-72 UniRef50_D2R9Q7 tRNA pseudouridine synthase B n=1 Tax=Gardnerell... 273 5e-72 UniRef50_C0GUB0 tRNA pseudouridine synthase B n=1 Tax=Desulfonat... 273 6e-72 UniRef50_D1N2Y9 tRNA pseudouridine synthase B n=2 Tax=Lentisphae... 273 6e-72 UniRef50_P59880 tRNA pseudouridine synthase B n=2 Tax=Prochloroc... 273 6e-72 UniRef50_Q2J732 tRNA pseudouridine synthase B n=1 Tax=Frankia sp... 271 2e-71 UniRef50_B3DZL5 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 271 2e-71 UniRef50_C7NH20 tRNA pseudouridine 55 synthase n=1 Tax=Kytococcu... 270 4e-71 UniRef50_C7LXY6 tRNA pseudouridine synthase B n=1 Tax=Acidimicro... 269 7e-71 UniRef50_C1ZEI4 tRNA pseudouridine 55 synthase n=1 Tax=Planctomy... 269 8e-71 UniRef50_C2BRN4 Possible tRNA-pseudouridine synthase I n=1 Tax=M... 269 1e-70 UniRef50_C7MBA9 tRNA pseudouridine synthase B n=1 Tax=Brachybact... 268 1e-70 UniRef50_Q72ER4 tRNA pseudouridine synthase B n=10 Tax=Desulfovi... 268 2e-70 UniRef50_D1IN94 Whole genome shotgun sequence of line PN40024, s... 268 2e-70 UniRef50_D0MI93 tRNA pseudouridine synthase B n=1 Tax=Rhodotherm... 268 2e-70 UniRef50_C4LJ77 tRNA pseudouridine synthase B n=1 Tax=Corynebact... 268 2e-70 UniRef50_B6AR13 tRNA pseudouridine synthase B n=2 Tax=Leptospiri... 267 3e-70 UniRef50_Q6MMS4 tRNA pseudouridine synthase B n=1 Tax=Bdellovibr... 267 3e-70 UniRef50_Q6MD66 tRNA pseudouridine synthase B n=15 Tax=Chlamydia... 267 3e-70 UniRef50_B7ICP6 tRNA pseudouridine synthase B n=1 Tax=Thermosiph... 266 6e-70 UniRef50_A8RBN0 Putative uncharacterized protein n=2 Tax=unclass... 266 6e-70 UniRef50_Q1AW51 tRNA pseudouridine synthase B n=1 Tax=Rubrobacte... 266 9e-70 UniRef50_C1SPK2 tRNA pseudouridine 55 synthase n=1 Tax=Denitrovi... 265 1e-69 UniRef50_B9XFC5 tRNA pseudouridine synthase B n=1 Tax=bacterium ... 265 1e-69 UniRef50_Q0WVR7 tRNA synthase-like protein n=10 Tax=Magnoliophyt... 265 2e-69 UniRef50_D0WDY9 tRNA pseudouridine synthase B n=1 Tax=Slackia ex... 264 2e-69 UniRef50_A1R520 tRNA pseudouridine synthase B n=14 Tax=Actinomyc... 264 3e-69 UniRef50_C2CXC9 Possible tRNA-pseudouridine synthase I n=1 Tax=G... 264 4e-69 UniRef50_Q2NIZ2 tRNA pseudouridine synthase B n=7 Tax=Acholeplas... 263 5e-69 UniRef50_UPI000050FC6C tRNA pseudouridine synthase B n=1 Tax=Bre... 263 6e-69 UniRef50_D1AL32 tRNA pseudouridine synthase B n=1 Tax=Sebaldella... 263 6e-69 UniRef50_B0BXR2 tRNA pseudouridine synthase B n=16 Tax=Rickettsi... 262 1e-68 UniRef50_Q6AJY7 tRNA pseudouridine synthase B n=1 Tax=Desulfotal... 262 1e-68 UniRef50_B2UQ50 tRNA pseudouridine synthase B n=3 Tax=Verrucomic... 261 2e-68 UniRef50_C5NXZ4 tRNA pseudouridine synthase B n=1 Tax=Gemella ha... 261 2e-68 UniRef50_B9FM24 Putative uncharacterized protein n=1 Tax=Oryza s... 260 4e-68 UniRef50_C7MNL5 tRNA pseudouridine 55 synthase n=1 Tax=Cryptobac... 260 5e-68 UniRef50_C1E906 Predicted protein n=5 Tax=Eukaryota RepID=C1E906... 260 6e-68 UniRef50_B6GCN3 Putative uncharacterized protein n=2 Tax=Collins... 259 7e-68 UniRef50_A4XL67 tRNA pseudouridine synthase B n=1 Tax=Caldicellu... 259 9e-68 UniRef50_C2D7B6 Possible tRNA pseudouridine 55 synthase n=1 Tax=... 259 1e-67 UniRef50_C3JA73 tRNA pseudouridine synthase B n=6 Tax=Bacteria R... 258 2e-67 UniRef50_Q1NKV8 TRNA pseudouridine synthase B n=3 Tax=Deltaprote... 257 4e-67 UniRef50_B3DQF2 tRNA pseudouridine synthase B n=6 Tax=Bifidobact... 257 4e-67 UniRef50_A0QIX1 tRNA pseudouridine synthase B n=93 Tax=Actinomyc... 257 5e-67 UniRef50_C8NZL8 tRNA pseudouridine synthase B (TRNA pseudouridin... 256 8e-67 UniRef50_C7N8V4 tRNA pseudouridine synthase B n=1 Tax=Leptotrich... 255 1e-66 UniRef50_C8W716 tRNA pseudouridine synthase B n=2 Tax=Atopobium ... 254 2e-66 UniRef50_B9MR51 tRNA pseudouridine synthase B n=1 Tax=Anaerocell... 254 2e-66 UniRef50_D0RQI7 tRNA pseudouridine synthase B n=1 Tax=alpha prot... 254 3e-66 UniRef50_Q2NBZ4 TRNA pseudouridine synthase B n=1 Tax=Erythrobac... 254 3e-66 UniRef50_B1GZN9 tRNA pseudouridine synthase B n=1 Tax=uncultured... 253 6e-66 UniRef50_C2KR47 Possible tRNA-pseudouridine synthase I n=2 Tax=M... 252 9e-66 UniRef50_C9MUE6 tRNA pseudouridine synthase B n=1 Tax=Leptotrich... 252 1e-65 UniRef50_C7M8Y8 tRNA pseudouridine synthase B n=1 Tax=Capnocytop... 252 1e-65 UniRef50_Q319E0 tRNA pseudouridine synthase B n=8 Tax=Prochloroc... 252 1e-65 UniRef50_C8WI31 tRNA pseudouridine synthase B n=2 Tax=Coriobacte... 252 1e-65 UniRef50_D0NZ97 tRNA pseudouridine synthase B, putative n=1 Tax=... 250 5e-65 UniRef50_D2NNU2 Pseudouridine synthase n=2 Tax=Rothia mucilagino... 250 5e-65 UniRef50_B0MTY5 Putative uncharacterized protein n=1 Tax=Alistip... 250 5e-65 UniRef50_C8PR21 tRNA pseudouridine synthase B n=1 Tax=Treponema ... 250 6e-65 UniRef50_D0WR19 tRNA pseudouridine synthase B n=1 Tax=Actinomyce... 250 6e-65 UniRef50_C9RKT6 tRNA pseudouridine synthase B n=1 Tax=Fibrobacte... 249 7e-65 UniRef50_Q14NU4 Putative trna pseudouridine synthase b protein n... 248 2e-64 UniRef50_A4S143 Predicted protein n=3 Tax=Mamiellales RepID=A4S1... 247 3e-64 UniRef50_A6GK85 TruB (Fragment) n=1 Tax=Plesiocystis pacifica SI... 247 3e-64 UniRef50_C1XV12 tRNA pseudouridine synthase B n=1 Tax=Meiothermu... 247 3e-64 UniRef50_D1PGN2 tRNA pseudouridine synthase B n=2 Tax=Prevotella... 247 5e-64 UniRef50_A6LEL7 tRNA pseudouridine synthase B n=49 Tax=Bacteroid... 247 5e-64 UniRef50_C1A8P0 tRNA pseudouridine synthase B n=1 Tax=Gemmatimon... 246 6e-64 UniRef50_C0QZ24 Pseudouridylate synthase n=2 Tax=Brachyspira Rep... 246 7e-64 UniRef50_D1BAB8 tRNA pseudouridine synthase B n=1 Tax=Thermanaer... 245 1e-63 UniRef50_C6X4Q1 tRNA pseudouridine synthase B n=1 Tax=Flavobacte... 245 1e-63 UniRef50_UPI0000D546F1 tRNA pseudouridine synthase B n=1 Tax=Psy... 245 2e-63 UniRef50_A4AHD1 TRNA pseudouridine synthase B n=1 Tax=marine act... 244 3e-63 UniRef50_B1X5A1 Putative tRNA pseudouridine 55 synthase n=1 Tax=... 244 3e-63 UniRef50_C6W615 tRNA pseudouridine synthase B n=5 Tax=Sphingobac... 243 7e-63 UniRef50_B5ZBG4 tRNA pseudouridine synthase B n=15 Tax=Ureaplasm... 242 1e-62 UniRef50_B6YSP4 Probable tRNA pseudouridine synthase B n=13 Tax=... 242 1e-62 UniRef50_Q820Z5 tRNA pseudouridine synthase B n=2 Tax=Tropheryma... 242 1e-62 UniRef50_D1AY31 tRNA pseudouridine synthase B n=1 Tax=Streptobac... 242 1e-62 UniRef50_B2KCA4 tRNA pseudouridine synthase B n=1 Tax=Elusimicro... 242 2e-62 UniRef50_Q2SSF2 tRNA pseudouridine synthase B n=4 Tax=Mollicutes... 242 2e-62 UniRef50_Q72GS9 tRNA pseudouridine synthase B n=4 Tax=Thermaceae... 242 2e-62 UniRef50_C1H9D7 Centromere/microtubule-binding protein cbf5 n=5 ... 240 4e-62 UniRef50_D2MPT8 tRNA pseudouridine synthase B n=1 Tax=Bulleidia ... 240 5e-62 UniRef50_C7PUC9 tRNA pseudouridine synthase B n=7 Tax=Bacteroide... 239 8e-62 UniRef50_Q46GC3 Probable tRNA pseudouridine synthase B n=9 Tax=E... 239 9e-62 UniRef50_Q8WWH5 Probable tRNA pseudouridine synthase 1 n=26 Tax=... 238 1e-61 UniRef50_Q0SM48 tRNA pseudouridine synthase B n=22 Tax=Borrelia ... 238 1e-61 UniRef50_A4E6U4 Putative uncharacterized protein n=1 Tax=Collins... 238 2e-61 UniRef50_UPI00004C24EE COG0130: Pseudouridine synthase n=1 Tax=S... 237 3e-61 UniRef50_Q10KT9 Os03g0370500 protein n=6 Tax=Magnoliophyta RepID... 237 3e-61 UniRef50_Q6L1A0 Probable tRNA pseudouridine synthase B n=1 Tax=P... 237 5e-61 UniRef50_D1PVQ5 tRNA pseudouridine synthase B n=1 Tax=Prevotella... 237 5e-61 UniRef50_Q0ZC46 Putative accessory gland protein (Fragment) n=5 ... 235 1e-60 UniRef50_Q2GEU5 TRNA pseudouridine synthase B n=2 Tax=Neorickett... 235 1e-60 UniRef50_A5IY15 tRNA pseudouridine synthase B n=2 Tax=Mycoplasma... 233 4e-60 UniRef50_Q6KHH8 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 233 6e-60 UniRef50_Q2FRP0 Pseudouridylate synthase n=1 Tax=Methanospirillu... 233 8e-60 UniRef50_C3MXC6 rRNA pseudouridine synthase n=7 Tax=Sulfolobacea... 233 8e-60 UniRef50_UPI0000D53150 tRNA pseudouridine synthase B n=1 Tax=Psy... 233 8e-60 UniRef50_P33322 H/ACA ribonucleoprotein complex subunit 4 n=133 ... 232 1e-59 UniRef50_UPI0000E46C2D PREDICTED: similar to TruB pseudouridine ... 232 1e-59 UniRef50_A3MS77 Probable tRNA pseudouridine synthase B n=2 Tax=T... 232 1e-59 UniRef50_B4U903 tRNA pseudouridine synthase B n=1 Tax=Hydrogenob... 232 1e-59 UniRef50_UPI0001C31DBB tRNA pseudouridine synthase B n=1 Tax=Con... 232 2e-59 UniRef50_A4WH37 Probable tRNA pseudouridine synthase B n=36 Tax=... 232 2e-59 UniRef50_P59883 tRNA pseudouridine synthase B n=1 Tax=Rhodopirel... 231 2e-59 UniRef50_UPI000038E21C H/ACA RNA-protein complex component Cbf5p... 231 3e-59 UniRef50_C1TML1 tRNA pseudouridine 55 synthase n=1 Tax=Dethiosul... 230 7e-59 UniRef50_Q1J0C1 tRNA pseudouridine synthase B n=3 Tax=Deinococcu... 229 1e-58 UniRef50_Q73NP8 tRNA pseudouridine synthase B n=1 Tax=Treponema ... 229 1e-58 UniRef50_B6YR70 tRNA pseudouridine synthase B n=12 Tax=Bacteroid... 228 1e-58 UniRef50_C9M6R3 tRNA pseudouridine synthase B n=1 Tax=Jonquetell... 227 4e-58 UniRef50_A7I5M0 Pseudouridylate synthase n=4 Tax=Methanomicrobia... 227 4e-58 UniRef50_C5RLI7 tRNA pseudouridine synthase B n=1 Tax=Clostridiu... 227 5e-58 UniRef50_B3TBA4 Putative TruB family pseudouridylate synthase (N... 226 7e-58 UniRef50_Q9HIT4 Probable tRNA pseudouridine synthase B n=2 Tax=T... 226 1e-57 UniRef50_B1L793 Probable tRNA pseudouridine synthase B n=1 Tax=C... 225 1e-57 UniRef50_A4G0N3 Probable tRNA pseudouridine synthase B n=28 Tax=... 223 4e-57 UniRef50_A9A5A3 Pseudouridylate synthase TruB domain protein n=2... 223 5e-57 UniRef50_A6Q784 tRNA pseudouridine synthase B n=8 Tax=Epsilonpro... 223 5e-57 UniRef50_B0R686 Probable tRNA pseudouridine synthase B n=10 Tax=... 221 2e-56 UniRef50_B0VFC4 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 220 4e-56 UniRef50_D0JB32 tRNA-pseudouridine synthase I n=1 Tax=Blattabact... 220 4e-56 UniRef50_Q98Q19 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 220 6e-56 UniRef50_O44081 H/ACA ribonucleoprotein complex subunit 4 n=74 T... 219 8e-56 UniRef50_Q3B200 tRNA pseudouridine synthase B n=12 Tax=Chlorobia... 218 1e-55 UniRef50_A7ANK1 tRNA pseudouridine synthase, putative n=1 Tax=Ba... 218 2e-55 UniRef50_Q609C2 tRNA pseudouridine synthase B n=1 Tax=Methylococ... 218 2e-55 UniRef50_UPI00016A95FF tRNA pseudouridine synthase B n=1 Tax=Bur... 216 9e-55 UniRef50_Q4N5B0 TRNA pseudouridine synthase, putative n=1 Tax=Th... 215 1e-54 UniRef50_A7ZE50 tRNA pseudouridine synthase B n=3 Tax=Epsilonpro... 213 4e-54 UniRef50_A0YZZ8 TRNA pseudouridine synthase B (Fragment) n=1 Tax... 213 8e-54 UniRef50_B2S4C6 tRNA pseudouridine synthase B n=2 Tax=Treponema ... 213 9e-54 UniRef50_B0SH20 Pseudouridylate synthase, N-terminal subunit n=2... 213 9e-54 UniRef50_P60346 Probable tRNA pseudouridine synthase B n=3 Tax=A... 212 2e-53 UniRef50_Q8I715 tRNA pseudouridine synthase, putative n=7 Tax=Pl... 211 2e-53 UniRef50_C8PIZ6 tRNA pseudouridine synthase B n=1 Tax=Campylobac... 211 2e-53 UniRef50_Q8CXQ2 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 211 3e-53 UniRef50_A7GZ93 tRNA pseudouridine synthase B n=16 Tax=Campyloba... 210 4e-53 UniRef50_UPI00019786FE tRNA pseudouridine synthase B n=1 Tax=Hel... 210 5e-53 UniRef50_Q601U7 tRNA pseudouridine synthase B n=3 Tax=Mycoplasma... 209 1e-52 UniRef50_O60832 H/ACA ribonucleoprotein complex subunit 4 n=80 T... 209 1e-52 UniRef50_Q8CXU1 tRNA pseudouridine synthase B n=6 Tax=Leptospira... 208 2e-52 UniRef50_Q1CVV6 tRNA pseudouridine synthase B n=2 Tax=Cystobacte... 207 5e-52 UniRef50_Q7M9J1 tRNA pseudouridine synthase B n=3 Tax=Helicobact... 206 8e-52 UniRef50_A8BZ83 Centromere/microtubule binding protein CBF5 n=2 ... 206 1e-51 UniRef50_P59879 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 204 3e-51 UniRef50_A9UQA2 Predicted protein (Fragment) n=1 Tax=Monosiga br... 203 4e-51 UniRef50_B5Y924 tRNA pseudouridine synthase B n=1 Tax=Coprotherm... 203 5e-51 UniRef50_Q30TG2 tRNA pseudouridine synthase B n=1 Tax=Sulfurimon... 203 8e-51 UniRef50_B3PMC8 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 202 1e-50 UniRef50_B9L8F5 tRNA pseudouridine synthase B n=5 Tax=Epsilonpro... 200 4e-50 UniRef50_A9CM09 Cbf5 (Fragment) n=2 Tax=Thermofilum RepID=A9CM09... 200 4e-50 UniRef50_C5J6V5 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 199 1e-49 UniRef50_B3L1T9 Trna pseudouridine synthase, putative n=1 Tax=Pl... 198 2e-49 UniRef50_B6K5T9 tRNA pseudouridine synthase n=1 Tax=Schizosaccha... 197 4e-49 UniRef50_B9ZCE8 Pseudouridylate synthase TruB domain protein n=1... 197 4e-49 UniRef50_Q18GM5 tRNA-pseudouridine synthase n=1 Tax=Haloquadratu... 197 4e-49 UniRef50_C3XI25 tRNA pseudouridine synthase B n=1 Tax=Helicobact... 196 6e-49 UniRef50_B2VX57 tRNA pseudouridine synthase B n=2 Tax=Pleosporin... 196 8e-49 UniRef50_D1J822 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 193 5e-48 UniRef50_B8CCU3 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 191 2e-47 UniRef50_Q4A5J8 TRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 187 3e-46 UniRef50_B0CSL3 Predicted protein n=3 Tax=Agaricales RepID=B0CSL... 182 1e-44 UniRef50_C7H129 tRNA pseudouridine synthase B n=1 Tax=Eubacteriu... 175 2e-42 UniRef50_B9WH58 tRNA pseudouridine synthase, putative n=6 Tax=Sa... 173 9e-42 UniRef50_A9F237 Probable tRNA pseudouridine 55 synthase n=1 Tax=... 168 2e-40 UniRef50_A2Q7V7 Contig An01c0080, complete genome n=15 Tax=Leoti... 167 4e-40 UniRef50_B6W932 Putative uncharacterized protein n=1 Tax=Anaeroc... 167 4e-40 UniRef50_C0NFL8 Pseudouridine synthase n=12 Tax=Eurotiomycetidae... 167 5e-40 UniRef50_A2XWN3 Putative uncharacterized protein n=2 Tax=Oryza s... 166 7e-40 UniRef50_O59721 Probable tRNA pseudouridine synthase 4 n=1 Tax=S... 166 1e-39 UniRef50_Q980C3 Probable tRNA pseudouridine synthase B n=14 Tax=... 164 4e-39 UniRef50_Q6BPN6 DEHA2E12144p n=6 Tax=Saccharomycetales RepID=Q6B... 162 2e-38 UniRef50_Q4PA06 Putative uncharacterized protein n=2 Tax=Ustilag... 162 2e-38 UniRef50_C9SFT4 tRNA pseudouridine synthase B n=7 Tax=Sordariomy... 162 2e-38 UniRef50_B7Z7G5 cDNA FLJ52131, highly similar to Homo sapiens Tr... 162 2e-38 UniRef50_B9FC36 Putative uncharacterized protein n=1 Tax=Oryza s... 161 3e-38 UniRef50_O95900 Probable tRNA pseudouridine synthase 2 n=22 Tax=... 160 5e-38 UniRef50_UPI0001976FFF Pseudouridine synthase n=1 Tax=Bifidobact... 160 8e-38 UniRef50_Q6C7U6 YALI0D25234p n=1 Tax=Yarrowia lipolytica RepID=Q... 156 7e-37 UniRef50_B2W7I6 tRNA pseudouridine synthase B n=2 Tax=Pleosporin... 153 8e-36 UniRef50_D1Y7J6 tRNA pseudouridine synthase B (Fragment) n=1 Tax... 153 9e-36 UniRef50_Q5KKZ0 Pseudouridylate synthase 4, putative n=2 Tax=Fil... 153 9e-36 UniRef50_A4YCT2 PUA domain containing protein n=1 Tax=Metallosph... 148 2e-34 UniRef50_P48567 tRNA pseudouridine synthase 4 n=13 Tax=Saccharom... 148 2e-34 UniRef50_D1I9G8 Whole genome shotgun sequence of line PN40024, s... 142 2e-32 UniRef50_C3YU77 Putative uncharacterized protein n=1 Tax=Branchi... 139 1e-31 UniRef50_Q7T013 Novel protein (Zgc:91836) n=8 Tax=Clupeocephala ... 138 3e-31 UniRef50_D2VC43 Predicted protein n=1 Tax=Naegleria gruberi RepI... 138 3e-31 UniRef50_B9QMG1 tRNA pseudouridine synthase B, putative n=3 Tax=... 135 1e-30 UniRef50_A4NYM2 tRNA pseudouridine synthase B n=1 Tax=Haemophilu... 135 2e-30 UniRef50_B7QF44 Putative uncharacterized protein (Fragment) n=1 ... 133 6e-30 UniRef50_B6W931 Putative uncharacterized protein n=1 Tax=Anaeroc... 133 7e-30 UniRef50_A9BKY1 Cbf5 n=1 Tax=Cryptophyta RepID=A9BKY1_9CRYP 129 9e-29 UniRef50_B5DZE3 GA24084 n=5 Tax=Diptera RepID=B5DZE3_DROPS 129 1e-28 UniRef50_D2EFU3 PUA domain containing protein n=1 Tax=Candidatus... 129 2e-28 UniRef50_UPI0000D56069 PREDICTED: similar to AGAP002077-PA n=1 T... 129 2e-28 UniRef50_UPI00006A5396 PREDICTED: similar to TruB pseudouridine ... 126 9e-28 UniRef50_UPI000058490A PREDICTED: similar to TruB pseudouridine ... 125 2e-27 UniRef50_UPI000179347F PREDICTED: similar to CG7849 CG7849-PB n=... 124 3e-27 UniRef50_UPI0000519F9E PREDICTED: similar to CG7849-PB, isoform ... 124 5e-27 UniRef50_Q29QN4 CG7849, isoform B n=10 Tax=Drosophila RepID=Q29Q... 122 1e-26 UniRef50_Q4UE86 RNA modification (Pseudouridylation) protein Tru... 121 4e-26 UniRef50_UPI0001699077 tRNA pseudouridine synthase B n=1 Tax=End... 121 5e-26 UniRef50_UPI0000E46612 PREDICTED: similar to TruB pseudouridine ... 117 6e-25 UniRef50_B4LIK4 GJ21442 n=1 Tax=Drosophila virilis RepID=B4LIK4_... 111 3e-23 UniRef50_A8NNZ6 CG7849-PB, putative n=1 Tax=Brugia malayi RepID=... 111 3e-23 UniRef50_UPI000186DFBE conserved hypothetical protein n=1 Tax=Pe... 101 3e-20 UniRef50_Q609C4 TRNA pseudouridine synthase B, interruption-C n=... 100 8e-20 UniRef50_A8X1P5 Putative uncharacterized protein n=1 Tax=Caenorh... 96 1e-18 UniRef50_Q9N3X3 Putative uncharacterized protein n=1 Tax=Caenorh... 95 4e-18 UniRef50_B9F4Z0 Putative uncharacterized protein n=2 Tax=Oryza s... 94 6e-18 UniRef50_B7Q670 Putative uncharacterized protein n=1 Tax=Ixodes ... 94 7e-18 UniRef50_Q9SMH4 Trans-splicing factor Raa2, chloroplastic n=2 Ta... 93 1e-17 UniRef50_D0GJF7 tRNA pseudouridine synthase B (Fragment) n=1 Tax... 90 7e-17 UniRef50_Q3KMS7 TRNA pseudouridine synthase B n=1 Tax=Chlamydia ... 80 8e-14 UniRef50_Q2R1N7 Kinetochore protein, putative n=1 Tax=Oryza sati... 78 5e-13 UniRef50_A4W1P3 Pseudouridine synthase n=2 Tax=Streptococcus Rep... 75 2e-12 UniRef50_UPI0000D5432F hypothetical protein P700755_23672 n=1 Ta... 69 2e-10 UniRef50_UPI000180D082 PREDICTED: dyskerin n=1 Tax=Ciona intesti... 69 2e-10 UniRef50_A3DND5 DKCLD domain protein n=1 Tax=Staphylothermus mar... 69 2e-10 UniRef50_D1Y424 Putative uncharacterized protein n=1 Tax=Pyramid... 68 4e-10 UniRef50_Q8SVK5 Putative uncharacterized protein ECU05_0680 n=1 ... 68 6e-10 UniRef50_B9SBQ9 Centromere/microtubule binding protein cbf5, put... 67 7e-10 UniRef50_A2ARC1 TruB pseudouridine (Psi) synthase homolog 2 (E. ... 63 1e-08 UniRef50_Q2GY16 Putative uncharacterized protein n=1 Tax=Chaetom... 54 6e-06 UniRef50_A0B7V3 THUMP domain protein n=5 Tax=Methanosarcinales R... 54 7e-06 UniRef50_B7XJU4 Diaminohydroxyphosphoribosylaminopyrimidine deam... 53 2e-05 UniRef50_B9CXH0 tRNA pseudouridine synthase B (Fragment) n=1 Tax... 51 6e-05 UniRef50_D2LNT6 Pseudouridylate synthase 10-like protein n=3 Tax... 48 5e-04 UniRef50_C4QHQ2 Expressed protein n=1 Tax=Schistosoma mansoni Re... 48 6e-04 UniRef50_Q3IRF7 Putative uncharacterized protein n=1 Tax=Natrono... 46 0.002 UniRef50_UPI00019042A3 tRNA pseudouridine synthase B n=1 Tax=Rhi... 43 0.011 UniRef50_Q8TUV7 Predicted pseudouridylate synthase n=1 Tax=Metha... 43 0.021 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 41 0.043 UniRef50_Q1MPA9 Parvulin-like peptidyl-prolyl isomerase n=1 Tax=... 41 0.046 UniRef50_B1C9B9 Pseudouridine synthase n=1 Tax=Anaerofustis ster... 40 0.099 >UniRef50_A1JIX1 tRNA pseudouridine synthase B n=327 Tax=Gammaproteobacteria RepID=TRUB_YERE8 Length = 329 Score = 382 bits (982), Expect = e-105, Method: Composition-based stats. Identities = 223/312 (71%), Positives = 257/312 (82%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M RPRRRGRDINGVLLLDKP G+SSND LQKVKR+++ANRAGHTGALDPLATGMLPICLG Sbjct: 1 MGRPRRRGRDINGVLLLDKPLGLSSNDVLQKVKRLFSANRAGHTGALDPLATGMLPICLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKFSQ+LLDSDKRYRV+ARLGQRTDTSDA+G ++ ER V + Q+ AALD+FRG + Sbjct: 61 EATKFSQFLLDSDKRYRVVARLGQRTDTSDAEGALISEREVNVTQAQMDAALDSFRGSSQ 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+PSMYSALK+QGK LYEYARQGIEV REAR ITVYELLFIR EGN+LELEIHCSKGTYI Sbjct: 121 QVPSMYSALKHQGKPLYEYARQGIEVEREARSITVYELLFIRWEGNDLELEIHCSKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RTIIDDLGE LGCGAHV YLRRL V+ YP +RMVTLE L +VE A+ ++ LD L Sbjct: 181 RTIIDDLGELLGCGAHVSYLRRLQVATYPSDRMVTLEQLTAIVETAQAEERSPNAELDAL 240 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 L+PMDS ++P VNL + Y K G PV +G P EG+VR+TEGE FIG+G I ++ Sbjct: 241 LLPMDSAVLNFPEVNLLPAVAAYVKQGQPVHVAGTPGEGMVRITEGEERNFIGIGTIAED 300 Query: 301 GRVAPRRLVVEY 312 GRVAP+RLVVE+ Sbjct: 301 GRVAPKRLVVEH 312 >UniRef50_C5AH02 TRNA pseudouridine synthase B n=3 Tax=Burkholderiales RepID=C5AH02_BURGB Length = 318 Score = 347 bits (890), Expect = 3e-94, Method: Composition-based stats. Identities = 144/315 (45%), Positives = 190/315 (60%), Gaps = 19/315 (6%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 RPR R ++GVLLLDKP G+SSNDAL + KR+Y A +AGHTG LDPLA+G+LP+C GEA Sbjct: 10 RPRVPRRLLDGVLLLDKPVGLSSNDALIRAKRLYLAKKAGHTGTLDPLASGLLPLCFGEA 69 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 TKFSQ LL++DK Y RLG RT T DA+G+ +E R V + A L F G+I Q+ Sbjct: 70 TKFSQDLLEADKTYEATMRLGIRTTTGDAEGEAIETREVRVGCAAVEAVLPRFLGEIVQV 129 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALK GK LYEYAR G V RE R +T++ L + E + + CSKGTY+RT Sbjct: 130 PPMYSALKRDGKPLYEYARAGQTVEREGRNVTIHALELLACELPNVTFRVTCSKGTYVRT 189 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +D+GE LGCGAH++ LRR V +E VTL+ L + D L Sbjct: 190 LAEDIGEALGCGAHLVALRRTGVGALTLEHAVTLDALSDAQAAER----------DGWLQ 239 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG-------LVRVTEGENGKFIGMG 295 P+D+ S +P V L + F++G +R + AP G VRV + G+ +G+ Sbjct: 240 PVDALLSTFPPVRLDAEEAKRFRHGQRLRLASAPETGAHDEAGARVRVYDA-AGQLLGVA 298 Query: 296 EIDDEGRVAPRRLVV 310 + D G +AP RLVV Sbjct: 299 RLLD-GVLAPERLVV 312 >UniRef50_Q21H63 tRNA pseudouridine synthase B n=5 Tax=Gammaproteobacteria RepID=TRUB_SACD2 Length = 313 Score = 345 bits (885), Expect = 1e-93, Method: Composition-based stats. Identities = 144/319 (45%), Positives = 199/319 (62%), Gaps = 15/319 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +R GR I+GV+++DKP G SSN LQ+VKR++ AN+AGHTG+LDPLATG+LP+C G Sbjct: 1 MGNRKRPGRPISGVIVIDKPAGDSSNGVLQRVKRLFFANKAGHTGSLDPLATGVLPVCFG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 +ATKFSQ+LLDSDK Y R G+ TDT+D+DG+++E + + A+ + GDI Sbjct: 61 DATKFSQFLLDSDKEYVSTFRFGEVTDTADSDGEVLESIDASKLTKADVLKAIKAYIGDI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---ELELEIHCSK 176 +Q+P MYSALK G+ LY+ ARQGIEV RE RP+TVYE + E ++ + CSK Sbjct: 121 DQVPPMYSALKRNGQPLYKLARQGIEVEREPRPVTVYEFELLAFRPGAVAEADVRVFCSK 180 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTYIR++ D+G L G HV LRR + +++ +T+E L + ++ AE+ Sbjct: 181 GTYIRSLASDIGADLELGGHVAKLRRTQAGPFTIDQSITIEELEQ------ERGERLAEV 234 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA----PLEGLVRVTEGENGKFI 292 LD L+P D +D+P + L S+ YF G V S VRV + GKF Sbjct: 235 LDHHLLPTDIAVADFPSLELDDNSAFYFSRGQAVMDSRVYRLGDEGDKVRVFDSS-GKFY 293 Query: 293 GMGEIDDEGRVAPRRLVVE 311 G+ EI DEG VAP+RLV + Sbjct: 294 GVAEITDEGTVAPKRLVSQ 312 >UniRef50_Q1LSL0 tRNA pseudouridine synthase B n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=TRUB_BAUCH Length = 317 Score = 343 bits (881), Expect = 4e-93, Method: Composition-based stats. Identities = 156/304 (51%), Positives = 209/304 (68%), Gaps = 2/304 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +ING++LLDK +G+SSN L KVKR++ +AGHTGALDPLA+GMLPICLGEATKFS+YL Sbjct: 11 NINGIILLDKQEGLSSNYLLHKVKRLFRVQKAGHTGALDPLASGMLPICLGEATKFSKYL 70 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 LD+DKRY V A+LG++T+T DA G I+ RPVT + + ++ F GDI QIP M+S++ Sbjct: 71 LDADKRYIVSAKLGEKTNTYDATGIIINTRPVTINQAMIEHIMEQFYGDIYQIPPMFSSI 130 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 KYQG+ LY+YAR+GI +PR AR + +Y L + + +EL+IHCSKGTYIRTIIDD+GE Sbjct: 131 KYQGRALYKYARKGINIPRSARLVHIYNLQILDWDNTHIELQIHCSKGTYIRTIIDDIGE 190 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LGCGAHV LRRLAV+ Y RM+TLE L+ + A +Q L+ LL+P+DS + Sbjct: 191 LLGCGAHVTMLRRLAVAHYHTARMITLESLQTAITLALRQTPNTLVQLNKLLLPIDSAVA 250 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGK--FIGMGEIDDEGRVAPRR 307 ++P + L S + G V GLVR+ E + F G+GEI G + P+R Sbjct: 251 NFPAIKLSKDSVARVRKGQMVAVDQCWQSGLVRMCENKGETTYFFGIGEITQPGVLKPKR 310 Query: 308 LVVE 311 L+ E Sbjct: 311 LLAE 314 >UniRef50_Q1GXD4 tRNA pseudouridine synthase B n=4 Tax=Betaproteobacteria RepID=TRUB_METFK Length = 302 Score = 342 bits (879), Expect = 7e-93, Method: Composition-based stats. Identities = 147/305 (48%), Positives = 206/305 (67%), Gaps = 11/305 (3%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R R+I+GVLLLDKP G+SSN ALQ VKR+Y A +AGHTG+LDPLA+G+LPICLGEATK Sbjct: 4 KRVKRNIDGVLLLDKPLGISSNQALQMVKRLYQAAKAGHTGSLDPLASGLLPICLGEATK 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 FS +LLD+DK YR + LG T T D +G+I+ + PVT + +L A L GDI Q+P Sbjct: 64 FSHFLLDADKSYRALVTLGSTTTTGDVEGEIMTQAPVTVTQSELEAILQDMVGDILQVPP 123 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK++GK LY YAR+G+E+PR+ RP+T++ + R +G + E+ + CSKGTYIRT+ Sbjct: 124 MYSALKHEGKALYAYAREGVEIPRKPRPVTIHAIALERFDGKQFEMVVSCSKGTYIRTLA 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G +LGCGAH+ LRRL + + ++ VT+E L ++ + D +L+ + Sbjct: 184 EDIGSRLGCGAHLGGLRRLTTAHFNLKNAVTIEQLDQMSQAER----------DAVLLQV 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 D+ D+P+V L S+ Y G V SG + GL R+ E G F+G+GE G +A Sbjct: 234 DAAIEDFPIVTLDADSAFYLLQGQEVWKSGLSISGLFRLY-SEQGAFLGLGEQTSRGSIA 292 Query: 305 PRRLV 309 PRRL+ Sbjct: 293 PRRLL 297 >UniRef50_A1KUJ6 tRNA pseudouridine synthase B n=5 Tax=Neisseriaceae RepID=A1KUJ6_NEIMF Length = 319 Score = 339 bits (871), Expect = 5e-92, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 184/310 (59%), Gaps = 13/310 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+ + + R +NGVLLLDKP+G+SSN ALQK +R+++A +AGHTG LDPLATG+LP+C G Sbjct: 10 MNTGKPQKRAVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFG 69 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKF+QYLLD+DK Y +LG+ + T DA+G+I+ S + A G+I Sbjct: 70 EATKFAQYLLDADKAYTATLKLGEASSTGDAEGEIIATARADISLAEFQTACQALTGNIR 129 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+P M+SALK++GK LYEYAR+GI + R+ R ITVY + + + + + CSKGTYI Sbjct: 130 QVPPMFSALKHEGKPLYEYARKGIVIERKPRDITVYAIDIAEFDAPKAVISVRCSKGTYI 189 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT+ +D+ + +G AH+ LRR + + + + TLE L L E D L Sbjct: 190 RTLSEDIAKHIGTFAHLTALRRTETAGFTIAQSHTLEALANLNETER----------DSL 239 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+P D + +P L + + G R P + VRV ENG+F+G+ E Sbjct: 240 LLPCDVLVAHFPQTVLNDYAVHMLQCGQRPRFEEDLPSDTPVRVYT-ENGRFVGLAEYQK 298 Query: 300 E-GRVAPRRL 308 E R+ RL Sbjct: 299 EICRLKALRL 308 >UniRef50_Q1QSZ2 tRNA pseudouridine synthase B n=3 Tax=Proteobacteria RepID=TRUB_CHRSD Length = 307 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 141/312 (45%), Positives = 197/312 (63%), Gaps = 16/312 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RRRG I+GVLLLDK G+SSN ALQ+V+R+Y+A +AGHTG LDP+ATG+LP+C G Sbjct: 1 MAR-RRRGTPIDGVLLLDKAPGVSSNRALQQVRRLYDAQKAGHTGTLDPMATGLLPVCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFS YLLD+DK YR RLG+ TDT DA+G ++E V + AAL FRG++ Sbjct: 60 EATKFSAYLLDADKTYRTWVRLGEVTDTGDAEGTVIEHHSVPALDERDIEAALAGFRGEV 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 EQ+P MYSALK+QG+ LYE AR+G V R AR +TVY++ + E ELE+ CSKGTY Sbjct: 120 EQVPPMYSALKHQGRPLYELAREGKHVERAARRVTVYDMRLLSCEAEGFELEVRCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ +D+G LGCGAH+ LRRL + + M L +L + + Sbjct: 180 IRTLAEDIGHALGCGAHITSLRRLRSGPFEADAMHAFSALEDLDAASR----------EA 229 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNP--VRTSGAPLEGLVRVTEGENGKFIGMGEI 297 L+P+D+ + P + + ++S +G + T+G + R+ + F+G+ + Sbjct: 230 RLLPVDTMLTHLPSLEVAASASRRLLHGQRAQIDTAGLAAQSTARLY--RDAAFLGLVTV 287 Query: 298 DDEGRVAPRRLV 309 + G VAPRRL+ Sbjct: 288 TECGEVAPRRLL 299 >UniRef50_C7GDK4 tRNA pseudouridine 55 synthase n=6 Tax=Clostridiales RepID=C7GDK4_9FIRM Length = 321 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 172/310 (55%), Gaps = 10/310 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ + K +G +S D + K++ I + GHTG LDP A G+LP+CLG+ATK L Sbjct: 12 INGIINVYKEKGYTSFDVVAKLRGILKTKKIGHTGTLDPDAEGVLPVCLGKATKVCDLLT 71 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D +K Y + LG+ TDT D G ++EE PV + EQ+ A+ +F G+ Q+P MYSALK Sbjct: 72 DKNKEYVAVMLLGKVTDTQDTTGTVLEEHPVEVTEEQVKEAVLSFTGEYMQVPPMYSALK 131 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKL + AR G+ V R+ARP+ +Y + I+ E + + + CSKGTYIRT+ D+GEK Sbjct: 132 VNGKKLCDLARAGVTVERQARPVQLYSIEIIKMELPRVCMRVRCSKGTYIRTLCQDIGEK 191 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ--AEQQDIPAAELLDPLLMPMDSPA 248 L CGA + L R VS++ V+ + L + E V++ + Q + + +DS Sbjct: 192 LSCGACMESLLRTKVSEFCVQDALRLSEIEERVQKAAGQTQSEQWNAEMFDFIYAVDSVF 251 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGA------PLEGLVRVTEGENGKFIGMGEIDD-EG 301 Y + + NGN ++ + VR+ + E G+FIG+ E + G Sbjct: 252 LQYKKAVICKEWNKLLYNGNRMKKDMFVSYQKDWEQQKVRIYD-EEGRFIGIYEYSEIHG 310 Query: 302 RVAPRRLVVE 311 P +L +E Sbjct: 311 DYKPVKLFME 320 >UniRef50_C1D8X0 TruB n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8X0_LARHH Length = 315 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 136/318 (42%), Positives = 190/318 (59%), Gaps = 20/318 (6%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +PR R ++GVLLLDKP GM+SN ALQ+ + ++ A + GHTG LDPLATG+LP+C GEA Sbjct: 5 KPRIERRPLDGVLLLDKPCGMTSNTALQRARWMFRAQKGGHTGVLDPLATGLLPLCFGEA 64 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 TKFS +LLD+DK YR R G + T D +G+I P F EQL A + F G I+Q+ Sbjct: 65 TKFSAFLLDADKGYRATLRFGAVSSTLDREGEITPVAPPAFDREQLDAVIRDFTGVIDQV 124 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALK+QGK LYEYAR G+E+ R+ R +T++ + + +G +++ CSKGTYIRT Sbjct: 125 PPMYSALKFQGKALYEYARAGVEIERKVRQVTIHRIDLLAFDGETAVMDVACSKGTYIRT 184 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+GE+LGCGA++ LRR + + +E+ VTLE L L E D LL+ Sbjct: 185 LAADIGERLGCGAYLTDLRRTTTAGFRLEQTVTLEQLEALDESGR----------DGLLL 234 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTS---------GAPLEGLVRVTEGENGKFIG 293 P D S P V + +G P A +R+ E+G+F G Sbjct: 235 PADILVSHLPKVVVDEADFQRMTHGQPAAVDPEKAVQRDEKAATISRLRLY-AEDGRFFG 293 Query: 294 MGEIDDEGRVAPRRLVVE 311 +GEI +GR+ P R++ + Sbjct: 294 LGEIRADGRLWPDRMLAK 311 >UniRef50_B3PI98 tRNA pseudouridine synthase B n=5 Tax=Gammaproteobacteria RepID=B3PI98_CELJU Length = 319 Score = 337 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 156/322 (48%), Positives = 209/322 (64%), Gaps = 18/322 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R+GR ++GVLLL KP GM+SN ALQ+ KR++ A +AGHTG+LDPLATG+LP+C GEATK Sbjct: 3 KRKGRPVDGVLLLHKPAGMTSNQALQRAKRLFFAEKAGHTGSLDPLATGVLPLCFGEATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIP 123 FSQ+LLD+DK YR RLG TDT DADG ++E R + QL +ALD FRG+I Q+P Sbjct: 63 FSQFLLDADKGYRTCIRLGITTDTCDADGDVLETRSAAAITRAQLDSALDAFRGNILQVP 122 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---ELELEIHCSKGTYI 180 MYSALK G+ LY+ ARQG+EV RE R +T++ L + E+EL+I CSKGTYI Sbjct: 123 PMYSALKLNGQPLYKIARQGVEVEREPRAVTIHSLDVLAFRPGEVAEVELDIRCSKGTYI 182 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R+I +DLG LGCGAHV L R + ++ + LE L E+ + LD Sbjct: 183 RSIAEDLGRALGCGAHVKVLHRSLAGSFGEDQCIGLEQLEADYERG------GYDALDAH 236 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG----APLEGLVRVTEGENG----KFI 292 L+ D+P + P V+LP S+ YF+ GNPV + A +VRV E+ +F+ Sbjct: 237 LVSADAPVASLPAVDLPANSAYYFRQGNPVMDTKVYRIARQGDIVRVFCAESAQSPRQFL 296 Query: 293 GMGEIDDEGRVAPRRLVVEYPA 314 G+GEI D+GRVAP+R++ A Sbjct: 297 GLGEITDDGRVAPKRIIANRSA 318 >UniRef50_A8PNK9 tRNA pseudouridine synthase B n=1 Tax=Rickettsiella grylli RepID=A8PNK9_9COXI Length = 309 Score = 336 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 150/312 (48%), Positives = 213/312 (68%), Gaps = 13/312 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R + R I G+LLLDKP+GM+SN ALQKVK+++ A++ GHTG+LDPLATG+LP+CLG Sbjct: 1 MQALRSKKRAITGILLLDKPKGMTSNQALQKVKQLFLADKIGHTGSLDPLATGLLPLCLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 EATKFSQ+LL++DKRY V ARLG +T+T DA+G++++ P+ +S +L A L FRG I Sbjct: 61 EATKFSQFLLNADKRYVVSARLGIKTNTGDAEGEVIKSCPIADYSLNELEAILSHFRGSI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKG 177 Q P M+SALKY+G+ LY+ ARQGI V R R + ++ L + ++ L LEI CSKG Sbjct: 121 LQTPPMFSALKYKGQPLYKLARQGIVVERRPRTVKIHCLHLLESNEDKSVLSLEIKCSKG 180 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIRT+I+D+GE LGCGA+V LRRL V+ Y ++MV+L+ L+ L + + Sbjct: 181 TYIRTLIEDIGESLGCGAYVQNLRRLGVANYCADQMVSLDELQALSQNERYE-------- 232 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI 297 L+ +DS S++P+ + ++ Y G + P +GL+R+ EN +FIG+GEI Sbjct: 233 --KLLNLDSLLSEWPIFKVSQAAAYYLYCGRTLLLPNLPKQGLLRLCLKENDRFIGIGEI 290 Query: 298 DDEGRVAPRRLV 309 + GRV PRRL+ Sbjct: 291 LENGRVMPRRLI 302 >UniRef50_Q2SML1 tRNA pseudouridine synthase B n=3 Tax=Gammaproteobacteria RepID=TRUB_HAHCH Length = 311 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 147/310 (47%), Positives = 193/310 (62%), Gaps = 8/310 (2%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R R++G +NGV+++DKPQ +SN LQKVK NA +AGHTGALDPLATG+LP+C G Sbjct: 1 MAR-RKKGAPLNGVMVVDKPQDWTSNAVLQKVKYALNAQKAGHTGALDPLATGVLPLCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFSQ LLDSDK Y A LG+ T TSDADG I+ E PV S L + L FRG++ Sbjct: 60 EATKFSQLLLDSDKEYVTCAYLGRTTTTSDADGDIIAESPVPGLSVSDLESVLGKFRGNL 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +QIPSMYSALK++G LY+ ARQGIEV REAR I ++EL + + L L + CSKGTY Sbjct: 120 KQIPSMYSALKHKGTPLYKLARQGIEVEREARDIIIHELELLDYTPPFLRLRVLCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR +++D+G+ LGCGAHV+ LRR + + V + E AAE Sbjct: 180 IRNLVEDIGQVLGCGAHVMELRRTRCGPFSLADSVEFVSFAD-----ESGRQAAAEKYKE 234 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+P+DS + + L ++ G V+ S EG VR+ FIG+GE+ Sbjct: 235 RLLPIDSSVQQFSEIILDEANTGSIIQGQTVKISPLSSEGKVRLYTNRRH-FIGLGEVMS 293 Query: 300 EGRVAPRRLV 309 +G V P RL+ Sbjct: 294 DGTVKPVRLL 303 >UniRef50_A1WXU9 tRNA pseudouridine synthase B n=4 Tax=Gammaproteobacteria RepID=TRUB_HALHL Length = 304 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 150/313 (47%), Positives = 199/313 (63%), Gaps = 10/313 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M++ RR GR++ GVLL DKP G++SN ALQ+VKR++ A +AGHTG+LDPLATG+LPIC G Sbjct: 1 MAK-RRGGRNVTGVLLFDKPAGVTSNKALQQVKRLFGARKAGHTGSLDPLATGLLPICFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 +ATK S +LLD+DKRY V +LG TDT DA+G + V E + L FRG I Sbjct: 60 DATKVSGFLLDADKRYVVTCKLGVATDTGDAEGTERDRAEVPALDEEAVERGLTGFRGPI 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +Q+P MYSA+K+QG++LY+ ARQG+EV RE R + +Y+L + G+ELEL +HCSKGTY Sbjct: 120 DQLPPMYSAIKHQGQRLYDLARQGVEVEREPRRVEIYDLQLVAVRGDELELSVHCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ +D+ + LG HV LRRL + Y M T E L EQ E LD Sbjct: 180 IRTLAEDIAQALGTVGHVCALRRLGLGPYQDPAMWTEEMLAARAEQGR-------EALDA 232 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+PMDS Y V L + + G PV AP EG +R+ + G F+GMG+ D Sbjct: 233 TLLPMDSALQQYTGVELADDLAYFVVQGQPVFVPKAPSEGWLRLYD-RGGNFLGMGQALD 291 Query: 300 EGRVAPRRLVVEY 312 +GR+ P+RLV Sbjct: 292 DGRIGPKRLVARR 304 >UniRef50_D0L0S4 tRNA pseudouridine synthase B n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0S4_HALNC Length = 318 Score = 334 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 157/324 (48%), Positives = 206/324 (63%), Gaps = 22/324 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSR RRRGR+ING+LLLDKP G+SSN ALQ+VK ++ A +AGHTG+LDP ATGMLP+C G Sbjct: 1 MSR-RRRGREINGILLLDKPIGLSSNQALQRVKHLFQAAKAGHTGSLDPEATGMLPLCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 AT+ S LLD+DK YRV RLG RT+T D +G ++EERPV +AEQ+ L FRG + Sbjct: 60 HATRVSGLLLDADKTYRVTGRLGLRTETGDMEGAVIEERPVPELTAEQIETYLAPFRGLV 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +Q+P MYSALK GK+LYE AR G V R+AR I Y + + +G + +L +H SKG Y Sbjct: 120 DQVPPMYSALKVNGKRLYELARAGEVVERKARSINFYRIELLNFDGQDFDLLVHSSKGAY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE-------------RMVTLEHLRELVEQA 226 IRT+I+D+GE +GCGA V LRR+ V + E M TL+ L +L E Sbjct: 180 IRTLIEDIGEAVGCGAVVAKLRRIGVGPWLTEWPEAAGDVPAKSATMWTLDELIKLNES- 238 Query: 227 EQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEG 286 A + ++P DS YPVV L S+ + ++G+PV AP G + G Sbjct: 239 -----DAEMAIKHAILPTDSALERYPVVQLDADSAFHIRHGHPVFVPKAPQTGWFCIY-G 292 Query: 287 ENGKFIGMGEIDDEGRVAPRRLVV 310 + F+GMGE+ D+GRVAPRRL Sbjct: 293 PDDLFLGMGEVLDDGRVAPRRLFA 316 >UniRef50_C0GIW2 tRNA pseudouridine synthase B n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIW2_9FIRM Length = 294 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 174/302 (57%), Gaps = 14/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + KP GM+S++ + ++R+ + R GHTG LDP A G+LP+CLG+AT+ S+Y+L Sbjct: 1 MNGIINILKPPGMTSHNVVSFLRRLSSMRRIGHTGTLDPGAAGVLPVCLGQATRVSEYVL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 DK YR LG+ TDT DA G +V E+ V + +++ L +F G QIP MYSA+ Sbjct: 61 HMDKVYRAELTLGKSTDTEDASGTMVAEQAVPVLNKQEITKVLSSFVGQQTQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYE ARQG EV R+AR I VY + ++ + ++ ++ CS+GTY+RT+ ++ E Sbjct: 121 KVGGKKLYELARQGGEVDRKAREIHVYSMKLLQVDKQKITFDVACSRGTYVRTLCREIAE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG H+ +L R V + ++ TLE L L ++ E L +L+ D+ Sbjct: 181 KLGTVGHMSFLLRTGVGPFLLQDSFTLEELSALGQK---------ESLSAVLLSADTALG 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTS--GAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P ++L + NGN + LVR+ E +F+ +G I EGR+ P + Sbjct: 232 HLPAISLSHQQAGRVANGNTISLDTVDLSEGSLVRIY-AEKQQFLAVGRI-KEGRLKPEK 289 Query: 308 LV 309 + Sbjct: 290 VF 291 >UniRef50_C4ZJR7 tRNA pseudouridine synthase B n=4 Tax=Betaproteobacteria RepID=C4ZJR7_THASP Length = 328 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 138/309 (44%), Positives = 190/309 (61%), Gaps = 12/309 (3%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 + R R+++GVLLLDKPQGMSSN ALQ +R+ A +AGHTG LDP+A+G+LP+ GE Sbjct: 22 PQRRIVRREVDGVLLLDKPQGMSSNGALQTARRLLAAAKAGHTGTLDPMASGLLPLTFGE 81 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQ 121 ATKF+Q LLD+DK Y + RLG TD+ DA+G+++ RPV L A L+ FRG+IEQ Sbjct: 82 ATKFAQMLLDADKTYEAVVRLGVDTDSGDAEGKVLATRPVAVDRAALEAVLERFRGEIEQ 141 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 +P MYSALK GK LYEYAR GIE+ R AR + ++ L + G + +HCSKGTYIR Sbjct: 142 VPPMYSALKRDGKALYEYARAGIELERAARRVVIHALELLDFAGERFTIRVHCSKGTYIR 201 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 ++ D+G LGCGAH+ LRR A+ + + +TLE L E D LL Sbjct: 202 SLAMDIGAALGCGAHLAALRRTAIGAFDLSGALTLEALEAAGEGGR----------DALL 251 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 P+D+ + +PV+ L ++ G + +GA VR G F+G+ + D+G Sbjct: 252 APVDALVAGFPVLQLDAEAARGLLQGRTLALAGAQPGAKVRAYGP--GGFLGLAQWQDDG 309 Query: 302 RVAPRRLVV 310 R+A RRL+ Sbjct: 310 RLAARRLIA 318 >UniRef50_A4G7S5 tRNA pseudouridine synthase B (TRNA pseudouridine 55 synthase) (Psi55 synthase) (TRNA-uridine isomerase) (TRNA pseudouridylate synthase) n=5 Tax=Burkholderiales RepID=A4G7S5_HERAR Length = 314 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 184/310 (59%), Gaps = 15/310 (4%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +++ ++GVLLLDK G+SSNDAL K K + NA +AGHTG LDP ATG+LP+C GEATK Sbjct: 7 KKKRVPVHGVLLLDKQAGVSSNDALIKAKWLLNALKAGHTGTLDPFATGLLPLCFGEATK 66 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 F+Q LLD+DK Y + LG T+T D +G ++ V S +Q+ A L FRGDIEQ+P Sbjct: 67 FAQDLLDADKTYETVVHLGVTTNTGDTEGDVIATHAVDISRQQIDAVLAQFRGDIEQVPP 126 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK GK LYEYAR GI + REARP+T++ L F+ + L L + CSKGTYIR + Sbjct: 127 MYSALKRDGKPLYEYARAGITLEREARPVTIHLLEFVDFQAPFLTLRVRCSKGTYIRVLG 186 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G LGCGAH+ LRR+ V + + +T+E L A L + Sbjct: 187 EDIGAALGCGAHLNALRRIQVGDLLIAQAITIEELTAKDADARI----------AALASV 236 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL-----EGLVRVTEGENGKFIGMGEIDD 299 D+ + +P + L + F +G + + +G +R+ +G+ +G G + + Sbjct: 237 DALLTSFPALRLSEELAKRFLHGQRLALGKENIVLPEGQGRMRIYRESDGQLLGTGLMQE 296 Query: 300 EGRVAPRRLV 309 +AP RL+ Sbjct: 297 YSILAPERLI 306 >UniRef50_Q3SWP7 tRNA pseudouridine synthase B n=100 Tax=Alphaproteobacteria RepID=TRUB_NITWN Length = 358 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 167/310 (53%), Gaps = 7/310 (2%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 ++PRR RD++G + LDKP GM+S A+ VKR+++A RAGH G LDPLA+G LPI LGE Sbjct: 41 NQPRRDKRDVHGWVALDKPVGMTSTQAVAVVKRLFSAKRAGHAGTLDPLASGGLPIALGE 100 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQ 121 ATK +++D KRYR G+ DT D +G+ V +AE + A L +F G IEQ Sbjct: 101 ATKTVPFVMDGRKRYRFTVAWGEERDTDDTEGRAVATSAERPTAEAIMALLPSFTGKIEQ 160 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGTYI 180 IP YSA+K QG++ Y+ AR G VP RP+ ++ L H + E C KGTY+ Sbjct: 161 IPPQYSAVKIQGERAYDLARDGEVVPLAPRPVEIHHLNLADHQDSGHSVFEAECGKGTYV 220 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + D+G LGC H+ LRR V + M+ LEHL+ L ++A + L Sbjct: 221 RALARDMGRLLGCYGHICALRRTLVGPFDETSMIPLEHLQALCDRAASGEGN----LADA 276 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV-RVTEGENGKFIGMGEIDD 299 L+P+++ D P + + + G V G + V G+ + + E+ Sbjct: 277 LLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPNMSGTVYVTVAGRLLALAEL-G 335 Query: 300 EGRVAPRRLV 309 G + P+R+ Sbjct: 336 NGELIPKRVF 345 >UniRef50_B4RMB1 tRNA pseudouridine synthase B n=20 Tax=Betaproteobacteria RepID=TRUB_NEIG2 Length = 306 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 124/297 (41%), Positives = 175/297 (58%), Gaps = 12/297 (4%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + R +NGVLLLDKP+G+SSN ALQK +R+++A +AGHTG LDPLATG+LP+C GEA K Sbjct: 4 KPAKRPVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEAAK 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 F+QYLLD+DK Y +LG+ + T DA+G+I+ S + A G+I Q+P Sbjct: 64 FAQYLLDADKAYTATLKLGEASSTGDAEGEIIAAARADISLAEFQTACQALTGNIRQVPP 123 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 M+SALK++GK LYEYAR+GI + R+ R ITVY + + + + + CSKGTYIRT+ Sbjct: 124 MFSALKHEGKPLYEYARKGIVIERKPRDITVYSIDIAEFDAPKAVISVRCSKGTYIRTLS 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 + + + +G AH+ LRR + + + + TLE L L E D LL+P Sbjct: 184 EGIAKHIGTFAHLTALRRTETAGFTIAQSHTLEALANLDETER----------DNLLLPC 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEIDDE 300 D S +P L + + G R P + VRV ENG+F+G+ E E Sbjct: 234 DVLVSHFPQTVLNDYAVHMLQCGQRPRFEEDLPSDTPVRVYT-ENGRFVGLAEYQKE 289 >UniRef50_A8FDD4 tRNA pseudouridine synthase B n=29 Tax=Bacilli RepID=TRUB_BACP2 Length = 309 Score = 329 bits (845), Expect = 6e-89, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 173/314 (55%), Gaps = 23/314 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 INGVLLL K +GM+S+D + KV++I + + GHTG LDP +G+LPIC+G ATK +YL Sbjct: 2 INGVLLLHKERGMTSHDCVFKVRKILHTKKVGHTGTLDPEVSGVLPICIGRATKIVEYLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 D K Y +G T T D G+IVEE+ V S E++ AAL F+G IEQIP M+SA Sbjct: 62 DKSKTYDAEITIGFSTTTEDQTGEIVEEKKVQNPISEEEIDAALKQFQGTIEQIPPMFSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELL-----FIRHEGNELELEIHCSKGTYIRTI 183 +K GKKLYEYAR+GIE+ R +R I+++ + + + CSKGTY+RT+ Sbjct: 122 VKIGGKKLYEYAREGIEIERPSREISIHRIERTTPALFENGTVSFRFTVLCSKGTYVRTL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D+G+KLG AH+ +L R + ++ +TL+ LR++ E+ +D L+P Sbjct: 182 AVDIGKKLGFPAHMSHLIRTGSGDFTLDECITLDELRDISEEG---------TVDEHLVP 232 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSG----APLEGLVRVTEGENGKFIGMG--EI 297 ++ + P + T + +NG + E V V +G+ + + Sbjct: 233 IERALNHLPKWEINDTLASKVENGAVLPMPDEFAHFAEEDRVAVF-APSGRCMAIYMKHP 291 Query: 298 DDEGRVAPRRLVVE 311 + + P +++ + Sbjct: 292 TKQNLMKPAKILSQ 305 >UniRef50_C4ZBF1 tRNA pseudouridine synthase B n=9 Tax=Firmicutes RepID=C4ZBF1_EUBR3 Length = 299 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 173/309 (55%), Gaps = 19/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + K +G +S D + K++ I++ + GHTG LDP A G+LP+CLG+AT+ L Sbjct: 2 VNGIINVYKEKGYTSFDVVAKLRGIFHQKKIGHTGTLDPDAQGVLPVCLGKATRVCDLLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK Y+ + LGQ TDT D GQ++ + V + + + A+ F G +Q+P MYSALK Sbjct: 62 DKDKVYKAVLLLGQETDTQDISGQVLNQAKVNVTEQAVYDAISQFIGRQKQVPPMYSALK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYE AR+G + R+AR I V+++ + E+ + +HCSKGTYIRT+ +D+GE+ Sbjct: 122 VNGKKLYELAREGKVIERKARDIEVFDIKVESIDLPEVTMTVHCSKGTYIRTLCNDIGER 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC + L R+ V+ + +E +TL ++ V++ ++MP+D + Sbjct: 182 LGCHGCMKSLLRVRVAGFDLEHALTLSQIQSKVDEGCFD----------MVMPVDGVFEN 231 Query: 251 YPVVNLPLTSSVYFKNGNPVRT-------SGAPLEGLVRVTEGENGKFIGMGEIDDE-GR 302 P V+ + +NGN + A + RV E G F+G+ DE G Sbjct: 232 LPAVHTASDADKLVRNGNKIPAVLTDYLKHSADSDIRYRVYNHE-GIFVGVYSYLDETGE 290 Query: 303 VAPRRLVVE 311 P ++ +E Sbjct: 291 FKPVKIFME 299 >UniRef50_C4Z5P0 tRNA pseudouridine synthase B n=2 Tax=Bacteria RepID=C4Z5P0_EUBE2 Length = 303 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 167/311 (53%), Gaps = 21/311 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVL + K QG +S+D + K++ I + GHTG LDP A G+LP+C+G+ATK + Sbjct: 1 MNGVLNVYKEQGFTSHDVVAKLRGILKTKKIGHTGTLDPDAVGVLPVCIGKATKLCDLIT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K Y + LG TDT D G+IV + V S + + F G+ EQIP MYSALK Sbjct: 61 DWGKTYEAVMLLGTTTDTLDISGKIVAQSEVNVSEVDVLKVCNEFIGEYEQIPPMYSALK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIIDD 186 Y G+KLYE AR+GIE+ R+ R + + L + + + + CSKGTYIR++ DD Sbjct: 121 YNGQKLYELARKGIEIERKPRTVHINTLRVNDINLSDKQKTVTITVDCSKGTYIRSLCDD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G+KLGCGA ++ L R V ++ ++ +TL + LV + E ++ + +D Sbjct: 181 IGKKLGCGACMMKLTRTRVGEFMLDDTLTLNQISALVLKGE---------IEDRITGIDK 231 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE------GLVRVTEGENGKFIGMGEIDDE 300 SDY + S Y NGN + P + RV + + FIG+ E DE Sbjct: 232 IFSDYQEIKFAEEYSRYLHNGNKLSREQIPADAAISDNEKYRVYDS-DKCFIGVYEFRDE 290 Query: 301 GRVAPRRLVVE 311 + P ++ E Sbjct: 291 -VLYPVKIFYE 300 >UniRef50_B1XV87 tRNA pseudouridine synthase B n=2 Tax=Polynucleobacter necessarius RepID=B1XV87_POLNS Length = 303 Score = 327 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 128/307 (41%), Positives = 179/307 (58%), Gaps = 20/307 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+GV+LLDKP GMSS DA+ VK +NA++AGHTG LDP+ATG+LPICLGEATK+SQ LL Sbjct: 5 IDGVVLLDKPAGMSSQDAVTAVKHAFNADKAGHTGTLDPMATGLLPICLGEATKYSQDLL 64 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ------LAAALDTFRGDIEQIPS 124 ++DK Y + G RTDT DA+GQI+EE P+ A L A L F G I Q+P Sbjct: 65 EADKTYIAQVKFGARTDTGDAEGQIIEELPLPTFANDAEIKIALDALLPKFAGPISQVPP 124 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK GK LYEYAR G+E+ R R I ++ + + E LE+ CSKGTYIR + Sbjct: 125 MYSALKRDGKPLYEYARAGVELERIPRDIVIHSIRWTNINWPEATLEVSCSKGTYIRVLA 184 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G LGCGAH++ LRR V +E+ +E ++ ++ + ++P+ Sbjct: 185 EDIGNALGCGAHLVGLRRTEVGHLTLEQSFKIESIQNGLQNSA-----------DYILPV 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVT--EGENGKFIGMGEIDDEGR 302 D+ P + + + + G V + +E LVR+ FIG + G Sbjct: 234 DALLQTLPHLTVDEQQAKRLEMGQRVPLNLPSIEALVRIYRATAAPHNFIGTADWRS-GV 292 Query: 303 VAPRRLV 309 + P+RL+ Sbjct: 293 LHPKRLI 299 >UniRef50_C6D2E9 tRNA pseudouridine synthase B n=2 Tax=Paenibacillus RepID=C6D2E9_PAESJ Length = 300 Score = 326 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 163/309 (52%), Gaps = 20/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ + KP G +S+D + KV+RI R GH G LDP+ TG+LP+CLG +T+ +YL Sbjct: 1 MDGIIAVWKPAGWTSHDVVAKVRRIVRMKRIGHAGTLDPMVTGVLPLCLGRSTRVVEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y + +LG TDT D G ++EE+ + + EQ+ L +F G+I+Q+P M+SA+ Sbjct: 61 ERPKAYEAVIQLGTATDTEDLTGTVLEEQTGIIVTREQVLQVLQSFVGEIDQVPPMFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIID 185 K GK+LYE AR+G V R++R +T++++ + + + CSKGTYIRT+ Sbjct: 121 KVDGKRLYELAREGKTVERKSRKVTIHQIDLLNVDLDADKPRFAFSVICSKGTYIRTLCV 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G LG A + L R E+ VTLE L EL + L+ ++P D Sbjct: 181 DIGRALGVPAAMAELTRTMSGGITREQCVTLEELEELQAAGK---------LEEKMLPAD 231 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVR----TSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 V + G + + LVR+ GEN FIG+ E DD+ Sbjct: 232 IAIDHLQRVQANAAVTEMALRGQKIPYNRMAASFDSSSLVRLY-GENDAFIGIFEADDQA 290 Query: 302 R-VAPRRLV 309 + P ++ Sbjct: 291 SALKPVKVF 299 >UniRef50_A9KNW1 tRNA pseudouridine synthase B n=6 Tax=Clostridiales RepID=TRUB_CLOPH Length = 307 Score = 326 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 164/316 (51%), Gaps = 27/316 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + K +G +S D K++ I + GHTG LDP A G+LP+C+G ATK L Sbjct: 1 MNGIINVYKEKGFTSFDVCAKLRGILKQKKIGHTGTLDPDAEGVLPVCVGNATKLCDLLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK Y + LG TDT D G+++E R VT + +++ ++ F +QIP MYSA+K Sbjct: 61 DKDKVYEAVLTLGIITDTEDMTGEVLERRLVTATYDRVLEVVEQFTRTYDQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--------NELELEIHCSKGTYIRT 182 G+KLYE ARQG + R+ R +T++ + + +E+ + + CSKGTYIR+ Sbjct: 121 VNGQKLYELARQGKVIERKPRTVTIHAIDILGVTPLEEQPEIVHEVRMRVSCSKGTYIRS 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+GE L CG + L R VS + +E + L + E V+ + L+ +LM Sbjct: 181 LCRDIGEALQCGGCMKSLIRTQVSIFTLENTLRLAEIEECVKN---------QTLEQVLM 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG--------LVRVTEGENGKFIGM 294 P+D P V + S + NGN + E +RV + E+ F G+ Sbjct: 232 PVDKLFLSMPKVVVKKESCKFLYNGNQLVEDNFTWEKVSDQINIDKIRVYDSED-VFTGI 290 Query: 295 GEIDD-EGRVAPRRLV 309 E D+ + P ++ Sbjct: 291 YEYDEKKNCYQPVKMF 306 >UniRef50_Q3ZXU5 tRNA pseudouridine synthase B n=5 Tax=Dehalococcoides RepID=TRUB_DEHSC Length = 300 Score = 326 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 11/302 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L ++KP G++S D + KV+RIY+ R GH G LDP ATG++P+ LG +T+ +YL Sbjct: 1 MDGILNINKPFGITSFDVVAKVRRIYSQKRVGHGGTLDPYATGVIPVFLGRSTRLIEYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TD+ D++G+I + + E + L F+G+I QIP MYSA+ Sbjct: 61 SVSKTYLAEIELGVETDSYDSEGEITFRKTCDYVTREMIYKTLMDFQGEIIQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K++G +LY ARQGIEV R R T+Y + + + L + I C GTYIR++ DLG Sbjct: 121 KHRGMRLYNLARQGIEVERIPRVATIYGIELLNYTSPVLRVRIECGHGTYIRSLAFDLGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCGA++ L R A ++ + + L + L +L+P+++ Sbjct: 181 KLGCGAYLKSLVREAYGQFNLANSLDFADLEAAKCDGK---------LAGILLPLETAIG 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P V+L + NG + V V EN F+ + + + +G P ++ Sbjct: 232 HLPRVSLDEKNITRLVNGLEITLDRIDKPEAVAVYNAEN-SFVAIIQPETDGTWHPAKVF 290 Query: 310 VE 311 + Sbjct: 291 IR 292 >UniRef50_B8FR03 tRNA pseudouridine synthase B n=2 Tax=Desulfitobacterium hafniense RepID=B8FR03_DESHD Length = 294 Score = 325 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 170/306 (55%), Gaps = 19/306 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+ + KP GM+S+D + +++RI N + GHTG LDP TG+LPIC+G+AT+ ++Y+ Sbjct: 1 MDGVINVLKPPGMTSSDVVVRLRRILNTRKIGHTGTLDPEVTGVLPICVGKATRLAEYIT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K YR G TDT DA G+I+ + P SAE + + G I QIP M+SA+K Sbjct: 61 NQGKSYRCEMIFGITTDTQDASGEILHKEPAQVSAEDFQRLIPQYLGSIRQIPPMFSAVK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDDL 187 +QGK+LYE ARQG+EV R +R I + L + E + E+ CSKGTYIRT+ D+ Sbjct: 121 HQGKRLYELARQGLEVERTSREIHIDHLQLMEWIAGEYPKAIFEVDCSKGTYIRTLCHDM 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+ LGCGAH+ L RL + ++ ++LE ++ +EQ + L+P Sbjct: 181 GQTLGCGAHMSALIRLRSGPFHIQESLSLETIQNFMEQDDYS----------FLIPYIQV 230 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV----RVTEGENGKFIGMGEIDDEGRV 303 D P V+L ++ F+NG S + + V G F+G+G E + Sbjct: 231 L-DLPRVSLSPQRALAFRNGLSTAKSQIEVGAEIGEGCEVQVFSEGNFLGIGIWR-EQAL 288 Query: 304 APRRLV 309 P ++ Sbjct: 289 CPYKVF 294 >UniRef50_D1PLN1 tRNA pseudouridine synthase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN1_9FIRM Length = 297 Score = 325 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 161/302 (53%), Gaps = 11/302 (3%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L +DKP G +S D L K++ + GH+G LDP+ATG+L + +G+AT + L+ Sbjct: 5 NGILPVDKPAGWTSFDVLAKLRGALGTRKLGHSGTLDPMATGVLAVFIGKATAAADRQLN 64 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y R GQRTDT D G ++E PVT E+L A L F G+ Q+P MYSA+K Sbjct: 65 HDKTYEATLRFGQRTDTGDITGTVLETAPVTIGEEELRAVLPRFMGEQMQLPPMYSAVKI 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-ELELEIHCSKGTYIRTIIDDLGEK 190 G+ LY+ AR+G V R RPITVY + ++ + L I CSKGTYIR + +D+G+ Sbjct: 125 NGQPLYKAARKGQTVERTPRPITVYSIEYLGTPKPGDYTLRIACSKGTYIRVLAEDIGKA 184 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG A + LRR ++ + + TL + E+ + D ++P+++ + Sbjct: 185 LGVPATLAALRRTRAGEFEISQCHTLPDILAAAEKGTLTE-------DGWILPVETVFAP 237 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 P + + + NG P + A +G R + E G F+G+ + G + +L Sbjct: 238 LPTLTVNDGVKAHLFNGCP-TSHYAAADGRYRAYDKE-GTFLGLAAVKG-GVLQVEKLFC 294 Query: 311 EY 312 E Sbjct: 295 ER 296 >UniRef50_Q812X9 tRNA pseudouridine synthase B n=128 Tax=Bacilli RepID=TRUB_BACCR Length = 307 Score = 325 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 105/312 (33%), Positives = 165/312 (52%), Gaps = 20/312 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + GV+LL KP+GM+S+D + K+++I R GHTG LDP TG+LPIC+G ATK +Q+L Sbjct: 1 MEGVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG T T DA G++VE + V + ++ L G IEQ+P M+SA Sbjct: 61 SETKTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRMEVEKVLAELTGTIEQMPPMFSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYEL------LFIRHEGNELELEIHCSKGTYIRT 182 +K GKKLYEYAR G EV R R IT++E E + CSKGTY+RT Sbjct: 121 VKVNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRT 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +GEKLG +H+ +L R A ++ +E ++ E + E V+ ++ + + Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENVQNG---------TVESIFI 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-- 300 +D S +P + + + KNG ++ + V + +N + + + E + Sbjct: 232 SIDEALSKFPKMVVDEKQAEKIKNGMFLKNELEITAPFITVFD-KNDRCLAIYEHHPKHP 290 Query: 301 GRVAPRRLVVEY 312 G + P +++V Sbjct: 291 GMLKPMKVLVNN 302 >UniRef50_B8I6F0 tRNA pseudouridine synthase B n=5 Tax=Clostridium RepID=B8I6F0_CLOCE Length = 309 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 169/319 (52%), Gaps = 31/319 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L + KP GM+S D + ++++ + GH G LDP A G+LP+C+G ATK ++++ Sbjct: 1 MNGILNVLKPAGMTSFDVIGYMRKLTGQKKIGHAGTLDPSAVGVLPLCIGNATKALEFMI 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + DK YR LG TDT D+ G ++ V + + ++ +F G IEQ+P MYSA+K Sbjct: 61 NKDKVYRAELTLGISTDTQDSSGTVLSFHSVDVTENDIKKSIISFMGTIEQLPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFI----------------RHEGNELELEIHC 174 GKKLYE ARQG + RE+R I +Y + I ++ L+IHC Sbjct: 121 IGGKKLYELARQGQTIERESRTIQIYNIDIIRIWDDSEVFESEGIPQEFAIKKVLLDIHC 180 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKGTYIRT+ D+GEKLGCG H+ +L R +Y ++ +T+E + +L E Sbjct: 181 SKGTYIRTLCHDIGEKLGCGGHMSFLVRTRAGQYDLDNSLTIEEVAQLSET--------- 231 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP-LEGLVRVTEGENGKFIG 293 + L+ L+P++ +Y + L + NG + RV N F+G Sbjct: 232 KSLEVHLLPVEKVFEEYDRIELNKEELFKYNNGVWLEVEKNKYKNTFYRVYN--NNSFLG 289 Query: 294 MGEIDDEG---RVAPRRLV 309 +GE+ ++G + ++ Sbjct: 290 LGEVFEKGNTLYLKSKKFF 308 >UniRef50_Q8RA40 tRNA pseudouridine synthase B n=10 Tax=Thermoanaerobacteraceae RepID=TRUB_THETN Length = 285 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 174/302 (57%), Gaps = 20/302 (6%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++GVL + KP GM+S+D + +++IY + GHTG LDP A G+LP+C+G ATKF+ YL Sbjct: 2 SVDGVLNVLKPPGMTSHDVVDFIRKIYGIKKVGHTGTLDPDAAGVLPVCMGRATKFTSYL 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 ++ DKRYR G TDT D G+IVE PV + E+L L F+G+I+QIP +YSA Sbjct: 62 MEHDKRYRFEITFGFSTDTLDKSGKIVESGPVPLFTLEKLQEVLSQFKGEIQQIPPIYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-ELELEIHCSKGTYIRTIIDDL 187 K +GKKLYEYAR+G EV +TVYEL I+++ L L++ CSKGTY+R ++ D+ Sbjct: 122 KKVKGKKLYEYARKGEEVEIPPIKVTVYELELIKYDAPHHLLLDVKCSKGTYVRALVRDI 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 +KL H+ +L R V + +E TLE ++E + P+D Sbjct: 182 CKKLEVPGHMSFLIRTEVGDFDIESSYTLEEIKE---------------GKAEVQPVDKF 226 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 +P V L SS NG +R + LV++ + G FIG+G + E ++ P+R Sbjct: 227 IK-FPSVELDEVSSNKILNGQFIRNTYNVENSLVKLYDNH-GIFIGIGVAEGE-KIRPKR 283 Query: 308 LV 309 L Sbjct: 284 LF 285 >UniRef50_Q5WFU5 tRNA pseudouridine synthase B n=2 Tax=Bacillaceae RepID=TRUB_BACSK Length = 302 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 149/307 (48%), Gaps = 20/307 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+++LDKP+G +S+D + ++++ + + GHTG LDP G+LPIC+G+ATK +Y+ D Sbjct: 5 GIVVLDKPKGWTSHDCVHQMRKWFQTRKVGHTGTLDPEVDGVLPICIGKATKVVKYMSDY 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y G T T DA G++VEE+ V F+ ++ A L F G IEQ P YSA+K Sbjct: 65 DKTYIGEVTFGVATTTEDAHGEVVEEKRVNKPFTRTEIEALLQAFIGKIEQTPPYYSAVK 124 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH-----EGNELELEIHCSKGTYIRTIID 185 GK+LYEYAR GIEV R R + + L + C+KGTYIRT+ Sbjct: 125 VNGKRLYEYARAGIEVERPTRTVEIKALTLTEITTAKPGCFSFAFSVTCTKGTYIRTLAV 184 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G+K G AH+ L R A + + L E+ L P+D Sbjct: 185 DIGKKAGYPAHMSKLTRTASGPFTQADAIPLSAFAEMSLDERL----------NKLRPLD 234 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI--DDEGRV 303 + +P V +NG + S + +G + E G + + + G + Sbjct: 235 TALQHFPRVTADKELEKRIRNGAVLEKSASFGDGRF-LFYNEQGDCLALYQAHPTKAGLI 293 Query: 304 APRRLVV 310 P L Sbjct: 294 KPETLFC 300 >UniRef50_UPI000178873D tRNA pseudouridine synthase B n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178873D Length = 303 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 99/309 (32%), Positives = 160/309 (51%), Gaps = 20/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G+L + KP G +S+D + KV+ + R GHTG LDP TG+LP+CLG AT+ +YL Sbjct: 4 LEGILAVHKPAGWTSHDVVAKVRGMVRLKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQ 63 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y + RLG TDT D G +VE V + ++ AL +FRG I Q+P MYSA+ Sbjct: 64 ELPKEYHAVLRLGYSTDTEDITGNVVETADEVRVTRDEALEALQSFRGQISQVPPMYSAV 123 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE----GNELELEIHCSKGTYIRTIID 185 K GK+LYE AR+G V R++R +T++E+ + E+ + CSKGTYIRT+ Sbjct: 124 KINGKRLYELAREGKTVERKSRTVTIHEIEMTDFDAEGEYTEISFRVLCSKGTYIRTLCV 183 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G KLG + ++ L R + + +TLE + + ++ E L L+P+D Sbjct: 184 DIGRKLGLPSVMVKLVRTISAGITEAQCLTLEQIEQFMKD---------ETLQTRLIPVD 234 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRT----SGAPLEGLVRVTEGENGKFIGMGEIDDE- 300 + + G + + +R+ + + F+G+ + +E Sbjct: 235 QAIHHLAKHTVSEEKAEAALKGQRLSSRAVEPAVDSSEPIRLYDIKEN-FLGIYKRQEET 293 Query: 301 GRVAPRRLV 309 G + P ++ Sbjct: 294 GAIVPVKVF 302 >UniRef50_A5UZQ6 tRNA pseudouridine synthase B n=5 Tax=Chloroflexaceae RepID=A5UZQ6_ROSS1 Length = 300 Score = 322 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 158/301 (52%), Gaps = 8/301 (2%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L +DKP GM+S+D + +++R+ R GH G LDP ATG+L + LG AT+ +Y+ Sbjct: 1 MHGFLNIDKPAGMTSHDVVARIRRLSGQRRVGHAGTLDPAATGVLVVALGGATRLIEYVQ 60 Query: 71 DSD-KRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 K+YR LG T T DADG+I+ P+ E + AL RG I Q P MY+A Sbjct: 61 HQTLKQYRATVCLGVTTTTDDADGEIIARHPLPPLDRETVERALAPLRGTIWQTPPMYAA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 L ++G++LYE AR G+ V R + + L + + L L++ C GTYIR + DLG Sbjct: 121 LHHEGRRLYELARAGVTVETPPRQVHIERLDLVAFDPPLLTLDVVCGSGTYIRALARDLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCGAH+ LRR AV + +E + L L E+A+ + +P ++++ L+P D Sbjct: 181 AALGCGAHLAALRRTAVGTFRIEDALPLRVLE---EEAQAEALPTSDIVRRHLLPPDIAV 237 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 +D+ V + S+ ++G P+ +G I + D P ++ Sbjct: 238 ADWYAVQVDEASARRLRHGMPLVAP--SGAAPRARAHAPDGTLIAILRF-DGTYWRPIKV 294 Query: 309 V 309 Sbjct: 295 F 295 >UniRef50_A8MFB1 tRNA pseudouridine synthase B n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=TRUB_ALKOO Length = 299 Score = 322 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 119/311 (38%), Positives = 180/311 (57%), Gaps = 24/311 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L + KP GM+S+D + V++ N + GHTG LDP A G+LPIC+G+ATK SQ+LL Sbjct: 1 MNGILNILKPPGMTSHDVVSVVRKKLNMKKVGHTGTLDPNAAGVLPICIGQATKISQFLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K+YR LG T+T D DG+I+ +R VT S +++ A+ +F G+ +QIP MYSA+K Sbjct: 61 DGKKKYRAELTLGIETNTEDIDGEILRQREVTSSPDEIREAVLSFIGEYKQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +GKKLYE ARQG+E+ R R +T+Y + I ++ ++ CSKGTYIRT+ D+GE Sbjct: 121 IKGKKLYELARQGVEIERAERTVTIYHIEIIEIFKEKVIFDVLCSKGTYIRTLCKDIGEV 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCG + +L R A S + ++ +T+E L+ L E ++ +L+PMD P Sbjct: 181 LGCGGVMSFLLRTASSDFSLDTAITIEELQAL------------ENVEDILLPMDYPLQH 228 Query: 251 YPVVNLPLTSSVYFKNGNPVRTS------GAPLEGLVRVTEGENGKFIGMGEIDDE---- 300 + S NGN + ++ P+ V V +F+G G + +E Sbjct: 229 MSKAIVKSAYSKQVLNGNRIYSNYLIDTIHEPIGQEVCVYL--EKEFVGFGIVRNEDHNQ 286 Query: 301 GRVAPRRLVVE 311 + RL+ E Sbjct: 287 KYIKILRLLFE 297 >UniRef50_A1HSB7 TRNA pseudouridine synthase B n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSB7_9FIRM Length = 292 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 112/303 (36%), Positives = 164/303 (54%), Gaps = 18/303 (5%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + KP GM+S+DA+ V+R+Y R GH G LDP A G+LP+ +G AT+ +Y D+ Sbjct: 4 GILNILKPPGMTSHDAVAFVRRLYGVKRVGHAGTLDPAAAGVLPVFVGAATRLIEYTADA 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK YRV +G+ TDT D G I+ P V L A L F G+IEQIP MYSA+K Sbjct: 64 DKSYRVEMTVGRETDTGDDTGNIIRTAPCVLPPISDLDALLQEFTGEIEQIPPMYSAIKI 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 G+KLY+ ARQGI V R+ R I + ++ I + ++ CSKGTYIRT+ D+G +L Sbjct: 124 GGQKLYDLARQGIIVERQPRRIKINKIQLIAVREQRIYFDVDCSKGTYIRTLCTDIGRRL 183 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GC A + +L R V + + +TLE + E+A L D + + Sbjct: 184 GCPAVMSFLVRTRVGNFQLTEALTLEEIAAEKERA--------------LQAPDLAVAHF 229 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR-VAPRRLVV 310 P + L + + G VR +G++R+ + +FIG+GE G + P ++V Sbjct: 230 PPIFLTVAQAKAIVQGQAVRID-CRNQGMIRLY-NDQKQFIGIGEKQGPGAPLRPVKIVC 287 Query: 311 EYP 313 P Sbjct: 288 TNP 290 >UniRef50_Q6F7I5 tRNA pseudouridine synthase B n=20 Tax=Proteobacteria RepID=TRUB_ACIAD Length = 318 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 140/306 (45%), Positives = 191/306 (62%), Gaps = 14/306 (4%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + R ++GV LL+KP G+SSN LQKV+ ++ A +AGHTGALDPLATG+LPICLGEATK Sbjct: 24 KISRRPVSGVFLLNKPLGLSSNGVLQKVRWLFRAQKAGHTGALDPLATGLLPICLGEATK 83 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIP 123 FS YLLDS KRY+ + +LGQ T T D +G++V+ R V + + L LD FRGDI+Q+P Sbjct: 84 FSHYLLDSTKRYQTVVKLGQVTTTGDVEGKVVQSRSVPPLTRDMLELVLDGFRGDIQQVP 143 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 MYSALK G+ LYE ARQGIE+ REARP+T++ L + + L L++ CSKGTYIR + Sbjct: 144 PMYSALKRDGRPLYELARQGIEIEREARPVTIHALKLVDFDTESLTLDVTCSKGTYIRVL 203 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 +D+GE LGCG H+ L R+ + + TLE+L +L E D LL+ Sbjct: 204 GEDIGEALGCGGHLTALHRVQTGHFELVPEYTLEYLEQLNETER----------DMLLLA 253 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 +P P V +P YF NG S + + V E + +G+ EI D+ R+ Sbjct: 254 PYAPVDYLPQVQIPEGRLKYFCNGQE---SNIDHDAVPEVLVFEGERCLGLAEITDKKRL 310 Query: 304 APRRLV 309 P+RL+ Sbjct: 311 VPKRLL 316 >UniRef50_A3WPV5 TRNA pseudouridine 5S synthase n=1 Tax=Idiomarina baltica OS145 RepID=A3WPV5_9GAMM Length = 319 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 143/318 (44%), Positives = 199/318 (62%), Gaps = 17/318 (5%) Query: 1 MSRPR-RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M + R R+GR INGVLLLDKP+ M+SN A+Q VKR+Y A + GHTGALDPLATG+LP+CL Sbjct: 1 MGQARPRKGRPINGVLLLDKPKEMTSNRAIQVVKRLYEAQKVGHTGALDPLATGLLPVCL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 GEATKFSQYLLD+DK YRV A+LG RT TSDA+G++VE+ PV S QL + F G+ Sbjct: 61 GEATKFSQYLLDADKAYRVEAQLGVRTTTSDAEGEVVEQNPVDVSDTQLNDIIAQFTGEQ 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q PS+YSALKY+GK LY YAR+GI+VPR+ R I+V + + +G+ + L++ CSKGTY Sbjct: 121 AQTPSIYSALKYEGKPLYYYARRGIDVPRKTRTISVRAIELLHRDGDFVTLQVACSKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT++DD+G+ LGCGAHV LRR V+ + +LE L + ++ Sbjct: 181 IRTLVDDMGQALGCGAHVRELRRTHVANLTDAQQWSLEALEQCDDEQRL----------A 230 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPV---RTSGAPLEGLVRVTEGENG---KFIG 293 L P+D+ + P + + +G PV + R+ FIG Sbjct: 231 CLEPVDTLLNGLPTQTISQAEARDVMHGQPVFNRTLDTQAVGDECRLCAKSTAGHSVFIG 290 Query: 294 MGEIDDEGRVAPRRLVVE 311 + + +G++ P+R++ Sbjct: 291 VVVLRKDGKLWPKRVLAL 308 >UniRef50_Q2BH44 TRNA pseudouridine synthase B n=1 Tax=Neptuniibacter caesariensis RepID=Q2BH44_9GAMM Length = 307 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 147/302 (48%), Positives = 208/302 (68%), Gaps = 10/302 (3%) Query: 18 DKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYR 77 +KP G+SSN ALQ+V+RIY+A +AGHTGALDPLATGMLPICLGEATKFSQ+LLDSDKRY Sbjct: 2 NKPPGISSNSALQQVRRIYDAAKAGHTGALDPLATGMLPICLGEATKFSQHLLDSDKRYI 61 Query: 78 VIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDT-FRGDIEQIPSMYSALKYQGK 134 A+LG RTD+SDADG +VEE+PV + +++ A L + F G+IEQ+PSM+SALK+QG+ Sbjct: 62 TTAKLGVRTDSSDADGAVVEEKPVPTDLTEDKIDAILQSEFSGEIEQVPSMFSALKHQGQ 121 Query: 135 KLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCG 194 LY+ AR+GI+V + R +T++E+ +E++LE++CSKGTYIR+I++DLG LGCG Sbjct: 122 PLYKLARKGIQVEVKPRKVTIHEIKLTALRDDEIDLEVYCSKGTYIRSIVEDLGHILGCG 181 Query: 195 AHVIYLRRLAVSKYPVERMVTLEHLRELVEQA--EQQDIPAAELLDPLLMPMDSPASDYP 252 AHV L RL V + +RM++L+ LRELV + E+Q LD LL+P + D P Sbjct: 182 AHVKMLHRLDVGAFTADRMMSLDELRELVPENTTEEQQKGIQIELDKLLLPAWAAVDDLP 241 Query: 253 VVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVT----EGENGKFIGMGEIDDEGRVAPRRL 308 V L + +G V + L+R+ + + +F+G+ E+ E ++ P+RL Sbjct: 242 AVRLNDQQTSLIMHGQAVANANYAEGSLIRLFGTSLDSDAERFLGVAEVV-EQQLKPKRL 300 Query: 309 VV 310 + Sbjct: 301 IC 302 >UniRef50_Q8K9H3 tRNA pseudouridine synthase B n=4 Tax=Buchnera aphidicola RepID=TRUB_BUCAP Length = 312 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 206/303 (67%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 + R++NG LLLDKP+GM+SN+ LQKVK I+ A +AG+ G LDPLATG+LPIC GEATKFS Sbjct: 5 KKRNVNGFLLLDKPKGMTSNNVLQKVKIIFKAKKAGYIGTLDPLATGILPICFGEATKFS 64 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMY 126 YL SDK Y VIARLG++T TSD+DG IV +RP+ F+ QL+ AL G + QIPSMY Sbjct: 65 NYLNASDKHYNVIARLGEKTSTSDSDGIIVRKRPILFTPIQLSLALKALTGSVNQIPSMY 124 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SA+KY+G LY+YARQGI V R R + +Y++ + + N +EL +HCSKGTYIRT+I+D Sbjct: 125 SAVKYKGIPLYKYARQGINVKRNIRCVFIYKIDLVDQKDNWIELNVHCSKGTYIRTLIED 184 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LGEKL CGAHVI LRRL + ++V L L L+ + I + +D LLMP+D+ Sbjct: 185 LGEKLFCGAHVIRLRRLKIGLLSYSKLVKLSFLENLLNEKNVVKINFFKKIDDLLMPVDT 244 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 P P + + + F+ G V S + GLVRV E +N FIG+G+I+ E + P Sbjct: 245 PVYFLPKIYISIEKLSVFRLGQKVNFSSSITNGLVRVFEKDNNTFIGLGKINSEKTLIPY 304 Query: 307 RLV 309 RLV Sbjct: 305 RLV 307 >UniRef50_Q31GK3 tRNA pseudouridine synthase B n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=TRUB_THICR Length = 303 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 128/311 (41%), Positives = 178/311 (57%), Gaps = 18/311 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +++ + I+G++LL+KP+G++SN LQ+V+R+YNA +AGHTGALDP ATG+LPICLGEATK Sbjct: 3 KKQWQKIDGIVLLNKPEGVTSNGLLQQVRRVYNAKKAGHTGALDPFATGLLPICLGEATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIP 123 S LLDSDKRY +LG TD+ D DG ++ V S L F GD+ Q+P Sbjct: 63 ISGLLLDSDKRYIATLQLGLETDSGDKDGNPLKTIAVPALSKAMLETVFSQFEGDVMQVP 122 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 MYSALK+QGK LYEYAR+GI + R ARPI +YEL I E + E+ CSKGTY+RT+ Sbjct: 123 PMYSALKHQGKPLYEYARKGIHIERAARPIHIYELKLIDFENTVVRFEVLCSKGTYVRTL 182 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 +D+ + LG H+ L R + M TLE + D L P Sbjct: 183 GEDIAKALGTVGHLTGLHRTQTGALTGDEMATLEEIE--------------LNKDAYLQP 228 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI-DDEGR 302 +D P ++L + +G + P LVR + + +FIG+GE ++ Sbjct: 229 LDLPLKHLQAIHLNAKDTDKILHGGKLAVEE-PETLLVRFYDPQQ-RFIGVGEWQQEKQL 286 Query: 303 VAPRRLVVEYP 313 + P+RL P Sbjct: 287 LKPKRLFNLNP 297 >UniRef50_C8P7Y2 tRNA pseudouridine synthase B n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P7Y2_9LACO Length = 317 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 161/309 (52%), Gaps = 19/309 (6%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + ++G++ L K +GM+S D + +++RI + GH+G LDP G+LPIC+G ATK +Y Sbjct: 17 QKMDGIIPLYKERGMTSFDCVSRLRRILKTRKIGHSGTLDPAVDGVLPICVGNATKAVEY 76 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMY 126 L+ S K Y+ +G+ T+T D DG++V + PV S EQ+ AA+ G I Q+P MY Sbjct: 77 LMQSGKIYQGELVIGRATETEDFDGRVVAQTPVPAPLSDEQVRAAMAKLTGKITQVPPMY 136 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFI------RHEGNELELEIHCSKGTYI 180 SA+K GK+LYEYAR G V R AR +T+ E + H+ + ++ CSKGTYI Sbjct: 137 SAVKVNGKRLYEYARAGETVERPARQVTITEFTLVRSHYDQEHQEQHVFFKVACSKGTYI 196 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT++ DL +LG + +L RLA + +++ ++L ++ V + + Sbjct: 197 RTLVVDLARQLGYPGAMKWLTRLASGGFTLDQTLSLADIQTAVAN---------QTIKRY 247 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 L P+D DYP V L +NG + + V +G+ + + Sbjct: 248 LYPLDYALKDYPAVELTDQQWRAVQNGGWLTAAELSPAA-AEVVLKYDGQVKALYH-QAD 305 Query: 301 GRVAPRRLV 309 P ++ Sbjct: 306 NHYQPTKMF 314 >UniRef50_UPI0000E0F5A1 tRNA pseudouridine synthase B n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F5A1 Length = 331 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 160/330 (48%), Positives = 212/330 (64%), Gaps = 22/330 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R RR+GR INGV LLDKP G SSN+ LQKV+ +Y A +AGHTGALDPLA+GMLPICLG Sbjct: 1 MGR-RRKGRAINGVFLLDKPLGESSNNVLQKVRAMYGAAKAGHTGALDPLASGMLPICLG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKFSQ+LLD+DK Y V A LG RT TSDADG++V PVT + + + AA +F G + Sbjct: 60 EATKFSQFLLDADKTYEVTATLGIRTTTSDADGEVVSTLPVTSTEDDIRAACLSFVGASK 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 QIPSM+SALK++GK LY YARQGIE+ R AR IT++ L +R EG EL++ +HCSKGTYI Sbjct: 120 QIPSMFSALKHEGKPLYWYARQGIEIDRPARDITIFALDILRIEGVELDMRVHCSKGTYI 179 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ-DIPAAELLDP 239 R+++DD+G+ LGCGA+V L R V+ YP ++M++L+ L+ LV+ +DP Sbjct: 180 RSLVDDIGQVLGCGAYVSRLHRSQVAGYPSDKMMSLDALQTLVDTHRIDKGSEHHPYIDP 239 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNP-----------------VRTSGAPLEGL-- 280 LL+PMD P K G P V+ +G Sbjct: 240 LLLPMDIPLYALGSTVATDAQINGVKVGMPFIPAKMTPAQVDETVVDVKAMALSKDGFEQ 299 Query: 281 VRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 V+V + E+G + E+ D+G + P+R+VV Sbjct: 300 VKVYD-ESGNIYAVAELKDDGYLHPKRVVV 328 >UniRef50_A8LL26 tRNA pseudouridine synthase B n=42 Tax=Rhodobacterales RepID=TRUB_DINSH Length = 304 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 167/310 (53%), Gaps = 12/310 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R R++GR ++G +++DKP G+SSN + KV+ ++A +AGH G LDP ATG+L I LG Sbjct: 1 MGR-RKKGRAVSGWIVIDKPAGLSSNAVVGKVRWAFDAQKAGHAGTLDPEATGVLAIALG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK ++ D+ K Y RLGQ T+T D +G++ E S +++ AAL F GDI Sbjct: 60 EATKTVPFVTDALKAYEFTVRLGQATNTDDGEGEVTETSDARPSDDEIRAALPPFEGDIL 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTY 179 Q+P +SA+K G++ Y AR G E+ ARP+ V L FI R + + + LE+ C KG Y Sbjct: 120 QVPPQFSAVKIDGERAYARARAGQEMEIAARPLYVDSLTFIARPDPDHVTLEMVCGKGGY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R+I DLG LGC HV LRR + + LE L +L + LD Sbjct: 180 VRSIARDLGRALGCFGHVKSLRRTWSGPFELSDATPLETLEDLAKD---------PALDA 230 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 LMP+++ +D P + + +NGNP + E NG + +G Sbjct: 231 HLMPLETGLADLPELPCTPEGAARMRNGNPGMVRASDAEYGETAWASYNGTAVAVGTYRA 290 Query: 300 EGRVAPRRLV 309 G + P R+ Sbjct: 291 -GELHPTRVF 299 >UniRef50_B9ZLN1 tRNA pseudouridine synthase B n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZLN1_9GAMM Length = 319 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 132/329 (40%), Positives = 190/329 (57%), Gaps = 26/329 (7%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RR ++G+LLLDKP+G SS L +VK + A +AGHTGALDP ATG+LP+C G Sbjct: 1 MARARRE---VDGILLLDKPRGPSSTQVLGRVKYLLQARKAGHTGALDPRATGLLPLCFG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 +ATK S +LLD+DK Y A+LG TD++D DG I+ E PV E+L A F G Sbjct: 58 QATKVSGWLLDADKHYVAEAQLGVETDSADLDGAIIREAPVPAIEPERLRALEQQFSGAQ 117 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 EQ+P M SALK+ G++LYE AR+G+EV R RP+ ++ L L +++ CSKGTY Sbjct: 118 EQVPPMVSALKHDGQRLYELARRGVEVERPPRPVQIHALSIEAIAPERLRIDVRCSKGTY 177 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R+++ D+G LGCGA V LRR+ + MVT+E + + A ++ Sbjct: 178 VRSLVVDIGHALGCGAAVDSLRRIGHGPFEAAAMVTMEQV------EAAFEAGGAAAIEA 231 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNP-----VRTSGAPLEG----------LVRVT 284 +L ++ +P V+L +S ++G+P + + EG LVRV Sbjct: 232 MLQAPETALGHWPSVSLNAQASAAMRHGHPADPEAIESRTPGTEGAPVEAESGWPLVRVY 291 Query: 285 EGENGKFIGMGEIDDEGRVAPRRLVVEYP 313 + E G F+ +G + +GRV PRRL V P Sbjct: 292 DAEGG-FLAVGAREPDGRVRPRRLFVPAP 319 >UniRef50_C3RL16 tRNA pseudouridine synthase B n=4 Tax=Bacteria RepID=C3RL16_9MOLU Length = 283 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 22/298 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++L++KP GM+S+D + K++RI + GH G LDP ATG+L +C+ +ATK Q+L Sbjct: 4 MDGIILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLT 63 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TDT DA G+I+E + ++ A + F G EQ P +YSA+ Sbjct: 64 SESKEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAI 123 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYEYAR G +V R +TV L ++ E N ++ ++ CSKGTYIR++ DL + Sbjct: 124 KVNGKKLYEYARAGEQVEVPTRSVTVNHLEILQIENNLIKFKVGCSKGTYIRSLCYDLAK 183 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG H+ L R + +E TLE + + + ++ + Sbjct: 184 ALGYPGHMKDLIRTKSGNFSLENCFTLEQIEN---------------GEYTTVSLEEALN 228 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 Y + + +G +++ V GK + M D G + R Sbjct: 229 SYQQLVVDDE--KIIFHGKKIKSDLNEQ----VVILNRQGKVLAMYGPDGNGYLKSIR 280 >UniRef50_Q0SSD7 tRNA pseudouridine synthase B n=33 Tax=Clostridium RepID=TRUB_CLOPS Length = 294 Score = 317 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 179/309 (57%), Gaps = 22/309 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGV+ + K GM+S D + V+R+ + GHTG LDP A+G+LP+CLG+ATK Y++ Sbjct: 1 MNGVINIYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPEASGVLPVCLGKATKIIDYIM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 ++ K YRV +LG TDT D +G+++ E + +++ +++F G I+Q+P MYSAL Sbjct: 61 ENKKVYRVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFVGTIDQVPPMYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE-GNELELEIHCSKGTYIRTIIDDLG 188 K G +LYE ARQGIEV REAR IT+Y + I+ E + +++++ CSKGTYIR++ D+G Sbjct: 121 KQNGVRLYELARQGIEVHREARKITIYSIENIKIESNDNIQMDVCCSKGTYIRSLCYDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 EKL GA + L R+ + E + +E L E ELL+ ++ ++ Sbjct: 181 EKLNVGATMTALERIQNGPFIKEEAINIEDLTE-------------ELLEKHIISIEKAL 227 Query: 249 SDYPVVNLPLTSSVYFKNG-----NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 + + + +NG N + + L RV E +NG F+G+G+ D++G Sbjct: 228 DSFEKITVNEKFGKLLRNGVKVFDNRMYSEEVEFNKLYRVYE-DNGVFLGLGKRDEKG-F 285 Query: 304 APRRLVVEY 312 +L++E Sbjct: 286 KLEKLLIEE 294 >UniRef50_C0ZF47 tRNA pseudouridine synthase B n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZF47_BREBN Length = 308 Score = 317 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 166/311 (53%), Gaps = 18/311 (5%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 ++NGVL++DKP GM+S+D + +++R+Y + GHTG LDP TG+LPIC+G AT+ +Y Sbjct: 2 SNVNGVLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGHATRLVEY 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQIPSM 125 L + KRY V+ RLG T T DA G++VE+ V + E++ A ++F G++EQ+P M Sbjct: 62 LQELPKRYDVVMRLGSTTTTEDASGEVVEQAGVDAAWITTERIQALFESFLGEMEQVPPM 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIR 181 +SA+K GK+LY+ AR+G + R+AR +T+YEL + + ++ CSKGTY+R Sbjct: 122 FSAVKVNGKRLYDLAREGTVIERQARKVTLYELTLHKISVDGDTVDVAFTCTCSKGTYMR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ DLG LG AH+ LRR+ + + + L+ + E E + L Sbjct: 182 TLCVDLGRALGYPAHMKLLRRIKSGPFQEQEAIPLQQIEEQAASGED--------ISRHL 233 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI--DD 299 + + S P + +NG G E + +G+ + D Sbjct: 234 VSIPQAISFLPSFQVKPERIKAVRNGLATALPGVTAEEGSLICLFAGEDLLGIHRVCRGD 293 Query: 300 EGRV-APRRLV 309 +G P ++ Sbjct: 294 KGLFAKPEKVF 304 >UniRef50_A8RZ93 Putative uncharacterized protein n=8 Tax=Clostridiales RepID=A8RZ93_9CLOT Length = 320 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 104/324 (32%), Positives = 165/324 (50%), Gaps = 26/324 (8%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 + + +G++ + K G +S+D + +++ I + GHTG LDP A G+LP+CLG Sbjct: 5 AARSKEHTMYHGIINVYKEPGYTSHDVVARLRGILKQKKIGHTGTLDPAAEGVLPVCLGA 64 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER---PVTFSAEQLAAALDTFRGD 118 T+ L D K Y+ + LG TDT D G I+ E ++ + EQ+ A+ F+GD Sbjct: 65 GTRLCDMLTDRSKTYQAVMLLGCETDTQDTTGTILAEDREGALSLAEEQVNEAVMGFKGD 124 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 QIP MYSALK GKKLYE AR G EV R R + + ++ R E + +E+ CSKGT Sbjct: 125 YAQIPPMYSALKVDGKKLYELARAGKEVERRPRAVQILDIKVSRIELPRVWMEVTCSKGT 184 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIRT+ D+G LGCG + +L R V ++ +E +TL+ L +L +QA ++ Sbjct: 185 YIRTLCHDIGRLLGCGGCMEHLTRTRVDRFSIEDSLTLDQLEQLRDQA---------AVE 235 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT------------SGAPLEGLVRVTEG 286 ++P++ YP + + NGNP +GA + R+ + Sbjct: 236 SCILPVEEALQSYPPLGCLPEADSLLHNGNPCFARHLDWSQSDQWKAGAEDGQMFRMYDS 295 Query: 287 ENGKFIGMGEIDDE-GRVAPRRLV 309 N +F G+ + + P ++ Sbjct: 296 -NHRFTGVYQYQKDRHWWKPWKMF 318 >UniRef50_C7I1W4 tRNA pseudouridine synthase B n=1 Tax=Thiomonas intermedia K12 RepID=C7I1W4_THIIN Length = 345 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 121/321 (37%), Positives = 170/321 (52%), Gaps = 21/321 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+ + +N VLLL+KP+G++S AL +V+R A +AGH G LDPLA G+L +C G Sbjct: 1 MNVQKTPWEAVNSVLLLNKPRGLTSQQALFRVRRRLRAAKAGHGGTLDPLADGLLMLCFG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 ATKF+Q L++DKRY + +LG RT T DA+G+IVE R V S Q+ A L F G I Sbjct: 61 AATKFAQRHLEADKRYVAVLQLGVRTTTDDAEGEIVERRAVEVSRSQVDAVLPRFIGAIS 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q P +YSALK GK LY YAR G V AR + ++ + + + ++L L +HC KGTYI Sbjct: 121 QTPPVYSALKRDGKPLYAYARAGETVEVAARTVQIHSMDVLSLQNDQLALAVHCGKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + D+GE LGCGAH+ L R A + +E+ +TL+ L L Sbjct: 181 RALARDIGEALGCGAHLAALTRTASGGFSLEQALTLDEAEALASAD----------LRSR 230 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL----EGLVRVT----EGENGKFI 292 L+P D P NL + F +G + VRV G++ + Sbjct: 231 LLPTDVLLQSSPRQNLDAAQAQRFLHGARLSGLAPDEPVVPGEDVRVYGPLAAGQDAVLL 290 Query: 293 GMGEIDDEG---RVAPRRLVV 310 G+G + + PRRL+ Sbjct: 291 GIGAWEQGAESVVLTPRRLLC 311 >UniRef50_Q0AYI5 tRNA pseudouridine synthase B n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=TRUB_SYNWW Length = 299 Score = 316 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 168/307 (54%), Gaps = 20/307 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++G L ++KPQ M+S D ++K+K++ + GH G LDP+A G+LP+ +G T+ ++ Sbjct: 1 MHGFLNINKPQAMTSFDVIKKLKKVLPRKYKLGHLGTLDPMAEGVLPVAVGCGTRIIPFV 60 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D K Y LG +DT DA G I P Q+ L FRG Q+P MYSA+ Sbjct: 61 EDETKEYIATMTLGASSDTQDAWGVITYHTPRKIEPAQVEKVLALFRGKSRQVPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG----NELELEIHCSKGTYIRTIID 185 ++GK+LYE ARQG+EV R+AR I ++EL + + +L L + CS+GTYIRT+ Sbjct: 121 HHEGKRLYELARQGLEVERKAREIEIFELELLNADWEQELPQLSLRVSCSRGTYIRTLCH 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G++LGCGA++ LRR + +E V+L+++ I E L L+P+D Sbjct: 181 DIGQELGCGAYLSSLRRSRSGCFKIEEAVSLDYI-----------IEKRENLSRALLPLD 229 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGE---IDDEGR 302 P ++ P+++L NG + +G VR+ E G+ + + E +++ Sbjct: 230 YPINNLPLISLKSAELPAIINGRQISRTGKLASPRVRLYTPE-GQLLAIAEANNYNEDTV 288 Query: 303 VAPRRLV 309 + P R+ Sbjct: 289 LQPCRVF 295 >UniRef50_C2C2D8 tRNA pseudouridine synthase B n=3 Tax=Listeria RepID=C2C2D8_LISGR Length = 312 Score = 316 bits (810), Expect = 7e-85, Method: Composition-based stats. Identities = 97/317 (30%), Positives = 156/317 (49%), Gaps = 20/317 (6%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 + + G++ L K GM+S+D + ++++I + + GHTG LDP G+LPIC+G ATK + Sbjct: 2 EEKGMEGIIPLWKEPGMTSHDCVFRLRKILHTKKVGHTGTLDPDVAGVLPICIGRATKLA 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSM 125 +Y+ K Y +G T T DA G+I+ E+ V SAEQ+ A+ G+I Q+P M Sbjct: 62 EYVTAEGKTYIADVSIGTATTTEDASGEIIAEKAVSEISAEQIEEAIHQLEGEIAQVPPM 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR------HEGNELELEIHCSKGTY 179 YSA+K G+KLYEYAR G V R R + ++ + + E +EI C KGTY Sbjct: 122 YSAVKVNGRKLYEYARNGETVDRPVRKVQIHAIKRLDAPQSITAEAPTFTIEISCGKGTY 181 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ +GE LG AH+ L+R + E L + +++ +Q Sbjct: 182 IRTLAVMIGEILGYPAHMSALKRTRSGYFETEHCFRLAEIEAMMKAEDQ----------H 231 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPV-RTSGAPLEGLVRVTEGENGKFIGMGEID 298 L+P++ ++ P + + NG + A + RV GK + + + Sbjct: 232 FLLPLEKGIAEMPRIEVNAAVHSEILNGKVMPEYLFAAVNNEARVAVFHEGKLVAIYKPH 291 Query: 299 DEG--RVAPRRLVVEYP 313 E P +++ P Sbjct: 292 PEKAACWKPEKVIELRP 308 >UniRef50_D1CFW9 tRNA pseudouridine synthase B n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFW9_THET1 Length = 301 Score = 316 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 97/309 (31%), Positives = 161/309 (52%), Gaps = 14/309 (4%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 R + +NG ++++KP G++S + ++K++++A R GH G LDP ATG+LPI LG+A Sbjct: 4 RKNQSKEFLNGFIVINKPLGVTSQWVVNRIKKLFSARRVGHVGTLDPFATGVLPIALGKA 63 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 + ++ + K Y G +T T D +G I+ + + S + +A L F G IEQ Sbjct: 64 NRLAEVIHSQPKSYVAELSFGFKTSTGDLEGDIIAQSDIIPSPKDIAEILPEFIGQIEQT 123 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P YSA+K +G++ YE ARQG E+ R + +Y L + L+L I CS GTYIR+ Sbjct: 124 PPKYSAIKVEGRRAYELARQGQELTLPTRKVEIYSLEALEFRACTLKLAISCSSGTYIRS 183 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +D+ E+LG ++ L R +V + +E +T+E L + + + L+ Sbjct: 184 LAEDIAERLGAYGYLSNLVRTSVGAFSIESSITIEELESVGDYLQP----------ALIH 233 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE--GLVRVTEGENGKFIGMGEIDDE 300 P D + P V L NG V+ + E LVR+ NG+ +G+ E + Sbjct: 234 PPDDALTHLPAVMLDERDVQRISNGATVKMAHISEEPIPLVRIYSA-NGEIVGLAE-SRD 291 Query: 301 GRVAPRRLV 309 + PR ++ Sbjct: 292 NTLFPRIML 300 >UniRef50_Q2Y7W4 tRNA pseudouridine synthase B n=3 Tax=Nitrosomonadaceae RepID=TRUB_NITMU Length = 313 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 128/313 (40%), Positives = 189/313 (60%), Gaps = 22/313 (7%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 R I+GVLLLDK G+SSN ALQ KRI++A++AGHTG LDP+ATG+LPIC GEATKFS Sbjct: 6 KRHISGVLLLDKASGLSSNQALQTAKRIFSAHKAGHTGTLDPMATGLLPICFGEATKFSS 65 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQI-----VEERPVTFSAEQLAAALDTFRGDIEQI 122 LL +DK Y + RLG + T DA+G+I +E + V + E++ A +F G I Q+ Sbjct: 66 ALLGADKTYEAVLRLGYMSTTGDAEGEISIAAGMESQYVDLTREKIEAVRKSFIGVITQV 125 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSA+K++GK +Y +AR G+E+ R+ R IT+++L ++GNE+ + + C GTYIRT Sbjct: 126 PPMYSAIKHRGKPMYTFARAGVEIERQPRAITIHDLSIEAYQGNEMRIRVTCGSGTYIRT 185 Query: 183 IIDDLGEKLGC-GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 + +DLG LGC GA++ LRR A+ + + + TL L + D L Sbjct: 186 LAEDLGHALGCGGAYLTALRRSALGGFDLPQAYTLTGLEAMPPSQR----------DSCL 235 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL-----VRVTEGENGKFIGMGE 296 +P DS P V + +++ G + + E L VR+ + +F+G+GE Sbjct: 236 LPADSLLRSLPPVVVDSAAALSLLQGRAIPGTHPAGESLLPGRQVRLYDKAQ-RFLGLGE 294 Query: 297 IDDEGRVAPRRLV 309 I EG ++P+RL+ Sbjct: 295 ISTEGYISPKRLI 307 >UniRef50_C6IW07 tRNA pseudouridine synthase B n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IW07_9BACL Length = 305 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 98/310 (31%), Positives = 146/310 (47%), Gaps = 20/310 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + KP G +S+D + K + I R GHTG LDP TG+LP+CLG AT+ +YL D Sbjct: 6 GILPIHKPAGFTSHDVVAKCRGILKMKRIGHTGTLDPAVTGVLPLCLGRATRMVEYLQDL 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y LG TDT D G+I+E+ V + E + L F G I QIP MYSALK Sbjct: 66 PKEYEATLVLGVATDTEDMTGEIIEQVNEVQVTEEDVRRVLSRFVGTISQIPPMYSALKQ 125 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHE----GNELELEIHCSKGTYIRTIIDDL 187 GK+LYE AR+G V R+ R +T+Y+L + + CSKGTYIRT+ D+ Sbjct: 126 DGKRLYELAREGKTVERKPREVTIYQLELLAFHPEGLHPRISFRALCSKGTYIRTLCVDI 185 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G LG A + L+R + +TL+ + L L+P+D Sbjct: 186 GRALGVPAAMTELKRTMSAGITESHCLTLDEVARHAASG---------SLQDYLLPVDRA 236 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVR----TSGAPLEGLVRVTEGENGKFIGMGEIDDEGR- 302 P + G + + +R+ E +F+G+ +++ + Sbjct: 237 VQHLPAHTVAAEKVKAALQGQRLSPSVVSPAVKRGETLRLYSPEQ-QFLGIFRVEEGTKA 295 Query: 303 VAPRRLVVEY 312 V ++ + Sbjct: 296 VKAVKVFLPE 305 >UniRef50_UPI0000E87C37 tRNA pseudouridine synthase B n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C37 Length = 300 Score = 314 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 190/310 (61%), Gaps = 13/310 (4%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +P+R DI+GV+L+DKP G SSN AL K+K I++ +AGHTG LDPLATG+LPICLGEA Sbjct: 2 QPKRIKLDISGVILVDKPLGYSSNQALSKIKWIFSPKKAGHTGTLDPLATGLLPICLGEA 61 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQ 121 TKFS +LL+SDK Y +LG R++T D++G IV+ + +++ L F G EQ Sbjct: 62 TKFSSFLLESDKTYEASIKLGFRSNTGDSEGVIVDLNVQHFPALKEIKETLKQFSGMQEQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 P MYSALK++GK LYEYAR+G E+ R+ R I + L I + N L++ + CSKGTYIR Sbjct: 122 TPPMYSALKFKGKPLYEYARKGEEIERKKRSINIVSLDLIDYSDNVLKITVECSKGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G+KL G ++I LRR A+ VE+ TL+ + ++A D L+ Sbjct: 182 TLASDIGDKLNTGGYLIALRRTAIGSVNVEQAKTLDMIEASDKEAR----------DALI 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 P+D + ++L ++ K+G + G EG+ R+ ++ F+G+G +D G Sbjct: 232 FPIDEFLNYLDDISLVPSAEEAIKDGKTLLFKG-MKEGIYRLY-NKDKFFLGLGTLDRHG 289 Query: 302 RVAPRRLVVE 311 + RRL+ Sbjct: 290 YLKVRRLLAL 299 >UniRef50_D2MK32 tRNA pseudouridine synthase B n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK32_9BACT Length = 325 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 102/315 (32%), Positives = 159/315 (50%), Gaps = 25/315 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVL + KP G +S+D + KV+R+ + GH G LDP ATG+LP+ LG+ T+ S +LL Sbjct: 19 HGVLNVSKPAGWTSHDVVAKVRRLLQVPKVGHAGTLDPAATGVLPVLLGKGTRLSAFLLH 78 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y + RLGQ T T DA G IV + PV E + A+ F G+ +Q+P MYSA+K Sbjct: 79 WDKEYEAVLRLGQETTTQDATGAIVRDCPVPELRPETVHEAVAQFHGEQQQVPPMYSAVK 138 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+ LY+ AR G + R +RP+T+Y + ++ L + CSKGTYIRT+ D+G Sbjct: 139 IGGQPLYKAARAGKTLDRPSRPVTIYHIEIRALALPDVTLRVRCSKGTYIRTLCADIGRV 198 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG G H+ L R V + ++R +L+ + + + + +D + Sbjct: 199 LGVGGHLSRLIRSRVGPFHLDRAWSLDDIGRVDDLFGHPG---------AFLNLDEALAH 249 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEIDDEG- 301 P V + NG PV + P+E L RV + + G+ + +G+ Sbjct: 250 LPAVVVDPAMVEKVMNGAPVSGATLWSEDHRETPVETLFRVKD-DMGRLLALGKWAPSTL 308 Query: 302 -----RVAPRRLVVE 311 + ++ E Sbjct: 309 DVPGYELQMVKVFAE 323 >UniRef50_Q4L5X4 tRNA pseudouridine synthase B n=68 Tax=Bacilli RepID=TRUB_STAHJ Length = 305 Score = 313 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 93/311 (29%), Positives = 158/311 (50%), Gaps = 22/311 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L + K +G++S+D + K+++I + GHTG LDP +G+LP+C+G AT+ S Y++D Sbjct: 3 NGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVSGVLPVCIGTATRVSDYVMD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG+ T T D G+++++ V + ++ A L F G IEQ+P MYS+ Sbjct: 63 MGKSYNATITLGESTTTEDQTGEVIDKIDVQANAININEVDAVLKQFEGIIEQVPPMYSS 122 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELL-----FIRHEGNELELEIHCSKGTYIRTI 183 +K GKKLYEYAR+G V R R + + + +E+ C KGTYIRT+ Sbjct: 123 VKVNGKKLYEYARKGETVERPIRKVNIDSIARTSELQFEDGKCHFNIEVKCGKGTYIRTL 182 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D+G++LG AH+ L R+ + ++ +TL+ + +L EQ + L P L P Sbjct: 183 ATDIGKQLGYPAHMSLLTRINSGGFDIKDSITLDQISQLHEQ---------DTLQPHLFP 233 Query: 244 MDSPASDYPVVNLPLTSSV-YFKNGNPVRTSGAP--LEGLVRVTEGENGKFIGMG--EID 298 ++ P + + + NG +E + + E K + + + Sbjct: 234 LEYGLKSLPKIYVSDENIKTRILNGQKFNKKQFNQTIEQQLVFIDSETEKVMAIYIQHPE 293 Query: 299 DEGRVAPRRLV 309 + P+++ Sbjct: 294 KNHEIKPKKVF 304 >UniRef50_UPI00016C0EBC tRNA pseudouridine synthase B n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0EBC Length = 290 Score = 313 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 166/303 (54%), Gaps = 16/303 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ + K +G +S+D + K + I + GHTG LDP ATG+LPIC+GEATK YL Sbjct: 1 MDGIINIYKEKGFTSHDVVAKARGILRQKKIGHTGTLDPDATGVLPICIGEATKIVPYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D++K Y LG T T DA G++VEE V S EQ+ L TF G EQ P MYSA+K Sbjct: 61 DANKTYEAEVILGAYTTTEDASGEVVEEFSVEVSNEQVLDVLATFVGAYEQTPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIR-HEGNELELEIHCSKGTYIRTIIDDLGE 189 G++LYE ARQ I + R +R + + EL + + ++ + CSKGTY+RT+ D+G Sbjct: 121 INGQRLYELARQNIVIDRPSRMVEILELEQMSPLKDGRFKIRVVCSKGTYVRTLCTDIGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL CGAH+ L R V ++ +E+ VTL+ L +L + +L+ ++ Sbjct: 181 KLKCGAHMGELTRTRVGEFDIEQSVTLKQLEKLNA-------------EEILISIEKMFE 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 YP V + + + + NGNP+ A RV + FIG+ + E + ++ Sbjct: 228 QYPAVVVDQSYNKFLYNGNPLEVKIAAAGLFFRVYD-YMNHFIGLYKWSGEKLIV-EKMF 285 Query: 310 VEY 312 + Sbjct: 286 YKE 288 >UniRef50_Q1MZS4 TRNA pseudouridine synthase B n=1 Tax=Bermanella marisrubri RepID=Q1MZS4_9GAMM Length = 327 Score = 313 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 139/320 (43%), Positives = 203/320 (63%), Gaps = 17/320 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R RR+GRDI+G++++DKP GM+SN LQ+VKR+Y A +AGHTGALDP+ATG+LPICLG Sbjct: 1 MGR-RRKGRDISGIIVIDKPSGMTSNGVLQQVKRLYGAAKAGHTGALDPIATGVLPICLG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFSQ LL+SDKRY +LG+ DT+D +G+I++ V + +++ +AL FRG+I Sbjct: 60 EATKFSQRLLESDKRYITKVQLGESRDTADIEGEILDRADVPDLTQDKIESALTQFRGEI 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPR--EARPITVYELLFIRHEGNELELEIHCSKG 177 Q+P MYSALK+QGKKLYE AR G + +AR +++ +L + + LEL++ C+KG Sbjct: 120 TQVPPMYSALKHQGKKLYELARAGEDFDIQSKARQVSILKLELLDFGDDWLELDVTCTKG 179 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIR++ +D+ + LG V LRRL Y + M LE L E+ +++E L Sbjct: 180 TYIRSLAEDVAKALGTLGFVAVLRRLGAGPYHADMMHELEQLVEIKDKSE-----DFSNL 234 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS------GAPLEGLV--RVTEGENG 289 D LLMP + D P+V L L + + G + + G P V R+ + Sbjct: 235 DQLLMPTQTALPDVPLVELTLKQAHDLQFGRAIELNSQQFKAGEPAIAQVQLRLRYAQWD 294 Query: 290 KFIGMGEIDDEGRVAPRRLV 309 +G+GE+ +G +AP+RL+ Sbjct: 295 LLLGIGELSAQGVIAPKRLL 314 >UniRef50_Q18BH7 tRNA pseudouridine synthase B n=8 Tax=Clostridiaceae RepID=TRUB_CLOD6 Length = 301 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 106/312 (33%), Positives = 173/312 (55%), Gaps = 23/312 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N ++ + KP GM+S+D + +V++I N + GHTG LDP A+G+LPIC+G+ATK + +L Sbjct: 1 MNKIISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVIL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + DK Y LG TDT DA G+I+++ FS E + A DT RG+I Q+P +YSAL Sbjct: 61 NKDKSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSAL 120 Query: 130 KYQGKKLYEYARQGI--EVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 K GK++ + R G E+ + R + + ++ + +GN++ + CSKGTY+R+I D+ Sbjct: 121 KVNGKRMCDLVRSGRQSEITLKTRRVNIKDIKILSIKGNKVMFYVECSKGTYVRSICHDI 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 GE LGCGAH+ +L R + K+ ++ +TLE L E + LD L +D Sbjct: 181 GEYLGCGAHMSFLNRTSSGKFDLDNSITLEELELFYEN---------KTLDKYLYDIDYV 231 Query: 248 ASDYPVVNLPLTSSVYFKNG------NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 + V L + Y+ NG ++ + + VRV +N F+G+G++ Sbjct: 232 LDSFNYVVLNPNAIKYYSNGGSIDDKRFLKNNFDKDDEFVRVYSTDN--FLGLGKLSKHN 289 Query: 302 ---RVAPRRLVV 310 V ++ + Sbjct: 290 NTISVKSDKMFI 301 >UniRef50_C0WBC5 tRNA pseudouridine synthase B n=1 Tax=Acidaminococcus sp. D21 RepID=C0WBC5_9FIRM Length = 288 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 153/300 (51%), Gaps = 17/300 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ + KP GM+S+D + +++I + GH G LDP+A G+LP+ G+AT+F +Y Sbjct: 1 MDGIFNVLKPPGMTSHDVVGAMRKILQMKKIGHAGTLDPMAAGVLPVFTGQATRFLEYAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR G RTDT D +G+++ E PV +L L +F G+ Q+P MYSA+ Sbjct: 61 HDRKTYRAELTFGFRTDTGDLEGKVLAESPVRDLDLAELKETLQSFVGEGMQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 GKKLY+ ARQGI V RE RPIT+++L + + L E+ CSKGT+IRT+ +D+ + Sbjct: 121 SVGGKKLYKLARQGIVVEREPRPITIHDLSLLTYRKKTLLFEVTCSKGTFIRTLCEDIAK 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL + +L R V + +E TLE +++ + +D Sbjct: 181 KLAMEGTMSFLLRTKVGDFTLENAHTLEEIQQDPYGTA--------------LSLDVVLR 226 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 +P + + G G L V E + IG+ +GR+ P +++ Sbjct: 227 HFPHREVNDIQARRIAQGVATTVRGIEEGQLY-VIERNGHEVIGLARA-KQGRLCPHKII 284 >UniRef50_A9IMS8 tRNA pseudouridine synthase B n=3 Tax=Bartonella RepID=TRUB_BART1 Length = 320 Score = 311 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 103/321 (32%), Positives = 164/321 (51%), Gaps = 15/321 (4%) Query: 1 MSRPRRR-GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R R++ GR ++G ++ DKP+GM S +A+ K+K +++A +AGH G LDPLA+G+LPI L Sbjct: 1 MARQRKKKGRPVSGWVVFDKPKGMKSTEAVSKIKWLFHAQKAGHAGTLDPLASGLLPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 GEATK Y++ K YR GQ T D +G+I + + E++ A L + G I Sbjct: 61 GEATKTVPYVMQGKKTYRFHIAWGQERSTDDLEGEITKTSLKRPTQEEILALLPQYTGII 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR-HEGNELELEIHCSKGT 178 Q P +SA+K G + Y+ AR+G + R + + + EI C KGT Sbjct: 121 LQTPPQFSAIKIAGNRAYDLAREGEVIEIPPREVEIETFKLVETPTKEHSVFEITCGKGT 180 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELV-------EQAEQQDI 231 Y+R++ D+G LGC H+ LRR+AV+ + E +VT + L+ + ++ E Sbjct: 181 YVRSLARDMGRDLGCYGHIADLRRIAVAPFCEEDLVTWDELKAAISPNKNTTDENENSFE 240 Query: 232 PAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL---EGLVRVTEGEN 288 LD LL+ + P L T + G+ + S E V V E Sbjct: 241 KDFLTLDELLIETGAALDCLPHYPLTDTQAQRVMRGHSIPLSAQKTLLDEEEVCVLYKE- 299 Query: 289 GKFIGMGEIDDEGRVAPRRLV 309 + + +G + D+G P+R+ Sbjct: 300 -QLLAIGTL-DKGLFKPKRIF 318 >UniRef50_B0PH12 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0PH12_9FIRM Length = 300 Score = 311 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 158/305 (51%), Gaps = 16/305 (5%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L +DKP+G +S D + K++ I R GH G LDP+ATG+LP+ G ATK L Sbjct: 6 GILCIDKPEGFTSFDVVAKLRGIARERRVGHAGTLDPMATGVLPLFFGRATKACDILPRQ 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 DKRY +LG TDT D G ++ E+ ++ AA GDI Q P MYSA++ Sbjct: 66 DKRYLASFKLGVTTDTQDITGTVLSEQTPDADEARVRAAAAGLVGDIMQTPPMYSAVRVN 125 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLGEK 190 G++LYE AR+G+EV R ARP+TVY + F + N +++HCSKGTYIRT+I D+G Sbjct: 126 GQRLYELARRGVEVERAARPVTVYSIDFTACDVQANTFTIDVHCSKGTYIRTLIADIGAA 185 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + LRR + + + VT+E ++ + + LL P+++ Sbjct: 186 LGCGAVMTALRRTMAASFTLADCVTIEQAQQAAQDG---------VFGTLLRPVETAFCA 236 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGA---PLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P L + F NG + V + +F+G+ + +G + ++ Sbjct: 237 LPSAALNEKQTKMFLNGVRLDIGRVACKRTGDTYAVY-AHDRRFLGVAR-ERDGLLCMQK 294 Query: 308 LVVEY 312 L Sbjct: 295 LFTLE 299 >UniRef50_A5CXX8 tRNA pseudouridine synthase B n=3 Tax=Bacteria RepID=A5CXX8_VESOH Length = 302 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 135/312 (43%), Positives = 198/312 (63%), Gaps = 12/312 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R +GR ING++LLDK G+SSN ALQKVKR++ A +AGHTGALD A+G+LPICLG Sbjct: 1 MLRRNPKGRSINGIVLLDKDIGLSSNAALQKVKRLFFAKKAGHTGALDFSASGILPICLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 +ATK +Q+LL+ DKRY V +LGQ +DT D +G I++ +P S ++A +F+G+I Sbjct: 61 QATKIAQFLLEDDKRYFVRGKLGQISDTGDCEGSIIKTQPFEHLSDSEIAKVTASFKGNI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 QIP MYSALK G+ LY+ AR+GIEV RE+R +T+Y+++++ ++ L LE+ CSKGTY Sbjct: 121 FQIPPMYSALKRDGQPLYKLARKGIEVERESRLVTIYKIIYLGYKNGILSLEVTCSKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+I+D+GEKL CGAHVI LRR + + + +T L L + LD Sbjct: 181 IRTLIEDIGEKLSCGAHVIELRRTGFAHIDIRQTLTFSELEILASN-------DYQALDE 233 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV-TEGENGKFIGMGEID 298 ++ + V L S+ K G ++T +GL++V E +F+G+G+ Sbjct: 234 KILASEDMLLGLEDVYLSKVQSLDIKFGREIQTD---KQGLLKVKLFNEKKQFLGIGQCQ 290 Query: 299 DEGRVAPRRLVV 310 G + P++L + Sbjct: 291 GNGIILPKKLFI 302 >UniRef50_Q3A4A3 tRNA pseudouridine synthase B n=2 Tax=Desulfuromonadales RepID=TRUB_PELCD Length = 306 Score = 310 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 108/301 (35%), Positives = 163/301 (54%), Gaps = 19/301 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L++DKPQGM+S+ + +++R++ + GH G LDPLATG+L + LG+AT+ Q+L+ Sbjct: 1 MNGILIVDKPQGMTSHAVVGRIRRLFGLRKVGHAGTLDPLATGVLVVALGQATRILQFLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +K YR LG+ TDT D++GQIV A+ +A + G +Q+P MYSAL Sbjct: 61 QENKVYRASLVLGKTTDTQDSEGQIVATSDPGHIDAQSVADVCHSMVGSYDQMPPMYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G LY+ ARQG+EV R+ R IT+++L + E + ++HCSKGTY+RTI D+G Sbjct: 121 KKDGVPLYKLARQGVEVSRKPRRITIFDLQLLAVEPPNITFDVHCSKGTYVRTICHDIGV 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCGAH+ LRRL + + V+ VTLE + + + + LL+ + Sbjct: 181 KLGCGAHLTALRRLRSAPFDVKEAVTLEAIELMAPEDRPE----------LLLSIAEALR 230 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGK---FIGMGEIDDEGRVAPR 306 +YP +N+ G P + E G +G G P Sbjct: 231 EYPSLNVCPEGIKRLGYGIPPTADMIADT-----IDFEEGTQVLLVGPGGALAMATYVPS 285 Query: 307 R 307 R Sbjct: 286 R 286 >UniRef50_B9YSP0 tRNA pseudouridine synthase B n=3 Tax=Nostocaceae RepID=B9YSP0_ANAAZ Length = 309 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 105/303 (34%), Positives = 154/303 (50%), Gaps = 20/303 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L+KP G +S+D + +V+++ R GH G LDP ATG+L I LG+AT+ QYL Sbjct: 19 VQGFLNLNKPYGWTSHDCVARVRKLLRLKRVGHAGTLDPAATGILLIALGKATRLLQYLP 78 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y+ RLG RT T D +G+++ +P S + AL F G IEQIP YSA+ Sbjct: 79 GE-KAYQATVRLGVRTTTDDLEGEVITSQPCAGLSLADIKTALSQFIGKIEQIPPSYSAI 137 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDD 186 + G++LY+ AR+G V R + V + + + EL+L + CS GTYIR I D Sbjct: 138 QVDGQRLYDLARKGEMVLAPTRTVEVLNIEVLDWRDGDFPELDLALACSAGTYIRAIARD 197 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG L G + L R S + ++ VTL L ++ Q +P D+ Sbjct: 198 LGIVLNTGGTLAALIRTESSSFCLQDSVTLTDLETQLQTGTFQP-----------IPADA 246 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 P VN+ T + + G V L GLVRV E +F+G+ +I D + P+ Sbjct: 247 ALQTLPSVNISGTFAKKWCQGQQVPLD-IDLLGLVRVY--EEARFLGIAQIQDH-ILIPQ 302 Query: 307 RLV 309 + Sbjct: 303 MVF 305 >UniRef50_Q98BI6 tRNA pseudouridine synthase B n=2 Tax=Mesorhizobium RepID=TRUB_RHILO Length = 325 Score = 309 bits (792), Expect = 9e-83, Method: Composition-based stats. Identities = 107/325 (32%), Positives = 163/325 (50%), Gaps = 16/325 (4%) Query: 1 MSRP-RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M R +++GR ++G ++LDKP GM S +A+ K+K ++ A +AGH G LDPLA+GMLPI L Sbjct: 1 MGRRGKKKGRPVSGWVVLDKPVGMGSTEAVSKIKWLFQAEKAGHAGTLDPLASGMLPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 GEATK Y+ D K YR GQ T D +G + + + + ++ A L + G I Sbjct: 61 GEATKTVPYVQDGAKIYRFTVAWGQERSTDDLEGPVTKSSDLRPAEAEVKALLPKYTGVI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q P +SA+K G++ Y+ AR+G V AR I + L I H + E+ C KGTY Sbjct: 121 MQTPPQFSAIKIAGERAYDLAREGETVDIPAREIEIGRLDIIEHHADHTVFEVECGKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE---- 235 +R++ D+G LGC H+ LRR+ V + E VT+ L A+ +D P Sbjct: 181 VRSLARDMGRDLGCFGHISDLRRVEVEPFTSEDFVTIAELEAARFGAQGEDKPEPADDAD 240 Query: 236 ---------LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTE 285 +D LL+ + P + + ++ + GNPV G Sbjct: 241 AIDVPVDFGAIDALLVDTSAALDCLPQIAISDDAATKIRLGNPVIIRGRDAPVEAEEACA 300 Query: 286 GENGKFIGMGEIDDEGRVAPRRLVV 310 GK + +G I ++G P+R+ Sbjct: 301 TARGKLVAIGAI-EQGMFKPKRVFA 324 >UniRef50_C4GBF3 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GBF3_9FIRM Length = 315 Score = 309 bits (792), Expect = 9e-83, Method: Composition-based stats. Identities = 110/324 (33%), Positives = 170/324 (52%), Gaps = 36/324 (11%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L + K G +S D + K++ I + + GHTG LDP A G+LP+C+G ATK + + Sbjct: 3 SGILNVYKEPGFTSFDVVAKLRGILHIRKIGHTGTLDPAARGVLPVCIGRATKAVNLMAN 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y +LG RTD+ D GQI+E PV+ S +++ + +F G +QIP MYSA K Sbjct: 63 WTKTYIADMQLGIRTDSQDMTGQILERNPVSVSEDEIQREVASFFGPQDQIPPMYSARKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GK+LY YARQGIE+ R A I +Y++ + E + +E+ CSKGTYIRT+ D+G+ L Sbjct: 123 GGKRLYHYARQGIELERRASHIVIYDIQILSMELPHVIMEVTCSKGTYIRTLCSDIGDAL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GCGA + L R+ V + + + L+ ++E L+ +L P+D+ +D Sbjct: 183 GCGASMAALERIRVGDFDSKNALRLDQIQEAAAAGR---------LEDILYPVDAVFADL 233 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE-----------------------N 288 P + LP + KNG P+ EG+ + EGE + Sbjct: 234 PALKLPEGLTKAGKNGAPI---AEKTEGITCLYEGEKQSRTGSDWRKAGLGLAFRVYLSD 290 Query: 289 GKFIGMGEIDDEGRVAPRRLVVEY 312 G F+G+ +EG + + E Sbjct: 291 GVFLGIYVRCEEG-LRLKNFFYEE 313 >UniRef50_B0NZN2 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NZN2_9CLOT Length = 299 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 150/306 (49%), Gaps = 16/306 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L + K + +S+D + K++ I + GHTG LDP A G+LP+CLG+ TK L Sbjct: 3 NGLLNIYKEKDFTSHDVVAKLRGILRQKKIGHTGTLDPNAEGVLPVCLGKGTKLCDMLTG 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K+Y+V + TDT D G + + + + +F G+ +Q+P MYSA K Sbjct: 63 TKKQYKVSFVFEKETDTEDIWGTVTKTHEPLKQDAPIKDTILSFVGEYDQVPPMYSAKKI 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GKKLYE AR+G + R+ I +Y++ I E+ + + CSKGTYIR++ D+G KL Sbjct: 123 NGKKLYELAREGKIIERKPERIRIYDISDIEISYPEVTMTVTCSKGTYIRSLCRDIGHKL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GA + L R S + +E TL + E V+ + ++ ++P++ Y Sbjct: 183 QNGACMTKLVRTRSSGFQLEYAHTLSEIEEAVKTGK---------IEEWIIPIEKVFLKY 233 Query: 252 PVVNLPLTSSVYFKNGNPVRTS-----GAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 + NGNP++ +RV + E+ +FIG+ P Sbjct: 234 QKGTVKKDYDKVLFNGNPLKKEMFYEIDLDTTKKLRVYD-ESEQFIGIYYWKKN-MFFPD 291 Query: 307 RLVVEY 312 ++ + Sbjct: 292 KIFYDN 297 >UniRef50_A7NAR1 tRNA pseudouridine synthase B n=19 Tax=Francisella RepID=TRUB_FRATF Length = 302 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 179/307 (58%), Gaps = 16/307 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 ++ ++NGV++++K + +SSN LQ++K ++NA +AGHTG LDP+ATG+LPIC G ATK Sbjct: 2 KKNRLNLNGVVVINKAKDISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATK 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQI 122 +QYLLD+DK Y RLG TD+ DA+G+I+ + SAE L L F GD+ QI Sbjct: 62 IAQYLLDADKEYIATIRLGIETDSGDAEGEIIAKSINIPELSAEYLEIVLAKFSGDVVQI 121 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALKY G+ LY+ AR+G V ++R I +YEL + + L++ + CSKGTYIR+ Sbjct: 122 PPMYSALKYNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRS 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+G+ LGCG H+I L+R + + LE L++L + + I Sbjct: 182 LAIDIGKTLGCGGHLIALQRTQSGPFKLSEAFRLEQLKDLSFEQKIASITN--------- 232 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 ++S D P+ +L + L+G VR+ + E KF+ + E D+G+ Sbjct: 233 -IESVFIDKPIYSLLEEEKNDLYK-RGLFADKPHLDGTVRIYDVE--KFVAIAEF-DKGK 287 Query: 303 VAPRRLV 309 + ++ Sbjct: 288 LINKKFF 294 >UniRef50_Q89AF6 tRNA pseudouridine synthase B n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=TRUB_BUCBP Length = 302 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 149/304 (49%), Positives = 208/304 (68%), Gaps = 9/304 (2%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 R I+G++L+DKP G+SS++ LQKVK I + GHTG LDPLATGMLP+C G ATKFSQ+ Sbjct: 6 RSIDGIILIDKPYGLSSHETLQKVKGILKIKKMGHTGTLDPLATGMLPMCCGRATKFSQF 65 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 L++ KRYRVIA+LGQ+T TSD++GQI+ RP+TF+ QL L +F G I+QIPSMYSA Sbjct: 66 LMNFKKRYRVIAKLGQKTSTSDSEGQIIHVRPITFTNLQLQKVLKSFHGKIKQIPSMYSA 125 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFI--RHEGNELELEIHCSKGTYIRTIIDD 186 +KY G LY+YARQGI + R+ R +YEL + ++ LEL+I CSKGTYIRT+I+D Sbjct: 126 IKYHGHALYKYARQGIVISRKVRDAIIYELKVLGYSYKHKYLELDIICSKGTYIRTLIED 185 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +GEKL CGAHVI LRRL V Y +M+ ++ L +LV+ +L+ +L+ +D+ Sbjct: 186 VGEKLNCGAHVISLRRLQVGNYTSFQMIDIKTLNKLVK-------YNINVLEHILLSVDN 238 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 S +P VN+ +NG V+T + VR+TEG N +FIG+G+I++ + Sbjct: 239 AISCFPEVNIVPNVIKNLQNGQKVKTHSGFINQFVRITEGINRRFIGIGKINNINELYSY 298 Query: 307 RLVV 310 RL++ Sbjct: 299 RLII 302 >UniRef50_C6MD69 tRNA pseudouridine synthase B n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MD69_9PROT Length = 319 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 125/315 (39%), Positives = 180/315 (57%), Gaps = 19/315 (6%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + R +I+GVLLLDKP G+SSN ALQ K+++ A + GHTG LDP+ATG+L IC GEATK Sbjct: 3 KSRKLNISGVLLLDKPYGVSSNKALQTAKQLFLAAKCGHTGTLDPMATGLLAICFGEATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQI--VEERPVTFSAEQLAAALDTFRGDIEQI 122 FS LL ++K Y +LG + T DA+G I V + + AL F G I+Q+ Sbjct: 63 FSSVLLGANKTYEATLKLGFMSTTGDAEGIISPVAATVQNPTLGECQQALSQFIGKIKQM 122 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P M+SALK+ GK LY YAR+G + R+AR ITVY++ NEL+L I C GTYIR Sbjct: 123 PPMFSALKHHGKPLYCYARKGEIIERQAREITVYDIQIQSLHCNELQLSIQCGTGTYIRV 182 Query: 183 IIDDLGEKLGC-GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 + +D+G+ LGC GA++ LRR A+ ++ + + TL L + D L Sbjct: 183 LAEDIGKALGCGGAYLTGLRRTAIDRFNLSQAYTLSALENMSASER----------DNSL 232 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS-----GAPLEGLVRVTEGENGKFIGMGE 296 +P+D DYP + L S+++ + G + VR+ E +F+G+GE Sbjct: 233 LPVDHLLQDYPSITLDRLSALHIQQGRNILCPPGRHGMIKNGKQVRLYT-EKNQFLGLGE 291 Query: 297 IDDEGRVAPRRLVVE 311 I E +A +RL+ + Sbjct: 292 ITIEQTIAVKRLLSD 306 >UniRef50_Q5X1C5 tRNA pseudouridine synthase B n=4 Tax=Legionella pneumophila RepID=TRUB_LEGPA Length = 303 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 125/301 (41%), Positives = 182/301 (60%), Gaps = 11/301 (3%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 I+G+LLL+KPQGM+SN ALQK K ++ A +AGHTG+LDPLATGMLP+C GEATK QYL Sbjct: 9 SIDGILLLNKPQGMTSNAALQKAKHLFGAKKAGHTGSLDPLATGMLPLCFGEATKICQYL 68 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 L++DK Y I RLG +T+T+D G+++ T S E++ A L+ ++G I+QIPSM+SA Sbjct: 69 LNADKSYETIGRLGSKTNTADCTGEVIFCIENYTVSHEEMIATLEKYKGKIKQIPSMFSA 128 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK++G LY AR+GIE+ R+AR I + +L + +G L + CSKGTYIR +++D+G Sbjct: 129 LKHKGTPLYRLAREGIEIERKARDIVISQLKLEQFDGECFTLTVSCSKGTYIRNLVEDIG 188 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 + L GAH+ L RL + + RM TL+ L+++ L+P+D Sbjct: 189 DTLKAGAHMTKLHRLYTAGFENNRMYTLDELQDMPLSQRL----------ACLIPIDQAI 238 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 V L + + G + +EG GE +FIG+G+ G + +RL Sbjct: 239 QHLTPVILSDSEVTAIRQGKVISNKTGAVEGEDLRLYGEQSQFIGIGQALIHGDIKAKRL 298 Query: 309 V 309 V Sbjct: 299 V 299 >UniRef50_B1YI60 tRNA pseudouridine synthase B n=2 Tax=Exiguobacterium RepID=B1YI60_EXIS2 Length = 302 Score = 306 bits (784), Expect = 8e-82, Method: Composition-based stats. Identities = 107/296 (36%), Positives = 152/296 (51%), Gaps = 19/296 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GVL LDKP GM+S+D + +++R++ + GHTG LDP TG+LPICLG ATK ++++ D Sbjct: 5 GVLPLDKPAGMTSHDCVFRLRRLFQTKKVGHTGTLDPEVTGVLPICLGRATKLARFITDE 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTF---SAEQLAAALDTFRGDIEQIPSMYSAL 129 KRY +G T T DA G+ V E PVT + +Q+ L G IEQ P YSA+ Sbjct: 65 GKRYVAEVTIGYATTTEDAHGETVRETPVTPASITEQQVDEILQQLTGQIEQTPPYYSAV 124 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR-----HEGNELELEIHCSKGTYIRTII 184 K GKKLYEYAR+GIEV R R + + L ++EI C KGTYIRT+ Sbjct: 125 KVNGKKLYEYARKGIEVERPTRTVQIDTLERTSGLTFADGLCRFQIEIACGKGTYIRTLA 184 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 ++GE+LG AH+ LRR + VTL L E ++P+ Sbjct: 185 VEIGEQLGYAAHMSELRRTSSGMMSETEAVTLATLEA---------CETVEERMQYVLPI 235 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 + +P + + ++ NG + G P+E E G + + +D E Sbjct: 236 EQVIQKWPRLTVNAETAARVLNGAKL--PGIPVEFERFTVYNEEGIPLAIYRLDSE 289 >UniRef50_A5VJE2 tRNA pseudouridine synthase B n=18 Tax=Lactobacillus RepID=TRUB_LACRD Length = 301 Score = 305 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 96/309 (31%), Positives = 156/309 (50%), Gaps = 19/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ L K +GM+S + ++++I + GH+G LDP G+LPIC+G ATK YL+ Sbjct: 1 MDGIIPLYKERGMTSFACVSRLRQILKTKKIGHSGTLDPGVAGVLPICVGNATKVVDYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 S K+Y+ +G T T D DG +EE+ V ++ +A+++ G I QIP MYSA Sbjct: 61 QSGKQYQGELLIGFATTTQDLDGDKIEEKVVADEIPTSEILSAMNSLTGTIIQIPPMYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIR------HEGNELELEIHCSKGTYIRT 182 +K GKKLYEYAR G V R R +T+ + + ++ + + CSKGTYIRT Sbjct: 121 VKVNGKKLYEYARAGETVERPKRQVTISKFELLSSKYDKKNKQQRIRFNVECSKGTYIRT 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 ++ DL KLG + L RL + +++ ++L+ +R+ V A + L L Sbjct: 181 LVVDLARKLGYPGVMSLLTRLKSGGFTLDQTLSLDDVRDAV---------ATQTLQQYLY 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID-DEG 301 P+D DYP + + + +NG + S V +G+ + D Sbjct: 232 PLDYALKDYPQLTIQVAQWKKVQNGGWLSPSELNTSEKEIVLSF-DGQVKALYHFDPKNK 290 Query: 302 RVAPRRLVV 310 P ++ Sbjct: 291 MYKPTKMFA 299 >UniRef50_A1AMM4 tRNA pseudouridine synthase B n=2 Tax=Desulfuromonadales RepID=A1AMM4_PELPD Length = 304 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 102/312 (32%), Positives = 157/312 (50%), Gaps = 20/312 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+G ++DKP G+SS+D + +V+RI R GHTG LDP ATG+LP+ + +ATK +L Sbjct: 2 ISGFFVIDKPAGISSHDVVSRVRRILGTRRVGHTGTLDPFATGVLPVAVNDATKVIPFLD 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y+ + RLG TDT D G+I+ E + S E+ L F G I Q+P M+SA+ Sbjct: 62 EGVKCYQALLRLGVVTDTLDMTGRILAEGDYSSVSRERFLELLTRFCGVISQVPPMFSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G+ LY+ ARQGIEV R AR + ++ L + E L + CS+GTY+R++ DDLG Sbjct: 122 KRDGQPLYKLARQGIEVERRARQVEIHSLELLSFEPPLACLRVSCSRGTYVRSLADDLGA 181 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LGCGA + LRR+A + + +TL L + E D L + + + Sbjct: 182 ELGCGASLQELRRIASGPFHLSSAITLATLEQAKEGGMS---------DALCLDPYAALA 232 Query: 250 DYPVVNLPLTSSVYFKNGN------PVRTSGAPLEGLVRVTEGENGKFIGMGEID----D 299 P + L ++G + ++ NG + I+ Sbjct: 233 HLPDIPLSDAGLAKVRHGRSPEWGETLLSAPCEGTEAGLARLSRNGSLAAVARIEPLPYG 292 Query: 300 EGRVAPRRLVVE 311 R+ +R+ Sbjct: 293 GSRLVLKRVFCN 304 >UniRef50_A7VT62 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A7VT62_9CLOT Length = 297 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 111/307 (36%), Positives = 174/307 (56%), Gaps = 18/307 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++++DKP +S D + ++ ++ + GHTG LDP+ATG+LPI +G ATK Sbjct: 1 MNGIIVIDKPPRFTSFDVVAVMRGLFGTKKVGHTGTLDPMATGVLPILIGSATKAQDLTP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DS K Y RLG TDT D+ G + E PVT + L +AL FRG+I Q+P MYSA++ Sbjct: 61 DSGKEYVAGFRLGVVTDTEDSTGTVKETFPVTADEKALESALSHFRGEILQVPPMYSAIQ 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLG 188 G +LY+ AR+GIEV REARP+T++EL + + E E + + CSKGTY+RT+ DLG Sbjct: 121 KNGVRLYDLARKGIEVEREARPVTIHELELLEYRQETGEGSIRVRCSKGTYVRTLCADLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 ++LGCG + LRR A Y ++ + L+ + + A +L+ L P+DS Sbjct: 181 KRLGCGGIMTSLRRTAACGYTIKDSIPLDE---------AKSLKAEGVLEQRLRPVDSLF 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTS-----GAPLEGLVRVTEGENGKFIGMGEI-DDEGR 302 +Y + + + F+NG + +RV G +G F+G+G + ++ Sbjct: 232 LEYRPLKVTGPQAKRFQNGGALALERTGVKKEADGANIRVY-GPDGIFLGLGRVHREKNE 290 Query: 303 VAPRRLV 309 ++ +L Sbjct: 291 LSILKLF 297 >UniRef50_Q2RJM2 tRNA pseudouridine synthase B n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=TRUB_MOOTA Length = 305 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 101/312 (32%), Positives = 165/312 (52%), Gaps = 26/312 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G + + KP G++S+D +Q ++R+ R GH G LDPLA G+LP+ +G AT+ +YL Sbjct: 4 GFVNVLKPPGLTSHDVVQNLRRLLKVKRIGHGGTLDPLAAGVLPVAVGTATRLLEYLQGG 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK YR LG +TDT D G+++ +P + + L AA F G I Q+P M SA+ Y Sbjct: 64 DKAYRAEFILGLKTDTQDLGGRVLARKPCPPFTEKDLQAATRPFTGTIRQVPPMVSAVHY 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGN----ELELEIHCSKGTYIRTIIDDL 187 QG++LYE AR+G+EV R AR +T++E IR + ++I CS+GTYIRT+ D Sbjct: 124 QGRRLYELAREGLEVERPARQVTIHEFRLIRAWPDGPYYRALIDITCSRGTYIRTLGADW 183 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+ LG GA + +L R + + TLE + +++ E L+P + Sbjct: 184 GDYLGVGATLAFLLRTRAGSFRLTDAWTLEEIAGAIDRGE----------RTFLLPPAAG 233 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVR------TSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 + PV+ +P + NG ++ +VR+ GE G+ + + ++ + Sbjct: 234 LAHLPVIIVPGEFIRHVSNGVAIKGDVCRPLPSLREGDIVRLETGE-GQLLALARVEPDT 292 Query: 302 R----VAPRRLV 309 R + P +++ Sbjct: 293 RGSFLLKPHKVL 304 >UniRef50_C7H6A8 tRNA pseudouridine synthase B n=2 Tax=Faecalibacterium prausnitzii RepID=C7H6A8_9FIRM Length = 295 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 162/303 (53%), Gaps = 11/303 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G+L++DKP +S D + K++ I + GH+G LDP+ATG+LP+ G A+K L Sbjct: 2 MQGILIVDKPTDWTSFDVIAKLRGILGTRKLGHSGTLDPMATGVLPVFCGGASKAVDLQL 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K YR + RLGQRTDT D G ++E PVT ++L A L F G Q P MYSA+K Sbjct: 62 DHTKAYRAVLRLGQRTDTGDVTGTVLETTPVTAGEQELLAVLPQFLGPRMQTPPMYSAVK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTYIRTIIDDLGE 189 G+ LY+ AR+G V R+ARPI + ++ + NE L + CSKGTYIR +++++ E Sbjct: 122 INGQPLYKLAREGKTVERKARPIEILDIRYEGSPAENEYALTVKCSKGTYIRVLLEEIAE 181 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +G + LRR+A Y TLE ++ + E L L++P++S + Sbjct: 182 AMGQKGTMSALRRVAAGVYSEADAHTLEEIQAAKDAG-------PEALQALMLPVESVFA 234 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P++ + NG P + +G RV G+F+G+ + G + +L Sbjct: 235 SLPLLVADERVEQHLYNGCP-TSRYPAADGRYRVRNA-GGQFLGLANVV-NGVLKVEKLF 291 Query: 310 VEY 312 VE Sbjct: 292 VER 294 >UniRef50_A8ZZ61 tRNA pseudouridine synthase B n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZ61_DESOH Length = 303 Score = 304 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 149/300 (49%), Gaps = 19/300 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+++++KP G++S + VKR A + GH G LDP ATG+L + AT+ +++ L Sbjct: 6 DGIIVVNKPAGITSAKVVALVKRHTGARKVGHAGTLDPFATGVLVCLINRATRLAEFFLA 65 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV---TFSAEQLAAALDTFRGDIEQIPSMYSA 128 SDK Y + LG TDT D G + T S + + + +F G+ EQ P +SA Sbjct: 66 SDKTYAAVMCLGVETDTQDRTGTVTAVCDTSLQTVSDDAIRRVMTSFEGEGEQRPPAFSA 125 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K+QG LY ARQG+ V + ARP+ + L + E+ CS GTYIRT+ D+G Sbjct: 126 VKHQGVPLYRLARQGVYVEKPARPVVISSLTVQEICWPMVRFEVTCSSGTYIRTLCADMG 185 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCG H+ L R + + R V LEHL +L + + D LL+PM Sbjct: 186 RALGCGGHLYALERTRAGGFDLARAVDLEHLADLCKAGKATD---------LLVPMSEAL 236 Query: 249 SDYPVVNLPLTSSVYFKNGNPVR------TSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 S P P + + G + A EG +VT+ +G+ + + + +E Sbjct: 237 SGMPRFTAPPSLAGRIAAGGQLTAADFAGFPAADAEGYFQVTDA-DGRLLAVVQRHEETY 295 >UniRef50_Q057K1 TRNA pseudouridine 55 synthetase n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057K1_BUCCC Length = 311 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 125/307 (40%), Positives = 196/307 (63%), Gaps = 2/307 (0%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKF 65 + ++ NG+LLLDKP+G+SSN LQ++K+I+ A +AG+TG+LDP+ATGMLPI G ATKF Sbjct: 4 QNNKNYNGILLLDKPKGISSNGILQQIKKIFLAKKAGYTGSLDPMATGMLPILFGNATKF 63 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 S+YL DS K+Y VIA+LG+ T T D G+ ++ + + + + L++F G+I Q+P M Sbjct: 64 SKYLTDSAKKYHVIAKLGETTSTGDLSGKKLKIKSININTNDIYKILNSFIGEIYQVPPM 123 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA+KY G LY+YAR GI VPR+ R + +Y++ FI+ LE + CSKGTYIR++++ Sbjct: 124 FSAIKYNGIPLYKYARLGILVPRKKRKLFIYKINFIQFVNPFLEFTVICSKGTYIRSLVN 183 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR--ELVEQAEQQDIPAAELLDPLLMP 243 D+G KL CG HVI+LRRL + Y ++VTL +L E + +L+ L+P Sbjct: 184 DIGNKLFCGGHVIFLRRLYIKPYNSSKLVTLSNLHFIENKNIEQIHKFYLFNMLNTFLLP 243 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 + S YP++ + + F+ + + GLV+V +N F+G+G+I+ G + Sbjct: 244 VSSFFFKYPIIKILHSDINNFQKKIKIALNFFSTIGLVQVITKKNNIFLGIGKINKFGIL 303 Query: 304 APRRLVV 310 P+ ++ Sbjct: 304 TPKCVLC 310 >UniRef50_A5EWY7 TRNA pseudouridine synthase B n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWY7_DICNV Length = 297 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 115/303 (37%), Positives = 166/303 (54%), Gaps = 16/303 (5%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 RDING+LLL+KP+G+SSN ALQK + ++ A +AGH G LDP A+G+LP+ LGEATKFSQ Sbjct: 2 KRDINGILLLNKPRGISSNSALQKARALFQAKKAGHGGTLDPFASGLLPLFLGEATKFSQ 61 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMY 126 Y+L +DK+Y V R G+ T T D +G+ + P + L F+GD +Q P ++ Sbjct: 62 YMLGADKQYLVGIRFGRETTTDDCNGETLNTLPPPDLLNLDWQSVLAHFQGDYQQTPPIF 121 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SALK GK+ YE AR+GI R I + I + +L I CSKG+YIR D Sbjct: 122 SALKINGKRAYELAREGIIPEIAPRIIHIASCSVIAVNKDYAQLRIRCSKGSYIRAFARD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG L AH L R A + + + L L+ L D LL+P++ Sbjct: 182 LGRFLNSAAHAETLIREASGHFALNQAHDLSTLKTLSLSER----------DALLLPIEY 231 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 + P + +P + +GN + + GL ++ +G F+G+GE D GR+ P+ Sbjct: 232 ALKNIPPLAIPEDKIRFICHGNDIAITA--TNGLYQL--SADGHFLGIGEARD-GRLYPK 286 Query: 307 RLV 309 RL+ Sbjct: 287 RLL 289 >UniRef50_Q01SZ5 tRNA pseudouridine synthase B n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=TRUB_SOLUE Length = 293 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 160/302 (52%), Gaps = 14/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+++DKP+G +S+D + KV+RI + GH G LDP+ATG+LP+ + AT+ +Q+ Sbjct: 1 MDGVIVIDKPEGWTSHDVVNKVRRIAKTKKVGHLGTLDPIATGVLPLVIERATRLAQFYT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 S+K Y + R G T + D G+ E+ V +AEQL AL+ FRG+ Q P SA Sbjct: 61 RSEKIYEGLVRFGWSTSSYDRAGEPTSEKVEVQLTAEQLEHALENFRGEFLQRPPAVSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K +GK+ YE AR+ + V E + VYEL + EGN L HCS GTY+R+I DLG+ Sbjct: 121 KVEGKRSYELARKNMAVELEPVKVHVYELTLLALEGNLARLRAHCSGGTYMRSIAHDLGQ 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LGCGAH+ LRRLA ++ +++ TLE L L + L ++P Sbjct: 181 ALGCGAHLQELRRLASGEFELDQARTLEQLESLAAEDR---------LPDAIVPAGKLLP 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGA---PLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 +P V + ++ +NG S P V+ G + +GE+ P Sbjct: 232 AFPSVFVDEITAAQIRNGRDFPASPFRSQPASKYVKAVT-RTGDLVAIGEVVLPNLYHPT 290 Query: 307 RL 308 + Sbjct: 291 VV 292 >UniRef50_C9KKC7 tRNA pseudouridine synthase B n=3 Tax=Veillonellaceae RepID=C9KKC7_9FIRM Length = 298 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 152/310 (49%), Gaps = 22/310 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP GMSS+D + V+++ + R GH G LDP A G+LPI +G+A + +YL Sbjct: 2 MDGFLNILKPPGMSSHDVIGAVRKVLHMKRVGHAGTLDPAAAGVLPIAVGQAARLIEYLE 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQIPSMYSA 128 +DK YR G TD+ D G+I EE S + + AL F G I Q P +SA Sbjct: 62 LADKTYRAELTFGFATDSGDDTGEITEEVTDFTMPSQQAIEHALLGFTGKIRQTPPAHSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDD 186 +K GK+ + R+G EV +R +T++ L + + E ++ ++ CSKGTYIR++ D Sbjct: 122 IKIGGKRACDLLREGKEVEIPSREVTIHALDIVAYHPEEKKILFDVQCSKGTYIRSLCLD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G LG A + +L R V + + +TLE L E E A ++ Sbjct: 182 IGAALGLPATMSFLVRSRVGDFALADALTLEELAEAGESA--------------ILEPAH 227 Query: 247 PASDYPVVNLPLTSSVYFKNG-NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-GRVA 304 S +L F NG P ++RV G+F+G+G D V Sbjct: 228 FLSHLERYDLDPRREKPFCNGLGTGERRHVPETDILRVYSA--GRFLGIGRYDRRSQEVI 285 Query: 305 PRRLVVEYPA 314 P ++V PA Sbjct: 286 PAKVVCREPA 295 >UniRef50_B5YJI4 tRNA pseudouridine synthase B n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJI4_THEYD Length = 302 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 172/304 (56%), Gaps = 5/304 (1%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N V++L+KP+G +S D + KVK+I +AGH G LDP+ATG+L +C+ EATK + +L+ Sbjct: 1 MNAVVVLNKPKGFTSQDTVTKVKKILKVKKAGHAGTLDPMATGILIVCINEATKITPFLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + +K Y A+ G TDT DA+G+IV EQ+ + L+ F G+I QIP MYSA+ Sbjct: 61 ELEKEYVFKAKFGISTDTYDAEGKIVRVVEDFKLEREQVESILEEFTGEIMQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GK L+E AR+G+E+ R+ + + ++ + E + + CSKGTY+R++ D+GE Sbjct: 121 KVGGKPLHELARKGVEIERKPKKVIIHSIKIESFEPPFVTFRVVCSKGTYVRSLCHDIGE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL GAH++ L R + ++ VE + LE L+ L+ + + + +D Sbjct: 181 KLRIGAHIVELTRTRIGEFRVEESIELEELKSLISNNLDSSAFSFQP-KKGIFSIDQALY 239 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTS-GAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 P V + F NGNPV+ G G V+V + GK +G+G + + P R+ Sbjct: 240 FLPSVTMQDYIIPRFLNGNPVKIPSGIVPAGWVKVKDT-RGKILGIG-YGNGVIIKPERI 297 Query: 309 VVEY 312 + E Sbjct: 298 IWEE 301 >UniRef50_Q2RMR8 tRNA pseudouridine synthase B n=11 Tax=Alphaproteobacteria RepID=TRUB_RHORT Length = 308 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 110/317 (34%), Positives = 170/317 (53%), Gaps = 19/317 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSR RRRG+ I+G L +DKP G++S D + +++R +A + GH G LDPLA+G+LPI G Sbjct: 1 MSR-RRRGQAIHGWLAIDKPVGITSTDVVNRLRRTMDAAKVGHGGTLDPLASGVLPIAFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK Y++D K Y ++ G+ DT D +G++++ V A+ + A L F G+IE Sbjct: 60 EATKTVSYVMDGTKVYHMVVGWGEARDTDDREGKVIDTSDVRPDAQAITAMLARFTGEIE 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL-ELEIHCSKGTY 179 Q+P +YSA+K +G++ Y+ AR V ++R I + +L + + I KG Y Sbjct: 120 QVPPIYSAVKVEGRRSYDLARADQAVELKSRKILIKDLTLLETSTPDFGHFRIVSGKGAY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R++ DL LG HV+ LRRLA + E ++L+ + L A Sbjct: 180 MRSLARDLALALGTVGHVVALRRLACGPFTAETAISLDMVDALGHDAPHS---------E 230 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT----SGAPLEGLVR---VTEGENGKFI 292 L+P+++ +D P V L + G PV S PL GL + V NGK + Sbjct: 231 SLLPIEAALADIPAVPLTEAEARRLSQGQPVSLLHLASRTPLNGLAQGETVQALLNGKLV 290 Query: 293 GMGEIDDEGRVAPRRLV 309 + +I EG + P R+V Sbjct: 291 ALAKIV-EGEIRPLRVV 306 >UniRef50_Q1G9Q1 tRNA pseudouridine synthase B n=27 Tax=Lactobacillus RepID=TRUB_LACDA Length = 298 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 159/307 (51%), Gaps = 24/307 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG++++DK GM+S D + K++R+ + GH G LDP TG+LPI LG+ATK + + + Sbjct: 3 NGIIVIDKAAGMTSGDVVYKLRRLLKQKKIGHAGTLDPEVTGVLPIALGQATKLIELMHE 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TD+ D +G+I+ ER + S + + AA++ G+I Q P +YSA+ Sbjct: 63 RPKAYVGEGMLGLATDSYDLEGKILAERALSQPVSDQAIKAAMEKLIGEIVQQPPIYSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFI-------RHEGNELELEIHCSKGTYIRT 182 + GK+LYEYAR+GI V R R + V+ E+ CSKGTY+R+ Sbjct: 123 RVNGKRLYEYAREGIPVERPKRTVQVFLYDLTAPSQFDPEKGRQTFTYEVECSKGTYVRS 182 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 +++DLGE+LG A + LRR A S Y ++ VTLE L + ++ AE + Sbjct: 183 LVNDLGEELGLPAVMTKLRRTASSGYKLQDAVTLEELADNLDHAE-----------DYIQ 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 P+DS +DY V+L KNG ++ +V N + +G Sbjct: 232 PIDSFFADYQQVDLDAALWQQVKNGAWIKLPLDAD----KVALRYNKTVKAIYRAKGQGL 287 Query: 303 VAPRRLV 309 P ++ Sbjct: 288 YCPDLML 294 >UniRef50_C8NA97 tRNA pseudouridine synthase B n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA97_9GAMM Length = 298 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 122/315 (38%), Positives = 168/315 (53%), Gaps = 18/315 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M + ++ I+GVLLLDKP G+SSN ALQ+ + +Y A +AGH G LDP ATG+LP+ G Sbjct: 1 MGKRKK----IDGVLLLDKPAGISSNQALQQARWLYQAEKAGHGGTLDPFATGLLPVLFG 56 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDI 119 EA+KF +Y LD DK Y G TDT D G ++ E P A A F G Sbjct: 57 EASKFGRYFLDGDKAYEATLAFGTETDTGDLSGAVIREAAPPPLDAVDWVALCAGFSGVQ 116 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q+P +YSALK G++ Y AR+G EAR + ++EL F+ +G+ + CSKGTY Sbjct: 117 RQVPPVYSALKVGGERAYALARRGELPQLEAREVVIHELRFLGMDGDGARFFVRCSKGTY 176 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR+++ D+ LG H LRR+AV+ M L LR E L Sbjct: 177 IRSLLRDMAAALGSAGHTHALRRVAVAGLTA--MTPLATLRAWQEAG------DMTALQA 228 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 LL+P+D + P V +P + +NGN + + G V + +G +F G+GE D Sbjct: 229 LLLPLDCCVAHLPRVVVPPEKLRFIRNGNDIACAAPH--GEVALYDG--ARFFGVGEARD 284 Query: 300 EGRVAPRRLVVEYPA 314 GRV P+RL PA Sbjct: 285 -GRVFPQRLCALPPA 298 >UniRef50_A8VS66 Pseudouridine synthase-like protein n=2 Tax=Bacillus RepID=A8VS66_9BACI Length = 317 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 103/321 (32%), Positives = 154/321 (47%), Gaps = 22/321 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M + G+L L KP+GM+S A++K I +AGHTG LDP G+LPIC+G Sbjct: 1 MQKEAIMTNSKAGILPLWKPRGMTSFQAVRKAGGILKTKKAGHTGTLDPDVDGVLPICVG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGD 118 ATK +YL ++K Y +G T+T DA G+ VE R F+ +++ L G+ Sbjct: 61 RATKIVEYLTAAEKVYSGEVTIGWSTETEDASGETVETRMPEEAFTEQEVDDMLVQLTGE 120 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE------LELEI 172 +QIP MYSA+K GK+LYEYAR+G+ V R R ITV+ L Sbjct: 121 QKQIPPMYSAVKVNGKRLYEYAREGVSVTRPVRTITVHSLERTSPVYQHDNGSVSFTFTC 180 Query: 173 HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIP 232 HCSKGTYIRT+ +GEKLG AH+ L R A + E VT E + + ++ Sbjct: 181 HCSKGTYIRTLAVTMGEKLGYPAHMSRLTRDASGSFSKEDCVTFEDMEKYADEQP----- 235 Query: 233 AAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG--LVRVTEGENGK 290 + +L+P++ P + + G + + V +G+ Sbjct: 236 -----EHILLPIEHAFEHVPSLTVEDDDLTRILQGGILPLPKQMDDPDIPFFVIFDPDGR 290 Query: 291 FIGMGEID--DEGRVAPRRLV 309 I + + D G + P +++ Sbjct: 291 LIALYKKDPKRHGMMRPEKMI 311 >UniRef50_B3WER2 tRNA pseudouridine synthase B n=9 Tax=Lactobacillus RepID=TRUB_LACCB Length = 306 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 100/312 (32%), Positives = 152/312 (48%), Gaps = 23/312 (7%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 +G +NG+L L KP GM+S DA+ ++I + GH+G LDP G+LP+ +G TK Sbjct: 2 KGTAMNGILPLYKPTGMTSADAVYHARKILGIKKIGHSGTLDPNVDGVLPLAIGAGTKAV 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPS 124 L+ S K Y LG T T D DG++V++ P+ F+A+QL AAL + G+I QIP Sbjct: 62 PQLMASGKVYTGEITLGFATTTEDLDGEVVDKTPLTQPFTADQLDAALTAWTGNITQIPP 121 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-------EGNELELEIHCSKG 177 M+SA+K G++LYEYAR G V R R TV + E+H SKG Sbjct: 122 MFSAVKVNGRRLYEYARAGETVKRPERQATVSQFTRTDEPVFSATDGTQRFRFEVHVSKG 181 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIRT+ D+G+ LG A + L R+ + +++ V++E L+ L Sbjct: 182 TYIRTLAVDVGKTLGVAAVMSQLTRVKSGGFTLKQAVSIEQLKAHAAAG---------TL 232 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI 297 ++ P+D +D P V+L + +G + RV G + Sbjct: 233 ADVIQPIDIAFADLPQVDLTVEQFEAISHGRFLSLDQQTP----RVRLHFAGVLKAIYRR 288 Query: 298 DDEGRVAPRRLV 309 +D+ P + Sbjct: 289 EDDQ-YRPDLMF 299 >UniRef50_Q3BRP7 tRNA pseudouridine synthase B n=20 Tax=Xanthomonadaceae RepID=TRUB_XANC5 Length = 308 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 129/308 (41%), Positives = 178/308 (57%), Gaps = 11/308 (3%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +PR R ++G+LLLDKP G+SSN+ALQ +R+ A + GHTG+LDPLATG+LP+C GEA Sbjct: 2 KPRIVYRPLHGILLLDKPAGLSSNNALQAARRLLRAEKGGHTGSLDPLATGLLPLCFGEA 61 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQ 121 TK + LL S K Y LG TDT DADGQ + ER V S L AAL F G I+Q Sbjct: 62 TKIAGLLLGSAKAYDAEIVLGVTTDTDDADGQPLRERAVPDLSEADLQAALAPFIGRIQQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 +YSALK G+ LY AR+G + R + V + + + L L + C GTYIR Sbjct: 122 QAPIYSALKQGGEPLYAKARRGERIEAPVREVDVQAIDVLGYSAPGLRLRVTCGSGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 ++ DLGE LGCGAH+ LRRL V + +M+TLE L +E LL Sbjct: 182 SLARDLGEVLGCGAHIASLRRLWVEPFRAPQMITLEALSAALEAG--------TEARTLL 233 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 +P+++ + + + L T + F+ G +R + P G V V G +G G+G +D +G Sbjct: 234 LPIEAGLAGFARIVLDQTHAARFRMGQRLRDAAFPP-GQVAVF-GPDGTPSGLGLVDADG 291 Query: 302 RVAPRRLV 309 R++P+RL Sbjct: 292 RLSPQRLF 299 >UniRef50_A3VQI2 TRNA pseudouridine synthase B n=2 Tax=Alphaproteobacteria RepID=A3VQI2_9PROT Length = 320 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 97/321 (30%), Positives = 158/321 (49%), Gaps = 11/321 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RRRG+ ++G L+LDK S +A+ K++ +++A +AGH G LDPLATG+LP+ G Sbjct: 1 MAR-RRRGQPLHGWLVLDKAYDYGSTEAVSKLRWLFDAQKAGHAGTLDPLATGVLPVAFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK Y+ D K YR A+ G+ T D +G+++ ++ A L F G+IE Sbjct: 60 EATKTVPYIQDGKKTYRFTAKWGEARSTDDREGEVIATSAHRPERSEIEARLCDFEGNIE 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGTY 179 QIP +SA+K G++ Y+ AR+G+ V +R + + L + +E E KGTY Sbjct: 120 QIPPAFSAVKIDGERAYDLAREGVAVTPPSRMVCIDRLSLLDCPSEDEAVFEAVTGKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR ++ DL + LG HV LRR AV + E VT+E L Sbjct: 180 IRALVRDLAKALGTVGHVAALRRTAVGPFSEEMAVTMEELTGRPSTDRLTVDDRPAEPAQ 239 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVR--------VTEGENGKF 291 L+P+++ +++ + + NG + + GL V E K Sbjct: 240 FLLPVEAALAEHLSATVDRAQAARLLNGGDAILAAPSMTGLRAGRAGDIEPVMAMEGDKP 299 Query: 292 IGMGEIDDEGRVAPRRLVVEY 312 + + ++ ++ P ++ Sbjct: 300 VAICRLEGM-KLRPVKVFAFR 319 >UniRef50_A0LE16 tRNA pseudouridine synthase B n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LE16_MAGSM Length = 319 Score = 300 bits (768), Expect = 5e-80, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 169/316 (53%), Gaps = 17/316 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R RR+G I+G L + K G+SS+ +++V R AN+AGH G LDP + G+LPI LG Sbjct: 1 MGRRRRKGVVIHGWLAIHKEPGLSSSQVVERVIRTTKANKAGHGGTLDPFSEGVLPIALG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK S +L+ DK YR + GQ TD+ D G ++EE+ S +L A L F G+IE Sbjct: 61 EATKTSGMVLNGDKSYRCWLKFGQETDSGDLTGVLLEEQGRVPSEAELRAVLPQFMGEIE 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+P ++SAL+ G++ Y+ AR+G EV +R + + L + E + L++ C KGTYI Sbjct: 121 QVPPVFSALRVDGERAYKRARRGEEVQLASRRVRIDRLELVGFEADTAVLDVACGKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R++ D+ L AH++ L R + + VTLE LRE + L + Sbjct: 181 RSLGVDIARALHSRAHLVRLLRTGTMGFGLNDAVTLEQLREACSEGR---------LQEI 231 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTEGENGKFIGMGEIDD 299 L P+D D P + + + + G V A G+VR+ + +G+F +GEI Sbjct: 232 LYPVDRVLDDIPALRMTGNAWYRLRQGQEVEVEDAATPAGMVRLQD-PDGQFGLLGEISA 290 Query: 300 EG------RVAPRRLV 309 + R+ P RL Sbjct: 291 QADLQGLRRIKPTRLF 306 >UniRef50_A5D2S3 tRNA pseudouridine synthase B n=3 Tax=Peptococcaceae RepID=TRUB_PELTS Length = 316 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 107/320 (33%), Positives = 170/320 (53%), Gaps = 30/320 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + KP GMSS+D + +++RI+ +AGHTG LDP A G+L +CLG AT+ +++LL Sbjct: 1 MNGIVNVLKPPGMSSHDVVDRIRRIFGVKKAGHTGTLDPGAAGVLVVCLGVATRLARFLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE-QLAAALDTFRGDIEQIPSMYSAL 129 DK YRV G T T D+ G+I ++R +F E + L F G++ Q+P M SA+ Sbjct: 61 GEDKEYRVEITFGMSTSTGDSYGEITDQRDASFLKEHDIIRVLPEFTGEVRQVPPMTSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG-----NELELEIHCSKGTYIRTII 184 K++GKKLYE AR+G+ V R+ R + + L FIR G + + CSKGTY+R++ Sbjct: 121 KWRGKKLYELAREGLVVERQERAVYIKSLEFIRGSGWGTPSPRALMHLSCSKGTYVRSLC 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+G +LGCGAH+ +L R + + VTLE L+ + +L+ ++ M Sbjct: 181 HDMGSRLGCGAHMSFLVRTRAGPFKIADSVTLEELQAAASKG---------VLERKIIEM 231 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSG-------APLEGLVRVTEGENGKFIGMGEI 297 D S+YP V + ++ G+ + G LVR+T + + + E Sbjct: 232 DRAVSEYPEVIVKSSAVKAVAAGSKLYIPGVARMPLDLDCGKLVRLTGPDG--LLAIAEA 289 Query: 298 DDEG------RVAPRRLVVE 311 E P ++ Sbjct: 290 GREPFDKEKLFFKPVCVLAR 309 >UniRef50_A2RE90 tRNA pseudouridine synthase B n=24 Tax=Streptococcus RepID=TRUB_STRPG Length = 294 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 155/308 (50%), Gaps = 23/308 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ L K GM+S+DA+ K++++ + GH G LDP G+LPI +G+AT+ +Y+ Sbjct: 2 INGIINLKKEAGMTSHDAVFKLRKLLQEKKIGHGGTLDPDVVGVLPIAVGKATRMIEYMT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 ++ K Y LG T T DA G++V + + E + + TF G I Q P MYSA Sbjct: 62 EAGKVYEGQVTLGYSTTTEDASGEVVARSSLPAVLTEELVDQTMTTFLGKITQTPPMYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELL------FIRHEGNELELEIHCSKGTYIRT 182 +K G+KLYEYAR G V R R +T+ F ++ CSKGTY+RT Sbjct: 122 VKVNGRKLYEYARAGESVERPRREVTISLFERTSPLNFTEDGLCRFSFKVACSKGTYVRT 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + DLG LG +H+ +L+R A + +E TL + ++V + E L+ Sbjct: 182 LAVDLGRALGVESHMSFLQRSASAGLTLETAYTLGEIADMVSKQEMS----------FLL 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 P++ +D P + + T G + E L+ GE K I + E D+ Sbjct: 232 PIEYGVADLPKMVIDDTELTEISFGRRLSLP--SQEPLLAAFHGE--KVIAILEKRDQ-E 286 Query: 303 VAPRRLVV 310 P+++++ Sbjct: 287 YKPKKVLI 294 >UniRef50_C6P7U8 tRNA pseudouridine synthase B n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P7U8_CLOTS Length = 289 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 157/302 (51%), Gaps = 19/302 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP GM+S+D + +++ +N + GH G LDP A G+LPIC+G+ATK SQY++ Sbjct: 1 MDGFLNVLKPPGMTSHDVVSFLRKKFNIKKIGHLGTLDPGAAGVLPICIGKATKLSQYVV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR G TD+ D G I PV + +++ L F+GDI Q+P +YSA Sbjct: 61 SQSKTYRAEITFGFSTDSIDKFGNITNATPVKIFTIDRIQEVLTKFKGDILQVPPIYSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-ELELEIHCSKGTYIRTIIDDLG 188 K GKKLYEYAR+G + +A PI +Y++ + ++ + +I CSKGTYIR ++ D+ Sbjct: 121 KINGKKLYEYAREGKSIEIKASPICIYDIKLVSYDIPYRIMFDIKCSKGTYIRALVRDVC 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +KL ++ L R++V + +E TLE ++ + ++P Sbjct: 181 DKLNIAGYMSMLIRISVGPFSLENSYTLEDIKTDKYNMIEMSN---------VLP----- 226 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 +P V L +G P+ + + + FIG+G++D RL Sbjct: 227 --FPDVYLNNFDYKKIIHGRPIENNYLDVNSNFVKLYNPDNLFIGIGKVDSSKIYV-ERL 283 Query: 309 VV 310 +V Sbjct: 284 LV 285 >UniRef50_A5GF89 tRNA pseudouridine synthase B n=7 Tax=Geobacter RepID=TRUB_GEOUR Length = 310 Score = 299 bits (766), Expect = 9e-80, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 152/306 (49%), Gaps = 20/306 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G +++DK GM+S+D + V+RI + GHTG LDP ATG+LP+ LGEATK +L Sbjct: 1 MDGFIVVDKSAGMTSHDVVSAVRRIAGQKKVGHTGTLDPFATGVLPVALGEATKAIPFLD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +S K YR + +LG TDT D G+++ E + L F G + Q+P M+SAL Sbjct: 61 ESIKEYRAVMKLGVATDTQDYTGKVLHESDWSHVTTSALNEICRMFVGKLSQVPPMFSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G LY+ ARQG EVPR+ R I +Y L+ E+ + CS+GTY+RT+ +D+G Sbjct: 121 KQNGVPLYKLARQGAEVPRQPREIEIYSLVIEAVNLPEVAFTVRCSRGTYVRTLANDIGG 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCGAH++ L R + + +TL+ ++ + L+ + S Sbjct: 181 KLGCGAHLLQLHRSLSGPFSINNAITLDDWARRMQDGRAGET---------LVSPFAALS 231 Query: 250 DYPVVNLPLTSSVYFKNG--------NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 L + NG + + LVR++ G G + + + G Sbjct: 232 HLKDFILTGKGAAKVANGVVPALEDFQVLSECELLRDELVRMSFG--GTLLAVAKAGLPG 289 Query: 302 RVAPRR 307 + Sbjct: 290 DWKMLK 295 >UniRef50_B8FCY8 tRNA pseudouridine synthase B n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCY8_DESAA Length = 340 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 99/313 (31%), Positives = 153/313 (48%), Gaps = 21/313 (6%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 +G +G++++DKP G++S AL KVK+ +AGHTG LDP ATG+L CLG Sbjct: 3 GMQLEKGAVNHGIIVVDKPSGITSAKALDKVKKTLGVKKAGHTGTLDPFATGVLVCCLGA 62 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI---VEERPVTFSAEQLAAALDTFRGD 118 AT+ +++ L DK Y + LG TDT D G++ +E + +Q+ A F+G+ Sbjct: 63 ATRLARFFLHGDKTYEAVMHLGIETDTQDLTGEVASRMEAEAAQVTPQQIREAAARFQGE 122 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 I+Q P +YSALK+QG LY++AR+G V ++AR IT+Y L CS G Sbjct: 123 IDQFPPVYSALKHQGVPLYKWARKGTPVQKDARRITIYSLDVTDINPPMAGFTARCSGGA 182 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIRT+ D+G +LGCGAH+ LRR S + +E VTL+ L +LV+ + ++ Sbjct: 183 YIRTLCADIGRELGCGAHLHALRRTENSGFSIEEAVTLDQLEDLVQSGK---------IN 233 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVR---------TSGAPLEGLVRVTEGENG 289 + PM P ++ +G + + G Sbjct: 234 EHVAPMAHALRQMPEYTASSQTAKKITHGAALTWLDLGEKTGRQDLQDNPKHIKVASQEG 293 Query: 290 KFIGMGEIDDEGR 302 + + +G Sbjct: 294 DLLAVLTPKTDGI 306 >UniRef50_B8CW75 tRNA pseudouridine 55 synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW75_HALOH Length = 303 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 165/299 (55%), Gaps = 22/299 (7%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 ++G++ + KP GM+S D + ++++Y+ +AGHTG LDP A+G+LP+CLG+ TK Y Sbjct: 2 SRVDGIISIIKPPGMTSFDVVAWIRKMYSVKKAGHTGTLDPAASGVLPVCLGKGTKIIPY 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMY 126 L D K Y LG +TDT D++GQI+EE + + L + F+G IEQ+P MY Sbjct: 62 LPDEVKGYVAEITLGVKTDTLDSEGQIIEENQKWESITDSHLNKVISDFQGVIEQVPPMY 121 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SA+KY+GK+LYE AR+G ++ RE R + + ++ + + +++L + CS GTYIR+I D Sbjct: 122 SAVKYKGKRLYELAREGKKIKREPRQVEIKKINILDIDLPKVKLFVLCSPGTYIRSIARD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +GEKLGCGA++ +L R + +E TL ++ D LL D Sbjct: 182 IGEKLGCGAYLSFLVRTRSGSFNLENSFTLSEIK--------------FRGDKLLYNFDY 227 Query: 247 PAS-DYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLV----RVTEGENGKFIGMGEIDD 299 P + + +++ S NG P+ S G V +V N F+ + + D Sbjct: 228 PLTNHFTRIDIRRGSRQKVYNGAPLYGSDIAKIYGKVTLRDKVLIYNNNTFLAIYRVSD 286 >UniRef50_D0LZ86 tRNA pseudouridine synthase B n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZ86_HALO1 Length = 371 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 109/304 (35%), Positives = 155/304 (50%), Gaps = 25/304 (8%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++GVL++DKP G++S + +VKR R GHTG LDP+ATG+LP+CLGEATK + Sbjct: 28 NKSALHGVLVVDKPAGITSAAVVARVKRHLGVRRVGHTGTLDPMATGVLPLCLGEATKIA 87 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ---LAAALDTFRGDIEQIP 123 YLL DK Y LG TDT DA+GQ+ P +A L L TF G EQ+P Sbjct: 88 GYLLAEDKGYEAELLLGVETDTLDAEGQVTARAPEAAAAVDEAALRRVLATFVGPGEQVP 147 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 M+SALK GK+L+E AR G EV R RP+ ++ELL +HCSKGTY+R++ Sbjct: 148 PMFSALKRGGKRLHELARAGQEVERPPRPVVIHELLLHAFATPRARFSVHCSKGTYVRSL 207 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DD+G LGCGAH+ LRR + + + + L + + E+A L+ Sbjct: 208 ADDIGRALGCGAHLSALRRTRSGAFAIAQAIPLAAIEDDPERAR-----------AALVS 256 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPV----------RTSGAPLEGLVRVTEGENGKFIG 293 + P V +P G P+ + + VR+ +G+ + Sbjct: 257 PAVAVAHLPAVAIPSEGVHDIACGKPMSWQRLSLLAPEAAAIACDAPVRLLL-PSGELVA 315 Query: 294 MGEI 297 + E Sbjct: 316 LAER 319 >UniRef50_B2A3A0 tRNA pseudouridine synthase B n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3A0_NATTJ Length = 299 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 166/310 (53%), Gaps = 21/310 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L + K G +S+D +Q +++ Y + GH G LDP A G+LP+ LG+AT+FSQY+L Sbjct: 1 MLGFLTVCKTPGYTSHDVVQYLRKNYQVKKVGHLGTLDPGAVGVLPLALGKATRFSQYIL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA-EQLAAALDTFRGDIEQIPSMYSAL 129 DK+YR LG+ TDT DA G+ +E+ V + E L G+I Q+P MYSA+ Sbjct: 61 SQDKKYRFELTLGEATDTLDAQGKTIEKDEVQNTHIENLKNKYQELIGNINQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIID 185 K +GKKLYE AR+G EV R R +T++ L + + ++HCSKGTYIRT+ + Sbjct: 121 KQKGKKLYELAREGKEVERTPRQVTIHSLNLVDIYEHQGKHRFLFDVHCSKGTYIRTLAE 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DL + G ++ +L R A + ++ + + L L L P+D Sbjct: 181 DLAKLSGTVGYMSFLIRTATGIFNLDDAIFPQEL-----------PEQKTDLGIHLFPVD 229 Query: 246 SPASDYPVVNLPLT-SSVYFKNGNPVRTSGAPLEG-LVRVTEGE---NGKFIGMGEIDDE 300 P SD P + L + FKNGN V T+ G L R+ E + + F+G+G+I Sbjct: 230 YPLSDIPSLVLKESQQLKRFKNGNFVNTAVIAESGELYRIYEEDSSGDNLFLGLGKITSS 289 Query: 301 GRVAPRRLVV 310 + P +++ Sbjct: 290 NTLKPEKIIA 299 >UniRef50_B0THR7 tRNA pseudouridine synthase B n=2 Tax=Heliobacteriaceae RepID=TRUB_HELMI Length = 306 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 102/312 (32%), Positives = 159/312 (50%), Gaps = 20/312 (6%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++ G L L KP GM+S+D + K +R+ R GH G LDP A G+LPI +G+AT+ Sbjct: 2 EPLELEGFLNLLKPPGMTSHDVVAKARRLLKEKRIGHLGTLDPDAAGVLPIAIGQATRLI 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSM 125 + + DK YR RLG TD+ DA G+IV+ V S + L FRG I Q P M Sbjct: 62 ELVAGVDKAYRTQLRLGAVTDSQDASGRIVKTGAVPALSRDDWEETLRPFRGQILQTPPM 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE---GNELELEIHCSKGTYIRT 182 SA+ GK+LYEYARQGIEV R ARP+++ + + ++ E+ +++ CS GTYIRT Sbjct: 122 VSAVSVGGKRLYEYARQGIEVERSARPVSISRIEIVHYDPATPEEIVIDVECSAGTYIRT 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+G++LGCG H+ +L R + + +TLE L E + + ++ Sbjct: 182 LCHDIGQRLGCGGHMGWLIRTRSGLFSLRDSLTLESLAEGPPK------------EQIVT 229 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNG--NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 P ++ + P + + G ++ G +R+ + +G DE Sbjct: 230 PFEA-LAHLPALEIGENRLAALSRGLAQYLQGDGWSEGQWIRMHRRQKLLAVGQAIRKDE 288 Query: 301 GRVA-PRRLVVE 311 + PR++ Sbjct: 289 QWLCQPRKVFTR 300 >UniRef50_D2RKW1 tRNA pseudouridine synthase B n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKW1_ACIFE Length = 297 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 17/300 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ + KP GM+S+D + +++I + + GH G LDPLA G+LP+ G AT+F +Y Sbjct: 1 MDGIFNVLKPPGMTSHDVVGALRKILHMKKIGHGGTLDPLAAGVLPVFTGMATRFLEYAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +K YR G +TDT D +G ++ E PV +AE++ AAL +FRG+ QIP MYSA+ Sbjct: 61 HEEKSYRAELTFGFQTDTGDTEGAVIAESPVRDLTAEEIEAALASFRGEGTQIPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G KLY+ ARQGIEV RE RPIT+YEL + + G L ++ CSKGT+IRT+ +DL Sbjct: 121 SVGGTKLYKLARQGIEVKREPRPITLYELEKVDYTGKTLVFDVTCSKGTFIRTLCEDLAA 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG + +L R + +E TL+ + E M ++ + Sbjct: 181 KLGMKGTMSFLLRRRAGVFRLEDAHTLQEIAADPEG--------------CCMGVEPILA 226 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 +P + G G L ++ +G +G+ D GR+ +++ Sbjct: 227 GFPKKIVNALQGRRIAQGVATTLPGLTEGTLYQLWT-RDGVLVGLARAVD-GRLRAHKII 284 >UniRef50_A4J5W9 tRNA pseudouridine synthase B n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5W9_DESRM Length = 310 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 98/320 (30%), Positives = 172/320 (53%), Gaps = 31/320 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+ + KP GM+S+D + V+R+ + GHTG LDP A+G+LP+C+G+AT+ ++++ Sbjct: 1 MDGVINILKPPGMTSHDVVFFVRRVTGVKKCGHTGTLDPGASGVLPVCVGKATRLARFVT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 D DK YR LG T + DA G ++ + + ++ L F+G+I+Q P M SA+ Sbjct: 61 DGDKTYRAEITLGIETSSQDAFGNVISRIDASAIKLDDFSSELRKFQGEIKQTPPMASAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE-----GNELELEIHCSKGTYIRTII 184 K +GKKLYE R+GI V R +T+Y++ + + ++ CSKGTY+RT+ Sbjct: 121 KVKGKKLYELEREGIIVDVPTRTVTIYQVNIVDSWDWGTPNPRVLFDVACSKGTYVRTLC 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+G++LGCGA++ +L R V+ + + TLE + L ++ L+ ++PM Sbjct: 181 SDIGKELGCGAYMSFLLRSRVAAFGLHNAYTLEEIAALADK---------SQLESAVIPM 231 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSG-------APLEGLVRVTEGENGKFIGMGE- 296 P+V + ++ +G + +G EGLV+V N + +G+ + Sbjct: 232 AKAVQHLPIVEIHPSAQKSVCSGATLYPAGVRVGLEYLKPEGLVQVQL--NHELLGIYKP 289 Query: 297 ---IDDEG---RVAPRRLVV 310 ++D G + P + Sbjct: 290 VLDVNDFGERIILRPEVVFA 309 >UniRef50_C9R8X3 tRNA pseudouridine synthase B n=1 Tax=Ammonifex degensii KC4 RepID=C9R8X3_AMMDK Length = 303 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 92/275 (33%), Positives = 147/275 (53%), Gaps = 14/275 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + GVL + KP GM+S+D + ++R+ + GH G LDP A G++ + +G+AT+ +Q+L+ Sbjct: 1 MIGVLNVLKPPGMTSHDVVDWLRRLTGEKKVGHAGTLDPDACGVMVLLIGKATRAAQFLV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK YR A G RTDT D G+++ + + + E +A L F G I Q P M+SA+ Sbjct: 61 TEDKEYRAEAVFGVRTDTLDLSGRVLACQDASWLTPEAVAEVLPQFTGSIWQKPPMFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG----NELELEIHCSKGTYIRTIID 185 +Y+GK+L+E AR G EV R + VY L ++ + + L +HC KGTY+R+++ Sbjct: 121 RYKGKRLHELARAGQEVEVPPRRVEVYSLQLLKGDWGKRHPRVWLHVHCGKGTYVRSLVA 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DLGE LG GA + +L R V ++ + TLE L L E+ + L L+P+ Sbjct: 181 DLGEALGTGACLGFLLRTRVGRFGIGEAYTLEELARLKEEGK---------LAKALIPLA 231 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 P + + + KNG + + Sbjct: 232 EALGHLPAIEVGEEGAKRIKNGGFLSPAHCLAGKW 266 >UniRef50_Q67P83 tRNA pseudouridine synthase B n=3 Tax=Bacteria RepID=TRUB_SYMTH Length = 299 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 152/315 (48%), Gaps = 23/315 (7%) Query: 1 MSR-PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R +++GVL L KP GM+S+D + V+R +AGHTG LDP G+LP+C+ Sbjct: 1 MARAQNEAASEVDGVLNLLKPPGMTSHDVVAFVRRALGVKKAGHTGTLDPGVAGVLPVCV 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGD 118 G AT+ ++Y+ SDK YR G TDT D G++V E + +A AL F G Sbjct: 61 GRATRLAEYIAGSDKAYRAEITFGVATDTQDGFGEVVAEADASHLTRGDVAYALTRFHGP 120 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---NELELEIHCS 175 IEQ+P M SA+K GK+LYE AR+G+EV RE R + ++ L + +++ CS Sbjct: 121 IEQVPPMVSAVKVGGKRLYELARKGVEVEREPRRVFIHRLQLLDFRPGPRPVAYIDVVCS 180 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 KGTY+RT+ DLG L GAH+ YL R + + + TLE L Sbjct: 181 KGTYVRTLAHDLGRFLQVGAHLSYLVRTRSGPFVLAQAATLEELAA-------------- 226 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG-LVRVTEGENGKFIGM 294 L+P + D P V + ++ +G +G V V Sbjct: 227 -GKARLLPPAAALGDMPRVTVSGRAAARVLHGVAPAVRVEHPDGTTVAVVAANGALLA-- 283 Query: 295 GEIDDEGRVAPRRLV 309 D G + R++ Sbjct: 284 LAEADGGGLRLRKVF 298 >UniRef50_D1VSB0 tRNA pseudouridine synthase B n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB0_9FIRM Length = 293 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 97/294 (32%), Positives = 166/294 (56%), Gaps = 14/294 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+LL++K +G++S+D + V++ N + GH G LDP+ATG+L I +G+ATK S Y++ Sbjct: 1 MDGILLINKKKGITSHDVISIVRKKLNIKKVGHCGTLDPMATGLLIILIGKATKLSDYIM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y +LG TD+ D G I+E + T ++L L +F G+++QIP MYSA+K Sbjct: 61 KNRKTYLAKVKLGLLTDSYDITGNILENQDFTVDKDKLIEVLKSFVGEVKQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG-NELELEIHCSKGTYIRTIIDDLGE 189 GKKLYEYAR+G+EV R+ R + +Y + + G +E + S GTYIRT+ D+G Sbjct: 121 VNGKKLYEYARKGVEVKRKERLVKIYSMELLDFNGKDEFVINCDVSSGTYIRTLAFDIGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL ++ L+R ++S + + + ++ + + E L+ ++PM+ Sbjct: 181 KLNTYGTLLELQRNSISNFNLNECLNIDDIESI----------DLEELNNRIIPMEKALL 230 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID-DEGR 302 ++ + P NG +T + + R+ + KFIG+G ++ D GR Sbjct: 231 NFEKFSYPSDFYDKLLNGIKFQTEKDFEDKIFRLYCRD--KFIGLGRMEVDNGR 282 >UniRef50_A4A2R8 TRNA pseudouridine synthase B (Fragment) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2R8_9PLAN Length = 280 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 95/294 (32%), Positives = 145/294 (49%), Gaps = 15/294 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L + KP G +S DA+ +V R + GH G LDPLATG+L C+G T+ +YL Sbjct: 1 MHGILNIHKPPGWTSRDAVNRVNRFVRPAKVGHAGTLDPLATGVLICCVGSGTRLIEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 KRY LG+ +DT D +G + E SA QL A L F G+I Q PS +SA+ Sbjct: 61 QMPKRYVGQFELGKTSDTEDLEGVVTEIVDAPEISAAQLTAILPEFVGEILQRPSTFSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GK+ Y+ ARQG V RPIT+YE+ E E+++ C GTY+R + D+GE Sbjct: 121 KVDGKRAYKLARQGAAVELAPRPITIYEITLRGFEYPRFEIDVLCGGGTYMRALGRDIGE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LG GA + L+R A+ + +E + L+ L E + L P+ + S Sbjct: 181 RLGSGAVMTGLQRTAIGDFRLEDAIPLDELSA-------------ESVAENLSPLSTAVS 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 P + L +R + + + + G+ I + ++ R Sbjct: 228 QAPQITLTPEEVNEMIYARGIRATMESPAAEIAAMD-QQGRLIAILTRREDQRW 280 >UniRef50_C6LME9 tRNA pseudouridine synthase B n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LME9_9FIRM Length = 332 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 106/340 (31%), Positives = 162/340 (47%), Gaps = 51/340 (15%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ + K +G +S+D + K++ I + + GHTG LDP A G+LP+CLG AT+ L Sbjct: 2 INGIVNVYKEKGFTSHDVVAKLRGILHQKKIGHTGTLDPEAEGVLPVCLGNATRLCDMLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK YR + LGQ TDT D G ++ S E + +A+ F G EQ+P MYSALK Sbjct: 62 DKDKTYRAVLLLGQTTDTQDTTGTVLSTCAEIPSEEAVRSAVTGFIGPYEQVPPMYSALK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYE AR+G V R+AR + +Y + + + + + CSKGTYIRT+ D+GE+ Sbjct: 122 VGGKKLYELAREGKTVERQARTVQIYGITIEDIQLPRVTMTVSCSKGTYIRTLCHDIGER 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCG + L R V + + + L + +L L+ ++P+++ + Sbjct: 182 LGCGGCMEALLRTRVGAFVLADSLRLSEIEKLQSDGN---------LENSIVPVEAMFAQ 232 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSG------------------------------------ 274 YP + + NGNP+ Sbjct: 233 YPALRTKAAADRLLYNGNPLEAQNLQKAPEENASDALSKAALTKAAGAVRRTAEEKCTPE 292 Query: 275 ----APLEGLVRVTEGENGKFIGMGEIDDEG-RVAPRRLV 309 P E VR+++ G+F G+ E R P ++ Sbjct: 293 SGGTLPPEEWVRISDS-AGRFCGIYRYVPEKRRYQPVKMF 331 >UniRef50_UPI00016C5566 TruB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5566 Length = 286 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 155/299 (51%), Gaps = 18/299 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPICLGEATKFSQYL 69 +NG+L++DKP GM+S DA+ +V+R + + GHTG LDPLATG+L +C+G AT+ + Y+ Sbjct: 1 MNGLLVIDKPGGMTSRDAVNRVQRWFPKKTKIGHTGTLDPLATGVLVVCVGAATRLADYV 60 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y RLG + + DADG + + V + E + A+L F G IEQ+P SA Sbjct: 61 QAMGKTYASRFRLGATSTSDDADGTVTDTPGAVPPTGEAVEASLQRFVGVIEQLPPAVSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK G++ ++ RQG EV RP+ + + ++ ++E+ C KGTYIR+I DLG Sbjct: 121 LKVDGRRAHDLVRQGKEVTLAPRPVRIDAVRLTGYDWPFADVEVDCGKGTYIRSIARDLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCG V LRR V Y E VTL+ + LMPM S Sbjct: 181 AALGCGGMVQTLRRARVGCYLAEDAVTLD--------------LDPGEVGKHLMPMSSAL 226 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSG--APLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 S P V + F+ G V T+G +P G V + IG+G + G V P Sbjct: 227 STLPAVRISAEVVTRFRQGQTVATAGEASPQPGEEVVVIDGFQEVIGIGAVLPNGFVKP 285 >UniRef50_O66922 tRNA pseudouridine synthase B n=2 Tax=Aquificaceae RepID=TRUB_AQUAE Length = 287 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 170/302 (56%), Gaps = 17/302 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G LL+DKP+G++S + +++VK A +AGHTG LDP+ATG+L I + +AT+FSQ+ + Sbjct: 1 MDGALLIDKPKGITSTEVVERVKEKLKARKAGHTGTLDPIATGLLIILINKATRFSQFFI 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K YR + G TDT DA G++VE + ++L L+ FRG+I Q P +SA K Sbjct: 61 GMPKTYRFTVKFGAETDTYDAQGKVVETYEGELNCDKLKEVLNEFRGEILQTPPPFSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN--ELELEIHCSKGTYIRTIIDDLG 188 +G++ YE AR+G +V + ITVY L + E E S G Y+R++ D+G Sbjct: 121 IKGRRAYELARKGKKVELKPVKITVYSLELLSCNPREKEAEFLAEISSGGYVRSLAYDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +KLG G ++ LRRL + + VE V+LE ++E + ++P+D+ Sbjct: 181 KKLGIGGYMKELRRLKIDEISVEEAVSLEEF------------LSSENPEEYVLPVDTLF 228 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 P V L + G + EGLV++ E+ KFIG+GE+ G ++P+RL Sbjct: 229 RVIPEVRLNTFEAGKILQGKRILIKNYDYEGLVKIY--EDSKFIGIGELKG-GVLSPKRL 285 Query: 309 VV 310 +V Sbjct: 286 LV 287 >UniRef50_A5IIS7 tRNA pseudouridine synthase B n=9 Tax=Thermotogaceae RepID=TRUB_THEP1 Length = 309 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 86/295 (29%), Positives = 153/295 (51%), Gaps = 20/295 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L+ KP+G +S+D + +V++ + GH G LDP A G+L I + + T+ ++ D Sbjct: 3 HGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y V RLG T+T D G++VEER + E++ A+ +F G+ +Q+P YSA K+ Sbjct: 63 LKKVYWVKMRLGLITETFDITGEVVEERECNATEEEIREAIFSFVGEYDQVPPAYSAKKH 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 +G++LY+ AR+G + + + ++++ + EG ++ S GTYIR++ D+G KL Sbjct: 123 KGERLYKLAREGKIINLPPKRVKIFKIWDVNVEGRDVSFRAEVSPGTYIRSLCMDIGYKL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GCGA + L R +V Y +E + + A E ++ ++P++ Sbjct: 183 GCGATAVELVRESVGSYTIEESLNVFE-------------AAPEEIENRIIPLEKCLEWL 229 Query: 252 PVVNLPLTSSVYFKNGNPVRT------SGAPLEGLVRVTEGENGKFIGMGEIDDE 300 P V + S+ NG+ + G +VRV E G+ + + E + Sbjct: 230 PRVVVHQESTKTILNGSQIHLEMLKEWDGFKKGEVVRVF-NEEGRLLALAEAERN 283 >UniRef50_A6GNL1 tRNA pseudouridine synthase B n=2 Tax=Burkholderiaceae RepID=A6GNL1_9BURK Length = 344 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 124/339 (36%), Positives = 188/339 (55%), Gaps = 36/339 (10%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 + +++ R ++GVLL DK G SSN ALQ VKR+Y A + GHTG LDPLA+G+LP+ GE Sbjct: 7 AETKKQKRALSGVLLFDKSTGFSSNQALQIVKRLYRAEKTGHTGTLDPLASGLLPLMFGE 66 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVE---ERPVTFSAEQLAAALDTFRGD 118 ATKF+ L+D+ K YR RLG ++T DA+G++ + + + +++ + F G+ Sbjct: 67 ATKFAADLIDASKTYRTKVRLGFSSNTGDAEGELTKVGNRALESITEDEVKQVCEQFVGE 126 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--------NELEL 170 I+Q+P M+SALK GK LYEYAR+GIE+ R AR + +++L I+ E +EL Sbjct: 127 IQQVPPMFSALKKDGKPLYEYAREGIELDRPARTLLIHQLDVIKVEHNTNHGESSCTIEL 186 Query: 171 EIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD 230 E++CSKGTY+RT+ +D+ + LG ++ LRR A+ VER TLE L+ L E Sbjct: 187 EVNCSKGTYVRTLGEDIAKALGTAGYLTELRRTAIGDLKVERAYTLEALKVLGESE---- 242 Query: 231 IPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS-GAPLEGLVRVT----- 284 + LD +L P+D+ V L + F +G + G VRV Sbjct: 243 -TPFDALDAVLFPVDALLGSLGKVELNNEFARRFSHGQRLPLELADAKPGRVRVYGEAPA 301 Query: 285 -----------EGENGKFIGMGEIDDEGR---VAPRRLV 309 N +F+G G ++ +G+ + P RL+ Sbjct: 302 QDVNTEVSNTAFKGNSRFMGTGILETDGKGALLRPDRLI 340 >UniRef50_Q38W87 tRNA pseudouridine synthase B n=3 Tax=Lactobacillaceae RepID=TRUB_LACSS Length = 305 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 100/311 (32%), Positives = 146/311 (46%), Gaps = 19/311 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ L K +GM+SND + KV+RI + + GH+G LDP G+LPIC+G+ATK L+ Sbjct: 1 MDGIIPLYKERGMTSNDCVFKVRRILHMKKVGHSGTLDPNVDGVLPICIGQATKVVDQLV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 S K Y LG T T D DG++VEE+ S E++ L +F G+ QIP M+SA Sbjct: 61 HSGKVYTGEITLGLSTTTEDLDGEVVEEQQLTEPISTEKIKETLASFLGESIQIPPMFSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLF-------IRHEGNELELEIHCSKGTYIR 181 +K G++LY+YAR G V R R IT+ + + CSKGTYIR Sbjct: 121 VKVNGRRLYDYARAGDPVERPQRKITITQFDLQGEPEFDAKTGRQTFRFIAGCSKGTYIR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D G KLG A + L RL + VTL L E + + L +L Sbjct: 181 TLAVDFGRKLGLPAVMSDLTRLKSGGIQIGSCVTLAQLAEAADNGQ---------LADIL 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 +P+D + + L NG + E L EG + Sbjct: 232 IPLDHVFEENVKIALDDDQWAKILNGVFLTFPEQTEEILALTYEGHIKALYQVANAKQH- 290 Query: 302 RVAPRRLVVEY 312 P ++ ++ Sbjct: 291 LYRPYKMYLQN 301 >UniRef50_Q2KXZ0 tRNA pseudouridine synthase B n=2 Tax=Proteobacteria RepID=TRUB_BORA1 Length = 244 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 112/242 (46%), Positives = 152/242 (62%), Gaps = 5/242 (2%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +RRG+ ++GVLLLDKP G+SSN ALQ+ KR +A +AGHTG LDP ATG+L C+G ATK Sbjct: 3 KRRGQPLDGVLLLDKPVGLSSNHALQRAKRTLDAAKAGHTGTLDPFATGLLLCCMGRATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQ 121 S +L++DK YR + G+ TD+ D G IV P L L F+G IEQ Sbjct: 63 ISGAMLNADKTYRATLQFGEETDSGDLTGNIVARAPEDFPGVEEANLREVLSRFQGSIEQ 122 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 IP MYSALK GK LYEYAR GIE+ R R + +Y + + G++ E+++ CSKGTYIR Sbjct: 123 IPPMYSALKRDGKPLYEYARAGIELERPPRRVMIYRIELLSFTGHQAEIDVACSKGTYIR 182 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G LGC AH+ LRR V + ++R VTL+ L+ + + + + A L L Sbjct: 183 TLAQDIGRALGCYAHLFALRRTQVGPFSLDRAVTLDALQAMTD--PKAALLALNELPAGL 240 Query: 242 MP 243 +P Sbjct: 241 LP 242 >UniRef50_C0QUQ5 tRNA pseudouridine synthase B n=5 Tax=Aquificales RepID=C0QUQ5_PERMH Length = 293 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 94/305 (30%), Positives = 171/305 (56%), Gaps = 17/305 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYN-----ANRAGHTGALDPLATGMLPICLGEATKF 65 ++G+LL+DKP+ ++SN +QK+K+ + + GHTG LD A+G++ I +G+AT+ Sbjct: 1 MDGILLVDKPENITSNHLVQKIKKHFKQITGKEIKVGHTGTLDYFASGLMVITVGKATRL 60 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 ++Y DK Y LG+ TDT D G+++EE+ +QL + +F+ Q P Sbjct: 61 TEYFQGLDKEYIATGELGKITDTYDRQGRVIEEKECKIDEDQLKDIILSFKKRYLQTPPP 120 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YS+ + +GK+ Y+ A++GI+V + + +T+Y + ++ E +++HCS GTYIR+++ Sbjct: 121 YSSKRIEGKRAYQLAKKGIQVKLKPKEVTIYSIQILKIEMPFFTIKVHCSSGTYIRSLVK 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 ++G+K GCGA+V LRR V + VE + LE L + EQ ++ L+ + Sbjct: 181 EIGDKAGCGAYVKSLRRTKVGIFSVENAIKLEELLRMTEQD----------IESRLIDIK 230 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + L F G + ++GLV+V + +N +F+G+GEI + + P Sbjct: 231 DALYFFTEILLDPVFDERFIKGQRFKVP-YSIKGLVKVLD-KNKRFLGIGEIKENQILQP 288 Query: 306 RRLVV 310 ++ + Sbjct: 289 VKVFI 293 >UniRef50_A6C3H8 tRNA pseudouridine synthase B n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C3H8_9PLAN Length = 310 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 145/320 (45%), Gaps = 19/320 (5%) Query: 1 MSRPRRRG-RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 MS + I+G+L ++KPQ ++S + +V+++ R GH G LDPLATG+L +C Sbjct: 1 MSSKKSGADLKISGLLNINKPQDITSRQVVDQVQKLIKPARVGHAGTLDPLATGVLVLCT 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGD 118 G T+ + + K Y LG+R+DT D G+I E + +L L F G Sbjct: 61 GSNTRLIRLVQQQPKEYIGEFLLGKRSDTDDITGEISETADCRQVTLPELETCLPAFEGR 120 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 I+QIP YSA+ G++ Y+ AR+G + R + VYE+ + +L I C GT Sbjct: 121 IQQIPPQYSAVHINGRRAYDLARRGKSFEIQPREVDVYEIELLDFSFPRFQLRIVCGSGT 180 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIR+I DLGE+LG GA + L R + + ++ + L+ + + Sbjct: 181 YIRSIGRDLGEQLGVGATMSALTRTRIGPFTLDSAMELDE------------ELSLGTIA 228 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS----GAPLEGLVRVTEGENGKFIGM 294 + P P + + G ++ A E + + + + Sbjct: 229 DNIQPAILAVEQLPHYHCNERELLSLSQGQKLKCKPEYFPATHEIIEVAVISPQTELVAI 288 Query: 295 GEIDDEG-RVAPRRLVVEYP 313 + + E +++PR++ P Sbjct: 289 ADWEPEAHQLSPRQVFHPAP 308 >UniRef50_UPI0001C373A4 tRNA pseudouridine synthase B n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373A4 Length = 297 Score = 293 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 156/298 (52%), Gaps = 14/298 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L ++KPQ +S D + K++ I R GH G LDP+ATG+LP+ +G ATK + Sbjct: 1 MNGILCVNKPQDFTSFDVVAKLRGILKMKRLGHGGTLDPMATGVLPVFVGNATKAVDIMP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y RLG +DT D G + S +++ A L FRG+I QIP MYSA++ Sbjct: 61 VTLKSYTADFRLGFTSDTQDVWGNAEKVSDKAVSPDEIEAVLPQFRGNIMQIPPMYSAVQ 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--NELELEIHCSKGTYIRTIIDDLG 188 G++LY+ AR+GIEV R+ R ++ L + ++ E LEI CS+GTY+RTII+D+G Sbjct: 121 VNGQRLYDLARKGIEVERQPRETEIHTLNMLSYDPVTREGVLEIECSQGTYVRTIINDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 EKLG G + L R + + + T + +++ ++ L++P++ Sbjct: 181 EKLGVGGIMTGLVRNSACGFALSECHTFDEIQKAADEGRVG---------ELILPIERVF 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPV---RTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 P + L + ++NG + R + G +G FIG D E + Sbjct: 232 DTLPKLRLGEAQTRMYRNGVKLDLERIRNIREDADCYAVYGSDGGFIGTALTDRENGI 289 >UniRef50_Q1IPJ6 tRNA pseudouridine synthase B n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IPJ6_ACIBL Length = 302 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 154/301 (51%), Gaps = 12/301 (3%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++ VL++DKP G +S+D + +++R+ + AGH G LDP+ATG+LP+ LG T+ SQ+ Sbjct: 2 PLDAVLVIDKPAGWTSHDVVARLRRVLSERSAGHLGTLDPMATGVLPVVLGRYTRLSQFY 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 S+K Y R G T+T DA+G+ V E + V + E + A F G + Q+P +SA Sbjct: 62 NHSEKSYEGEIRFGFATNTYDAEGETVGEAQTVQVALEGVREASREFVGPLSQLPPPFSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-LELEIHCSKGTYIRTIIDDL 187 K G Y+ AR+ +EV + I V++ + + H S GTYIR++ DL Sbjct: 122 KKINGVPAYKLARKNVEVELKPSAIEVFQFEVFEGSAPDRIGFRAHVSSGTYIRSLAHDL 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+KLGCGAH+ LRR V+++ +++ TLE + V + +++ ++P Sbjct: 182 GQKLGCGAHLASLRRTTVAEFTIDQAHTLEAVETAVAKGNPEELFVHP---RRILP---- 234 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P V + Y +NG V LV+V G + + + + P+ Sbjct: 235 --QLPCVTANDETVAYIRNGRAVNLPEFSKAKLVKVFAG-QAEIVCVAQRIAGTLFHPKL 291 Query: 308 L 308 + Sbjct: 292 V 292 >UniRef50_Q5FQM1 tRNA pseudouridine synthase B n=9 Tax=Acetobacteraceae RepID=TRUB_GLUOX Length = 333 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 155/322 (48%), Gaps = 18/322 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R R GRDI+G L+LDKP G +S D + K++ ++A +AGH G LDPLA+G+LPI G Sbjct: 1 MGRKR--GRDIDGWLILDKPLGPTSTDMVNKLRWAFDAKKAGHGGTLDPLASGVLPIAFG 58 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 +AT+ Y++D+ KRYR G+ T D +G+++ P + +Q+ A L G++ Sbjct: 59 KATRTIPYIMDATKRYRFTLTFGESRTTDDLEGEVLATSPNRPTDDQIRAVLPALTGNVM 118 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGTY 179 Q+P ++SAL+ G++ Y+ AR G RP + + + + N ++ KG Y Sbjct: 119 QVPPVFSALRVGGERAYDMARAGRPPELPPRPARIDSITLVERPDANTAVFDVQSGKGVY 178 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R++ D+ G H+ LRR + + +T++ + Q + A+ L Sbjct: 179 MRSLARDIALACGTVGHISVLRRTKCGPFDLSHALTIDQIS---LDKSTQTVDNADALPA 235 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGN---------PVRTSGAPLEGLVRVTEGENGK 290 L+ + D P + + G P+ S + L R GE Sbjct: 236 PLLDAATALVDIPALAVTDAEGRMLVWGQSIDPADLVHPLPASSQGEDHLWRAMIGE--H 293 Query: 291 FIGMGEIDDEGRVAPRRLVVEY 312 +G+ + GR+ R++ + Sbjct: 294 VLGLCHVR-HGRLRAARMLENH 314 >UniRef50_UPI000185BE2E tRNA pseudouridine synthase B n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BE2E Length = 328 Score = 292 bits (749), Expect = 9e-78, Method: Composition-based stats. Identities = 94/323 (29%), Positives = 162/323 (50%), Gaps = 26/323 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++++DKPQG +S+D + K++RI+ + GH+G LDP+ATG+L + +G T+F ++ Sbjct: 10 SGIVIVDKPQGWTSHDVVGKLRRIFRTKKVGHSGTLDPMATGVLVLGIGRGTRFLPHVHA 69 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K YR RLG T T DA+G+++ E + + E + + F G I Q P+ SA+K Sbjct: 70 DTKSYRATIRLGAATLTDDAEGELLSESSAASVTDEMIREKITDFTGTIMQKPAAVSAVK 129 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH----------EGNELELEIHCSKGTYI 180 G + YE R+G +V ARP+T+ + E ++++E+ CS GT+I Sbjct: 130 IDGVRAYERIRRGEKVDIPARPVTITRYEVLDIRHDSDTSRPGECIDIDVEVDCSAGTFI 189 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + DLG+ LG G H+ LRR A + ++ +T++ L EQ + + AE+ P+ Sbjct: 190 RALARDLGDALGVGGHLTALRRTAAGVFTIDEALTIDELTAKAEQFDTANPEIAEMRRPI 249 Query: 241 ------LMPM---DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKF 291 L+PM ++ + + + G + G P V GK Sbjct: 250 PDRAASLLPMSLDEACLRCFDTREITEQQAADLAQGKWLEPIGKPG---VYAAVSPTGKV 306 Query: 292 IGMGEIDDEGRVAPRRLVVEYPA 314 + + + G+ + + V PA Sbjct: 307 PAL--LTESGK-RAKTVFVVRPA 326 >UniRef50_C4V3N1 tRNA pseudouridine 55 synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3N1_9FIRM Length = 290 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 144/304 (47%), Gaps = 22/304 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + + KP GMSS+D + V+RI++ R GH G LDP A G+LPI LG A + +YL Sbjct: 1 MDGFINVLKPTGMSSHDVVDVVRRIFHQKRVGHAGTLDPAAAGILPIALGRAARLVEYLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVE--ERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 +DK YR G TDT D G + E E PV +AE++ A L FRG I Q P YSA Sbjct: 61 GADKSYRAEIAFGYATDTGDVYGMVTERSEHPVLPAAEEIEAVLARFRGCITQRPPAYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDD 186 +K GK+ + RQG V R +T++ L + + + +++ CSKGTYIR++ D Sbjct: 121 IKVGGKRAADLVRQGRAVDIPPRKVTIHRLELLHIDAVRQRIRIDVDCSKGTYIRSLCAD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G L A + +L R V + + T E L E E A + D Sbjct: 181 IGAGLHLPATMRFLLRSRVGAFTLADAYTPEELAEAGEDA--------------VCAADR 226 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-GRVAP 305 P L F +G GL RV +G F+G+G D + P Sbjct: 227 AL-SLPCYELTQQRVKAFYSGLSTTERRPLAAGLYRVYA--DGVFLGIGRYDANAQEMYP 283 Query: 306 RRLV 309 + Sbjct: 284 EKAF 287 >UniRef50_C7RGP3 tRNA pseudouridine synthase B n=4 Tax=Anaerococcus RepID=C7RGP3_ANAPD Length = 298 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 104/304 (34%), Positives = 165/304 (54%), Gaps = 16/304 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L +DK +G+SS + V+R N + GHTG LD A+G+LPI +G+AT+ S Y++D Sbjct: 3 SGILNVDKEKGISSARVVSLVRRGLNQKKVGHTGTLDLEASGVLPIVVGKATRVSDYMMD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y + G++TDT DA G++++E T E L L+ ++G+IEQIP MYSALK Sbjct: 63 KDKTYECLMEFGKKTDTLDAAGEVIKESSKTCKREDLEEVLEKYKGEIEQIPPMYSALKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GKKLY+ AR G E+ R+ R + +Y+L I + ++ + CSKGTYIRT++DD+GE L Sbjct: 123 DGKKLYDLARSGKEIERKKRKVKIYDLKLIDFDFPYAKISVTCSKGTYIRTLVDDIGEDL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 C + V LRR+ + + V+ V + E+ + L L +D + Sbjct: 183 ECLSFVKELRRVRIGDFLVDEAVKSSDILEM----------DKDKLISKLERVDKALDKF 232 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMG---EIDDEGRVAPRRL 308 P +L NG ++ + ++ VRV +FIG+ E + ++ Sbjct: 233 PRFDLADNLFDKAVNGMTIKID-SKIDEEVRVY--SRNEFIGLAKSFESRGGYFLKMEKV 289 Query: 309 VVEY 312 + Sbjct: 290 FYDR 293 >UniRef50_C5RBC4 Pseudouridylate synthase n=2 Tax=Lactobacillales RepID=C5RBC4_WEIPA Length = 336 Score = 292 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 90/317 (28%), Positives = 147/317 (46%), Gaps = 21/317 (6%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 + + R ++G++ + K +GM+S+D + K++RI + GH G LDP G+LP+ LG+AT Sbjct: 27 QKSKVRSMDGIIPIYKDKGMTSHDVVFKLRRILKMKKIGHAGTLDPNVDGVLPVALGKAT 86 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGDIEQ 121 K ++L ++ K Y LG T T D DG +++ + FS +++ + T G I Q Sbjct: 87 KTIEFLQETGKIYTGSITLGIATTTEDMDGDVIQTQHLVKPFSNDEINKGMRTLTGHITQ 146 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR-------HEGNELELEIHC 174 IP MYSA+K G++LY+YAR G V R R +YE Sbjct: 147 IPPMYSAVKVNGRRLYDYARAGETVERPKREAVIYEFKMTSATTFDEKKGTQTFSFLARV 206 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKGTYIRT+ DLG +L + + L R++ Y + + L+ + + + + Sbjct: 207 SKGTYIRTLAVDLGRQLQVPSVMSQLTRISAGGYDITQAHRLDEIAQRMTE--------K 258 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKN--GNPVRTSGAPLEGLVRVTEGENGKFI 292 L LMP+++ + Y V L K+ G P E +V +G+ Sbjct: 259 GSLGDWLMPLETAVAQYTHVELNDEQWEKVKHGIGQPASLHEPTTEKIVLTYKGDVKSVF 318 Query: 293 GMGEIDDEGRVAPRRLV 309 D+ + R Sbjct: 319 AW--RPDKNQYRTYRTF 333 >UniRef50_D2R7P9 tRNA pseudouridine synthase B n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7P9_9PLAN Length = 301 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 85/308 (27%), Positives = 141/308 (45%), Gaps = 23/308 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L+++KP G +S D + +V+R + GH G LDPLATG+L I +G T+ +Y+ Sbjct: 1 MDGILIVNKPAGPTSRDVVNRVQRCVKPAKVGHAGTLDPLATGVLVIGIGAGTRLVEYVQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQ-IVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y RLG +DT D G I + S + L L F G I Q P YSAL Sbjct: 61 QMPKTYVGQFRLGISSDTEDITGCCITHDESPVVSRDDLRRVLPRFLGKISQKPPAYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K +G++ Y+ AR+G V R I + L R + + EL I C GTY+R++ D+ Sbjct: 121 KVEGERAYDLARRGETVELAPREIVIRRLELTRFDYPDFELVIDCESGTYVRSLGRDIAS 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 L A + L R ++ + +ER +T++ + E + L+P+ + Sbjct: 181 ALETHAVMTDLIRTSIGSFSLERAITMDSIS-------------RETITEHLLPLLAATE 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAP-----LEGLVRVTEGENGKFIGMGEI--DDEG- 301 P V L S + G + + + + + + E+ D+G Sbjct: 228 QLPQVLLTEESVRSLQQGKRIAAPPVDLCLDTTQTVEVAAIDSRDRLVAICELTHRDDGS 287 Query: 302 -RVAPRRL 308 + P ++ Sbjct: 288 ALLKPHKV 295 >UniRef50_C2KV13 tRNA pseudouridine 55 synthase n=6 Tax=Bacteria RepID=C2KV13_9FIRM Length = 531 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 87/219 (39%), Positives = 135/219 (61%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ ++K +GM+S D L+ ++RI + GHTG LDP+A G+L +C+G+ATK+ L+ Sbjct: 1 MDGIINVNKEKGMTSFDVLRALRRILREKKMGHTGTLDPMAEGVLLVCVGKATKYVDALM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y+ LG TDT D+ G+I+ E V+ S E + L F G EQIP MYSA K Sbjct: 61 AKEKIYQAELTLGIETDTEDSTGKILSEEEVSISKEDIEKILPRFLGKQEQIPPMYSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +GKKLYE AR+G V R+ I ++ L + ++ +L IHCSKGTYIRT+ D+GE Sbjct: 121 LEGKKLYELAREGKTVERKPSQIEIFALEILSYDCPKLRFRIHCSKGTYIRTLCKDIGEA 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 LG A + L R V ++ ++ +L + +L + ++ Sbjct: 181 LGTKACMSALLREQVGEFSLKNSFSLSEIEKLEGEGKRD 219 >UniRef50_Q1WUF2 tRNA pseudouridine synthase B n=28 Tax=Firmicutes RepID=TRUB_LACS1 Length = 302 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 158/309 (51%), Gaps = 20/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L L K +GM+SNDA+ K ++I+ + GH+G LDP G+LPIC+G+ATK YL+ Sbjct: 1 MDGILPLYKERGMTSNDAVIKCRKIFKTRKIGHSGTLDPEVDGVLPICVGKATKVVNYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 DS K Y+ LG T T D +G+++ + + FS E++ L +F GDI Q+P +YSA Sbjct: 61 DSGKVYKGEITLGFATTTEDLEGEVISKVKLSEPFSDEKINEILSSFIGDIIQVPPIYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFI-------RHEGNELELEIHCSKGTYIR 181 +K GKKLYEYAR G +V R + + I + E+ C KGTY+R Sbjct: 121 IKVNGKKLYEYARAGEKVDIPERRVHIEYFKQIFPSKFDKEKGQQTIYFEVGCGKGTYVR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G+KLG A + L RL + + +L L +L + + L L Sbjct: 181 TLAVDVGKKLGVPAVMSDLTRLKSGGFQIGMAKSLSQLEKLAHENK---------LSESL 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE- 300 P+D D P +L L KNG + + + RV + + + + + E Sbjct: 232 YPIDYAVKDLPRYDLKLEQWRIVKNGGFLSVNTFKED-YDRVNLFYDDRIRCIYQYNKEK 290 Query: 301 GRVAPRRLV 309 R R++ Sbjct: 291 NRYQSERMI 299 >UniRef50_A7H9F6 tRNA pseudouridine synthase B n=4 Tax=Anaeromyxobacter RepID=A7H9F6_ANADF Length = 315 Score = 290 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 115/313 (36%), Positives = 158/313 (50%), Gaps = 28/313 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I GVL++DKP G +S D +Q+V+RI A RAGH G LDP ATG+L IC+G+A K QYL Sbjct: 3 IAGVLVVDKPAGPTSFDVVQRVRRILRAPRAGHAGTLDPAATGVLAICVGDAVKLQQYLS 62 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D+DK Y G TDT DA+G++VE +AE+L A L FRGDI Q+P MYSA+ Sbjct: 63 DADKAYEATVAFGAATDTEDAEGRVVERGDPSRLTAEELRAVLPRFRGDISQVPPMYSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYEL-------------LFIRHEGNELELEIHCSK 176 + G++L+E AR G V R R + V L + C K Sbjct: 123 RVGGRRLHEAARAGESVERAPRQVRVDALELLELLPLEPPQDRVEAAPVRLARFTVRCGK 182 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTY+RT+ DLG LG AH+ LRR S + E VTLE L E Sbjct: 183 GTYVRTLAADLGRALGVPAHLAALRRTEASGFRAEEAVTLEEAERL----------GREA 232 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGE 296 L L+P+ +PV+ + + +G +R AP + R +G+ + + Sbjct: 233 LLARLVPLGDALRTFPVLEVSWAEARDLAHGRALRRELAPGKAAARA---PDGRLVAVCA 289 Query: 297 IDDEGRVAPRRLV 309 D G + P R++ Sbjct: 290 AGDRG-LCPERVL 301 >UniRef50_C1F2Z6 tRNA pseudouridine synthase B n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2Z6_ACIC5 Length = 313 Score = 290 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 98/304 (32%), Positives = 153/304 (50%), Gaps = 11/304 (3%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 R +NG+L++DKP G++S+D + +V+R GH G LDP+ATG+LP+ LG+ T+ + Sbjct: 19 EARQVNGLLIVDKPGGITSHDVVARVRRATGEKSIGHLGTLDPMATGVLPLLLGKFTRLA 78 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSM 125 QY S+K Y R G TDT DA+GQ E RP+T S E+L A F+G IEQ+P Sbjct: 79 QYFGSSEKSYTGTIRFGFATDTYDAEGQPSSEPRPLTHSLEELRALAARFQGQIEQMPPP 138 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA K G+ Y+ AR G A P+T++E + + + S G Y+R++ Sbjct: 139 FSAKKIGGQPAYKAARAGETPQLRAVPVTIHEFVLESLAEDTAAFRMQVSAGGYVRSVAH 198 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 +LG GCGAH+ LRR A + + + L+ + L AA+ L+ + Sbjct: 199 ELGAAAGCGAHLASLRRTAAGAFTLAEALPLDEIECLA---------AAKELEARMPHPR 249 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + P V L ++ +NG V +VR+ G+ I +G P Sbjct: 250 AILPEMPAVTTDLQTAGRLRNGMQVNLPDFSTAPMVRIFVGQRD-LIAIGRRVAGTLFQP 308 Query: 306 RRLV 309 ++ Sbjct: 309 VAVL 312 >UniRef50_B7KGX7 tRNA pseudouridine synthase B n=19 Tax=Cyanobacteria RepID=TRUB_CYAP7 Length = 308 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 104/313 (33%), Positives = 153/313 (48%), Gaps = 27/313 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L+KP G +S+D + K++R+ R GH G LDP ATG+LPI +G+AT+ +L Sbjct: 8 MLGFLNLNKPGGWTSHDCVAKIRRLLKIKRVGHGGTLDPAATGVLPIAVGKATRLLPFLP 67 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y+ RLG T+T D G+I++ + EQ+ L F G+IEQIP +SA+ Sbjct: 68 E-KKAYQARIRLGVTTNTDDLQGEILQIGSANHLTLEQIDPLLRQFIGEIEQIPPAFSAI 126 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDD 186 GK+LYE AR+G V +R + V ++ + E ELELEI C GTYIR+I D Sbjct: 127 SQGGKRLYELARKGELVTPPSRIVHVEKINILDWYPGEHPELELEIICGGGTYIRSIARD 186 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG LG G + L R + + +TL L Q L+ Sbjct: 187 LGNLLGVGGTLANLIRTQSCGLELSKSLTLADLETQQHQGNLP-----------LIFPQL 235 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSG---APLEGLVRVTEGENGKFIGMGEI------ 297 ++L + + G + P V+V GENG F+G+GEI Sbjct: 236 ALKHLLTISLSAPEARRWCQGQSIVIINSIKLPQSQSVQVV-GENGDFLGIGEIATVNIS 294 Query: 298 -DDEGRVAPRRLV 309 D E + P+ ++ Sbjct: 295 DDREQTLIPKVVL 307 >UniRef50_Q02Z55 tRNA pseudouridine synthase B n=21 Tax=Streptococcaceae RepID=TRUB_LACLS Length = 330 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 102/336 (30%), Positives = 155/336 (46%), Gaps = 44/336 (13%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++NG+L + K G +S D + K++ I + GH G LDP TG+LPI +G++T+ +Y+ Sbjct: 4 NLNGILNVYKEAGWTSFDVVAKLRCILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYM 63 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYS 127 + K Y +G T+T DADG IV + PV + ++ +A+ F G I+QIP MYS Sbjct: 64 EAAGKIYEGQVTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSRFVGKIKQIPPMYS 123 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYEL---LFIRHEGNE----LELEIHCSKGTYI 180 A+K GKKLYEYAR G + R AR IT+ I E ++ CSKGTY+ Sbjct: 124 AVKINGKKLYEYARAGQTIERPAREITIKSFVRTSPIDWNKEEGLVTFSFKVECSKGTYV 183 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT+ DL + LG H+ L+R A + ++ + L + E+ E + L + Sbjct: 184 RTLAVDLADSLGYAGHMSKLQRTASNGLLIKDAIKLSKIEEIQESGK---------LSTI 234 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE---------------------- 278 L P + SD P VNL + G S E Sbjct: 235 LYPAEYAVSDLPRVNLTTVQFDMARVGKKFAQSDWTNEVETADSSVNKTKQQEYLLTDLS 294 Query: 279 --GLVRVTEGENGKFIGMG--EIDDEGRVAPRRLVV 310 + N K + + + EG P +++V Sbjct: 295 LLTTEKFAAFYNDKLVAVYMKHPEKEGIWKPNKVLV 330 >UniRef50_B4WM04 tRNA pseudouridine synthase B, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WM04_9SYNE Length = 322 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 159/329 (48%), Gaps = 42/329 (12%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+G + L+KP G +S+D + + +++ + GH G LDPLATG+LP+ +G AT+ QYL Sbjct: 2 IHGFINLNKPVGWTSHDCVARTRKLLGTKKIGHGGTLDPLATGVLPLAVGRATRLLQYLP 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K YR + R G T T D +G I +++ + AAL F G IEQ+P MYSA+ Sbjct: 62 EG-KAYRAVIRFGVITTTDDLEGNIAKQQDATELEEAAVDAALSQFIGKIEQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---NELELEIHCSKGTYIRTIIDD 186 + +G++LY+ AR G V R +T+ L+ + EL ++I C GTYIR++ D Sbjct: 121 QVEGRRLYDLARAGKAVEVPKRVVTIEHLVSQSWKPGVQPELTVDIKCGAGTYIRSLARD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LGE +G GA + L R S + + +TLE+L + + Q + A + Sbjct: 181 LGEAVGTGATLAGLTRTYSSGFKLTDSLTLENLEKAIAQNTFAPVSAGKA---------- 230 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEG---------LVRVTEGENGKFIGMGE 296 + LP + ++ G + +G P+ VR+ E F+G+GE Sbjct: 231 -MEHLAAITLPPDLARRWQLGQKLEITAGIPIPQPIGDHANYPPVRILEATTQTFLGIGE 289 Query: 297 IDD----------------EGRVAPRRLV 309 I + P+R+ Sbjct: 290 IRSLPFDPLPSDPLSVECATKILVPKRVF 318 >UniRef50_Q2LWU1 tRNA pseudouridine synthase B n=1 Tax=Syntrophus aciditrophicus SB RepID=TRUB_SYNAS Length = 312 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 102/321 (31%), Positives = 156/321 (48%), Gaps = 29/321 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L+LDK G +S +Q+VKRI +AGH G LDPLATG+LP+CL EATK Q+L Sbjct: 1 MDGILILDKSPGKTSQKVVQEVKRILGVRKAGHAGTLDPLATGVLPLCLNEATKLVQFLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK YR LG T+T D +G+I + R ++ AL F G I Q P YSA+K Sbjct: 61 LDDKEYRATMLLGVTTETMDIEGRITDRREPEVDEVRIREALQFFTGPISQEPPRYSAVK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 ++G+ LY +AR+G+++ R + VY + + + CSKGTYIRT+ DLGE+ Sbjct: 121 FKGRPLYSWARKGVDIALPPRTVQVYSSILEEIALPYVTFRVACSKGTYIRTLCADLGER 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + LRRL + +E V+LE + + E L ++P+ + Sbjct: 181 LGCGACMSVLRRLRCGCFTLETAVSLEDIAD---------GKGRETLLSRVIPLSDGLRN 231 Query: 251 YPVVNLPLTSSVYFKNG--------NPVRTSGAPLEGLVRVTEGENGKFIGMGE------ 296 + + S ++G +V+ G + + Sbjct: 232 VAAIEISEELSGRIRDGFQPDGSTLREYHIPSLADGDMVKFLTSSGG-LVAVARFLYASD 290 Query: 297 ---IDDEGR--VAPRRLVVEY 312 + D G+ V R+ + Sbjct: 291 QLAVSDMGQPAVRILRVFHDR 311 >UniRef50_C6HXK4 tRNA pseudouridine synthase B n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HXK4_9BACT Length = 320 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 158/304 (51%), Gaps = 17/304 (5%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++G+LL+DKP G +S+D + +V+++ ++ GH G LDP+A+G+LP+ +GEATK S Sbjct: 8 NPVKVSGMLLVDKPAGPTSHDIVHRVRKLTGIDKVGHGGTLDPMASGLLPLLVGEATKMS 67 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE--QLAAALDTFRGDIEQIPS 124 ++L DK Y LG TDT D+ G +V V +L F G+ Q P Sbjct: 68 SFILADDKSYEFDLTLGATTDTDDSTGVVVSTHSVPEDLSSVRLRTVARDFEGERFQQPP 127 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSA+K QG LY+ AR+G+ VPRE R I +Y L I E L +HCSKGTYIR + Sbjct: 128 MYSAVKQQGVPLYKLARKGVTVPREPRRIEIYSLELIAVEPPVLTFRVHCSKGTYIRVLA 187 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 ++GE L GAH+ LRRL+V + + TL + ++ A + + LL P Sbjct: 188 REIGEALSTGAHLSRLRRLSVGTFSLAEATTLAVME--------KEWAAPDFIRNLLGP- 238 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGA-PLEGLVRVTE-----GENGKFIGMGEID 298 D P V L +S G + + EGL + + G++GK + E Sbjct: 239 DRVFDTLPGVRLLGEASTRLLKGALLPATAIFRREGLFHMKDMIRILGQDGKIRAIAEAL 298 Query: 299 DEGR 302 EG Sbjct: 299 REGE 302 >UniRef50_Q0C5Z2 tRNA pseudouridine synthase B n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C5Z2_HYPNA Length = 313 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 100/321 (31%), Positives = 151/321 (47%), Gaps = 20/321 (6%) Query: 1 MSRPR-RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R R R+G + G + L KP M+S A+ +KR+YNA + GH G LDPLA G+LPI L Sbjct: 1 MARQRKRKGEPVTGWINLFKPVDMTSTQAVAIIKRLYNAEKVGHGGTLDPLADGILPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 G+ATK Q+ +D+ K Y R G T + DA+ +I V + AAL + G I Sbjct: 61 GQATKTVQWAMDAHKEYVFTIRWGISTASQDAEAEITATSDVRPERAAIEAALTRYVGTI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGT 178 +Q+P YSA+K G++ Y+ R+G EAR + V+ I + + + + KG Sbjct: 121 QQVPPKYSAIKVAGERAYDLVREGEAFELEAREVDVHAANVIGMPDADHTVIHVVSGKGF 180 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 Y+R + DL LG H+ LRR V + V++E L L E L Sbjct: 181 YVRALARDLAFDLGAEGHISQLRRTRVGAFDAPSAVSIEALEALKE--------DKPGLM 232 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKF------- 291 +L P+ + S P V + + + G V +EG E+ + Sbjct: 233 AILKPLHAVLSGMPQVQVSPHDAANIRQGRSVVLLPHVVEGWRAGRSEEDDRVALALAGD 292 Query: 292 --IGMGEIDDEGRVAPRRLVV 310 I +GE+ G+ P R+ Sbjct: 293 EAIALGEVRA-GQFEPVRVFA 312 >UniRef50_B9KZ57 tRNA pseudouridine synthase B n=2 Tax=Thermomicrobia (class) RepID=B9KZ57_THERP Length = 302 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 13/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+LL+DKP+G +S+D +Q V+ GH G LDP A G+L I +G AT+ ++ Sbjct: 1 MHGILLVDKPRGWTSHDVVQWVRTRLRVQTVGHGGTLDPAAEGLLVIAVGIATRLVRHAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP---VTFSAEQLAAALDTFRGDIEQIPSMYS 127 D+DK Y LG T + D +G+ + P S + +AL F G+ EQ P +YS Sbjct: 61 DADKSYVAHIVLGTGTTSDDLEGEPLAASPLSLYRPSLRDVQSALAEFLGEYEQQPPIYS 120 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 ALK G Y AR G VP + R + V L +++ +L + + C KG Y+R+ DL Sbjct: 121 ALKVGGVAAYRRARAGQPVPLKRRVVRVNSLRLVQYSYPDLIVSLDCGKGFYVRSFARDL 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G +LG GA++ L R V ++ + +++ L ++ + I D Sbjct: 181 GTRLGTGAYLHGLVRTRVGRFSLASAWSIDELNRVLTPSSWPLIARH---------PDEF 231 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR-VAPR 306 ++ PV+ +P + +G PVR S + G +G +IG+ D + R P Sbjct: 232 VAELPVLLVPERELRAWYHGAPVRCSASSSPGTTARAYAPDGNWIGLAHFDPQKRYWQPV 291 Query: 307 RL 308 + Sbjct: 292 LV 293 >UniRef50_C4FYS6 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYS6_ABIDE Length = 309 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 93/318 (29%), Positives = 154/318 (48%), Gaps = 29/318 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 INGV+ + K G +S DA+ ++ I + GHTG LDP A G+LP+C+G+ATK + L Sbjct: 2 INGVINVYKEVGYTSRDAVSRLTGILRQRKIGHTGTLDPAAEGVLPMCVGKATKLCELLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-------FSAEQLAAALDTFRGDIEQIP 123 K+Y + +LG TDT D G+I E+ +AE L D F G Q P Sbjct: 62 GHKKQYIAVMKLGIATDTEDTTGEITEKTNYPENWYEENLTAENLTKITDKFIGTQFQTP 121 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIR 181 MYSA + G++LYE AR+G + R+ ITVY + + E+ + + CSKGTYIR Sbjct: 122 PMYSAKRVNGRRLYELAREGKVIERKPCEITVYGIEIKNIDIINREITVIVDCSKGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+GE LGC A + L R + +E L+ + ++V++ +D ++ Sbjct: 182 TLCKDIGEALGCKAAMKSLLRTRTGDFYLENSYKLDEIEKIVKENR---------VDEII 232 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVR---------TSGAPLEGLVRVTEGENGKFI 292 +P++ + +++ + V NG V R+ ++G+F Sbjct: 233 IPIEKIFYNLRRIDVTGYAGVLLDNGGIVNMEEARLEPGFDNIKDGEKFRMY-NKDGEFK 291 Query: 293 GMGEIDDE-GRVAPRRLV 309 + ++ + ++ Sbjct: 292 AVYCYYEKINALKIDKMF 309 >UniRef50_C8WWJ2 tRNA pseudouridine synthase B n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWJ2_ALIAD Length = 302 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 101/314 (32%), Positives = 144/314 (45%), Gaps = 24/314 (7%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + ++GVLL+DKPQGM+S+D + +V+R R GH G LDP+ATG+L IC+G T+ +Y Sbjct: 2 QALDGVLLIDKPQGMTSHDVVNRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEY 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYS 127 L DK Y G TDT DA+G +V + + A G+I Q P YS Sbjct: 62 LGQGDKDYSGTVVFGVGTDTDDAEGTVVAQASAAGLDLAAVRQAALRLTGEIRQRPPQYS 121 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN----ELELEIHCSKGTYIRTI 183 A+ G++ Y+ ARQG +V R + V + CSKGTY+R + Sbjct: 122 AVHIDGRRAYDLARQGKKVELPERTVRVQAFTLDEFRHEGELAVARFHVRCSKGTYVRAL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DLG +G AH+ LRRLA+ VE ++L+ PA+ L DPLL Sbjct: 182 CRDLGALVGLPAHMRSLRRLAIGSARVEDAISLDD-------WMASGDPASHLRDPLL-- 232 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSG---APLEGLVRVTEGENGKFIGMGEIDDE 300 P+ P NG V LV V + G +GE+ D Sbjct: 233 ---YLEGLPMWQPPREVLERLANGQTVEVGDLLSLSPGDLVLVIDA--GAVAAVGEVVDH 287 Query: 301 G--RVAPRRLVVEY 312 V P+++ + Sbjct: 288 QPAAVRPKKVFWKR 301 >UniRef50_P59881 tRNA pseudouridine synthase B n=15 Tax=Cyanobacteria RepID=TRUB_PROMM Length = 320 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 149/323 (46%), Gaps = 38/323 (11%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G +++DKP G++S+D + +++R++ R GH G LDP TG+LPI LG AT+ YL + Sbjct: 6 GFVVIDKPAGITSHDCVSRMRRVFGIKRVGHGGTLDPAVTGVLPIALGHATRLLPYLPGA 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR +LGQRT + D G ++ ++ + ++ A L+ FRG I+Q P SA+ Sbjct: 66 -KSYRGSIQLGQRTSSDDQQGDLISKQAWPELNTAEIEAYLEPFRGRIQQRPPQVSAVHV 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGN--ELELEIHCSKGTYIRTIIDDLGE 189 QG++ + AR+G + AR IT+ L + +++ +HCS GTYIR++ DLGE Sbjct: 125 QGERAHARARRGETMEIPARTITIDRLQLLNWNQQLGQIDFNVHCSSGTYIRSLARDLGE 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +GCGA + +L+R + ++ V L A P ++P + + Sbjct: 185 LIGCGACLGWLKRTQALGFHEQQAVPLPD-----------RDNPALTTPPAVLPPLTALA 233 Query: 250 DYPVVNLPLTSSVYFKNGNPVRT-----------------------SGAPLEGLVRVTEG 286 P + L + G + + + V Sbjct: 234 HLPRLQLNEEEQESWSCGRRITAHQDQCQPAPKPLASDQQESAPNQTDPSANKSMLVVID 293 Query: 287 ENGKFIGMGEIDDEGRVAPRRLV 309 G+ GM +D V P+ + Sbjct: 294 CRGEVAGMAYWEDNATVKPKVVF 316 >UniRef50_Q4FVL3 tRNA pseudouridine synthase B n=10 Tax=Bacteria RepID=TRUB_PSYA2 Length = 380 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 109/281 (38%), Positives = 153/281 (54%), Gaps = 16/281 (5%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNA-----NRAGHTGALDPLATGMLPICLG 60 I+GV+L+DKPQGM+S + KVK ++ + +AGHTG LDP+ATG+LPICLG Sbjct: 16 PDKIKISGVILVDKPQGMTSQQVVSKVKYLFKSPNHDSKKAGHTGTLDPMATGLLPICLG 75 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFS Y LD+DK Y+ LG +TDT DADGQ+ E ++ F L F G Sbjct: 76 EATKFSHYQLDADKSYQATILLGSQTDTGDADGQVTAEATISAFDDTMLDKIAQQFLGAQ 135 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +QIP MYSALK GKKLYEYAR GIEV R R I + + + +++L + CSKGTY Sbjct: 136 QQIPPMYSALKKDGKKLYEYARAGIEVDRPPRDIILKAIELKAIDEQQIQLTVTCSKGTY 195 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R + +D+ + +G H+ L RL V + ++ +TL +L L + Q Sbjct: 196 VRVLAEDIAKAIGTLGHLTALSRLQVGDFKIDETITLANLEALALEQRQ----------T 245 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 L+P+D+ + L + G + L Sbjct: 246 YLLPVDACIDINAELTLSSEQCERVQMGQRLNVIDQLTNDL 286 >UniRef50_A9AV52 tRNA pseudouridine synthase B n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AV52_HERA2 Length = 291 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 19/305 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L +DKPQG++S D ++ VKR R GH G LDP+ATG+LPI LG AT+ +YLL Sbjct: 2 LHGFLNIDKPQGITSTDVVRVVKRNARQKRVGHGGTLDPMATGVLPIALGNATRLLEYLL 61 Query: 71 DS-DKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 + K Y RLG TD+ D +G ++ E P+ + + L FRG I Q+P Y+A Sbjct: 62 EEERKAYTATLRLGITTDSDDVEGAVIAEAPIPPLDPALIESVLSQFRGAINQVPPQYAA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 ++ GK++YEYAR+G + ARPIT+ +L + + +L + + CSKGTYIR I D+G Sbjct: 122 IRVDGKRMYEYAREGKHIELPARPITIEQLDLLAWDAQQLTIAVDCSKGTYIRAIARDIG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCGAH+ LRR + + + L L + E +P + Sbjct: 182 ALLGCGAHLTALRRTRAGAFDLSNSIGLAELDQQPEVFAAALLPPQAAI----------- 230 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV-TEGENGKFIGMGEIDDEGRVAPRR 307 +++P++NL + G V+ RV + G+ + + + + G P + Sbjct: 231 ANWPLINLADAIVADVRMGRVVQVDSQAE----RVGLLDQAGQLVAIAVLREAG-YQPIK 285 Query: 308 LVVEY 312 + Sbjct: 286 VFAAE 290 >UniRef50_B1CB51 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CB51_9FIRM Length = 302 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 92/309 (29%), Positives = 156/309 (50%), Gaps = 21/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGV+ ++K Q M+S+D KV++I + GH+G LDP+A G++ + +G +TK S Y+ Sbjct: 2 LNGVICINKEQDMTSHDVCFKVRKILGTKKVGHSGTLDPMAEGVMGVLVGRSTKLSSYIT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y + G+ +D+ D + + F+ + ++ F GDI Q P +YSA+K Sbjct: 62 SFDKEYIAGIKFGKDSDSYDIWTDMKDVPIPDFTKKDFKKVINRFVGDITQTPPIYSAIK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-LELEIHCSKGTYIRTIIDDLGE 189 +GK LY+YA +G EV +R + + + I ++++ CSKGTYIR++I D+G Sbjct: 122 VKGKPLYKYALKGEEVEIPSREVCIDSIEIIETNLPYSAKIKVSCSKGTYIRSLIHDIGV 181 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG A + L R +E +TL +L + V+ +D ++ D + Sbjct: 182 SLGTSAVMNSLVRTKNGVLNIEDSITLSNLEDKVKSGR---------VDEVIKRDDYFLT 232 Query: 250 DYPVVNLPLTSSVYFKNGNPV-------RTSGAPLEGLVRVTEGENGKFIGMGEIDDEG- 301 D V++ +S NGN + T VR+ KFIG+G+ DE Sbjct: 233 DIHRVDVNPSSGKILLNGNGLIKKNLITPTDDIKPGTTVRLYL--EDKFIGLGKKTDEEG 290 Query: 302 -RVAPRRLV 309 + P +++ Sbjct: 291 ILIRPIKIL 299 >UniRef50_Q0EZ77 TRNA pseudouridine synthase B n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ77_9PROT Length = 307 Score = 284 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 115/314 (36%), Positives = 164/314 (52%), Gaps = 31/314 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIY-----NANRAGHTGALDPLATGMLPICLGEATKF 65 I+GV+ LDKP G +S A+ + R+Y +AGH G LDPLATGMLPI LGEAT++ Sbjct: 2 ISGVVFLDKPYGWTSRQAVNAMIRLYTQPGEKRIKAGHAGTLDPLATGMLPILLGEATRY 61 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 ++ L +DK YRV L +TDT D +G++V + + AL F G IEQ+P Sbjct: 62 AEMGLSADKSYRVSFDLSYQTDTLDCEGEVVARFDGAVNQAAVQTALAAFTGLIEQVPPA 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YSA++ GK+ + AR+G V ARP+TV+ + + E + L++ CSKGTYIR++ Sbjct: 122 YSAIRIDGKRAHAMARKGEAVHIPARPVTVHAITLVAFEFPLVTLQVDCSKGTYIRSLAR 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G LG G V LRRL+ +P MVTLE L+ D ++P+ Sbjct: 182 DIGAALGMGGCVTALRRLSTGGWPEAMMVTLEQLQAQP--------------DSCVLPLA 227 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRT---SGAPLEG----LVRVTEGENGKFIGMGEID 298 + P V L + F G ++ SGAP G VRV GE +G G + Sbjct: 228 QWLREMPGVTLEQDMASRFVQGQRIQLQAASGAPDPGDGQLPVRVFAGE--LLLGTGMLK 285 Query: 299 D---EGRVAPRRLV 309 + P R++ Sbjct: 286 SGHHRTVLHPSRIL 299 >UniRef50_B3CM19 tRNA pseudouridine synthase B n=5 Tax=Wolbachia RepID=TRUB_WOLPP Length = 353 Score = 284 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 151/349 (43%), Gaps = 51/349 (14%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG L LDKP GMSS A+ ++KRI+ +AGH G LDPLA+G+LPI LGEATK YL Sbjct: 2 VNGWLNLDKPTGMSSAQAVTQIKRIFGIKKAGHLGTLDPLASGILPIALGEATKTIPYLS 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y + G++T T D G I+ + Q+ A+ F G+I Q P +SA+K Sbjct: 62 CDLKAYNFTIKWGKQTTTDDLGGDIIRTSDIKPEYNQINCAIKDFIGEITQTPPQFSAVK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLG 188 +G + Y+ AR G +V + R + ++EL I + N + + C G Y+R+I DLG Sbjct: 122 IKGARAYKLARSGQKVNIKPRQVKIHELKMIFLDTINNIADFSMICGSGVYVRSIARDLG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR---------------------------- 220 +L C H+ LRR V + + VT+E L Sbjct: 182 IELNCFGHITQLRRTMVGDFKEDESVTIEQLTKKNTTTYSPQCLTLDTNTYKSCNGQKIL 241 Query: 221 -ELVEQAEQQDIPAAELLDP------------------LLMPMDSPASDYPVVNLPLTSS 261 V+ + +I +LD ++P++S V + L + Sbjct: 242 GAYVKNNVRDEIGLIPVLDTGMTSEGGMTEDDGGNTKGFIIPIESALKSMFKVEISLEEA 301 Query: 262 VYFKNGNPVRTSGAPLEGLVRVTEGENGKF-IGMGEIDDEGRVAPRRLV 309 + G + + + G I + G V P R+ Sbjct: 302 EKIRKGQEIILNNLRNLKNYDIFCTIVGNVPIAICSFT-HGYVKPIRVF 349 >UniRef50_Q5PAY2 tRNA pseudouridine synthase B n=10 Tax=Anaplasmataceae RepID=TRUB_ANAMM Length = 306 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 98/307 (31%), Positives = 153/307 (49%), Gaps = 21/307 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L +DKP MSS + +VK+I+N + GH G LDPLATG+LP+ +GEATK Y +D Sbjct: 9 GWLNVDKPLHMSSGSVVGRVKKIFNC-KVGHAGTLDPLATGVLPVAVGEATKTIPYAVDG 67 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y V + G + T DA+G+I++ + SA+ + AL F G+I Q+P +SA++ + Sbjct: 68 LKSYAVTVQWGSQRSTDDAEGEIIKTSSLRPSADSIREALGQFVGNIRQVPPAFSAVRVR 127 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFI--RHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y AR+G V + + + + + E N + I C KG YIR+ DLG Sbjct: 128 GVRAYRLARRGEAVSLPPKEVCIVSIDLLSADEESNTADFLIVCKKGVYIRSFARDLGAS 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC +V +LRR +V + E VTL+ L L + A++L+ L+P+ D Sbjct: 188 LGCFGYVSFLRRKSVGPFSEENSVTLDRLEALAD---------ADVLNEALLPISYVMGD 238 Query: 251 -YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE-------NGKFIGMGEIDDEGR 302 +++ + K G V L GL + G + + ++ G Sbjct: 239 ALLRLHVDAEVAEIVKKGQSVSLQRTSLNGLYAAENYDMCYLSRVGGVPVAVCKVV-NGT 297 Query: 303 VAPRRLV 309 P R+ Sbjct: 298 ARPVRVF 304 >UniRef50_Q8R5X8 tRNA pseudouridine synthase B n=16 Tax=Fusobacterium RepID=TRUB_FUSNN Length = 287 Score = 282 bits (723), Expect = 8e-75, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 159/295 (53%), Gaps = 14/295 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G+++++KP+G++S D ++K+K+ + GHTG LDPLA G++ +C+G+ATK + L Sbjct: 1 MEGIIVINKPKGITSFDVIRKLKKFLKTKKIGHTGTLDPLAIGVMLVCVGKATKLASDLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y +G TDT D +G+ + E + S E L +L F G+I+Q+P MYSA+K Sbjct: 61 AKDKVYIADFDIGYATDTYDIEGKKIAENIIEVSKENLEQSLKKFIGNIKQVPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G KLY AR+GIEV R R IT+ + + + N+ ++E SKG YIR++I D+G+ Sbjct: 121 IDGNKLYHLARKGIEVERPERDITIEYINLLDFKDNKAKIETKVSKGCYIRSLIYDIGQD 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG A + L+R V +Y +E +LE + E+ + + E + Sbjct: 181 LGTYATMTALQRKQVGEYSLENSYSLEQIEEMTLNNNFKFLKTIEEI-----------FS 229 Query: 251 YPVVNL-PLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 Y NL + +KNGN V+ R+ +FIG+ I++ + Sbjct: 230 YDKYNLQTEKEFILYKNGNTVKIKENLENKKYRIYF--QDEFIGLANIENNNLLK 282 >UniRef50_B5YEH8 tRNA pseudouridine synthase B n=2 Tax=Dictyoglomus RepID=B5YEH8_DICT6 Length = 293 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 86/304 (28%), Positives = 141/304 (46%), Gaps = 21/304 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG LL++KP G++S + +++VK++ + GH G LDP A G+L I LG+ + +YLL Sbjct: 1 MNGFLLINKPPGITSFEVVRRVKKLSKEKKVGHMGTLDPRACGLLIIGLGKYVRLEEYLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQ--IVEERPVTFSAEQLAAALDT-FRGDIEQIPSMYS 127 K Y V G +DT D + ++ + E L L F G+IEQ P YS Sbjct: 61 KLPKTYIVEVLFGVSSDTYDRESYRFFYDKEEKPVNTEILEETLKKYFTGEIEQTPPPYS 120 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--NELELEIHCSKGTYIRTIID 185 A+ +G++ Y AR+ I V R +T+YE + + N + S GTYIR+++ Sbjct: 121 AVHIEGERAYNLARKNISVSLPKRKVTIYESEILNFDKTRNTALIRFKVSSGTYIRSLVH 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+GEKL V +L R + V + ++E + LL P++ Sbjct: 181 DIGEKLNTKTLVSFLVRTDIGHLSVNDSIPYNKIKEGIT-------------KKLLSPLE 227 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 D+PV NGN + + +E G+FI +G++ + P Sbjct: 228 --VLDFPVYKTSEEEEKKILNGNAIEARLSTIESPYISIINSQGRFIAVGKVSGN-IIKP 284 Query: 306 RRLV 309 ++ Sbjct: 285 DKVF 288 >UniRef50_B8DW45 tRNA pseudouridine synthase B n=5 Tax=Bifidobacterium RepID=B8DW45_BIFA0 Length = 350 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 101/345 (29%), Positives = 157/345 (45%), Gaps = 36/345 (10%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +R + +NGVL++DKPQG++S+D + V+ + + GH G LDP+ATG L I +G Sbjct: 1 MGTGKRDAK-VNGVLIVDKPQGVTSHDIVAAVRAALHTRKVGHAGTLDPMATGALVIGVG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVE---ERPVTFSAEQLAAALD-TFR 116 AT+ QY+++ K Y R GQRT T DADG+ VE E V + EQ+ A+ + Sbjct: 60 HATRLLQYIVEHTKTYSATIRFGQRTTTDDADGEFVEREAEAAVLPTLEQVREAVANEYT 119 Query: 117 GDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---------E 167 GDIEQIP+ SA+K G++ Y+ AR+G V +AR +TV+ + + Sbjct: 120 GDIEQIPNAVSAIKVNGQRAYDLAREGRHVELKARRVTVHAFDVLGGRQTQAANGTPVLD 179 Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTL----------- 216 +++ + CS GTYIR + DLG CGAH+ LRR AV + V + Sbjct: 180 VDVRVTCSAGTYIRALARDLGNDFHCGAHLTRLRREAVGAFRVRDARIVRAHAEARTFVN 239 Query: 217 EHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP 276 E+ D +L LL + + PV+ + + + G + Sbjct: 240 RDGEEITRNRAVLDCVGEDLAGHLLTMVQAAQLTLPVLAVSEAQAADLRFGRRIVAQAPT 299 Query: 277 LEGLVRVTEGE-----------NGKFIGMGEIDDEGRVAPRRLVV 310 + GE + + + E P + Sbjct: 300 DDERPAHHHGEHVWAAIGSADGEPEVVAIVERAKHHEFKPVTVFA 344 >UniRef50_B3CTX3 tRNA pseudouridine 55 synthase n=2 Tax=Orientia tsutsugamushi RepID=B3CTX3_ORITI Length = 302 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 88/305 (28%), Positives = 139/305 (45%), Gaps = 12/305 (3%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 ING + L KP G+SS A+ K+K N ++ GH G LD A G+LPI +GEATK Q Sbjct: 2 KSKINGWINLYKPAGISSAQAVAKIKHWLNLSKVGHAGTLDVEAEGVLPIAIGEATKLVQ 61 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYS 127 YL+++ K Y + G +TD+ D G++V+ + ++ + F G+I Q+P YS Sbjct: 62 YLMEATKEYHFTMKFGAKTDSGDVSGKVVQVTSNIPTYDECLSVTKKFIGEIVQVPPSYS 121 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELE--IHCSKGTYIRTIID 185 ALK G + Y AR G +V R + ++ L ++ L CSKGTYIRT+ Sbjct: 122 ALKINGIRAYNLARSGHKVILSPRKVKIFSLKLESYDSINLTATYSTECSKGTYIRTLSQ 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVER-MVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+ L + V+ L R V + + + L L L +M Sbjct: 182 DIALCLQSLSFVVKLARTRVGCFNYKHGSLYLNALNSF------SFAKTIACLKDGIMDT 235 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 S+ P +++ + G V+ LV N + I +G+++D G Sbjct: 236 KCVLSNIPSLSIDDVVARKIYFGQLVQLPRLHNCSLV--WLQYNNQLIAIGKMED-GYFR 292 Query: 305 PRRLV 309 ++ Sbjct: 293 SSKVF 297 >UniRef50_Q9Z5I4 tRNA pseudouridine synthase B n=3 Tax=Mycobacterium RepID=TRUB_MYCLE Length = 320 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 97/311 (31%), Positives = 165/311 (53%), Gaps = 30/311 (9%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP GM+S+D + + +RI+ R GH G LDP+ATG+L + + ATK L + Sbjct: 13 GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72 Query: 73 DKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y RLGQ T T DA+G++++ + E +A A+ RGDI+Q+PS SA+K Sbjct: 73 SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRH---------EGNELELEIHCSKGTYIRT 182 G++ Y R+G V +ARP+ + + + +L++E+ CS GTYIR Sbjct: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + DLG+ G G H+ LRR V ++ +++ +LE L EL + D Sbjct: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD------------ 240 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 ++ +P +L ++ NG P+ ++G +G+ ++ +G+ I + + DEG Sbjct: 241 --ETCLLMFPRRDLTVSEVEATSNGRPISSAGI--DGIYAASDA-DGRVIAL--LRDEGP 293 Query: 303 VAPRRLVVEYP 313 + +VV +P Sbjct: 294 -RTKSVVVLHP 303 >UniRef50_Q7MBB8 tRNA pseudouridine synthase B n=3 Tax=Cyanobacteria RepID=TRUB_GLOVI Length = 292 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 90/304 (29%), Positives = 147/304 (48%), Gaps = 20/304 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L LDKP G++S+D + +++R+ R GH G LDP ATG+LP+ +G AT+ ++L Sbjct: 1 MEGFLNLDKPAGLTSHDCIARLRRVLGERRIGHGGTLDPAATGVLPVAVGRATRLLRFLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K YR R G TDT D +G I+ + ++ L FRG I Q+P YSA+ Sbjct: 61 EG-KVYRATVRFGLSTDTDDLEGNILADAGAADLDLGRVQVHLQAFRGTISQVPPRYSAI 119 Query: 130 KYQGKKLYEYARQGIEV-PREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIID 185 +G++LY+ AR+G+ + R + + L + EL++EI CS GTYIR+I Sbjct: 120 HQEGERLYDLARRGVAIAEIAPRTVEIQALTVLDWYPGHYPELQIEIACSTGTYIRSIAR 179 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DLG LG GA + L R + +E + L + + L+ Sbjct: 180 DLGTALGTGATLARLLRTRSGPFALEASLPLAAVEAGFQAGTVP-----------LIGPR 228 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + V+L + + G V G ++ E E +F+G+ + G + P Sbjct: 229 TALAHLAAVHLEPPLAARWLMGQRV--PGDCEGAFAQIWECETDRFLGVAACEA-GSLQP 285 Query: 306 RRLV 309 ++ Sbjct: 286 LVVL 289 >UniRef50_Q3ABA1 tRNA pseudouridine synthase B n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=TRUB_CARHZ Length = 288 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 144/306 (47%), Gaps = 29/306 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + L KP GM+S+D + V++ + GH G LDP A G+LP+ +G+AT+ +YL Sbjct: 1 MDGFINLLKPPGMTSHDVVAYVRKKLKTGKVGHLGTLDPAAAGVLPVAVGQATRLIEYLE 60 Query: 71 D-SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 + + K Y G T T D +G+I+E++ + +A + L F G+IEQ P + SA Sbjct: 61 NVAMKEYLAEIVFGITTATWDMEGEILEQKDASFLTAGDIEKVLGHFHGEIEQTPPLASA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTII 184 +K GK LY Y RQG +V R + + + + + L I CS+GTYIR+I Sbjct: 121 VKVSGKPLYRYQRQGEKVEPPKRKVFIDSIELLEFLADKPQPAVRLYIRCSRGTYIRSIA 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +++G L GA + +L R + ++ L D L+P Sbjct: 181 NEIGNLLKTGATLKFLLRTRSGPFLLDDSNLLHE-------------------DFTLIPP 221 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTEGENGKFIGMGEIDDEGRV 303 + D+P +NL + KNG V+ G V GE K I G I + Sbjct: 222 EQLFQDFPKINLTREQYLRVKNGGGVKVETKGENFGPVFAYYGE--KIIATGMICGQ-IF 278 Query: 304 APRRLV 309 P ++ Sbjct: 279 RPEKVF 284 >UniRef50_C9LRE6 tRNA pseudouridine synthase B n=1 Tax=Dialister invisus DSM 15470 RepID=C9LRE6_9FIRM Length = 283 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 144/299 (48%), Gaps = 17/299 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVL + KP GM+S D + ++RIY + GH G LDP+A G+LP+ LG + + +Y Sbjct: 1 MDGVLNVLKPAGMTSFDVIACLRRIYGQKKIGHGGTLDPMAAGVLPVFLGRSARLIEYAP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y +G TDT D G+I++ V F G IEQIPS YSA+ Sbjct: 61 IHRKTYEAEFVMGLATDTEDMTGRIIKTGKVCSDISLWERVASKFTGIIEQIPSSYSAIM 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GK+ Y+ AR G +V +R + VY L + + L + CS GTY+R + DLG K Sbjct: 121 VDGKRAYQLARNGKQVILPSRKVEVYHLQIREIQSPYIRLSVTCSAGTYVRALGRDLGNK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 +G + +L R + + + + TLE + + L+ + S+ Sbjct: 181 MGVPLAMSFLLRTKMGVFSIGQAKTLEEIERNPKDC-------------LMTDISLLLSN 227 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 V+L ++ F G +RT+ +E V E +F+G I + G + P+++ Sbjct: 228 LENVSLSEDAAKDFLQGKRLRTALPDME--VTAVFQEE-RFLGTAFI-ENGVLHPKKVF 282 >UniRef50_Q493T5 tRNA pseudouridine synthase B n=2 Tax=Candidatus Blochmannia RepID=TRUB_BLOPB Length = 260 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 126/256 (49%), Positives = 170/256 (66%), Gaps = 1/256 (0%) Query: 1 MSRPR-RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M R + R RDING+LLLDKP+G+SS L K+K+++NA + GHTG LDPLATGMLP+C Sbjct: 1 MKRYKNVRNRDINGILLLDKPKGISSGLFLNKIKKLFNAKKIGHTGTLDPLATGMLPVCF 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 G+ATK ++YLL SDKRY+V A+LG TDT D+DG I+ PV + L L++F G Sbjct: 61 GKATKLAKYLLHSDKRYKVSAQLGVSTDTFDSDGTIISVSPVQSNDYILEQCLESFIGIR 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 QIP M+S+LKY+G LY+YAR+GI PR+ R I +Y L I+ N +EL++HCS GTY Sbjct: 121 NQIPPMFSSLKYRGVPLYKYARKGIYFPRKPRSIHIYNLSLIKKTENIIELDVHCSTGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR+I++D+GE LGCGAHVI LRRL+V +Y M+ L + D+ LD Sbjct: 181 IRSIVNDIGEYLGCGAHVIELRRLSVGQYISSSMINPATLEAIFYNDSFDDVQVFCKLDA 240 Query: 240 LLMPMDSPASDYPVVN 255 L PM+ + ++ Sbjct: 241 FLTPMNMIMLELANIS 256 >UniRef50_B9Y7W5 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7W5_9FIRM Length = 291 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 149/295 (50%), Gaps = 20/295 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ L++KP GM+S D + +V++ GHTG LDP ATG+L + LG A K YL Sbjct: 10 VDGICLINKPAGMTSFDVVYQVRKAAGIKSVGHTGTLDPQATGVLVVLLGRACKALPYLS 69 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG +TDT D G+ +E RP + Q+ A L++F G Q+P M SA+ Sbjct: 70 GKTKEYIAELTLGTKTDTGDIWGKPLETRPAIKLEPGQIKAVLNSFLGVSMQLPPMVSAI 129 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G+KLYEYAR+G+EV RE RP+ + E+ ++ + + CS GTY+RT+ +D+ E Sbjct: 130 KKDGRKLYEYAREGVEVEREKRPVEIIEIELLQVAS-SIRFRVVCSNGTYVRTLCEDIAE 188 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG + L R Y +++ L+ +++ L+ D AS Sbjct: 189 KLGTVGTMSSLIRTRACGYTLDQCQPLDEVKQGH--------------FQLVSIYDGIAS 234 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 YP++ KNG +R E +V V + + M E ++G Sbjct: 235 QYPLIEANPAQIPDIKNGKRLRLD--STEPVVGVV--SENQVLAMMERQEDGIYR 285 >UniRef50_A1WLI1 tRNA pseudouridine synthase B n=103 Tax=cellular organisms RepID=TRUB_VEREI Length = 331 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 126/315 (40%), Positives = 171/315 (54%), Gaps = 19/315 (6%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 SR R + R ++GVLLLDKP +SSN ALQK K + A +AGHTG LDPLATG+LP+C G Sbjct: 5 SRTRVQRRPVHGVLLLDKPLALSSNQALQKAKWLLRAEKAGHTGTLDPLATGVLPLCFGA 64 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF---SAEQLAAALDTFRGD 118 ATKFSQ LD+ K Y IA G T T DA+G +++ V + E+L+A F G Sbjct: 65 ATKFSQLQLDAPKTYEAIALPGVTTSTGDAEGAVLQRCAVDPAQLAPERLSAVQRQFTGP 124 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF----IRHEGNELELEIHC 174 I Q+P M+SALK G+ LY YAR GI + R AR + ++ L +++ + C Sbjct: 125 ISQLPPMHSALKKDGRALYTYARAGIALERAARAVVIHALELSLVQHAPAQTAIKIAVTC 184 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKG YIRT+ +D+G LGCGAH+ LRR +ER ++LE L+ L E Sbjct: 185 SKGCYIRTLAEDIGAALGCGAHLSALRRTDSGGIGIERCISLERLQALPEAERL------ 238 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGM 294 L P S + + V L ++ F +G P R P V V + +G+ Sbjct: 239 ----ACLQPPQSLLTRHLRVTLDSDNAARFLSGLP-RRGAWPDAPAVAVFGADPPALLGV 293 Query: 295 GEIDDEGRVAPRRLV 309 G I G + P RL+ Sbjct: 294 GHIAG-GCLLPDRLL 307 >UniRef50_D1AS76 tRNA pseudouridine synthase B n=1 Tax=Anaplasma centrale str. Israel RepID=D1AS76_ANACI Length = 308 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 20/306 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L +DKP MSS + ++++I+N + GH G LDPLATG+LPI +GEATK QY +D Sbjct: 12 GWLNIDKPLYMSSGGVVGRIRKIFNC-KVGHAGTLDPLATGVLPIAVGEATKTVQYAVDG 70 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + G + T DA+G+++ + SA + AL F GDI+Q+P +SA++ Q Sbjct: 71 LKSYVAAVQWGAQRSTDDAEGEVIGTSSLRPSASSIREALGQFVGDIQQVPPAFSAVRVQ 130 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 190 G + Y AR+G V + + + + + + + I C +G YIR+ DLG Sbjct: 131 GVRAYNLARKGKAVSLAPKSVCIVSVDLLSVDEEKNVANFLIVCRRGVYIRSFARDLGIS 190 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC +V LRR +V + E +TLE L EL A LD +L+P+ Sbjct: 191 LGCLGYVSSLRRKSVGPFLEEDSITLERLEELAS---------ANALDGVLLPISHVMGA 241 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE-------NGKFIGMGEIDDEGRV 303 + + + + G V L GL V + G + + ++ G Sbjct: 242 TLKLCVDAEVAEIVRKGQSVSLQHTSLNGLYAVENYDMCYLSQVGGVPVAICKVV-NGTA 300 Query: 304 APRRLV 309 P R+ Sbjct: 301 RPVRVF 306 >UniRef50_Q8D2X8 tRNA pseudouridine synthase B n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=TRUB_WIGBR Length = 327 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 185/302 (61%), Gaps = 6/302 (1%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 R+ING+LLLDKP G+SSN LQK+K+++ A +AG+ G LDP+A+GMLPI G+ATKFS Y Sbjct: 30 RNINGILLLDKPIGLSSNLILQKIKKLFKAKKAGYIGTLDPIASGMLPIFFGDATKFSDY 89 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 LL+++K Y++ A+LG++T+T D+ G+I+ RP+ + L F+G+I Q P M+S Sbjct: 90 LLNTNKWYKIKAKLGEKTNTLDSFGKIICIRPILNIKKLNIEKILSEFQGEIYQKPPMFS 149 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 +LK+ GK LY+YARQGI +PRE R + V+ + + L I CSKGTY+R+I+DD+ Sbjct: 150 SLKHLGKPLYKYARQGIYIPREKRKVYVHYIKLLSFSKKYFSLTIKCSKGTYVRSIVDDI 209 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 GEKL CGAH++ LRR + Y M+ L + ++ + LD L+P++S Sbjct: 210 GEKLFCGAHIVKLRRTKLFNYKESHMIDSNKLYNIKKK-----FNDLKKLDECLLPIESI 264 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P++ + +NG + L ++ + KF+G+ +I+ GR + Sbjct: 265 FKKLPIIVVNDDIINRLRNGIKLNFWKIKKNNLFKIISKDTKKFVGIIDINKYGRANSIK 324 Query: 308 LV 309 L+ Sbjct: 325 LI 326 >UniRef50_A8SMZ3 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMZ3_9FIRM Length = 298 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 100/304 (32%), Positives = 150/304 (49%), Gaps = 18/304 (5%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 + NG+L + KP+G +S D + V++IY + GH G LDP ATG+LPI +G ATK +Y+ Sbjct: 2 NFNGILNVYKPKGFTSRDVVNIVRKIYKTKKIGHAGTLDPNATGVLPIAIGNATKIVEYI 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RGDIEQIPSMYSA 128 K Y LG TDT D G + + V Q + + I QIP MYSA Sbjct: 62 QSMGKCYVGEMTLGIETDTLDIWGGSLNSKEVYLDKNQFFEVIKEYDNKKISQIPPMYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK GK+LYEYAR GIEV RE R +Y L+ + N++ E++CSKGTYIR++ +D+ Sbjct: 122 LKKNGKRLYEYARLGIEVEREKREAEIYSLIILNFYDNKIRFEVNCSKGTYIRSLFNDIA 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 A++ L R + +E +LE L+ E L LM ++ Sbjct: 182 SDTDNFAYMSSLCRSKYGIFKIENAFSLERLKNFNEN----------QLYNSLMKIEDVF 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE---GRVAP 305 +Y ++ + NG +T EG+ ++ + FIG+GE+ E + Sbjct: 232 -EYERIDFDKKYFKHISNGLR-KTFDIEKEGIFKIYC--DNIFIGIGELVSEESGKLLKM 287 Query: 306 RRLV 309 + Sbjct: 288 INIF 291 >UniRef50_A0LHM2 tRNA pseudouridine synthase B n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=TRUB_SYNFM Length = 306 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 155/298 (52%), Gaps = 21/298 (7%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 R ++ +G+L+LDKP+GM+S+ + +VKR+ +AGH G LDP ATG+L +C+ +AT+F+ Sbjct: 2 REKEPSGLLVLDKPEGMTSSTLVTRVKRLLGLRKAGHCGTLDPFATGVLLVCVNQATRFA 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSM 125 + L K YR ARLG TDT D G +V R V S +L A+ G Q Sbjct: 62 EQLTGQTKVYRFTARLGIETDTLDRTGTVVRTRDDVVPSERELLEAVRLHEGTQVQEVPR 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 Y+A+K QGK+LYE AR+GI+V R + ++ I + E+ LE CSKGTY+R + Sbjct: 122 YAAVKVQGKRLYELARKGIDVELPRREVHIHRFDLISYRYPEVVLETKCSKGTYVRQLAA 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DLG +LGCGAHV++LRRLA + +ER +LE + + L+PM Sbjct: 182 DLGRRLGCGAHVMHLRRLACGPFGLERASSLEQMHDGASDGSWL---------AKLVPMA 232 Query: 246 SPASDYPVVNLPLTSS-VYFKNGNPVRTSGAPLE--------GLVRVTEGENGKFIGM 294 S P + + + G + G VR+ +G+ + Sbjct: 233 DALSHLPALTIEDGQVLSRLRYGQ-LDADWEAEHSGRFSRRVGPVRIVTA-DGRLAAL 288 >UniRef50_A6LLV6 tRNA pseudouridine synthase B n=1 Tax=Thermosipho melanesiensis BI429 RepID=TRUB_THEM4 Length = 304 Score = 279 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 91/303 (30%), Positives = 142/303 (46%), Gaps = 19/303 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L KP+G++S+D + +V+R N R GH G LDP A G+L + +G T+ +YL Sbjct: 1 MMGFLNLYKPKGVTSHDVVDEVRRKLNIRRVGHAGTLDPFAEGVLVVGVGSTTRLLEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 KRY V A LG T+T D G+IVEER E++ + +F G +Q+P YSA K Sbjct: 61 VERKRYYVKALLGVITETFDITGEIVEERECNIPDERIIDVVKSFVGKYKQVPPAYSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 Y+G++LY+ AR+G + + +Y + I + E+ SKGTYIR++ D+G K Sbjct: 121 YKGERLYKLAREGKIISLPPVDVEIYGIDKIIVKKPHFSFEVEVSKGTYIRSLCMDIGYK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA L+RL+V + + + + E L L+ + Sbjct: 181 LGCGATAKELKRLSVGTFDIRDAINPFEV-------------GREKLLESLIDVQKVLP- 226 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPL-----EGLVRVTEGENGKFIGMGEIDDEGRVAP 305 P V + NGN V NG+ + + + + + Sbjct: 227 LPKVEIYKDFVENIYNGNQPTLDFVKEMVDSFSKDDDVMLICNGQLVAIAKAERNSKFLE 286 Query: 306 RRL 308 + L Sbjct: 287 KNL 289 >UniRef50_Q30WI7 tRNA pseudouridine synthase B n=4 Tax=Desulfovibrionaceae RepID=TRUB_DESDG Length = 309 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 89/293 (30%), Positives = 141/293 (48%), Gaps = 20/293 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVL+L+KP+G +S + ++KR + GH G LDP+A G+L + LG+ TK S YL++ Sbjct: 10 HGVLVLNKPKGPTSAHCIARIKR-LGQKKIGHAGTLDPMAQGVLLVLLGQCTKISGYLME 68 Query: 72 SD-KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG+ TDT D +G+ + + E + A+D + G EQ YSA Sbjct: 69 GGEKIYSGTLELGRTTDTWDDEGETLSTADWTHVTEEDVVRAVDLWTGSSEQQVPAYSAA 128 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K++G+ LY+ AR+G E P + R I + + + E + +HCS GTYIR++ LG Sbjct: 129 KHKGQPLYKLAREGKETPVKTRRIEISQAETLAVELPFVRFRVHCSSGTYIRSLAHSLGN 188 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LGCGA + L R + ++ L+ + + L ++P+D Sbjct: 189 RLGCGAVLTELIREYSHPFSLDEAHDLDDV-----------LAEPAELAGRVIPLDKALP 237 Query: 250 DYPVVNLPLTSSVYFKNGNP------VRTSGAPLEGLVRVTEGENGKFIGMGE 296 +P + L KNG P S EG+ V G + + E Sbjct: 238 HWPKLRLSAADEARVKNGMPHPYDPAEMASMPFTEGIRAVLLDPAGDPLALAE 290 >UniRef50_Q04ED7 tRNA pseudouridine synthase B n=1 Tax=Oenococcus oeni PSU-1 RepID=TRUB_OENOB Length = 298 Score = 279 bits (714), Expect = 9e-74, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 159/308 (51%), Gaps = 25/308 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG++L+DKP G++S D + K+++I+ + GHTG LDP TG+L I LG+ATK YL + Sbjct: 3 NGIVLVDKPAGLTSFDVVAKLRKIFQQKQVGHTGTLDPSVTGLLVIVLGKATKLIDYLQE 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQL--AAALDTFRGDIEQIPSMYSAL 129 + K+YR LG +TDT D DGQ+ E + + + AA D+F G +Q+P MYSA+ Sbjct: 63 NQKQYRGTLILGLKTDTQDMDGQVTEMQFLKEAIADFKKKAAFDSFLGSSDQLPPMYSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE-------LEIHCSKGTYIRT 182 K GK LYE AR+G + R++R I V E + + SKGTYIRT Sbjct: 123 KVGGKHLYELARKGETIERKSRKIKVMEFQQVGGSKFDASKGQEYINFVATVSKGTYIRT 182 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 +I+D G KLG A ++ LRR+ Y V+ + LE + ++ ++ Sbjct: 183 LIEDFGAKLGLPATMMRLRRIEADGYDVKNSINLEEILA------------SKTPRKFII 230 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 PM+ P ++ KNG ++ + V++ N F + E D G Sbjct: 231 PMEKLLPTLPKYSVGSDDWQLIKNGGWLKELPISV-SPVKIFY--NNSFQAIYEKQD-GF 286 Query: 303 VAPRRLVV 310 P+++++ Sbjct: 287 YKPKKMLI 294 >UniRef50_D2Q8K5 TruB tRNA pseudouridine synthase B n=6 Tax=Bifidobacterium RepID=D2Q8K5_9BIFI Length = 362 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 99/356 (27%), Positives = 157/356 (44%), Gaps = 54/356 (15%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 + +I+G+L++DKPQG++S+D + ++ + R GH G LDP+ATG+L I G AT+ Sbjct: 4 KKPEISGLLVVDKPQGVTSHDVVAAIRGALHMKRVGHAGTLDPMATGVLVIGFGNATRLL 63 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVE----ERPVTFSAEQLAAAL-DTFRGDIEQ 121 Y++D K Y RLGQRT T DADG+++E S E + + + F G IEQ Sbjct: 64 NYIVDHSKTYLATIRLGQRTATDDADGELLEPSAPIAEAFPSRETVERVIAERFTGRIEQ 123 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELE---------- 171 +P+ YSA+K G++ Y+ AR+G +V +ARP+TV E Sbjct: 124 VPNSYSAIKINGQRAYDLAREGKQVELKARPVTVEEFRVDAVRYGYASTRFADAPLTDAQ 183 Query: 172 --------------------------IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAV 205 + CS GTYIR + DLGE LG G ++ LRR+ + Sbjct: 184 DIGAGERWHPVSAAPDVRPVMELDVAVSCSAGTYIRALGRDLGEALGLGGYLTMLRRIRI 243 Query: 206 SKYPVE--RMVTLEHLRELVEQAEQQDI--------PAAELLDPLLMPMDSPASDYPVVN 255 + +VT + E ++ A L D L +DS + P++ Sbjct: 244 GDFTETMPNIVTAHTESKTFTNREGAEVTRNRAVIDDAEHLTDRALGMVDSAKASMPMLR 303 Query: 256 LPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVE 311 + + + G + + E G + + E G P + V+ Sbjct: 304 ISDQEATDLRFGRRIAHD---IRETTAAYVPETGDLVAIIERAKRGEAKPVAVFVQ 356 >UniRef50_D1BM63 tRNA pseudouridine synthase B n=3 Tax=Veillonella RepID=D1BM63_VEIPT Length = 313 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 90/328 (27%), Positives = 138/328 (42%), Gaps = 43/328 (13%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L KP G++S+DA+ +RI R GH+G LDP+A G+LP+ LG+AT+ +Y Sbjct: 1 MDGILPFLKPPGITSHDAVAICRRILKEKRIGHSGTLDPMAYGVLPVFLGKATRLIEYTE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQI-----------------------VEERPVTFSAEQ 107 D DK Y +LG TDT D+ GQ + V S E+ Sbjct: 61 DFDKTYVAECKLGTFTDTEDSSGQTVLPDTNMVLRDGVVLNQAIQSTEISATMVKPSFEE 120 Query: 108 LAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE 167 L + L F G +Q PS YSA+K G + YEYAR+GI V R I + + I + Sbjct: 121 LVSILKKFAGIQDQRPSKYSAIKVNGIRAYEYARKGIPVELPLRQIHIKNIELIAYGFPF 180 Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 + + C+ GTYIR+++ D+ LG + L R V + + E + Sbjct: 181 FTVRVTCTGGTYIRSLLRDICIALGIPGTMTSLARTQVGPFDIGSAKMAEEIM------- 233 Query: 228 QQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT----SGAPLEGLVRV 283 LL+P D+ S V + G + S + R Sbjct: 234 -------LHGKSLLLPTDAAVSHLSKVTVNSVQLRMMVQGKELPIEREFSFTEPDNFYRA 286 Query: 284 TEGENGKFIGMGEIDDEGRVAPRRLVVE 311 FIG+ + + + +E Sbjct: 287 YGPLG--FIGIMRRTNHSLKVEKNIFIE 312 >UniRef50_Q2G5F3 tRNA pseudouridine synthase B n=8 Tax=Sphingomonadales RepID=TRUB_NOVAD Length = 304 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 146/308 (47%), Gaps = 25/308 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKF 65 ++G ++LDKP + S + VKR + GH G LDPLATG+LPI +GEATK Sbjct: 2 VDGWIILDKPLELGSTQGVAAVKRNLRQAGYGKCKVGHGGTLDPLATGVLPIAVGEATKL 61 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 +LD+ K Y G TD+ D +G IV V + L FR I+Q+P Sbjct: 62 CGRMLDASKVYAFTVAFGTETDSLDLEGGIVATSDVRPPLADVHVTLGAFRDSIDQVPPA 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-----LELEIHCSKGTYI 180 YSAL +G++ Y+ AR G V +R +T++ L G+E L H SKGTYI Sbjct: 122 YSALMVEGRRAYDLARAGETVELPSRRVTIHALTLDSWTGSEGAVETATLTAHVSKGTYI 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R++ D+ LG HV LRRL + +E+ ++L+ L L + A L+ + Sbjct: 182 RSLARDIARALGTVGHVTMLRRLKAGPFAIEQAISLDKLNALGQGAP---------LEHV 232 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKF-IGMGEIDD 299 L+P+++ D P ++L + + G + + G + + E+ D Sbjct: 233 LLPLEAGLVDIPALDLDPEQARAVRQGRVLTGLPFEDG----LYWARLGTVPVALVELSD 288 Query: 300 EGRVAPRR 307 G + R Sbjct: 289 -GNLKVSR 295 >UniRef50_A9BI94 tRNA pseudouridine synthase B n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI94_PETMO Length = 305 Score = 277 bits (708), Expect = 4e-73, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 147/297 (49%), Gaps = 24/297 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G L+++KP+G++S+D + +++ + + GH G LDP ATG+L + + +ATK ++ + Sbjct: 3 SGFLVINKPKGITSHDVINILRKKFGLQKIGHAGTLDPFATGVLVVGVNKATKLLEFFQN 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y V A LG TDT D +G+I E+ V L +F G+ Q+P YSA K Sbjct: 63 EKKTYYVKAELGIITDTFDIEGKIQEKNIVTQQHISNLKDICFSFVGEYLQVPPAYSAKK 122 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 Y+GKKLYEYAR+G + + + +Y+L EG E + S GTYIR++I D+G Sbjct: 123 YKGKKLYEYAREGKIINLPPKKVKIYQLSNFSQEGQEFSFFVEVSSGTYIRSLIMDIGYA 182 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA L R+ K+ ++ + LE + L+ +L ++ D Sbjct: 183 LGCGAVTKELCRVKSGKFELKDSILLEEVS----------------LEKMLKMDEA--LD 224 Query: 251 YPVVNLPLTSS----VYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 P V + N + S V++ + E F+G+G + + Sbjct: 225 LPYVKINNGQLVIKGQQIYKDNVLEFSNFNKNDYVKIYD-EKECFLGIGRAEKKSTF 280 >UniRef50_B1ZX46 tRNA pseudouridine synthase B n=3 Tax=Verrucomicrobia RepID=TRUB_OPITP Length = 241 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 143/245 (58%), Gaps = 14/245 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +PR+ ++GVLL+DKP +S+D + +++R N R GH G LDP+ATG++ + +G Sbjct: 1 MIQPRKE---LDGVLLVDKPTAHTSHDVVARLRRKLNMKRIGHAGTLDPMATGLMILLIG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDI 119 +AT SQYL DK Y LG+ TD+ DADG+++ PV + ++ AA+ F GD Sbjct: 58 KATTISQYLTSLDKEYEGTIELGKVTDSQDADGEVLSTLPVPPFTEAEIRAAMAGFMGDQ 117 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q P MYSA+K G LY+ AR+G EV RE R I V R + + + C+KGTY Sbjct: 118 YQTPPMYSAIKVDGVPLYKTARKGGEVEREPRFIRVSSFELTRFALPQFDFRLRCTKGTY 177 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +RTI DLG++LGCGAH+ LRR A K+ + +TL+ + L ++ Sbjct: 178 VRTIAHDLGQRLGCGAHLAALRRTATDKFKLADALTLDAIEAL----------PLPEIEK 227 Query: 240 LLMPM 244 L+P+ Sbjct: 228 RLIPV 232 >UniRef50_C0QHM4 TruB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHM4_DESAH Length = 302 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 89/296 (30%), Positives = 135/296 (45%), Gaps = 19/296 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L +DKP G+SS + +VKR N +AGHTG LDP ATG++ + T+ S++LL Sbjct: 3 SGILAVDKPGGISSARLVSRVKRCLNVKKAGHTGTLDPFATGLMLCGINSGTRISRFLLG 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVE----ERPVTFSAEQLAAALDTFRGDIEQIPSMYS 127 KRY LG TDT D G + + +Q+ ++TF G Q P +YS Sbjct: 63 GPKRYTATLCLGVETDTLDCTGVKEQPANPTTVAAITPDQIIRVVNTFVGVQMQQPPVYS 122 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 ALK++G+ LY ARQG V + R I ++ + + +++H S GTYIR++ D+ Sbjct: 123 ALKHEGQPLYRLARQGRPVQKPLRQIEIFSASVEAIDLPHVTIKVHSSTGTYIRSLARDI 182 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G LGCGAH++ LRR + V+ V L L + + ++PM Sbjct: 183 GSALGCGAHLVELRRTESCGFSVDNAVPLSDLEAMDKDEPLS----------RIVPMHEV 232 Query: 248 ASDYPVVNLPLTSSVYFKNGN-----PVRTSGAPLEGLVRVTEGENGKFIGMGEID 298 S P + G + L +G + E D Sbjct: 233 LSFMPSFAADMQMVKRVGFGQDIGLEKLMAPPEDPRSLFVQILDPHGALAAVVEYD 288 >UniRef50_B6BVJ8 tRNA pseudouridine synthase B n=1 Tax=beta proteobacterium KB13 RepID=B6BVJ8_9PROT Length = 298 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 154/300 (51%), Gaps = 18/300 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G + + KP+G SSN L K+K + +AGH G LDP ATG++PI GEATKFS +L+ Sbjct: 10 SGYISVIKPKGWSSNQLLSKLKWLLQIKKAGHGGTLDPFATGIVPIFFGEATKFSNRVLE 69 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA--EQLAAALDTFRGDIEQIPSMYSAL 129 S+K Y +LG + T D +G+++++ L L+ F G Q P YSAL Sbjct: 70 SNKEYIAELKLGFESSTGDTEGELLKDDSFNEEKLPSNLENILNEFLGIQRQTPPKYSAL 129 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 KY GK YEYAR GIE+P + R I ++ + + +++ ++ CSKGTYIRT+ +D+ + Sbjct: 130 KYNGKPYYEYARAGIEIPIKTREIEIFSIDLVNFTNHQITFQVSCSKGTYIRTLGEDIAK 189 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 K+G ++ L R+ V K +++ + EL + E LL P+ Sbjct: 190 KIGTKGYLTNLERIRVGKIKKIDSFSVDQIEEL----------SIEERKKLLKPI-YQLL 238 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 + P + L + NG + + G + FIG+G I D + P RL+ Sbjct: 239 ELPKIELNNNDTKNILNGQNLDIA--IEAGEFLLFF--EKTFIGIG-ISDGEMIKPVRLI 293 >UniRef50_Q4JV56 tRNA pseudouridine synthase B n=5 Tax=Corynebacterium RepID=TRUB_CORJK Length = 308 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 97/322 (30%), Positives = 152/322 (47%), Gaps = 30/322 (9%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 R R +GV+L+DKP G +S+D + K++RI R GH+G LDP+ATG+L + + Sbjct: 4 RSARSVLSRSGVVLVDKPSGPTSHDMVAKLRRIMGTRRIGHSGTLDPMATGLLVVGVERG 63 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT----FSAEQLAAALDTFRGD 118 TKF +++ DKRY RLG T T DA G ++ + +Q+ A RGD Sbjct: 64 TKFLAHVVTHDKRYEATVRLGVATHTDDAQGDVLSTASPQDLQALTEQQVREAFAAQRGD 123 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH------EGNELELEI 172 I Q P+ S++K GK+ +E R+G +V RP+T++ L + + + + Sbjct: 124 IMQRPTSVSSIKIDGKRAHELVREGHDVVLPERPVTIFSLEVLDVVVDDATSCIDARISV 183 Query: 173 HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIP 232 HCS GTYIR I D+GE LG G H+ LRR +V + V TLE L E D Sbjct: 184 HCSSGTYIRAIARDVGEALGVGGHLTQLRRTSVGPFDVSEARTLEQLEEDPSLTLNLD-- 241 Query: 233 AAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFI 292 ++ + + + V G ++ G VR +G+ Sbjct: 242 ------------EAMVRCFDTREISESEGVDLSLGKWLKPVG---NKGVRAAVTPSGQ-- 284 Query: 293 GMGEIDDEGRVAPRRLVVEYPA 314 + ++++G+ + V PA Sbjct: 285 AIALVEEKGK-RASSVFVARPA 305 >UniRef50_B1MZH0 tRNA pseudouridine synthase B n=3 Tax=Leuconostoc RepID=B1MZH0_LEUCK Length = 315 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 91/307 (29%), Positives = 145/307 (47%), Gaps = 22/307 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV++++KP+G++S D + KV+R + GH G LDP +G+L + LG+ATK L Sbjct: 20 VDGVIVINKPRGVTSFDVVAKVRRAIGQKKVGHAGTLDPDVSGVLVVALGKATKLIDELQ 79 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQIPSMYSA 128 KRY LG T+T D G+I+ E+ V +S +Q+ A+ + G I+Q+P MYSA Sbjct: 80 SRPKRYVGDITLGFATETEDLSGEIISEKEITVPYSDQQIDEAIQSLNGSIKQVPPMYSA 139 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELL-----FIRHEGNELELEIHCSKGTYIRTI 183 +K GK+LYEYAR V R R +Y+ H+ + + E SKGTYIRT+ Sbjct: 140 VKVAGKRLYEYARAVETVTRPIREAHIYDFHRTSLVDYAHQQQKFDFEATVSKGTYIRTL 199 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D G +LG A + L R+ S + + + L + A + ++P Sbjct: 200 AVDTGRQLGMPATMTRLERVMGSGMTLSQAIELNDVMTWPRTA----------ILEKVIP 249 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-GR 302 + ++P+ L KNG + A L + E + + G Sbjct: 250 ISK-LLNWPIKPLTDDEWFAVKNGQVITQWPADDNYLQLTYQDE---VKAVYAYNQNTGE 305 Query: 303 VAPRRLV 309 R + Sbjct: 306 WRSRYVF 312 >UniRef50_C0W0C7 Possible tRNA-pseudouridine synthase I n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0C7_9ACTO Length = 339 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 97/330 (29%), Positives = 157/330 (47%), Gaps = 30/330 (9%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 PR +G+++++KP G++S+D + +R+ + GH G LDP+ATGML I +G+AT Sbjct: 21 PRAETTAADGLIIINKPAGVTSHDVVSASRRLSATRKVGHAGTLDPMATGMLIIGVGKAT 80 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA-----EQLAAALDTFRGD 118 + Y+ +DK Y +LG TD+ DADG+I + + +++ A + F GD Sbjct: 81 RLLHYITGADKGYLARIQLGVSTDSDDADGEITAVNSIPGTRLFGLTKEIDAQMRYFVGD 140 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYE-------------LLFIRHEG 165 I Q P+ SA+K GK+ + R G E+ ARP+ V + L + Sbjct: 141 IMQRPTTVSAIKVNGKRAHALHRAGEEIELAARPVHVAKFARMSEVEFVEVTLDDEPYTF 200 Query: 166 NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 E ++ + CS GTY+R + DLG LG GAH+ +L R V + +M L + V + Sbjct: 201 AEFDVVVECSSGTYVRALARDLGAALGLGAHLTHLHRYRVGSWTASQMRELTDISAEVAE 260 Query: 226 AEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTE 285 Q + + D+ +Y + L ++ NGN R + + + V Sbjct: 261 NGQVQVISLT---------DACLQEYDGLELNEVQAIALCNGNTTRLTADATKSPI-VAA 310 Query: 286 GENGKFIGMGEIDDEGRVAPRRLV-VEYPA 314 NG+ G+ E D G P + E PA Sbjct: 311 LYNGQVRGLLERDGNG-YRPLVIFETEMPA 339 >UniRef50_B0S1E2 tRNA pseudouridine 5S synthase n=2 Tax=Finegoldia magna RepID=B0S1E2_FINM2 Length = 287 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 87/300 (29%), Positives = 151/300 (50%), Gaps = 18/300 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++ V+ + K +G +S D + K I + GH G LDP ATG+L + +G+ TK ++YL+ Sbjct: 1 MDCVINVFKEKGYTSQDVVSICKGILKTKKIGHAGTLDPDATGVLLLGVGKGTKITEYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRG-DIEQIPSMYSAL 129 + K Y G TDT D G + T+ E+L LD G IEQ+P MYSA+ Sbjct: 61 EHGKTYIFEMCFGTSTDTLDLSGNVTGFSEKTYDKEKLKKILDDLNGKTIEQVPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYEYAR+ E+ R++R IT++ + + N +++ CSKGTYIR +I+D+ + Sbjct: 121 KVNGKKLYEYARENKEIKRKSRKITIFNIEPLYILENSCIIKVRCSKGTYIRVLIEDIAK 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL A++ L R+ + ++ V ++ LR+ ++ + + + Sbjct: 181 KLDKLAYMKSLIRVNSGGFDIKDSVKIDSLRKCN-------------IEDVSFSVYESLT 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 + + L + NG + ++ + + +FIG+G I+D + ++ Sbjct: 228 EMKSIELDESLYKKITNGVKINIVHDNIDNIKVIC---KDRFIGIGSIEDH-ILKMNKVF 283 >UniRef50_Q46JB9 tRNA pseudouridine synthase B n=2 Tax=Prochlorococcus marinus RepID=TRUB_PROMT Length = 314 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 80/315 (25%), Positives = 155/315 (49%), Gaps = 28/315 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G +++DKP G++S+D + ++++++ + GH+G LDP TG+LPI +G+AT+ YL S Sbjct: 6 GFVVIDKPSGLTSHDCVNRLRKVFGIKKIGHSGTLDPAVTGVLPIAIGDATRLISYLQGS 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR I +LG T+T D G+I+E + + + L+ FRG+I Q P ++S++ Sbjct: 66 -KAYRGIIQLGATTNTDDMQGEIIESKAWPLITQNYINYLLENFRGEILQKPPIFSSVHI 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLGE 189 +G++ Y+ AR+G + + +T+ +L I + EL +++ CS GTYIR++ D+G+ Sbjct: 125 KGERAYKKARKGEKFDLIPKKVTINKLNLISWSQDKGELLVDVDCSTGTYIRSLARDIGD 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 K+GCG ++ LRR + V L + + ++ + + L + Sbjct: 185 KIGCGGYLKSLRRTKAYNFIENHSVKLPEKSDFYPEGDKPKVLNPNIFFKHLSSFEL--- 241 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVR---------------VTEGENGKFIGM 294 + + +++G + V + + K +G+ Sbjct: 242 ------ISEEEIISWRSGRKISFQNNVKRLKVTKNNEVEDSFIHNNHILVLNKENKILGI 295 Query: 295 GEIDDEGRVAPRRLV 309 +DD + P+ + Sbjct: 296 ACLDDSFAIKPKVVF 310 >UniRef50_A7BD72 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD72_9ACTO Length = 355 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 160/353 (45%), Gaps = 47/353 (13%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R R G+L++DKPQG++S+D + +V+R+ + GH G LDP+ATG+L I +G Sbjct: 6 MARRPDNPRP--GLLVIDKPQGLTSHDVVSRVRRLARTRKVGHGGTLDPMATGVLVIGIG 63 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDI 119 +ATK ++ K YR R G T+T DA+G + S EQL AAL RGDI Sbjct: 64 KATKLLTWVSGHSKEYRATIRFGVATNTDDAEGVATAAVGCASLSEEQLEAALAPQRGDI 123 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELEL--------- 170 Q+PS SA+K GK+ Y AR G +V ARP+ + L + + Sbjct: 124 MQVPSTVSAIKVNGKRAYALARAGEDVELAARPVRISRLEVLAPPRPAWCILDEPDPETA 183 Query: 171 -----------------EIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERM 213 + CS GTY+R + D GE LG GAH+ LRR V P+E Sbjct: 184 PDGAVAPGSVRVVDVDVVVECSSGTYVRALARDAGEALGVGAHLTALRRTRVGDVPLEAA 243 Query: 214 VTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT- 272 +TL+ L VE A + AE + PL+ ++ + +P + + + F +G R Sbjct: 244 MTLDELSAAVEAASAEGESDAEPVLPLVPLGEAARTMFPSLLMTEAEAGAFAHGQAPRRS 303 Query: 273 ----------------SGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 S E +G +G+ ID R+ + Sbjct: 304 RSELAQWAVEAGYCPKSAPEEEPAPIAAVAPDGTVLGLLRIDA-ARLRTVLVF 355 >UniRef50_Q8CWM3 tRNA pseudouridine synthase B n=6 Tax=Cyanobacteria RepID=TRUB_THEEB Length = 287 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 144/306 (47%), Gaps = 24/306 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L+KP G +S+D + +++R R GH G LDP+ATG+LPI LG AT+ YL Sbjct: 1 MFGFLNLNKPAGCTSHDCINELRRRLRLKRIGHGGTLDPMATGVLPIALGAATRLLPYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D K Y R G T T D G+I +E+ + + L F G+IEQ+P YSA+ Sbjct: 61 D-RKAYIGTVRFGMSTTTDDITGEICQEQGASHLTLAAIQEQLPQFIGEIEQLPPAYSAI 119 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---NELELEIHCSKGTYIRTIIDD 186 + G++LY AR G V R +TVY + + + EL L I C GTYIR + D Sbjct: 120 QVAGQRLYARARAGEVVSVPPRIVTVYRIEVLHWQPGRYPELTLHITCGSGTYIRALARD 179 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG LG G + L+R+ +E +LE + A E L L Sbjct: 180 LGTALGVGGTLAALQRIESGGLRIEESHSLESI-------------APEHLP--LCSPQE 224 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSG-APLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 S P + L + +G V G P + V VT +G+G I R+ P Sbjct: 225 VLSHLPWLELNAAQLNDWYHGRAVICEGLPPADSCVGVTFAT--ACVGVG-ISGGDRLHP 281 Query: 306 RRLVVE 311 + ++ E Sbjct: 282 KVVLKE 287 >UniRef50_C7R3E1 tRNA pseudouridine synthase B n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3E1_JONDD Length = 333 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 85/319 (26%), Positives = 147/319 (46%), Gaps = 25/319 (7%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 R RR +G++++DKP GM+S+D + ++R+ + GH G LDP+ATG+L + +G Sbjct: 22 PRQPRRPTAADGIIVVDKPTGMTSHDVVAIMRRLAGTRKVGHAGTLDPMATGLLVVGVGR 81 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIE 120 T+ +L +DK Y RLG T + DADG + + +P + EQL AA G I+ Sbjct: 82 GTRLLHFLTAADKSYTATVRLGVATVSEDADGDVTDTQPCDHVTREQLQAAAARLTGVID 141 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR---------HEGNELELE 171 Q+PS SA+K G++ Y+ R G +V AR +TV + ++ L Sbjct: 142 QVPSAVSAVKIDGRRAYDRVRAGEDVVLPARSVTVSRFDIVDVVDGPPHHGVATKDVLLS 201 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDI 231 + S GTY+R + DL + +G H++ LRR V+++ + ++ L++ + Sbjct: 202 VDVSSGTYVRALGRDLAQIVGTVGHLVALRRTRVAEWTLAEARSVPQLQDTDPTVPLDVM 261 Query: 232 PAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKF 291 + L V + + +G + T L G E G+ Sbjct: 262 DLGSAAERALR----------VWRVSEAQAGRLAHGQRLTTE---LSGQYAAV-SEAGEL 307 Query: 292 IGMGEIDDEGRVAPRRLVV 310 + + + +G P + V Sbjct: 308 VAVVQC-GQGVARPVTVFV 325 >UniRef50_D2R9Q7 tRNA pseudouridine synthase B n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9Q7_GARVA Length = 367 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 153/348 (43%), Gaps = 50/348 (14%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+LL+DKPQG++S+D + + + + R GH G LDP+ATG+L I G AT+ Y+L Sbjct: 6 SGLLLVDKPQGVTSHDIVACARHLLHTKRVGHAGTLDPMATGLLIIGFGNATRLLNYMLG 65 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEER-----------------PVTFSAEQLAAALDT 114 +K Y + RLG+ T T DA+G+I+ + + S E++ + Sbjct: 66 HNKTYEAVIRLGEATTTDDAEGEILPDDALNIGPGVHVANKDMSFEKSLSFERIKQVVSE 125 Query: 115 -FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--------- 164 G I Q P+ +SA+K G++ Y+ AR+G V R I V + Sbjct: 126 NLVGKIMQAPTAFSAIKINGQRAYDLAREGKSVEIAPREIFVSDFSVSNPRITRGVSGKL 185 Query: 165 GNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 ++ ++ CS GTYIR + DLG LG G H+ LRR +V + V L+ ++ E Sbjct: 186 VCDISAKVSCSSGTYIRALARDLGRLLGVGGHLTQLRRTSVGDFSVTDSRVLKLRSQMRE 245 Query: 225 --------QAEQQDIPAAELLDPLLMP------MDSPASDYPVVNLPLTSSVYFKNGNPV 270 Q + +P+ + ++P MD+ + P +++ + + G + Sbjct: 246 FTDRNGVLQHRSKAVPSDDFDANNMLPKICLNMMDAASHSLPTLSIDENQAKDLRFGRWI 305 Query: 271 RT------SGAPLEGLVRVTEGENGKFIGMGEIDDE---GRVAPRRLV 309 P V E + + E+ ++ P + Sbjct: 306 ELKSGINYENYPAIAYVPNANTEECDVVAVVELTKNIKSNQIKPIVVF 353 >UniRef50_C0GUB0 tRNA pseudouridine synthase B n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUB0_9DELT Length = 309 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 91/298 (30%), Positives = 147/298 (49%), Gaps = 18/298 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GV++L+KP+G +S L K+K + + GH G LDP+A G+L LG+ATK + Y+ + Sbjct: 14 DGVMVLNKPEGPTSTACLNKIKSRFKLKKLGHAGTLDPMARGVLVALLGQATKLAPYITE 73 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y + RLG TDT D G ++EE+ S E + + ++ EQ SA K Sbjct: 74 GRKTYWGVIRLGVSTDTYDMQGTVLEEKDCSEVSPETIEREIKSWEDLKEQPVPAVSAAK 133 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +QGK Y AR G EVP + + I +Y+ + E +E I CS GTY+R++ LG + Sbjct: 134 HQGKPFYALARAGQEVPCKTKEIDIYQAQVLNIEPPLVEFRITCSAGTYVRSLAHSLGMR 193 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 +GC A + L R + +++ V L+ L E + L+ L+P+ S Sbjct: 194 VGCCAALAELVREKSHPFSLDQAVDLDTLMEARD------------LNEHLLPIPRAMSH 241 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAP----LEGLVRVTEGENGKFIGMGEIDD-EGRV 303 + V L + +NG P+ AP + + +G + + E +GR+ Sbjct: 242 WEHVRLDPEQEAFVRNGRPIEARNAPRTVDGQHPRALLLSMDGSSLALAEARKTDGRL 299 >UniRef50_D1N2Y9 tRNA pseudouridine synthase B n=2 Tax=Lentisphaerae RepID=D1N2Y9_9BACT Length = 254 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 128/220 (58%), Gaps = 1/220 (0%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 +GVLL+DKP+ +S D + V+ +N + GH G LDP ATG+L + LG+ T+ S Sbjct: 11 PPFQTSGVLLVDKPKEWTSFDVVNFVRARFNVPKVGHCGTLDPAATGLLVLVLGKFTQLS 70 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSM 125 DK Y +LG TD+ D DG + E + + EQL A L F G+ Q P M Sbjct: 71 SKFSGEDKIYEATLQLGLETDSCDLDGTVTAEHDWSGVTEEQLRATLAGFVGEQMQTPPM 130 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 SA+K GKKLYE ARQG+EV RE++PIT++ L R E + +HCSKGTY+RT+ Sbjct: 131 VSAVKKDGKKLYELARQGVEVERESKPITIFSLDVTRCELPFCDFTLHCSKGTYVRTLCS 190 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 D G+KLGCG + LRR ++ + VT++ L+ + Sbjct: 191 DAGKKLGCGGTLAALRRTRSGQFSLADAVTVDTLKTFEQA 230 >UniRef50_P59880 tRNA pseudouridine synthase B n=2 Tax=Prochlorococcus marinus RepID=TRUB_PROMA Length = 313 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 86/315 (27%), Positives = 154/315 (48%), Gaps = 30/315 (9%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L+++KP G++S+D + +++RIY R GH G LDP TG+LPI +G+AT+ +L S Sbjct: 7 GFLVINKPAGLTSHDCVNRLRRIYGIKRIGHGGTLDPAVTGVLPIAIGKATRLLSFLP-S 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ-LAAALDTFRGDIEQIPSMYSALKY 131 K Y +LG T+T D G+ + E E + L+ F+G+I+Q P ++S++ Sbjct: 66 PKTYEGTIKLGISTNTDDLTGETISEHSWDQVKENSILNCLNKFQGEIKQCPPIFSSVHI 125 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGE 189 G++ Y+ AR+G + I +Y + I + ++LE+HCS GTYIR++ D+G+ Sbjct: 126 NGERAYKKARRGEFFELPPKLIKIYRIKLINWNKKDGTIDLEVHCSPGTYIRSLARDIGK 185 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCG + L R + +++ + L L +L P+++ S Sbjct: 186 KLGCGGALAKLNRTMALGFNIDQAIELPDLD-----------KNNDLNKPMIIDPLKALS 234 Query: 250 DYPVVNL-PLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE-------------NGKFIGMG 295 P + L + ++ G + S + L+ + + E + IG+ Sbjct: 235 HLPSIKLMTIDELSSWRKGKHLILSKSRLKNPLYLIEDDKDIPKTFLTVINNENHLIGLA 294 Query: 296 EIDDEG-RVAPRRLV 309 E ++ P+ + Sbjct: 295 RWHHEPFKIEPKIVF 309 >UniRef50_Q2J732 tRNA pseudouridine synthase B n=1 Tax=Frankia sp. CcI3 RepID=Q2J732_FRASC Length = 327 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 95/311 (30%), Positives = 151/311 (48%), Gaps = 27/311 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++++DKP G +S+D + + +RI R GH G LDP+ATG+L + G T+ +L Sbjct: 33 VDGLVVVDKPAGWTSHDVVARARRILGQRRIGHAGTLDPMATGVLVLGAGRGTRLLGHLA 92 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +DK Y RLG+ T T DA+G VE+RPV A++L A+ G ++Q+P+ SA+K Sbjct: 93 LTDKVYDATIRLGRTTTTDDAEGAPVEDRPVDVDADRLTRAMAALTGVLDQVPASVSAVK 152 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFI----------RHEGNELELEIHCSKGTYI 180 G + Y R G V R +TV+ + G +LE+ + CS GTY+ Sbjct: 153 VGGVRAYARVRAGEVVDLAPRRVTVHRFDLLARRAAGDGAVDPAGTDLEVTVGCSSGTYV 212 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + DLG L CGAH+ LRR AV + + VTL+ EL +A Sbjct: 213 RALARDLGAALDCGAHLTALRRTAVGPFDLAGAVTLDTFAELGPRAVTSLT--------- 263 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 D+ A+ + ++ ++ +G + G P G V G +G + + E + Sbjct: 264 ----DAVAAGFLRRDVTAEAAADVSHGRRLPPVGRP--GTYGVF-GPDGTVLALVEETEH 316 Query: 301 GRVAPRRLVVE 311 V + Sbjct: 317 A-VRSLVVFAP 326 >UniRef50_B3DZL5 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZL5_METI4 Length = 237 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 134/222 (60%), Gaps = 1/222 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 DI+GVLL+DKP+G +S+D + V++ + + GH G LDPLATG+L + LG+ATK L Sbjct: 2 DIDGVLLVDKPKGFTSHDVVDFVRKKFKIKKVGHCGTLDPLATGLLVLVLGKATKIQDLL 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 + DKRY + RLGQ T T D+DGQ+VEE+PV S E++ D + GD Q+P M SA Sbjct: 62 MSEDKRYEGVLRLGQSTLTQDSDGQLVEEKPVPPLSLEEIKKVFDRYVGDFYQVPPMISA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K G LY+ AR+G E+ R+ R + VY + + + E+ C KG Y+RT D+G Sbjct: 122 IKSHGVPLYKLAREGKEIERKPRLVHVYSYEIKKWDSPFIHFEVVCGKGFYVRTYCHDIG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD 230 + LGCG H+ L RL + + + ++ + L L E + Sbjct: 182 QDLGCGGHLFSLVRLQSGNFKLNQALSFDFLNSLKSPEELLN 223 >UniRef50_C7NH20 tRNA pseudouridine 55 synthase n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NH20_KYTSD Length = 348 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 100/351 (28%), Positives = 152/351 (43%), Gaps = 48/351 (13%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSRP +G+L+LDKP G +S+D + + + + + GH G LDPLATG+L + +G Sbjct: 1 MSRPAPAP---DGLLVLDKPSGPTSHDIVSRCRWLCATRKVGHAGTLDPLATGVLLVGVG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF------SAEQLAAALDT 114 AT+ +L+ +DK YR RLG+ T T DA G+ + V + L A + Sbjct: 58 RATRLLTHLVGADKTYRATVRLGEGTTTEDAQGKFTQTTGVPDRDALLADPQPLRDACNA 117 Query: 115 FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-------- 166 G++ Q+PS SALK GK+ + R G E EARP+TV+ + + Sbjct: 118 LSGELMQVPSTVSALKVGGKRAHARVRDGEEFELEARPVTVHAFELLDVQPAQGASGTEV 177 Query: 167 -ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 +L++ + S GTY+R + DLG LG AH+ LRR AV + + ++ L E E Sbjct: 178 LDLDVRVRVSSGTYVRALARDLGGSLGTAAHLTALRRQAVGGFTLASATPVDELVEAREG 237 Query: 226 AEQQDIPAAELLDPLLMPM-DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV--- 281 ++PM + PV L + +NG V P V Sbjct: 238 GALPASMP-------VLPMGEVARRVLPVAQLDEELTGRVRNGQQVTLPEPPAWARVDAA 290 Query: 282 ----------------RVTEGENGKFIGMGEIDDEGRVAPRRLV--VEYPA 314 G +G + + E + R P + PA Sbjct: 291 GRVLSGPRPPLSADGRAALLGPDGDLVAVVEPSGQ-RWKPVTVFPPATPPA 340 >UniRef50_C7LXY6 tRNA pseudouridine synthase B n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LXY6_ACIFD Length = 298 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 98/311 (31%), Positives = 150/311 (48%), Gaps = 30/311 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I G+ L+DKP G +S+D + + +R + R GH G LDP+A+G+L + + AT+ +YL Sbjct: 2 IQGIYLVDKPSGPTSHDVVARARRAFGTRRVGHAGTLDPMASGLLVLGVDRATRLLRYLE 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 KRYR +A LG TDT D DG +V+ RPV + E + A F +Q+P YSAL Sbjct: 62 AQTKRYRAVALLGVATDTDDLDGVVVDRRPVEEPTREAVVTACRRFVPGYDQVPPAYSAL 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---------ELELEIHCSKGTYI 180 G++ Y AR+G +V R + + E+ + +EL + C GTY+ Sbjct: 122 HLDGERAYVRARRGEDVTLPRRRVRIDEIEVGAIWRDGGPGEPQGVRVELTVTCGPGTYL 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R+++ DLGE LG A + LRR V + V + V LE L Sbjct: 182 RSLVRDLGEALGTPATLASLRRERVGRLEVAQAVGLEDLERATP---------------- 225 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 +P+ + V L + F +G + EG V V G G ++G+ D Sbjct: 226 -VPLPLALAGLGRVELDGVDATRFLHGQRIEAPSGLDEGDVLV--GAEGSWLGVASCDGH 282 Query: 301 GRVAPRRLVVE 311 +APR ++V+ Sbjct: 283 -VLAPRVVLVD 292 >UniRef50_C1ZEI4 tRNA pseudouridine 55 synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEI4_PLALI Length = 313 Score = 269 bits (689), Expect = 8e-71, Method: Composition-based stats. Identities = 87/306 (28%), Positives = 144/306 (47%), Gaps = 21/306 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L + KP M+S D + K++R + GH G LDPLA G+L I +G AT+ ++++ Sbjct: 4 GFLNIHKPLRMTSRDVVSKIERAVRPLKVGHAGTLDPLAEGVLVIGIGPATRLTEHVQAL 63 Query: 73 DKRYRVIARLGQRTDTSDADGQI-VEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y LGQ T+T DA+GQ+ + + E + L F G I+QIP +SA+ Sbjct: 64 PKGYSATFHLGQTTETDDAEGQLSTQVDTQHLTRELIEQELTHFCGQIQQIPPRFSAVHV 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GK+ Y+ AR G + + + V++L ++ ++EL+I C GTYIR++ DLGEKL Sbjct: 124 AGKRAYDLARSGQDFELTPKTVEVHQLALTKYANPDIELQIECGSGTYIRSLARDLGEKL 183 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 CGA++ L R + + ++ + L+ L A+ L PLL+ ++ Sbjct: 184 QCGAYMSALTRTHIGPFHLDSALRLDSLPNGFSLAD---------LQPLLLHPMLAFTES 234 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGA----------PLEGLVRVTEGENGKFIGMGEIDDE- 300 + V ++G + P E+ + I + E + Sbjct: 235 QRWVATRQAVVDLQHGKNISGDALQALHSTAESQPEIPAHVCILNEDREVIAVAEFCPQT 294 Query: 301 GRVAPR 306 + PR Sbjct: 295 KLLRPR 300 >UniRef50_C2BRN4 Possible tRNA-pseudouridine synthase I n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BRN4_9ACTO Length = 368 Score = 269 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 93/321 (28%), Positives = 155/321 (48%), Gaps = 31/321 (9%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP+G+SSN +++R+ + G+ G LDPLATG+L +G+AT+ QYL Sbjct: 38 GLVIVDKPRGLSSNAVASRIRRLAGQKKVGYAGTLDPLATGILICAIGKATRLLQYLTAH 97 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 DK Y R G TDT DA GQ++ S ++ AAL+ +RG ++QIP+ +SA+K Sbjct: 98 DKVYTARVRFGISTDTDDALGQVLSRAGAALSTAEITAALEPWRGAVDQIPAKFSAIKIG 157 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIR---------------HEGNELELEIHCSKG 177 GK+ Y+ AR G V + RP+T++ L + + ++ + CS G Sbjct: 158 GKRAYDLARAGKNVEIQPRPVTIHRLELRGAPVLETVAGDDSNPPVQVTDADIVVGCSAG 217 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TY+R++ DLG LG GAH+ LRR++V Y +++ +L + + + L Sbjct: 218 TYVRSLARDLGADLGVGAHLTALRRISVGSYGLDQAHSLSEFE---TEVRRYGVLRPLGL 274 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT-------SGAPLEGLVRVTEGENGK 290 D ++ + ++P T G PLE +G Sbjct: 275 DAAILGI---FPEFPG---DETQVRALSFGQAPALRDSTHAAPNIPLETANSCPNASDGA 328 Query: 291 FIGMGEIDDEGRVAPRRLVVE 311 + + E E + +R+V Sbjct: 329 LVAVTEPVTETKAGDKRVVAL 349 >UniRef50_C7MBA9 tRNA pseudouridine synthase B n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MBA9_BRAFD Length = 318 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 101/322 (31%), Positives = 155/322 (48%), Gaps = 31/322 (9%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 + P G +GVLL+DK G +S+D + +V+ + + GH G LDP+ATG+L + +G+ Sbjct: 8 AAPSAPGSAPHGVLLVDKAAGRTSHDVVARVRWLLGTKKVGHAGTLDPMATGLLVLGVGQ 67 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDI 119 T+ YL+ DK Y RLG+ T T D +G+ + E +A +++ L + RGDI Sbjct: 68 GTRLLTYLVGLDKTYEATIRLGRSTTTDDREGEPLGEIVDASGLTAAEISPHLASLRGDI 127 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELL----FIRHEGNELELEIHCS 175 Q+PS SA+K GK+ Y AR G +V ARP+TV E +L+ I CS Sbjct: 128 AQVPSTVSAIKIDGKRAYARARAGEDVQLAARPVTVSRFEAGEARTEGEFLDLDAVIDCS 187 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 GTY+R + DLG LG G H+ LRR AV + V+ + +PA Sbjct: 188 SGTYVRALARDLGAALGMGGHLTALRRTAVGPFSVQDALR---------------VPARG 232 Query: 236 LLDPLLMPMD----SPASDYPVVNLPLTSSVYFKNGNPVRTSGA----PLEGLVRVTEGE 287 D + +P+ A PV+ + + G +R+ A +G V + Sbjct: 233 EGDDVDLPLQGLGAVAARVLPVLEVDAAQAAALGTGQRLRSDAAGDCDEADGPVAALDA- 291 Query: 288 NGKFIGMGEIDDEGRVAPRRLV 309 G+ I + E + G P +V Sbjct: 292 AGRLIAILEREGAG-WRPVLVV 312 >UniRef50_Q72ER4 tRNA pseudouridine synthase B n=10 Tax=Desulfovibrionales RepID=TRUB_DESVH Length = 304 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 88/293 (30%), Positives = 141/293 (48%), Gaps = 20/293 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL- 70 +G+L+LDKP G SS + KVKR + GH G LDP+A G+L + LG ATK S +L+ Sbjct: 6 HGLLVLDKPSGPSSAQCISKVKR-LGQKKIGHAGTLDPMAGGVLLVLLGHATKISGHLMA 64 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 D +K Y RLG+ TDT DA+G + P + + A +D++ G EQ YSA Sbjct: 65 DGEKVYAGTLRLGETTDTWDAEGTVTATAPWHHVTEADVRAIVDSWLGSSEQEVPPYSAA 124 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K+QG+ LY+ +R G E P + + + + + + + + CS GTYIR++ LG Sbjct: 125 KHQGQPLYKLSRAGRETPVKTKTVEISLAEVVWCDLPHVRFRVRCSSGTYIRSLAHSLGI 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LGCGA + L R + ++ TL+ + + L ++P+ Sbjct: 185 RLGCGAVLTELTREYSHPFGLDMAHTLDAV-----------LAEPGRLAERVIPITHALP 233 Query: 250 DYPVVNLPLTSSVYFKNGNPVR------TSGAPLEGLVRVTEGENGKFIGMGE 296 +P V + L +NG P+ +EG+ + + + E Sbjct: 234 HWPKVGISLQQEASVRNGIPLPYQPEMVADMPFMEGVKAILLDTREVPVALVE 286 >UniRef50_D1IN94 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IN94_VITVI Length = 502 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 121/216 (56%), Gaps = 3/216 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+L++KP+G +S K++R+ + GH G LDP+ATG+L +C+G+ATK + Sbjct: 285 VVLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMATGLLIVCVGKATKLVESYQGMV 344 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y I RLG+ T T DAD +++ P E + +F G+I Q+P M+SA+K Sbjct: 345 KGYSGIFRLGEATSTWDADSPVIQREPWEHIKDENIKKTAASFCGEIWQVPPMFSAIKVG 404 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+K+YE AR+G V R I++++ R + L + CSKGTYIR++ D G+ Sbjct: 405 GEKMYEKARRGESVELSPRRISIFKFDIERSLDDRQNLVFRVTCSKGTYIRSLCADFGKA 464 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 LG AH+ LRR ++ Y + + L E + + Sbjct: 465 LGSCAHLAALRRDSIGPYSADDAWEFKDLEEAITKG 500 >UniRef50_D0MI93 tRNA pseudouridine synthase B n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI93_RHOM4 Length = 249 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 133/233 (57%), Gaps = 1/233 (0%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 PR R VLL+DKP+G++S D +++++++ + GH G LDP+ATG+L +G AT Sbjct: 17 PRLPERWDAAVLLIDKPKGITSFDVIRRLRKLLRVRKIGHAGTLDPMATGLLICLIGRAT 76 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQI 122 ++ + + +K Y + RLG+ T + DA+ ++VE R + L F G+I Q Sbjct: 77 RWMTHFMAQEKEYEGVMRLGEITPSYDAETEVVERRSWEHLTDADLERVRHQFVGEIVQQ 136 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 YSA+K +GK+LYE AR G V R +R + +Y + +G ++ + CSKGTYIR+ Sbjct: 137 VPAYSAVKVKGKRLYEQARAGKAVERPSRRVQIYAFELLGRDGADVAFRVRCSKGTYIRS 196 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 ++ D G+ LGCGAH++ LRR Y VE+ TLE L E ++ Sbjct: 197 LVHDFGQALGCGAHLVELRRTRSGPYRVEQAWTLEALAEALQARTSSQPERKS 249 >UniRef50_C4LJ77 tRNA pseudouridine synthase B n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJ77_CORK4 Length = 351 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 153/350 (43%), Gaps = 53/350 (15%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++++DKP GM+S+D + ++R+ + GH G LDP ATG+L + + TKF +L+ Sbjct: 5 SGIVIVDKPAGMTSHDVVSAMRRLMRTRKVGHAGTLDPAATGVLILGIERGTKFMTHLVA 64 Query: 72 SDKRYRVIARLGQRTDTSDADGQIV------EERPVTF-------------------SAE 106 + K Y RLG T T DA+G+ + EE + E Sbjct: 65 NTKSYDATIRLGFATTTDDAEGEPIPYPDDSEENSIQAAARPLISPSTRERLSLLLSKPE 124 Query: 107 QLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG- 165 ++ A + GDI Q PS SA+K G++ Y+ R G EV RP+TV Sbjct: 125 RIDRAREQLTGDIMQRPSSVSAIKVDGRRAYDRVRSGEEVSLPPRPVTVSTFDIRDMRTA 184 Query: 166 ----------------NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYP 209 +L++ + CS GTYIR + DLGE LG G H+ LRR V + Sbjct: 185 TIDSGDNNDGDEDVTVIDLDVTVDCSSGTYIRALARDLGEILGVGGHLTALRRTRVGSFS 244 Query: 210 VERMVTLEHLRE----LVEQAEQQDIPAAELLDPLLMPMDSPA-SDYPVVNLPLTSSVYF 264 ++ TL+ LR+ ++ + + L +D +P+ +L + Sbjct: 245 LDDAKTLDQLRDEQSLAEQRIRDEQLTGETPRASLSYSLDQAITRSFPIRHLRDDEATAV 304 Query: 265 KNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA 314 G + S V G + + + +EG++A + + V PA Sbjct: 305 SMGKRIPASDLKD-----VYAGVSADGHAIALMKNEGKIA-KTVFVARPA 348 >UniRef50_B6AR13 tRNA pseudouridine synthase B n=2 Tax=Leptospirillum sp. Group II RepID=B6AR13_9BACT Length = 325 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 147/295 (49%), Gaps = 20/295 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ L+DKP GM+S+D + V++ R GH G LDP+ATG+LP+ +G++T+ ++ + Sbjct: 14 SGMFLVDKPAGMTSHDVVDSVRKNLGFPRVGHGGTLDPMATGVLPVFVGKSTRLAEMIHG 73 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK YR R G TDT D++G+++ E +L L F G Q P MYSA+K Sbjct: 74 YDKTYRFDVRFGVTTDTGDSEGKLLTEIKFDQLDRVKLKGVLQDFTGVRLQKPPMYSAVK 133 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFI--RHEGNELELEIHCSKGTYIRTIIDDLG 188 G LY AR+GIEV REAR I +Y L + +G + CSKGT++RTI +++G Sbjct: 134 KNGTPLYRLARKGIEVEREARRIEIYSLEMLTVSPDGKTASFRVKCSKGTFVRTIAEEIG 193 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 E +G G HV+ L R + VE V+L L + E L L Sbjct: 194 EAIGLGGHVVSLCREEFGHFRVEDAVSLGDL---------ISMDMEEGLSSCLWSPSRIL 244 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGA-------PLEGLVRVTEGENGKFIGMGE 296 +P + + G + L +VR+++ GK I +G+ Sbjct: 245 ESFPEIRILDAHLPDIYRGARIPAFQIYRTSGLFNLSEMVRISD-RKGKCIAVGK 298 >UniRef50_Q6MMS4 tRNA pseudouridine synthase B n=1 Tax=Bdellovibrio bacteriovorus RepID=TRUB_BDEBA Length = 308 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 18/307 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+LL+DKP G+SS+D + +++RI + GH+G LDP+A+G++ + E TK SQY+L+ Sbjct: 8 NGLLLVDKPSGISSHDVVARLRRILSTRAVGHSGTLDPMASGLMACLVNEGTKLSQYILE 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK YR+ A+ G RTDT D G+ +E RP + E + + +G++E +YSA+K Sbjct: 68 GDKGYRLRAQFGIRTDTLDTTGETLETRPTDHLTRELILSEALKLQGEMEVEVPIYSAIK 127 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 QGKKLYEYAR EV + + +++ + + E +I CSKG+YIRT ID LG+ Sbjct: 128 VQGKKLYEYARGEQEVTIPKKVMKFWDIEPVEIGSDWAEFDIKCSKGSYIRTWIDLLGKA 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + LRR S Y +++ TLE + V+ L P +PM+ Sbjct: 188 LGCGAAMSGLRRTWSSPYKIDQAQTLEQIEASVKGG---------SLGPAFVPMELALPQ 238 Query: 251 YPVVNLPLTSSVYFKNGNP--------VRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 + + V NG + ++ ++V E G+ + + ++ Sbjct: 239 VKRIRIKGQDKVLLGNGQISHDLRSQLISAFNPDVDQYIQVLAQEGGELLAVIGLEPGRG 298 Query: 303 VAPRRLV 309 RR+ Sbjct: 299 FVLRRVF 305 >UniRef50_Q6MD66 tRNA pseudouridine synthase B n=15 Tax=Chlamydiales RepID=TRUB_PARUW Length = 262 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 84/214 (39%), Positives = 124/214 (57%), Gaps = 2/214 (0%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKF 65 + G+LL++KP+G +S ++ +++ + GH G LDP ATG++ + +G T+ Sbjct: 36 PPSHLEGILLINKPKGKTSFSLVRDLRKRLGVKKIGHAGTLDPFATGVMVMLVGRNYTRL 95 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 S L SDK Y A LG TD+ D +GQ++ + + + EQ+ A F+G IEQ+P M Sbjct: 96 SDQFLLSDKEYIAEAYLGVVTDSYDCEGQVLSQSNIIPTLEQIKEAFSLFQGKIEQVPPM 155 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA K QGKKLYE ARQGI V R+ I+++ + + L I CSKGTYIR+I Sbjct: 156 FSAKKQQGKKLYELARQGIVVERQPVKISIHT-ELLSYNYPYLNFRIECSKGTYIRSIAY 214 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 DLG KLGCGAH+ L R + +E + + Sbjct: 215 DLGTKLGCGAHLSNLTRTRSGAFCLENCLNGAEI 248 >UniRef50_B7ICP6 tRNA pseudouridine synthase B n=1 Tax=Thermosipho africanus TCF52B RepID=B7ICP6_THEAB Length = 306 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 142/290 (48%), Gaps = 19/290 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L KP+G++S+D + ++++ + GH G LDP A G+L I + AT+ +YL Sbjct: 1 MVGFLNAFKPKGVTSHDVIDELRKKLKTKKIGHAGTLDPFAEGVLVIGISGATRLLEYLK 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + KRY V A LG T+T D GQ+ EER S +++ A+ F+G +Q+P YSA K Sbjct: 61 NEKKRYYVKAILGLITETFDITGQVKEERVCQKSNDEIKNAILAFKGKYKQVPPAYSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 Y G++LY+ AR+G + + +YE+ I+ E E+ S GTYIR++ D+G K Sbjct: 121 YNGERLYKLAREGKIISLPPVEVEIYEIENIKIVPPEFSFEVVVSPGTYIRSLCMDIGYK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + L R +V K+ ++ + L +E + ++ ++ D Sbjct: 181 LGCGATAVELVRKSVGKFSIKDSINPFELS-------------SEQIVNRILRVEEVL-D 226 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPL-EGLVR----VTEGENGKFIGMG 295 P V + NG + R V NG+ + + Sbjct: 227 LPQVEIYKDYVEKIFNGVQPTMDFVKEIKDDFRKDQDVMLVCNGRLVAIA 276 >UniRef50_A8RBN0 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBN0_9FIRM Length = 276 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 134/297 (45%), Gaps = 24/297 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVLL+ K M+S+D + +++ I + GH+G LDP ATG+L + +G A K +L Sbjct: 1 MDGVLLIRKEAEMTSHDVVARLRHILKTKKIGHSGTLDPNATGVLLVLIGRACKVLPFLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D+DK Y LG++T D +++ E+ +T L A L TF G +Q+P M S++K Sbjct: 61 DTDKEYIAELELGKQTLGDDIWSEVLAEKEITPII-DLQALLHTFLGKQKQLPPMLSSIK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYEYAR V R +T YEL + E + + CS GTYIR++ D+ + Sbjct: 120 VNGKKLYEYARNKEAVEVPMRDVTFYELEVLDEES--MRFRVACSSGTYIRSLCRDVAQA 177 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 G + L R V ++ + VTLE + L + + Sbjct: 178 SGNLGCMKSLVRTKVGRFSLADCVTLEDVEA---------------GHFSLHSVAEVLAH 222 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P + NG VR R ++ + + + E D R Sbjct: 223 LPQI--TYEPMKDIYNGKHVRLDCKED----RAVIMDHLEAVAIYERDHGNVFRCVR 273 >UniRef50_Q1AW51 tRNA pseudouridine synthase B n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AW51_RUBXD Length = 265 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 18/280 (6%) Query: 32 VKRIY-NANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSD 90 +KR+ + GHTG LDPLA+G+L + +G AT+ S+Y+ DK Y AR G +DT D Sbjct: 1 MKRLLPRRTKVGHTGTLDPLASGLLVLLVGRATRLSRYVTGLDKTYVATARFGAASDTLD 60 Query: 91 ADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREA 150 ADG+I+E +L AL F G+I Q+P M SA++ G++LYE R+G+EV RE Sbjct: 61 ADGEILENAGPVPDEAELRRALPRFVGEIRQLPPMASAVRVGGRRLYELHRRGVEVEREP 120 Query: 151 RPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV 210 R + V+ L + + + CS GTY+RT+I DL LG A++ LRR V V Sbjct: 121 RLVRVHSLELLSFDPPAATFAVSCSSGTYVRTLISDLAASLGTAAYLTALRRTRVGHLRV 180 Query: 211 ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPV 270 E + + L + ++P + P V + +G + Sbjct: 181 EDALPPQDL-------------DPSTIHHRIIPPSGVLAHLPAVEADEGRARAVASGRGL 227 Query: 271 RTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 R +G LEG RV G+ + + + GR P ++ Sbjct: 228 RVAG-GLEGSFRV--ERGGELLAVYRAEG-GRARPEVVLC 263 >UniRef50_C1SPK2 tRNA pseudouridine 55 synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPK2_9BACT Length = 297 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 81/304 (26%), Positives = 143/304 (47%), Gaps = 16/304 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVL + K + M+S D ++ V+RI + GH G LDP+A G+LP+C+G ATK Y++ Sbjct: 1 MNGVLNIYKEKDMTSFDVVKAVRRITGVKKCGHLGTLDPMAEGVLPVCVGYATKLVDYMM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +DK Y +LG TD+ D+ G ++E+ + E++ L +F G+ E +SA+ Sbjct: 61 AADKEYVAQFKLGCSTDSYDSTGNVLEKCEDIKPDYEEVEKVLKSFVGEPELTIPAFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GK+ YE AR+G R + + ++ + +E E + C KGTY+R++I + G Sbjct: 121 KINGKRAYELARKGEIEDAGKRVMKINDITLMGYEYPEGMFRMSCYKGTYVRSVIHEAGL 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG + L R + + L L EL ++ E + +D+ + Sbjct: 181 ILGTYGVMSGLIRTVSGNFDHKTAYKLGELEELKDKGELAGAFTSV--------VDA--T 230 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSG----APLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + + +NG ++ E + G+ + E G +P Sbjct: 231 GWGTAVVHRDAVRLVQNGVSIKRHNYVKLPDGESDMYFMATPEGELLAFAEY-AVGDTSP 289 Query: 306 RRLV 309 R++ Sbjct: 290 LRII 293 >UniRef50_B9XFC5 tRNA pseudouridine synthase B n=1 Tax=bacterium Ellin514 RepID=B9XFC5_9BACT Length = 236 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 1/229 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G LL+DKP G +S+D + ++R + + GH G LDP ATG+L I LG TK S+ L+ Sbjct: 8 DGALLIDKPVGYTSHDVVDAIRRRFQIKKVGHCGTLDPNATGLLIIVLGRGTKLSERLMS 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSALK 130 SDK Y + G+ TD+ DADG++V PV + +L F GD Q+P M SA+K Sbjct: 68 SDKVYEGTIKFGETTDSYDADGELVTSLPVPPMTLGELNETAAAFVGDQMQVPPMVSAIK 127 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G LY+ AR+G+EV RE R I +Y F + + +KGTY+R++ DLG+K Sbjct: 128 KGGVPLYKLARKGVEVEREPRFIHIYNFRFAEYNEPIGRFRVAATKGTYVRSLAHDLGQK 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 LGCG H+ LRR K+ V + L+ EL ++ + L Sbjct: 188 LGCGGHLATLRRTVSGKFDVANAIRLDQALELSAAELEKRVIPFLKLAA 236 >UniRef50_Q0WVR7 tRNA synthase-like protein n=10 Tax=Magnoliophyta RepID=Q0WVR7_ARATH Length = 540 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 121/218 (55%), Gaps = 4/218 (1%) Query: 12 NG-VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 NG VLL++KP+G +S K++R+ + GH G LDP+ATG+L +C+G+ATK Sbjct: 320 NGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQ 379 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y + RLG+ T T DAD +++ + + AL +F G+I Q+P M+SA+ Sbjct: 380 GMIKGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAI 439 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDL 187 K G+K+YE AR+G V R I++++ R + L + CSKGTYIR++ DL Sbjct: 440 KVGGEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADL 499 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 + LG AH+ LRR ++ +Y L + + Sbjct: 500 AKALGSCAHLTALRRDSIGEYSANDAWEFNELEAAITK 537 >UniRef50_D0WDY9 tRNA pseudouridine synthase B n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WDY9_9ACTN Length = 315 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 94/323 (29%), Positives = 155/323 (47%), Gaps = 33/323 (10%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R ++ V+ +DKPQGMSS+DA+ +++R++ R GH G LDPLATG+L +C+G A++ Sbjct: 2 KRGQSGLSLVIGIDKPQGMSSHDAVNRIRRMFGERRVGHMGTLDPLATGVLAVCVGPASR 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ---LAAALDTFRGDIEQ 121 YL + DK Y G +TDT DA G+++ + V L + G Q Sbjct: 62 LDAYLTNHDKTYEARIAFGAQTDTDDAAGEVIRQAAVAPELSDATFAQEYLASIVGPRMQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-----LELEIHCSK 176 +P YSA+K G K YE AR+G V EARP+ V + + ++ ++ + SK Sbjct: 122 MPPAYSAIKKDGVKAYEAARRGKAVELEARPVEVRAADLLAIDTDDAGRVFWDVRLEVSK 181 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTYIR+I D G +LG AH+ LRR+ + +E V+LE Sbjct: 182 GTYIRSIARDAGLELGSAAHLSALRRVRAGRLGIEACVSLEE-------------AGRSG 228 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-------GLVRVTEGENG 289 + P+D +P + + + + + G P+ + + G+ + + Sbjct: 229 IAAACDPVD--LLGFPALEVDVRMAESIRCGRPLPLAALDPDAVHAHELGMRCIVFRDE- 285 Query: 290 KFIGMGEIDD-EGRVAPRRLVVE 311 + + E D G+ PR + + Sbjct: 286 -LVALYETDPFRGQAHPRCVFSQ 307 >UniRef50_A1R520 tRNA pseudouridine synthase B n=14 Tax=Actinomycetales RepID=TRUB_ARTAT Length = 311 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 142/314 (45%), Gaps = 29/314 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++++DKPQG +S+D + +++R+ + GH G LDP+ATG+L + + +AT+ Y++ Sbjct: 2 LSGLVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIV 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y RLG+ T T DA+G++ E + + +A + G I+Q+PS SA+ Sbjct: 62 GTSKTYTATIRLGETTITDDAEGEVTEARTAAHITDDAVAVGVAALTGPIQQVPSSVSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH------EGNELELEIHCSKGTYIRTI 183 K G++ Y R G EV ARP+T++ ++++ + CS GTYIR + Sbjct: 122 KVNGERSYARVRSGEEVKLAARPVTIHRFDVHSITRIDGGRVVDVDVTVECSSGTYIRAL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DLG LG G H+ LRR V Y +++ T +E+ ++ L + Sbjct: 182 ARDLGNALGIGGHLTALRRTQVGPYSLDQART-------LEELAEELEVLEMSLAARSL- 233 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRT------SGAPLEGLVRVTEGENGKFIGMGEI 297 P L + G + A +G+ + + Sbjct: 234 -------MPNRELSEQETTEISFGRRIAAGPGAGTPDAATAEKPAAAFAPSGELVAL-LA 285 Query: 298 DDEGRVAPRRLVVE 311 D P + Sbjct: 286 DTGSFAKPVLVFAP 299 >UniRef50_C2CXC9 Possible tRNA-pseudouridine synthase I n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CXC9_GARVA Length = 400 Score = 264 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 144/351 (41%), Gaps = 67/351 (19%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+LL+DKP+G++S+D + + + + R GH G LDP+ATG+L + G AT+ YLL Sbjct: 10 GILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGH 69 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-------FSAEQLAA----ALDTFRGDIEQ 121 DK Y + RLG+ T+T DADG +V + E L F G I Q Sbjct: 70 DKTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQ 129 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---------ELELEI 172 P+ +SA+K G + Y+ AR+G +V E R + +++ + N ++ I Sbjct: 130 TPTAFSAIKINGVRAYDLAREGKDVHLEPREVVIHDFSLLDARFNVGVSGAKVVDVRASI 189 Query: 173 HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTL---------------- 216 CS GTYIR + DLG LG G H++ LRR + ++ VE L Sbjct: 190 SCSSGTYIRALARDLGRVLGVGGHLVSLRRTRIGEFSVEDDRVLKLETRIRTFTDKNGVT 249 Query: 217 ------------EHLRELVEQ----------------AEQQDIPAAELLDPLLMPMDSPA 248 + + + ++ +L + +L +S Sbjct: 250 QTRAKAVVADRHDSVSDYFSDSVSNSSVACDLSGDSSCKKSAQKNYDLQNRVLSMFESAK 309 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG---LVRVTEGENGKFIGMGE 296 V + + + G + + V+ + E + + E Sbjct: 310 LTMQTVEISENQAKDLRFGRKIVIPAISEKNTIAYVKAEKDEQNDVVAVLE 360 >UniRef50_Q2NIZ2 tRNA pseudouridine synthase B n=7 Tax=Acholeplasmataceae RepID=TRUB_AYWBP Length = 283 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 79/301 (26%), Positives = 148/301 (49%), Gaps = 20/301 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG L++KP+ M+S+D + ++K+ ++ ++ GHTG LDPLA+G+L +C+G+ATK + Sbjct: 1 MNGFFLVNKPEKMTSHDVVFQIKKKFHFDKVGHTGTLDPLASGLLIVCVGKATKLAFLFD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RGDIEQIPSMYSAL 129 K Y+ + DT D G++++ + + + + + +F + QIP M+SA+ Sbjct: 61 KLSKTYQGTFLFNKHYDTLDVKGKLLDTKNIPLNDFAIQTSFASFHQKKYWQIPPMFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR-HEGNELELEIHCSKGTYIRTIIDDLG 188 K +G+K+Y ARQ V R + ++ ++++ +H SKGTYIR++ DL Sbjct: 121 KIKGQKMYRLARQNQVVDIPPREVFIHHFEKKSLFCHDQVDFLVHVSKGTYIRSLARDLA 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +L ++ L+R A+ + ++ T+E+L L+ L++ Sbjct: 181 LQLNTYGALLRLQRTAIGTHLLQNAKTIENLE----------------LNDLIL-DSIFF 223 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 + Y + L KNG + + V + N F+ +I DE + PR Sbjct: 224 ASYDELILNDYLIKLVKNGTYLDQRQIITQKPFIVKDS-NKNFVAYYDILDENKYYPRYF 282 Query: 309 V 309 Sbjct: 283 F 283 >UniRef50_UPI000050FC6C tRNA pseudouridine synthase B n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FC6C Length = 305 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 85/309 (27%), Positives = 140/309 (45%), Gaps = 26/309 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV++ DKPQG++S+ + +++R Y + GH G LDP+ATG+L + LG TK Y+ Sbjct: 8 GVIVCDKPQGLTSHGVVSRIRRWYGTRKVGHAGTLDPMATGVLVLGLGRGTKLLGYITGV 67 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV----TFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y RLG T T DAD + + + +A + RG I+Q+PS SA Sbjct: 68 SKTYLATIRLGSATPTDDADSEPDLFAEPAALSAVTDDGIAHGVSALRGSIDQVPSAVSA 127 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFI------RHEGNELELEIHCSKGTYIRT 182 +K G++ Y R G +V +AR + + + + ++++E+ CS GTY+R Sbjct: 128 IKVNGQRSYARVRAGEDVVLKARRVEISDFTILATRYSVAQGHIDVDVEVDCSSGTYVRA 187 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + DLG LG H+ LRR V + ++ V + ++ A A L Sbjct: 188 LARDLGGSLGVYGHLTALRRTRVGAFSLDEAVMIPDDLDIEAPALTSLAEVARTL----- 242 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG-LVRVTEGENGKFIGMGEIDDEG 301 P V++ + G + T +P +G V V GE + + E+ G Sbjct: 243 --------LPTVHVDSVEAKALMQGKTIGTDRSPDQGNDVAVIVGEE--LVSIAEVRAGG 292 Query: 302 RVAPRRLVV 310 + + Sbjct: 293 VLKSQTAFA 301 >UniRef50_D1AL32 tRNA pseudouridine synthase B n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL32_SEBTE Length = 280 Score = 263 bits (672), Expect = 6e-69, Method: Composition-based stats. Identities = 91/296 (30%), Positives = 151/296 (51%), Gaps = 24/296 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++LL+K + +SS A+ +K + GH G LDPLA G++ + + ATK S LL Sbjct: 1 MDGIILLNKEKDISSFKAINNLKYKLKLKKVGHAGTLDPLAEGLMIVLVNNATKLSDMLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG TDT D G+ + ++ E++ L+ F+G+ EQ P MYSA Sbjct: 61 KQSKEYYAECELGYETDTYDCTGEKTQVYDGEISVDKEKITDILEDFQGEYEQTPPMYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K GKKLY+ AR+GIEV R+++ + + + I GN++ IH GTYIR++I D G Sbjct: 121 IKINGKKLYDLARKGIEVERKSKTVNIEYINRISINGNKIGFYIHAGSGTYIRSVIQDFG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +LG A + L R + K+ +E + + + D +L+ ++ Sbjct: 181 RRLGTYATMTKLIRTKIGKFSLENAYREKEISD----------------DSVLLSVEKIF 224 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 DYP +++ KNG ++ + G + NG++ G+G I +G + Sbjct: 225 -DYPALDVTDEECFKMKNG--IKLNKEIPVGYYSIYN--NGEYKGIG-ISADGILK 274 >UniRef50_B0BXR2 tRNA pseudouridine synthase B n=16 Tax=Rickettsia RepID=TRUB_RICRO Length = 345 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 125/260 (48%), Gaps = 12/260 (4%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 N L + KP+G+SS + VK+I + GH G LD A G+LP +GEATK + L+D Sbjct: 3 NYWLNIYKPRGISSAQLVSIVKKILGKTKIGHAGTLDVEAEGILPFAVGEATKLIRLLID 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K Y + G +T++ D G+++ + S E+ A F G + QIP +SALK Sbjct: 63 ARKTYIFTVKFGMQTNSGDCAGKVIATKDCVPSQEEAYAVCSKFIGSVTQIPPAFSALKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELE--IHCSKGTYIRTIIDDLGE 189 G + Y+ AR+ +V + R IT+Y+L + + CSKGTYIRT+ +DL Sbjct: 123 NGVRAYKLAREEKKVELKPRNITIYDLKCLNFDEKNATATYYTECSKGTYIRTLAEDLAL 182 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 L VI LRR V + E + + + D L+ + +++ Sbjct: 183 SLQSLGFVIELRRTQVGIFKEENAIRI----------KSPDEITKNALEAKSIKIEAILD 232 Query: 250 DYPVVNLPLTSSVYFKNGNP 269 D V++ + + K G Sbjct: 233 DILVLDATDSQAQQIKYGQK 252 >UniRef50_Q6AJY7 tRNA pseudouridine synthase B n=1 Tax=Desulfotalea psychrophila RepID=TRUB_DESPS Length = 246 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 93/238 (39%), Positives = 136/238 (57%), Gaps = 8/238 (3%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQYLLD 71 G+ L+DKP G++S + +V+RI + GH G LDP ATG+L +C G ATK +D Sbjct: 9 GIFLIDKPVGITSFGVVSRVRRILGMKKVGHAGTLDPFATGLLVVCAGRPATKMISSFMD 68 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y LG T+T D +G + + V AE + L F+G Q+P YSALK Sbjct: 69 GEKEYIATLCLGVETETQDPEGAEIARKQVGFLHAETIETCLAGFKGTQMQVPPAYSALK 128 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELL-----FIRHEGNELELEIHCSKGTYIRTIID 185 +QGK LY YAR+GIEV ++AR ITV+E+ + + L + + CSKG+YIRT+ Sbjct: 129 HQGKPLYYYARKGIEVKKDAREITVHEIERLGEGDLEGDHPSLVIRVRCSKGSYIRTLGS 188 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVT-LEHLRELVEQAEQQDIPAAELLDPLLM 242 D+G+ LGCGAH+ LRR + VE +T ++ L E + + + + E + LL Sbjct: 189 DIGKVLGCGAHLTDLRRTKSGFFNVEDALTDVDMLAEDAHERFMKKVLSVESVGKLLQ 246 >UniRef50_B2UQ50 tRNA pseudouridine synthase B n=3 Tax=Verrucomicrobia RepID=B2UQ50_AKKM8 Length = 244 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 132/232 (56%), Gaps = 1/232 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVLL+DK + M+S+D + +R + GH G LDP+ATG+L + +G+ATK L+ Sbjct: 11 SGVLLIDKARDMTSHDVVAIARRSLGIKKIGHCGTLDPMATGLLMLVVGKATKLQDKLMC 70 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y LG T + DA G+IV E V + + + A D F G EQIP M SA+K Sbjct: 71 EHKEYAGTLMLGVETSSQDAMGEIVAEYSVDGVTEQAVREAFDRFDGAFEQIPPMVSAIK 130 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G LY+ AR+G E+ RE RP+ V+ R E++ + CSKG Y+R+ D+G+ Sbjct: 131 KDGVPLYKLARKGQEIVREPRPVEVFGHGISRVAIPEVDFTVQCSKGFYVRSYAYDIGKA 190 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 LGCGAH+ LRR + ++R +T++ L+ + + + + + L +L+ Sbjct: 191 LGCGAHLSALRRTRSGSFTLDRAITVDTLKTAPREELFRAMLSLKELADILI 242 >UniRef50_C5NXZ4 tRNA pseudouridine synthase B n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXZ4_9BACL Length = 307 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 92/300 (30%), Positives = 152/300 (50%), Gaps = 24/300 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + K +G++S+D + KV++I + GH+G LDP G+L + LG ATK S Y +D Sbjct: 4 GILPIYKERGVTSHDVVFKVRKILQMKKIGHSGTLDPEVDGVLLLLLGGATKVSDYAMDL 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR LG +T T D G+IV++ V + ++L L + G+IEQ P +YSA+K Sbjct: 64 GKSYRAEVCLGLKTTTEDLTGEIVDDCKVSNINIDELKEILSSMIGEIEQTPPIYSAIKV 123 Query: 132 QGKKLYEYARQGI-EVPREARPITVYELLFIRH------EGNELELEIHCSKGTYIRTII 184 G+KLYEYAR+G +V R + +Y++ FI + + ++I C KGTY+RTI Sbjct: 124 NGRKLYEYARRGQFDVEIPTRKVNIYDITFIENSEYYKDDRFYFSIDISCGKGTYVRTIA 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +GEKL + + L R + +E + L + + V+ L+ L+ Sbjct: 184 TSIGEKLNLPSTMSKLTRTRSGEITLENCLKLSEVEQKVQDG---------SLEQSLLRK 234 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP----LEGLVRVTEGENGKFIGMGEIDDE 300 + ++ V +P + NG R + P +G+V + I + + D+ Sbjct: 235 EYALEEFQFVEIPKFRAKQVMNGLRFRKNQFPDYDFTDGIVFTY---ENEAIAIYHLKDK 291 >UniRef50_B9FM24 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9FM24_ORYSJ Length = 525 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%) Query: 19 KPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRV 78 KP G +S K++R+ N + GH G LDP+ATG+L +C+G+ATK K Y Sbjct: 314 KP-GWTSFTVCGKLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSG 372 Query: 79 IARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLY 137 + RLG+ T T DAD +++ P E + +FRG+I Q+P M+SA+K G+K+Y Sbjct: 373 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKVGGEKMY 432 Query: 138 EYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDLGEKLGCGA 195 + AR+G V R I++++ R + L + CSKGTYIR++ DLG+ LG A Sbjct: 433 DKARRGETVELSPRRISIHQFDIERSLEDRQNLIFRVICSKGTYIRSLCADLGKALGSCA 492 Query: 196 HVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 H+ LRR ++ + V + L E + + Sbjct: 493 HLTALRRDSIGDFSVNDAWSFAELEEQITKG 523 >UniRef50_C7MNL5 tRNA pseudouridine 55 synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNL5_CRYCD Length = 340 Score = 260 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 132/281 (46%), Gaps = 23/281 (8%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M + RR + V+ +DKP GM+S+D + +++RIY R GHTG LDP ATG L +C+G Sbjct: 1 MGK-RREASGYSLVIGVDKPAGMTSHDVVDRIRRIYGERRVGHTGTLDPAATGALAVCVG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFS---AEQLAAALDTFRG 117 AT+ ++L+ K Y G TDT DA G+++E+ PV S + A D+ G Sbjct: 60 PATRLDRFLVGHRKEYEFTVVFGAATDTDDAQGRVIEQLPVPVSVGNEAAVRAYFDSQLG 119 Query: 118 DIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----LELEIH 173 Q P YSA+K GKK Y AR+G + RPI +Y+L + E E + Sbjct: 120 TQHQRPPAYSAIKVNGKKSYAEARRGNVIELALRPIEIYKLDLVGFEQTEDMVSWCVRAE 179 Query: 174 CSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPA 233 S GTY+R+I D G G AHV LRRL VE +TL+ + + Sbjct: 180 VSAGTYVRSIARDAGLAFGTCAHVGSLRRLRSGSLAVEDCLTLDEIERNPH---TSALDP 236 Query: 234 AELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG 274 LL+ ++ + +G P+ Sbjct: 237 LTLLNRRIL------------FAGDGQANDVAHGRPLVIDN 265 >UniRef50_C1E906 Predicted protein n=5 Tax=Eukaryota RepID=C1E906_9CHLO Length = 230 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 84/217 (38%), Positives = 121/217 (55%), Gaps = 6/217 (2%) Query: 14 VLLLDKPQGMSSNDALQKVKRI---YNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 VLL+DKP+G +S D + K + + + + GH G LDP ATG+L +C+G+ATK Sbjct: 2 VLLIDKPKGWTSFDVVGKTRWLSRRMGSKKVGHCGTLDPNATGLLILCVGKATKMVDSFT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y +LG+ T + D ++ E P S LAA GDI+QIP M+SA+ Sbjct: 62 GMDKVYTGTMKLGEGTPSQDCCEEVDERLPWEHVSDADLAAGAKAMEGDIKQIPPMFSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDL 187 K +G++LY+ AR+G V R+ R T+ R + + CSKGTY+RT+ DL Sbjct: 122 KVKGERLYKAARRGETVERKERACTINSFEVWRDKVDSQLAHFRVDCSKGTYVRTLAHDL 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 G LG AH+ LRR ++ ++ VE T+E L E E Sbjct: 182 GRNLGTVAHLTELRRESIGEHSVEDAWTVESLFEACE 218 >UniRef50_B6GCN3 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GCN3_9ACTN Length = 316 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 87/320 (27%), Positives = 133/320 (41%), Gaps = 30/320 (9%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R+ ++N +L +DKP G++S+D + +V+R N R GH G LDPLA+G++ + +G+AT+ Sbjct: 3 KRKPSELNLLLAVDKPVGITSHDVVSRVRRALNERRVGHAGTLDPLASGVMIVGVGQATR 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQ 121 + KRY G T T DA+G+ V+ S L F G+ EQ Sbjct: 63 LLGRITLERKRYLARIMFGCETTTDDAEGEPTRIADVSDDVLSPLFAKGVLREFVGEQEQ 122 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----LELEIHCSKG 177 +P YSA+ G + Y+ AR G +V AR I VY + + + SKG Sbjct: 123 VPPAYSAISVDGVRSYKRARAGEDVELPARTIEVYAADLVAVDEVDGRAVWTASFDVSKG 182 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIR++ D+G G AHV LRR A +E L + A L Sbjct: 183 TYIRSLARDIGRAAGSAAHVADLRRTASGPVTSGMCARIEDLS--------PEHAHAAAL 234 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV--------TEGENG 289 DP + PV L NG + G V +G Sbjct: 235 DP------ARVLGIPVRELTDDELAAVLNGRAIPCGSPRAAGEPFVPGDAASTYALVNDG 288 Query: 290 KFIGMGEIDDEGRVAPRRLV 309 + + + + + + Sbjct: 289 RLRAIAAREGD-YLRMETVF 307 >UniRef50_A4XL67 tRNA pseudouridine synthase B n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=TRUB_CALS8 Length = 287 Score = 259 bits (662), Expect = 9e-68, Method: Composition-based stats. Identities = 76/294 (25%), Positives = 145/294 (49%), Gaps = 23/294 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+LL+DKP G++S+D ++ V++++ + GH G LDP A+G+L + +GEATK S + Sbjct: 1 MNGILLVDKPVGLTSHDVVEYVRKLFKT-KVGHCGTLDPFASGLLVLLIGEATKLSSFFT 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y + G +TDT D G++ + ++ L +G++E +YSA K Sbjct: 60 QTKKTYIATMQFGIKTDTLDITGKVQLRNNIFIEQNEIEDCLKDLKGEVELSVPIYSAKK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +G+KLYEYAR+GI++ +Y + I + + ++ CS GTYIR++ +++ +K Sbjct: 120 VKGRKLYEYAREGIDIEIPKIKSIIYSIEMINYCYPYMTFKVECSHGTYIRSLAEEIAKK 179 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L A ++ LRR + ++ +L+ + E ++P+++ + Sbjct: 180 LSTVATLVQLRRAKNGVFDIKAAFSLDFISE-----------------DSIIPLENLILN 222 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 + + + NGNP+ +R+ + F + D Sbjct: 223 --EIIVNESVYKKLINGNPLTRKDIKE---IRLNDSLFEDFYKISMKDAFFVYK 271 >UniRef50_C2D7B6 Possible tRNA pseudouridine 55 synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7B6_9ACTN Length = 315 Score = 259 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 130/312 (41%), Gaps = 23/312 (7%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R IN ++ L KP+G++S+D + ++ I + R GH G LDPLA G+L I +G+AT+ Sbjct: 2 KRGQSGINCLIALHKPKGITSHDCINVLRNILHERRIGHAGTLDPLADGVLLIGIGQATR 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ---LAAALDTFRGDIEQ 121 Y++ DK Y GQ+T T D +G I V E L F G I+Q Sbjct: 62 LLSYIVGHDKSYEASITFGQQTTTDDTEGDICASSLVPACVEDASYAQRVLRHFTGQIQQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH------EGNELELEIHCS 175 +P YSA+ G + Y RQG + R + VY+ + S Sbjct: 122 VPPAYSAISLGGIRAYNAVRQGTPLDLSPRSVCVYKAELSDITFEPSTHAPIWHVHFCVS 181 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 KGTYIR++ D+G AH+ L R + + +TL+ L++ + Sbjct: 182 KGTYIRSLARDIGLYAQTHAHLSALERSSSGSITIADCITLDELKK---------ESLSS 232 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE---GLVRVTEGENGKFI 292 L + +L P D D L T V G + L V K Sbjct: 233 LTNRILNPFD--VIDAARYMLGDTDLVDMSYGRSLTIRKNCLNDCANSQLVGCVYQNKLY 290 Query: 293 GMGEIDDEGRVA 304 G+ E D+ + Sbjct: 291 GIYERKDDKLIC 302 >UniRef50_C3JA73 tRNA pseudouridine synthase B n=6 Tax=Bacteria RepID=C3JA73_9PORP Length = 261 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 11/240 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRI------YNANRAGHTGALDPLATGMLPICLGEATK 64 + ++ +DKP +S D + + + + + GHTG LDP ATG+L +C G ATK Sbjct: 23 MGSIIAVDKPLDWTSFDVVNRFRIMVKQTVGLKKIKVGHTGTLDPKATGLLLLCTGRATK 82 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIP 123 + L+ + K Y + G T + D + P + L AL F G Q+P Sbjct: 83 QIEQLMLNRKEYVATLKFGATTPSFDLEHPEDAHYPYEHITQGMLEEALQEFLGTTLQVP 142 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 ++SA+ GK+ Y+ AR+G + E +PIT++EL + E L + C KGTYIR++ Sbjct: 143 PIFSAVSVGGKRAYDLARKGKDCQLEGKPITIHELEVVSFEPPYATLRVSCGKGTYIRSL 202 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DLGE+L GA++ LRR + VE +TLE L + + AE E DP++ P Sbjct: 203 ARDLGERLQSGAYLTALRRTQLGNVRVEDSLTLEELPDFLAHAEL----NEEGFDPIVPP 258 >UniRef50_Q1NKV8 TRNA pseudouridine synthase B n=3 Tax=Deltaproteobacteria RepID=Q1NKV8_9DELT Length = 259 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 87/217 (40%), Positives = 127/217 (58%), Gaps = 4/217 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQYLLDS 72 V+ LDKP G SS +Q V+R + GH G LDP A+G+L +C+G AT+ + L+ Sbjct: 13 VIPLDKPVGPSSFRLVQLVRRALGIKKVGHAGTLDPFASGLLLVCVGRGATRLVERLMAG 72 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE-QLAAALDTFRGDIEQIPSMYSALKY 131 DK Y +LG TDT D +GQ+ VT +L L FRG+I Q+P +SA+K+ Sbjct: 73 DKEYLATLQLGVATDTHDREGQVTATEEVTHEQLLRLQEVLFRFRGEILQVPPAFSAVKH 132 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLGE 189 QG+ LY YAR+G + + R + ++EL + + L + + CSKGTYIR++ ++G+ Sbjct: 133 QGRPLYAYARRGEIIEKPPRRVKIHELTPLELDRRQRRLVIRVRCSKGTYIRSLAHEIGQ 192 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 LGCGAH++ LRRLA + VE V + L E A Sbjct: 193 SLGCGAHLLELRRLASGPFRVEEAVPGDLLAEPATAA 229 >UniRef50_B3DQF2 tRNA pseudouridine synthase B n=6 Tax=Bifidobacterium RepID=TRUB_BIFLD Length = 387 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 153/381 (40%), Gaps = 86/381 (22%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L++DKPQG++S DA+ V+ + + GH G LDP+ATG L I G AT+ ++ Sbjct: 7 SGLLIIDKPQGVTSFDAVAAVRGALHIKKVGHAGTLDPMATGTLVIAFGHATRLLNAIVA 66 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDT----------------- 114 DK Y RLG RT T DA+G+++ + + L+A L Sbjct: 67 HDKTYEATIRLGLRTTTDDAEGEVLVDDEARSRWQTLSAQLTEGGQSGEPTALPTASWQD 126 Query: 115 ---------FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG 165 F GDIEQ+P+ +SA+K G++ Y+ AR+G +V + RP+T+ E + Sbjct: 127 LLTRTIATNFTGDIEQVPNTFSAIKINGQRAYDLAREGKDVELKPRPVTISEFTVLDIRS 186 Query: 166 N-----------------------ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRR 202 ++++ I CS GTYIR + DLG++LG G ++ LRR Sbjct: 187 GFVAGEQTAEPLREDANTGAIPALDVDVRISCSSGTYIRALARDLGKELGVGGYLTRLRR 246 Query: 203 LAVSKYPV-ERMVTLEHLRELVE---------------------------------QAEQ 228 V ++ + + L +++ + Sbjct: 247 TRVGRFALPDDASGLIAPEAMLDTRTHTVTAHTDQKTFTNREGQTVTRNKCVLDTPEGLA 306 Query: 229 QDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGEN 288 D LLD L + P +++ + + G + + + + Sbjct: 307 GDERRNWLLDHALTMEQAARGAMPALDITPEEASELRFGRRIERT---ISEPTAAIVPQT 363 Query: 289 GKFIGMGEIDDEGRVAPRRLV 309 + E + + P + Sbjct: 364 HDVAAIIERANAHQAKPVTVF 384 >UniRef50_A0QIX1 tRNA pseudouridine synthase B n=93 Tax=Actinomycetales RepID=TRUB_MYCA1 Length = 309 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 96/307 (31%), Positives = 153/307 (49%), Gaps = 14/307 (4%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP GM+S+D + + +RI+ R GH G LDP+ATG+L + + ATK L + Sbjct: 5 GLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAA 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y RLGQ T T DA+G +V +++ + AA+ RGDI Q+PS SA+K Sbjct: 65 AKSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIIDDL 187 GK+ Y+ R+G V ARP+ + E ++++E+ CS GTY+R + DL Sbjct: 125 AGKRAYKLVREGQAVELPARPVRIDRFEVRDLRAAGECVDVDVEVDCSSGTYVRALARDL 184 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G LG G H+ LRR V ++ +E+ L+ L E + D + + D Sbjct: 185 GAALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSYSLDEACLLIFGRRDLSADEA 244 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 + L ++ + A ++G+ +G+ I + + DEG R Sbjct: 245 EAAGNGRALAAAAAGN-----GRALAAAGIDGVYAA-CAPDGRVIAL--LRDEG-ARTRS 295 Query: 308 LVVEYPA 314 +VV PA Sbjct: 296 VVVIRPA 302 >UniRef50_C8NZL8 tRNA pseudouridine synthase B (TRNA pseudouridine 55 synthase) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZL8_ERYRH Length = 277 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 92/298 (30%), Positives = 140/298 (46%), Gaps = 25/298 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L ++KPQ M+S D + KV+++ + GH+G LDP+ATG+L + + +ATK YL Sbjct: 1 MDGILCINKPQEMTSFDVVAKVRKLLKV-KVGHSGTLDPMATGVLVLAVNQATKALPYLG 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 +DK YR +LG +T T D G + E+ + +S E + + G Q SA Sbjct: 60 LNDKTYRGKCKLGMKTSTGDIWGAVEEQASIPQYSREDVLTCFEKLTGPQTQRVPKVSAK 119 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKK YEY EV + IT+Y L I EG+E+E S GTYIRT+ +D+G Sbjct: 120 KINGKKSYEYVFNDEEVKQLYTDITIYNLELIALEGDEIEFRAFVSNGTYIRTLCEDIGM 179 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG + L R V Y +E +TLE L + L+ + + Sbjct: 180 LLGTLGTMSALEREQVGPYTLENALTLEAL----------------TPETKLISVKDTIA 223 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P + + Y KNG + E V + + G + + E + E R Sbjct: 224 -LPKI-VNPRMEDYVKNGKRLELD--IEEDQVLI---DTGTYYAVYEREHETTFKSVR 274 >UniRef50_C7N8V4 tRNA pseudouridine synthase B n=1 Tax=Leptotrichia buccalis C-1013-b RepID=C7N8V4_LEPBD Length = 355 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 169/343 (49%), Gaps = 47/343 (13%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++LL+K +G+SS A+ ++KR A +AGH G LDP+A G++ + + +ATKFS L+ Sbjct: 8 DGIILLNKSKGISSFKAIDELKRKIKAKKAGHAGTLDPMAEGLMVVMINDATKFSGDLMK 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y V LG +TDT D++G+++EE + S Q+ + +F+G I+Q+P MYSA+ Sbjct: 68 KDKEYYVEMELGYKTDTYDSEGKVIEEYKSEIELSDSQIIRTIHSFKGRIKQVPPMYSAI 127 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-------ELELEIHCSKGTYIRT 182 K +G+KLY+ AR+GIE+ R R + + + I+ ++ H S GTYIR+ Sbjct: 128 KVEGQKLYDLARKGIEIERMPRDVEIMNIYKIKIHRPKENSSRIKISFYAHVSSGTYIRS 187 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH-------LRELVEQAEQQDIPAAE 235 ++ D+GEKL A + L R + + +E V+LE L+ELVE+ + + A Sbjct: 188 LVHDIGEKLKVFATMTKLVRTKIGRLSIEDAVSLEEVQSEIGKLKELVEEKRENESFWAT 247 Query: 236 LLDPLLMPMD----------SPASDYPVVNLPLTSSVYFKNGNPV--------------- 270 D + DY +N+ KNG V Sbjct: 248 KSDAAIRAEKIREIVCFVEIEYILDYYGINVSNEKYGKLKNGMTVIDTFKKFENIGKDIK 307 Query: 271 RTSGAPLEGLVRVT----EGENGKFIGMGEID--DEGRVAPRR 307 R ++ + + +F G+ +I R+ +R Sbjct: 308 RQEHIRENQKFKIYVRNRDTQKREFKGIVKIVSIRGNRIYLKR 350 >UniRef50_C8W716 tRNA pseudouridine synthase B n=2 Tax=Atopobium RepID=C8W716_ATOPD Length = 313 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 136/301 (45%), Gaps = 21/301 (6%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R IN ++ +DKP G++S+D + +V+R++ R GH G LDP A+G+L + +G ATK Sbjct: 2 KRGASGINALIAIDKPLGLTSHDVVSRVRRVFGEKRVGHAGTLDPNASGVLVVGIGLATK 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLA---AALDTFRGDIEQ 121 L K Y G RT T DADG++V V + A G I Q Sbjct: 62 LLGLLTLDRKGYVADISFGARTSTDDADGKVVATAAVPEELYDIEFARIACTKLVGTINQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-------LELEIHC 174 +P + SA+ GK+ Y+ R+G AR +++Y+ + + Sbjct: 122 LPPVVSAISVDGKRAYQLVREGKMPELVARRVSIYDASLLAVHTPSDKSDSLVWTVAFDV 181 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA-EQQDIPA 233 SKGTYIR+I DLG+ LG AH+ LRR + V LE L + Q E + + Sbjct: 182 SKGTYIRSIARDLGQSLGTEAHISGLRRTFSGPITLGSCVLLEELEQSPAQILEAKHLNP 241 Query: 234 AELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIG 293 E L + + + ++Y V + + G P LV + E+ +G Sbjct: 242 TETLGYSVHRLTA--AEYKCVEVGK------RFGIPEDLCEIANNSLVSLVWNES--LVG 291 Query: 294 M 294 + Sbjct: 292 I 292 >UniRef50_B9MR51 tRNA pseudouridine synthase B n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR51_ANATD Length = 290 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 89/297 (29%), Positives = 144/297 (48%), Gaps = 36/297 (12%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVLL+DKP G++S+D ++ V++++N +AGH G LDP ATG+L I LGEATK S + Sbjct: 1 MNGVLLVDKPVGITSHDVVEFVRKVFNV-KAGHAGTLDPFATGLLVILLGEATKLSSFFT 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y + G RTDT D G+I E+ V +++ +G+IE ++SA K Sbjct: 60 SQEKTYIATMQFGIRTDTLDITGKIKEKNSVIVEEKEIEECFKILKGEIELKVPIFSAKK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+KLYEYAR+GI + +Y + I LE ++ CS GTYIR++ + + E Sbjct: 120 LNGRKLYEYARKGINIEIPKVKSIIYNIEIINFSYPYLEFKVQCSHGTYIRSLAEKIAEN 179 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L + LRR+ + ++ VTL +R ++P+ + Sbjct: 180 LSTVGLLSELRRIRSGFFDLKDAVTLSDIRA-----------------ESIIPVCRLFKN 222 Query: 251 YPVVNLPLTSSVYFKNGNPV----------------RTSGAPLEGLVRVTEGENGKF 291 + + + NGNP+ ++ +V + + EN F Sbjct: 223 --EIKVGRKTYKKILNGNPLVNQDIEDIIDIDTVFADFYKIWVDKVVFIYKRENDVF 277 >UniRef50_D0RQI7 tRNA pseudouridine synthase B n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQI7_9RICK Length = 297 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 75/302 (24%), Positives = 135/302 (44%), Gaps = 13/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + L KP G +S+ L +K+ + + GH G LDP+A G+LPI + EATK + Sbjct: 2 VHGWINLYKPTGFTSSYCLNVLKKKFKLKKIGHIGTLDPMAEGVLPIAINEATKTIPLIN 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 S K Y G++T+T D++G+I+ +T S E + A+ F G I Q P +SA K Sbjct: 62 KSKKTYFFEVNWGKQTNTLDSEGEIMNISKITPSYEDIKKAIKKFIGTINQSPPEFSAKK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN--ELELEIHCSKGTYIRTIIDDLG 188 GK+ Y+ AR+G++ + +Y L + H+ N + + C GTY+R++ D+ Sbjct: 122 IDGKRAYQLAREGVKFELKKVKKKIYGLKILNHDFNNKKSLFVVSCESGTYVRSLAKDIA 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +L + + RL + + L+ L + ++ + S Sbjct: 182 TELKTFCYCSKIVRLRDGIFRKKNSYALKTL---------INNENINDFFKYMLDIKSVL 232 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVR-VTEGENGKFIGMGEIDDEGRVAPRR 307 P + + KNG V + + + + +G + G P+R Sbjct: 233 YHIPTIEINDKKLKLIKNGMKVSMLEEVGSKEYKEILADYHQNVVALGSM-KNGVFYPKR 291 Query: 308 LV 309 ++ Sbjct: 292 IL 293 >UniRef50_Q2NBZ4 TRNA pseudouridine synthase B n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NBZ4_ERYLH Length = 362 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 157/369 (42%), Gaps = 78/369 (21%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNA-----NRAGHTGALDPLATGML 55 MS + +G ++LDKP+G+ S A+ VKR + GH G LDP A G+L Sbjct: 1 MSDLKPAP---HGWIILDKPRGLGSTQAVGAVKRNLREGGYAKTKVGHGGTLDPEAEGVL 57 Query: 56 PICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF 115 PI LGEATK + +LD+ K Y + G+ TDT DA+G+I +AA L+ F Sbjct: 58 PIALGEATKLAGRMLDASKIYEFTVQFGEETDTLDAEGEITARSDRRPPMAAIAAVLEHF 117 Query: 116 RGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-----------E 164 G+IEQ+P YSAL GK+ Y+ AR G EV + R +T+Y++ RH + Sbjct: 118 TGEIEQVPPKYSALMVDGKRAYDRARAGEEVELKTRRVTIYDISLSRHPREGGDPANLGD 177 Query: 165 GNELELEIHCSKG----------------------------------------------T 178 +E +L+ G T Sbjct: 178 HDESQLDPRLRGGDGVGFLADADLTSTFQTTSGRPDPYDPGAPLELADAITLTAHVSKGT 237 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIR++ D+ LG HV YLRR+ + + ++L+ L E+ + A L Sbjct: 238 YIRSLARDIARALGTVGHVTYLRRIKAGPFAEFQAISLDKLNEIGKGAP---------LQ 288 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID 298 LL+P+++ D P + L S+ + G + +GL + + + E+ Sbjct: 289 DLLLPLEAGLDDIPALTLDSDSAQAVRQGRVLS-ELPQTDGLYLAKL--DDVPVALVELS 345 Query: 299 DEGRVAPRR 307 G R Sbjct: 346 G-GTARVVR 353 >UniRef50_B1GZN9 tRNA pseudouridine synthase B n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=TRUB_UNCTG Length = 230 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 90/210 (42%), Positives = 134/210 (63%), Gaps = 1/210 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +I+G+LLLDKP G++S DA+ K+K++ N + GH G LDP +TG+L + +G+ATK Sbjct: 7 NIDGLLLLDKPFGITSFDAVYKIKKVLNVEKTGHCGTLDPASTGLLLVLMGKATKLQAKF 66 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSA 128 + DK Y LG TD+ D DG+++ E V + E++ ++ F G+I QIP MYSA Sbjct: 67 MKKDKVYLSSFLLGMVTDSGDLDGKVISENSVLNINIEKIKKMVEMFEGEIFQIPPMYSA 126 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LKY GKKL E ARQGIEV R+ R +T+ + + ++G+ +++ I CS GTYIRT+ DLG Sbjct: 127 LKYNGKKLCELARQGIEVERKPRKVTIKKFEVLSYDGDIVKVRIECSSGTYIRTLAQDLG 186 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEH 218 L CGA V LRR + + ++ + + Sbjct: 187 NVLKCGATVKTLRREKIDIFDIKDALRFKD 216 >UniRef50_C2KR47 Possible tRNA-pseudouridine synthase I n=2 Tax=Mobiluncus mulieris RepID=C2KR47_9ACTO Length = 371 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 102/354 (28%), Positives = 148/354 (41%), Gaps = 62/354 (17%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L++DKPQG++SN L +V+RI + G+ G LDP+ATG+L LG+ATK QYL S Sbjct: 24 GLLVVDKPQGLTSNQVLSRVRRIAGQKKVGYAGTLDPMATGLLIFALGKATKLLQYLGSS 83 Query: 73 DKRYRVIARLGQRTDTSD-ADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y R G TDT D A + + LA +L +RG I Q+PS +SA+K Sbjct: 84 DKAYVARVRFGVSTDTDDAAGTVVGAAGAGGLTGSVLADSLGAYRGAIHQVPSSFSAIKV 143 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE------------------------ 167 G++ Y ARQG +V ++RP+T+ L Sbjct: 144 AGQRAYALARQGQDVKLKSRPVTISRLELESGLAPHEIDVSIGRAAQETTPRNPGGENPG 203 Query: 168 --------------------LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSK 207 +++ + CS GTYIR + DLG LG GAH+ LRR V Sbjct: 204 ATGGGAALAAADGGRVTVADVDIAVECSAGTYIRALARDLGRDLGTGAHLTALRRTRVGN 263 Query: 208 YPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD-YPVVNLPLTSSVYFKN 266 Y +E L L E V ++P+D+ +P + L T + Sbjct: 264 YGLEAARNLAELGEEVATQGIIS----------IIPLDAAVKALFPTLELDETQARALGY 313 Query: 267 GNPVRTSGAPL-----EGLVRVTEGENGKFIGMGEID-DEGRVAPRRLVVEYPA 314 G V + E G+ I + + + + V PA Sbjct: 314 GQTVTLPSPSPALYNNNQPLAAALDEAGQVIALVTPRVGDTAIRVKPTWVLRPA 367 >UniRef50_C9MUE6 tRNA pseudouridine synthase B n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MUE6_9FUSO Length = 358 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 94/336 (27%), Positives = 163/336 (48%), Gaps = 48/336 (14%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++LL+K +G+SS A+ +K++ A + GH G LDP+A G++ + + EATKFS L+ Sbjct: 8 DGLILLNKSKGVSSFGAINHLKKVIKAKKVGHAGTLDPMAEGLMIVMINEATKFSDNLMK 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y V LG +T T D +G ++ + + S ++ A+++F+G I+Q+P MYSA+ Sbjct: 68 KDKEYYVEMELGYKTGTYDLEGTVIAKYDSEINISDSEIIKAVNSFKGKIKQVPPMYSAI 127 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----------LELEIHCSKGTY 179 K +G+KLY+ AR+GIEV R R + + E+ I+ + + + S GTY Sbjct: 128 KIEGQKLYDLARKGIEVERAERDVEISEIREIKVIRPDKNSENVQNIKISFYVKVSSGTY 187 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLE-------HLRELVEQAEQQDIP 232 IR+++ D+GEKLG A + L R + ++ +E ++LE L+ L+E + + Sbjct: 188 IRSLVYDIGEKLGVFATMTRLVRTKIGRFEIEDAISLEKAKAEIDKLKNLMEGKTENESF 247 Query: 233 AAELLDPLLMPMD----------SPASDYPVVNLPLTSSVYFKNGNPV------------ 270 A D + DY +N+ KNG V Sbjct: 248 WATKNDSAIRAEKIREIVCFVEIEYVLDYYGINVSNVKYGKLKNGMTVIDTFKKFENISK 307 Query: 271 ---RTSGAPLEGLVRVTEGENG----KFIGMGEIDD 299 + + ++ +F G+ +I + Sbjct: 308 EASKGANVRENQKFKIYVRNKNTNVREFKGIVKIVN 343 >UniRef50_C7M8Y8 tRNA pseudouridine synthase B n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M8Y8_CAPOD Length = 558 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 13/228 (5%) Query: 1 MSRPR--RRGRDINGVLLLDKPQGMSSNDALQKVKRI------YNANRAGHTGALDPLAT 52 M P R GR +LL+DKP SS A+ K+K + GH G LDPLA+ Sbjct: 1 MITPEELREGR----ILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIKIGHAGTLDPLAS 56 Query: 53 GMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAA 111 G+L IC G+ TK + D+ K Y +G T + D + +I P + E + Sbjct: 57 GLLVICTGKFTKKITEIQDAVKTYTGTITVGATTPSYDKETEINAHYPTDHITPELIEQV 116 Query: 112 LDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELE 171 F G++ Q P ++SA+K +GK+LYE+AR G E+ R I +Y + +L+ E Sbjct: 117 RMQFIGELTQTPPVFSAIKKEGKRLYEFARDGKEIEVPQRTIYIYSFNIDASQFPKLQFE 176 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 + CSKGTYIR++ +D G+ LG G ++ LRR + + V +T + Sbjct: 177 VVCSKGTYIRSLANDFGKALGSGGYLSALRRTKIGDFSVNDALTPDEF 224 >UniRef50_Q319E0 tRNA pseudouridine synthase B n=8 Tax=Prochlorococcus marinus RepID=TRUB_PROM9 Length = 307 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 80/313 (25%), Positives = 158/313 (50%), Gaps = 24/313 (7%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 + +G L+++K +G +S+D +++++++ N + GHTG LDP G LPI +G AT+F QYL Sbjct: 3 NKDGFLVINKDKGCTSHDCVKQIRKLLNTRKVGHTGTLDPEVIGTLPIAIGSATRFIQYL 62 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y +LG RT+T D G+I+ ++ S E+L L+ FRG I+QIP S+ Sbjct: 63 PQG-KTYIGQIKLGIRTNTDDIHGEIINQKCWPKISDEKLDQYLNKFRGLIKQIPPKVSS 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDD 186 + G++ Y+ + R + + EL+ ++ + +EL+I+CS GTYIR I D Sbjct: 122 VHVNGERAYKKSFNNENFELAPREVKIDELILMKWDQINGIIELKINCSAGTYIRAIARD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LGE L ++ L+R++ + + + + +++ ++Q + ++P S Sbjct: 182 LGEILNSEGCLLQLKRISACGFHEKNSIKISDIKKGIDQKNASN---------FIIPTIS 232 Query: 247 PASDYPVVNLP-LTSSVYFKNGNPVRTS--------GAPLEGLVRVTEGENGKFIGMGEI 297 + + L +++ G ++ + ++V + +G+G + Sbjct: 233 ALNHISTLILNKEEDINFWQTGRAIKFDINYFNEGNNFDNKKPIKVVDKRK-MLLGIGFL 291 Query: 298 DDE-GRVAPRRLV 309 + E + P+ ++ Sbjct: 292 NKELTNINPKLVL 304 >UniRef50_C8WI31 tRNA pseudouridine synthase B n=2 Tax=Coriobacteriaceae RepID=C8WI31_EGGLE Length = 340 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 105/332 (31%), Positives = 150/332 (45%), Gaps = 25/332 (7%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R +R ++ V+ ++KP GMSS+D + + + I+ R GHTG LDP+ATG+LPIC+G Sbjct: 1 MPRVKRGLSGLSLVVGVNKPAGMSSHDVVNRCRSIFGERRVGHTGTLDPMATGVLPICVG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRG 117 AT+ YL DKRYRV G TDT DA G +V V E AA + + G Sbjct: 61 PATRLGAYLTGHDKRYRVSIAFGAGTDTDDAAGTVVRTGEVPDRVLDPEFAAAFVASLVG 120 Query: 118 DIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH------EGNELELE 171 +Q+P YSA+K GKK YE AR G + R I VY+ + E ++ Sbjct: 121 RRKQMPPAYSAIKVNGKKSYEAARAGNIIDLAPRDIEVYDARLLGVHEGDGEELPSWDVS 180 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDI 231 SKGTYIR++ D G LGC AHV L R + +E V+LE L +L ++A + Sbjct: 181 FEVSKGTYIRSLARDAGVALGCPAHVAALERTELGLLTLEECVSLETLADLKDRAALDPV 240 Query: 232 PAAELLDPL----LMPMDSPASDYPVVNL-------PLTSSVYFKN--GNPVRTSGAPLE 278 + L + + P L ++ G Sbjct: 241 RLLGVRFSYAQGDLAKKVANGAQLPAAELPLFERRRTTSAIEMCACTAGVRESCEPPRDG 300 Query: 279 GLVRVTEGENGKFIGMGEIDD-EGRVAPRRLV 309 LV V + K + + D+ R R + Sbjct: 301 ELVAVLT--DNKLVALYAYDEGRARFETRCVF 330 >UniRef50_D0NZ97 tRNA pseudouridine synthase B, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NZ97_PHYIN Length = 319 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 151/335 (45%), Gaps = 51/335 (15%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP G++S+ + ++R+ + + GH G LDP+ATG+L + +G AT+F QYL Sbjct: 1 MSGFLNVRKPAGLTSHRCVGVMRRVLDTRQVGHGGTLDPMATGVLMLAVGRATRFLQYLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K YR RLG TD+ D G + + P S E + L F G+I+Q+P SA+ Sbjct: 61 -TGKEYRGAIRLGITTDSDDITGDVRTQLPAPWISEEMVNMTLQRFIGEIDQVPPRVSAI 119 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G +LY+ AR + + R + + ++ + E+ GTYIR+I + GE Sbjct: 120 KKNGVRLYKLARAKKDFDVKPRRVCIKKIDVQSFTQGDFP-EV---GGTYIRSIARECGE 175 Query: 190 KL--------------------GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 L G + L R + + + + +R ++E+ E Sbjct: 176 ALIVPPEYLDSTCKLRNSVGDFCVGGTLTELERTRSGAFAIADSLDFDEIRSMLERGESP 235 Query: 230 DIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE----GLVRVTE 285 L P+++ P LPL ++ Y+ NG V +E ++T Sbjct: 236 -----------LQPIENMLQHLPSAELPLQTAQYWLNGGTVTIPAEDIEFVDHNYYKLTS 284 Query: 286 GENGKF------IGMGEIDDEGRVAP----RRLVV 310 GE + +G+ ++D + + +RL + Sbjct: 285 GEPIRIYSSSTMLGIAQVDPQPQYKEVFLRKRLFI 319 >UniRef50_D2NNU2 Pseudouridine synthase n=2 Tax=Rothia mucilaginosa RepID=D2NNU2_9MICC Length = 365 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 133/303 (43%), Gaps = 38/303 (12%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +++ + +G++++DKP GMSS+DA+ +++RI R GH G LDP ATG+L + + +ATK Sbjct: 3 KKQPQGPSGLMVIDKPAGMSSHDAVSQMRRIAGTRRVGHAGTLDPAATGVLILGINKATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFS----------AEQLAAALDT 114 YL+ DK Y RLG T T DA+G+ P ++ A+ Sbjct: 63 LLTYLVGQDKTYDATIRLGIETLTEDAEGEHTAAHPDAVEALTGMDAEQMRARILEAVAQ 122 Query: 115 FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL------ 168 GDI Q+PS SA+K G + Y R G +V ARP+T+ E Sbjct: 123 LSGDILQVPSAVSAIKINGVRSYARVRSGEQVELVARPVTISEFTVHSVTAGFAEYVIED 182 Query: 169 -----------------ELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE 211 ++ + CS GTYIR + DLG+ LG G H+ LRR V +E Sbjct: 183 PENEGEHMATSVPVIDCDVTVSCSSGTYIRALARDLGKILGTGGHLTALRRTRVGAVVLE 242 Query: 212 RMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVR 271 L L++ E++E L + + L + G + Sbjct: 243 DAADLAQLKQRREESEAPLEDLPLLPLEE-----AARRIFGARELSAAEASDISYGRRIS 297 Query: 272 TSG 274 SG Sbjct: 298 PSG 300 >UniRef50_B0MTY5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MTY5_9BACT Length = 240 Score = 250 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKFSQY 68 + ++DKP +S+D ++K+K + GH G LDPLATG+L +C+G+ATK + Sbjct: 19 IAVIDKPLEWTSSDVVRKIKFALRRAGYPKIKVGHAGTLDPLATGILLVCIGKATKMADA 78 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 L +K Y LG T + D + I P + E + L + G+ Q P +YS Sbjct: 79 LQAEEKEYVADLMLGATTPSFDLEHPIDRTYPFEHITREAVEEVLRSLTGERLQTPPLYS 138 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 A K +G + YE AR G EV I +YE+ + ++ + + + CSKGTYIR++ ++ Sbjct: 139 AKKVEGVRAYELARAGEEVELRKALINIYEMELMEYDLPRIRIRVRCSKGTYIRSLAGEI 198 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 G+ LG GAH+ L R + ++ L E +++AE + Sbjct: 199 GQALGSGAHLTSLCRTRSGGFRLDAAHELNFFLEKLQKAETK 240 >UniRef50_C8PR21 tRNA pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PR21_9SPIO Length = 372 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 89/367 (24%), Positives = 148/367 (40%), Gaps = 73/367 (19%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +P + ++ KP G++S +L +VK + GHTG LD A G+L + G Sbjct: 1 MPKPEPQF-----IIPFAKPSGITSFTSLWQVKHALGTKKVGHTGTLDSFADGLLVLLSG 55 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 + TK Y+ D DK YRV+ G+ TDT D +G +++E+P+ + +A+ G IE Sbjct: 56 KLTKLVPYITDFDKTYRVLFYFGKETDTLDPEGTVIDEKPLPV-YADVVSAIRQLTGTIE 114 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE----------- 169 Q+P +YSA+K G++L + R+G V R +T+Y + E+ Sbjct: 115 QVPPVYSAVKQAGERLSDRIRRGETVSVPPRTVTIYSIDIEEIFYEEVSAVPADAAGGNK 174 Query: 170 ------------------------------LEIHCSKGTYIRTIIDDLGEKLGCGAHVIY 199 L + CSKGTYIR+++ D+ + G A+V Sbjct: 175 AAIHADGTDRDTVGIDPLDAANDKTVTGAVLCVRCSKGTYIRSLVRDIAHRCGSAAYVYA 234 Query: 200 LRRLAVSKYPVERMVTLEHLREL-------------------VEQAEQQDIPAAELLDPL 240 LRR AV + +E+ L+ + A + + Sbjct: 235 LRRTAVGPFTLEQAAGFSALQPFGNAAAHAVDADSTDTPAGCADSAAVPHPVTDDAIKQA 294 Query: 241 LMPMDSPAS---DYPVVNLPLTSSVYFKNGNPVR----TSGAPLEGLVRVTEGENGKFIG 293 +P+ + + + L F NG P+ TS PL + T G +G Sbjct: 295 ALPLSETLARAMHFQMAALKEQYYAAFMNGKPISGHWFTSEQPLSDIGTATVFYEGCCVG 354 Query: 294 MGEIDDE 300 + + Sbjct: 355 LMTKNGN 361 >UniRef50_D0WR19 tRNA pseudouridine synthase B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WR19_9ACTO Length = 345 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 85/267 (31%), Positives = 134/267 (50%), Gaps = 19/267 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ ++DK G++S+D + V+R+ + GH G LDP+ATG+L I LG ATK +Y+ Sbjct: 14 DGLAVIDKDPGVTSHDVVGAVRRLAGTKKVGHAGTLDPMATGVLCIGLGRATKLLRYVTG 73 Query: 72 SDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y R G T T DA G++V A +LA A+ G++ Q+PS SALK Sbjct: 74 TAKEYEATIRFGIETSTEDAQGELVRARGAREADAAELARAMANLTGEVLQVPSSVSALK 133 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---------NELELEIHCSKGTYIR 181 +G++ Y+ R+G EV +ARPI V + +L++ + C GTY+R Sbjct: 134 VEGRRAYDLVREGREVVLDARPIRVDVFEAVGGPRFAEACGAPVFDLDVRVVCGAGTYVR 193 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 + DLGE LG GAH+ LRR V + V V++ + VE Q + Sbjct: 194 ALARDLGEALGFGAHLTSLRRTRVGPWDVGEAVSVRECADAVEADGQMPVHTLA------ 247 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGN 268 D + +P + + ++ + G Sbjct: 248 ---DLCRAMFPALEVSEQAARDLRMGR 271 >UniRef50_C9RKT6 tRNA pseudouridine synthase B n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKT6_FIBSS Length = 318 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 98/328 (29%), Positives = 142/328 (43%), Gaps = 52/328 (15%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G +LLDK G +S AL +KR++ R GH G LD A+G++ G AT+ Y+ Sbjct: 4 SGFVLLDKIAGETSFKALFPLKRVFCTKRVGHAGTLDLRASGLIIAATGRATRLLPYIEA 63 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERP----------------VTFSAEQLAAALDTF 115 DK Y LG TDT + DG++VE+ + + L A L F Sbjct: 64 KDKCYTFRLHLGYETDTLEWDGKVVEQDKMGCHPGAEGDRIQCGVPSVTRADLEAVLPQF 123 Query: 116 RGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELL----------FIRHEG 165 GDI+Q+P YSA+K G + + A +G E+ + R I + L Sbjct: 124 IGDIDQVPPNYSAVKIDGHRASDLANRGREIELKPRRIHIESLKVVGEGLVTEGCTGKSF 183 Query: 166 NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 +LE +CSKGTYIR++ DL LG V +RR + V+R V + L Sbjct: 184 ATFDLECNCSKGTYIRSLGRDLARALGTCGCVSMIRRHRIGDVTVDRAVRGDALTP---- 239 Query: 226 AEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVR-------TSGAPLE 278 L+P+D D+PVV L + GN V S P Sbjct: 240 -------------EHLLPVDQVL-DFPVVRLNDDQVKAIRLGNWVPWRTPVENLSTTPGA 285 Query: 279 GLVRVTEGENGKFIGMGEIDDEGRVAPR 306 T ++G IG+G + D GR+ P+ Sbjct: 286 EKFVFTADKDGAVIGLG-VYDPGRICPK 312 >UniRef50_Q14NU4 Putative trna pseudouridine synthase b protein n=1 Tax=Spiroplasma citri RepID=Q14NU4_SPICI Length = 303 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 143/297 (48%), Gaps = 23/297 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ L++KP G +SN +Q++K+ N+ GH G LDPLATG+L + + ATK S+YLL Sbjct: 3 DGIFLINKPTGKTSNQVIQEIKQKLEINKIGHAGTLDPLATGLLVVLINNATKMSEYLLT 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRG-DIEQIPSMYSAL 129 +DK Y V RL TDT D G ++ + P + L + F G EQ P YSA+ Sbjct: 63 ADKAYDVEMRLFIETDTGDITGNVLNKTAPFKIQKKVLKKIFNEFNGFMYEQYPPKYSAI 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDL 187 K GKKLYEYARQ EV + R +T+ + +++ + ++ + C+KGTYIR+++ D+ Sbjct: 123 KVNGKKLYEYARQDKEVKIKPRTVTIKAIKLKKYDAHNHTIKFSVLCTKGTYIRSLVTDI 182 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 KL A V L R + + + ++ E + + L+ D+ Sbjct: 183 AAKLNTIATVTALCRTQSGNFLLSKAISPETVN----------------FNELISMYDAL 226 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 ++ + L + G P+ + +N + + + + A Sbjct: 227 FTNNQQLLLYHHD-EEIRQGKPIVI--IKHTDPIIFIIDKNKNVLAIYKHIGKHVYA 280 >UniRef50_A4S143 Predicted protein n=3 Tax=Mamiellales RepID=A4S143_OSTLU Length = 279 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 125/232 (53%), Gaps = 7/232 (3%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIY---NANRAGHTGALDPLATGMLPICLGEATKFSQY 68 N +L+DKPQ +S D + +V+R+ + GH G LDP+ATG+L +C+G+ATK + Sbjct: 45 NMTILMDKPQKYTSFDVVARVRRLSRERGVKKVGHCGTLDPMATGLLILCVGKATKSVEE 104 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 DK Y +LG+ T + DAD ++ E P + +L G I+Q+P MYS Sbjct: 105 YSGMDKTYTGTIKLGEGTPSQDADEEVNEREPWEHVTDVELREGARKLTGAIKQLPPMYS 164 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIID 185 A+K GK+LY+ AR+G+EV R+ R + ++E R + + H SKGTY+RT+ Sbjct: 165 AIKVNGKRLYKSAREGVEVERKHRDVVIHEFEVERDAEDAQIVHFSAHVSKGTYVRTLAY 224 Query: 186 DLGEKLGCGAHVIYLRRLAVSK-YPVERMVTLEHLRELVEQAEQQDIPAAEL 236 DL + LG H+ LRR + + VE T+E L E + + + Sbjct: 225 DLCKSLGTTGHLTALRRTKIGSEFDVEDAWTIEQLAEACGEDPSKFKKTPKK 276 >UniRef50_A6GK85 TruB (Fragment) n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GK85_9DELT Length = 385 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 150/370 (40%), Gaps = 59/370 (15%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R R+ GVLL+DKP+G +S+D + V+ GH G LDP A+G+L +C+G Sbjct: 1 MGRKRKAESRYTGVLLVDKPEGPTSHDVVGWVRWALGERSVGHCGTLDPPASGLLVVCVG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFS-AEQLAAALDTFRGDI 119 E TK L DKRY +G+ T T+D G+ + PV + E+ ++ RG + Sbjct: 61 EGTKLVDALTSVDKRYWTRLVIGRSTTTADGAGETLTTAPVDAAMLERARELVEALRGPL 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI-------------RHEGN 166 E P YSA+K GK+ + AR G V RP+ V+ L + E Sbjct: 121 ELPPPAYSAVKVDGKRAHALARAGELVELPKRPMAVHALTVLGAGLEPAAATGEDEGEQG 180 Query: 167 ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER--------MVTLEH 218 +ELE+ +KGTYIR++ ++LG +LGC AH+ LRRLA V+ L Sbjct: 181 WIELELRVAKGTYIRSLAEELGRRLGCPAHMARLRRLACGPLTVDDPGAVGGLIAQELPP 240 Query: 219 LRELVEQAEQQDIPAA--------------ELLDPLLMPMDSPASDYPVVNLPLTS---- 260 + + PA E L+ L P V L + Sbjct: 241 REGAPPRWRVELPPADPPVTDNDARRARAREWLESRLRAPWRDLP-MPAVMLDADASEAA 299 Query: 261 ------SVYFKNGNPVR----------TSGAPLEGLVRVTEGENGKFIGMGEIDDEG--R 302 +G + V G + + E D++G R Sbjct: 300 EERAKLVERLLHGQRLPLHPTMRARLGLENVAGGPCALVHLGLQVMILAVVESDEDGDTR 359 Query: 303 VAPRRLVVEY 312 + P R+V Sbjct: 360 LQPTRIVRLR 369 >UniRef50_C1XV12 tRNA pseudouridine synthase B n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XV12_9DEIN Length = 322 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 91/341 (26%), Positives = 133/341 (39%), Gaps = 68/341 (19%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 + +DKP G++S+D + +R R GHTG LDPLATG+L + +TK +L D Sbjct: 3 LFAVDKPLGITSHDVVDAARRRLGTRRVGHTGTLDPLATGVLILASNSSTKLVPFLSAED 62 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y G T+T DA+G + E PV FS + L L F EQ+P YSA+K G Sbjct: 63 KEYLAWVSFGATTETLDAEGPVTAEAPVRFSKKDLETTLPHFLSLTEQVPPAYSAVKIGG 122 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEG---------------------------- 165 K YE AR+G + RP+ E+ + E Sbjct: 123 VKAYEAARKGESLELTPRPVKYLEVTLLAFEPAPKTYRIGPSPNGWEITPVKGRQAPGDA 182 Query: 166 -----------------NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKY 208 + + GTY+R DLGE LG A + L R V + Sbjct: 183 GTQRGRLVQLPRALGTYPTAVIRLVVGSGTYVRAFARDLGELLGTKAFLSGLVRTRVGRV 242 Query: 209 PVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGN 268 +ER V LE + E Q + +P+V L G Sbjct: 243 GLERCVPLEKIDPEHPLEETQAL------------------SFPLVQLSHAEVKRVLEGV 284 Query: 269 PVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P+ P +G V + + + I + E D ++ +R+ Sbjct: 285 PLP---IPAQGYVALVDNRR-QLIAIAE-GDGFKLKIKRVF 320 >UniRef50_D1PGN2 tRNA pseudouridine synthase B n=2 Tax=Prevotella RepID=D1PGN2_9BACT Length = 238 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 8/225 (3%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKFSQY 68 ++ +DKP MSS AL V+ + + + GH G LDPLATG+L +C G+ TK + Sbjct: 8 IIAIDKPYRMSSFGALAHVRYLLSKKLGFKVKIGHAGTLDPLATGVLVLCTGKCTKQIEQ 67 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 L K Y +LG T + D + + P + + + L F G+I+Q+P YS Sbjct: 68 LQTHTKEYTATLQLGATTASYDKEHSVNHTYPTEHITRQLVEETLKQFVGEIQQVPPTYS 127 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIID 185 A+K G + Y R G EV + + + V E+ + E + + C KGTYIR++ Sbjct: 128 AVKVNGDRSYALRRAGEEVQLKPKTVRVDEIELTDYNDEEKTASIRVVCGKGTYIRSLAR 187 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD 230 D+G L GA++ LRR + VE ++ +H +E +++ +D Sbjct: 188 DIGRALDSGAYLTALRRTKAGSFAVENCISFDHFQEWLDEQPLED 232 >UniRef50_A6LEL7 tRNA pseudouridine synthase B n=49 Tax=Bacteroidetes RepID=TRUB_PARD8 Length = 235 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 120/219 (54%), Gaps = 7/219 (3%) Query: 14 VLLLDKPQGMSSNDALQKVK----RIYNANR--AGHTGALDPLATGMLPICLGEATKFSQ 67 +L +KP +S D + K + R + GH G LDPLATG++ +C G ATK Sbjct: 8 ILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKRID 67 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMY 126 K Y +LG+ T + D + +I P + E + L TF G I+QIP ++ Sbjct: 68 EFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPPVF 127 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SA K +GK+ YE AR+G EV +++ + + EL + + +++ + CSKGTYIR + D Sbjct: 128 SACKVEGKRAYELARKGEEVELKSKTLVIDELELLECDLPVIKIRVVCSKGTYIRALARD 187 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 +G+ LG GAH+I L R + + ++ ++ E + + +EQ Sbjct: 188 IGKALGSGAHLIGLERTRIGEVTLDMCMSPEEIDDFLEQ 226 >UniRef50_C1A8P0 tRNA pseudouridine synthase B n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8P0_GEMAT Length = 310 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 89/306 (29%), Positives = 125/306 (40%), Gaps = 21/306 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVL +DKP G SS+D + V+R R GH G LDP ATG+L I +G AT+ Y++ Sbjct: 15 SGVLYVDKPAGRSSHDMVGVVRRAARTRRVGHAGTLDPFATGLLVIAVGTATRLLPYIVG 74 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-------FSAEQLAAALDTFRGDIEQIPS 124 K Y + G T+T D G +V E PV AA G I QIP Sbjct: 75 EPKVYDATIQFGADTNTDDGTGIVVREAPVPDAAVLADPVHAVRLAAEAILTGHITQIPP 134 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 YSA G + Y+ AR+G V P+ V + + L++ I C GTYIR + Sbjct: 135 QYSAKHVDGVRAYDLARRGEVVDLAPVPVHVRGWEWRGASESTLDVRITCGGGTYIRALA 194 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 DLG LG AH LRR+ V+ V+ + L + + L Sbjct: 195 RDLGRALGSAAHCSVLRRVQSGPASVDHAVSFDALA----------PGSVIDGEVPLRSP 244 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 D L V + G + + + V G +G R Sbjct: 245 LELLGDMATQILDEEGLVALRFGRTLEATVPGAQ----VALLHEGAIAALGVRTAGDRWQ 300 Query: 305 PRRLVV 310 PR +++ Sbjct: 301 PRVVLI 306 >UniRef50_C0QZ24 Pseudouridylate synthase n=2 Tax=Brachyspira RepID=C0QZ24_BRAHW Length = 295 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 71/300 (23%), Positives = 126/300 (42%), Gaps = 27/300 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYN------ANRAGHTGALDPLATGMLPICLGEATK 64 + G +L+KP G++S DA+++ K I R GH G LDP A G+L + G TK Sbjct: 1 MKGFCILNKPVGITSFDAIKQTKIILKQKENILEKRVGHAGTLDPFADGVLILAFGRYTK 60 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDT-FRGDIEQ 121 D +K Y G+ DT D +G ++ S E+L + T F+G+I+Q Sbjct: 61 LFFLFDDLNKEYIASGIFGESRDTDDIEGNTIKTSNNNNKLSFEELENIIKTNFKGNIKQ 120 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 P +YSA K GK+ Y+ AR + + + ++ + ++ +++ SKGTYIR Sbjct: 121 KPPIYSAKKINGKRAYDLARDNKSFELKDVDVCIEKIELLEYDYPYFKIKTSVSKGTYIR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 +II D+GE G A+ L+R+++ Y ++ +E + + Sbjct: 181 SIIRDIGEITGNLAYTKELKRVSIGNYNIDMSCNIEDIN-----------------KNKI 223 Query: 242 MPMDSPASDYPVVNL-PLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 + ++ + + GN + + + E + E Sbjct: 224 LSFFYMFKNFDKTIIEDASDIRQILCGNTKTIEKIKVNNKYMALTDNKNNLLAIIEKNIE 283 >UniRef50_D1BAB8 tRNA pseudouridine synthase B n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB8_THEAS Length = 301 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 89/302 (29%), Positives = 141/302 (46%), Gaps = 21/302 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +G LL+DK +G+ S ++ V+R + + GH G LD A+G+L +G AT+ S ++ Sbjct: 3 SGFLLIDKEEGLRSTACVEAVRRSLGRDFKVGHAGTLDSGASGLLVALVGRATRLSNLVM 62 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR + RLG RTDT D G+I++ PV + A L+ L +F G Q P SA+ Sbjct: 63 SFSKEYRALVRLGIRTDTEDITGRILDRCPVPRWDAGDLSRVLASFLGCRLQRPPAVSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-LELEIHCSKGTYIRTIIDDLG 188 G++ +E AR G E R + V + G + + + + C KGTY+R+I DLG Sbjct: 123 HVGGRRAHELARSGEEPNIVPREVFVRRIEVGEMLGPDVVSIRVSCGKGTYVRSIARDLG 182 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 E+LG + LRR +V + VE + + EL + L L+P++ Sbjct: 183 ERLGTWGTIERLRRTSVGPFRVEDALPSGQMGELGTRD----------LLSRLIPLERLG 232 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFI-------GMGEIDDEG 301 P +P NG +R VR G + G+ ++ +G Sbjct: 233 EFLPGGRVPAELDALCSNGGAIRIRDL-EAFSVRAPYVSGGLVLVRYSRGMGIYQLVGDG 291 Query: 302 RV 303 R+ Sbjct: 292 RL 293 >UniRef50_C6X4Q1 tRNA pseudouridine synthase B n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X4Q1_FLAB3 Length = 233 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 120/208 (57%), Gaps = 8/208 (3%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNAN-------RAGHTGALDPLATGMLPICLGEATKFS 66 ++LLDKP +S A+ K+K + GH G LDP ATG+L +C G+ TK Sbjct: 11 IILLDKPLDWTSFQAVNKLKYKLKREFNLPKKFKIGHAGTLDPRATGLLIVCTGKFTKII 70 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADG-QIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 + D+ K Y+ ++G +T++ D + +I+ + ++ Q+ L++F G+I+Q P + Sbjct: 71 PGIQDAPKEYQTEIKIGVQTESYDTEKPEILPQDFSHITSAQINEVLESFVGEIDQTPPV 130 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA+K G + Y+ AR+G +V ++R TV+ + + E + + CSKGTYIR++ Sbjct: 131 FSAIKIDGSRAYDLARKGKDVEMKSRKTTVHYISEVEVELPIIRFTVGCSKGTYIRSLAH 190 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERM 213 D+G+ LG GA++ LRR + +Y ++ Sbjct: 191 DIGQDLGVGAYLTNLRRTKIGEYSIDSA 218 >UniRef50_UPI0000D546F1 tRNA pseudouridine synthase B n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D546F1 Length = 291 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 22/302 (7%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 L++KP+ +S D K+K+ Y + GH+G LDP A G++ I TK Y+ +SD Sbjct: 7 FYLVNKPKTWTSQDLCTKIKKTYKFRKVGHSGTLDPNAEGLMLIATNGFTKLFDYIENSD 66 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFS--AEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y+V A +G + T D D + + R + S +++ + L G Q P ++SA+K Sbjct: 67 KTYKVKALIGYSSPTIDIDSEFNKIRDIDVSSYKKEIESFLVGILGSSTQTPPIFSAIKV 126 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 +GK+LY+YARQ EV R I V + + G+E+E I SKGTYIR+I+ DLG+ L Sbjct: 127 KGKRLYKYARQNKEVDIPKRTIHVKDTQLLSTVGSEIEFLITVSKGTYIRSIVYDLGKHL 186 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP--LLMPM-DSPA 248 A V L R V + + + + A+LLD ++ P+ Sbjct: 187 DTEAIVKELVRTKVGNHDIND---------------PEVVMNAKLLDQDYVMKPINWESL 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 P ++L S++ KNG + + VT + + E ++ P ++ Sbjct: 232 LTLPHIDLDKESNLLIKNGQLLSKDLFEEKTKYIVTI--ENEIKAIYEPFNDKYFKPDKV 289 Query: 309 VV 310 ++ Sbjct: 290 II 291 >UniRef50_A4AHD1 TRNA pseudouridine synthase B n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AHD1_9ACTN Length = 311 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 100/321 (31%), Positives = 147/321 (45%), Gaps = 31/321 (9%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M++P R +G+L +DKPQG++S+ + + + + GH G LDP+ATG+L + Sbjct: 1 MAKPPRNPA--SGILFVDKPQGITSHGVIARARASVGTRKIGHAGTLDPMATGLLVLGAN 58 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI----VEERPVTFSAEQLAAALDTFR 116 AT+ Y + DK+Y RLG ++T DA+G++ S E +AAA+ Sbjct: 59 NATRLLTYFVGLDKQYLATIRLGASSNTDDAEGELSPAADAAAIAAISDEAIAAAVAGLT 118 Query: 117 GDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL---ELEIH 173 G I Q PS SA+K GK+ Y AR G EV R +T+ + E E + + Sbjct: 119 GPIMQRPSSVSAIKVDGKRAYTLARSGEEVVLAERAVTISVFDILEIERAEFIDVRVRVD 178 Query: 174 CSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPA 233 CS GTYIR + DLG LG G H+ LRR V + V R L+ Sbjct: 179 CSSGTYIRALARDLGGVLGVGGHLTALRRTRVGPFEVSRASVLDD--------------- 223 Query: 234 AELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIG 293 +L L+ P + V L S+ G V GA G + V G+ IG Sbjct: 224 -DLAGQLVSPAAVAGELFESVELDDQSAFELSRGRQVPL-GAVGTGPIAVVNS-VGRLIG 280 Query: 294 MGEIDDEGRVAPRRLVVEYPA 314 + E+ D R++ +PA Sbjct: 281 LAEVVDGRT----RILSNFPA 297 >UniRef50_B1X5A1 Putative tRNA pseudouridine 55 synthase n=1 Tax=Paulinella chromatophora RepID=B1X5A1_PAUCH Length = 322 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 93/317 (29%), Positives = 138/317 (43%), Gaps = 36/317 (11%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G LLL+KP M+S + KV+R Y+ R GH G LDP TG LP+ +G AT+ YL + Sbjct: 18 GFLLLNKPANMTSQQCVAKVRRTYSVKRVGHGGTLDPDVTGALPVAIGSATRLLPYLP-T 76 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 +K Y +LGQ T T D +G+I+ + + + E++ L+ FRG I+Q P SA+ Sbjct: 77 EKSYIGEIQLGQVTSTDDLEGEILRNKIIPKLNQEEVDKTLEKFRGIIQQRPPNISAVHI 136 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGN--ELELEIHCSKGTYIRTIIDDLGE 189 G++ Y AR+G + R +TVY L E L I CS GTYIR+I DLGE Sbjct: 137 SGERAYTRARRGESMVIPLRTVTVYGLTIKHWEPKTGRLRFSIRCSSGTYIRSIARDLGE 196 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LGCG + +L+R +P+ + ++ L + + PL+ P+ Sbjct: 197 VLGCGGCLAWLQRNEALGFPINIAIPMKVLGQ-------------NSIPPLIDPL-VVLR 242 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTS-----------------GAPLEGLVRVTEGENGKFI 292 L Y++ G V Sbjct: 243 HMDFYRLQQEELSYWRCGRSFPCDSKRIIAMPKSDGYHYAISFLEGKFPLVLITSEDTLA 302 Query: 293 GMGEIDDEGRVAPRRLV 309 G+ RV PR ++ Sbjct: 303 GIA-YRRSNRVHPRIVL 318 >UniRef50_C6W615 tRNA pseudouridine synthase B n=5 Tax=Sphingobacteriales RepID=C6W615_DYAFD Length = 244 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 102/204 (50%), Gaps = 1/204 (0%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+L+DKP +S D K+KR + GH G LDPLATG+L +C G+ TK + Sbjct: 24 VILIDKPLTWTSFDVANKLKRACKFKKIGHAGTLDPLATGLLILCTGKKTKQIDNFQAQE 83 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y LG+ T + D + E P + E L A G IEQ+P ++SA+K Sbjct: 84 KEYTGTLVLGKTTPSIDLESDFDAEYPTDHITPEVLENARQQLTGHIEQVPPLFSAIKID 143 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 G + Y+ AR+G E + R + + ++ I CSKGTYIR+++ D G G Sbjct: 144 GVRAYKLARRGEEAEIKKRAVEIKLFEIDATHFPSIDFRIICSKGTYIRSMVRDFGVLAG 203 Query: 193 CGAHVIYLRRLAVSKYPVERMVTL 216 GA++ L R + + ++ L Sbjct: 204 SGAYMSKLCRTRIGDFELKDAWEL 227 >UniRef50_B5ZBG4 tRNA pseudouridine synthase B n=15 Tax=Ureaplasma RepID=TRUB_UREU1 Length = 229 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 66/215 (30%), Positives = 112/215 (52%), Gaps = 3/215 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 +++++KP +SND +QKVKRI A + GH G LDP A+G+L + + E TK L Sbjct: 8 IIVINKPINWTSNDVVQKVKRIIKAKKVGHAGTLDPNASGILVLGINEGTKLLTKLTLDS 67 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RGDIEQIPSMYSALKYQ 132 K Y + G T+T D+ G+I+ + + ++ +A++ + + Q P +SALK Sbjct: 68 KTYVAEIQFGISTNTYDSTGEIISKINKFITLTEIESAIENLYKNEYWQKPPKFSALKIN 127 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLGEK 190 GKK YE AR I E R + ++E + E L++ I SKG Y+R+ DL + Sbjct: 128 GKKAYELARNNISFEIEPRLVKIFEYNILDFNYEKQILKIIIKVSKGFYVRSFAVDLAAR 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 + AH++ L R ++ + + +E + + Sbjct: 188 INNLAHLLSLVRTESGQFSINDAIEIEQVYDYWNN 222 >UniRef50_B6YSP4 Probable tRNA pseudouridine synthase B n=13 Tax=Archaea RepID=TRUB_THEON Length = 334 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 78/330 (23%), Positives = 137/330 (41%), Gaps = 58/330 (17%) Query: 4 PRRRGRDIN---GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 P +R +++ G++ LDKP G +S++ + VK+++N N+AGH G LDP +G+LP+ L Sbjct: 35 PEKRPMEMHMQFGIINLDKPPGPTSHEVVAWVKKLFNLNKAGHGGTLDPKVSGVLPVALE 94 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 AT+ Q LL + K Y + L +++ A + F G+I Sbjct: 95 RATRVVQALLPAGKEYVALMHLHGEVP-----------------EDKIYAVMKEFEGEII 137 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q P + SA+K R R VY + + +G ++ + GTYI Sbjct: 138 QRPPLRSAVK-----------------RRLRTRKVYYIEILEIDGKDVLFRVGVEAGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERM-VTLEHLRELVEQAEQQDIPAAELLDP 239 R++I +G LG GAH+ LRR + + VTL L + ++ I E Sbjct: 181 RSLIHHIGLALGVGAHMAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGI--EEYFRK 238 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS-------GAPLEGLVRVTEGENGKFI 292 + PM+ P V + ++ +G + G LV V ++ + + Sbjct: 239 AIQPMEKAVEHLPKVWIRDSAVAAVTHGADLAVPGIVKVHKGIKKGDLVAVMTLKD-ELV 297 Query: 293 GMGEI---------DDEGRVA-PRRLVVEY 312 +G+ +G ++ + Sbjct: 298 ALGKATMTSGEMLQKSKGIAVDVDKVFMPR 327 >UniRef50_Q820Z5 tRNA pseudouridine synthase B n=2 Tax=Tropheryma whipplei RepID=TRUB_TROW8 Length = 383 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 89/357 (24%), Positives = 147/357 (41%), Gaps = 57/357 (15%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 + VLL+DK G++S+ A+ K++ + + GH G LDP A G+L + G AT+ +Y+ Sbjct: 15 AMTQVLLVDKISGITSHTAVAKIRHLTGVKKIGHCGTLDPAACGLLIMGCGTATRLIRYM 74 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT----FSAEQLAAALDTFRGDIEQIPSM 125 + DKRY LG +T T D++G+I+ P + E + A + G I+QIPS Sbjct: 75 SNLDKRYIATITLGTQTTTDDSEGEIIYSAPKPSLDKITLESIGRAAEKLSGTIKQIPSA 134 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YSA+K G + Y ARQGI AR + V+ E N++ ++I CS GTY+R + Sbjct: 135 YSAIKVSGNRAYNLARQGIIPKLNAREVRVHWKFLGDFENNQVHVQITCSSGTYVRALAR 194 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPV----------------------------------E 211 D+G+ LG G H+ YL+RL++ + + Sbjct: 195 DMGKFLGVGGHLSYLKRLSIGPFHLHEIYREINKKEATMSERTPSGNTQGLTDNMAISDN 254 Query: 212 RMVTLEHLRELVEQA----EQQDIPAAELLDP------------LLMPMDSPASDYPVVN 255 ++ + E E L L + + + Y + Sbjct: 255 MAISESDKHDCTEPGINCTELGIKDTCTALREVHYTQGDTLSFTRLTALQALSRIYKPIE 314 Query: 256 LPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEY 312 + + G + G G V EN I + + G P ++ + Sbjct: 315 VSQKQADDLSCGRYISL-GIDSNGPVCAVCKEN--LIAVIQPVSAGLWRPETVLSDN 368 >UniRef50_D1AY31 tRNA pseudouridine synthase B n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AY31_STRM9 Length = 285 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 33/292 (11%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 +L+L+KP+ ++S +QKV++ N + GH G LDP+A G++ + +ATKFS YL+ Sbjct: 5 ILILNKPKDITSFSYIQKVRKEMNIKKIGHAGTLDPMAEGLMIVMANDATKFSDYLMKHS 64 Query: 74 KRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y V LG T+T D +G++ + + + + + + +QIP M+SA+K Sbjct: 65 KTYYVEMELGYETNTLDLEGEVTNKINHEINICLDDVKDIVKKYICKFKQIPPMFSAIKK 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 G KLY+ AR+GIE+ E R + + + I N + S GTYIR ++ D+G L Sbjct: 125 NGVKLYDLARKGIELELEGREVEITNIYDIAFSDNIISFRADVSSGTYIRALVRDIGRDL 184 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 + L R ++ + + + + ++ DY Sbjct: 185 NTYGTMTKLIREKINNFSLNDVNKKISIEDIF--------------------------DY 218 Query: 252 PVVNLPLTSSVYFKNGNP--VRTSGAPLEGLV-RVTEGENGKFIGMGEIDDE 300 + + NG + ++ N F+G+ EI+ + Sbjct: 219 KKLEVDNNLYKQLYNGMTKIIELKNISDNDKYLKIYF--NNVFVGIVEINKK 268 >UniRef50_B2KCA4 tRNA pseudouridine synthase B n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCA4_ELUMP Length = 235 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 113/226 (50%), Gaps = 2/226 (0%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE- 61 I+G+LL+DKP SS+D + +R + GH G LDP+ATG+L + + Sbjct: 1 MQNNEVAPISGILLVDKPSDWSSHDIINVARRSMGIRKIGHAGTLDPMATGLLILLVSRT 60 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIE 120 ATK L K Y IA LG TDT DA G I V F + G E Sbjct: 61 ATKLQNKFLKLSKTYEGIAELGSETDTWDAYGGITNTCEVPEFDLPTIHKHAKKLTGSFE 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 I +YSA K G+ ++ Y R+G V ITV+E I + ++ ++ S GTY+ Sbjct: 121 HIVPLYSAKKVNGRPMHRYMREGRIVEERKALITVHEWEEISYSKPNIKFTVNVSSGTYV 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 R++ LG +LGCG H+ LRR V + ++ +T+E LR L ++ Sbjct: 181 RSLAYMLGRELGCGGHLTRLRRTRVGDFDIKNAITVEELRSLPQEE 226 >UniRef50_Q2SSF2 tRNA pseudouridine synthase B n=4 Tax=Mollicutes RepID=TRUB_MYCCT Length = 292 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 75/300 (25%), Positives = 146/300 (48%), Gaps = 23/300 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ +L+KP+ +S+ + +VK+ N + GH G LD LATG++ + ATK S YLL+ Sbjct: 4 SGIFILNKPKNISTYQLINQVKKKLNIKKVGHCGTLDLLATGVVICLVNNATKISDYLLN 63 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRG-DIEQIPSMYSAL 129 ++K Y+V +L TD+ D +G I++ + P S +Q+ + + EQ P +YS++ Sbjct: 64 ANKAYQVKIKLFTLTDSYDGEGNIIQTQIPFDISLDQINKVISKYNNYSYEQYPPIYSSI 123 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDL 187 K GKKLY+YA +V ++R +T+++ + ++ E+ L++ CSKGTYIR++ D+ Sbjct: 124 KVNGKKLYQYALANQDVEIKSRKVTIFKTKLLNYDQKNYEIFLDVKCSKGTYIRSLAIDI 183 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 + L +V+ L R + + + ++ L L + Sbjct: 184 CKDLNTIGYVVELNRTLSGNFDINSAIDIKDLS-----------------WKHLTSIYDA 226 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 + + + K G + + + LV +++ E + + + + +R Sbjct: 227 VKINDFKVVKYHNILDVKQGKKIVLNNI-KDQLVFISD-EQNNILAVYQKYENNIFKVKR 284 >UniRef50_Q72GS9 tRNA pseudouridine synthase B n=4 Tax=Thermaceae RepID=TRUB_THET2 Length = 312 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 139/332 (41%), Gaps = 56/332 (16%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 + +DKP ++S+D +++ +R + R GHTG LDPLATG+L + E+TK +L D Sbjct: 3 LYAVDKPLHLTSHDVVEEARRRLSTRRVGHTGTLDPLATGLLLLVTNESTKLVPFLSGED 62 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y G T T DA+G I EE P F + L AAL F EQ+P +YSA+K G Sbjct: 63 KEYIAWVSFGATTPTLDAEGPISEEAPARFDRKDLEAALPRFLEVREQVPPLYSAIKVGG 122 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEG---------------------------- 165 K+ YE AR+G + RP+ E+ + + Sbjct: 123 KRAYEAAREGKPLALGPRPVRYLEVELLAFDPEPIPHPIAPSARGWRLAERRGRPVRLPR 182 Query: 166 -----NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 + + GTY+R DLGE LG A + L R V + +ER V L L Sbjct: 183 PLGAYPTAVVRLVVGPGTYVRAFARDLGEMLGTKAFLSGLVRTRVGRVGLERAVALSDLS 242 Query: 221 ELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 E +P +PVV L T + G P+ G Sbjct: 243 PEKAIPELDVLP------------------FPVVELSHTEARRVLEGMPLPIPAM---GY 281 Query: 281 VRVTEGENGKFIGMGEIDDEGRVAPRRLVVEY 312 V + + + + + + E D ++ RR+ + Sbjct: 282 VTLVDSKR-RLLAIAE-GDGFKLKIRRVFAKE 311 >UniRef50_C1H9D7 Centromere/microtubule-binding protein cbf5 n=5 Tax=Onygenales RepID=C1H9D7_PARBA Length = 796 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 79/318 (24%), Positives = 128/318 (40%), Gaps = 49/318 (15%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GV+ LDKP SS++ + +KRI + GH+G LDP TG L +C+ AT+ + Sbjct: 373 SGVINLDKPANPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQG 432 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K Y + RL + Q A AL+T G + Q P + SA+K Sbjct: 433 AGKEYVCVIRLH---------------DKLPGGEAQFARALETLTGALFQRPPLISAVKR 477 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 Q R I +L ++ + + C GTYIRT+ LG L Sbjct: 478 Q---------------LRIRTIHESKLFEFDNDRHLGVFWVSCEAGTYIRTLCVHLGLLL 522 Query: 192 GCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 G GAH+ LRR+ + MVTL + + Q + L ++ P++S + Sbjct: 523 GVGAHMQELRRVRSGAMDEMDGMVTLHDVLDA--QWMMDNNRDESYLRRVIRPLESLLTS 580 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEID---- 298 Y + + ++ G + G E +V +T I + ++ Sbjct: 581 YKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEIHEEVVLMTTKGEAIAIAIAQMSTVEL 640 Query: 299 ---DEGRV-APRRLVVEY 312 D G V +R ++E Sbjct: 641 STCDHGVVAKVKRCIMER 658 >UniRef50_D2MPT8 tRNA pseudouridine synthase B n=1 Tax=Bulleidia extructa W1219 RepID=D2MPT8_9FIRM Length = 280 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 86/295 (29%), Positives = 141/295 (47%), Gaps = 22/295 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++ + L++KPQGM+S D + K++++ + GHTG LDP A G+L + G+ TK Y + Sbjct: 1 MDAIYLINKPQGMTSFDVIAKMRKVLQMKKIGHTGTLDPEAGGLLIVLTGKFTKCIPYCV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG+ +DT D GQI++ER +A +L + +G QIP MYSA Sbjct: 61 KDHKHYIAQFELGKASDTEDVFGQIIQERKARKHTALELNEICSSMKGRYLQIPPMYSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K +GKKLYEYAR+G E+ R+ + + +L + E+E S GTYIRT+I D + Sbjct: 121 KIKGKKLYEYAREGKEMERKTVEVEISDLSVRHLHDDIYEMEAVVSSGTYIRTLIVDFAK 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG A + L+R+ + + + V L + + D Sbjct: 181 KLGELALMTSLKRVGIEHLSLNQSVPLADFDKTTKGIRLFDCVNPA-------------- 226 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 YP+V + + G + E +V + ++ + + ++ G Sbjct: 227 -YPLVEVKNPA--PILQGKKIALD--RNEEIVLLYHQQD--ILAAYQKENSGLYR 274 >UniRef50_C7PUC9 tRNA pseudouridine synthase B n=7 Tax=Bacteroidetes RepID=C7PUC9_CHIPD Length = 232 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 110/209 (52%), Gaps = 2/209 (0%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+L++KP +S D ++K++ A + GH G LDPLATG+L C G+ TK + Sbjct: 15 VVLINKPLKWTSFDIVRKIRNTTKA-KTGHAGTLDPLATGLLICCTGKMTKKINEYQAQE 73 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y +G T T D + + + +P+ + E + F G+++Q+P ++SA+K Sbjct: 74 KEYTGTFTIGATTPTYDLESEPTDFKPLDGITEELIHDTTKQFIGELQQLPPIHSAIKQN 133 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 GK +YE AR+G+EV E R I + E + + CS GTYIR++ +D G LG Sbjct: 134 GKPIYELARKGVEVKVEPRNIVIKEFEITNIALPVIHFRVVCSTGTYIRSLANDFGAALG 193 Query: 193 CGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 G ++ L R + + +E +E E Sbjct: 194 VGGYMSSLCRTRIGAFKLEDAWEIEKFVE 222 >UniRef50_Q46GC3 Probable tRNA pseudouridine synthase B n=9 Tax=Euryarchaeota RepID=TRUB_METBF Length = 338 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 77/292 (26%), Positives = 128/292 (43%), Gaps = 42/292 (14%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV+ +DKP+G +S++ VK I + AGH G+LDP TG+LP LG+ATK L S Sbjct: 43 GVVNIDKPKGPTSHEVAAWVKAILGVSTAGHAGSLDPKVTGLLPTLLGKATKAVPALRLS 102 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + +L + + + + F G I Q+P + SA+K Sbjct: 103 GKEYVCLLKLHKEMP-----------------QKLVRKVCEEFTGPIYQMPPIKSAVK-- 143 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 R R T+Y L + EG+ + + C GTYIR + D+G LG Sbjct: 144 ---------------RVIRIRTIYYLEVLEIEGSFVLFRVGCEAGTYIRKLCHDIGLALG 188 Query: 193 CGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYP 252 CG H+ LRR + E +VTL+ L++ ++ + ++MPM++ S P Sbjct: 189 CGGHMQELRRTKAGPFTEETLVTLQDLKDAYVLWKEDG--DESEIRRVIMPMETAVSHLP 246 Query: 253 VVNLPLTSSVYFKNGNPVRTSGAP------LEGLVRVTEGENGKFIGMGEID 298 + L ++ +G + G +G + G+ + + + + Sbjct: 247 KIILRDSAVDAICSGAALAVPGITSLDANLKKGELIALFTLKGELVALAKAE 298 >UniRef50_Q8WWH5 Probable tRNA pseudouridine synthase 1 n=26 Tax=Eukaryota RepID=TRUB1_HUMAN Length = 349 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 25/273 (9%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNAN----------------RAGHTGALDPLATG 53 ++GV + KP+G +S + L ++K A + GH G LD A G Sbjct: 67 SLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARG 126 Query: 54 MLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAAL 112 +L + +G TK +L KRY I LG+ TDT D+ G++ EE+P + E + L Sbjct: 127 VLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGIL 186 Query: 113 DTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREA-RPITVYELLFIRHEGNELELE 171 F G+I Q+P +YSALK G++L ++G V + RP+TVY + + + L+ Sbjct: 187 QKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLD 246 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV------ERMVTLEHLRELVEQ 225 + C G YIR+++ D+G++L A+V+ L R + + E T++ + + +E Sbjct: 247 VECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEH 306 Query: 226 AEQQDIPAAELLDPLLMPMDSPASDYPVVNLPL 258 L + S + L Sbjct: 307 CSSLFPAELALKKSKPESNEQVLSC-EYITLNE 338 >UniRef50_Q0SM48 tRNA pseudouridine synthase B n=22 Tax=Borrelia RepID=TRUB_BORAP Length = 282 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 83/295 (28%), Positives = 134/295 (45%), Gaps = 22/295 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG LL++K QG +S + L +K+ +N N GH G LD A+G+L +G+ TK + Y + Sbjct: 3 NGFLLINKEQGKTSFETLFPIKKYFNTNHVGHAGILDKFASGILIALVGKYTKLANYFMS 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y R G TDT D +G+IV + + E + L F G+I Q P +S++ Sbjct: 63 LDKEYVAEFRFGLETDTLDPNGRIVNKTDYIPNLEDIDLKLKDFVGEIYQSPPRFSSVHI 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELL--FIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G + Y+ A G + R + VY++ + L L+I CSKGTYIR+I DL Sbjct: 123 NGSRAYKLALNGKFFEIKKRRVNVYDIQRLSYDFSSSLLSLKISCSKGTYIRSIARDLAY 182 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 L A+V L+R V + +E ++L L+ ++S Sbjct: 183 SLNSCAYVSSLKRTKVGIFRLEDSTLCKNLS-----------------KASLISLES-LK 224 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 + V + + KNG V E ++ + G+ + + + D + Sbjct: 225 SFEKVCIDSSKINLVKNGAYVEIQININE--FKILKSREGEILAVIKGIDLNKYK 277 >UniRef50_A4E6U4 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6U4_9ACTN Length = 300 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 77/308 (25%), Positives = 121/308 (39%), Gaps = 29/308 (9%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 +L +DKP G +S+D + + +R + R GH G LDP+A+G++ + +G+AT+ L Sbjct: 2 LLAVDKPVGCTSHDVVSQCRRALHERRVGHAGTLDPMASGVMVVGVGQATRLLGMLTLDT 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTF---SAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y G T+T DA+G+ V V L G Q+P +SA+ Sbjct: 62 KSYVADISFGAETNTDDAEGEAVRTVAVANELRDPAYAREHLAAMLGPQMQVPPAFSAIS 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIIDD 186 G + Y+ AR+G V RP+ VY I + + SKGTYIR + D Sbjct: 122 VNGVRAYKSAREGNAVDLPPRPVEVYAADLIAVGGEGDTCVWTVAFSVSKGTYIRALARD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG AH+ LRR A + +E L L P+ + Sbjct: 182 LGRACESAAHISALRRTASGVVSIGACHAVEELS------------PESAAGFALDPIAA 229 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-----GLVRVTEGENGKFIGMGEIDDEG 301 + V+LP + G + A + + +G + I+ G Sbjct: 230 LGAT--RVDLPGNLADDLLCGRRIPVERALADFDALKAPFALVL--DGGLKALARIEG-G 284 Query: 302 RVAPRRLV 309 R + Sbjct: 285 RFVMEHVF 292 >UniRef50_UPI00004C24EE COG0130: Pseudouridine synthase n=1 Tax=Streptococcus pyogenes M49 591 RepID=UPI00004C24EE Length = 197 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 75/196 (38%), Positives = 110/196 (56%), Gaps = 8/196 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ L K GM+S+DA+ K++++ + GH G LDP G+LPI +G+AT+ +Y++ Sbjct: 2 INGIINLKKEAGMTSHDAVFKLRKLLQEKKIGHGGTLDPDVVGVLPIAVGKATRVIEYMI 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 ++ K Y LG T T DA G++V + + E + + TF G I Q P MYSA Sbjct: 62 EAGKVYEGQVTLGYSTTTEDASGEVVARSSLPAVLTEELVDQTMTTFLGKITQTPPMYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELL------FIRHEGNELELEIHCSKGTYIRT 182 +K G+KLYEYAR G V R R +T+ F ++ CSKGTY+RT Sbjct: 122 VKVNGRKLYEYARAGESVERPRREVTISLFERTSPLNFTEDGLCRFSFKVACSKGTYVRT 181 Query: 183 IIDDLGEKLGCGAHVI 198 + DLG LG +H+ Sbjct: 182 LAVDLGRALGVESHMS 197 >UniRef50_Q10KT9 Os03g0370500 protein n=6 Tax=Magnoliophyta RepID=Q10KT9_ORYSJ Length = 591 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 130/319 (40%), Gaps = 54/319 (16%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV+ LDKP SS++ + +KR+ + GH+G LDP TG L +C+ AT+ + + Sbjct: 108 GVINLDKPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGA 167 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y +AR ++A AL+ G + Q P + SA+K Sbjct: 168 GKEYVCVARFHAAV----------------PDTARVARALEALTGAVFQRPPLISAVK-- 209 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 190 R+ R T+YE + H+ + I C GTY+RT+ LG Sbjct: 210 ---------------RQLRVRTIYESKLLEHDADRHLAVFWISCEAGTYVRTLCVHLGLL 254 Query: 191 LGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG GAH+ LRR+ + MVT+ + + + + L ++MP++ + Sbjct: 255 LGVGAHMQELRRVRSGILGETDNMVTMHDVMDA--RWAMDNFNDESYLRRIVMPLEVLLT 312 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEID--- 298 Y + + ++ G + G E +V +T IG+ E+ Sbjct: 313 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIEVGEEVVLMTTKGEAIAIGIAEMTTAV 372 Query: 299 ----DEG-RVAPRRLVVEY 312 D G +R+V++ Sbjct: 373 MATCDHGAVAKIKRVVMDR 391 >UniRef50_Q6L1A0 Probable tRNA pseudouridine synthase B n=1 Tax=Picrophilus torridus RepID=TRUB_PICTO Length = 349 Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats. Identities = 74/295 (25%), Positives = 122/295 (41%), Gaps = 43/295 (14%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 ++NG +++DKP+G +S+ ++ I R GH G LDP +G+L + LG+ATK Sbjct: 2 SNLNGFIVVDKPKGPTSHQIDSWIRDITGEPRVGHIGTLDPGVSGVLVMALGKATKLIDI 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 + K Y + R D D D + + F G I QIP + SA Sbjct: 62 VHRESKEYVSVLR---TYDKYDHDS--------------IKSVFKEFTGKIYQIPPVRSA 104 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 V RE R +Y L + + + ++ C GTYIRT+ D+G Sbjct: 105 -----------------VSRELRIREIYNLELLEMDEKFVLFKVCCESGTYIRTLCTDIG 147 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LG G + LRR + TL+ + + + + + +L + +PMD Sbjct: 148 YVLGSGGQMAELRRTRTGPFDESMCHTLQEVSDAF---KLKSMGNEKLFKNIFIPMDFIF 204 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGA------PLEGLVRVTEGENGKFIGMGEI 297 YP V + T+ +G+ + +G P +G V E + + G + Sbjct: 205 IKYPKVIVKETALKNIAHGSDIYPAGIHAITGSPKKGDVVAVYTEKNELVATGTM 259 >UniRef50_D1PVQ5 tRNA pseudouridine synthase B n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PVQ5_9BACT Length = 232 Score = 237 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 67/219 (30%), Positives = 106/219 (48%), Gaps = 8/219 (3%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKFSQY 68 + +DKP MSS AL V+ + + + GH G LDPLATG+L +C G+ TK + Sbjct: 8 IFAIDKPYRMSSFGALAHVRYLLSRKLGRKVKIGHAGTLDPLATGVLVLCTGKCTKQIET 67 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 L K Y +LG TD+ D + + P + + + L F GDI+Q+P YS Sbjct: 68 LQAHTKEYTATLQLGATTDSYDREHTVNHTYPCRHITEDMVREVLKQFEGDIDQVPPTYS 127 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIID 185 A+K G + Y R G +V + I + ++ + + + + + C KGTYIR + Sbjct: 128 AVKVGGVRAYNMRRMGQDVELAPKRIRIDQIELTAFDAATHRMSIRVVCGKGTYIRALAR 187 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 D+G + GA + LRR V VE + + ++ Sbjct: 188 DIGRAMDSGAFLTELRRTRVGDITVEDCIDFNQFQAWLD 226 >UniRef50_Q0ZC46 Putative accessory gland protein (Fragment) n=5 Tax=Gryllus RepID=Q0ZC46_9ORTH Length = 238 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 11/225 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNAN----------RAGHTGALDPL 50 ++R +G ++KP+ +S AL+++K++ + + GH G LD Sbjct: 8 LNRREVHRLLTDGYFAVNKPKNWTSVQALEEIKKVLRKDIPTHFQPPVLKLGHGGTLDHT 67 Query: 51 ATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLA 109 ATG+L + +G K L DK+Y R G T+T + G+I EE + E Sbjct: 68 ATGVLAVGVGWGCKLLPIFLHGDKKYIAAGRFGIATNTYNETGKITEEMKYDHITEEIFE 127 Query: 110 AALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE 169 + L + G I Q P YSALKYQG+++ ++ R+G+++ + RP+T Y L + E Sbjct: 128 STLQKYTGKIYQTPPKYSALKYQGRRIGDWTREGMDIEMKPRPVTCYSLKSRKFRLPHFE 187 Query: 170 LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV 214 +E+ C G Y+R+++ D+G+ L AHV L R + E M+ Sbjct: 188 IEVACGGGFYVRSLVHDIGQALSSCAHVTTLHRTKHGPFMEEDML 232 >UniRef50_Q2GEU5 TRNA pseudouridine synthase B n=2 Tax=Neorickettsia RepID=Q2GEU5_NEOSM Length = 235 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 72/212 (33%), Positives = 108/212 (50%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 I G L LDK G+SS AL+ +KR + +AG+ G LDP+ATG+L I LG TK Sbjct: 9 SIEGWLSLDKESGISSFGALKLLKRKFGVKKAGYVGTLDPIATGVLVIALGRTTKLIPQF 68 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DS K Y G TDT D++G ++ + S + L +F G+ Q+P +SA+ Sbjct: 69 DDSFKEYEFAIEWGAETDTLDSEGAVLRNGGLIPSTSAILGVLPSFLGEQLQVPPKFSAI 128 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G + Y AR GIE + R + ++ + + H + L++ CSKGTY+R + D+ Sbjct: 129 HVNGHRAYSLARAGIEFNMQPRRVVIHSIECMNHSAGQSTLKVSCSKGTYVRALARDIAR 188 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 KL A V +RR + V L + + Sbjct: 189 KLESLAFVSKIRRTRSGIFNVTSGNKLSEITK 220 >UniRef50_A5IY15 tRNA pseudouridine synthase B n=2 Tax=Mycoplasma RepID=A5IY15_MYCAP Length = 288 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 70/301 (23%), Positives = 124/301 (41%), Gaps = 27/301 (8%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 L++KP+G SS + + + GHTG LDPLA+G+L + E TK Y+ ++ Sbjct: 2 FYLINKPKGCSSFAVINSFAKENKIKKIGHTGTLDPLASGLLLVATDEDTKLIPYIKHNN 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y + G++TDT D++G ++ V + EQIP YSA K G Sbjct: 62 KAYITTIQFGKQTDTYDSEGTVINHSEVKVGQSDVQKITSWLNSQSEQIPPSYSAKKVNG 121 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLGEKL 191 K YE AR+G + + + I V++ + E + + ++ SKG YIR++++DLG L Sbjct: 122 AKSYELARKGKSIELKPQSIKVFDSKVLSFNSELQQAVVYMNVSKGAYIRSLVNDLGIFL 181 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 A++ L R+ V + ++ + + Sbjct: 182 NTYAYMSELDRVKVGELDID----------------------LLKGKSFIDVSNYALFSL 219 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVE 311 P + KNG + + G + + G+ +D + + +R+ Sbjct: 220 PFYEPTYAEIRHLKNGISILNNKRIKNGEYILKTNQINW--GIVSVDSD-LIKVKRIFGN 276 Query: 312 Y 312 Sbjct: 277 R 277 >UniRef50_Q6KHH8 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma mobile RepID=TRUB_MYCMO Length = 287 Score = 233 bits (595), Expect = 6e-60, Method: Composition-based stats. Identities = 80/302 (26%), Positives = 134/302 (44%), Gaps = 32/302 (10%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + +LLL K + +SS + + K+ + GH G LDPLATG+L + E TK YL Sbjct: 1 MKMILLLRKTKNISSFNFINNFKKTKGFKKIGHCGTLDPLATGLLIVATDEDTKLIDYLD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y A+LG T T D++G+I+ + V F+ E+L L++F G +Q+P YSA Sbjct: 61 QKDKTYVARAKLGFETTTYDSEGEIINQSSNVKFTKEKLIEVLNSFIGLTKQMPPKYSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDL 187 K G + Y+ ARQ I+ I + ++ + + + N + E+ S+GTYIR++I D+ Sbjct: 121 KLNGIRAYDLARQNIDFELNEVEINITKIKLLSYNEDENYFDFEVVVSRGTYIRSLIYDI 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G KL A++ L R + +E D +L + Sbjct: 181 GIKLNSLAYMESLERTKIGNLFLE----------------------KNQDDKILNAKE-- 216 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 ++ L G + + + + IG G+I + ++ Sbjct: 217 IIQLEIIQLEKNQIENLSKG--LLIDLKNEDNFYALFWKDE--MIGFGQIL-NNVLKSKK 271 Query: 308 LV 309 L+ Sbjct: 272 LI 273 >UniRef50_Q2FRP0 Pseudouridylate synthase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FRP0_METHJ Length = 310 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 84/313 (26%), Positives = 136/313 (43%), Gaps = 54/313 (17%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 ++L+DKP+G SS+ V+ I + GHTG LDP +G+L I LG A + + L D Sbjct: 18 IILIDKPRGPSSHQVAAWVREITGVSSVGHTGTLDPPVSGVLVILLGRAVRLTTILHQDD 77 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y + RL G + S +LA ++ F G I Q P SA+K Sbjct: 78 KEYVALLRL---------QGDV--------SDAELAEVIEHFTGRIYQRPPKRSAVK--- 117 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 R R ++EL + +G + + C GTYIR++ +G G Sbjct: 118 --------------RALRIREIHELEMLGRDGRLVLFRVKCDSGTYIRSLCHHIGMACGV 163 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPV 253 G ++ LRR + + VTL LR+ VE+A D L ++ +P Sbjct: 164 GGAMVELRRTRSGPFSEKDCVTLHTLRDAVEKARAGD---DTYLRKIIRSPLEALHGFPR 220 Query: 254 VNLPLTSSVYFKNGNPVRTSG------APLEGLVRVTEGENGKFIGMGEID--------- 298 + + +++ +G + + G +E LV + G++ FIG+GE Sbjct: 221 IQMKESAADAICHGARLSSRGVVSHDTFQMEDLVVMLAGDD--FIGIGEALVSSSRIVPG 278 Query: 299 DEGRVAPRRLVVE 311 ++G V RLV++ Sbjct: 279 EKGLVVAPRLVMQ 291 >UniRef50_C3MXC6 rRNA pseudouridine synthase n=7 Tax=Sulfolobaceae RepID=C3MXC6_SULIM Length = 339 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 78/329 (23%), Positives = 134/329 (40%), Gaps = 57/329 (17%) Query: 4 PRRRGRDI---NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 P +R D+ N ++ LDKP G +S++ +K++ N N+AGH G L+P TG+LPI + Sbjct: 36 PEKRPIDVHIKNSIINLDKPPGPTSHEVAYWIKKMLNVNKAGHGGTLEPKVTGVLPIGIE 95 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 ATK Y+ K Y + ++ D E+L + +F G+I Sbjct: 96 NATKIMNYISKGGKEYVCVMQVHCEYD-----------------KEELTKIIKSFEGEIY 138 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q P + S++K R R ++Y++ + + + + C GTY+ Sbjct: 139 QRPPVRSSVK-----------------RRLRVRSIYDIEILDMDKKLVLFRVSCDSGTYM 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE-RMVTLEHLRELVEQAEQQDIPAAELLDP 239 R + D+G GCGAH+ LRR + +V L L E + ++ L Sbjct: 182 RKLCHDIGIIYGCGAHMRELRRTRSGIFTESTNLVKLHDLSEAIYL--YKNCKDETELRR 239 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA------PLEGLVRVTEGENGKFIG 293 +LMPM+ + P + + ++ G + G V V G+ + Sbjct: 240 VLMPMEYATCEMPKLIIEDSAVNALAYGAQLAVPGIVAYQNFKRNDTVAVLTL-KGELVA 298 Query: 294 MG---------EIDDEGRVAP-RRLVVEY 312 G E +G V R+ ++ Sbjct: 299 TGNALIDSKELENAKKGIVVNLSRVFMQR 327 >UniRef50_UPI0000D53150 tRNA pseudouridine synthase B n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D53150 Length = 230 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 66/217 (30%), Positives = 118/217 (54%), Gaps = 1/217 (0%) Query: 15 LLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDK 74 LL+DK +S D ++K+K + GH G LDPLATG+L +C G+ TK + + +K Sbjct: 13 LLVDKELDWTSFDVVKKIKNTIKCKKVGHAGTLDPLATGLLIVCTGKNTKIINEIQNENK 72 Query: 75 RYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 Y +G+ T + D + + + E + S + + ++F G+ Q P +SA+K G Sbjct: 73 EYSGQFTIGKTTPSHDLETEFINENDISDISDKVILRVSESFVGEQFQRPPKFSAVKVSG 132 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 ++ YEYAR ++ + + IT++ + I C+KGTYIR+I D G+KLGC Sbjct: 133 RRAYEYARDNKKIIIKEKKITIFSFDITSINLPNINFNITCTKGTYIRSIARDFGKKLGC 192 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD 230 GA + L+R + + V+ +++L +++ + ++ Sbjct: 193 GAVLTKLKRTKIGDFDVKNANKIDYLVSKLKREKIEN 229 >UniRef50_P33322 H/ACA ribonucleoprotein complex subunit 4 n=133 Tax=cellular organisms RepID=CBF5_YEAST Length = 483 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 125/320 (39%), Gaps = 54/320 (16%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GV+ LDKP SS++ + +KRI + GH+G LDP TG L +C+ AT+ + Sbjct: 59 SGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQG 118 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K Y I RL + L +L+ G + Q P + SA+K Sbjct: 119 AGKEYVCIVRLH----------------DALKDEKDLGRSLENLTGALFQRPPLISAVK- 161 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGE 189 R+ R T+YE I + C GTY+RT+ LG Sbjct: 162 ----------------RQLRVRTIYESNLIEFDNKRNLGVFWASCEAGTYMRTLCVHLGM 205 Query: 190 KLGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LG G H+ LRR+ + MVTL + + Q + L ++ P+++ Sbjct: 206 LLGVGGHMQELRRVRSGALSENDNMVTLHDVMDA--QWVYDNTRDESYLRSIIQPLETLL 263 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPL--------EGLVRVTEGENGKFIGMGEID-- 298 Y + + ++ G + G + +V +T + + ++ Sbjct: 264 VGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTV 323 Query: 299 -----DEGRVA-PRRLVVEY 312 D G VA +R ++E Sbjct: 324 DLASCDHGVVASVKRCIMER 343 >UniRef50_UPI0000E46C2D PREDICTED: similar to TruB pseudouridine (psi) synthase homolog 1 (E. coli) n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E46C2D Length = 280 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 123/270 (45%), Gaps = 49/270 (18%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVK--------------------------- 33 M R R +NG+ + KP G++S + +VK Sbjct: 6 MMRLSR----LNGLFAVRKPMGITSAKVVDRVKAALLRDLKKVETSADLAGEEQVCSALG 61 Query: 34 ----------RIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLG 83 R + GH G LD ATG+L I G TK L K YR RLG Sbjct: 62 CSDKQRVDGQRWIKLPKMGHGGTLDMNATGVLVIGCGRGTKLLSSYLQGGKVYRAQGRLG 121 Query: 84 QRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQ 142 + TDT DA G+ VE + L L++F GDI Q+P +YSALK G+++ + A + Sbjct: 122 RATDTMDASGKEVETAQFDHVTDSLLERCLESFVGDIFQVPPVYSALKVDGERMSDLAAR 181 Query: 143 GIEV-PREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLR 201 G +V P+ ARP+ VY L + + ++++HC G Y+R +I D+G+ LG A + L Sbjct: 182 GEDVQPKPARPVKVYSLHCQGFQPPDFDIKVHCGGGFYVRKLIHDVGKSLGTCAFMTGLC 241 Query: 202 RLAVSKYPVER------MVTLEHLRELVEQ 225 R + +E+ TL+ + +E+ Sbjct: 242 RTEQGYFKLEQHALPEEKWTLKDITRALEE 271 >UniRef50_A3MS77 Probable tRNA pseudouridine synthase B n=2 Tax=Thermoproteaceae RepID=TRUB_PYRCJ Length = 333 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 86/315 (27%), Positives = 135/315 (42%), Gaps = 52/315 (16%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 L+LDKP+G +S++ VK+I RAGH+G LDP +G+LP+ + E TK L +D Sbjct: 37 FLILDKPRGPTSHEVAAWVKKILGVERAGHSGTLDPKVSGVLPVAVAEGTKVLMALSRAD 96 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y +A+ E L L +G+I Q P + SA+K Sbjct: 97 KVYIAVAKFHG-----------------DVDVENLRRVLQELQGEIYQKPPLRSAVK--- 136 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 R+ R VY L + +G L++H GTY R +I DLGE LG Sbjct: 137 --------------RQLRTRRVYSLELLELDGRYAVLKMHVEAGTYARKLIHDLGEILGV 182 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPV 253 GA++ LRR+AVS + + VTL+ L + ++ L +L+P++ A P Sbjct: 183 GANMRELRRVAVSCFTEDEAVTLQDLADAYYIWKKYG--DDTYLRRVLLPIEEIARPLPK 240 Query: 254 VNLPLTSSVYFKNGNPVRTSGAPL------EGLVRVTEGENGKFIGMGE----------I 297 + + ++ NG P+ G G + G+ IG+G + Sbjct: 241 IWVRDSAVDALCNGAPLAAPGVAKFEHPFSRGDLVAYFTLKGELIGIGRALVDSEEVKKM 300 Query: 298 DDEGRVAPRRLVVEY 312 + R+V+ Sbjct: 301 EKGLVARTDRVVMPR 315 >UniRef50_B4U903 tRNA pseudouridine synthase B n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U903_HYDS0 Length = 283 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 85/301 (28%), Positives = 144/301 (47%), Gaps = 33/301 (10%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + KP G+SS+ + + + N +AGHTG LD A G++ I LG+ATK++QY Sbjct: 1 MDGFYIGYKPVGISSSKFVLDISKSLNT-KAGHTGTLDLEAEGIMIIALGQATKYTQYFN 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG +TDT D G ++++ V + E+L + ++ F+G I QIP +YSA Sbjct: 60 VLPKIYETKGMLGIKTDTQDISGNVIQKIEDVNITCEELKSTIEKFKGKITQIPPIYSAK 119 Query: 130 KYQGKKLYEYARQGIE--VPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 K GKK Y+ AR+ + + + VY + + E + S GTYIRT+I+D+ Sbjct: 120 KINGKKAYKLARKNQVQSIELKPITVNVYSIELLECNIPEFYTKAVVSTGTYIRTLINDI 179 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+ L GA + ++R AV K+ E + + ++ Sbjct: 180 GDTLKVGATTLIIKRTAVGKFGNESV-------------------------GKIYSIEDG 214 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P + L K+G ++ +G+ ++ E+G F G+ E+ D + R Sbjct: 215 LYFIPSLLLKDDIVRRLKHGKVIKYEA--KDGVYKLL-SEDGMFHGVVEVKDN-VLKALR 270 Query: 308 L 308 + Sbjct: 271 M 271 >UniRef50_UPI0001C31DBB tRNA pseudouridine synthase B n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31DBB Length = 295 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 87/326 (26%), Positives = 136/326 (41%), Gaps = 56/326 (17%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPICL 59 MS P +GV+L DKP+ ++S+D + +V+R R GH G LDP ATG+L + + Sbjct: 1 MSGPSGPLTPADGVILYDKPRDVTSHDIVYRVRRALPRKTRVGHAGTLDPFATGLLLVLV 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 G T+ ++L+ +K Y IAR G + T D++G+I E V L G + Sbjct: 61 GRGTRAQRFLMALEKSYETIARFGAVSTTGDSEGEISETGVVPDGDLVLP------TGLV 114 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q P YSAL+ G++ Y AR+G +V R + V+ +G I CS GTY Sbjct: 115 RQRPPAYSALRVDGERAYARARRGEDVELPEREVAVHAFEERWRDGARRAFGIRCSSGTY 174 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R+++ DLG+ A+ LRR A+ + V Sbjct: 175 VRSLVADLGD-----AYCEELRRTAIGPFDVADADP-----------------------E 206 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT---------------SGAPLEGLVRVT 284 ++P+ + P L + +G V AP VR+T Sbjct: 207 RIVPLGDALAFLPQRRLGEEEARRAGHGVAVADPEPPGPPDPPDPSSREPAPPAPYVRLT 266 Query: 285 EGENGKFIGMGEID--DEG--RVAPR 306 + I + E D+G + P Sbjct: 267 DAAG--LIAIAEPRRGDDGAPLLKPV 290 >UniRef50_A4WH37 Probable tRNA pseudouridine synthase B n=36 Tax=Archaea RepID=TRUB_PYRAR Length = 331 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 86/317 (27%), Positives = 140/317 (44%), Gaps = 52/317 (16%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 + ++LDKP+G SS++ VK+I RAGH G LDP +G+LPI + E TK L Sbjct: 35 HSFVILDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLPIAVAEGTKVLMALSR 94 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 SDK Y +A+ E+L A L F+G+I Q P + SA+K Sbjct: 95 SDKVYVAVAKFHG-----------------DVDEERLRAVLREFQGEIYQKPPLRSAVK- 136 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 R+ R V+ L + EG +++H GTY R II D+GE L Sbjct: 137 ----------------RQLRTRRVFSLELLELEGRYAVIKMHVEAGTYARKIIHDIGEVL 180 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 G GA++ LRR+AV+ + + VTL+ + + ++ L +L+P++ A Sbjct: 181 GVGANMRELRRVAVTCFTEDEAVTLQDVADAYYIWKKYG--DDTYLRSVLLPIEEIARHL 238 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPL------EGLVRVTEGENGKFIGMGE--------- 296 P + + ++ +G P+ G +G + G+ +G+G Sbjct: 239 PKIWVRDSAVDAVCHGAPLAAPGISKFEVPFSKGDIVAMFTLKGELVGIGRALVDSEEVK 298 Query: 297 -IDDEGRVAPRRLVVEY 312 ++ V R+V+ Sbjct: 299 KMERGAVVRTDRVVMRR 315 >UniRef50_P59883 tRNA pseudouridine synthase B n=1 Tax=Rhodopirellula baltica RepID=TRUB_RHOBA Length = 348 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 78/333 (23%), Positives = 141/333 (42%), Gaps = 41/333 (12%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNAN------RAGHTGALDPLATGMLPICLGEATKFS 66 G L KP G +S D + + +R + GHTG LDPLA G++ + +G A + + Sbjct: 11 GFLPCYKPPGATSRDLVNRAQRRLRGEFGLRKLKVGHTGTLDPLAEGLVLLAIGSAARLT 70 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSM 125 ++L KRY RLG +++ D + ++V + V +A ++ L F G +EQ P Sbjct: 71 PWVLQHGKRYLADFRLGVSSESGDLESELVTQTDVKLPTAAEIEQVLKDFHGVVEQTPPA 130 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA+K G++ ++ AR+G + R I + + I +E + L++ C GTY+RT+ Sbjct: 131 HSAIKVDGERAHKRARRGEDFEMPKRRILIDSVKLISYEPPMMRLDVRCGSGTYLRTLGM 190 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+ GC A + L R V ++ ++ + + + ++ + P + L P + Sbjct: 191 DVAAACGCAAVMTKLIRNEVGRFTLDDTLDCAFMFDDDDREKMSSEPMVKYLRPAI---- 246 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVR-TSGAPLEGLVRVTE------------------- 285 + P +NL + G + T AP E L Sbjct: 247 EGLTHMPAMNLDRQQIGMLQAGIRISGTPEAPSEPLPEAWIGCIDQVDTFDRNTDVLDCI 306 Query: 286 ---------GENGKFIGMGEIDDEGRVAPRRLV 309 G G+ + + + P R+ Sbjct: 307 GVDRSDGSSGPWGELVAILRPHGK-LWHPLRVF 338 >UniRef50_UPI000038E21C H/ACA RNA-protein complex component Cbf5p n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E21C Length = 351 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 80/304 (26%), Positives = 131/304 (43%), Gaps = 45/304 (14%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +ING +++DKP+G +S+ V+ I R GH G LDP +G+L + LG Sbjct: 1 MYASNSTPEEINGFIVIDKPKGPTSHQIDAWVREITGEKRVGHIGTLDPNVSGVLVMALG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 +ATK + + K Y + RL DT + + F G I Sbjct: 61 KATKLIDIVHERPKEYISVMRLYSTADT-----------------DNIMKVFKEFTGKIY 103 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+P + SA V R+ R T+Y + + + + + C GTYI Sbjct: 104 QLPPVRSA-----------------VSRQVRERTIYNMDVLEIQEKLILFRVKCESGTYI 146 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT+ D+G +G GA + LRRL+ ++ + TL+ L + V +Q D L D + Sbjct: 147 RTLCTDMGYVIGTGAQMADLRRLSTGQFNESHIHTLQELSDSVVLKKQGDT---SLFDNM 203 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP-------LEGLVRVTEGENGKFIG 293 ++PMD +D P V + T+ +G+ + SG V + G + + + Sbjct: 204 VIPMDFVFADSPKVVVKNTAIKNIMHGSDIYPSGIKALIGDIHKGSRVAIYSG-DNELLA 262 Query: 294 MGEI 297 G + Sbjct: 263 FGTM 266 >UniRef50_C1TML1 tRNA pseudouridine 55 synthase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TML1_9BACT Length = 319 Score = 230 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 86/319 (26%), Positives = 141/319 (44%), Gaps = 26/319 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNA-NRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +G L++DKP+G+ S ++ VKR R GH G LD A G+L + +G+AT+ +Y++ Sbjct: 11 DGFLIIDKPEGVRSTASVSAVKRALGRGVRVGHAGTLDSTAQGLLIVLVGKATRLCRYVM 70 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF--SAEQLAAALDTFRGDIEQIPSMYSA 128 D K Y I + G +T T D G I+ L + + +F G Q P SA Sbjct: 71 DLPKSYLGIVKFGVKTSTDDGTGDILSSMDDDPFIDRGSLESLVPSFLGIRMQRPPSISA 130 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDD 186 LK G++ + +R + RP+ + L + E + + C KGTYIR+I D Sbjct: 131 LKVDGRRAHLVSRSEKLMELPLRPVFITSLKVQDVFADKGEATIGVVCHKGTYIRSIARD 190 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G+ G GAH+ LRR++ + V V+ + +++ E+L L+P+D Sbjct: 191 MGDMSGYGAHLSSLRRISTGPFDVSDGVSFSEGMDCLDK---------EVLSQSLLPVDF 241 Query: 247 PASDYPVVNLPL-TSSVYFKNGNPVRTSGAPLEGL------VRVTEGENGKFIGMGEI-- 297 + Y + KNG P+ S R G + + Sbjct: 242 ISRAYRSYEITRHEDLGALKNGLPLPLSTLRPIKNDEAWCCSRAVVTGEG-LLSVCRFRF 300 Query: 298 -DDEGRVAPR-RLVVEYPA 314 DD + P L++E P+ Sbjct: 301 EDDRCYLVPETNLLMESPS 319 >UniRef50_Q1J0C1 tRNA pseudouridine synthase B n=3 Tax=Deinococcus RepID=TRUB_DEIGD Length = 312 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 87/319 (27%), Positives = 134/319 (42%), Gaps = 59/319 (18%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+ +DKP G++S+D + + +R R GHTG LDPLATG+L +C+ ++TK Q++ Sbjct: 3 VIPVDKPLGLTSHDVVNRARRARGTRRVGHTGTLDPLATGVLVLCVDDSTKLVQFMEADS 62 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y LG + T DA+G + E PV S E+ A L F G Q+P YSA++ Sbjct: 63 KEYLAWIALGGTSPTLDAEGPLTEVVPVSPPSEEEARAVLAGFVGPQAQVPPQYSAIQVG 122 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRH----------------------------- 163 G++ Y AR G + AR I ++ L + Sbjct: 123 GQRAYAVARAGGALDLPARNIVIHALELLGISNRMAESPRTFARSSEGWTPDPTGRTFTL 182 Query: 164 -----EGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH 218 E L + S GTY+R++ D+G LG AH+ L R V +Y + V++E Sbjct: 183 PEPLGEFPTLLVRASVSSGTYLRSLARDVGAALGVPAHLAGLVRTRVGRYDLADSVSVED 242 Query: 219 LRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA--- 275 L A + P LD P + + + G R++ Sbjct: 243 L------AGAEGFPNLAALD------------LPRMEADEPLARALRQGKRPRSAVVGRH 284 Query: 276 ---PLEGLVRVTEGENGKF 291 LV V +G+ + Sbjct: 285 VVTRDGELVAVVDGDGKEL 303 >UniRef50_Q73NP8 tRNA pseudouridine synthase B n=1 Tax=Treponema denticola RepID=TRUB_TREDE Length = 357 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 43/316 (13%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 + N ++ K G++S ++ VK+ + + GHTG LD A G+L + G+ T+ + Sbjct: 2 ELNKNLIIPFAKQAGLTSFASMSAVKKALSTKKVGHTGTLDLFADGLLVLLTGQLTRLAD 61 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYS 127 + K Y G TDT D +G+ V P+ S + L ++ +F G I Q P +S Sbjct: 62 IISAEKKTYEAWVEFGTETDTLDPEGEPVLTAPLP-SYKNLTESIPSFLGKILQRPPEFS 120 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLF--------IRHEGNELE---------- 169 A+K GK+ + R G ++ R I ++++ + + Sbjct: 121 AIKINGKRASDRIRSGEKIKIAEREIEIFKIELKGIITDSGLEFTEKDFTNINAELKIRY 180 Query: 170 --LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 + + CSKGTYIR+++ DL K A+V LRR AV + +E + L E Sbjct: 181 AHIVVECSKGTYIRSLVRDLARKASSCAYVRALRRTAVGNFKLEDAAGFDLLNNFSAAPE 240 Query: 228 QQDIPAAELLDP----------------------LLMPMDSPASDYPVVNLPLTSSVYFK 265 + ++LD + P + P + L F Sbjct: 241 NLFLKEKKILDAAAGKKFYKQKEIDFLEIMAKSIIFSPKTAENLKLPYLFLDRKYLNDFY 300 Query: 266 NGNPVRTSGAPLEGLV 281 NG ++ + V Sbjct: 301 NGKKIKFNWFLNTDEV 316 >UniRef50_B6YR70 tRNA pseudouridine synthase B n=12 Tax=Bacteroidales RepID=B6YR70_AZOPC Length = 226 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 7/217 (3%) Query: 14 VLLLDKPQGMSSNDALQKVKRI------YNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 +L LDKP +S D + KV+ + + GH G LDPLATG++ IC G+ATK + Sbjct: 8 ILYLDKPLYWTSFDLVNKVRHVISKFLGLKKIKVGHAGTLDPLATGVMIICTGKATKKIE 67 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMY 126 K Y +G T + D + I + + + L F G+IEQ P + Sbjct: 68 AFQHQTKEYIATIHIGATTPSFDLETPIDNIFETSHITRKLVEQTLSKFLGNIEQTPPTF 127 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 S+ K G K YE AR+ +V + + + ++ + ++ E+++ + CSKG+YIR + D Sbjct: 128 SSCKINGSKAYELARKNQKVELKPKLVFFEKIELLSYKPKEIQIHVVCSKGSYIRALTRD 187 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELV 223 +G + GA++ L R + ++ + +E+L +++ Sbjct: 188 IGITIHSGAYLTKLTRTRIGNITLDDCLKIENLDKML 224 >UniRef50_C9M6R3 tRNA pseudouridine synthase B n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6R3_9BACT Length = 303 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 81/273 (29%), Positives = 128/273 (46%), Gaps = 16/273 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYN-ANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +NGVL++ KP G+ S D L+ + R+ + GH G LD A+G L + LG AT+ S ++ Sbjct: 2 LNGVLVVRKPLGLRSTDCLRHLSRVLGRQQKIGHAGTLDSTASGALIVMLGRATRLSNFV 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 +D KRY + G TDT D +G+ + V E+L+ AL + G Q+P SA Sbjct: 62 MDLPKRYVASVQFGWETDTDDREGRPLGPETVPFLDDEKLSCALLSLLGTRLQVPPAVSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTYIRTIIDDL 187 +K G++ + AR G +V RP+TV + I E + L++ C +GTY+R++ DL Sbjct: 122 VKVAGERSHRLARGGYQVENAPRPVTVTSIRVIGSLEKSCRVLDVRCHRGTYVRSLARDL 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G G AH+ L R++V + E + + + + L P+ + Sbjct: 182 GRVTGWKAHLNGLERVSVGNFCAEGGLPPDEFS-------------PQTVQRALHPVTAV 228 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 A Y V + G P R P Sbjct: 229 ARYYARVCVSQDVERRLLCGLPQRLDFLPKIKF 261 >UniRef50_A7I5M0 Pseudouridylate synthase n=4 Tax=Methanomicrobiales RepID=A7I5M0_METB6 Length = 322 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 79/300 (26%), Positives = 129/300 (43%), Gaps = 45/300 (15%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +P R G++++DKP+G SS+ V + GH G LDP +G+L + LG A Sbjct: 13 KPAMPLRHGAGIIVIDKPRGPSSHQVAAWVGTMLGCP-VGHAGTLDPQVSGILLVMLGNA 71 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 + + LL DK Y + RL + D +++ A + F G I Q Sbjct: 72 VRLAPLLLKHDKEYICLMRLHKEVD-----------------RQRIDAMAEEFSGRIYQR 114 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P SA+K R R T+ +L + +G + ++ C GTYIR+ Sbjct: 115 PPRRSAVK-----------------RLLRIRTIKKLEILDVQGRLVLFKVECDAGTYIRS 157 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +G LG GAH+ LRR + + M TL L++ A D A LD +++ Sbjct: 158 LCHHMGLALGTGAHMQELRRTRSGAFDEQCMHTLHALQDACCAAAAGDRVA---LDSMIV 214 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNP------VRTSGAPLEGLVRVTEGENGKFIGMGE 296 +D+ D P V + T+ +G + + +V V + +FIG+G+ Sbjct: 215 SVDAAVPDLPAVTVRDTAIDALCHGAALAGVGVIDCDEFRKDQIVAVL-SQKREFIGLGK 273 >UniRef50_C5RLI7 tRNA pseudouridine synthase B n=1 Tax=Clostridium cellulovorans 743B RepID=C5RLI7_CLOCL Length = 229 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 21/237 (8%) Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 ++ K Y +LG TDT D +G++++ S ++ A+++F G+I+Q+P MYSA Sbjct: 1 MNGRKTYIATLKLGVETDTYDREGEVLKTLATEHLSEAEVKEAINSFIGEIKQVPPMYSA 60 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK QGK+LYE AR+G EV R R IT+Y++ + + +++ E+ CSKGTYIR++ D+G Sbjct: 61 LKVQGKRLYELAREGKEVERNERSITIYDIKILEIKVPDIKFEVVCSKGTYIRSLCFDIG 120 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 EKL CG + L R A S + E VTLE L E ++ ++ Sbjct: 121 EKLKCGGAMWDLERTASSSFKKENSVTLEELAVNYEN--------------HIISIEEAI 166 Query: 249 SDYPVVNLPLTSSVYFKNG----NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 ++ + NG NP + + RV + + +G+G + ++G Sbjct: 167 MEFSPLYYNEKIGNLLLNGVCLNNPNIIKNIEFDKIYRVY--KEKELLGLGMLQEKG 221 >UniRef50_B3TBA4 Putative TruB family pseudouridylate synthase (N terminal domain) n=6 Tax=root RepID=B3TBA4_9ARCH Length = 339 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 80/292 (27%), Positives = 133/292 (45%), Gaps = 45/292 (15%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++LLDKP G +S+ + K+I +AGH+G LDP TG+LP+ LG+ATK LL Sbjct: 37 GLILLDKPPGPTSHQVVAWAKKILEIPKAGHSGTLDPQVTGVLPLGLGDATKALGVLLFG 96 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y+ + RL S E+L L F GDI Q P SA Sbjct: 97 SKEYQGLGRLHLL-----------------PSKEKLDGILKEFCGDIYQRPPQRSA---- 135 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 V R+ R ++EL + + + + I C GTYIR +I D+GE LG Sbjct: 136 -------------VSRQTRIRKIFELELLEQKERLILIRITCESGTYIRKLIYDIGEVLG 182 Query: 193 CGAHVIYLRRLAVSKYPVER-MVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GA ++ LRR V+++ +VTL + + +++ + L L+ P+++ S+ Sbjct: 183 PGATMVELRRTRVNQFHENHPLVTLHQVADAFSDWKEK--KDSTKLLKLIHPIENALSEL 240 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGA-------PLEGLVRVTEGENGKFIGMGE 296 + + ++ +G + G + LV + + G+ + + + Sbjct: 241 KSIVIRDSAVDALCHGAQLAIPGILQISPNLQKDELVGIYT-QKGEVVALAQ 291 >UniRef50_Q9HIT4 Probable tRNA pseudouridine synthase B n=2 Tax=Thermoplasma RepID=TRUB_THEAC Length = 365 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 73/303 (24%), Positives = 126/303 (41%), Gaps = 45/303 (14%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 +ING ++LDKPQG +S+ V+ I + H G LDP TG+L + +G+A + Sbjct: 4 SNINGFVVLDKPQGPTSHQVDHWVREILGIEKVAHIGTLDPNVTGVLTMAIGKAVRLVDV 63 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 + +S K Y + R + + E++ F G I Q+P + SA Sbjct: 64 VHESPKEYVGVMRFYE-----------------DITEEEVRYYFKKFTGRIYQLPPVRSA 106 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 V R R TVY L + + + + C GTYIRT+ D+G Sbjct: 107 -----------------VARSLRIKTVYSLDLLEKKDRLVLFHVKCESGTYIRTLCTDIG 149 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 G G ++ LRR + + +R +TL+ +VE A + + +LL ++ M Sbjct: 150 YVSGKGGQMVDLRRTSTGPFSEDRCITLQDFAAMVELARKGE---DKLLRDHILDMTYAF 206 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAP-LEGLVR-----VTEGENGKFI--GMGEIDDE 300 DYP + + ++ +G+ + G ++G R E+ + G+ + Sbjct: 207 KDYPKIVVKRSAMRNIAHGSDLYAGGIKIIDGKFRKGERVAVISEDNDLVGTGIAMCSSD 266 Query: 301 GRV 303 Sbjct: 267 NIF 269 >UniRef50_B1L793 Probable tRNA pseudouridine synthase B n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=TRUB_KORCO Length = 325 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 84/330 (25%), Positives = 139/330 (42%), Gaps = 58/330 (17%) Query: 5 RRRGRDI-----NGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPIC 58 R + R I +G+++LDKP+G SS++ ++VKRI + GH G LDP +G+LPI Sbjct: 22 RPQERPIFLYLDHGLIILDKPKGPSSHEVTERVKRILEYPGKVGHCGTLDPKVSGVLPIV 81 Query: 59 LGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGD 118 LG ATK S+++ DK Y L ++L ALD F G Sbjct: 82 LGNATKLSKFISGYDKEYVGTLYLHG-----------------DVPIDELKGALDKFTGP 124 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 I Q P + SA+K R R VY + + EG +L + GT Sbjct: 125 IFQRPPVKSAVK-----------------RSLRVRRVYSIELLSSEGRFHKLRVRVESGT 167 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIR + D+GE LG G + LRR+ + + VTLE +++ + + + Sbjct: 168 YIRKLFFDIGEFLGVGGSMRDLRRIRSGIFTEKDCVTLEDIKDAYDSWRESG--DESKIR 225 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA------PLEGLVRVTEGENGKFI 292 +++P++ P + + ++ +G ++ G +G + G+ I Sbjct: 226 KVILPLEEAVRHLPKIYVKDSAVASLTHGASLKVKGICSLSRGIKKGSIVALMTLKGELI 285 Query: 293 GMGEI---------DDEGRVA-PRRLVVEY 312 +G D G A R+++ Sbjct: 286 AIGRALMDFDEMLSADSGVAASIERVIMPR 315 >UniRef50_A4G0N3 Probable tRNA pseudouridine synthase B n=28 Tax=Archaea RepID=TRUB_METM5 Length = 333 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 76/316 (24%), Positives = 127/316 (40%), Gaps = 52/316 (16%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP G +S++ V+ + N +AGH G LDP TG LP+ LG TK Sbjct: 31 GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + L DA E + F G I Q P + +A+K Sbjct: 91 PKEYVCLMHLH-----DDAK------------VEDIENIFKEFTGRIHQRPPLKAAVK-- 131 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 R R +YE+ + +G ++ C GTY+R ++DD+GE LG Sbjct: 132 ---------------RSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEALG 176 Query: 193 CGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYP 252 AH+ LRR + V L+ L + ++ E L L+ P++ Sbjct: 177 TSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDG--NEEELRKLVKPLEYGLQHLK 234 Query: 253 VVNLPLTSSVYFKNGNPVRTSGAPL------EGLVRVTEGENGKFIGMGEI--------- 297 + + ++ +G + +SG V + E G+ + +G+ Sbjct: 235 KIIVKDSAVDAVCHGATLYSSGVSKIEKGIGTDEVVLIETLKGEAVAVGKPLMNTKDMLK 294 Query: 298 DDEGRVA-PRRLVVEY 312 +EG V R+++E Sbjct: 295 TEEGEVVEITRVIMEP 310 >UniRef50_A9A5A3 Pseudouridylate synthase TruB domain protein n=2 Tax=Thaumarchaeota RepID=A9A5A3_NITMS Length = 332 Score = 223 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 81/298 (27%), Positives = 128/298 (42%), Gaps = 45/298 (15%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++LLDKP G +S++ + KRI + GH+G LDP +G+LP+ LGEATK LL Sbjct: 37 GIILLDKPPGPTSHETVAWTKRILKLPKIGHSGTLDPQVSGVLPLGLGEATKALGVLLFG 96 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + R+ S E+L +++ G+I Q P SA Sbjct: 97 PKEYHALGRVHSL-----------------PSKEKLHEVIESLTGEIYQKPPQRSA---- 135 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 V R+ R T+YE + + L + C GTYIR + DLGE LG Sbjct: 136 -------------VVRQTRTRTIYEFEVLEQKERLLLTRVLCEAGTYIRKLYYDLGEILG 182 Query: 193 CGAHVIYLRRLAVSKYPVER-MVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GA +I LRR V ++ +VTL L E++ L ++ P++ S+ Sbjct: 183 PGATMIELRRTRVDQFRETDGLVTLHELANAFALWEEK--KDDSKLKSMIQPVEHALSEL 240 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGA-------PLEGLVRVTEGENGKFIGMGEIDDEGR 302 V + ++ +G + G +V + + G+ + + E G+ Sbjct: 241 KSVVIRDSAIDAMCHGAQLAIPGILQISPSLNKGDIVGIYT-QKGEAVALAEATMSGQ 297 >UniRef50_A6Q784 tRNA pseudouridine synthase B n=8 Tax=Epsilonproteobacteria RepID=TRUB_SULNB Length = 277 Score = 223 bits (569), Expect = 5e-57, Method: Composition-based stats. Identities = 65/213 (30%), Positives = 107/213 (50%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N + +++KP +SN + VKR YN + G +G LDP ATG L + G+ TK QYL Sbjct: 1 MNRLFVVNKPIFRTSNGYMGYVKRKYNTKKVGFSGTLDPFATGCLIVATGQYTKLFQYLN 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y+ LG + + D + FS + + L +F+G++ P +SA K Sbjct: 61 KTPKSYKATLWLGANSPSLDIEKVDSIREVAPFSQKTIEEVLQSFKGELTYYPPRFSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GK+ YE AR+G E+ + T+YE+ I + + E S+GTYIR++ + ++ Sbjct: 121 VNGKRAYELAREGKEIDLKQITSTIYEITLINYNHPFIHFEATVSEGTYIRSLGALIADR 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELV 223 L A + L R+ ++ E L+ L Sbjct: 181 LRVDATLSSLHRIHEGQFHYENEKALDPFTHLA 213 >UniRef50_B0R686 Probable tRNA pseudouridine synthase B n=10 Tax=Halobacteriaceae RepID=TRUB_HALS3 Length = 301 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 80/302 (26%), Positives = 126/302 (41%), Gaps = 49/302 (16%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV+ LDKP G S++ ++ + +A H G LDP TG LP+ G AT+ + LL+ Sbjct: 19 GVVNLDKPPGPSAHQVSAWIRDLVGVEKAAHAGTLDPKVTGCLPVLTGTATRIAPALLEG 78 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + L D +I L ++ F G+I Q P SA+ Sbjct: 79 FKEYVAVLELH------DDPPRI------------LPDVIEAFTGEIYQKPPKKSAV--- 117 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 AR+ R TVY+L + +G ++ L I C GTYIR + D+G LG Sbjct: 118 -------ARR-------LRTRTVYDLDVLDVDGRQVLLRIRCESGTYIRKLCHDIGRALG 163 Query: 193 CGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD-----IPAAELLDPLLMPMDSP 247 AH+ +LRR A + + +VTL L + V D A+ L + P + Sbjct: 164 TNAHMGHLRRSATTPFDDTDLVTLHDLADAVAWLRDTDDTEPPDAPADALRAAVQPAERA 223 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSG---------APLEGLVRVTEGENGKFIGMGEID 298 + P + + +++ G PV G P +G + G + +G + Sbjct: 224 LTHLPRLTIADSAAHEVATGAPVYAPGVIDTTALPTPPADGALVACYTAGGTAVCLGRLV 283 Query: 299 DE 300 + Sbjct: 284 GD 285 >UniRef50_B0VFC4 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFC4_9BACT Length = 265 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 76/281 (27%), Positives = 122/281 (43%), Gaps = 20/281 (7%) Query: 32 VKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDA 91 +++I + + GHTG LDP ATG+L CLG T+ + L + DK Y LG +T T D Sbjct: 1 MRKITGSKKIGHTGTLDPFATGLLICCLGSYTRLAGLLEEKDKTYLARMILGIKTATGDP 60 Query: 92 DGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREAR 151 +G I++ P+ +L R E YSA+K GK+ YE AR+G + R Sbjct: 61 EGDIMQTAPIPEFVSKLDVLAKKARQLTELPVPAYSAVKVNGKRAYELARKGEKFNLPKR 120 Query: 152 PITVYELLFIRHEGN---ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKY 208 P+ + E+ F+ E N EL KGTYIR + + L E+L A+ +LRR ++ Sbjct: 121 PVQIKEVEFLPWEPNKSDELSYRCKVGKGTYIRALSEWLAEQLNTIAYTTFLRRESIGNI 180 Query: 209 PVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGN 268 ++ V+L+ L + Q + DY + L NG Sbjct: 181 TLQDAVSLDDLTKDNWFRYQ-------------LSYKKVFPDYTCLKLNADDFAKVMNGM 227 Query: 269 PVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 + S E + + + +G+ + P ++ Sbjct: 228 DIAHSNENNEKYILL---KEENICAIGQRM-NNYIHPLMVL 264 >UniRef50_D0JB32 tRNA-pseudouridine synthase I n=1 Tax=Blattabacterium sp. (Blattella germanica) str. Bge RepID=D0JB32_BLASB Length = 237 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 10/211 (4%) Query: 12 NG-VLLLDKPQGMSSNDALQKVKRIY-------NANRAGHTGALDPLATGMLPICLGEAT 63 NG +LL+DKP G +S + ++K+K + GH G LDPLATG+L I G+ T Sbjct: 10 NGKILLIDKPWGWTSFEIVKKIKSFILTTIPKKGNLKIGHAGTLDPLATGLLIILTGKYT 69 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQI 122 K + + K Y I +LG T + D++ + + + + + F G+I+Q Sbjct: 70 KKVDDIQNYKKTYTGIIKLGCETLSFDSETEEYNFSSISHITPQLIRKTSQKFVGEIDQY 129 Query: 123 PSMYSALKYQGKKLYEYARQGIEV-PREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 P +SALK +GK+ YEYAR+G ++ ++R + +Y+ ++ ++ I C KGTYIR Sbjct: 130 PPSFSALKTKGKRFYEYARKGEKINSMKSRRVKIYQFHILKIGIPYIKFFIECGKGTYIR 189 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVER 212 ++ D G+ L G +++ LRR + + + Sbjct: 190 SVAQDFGKALKSGGYLLSLRRERIGNFSIND 220 >UniRef50_Q98Q19 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma pulmonis RepID=TRUB_MYCPU Length = 282 Score = 220 bits (560), Expect = 6e-56, Method: Composition-based stats. Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 30/296 (10%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 L+ K +G+SS A++ N + GH+G LDP ATG+L + E TK Y+ Sbjct: 2 FYLIYKEKGISSFKAIKDFAWQNNIKKIGHSGTLDPEATGLLLLASDEDTKLLDYVDKKF 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K YR LG ++ + D+ G+I+ + + + F G QIP ++SA K G Sbjct: 62 KSYRATMILGLQSQSFDSQGKIINSSNLKVDNLTIEKTIKNFVGPFVQIPPIFSAKKING 121 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 K+ YEYARQG E+ +A+ + V + + + ++ + S+GTYIR++I+ +G +L Sbjct: 122 KRAYEYARQGSEISMKAQEVFVKSIEIEKIDFPKVIFKAKVSRGTYIRSLINQIGLELKT 181 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPV 253 A + L R+ +S + + L D V Sbjct: 182 YALMDDLERIELSGLSKNDLGVVSDLD---------------------------IIDLEV 214 Query: 254 VNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 ++L + G S +G K +G+ +I+ + +AP ++ Sbjct: 215 LSLEKHEILTLAKGQK--FSKDLADGKYAFIYKNTKKILGICKIESK-IIAPIKIF 267 >UniRef50_O44081 H/ACA ribonucleoprotein complex subunit 4 n=74 Tax=Eukaryota RepID=DKC1_DROME Length = 508 Score = 219 bits (559), Expect = 8e-56, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 126/319 (39%), Gaps = 54/319 (16%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G + LDKP SS++ + +K+I + GH+G LDP TG L +C+ AT+ + + Sbjct: 88 GFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSA 147 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y I +L ++ ++ L+ RG + Q P + SA+K Sbjct: 148 GKEYVAIFKLHGAVESV----------------AKVRQGLEKLRGALFQRPPLISAVK-- 189 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 190 R+ R TVY+ + ++ + C G+YIRT+ LG Sbjct: 190 ---------------RQLRVRTVYDSKLLDYDETRNMGVFWVSCEAGSYIRTMCVHLGLV 234 Query: 191 LGCGAHVIYLRRLAVSKYPVER-MVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG G ++ LRR+ MVT+ + + + ++ +L ++ P++ Sbjct: 235 LGVGGQMLELRRVRSGIQSERDGMVTMHDVLDAM--WLYENHKDESMLRRVIKPLEGLLV 292 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEID--- 298 ++ + + +S G + G + +V T + + + Sbjct: 293 NHKRIIMKDSSVNAVCYGAKITLPGVLRYEDGIEIDQEIVICTTKGEAICLAIALMTTAT 352 Query: 299 ----DEGRV-APRRLVVEY 312 D G V +R+++E Sbjct: 353 MASCDHGVVAKIKRVIMER 371 >UniRef50_Q3B200 tRNA pseudouridine synthase B n=12 Tax=Chlorobiaceae RepID=TRUB_PELLD Length = 289 Score = 218 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 78/211 (36%), Positives = 113/211 (53%), Gaps = 6/211 (2%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYN----ANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 LLLDKP +S D + K++ Y + GH+G LDP ATG+L + G TK L Sbjct: 17 FLLLDKPLDWTSFDVVAKIRNTYKRGGLKRKVGHSGTLDPKATGLLILATGRKTKEIASL 76 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSA 128 DK Y + +LG RT + D + + P + + AA F G Q P M+SA Sbjct: 77 EGLDKEYLAVIKLGARTASHDVETPETDHTPAGHITLAMVRAAALAFVGPRLQQPPMHSA 136 Query: 129 LKYQGKKLYEYARQGIEV-PREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 ++GK+LY AR+G EV R+A+ I +++ +G + + SKG+YIR I D+L Sbjct: 137 SWHEGKRLYALARKGEEVKERKAKEIVIHQFEVTHMQGPLVYCRLLVSKGSYIRVIADEL 196 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEH 218 G LG GA++ LRR AV Y VE +++E Sbjct: 197 GMALGVGAYLAGLRRTAVGPYRVEDAMSVED 227 >UniRef50_A7ANK1 tRNA pseudouridine synthase, putative n=1 Tax=Babesia bovis RepID=A7ANK1_BABBO Length = 282 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 82/242 (33%), Positives = 118/242 (48%), Gaps = 28/242 (11%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNAN-------------RAGHTGALDPLATG 53 ING+L + KP ++SNDA Q VK+I + GH G LD A G Sbjct: 28 HNTPINGILNIYKPVMITSNDACQMVKKIIIDEMFKRKTIINKPKIKVGHGGTLDMHAEG 87 Query: 54 MLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSD-----------ADGQIVEERPV- 101 +L I +G TK Y L DK Y I LG TDT D A G +++E P Sbjct: 88 VLAIGIGNGTKMLPYYLKGDKIYEAIGILGFETDTLDVNVSCSRTNIHAQGNVMKEEPWE 147 Query: 102 TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI 161 + E L A+++ G +Q+P MYS+ KY GK L EYA + + V +A P+T++ + I Sbjct: 148 HVTQEALNDAINSMSGTYDQLPPMYSSKKYHGKTLREYAIKKLPVVLKATPVTIHSIRRI 207 Query: 162 R---HEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH 218 E + + CS GTY+R++I D+ KLG A + L R + +E + L+ Sbjct: 208 HELTLELPKFAIRTKCSSGTYVRSLIRDIAYKLGTVATMCSLVRTSKQNLAIEDAIRLDD 267 Query: 219 LR 220 L Sbjct: 268 LD 269 >UniRef50_Q609C2 tRNA pseudouridine synthase B n=1 Tax=Methylococcus capsulatus RepID=TRUB_METCA Length = 224 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 95/170 (55%), Positives = 124/170 (72%), Gaps = 1/170 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVLLLDK GM+SN ALQ+ +++ + +AGHTG+LDPLA+G+LP+C EATK S YLL Sbjct: 9 LSGVLLLDKGSGMTSNSALQRARKLLDMRKAGHTGSLDPLASGILPLCFNEATKLSSYLL 68 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 DSDKRYRV+ARLG TDT DADG++ PV L L F G I Q+P M+SAL Sbjct: 69 DSDKRYRVLARLGVTTDTGDADGEVRLRTPVPALDEPALLTVLAGFTGPILQVPPMFSAL 128 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 K++GK+LYE AR+G+EV R RP+TV+E+ + LEL++HCSKGTY Sbjct: 129 KHRGKRLYELARKGVEVERPPRPVTVFEIELAGRGADYLELDVHCSKGTY 178 >UniRef50_UPI00016A95FF tRNA pseudouridine synthase B n=1 Tax=Burkholderia pseudomallei DM98 RepID=UPI00016A95FF Length = 198 Score = 216 bits (550), Expect = 9e-55, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 109/207 (52%), Gaps = 18/207 (8%) Query: 110 AALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE 169 AAL F G+I Q+P MYSALK GK LYEYAR G V RE R +T+ L + ++ Sbjct: 1 AALARFVGEIVQVPPMYSALKRDGKPLYEYARAGQTVEREGRTVTIRALALVSCALPDVT 60 Query: 170 LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 + CSKGTY+RT+ +D+GE LGCGAH+ LRR V +E VTL+ L + Sbjct: 61 FRVTCSKGTYVRTLAEDIGEALGCGAHLTMLRRTGVGPLTLEHAVTLDALDAATQDER-- 118 Query: 230 DIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT------SGAPLEGLVRV 283 D L P+D+ S +P V L + F +G ++ A G VRV Sbjct: 119 --------DARLAPVDALLSTFPCVKLDAALATRFLHGQRLKLSELAARPDAAEGGRVRV 170 Query: 284 TEGENGKFIGMGEIDDEGRVAPRRLVV 310 + ++ + +G+ EG +AP RLVV Sbjct: 171 YDADD-RLLGVARAS-EGVLAPERLVV 195 >UniRef50_Q4N5B0 TRNA pseudouridine synthase, putative n=1 Tax=Theileria parva RepID=Q4N5B0_THEPA Length = 264 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 66/221 (29%), Positives = 107/221 (48%), Gaps = 17/221 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L + KP G+SS K+K I N N + G + +LP +G+ TK + L Sbjct: 30 SGLLNVYKPYGVSSTYVCNKIKNIINENFPKNKGCV-----MILPFGIGDGTKILESYLK 84 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y G TDT+D G+I+ + E L A+ + +G Q YSA K Sbjct: 85 GDKEYICTGTFGFETDTNDILGKIIHTSNWEYITDEMLEKAIRSLKGFQVQESPTYSAKK 144 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG-NELELEIHCSKGTYIRTIIDDLGE 189 ++G +YEYA I+VP ++ + + ++ I++E L +HCS GTYIR+++ D+G Sbjct: 145 HKGIPMYEYALNNIQVPSKSSLVHIKDIYRIKNEELPNFSLFVHCSGGTYIRSVVRDIGR 204 Query: 190 KLGCGAHVIYLR----------RLAVSKYPVERMVTLEHLR 220 +L A + L R + ++ + LE L Sbjct: 205 RLNSRATMASLVIKYCKILSQIRTKKLNFHIKDSLKLEDLT 245 >UniRef50_A7ZE50 tRNA pseudouridine synthase B n=3 Tax=Epsilonproteobacteria RepID=TRUB_CAMC1 Length = 273 Score = 213 bits (544), Expect = 4e-54, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 100/202 (49%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N + + +KP GMSSN L ++KR Y +AG +G LDP A+G L + G TKF ++L Sbjct: 1 MNAIFVANKPAGMSSNHFLGRLKRKYGVKKAGFSGTLDPFASGCLIVAFGSYTKFFRFLD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 S K Y LG + + D + + E+L A G I IP +SA Sbjct: 61 KSPKVYEATIWLGASSPSMDNENITEISNVKELNLEKLEAIRGELIGKISYIPPKFSAKH 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y+ AR G E + + +YE + + L L + S+G+YIR+ + G+K Sbjct: 121 VNGTRAYKLARSGEEFELKPEIMEIYESEILNYSHPFLTLRLSVSEGSYIRSYAEIFGQK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVER 212 +G + L+R++ K+ E Sbjct: 181 VGYNVTLSSLKRVSEGKFRYEN 202 >UniRef50_A0YZZ8 TRNA pseudouridine synthase B (Fragment) n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YZZ8_9CYAN Length = 249 Score = 213 bits (542), Expect = 8e-54, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 105/230 (45%), Gaps = 18/230 (7%) Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K YR R G T T D +G+ + + EQ+ A L F G IEQIP YSA++ + Sbjct: 3 KAYRAKIRFGMTTTTDDLEGETLTTHQITELKLEQIQAVLPRFLGKIEQIPPRYSAVQVE 62 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDDLGE 189 GK+LY+ ARQG V R + V+ L + E ELELEI C GTYIR+I DLGE Sbjct: 63 GKRLYDLARQGKVVEVPKRTVEVFNLEVLGWNCGEFPELELEIACGAGTYIRSIARDLGE 122 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 L G + +L R S + + +T+E L ++Q Q L+P Sbjct: 123 MLNTGGTLAHLVRTHSSGFDLTNSLTIEALESQIQQDTFQ-----------LIPASIALK 171 Query: 250 DYPVVNL-PLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEI 297 + L + + G + S + RV NG +G+G+ Sbjct: 172 HLEAITLSSDEKAKRWCQGQRIVCESENSTPSIFRVYH-PNGLLLGLGQR 220 >UniRef50_B2S4C6 tRNA pseudouridine synthase B n=2 Tax=Treponema pallidum RepID=TRUB_TREPS Length = 366 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 76/350 (21%), Positives = 137/350 (39%), Gaps = 61/350 (17%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 + ++ K G++S AL +V+R+ + GHTG LD A G+L + +G TK + + Sbjct: 8 DAIVPFAKVSGLTSFAALAQVRRLLGVKKVGHTGTLDRFADGLLLLLVGGFTKLAPVMTR 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 +K Y + G +TDT D +G +V + + ++ AAL F G I+Q+P YSALK+ Sbjct: 68 LEKSYEARIQFGVQTDTLDPEGAVV-RCSLFPTFARVRAALPHFTGSIDQVPPEYSALKF 126 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE------------------------ 167 G + + R+G V +AR + V++L + E + Sbjct: 127 GGVRASDRVRRGEAVCMKARRVFVFDLQVLGCEADLGEFKKTQAGRGAAIADLDLTRVRA 186 Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 + L + CS G Y+R + D+ G A+V +LRR + + + + + L E Sbjct: 187 VTLYVRCSAGFYVRALARDIAAACGSCAYVSHLRRTRIGPFDLAQAAGVSRLGSWTWGKE 246 Query: 228 QQDIPAA-----------------------------ELLDPLLMPMDSPASD---YPVVN 255 + AA + ++ D ++ + Sbjct: 247 RASCGAACFDVGAPPPPSSGGVATDSVSFGCEDLTVREIKQAVVSCDVDFANRIGLTACS 306 Query: 256 LPLTSSVYFKNGNPVRTSGAPLEGLV----RVTEGENGKFIGMGEIDDEG 301 + + F +G +R G R G+ +G+ G Sbjct: 307 VHAQYASRFLHGERIRACWFQSFGTRRPGERALVFSEGRCLGLIRKAANG 356 >UniRef50_B0SH20 Pseudouridylate synthase, N-terminal subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SH20_LEPBA Length = 309 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 83/319 (26%), Positives = 135/319 (42%), Gaps = 30/319 (9%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 D +G L + KP G++S+D + K KR+ GHTG LD A G+L + G+ T FSQ Sbjct: 3 KSDQSGFLFVYKPPGITSSDLVLKTKRLLGQKSVGHTGTLDRFAEGLLVLPCGDYTTFSQ 62 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQI-VEERPV-------TFSAEQLAAALDTFRGDI 119 L DK Y +G RTD+ D DG + +E R F E+L L + Sbjct: 63 VFLGKDKTYLAEVVVGLRTDSGDPDGVVEIETRESSRVEFVSRFPTERLETELKSLTEQK 122 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q SALK GK+ + R+G V + R IT++ ++ I+ IH S GTY Sbjct: 123 TQKAPKISALKVGGKRQSDLFREGTFVEEKERNITIHSVVDIQRTETGFSFRIHVSSGTY 182 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR II DL +K G + L R ++ +Y ++ + LE + + + ++ P Sbjct: 183 IRKIILDLSDKWGIPLSLGRLVRESIGEYGLDGVKPLEEITKADLRTWKEVFP------- 235 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL-VRVTEGENGKFIGMGEID 298 PV + +G + + L + + + + + Sbjct: 236 -----------LPVRIVDEAERKAVVHGGYIWDKLPKADSLGFYILDSDETTILAWCSYE 284 Query: 299 DEGRVAP---RRLVVEYPA 314 ++ P R++ + A Sbjct: 285 EKPAHIPYRYRKVFFDPSA 303 >UniRef50_P60346 Probable tRNA pseudouridine synthase B n=3 Tax=Archaea RepID=TRUB_NANEQ Length = 348 Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 73/302 (24%), Positives = 125/302 (41%), Gaps = 45/302 (14%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+ LDKP G +S+ + V+ I +AGH G LDP TG+LPI +GEATK Q LL + Sbjct: 60 VINLDKPSGPTSHQVVAWVRDIVGV-KAGHGGTLDPKVTGVLPIAIGEATKVLQTLLIAG 118 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y + L + S + + + F G I Q P + SA+ Sbjct: 119 KEYVALMHLHKE-----------------VSEKDIIKVMSKFVGTIIQTPPLRSAV---- 157 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 + R VY + I +G ++ + G YIR +I D+G KLG Sbjct: 158 -------------KKRPRKKKVYCIKIIEIDGKDVLFRVSTQGGVYIRKLIHDIGVKLGV 204 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPV 253 GAH+ LRR+ + V L+ + + + +++ E + + +P++ Sbjct: 205 GAHMQELRRIKSGPFHENNSVYLQDIVDSLYFWKEEG--NEEYIRKVFLPVEEAVKHLKK 262 Query: 254 VNLPLTSSVYFKNGNPVRTSG-------APLEGLVRVTEGENGKF-IGMGEIDDEGRVAP 305 + + ++ +G + G LV + + IG+ +D + + Sbjct: 263 IYILDSAVAAIVHGANLAVPGIAKLYSNIKKGDLVSIHTLKGELVAIGIALMDSKEMLEK 322 Query: 306 RR 307 +R Sbjct: 323 KR 324 >UniRef50_Q8I715 tRNA pseudouridine synthase, putative n=7 Tax=Plasmodium RepID=Q8I715_PLAF7 Length = 560 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 15/223 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNAN-----------RAGHTGALDPLATGMLPICLGE 61 G L + KP + S +K+K+I + GH G LDP A G+L I + + Sbjct: 327 GFLNIYKPVKLYSMRVCEKIKKILKDYFYKLNKKKVNIKVGHGGTLDPFAEGVLIIGIQQ 386 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV---TFSAEQLAAALDTFRGD 118 ATK L K+Y ++ G TDT D +G+I++E V + + L F G Sbjct: 387 ATKKLSDFLKCYKKYLALSIFGYETDTLDREGKIIKEEHVIHKKLKKQDILTNLQKFIGH 446 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKG 177 I+Q P +YSA +++G +LYEYAR+ I V + + + ++ + + L+L IHCS G Sbjct: 447 IKQYPPIYSAKRFKGLRLYEYARKNISVQIKPCNVHIKDIQYYKEIDLPFLDLYIHCSGG 506 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 TYIR++I D + +I L R +++ + + + + Sbjct: 507 TYIRSLIRDFANSMNTSGTLIKLVRTEQNEFNYKNSLHYDDIN 549 >UniRef50_C8PIZ6 tRNA pseudouridine synthase B n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PIZ6_9PROT Length = 282 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 62/202 (30%), Positives = 102/202 (50%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N + L DKP G+ SN L +KR Y +AG +G LDP A+G L + G+ +F ++L Sbjct: 1 MNRLFLADKPAGIGSNKFLSALKRKYGVKKAGFSGTLDPFASGALIVAFGQYARFFRFLK 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y LG ++ + D + E+ S + L AA+ RG+I+ IP +SA K Sbjct: 61 KEPKIYAATLWLGAQSPSGDNENIERVEQIPPLSRKVLDAAIAQMRGEIKFIPPAFSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y+ AR G EV + + V++ + + + + S+G Y+R+ L EK Sbjct: 121 IDGVRAYKLARAGEEVSLKESSMRVFDAEILSYAHPFVSFRVALSEGGYVRSFAQILAEK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVER 212 LG + LRR + + ++ Sbjct: 181 LGVCGTLSALRRESEGAFDLKD 202 >UniRef50_Q8CXQ2 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma penetrans RepID=TRUB_MYCPE Length = 232 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 3/211 (1%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 + + ++KP+ SSN +Q +K+ Y + GH G LDPLATG+L + TK L+ Sbjct: 17 DKIFGINKPKNFSSNQVIQIIKKYYGLKKIGHAGTLDPLATGLLLVATNSKTKELNELIL 76 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI-EQIPSMYSALK 130 +K+Y + +T T DA+G+I + L L Q P +YSA+K Sbjct: 77 ENKKYVAEIQFNYQTSTYDAEGEITNYTTRKIHEKTLKEELKFLNSTYWYQQPPVYSAVK 136 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLG 188 +GKKLYEYAR EV + + + ++ I + + + + SKG YIR+ +D+G Sbjct: 137 IKGKKLYEYARANQEVSVPFKKVYINKVELISFDSISQKTFVSLDVSKGFYIRSFANDIG 196 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 +L +++ L+R+ V Y +++ L Sbjct: 197 LRLNNYGYLLNLKRVEVGNYKLDQAYDFFDL 227 >UniRef50_A7GZ93 tRNA pseudouridine synthase B n=16 Tax=Campylobacter RepID=TRUB_CAMC5 Length = 273 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 29/292 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N + + +KP G+SSN L ++KR Y +AG +G LDP A+G L + G TKF ++L Sbjct: 1 MNAIFVANKPTGLSSNQFLNRLKRKYGVKKAGFSGTLDPFASGCLIVAFGSYTKFFRFLD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y +G + + D + + F+ E L A + G ++ IP +SA Sbjct: 61 KTPKIYEATMWIGASSPSGDNENITDVKILKPFADESLEIARKSLLGRLKYIPPKFSAKN 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y+ AR G E + + + V+ + + L I S+G Y+R+ G++ Sbjct: 121 INGTRAYKLARTGEEFSLKEQEMEVFSCEILSYRHPFLTFRISLSEGGYVRSYAQLFGKR 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG + L+R++ K+ E + + E ++P + L Sbjct: 181 LGYDVCLSELKRISEGKFRFEN-------EKFLNICEILNLPRNKYLG------------ 221 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 +G ++ S + + E KF+ + EI ++ Sbjct: 222 ---------DVADIMDGKSLKPSDFTTQKDG-IYLLEYDKFLSIIEIKNDTI 263 >UniRef50_UPI00019786FE tRNA pseudouridine synthase B n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI00019786FE Length = 276 Score = 210 bits (535), Expect = 5e-53, Method: Composition-based stats. Identities = 63/290 (21%), Positives = 116/290 (40%), Gaps = 28/290 (9%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 ++ KP +SSN L ++KR + + G+ G LDP A G+L + G T+ +L + Sbjct: 5 LVAAYKPPFISSNVYLGRLKRHFGIKKGGYLGTLDPFAQGVLVVGFGSYTRLFPHLRKTP 64 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K YR LG ++ + D + + E S ++ L++ RG + P +SA G Sbjct: 65 KVYRATLWLGAKSLSLDIEHITLVECVKEQSKAHISEILESLRGTLSYTPPKFSARHING 124 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 K+ YE AR+G E +T+Y++ + + L E+ S+G Y+R+I + E LG Sbjct: 125 KRAYELARRGEEFELSQTQMTIYDIKLLHYNHPFLHFEVSVSEGAYVRSIGAMITENLGV 184 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPV 253 + +L R + + V + +L P++ Y Sbjct: 185 NGVLSHLERTSEGEMSVSQ----------------------TQGLKILNPIE--FLPYKR 220 Query: 254 VNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 + G + + + F + ++ +G V Sbjct: 221 LENMQKFYDDMCCGKKILLKNTEKGKYIVCFDD----FFSIIQVLSDGSV 266 >UniRef50_Q601U7 tRNA pseudouridine synthase B n=3 Tax=Mycoplasma hyopneumoniae RepID=TRUB_MYCH2 Length = 327 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 77/302 (25%), Positives = 128/302 (42%), Gaps = 33/302 (10%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 + L KP+ +SS L++ + +AGH G LDPLA+G+L + + TK QYL Sbjct: 49 ITFLYKPKKISSAKFLRQWSKTNLIKKAGHAGTLDPLASGLLLVATEDDTKLLQYLDQKT 108 Query: 74 KRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + G + T DA+GQI E+P+ + + L AL+ +Q+P ++S+ K Sbjct: 109 KTYLAKIQFGFWSTTYDAEGQIYGVEQPIKVTKDNLEQALNRLSESQKQVPPVFSSKKVS 168 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEG--NELELEIHCSKGTYIRTIIDDLGEK 190 GK Y YARQG ++ + I + + + I + + S+G YIR++ DDLG+ Sbjct: 169 GKSAYHYARQGKQIELKPISIKISKTILINFDEKLQNCVIMWQVSRGCYIRSLADDLGKM 228 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L A++ L R + + + L+ L P D D Sbjct: 229 LKTRAYLSDLERTKIGNFD------------------------KKFLNQSLKPQD--LFD 262 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 V L L + G + E + + +G G+I + ++L Sbjct: 263 LQQVKLDLENLELLLQGKKINYFAKNSELNTLIF---KDEVVGFGKII-NNVLITKKLFG 318 Query: 311 EY 312 Sbjct: 319 NR 320 >UniRef50_O60832 H/ACA ribonucleoprotein complex subunit 4 n=80 Tax=Eukaryota RepID=DKC1_HUMAN Length = 514 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 127/319 (39%), Gaps = 54/319 (16%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G + LDKP SS++ + ++RI + GH+G LDP TG L +C+ AT+ + + Sbjct: 90 GFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSA 149 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y I RL +G QL+ AL+T G + Q P + +A+K Sbjct: 150 GKEYVGIVRLHNA-----IEGGT-----------QLSRALETLTGALFQRPPLIAAVK-- 191 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 190 R+ R T+YE I ++ + C GTYIRT+ LG Sbjct: 192 ---------------RQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLL 236 Query: 191 LGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG G + LRR+ + MVT+ + + Q + L ++ P++ + Sbjct: 237 LGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDA--QWLYDNHKDESYLRRVVYPLEKLLT 294 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEID--- 298 + + + ++ G + G + +V +T + + + Sbjct: 295 SHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAV 354 Query: 299 ----DEGRV-APRRLVVEY 312 D G V +R+++E Sbjct: 355 ISTCDHGIVAKIKRVIMER 373 >UniRef50_Q8CXU1 tRNA pseudouridine synthase B n=6 Tax=Leptospira RepID=TRUB_LEPIN Length = 283 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 67/298 (22%), Positives = 126/298 (42%), Gaps = 29/298 (9%) Query: 23 MSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARL 82 M+S+D + V++ + GHTG LD A+G++ + +G T FS L+ +K Y + Sbjct: 1 MTSSDLVVTVRKKLGFKKVGHTGTLDRAASGLMILPIGSCTSFSSVFLEKEKSYEAWVKP 60 Query: 83 GQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIP-------SMYSALKYQGKK 135 G+ TD+ D +G+I+E + + R EQ+P SALK G++ Sbjct: 61 GESTDSGDKEGEILESLSKEQTETWFQEHQEKLRNLFEQVPTWETQEAPEVSALKVNGRR 120 Query: 136 LYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGA 195 + R+G+ + R I +Y + + +I S GTYIR I+ D+ +++G Sbjct: 121 RSDLFREGVALVPVVRKIKIYRYELGKFSPESISFQIRVSAGTYIRKIVMDISDRIGFPL 180 Query: 196 HVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVN 255 + L R ++ K + + + E L + + P ++ D+P V Sbjct: 181 RLEKLVRTSIGKLNLNQADSYESLLD---------------GKIKIHPPETIL-DFPTVE 224 Query: 256 LPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR----VAPRRLV 309 +P T NG ++ P+ + V + + + ++ G R+ Sbjct: 225 VPDTEVRNVLNGRKIKLEWIPVNEFLLV--SPEEEILAWCKKEEHGIHELDYKYLRVF 280 >UniRef50_Q1CVV6 tRNA pseudouridine synthase B n=2 Tax=Cystobacterineae RepID=Q1CVV6_MYXXD Length = 302 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 113/237 (47%), Gaps = 12/237 (5%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAG------HTGALDPLATGMLPICLGEATKFS 66 G+ + KP G +S +Q+ A + G H G LDP A G+L + +G+A + Sbjct: 8 GIYRVHKPVGATSFSVVQRFMEEAKAVQPGKRIPVCHGGTLDPFAEGLLLVLVGQAPRLF 67 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQ-IVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 + L K Y G TDT D G+ +++ + L AAL +F G EQ+P Sbjct: 68 ELLHAVPKVYEAEVVWGTETDTGDLHGRPVLQGDTAALTPGALDAALASFVGWREQVPPA 127 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL-ELEIHCSKGTYIRTII 184 SA K G+ Y A +G V + ++ ++ H+ L + C G Y+R++ Sbjct: 128 TSAKKVGGEPAYRKAHRGEAVELPPSRVYLHAARWLSHDLPRASRLWLSCRGGYYVRSLA 187 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKY---PVERMVTLEHLRELVEQAEQQDIPAAELLD 238 D+G LGCGAH+ LRR A+ + + + V L H R+L+ A + + AE+ + Sbjct: 188 RDVGRALGCGAHLSTLRRTAIGPWEDPGLGQRVWL-HGRDLLPWARVRTLTDAEVGE 243 >UniRef50_Q7M9J1 tRNA pseudouridine synthase B n=3 Tax=Helicobacteraceae RepID=TRUB_WOLSU Length = 291 Score = 206 bits (525), Expect = 8e-52, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 122/293 (41%), Gaps = 29/293 (9%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 N + + KP MSSN LQ++KR + +AG++G LDP A G+L + G T+ +L Sbjct: 20 NALFVGYKPMFMSSNHYLQRLKRRFGVKKAGYSGTLDPFAKGVLVVAFGHYTRLFDHLNQ 79 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR LG +D+ D + + E +S E++ + G+I P Y A + Sbjct: 80 EPKVYRATLWLGLHSDSLDIENILGVEVIPPYSKERVEEIMGALEGEISYTPPKYCAKRI 139 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 G++ Y+ AR EV + V L + + + E SKG+YIR++ + +L Sbjct: 140 GGRRAYDMARNKEEVELPILTMRVGRLSLLHYTHPFVHFEAEVSKGSYIRSLGGMIASRL 199 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GC + L RL+ + E LE L ++P Y Sbjct: 200 GCYGALSSLERLSEGEMRFEGYRELEPLE--------------------ILP-------Y 232 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 P ++ + F +G + S + E +F + EI + V Sbjct: 233 PKIDAT-SLKEEFLHGKKLLASDLGNPKEGK-YIAEFEEFFSIIEIKEGQVVY 283 >UniRef50_A8BZ83 Centromere/microtubule binding protein CBF5 n=2 Tax=Giardia intestinalis RepID=A8BZ83_GIALA Length = 421 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 124/319 (38%), Gaps = 44/319 (13%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV+ LDK G SS++ + ++RI + GH+G LDP TG L +CL AT+ + Sbjct: 50 GVINLDKTAGPSSHEVVAWIRRILEVEKTGHSGTLDPGVTGCLLVCLDRATRLVKSQQLM 109 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + + D D + + L AL T R Q+P Sbjct: 110 GKEYVCVLQFKDLAALKDEDAR-------KAFSACLQQALATLRCAQLQLPPK------- 155 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGN--ELELEIHCSKGTYIRTIIDDLGEK 190 +G V R+ R +Y L + + L C GTY+RT+ +G Sbjct: 156 ---------EGCAVKRQLRVREIYTLDLLEFNFKTGQAVLRASCQAGTYMRTLCVHIGLL 206 Query: 191 LGCGAHVIYLRRLAVSKYPVE-RMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +G A+++ LRR+ + + MVTL + + +++ L ++MP++ Sbjct: 207 VGHEAYMLELRRVRSGELTEKTNMVTLHDVLD--SFWCWKNLGDESYLRKVVMPLEYLLK 264 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGA------PLEGLVRVTEGENGKFIGMGEID----- 298 Y + + +S G P+ G G V G+ + +G Sbjct: 265 SYKRIFVKDSSINALTYGAPLHIQGVLRYDPRISIGDTVVLVSTKGEAVALGTATMGAQD 324 Query: 299 ----DEGRV-APRRLVVEY 312 G V +R++++ Sbjct: 325 IMGVSRGIVSKVKRVIMDR 343 >UniRef50_P59879 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma gallisepticum RepID=TRUB_MYCGA Length = 218 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 1/208 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 N ++++DKP+ +SS L K+ +N +AGH G LDPLA+G+L + + TK L Sbjct: 9 NKIVIIDKPKNISSAFCLNLFKKRFNIKKAGHNGTLDPLASGVLVVATNKRTKELSQLNQ 68 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRG-DIEQIPSMYSALK 130 DK+Y V + TD+ D G+++ +QL L + Q+P +SALK Sbjct: 69 DDKQYLVKLKFNTHTDSYDRLGKVIRTTNYVPEIKQLNDYLTSLDNHSFYQLPPNFSALK 128 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y+ AR+ ++ E RP T+Y+ I + + E+ + KG Y+R+ + DL + Sbjct: 129 VNGVRAYQLARKAVDFELEKRPTTIYKAKLISYYDDYAEILLDVKKGFYVRSFVVDLASQ 188 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEH 218 A ++ L R +Y ++ ++ + Sbjct: 189 FNTTAMMVDLVRTRSGQYSLKDVIDYQF 216 >UniRef50_A9UQA2 Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis RepID=A9UQA2_MONBE Length = 212 Score = 203 bits (518), Expect = 4e-51, Method: Composition-based stats. Identities = 69/206 (33%), Positives = 98/206 (47%), Gaps = 6/206 (2%) Query: 33 KRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDAD 92 KR + GH G LD A G+L I +G ATK L DK Y LG+RT T D D Sbjct: 1 KRKQPKLKVGHGGTLDAEAEGVLVIGVGGATKQLSQFLACDKSYEFDVELGRRTTTLDVD 60 Query: 93 GQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREAR 151 G++ E P +A+ L AAL+ F GDI QIP YSAL+ GK+L ++AR G V + R Sbjct: 61 GEVEAEAPFEHVTADMLQAALNEFVGDIMQIPPRYSALRIDGKRLSDHARSGTPVDPQPR 120 Query: 152 PITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV- 210 P+ V + + + C G Y+R++ DL K+ HV L R ++ + Sbjct: 121 PVRVLAAQLQAYVAPVATIAVTCGGGFYVRSLARDLAWKVQSEGHVTRLVRTRQGRFDLS 180 Query: 211 ----ERMVTLEHLRELVEQAEQQDIP 232 E T L + +++ Sbjct: 181 AALPEDAWTPAQLEAALAANNKREEQ 206 >UniRef50_B5Y924 tRNA pseudouridine synthase B n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y924_COPPD Length = 290 Score = 203 bits (518), Expect = 5e-51, Method: Composition-based stats. Identities = 78/305 (25%), Positives = 118/305 (38%), Gaps = 24/305 (7%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 ++++G L KP+G+ L KVK +AG+ GALDP A G++P+C+G A +FS + Sbjct: 2 QELDGFLWTIKPRGLKPMAFLSKVKSALGVKKAGYVGALDPFAWGLMPVCIGRACRFSDF 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 L K Y + + G TDT D G ++ S E L LDT RG +E S+ Sbjct: 62 FLSLPKTYVCVLQFGLETDTWDITGNVINLSEHRPSVEALKECLDTLRGQVEYPIPPLSS 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYE------LLFIRHEGNELELEIHCSKGTYIRT 182 K GK+LY G V V + L + L SKGTYIR Sbjct: 122 KKVNGKRLYYLFYDGKPVTGLKGIAHVSKSLLLEVLESNEKGIEKATLLFEVSKGTYIRG 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +G+ L V L R+ + + V L+ + ++ Sbjct: 182 LAKKIGDMLNVPCVVSELARVKIGHISISAGVPLQDVDPG-----------------KVI 224 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 D S P + + + V S + F+G+G I G Sbjct: 225 STDEALSFLPDIPVQGAVEKRLRQSGRVDYSMSVSSASSYYRIWGTHGFLGVGRIST-GE 283 Query: 303 VAPRR 307 + R Sbjct: 284 LVMER 288 >UniRef50_Q30TG2 tRNA pseudouridine synthase B n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=TRUB_SULDN Length = 273 Score = 203 bits (516), Expect = 8e-51, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 1/208 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N + + KP G+ SN L ++KR Y +AG +G LDP A G+L I +G TK ++L Sbjct: 1 MNRLFVAYKPAGIGSNLFLSRIKREYKTKKAGFSGTLDPFAKGVLIIGMGSYTKLFRFLA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K YR LG ++DT D + E F + A+ + G +E P ++SA + Sbjct: 61 KAPKVYRATLWLGAKSDTLDTEMIEEVEILEEFDEADVLKAIKSLEGSLEYEPPIFSAKQ 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G++ Y+ AR G+E T+YE + + + E S+GTYIR++ + + Sbjct: 121 INGQRAYDLARAGVEFSLNKINSTIYETKLVSYCHPFVTFEAIVSEGTYIRSLGLIIANR 180 Query: 191 LGCG-AHVIYLRRLAVSKYPVERMVTLE 217 LG + L RL+ ++ + L+ Sbjct: 181 LGVKNGSLSALERLSEGRFKYDNHKPLD 208 >UniRef50_B3PMC8 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMC8_MYCA5 Length = 285 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 114/300 (38%), Gaps = 27/300 (9%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 ++K +G+SS A+++ + + + GH G LDPLA G+L + + TK + + D Sbjct: 2 FYQINKKRGISSFKAIKEFAKENHIKKIGHAGTLDPLAQGLLIVATDQDTKMLSLIANDD 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y V A L + + + D I + E L LD + Q+P +SA K G Sbjct: 62 KEYYVKAFLHRSSASYDEGEPITYLENKHITKEMLLKVLDELKNTTTQLPPAFSAKKVNG 121 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLGEKL 191 + Y AR V + I ++ + I E E SKGTYIR+++ D+G L Sbjct: 122 VRSYLLARDNKNVVLKPNAIKIHYIKLIDFNYEEQSFIFETKVSKGTYIRSMVHDIGLML 181 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 A L+R V ++ + ++ + Sbjct: 182 ATDACTNILKRTKVGNISLDEKNNFSKINDIRK-----------------------LFGV 218 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVE 311 + L + P+ ++ + N + IG G + + G + +L Sbjct: 219 SLYTLTKNQIILLAKQQPLFIENLAMQNDQTIFTFLN-EIIGYGTV-EHGNIKFTKLFYP 276 >UniRef50_B9L8F5 tRNA pseudouridine synthase B n=5 Tax=Epsilonproteobacteria RepID=B9L8F5_NAUPA Length = 294 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 68/301 (22%), Positives = 117/301 (38%), Gaps = 39/301 (12%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 N + + +KP +SSN L ++KR Y + G +G LDP A G L I G+ T+ ++L Sbjct: 13 NILFVANKPIFVSSNKFLNQLKRKYGIKKMGFSGTLDPFACGCLIIASGQYTRLFRFLKK 72 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K Y LG + + D + + F + + L F G +Q+P YSA + Sbjct: 73 TPKTYIATLMLGAYSPSLDIEKIETITQIDPFEKDLIINTLKEFLGKQKQLPPKYSAKRI 132 Query: 132 QGKKLYEYARQGIEVP----------REARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 G++ Y + I ++++ I + + + S+GTYIR Sbjct: 133 NGQRAYNLIENAELRIENNISQNVYLEKEIDIEIFDIELINYSHPFITFKASVSEGTYIR 192 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 ++ D+ +KLG + YL R+ K+ E E L E + + ++ L+ Sbjct: 193 SLGFDIAKKLGVDGALTYLERVNEGKFHYE----CEKLLNPTEYLDLDENVYLGDIENLI 248 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 + L KNG + +F + EI DE Sbjct: 249 L----------GRKLNANDFKIKKNGQ---------------YYVKFDRFFAIIEIQDEK 283 Query: 302 R 302 Sbjct: 284 V 284 >UniRef50_A9CM09 Cbf5 (Fragment) n=2 Tax=Thermofilum RepID=A9CM09_THEPE Length = 229 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 63/258 (24%), Positives = 106/258 (41%), Gaps = 38/258 (14%) Query: 28 ALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTD 87 + ++++ R H G LDP +G+LPI L A + LL DK Y + RL Sbjct: 1 VVAWLRKLLGIERIAHAGTLDPKVSGVLPITLNNAVRVLPVLLKEDKEYVCVMRLHG--- 57 Query: 88 TSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP 147 E+L + F+G I Q P + SA+K Sbjct: 58 --------------DVDPERLERVVSMFKGRIYQRPPLRSAVK----------------- 86 Query: 148 REARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSK 207 RE R +Y++ + L + C GTY+R + D+GE LG GAH+ LRR+ Sbjct: 87 REVRIRQIYDIRLLEFNERTALLHVWCEAGTYMRKLCHDIGEILGVGAHMQELRRIRSGS 146 Query: 208 YPVE-RMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKN 266 + T+ + + +++ I L + +P+++ P V + ++ + Sbjct: 147 LYEDRNCSTMHDVVDAYYIWKERGID--HFLRQVFLPVEAAIQHLPKVWIRDSAVDAVCH 204 Query: 267 GNPVRTSGA-PLEGLVRV 283 G P+ G LEG ++V Sbjct: 205 GAPLAVPGIVKLEGGIKV 222 >UniRef50_C5J6V5 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6V5_MYCCR Length = 286 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 34/299 (11%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 + LL KP G+SS + + + + GHTG LDPLA G++ I + TK +Y+ + Sbjct: 2 IKLLYKPSGISSFKFITRFAKDNKIQKIGHTGTLDPLARGLMLIATDDDTKLIEYIDKGE 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE-QIPSMYSALKYQ 132 K Y G+ + T D +GQI ++ I+ Q P ++SA K Sbjct: 62 KEYIADFYFGKISTTYDIEGQISNYLGAKKVDKEALLLALANLAVIQVQKPPIFSAKKLN 121 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y A+Q + + PI +++ + + ++ S+GTYIR++I DLG Sbjct: 122 GVRAYSLAQQQKNIELKDIPIKIFDWELLDFDYQNQSGKVRWVVSRGTYIRSLIHDLGFM 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L GA + L R ++ LD + P++ + Sbjct: 182 LKSGAIMSGLERTKIAHLD------------------------KTFLDLEINPINLINKE 217 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 V + + G + + E ++ +GK IG+G I + +L Sbjct: 218 I--VKINFSELKKIFQGYKIPFFTSSGEKIII----YDGKIIGIGAI-ANNVLFSSKLF 269 >UniRef50_B3L1T9 Trna pseudouridine synthase, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L1T9_PLAKH Length = 478 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 34/252 (13%) Query: 3 RPRRRGRDIN-----GVLLLDKPQGMSSNDALQKVKRIYNAN-----------RAGHTGA 46 + +++ ++ G+L + KP S ++VK + + + GH G Sbjct: 216 KKKKKEATLDDILYGGLLNIYKPVNTYSMKVCERVKGVLKEHFKHVCKMNLNFKVGHGGT 275 Query: 47 LDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP------ 100 LDP A G+L I + + TK L K+Y + G TDT D +G +V+ Sbjct: 276 LDPFAEGVLVIGIQKGTKKLSDFLKCYKKYLALGLFGLETDTLDREGNVVKISNEMMKGK 335 Query: 101 VTFS----------AEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREA 150 + + + + L+ G + Q P +YSA + G +LYEYAR+ I V + Sbjct: 336 IPQTGTNTHDTLTLKKNIIHTLNRLIGHVYQTPPLYSAKRVHGMRLYEYARKKIPVHIKP 395 Query: 151 RPITVYELLFIR-HEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVS-KY 208 + + L ++ + +L+I CS GTYIR+++ D +L A +I L R+ ++ Sbjct: 396 SKVHIQNLKYLNQVDLPFFDLDIKCSGGTYIRSLVRDFAHELNTHATLIKLIRIQQGEQF 455 Query: 209 PVERMVTLEHLR 220 E + + + Sbjct: 456 LYEHSLHYDDIN 467 >UniRef50_B6K5T9 tRNA pseudouridine synthase n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5T9_SCHJY Length = 359 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 137/316 (43%), Gaps = 87/316 (27%) Query: 11 ING-VLLLDKPQGMSSNDALQKVKRIYNAN----------------------------RA 41 +NG ++ ++KPQG++S L ++K I + + + Sbjct: 1 MNGGLIAVNKPQGVTSAQCLNQLKAIISDSPLAKYFRSPAPHPNDRNRRRRKKHSLDIKI 60 Query: 42 GHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV 101 GH G LDPLA+G+L + LG TK LL K Y +A G+ TDT D+ G+IVE Sbjct: 61 GHGGTLDPLASGVLVVGLGSGTKQLSKLLSCKKVYETVALFGRSTDTYDSSGKIVESAEH 120 Query: 102 TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP--REARPITVYELL 159 + E++ AL +F+GDI Q+P +YSAL GK+LYEYAR+G+ +P +ARP+ +++ Sbjct: 121 VPTKEEIETALPSFKGDIMQMPPIYSALHVNGKRLYEYAREGLPLPDSVKARPMHCFDVE 180 Query: 160 FIRH---------EGNELEL---------------------------EIHCSKGT----- 178 + + + E+ ++GT Sbjct: 181 MTKFMSKGEHTYCDPDNFFELEAAEEGAEENKDSEKKNKQGKKRKFNEVDLTRGTREPIG 240 Query: 179 -------------YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER--MVTLEHLRELV 223 Y+R+ ++DLGEK+ +H++ L RL + + + ++E Sbjct: 241 PAASFRLTVSSGFYVRSFVNDLGEKVNSKSHMVELVRLQQGDFELNKPGCFSMEEFHSGE 300 Query: 224 EQAEQQDIPAAELLDP 239 + D L D Sbjct: 301 WLKKLADYFKLSLDDE 316 >UniRef50_B9ZCE8 Pseudouridylate synthase TruB domain protein n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9ZCE8_NATMA Length = 314 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 75/298 (25%), Positives = 111/298 (37%), Gaps = 56/298 (18%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYN-----------------ANRAGHTGALDPLATGML 55 GV+ LDKP G SS+ ++ ++A H G LDP TG L Sbjct: 23 GVVNLDKPPGPSSHQVSGWLRDAVADALAEADQSEDSDTSPTIDQAAHAGTLDPKVTGCL 82 Query: 56 PICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF 115 P LG+AT+ +Q L+ K Y + + + + F Sbjct: 83 PTMLGDATRLAQVFLEGHKEYVAVLECHGSIP------------------ADVESTVAEF 124 Query: 116 RGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCS 175 G I Q P SA V R R +YEL + +L L I C Sbjct: 125 EGPIYQKPPRKSA-----------------VSRRLRVREIYELDVLEQGDRQLLLRIRCE 167 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 GTY+R + DLG LG G H+ +LRR A S + + T + + + D Sbjct: 168 SGTYVRKLCHDLGLALGTGGHMGHLRRTATSPFDDTDLYTATEFLDALAFWLEDD--DPS 225 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIG 293 LL ++ P + + P + + T++ G PV G +V T E G + Sbjct: 226 LLYDIVDPAERILEEIPHLVIDSTAAREVAEGAPVYAPGVR--KVVADTALERGDLVA 281 >UniRef50_Q18GM5 tRNA-pseudouridine synthase n=1 Tax=Haloquadratum walsbyi DSM 16790 RepID=Q18GM5_HALWD Length = 339 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 72/299 (24%), Positives = 109/299 (36%), Gaps = 67/299 (22%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV+ LDKP G S++ V+ + RA H G LDP TG LPI LGEAT+ + L+ Sbjct: 23 GVVNLDKPVGPSAHQVSAWVRDLIGVERAAHAGTLDPKVTGCLPILLGEATRLAPVFLEG 82 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + + L+ ++TF G I Q P SA+ Sbjct: 83 TKEYLAVLEFHGPPPS------------------DLSMIIETFEGTIYQKPPRKSAV--- 121 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 ++L R I ++L + + + L I C GTYIR + DLG G Sbjct: 122 SRRL------------RKRTIETLDILEVDSDAQQALLRIRCESGTYIRKLCHDLGLAAG 169 Query: 193 CGAHVIYLRRLAVSKY---------PVERMV--TLEHLRELVE----------------- 224 GAH+ LRR + + + V TLE + + Sbjct: 170 TGAHMGDLRRTGTTPFSDTNLISTADLTDAVVFTLEEIVRANQTQINDAPDDSTAAYSLL 229 Query: 225 ------QAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL 277 + + L ++ P + P V + +++ G PV G Sbjct: 230 HKINTANIDPNSTSPTDHLRNVISPAERALQHLPTVIIAPSAAAEVAMGAPVYAPGVIE 288 >UniRef50_C3XI25 tRNA pseudouridine synthase B n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XI25_9HELI Length = 361 Score = 196 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 114/287 (39%), Gaps = 20/287 (6%) Query: 19 KPQGMSSNDALQKVKRIYNA-----NRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 KP +SS +K+ + G +G LDP A GML + + TK ++ Sbjct: 11 KPPNISSLSFANMLKKGLKELGYPVKKIGFSGTLDPFAHGMLILGVNHYTKLLSHIRKDY 70 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y+ + LG + + D + + + +S E++ A+ +G+I P +SA G Sbjct: 71 KTYKAVLFLGLESKSLDIENIVCLHQIKPYSHEEIEKAIQNIQGNISYKPPKFSAKHING 130 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 + YE R+GI+ + + + + + L E+ S+G YIR+I + + + LG Sbjct: 131 VRAYELMRKGIDFDIDTITTDIKYIKILNYSHPFLSFEVCVSEGGYIRSIGEIIAKNLGI 190 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL-------DPLLMPMDS 246 + L R+ ++ + M L+ + I + +++ + + Sbjct: 191 CGSLCSLERVQEGEWNYKNM--LKDSMTHKQNNVLGCIEVPLQIQGIRQNAKVIILNIKN 248 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTS----GAPLEGLVRVTEGENG 289 Y + L + NG + +VRVT+ + Sbjct: 249 ALK-YDTIQLT-EYAKIAYNGAKFILNPSLCAKIFSDMVRVTDSKKD 293 >UniRef50_B2VX57 tRNA pseudouridine synthase B n=2 Tax=Pleosporineae RepID=B2VX57_PYRTR Length = 344 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 75/289 (25%), Positives = 111/289 (38%), Gaps = 47/289 (16%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIY----------------------NANRAGHTG 45 + + GV + KP +SS D L K++ + R GH G Sbjct: 6 EKVLEGVFAVAKPAHVSSADVLLKLQATFASSVTFAPLLRTQPKRTSKSSDQVFRLGHGG 65 Query: 46 ALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFS 104 LDPLA G+L + +G TK L K Y G TD+ D G I E + Sbjct: 66 TLDPLAAGVLIVGIGRGTKSLSQYLLCSKTYETTVLFGASTDSYDCTGLITERAECAHIN 125 Query: 105 AEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIE--VPREARPITVYELLFIR 162 + + L FRG I+Q+P +YSALK G K EY RQG E E+R + V E ++ Sbjct: 126 RKLVEEKLQDFRGTIQQVPPVYSALKINGMKACEYVRQGKELPRELESREMQVDECTLLQ 185 Query: 163 HEG-----------------NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAV 205 + + G Y+R+ DLG +H+ L R Sbjct: 186 WYEAGEHKFAWPGEEKPAPAPAARIRLTVCSGFYVRSFAHDLGMACNSLSHMTNLLRTRQ 245 Query: 206 SKYPVERMVTLEHLRELVEQAEQQDIPAAELL-DPLLMP-MDSPASDYP 252 + Y ++ L +L D+ A E + L P ++ + P Sbjct: 246 ANYTIDN---LPESSDLTPALTYLDLEAGEDVWGSKLRPQLEKWVTANP 291 >UniRef50_D1J822 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J822_MYCHP Length = 287 Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 3/214 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 L K +G SS A++K + N N+ GH G LDP A G+L + E TK + + + Sbjct: 2 FYKLYKKRGQSSFFAIKKFAKNNNINKVGHCGTLDPEAEGLLIVATDEDTKALSLIENQN 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y V A+ +D+ D + + + + Q+ AL+ + +Q+P +YSA K Sbjct: 62 KEYYVEAKFHYSSDSFDLGTYVTKIQNFQIITKSQIIQALEILKKQTKQVPPIYSAKKIN 121 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y+ AR E +A I + L I + ++++ SKGTYIR++I DL Sbjct: 122 GTRAYKLARDNKEFSLKANDIKINNLELIEFNEVNQSIIIKVNVSKGTYIRSLIHDLANI 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 A V+ L+R+ + + E + L E Sbjct: 182 CNTDAVVVVLKRIKIGNICLNGQEEFEKITNLNE 215 >UniRef50_B8CCU3 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8CCU3_THAPS Length = 186 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 19/184 (10%) Query: 40 RAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER 99 + GH G LDPLA+G+L + +G+ T Q L+ DK+Y + LG T T DA+G +V+E Sbjct: 3 KVGHGGTLDPLASGVLVLGIGKGTTQLQSYLEGDKQYVAVCELGYETTTLDAEGDVVKEM 62 Query: 100 PVTFSAE-------------QLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQG--- 143 + L F+G I+Q+P +YSA++ GK+LYE AR+G Sbjct: 63 EWAHVKSVKGGSDSDSTNTSSVEGVLSKFQGKIQQVPPLYSAIRVDGKRLYEIARKGDVN 122 Query: 144 -IEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYL 200 +V R + VY + E + LE+ C GTYIR+++ D+G +L A + L Sbjct: 123 SDDVEIPTREVEVYGVKAYNCTLELPQFALEVQCGGGTYIRSLVRDIGYELDTVATMTGL 182 Query: 201 RRLA 204 R Sbjct: 183 VRTK 186 >UniRef50_Q4A5J8 TRNA pseudouridine synthase B n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A5J8_MYCS5 Length = 287 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 62/301 (20%), Positives = 125/301 (41%), Gaps = 26/301 (8%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 ++KP + N ++ + NA + G +G LDPLA+G++ + TK QY+ + Sbjct: 2 FYKINKPTNVFCNKYIRSWAKENNAEKIGQSGTLDPLASGLVIMATNSDTKILQYVKNQP 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y ++T D+DG++ + + ++L A+ + Q+P +S+ K +G Sbjct: 62 KVYLAKMEFNLFSNTLDSDGEVKKLNYKKVTLQKLEKAIVKIKKQTYQMPPQFSSKKVKG 121 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDLGEKL 191 KK + A + I + + + I ++ + E E+ S GTYIR+I DL + Sbjct: 122 KKALDLAYKNIAIKLKKQKIKIFSFELLEFNFEKQYAVFEVSVSSGTYIRSIAKDLAKYC 181 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 A + L+R ++ + +++ E + + + Sbjct: 182 NSSAILTSLKRKSIDNIFLND----------LKENEFEKLNIKN------------LFNI 219 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVE 311 + +L + KNG V + E + + + + K + G+I P+ + VE Sbjct: 220 KMHSLSIEDLNKLKNGQRVFLNYLN-EKVFFIVDKNSAKVLATGKI-KNKYFYPKNVFVE 277 Query: 312 Y 312 Sbjct: 278 R 278 >UniRef50_B0CSL3 Predicted protein n=3 Tax=Agaricales RepID=B0CSL3_LACBS Length = 334 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 76/308 (24%), Positives = 121/308 (39%), Gaps = 86/308 (27%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYN----------------------- 37 M + ++G+ + KP G +S + ++++ Sbjct: 1 MPKISLPALPVSGLFGIIKPSGPTSMSVIHDLQQLIGRSKLFVEAEKLEAAKNNKASKRK 60 Query: 38 ------ANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDA 91 A + G G LDPLA G+L + +G+ TK L+ K YR LG TD+ D+ Sbjct: 61 DKRSRDAVKIGQGGTLDPLADGVLVVGVGKGTKKLSDFLNCTKEYRTTCLLGCETDSYDS 120 Query: 92 DGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPRE- 149 G V P + EQ+ AAL F G+I Q+P ++SALK G+ LYEYAR+G+ +PR Sbjct: 121 KGSRVRLAPWHHVTREQVEAALPKFIGEISQVPPIFSALKMDGRPLYEYARKGLPLPRPI 180 Query: 150 -ARPITVYELLFIRHEGNELELE------------------------------------- 171 R +TV+ L + +G + Sbjct: 181 EPRKVTVHSLELVEWKGQDHTFRWPEKSFSEAEKKAMQTALEGANEPVSLQDEPESDVDD 240 Query: 172 ---------IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER--------MV 214 + S GTY+R+I+ DL +G HV+ L R ++ +E+ V Sbjct: 241 KVPIAFVLKMKVSGGTYVRSIVHDLAHAIGSAGHVVTLTRSRQGRFVLEKPEEEEDRTCV 300 Query: 215 TLEHLREL 222 E + Sbjct: 301 PWEVIEAA 308 >UniRef50_C7H129 tRNA pseudouridine synthase B n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H129_9FIRM Length = 365 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 28/228 (12%) Query: 95 IVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPIT 154 I E+ S EQ+ +AL G Q P +SALK GKKLYEYAR+G +V R + Sbjct: 149 ISEKVVSNISKEQVESALLNMIGINMQEPPAFSALKLNGKKLYEYAREGKKVELRPREVD 208 Query: 155 VYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER 212 + E+ ++ + + SKGTY+R+I +DLG+ LG GA + L R ++ ++ Sbjct: 209 IKEIELLKFDETSQAGSFKALVSKGTYVRSICNDLGKALGSGACMTSLVRTKSGRFNLDN 268 Query: 213 MVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT 272 V + + E D L D+ SD+ V+L + F+NG + Sbjct: 269 AVRIIDITE----------------DTELHRWDAGLSDFGRVSLDTVRAQGFRNGLNLEI 312 Query: 273 SGAPLEGL----------VRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 + + + V E+ +GM E+ + + R++V Sbjct: 313 AESEMRKPCENAGKFKRHYVVECREDKALLGMAELTADNFIKHRKVVC 360 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 35/87 (40%), Positives = 57/87 (65%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 R+ NG+L++DKP G++S+D + V+++YN + GH G LDP+A+G++ + +G AT+ + Sbjct: 2 KRENNGILVIDKPVGLTSHDCVSMVRKVYNIKKVGHAGTLDPIASGVMVLFVGNATRMIE 61 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQ 94 Y + K Y +LG TDT D GQ Sbjct: 62 YYGEDYKEYECGFKLGFSTDTYDITGQ 88 >UniRef50_B9WH58 tRNA pseudouridine synthase, putative n=6 Tax=Saccharomycetales RepID=B9WH58_CANDC Length = 386 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 79/288 (27%), Positives = 132/288 (45%), Gaps = 59/288 (20%) Query: 11 INGVLLLDKPQGMSSNDALQKV-------------------------------------K 33 +NGV + KP G++S ++ + K Sbjct: 1 MNGVFAVYKPSGITSAKFIETIQSKFTKSEVFAKDLQEMKDKIRSDLSRDRKWKPHKIEK 60 Query: 34 RIYNAN-RAGHTGALDPLATGMLPICLGEATKFSQYLL-DSDKRYRVIARLGQRTDTSDA 91 +I + + GH G LDPLA+G+L + +G TK QY L + K Y A LG T T D+ Sbjct: 61 KIASTKVKIGHGGTLDPLASGILVVGVGLGTKKLQYYLAECQKTYETKALLGISTTTGDS 120 Query: 92 DGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP--R 148 +G+IV + + ++E + + ++ F GDI+Q P ++SALK GK LYEYARQG+ +P Sbjct: 121 EGEIVSKNKIDHITSELIDSTVEKFIGDIKQTPPIFSALKVNGKPLYEYARQGLPLPTNI 180 Query: 149 EARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKY 208 + R +TV + I+ + + + E + +L E H L+ Sbjct: 181 KVRDVTVNSITVIKEDSLKTDHEFT--------KLESELDENGVPKEH--GLK-----DN 225 Query: 209 PVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD-YPVVN 255 P L ++ +E+AE++ +P E P L+P D + P+++ Sbjct: 226 PTLNDSPLFFSKQYLEKAEKEGLP-KETGKPKLLPDDESLPEKLPMIH 272 Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 1/96 (1%) Query: 159 LFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV-ERMVTLE 217 + + + S GTYIR++I D+G + A+++ L R S++ + + + LE Sbjct: 262 ESLPEKLPMIHFISDVSSGTYIRSLISDIGRAMESSAYMVELIRTKQSEWELGKNVFRLE 321 Query: 218 HLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPV 253 + E + ++ + Sbjct: 322 DFEKDERIWGPVLKKVFEKGGSEIQDLNKEFEEMSK 357 >UniRef50_A9F237 Probable tRNA pseudouridine 55 synthase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F237_SORC5 Length = 394 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 63/171 (36%), Positives = 89/171 (52%), Gaps = 23/171 (13%) Query: 15 LLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDK 74 L++DKP+G +S+D + +++R R GH G LDP+A+G+L + +GEATK + YL DK Sbjct: 2 LVIDKPRGPTSHDVVARLRRALGVKRIGHAGTLDPMASGVLVVLVGEATKLAPYLTAQDK 61 Query: 75 RYRVIARLGQRTDTSDADGQIVEERPVTF-----------------------SAEQLAAA 111 RY LG TDT DADG+I +P+ +A ++AAA Sbjct: 62 RYTARVVLGVGTDTLDADGEITATQPLPPWLDAELGALAGAGGPPGGEALARAAPRIAAA 121 Query: 112 LDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR 162 +D R EQ P YSA+K G++ Y AR G V AR + V L Sbjct: 122 IDAERARREQSPPAYSAIKVAGQRSYALARAGQVVELSARAVEVRSLEVTG 172 Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 18/132 (13%) Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 L+LE+ SKG Y+R++ DLG L AH+ LRR A + VE+ V+L+ Sbjct: 238 LDLELGVSKGYYVRSLARDLGAHLDVPAHLSALRRTASGSFTVEQAVSLD---------- 287 Query: 228 QQDIPAAELLDPLLMPM-DSPASDYPVVNLPLTSSVYFKNGNPVR---TSGAPLEGLVRV 283 AE L L P+ D+ A+ PV L + + G + S AP V Sbjct: 288 ----AGAEALRASLRPLADAAAASLPVARLTEHGARRARMGQALTESDFSMAPAHPGAAV 343 Query: 284 TEGENGKFIGMG 295 +G + +G Sbjct: 344 WLDPDGAVVALG 355 >UniRef50_A2Q7V7 Contig An01c0080, complete genome n=15 Tax=Leotiomyceta RepID=A2Q7V7_ASPNC Length = 401 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 63/189 (33%), Positives = 91/189 (48%), Gaps = 35/189 (18%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNAN--------------------------------R 40 GV + KPQG+SS D ++ ++ +N + + Sbjct: 9 GVFAVHKPQGVSSADVVRTLQTHFNPSTLFAPWLADERARRARESTYQRKRRRTQRLDVK 68 Query: 41 AGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP 100 GH G LDPLATG+L +G+ TK L K+Y + G TDT D G++V + P Sbjct: 69 IGHGGTLDPLATGILVAGVGKGTKHLNEFLGCTKQYETVVLFGAETDTYDRLGKVVRKAP 128 Query: 101 V-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIE--VPREARPITVYE 157 + E + AL+ FRG I Q P ++SALK GKKLYEYAR+G E + + RP+ V + Sbjct: 129 YEHVTREMVEKALEQFRGKIMQRPPIFSALKVNGKKLYEYAREGKEPPIEIQKRPVEVTD 188 Query: 158 LLFIRHEGN 166 L + Sbjct: 189 LRIVEWYEP 197 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV--ERMVTLEHLRELVEQ 225 +++ + S G Y+R++ DLG+ +G + L R +++ + ++++ + L E Sbjct: 313 VKITMTVSSGFYVRSLAHDLGKAVGSCGLMSSLIRSRQAQFELHPDKVLEYKDLEAGEEV 372 Query: 226 AEQQDIPAAELLDPL 240 + E + Sbjct: 373 WGPKVQRFLEDWEEK 387 >UniRef50_B6W932 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W932_9FIRM Length = 147 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 62/140 (44%), Positives = 91/140 (65%), Gaps = 1/140 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+LL+DK G SS + + ++ + GH G LDPLATG+LP+ + +AT+ S +L+D Sbjct: 3 SGILLIDKNTGASSGKIVYQARKKLGIKKIGHAGTLDPLATGLLPLLINKATRVSDFLMD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDT-FRGDIEQIPSMYSALK 130 K Y +A GQ+TD+ D G+I+E+ TF + L A+D F G+I Q P MYSALK Sbjct: 63 EVKIYETLAFFGQKTDSQDITGEILEKSSKTFELDDLKKAIDENFVGEILQTPPMYSALK 122 Query: 131 YQGKKLYEYARQGIEVPREA 150 ++GKKLYE AR+G + R+ Sbjct: 123 HKGKKLYELAREGKSIERKK 142 >UniRef50_C0NFL8 Pseudouridine synthase n=12 Tax=Eurotiomycetidae RepID=C0NFL8_AJECG Length = 450 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 35/190 (18%) Query: 9 RDINGVLLLDKPQGMSSNDALQ-------------------KVKRIYNAN---------- 39 R++ GV + KP G+SS + L+ +++R + Sbjct: 20 RNLEGVFAVHKPPGISSAEVLRNLQQHFTPSQFFRPWIETERIRRGAESKYQARRRRDKR 79 Query: 40 ---RAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIV 96 + GH G LDP+ATG+L +G TK L K Y + G TDT D+ G++V Sbjct: 80 LEVKIGHGGTLDPMATGVLIAGVGRGTKELNNFLACTKSYEAVVLFGAATDTYDSVGKVV 139 Query: 97 EERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIE--VPREARPI 153 P + +++ AL++FRG I Q PS++SAL+ QGKKLYEYAR+GIE V RP+ Sbjct: 140 SRAPYEHITRDKVEKALESFRGKILQRPSIFSALRVQGKKLYEYAREGIEPPVEILKRPV 199 Query: 154 TVYELLFIRH 163 V +L + Sbjct: 200 EVTKLEILDW 209 Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 165 GNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 ++L + S G Y+R++ DLG L A + L R + + +E LE+ R+L Sbjct: 337 PPAVKLSMTVSSGFYVRSLAHDLGLALDSNAIMSSLVRTRQADFTLEPEKVLEY-RDLEA 395 Query: 225 QAEQQDIPAAELLDPLL 241 E LD + Sbjct: 396 GEEVWGPKLQSFLDEWM 412 >UniRef50_A2XWN3 Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=A2XWN3_ORYSI Length = 288 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 50/241 (20%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 P R R + LD+P + +KR+ N+ GH+G LDP TG L +C+ AT Sbjct: 85 PSRPPR-----VRLDRPW------VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRAT 133 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIP 123 + + + K Y +AR A A + G + Q Sbjct: 134 RLVKSQQGAGKEYVCVARFHAAVP-------------------DTARAFEALTGAMFQRL 174 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIR 181 + SA+K R+ R T+YE + H+ + I C GTY+R Sbjct: 175 PLISAVK-----------------RQLRVRTIYESKLLEHDAERHLAVFWISCEAGTYVR 217 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 T+ LG LG GAH+ L R+ + + MVT+ + + ++ + A L+ Sbjct: 218 TLCVHLGLLLGVGAHMQELHRVRSGIHGEQDNMVTMHDVMDARQEFTSEIPDALNKLNTY 277 Query: 241 L 241 Sbjct: 278 F 278 >UniRef50_O59721 Probable tRNA pseudouridine synthase 4 n=1 Tax=Schizosaccharomyces pombe RepID=PUS4_SCHPO Length = 407 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 66/186 (35%), Positives = 94/186 (50%), Gaps = 31/186 (16%) Query: 13 GVLLLDKPQGMSSNDALQKVKRI-----------------------------YNANRAGH 43 G++ ++KP G +S L ++K+I + GH Sbjct: 51 GLIAINKPSGRTSAQCLNELKKIISNSELAQYFRPAPPHPNDRNRRRRKSNRLPDIKIGH 110 Query: 44 TGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF 103 G LDPLA+G+L + LG TK LL K YR A G TDT D+ G+I++ Sbjct: 111 GGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTYRATALFGCSTDTYDSAGKIIKIAVHIP 170 Query: 104 SAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP--REARPITVYELLFI 161 + E++ + LD FRGDI Q+P +YSAL QGK+LYEYAR+GI +P +AR + EL+ Sbjct: 171 TKEEILSGLDAFRGDISQLPPLYSALHIQGKRLYEYAREGIPLPESIKARSMHCEELILK 230 Query: 162 RHEGNE 167 E Sbjct: 231 DFIPKE 236 Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 34/72 (47%) Query: 165 GNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 G L++ S G Y+R++I DLG ++ AH++ L RL + ++ + Sbjct: 328 GPIAVLDMTVSSGFYVRSLIHDLGRQVNSEAHMVDLVRLKQGSFALDDENCFDFSEFSAP 387 Query: 225 QAEQQDIPAAEL 236 E++ A ++ Sbjct: 388 GWEEKLAAAFKI 399 >UniRef50_Q980C3 Probable tRNA pseudouridine synthase B n=14 Tax=Sulfolobaceae RepID=TRUB_SULSO Length = 251 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 58/276 (21%), Positives = 104/276 (37%), Gaps = 54/276 (19%) Query: 54 MLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALD 113 MLPI + ATK Y+ K Y + ++ + E+LA + Sbjct: 1 MLPIGIENATKIMNYISKGGKEYVCVMQVHCEY-----------------NKEELAKIIS 43 Query: 114 TFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIH 173 +F+G+I Q P + S++K R R +Y++ + + + L ++ Sbjct: 44 SFKGEIYQRPPVRSSVK-----------------RRLRIRRIYDIEILDMDKKLVLLRVN 86 Query: 174 CSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE-RMVTLEHLRELVEQAEQQDIP 232 C GTY+R + D+G GCGAH+ LRR + +V L L E + ++ Sbjct: 87 CDSGTYMRKLCHDIGIIYGCGAHMRELRRTRSGIFTESTNLVKLHELSEAIYL--YKNCK 144 Query: 233 AAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG------APLEGLVRVTEG 286 L +L+PM+ + P + + ++ G + G V V Sbjct: 145 DETELRRVLIPMEFATCEIPKIVIEDSAVNALAYGAQLAVPGVVAYQNFKKNDTVAVLTL 204 Query: 287 ENGKFIGMG---------EIDDEGRVAP-RRLVVEY 312 G+ + G E +G V R+ ++ Sbjct: 205 -KGELVATGNALMDSEELENAKKGIVVNLSRVFMQR 239 >UniRef50_Q6BPN6 DEHA2E12144p n=6 Tax=Saccharomycetales RepID=Q6BPN6_DEBHA Length = 412 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 82/326 (25%), Positives = 142/326 (43%), Gaps = 66/326 (20%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN------------------------------- 39 +NGV ++KP G++S+ + ++ ++ + Sbjct: 1 MNGVFAIEKPSGITSSKFIGDIQALFTQSEIFKNDLNEAKTKAAQALGTDKKWSKERINK 60 Query: 40 -------RAGHTGALDPLATGMLPICLGEATKFSQYLL-DSDKRYRVIARLGQRTDTSDA 91 + GH G LDP+A+G+L + +G TK QY L + +K Y A LG T T DA Sbjct: 61 RVKSLKVKIGHGGTLDPMASGVLVVGVGLGTKKLQYYLSECNKTYETKALLGISTTTGDA 120 Query: 92 DGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREA 150 +G+I+ + V + E + F GD++Q P ++SALK GK LY+YAR+GI +P Sbjct: 121 EGEIITKNQVSHITQEMIKETAPKFIGDLKQTPPIFSALKMNGKPLYDYAREGIPLPMPI 180 Query: 151 --RPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKY 208 R + V+++ + + E T+ +L E+ H +S Sbjct: 181 KVRQVKVFDVKVHDEDSLRTDHEFQ--------TLKSELDEQGNPKEH-------ELSNN 225 Query: 209 PVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPL--TSSVYFK- 265 P L + + +AE + +P E+ P + DS P+++L +S Y + Sbjct: 226 PTLNDSPLYFSEQYLSKAETEGLP-KEVGKPRSLADDSLPEKLPLIHLTADVSSGTYIRS 284 Query: 266 ----NGNPVRTSGAPLEGLVRVTEGE 287 G + +S +E L+RV + E Sbjct: 285 LVSDYGRALESSAYMVE-LIRVRQSE 309 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 4/88 (4%) Query: 166 NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVE 224 + L S GTYIR+++ D G L A+++ L R+ S++ + + + + E Sbjct: 268 PLIHLTADVSSGTYIRSLVSDYGRALESSAYMVELIRVRQSEWQLGKNVFKISDFENRDE 327 Query: 225 QAEQQDIPAAELLD-PLLMPMDSPASDY 251 ++LD + + +D+ Sbjct: 328 --RIWGPVLKKVLDSDHDIDVSKELNDF 353 >UniRef50_Q4PA06 Putative uncharacterized protein n=2 Tax=Ustilaginomycotina RepID=Q4PA06_USTMA Length = 446 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 103/242 (42%), Gaps = 46/242 (19%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIY-------------------------------- 36 R ++G+ ++KP G +S L +K ++ Sbjct: 59 RPLSGIFGINKPSGPTSMSLLDDLKPLFATSPLFADADGNRVNDKSRKRGKFGAKGKAKW 118 Query: 37 -----NANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDA 91 A + G G LDPLA G+L I +G TK Q LD K YR LG T + D+ Sbjct: 119 AGGVAGAPKIGQGGTLDPLADGVLVIGVGNGTKHLQKYLDCTKEYRSTGLLGSATTSYDS 178 Query: 92 DGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPRE- 149 I+ +P + + +A L F G + QIP +YSA++ GK+L+EYAR+ + +PR Sbjct: 179 CDPILTRKPFDHVTPQMIAHLLPRFTGAVLQIPPLYSAVRMDGKRLFEYARENLPLPRPI 238 Query: 150 -ARPITVYELLFIRHEGN------ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRR 202 AR +T++EL + E + E+ + ++ G K G V + Sbjct: 239 EARRVTIHELRLVDWLEPGKHAFKEPQREVPPEDKALVGRVLHMAGRKEGQTDTVKEVDA 298 Query: 203 LA 204 A Sbjct: 299 TA 300 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 23/47 (48%) Query: 165 GNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE 211 LE+ S GTY+R+I+ DL G AHV L R ++ + Sbjct: 341 PPAFVLEMTVSSGTYVRSIVHDLALAAGSAAHVQTLTRTRQGEWSIN 387 >UniRef50_C9SFT4 tRNA pseudouridine synthase B n=7 Tax=Sordariomycetes RepID=C9SFT4_VERA1 Length = 496 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 92/193 (47%), Gaps = 37/193 (19%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN------------------------------- 39 + GV ++KP GMSS ++ ++ +N + Sbjct: 7 LEGVFAINKPLGMSSAQVIRDCQQHFNPSTLFAPLVQQEISKRLNESGSQFKRRGINKKG 66 Query: 40 ---RAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIV 96 + GH G LDPLATG+L + +G TK Q LD K Y + G TD+ D G+I+ Sbjct: 67 ARVKMGHGGTLDPLATGVLILGVGSGTKSLQGFLDCTKTYETVVVFGAGTDSYDRTGRIL 126 Query: 97 EERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREA--RPI 153 RP + E + +D+FRG EQIP +YSALK +GK LYEYAR+ +PRE R + Sbjct: 127 TRRPYDHITREMVEKEMDSFRGKFEQIPPLYSALKMEGKPLYEYAREDKPIPREIIGRDV 186 Query: 154 TVYELLFIRHEGN 166 V EL + Sbjct: 187 EVKELELLEWFEP 199 Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Query: 160 FIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE-RMVTLEH 218 + + + + G Y+R+ DLG K+G A + L R + ++ + + Sbjct: 319 WSDKGPPAARIRMTVTSGFYVRSFCHDLGTKVGSAAMMAELSRDRQGDFALKQNCLEYDD 378 Query: 219 LRELVEQAEQQ 229 L + Q Sbjct: 379 LAKGEAVWAPQ 389 >UniRef50_B7Z7G5 cDNA FLJ52131, highly similar to Homo sapiens TruB pseudouridine (psi) synthase homolog 2 (TRUB2), mRNA n=8 Tax=Amniota RepID=B7Z7G5_HUMAN Length = 275 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 7/211 (3%) Query: 40 RAGHTGALDPLATGMLPICLGEATKFSQYLLDSD--KRYRVIARLGQRTDTSDADGQIVE 97 + G LD A+G+L + +G + + ++ K Y V LG+ TD DG++VE Sbjct: 34 KVGVGHRLDAQASGVLVLGVGHGCRLLTDMYNAHLTKDYTVRGLLGKATDDFREDGRLVE 93 Query: 98 ERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVY 156 + + E+L L +G ++ MYS L + ++ YE A +G+ P P+ + Sbjct: 94 KTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLIT 153 Query: 157 ELLFIRHEGNELELEIHCSKGTY--IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV 214 + + E LE+ C T +R ++ ++G +L A +RR + ++ + Sbjct: 154 GIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGLELKTTAVCTQVRRTRDGFFTLDSAL 213 Query: 215 --TLEHLRELVEQAEQQDIPAAELLDPLLMP 243 T L + + A L+ L P Sbjct: 214 LRTQWDLTNIQDAIRAATPQVAAELEKSLSP 244 >UniRef50_B9FC36 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9FC36_ORYSJ Length = 347 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 87/217 (40%), Gaps = 41/217 (18%) Query: 28 ALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTD 87 + +KR+ N+ GH+G LDP TG L +C+ AT+ + + K Y +AR Sbjct: 159 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAA-- 216 Query: 88 TSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP 147 A AL+ G + Q + SA+K Sbjct: 217 -------------------DTARALEALTGAMFQRLPLISAVK----------------- 240 Query: 148 REARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAV 205 R+ R T+YE + H+ + I C GTY+RT+ LG LG GAH+ L R+ Sbjct: 241 RQLRVRTIYESKLLEHDAERHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELHRVRS 300 Query: 206 SKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 + + MVT+ + + ++ + A L+ Sbjct: 301 GIHGEQDNMVTMHDVMDARQEFTSEIPDALNKLNTYF 337 >UniRef50_O95900 Probable tRNA pseudouridine synthase 2 n=22 Tax=Tetrapoda RepID=TRUB2_HUMAN Length = 331 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 7/211 (3%) Query: 40 RAGHTGALDPLATGMLPICLGEATKFSQYLLDSD--KRYRVIARLGQRTDTSDADGQIVE 97 + G LD A+G+L + +G + + ++ K Y V LG+ TD DG++VE Sbjct: 90 KVGVGHRLDAQASGVLVLGVGHGCRLLTDMYNAHLTKDYTVRGLLGKATDDFREDGRLVE 149 Query: 98 ERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVY 156 + + E+L L +G ++ MYS L + ++ YE A +G+ P P+ + Sbjct: 150 KTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLIT 209 Query: 157 ELLFIRHEGNELELEIHCSKGTY--IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV 214 + + E LE+ C T +R ++ ++G +L A +RR + ++ + Sbjct: 210 GIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGLELKTTAVCTQVRRTRDGFFTLDSAL 269 Query: 215 --TLEHLRELVEQAEQQDIPAAELLDPLLMP 243 T L + + A L+ L P Sbjct: 270 LRTQWDLTNIQDAIRAATPQVAAELEKSLSP 300 >UniRef50_UPI0001976FFF Pseudouridine synthase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI0001976FFF Length = 430 Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 96/249 (38%), Gaps = 47/249 (18%) Query: 105 AEQLAAALD-TFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH 163 +++ + G IEQ+P+ +SA+K G++ Y+ AR G +V +AR ITV + Sbjct: 183 RDRIDDIIALQLTGSIEQVPNTFSAIKINGQRAYDLARDGKDVQLKARRITVSAFGVLDV 242 Query: 164 EGN--------------------------------ELELEIHCSKGTYIRTIIDDLGEKL 191 ++++ + CS GTYIR + DLG L Sbjct: 243 RFGYAPTRQLGLPLVSAADGRATTERDDAEATPVIDVDVRVSCSAGTYIRALGRDLGAAL 302 Query: 192 GCGAHVIYLRRLAVSKYPVE--RMVTLE-HLRELVEQAEQQDIPAAELLD--------PL 240 G G H+I LRR V + V ++T RE ++ +LD Sbjct: 303 GVGGHLIRLRRTRVGGFDVSSPNVITAHVETREYTDRNGNHQSRNRAVLDVIGDELAGKA 362 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 L +D+ P++ + +V + G + + G ++G+ + + E Sbjct: 363 LTMLDAARGTMPLLAITDQDAVNLRYGRRIPYD---IHGTAAAYLPQSGEVVALVERAKR 419 Query: 301 GRVAPRRLV 309 G P + Sbjct: 420 GEAKPATVF 428 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 4/107 (3%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 +G+L++DKP+G++S+D + + + + GH G LDP+ATG+L + G AT+ Sbjct: 29 PATPTSGLLVVDKPRGVTSHDIVAAARGALHMKKVGHAGTLDPMATGVLVVGFGNATRLL 88 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALD 113 ++++ DK Y RLGQ T T DADG+++ S E+ L Sbjct: 89 NHIVEHDKTYEATIRLGQSTTTDDADGELLSAT----SPERWQELLA 131 >UniRef50_Q6C7U6 YALI0D25234p n=1 Tax=Yarrowia lipolytica RepID=Q6C7U6_YARLI Length = 448 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 16/167 (9%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIY-------------NANRAGHTGALDPLATGMLPIC 58 NGV ++DKP+ + S ++K+K + N + GH GALDP ATG+L I Sbjct: 5 NGVFVVDKPKNIGSTQVVEKLKWTFINAAGGKQKGGSRNPLKIGHGGALDPFATGVLAIG 64 Query: 59 LGEATKFS-QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFR 116 +G TK +DK Y +G T T D +G +V+ +AE++ L FR Sbjct: 65 VGAGTKQLGDMTHSTDKEYIATVFMGHETTTCDREGHVVKSDDSSHITAEKIEETLAKFR 124 Query: 117 GDIEQIPSMYSALKYQGKKLYEYARQGIEVP-REARPITVYELLFIR 162 GDI+Q P +YS++ G +L++YAR G++VP +R V +L + Sbjct: 125 GDIKQFPPVYSSVSVDGVRLWDYARNGLKVPYIPSRECHVSKLELVS 171 Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 166 NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 ++ S GTYIR + +D+ E+LG H++ LRRL + V+ L+ + E+ Sbjct: 297 PVFQIRAAVSSGTYIRQLANDICEELGVSGHLVELRRLTQGDFGVDNCFPLDKILNQPEE 356 Query: 226 -AEQQDIPAAELLDPLLM 242 E + A + + Sbjct: 357 IWEHEITKALKEGPKYVY 374 >UniRef50_B2W7I6 tRNA pseudouridine synthase B n=2 Tax=Pleosporineae RepID=B2W7I6_PYRTR Length = 459 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 86/179 (48%), Gaps = 31/179 (17%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDAL----------------------------QKVKRIY 36 + + + G+ ++KPQ SS L K K I Sbjct: 6 KSNPKVLEGIFAINKPQWASSAGVLRDLQEHFSRSSLFAPWLESQKRSLILSQAKQKHIN 65 Query: 37 NAN-RAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI 95 N + GH G LDP+ATG+L + +G+ TK Q L+ K Y + G TD+ DA G++ Sbjct: 66 NLKVKLGHGGTLDPMATGVLIVGMGKGTKCLQRFLECTKTYECVVLFGAATDSYDAVGKV 125 Query: 96 VEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEV-PREARP 152 V + P + E + L FRG I Q PS++SALK GKK+YEYAR G ++ ARP Sbjct: 126 VSKAPYEHVTKELVEERLAQFRGKILQKPSVFSALKVDGKKMYEYARAGGDIPEVAARP 184 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 1/76 (1%) Query: 162 RHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE-RMVTLEHLR 220 + L + + G Y+R++ DLG + L R Y + ++ L Sbjct: 322 HPQPPAARLRMTVTSGFYVRSLCHDLGLACSSLGLMSSLIRSRQGAYTLNKNVLEYSDLE 381 Query: 221 ELVEQAEQQDIPAAEL 236 + + + Sbjct: 382 DPAKWEPVLQKQLEDF 397 >UniRef50_D1Y7J6 tRNA pseudouridine synthase B (Fragment) n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7J6_9BACT Length = 167 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 3/157 (1%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYN--ANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 NG+L+LDK G S + V + + GH G LD A+G L + G AT+ S+ + Sbjct: 3 NGILVLDKIYGAPSRGCVTAVSKALGGRKQKVGHAGTLDTSASGTLVLLAGSATRLSEAV 62 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 ++ K Y G T T DA G+ + E P + L AL F+G Q P SA Sbjct: 63 MNLPKSYLARVTFGWETSTDDATGEPLSEAVPAAYDEAALRGALPAFQGVRLQTPPRVSA 122 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG 165 +K G + ++ AR G E RP+ V + ++ + Sbjct: 123 VKVDGARAHKLARSGREPDIRPRPVNVVSIRYLGRDE 159 >UniRef50_Q5KKZ0 Pseudouridylate synthase 4, putative n=2 Tax=Filobasidiella neoformans RepID=Q5KKZ0_CRYNE Length = 443 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 85/200 (42%), Gaps = 32/200 (16%) Query: 1 MSRPRRRGR-DINGVLLLDKPQGMSSNDALQKV-----------------------KRIY 36 M + +NG+ + KP G SS + ++ KR Sbjct: 1 MPKALPTPTLPLNGLFPIAKPSGKSSMRVIDRITPLLLDSKLFDDPVKRAQPQMKGKRKK 60 Query: 37 NAN----RAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDAD 92 N + G G LDPLA G+L + + TK L+ K Y I +G T + DAD Sbjct: 61 NLTQFGLKIGQGGTLDPLADGVLVLGVNRGTKHLNQFLECSKEYESIGLIGATTTSMDAD 120 Query: 93 GQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPR--E 149 ++ P + E + LD FRG+I Q+P ++SALK GK LYEYAR+ +PR Sbjct: 121 DPVLSTAPWEHITREDVEKVLDRFRGEIMQVPPIFSALKMDGKPLYEYARESKPLPRPIP 180 Query: 150 ARPITVYELLFIRHEGNELE 169 AR V + I + Sbjct: 181 ARKCQV-SIELIDFTPASVT 199 Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 164 EGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV 210 + + S GTY+R+I++D+G LGCGAHV+ L R ++ + Sbjct: 279 RPPTFTVRMTVSSGTYVRSIVNDIGLALGCGAHVVKLTRTRQGEFSL 325 >UniRef50_A4YCT2 PUA domain containing protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YCT2_METS5 Length = 233 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 95/261 (36%), Gaps = 59/261 (22%) Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 + S K Y + + F E+L A F G I Q P + S+ Sbjct: 4 VTKSGKEYVCLMEVH-----------------CDFQEERLRAIAKEFVGTIYQKPPVRSS 46 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K R R +Y L + EG + ++I GTY+R I D+G Sbjct: 47 VK-----------------RRVRKRKIYSLEVLEMEGRRVLMKISSEPGTYMRKICHDMG 89 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCGAH+ LRR + + +VTL+ + E + + + L +L+PM+ Sbjct: 90 ILLGCGAHMRELRRTRSGIFTEDTVVTLQQVSEALYLYR--NCGEEDELRRILIPMEMAF 147 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR------ 302 P + + + G+P+ G+V + G + + EG Sbjct: 148 CGIPKIIVDDETVNSLAYGSPLMAP-----GIVAFQGFKKGDTVALITWKGEGIALGKAL 202 Query: 303 ------------VAPRRLVVE 311 V P R++++ Sbjct: 203 VDSVSMGKRGEVVKPERVLMD 223 >UniRef50_P48567 tRNA pseudouridine synthase 4 n=13 Tax=Saccharomycetaceae RepID=PUS4_YEAST Length = 403 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 41/193 (21%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIY--------------------------------NA 38 +NG+ ++KP G++SN + K++ Sbjct: 1 MNGIFAIEKPSGITSNQFMLKLQHALTKSQVFSKEIQRATAERKQQYEKQTGKKASKRKL 60 Query: 39 NRA-----GHTGALDPLATGMLPICLGEATK-FSQYLLDSDKRYRVIARLGQRTDTSDAD 92 + GH G LDPLA+G+L I +G TK + YL + K Y A G T + D + Sbjct: 61 RKVSKVKMGHGGTLDPLASGVLVIGIGAGTKKLANYLSGTVKVYESEALFGVSTTSGDVE 120 Query: 93 GQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPR--E 149 G+I+ + V + + L + F G ++Q P +Y+ALK GK L+EYAR+G +PR E Sbjct: 121 GEILSQNSVKHLNFDDLKTVEEKFVGQLKQTPPIYAALKMDGKPLHEYAREGKPLPRAIE 180 Query: 150 ARPITVYELLFIR 162 R +T+Y+L Sbjct: 181 PRQVTIYDLKVFS 193 Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 44/80 (55%), Gaps = 4/80 (5%) Query: 162 RHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 + +L + + S GTYIR+++ D+G+ + +++ L RL + +E+ ++ + Sbjct: 267 SYRAPKLHFKANVSSGTYIRSLVSDIGKSMRSSCYMVKLIRLQQQDWSLEK----NNVFQ 322 Query: 222 LVEQAEQQDIPAAELLDPLL 241 L + E+ + +++L+ +L Sbjct: 323 LTDFTERDEKVWSKVLEKVL 342 >UniRef50_D1I9G8 Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I9G8_VITVI Length = 476 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 60/317 (18%), Positives = 102/317 (32%), Gaps = 117/317 (36%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L LDKP SS++ + +KRI + GH+G LDP TG L + Sbjct: 93 GILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVL-------------- 138 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 ++A AL+T G + Q P + SA+K Sbjct: 139 ------------------------------PDVAKVARALETLTGAVFQRPPLISAVK-- 166 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 R+ R T+YE R Sbjct: 167 ---------------RQLRIRTIYE-----------------------R----------- 177 Query: 193 CGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 H+ LRR+ + MVT+ + + Q + L ++MP++ + Y Sbjct: 178 ---HMQELRRVRSGILGEKDNMVTMHDVMDA--QWVYDNYRDESYLRRVIMPLEVVLTSY 232 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEID----- 298 + + ++ G + G E +V +T +G+ E+ Sbjct: 233 KRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGEEVVLMTTKGEAIALGIAEMTTAVMA 292 Query: 299 --DEGRV-APRRLVVEY 312 D G V +R+V++ Sbjct: 293 TCDHGVVARIKRVVMDR 309 >UniRef50_C3YU77 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YU77_BRAFL Length = 261 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 5/171 (2%) Query: 55 LPICLGEATKFSQYLLDS--DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAA 111 L + + + K + + D+ ++Y V + G TD DA G++VE S E+LA Sbjct: 48 LVLGIRDGIKKVRAMFDAHYSRQYIVEGKFGLATDNHDASGKVVERTTYDHISGEKLARV 107 Query: 112 LDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELE 171 + + + + + + Y+ + Q ++ YE A QG+ PR P V + + + LE Sbjct: 108 VSFLQRNHQNLTTEYAGVDIQSQEAYELASQGLLRPRMTSPPLVLAMRCLEYRPPNFTLE 167 Query: 172 IHCSKGT--YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 + C T ++R ++ D+G +L A +RR + + + ++H + Sbjct: 168 VQCVHETPQWLRKLVHDIGLELRSTAVSTKVRRTRDGYFTSDDALLIKHCK 218 >UniRef50_Q7T013 Novel protein (Zgc:91836) n=8 Tax=Clupeocephala RepID=Q7T013_DANRE Length = 343 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 12/190 (6%) Query: 36 YNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD--KRYRVIARLGQRTDTSDADG 93 ++ G LD ++G+L + +G+ + L S + Y + G+ TD Sbjct: 90 FHKVHVGVGHRLDAFSSGVLVLGVGKGNSVLENLCKSHVTRDYTIEGEFGKATDNF---- 145 Query: 94 QIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPI 153 + ++L L +G ++ YS ++ Q ++ YE A +G+ P P Sbjct: 146 ----SHTDHITHDKLERVLAMLQGSNQKALITYSQVELQTQEAYELAARGLLYPDGKSPP 201 Query: 154 TVYELLFIRHEGNELELEIHCSKGT--YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE 211 + L I+ LE+ C T Y+R +I ++G +L A +RR + VE Sbjct: 202 ILTGLRCIKFNPPHFTLEVRCVNETQKYLRKLIHEVGLELRASAVCTKVRRTRDGPFKVE 261 Query: 212 RMVTLEHLRE 221 +T +H Sbjct: 262 NALTRQHWTA 271 >UniRef50_D2VC43 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VC43_NAEGR Length = 233 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 40/224 (17%) Query: 37 NANRAGHTGALDPLATGMLPICL-GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI 95 R GH G LDP A G+L I + G+ TK +YL +K Y + + G T + DAD Sbjct: 11 KDLRVGHGGCLDPSAHGVLMIGVNGQGTKALKYLDRDEKVYDFVIQCGSSTPSYDADTVK 70 Query: 96 VEERPVTF---------SAEQLAAALDTFRGD----IEQIPSMYSALKYQGKKLYE---- 138 + + EQ+ ++ + + I Q ++SA+K GK+L+ Sbjct: 71 FATYCPHYRYFFDKNCQTIEQVNELVNQYLKERNNVIVQKTPVFSAVKIGGKRLFSHGYN 130 Query: 139 -----------------YARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTY 179 + + +R I V + E +L CS GTY Sbjct: 131 NLRKMEQQDEEERKYRGLYCEEETLNLPSRSIRVDRIECTHINKELGQLSFSCTCSTGTY 190 Query: 180 IRTIIDDLGEKLG-CGAHVIYLRRLAVSKYPVERMVTLEHLREL 222 +R + ++ L CGA+V L R + K M+ L+ + L Sbjct: 191 VRILGYEIAHLLEVCGAYVTDLYRTRIGKNT--NMLKLDEIGNL 232 >UniRef50_B9QMG1 tRNA pseudouridine synthase B, putative n=3 Tax=Toxoplasma gondii RepID=B9QMG1_TOXGO Length = 599 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 44/203 (21%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANR-------------------------------- 40 G++ + KP+G++S D ++V + + R Sbjct: 252 GLVGVVKPKGLTSMDVCRRVSELLKSYRDSRDRTLVSSGVDETEDLLPDVLHSKGEVGEM 311 Query: 41 ----------AGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSD 90 GH G LDP ATG+L + +GE TK ++ L KRY+ + RLG TDT D Sbjct: 312 QTRTGRRKTGVGHGGTLDPAATGVLILGIGEGTKRLRHFLTGWKRYKAVVRLGVTTDTLD 371 Query: 91 ADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPRE 149 ++G++V E + L L +F G Q P ++SA + +G ++Y+ AR E ++ Sbjct: 372 SEGRVVAEENWRHVTLATLKRVLPSFLGKQLQQPPLFSAKRVKGVRMYDIARYIQE-QQD 430 Query: 150 ARPITVYELLFIRHEGNELELEI 172 R + L H GN + + Sbjct: 431 RRSQKSFPLGDAVHSGNNHDAFV 453 Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 17/118 (14%) Query: 112 LDTFRGDIEQIPSMY----SALKYQGKKLYEYARQGIEVPRE-ARPITVYELLFIR---H 163 + + Q P SAL + K V I + EL + Sbjct: 468 MQQQLPERLQKPPSVGGGNSALHHAVTK---------HVSLPNPCEIEISELELVDEEEF 518 Query: 164 EGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 E + + CSKGTYIR + D+ + G H+ L R + + +E V E L Sbjct: 519 EMPHFAISVTCSKGTYIRQLAADIAARCGTVGHLTELTRTFQAPFRLEDCVNFEDLTA 576 >UniRef50_A4NYM2 tRNA pseudouridine synthase B n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NYM2_HAEIN Length = 151 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 85/156 (54%), Gaps = 9/156 (5%) Query: 157 ELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTL 216 FI + L LE+HCSKGTYIRT++DDLGE LGCGAHV LRR AV+ YPV M+ + Sbjct: 2 NFNFIDYNAPYLTLEVHCSKGTYIRTLVDDLGEVLGCGAHVTMLRRTAVADYPVAEMMPI 61 Query: 217 EHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP 276 L+ L E LD LL+P D+ S P ++L + S G V+ + Sbjct: 62 NELQLLAES------FPLSELDRLLLPTDTAVSKLPALHLDVEQSKAIGFGQRVKFANEQ 115 Query: 277 L-EGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVE 311 G VR+ EN F+G+ ID + P+RL+ + Sbjct: 116 QLGGQVRLFSAEN-LFLGVALIDGN-IIRPQRLITQ 149 >UniRef50_B7QF44 Putative uncharacterized protein (Fragment) n=1 Tax=Ixodes scapularis RepID=B7QF44_IXOSC Length = 325 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 83/210 (39%), Gaps = 11/210 (5%) Query: 52 TGMLPICLGEATKFSQYLLDSD--KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQL 108 +G++ + + + K L S+ + Y + G+ +DT D +IVE+ + ++ Sbjct: 106 SGVVVMGVNASHKKLLKLRHSNQLRTYELRGEFGKASDTLTPDSKIVEQATYGHITIAKM 165 Query: 109 AAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL 168 L + + + YS + ++ YE A G P + P +Y + + Sbjct: 166 ERLLSSIQATHQVQAFKYSGVHMDTQEAYELAAAGTVRPADKSPTLIYNIRCTEFDLPYF 225 Query: 169 ELEIHC--SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERM-----VTLEHLRE 221 LE+ C +Y+ ++ D+G +L A +R++ ++ ++ +LEH+ Sbjct: 226 TLEVSCLNEDASYLLQLVHDIGLRLRSCALCHRVRQVRYGQFGLDHALLRKHWSLEHILN 285 Query: 222 LVEQAEQQ-DIPAAELLDPLLMPMDSPASD 250 + E P L+ +D Sbjct: 286 NINHCRHLVTWEQLEPSSPHLVDVDVSFGS 315 >UniRef50_B6W931 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W931_9FIRM Length = 156 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 14/166 (8%) Query: 149 EARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKY 208 E + I +Y+ + L I CSKGTYIRT+++DLGE L A V LRR+ V + Sbjct: 3 EKKKIKIYDFEILDFNFPYARLRISCSKGTYIRTLVNDLGEILQTFATVKELRRIKVGDF 62 Query: 209 PVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGN 268 V+ + +E ++ A+ + L+P+D Y + L + NG Sbjct: 63 DVKDAIKMEDFEKMQ----------ADQIIKKLIPIDKALCQYEKIVLDKSYYKQATNGM 112 Query: 269 PVRTS-GAPLEGLVRVTEGENGKFIGMGEIDDEGR-VAPRRLVVEY 312 ++ G ++ +RV G+ FIG+GE +E + + +++ E Sbjct: 113 TMKVDYGKNVDNYLRVYVGD--LFIGLGEYKNENKTLKIKKVFYER 156 >UniRef50_A9BKY1 Cbf5 n=1 Tax=Cryptophyta RepID=A9BKY1_9CRYP Length = 382 Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 116/326 (35%), Gaps = 59/326 (18%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++ NG++ DKP G +S++ L +++I G +G + + +G++ F Sbjct: 39 EKKNKNGLINFDKPFGCNSHEILHWIEKILKLKTIKCFGKAPSNISGCMILGIGKS--FL 96 Query: 67 QYLLDSDKR-YRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAA--ALDTFRGDIEQIP 123 L S K Y ++ E A F ++ + Sbjct: 97 NKLEFSSKSNYILVYTF------------------PNLPYENFRKINAWKKFNFNLFKNY 138 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREAR-PITVYELLFIRHEGNELELEIHCSKGTYIRT 182 ++S +K Q L Q + + R I V+E+ ++ I ++ Sbjct: 139 FVFSKIKQQL--LLNRIFQASHLEFDIRKKIGVFEI--------TVQFPIST------QS 182 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV-TLEHLRELVEQAEQQDIPAAELLDPLL 241 +I +LG ++ +RR+ + E + T L + Q ++ ++ Sbjct: 183 LIINLGFLFRKKIKLLEIRRIRIGSLTEEESLATFHDLLDA--QWLKKHFKKNFFFRKII 240 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL--------EGLVRVTEGENGKFIG 293 +P+D S+Y V + +S G + +SG E +V + + IG Sbjct: 241 LPLDVLFSEYRRVLVKDSSINSICFGAGLTSSGILKIEPNIEIGEKIVLLNFQGDPIAIG 300 Query: 294 MGEIDDEGRVAP--------RRLVVE 311 + +I+ +++ ++ Sbjct: 301 VSKINSYSLFNSFSGLVVETKKVFIQ 326 >UniRef50_B5DZE3 GA24084 n=5 Tax=Diptera RepID=B5DZE3_DROPS Length = 315 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 88/265 (33%), Gaps = 59/265 (22%) Query: 9 RDINGVLLLDKPQGM--------------------------------------------- 23 R +NGVL + KP GM Sbjct: 14 RHLNGVLNVYKPAGMKVGHVRSAVLSNICKGLNELKQRDPRRLPQNRPLLGTGTAADSVL 73 Query: 24 ----SSNDALQKV-----KRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD- 73 +S D V + + R +L +G+L + + + S + + Sbjct: 74 HNIATSTDLSDDVLSTGPRYMPEDIRCAAVASLGQHTSGVLLFGINKGLRQSSRIQKNRP 133 Query: 74 -KRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + Y + R+G T+ D I SAE+++ + + ++ + Sbjct: 134 VRVYHITGRMGTATENHLPDTHITARSNHKHVSAERISGLAASMQASHQRKMYELCGVDL 193 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT--YIRTIIDDLGE 189 Q + YE A +G+ P + +Y + I E LE+H T Y+ ++ D+ Sbjct: 194 QTQAAYELACKGLIRPADNSLPVIYGIKLIHFERPHFTLELHSINETQEYLAALVHDMAL 253 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMV 214 +L AH LR + S + V + Sbjct: 254 ELRTVAHCSQLRCIRHSHFDVTDSL 278 >UniRef50_D2EFU3 PUA domain containing protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFU3_9EURY Length = 223 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 87/200 (43%), Gaps = 25/200 (12%) Query: 102 TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI 161 + L D F G I Q+P + S +K R+ R +Y + Sbjct: 6 EVDEQLLRDTFDKFIGKIMQLPPVRSHVK-----------------RQYRQREIYYSDIL 48 Query: 162 RHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV-ERMVTLEHLR 220 G ++ ++ GTYIR +I D+GE+L GAH++ LRR VS + +VTL+ L Sbjct: 49 EINGRDVLFKVGVESGTYIRKLIHDMGEELKVGAHMVELRRTKVSTLSEKDNLVTLQDLD 108 Query: 221 ELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 + V E+++ +LL+ L ++S P V + + G+P+ G+ Sbjct: 109 DAVYFYEKEN--DDKLLNKCLDSIESAVDFIPKVFISDGAVDPVCRGSPLAVP-----GI 161 Query: 281 VRVTEGENGKFIGMGEIDDE 300 V+ + + +G+ + E Sbjct: 162 VKFNDFGKEEVVGIMTLKGE 181 >UniRef50_UPI0000D56069 PREDICTED: similar to AGAP002077-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D56069 Length = 304 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 10/188 (5%) Query: 63 TKFSQYLLDS--DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 TK ++ + ++ + YR+ +LG+ TD + DG++VE E + L T + Sbjct: 112 TKVAKLIRENRPTRCYRLSGKLGEATDNAFKDGKVVERTTWRHVKLENMNRFLATLQASH 171 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHC--SKG 177 ++ + Q ++ Y+ A QG P ++ +Y + ++ E E +EI C Sbjct: 172 QKEMFKSCGIDLQSEEAYKLACQGPIRPANSKLPVIYGIKCVKFEPPEFVIEIQCINEYE 231 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERM-----VTLEHLRELVEQAEQQDIP 232 TY+R++I ++G KL AH ++ + S + VE TL+ + +EQ Q Sbjct: 232 TYLRSLIHEIGMKLHSSAHCTAIQCIRHSYFTVENALLRKHWTLQDIITNMEQCIQIMDE 291 Query: 233 AAELLDPL 240 ++ Sbjct: 292 HENIIRQK 299 >UniRef50_UPI00006A5396 PREDICTED: similar to TruB pseudouridine (psi) synthase homolog 2 isoform 1 n=2 Tax=Ciona intestinalis RepID=UPI00006A5396 Length = 326 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 6/202 (2%) Query: 21 QGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQYL--LDSDKRYR 77 S + + + LD A G+ I + + K + L + YR Sbjct: 78 PDWSDHILVTGPRYRNEDFHISFGNLLDADACGVQVIGVKKKGEKQLKRLKYMKLSSTYR 137 Query: 78 VIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKL 136 + G + + +I+E S++++ L +G S L+ K Sbjct: 138 AFGQFGLTSMSHSPKTRILERSTWDHLSSDKINRVLMAMQGAHRNAMLRDSGLELSSHKA 197 Query: 137 YEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT--YIRTIIDDLGEKLGCG 194 YE A +G+ P E + +L LE+ C T +IR ++ ++ +L Sbjct: 198 YELASKGLLRPMEGNEPVIVDLKLSSLNLPHFSLEVTCLNDTCGFIRKLVHEVAAELRSS 257 Query: 195 AHVIYLRRLAVSKYPVERMVTL 216 A L+R VS + + TL Sbjct: 258 AICTKLQRQRVSVFSHDNKHTL 279 >UniRef50_UPI000058490A PREDICTED: similar to TruB pseudouridine (psi) synthase homolog 2 n=2 Tax=Strongylocentrotus purpuratus RepID=UPI000058490A Length = 352 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 82/221 (37%), Gaps = 33/221 (14%) Query: 47 LDPLATGMLPICLGEATKFSQYLLDS--DKRYRVIARLGQRTDTSDADGQIVEERPVTFS 104 LD + G++ + + + K + ++Y + R G TDT D+ G++ ++ + Sbjct: 105 LDTKSCGVMVLAVRDGKKLVSQYQTARLPRQYTIRGRFGVATDTHDSQGKVWQKTTYGET 164 Query: 105 AEQLAAALDTF-----RGDIEQ---------IPSMY----------SALKYQGKKLYEYA 140 + + F I Q ++ S + Q ++ YE A Sbjct: 165 LKDFKLGIGPFEQIAVTKSISQAILQGLLAFKVPLFDCFQRELIRQSGVDIQSQEAYELA 224 Query: 141 RQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT--YIRTIIDDLGEKLGCGAHVI 198 +G+ P + ++ E E ELE+ T Y+R +I D+G++L A Sbjct: 225 VRGLLHPVGRTNPLLTDITCTMFEPPEFELELTSYADTAQYLRKVIHDIGQELKSSAIAT 284 Query: 199 YLRRLAVSKYPVERM-----VTLEHLRELVEQAEQQDIPAA 234 +RR + +E L + +E+ P+ Sbjct: 285 QVRRTHDGPFNIEHALLKKHWKLNDIAAAIEECRPLVRPSE 325 >UniRef50_UPI000179347F PREDICTED: similar to CG7849 CG7849-PB n=1 Tax=Acyrthosiphon pisum RepID=UPI000179347F Length = 316 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 82/183 (44%), Gaps = 8/183 (4%) Query: 43 HTGALDPLATGMLPICLGEATKFSQYLLDSD--KRYRVIARLGQRTDTSDADGQIVEERP 100 H G +G+ I L + TK ++ L ++ + Y + +LG T DGQ+VE+ Sbjct: 96 HLGK---RVSGVCVIGLNKGTKMARILQNNYPLRTYHLHGQLGIMTKNMYIDGQVVEKGR 152 Query: 101 VT-FSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELL 159 E + + T + ++ + + Q + Y+ A +G+ P + +Y + Sbjct: 153 FDFVKRENVDKLMSTIQASNQKKMFELANVDTQTQTAYDLATKGLIRPASTKSPLIYGIK 212 Query: 160 FIRHEGNELELEIHC--SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLE 217 I + +E++ +Y+ +++ ++G KL C A +R + S + +++ + ++ Sbjct: 213 CISLDLPNFIIEVNIINEYESYLLSLVHEIGLKLRCSATCTAIRCIRYSSFTIQQALLMK 272 Query: 218 HLR 220 H Sbjct: 273 HWN 275 >UniRef50_UPI0000519F9E PREDICTED: similar to CG7849-PB, isoform B n=2 Tax=Apocrita RepID=UPI0000519F9E Length = 319 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 81/214 (37%), Gaps = 13/214 (6%) Query: 51 ATGMLPICLGEATKFSQYLLD--SDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQ 107 +G+L + + + + + + Y++ LGQ TD G+IVE+ Sbjct: 106 ISGVLVCGINKGNQLIHKIKENMCIRFYKIKGLLGQATDNYFHTGKIVEKSKYTHIKRGH 165 Query: 108 LAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE 167 + + + ++ + Q + YE A QG P + +Y + E Sbjct: 166 IDKLCSSMQSSHQKKMFELCGVDIQSQAAYELAVQGPIRPANSNIPMIYTIKCTDFSPPE 225 Query: 168 LELEIHCSKG--TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERM-----VTLEHLR 220 LE+ C+ Y++TII +LG +L A + + + +++ L+ + Sbjct: 226 FTLEVVCTNEYDLYLKTIIHELGMQLRSNATCTQIICIQDGLFNIQQALLSKYWNLKEIM 285 Query: 221 ELVEQAEQQDIPAAELL---DPLLMPMDSPASDY 251 ++ ++ +L + L P++ Y Sbjct: 286 YNMQMCKKIIDKNDHILCQENAALKPINHSIEAY 319 >UniRef50_Q29QN4 CG7849, isoform B n=10 Tax=Drosophila RepID=Q29QN4_DROME Length = 317 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 71/170 (41%), Gaps = 5/170 (2%) Query: 50 LATGMLPICLGEATKFSQYLLDSD--KRYRVIARLGQRTDTSDADGQIV-EERPVTFSAE 106 +G+L + S + + + Y +I LG T+ + D +++ SA+ Sbjct: 109 HTSGVLLFGINRGAGQSSSIRKNRPVRVYHLIGHLGIATENNLPDSRVIMRSNHRHVSAD 168 Query: 107 QLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN 166 ++++ + + ++ + Q ++ YE A +G+ P + VY + I + Sbjct: 169 RISSLAASMQASHQRKMFELCGVDLQTQEAYELACRGLLRPADDSQPVVYGIKLIHFDRP 228 Query: 167 ELELEIHCSKGT--YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV 214 LE+H T Y+ T++ D+ L AH LR + + + V + Sbjct: 229 HFTLELHAINETQEYLATLVHDMALDLRTVAHCSQLRCVRHAHFDVTDSL 278 >UniRef50_Q4UE86 RNA modification (Pseudouridylation) protein TruB family member, putative n=1 Tax=Theileria annulata RepID=Q4UE86_THEAN Length = 171 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 20/137 (14%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNAN---------RAGHTGALDPLATGMLPICLGEA 62 NG+L + KP G+SS K+K I N R GH G LD G+L I +GE Sbjct: 30 NGLLNVYKPYGVSSTYVCNKIKSIIEDNFPKNKRLKIRVGHGGTLDKYTEGVLAIGIGEG 89 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDA----------DGQIVEERPVT-FSAEQLAAA 111 TK + L DK Y G TDT+D G+ + + E L A Sbjct: 90 TKMLENYLKGDKEYICTGTFGFETDTNDILVSLTKIIVDQGKTIYTANWEYITDELLGKA 149 Query: 112 LDTFRGDIEQIPSMYSA 128 + + +G Q YS Sbjct: 150 IRSLKGFQVQESPTYSG 166 >UniRef50_UPI0001699077 tRNA pseudouridine synthase B n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699077 Length = 148 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 27/163 (16%) Query: 108 LAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE 167 + L FRG+ +Q+P MYSA+ ++G++LY AR+GIEV RE R I ++ L + E Sbjct: 1 IRDTLADFRGEQQQLPPMYSAIIHKGERLYNLARKGIEVEREPRTIHIHALELLSCE--- 57 Query: 168 LELEIHCSKGTYIRTIIDD--LGEKLGCGAHVIYLRRLA----------VSKYPVERMVT 215 + R + D G + G G LRRL V Y MVT Sbjct: 58 -RARVRARCALLQRHLCADPRRGYRQGIG-----LRRLCQAGPCGAAPGVGPYDGAEMVT 111 Query: 216 LEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPL 258 L L+E ++ ++ D +L+P++S ++P V L Sbjct: 112 LAELKEAWQERRFDEM------DQMLLPLESALENWPEVVLSP 148 >UniRef50_UPI0000E46612 PREDICTED: similar to TruB pseudouridine (psi) synthase homolog 1 (E. coli), partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E46612 Length = 164 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 61/155 (39%), Gaps = 38/155 (24%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVK----------------------------------- 33 +NG+ + KP G++S + +VK Sbjct: 10 SKLNGLFAVRKPMGITSAKVVDRVKAALLRDLKKVEISANHEGDEQACSALGCPDKQRVD 69 Query: 34 --RIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDA 91 R + GH G LD ATG+L I G TK L K YR RLG+ TDT DA Sbjct: 70 GQRRIKLPKMGHGGTLDMNATGVLVIGCGRGTKLLSSYLQGGKVYRAQGRLGRATDTMDA 129 Query: 92 DGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSM 125 G+ VE + L L++F GDI Q+P + Sbjct: 130 SGKEVETAQFDHVTESGLERCLESFVGDILQVPPV 164 >UniRef50_B4LIK4 GJ21442 n=1 Tax=Drosophila virilis RepID=B4LIK4_DROVI Length = 318 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 3/144 (2%) Query: 74 KRYRVIARLGQRTDTSDADGQI-VEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 + Y V AR+G T+ D + V +AE+++ + + ++ + Q Sbjct: 135 RVYHVTARMGTATENHLPDSHVTVRANNRHVTAERISGLASSMQASHQRKMYELCGVDLQ 194 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHC--SKGTYIRTIIDDLGEK 190 + YE A +G+ P + VY + I E LE+H Y+ ++ D+ + Sbjct: 195 TQAAYELACKGLLRPADNSQPVVYGIKLIHFERPHFTLELHTINESEQYMAALVHDMAIE 254 Query: 191 LGCGAHVIYLRRLAVSKYPVERMV 214 L AH LR + + + V + Sbjct: 255 LRTVAHCSQLRCIRHAHFDVTDSL 278 >UniRef50_A8NNZ6 CG7849-PB, putative n=1 Tax=Brugia malayi RepID=A8NNZ6_BRUMA Length = 351 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 88/230 (38%), Gaps = 16/230 (6%) Query: 49 PLATGMLPICLGEATKFSQYLLDS--DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSA 105 P ++G+ + + + L D Y + +LG+ T + G++ E + Sbjct: 106 PASSGLCLFGINDGRDMLESLRDRIWVNEYVLKGQLGRGTVQNKIRGKVNRECDYEHITH 165 Query: 106 EQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG 165 + ++ L + +++ + + + ++ +E AR+G+ P+ +Y + I Sbjct: 166 QHMSRFLMRLQAHYKKLAFELANVDLESQEAFELARKGLPRPKVLGAPVIYFIKLIYFNL 225 Query: 166 NELELEIHCSKGT--YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV-----TLEH 218 + +HC +++ I+++ LG A L R+ + + + TL++ Sbjct: 226 PHFTINLHCVCKDDNFLQDFINEIALSLGSVASCRQLLRIQLGPFNCTHSLLDKHFTLKN 285 Query: 219 LRELVEQAEQQDIPAAELLDPLLM------PMDSPASDYPVVNLPLTSSV 262 + ++ E+ + D ++ +D +D + L Sbjct: 286 ILRNMQLCEKIIKYDEKTPDKGIVKATAQSSVDDILNDEFIETLDDEEEN 335 >UniRef50_UPI000186DFBE conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186DFBE Length = 308 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 90/278 (32%), Gaps = 61/278 (21%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYN----------------------- 37 MS+ + +NG++ + K G S + K++ Sbjct: 1 MSQAETAWKSLNGIINVYKSAGTSCSYVKHKIQSKLCSELNSLETRPVNKYIDLIQNNQQ 60 Query: 38 -------------ANRAGHTGA--------------LDPLATGMLPICLGEATKFSQYLL 70 A+ G L +G+L + + S+ L Sbjct: 61 DNQQALVKVRDSFADNILCVGPRYQPEDISISFPSPLGKNTSGVLVLGINRGKTLSKVLK 120 Query: 71 DSD--KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSM-- 125 + + K Y++ LGQ T D ++ + S + L +++ ++ Sbjct: 121 NLNFLKCYKIDGLLGQATTNFHIDATVIAKAKYSHISESLVHKTLASYQAASQKRLIEEY 180 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKG---TYIRT 182 YS Q ++LY+ G+ P+E Y + E +E++C + + T Sbjct: 181 YSN--TQSQELYDSLVAGLLRPKEILTPIFYSYKLVEFNPPEFTIEVYCINENESSLMNT 238 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 I +LG L A L+ + + + + + + Sbjct: 239 -IHNLGISLRSLATCTALKCVKYGFFGISDALLKKEWK 275 >UniRef50_Q609C4 TRNA pseudouridine synthase B, interruption-C n=1 Tax=Methylococcus capsulatus RepID=Q609C4_METCA Length = 122 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 11/129 (8%) Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G LGCGAHV LRR V+ + V + VTLE L + L PM Sbjct: 2 EDIGHALGCGAHVEVLRRTTVAGFSVAQAVTLEQLEAMAPADRLD----------CLRPM 51 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 DS +P L ++ F++G V P+ LVRV G D +GR+A Sbjct: 52 DSMVQHWPAAWLDAGTARLFRHGQAVEGGDFPVGELVRVYGGGGVFLGIGCS-DGKGRIA 110 Query: 305 PRRLVVEYP 313 PRR+VV + Sbjct: 111 PRRVVVPWS 119 >UniRef50_A8X1P5 Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae RepID=A8X1P5_CAEBR Length = 338 Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 46 ALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI-----VEERP 100 L ++G+ + + R T+ DG I + Sbjct: 101 PLATNSSGICLFGINDGCDL-----------VAELRAKSWTNVYRLDGLIKKPVENQSEV 149 Query: 101 VTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF 160 + + ++ L + ++ + + + +E AR+G + +Y + Sbjct: 150 LKVTRHRIEKVLSRMESEFRGASFRHANVDLESSEAFELARRGTPRAQLPGAQIIYSIDL 209 Query: 161 IRHEGNELELEIHCSKGT--YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH 218 + CS +R +I+ +G LG + +I ++R + E + + Sbjct: 210 NWFRSPRFSVTAQCSGEDDEMLRRLIEHIGSNLGMESAIIRIQRQNFGPFGSENALLEKQ 269 Query: 219 LR 220 + Sbjct: 270 IN 271 >UniRef50_Q9N3X3 Putative uncharacterized protein n=1 Tax=Caenorhabditis elegans RepID=Q9N3X3_CAEEL Length = 211 Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 5/142 (3%) Query: 84 QRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYA 140 T+ DG I + + S ++ L + ++ + + + +E A Sbjct: 4 SWTNVYRIDGIIKKSENIDVSKISKHRIEKVLSRLESEFRSASFRHANVDMESSEAFELA 63 Query: 141 RQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT--YIRTIIDDLGEKLGCGAHVI 198 R+G+ + VY + + + CS +R +I+ +G LG + I Sbjct: 64 RRGVPRAQLPGSQIVYSIDLNWFRSPKFSVTTQCSGEDDEMLRQLIEHIGSNLGTESTTI 123 Query: 199 YLRRLAVSKYPVERMVTLEHLR 220 L+R + + + + + Sbjct: 124 RLQRQNFGPFGSDNALLEKQIN 145 >UniRef50_B9F4Z0 Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=B9F4Z0_ORYSJ Length = 113 Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV+ L+KP + S++ + K + + + H G LDP TG L +C+ AT+ + L + Sbjct: 31 GVINLNKPSNLLSHEVITWNKNLLHIEKTSHNGTLDPKVTGNLIVCVNRATRLVKSWLGA 90 Query: 73 DKRYRVIARLGQRTD 87 +A Sbjct: 91 SNECICVACFHAIVP 105 >UniRef50_B7Q670 Putative uncharacterized protein n=1 Tax=Ixodes scapularis RepID=B7Q670_IXOSC Length = 213 Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 33/160 (20%) Query: 58 CLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFR 116 C+G +T ++ +++ + V RLG T T DA G +VE +P S E + ALD FR Sbjct: 40 CVGTSTNQLRWFRLANRGFVVRGRLGSETSTFDASGDVVETQPYHHVSPEAVERALDRFR 99 Query: 117 GDIEQ-IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCS 175 G Q +P G + V RP+ + + + + + L Sbjct: 100 GHFFQDVPPP-----PDGGRA-------SPVAPIQRPVVCHAIACAQLDLPDFSL----- 142 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVT 215 LG A + L ++ + +E + Sbjct: 143 --------------ALGSRACLTSLEQVRQGPFTLEHALP 168 >UniRef50_Q9SMH4 Trans-splicing factor Raa2, chloroplastic n=2 Tax=Chlamydomonas reinhardtii RepID=RAA2_CHLRE Length = 410 Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKF 65 R NGVLL+DKP + + V+R A++ LD A+G++ +C G AT+ Sbjct: 129 RPEVLANGVLLVDKPPHWEVPEVVAAVQRATGADKVASVAPLDARASGLMLLCFGSATRL 188 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFR 116 + + + KRY LG + + D G + + E L A Sbjct: 189 APRVERAAKRYTGTLVLGGSSLSGDVRGGSFRAAQLPAEHLTDEDLREAAQGLV 242 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%) Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 +R++I G +L A + LRR + + VE LE L Sbjct: 362 VRSLIAMYGRRLRTAACLDDLRRTEIGSFNVEEAWPLEAL 401 >UniRef50_D0GJF7 tRNA pseudouridine synthase B (Fragment) n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GJF7_9FUSO Length = 168 Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 22/167 (13%) Query: 155 VYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV 214 + E+ ++ S GTYIRT++ D+G+K G A + L R + K+ +E V Sbjct: 5 IREIKINSENPKKISFYADVSSGTYIRTLVKDIGDKTGFYATMTKLVRTKIDKFSLEDAV 64 Query: 215 TLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPV---- 270 + + E ++ +D + ++ DY V KNG V Sbjct: 65 DIGKINEYFNISKIKDKINLKEVE--------YIFDYEKVITDYEKYKKLKNGMTVLFKK 116 Query: 271 ----RTSGAPLEGLVRVT----EGENGKFIGMGEIDDEG--RVAPRR 307 ++ ++ +F G+ +I +G + +R Sbjct: 117 NKFKDIEKINENKKYKLYLHNKTSKDKEFKGIVKIIKKGTDMIYIKR 163 >UniRef50_Q3KMS7 TRNA pseudouridine synthase B n=1 Tax=Chlamydia trachomatis A/HAR-13 RepID=Q3KMS7_CHLTA Length = 85 Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 160 FIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV 214 +++E L + CSKGTYIR+I +LG LGCGA++ LRRL + +++ + Sbjct: 1 MVKYEYPRLHFVVQCSKGTYIRSIAHELGNMLGCGAYLEELRRLRSGSFSIDQCI 55 >UniRef50_Q2R1N7 Kinetochore protein, putative n=1 Tax=Oryza sativa Japonica Group RepID=Q2R1N7_ORYSJ Length = 142 Score = 78.0 bits (191), Expect = 5e-13, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 28 ALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTD 87 + +KR+ N+ GH+G LDP TG L +C+ AT+ + + K Y +AR Sbjct: 59 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDLATRLVKSQQGAGKEYGCVARFHAAVP 118 >UniRef50_A4W1P3 Pseudouridine synthase n=2 Tax=Streptococcus RepID=A4W1P3_STRS2 Length = 105 Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 15/120 (12%) Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 +G +H+ L R + + +TLE + LV + + L P++ D Sbjct: 1 MGYASHMSKLERTGSAGMDLADALTLEEISSLVAENDFS----------FLQPIERGIGD 50 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 PVV L G V + R+ +G+ I + E D+ P +++V Sbjct: 51 LPVVELKEEQVQDATFGRFVELNAEAE----RLAGFHDGQLIAIFEKRDQ-LYKPSKVLV 105 >UniRef50_UPI0000D5432F hypothetical protein P700755_23672 n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D5432F Length = 74 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGM 54 R +G +L+DKP G +S+ + + +R GH G LDP ATG+ Sbjct: 26 EQRLASGFILVDKPAGPTSHQLAAWARDLLGLDRLGHGGTLDPFATGV 73 >UniRef50_UPI000180D082 PREDICTED: dyskerin n=1 Tax=Ciona intestinalis RepID=UPI000180D082 Length = 627 Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 19/133 (14%) Query: 197 VIYLRRLAVSKYPVERM-VTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVN 255 + LRR+ VT+ + + Q L ++ P++ + + Sbjct: 329 MQELRRVRSGIMSENDDLVTMHDVLDAQYQ--LDHHKDETHLRRVISPLEKLLVSHKRII 386 Query: 256 LPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEID-------DE 300 L ++ G + G + +V +T + + + D Sbjct: 387 LKDSAVNAICYGAKILLPGVLRYEDGIEVNQEIVIITTKGEAICLAIALMTTAVISTCDH 446 Query: 301 GRV-APRRLVVEY 312 G V +R+++E Sbjct: 447 GIVAKIKRVIMER 459 >UniRef50_A3DND5 DKCLD domain protein n=1 Tax=Staphylothermus marinus F1 RepID=A3DND5_STAMF Length = 94 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDP 49 NGV+ LDKP G +S++ + +K+++ RAGH G L+P Sbjct: 51 NGVINLDKPPGPTSHEVVAWIKKMFELERAGHGGTLEP 88 >UniRef50_D1Y424 Putative uncharacterized protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y424_9BACT Length = 134 Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 39/114 (34%), Gaps = 10/114 (8%) Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R++ DLG LG GAH+ LRRL V Y E + Q L Sbjct: 1 MRSLARDLGRALGAGAHLSGLRRLCVGCYRAEEALPYN----------PQAPAGETELAG 50 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIG 293 + ++S AS Y + NG V S V E +G Sbjct: 51 RIQSVESLASQYYSYDANAFCEKRLSNGLGVYVSFMRFRNPGVVPVDEGVMVVG 104 >UniRef50_Q8SVK5 Putative uncharacterized protein ECU05_0680 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SVK5_ENCCU Length = 318 Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 10/88 (11%) Query: 15 LLLDKPQGMSSN-------DALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 ++++KP G+ + + K ++ + LD +G+L + + +K + Sbjct: 93 IVVNKPPGIPCHPTGGYREYCVTKA--LFGDEKVACINRLDMPVSGVLILAVRNHSKCLE 150 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQI 95 + D+ K Y G D D D +I Sbjct: 151 AIRDAKKIYVAKVY-GMFPDKVDVDKRI 177 >UniRef50_B9SBQ9 Centromere/microtubule binding protein cbf5, putative n=1 Tax=Ricinus communis RepID=B9SBQ9_RICCO Length = 432 Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLAT 52 GV+ LDKP SS++ + +KRI + GH+G L+P T Sbjct: 70 GVMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLNPKVT 109 Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 16/101 (15%) Query: 228 QQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA--------PLEG 279 + L ++MP++ + Y + + ++ G + G E Sbjct: 105 NPKVTDETYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDVEVGEE 164 Query: 280 LVRVTEGENGKFIGMGEID-------DEGRV-APRRLVVEY 312 +V +T +G+ E+ D G V +R+V++ Sbjct: 165 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVAKIKRVVMDR 205 >UniRef50_A2ARC1 TruB pseudouridine (Psi) synthase homolog 2 (E. coli) n=1 Tax=Mus musculus RepID=A2ARC1_MOUSE Length = 204 Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 40 RAGHTGALDPLATGMLPICLGEATKFSQYLLDSD--KRYRVIARLGQRTDTSDADGQIVE 97 + G LD A+G+L + +G + D+ K Y V LG+ TD DG+++E Sbjct: 90 KIGVGHRLDVQASGVLVLAVGHGRSLLTDMYDAHLTKDYTVRGLLGKATDNFCEDGRLIE 149 Query: 98 ERPV-TFSAEQLAAALDTFRGDIEQ 121 + + E+L L +G ++ Sbjct: 150 KTTYDHVTRERLDRILAVIQGSHQK 174 >UniRef50_Q2GY16 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2GY16_CHAGB Length = 250 Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 36/88 (40%) Query: 11 INGVLLLDKPQGMSSNDALQ-----------------------------------KVKRI 35 + GV ++KP GMSS ++ K KR Sbjct: 7 VEGVFAINKPVGMSSAQIIRDCQHQFNPSALFAPLLKQEQALRDKESRYQKHRRGKAKRA 66 Query: 36 YNANRAGHTGALDPLATGMLPICLGEAT 63 + GH G LDPLATG+L + +G+ T Sbjct: 67 LQV-KMGHGGTLDPLATGVLILGVGKGT 93 Score = 40.6 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 15/92 (16%) Query: 188 GEKLGCGAHVIYLRRLAVSKYPV--ERMVTLEHLRELVEQA-------------EQQDIP 232 GE LGCGA + L R ++ + E + + L + + + Sbjct: 121 GEMLGCGAMMAELSRTRQGQFAIGGENCLQYDELFQGEDVWGPKVDRMLDLWNNPNTEQA 180 Query: 233 AAELLDPLLMPMDSPASDYPVVNLPLTSSVYF 264 ++ D + P ++ + P + Sbjct: 181 KPKVGDAVSSPAEANETSKPAAKGNDSQEDKL 212 >UniRef50_A0B7V3 THUMP domain protein n=5 Tax=Methanosarcinales RepID=A0B7V3_METTP Length = 452 Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 40/143 (27%) Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 +K Y + V E+L +AL G +EQ + Sbjct: 332 EKTYEALIEF-----------------SVPVEEEKLKSALSRLIGFVEQRTPT----RVS 370 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID------- 185 ++ + R V+ G + + C G Y++ +I Sbjct: 371 HRRA-----------DKVRRRAVHSAELEEFSGRTARITVRCDSGLYVKELISGDAGRTR 419 Query: 186 -DLGEKLGCGAHVIYLRRLAVSK 207 L E L A V+ L + V Sbjct: 420 PSLAELLESDARVVELDVIDVGG 442 >UniRef50_B7XJU4 Diaminohydroxyphosphoribosylaminopyrimidine deaminase n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XJU4_ENTBH Length = 331 Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 14 VLLLDKPQGMSSNDALQK-----VKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + +++KP G+ + K I+ G LD +G+L I + +Y Sbjct: 87 ITVVNKPFGIPCHPVGAYHYYTVTKTIFKNKPVGCVNRLDIPVSGVLIINTCNQKRIHEY 146 Query: 69 LLDSDKRYRVIA 80 LL+S K Y Sbjct: 147 LLNSKKIYIAKV 158 >UniRef50_B9CXH0 tRNA pseudouridine synthase B (Fragment) n=1 Tax=Actinobacillus minor 202 RepID=B9CXH0_9PAST Length = 67 Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%) Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPL-EGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 S+ P +NL + G V+ GLVR+ +F+G+ EI + + P Sbjct: 4 VSNLPKINLNEQQTKAVGFGQRVKFENVEQMYGLVRLFSN-TAQFLGVAEITADDVIRPN 62 Query: 307 RLV 309 R+V Sbjct: 63 RMV 65 >UniRef50_D2LNT6 Pseudouridylate synthase 10-like protein n=3 Tax=Aciduliprofundum boonei T469 RepID=D2LNT6_9EURY Length = 360 Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 23/113 (20%) Query: 101 VTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF 160 V SAE+L +ALD+ G I Q + + ++ + R VYE+ Sbjct: 260 VDASAEELKSALDSLIGKISQRTPT----RVKHRRA-----------DKVRIKEVYEVKL 304 Query: 161 IRHEGNELELEIHCSKGTYIRTIID--------DLGEKLGCGAHVIYLRRLAV 205 I + +E+ GTYI+ ++ L EKLG V++L + + Sbjct: 305 IGKDNEAWVVEVLAQSGTYIKELMHGDNGRTSPSLAEKLGKKLEVLWLDVIEI 357 >UniRef50_C4QHQ2 Expressed protein n=1 Tax=Schistosoma mansoni RepID=C4QHQ2_SCHMA Length = 316 Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 7/91 (7%) Query: 135 KLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT--YIRTIIDDLGEKLG 192 + YE+ E R V + + + +EI T + ++ +LG KL Sbjct: 211 RKYEW-----EEERRQMAPYVNAMRCVDFDPPFFTIEIQVIHETLKFFIDLVGNLGPKLR 265 Query: 193 CGAHVIYLRRLAVSKYPVERMVTLEHLRELV 223 + RR+ E + ++HL + Sbjct: 266 TATLLSKARRVRHGPITAENSLLMKHLHNIP 296 >UniRef50_Q3IRF7 Putative uncharacterized protein n=1 Tax=Natronomonas pharaonis DSM 2160 RepID=Q3IRF7_NATPD Length = 412 Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 34/160 (21%), Positives = 46/160 (28%), Gaps = 44/160 (27%) Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRG-DIEQIPSMYSA 128 D DK YR G D AAL G IEQ Sbjct: 276 HDGDKTYRATVEFGAAVD-----------------ESDFEAALAELDGTTIEQRTPH--- 315 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID--- 185 + ++ R TV ++ + +E+H G YI+ ++ Sbjct: 316 -RVDHRRA-----------DLVRERTVLDIDGELEADHAATVEVHGEGGLYIKELMSGDE 363 Query: 186 -----DLGEKLGCGAHVIYLRRLAVSKYP---VERMVTLE 217 L LG GA V L LAV + LE Sbjct: 364 GRTEPSLAGLLGVGATVTALDVLAVEGVDEPFLTDDYRLE 403 >UniRef50_UPI00019042A3 tRNA pseudouridine synthase B n=1 Tax=Rhizobium etli Brasil 5 RepID=UPI00019042A3 Length = 65 Score = 43.3 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%) Query: 257 PLTSSVYFKNGNPVRTSGAPLE-GLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 + K GNP+ G G+ I +GEI +G P+R+ Sbjct: 12 NDDQAHRLKMGNPILVRGRDAPIAESEAYATARGRLIAIGEI-GQGEFRPKRVFA 65 >UniRef50_Q8TUV7 Predicted pseudouridylate synthase n=1 Tax=Methanopyrus kandleri RepID=Q8TUV7_METKA Length = 436 Score = 42.5 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 38/144 (26%) Query: 59 LGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RG 117 +G+ S+ S KRYR + G+ ++L L R Sbjct: 308 VGKVKDLSER---SRKRYRAWVKFGK-----------------PVPEDKLREVLKGLERS 347 Query: 118 DIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKG 177 IEQ + ++ + R V+E I ++G+ +E C G Sbjct: 348 VIEQRTPR----RVLHRRA-----------DKVRRKRVHEAKLIEYDGDRAVIEFLCDPG 392 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLR 201 Y++ +I G+ + L Sbjct: 393 LYVKELIS--GDAGRTRPSLAELV 414 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 41.4 bits (96), Expect = 0.043, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 22/153 (14%) Query: 15 LLLDKPQGMSSN--DALQK--VKRIYNANRAG-----HTGALDPLATGMLPICLGE---A 62 +L+KP+GM S D L + V + + A H G LD G L + + A Sbjct: 143 FVLNKPRGMHSTMSDELGRPCVGDLVSEKTASGQRLFHVGRLDADTEG-LLLLTNDGELA 201 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTD---TSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 + + K Y R G+ T+ ++ DG +E+ P A +D F+G Sbjct: 202 NRLMHPKYEVSKTYLATVR-GEATNKLVSALRDGVELEDGPA---KADFAQIIDVFQGKS 257 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARP 152 ++ K+ ++L++ G V R R Sbjct: 258 LLRIEIHEGRKHIVRRLFD--ELGFPVERLVRT 288 >UniRef50_Q1MPA9 Parvulin-like peptidyl-prolyl isomerase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MPA9_LAWIP Length = 629 Score = 41.4 bits (96), Expect = 0.046, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 62/206 (30%), Gaps = 29/206 (14%) Query: 77 RVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKL 136 V G T + + ++V + + ++L + +I Q SA + ++ Sbjct: 23 IVFIFWGIGTLSGGPEVEVVSVNGQSITIQELQKRCEEIEQNIRQNFPTISAAEINTFRI 82 Query: 137 YEYA---------------RQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 + A R G+ + T+ + + + I Y++ Sbjct: 83 KQLATQQLILETLVLQEANRIGLIITPIELRKTIESFPAFHNTEGKFDPAI------YLQ 136 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTL-EHLRELVEQAEQQDIPAAELLDPL 240 + E+ H R + +++ +T ++ A + L Sbjct: 137 FLK----ERNDTPGHFESQIRTNLLINKIQQEITAGAYISPTEAYDVYMYESATRTIQYL 192 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKN 266 L P + + VN+ F N Sbjct: 193 LFPTEDYLN---KVNISADEVAKFYN 215 >UniRef50_B1C9B9 Pseudouridine synthase n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9B9_9FIRM Length = 307 Score = 40.2 bits (93), Expect = 0.099, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 20/120 (16%) Query: 14 VLLLDKPQGMSSN-------DALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++L+DKP G+ S D + + N+ G LD +G + G+ + Sbjct: 90 IILIDKPSGILSQADGSSKEDIVSNLISYLNSKSTGIVTRLDLNTSG--IVLAGKNRRAL 147 Query: 67 QYLLDS------DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 L + DKRY + R D +G++ +L G E Sbjct: 148 MLLNEMSKNKLIDKRYLTLVR-----GDFDREGKVTHYGIKDNKENKLILGNKKVDGSFE 202 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A1JIX1 tRNA pseudouridine synthase B n=327 Tax=Gammapro... 369 e-101 UniRef50_C5AH02 TRNA pseudouridine synthase B n=3 Tax=Burkholder... 338 1e-91 UniRef50_Q21H63 tRNA pseudouridine synthase B n=5 Tax=Gammaprote... 337 3e-91 UniRef50_Q1LSL0 tRNA pseudouridine synthase B n=1 Tax=Baumannia ... 335 1e-90 UniRef50_Q1GXD4 tRNA pseudouridine synthase B n=4 Tax=Betaproteo... 334 2e-90 UniRef50_C7GDK4 tRNA pseudouridine 55 synthase n=6 Tax=Clostridi... 332 1e-89 UniRef50_B3PI98 tRNA pseudouridine synthase B n=5 Tax=Gammaprote... 330 4e-89 UniRef50_A1KUJ6 tRNA pseudouridine synthase B n=5 Tax=Neisseriac... 329 7e-89 UniRef50_A8PNK9 tRNA pseudouridine synthase B n=1 Tax=Rickettsie... 329 1e-88 UniRef50_C0GIW2 tRNA pseudouridine synthase B n=1 Tax=Dethiobact... 328 2e-88 UniRef50_D0L0S4 tRNA pseudouridine synthase B n=1 Tax=Halothioba... 328 2e-88 UniRef50_C1D8X0 TruB n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 327 3e-88 UniRef50_A1WXU9 tRNA pseudouridine synthase B n=4 Tax=Gammaprote... 327 4e-88 UniRef50_Q2SML1 tRNA pseudouridine synthase B n=3 Tax=Gammaprote... 326 5e-88 UniRef50_Q1QSZ2 tRNA pseudouridine synthase B n=3 Tax=Proteobact... 325 1e-87 UniRef50_C4ZJR7 tRNA pseudouridine synthase B n=4 Tax=Betaproteo... 324 2e-87 UniRef50_C4ZBF1 tRNA pseudouridine synthase B n=9 Tax=Firmicutes... 322 1e-86 UniRef50_A8FDD4 tRNA pseudouridine synthase B n=29 Tax=Bacilli R... 322 1e-86 UniRef50_B1XV87 tRNA pseudouridine synthase B n=2 Tax=Polynucleo... 321 2e-86 UniRef50_Q3ZXU5 tRNA pseudouridine synthase B n=5 Tax=Dehalococc... 321 3e-86 UniRef50_C4Z5P0 tRNA pseudouridine synthase B n=2 Tax=Bacteria R... 320 4e-86 UniRef50_UPI000178873D tRNA pseudouridine synthase B n=1 Tax=Geo... 320 4e-86 UniRef50_Q812X9 tRNA pseudouridine synthase B n=128 Tax=Bacilli ... 320 5e-86 UniRef50_Q3SWP7 tRNA pseudouridine synthase B n=100 Tax=Alphapro... 319 7e-86 UniRef50_B4RMB1 tRNA pseudouridine synthase B n=20 Tax=Betaprote... 319 7e-86 UniRef50_C6D2E9 tRNA pseudouridine synthase B n=2 Tax=Paenibacil... 319 9e-86 UniRef50_A4G7S5 tRNA pseudouridine synthase B (TRNA pseudouridin... 319 9e-86 UniRef50_A9KNW1 tRNA pseudouridine synthase B n=6 Tax=Clostridia... 318 1e-85 UniRef50_B8I6F0 tRNA pseudouridine synthase B n=5 Tax=Clostridiu... 318 2e-85 UniRef50_Q5WFU5 tRNA pseudouridine synthase B n=2 Tax=Bacillacea... 318 2e-85 UniRef50_D1PLN1 tRNA pseudouridine synthase B n=1 Tax=Subdoligra... 317 3e-85 UniRef50_B9ZLN1 tRNA pseudouridine synthase B n=1 Tax=Thioalkali... 316 6e-85 UniRef50_C8P7Y2 tRNA pseudouridine synthase B n=1 Tax=Lactobacil... 316 8e-85 UniRef50_Q8RA40 tRNA pseudouridine synthase B n=10 Tax=Thermoana... 316 8e-85 UniRef50_A5UZQ6 tRNA pseudouridine synthase B n=5 Tax=Chloroflex... 316 9e-85 UniRef50_Q2BH44 TRNA pseudouridine synthase B n=1 Tax=Neptuniiba... 314 2e-84 UniRef50_C3RL16 tRNA pseudouridine synthase B n=4 Tax=Bacteria R... 314 2e-84 UniRef50_Q6F7I5 tRNA pseudouridine synthase B n=20 Tax=Proteobac... 314 2e-84 UniRef50_B8FR03 tRNA pseudouridine synthase B n=2 Tax=Desulfitob... 314 3e-84 UniRef50_A1HSB7 TRNA pseudouridine synthase B n=1 Tax=Thermosinu... 314 3e-84 UniRef50_A8RZ93 Putative uncharacterized protein n=8 Tax=Clostri... 314 4e-84 UniRef50_Q31GK3 tRNA pseudouridine synthase B n=1 Tax=Thiomicros... 313 4e-84 UniRef50_A3WPV5 TRNA pseudouridine 5S synthase n=1 Tax=Idiomarin... 312 9e-84 UniRef50_C0ZF47 tRNA pseudouridine synthase B n=1 Tax=Brevibacil... 312 1e-83 UniRef50_Q8K9H3 tRNA pseudouridine synthase B n=4 Tax=Buchnera a... 312 1e-83 UniRef50_UPI0000E0F5A1 tRNA pseudouridine synthase B n=1 Tax=Gla... 312 1e-83 UniRef50_C7I1W4 tRNA pseudouridine synthase B n=1 Tax=Thiomonas ... 312 1e-83 UniRef50_Q0SSD7 tRNA pseudouridine synthase B n=33 Tax=Clostridi... 311 2e-83 UniRef50_A8MFB1 tRNA pseudouridine synthase B n=1 Tax=Alkaliphil... 311 3e-83 UniRef50_A8LL26 tRNA pseudouridine synthase B n=42 Tax=Rhodobact... 310 5e-83 UniRef50_Q0AYI5 tRNA pseudouridine synthase B n=1 Tax=Syntrophom... 308 1e-82 UniRef50_D1CFW9 tRNA pseudouridine synthase B n=1 Tax=Thermobacu... 308 1e-82 UniRef50_D2MK32 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 308 2e-82 UniRef50_C6IW07 tRNA pseudouridine synthase B n=1 Tax=Paenibacil... 308 2e-82 UniRef50_Q2Y7W4 tRNA pseudouridine synthase B n=3 Tax=Nitrosomon... 307 2e-82 UniRef50_UPI00016C0EBC tRNA pseudouridine synthase B n=1 Tax=Epu... 307 2e-82 UniRef50_Q4L5X4 tRNA pseudouridine synthase B n=68 Tax=Bacilli R... 307 4e-82 UniRef50_C0WBC5 tRNA pseudouridine synthase B n=1 Tax=Acidaminoc... 306 6e-82 UniRef50_C2C2D8 tRNA pseudouridine synthase B n=3 Tax=Listeria R... 306 8e-82 UniRef50_B0PH12 Putative uncharacterized protein n=3 Tax=Clostri... 305 1e-81 UniRef50_Q18BH7 tRNA pseudouridine synthase B n=8 Tax=Clostridia... 304 3e-81 UniRef50_Q1MZS4 TRNA pseudouridine synthase B n=1 Tax=Bermanella... 304 3e-81 UniRef50_A9IMS8 tRNA pseudouridine synthase B n=3 Tax=Bartonella... 304 3e-81 UniRef50_Q3A4A3 tRNA pseudouridine synthase B n=2 Tax=Desulfurom... 304 4e-81 UniRef50_UPI0000E87C37 tRNA pseudouridine synthase B n=1 Tax=Met... 303 4e-81 UniRef50_C4GBF3 Putative uncharacterized protein n=1 Tax=Shuttle... 303 6e-81 UniRef50_A5CXX8 tRNA pseudouridine synthase B n=3 Tax=Bacteria R... 303 6e-81 UniRef50_B0NZN2 Putative uncharacterized protein n=1 Tax=Clostri... 302 1e-80 UniRef50_A7NAR1 tRNA pseudouridine synthase B n=19 Tax=Francisel... 302 1e-80 UniRef50_C6MD69 tRNA pseudouridine synthase B n=1 Tax=Nitrosomon... 301 2e-80 UniRef50_A1AMM4 tRNA pseudouridine synthase B n=2 Tax=Desulfurom... 301 2e-80 UniRef50_Q98BI6 tRNA pseudouridine synthase B n=2 Tax=Mesorhizob... 301 2e-80 UniRef50_B9YSP0 tRNA pseudouridine synthase B n=3 Tax=Nostocacea... 301 3e-80 UniRef50_A5VJE2 tRNA pseudouridine synthase B n=18 Tax=Lactobaci... 300 4e-80 UniRef50_A7VT62 Putative uncharacterized protein n=2 Tax=Bacteri... 300 4e-80 UniRef50_Q2RJM2 tRNA pseudouridine synthase B n=1 Tax=Moorella t... 299 8e-80 UniRef50_Q057K1 TRNA pseudouridine 55 synthetase n=1 Tax=Buchner... 299 1e-79 UniRef50_A8VS66 Pseudouridine synthase-like protein n=2 Tax=Baci... 298 1e-79 UniRef50_C7H6A8 tRNA pseudouridine synthase B n=2 Tax=Faecalibac... 298 2e-79 UniRef50_Q89AF6 tRNA pseudouridine synthase B n=1 Tax=Buchnera a... 298 2e-79 UniRef50_Q01SZ5 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 298 2e-79 UniRef50_B1YI60 tRNA pseudouridine synthase B n=2 Tax=Exiguobact... 297 2e-79 UniRef50_B3WER2 tRNA pseudouridine synthase B n=9 Tax=Lactobacil... 297 3e-79 UniRef50_B5YJI4 tRNA pseudouridine synthase B n=1 Tax=Thermodesu... 297 4e-79 UniRef50_A3VQI2 TRNA pseudouridine synthase B n=2 Tax=Alphaprote... 296 5e-79 UniRef50_Q5X1C5 tRNA pseudouridine synthase B n=4 Tax=Legionella... 296 5e-79 UniRef50_Q1G9Q1 tRNA pseudouridine synthase B n=27 Tax=Lactobaci... 296 6e-79 UniRef50_Q2RMR8 tRNA pseudouridine synthase B n=11 Tax=Alphaprot... 296 1e-78 UniRef50_A8ZZ61 tRNA pseudouridine synthase B n=1 Tax=Desulfococ... 295 2e-78 UniRef50_A5GF89 tRNA pseudouridine synthase B n=7 Tax=Geobacter ... 294 2e-78 UniRef50_B0THR7 tRNA pseudouridine synthase B n=2 Tax=Heliobacte... 294 2e-78 UniRef50_C0QUQ5 tRNA pseudouridine synthase B n=5 Tax=Aquificale... 294 2e-78 UniRef50_A5EWY7 TRNA pseudouridine synthase B n=1 Tax=Dichelobac... 294 3e-78 UniRef50_B8FCY8 tRNA pseudouridine synthase B n=1 Tax=Desulfatib... 294 3e-78 UniRef50_A5IIS7 tRNA pseudouridine synthase B n=9 Tax=Thermotoga... 294 4e-78 UniRef50_Q3BRP7 tRNA pseudouridine synthase B n=20 Tax=Xanthomon... 293 4e-78 UniRef50_A4A2R8 TRNA pseudouridine synthase B (Fragment) n=1 Tax... 293 5e-78 UniRef50_C6P7U8 tRNA pseudouridine synthase B n=1 Tax=Thermoanae... 293 6e-78 UniRef50_C9KKC7 tRNA pseudouridine synthase B n=3 Tax=Veillonell... 293 6e-78 UniRef50_A2RE90 tRNA pseudouridine synthase B n=24 Tax=Streptoco... 292 8e-78 UniRef50_D1VSB0 tRNA pseudouridine synthase B n=1 Tax=Peptoniphi... 292 8e-78 UniRef50_D0LZ86 tRNA pseudouridine synthase B n=1 Tax=Haliangium... 292 9e-78 UniRef50_UPI00016C5566 TruB n=1 Tax=Gemmata obscuriglobus UQM 22... 292 1e-77 UniRef50_C7RGP3 tRNA pseudouridine synthase B n=4 Tax=Anaerococc... 292 1e-77 UniRef50_C9R8X3 tRNA pseudouridine synthase B n=1 Tax=Ammonifex ... 292 1e-77 UniRef50_D2RKW1 tRNA pseudouridine synthase B n=1 Tax=Acidaminoc... 291 2e-77 UniRef50_A0LE16 tRNA pseudouridine synthase B n=1 Tax=Magnetococ... 291 2e-77 UniRef50_A5D2S3 tRNA pseudouridine synthase B n=3 Tax=Peptococca... 291 2e-77 UniRef50_Q38W87 tRNA pseudouridine synthase B n=3 Tax=Lactobacil... 290 3e-77 UniRef50_C8NA97 tRNA pseudouridine synthase B n=1 Tax=Cardiobact... 290 3e-77 UniRef50_Q67P83 tRNA pseudouridine synthase B n=3 Tax=Bacteria R... 290 3e-77 UniRef50_A6C3H8 tRNA pseudouridine synthase B n=1 Tax=Planctomyc... 290 4e-77 UniRef50_B2A3A0 tRNA pseudouridine synthase B n=1 Tax=Natranaero... 289 7e-77 UniRef50_B8CW75 tRNA pseudouridine 55 synthase n=1 Tax=Halotherm... 289 9e-77 UniRef50_A4J5W9 tRNA pseudouridine synthase B n=1 Tax=Desulfotom... 289 1e-76 UniRef50_C5RBC4 Pseudouridylate synthase n=2 Tax=Lactobacillales... 288 1e-76 UniRef50_Q1IPJ6 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 288 2e-76 UniRef50_O66922 tRNA pseudouridine synthase B n=2 Tax=Aquificace... 287 3e-76 UniRef50_A6GNL1 tRNA pseudouridine synthase B n=2 Tax=Burkholder... 287 3e-76 UniRef50_Q5FQM1 tRNA pseudouridine synthase B n=9 Tax=Acetobacte... 287 3e-76 UniRef50_Q1WUF2 tRNA pseudouridine synthase B n=28 Tax=Firmicute... 287 4e-76 UniRef50_UPI000185BE2E tRNA pseudouridine synthase B n=1 Tax=Cor... 287 4e-76 UniRef50_UPI0001C373A4 tRNA pseudouridine synthase B n=1 Tax=Rum... 287 4e-76 UniRef50_C6LME9 tRNA pseudouridine synthase B n=1 Tax=Bryantella... 287 4e-76 UniRef50_C4V3N1 tRNA pseudouridine 55 synthase n=1 Tax=Selenomon... 287 5e-76 UniRef50_Q02Z55 tRNA pseudouridine synthase B n=21 Tax=Streptoco... 286 6e-76 UniRef50_D2R7P9 tRNA pseudouridine synthase B n=1 Tax=Pirellula ... 286 8e-76 UniRef50_C1F2Z6 tRNA pseudouridine synthase B n=1 Tax=Acidobacte... 285 1e-75 UniRef50_B8DW45 tRNA pseudouridine synthase B n=5 Tax=Bifidobact... 285 1e-75 UniRef50_C4FYS6 Putative uncharacterized protein n=1 Tax=Abiotro... 285 1e-75 UniRef50_A7H9F6 tRNA pseudouridine synthase B n=4 Tax=Anaeromyxo... 284 2e-75 UniRef50_Q2KXZ0 tRNA pseudouridine synthase B n=2 Tax=Proteobact... 284 3e-75 UniRef50_C2KV13 tRNA pseudouridine 55 synthase n=6 Tax=Bacteria ... 283 5e-75 UniRef50_Q2LWU1 tRNA pseudouridine synthase B n=1 Tax=Syntrophus... 283 5e-75 UniRef50_P59881 tRNA pseudouridine synthase B n=15 Tax=Cyanobact... 282 8e-75 UniRef50_B7KGX7 tRNA pseudouridine synthase B n=19 Tax=Cyanobact... 282 9e-75 UniRef50_C6HXK4 tRNA pseudouridine synthase B n=1 Tax=Leptospiri... 282 9e-75 UniRef50_B4WM04 tRNA pseudouridine synthase B, putative n=1 Tax=... 282 1e-74 UniRef50_Q0C5Z2 tRNA pseudouridine synthase B n=1 Tax=Hyphomonas... 281 2e-74 UniRef50_C8WWJ2 tRNA pseudouridine synthase B n=2 Tax=Alicycloba... 281 3e-74 UniRef50_Q4FVL3 tRNA pseudouridine synthase B n=10 Tax=Bacteria ... 280 3e-74 UniRef50_A9AV52 tRNA pseudouridine synthase B n=1 Tax=Herpetosip... 280 3e-74 UniRef50_B9KZ57 tRNA pseudouridine synthase B n=2 Tax=Thermomicr... 280 4e-74 UniRef50_B3CTX3 tRNA pseudouridine 55 synthase n=2 Tax=Orientia ... 280 4e-74 UniRef50_B3CM19 tRNA pseudouridine synthase B n=5 Tax=Wolbachia ... 280 4e-74 UniRef50_Q9Z5I4 tRNA pseudouridine synthase B n=3 Tax=Mycobacter... 279 7e-74 UniRef50_B9Y7W5 Putative uncharacterized protein n=1 Tax=Holdema... 277 4e-73 UniRef50_A6LLV6 tRNA pseudouridine synthase B n=1 Tax=Thermosiph... 277 4e-73 UniRef50_D2Q8K5 TruB tRNA pseudouridine synthase B n=6 Tax=Bifid... 277 4e-73 UniRef50_Q5PAY2 tRNA pseudouridine synthase B n=10 Tax=Anaplasma... 277 5e-73 UniRef50_Q8D2X8 tRNA pseudouridine synthase B n=1 Tax=Wiggleswor... 277 5e-73 UniRef50_Q8R5X8 tRNA pseudouridine synthase B n=16 Tax=Fusobacte... 276 7e-73 UniRef50_B5YEH8 tRNA pseudouridine synthase B n=2 Tax=Dictyoglom... 275 1e-72 UniRef50_B1CB51 Putative uncharacterized protein n=1 Tax=Anaerof... 275 1e-72 UniRef50_Q3ABA1 tRNA pseudouridine synthase B n=1 Tax=Carboxydot... 275 1e-72 UniRef50_A0LHM2 tRNA pseudouridine synthase B n=1 Tax=Syntrophob... 275 1e-72 UniRef50_D1AS76 tRNA pseudouridine synthase B n=1 Tax=Anaplasma ... 275 1e-72 UniRef50_A8SMZ3 Putative uncharacterized protein n=1 Tax=Parvimo... 275 2e-72 UniRef50_C0W0C7 Possible tRNA-pseudouridine synthase I n=1 Tax=A... 274 2e-72 UniRef50_C7NH20 tRNA pseudouridine 55 synthase n=1 Tax=Kytococcu... 274 2e-72 UniRef50_C9LRE6 tRNA pseudouridine synthase B n=1 Tax=Dialister ... 274 3e-72 UniRef50_Q7MBB8 tRNA pseudouridine synthase B n=3 Tax=Cyanobacte... 274 3e-72 UniRef50_Q04ED7 tRNA pseudouridine synthase B n=1 Tax=Oenococcus... 273 5e-72 UniRef50_A1WLI1 tRNA pseudouridine synthase B n=103 Tax=cellular... 273 7e-72 UniRef50_Q493T5 tRNA pseudouridine synthase B n=2 Tax=Candidatus... 273 7e-72 UniRef50_A7BD72 Putative uncharacterized protein n=1 Tax=Actinom... 273 7e-72 UniRef50_Q30WI7 tRNA pseudouridine synthase B n=4 Tax=Desulfovib... 273 7e-72 UniRef50_B1ZX46 tRNA pseudouridine synthase B n=3 Tax=Verrucomic... 272 8e-72 UniRef50_D1BM63 tRNA pseudouridine synthase B n=3 Tax=Veillonell... 272 8e-72 UniRef50_C7R3E1 tRNA pseudouridine synthase B n=1 Tax=Jonesia de... 272 1e-71 UniRef50_Q46JB9 tRNA pseudouridine synthase B n=2 Tax=Prochloroc... 272 1e-71 UniRef50_B1MZH0 tRNA pseudouridine synthase B n=3 Tax=Leuconosto... 272 1e-71 UniRef50_C0QHM4 TruB n=1 Tax=Desulfobacterium autotrophicum HRM2... 272 1e-71 UniRef50_Q0EZ77 TRNA pseudouridine synthase B n=1 Tax=Mariprofun... 272 2e-71 UniRef50_Q4JV56 tRNA pseudouridine synthase B n=5 Tax=Corynebact... 271 2e-71 UniRef50_Q2G5F3 tRNA pseudouridine synthase B n=8 Tax=Sphingomon... 271 2e-71 UniRef50_D2R9Q7 tRNA pseudouridine synthase B n=1 Tax=Gardnerell... 271 3e-71 UniRef50_A9BI94 tRNA pseudouridine synthase B n=1 Tax=Petrotoga ... 270 4e-71 UniRef50_Q2J732 tRNA pseudouridine synthase B n=1 Tax=Frankia sp... 269 7e-71 UniRef50_Q8CWM3 tRNA pseudouridine synthase B n=6 Tax=Cyanobacte... 269 1e-70 UniRef50_D1N2Y9 tRNA pseudouridine synthase B n=2 Tax=Lentisphae... 268 2e-70 UniRef50_C7MBA9 tRNA pseudouridine synthase B n=1 Tax=Brachybact... 267 2e-70 UniRef50_C1ZEI4 tRNA pseudouridine 55 synthase n=1 Tax=Planctomy... 267 3e-70 UniRef50_P59880 tRNA pseudouridine synthase B n=2 Tax=Prochloroc... 267 4e-70 UniRef50_B0S1E2 tRNA pseudouridine 5S synthase n=2 Tax=Finegoldi... 267 4e-70 UniRef50_B6BVJ8 tRNA pseudouridine synthase B n=1 Tax=beta prote... 267 5e-70 UniRef50_C7LXY6 tRNA pseudouridine synthase B n=1 Tax=Acidimicro... 266 9e-70 UniRef50_Q6MMS4 tRNA pseudouridine synthase B n=1 Tax=Bdellovibr... 265 1e-69 UniRef50_C4LJ77 tRNA pseudouridine synthase B n=1 Tax=Corynebact... 265 1e-69 UniRef50_A8RBN0 Putative uncharacterized protein n=2 Tax=unclass... 265 1e-69 UniRef50_D0MI93 tRNA pseudouridine synthase B n=1 Tax=Rhodotherm... 265 2e-69 UniRef50_C0GUB0 tRNA pseudouridine synthase B n=1 Tax=Desulfonat... 265 2e-69 UniRef50_D1IN94 Whole genome shotgun sequence of line PN40024, s... 264 3e-69 UniRef50_B7ICP6 tRNA pseudouridine synthase B n=1 Tax=Thermosiph... 264 3e-69 UniRef50_C2BRN4 Possible tRNA-pseudouridine synthase I n=1 Tax=M... 264 4e-69 UniRef50_B3DZL5 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 263 7e-69 UniRef50_B6AR13 tRNA pseudouridine synthase B n=2 Tax=Leptospiri... 263 7e-69 UniRef50_Q0WVR7 tRNA synthase-like protein n=10 Tax=Magnoliophyt... 263 8e-69 UniRef50_C2CXC9 Possible tRNA-pseudouridine synthase I n=1 Tax=G... 262 1e-68 UniRef50_A1R520 tRNA pseudouridine synthase B n=14 Tax=Actinomyc... 262 1e-68 UniRef50_Q72ER4 tRNA pseudouridine synthase B n=10 Tax=Desulfovi... 262 1e-68 UniRef50_Q6MD66 tRNA pseudouridine synthase B n=15 Tax=Chlamydia... 262 2e-68 UniRef50_C1SPK2 tRNA pseudouridine 55 synthase n=1 Tax=Denitrovi... 260 3e-68 UniRef50_A0QIX1 tRNA pseudouridine synthase B n=93 Tax=Actinomyc... 260 4e-68 UniRef50_B9XFC5 tRNA pseudouridine synthase B n=1 Tax=bacterium ... 260 5e-68 UniRef50_UPI000050FC6C tRNA pseudouridine synthase B n=1 Tax=Bre... 260 5e-68 UniRef50_B0BXR2 tRNA pseudouridine synthase B n=16 Tax=Rickettsi... 260 6e-68 UniRef50_D0WDY9 tRNA pseudouridine synthase B n=1 Tax=Slackia ex... 260 6e-68 UniRef50_B6GCN3 Putative uncharacterized protein n=2 Tax=Collins... 259 7e-68 UniRef50_Q1AW51 tRNA pseudouridine synthase B n=1 Tax=Rubrobacte... 259 9e-68 UniRef50_Q2NIZ2 tRNA pseudouridine synthase B n=7 Tax=Acholeplas... 258 2e-67 UniRef50_C5NXZ4 tRNA pseudouridine synthase B n=1 Tax=Gemella ha... 257 3e-67 UniRef50_B3DQF2 tRNA pseudouridine synthase B n=6 Tax=Bifidobact... 257 4e-67 UniRef50_C7MNL5 tRNA pseudouridine 55 synthase n=1 Tax=Cryptobac... 257 4e-67 UniRef50_B9FM24 Putative uncharacterized protein n=1 Tax=Oryza s... 257 5e-67 UniRef50_D1AL32 tRNA pseudouridine synthase B n=1 Tax=Sebaldella... 255 1e-66 UniRef50_A4XL67 tRNA pseudouridine synthase B n=1 Tax=Caldicellu... 255 2e-66 UniRef50_C8WI31 tRNA pseudouridine synthase B n=2 Tax=Coriobacte... 254 2e-66 UniRef50_B2UQ50 tRNA pseudouridine synthase B n=3 Tax=Verrucomic... 254 4e-66 UniRef50_C7N8V4 tRNA pseudouridine synthase B n=1 Tax=Leptotrich... 253 5e-66 UniRef50_C1E906 Predicted protein n=5 Tax=Eukaryota RepID=C1E906... 253 6e-66 UniRef50_C3JA73 tRNA pseudouridine synthase B n=6 Tax=Bacteria R... 253 7e-66 UniRef50_D0RQI7 tRNA pseudouridine synthase B n=1 Tax=alpha prot... 251 2e-65 UniRef50_C8NZL8 tRNA pseudouridine synthase B (TRNA pseudouridin... 251 2e-65 UniRef50_Q2NBZ4 TRNA pseudouridine synthase B n=1 Tax=Erythrobac... 251 2e-65 UniRef50_C2KR47 Possible tRNA-pseudouridine synthase I n=2 Tax=M... 251 3e-65 UniRef50_Q6AJY7 tRNA pseudouridine synthase B n=1 Tax=Desulfotal... 251 3e-65 UniRef50_Q1NKV8 TRNA pseudouridine synthase B n=3 Tax=Deltaprote... 250 4e-65 UniRef50_C2D7B6 Possible tRNA pseudouridine 55 synthase n=1 Tax=... 250 6e-65 UniRef50_C8W716 tRNA pseudouridine synthase B n=2 Tax=Atopobium ... 248 2e-64 UniRef50_Q14NU4 Putative trna pseudouridine synthase b protein n... 248 2e-64 UniRef50_C9RKT6 tRNA pseudouridine synthase B n=1 Tax=Fibrobacte... 248 2e-64 UniRef50_C9MUE6 tRNA pseudouridine synthase B n=1 Tax=Leptotrich... 247 3e-64 UniRef50_C8PR21 tRNA pseudouridine synthase B n=1 Tax=Treponema ... 247 5e-64 UniRef50_D2NNU2 Pseudouridine synthase n=2 Tax=Rothia mucilagino... 247 5e-64 UniRef50_B1GZN9 tRNA pseudouridine synthase B n=1 Tax=uncultured... 246 9e-64 UniRef50_Q319E0 tRNA pseudouridine synthase B n=8 Tax=Prochloroc... 245 1e-63 UniRef50_C7M8Y8 tRNA pseudouridine synthase B n=1 Tax=Capnocytop... 245 2e-63 UniRef50_D0WR19 tRNA pseudouridine synthase B n=1 Tax=Actinomyce... 245 2e-63 UniRef50_A6GK85 TruB (Fragment) n=1 Tax=Plesiocystis pacifica SI... 244 2e-63 UniRef50_A4S143 Predicted protein n=3 Tax=Mamiellales RepID=A4S1... 244 2e-63 UniRef50_B9MR51 tRNA pseudouridine synthase B n=1 Tax=Anaerocell... 244 3e-63 UniRef50_Q2SSF2 tRNA pseudouridine synthase B n=4 Tax=Mollicutes... 244 3e-63 UniRef50_B1X5A1 Putative tRNA pseudouridine 55 synthase n=1 Tax=... 244 4e-63 UniRef50_D1PGN2 tRNA pseudouridine synthase B n=2 Tax=Prevotella... 243 6e-63 UniRef50_B0MTY5 Putative uncharacterized protein n=1 Tax=Alistip... 243 7e-63 UniRef50_C1A8P0 tRNA pseudouridine synthase B n=1 Tax=Gemmatimon... 242 9e-63 UniRef50_D0NZ97 tRNA pseudouridine synthase B, putative n=1 Tax=... 241 2e-62 UniRef50_A4AHD1 TRNA pseudouridine synthase B n=1 Tax=marine act... 241 3e-62 UniRef50_A6LEL7 tRNA pseudouridine synthase B n=49 Tax=Bacteroid... 240 4e-62 UniRef50_Q820Z5 tRNA pseudouridine synthase B n=2 Tax=Tropheryma... 240 4e-62 UniRef50_A4E6U4 Putative uncharacterized protein n=1 Tax=Collins... 240 5e-62 UniRef50_UPI0000D546F1 tRNA pseudouridine synthase B n=1 Tax=Psy... 240 6e-62 UniRef50_C1XV12 tRNA pseudouridine synthase B n=1 Tax=Meiothermu... 240 7e-62 UniRef50_C0QZ24 Pseudouridylate synthase n=2 Tax=Brachyspira Rep... 239 1e-61 UniRef50_Q8WWH5 Probable tRNA pseudouridine synthase 1 n=26 Tax=... 239 1e-61 UniRef50_C6X4Q1 tRNA pseudouridine synthase B n=1 Tax=Flavobacte... 238 1e-61 UniRef50_D1BAB8 tRNA pseudouridine synthase B n=1 Tax=Thermanaer... 238 2e-61 UniRef50_B2KCA4 tRNA pseudouridine synthase B n=1 Tax=Elusimicro... 238 2e-61 UniRef50_B6YSP4 Probable tRNA pseudouridine synthase B n=13 Tax=... 238 2e-61 UniRef50_D2MPT8 tRNA pseudouridine synthase B n=1 Tax=Bulleidia ... 237 3e-61 UniRef50_D1AY31 tRNA pseudouridine synthase B n=1 Tax=Streptobac... 237 3e-61 UniRef50_Q46GC3 Probable tRNA pseudouridine synthase B n=9 Tax=E... 237 5e-61 UniRef50_Q0SM48 tRNA pseudouridine synthase B n=22 Tax=Borrelia ... 237 5e-61 UniRef50_C6W615 tRNA pseudouridine synthase B n=5 Tax=Sphingobac... 235 2e-60 UniRef50_Q0ZC46 Putative accessory gland protein (Fragment) n=5 ... 235 2e-60 UniRef50_Q72GS9 tRNA pseudouridine synthase B n=4 Tax=Thermaceae... 234 3e-60 UniRef50_D1PVQ5 tRNA pseudouridine synthase B n=1 Tax=Prevotella... 234 3e-60 UniRef50_C3MXC6 rRNA pseudouridine synthase n=7 Tax=Sulfolobacea... 234 4e-60 UniRef50_C1H9D7 Centromere/microtubule-binding protein cbf5 n=5 ... 233 4e-60 UniRef50_A5IY15 tRNA pseudouridine synthase B n=2 Tax=Mycoplasma... 233 7e-60 UniRef50_B5ZBG4 tRNA pseudouridine synthase B n=15 Tax=Ureaplasm... 233 7e-60 UniRef50_UPI00004C24EE COG0130: Pseudouridine synthase n=1 Tax=S... 232 9e-60 UniRef50_C7PUC9 tRNA pseudouridine synthase B n=7 Tax=Bacteroide... 232 9e-60 UniRef50_UPI0001C31DBB tRNA pseudouridine synthase B n=1 Tax=Con... 232 1e-59 UniRef50_Q10KT9 Os03g0370500 protein n=6 Tax=Magnoliophyta RepID... 232 2e-59 UniRef50_A3MS77 Probable tRNA pseudouridine synthase B n=2 Tax=T... 232 2e-59 UniRef50_Q2GEU5 TRNA pseudouridine synthase B n=2 Tax=Neorickett... 231 3e-59 UniRef50_B4U903 tRNA pseudouridine synthase B n=1 Tax=Hydrogenob... 229 1e-58 UniRef50_A4WH37 Probable tRNA pseudouridine synthase B n=36 Tax=... 229 1e-58 UniRef50_Q6KHH8 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 228 1e-58 UniRef50_Q6L1A0 Probable tRNA pseudouridine synthase B n=1 Tax=P... 228 1e-58 UniRef50_C5RLI7 tRNA pseudouridine synthase B n=1 Tax=Clostridiu... 228 1e-58 UniRef50_C1TML1 tRNA pseudouridine 55 synthase n=1 Tax=Dethiosul... 228 2e-58 UniRef50_UPI0000E46C2D PREDICTED: similar to TruB pseudouridine ... 228 2e-58 UniRef50_Q2FRP0 Pseudouridylate synthase n=1 Tax=Methanospirillu... 227 6e-58 UniRef50_C9M6R3 tRNA pseudouridine synthase B n=1 Tax=Jonquetell... 226 8e-58 UniRef50_Q1J0C1 tRNA pseudouridine synthase B n=3 Tax=Deinococcu... 225 1e-57 UniRef50_UPI0000D53150 tRNA pseudouridine synthase B n=1 Tax=Psy... 225 1e-57 UniRef50_P33322 H/ACA ribonucleoprotein complex subunit 4 n=133 ... 225 1e-57 UniRef50_Q73NP8 tRNA pseudouridine synthase B n=1 Tax=Treponema ... 225 2e-57 UniRef50_P59883 tRNA pseudouridine synthase B n=1 Tax=Rhodopirel... 225 2e-57 UniRef50_B3TBA4 Putative TruB family pseudouridylate synthase (N... 224 3e-57 UniRef50_B1L793 Probable tRNA pseudouridine synthase B n=1 Tax=C... 224 4e-57 UniRef50_B6YR70 tRNA pseudouridine synthase B n=12 Tax=Bacteroid... 223 6e-57 UniRef50_A7I5M0 Pseudouridylate synthase n=4 Tax=Methanomicrobia... 223 9e-57 UniRef50_A9A5A3 Pseudouridylate synthase TruB domain protein n=2... 220 5e-56 UniRef50_UPI000038E21C H/ACA RNA-protein complex component Cbf5p... 220 5e-56 UniRef50_Q9HIT4 Probable tRNA pseudouridine synthase B n=2 Tax=T... 219 8e-56 UniRef50_A6Q784 tRNA pseudouridine synthase B n=8 Tax=Epsilonpro... 219 9e-56 UniRef50_A4G0N3 Probable tRNA pseudouridine synthase B n=28 Tax=... 218 2e-55 UniRef50_A7ANK1 tRNA pseudouridine synthase, putative n=1 Tax=Ba... 217 5e-55 UniRef50_B0R686 Probable tRNA pseudouridine synthase B n=10 Tax=... 216 7e-55 UniRef50_B2S4C6 tRNA pseudouridine synthase B n=2 Tax=Treponema ... 216 1e-54 UniRef50_D0JB32 tRNA-pseudouridine synthase I n=1 Tax=Blattabact... 215 2e-54 UniRef50_O44081 H/ACA ribonucleoprotein complex subunit 4 n=74 T... 214 3e-54 UniRef50_Q609C2 tRNA pseudouridine synthase B n=1 Tax=Methylococ... 214 4e-54 UniRef50_B0VFC4 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 213 5e-54 UniRef50_Q4N5B0 TRNA pseudouridine synthase, putative n=1 Tax=Th... 213 6e-54 UniRef50_A0YZZ8 TRNA pseudouridine synthase B (Fragment) n=1 Tax... 213 7e-54 UniRef50_Q98Q19 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 213 8e-54 UniRef50_UPI00016A95FF tRNA pseudouridine synthase B n=1 Tax=Bur... 213 9e-54 UniRef50_UPI00019786FE tRNA pseudouridine synthase B n=1 Tax=Hel... 212 1e-53 UniRef50_B0SH20 Pseudouridylate synthase, N-terminal subunit n=2... 210 5e-53 UniRef50_Q3B200 tRNA pseudouridine synthase B n=12 Tax=Chlorobia... 210 5e-53 UniRef50_Q8I715 tRNA pseudouridine synthase, putative n=7 Tax=Pl... 209 9e-53 UniRef50_Q8CXU1 tRNA pseudouridine synthase B n=6 Tax=Leptospira... 208 2e-52 UniRef50_C8PIZ6 tRNA pseudouridine synthase B n=1 Tax=Campylobac... 207 4e-52 UniRef50_A7ZE50 tRNA pseudouridine synthase B n=3 Tax=Epsilonpro... 207 4e-52 UniRef50_B3PMC8 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 207 6e-52 UniRef50_P60346 Probable tRNA pseudouridine synthase B n=3 Tax=A... 206 7e-52 UniRef50_A8BZ83 Centromere/microtubule binding protein CBF5 n=2 ... 205 2e-51 UniRef50_Q601U7 tRNA pseudouridine synthase B n=3 Tax=Mycoplasma... 205 2e-51 UniRef50_Q8CXQ2 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 205 2e-51 UniRef50_O60832 H/ACA ribonucleoprotein complex subunit 4 n=80 T... 203 5e-51 UniRef50_A9UQA2 Predicted protein (Fragment) n=1 Tax=Monosiga br... 203 9e-51 UniRef50_A7GZ93 tRNA pseudouridine synthase B n=16 Tax=Campyloba... 202 1e-50 UniRef50_Q1CVV6 tRNA pseudouridine synthase B n=2 Tax=Cystobacte... 202 2e-50 UniRef50_Q7M9J1 tRNA pseudouridine synthase B n=3 Tax=Helicobact... 201 2e-50 UniRef50_B5Y924 tRNA pseudouridine synthase B n=1 Tax=Coprotherm... 199 1e-49 UniRef50_B9L8F5 tRNA pseudouridine synthase B n=5 Tax=Epsilonpro... 197 3e-49 UniRef50_P59879 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 197 4e-49 UniRef50_Q30TG2 tRNA pseudouridine synthase B n=1 Tax=Sulfurimon... 197 7e-49 UniRef50_C5J6V5 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 197 7e-49 UniRef50_B3L1T9 Trna pseudouridine synthase, putative n=1 Tax=Pl... 196 8e-49 UniRef50_A9CM09 Cbf5 (Fragment) n=2 Tax=Thermofilum RepID=A9CM09... 195 2e-48 UniRef50_B6K5T9 tRNA pseudouridine synthase n=1 Tax=Schizosaccha... 193 5e-48 UniRef50_B9ZCE8 Pseudouridylate synthase TruB domain protein n=1... 193 9e-48 UniRef50_C3XI25 tRNA pseudouridine synthase B n=1 Tax=Helicobact... 193 9e-48 UniRef50_B2VX57 tRNA pseudouridine synthase B n=2 Tax=Pleosporin... 192 1e-47 UniRef50_Q18GM5 tRNA-pseudouridine synthase n=1 Tax=Haloquadratu... 192 2e-47 UniRef50_D1J822 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 188 2e-46 UniRef50_B8CCU3 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 185 1e-45 UniRef50_Q4A5J8 TRNA pseudouridine synthase B n=1 Tax=Mycoplasma... 183 6e-45 UniRef50_B0CSL3 Predicted protein n=3 Tax=Agaricales RepID=B0CSL... 181 2e-44 UniRef50_C7H129 tRNA pseudouridine synthase B n=1 Tax=Eubacteriu... 173 8e-42 UniRef50_Q980C3 Probable tRNA pseudouridine synthase B n=14 Tax=... 170 5e-41 UniRef50_B9WH58 tRNA pseudouridine synthase, putative n=6 Tax=Sa... 170 8e-41 UniRef50_UPI0001976FFF Pseudouridine synthase n=1 Tax=Bifidobact... 168 3e-40 UniRef50_Q4PA06 Putative uncharacterized protein n=2 Tax=Ustilag... 165 2e-39 UniRef50_A2Q7V7 Contig An01c0080, complete genome n=15 Tax=Leoti... 164 3e-39 UniRef50_B7Z7G5 cDNA FLJ52131, highly similar to Homo sapiens Tr... 164 5e-39 UniRef50_C0NFL8 Pseudouridine synthase n=12 Tax=Eurotiomycetidae... 163 7e-39 UniRef50_A9F237 Probable tRNA pseudouridine 55 synthase n=1 Tax=... 163 1e-38 UniRef50_O95900 Probable tRNA pseudouridine synthase 2 n=22 Tax=... 163 1e-38 UniRef50_B6W932 Putative uncharacterized protein n=1 Tax=Anaeroc... 161 3e-38 UniRef50_O59721 Probable tRNA pseudouridine synthase 4 n=1 Tax=S... 160 5e-38 UniRef50_C9SFT4 tRNA pseudouridine synthase B n=7 Tax=Sordariomy... 158 2e-37 UniRef50_A2XWN3 Putative uncharacterized protein n=2 Tax=Oryza s... 158 3e-37 UniRef50_Q6BPN6 DEHA2E12144p n=6 Tax=Saccharomycetales RepID=Q6B... 156 1e-36 UniRef50_Q6C7U6 YALI0D25234p n=1 Tax=Yarrowia lipolytica RepID=Q... 154 4e-36 UniRef50_B9FC36 Putative uncharacterized protein n=1 Tax=Oryza s... 153 6e-36 UniRef50_Q5KKZ0 Pseudouridylate synthase 4, putative n=2 Tax=Fil... 153 1e-35 UniRef50_B2W7I6 tRNA pseudouridine synthase B n=2 Tax=Pleosporin... 150 5e-35 UniRef50_A4YCT2 PUA domain containing protein n=1 Tax=Metallosph... 150 8e-35 UniRef50_D1Y7J6 tRNA pseudouridine synthase B (Fragment) n=1 Tax... 149 1e-34 UniRef50_P48567 tRNA pseudouridine synthase 4 n=13 Tax=Saccharom... 146 1e-33 UniRef50_B5DZE3 GA24084 n=5 Tax=Diptera RepID=B5DZE3_DROPS 141 3e-32 UniRef50_Q7T013 Novel protein (Zgc:91836) n=8 Tax=Clupeocephala ... 141 4e-32 UniRef50_D1I9G8 Whole genome shotgun sequence of line PN40024, s... 140 4e-32 UniRef50_B7QF44 Putative uncharacterized protein (Fragment) n=1 ... 139 1e-31 UniRef50_UPI00006A5396 PREDICTED: similar to TruB pseudouridine ... 136 7e-31 UniRef50_C3YU77 Putative uncharacterized protein n=1 Tax=Branchi... 136 9e-31 UniRef50_D2VC43 Predicted protein n=1 Tax=Naegleria gruberi RepI... 135 2e-30 UniRef50_B9QMG1 tRNA pseudouridine synthase B, putative n=3 Tax=... 134 5e-30 UniRef50_A4NYM2 tRNA pseudouridine synthase B n=1 Tax=Haemophilu... 133 1e-29 UniRef50_B6W931 Putative uncharacterized protein n=1 Tax=Anaeroc... 132 1e-29 UniRef50_UPI0000D56069 PREDICTED: similar to AGAP002077-PA n=1 T... 132 2e-29 UniRef50_UPI0000519F9E PREDICTED: similar to CG7849-PB, isoform ... 131 2e-29 UniRef50_D2EFU3 PUA domain containing protein n=1 Tax=Candidatus... 128 2e-28 UniRef50_A9BKY1 Cbf5 n=1 Tax=Cryptophyta RepID=A9BKY1_9CRYP 127 5e-28 UniRef50_Q29QN4 CG7849, isoform B n=10 Tax=Drosophila RepID=Q29Q... 125 1e-27 UniRef50_UPI000179347F PREDICTED: similar to CG7849 CG7849-PB n=... 125 2e-27 UniRef50_UPI000058490A PREDICTED: similar to TruB pseudouridine ... 125 2e-27 UniRef50_B4LIK4 GJ21442 n=1 Tax=Drosophila virilis RepID=B4LIK4_... 121 3e-26 UniRef50_UPI0001699077 tRNA pseudouridine synthase B n=1 Tax=End... 120 5e-26 UniRef50_Q4UE86 RNA modification (Pseudouridylation) protein Tru... 120 6e-26 UniRef50_UPI0000E46612 PREDICTED: similar to TruB pseudouridine ... 116 1e-24 UniRef50_UPI000186DFBE conserved hypothetical protein n=1 Tax=Pe... 115 2e-24 UniRef50_A8NNZ6 CG7849-PB, putative n=1 Tax=Brugia malayi RepID=... 113 7e-24 UniRef50_B7Q670 Putative uncharacterized protein n=1 Tax=Ixodes ... 95 3e-18 UniRef50_Q609C4 TRNA pseudouridine synthase B, interruption-C n=... 95 4e-18 UniRef50_A8X1P5 Putative uncharacterized protein n=1 Tax=Caenorh... 94 7e-18 UniRef50_D0GJF7 tRNA pseudouridine synthase B (Fragment) n=1 Tax... 92 2e-17 UniRef50_Q9SMH4 Trans-splicing factor Raa2, chloroplastic n=2 Ta... 91 4e-17 UniRef50_Q9N3X3 Putative uncharacterized protein n=1 Tax=Caenorh... 91 4e-17 UniRef50_B9F4Z0 Putative uncharacterized protein n=2 Tax=Oryza s... 88 6e-16 UniRef50_Q3KMS7 TRNA pseudouridine synthase B n=1 Tax=Chlamydia ... 79 2e-13 UniRef50_A4W1P3 Pseudouridine synthase n=2 Tax=Streptococcus Rep... 74 6e-12 UniRef50_UPI000180D082 PREDICTED: dyskerin n=1 Tax=Ciona intesti... 73 2e-11 UniRef50_Q2R1N7 Kinetochore protein, putative n=1 Tax=Oryza sati... 70 1e-10 UniRef50_D1Y424 Putative uncharacterized protein n=1 Tax=Pyramid... 68 3e-10 UniRef50_A2ARC1 TruB pseudouridine (Psi) synthase homolog 2 (E. ... 68 4e-10 UniRef50_UPI0000D5432F hypothetical protein P700755_23672 n=1 Ta... 66 2e-09 UniRef50_A3DND5 DKCLD domain protein n=1 Tax=Staphylothermus mar... 66 2e-09 UniRef50_Q8SVK5 Putative uncharacterized protein ECU05_0680 n=1 ... 66 2e-09 UniRef50_B7XJU4 Diaminohydroxyphosphoribosylaminopyrimidine deam... 65 3e-09 UniRef50_B9SBQ9 Centromere/microtubule binding protein cbf5, put... 61 6e-08 UniRef50_Q3IRF7 Putative uncharacterized protein n=1 Tax=Natrono... 57 1e-06 UniRef50_C4QHQ2 Expressed protein n=1 Tax=Schistosoma mansoni Re... 56 1e-06 UniRef50_A0B7V3 THUMP domain protein n=5 Tax=Methanosarcinales R... 53 1e-05 UniRef50_D2LNT6 Pseudouridylate synthase 10-like protein n=3 Tax... 51 4e-05 UniRef50_B9CXH0 tRNA pseudouridine synthase B (Fragment) n=1 Tax... 50 1e-04 Sequences not found previously or not previously below threshold: UniRef50_C7P3R6 THUMP domain protein n=3 Tax=Halobacteriaceae Re... 44 0.005 UniRef50_UPI00019042A3 tRNA pseudouridine synthase B n=1 Tax=Rhi... 43 0.012 UniRef50_D2RX25 Pseudouridylate synthase-like protein n=1 Tax=Ha... 43 0.014 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 42 0.031 UniRef50_A5DTZ4 Putative uncharacterized protein n=1 Tax=Loddero... 42 0.033 UniRef50_Q2GY16 Putative uncharacterized protein n=1 Tax=Chaetom... 42 0.033 UniRef50_Q8TUV7 Predicted pseudouridylate synthase n=1 Tax=Metha... 41 0.038 UniRef50_Q649E8 Putative uncharacterized protein n=2 Tax=environ... 41 0.055 CONVERGED! >UniRef50_A1JIX1 tRNA pseudouridine synthase B n=327 Tax=Gammaproteobacteria RepID=TRUB_YERE8 Length = 329 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 223/312 (71%), Positives = 257/312 (82%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M RPRRRGRDINGVLLLDKP G+SSND LQKVKR+++ANRAGHTGALDPLATGMLPICLG Sbjct: 1 MGRPRRRGRDINGVLLLDKPLGLSSNDVLQKVKRLFSANRAGHTGALDPLATGMLPICLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKFSQ+LLDSDKRYRV+ARLGQRTDTSDA+G ++ ER V + Q+ AALD+FRG + Sbjct: 61 EATKFSQFLLDSDKRYRVVARLGQRTDTSDAEGALISEREVNVTQAQMDAALDSFRGSSQ 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+PSMYSALK+QGK LYEYARQGIEV REAR ITVYELLFIR EGN+LELEIHCSKGTYI Sbjct: 121 QVPSMYSALKHQGKPLYEYARQGIEVEREARSITVYELLFIRWEGNDLELEIHCSKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RTIIDDLGE LGCGAHV YLRRL V+ YP +RMVTLE L +VE A+ ++ LD L Sbjct: 181 RTIIDDLGELLGCGAHVSYLRRLQVATYPSDRMVTLEQLTAIVETAQAEERSPNAELDAL 240 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 L+PMDS ++P VNL + Y K G PV +G P EG+VR+TEGE FIG+G I ++ Sbjct: 241 LLPMDSAVLNFPEVNLLPAVAAYVKQGQPVHVAGTPGEGMVRITEGEERNFIGIGTIAED 300 Query: 301 GRVAPRRLVVEY 312 GRVAP+RLVVE+ Sbjct: 301 GRVAPKRLVVEH 312 >UniRef50_C5AH02 TRNA pseudouridine synthase B n=3 Tax=Burkholderiales RepID=C5AH02_BURGB Length = 318 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 144/315 (45%), Positives = 190/315 (60%), Gaps = 19/315 (6%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 RPR R ++GVLLLDKP G+SSNDAL + KR+Y A +AGHTG LDPLA+G+LP+C GEA Sbjct: 10 RPRVPRRLLDGVLLLDKPVGLSSNDALIRAKRLYLAKKAGHTGTLDPLASGLLPLCFGEA 69 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 TKFSQ LL++DK Y RLG RT T DA+G+ +E R V + A L F G+I Q+ Sbjct: 70 TKFSQDLLEADKTYEATMRLGIRTTTGDAEGEAIETREVRVGCAAVEAVLPRFLGEIVQV 129 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALK GK LYEYAR G V RE R +T++ L + E + + CSKGTY+RT Sbjct: 130 PPMYSALKRDGKPLYEYARAGQTVEREGRNVTIHALELLACELPNVTFRVTCSKGTYVRT 189 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +D+GE LGCGAH++ LRR V +E VTL+ L + D L Sbjct: 190 LAEDIGEALGCGAHLVALRRTGVGALTLEHAVTLDALSDAQAAER----------DGWLQ 239 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG-------LVRVTEGENGKFIGMG 295 P+D+ S +P V L + F++G +R + AP G VRV + G+ +G+ Sbjct: 240 PVDALLSTFPPVRLDAEEAKRFRHGQRLRLASAPETGAHDEAGARVRVYDAA-GQLLGVA 298 Query: 296 EIDDEGRVAPRRLVV 310 + D G +AP RLVV Sbjct: 299 RLLD-GVLAPERLVV 312 >UniRef50_Q21H63 tRNA pseudouridine synthase B n=5 Tax=Gammaproteobacteria RepID=TRUB_SACD2 Length = 313 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 144/319 (45%), Positives = 199/319 (62%), Gaps = 15/319 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +R GR I+GV+++DKP G SSN LQ+VKR++ AN+AGHTG+LDPLATG+LP+C G Sbjct: 1 MGNRKRPGRPISGVIVIDKPAGDSSNGVLQRVKRLFFANKAGHTGSLDPLATGVLPVCFG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 +ATKFSQ+LLDSDK Y R G+ TDT+D+DG+++E + + A+ + GDI Sbjct: 61 DATKFSQFLLDSDKEYVSTFRFGEVTDTADSDGEVLESIDASKLTKADVLKAIKAYIGDI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---NELELEIHCSK 176 +Q+P MYSALK G+ LY+ ARQGIEV RE RP+TVYE + E ++ + CSK Sbjct: 121 DQVPPMYSALKRNGQPLYKLARQGIEVEREPRPVTVYEFELLAFRPGAVAEADVRVFCSK 180 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTYIR++ D+G L G HV LRR + +++ +T+E L + ++ AE+ Sbjct: 181 GTYIRSLASDIGADLELGGHVAKLRRTQAGPFTIDQSITIEELEQ------ERGERLAEV 234 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA----PLEGLVRVTEGENGKFI 292 LD L+P D +D+P + L S+ YF G V S VRV + GKF Sbjct: 235 LDHHLLPTDIAVADFPSLELDDNSAFYFSRGQAVMDSRVYRLGDEGDKVRVFDSS-GKFY 293 Query: 293 GMGEIDDEGRVAPRRLVVE 311 G+ EI DEG VAP+RLV + Sbjct: 294 GVAEITDEGTVAPKRLVSQ 312 >UniRef50_Q1LSL0 tRNA pseudouridine synthase B n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=TRUB_BAUCH Length = 317 Score = 335 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 156/304 (51%), Positives = 209/304 (68%), Gaps = 2/304 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +ING++LLDK +G+SSN L KVKR++ +AGHTGALDPLA+GMLPICLGEATKFS+YL Sbjct: 11 NINGIILLDKQEGLSSNYLLHKVKRLFRVQKAGHTGALDPLASGMLPICLGEATKFSKYL 70 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 LD+DKRY V A+LG++T+T DA G I+ RPVT + + ++ F GDI QIP M+S++ Sbjct: 71 LDADKRYIVSAKLGEKTNTYDATGIIINTRPVTINQAMIEHIMEQFYGDIYQIPPMFSSI 130 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 KYQG+ LY+YAR+GI +PR AR + +Y L + + +EL+IHCSKGTYIRTIIDD+GE Sbjct: 131 KYQGRALYKYARKGINIPRSARLVHIYNLQILDWDNTHIELQIHCSKGTYIRTIIDDIGE 190 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LGCGAHV LRRLAV+ Y RM+TLE L+ + A +Q L+ LL+P+DS + Sbjct: 191 LLGCGAHVTMLRRLAVAHYHTARMITLESLQTAITLALRQTPNTLVQLNKLLLPIDSAVA 250 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGK--FIGMGEIDDEGRVAPRR 307 ++P + L S + G V GLVR+ E + F G+GEI G + P+R Sbjct: 251 NFPAIKLSKDSVARVRKGQMVAVDQCWQSGLVRMCENKGETTYFFGIGEITQPGVLKPKR 310 Query: 308 LVVE 311 L+ E Sbjct: 311 LLAE 314 >UniRef50_Q1GXD4 tRNA pseudouridine synthase B n=4 Tax=Betaproteobacteria RepID=TRUB_METFK Length = 302 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 147/305 (48%), Positives = 206/305 (67%), Gaps = 11/305 (3%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R R+I+GVLLLDKP G+SSN ALQ VKR+Y A +AGHTG+LDPLA+G+LPICLGEATK Sbjct: 4 KRVKRNIDGVLLLDKPLGISSNQALQMVKRLYQAAKAGHTGSLDPLASGLLPICLGEATK 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 FS +LLD+DK YR + LG T T D +G+I+ + PVT + +L A L GDI Q+P Sbjct: 64 FSHFLLDADKSYRALVTLGSTTTTGDVEGEIMTQAPVTVTQSELEAILQDMVGDILQVPP 123 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK++GK LY YAR+G+E+PR+ RP+T++ + R +G + E+ + CSKGTYIRT+ Sbjct: 124 MYSALKHEGKALYAYAREGVEIPRKPRPVTIHAIALERFDGKQFEMVVSCSKGTYIRTLA 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G +LGCGAH+ LRRL + + ++ VT+E L ++ + D +L+ + Sbjct: 184 EDIGSRLGCGAHLGGLRRLTTAHFNLKNAVTIEQLDQMSQAER----------DAVLLQV 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 D+ D+P+V L S+ Y G V SG + GL R+ E G F+G+GE G +A Sbjct: 234 DAAIEDFPIVTLDADSAFYLLQGQEVWKSGLSISGLFRLY-SEQGAFLGLGEQTSRGSIA 292 Query: 305 PRRLV 309 PRRL+ Sbjct: 293 PRRLL 297 >UniRef50_C7GDK4 tRNA pseudouridine 55 synthase n=6 Tax=Clostridiales RepID=C7GDK4_9FIRM Length = 321 Score = 332 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 172/310 (55%), Gaps = 10/310 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ + K +G +S D + K++ I + GHTG LDP A G+LP+CLG+ATK L Sbjct: 12 INGIINVYKEKGYTSFDVVAKLRGILKTKKIGHTGTLDPDAEGVLPVCLGKATKVCDLLT 71 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D +K Y + LG+ TDT D G ++EE PV + EQ+ A+ +F G+ Q+P MYSALK Sbjct: 72 DKNKEYVAVMLLGKVTDTQDTTGTVLEEHPVEVTEEQVKEAVLSFTGEYMQVPPMYSALK 131 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKL + AR G+ V R+ARP+ +Y + I+ E + + + CSKGTYIRT+ D+GEK Sbjct: 132 VNGKKLCDLARAGVTVERQARPVQLYSIEIIKMELPRVCMRVRCSKGTYIRTLCQDIGEK 191 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ--AEQQDIPAAELLDPLLMPMDSPA 248 L CGA + L R VS++ V+ + L + E V++ + Q + + +DS Sbjct: 192 LSCGACMESLLRTKVSEFCVQDALRLSEIEERVQKAAGQTQSEQWNAEMFDFIYAVDSVF 251 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGA------PLEGLVRVTEGENGKFIGMGEIDD-EG 301 Y + + NGN ++ + VR+ + E G+FIG+ E + G Sbjct: 252 LQYKKAVICKEWNKLLYNGNRMKKDMFVSYQKDWEQQKVRIYD-EEGRFIGIYEYSEIHG 310 Query: 302 RVAPRRLVVE 311 P +L +E Sbjct: 311 DYKPVKLFME 320 >UniRef50_B3PI98 tRNA pseudouridine synthase B n=5 Tax=Gammaproteobacteria RepID=B3PI98_CELJU Length = 319 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 157/324 (48%), Positives = 210/324 (64%), Gaps = 18/324 (5%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +R+GR ++GVLLL KP GM+SN ALQ+ KR++ A +AGHTG+LDPLATG+LP+C GEA Sbjct: 1 MAKRKGRPVDGVLLLHKPAGMTSNQALQRAKRLFFAEKAGHTGSLDPLATGVLPLCFGEA 60 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQ 121 TKFSQ+LLD+DK YR RLG TDT DADG ++E R + QL +ALD FRG+I Q Sbjct: 61 TKFSQFLLDADKGYRTCIRLGITTDTCDADGDVLETRSAAAITRAQLDSALDAFRGNILQ 120 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGT 178 +P MYSALK G+ LY+ ARQG+EV RE R +T++ L + E E+EL+I CSKGT Sbjct: 121 VPPMYSALKLNGQPLYKIARQGVEVEREPRAVTIHSLDVLAFRPGEVAEVELDIRCSKGT 180 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIR+I +DLG LGCGAHV L R + ++ + LE L E+ + LD Sbjct: 181 YIRSIAEDLGRALGCGAHVKVLHRSLAGSFGEDQCIGLEQLEADYERGGY------DALD 234 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG----APLEGLVRVTEGENG----K 290 L+ D+P + P V+LP S+ YF+ GNPV + A +VRV E+ + Sbjct: 235 AHLVSADAPVASLPAVDLPANSAYYFRQGNPVMDTKVYRIARQGDIVRVFCAESAQSPRQ 294 Query: 291 FIGMGEIDDEGRVAPRRLVVEYPA 314 F+G+GEI D+GRVAP+R++ A Sbjct: 295 FLGLGEITDDGRVAPKRIIANRSA 318 >UniRef50_A1KUJ6 tRNA pseudouridine synthase B n=5 Tax=Neisseriaceae RepID=A1KUJ6_NEIMF Length = 319 Score = 329 bits (844), Expect = 7e-89, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 184/310 (59%), Gaps = 13/310 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+ + + R +NGVLLLDKP+G+SSN ALQK +R+++A +AGHTG LDPLATG+LP+C G Sbjct: 10 MNTGKPQKRAVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFG 69 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKF+QYLLD+DK Y +LG+ + T DA+G+I+ S + A G+I Sbjct: 70 EATKFAQYLLDADKAYTATLKLGEASSTGDAEGEIIATARADISLAEFQTACQALTGNIR 129 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+P M+SALK++GK LYEYAR+GI + R+ R ITVY + + + + + CSKGTYI Sbjct: 130 QVPPMFSALKHEGKPLYEYARKGIVIERKPRDITVYAIDIAEFDAPKAVISVRCSKGTYI 189 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT+ +D+ + +G AH+ LRR + + + + TLE L L E D L Sbjct: 190 RTLSEDIAKHIGTFAHLTALRRTETAGFTIAQSHTLEALANLNETER----------DSL 239 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+P D + +P L + + G R P + VRV ENG+F+G+ E Sbjct: 240 LLPCDVLVAHFPQTVLNDYAVHMLQCGQRPRFEEDLPSDTPVRVYT-ENGRFVGLAEYQK 298 Query: 300 E-GRVAPRRL 308 E R+ RL Sbjct: 299 EICRLKALRL 308 >UniRef50_A8PNK9 tRNA pseudouridine synthase B n=1 Tax=Rickettsiella grylli RepID=A8PNK9_9COXI Length = 309 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 150/312 (48%), Positives = 212/312 (67%), Gaps = 13/312 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R + R I G+LLLDKP+GM+SN ALQKVK+++ A++ GHTG+LDPLATG+LP+CLG Sbjct: 1 MQALRSKKRAITGILLLDKPKGMTSNQALQKVKQLFLADKIGHTGSLDPLATGLLPLCLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 EATKFSQ+LL++DKRY V ARLG +T+T DA+G++++ P+ +S +L A L FRG I Sbjct: 61 EATKFSQFLLNADKRYVVSARLGIKTNTGDAEGEVIKSCPIADYSLNELEAILSHFRGSI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI--RHEGNELELEIHCSKG 177 Q P M+SALKY+G+ LY+ ARQGI V R R + ++ L + + + L LEI CSKG Sbjct: 121 LQTPPMFSALKYKGQPLYKLARQGIVVERRPRTVKIHCLHLLESNEDKSVLSLEIKCSKG 180 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIRT+I+D+GE LGCGA+V LRRL V+ Y ++MV+L+ L+ L + Sbjct: 181 TYIRTLIEDIGESLGCGAYVQNLRRLGVANYCADQMVSLDELQALSQNERY--------- 231 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI 297 L+ +DS S++P+ + ++ Y G + P +GL+R+ EN +FIG+GEI Sbjct: 232 -EKLLNLDSLLSEWPIFKVSQAAAYYLYCGRTLLLPNLPKQGLLRLCLKENDRFIGIGEI 290 Query: 298 DDEGRVAPRRLV 309 + GRV PRRL+ Sbjct: 291 LENGRVMPRRLI 302 >UniRef50_C0GIW2 tRNA pseudouridine synthase B n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIW2_9FIRM Length = 294 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 174/302 (57%), Gaps = 14/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + KP GM+S++ + ++R+ + R GHTG LDP A G+LP+CLG+AT+ S+Y+L Sbjct: 1 MNGIINILKPPGMTSHNVVSFLRRLSSMRRIGHTGTLDPGAAGVLPVCLGQATRVSEYVL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 DK YR LG+ TDT DA G +V E+ V + +++ L +F G QIP MYSA+ Sbjct: 61 HMDKVYRAELTLGKSTDTEDASGTMVAEQAVPVLNKQEITKVLSSFVGQQTQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYE ARQG EV R+AR I VY + ++ + ++ ++ CS+GTY+RT+ ++ E Sbjct: 121 KVGGKKLYELARQGGEVDRKAREIHVYSMKLLQVDKQKITFDVACSRGTYVRTLCREIAE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG H+ +L R V + ++ TLE L L ++ E L +L+ D+ Sbjct: 181 KLGTVGHMSFLLRTGVGPFLLQDSFTLEELSALGQK---------ESLSAVLLSADTALG 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTS--GAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P ++L + NGN + LVR+ E +F+ +G I EGR+ P + Sbjct: 232 HLPAISLSHQQAGRVANGNTISLDTVDLSEGSLVRIY-AEKQQFLAVGRI-KEGRLKPEK 289 Query: 308 LV 309 + Sbjct: 290 VF 291 >UniRef50_D0L0S4 tRNA pseudouridine synthase B n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0S4_HALNC Length = 318 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 156/324 (48%), Positives = 205/324 (63%), Gaps = 22/324 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSR RR GR+ING+LLLDKP G+SSN ALQ+VK ++ A +AGHTG+LDP ATGMLP+C G Sbjct: 1 MSRRRR-GREINGILLLDKPIGLSSNQALQRVKHLFQAAKAGHTGSLDPEATGMLPLCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 AT+ S LLD+DK YRV RLG RT+T D +G ++EERPV +AEQ+ L FRG + Sbjct: 60 HATRVSGLLLDADKTYRVTGRLGLRTETGDMEGAVIEERPVPELTAEQIETYLAPFRGLV 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +Q+P MYSALK GK+LYE AR G V R+AR I Y + + +G + +L +H SKG Y Sbjct: 120 DQVPPMYSALKVNGKRLYELARAGEVVERKARSINFYRIELLNFDGQDFDLLVHSSKGAY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE-------------RMVTLEHLRELVEQA 226 IRT+I+D+GE +GCGA V LRR+ V + E M TL+ L +L E Sbjct: 180 IRTLIEDIGEAVGCGAVVAKLRRIGVGPWLTEWPEAAGDVPAKSATMWTLDELIKLNES- 238 Query: 227 EQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEG 286 A + ++P DS YPVV L S+ + ++G+PV AP G + G Sbjct: 239 -----DAEMAIKHAILPTDSALERYPVVQLDADSAFHIRHGHPVFVPKAPQTGWFCIY-G 292 Query: 287 ENGKFIGMGEIDDEGRVAPRRLVV 310 + F+GMGE+ D+GRVAPRRL Sbjct: 293 PDDLFLGMGEVLDDGRVAPRRLFA 316 >UniRef50_C1D8X0 TruB n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8X0_LARHH Length = 315 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 136/317 (42%), Positives = 189/317 (59%), Gaps = 20/317 (6%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +PR R ++GVLLLDKP GM+SN ALQ+ + ++ A + GHTG LDPLATG+LP+C GEA Sbjct: 5 KPRIERRPLDGVLLLDKPCGMTSNTALQRARWMFRAQKGGHTGVLDPLATGLLPLCFGEA 64 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 TKFS +LLD+DK YR R G + T D +G+I P F EQL A + F G I+Q+ Sbjct: 65 TKFSAFLLDADKGYRATLRFGAVSSTLDREGEITPVAPPAFDREQLDAVIRDFTGVIDQV 124 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALK+QGK LYEYAR G+E+ R+ R +T++ + + +G +++ CSKGTYIRT Sbjct: 125 PPMYSALKFQGKALYEYARAGVEIERKVRQVTIHRIDLLAFDGETAVMDVACSKGTYIRT 184 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+GE+LGCGA++ LRR + + +E+ VTLE L L E D LL+ Sbjct: 185 LAADIGERLGCGAYLTDLRRTTTAGFRLEQTVTLEQLEALDESGR----------DGLLL 234 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTS---------GAPLEGLVRVTEGENGKFIG 293 P D S P V + +G P A +R+ E+G+F G Sbjct: 235 PADILVSHLPKVVVDEADFQRMTHGQPAAVDPEKAVQRDEKAATISRLRLY-AEDGRFFG 293 Query: 294 MGEIDDEGRVAPRRLVV 310 +GEI +GR+ P R++ Sbjct: 294 LGEIRADGRLWPDRMLA 310 >UniRef50_A1WXU9 tRNA pseudouridine synthase B n=4 Tax=Gammaproteobacteria RepID=TRUB_HALHL Length = 304 Score = 327 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 150/313 (47%), Positives = 199/313 (63%), Gaps = 10/313 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M++ RR GR++ GVLL DKP G++SN ALQ+VKR++ A +AGHTG+LDPLATG+LPIC G Sbjct: 1 MAK-RRGGRNVTGVLLFDKPAGVTSNKALQQVKRLFGARKAGHTGSLDPLATGLLPICFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 +ATK S +LLD+DKRY V +LG TDT DA+G + V E + L FRG I Sbjct: 60 DATKVSGFLLDADKRYVVTCKLGVATDTGDAEGTERDRAEVPALDEEAVERGLTGFRGPI 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +Q+P MYSA+K+QG++LY+ ARQG+EV RE R + +Y+L + G+ELEL +HCSKGTY Sbjct: 120 DQLPPMYSAIKHQGQRLYDLARQGVEVEREPRRVEIYDLQLVAVRGDELELSVHCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ +D+ + LG HV LRRL + Y M T E L EQ E LD Sbjct: 180 IRTLAEDIAQALGTVGHVCALRRLGLGPYQDPAMWTEEMLAARAEQGR-------EALDA 232 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+PMDS Y V L + + G PV AP EG +R+ + G F+GMG+ D Sbjct: 233 TLLPMDSALQQYTGVELADDLAYFVVQGQPVFVPKAPSEGWLRLYD-RGGNFLGMGQALD 291 Query: 300 EGRVAPRRLVVEY 312 +GR+ P+RLV Sbjct: 292 DGRIGPKRLVARR 304 >UniRef50_Q2SML1 tRNA pseudouridine synthase B n=3 Tax=Gammaproteobacteria RepID=TRUB_HAHCH Length = 311 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 149/310 (48%), Positives = 195/310 (62%), Gaps = 8/310 (2%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R R++G +NGV+++DKPQ +SN LQKVK NA +AGHTGALDPLATG+LP+C G Sbjct: 1 MAR-RKKGAPLNGVMVVDKPQDWTSNAVLQKVKYALNAQKAGHTGALDPLATGVLPLCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFSQ LLDSDK Y A LG+ T TSDADG I+ E PV S L + L FRG++ Sbjct: 60 EATKFSQLLLDSDKEYVTCAYLGRTTTTSDADGDIIAESPVPGLSVSDLESVLGKFRGNL 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +QIPSMYSALK++G LY+ ARQGIEV REAR I ++EL + + L L + CSKGTY Sbjct: 120 KQIPSMYSALKHKGTPLYKLARQGIEVEREARDIIIHELELLDYTPPFLRLRVLCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR +++D+G+ LGCGAHV+ LRR + + V E + E Q AAE Sbjct: 180 IRNLVEDIGQVLGCGAHVMELRRTRCGPFSLADSV--EFVSFADESGRQ---AAAEKYKE 234 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+P+DS + + L ++ G V+ S EG VR+ FIG+GE+ Sbjct: 235 RLLPIDSSVQQFSEIILDEANTGSIIQGQTVKISPLSSEGKVRLYTNRRH-FIGLGEVMS 293 Query: 300 EGRVAPRRLV 309 +G V P RL+ Sbjct: 294 DGTVKPVRLL 303 >UniRef50_Q1QSZ2 tRNA pseudouridine synthase B n=3 Tax=Proteobacteria RepID=TRUB_CHRSD Length = 307 Score = 325 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 140/312 (44%), Positives = 196/312 (62%), Gaps = 16/312 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RR G I+GVLLLDK G+SSN ALQ+V+R+Y+A +AGHTG LDP+ATG+LP+C G Sbjct: 1 MARRRR-GTPIDGVLLLDKAPGVSSNRALQQVRRLYDAQKAGHTGTLDPMATGLLPVCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFS YLLD+DK YR RLG+ TDT DA+G ++E V + AAL FRG++ Sbjct: 60 EATKFSAYLLDADKTYRTWVRLGEVTDTGDAEGTVIEHHSVPALDERDIEAALAGFRGEV 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 EQ+P MYSALK+QG+ LYE AR+G V R AR +TVY++ + E ELE+ CSKGTY Sbjct: 120 EQVPPMYSALKHQGRPLYELAREGKHVERAARRVTVYDMRLLSCEAEGFELEVRCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ +D+G LGCGAH+ LRRL + + M L +L + + Sbjct: 180 IRTLAEDIGHALGCGAHITSLRRLRSGPFEADAMHAFSALEDLDAASR----------EA 229 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNP--VRTSGAPLEGLVRVTEGENGKFIGMGEI 297 L+P+D+ + P + + ++S +G + T+G + R+ + F+G+ + Sbjct: 230 RLLPVDTMLTHLPSLEVAASASRRLLHGQRAQIDTAGLAAQSTARLY--RDAAFLGLVTV 287 Query: 298 DDEGRVAPRRLV 309 + G VAPRRL+ Sbjct: 288 TECGEVAPRRLL 299 >UniRef50_C4ZJR7 tRNA pseudouridine synthase B n=4 Tax=Betaproteobacteria RepID=C4ZJR7_THASP Length = 328 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 138/309 (44%), Positives = 190/309 (61%), Gaps = 12/309 (3%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 + R R+++GVLLLDKPQGMSSN ALQ +R+ A +AGHTG LDP+A+G+LP+ GE Sbjct: 22 PQRRIVRREVDGVLLLDKPQGMSSNGALQTARRLLAAAKAGHTGTLDPMASGLLPLTFGE 81 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQ 121 ATKF+Q LLD+DK Y + RLG TD+ DA+G+++ RPV L A L+ FRG+IEQ Sbjct: 82 ATKFAQMLLDADKTYEAVVRLGVDTDSGDAEGKVLATRPVAVDRAALEAVLERFRGEIEQ 141 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 +P MYSALK GK LYEYAR GIE+ R AR + ++ L + G + +HCSKGTYIR Sbjct: 142 VPPMYSALKRDGKALYEYARAGIELERAARRVVIHALELLDFAGERFTIRVHCSKGTYIR 201 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 ++ D+G LGCGAH+ LRR A+ + + +TLE L E D LL Sbjct: 202 SLAMDIGAALGCGAHLAALRRTAIGAFDLSGALTLEALEAAGEGGR----------DALL 251 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 P+D+ + +PV+ L ++ G + +GA VR G F+G+ + D+G Sbjct: 252 APVDALVAGFPVLQLDAEAARGLLQGRTLALAGAQPGAKVRAYGP--GGFLGLAQWQDDG 309 Query: 302 RVAPRRLVV 310 R+A RRL+ Sbjct: 310 RLAARRLIA 318 >UniRef50_C4ZBF1 tRNA pseudouridine synthase B n=9 Tax=Firmicutes RepID=C4ZBF1_EUBR3 Length = 299 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 107/309 (34%), Positives = 172/309 (55%), Gaps = 19/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + K +G +S D + K++ I++ + GHTG LDP A G+LP+CLG+AT+ L Sbjct: 2 VNGIINVYKEKGYTSFDVVAKLRGIFHQKKIGHTGTLDPDAQGVLPVCLGKATRVCDLLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK Y+ + LGQ TDT D GQ++ + V + + + A+ F G +Q+P MYSALK Sbjct: 62 DKDKVYKAVLLLGQETDTQDISGQVLNQAKVNVTEQAVYDAISQFIGRQKQVPPMYSALK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYE AR+G + R+AR I V+++ + E+ + +HCSKGTYIRT+ +D+GE+ Sbjct: 122 VNGKKLYELAREGKVIERKARDIEVFDIKVESIDLPEVTMTVHCSKGTYIRTLCNDIGER 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC + L R+ V+ + +E +TL ++ V++ ++MP+D + Sbjct: 182 LGCHGCMKSLLRVRVAGFDLEHALTLSQIQSKVDEGCFD----------MVMPVDGVFEN 231 Query: 251 YPVVNLPLTSSVYFKNGNPVRT-------SGAPLEGLVRVTEGENGKFIGMGEIDDE-GR 302 P V+ + +NGN + A + RV G F+G+ DE G Sbjct: 232 LPAVHTASDADKLVRNGNKIPAVLTDYLKHSADSDIRYRVY-NHEGIFVGVYSYLDETGE 290 Query: 303 VAPRRLVVE 311 P ++ +E Sbjct: 291 FKPVKIFME 299 >UniRef50_A8FDD4 tRNA pseudouridine synthase B n=29 Tax=Bacilli RepID=TRUB_BACP2 Length = 309 Score = 322 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 112/314 (35%), Positives = 173/314 (55%), Gaps = 23/314 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 INGVLLL K +GM+S+D + KV++I + + GHTG LDP +G+LPIC+G ATK +YL Sbjct: 2 INGVLLLHKERGMTSHDCVFKVRKILHTKKVGHTGTLDPEVSGVLPICIGRATKIVEYLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 D K Y +G T T D G+IVEE+ V S E++ AAL F+G IEQIP M+SA Sbjct: 62 DKSKTYDAEITIGFSTTTEDQTGEIVEEKKVQNPISEEEIDAALKQFQGTIEQIPPMFSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-----LELEIHCSKGTYIRTI 183 +K GKKLYEYAR+GIE+ R +R I+++ + E + CSKGTY+RT+ Sbjct: 122 VKIGGKKLYEYAREGIEIERPSREISIHRIERTTPALFENGTVSFRFTVLCSKGTYVRTL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D+G+KLG AH+ +L R + ++ +TL+ LR++ E+ +D L+P Sbjct: 182 AVDIGKKLGFPAHMSHLIRTGSGDFTLDECITLDELRDISEEG---------TVDEHLVP 232 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSG----APLEGLVRVTEGENGKFIGMG--EI 297 ++ + P + T + +NG + E V V +G+ + + Sbjct: 233 IERALNHLPKWEINDTLASKVENGAVLPMPDEFAHFAEEDRVAVF-APSGRCMAIYMKHP 291 Query: 298 DDEGRVAPRRLVVE 311 + + P +++ + Sbjct: 292 TKQNLMKPAKILSQ 305 >UniRef50_B1XV87 tRNA pseudouridine synthase B n=2 Tax=Polynucleobacter necessarius RepID=B1XV87_POLNS Length = 303 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 128/307 (41%), Positives = 179/307 (58%), Gaps = 20/307 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+GV+LLDKP GMSS DA+ VK +NA++AGHTG LDP+ATG+LPICLGEATK+SQ LL Sbjct: 5 IDGVVLLDKPAGMSSQDAVTAVKHAFNADKAGHTGTLDPMATGLLPICLGEATKYSQDLL 64 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ------LAAALDTFRGDIEQIPS 124 ++DK Y + G RTDT DA+GQI+EE P+ A L A L F G I Q+P Sbjct: 65 EADKTYIAQVKFGARTDTGDAEGQIIEELPLPTFANDAEIKIALDALLPKFAGPISQVPP 124 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK GK LYEYAR G+E+ R R I ++ + + E LE+ CSKGTYIR + Sbjct: 125 MYSALKRDGKPLYEYARAGVELERIPRDIVIHSIRWTNINWPEATLEVSCSKGTYIRVLA 184 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G LGCGAH++ LRR V +E+ +E ++ ++ + ++P+ Sbjct: 185 EDIGNALGCGAHLVGLRRTEVGHLTLEQSFKIESIQNGLQNS-----------ADYILPV 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVT--EGENGKFIGMGEIDDEGR 302 D+ P + + + + G V + +E LVR+ FIG + G Sbjct: 234 DALLQTLPHLTVDEQQAKRLEMGQRVPLNLPSIEALVRIYRATAAPHNFIGTADWRS-GV 292 Query: 303 VAPRRLV 309 + P+RL+ Sbjct: 293 LHPKRLI 299 >UniRef50_Q3ZXU5 tRNA pseudouridine synthase B n=5 Tax=Dehalococcoides RepID=TRUB_DEHSC Length = 300 Score = 321 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 11/302 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L ++KP G++S D + KV+RIY+ R GH G LDP ATG++P+ LG +T+ +YL Sbjct: 1 MDGILNINKPFGITSFDVVAKVRRIYSQKRVGHGGTLDPYATGVIPVFLGRSTRLIEYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TD+ D++G+I + + E + L F+G+I QIP MYSA+ Sbjct: 61 SVSKTYLAEIELGVETDSYDSEGEITFRKTCDYVTREMIYKTLMDFQGEIIQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K++G +LY ARQGIEV R R T+Y + + + L + I C GTYIR++ DLG Sbjct: 121 KHRGMRLYNLARQGIEVERIPRVATIYGIELLNYTSPVLRVRIECGHGTYIRSLAFDLGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCGA++ L R A ++ + + L + L +L+P+++ Sbjct: 181 KLGCGAYLKSLVREAYGQFNLANSLDFADLEAAKCDGK---------LAGILLPLETAIG 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P V+L + NG + V V EN F+ + + + +G P ++ Sbjct: 232 HLPRVSLDEKNITRLVNGLEITLDRIDKPEAVAVYNAEN-SFVAIIQPETDGTWHPAKVF 290 Query: 310 VE 311 + Sbjct: 291 IR 292 >UniRef50_C4Z5P0 tRNA pseudouridine synthase B n=2 Tax=Bacteria RepID=C4Z5P0_EUBE2 Length = 303 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 165/311 (53%), Gaps = 21/311 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVL + K QG +S+D + K++ I + GHTG LDP A G+LP+C+G+ATK + Sbjct: 1 MNGVLNVYKEQGFTSHDVVAKLRGILKTKKIGHTGTLDPDAVGVLPVCIGKATKLCDLIT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K Y + LG TDT D G+IV + V S + + F G+ EQIP MYSALK Sbjct: 61 DWGKTYEAVMLLGTTTDTLDISGKIVAQSEVNVSEVDVLKVCNEFIGEYEQIPPMYSALK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHE----GNELELEIHCSKGTYIRTIIDD 186 Y G+KLYE AR+GIE+ R+ R + + L + + + CSKGTYIR++ DD Sbjct: 121 YNGQKLYELARKGIEIERKPRTVHINTLRVNDINLSDKQKTVTITVDCSKGTYIRSLCDD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G+KLGCGA ++ L R V ++ ++ +TL + LV + E ++ + +D Sbjct: 181 IGKKLGCGACMMKLTRTRVGEFMLDDTLTLNQISALVLKGE---------IEDRITGIDK 231 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAP------LEGLVRVTEGENGKFIGMGEIDDE 300 SDY + S Y NGN + P RV + + FIG+ E DE Sbjct: 232 IFSDYQEIKFAEEYSRYLHNGNKLSREQIPADAAISDNEKYRVYDS-DKCFIGVYEFRDE 290 Query: 301 GRVAPRRLVVE 311 + P ++ E Sbjct: 291 -VLYPVKIFYE 300 >UniRef50_UPI000178873D tRNA pseudouridine synthase B n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178873D Length = 303 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 99/311 (31%), Positives = 160/311 (51%), Gaps = 20/311 (6%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + G+L + KP G +S+D + KV+ + R GHTG LDP TG+LP+CLG AT+ +Y Sbjct: 2 TQLEGILAVHKPAGWTSHDVVAKVRGMVRLKRIGHTGTLDPEVTGVLPLCLGRATRVVEY 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYS 127 L + K Y + RLG TDT D G +VE V + ++ AL +FRG I Q+P MYS Sbjct: 62 LQELPKEYHAVLRLGYSTDTEDITGNVVETADEVRVTRDEALEALQSFRGQISQVPPMYS 121 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE----GNELELEIHCSKGTYIRTI 183 A+K GK+LYE AR+G V R++R +T++E+ + E+ + CSKGTYIRT+ Sbjct: 122 AVKINGKRLYELAREGKTVERKSRTVTIHEIEMTDFDAEGEYTEISFRVLCSKGTYIRTL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D+G KLG + ++ L R + + +TLE + + ++ E L L+P Sbjct: 182 CVDIGRKLGLPSVMVKLVRTISAGITEAQCLTLEQIEQFMKD---------ETLQTRLIP 232 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRT----SGAPLEGLVRVTEGENGKFIGMGEIDD 299 +D + + G + + +R+ + + F+G+ + + Sbjct: 233 VDQAIHHLAKHTVSEEKAEAALKGQRLSSRAVEPAVDSSEPIRLYDIKEN-FLGIYKRQE 291 Query: 300 E-GRVAPRRLV 309 E G + P ++ Sbjct: 292 ETGAIVPVKVF 302 >UniRef50_Q812X9 tRNA pseudouridine synthase B n=128 Tax=Bacilli RepID=TRUB_BACCR Length = 307 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 105/312 (33%), Positives = 165/312 (52%), Gaps = 20/312 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + GV+LL KP+GM+S+D + K+++I R GHTG LDP TG+LPIC+G ATK +Q+L Sbjct: 1 MEGVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG T T DA G++VE + V + ++ L G IEQ+P M+SA Sbjct: 61 SETKTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRMEVEKVLAELTGTIEQMPPMFSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYEL------LFIRHEGNELELEIHCSKGTYIRT 182 +K GKKLYEYAR G EV R R IT++E E + CSKGTY+RT Sbjct: 121 VKVNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRT 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +GEKLG +H+ +L R A ++ +E ++ E + E V+ ++ + + Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENVQNG---------TVESIFI 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-- 300 +D S +P + + + KNG ++ + V + +N + + + E + Sbjct: 232 SIDEALSKFPKMVVDEKQAEKIKNGMFLKNELEITAPFITVFD-KNDRCLAIYEHHPKHP 290 Query: 301 GRVAPRRLVVEY 312 G + P +++V Sbjct: 291 GMLKPMKVLVNN 302 >UniRef50_Q3SWP7 tRNA pseudouridine synthase B n=100 Tax=Alphaproteobacteria RepID=TRUB_NITWN Length = 358 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 167/310 (53%), Gaps = 7/310 (2%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 ++PRR RD++G + LDKP GM+S A+ VKR+++A RAGH G LDPLA+G LPI LGE Sbjct: 41 NQPRRDKRDVHGWVALDKPVGMTSTQAVAVVKRLFSAKRAGHAGTLDPLASGGLPIALGE 100 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQ 121 ATK +++D KRYR G+ DT D +G+ V +AE + A L +F G IEQ Sbjct: 101 ATKTVPFVMDGRKRYRFTVAWGEERDTDDTEGRAVATSAERPTAEAIMALLPSFTGKIEQ 160 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGTYI 180 IP YSA+K QG++ Y+ AR G VP RP+ ++ L H + E C KGTY+ Sbjct: 161 IPPQYSAVKIQGERAYDLARDGEVVPLAPRPVEIHHLNLADHQDSGHSVFEAECGKGTYV 220 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + D+G LGC H+ LRR V + M+ LEHL+ L ++A + L Sbjct: 221 RALARDMGRLLGCYGHICALRRTLVGPFDETSMIPLEHLQALCDRAASGEGN----LADA 276 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL-VRVTEGENGKFIGMGEIDD 299 L+P+++ D P + + + G V G + V G+ + + E+ Sbjct: 277 LLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPNMSGTVYVTVAGRLLALAEL-G 335 Query: 300 EGRVAPRRLV 309 G + P+R+ Sbjct: 336 NGELIPKRVF 345 >UniRef50_B4RMB1 tRNA pseudouridine synthase B n=20 Tax=Betaproteobacteria RepID=TRUB_NEIG2 Length = 306 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 123/297 (41%), Positives = 174/297 (58%), Gaps = 12/297 (4%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + R +NGVLLLDKP+G+SSN ALQK +R+++A +AGHTG LDPLATG+LP+C GEA K Sbjct: 4 KPAKRPVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEAAK 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 F+QYLLD+DK Y +LG+ + T DA+G+I+ S + A G+I Q+P Sbjct: 64 FAQYLLDADKAYTATLKLGEASSTGDAEGEIIAAARADISLAEFQTACQALTGNIRQVPP 123 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 M+SALK++GK LYEYAR+GI + R+ R ITVY + + + + + CSKGTYIRT+ Sbjct: 124 MFSALKHEGKPLYEYARKGIVIERKPRDITVYSIDIAEFDAPKAVISVRCSKGTYIRTLS 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 + + + +G AH+ LRR + + + + TLE L L D LL+P Sbjct: 184 EGIAKHIGTFAHLTALRRTETAGFTIAQSHTLEALANL----------DETERDNLLLPC 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEIDDE 300 D S +P L + + G R P + VRV ENG+F+G+ E E Sbjct: 234 DVLVSHFPQTVLNDYAVHMLQCGQRPRFEEDLPSDTPVRVYT-ENGRFVGLAEYQKE 289 >UniRef50_C6D2E9 tRNA pseudouridine synthase B n=2 Tax=Paenibacillus RepID=C6D2E9_PAESJ Length = 300 Score = 319 bits (818), Expect = 9e-86, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 163/309 (52%), Gaps = 20/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ + KP G +S+D + KV+RI R GH G LDP+ TG+LP+CLG +T+ +YL Sbjct: 1 MDGIIAVWKPAGWTSHDVVAKVRRIVRMKRIGHAGTLDPMVTGVLPLCLGRSTRVVEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y + +LG TDT D G ++EE+ + + EQ+ L +F G+I+Q+P M+SA+ Sbjct: 61 ERPKAYEAVIQLGTATDTEDLTGTVLEEQTGIIVTREQVLQVLQSFVGEIDQVPPMFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIID 185 K GK+LYE AR+G V R++R +T++++ + + + CSKGTYIRT+ Sbjct: 121 KVDGKRLYELAREGKTVERKSRKVTIHQIDLLNVDLDADKPRFAFSVICSKGTYIRTLCV 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G LG A + L R E+ VTLE L EL + L+ ++P D Sbjct: 181 DIGRALGVPAAMAELTRTMSGGITREQCVTLEELEELQAAGK---------LEEKMLPAD 231 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVR----TSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 V + G + + LVR+ GEN FIG+ E DD+ Sbjct: 232 IAIDHLQRVQANAAVTEMALRGQKIPYNRMAASFDSSSLVRLY-GENDAFIGIFEADDQA 290 Query: 302 -RVAPRRLV 309 + P ++ Sbjct: 291 SALKPVKVF 299 >UniRef50_A4G7S5 tRNA pseudouridine synthase B (TRNA pseudouridine 55 synthase) (Psi55 synthase) (TRNA-uridine isomerase) (TRNA pseudouridylate synthase) n=5 Tax=Burkholderiales RepID=A4G7S5_HERAR Length = 314 Score = 319 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 183/310 (59%), Gaps = 15/310 (4%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +++ ++GVLLLDK G+SSNDAL K K + NA +AGHTG LDP ATG+LP+C GEATK Sbjct: 7 KKKRVPVHGVLLLDKQAGVSSNDALIKAKWLLNALKAGHTGTLDPFATGLLPLCFGEATK 66 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 F+Q LLD+DK Y + LG T+T D +G ++ V S +Q+ A L FRGDIEQ+P Sbjct: 67 FAQDLLDADKTYETVVHLGVTTNTGDTEGDVIATHAVDISRQQIDAVLAQFRGDIEQVPP 126 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK GK LYEYAR GI + REARP+T++ L F+ + L L + CSKGTYIR + Sbjct: 127 MYSALKRDGKPLYEYARAGITLEREARPVTIHLLEFVDFQAPFLTLRVRCSKGTYIRVLG 186 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G LGCGAH+ LRR+ V + + +T+E L A L + Sbjct: 187 EDIGAALGCGAHLNALRRIQVGDLLIAQAITIEELTAKDADARI----------AALASV 236 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSG-----APLEGLVRVTEGENGKFIGMGEIDD 299 D+ + +P + L + F +G + +G +R+ +G+ +G G + + Sbjct: 237 DALLTSFPALRLSEELAKRFLHGQRLALGKENIVLPEGQGRMRIYRESDGQLLGTGLMQE 296 Query: 300 EGRVAPRRLV 309 +AP RL+ Sbjct: 297 YSILAPERLI 306 >UniRef50_A9KNW1 tRNA pseudouridine synthase B n=6 Tax=Clostridiales RepID=TRUB_CLOPH Length = 307 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 163/316 (51%), Gaps = 27/316 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + K +G +S D K++ I + GHTG LDP A G+LP+C+G ATK L Sbjct: 1 MNGIINVYKEKGFTSFDVCAKLRGILKQKKIGHTGTLDPDAEGVLPVCVGNATKLCDLLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK Y + LG TDT D G+++E R VT + +++ ++ F +QIP MYSA+K Sbjct: 61 DKDKVYEAVLTLGIITDTEDMTGEVLERRLVTATYDRVLEVVEQFTRTYDQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--------NELELEIHCSKGTYIRT 182 G+KLYE ARQG + R+ R +T++ + + +E+ + + CSKGTYIR+ Sbjct: 121 VNGQKLYELARQGKVIERKPRTVTIHAIDILGVTPLEEQPEIVHEVRMRVSCSKGTYIRS 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+GE L CG + L R VS + +E + L + E V+ L+ +LM Sbjct: 181 LCRDIGEALQCGGCMKSLIRTQVSIFTLENTLRLAEIEECVKNQ---------TLEQVLM 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG--------LVRVTEGENGKFIGM 294 P+D P V + S + NGN + E +RV + E+ F G+ Sbjct: 232 PVDKLFLSMPKVVVKKESCKFLYNGNQLVEDNFTWEKVSDQINIDKIRVYDSED-VFTGI 290 Query: 295 GEIDD-EGRVAPRRLV 309 E D+ + P ++ Sbjct: 291 YEYDEKKNCYQPVKMF 306 >UniRef50_B8I6F0 tRNA pseudouridine synthase B n=5 Tax=Clostridium RepID=B8I6F0_CLOCE Length = 309 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 107/319 (33%), Positives = 170/319 (53%), Gaps = 31/319 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L + KP GM+S D + ++++ + GH G LDP A G+LP+C+G ATK ++++ Sbjct: 1 MNGILNVLKPAGMTSFDVIGYMRKLTGQKKIGHAGTLDPSAVGVLPLCIGNATKALEFMI 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + DK YR LG TDT D+ G ++ V + + ++ +F G IEQ+P MYSA+K Sbjct: 61 NKDKVYRAELTLGISTDTQDSSGTVLSFHSVDVTENDIKKSIISFMGTIEQLPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIR----------------HEGNELELEIHC 174 GKKLYE ARQG + RE+R I +Y + IR ++ L+IHC Sbjct: 121 IGGKKLYELARQGQTIERESRTIQIYNIDIIRIWDDSEVFESEGIPQEFAIKKVLLDIHC 180 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKGTYIRT+ D+GEKLGCG H+ +L R +Y ++ +T+E + +L E Sbjct: 181 SKGTYIRTLCHDIGEKLGCGGHMSFLVRTRAGQYDLDNSLTIEEVAQLSET--------- 231 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP-LEGLVRVTEGENGKFIG 293 + L+ L+P++ +Y + L + NG + RV N F+G Sbjct: 232 KSLEVHLLPVEKVFEEYDRIELNKEELFKYNNGVWLEVEKNKYKNTFYRVYN--NNSFLG 289 Query: 294 MGEIDDEG---RVAPRRLV 309 +GE+ ++G + ++ Sbjct: 290 LGEVFEKGNTLYLKSKKFF 308 >UniRef50_Q5WFU5 tRNA pseudouridine synthase B n=2 Tax=Bacillaceae RepID=TRUB_BACSK Length = 302 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 148/307 (48%), Gaps = 20/307 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+++LDKP+G +S+D + ++++ + + GHTG LDP G+LPIC+G+ATK +Y+ D Sbjct: 5 GIVVLDKPKGWTSHDCVHQMRKWFQTRKVGHTGTLDPEVDGVLPICIGKATKVVKYMSDY 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y G T T DA G++VEE+ V F+ ++ A L F G IEQ P YSA+K Sbjct: 65 DKTYIGEVTFGVATTTEDAHGEVVEEKRVNKPFTRTEIEALLQAFIGKIEQTPPYYSAVK 124 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH-----EGNELELEIHCSKGTYIRTIID 185 GK+LYEYAR GIEV R R + + L + C+KGTYIRT+ Sbjct: 125 VNGKRLYEYARAGIEVERPTRTVEIKALTLTEITTAKPGCFSFAFSVTCTKGTYIRTLAV 184 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G+K G AH+ L R A + + L E+ L P+D Sbjct: 185 DIGKKAGYPAHMSKLTRTASGPFTQADAIPLSAFAEMSLDERL----------NKLRPLD 234 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI--DDEGRV 303 + +P V +NG + S + +G E G + + + G + Sbjct: 235 TALQHFPRVTADKELEKRIRNGAVLEKSASFGDGRFLFY-NEQGDCLALYQAHPTKAGLI 293 Query: 304 APRRLVV 310 P L Sbjct: 294 KPETLFC 300 >UniRef50_D1PLN1 tRNA pseudouridine synthase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN1_9FIRM Length = 297 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 162/302 (53%), Gaps = 11/302 (3%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L +DKP G +S D L K++ + GH+G LDP+ATG+L + +G+AT + L+ Sbjct: 5 NGILPVDKPAGWTSFDVLAKLRGALGTRKLGHSGTLDPMATGVLAVFIGKATAAADRQLN 64 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y R GQRTDT D G ++E PVT E+L A L F G+ Q+P MYSA+K Sbjct: 65 HDKTYEATLRFGQRTDTGDITGTVLETAPVTIGEEELRAVLPRFMGEQMQLPPMYSAVKI 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+ LY+ AR+G V R RPITVY + ++ + + L I CSKGTYIR + +D+G+ Sbjct: 125 NGQPLYKAARKGQTVERTPRPITVYSIEYLGTPKPGDYTLRIACSKGTYIRVLAEDIGKA 184 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG A + LRR ++ + + TL + E+ + D ++P+++ + Sbjct: 185 LGVPATLAALRRTRAGEFEISQCHTLPDILAAAEKGTLTE-------DGWILPVETVFAP 237 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 P + + + NG P + A +G R + E G F+G+ + G + +L Sbjct: 238 LPTLTVNDGVKAHLFNGCP-TSHYAAADGRYRAYDKE-GTFLGLAAVKG-GVLQVEKLFC 294 Query: 311 EY 312 E Sbjct: 295 ER 296 >UniRef50_B9ZLN1 tRNA pseudouridine synthase B n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZLN1_9GAMM Length = 319 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 134/329 (40%), Positives = 189/329 (57%), Gaps = 26/329 (7%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RR ++G+LLLDKP+G SS L +VK + A +AGHTGALDP ATG+LP+C G Sbjct: 1 MARARRE---VDGILLLDKPRGPSSTQVLGRVKYLLQARKAGHTGALDPRATGLLPLCFG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 +ATK S +LLD+DK Y A+LG TD++D DG I+ E PV E+L A F G Sbjct: 58 QATKVSGWLLDADKHYVAEAQLGVETDSADLDGAIIREAPVPAIEPERLRALEQQFSGAQ 117 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 EQ+P M SALK+ G++LYE AR+G+EV R RP+ ++ L L +++ CSKGTY Sbjct: 118 EQVPPMVSALKHDGQRLYELARRGVEVERPPRPVQIHALSIEAIAPERLRIDVRCSKGTY 177 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R+++ D+G LGCGA V LRR+ + MVT+E + E I A Sbjct: 178 VRSLVVDIGHALGCGAAVDSLRRIGHGPFEAAAMVTMEQVEAAFEAGGAAAIEA------ 231 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNP-----VRTSGAPLEG----------LVRVT 284 +L ++ +P V+L +S ++G+P + + EG LVRV Sbjct: 232 MLQAPETALGHWPSVSLNAQASAAMRHGHPADPEAIESRTPGTEGAPVEAESGWPLVRVY 291 Query: 285 EGENGKFIGMGEIDDEGRVAPRRLVVEYP 313 + E G F+ +G + +GRV PRRL V P Sbjct: 292 DAEGG-FLAVGAREPDGRVRPRRLFVPAP 319 >UniRef50_C8P7Y2 tRNA pseudouridine synthase B n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P7Y2_9LACO Length = 317 Score = 316 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 101/309 (32%), Positives = 161/309 (52%), Gaps = 19/309 (6%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + ++G++ L K +GM+S D + +++RI + GH+G LDP G+LPIC+G ATK +Y Sbjct: 17 QKMDGIIPLYKERGMTSFDCVSRLRRILKTRKIGHSGTLDPAVDGVLPICVGNATKAVEY 76 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMY 126 L+ S K Y+ +G+ T+T D DG++V + PV S EQ+ AA+ G I Q+P MY Sbjct: 77 LMQSGKIYQGELVIGRATETEDFDGRVVAQTPVPAPLSDEQVRAAMAKLTGKITQVPPMY 136 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIR------HEGNELELEIHCSKGTYI 180 SA+K GK+LYEYAR G V R AR +T+ E +R H+ + ++ CSKGTYI Sbjct: 137 SAVKVNGKRLYEYARAGETVERPARQVTITEFTLVRSHYDQEHQEQHVFFKVACSKGTYI 196 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT++ DL +LG + +L RLA + +++ ++L ++ V + Sbjct: 197 RTLVVDLARQLGYPGAMKWLTRLASGGFTLDQTLSLADIQTAVANQ---------TIKRY 247 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 L P+D DYP V L +NG + + V +G+ + + Sbjct: 248 LYPLDYALKDYPAVELTDQQWRAVQNGGWLTAAELSPAAAE-VVLKYDGQVKALYH-QAD 305 Query: 301 GRVAPRRLV 309 P ++ Sbjct: 306 NHYQPTKMF 314 >UniRef50_Q8RA40 tRNA pseudouridine synthase B n=10 Tax=Thermoanaerobacteraceae RepID=TRUB_THETN Length = 285 Score = 316 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 176/302 (58%), Gaps = 20/302 (6%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++GVL + KP GM+S+D + +++IY + GHTG LDP A G+LP+C+G ATKF+ YL Sbjct: 2 SVDGVLNVLKPPGMTSHDVVDFIRKIYGIKKVGHTGTLDPDAAGVLPVCMGRATKFTSYL 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 ++ DKRYR G TDT D G+IVE PV + E+L L F+G+I+QIP +YSA Sbjct: 62 MEHDKRYRFEITFGFSTDTLDKSGKIVESGPVPLFTLEKLQEVLSQFKGEIQQIPPIYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE-GNELELEIHCSKGTYIRTIIDDL 187 K +GKKLYEYAR+G EV +TVYEL I+++ + L L++ CSKGTY+R ++ D+ Sbjct: 122 KKVKGKKLYEYARKGEEVEIPPIKVTVYELELIKYDAPHHLLLDVKCSKGTYVRALVRDI 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 +KL H+ +L R V + +E TLE ++E + + P+D Sbjct: 182 CKKLEVPGHMSFLIRTEVGDFDIESSYTLEEIKEGKAE---------------VQPVDK- 225 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 +P V L SS NG +R + LV++ + G FIG+G + E ++ P+R Sbjct: 226 FIKFPSVELDEVSSNKILNGQFIRNTYNVENSLVKLYDNH-GIFIGIGVAEGE-KIRPKR 283 Query: 308 LV 309 L Sbjct: 284 LF 285 >UniRef50_A5UZQ6 tRNA pseudouridine synthase B n=5 Tax=Chloroflexaceae RepID=A5UZQ6_ROSS1 Length = 300 Score = 316 bits (809), Expect = 9e-85, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 158/301 (52%), Gaps = 8/301 (2%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L +DKP GM+S+D + +++R+ R GH G LDP ATG+L + LG AT+ +Y+ Sbjct: 1 MHGFLNIDKPAGMTSHDVVARIRRLSGQRRVGHAGTLDPAATGVLVVALGGATRLIEYVQ 60 Query: 71 DSD-KRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 K+YR LG T T DADG+I+ P+ E + AL RG I Q P MY+A Sbjct: 61 HQTLKQYRATVCLGVTTTTDDADGEIIARHPLPPLDRETVERALAPLRGTIWQTPPMYAA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 L ++G++LYE AR G+ V R + + L + + L L++ C GTYIR + DLG Sbjct: 121 LHHEGRRLYELARAGVTVETPPRQVHIERLDLVAFDPPLLTLDVVCGSGTYIRALARDLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCGAH+ LRR AV + +E + L L E+A+ + +P ++++ L+P D Sbjct: 181 AALGCGAHLAALRRTAVGTFRIEDALPLRVLE---EEAQAEALPTSDIVRRHLLPPDIAV 237 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 +D+ V + S+ ++G P+ +G I + D P ++ Sbjct: 238 ADWYAVQVDEASARRLRHGMPLVAP--SGAAPRARAHAPDGTLIAILRF-DGTYWRPIKV 294 Query: 309 V 309 Sbjct: 295 F 295 >UniRef50_Q2BH44 TRNA pseudouridine synthase B n=1 Tax=Neptuniibacter caesariensis RepID=Q2BH44_9GAMM Length = 307 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 147/304 (48%), Positives = 208/304 (68%), Gaps = 10/304 (3%) Query: 18 DKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYR 77 +KP G+SSN ALQ+V+RIY+A +AGHTGALDPLATGMLPICLGEATKFSQ+LLDSDKRY Sbjct: 2 NKPPGISSNSALQQVRRIYDAAKAGHTGALDPLATGMLPICLGEATKFSQHLLDSDKRYI 61 Query: 78 VIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDT-FRGDIEQIPSMYSALKYQGK 134 A+LG RTD+SDADG +VEE+PV + +++ A L + F G+IEQ+PSM+SALK+QG+ Sbjct: 62 TTAKLGVRTDSSDADGAVVEEKPVPTDLTEDKIDAILQSEFSGEIEQVPSMFSALKHQGQ 121 Query: 135 KLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCG 194 LY+ AR+GI+V + R +T++E+ +E++LE++CSKGTYIR+I++DLG LGCG Sbjct: 122 PLYKLARKGIQVEVKPRKVTIHEIKLTALRDDEIDLEVYCSKGTYIRSIVEDLGHILGCG 181 Query: 195 AHVIYLRRLAVSKYPVERMVTLEHLRELVEQA--EQQDIPAAELLDPLLMPMDSPASDYP 252 AHV L RL V + +RM++L+ LRELV + E+Q LD LL+P + D P Sbjct: 182 AHVKMLHRLDVGAFTADRMMSLDELRELVPENTTEEQQKGIQIELDKLLLPAWAAVDDLP 241 Query: 253 VVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVT----EGENGKFIGMGEIDDEGRVAPRRL 308 V L + +G V + L+R+ + + +F+G+ E+ E ++ P+RL Sbjct: 242 AVRLNDQQTSLIMHGQAVANANYAEGSLIRLFGTSLDSDAERFLGVAEVV-EQQLKPKRL 300 Query: 309 VVEY 312 + Sbjct: 301 ICTE 304 >UniRef50_C3RL16 tRNA pseudouridine synthase B n=4 Tax=Bacteria RepID=C3RL16_9MOLU Length = 283 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 94/298 (31%), Positives = 146/298 (48%), Gaps = 22/298 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++L++KP GM+S+D + K++RI + GH G LDP ATG+L +C+ +ATK Q+L Sbjct: 4 MDGIILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLT 63 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TDT DA G+I+E + ++ A + F G EQ P +YSA+ Sbjct: 64 SESKEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAI 123 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYEYAR G +V R +TV L ++ E N ++ ++ CSKGTYIR++ DL + Sbjct: 124 KVNGKKLYEYARAGEQVEVPTRSVTVNHLEILQIENNLIKFKVGCSKGTYIRSLCYDLAK 183 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG H+ L R + +E TLE + + ++ + Sbjct: 184 ALGYPGHMKDLIRTKSGNFSLENCFTLEQIENGEYTT---------------VSLEEALN 228 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 Y + + +G +++ V GK + M D G + R Sbjct: 229 SYQQLVVDDE--KIIFHGKKIKSDLNEQ----VVILNRQGKVLAMYGPDGNGYLKSIR 280 >UniRef50_Q6F7I5 tRNA pseudouridine synthase B n=20 Tax=Proteobacteria RepID=TRUB_ACIAD Length = 318 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 140/306 (45%), Positives = 191/306 (62%), Gaps = 14/306 (4%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + R ++GV LL+KP G+SSN LQKV+ ++ A +AGHTGALDPLATG+LPICLGEATK Sbjct: 24 KISRRPVSGVFLLNKPLGLSSNGVLQKVRWLFRAQKAGHTGALDPLATGLLPICLGEATK 83 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIP 123 FS YLLDS KRY+ + +LGQ T T D +G++V+ R V + + L LD FRGDI+Q+P Sbjct: 84 FSHYLLDSTKRYQTVVKLGQVTTTGDVEGKVVQSRSVPPLTRDMLELVLDGFRGDIQQVP 143 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 MYSALK G+ LYE ARQGIE+ REARP+T++ L + + L L++ CSKGTYIR + Sbjct: 144 PMYSALKRDGRPLYELARQGIEIEREARPVTIHALKLVDFDTESLTLDVTCSKGTYIRVL 203 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 +D+GE LGCG H+ L R+ + + TLE+L +L E D LL+ Sbjct: 204 GEDIGEALGCGGHLTALHRVQTGHFELVPEYTLEYLEQLNETER----------DMLLLA 253 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 +P P V +P YF NG S + + V E + +G+ EI D+ R+ Sbjct: 254 PYAPVDYLPQVQIPEGRLKYFCNGQE---SNIDHDAVPEVLVFEGERCLGLAEITDKKRL 310 Query: 304 APRRLV 309 P+RL+ Sbjct: 311 VPKRLL 316 >UniRef50_B8FR03 tRNA pseudouridine synthase B n=2 Tax=Desulfitobacterium hafniense RepID=B8FR03_DESHD Length = 294 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 170/306 (55%), Gaps = 19/306 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+ + KP GM+S+D + +++RI N + GHTG LDP TG+LPIC+G+AT+ ++Y+ Sbjct: 1 MDGVINVLKPPGMTSSDVVVRLRRILNTRKIGHTGTLDPEVTGVLPICVGKATRLAEYIT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K YR G TDT DA G+I+ + P SAE + + G I QIP M+SA+K Sbjct: 61 NQGKSYRCEMIFGITTDTQDASGEILHKEPAQVSAEDFQRLIPQYLGSIRQIPPMFSAVK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDDL 187 +QGK+LYE ARQG+EV R +R I + L + E + E+ CSKGTYIRT+ D+ Sbjct: 121 HQGKRLYELARQGLEVERTSREIHIDHLQLMEWIAGEYPKAIFEVDCSKGTYIRTLCHDM 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+ LGCGAH+ L RL + ++ ++LE ++ +EQ + L+P Sbjct: 181 GQTLGCGAHMSALIRLRSGPFHIQESLSLETIQNFMEQDDY----------SFLIPYIQV 230 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV----RVTEGENGKFIGMGEIDDEGRV 303 D P V+L ++ F+NG S + + V G F+G+G E + Sbjct: 231 L-DLPRVSLSPQRALAFRNGLSTAKSQIEVGAEIGEGCEVQVFSEGNFLGIGIWR-EQAL 288 Query: 304 APRRLV 309 P ++ Sbjct: 289 CPYKVF 294 >UniRef50_A1HSB7 TRNA pseudouridine synthase B n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSB7_9FIRM Length = 292 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 162/303 (53%), Gaps = 18/303 (5%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + KP GM+S+DA+ V+R+Y R GH G LDP A G+LP+ +G AT+ +Y D+ Sbjct: 4 GILNILKPPGMTSHDAVAFVRRLYGVKRVGHAGTLDPAAAGVLPVFVGAATRLIEYTADA 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK YRV +G+ TDT D G I+ P V L A L F G+IEQIP MYSA+K Sbjct: 64 DKSYRVEMTVGRETDTGDDTGNIIRTAPCVLPPISDLDALLQEFTGEIEQIPPMYSAIKI 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 G+KLY+ ARQGI V R+ R I + ++ I + ++ CSKGTYIRT+ D+G +L Sbjct: 124 GGQKLYDLARQGIIVERQPRRIKINKIQLIAVREQRIYFDVDCSKGTYIRTLCTDIGRRL 183 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GC A + +L R V + + +TLE + E L D + + Sbjct: 184 GCPAVMSFLVRTRVGNFQLTEALTLEEIAAEKE--------------RALQAPDLAVAHF 229 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR-VAPRRLVV 310 P + L + + G VR +G++R+ + +FIG+GE G + P ++V Sbjct: 230 PPIFLTVAQAKAIVQGQAVRID-CRNQGMIRLY-NDQKQFIGIGEKQGPGAPLRPVKIVC 287 Query: 311 EYP 313 P Sbjct: 288 TNP 290 >UniRef50_A8RZ93 Putative uncharacterized protein n=8 Tax=Clostridiales RepID=A8RZ93_9CLOT Length = 320 Score = 314 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 104/324 (32%), Positives = 165/324 (50%), Gaps = 26/324 (8%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 + + +G++ + K G +S+D + +++ I + GHTG LDP A G+LP+CLG Sbjct: 5 AARSKEHTMYHGIINVYKEPGYTSHDVVARLRGILKQKKIGHTGTLDPAAEGVLPVCLGA 64 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER---PVTFSAEQLAAALDTFRGD 118 T+ L D K Y+ + LG TDT D G I+ E ++ + EQ+ A+ F+GD Sbjct: 65 GTRLCDMLTDRSKTYQAVMLLGCETDTQDTTGTILAEDREGALSLAEEQVNEAVMGFKGD 124 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 QIP MYSALK GKKLYE AR G EV R R + + ++ R E + +E+ CSKGT Sbjct: 125 YAQIPPMYSALKVDGKKLYELARAGKEVERRPRAVQILDIKVSRIELPRVWMEVTCSKGT 184 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIRT+ D+G LGCG + +L R V ++ +E +TL+ L +L +QA ++ Sbjct: 185 YIRTLCHDIGRLLGCGGCMEHLTRTRVDRFSIEDSLTLDQLEQLRDQA---------AVE 235 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT------------SGAPLEGLVRVTEG 286 ++P++ YP + + NGNP +GA + R+ + Sbjct: 236 SCILPVEEALQSYPPLGCLPEADSLLHNGNPCFARHLDWSQSDQWKAGAEDGQMFRMYDS 295 Query: 287 ENGKFIGMGEIDDE-GRVAPRRLV 309 N +F G+ + + P ++ Sbjct: 296 -NHRFTGVYQYQKDRHWWKPWKMF 318 >UniRef50_Q31GK3 tRNA pseudouridine synthase B n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=TRUB_THICR Length = 303 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 128/313 (40%), Positives = 178/313 (56%), Gaps = 18/313 (5%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +++ + I+G++LL+KP+G++SN LQ+V+R+YNA +AGHTGALDP ATG+LPICLGEA Sbjct: 1 MAKKQWQKIDGIVLLNKPEGVTSNGLLQQVRRVYNAKKAGHTGALDPFATGLLPICLGEA 60 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQ 121 TK S LLDSDKRY +LG TD+ D DG ++ V S L F GD+ Q Sbjct: 61 TKISGLLLDSDKRYIATLQLGLETDSGDKDGNPLKTIAVPALSKAMLETVFSQFEGDVMQ 120 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 +P MYSALK+QGK LYEYAR+GI + R ARPI +YEL I E + E+ CSKGTY+R Sbjct: 121 VPPMYSALKHQGKPLYEYARKGIHIERAARPIHIYELKLIDFENTVVRFEVLCSKGTYVR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ +D+ + LG H+ L R + M TLE + D L Sbjct: 181 TLGEDIAKALGTVGHLTGLHRTQTGALTGDEMATLEEIELNK--------------DAYL 226 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI-DDE 300 P+D P ++L + +G + P LVR + + +FIG+GE ++ Sbjct: 227 QPLDLPLKHLQAIHLNAKDTDKILHGGKLAVEE-PETLLVRFYDPQQ-RFIGVGEWQQEK 284 Query: 301 GRVAPRRLVVEYP 313 + P+RL P Sbjct: 285 QLLKPKRLFNLNP 297 >UniRef50_A3WPV5 TRNA pseudouridine 5S synthase n=1 Tax=Idiomarina baltica OS145 RepID=A3WPV5_9GAMM Length = 319 Score = 312 bits (800), Expect = 9e-84, Method: Composition-based stats. Identities = 143/318 (44%), Positives = 199/318 (62%), Gaps = 17/318 (5%) Query: 1 MSRPR-RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M + R R+GR INGVLLLDKP+ M+SN A+Q VKR+Y A + GHTGALDPLATG+LP+CL Sbjct: 1 MGQARPRKGRPINGVLLLDKPKEMTSNRAIQVVKRLYEAQKVGHTGALDPLATGLLPVCL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 GEATKFSQYLLD+DK YRV A+LG RT TSDA+G++VE+ PV S QL + F G+ Sbjct: 61 GEATKFSQYLLDADKAYRVEAQLGVRTTTSDAEGEVVEQNPVDVSDTQLNDIIAQFTGEQ 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q PS+YSALKY+GK LY YAR+GI+VPR+ R I+V + + +G+ + L++ CSKGTY Sbjct: 121 AQTPSIYSALKYEGKPLYYYARRGIDVPRKTRTISVRAIELLHRDGDFVTLQVACSKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT++DD+G+ LGCGAHV LRR V+ + +LE L + ++ Sbjct: 181 IRTLVDDMGQALGCGAHVRELRRTHVANLTDAQQWSLEALEQCDDEQRL----------A 230 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPV---RTSGAPLEGLVRVTEGENG---KFIG 293 L P+D+ + P + + +G PV + R+ FIG Sbjct: 231 CLEPVDTLLNGLPTQTISQAEARDVMHGQPVFNRTLDTQAVGDECRLCAKSTAGHSVFIG 290 Query: 294 MGEIDDEGRVAPRRLVVE 311 + + +G++ P+R++ Sbjct: 291 VVVLRKDGKLWPKRVLAL 308 >UniRef50_C0ZF47 tRNA pseudouridine synthase B n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZF47_BREBN Length = 308 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 166/311 (53%), Gaps = 18/311 (5%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 ++NGVL++DKP GM+S+D + +++R+Y + GHTG LDP TG+LPIC+G AT+ +Y Sbjct: 2 SNVNGVLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGHATRLVEY 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQIPSM 125 L + KRY V+ RLG T T DA G++VE+ V + E++ A ++F G++EQ+P M Sbjct: 62 LQELPKRYDVVMRLGSTTTTEDASGEVVEQAGVDAAWITTERIQALFESFLGEMEQVPPM 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIR 181 +SA+K GK+LY+ AR+G + R+AR +T+YEL + + ++ CSKGTY+R Sbjct: 122 FSAVKVNGKRLYDLAREGTVIERQARKVTLYELTLHKISVDGDTVDVAFTCTCSKGTYMR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ DLG LG AH+ LRR+ + + + L+ + E E + L Sbjct: 182 TLCVDLGRALGYPAHMKLLRRIKSGPFQEQEAIPLQQIEEQAASGE--------DISRHL 233 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID--D 299 + + S P + +NG G E + +G+ + D Sbjct: 234 VSIPQAISFLPSFQVKPERIKAVRNGLATALPGVTAEEGSLICLFAGEDLLGIHRVCRGD 293 Query: 300 EGRV-APRRLV 309 +G P ++ Sbjct: 294 KGLFAKPEKVF 304 >UniRef50_Q8K9H3 tRNA pseudouridine synthase B n=4 Tax=Buchnera aphidicola RepID=TRUB_BUCAP Length = 312 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 206/303 (67%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 + R++NG LLLDKP+GM+SN+ LQKVK I+ A +AG+ G LDPLATG+LPIC GEATKFS Sbjct: 5 KKRNVNGFLLLDKPKGMTSNNVLQKVKIIFKAKKAGYIGTLDPLATGILPICFGEATKFS 64 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMY 126 YL SDK Y VIARLG++T TSD+DG IV +RP+ F+ QL+ AL G + QIPSMY Sbjct: 65 NYLNASDKHYNVIARLGEKTSTSDSDGIIVRKRPILFTPIQLSLALKALTGSVNQIPSMY 124 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SA+KY+G LY+YARQGI V R R + +Y++ + + N +EL +HCSKGTYIRT+I+D Sbjct: 125 SAVKYKGIPLYKYARQGINVKRNIRCVFIYKIDLVDQKDNWIELNVHCSKGTYIRTLIED 184 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LGEKL CGAHVI LRRL + ++V L L L+ + I + +D LLMP+D+ Sbjct: 185 LGEKLFCGAHVIRLRRLKIGLLSYSKLVKLSFLENLLNEKNVVKINFFKKIDDLLMPVDT 244 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 P P + + + F+ G V S + GLVRV E +N FIG+G+I+ E + P Sbjct: 245 PVYFLPKIYISIEKLSVFRLGQKVNFSSSITNGLVRVFEKDNNTFIGLGKINSEKTLIPY 304 Query: 307 RLV 309 RLV Sbjct: 305 RLV 307 >UniRef50_UPI0000E0F5A1 tRNA pseudouridine synthase B n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F5A1 Length = 331 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 160/330 (48%), Positives = 212/330 (64%), Gaps = 22/330 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R RR+GR INGV LLDKP G SSN+ LQKV+ +Y A +AGHTGALDPLA+GMLPICLG Sbjct: 1 MGR-RRKGRAINGVFLLDKPLGESSNNVLQKVRAMYGAAKAGHTGALDPLASGMLPICLG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKFSQ+LLD+DK Y V A LG RT TSDADG++V PVT + + + AA +F G + Sbjct: 60 EATKFSQFLLDADKTYEVTATLGIRTTTSDADGEVVSTLPVTSTEDDIRAACLSFVGASK 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 QIPSM+SALK++GK LY YARQGIE+ R AR IT++ L +R EG EL++ +HCSKGTYI Sbjct: 120 QIPSMFSALKHEGKPLYWYARQGIEIDRPARDITIFALDILRIEGVELDMRVHCSKGTYI 179 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ-DIPAAELLDP 239 R+++DD+G+ LGCGA+V L R V+ YP ++M++L+ L+ LV+ +DP Sbjct: 180 RSLVDDIGQVLGCGAYVSRLHRSQVAGYPSDKMMSLDALQTLVDTHRIDKGSEHHPYIDP 239 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNP-----------------VRTSGAPLEGL-- 280 LL+PMD P K G P V+ +G Sbjct: 240 LLLPMDIPLYALGSTVATDAQINGVKVGMPFIPAKMTPAQVDETVVDVKAMALSKDGFEQ 299 Query: 281 VRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 V+V + E+G + E+ D+G + P+R+VV Sbjct: 300 VKVYD-ESGNIYAVAELKDDGYLHPKRVVV 328 >UniRef50_C7I1W4 tRNA pseudouridine synthase B n=1 Tax=Thiomonas intermedia K12 RepID=C7I1W4_THIIN Length = 345 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 121/321 (37%), Positives = 170/321 (52%), Gaps = 21/321 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+ + +N VLLL+KP+G++S AL +V+R A +AGH G LDPLA G+L +C G Sbjct: 1 MNVQKTPWEAVNSVLLLNKPRGLTSQQALFRVRRRLRAAKAGHGGTLDPLADGLLMLCFG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 ATKF+Q L++DKRY + +LG RT T DA+G+IVE R V S Q+ A L F G I Sbjct: 61 AATKFAQRHLEADKRYVAVLQLGVRTTTDDAEGEIVERRAVEVSRSQVDAVLPRFIGAIS 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q P +YSALK GK LY YAR G V AR + ++ + + + ++L L +HC KGTYI Sbjct: 121 QTPPVYSALKRDGKPLYAYARAGETVEVAARTVQIHSMDVLSLQNDQLALAVHCGKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + D+GE LGCGAH+ L R A + +E+ +TL+ L L Sbjct: 181 RALARDIGEALGCGAHLAALTRTASGGFSLEQALTLDEAEALAS----------ADLRSR 230 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL----EGLVRVT----EGENGKFI 292 L+P D P NL + F +G + VRV G++ + Sbjct: 231 LLPTDVLLQSSPRQNLDAAQAQRFLHGARLSGLAPDEPVVPGEDVRVYGPLAAGQDAVLL 290 Query: 293 GMGEIDDEG---RVAPRRLVV 310 G+G + + PRRL+ Sbjct: 291 GIGAWEQGAESVVLTPRRLLC 311 >UniRef50_Q0SSD7 tRNA pseudouridine synthase B n=33 Tax=Clostridium RepID=TRUB_CLOPS Length = 294 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 110/309 (35%), Positives = 178/309 (57%), Gaps = 22/309 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGV+ + K GM+S D + V+R+ + GHTG LDP A+G+LP+CLG+ATK Y++ Sbjct: 1 MNGVINIYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPEASGVLPVCLGKATKIIDYIM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 ++ K YRV +LG TDT D +G+++ E + +++ +++F G I+Q+P MYSAL Sbjct: 61 ENKKVYRVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFVGTIDQVPPMYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE-GNELELEIHCSKGTYIRTIIDDLG 188 K G +LYE ARQGIEV REAR IT+Y + I+ E + +++++ CSKGTYIR++ D+G Sbjct: 121 KQNGVRLYELARQGIEVHREARKITIYSIENIKIESNDNIQMDVCCSKGTYIRSLCYDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 EKL GA + L R+ + E + +E L ELL+ ++ ++ Sbjct: 181 EKLNVGATMTALERIQNGPFIKEEAINIEDL-------------TEELLEKHIISIEKAL 227 Query: 249 SDYPVVNLPLTSSVYFKNG-----NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 + + + +NG N + + L RV E +NG F+G+G+ D++G Sbjct: 228 DSFEKITVNEKFGKLLRNGVKVFDNRMYSEEVEFNKLYRVYE-DNGVFLGLGKRDEKG-F 285 Query: 304 APRRLVVEY 312 +L++E Sbjct: 286 KLEKLLIEE 294 >UniRef50_A8MFB1 tRNA pseudouridine synthase B n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=TRUB_ALKOO Length = 299 Score = 311 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 117/309 (37%), Positives = 177/309 (57%), Gaps = 20/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L + KP GM+S+D + V++ N + GHTG LDP A G+LPIC+G+ATK SQ+LL Sbjct: 1 MNGILNILKPPGMTSHDVVSVVRKKLNMKKVGHTGTLDPNAAGVLPICIGQATKISQFLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K+YR LG T+T D DG+I+ +R VT S +++ A+ +F G+ +QIP MYSA+K Sbjct: 61 DGKKKYRAELTLGIETNTEDIDGEILRQREVTSSPDEIREAVLSFIGEYKQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +GKKLYE ARQG+E+ R R +T+Y + I ++ ++ CSKGTYIRT+ D+GE Sbjct: 121 IKGKKLYELARQGVEIERAERTVTIYHIEIIEIFKEKVIFDVLCSKGTYIRTLCKDIGEV 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCG + +L R A S + ++ +T+E L+ L E ++ +L+PMD P Sbjct: 181 LGCGGVMSFLLRTASSDFSLDTAITIEELQAL------------ENVEDILLPMDYPLQH 228 Query: 251 YPVVNLPLTSSVYFKNGNPVRTS------GAPLEGLVRVTEGENGKFIGMGEIDDEG--R 302 + S NGN + ++ P+ V V + G+ +D Sbjct: 229 MSKAIVKSAYSKQVLNGNRIYSNYLIDTIHEPIGQEVCVYLEKEFVGFGIVRNEDHNQKY 288 Query: 303 VAPRRLVVE 311 + RL+ E Sbjct: 289 IKILRLLFE 297 >UniRef50_A8LL26 tRNA pseudouridine synthase B n=42 Tax=Rhodobacterales RepID=TRUB_DINSH Length = 304 Score = 310 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 167/310 (53%), Gaps = 12/310 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R R++GR ++G +++DKP G+SSN + KV+ ++A +AGH G LDP ATG+L I LG Sbjct: 1 MGR-RKKGRAVSGWIVIDKPAGLSSNAVVGKVRWAFDAQKAGHAGTLDPEATGVLAIALG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK ++ D+ K Y RLGQ T+T D +G++ E S +++ AAL F GDI Sbjct: 60 EATKTVPFVTDALKAYEFTVRLGQATNTDDGEGEVTETSDARPSDDEIRAALPPFEGDIL 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTY 179 Q+P +SA+K G++ Y AR G E+ ARP+ V L FI R + + + LE+ C KG Y Sbjct: 120 QVPPQFSAVKIDGERAYARARAGQEMEIAARPLYVDSLTFIARPDPDHVTLEMVCGKGGY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R+I DLG LGC HV LRR + + LE L +L + LD Sbjct: 180 VRSIARDLGRALGCFGHVKSLRRTWSGPFELSDATPLETLEDLAKD---------PALDA 230 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 LMP+++ +D P + + +NGNP + E NG + +G Sbjct: 231 HLMPLETGLADLPELPCTPEGAARMRNGNPGMVRASDAEYGETAWASYNGTAVAVGTYRA 290 Query: 300 EGRVAPRRLV 309 G + P R+ Sbjct: 291 -GELHPTRVF 299 >UniRef50_Q0AYI5 tRNA pseudouridine synthase B n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=TRUB_SYNWW Length = 299 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 167/307 (54%), Gaps = 20/307 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++G L ++KPQ M+S D ++K+K++ + GH G LDP+A G+LP+ +G T+ ++ Sbjct: 1 MHGFLNINKPQAMTSFDVIKKLKKVLPRKYKLGHLGTLDPMAEGVLPVAVGCGTRIIPFV 60 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D K Y LG +DT DA G I P Q+ L FRG Q+P MYSA+ Sbjct: 61 EDETKEYIATMTLGASSDTQDAWGVITYHTPRKIEPAQVEKVLALFRGKSRQVPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG----NELELEIHCSKGTYIRTIID 185 ++GK+LYE ARQG+EV R+AR I ++EL + + +L L + CS+GTYIRT+ Sbjct: 121 HHEGKRLYELARQGLEVERKAREIEIFELELLNADWEQELPQLSLRVSCSRGTYIRTLCH 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G++LGCGA++ LRR + +E V+L+++ E E L L+P+D Sbjct: 181 DIGQELGCGAYLSSLRRSRSGCFKIEEAVSLDYIIEKREN-----------LSRALLPLD 229 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGE---IDDEGR 302 P ++ P+++L NG + +G VR+ G+ + + E +++ Sbjct: 230 YPINNLPLISLKSAELPAIINGRQISRTGKLASPRVRLYT-PEGQLLAIAEANNYNEDTV 288 Query: 303 VAPRRLV 309 + P R+ Sbjct: 289 LQPCRVF 295 >UniRef50_D1CFW9 tRNA pseudouridine synthase B n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFW9_THET1 Length = 301 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 98/309 (31%), Positives = 160/309 (51%), Gaps = 14/309 (4%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 R + +NG ++++KP G++S + ++K++++A R GH G LDP ATG+LPI LG+A Sbjct: 4 RKNQSKEFLNGFIVINKPLGVTSQWVVNRIKKLFSARRVGHVGTLDPFATGVLPIALGKA 63 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 + ++ + K Y G +T T D +G I+ + + S + +A L F G IEQ Sbjct: 64 NRLAEVIHSQPKSYVAELSFGFKTSTGDLEGDIIAQSDIIPSPKDIAEILPEFIGQIEQT 123 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P YSA+K +G++ YE ARQG E+ R + +Y L + L+L I CS GTYIR+ Sbjct: 124 PPKYSAIKVEGRRAYELARQGQELTLPTRKVEIYSLEALEFRACTLKLAISCSSGTYIRS 183 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +D+ E+LG ++ L R +V + +E +T+E L + + + L+ Sbjct: 184 LAEDIAERLGAYGYLSNLVRTSVGAFSIESSITIEELESVGDYLQP----------ALIH 233 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE--GLVRVTEGENGKFIGMGEIDDE 300 P D + P V L NG V+ + E LVR+ NG+ +G+ E D Sbjct: 234 PPDDALTHLPAVMLDERDVQRISNGATVKMAHISEEPIPLVRIYSA-NGEIVGLAESRDN 292 Query: 301 GRVAPRRLV 309 PR ++ Sbjct: 293 TLF-PRIML 300 >UniRef50_D2MK32 tRNA pseudouridine synthase B n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK32_9BACT Length = 325 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 102/315 (32%), Positives = 159/315 (50%), Gaps = 25/315 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVL + KP G +S+D + KV+R+ + GH G LDP ATG+LP+ LG+ T+ S +LL Sbjct: 19 HGVLNVSKPAGWTSHDVVAKVRRLLQVPKVGHAGTLDPAATGVLPVLLGKGTRLSAFLLH 78 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y + RLGQ T T DA G IV + PV E + A+ F G+ +Q+P MYSA+K Sbjct: 79 WDKEYEAVLRLGQETTTQDATGAIVRDCPVPELRPETVHEAVAQFHGEQQQVPPMYSAVK 138 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+ LY+ AR G + R +RP+T+Y + ++ L + CSKGTYIRT+ D+G Sbjct: 139 IGGQPLYKAARAGKTLDRPSRPVTIYHIEIRALALPDVTLRVRCSKGTYIRTLCADIGRV 198 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG G H+ L R V + ++R +L+ + + + + +D + Sbjct: 199 LGVGGHLSRLIRSRVGPFHLDRAWSLDDIGRVDDLFGHPG---------AFLNLDEALAH 249 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEIDDEGR 302 P V + NG PV + P+E L RV + + G+ + +G+ Sbjct: 250 LPAVVVDPAMVEKVMNGAPVSGATLWSEDHRETPVETLFRVKD-DMGRLLALGKWAPSTL 308 Query: 303 ------VAPRRLVVE 311 + ++ E Sbjct: 309 DVPGYELQMVKVFAE 323 >UniRef50_C6IW07 tRNA pseudouridine synthase B n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IW07_9BACL Length = 305 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 98/310 (31%), Positives = 146/310 (47%), Gaps = 20/310 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + KP G +S+D + K + I R GHTG LDP TG+LP+CLG AT+ +YL D Sbjct: 6 GILPIHKPAGFTSHDVVAKCRGILKMKRIGHTGTLDPAVTGVLPLCLGRATRMVEYLQDL 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y LG TDT D G+I+E+ V + E + L F G I QIP MYSALK Sbjct: 66 PKEYEATLVLGVATDTEDMTGEIIEQVNEVQVTEEDVRRVLSRFVGTISQIPPMYSALKQ 125 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHE----GNELELEIHCSKGTYIRTIIDDL 187 GK+LYE AR+G V R+ R +T+Y+L + + CSKGTYIRT+ D+ Sbjct: 126 DGKRLYELAREGKTVERKPREVTIYQLELLAFHPEGLHPRISFRALCSKGTYIRTLCVDI 185 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G LG A + L+R + +TL+ + L L+P+D Sbjct: 186 GRALGVPAAMTELKRTMSAGITESHCLTLDEVARHAASGS---------LQDYLLPVDRA 236 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVR----TSGAPLEGLVRVTEGENGKFIGMGEIDDEGR- 302 P + G + + +R+ E +F+G+ +++ + Sbjct: 237 VQHLPAHTVAAEKVKAALQGQRLSPSVVSPAVKRGETLRLYSPEQ-QFLGIFRVEEGTKA 295 Query: 303 VAPRRLVVEY 312 V ++ + Sbjct: 296 VKAVKVFLPE 305 >UniRef50_Q2Y7W4 tRNA pseudouridine synthase B n=3 Tax=Nitrosomonadaceae RepID=TRUB_NITMU Length = 313 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 128/313 (40%), Positives = 189/313 (60%), Gaps = 22/313 (7%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 R I+GVLLLDK G+SSN ALQ KRI++A++AGHTG LDP+ATG+LPIC GEATKFS Sbjct: 6 KRHISGVLLLDKASGLSSNQALQTAKRIFSAHKAGHTGTLDPMATGLLPICFGEATKFSS 65 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQI-----VEERPVTFSAEQLAAALDTFRGDIEQI 122 LL +DK Y + RLG + T DA+G+I +E + V + E++ A +F G I Q+ Sbjct: 66 ALLGADKTYEAVLRLGYMSTTGDAEGEISIAAGMESQYVDLTREKIEAVRKSFIGVITQV 125 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSA+K++GK +Y +AR G+E+ R+ R IT+++L ++GNE+ + + C GTYIRT Sbjct: 126 PPMYSAIKHRGKPMYTFARAGVEIERQPRAITIHDLSIEAYQGNEMRIRVTCGSGTYIRT 185 Query: 183 IIDDLGEKLGC-GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 + +DLG LGC GA++ LRR A+ + + + TL L + D L Sbjct: 186 LAEDLGHALGCGGAYLTALRRSALGGFDLPQAYTLTGLEAMPPSQR----------DSCL 235 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL-----VRVTEGENGKFIGMGE 296 +P DS P V + +++ G + + E L VR+ + +F+G+GE Sbjct: 236 LPADSLLRSLPPVVVDSAAALSLLQGRAIPGTHPAGESLLPGRQVRLYDKAQ-RFLGLGE 294 Query: 297 IDDEGRVAPRRLV 309 I EG ++P+RL+ Sbjct: 295 ISTEGYISPKRLI 307 >UniRef50_UPI00016C0EBC tRNA pseudouridine synthase B n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0EBC Length = 290 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 165/303 (54%), Gaps = 16/303 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ + K +G +S+D + K + I + GHTG LDP ATG+LPIC+GEATK YL Sbjct: 1 MDGIINIYKEKGFTSHDVVAKARGILRQKKIGHTGTLDPDATGVLPICIGEATKIVPYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D++K Y LG T T DA G++VEE V S EQ+ L TF G EQ P MYSA+K Sbjct: 61 DANKTYEAEVILGAYTTTEDASGEVVEEFSVEVSNEQVLDVLATFVGAYEQTPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELL-FIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G++LYE ARQ I + R +R + + EL + ++ + CSKGTY+RT+ D+G Sbjct: 121 INGQRLYELARQNIVIDRPSRMVEILELEQMSPLKDGRFKIRVVCSKGTYVRTLCTDIGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL CGAH+ L R V ++ +E+ VTL+ L +L + +L+ ++ Sbjct: 181 KLKCGAHMGELTRTRVGEFDIEQSVTLKQLEKLNA-------------EEILISIEKMFE 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 YP V + + + + NGNP+ A RV + FIG+ + E + ++ Sbjct: 228 QYPAVVVDQSYNKFLYNGNPLEVKIAAAGLFFRVYD-YMNHFIGLYKWSGEKLIV-EKMF 285 Query: 310 VEY 312 + Sbjct: 286 YKE 288 >UniRef50_Q4L5X4 tRNA pseudouridine synthase B n=68 Tax=Bacilli RepID=TRUB_STAHJ Length = 305 Score = 307 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 93/311 (29%), Positives = 159/311 (51%), Gaps = 22/311 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L + K +G++S+D + K+++I + GHTG LDP +G+LP+C+G AT+ S Y++D Sbjct: 3 NGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVSGVLPVCIGTATRVSDYVMD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG+ T T D G+++++ V + ++ A L F G IEQ+P MYS+ Sbjct: 63 MGKSYNATITLGESTTTEDQTGEVIDKIDVQANAININEVDAVLKQFEGIIEQVPPMYSS 122 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYEL----LFIRHE-GNELELEIHCSKGTYIRTI 183 +K GKKLYEYAR+G V R R + + + + +E+ C KGTYIRT+ Sbjct: 123 VKVNGKKLYEYARKGETVERPIRKVNIDSIARTSELQFEDGKCHFNIEVKCGKGTYIRTL 182 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D+G++LG AH+ L R+ + ++ +TL+ + +L EQ + L P L P Sbjct: 183 ATDIGKQLGYPAHMSLLTRINSGGFDIKDSITLDQISQLHEQ---------DTLQPHLFP 233 Query: 244 MDSPASDYPVVNLPLTSSV-YFKNGNPVRTSGAP--LEGLVRVTEGENGKFIGMG--EID 298 ++ P + + + NG +E + + E K + + + Sbjct: 234 LEYGLKSLPKIYVSDENIKTRILNGQKFNKKQFNQTIEQQLVFIDSETEKVMAIYIQHPE 293 Query: 299 DEGRVAPRRLV 309 + P+++ Sbjct: 294 KNHEIKPKKVF 304 >UniRef50_C0WBC5 tRNA pseudouridine synthase B n=1 Tax=Acidaminococcus sp. D21 RepID=C0WBC5_9FIRM Length = 288 Score = 306 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 96/301 (31%), Positives = 153/301 (50%), Gaps = 17/301 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ + KP GM+S+D + +++I + GH G LDP+A G+LP+ G+AT+F +Y Sbjct: 1 MDGIFNVLKPPGMTSHDVVGAMRKILQMKKIGHAGTLDPMAAGVLPVFTGQATRFLEYAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR G RTDT D +G+++ E PV +L L +F G+ Q+P MYSA+ Sbjct: 61 HDRKTYRAELTFGFRTDTGDLEGKVLAESPVRDLDLAELKETLQSFVGEGMQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 GKKLY+ ARQGI V RE RPIT+++L + + L E+ CSKGT+IRT+ +D+ + Sbjct: 121 SVGGKKLYKLARQGIVVEREPRPITIHDLSLLTYRKKTLLFEVTCSKGTFIRTLCEDIAK 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL + +L R V + +E TLE +++ + +D Sbjct: 181 KLAMEGTMSFLLRTKVGDFTLENAHTLEEIQQDPYGTA--------------LSLDVVLR 226 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 +P + + G G L V E + IG+ +GR+ P +++ Sbjct: 227 HFPHREVNDIQARRIAQGVATTVRGIEEGQLY-VIERNGHEVIGLARA-KQGRLCPHKII 284 Query: 310 V 310 Sbjct: 285 Y 285 >UniRef50_C2C2D8 tRNA pseudouridine synthase B n=3 Tax=Listeria RepID=C2C2D8_LISGR Length = 312 Score = 306 bits (784), Expect = 8e-82, Method: Composition-based stats. Identities = 98/317 (30%), Positives = 156/317 (49%), Gaps = 20/317 (6%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 + + G++ L K GM+S+D + ++++I + + GHTG LDP G+LPIC+G ATK + Sbjct: 2 EEKGMEGIIPLWKEPGMTSHDCVFRLRKILHTKKVGHTGTLDPDVAGVLPICIGRATKLA 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSM 125 +Y+ K Y +G T T DA G+I+ E+ V SAEQ+ A+ G+I Q+P M Sbjct: 62 EYVTAEGKTYIADVSIGTATTTEDASGEIIAEKAVSEISAEQIEEAIHQLEGEIAQVPPM 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELL------FIRHEGNELELEIHCSKGTY 179 YSA+K G+KLYEYAR G V R R + ++ + I E +EI C KGTY Sbjct: 122 YSAVKVNGRKLYEYARNGETVDRPVRKVQIHAIKRLDAPQSITAEAPTFTIEISCGKGTY 181 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ +GE LG AH+ L+R + E L + +++ +Q Sbjct: 182 IRTLAVMIGEILGYPAHMSALKRTRSGYFETEHCFRLAEIEAMMKAEDQ----------H 231 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVR-TSGAPLEGLVRVTEGENGKFIGMGEID 298 L+P++ ++ P + + NG + A + RV GK + + + Sbjct: 232 FLLPLEKGIAEMPRIEVNAAVHSEILNGKVMPEYLFAAVNNEARVAVFHEGKLVAIYKPH 291 Query: 299 DEG--RVAPRRLVVEYP 313 E P +++ P Sbjct: 292 PEKAACWKPEKVIELRP 308 >UniRef50_B0PH12 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0PH12_9FIRM Length = 300 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 159/305 (52%), Gaps = 16/305 (5%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L +DKP+G +S D + K++ I R GH G LDP+ATG+LP+ G ATK L Sbjct: 6 GILCIDKPEGFTSFDVVAKLRGIARERRVGHAGTLDPMATGVLPLFFGRATKACDILPRQ 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 DKRY +LG TDT D G ++ E+ ++ AA GDI Q P MYSA++ Sbjct: 66 DKRYLASFKLGVTTDTQDITGTVLSEQTPDADEARVRAAAAGLVGDIMQTPPMYSAVRVN 125 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGN--ELELEIHCSKGTYIRTIIDDLGEK 190 G++LYE AR+G+EV R ARP+TVY + F + +++HCSKGTYIRT+I D+G Sbjct: 126 GQRLYELARRGVEVERAARPVTVYSIDFTACDVQANTFTIDVHCSKGTYIRTLIADIGAA 185 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + LRR + + + VT+E ++ + + LL P+++ Sbjct: 186 LGCGAVMTALRRTMAASFTLADCVTIEQAQQAAQDG---------VFGTLLRPVETAFCA 236 Query: 251 YPVVNLPLTSSVYFKNGNPV---RTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P L + F NG + R + V + +F+G+ + +G + ++ Sbjct: 237 LPSAALNEKQTKMFLNGVRLDIGRVACKRTGDTYAVY-AHDRRFLGVAR-ERDGLLCMQK 294 Query: 308 LVVEY 312 L Sbjct: 295 LFTLE 299 >UniRef50_Q18BH7 tRNA pseudouridine synthase B n=8 Tax=Clostridiaceae RepID=TRUB_CLOD6 Length = 301 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 106/312 (33%), Positives = 173/312 (55%), Gaps = 23/312 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N ++ + KP GM+S+D + +V++I N + GHTG LDP A+G+LPIC+G+ATK + +L Sbjct: 1 MNKIISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVIL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + DK Y LG TDT DA G+I+++ FS E + A DT RG+I Q+P +YSAL Sbjct: 61 NKDKSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSAL 120 Query: 130 KYQGKKLYEYARQGI--EVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 K GK++ + R G E+ + R + + ++ + +GN++ + CSKGTY+R+I D+ Sbjct: 121 KVNGKRMCDLVRSGRQSEITLKTRRVNIKDIKILSIKGNKVMFYVECSKGTYVRSICHDI 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 GE LGCGAH+ +L R + K+ ++ +TLE L E + LD L +D Sbjct: 181 GEYLGCGAHMSFLNRTSSGKFDLDNSITLEELELFYEN---------KTLDKYLYDIDYV 231 Query: 248 ASDYPVVNLPLTSSVYFKNG------NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 + V L + Y+ NG ++ + + VRV +N F+G+G++ Sbjct: 232 LDSFNYVVLNPNAIKYYSNGGSIDDKRFLKNNFDKDDEFVRVYSTDN--FLGLGKLSKHN 289 Query: 302 ---RVAPRRLVV 310 V ++ + Sbjct: 290 NTISVKSDKMFI 301 >UniRef50_Q1MZS4 TRNA pseudouridine synthase B n=1 Tax=Bermanella marisrubri RepID=Q1MZS4_9GAMM Length = 327 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 139/320 (43%), Positives = 203/320 (63%), Gaps = 17/320 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R RR+GRDI+G++++DKP GM+SN LQ+VKR+Y A +AGHTGALDP+ATG+LPICLG Sbjct: 1 MGR-RRKGRDISGIIVIDKPSGMTSNGVLQQVKRLYGAAKAGHTGALDPIATGVLPICLG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFSQ LL+SDKRY +LG+ DT+D +G+I++ V + +++ +AL FRG+I Sbjct: 60 EATKFSQRLLESDKRYITKVQLGESRDTADIEGEILDRADVPDLTQDKIESALTQFRGEI 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPR--EARPITVYELLFIRHEGNELELEIHCSKG 177 Q+P MYSALK+QGKKLYE AR G + +AR +++ +L + + LEL++ C+KG Sbjct: 120 TQVPPMYSALKHQGKKLYELARAGEDFDIQSKARQVSILKLELLDFGDDWLELDVTCTKG 179 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIR++ +D+ + LG V LRRL Y + M LE L E+ +++E L Sbjct: 180 TYIRSLAEDVAKALGTLGFVAVLRRLGAGPYHADMMHELEQLVEIKDKSE-----DFSNL 234 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS------GAPLEGLV--RVTEGENG 289 D LLMP + D P+V L L + + G + + G P V R+ + Sbjct: 235 DQLLMPTQTALPDVPLVELTLKQAHDLQFGRAIELNSQQFKAGEPAIAQVQLRLRYAQWD 294 Query: 290 KFIGMGEIDDEGRVAPRRLV 309 +G+GE+ +G +AP+RL+ Sbjct: 295 LLLGIGELSAQGVIAPKRLL 314 >UniRef50_A9IMS8 tRNA pseudouridine synthase B n=3 Tax=Bartonella RepID=TRUB_BART1 Length = 320 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 102/321 (31%), Positives = 163/321 (50%), Gaps = 15/321 (4%) Query: 1 MSRPRRRG-RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R R++ R ++G ++ DKP+GM S +A+ K+K +++A +AGH G LDPLA+G+LPI L Sbjct: 1 MARQRKKKGRPVSGWVVFDKPKGMKSTEAVSKIKWLFHAQKAGHAGTLDPLASGLLPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 GEATK Y++ K YR GQ T D +G+I + + E++ A L + G I Sbjct: 61 GEATKTVPYVMQGKKTYRFHIAWGQERSTDDLEGEITKTSLKRPTQEEILALLPQYTGII 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR-HEGNELELEIHCSKGT 178 Q P +SA+K G + Y+ AR+G + R + + + EI C KGT Sbjct: 121 LQTPPQFSAIKIAGNRAYDLAREGEVIEIPPREVEIETFKLVETPTKEHSVFEITCGKGT 180 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELV-------EQAEQQDI 231 Y+R++ D+G LGC H+ LRR+AV+ + E +VT + L+ + ++ E Sbjct: 181 YVRSLARDMGRDLGCYGHIADLRRIAVAPFCEEDLVTWDELKAAISPNKNTTDENENSFE 240 Query: 232 PAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP---LEGLVRVTEGEN 288 LD LL+ + P L T + G+ + S E V V E Sbjct: 241 KDFLTLDELLIETGAALDCLPHYPLTDTQAQRVMRGHSIPLSAQKTLLDEEEVCVLYKE- 299 Query: 289 GKFIGMGEIDDEGRVAPRRLV 309 + + +G + D+G P+R+ Sbjct: 300 -QLLAIGTL-DKGLFKPKRIF 318 >UniRef50_Q3A4A3 tRNA pseudouridine synthase B n=2 Tax=Desulfuromonadales RepID=TRUB_PELCD Length = 306 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 165/311 (53%), Gaps = 23/311 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L++DKPQGM+S+ + +++R++ + GH G LDPLATG+L + LG+AT+ Q+L+ Sbjct: 1 MNGILIVDKPQGMTSHAVVGRIRRLFGLRKVGHAGTLDPLATGVLVVALGQATRILQFLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +K YR LG+ TDT D++GQIV A+ +A + G +Q+P MYSAL Sbjct: 61 QENKVYRASLVLGKTTDTQDSEGQIVATSDPGHIDAQSVADVCHSMVGSYDQMPPMYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G LY+ ARQG+EV R+ R IT+++L + E + ++HCSKGTY+RTI D+G Sbjct: 121 KKDGVPLYKLARQGVEVSRKPRRITIFDLQLLAVEPPNITFDVHCSKGTYVRTICHDIGV 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCGAH+ LRRL + + V+ VTLE + + + LL+ + Sbjct: 181 KLGCGAHLTALRRLRSAPFDVKEAVTLEAIELMAPEDRP----------ELLLSIAEALR 230 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAP-----LEGLVRVTEGENGKFIGMGEI------D 298 +YP +N+ G P EG + G G + M + Sbjct: 231 EYPSLNVCPEGIKRLGYGIPPTADMIADTIDFEEGTQVLLVGPGGA-LAMATYVPSRARE 289 Query: 299 DEGRVAPRRLV 309 G R+ Sbjct: 290 SRGDFELLRVF 300 >UniRef50_UPI0000E87C37 tRNA pseudouridine synthase B n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C37 Length = 300 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 190/310 (61%), Gaps = 13/310 (4%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +P+R DI+GV+L+DKP G SSN AL K+K I++ +AGHTG LDPLATG+LPICLGEA Sbjct: 2 QPKRIKLDISGVILVDKPLGYSSNQALSKIKWIFSPKKAGHTGTLDPLATGLLPICLGEA 61 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQ 121 TKFS +LL+SDK Y +LG R++T D++G IV+ + +++ L F G EQ Sbjct: 62 TKFSSFLLESDKTYEASIKLGFRSNTGDSEGVIVDLNVQHFPALKEIKETLKQFSGMQEQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 P MYSALK++GK LYEYAR+G E+ R+ R I + L I + N L++ + CSKGTYIR Sbjct: 122 TPPMYSALKFKGKPLYEYARKGEEIERKKRSINIVSLDLIDYSDNVLKITVECSKGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G+KL G ++I LRR A+ VE+ TL+ + ++A D L+ Sbjct: 182 TLASDIGDKLNTGGYLIALRRTAIGSVNVEQAKTLDMIEASDKEAR----------DALI 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 P+D + ++L ++ K+G + G EG+ R+ ++ F+G+G +D G Sbjct: 232 FPIDEFLNYLDDISLVPSAEEAIKDGKTLLFKGM-KEGIYRLY-NKDKFFLGLGTLDRHG 289 Query: 302 RVAPRRLVVE 311 + RRL+ Sbjct: 290 YLKVRRLLAL 299 >UniRef50_C4GBF3 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GBF3_9FIRM Length = 315 Score = 303 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 110/324 (33%), Positives = 170/324 (52%), Gaps = 36/324 (11%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L + K G +S D + K++ I + + GHTG LDP A G+LP+C+G ATK + + Sbjct: 3 SGILNVYKEPGFTSFDVVAKLRGILHIRKIGHTGTLDPAARGVLPVCIGRATKAVNLMAN 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y +LG RTD+ D GQI+E PV+ S +++ + +F G +QIP MYSA K Sbjct: 63 WTKTYIADMQLGIRTDSQDMTGQILERNPVSVSEDEIQREVASFFGPQDQIPPMYSARKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GK+LY YARQGIE+ R A I +Y++ + E + +E+ CSKGTYIRT+ D+G+ L Sbjct: 123 GGKRLYHYARQGIELERRASHIVIYDIQILSMELPHVIMEVTCSKGTYIRTLCSDIGDAL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GCGA + L R+ V + + + L+ ++E L+ +L P+D+ +D Sbjct: 183 GCGASMAALERIRVGDFDSKNALRLDQIQEAAAAGR---------LEDILYPVDAVFADL 233 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE-----------------------N 288 P + LP + KNG P+ EG+ + EGE + Sbjct: 234 PALKLPEGLTKAGKNGAPI---AEKTEGITCLYEGEKQSRTGSDWRKAGLGLAFRVYLSD 290 Query: 289 GKFIGMGEIDDEGRVAPRRLVVEY 312 G F+G+ +EG + + E Sbjct: 291 GVFLGIYVRCEEG-LRLKNFFYEE 313 >UniRef50_A5CXX8 tRNA pseudouridine synthase B n=3 Tax=Bacteria RepID=A5CXX8_VESOH Length = 302 Score = 303 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 135/312 (43%), Positives = 198/312 (63%), Gaps = 12/312 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R +GR ING++LLDK G+SSN ALQKVKR++ A +AGHTGALD A+G+LPICLG Sbjct: 1 MLRRNPKGRSINGIVLLDKDIGLSSNAALQKVKRLFFAKKAGHTGALDFSASGILPICLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 +ATK +Q+LL+ DKRY V +LGQ +DT D +G I++ +P S ++A +F+G+I Sbjct: 61 QATKIAQFLLEDDKRYFVRGKLGQISDTGDCEGSIIKTQPFEHLSDSEIAKVTASFKGNI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 QIP MYSALK G+ LY+ AR+GIEV RE+R +T+Y+++++ ++ L LE+ CSKGTY Sbjct: 121 FQIPPMYSALKRDGQPLYKLARKGIEVERESRLVTIYKIIYLGYKNGILSLEVTCSKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+I+D+GEKL CGAHVI LRR + + + +T L L + LD Sbjct: 181 IRTLIEDIGEKLSCGAHVIELRRTGFAHIDIRQTLTFSELEILASN-------DYQALDE 233 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV-TEGENGKFIGMGEID 298 ++ + V L S+ K G ++T +GL++V E +F+G+G+ Sbjct: 234 KILASEDMLLGLEDVYLSKVQSLDIKFGREIQTD---KQGLLKVKLFNEKKQFLGIGQCQ 290 Query: 299 DEGRVAPRRLVV 310 G + P++L + Sbjct: 291 GNGIILPKKLFI 302 >UniRef50_B0NZN2 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NZN2_9CLOT Length = 299 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 151/306 (49%), Gaps = 16/306 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L + K + +S+D + K++ I + GHTG LDP A G+LP+CLG+ TK L Sbjct: 3 NGLLNIYKEKDFTSHDVVAKLRGILRQKKIGHTGTLDPNAEGVLPVCLGKGTKLCDMLTG 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K+Y+V + TDT D G + + + + +F G+ +Q+P MYSA K Sbjct: 63 TKKQYKVSFVFEKETDTEDIWGTVTKTHEPLKQDAPIKDTILSFVGEYDQVPPMYSAKKI 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GKKLYE AR+G + R+ I +Y++ I E+ + + CSKGTYIR++ D+G KL Sbjct: 123 NGKKLYELAREGKIIERKPERIRIYDISDIEISYPEVTMTVTCSKGTYIRSLCRDIGHKL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GA + L R S + +E TL + E V+ + ++ ++P++ Y Sbjct: 183 QNGACMTKLVRTRSSGFQLEYAHTLSEIEEAVKTGK---------IEEWIIPIEKVFLKY 233 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGA-----PLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 + NGNP++ +RV + E+ +FIG+ + P Sbjct: 234 QKGTVKKDYDKVLFNGNPLKKEMFYEIDLDTTKKLRVYD-ESEQFIGIYYW-KKNMFFPD 291 Query: 307 RLVVEY 312 ++ + Sbjct: 292 KIFYDN 297 >UniRef50_A7NAR1 tRNA pseudouridine synthase B n=19 Tax=Francisella RepID=TRUB_FRATF Length = 302 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 115/307 (37%), Positives = 179/307 (58%), Gaps = 16/307 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 ++ ++NGV++++K + +SSN LQ++K ++NA +AGHTG LDP+ATG+LPIC G ATK Sbjct: 2 KKNRLNLNGVVVINKAKDISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATK 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQI 122 +QYLLD+DK Y RLG TD+ DA+G+I+ + SAE L L F GD+ QI Sbjct: 62 IAQYLLDADKEYIATIRLGIETDSGDAEGEIIAKSINIPELSAEYLEIVLAKFSGDVVQI 121 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALKY G+ LY+ AR+G V ++R I +YEL + + L++ + CSKGTYIR+ Sbjct: 122 PPMYSALKYNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRS 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+G+ LGCG H+I L+R + + LE L++L + + + Sbjct: 182 LAIDIGKTLGCGGHLIALQRTQSGPFKLSEAFRLEQLKDLSFEQKI----------ASIT 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 ++S D P+ +L + L+G VR+ + E KF+ + E D+G+ Sbjct: 232 NIESVFIDKPIYSLLEEEKNDLYK-RGLFADKPHLDGTVRIYDVE--KFVAIAEF-DKGK 287 Query: 303 VAPRRLV 309 + ++ Sbjct: 288 LINKKFF 294 >UniRef50_C6MD69 tRNA pseudouridine synthase B n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MD69_9PROT Length = 319 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 125/315 (39%), Positives = 180/315 (57%), Gaps = 19/315 (6%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + R +I+GVLLLDKP G+SSN ALQ K+++ A + GHTG LDP+ATG+L IC GEATK Sbjct: 3 KSRKLNISGVLLLDKPYGVSSNKALQTAKQLFLAAKCGHTGTLDPMATGLLAICFGEATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQI--VEERPVTFSAEQLAAALDTFRGDIEQI 122 FS LL ++K Y +LG + T DA+G I V + + AL F G I+Q+ Sbjct: 63 FSSVLLGANKTYEATLKLGFMSTTGDAEGIISPVAATVQNPTLGECQQALSQFIGKIKQM 122 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P M+SALK+ GK LY YAR+G + R+AR ITVY++ NEL+L I C GTYIR Sbjct: 123 PPMFSALKHHGKPLYCYARKGEIIERQAREITVYDIQIQSLHCNELQLSIQCGTGTYIRV 182 Query: 183 IIDDLGEKLGC-GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 + +D+G+ LGC GA++ LRR A+ ++ + + TL L + D L Sbjct: 183 LAEDIGKALGCGGAYLTGLRRTAIDRFNLSQAYTLSALENMSASER----------DNSL 232 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS-----GAPLEGLVRVTEGENGKFIGMGE 296 +P+D DYP + L S+++ + G + VR+ E +F+G+GE Sbjct: 233 LPVDHLLQDYPSITLDRLSALHIQQGRNILCPPGRHGMIKNGKQVRLYT-EKNQFLGLGE 291 Query: 297 IDDEGRVAPRRLVVE 311 I E +A +RL+ + Sbjct: 292 ITIEQTIAVKRLLSD 306 >UniRef50_A1AMM4 tRNA pseudouridine synthase B n=2 Tax=Desulfuromonadales RepID=A1AMM4_PELPD Length = 304 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 102/312 (32%), Positives = 157/312 (50%), Gaps = 20/312 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+G ++DKP G+SS+D + +V+RI R GHTG LDP ATG+LP+ + +ATK +L Sbjct: 2 ISGFFVIDKPAGISSHDVVSRVRRILGTRRVGHTGTLDPFATGVLPVAVNDATKVIPFLD 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y+ + RLG TDT D G+I+ E + S E+ L F G I Q+P M+SA+ Sbjct: 62 EGVKCYQALLRLGVVTDTLDMTGRILAEGDYSSVSRERFLELLTRFCGVISQVPPMFSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G+ LY+ ARQGIEV R AR + ++ L + E L + CS+GTY+R++ DDLG Sbjct: 122 KRDGQPLYKLARQGIEVERRARQVEIHSLELLSFEPPLACLRVSCSRGTYVRSLADDLGA 181 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LGCGA + LRR+A + + +TL L + E D L + + + Sbjct: 182 ELGCGASLQELRRIASGPFHLSSAITLATLEQAKEGGMS---------DALCLDPYAALA 232 Query: 250 DYPVVNLPLTSSVYFKNGN------PVRTSGAPLEGLVRVTEGENGKFIGMGEID----D 299 P + L ++G + ++ NG + I+ Sbjct: 233 HLPDIPLSDAGLAKVRHGRSPEWGETLLSAPCEGTEAGLARLSRNGSLAAVARIEPLPYG 292 Query: 300 EGRVAPRRLVVE 311 R+ +R+ Sbjct: 293 GSRLVLKRVFCN 304 >UniRef50_Q98BI6 tRNA pseudouridine synthase B n=2 Tax=Mesorhizobium RepID=TRUB_RHILO Length = 325 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 107/325 (32%), Positives = 163/325 (50%), Gaps = 16/325 (4%) Query: 1 MSRP-RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M R +++GR ++G ++LDKP GM S +A+ K+K ++ A +AGH G LDPLA+GMLPI L Sbjct: 1 MGRRGKKKGRPVSGWVVLDKPVGMGSTEAVSKIKWLFQAEKAGHAGTLDPLASGMLPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 GEATK Y+ D K YR GQ T D +G + + + + ++ A L + G I Sbjct: 61 GEATKTVPYVQDGAKIYRFTVAWGQERSTDDLEGPVTKSSDLRPAEAEVKALLPKYTGVI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q P +SA+K G++ Y+ AR+G V AR I + L I H + E+ C KGTY Sbjct: 121 MQTPPQFSAIKIAGERAYDLAREGETVDIPAREIEIGRLDIIEHHADHTVFEVECGKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIP------- 232 +R++ D+G LGC H+ LRR+ V + E VT+ L A+ +D P Sbjct: 181 VRSLARDMGRDLGCFGHISDLRRVEVEPFTSEDFVTIAELEAARFGAQGEDKPEPADDAD 240 Query: 233 ------AAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTE 285 +D LL+ + P + + ++ + GNPV G Sbjct: 241 AIDVPVDFGAIDALLVDTSAALDCLPQIAISDDAATKIRLGNPVIIRGRDAPVEAEEACA 300 Query: 286 GENGKFIGMGEIDDEGRVAPRRLVV 310 GK + +G I ++G P+R+ Sbjct: 301 TARGKLVAIGAI-EQGMFKPKRVFA 324 >UniRef50_B9YSP0 tRNA pseudouridine synthase B n=3 Tax=Nostocaceae RepID=B9YSP0_ANAAZ Length = 309 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 105/301 (34%), Positives = 153/301 (50%), Gaps = 20/301 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L L+KP G +S+D + +V+++ R GH G LDP ATG+L I LG+AT+ QYL Sbjct: 21 GFLNLNKPYGWTSHDCVARVRKLLRLKRVGHAGTLDPAATGILLIALGKATRLLQYLPGE 80 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y+ RLG RT T D +G+++ +P S + AL F G IEQIP YSA++ Sbjct: 81 -KAYQATVRLGVRTTTDDLEGEVITSQPCAGLSLADIKTALSQFIGKIEQIPPSYSAIQV 139 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDDLG 188 G++LY+ AR+G V R + V + + + EL+L + CS GTYIR I DLG Sbjct: 140 DGQRLYDLARKGEMVLAPTRTVEVLNIEVLDWRDGDFPELDLALACSAGTYIRAIARDLG 199 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 L G + L R S + ++ VTL L ++ Q +P D+ Sbjct: 200 IVLNTGGTLAALIRTESSSFCLQDSVTLTDLETQLQTGTFQP-----------IPADAAL 248 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 P VN+ T + + G V L GLVRV E +F+G+ +I D + P+ + Sbjct: 249 QTLPSVNISGTFAKKWCQGQQVPLD-IDLLGLVRVY--EEARFLGIAQIQDH-ILIPQMV 304 Query: 309 V 309 Sbjct: 305 F 305 >UniRef50_A5VJE2 tRNA pseudouridine synthase B n=18 Tax=Lactobacillus RepID=TRUB_LACRD Length = 301 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 95/309 (30%), Positives = 155/309 (50%), Gaps = 19/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ L K +GM+S + ++++I + GH+G LDP G+LPIC+G ATK YL+ Sbjct: 1 MDGIIPLYKERGMTSFACVSRLRQILKTKKIGHSGTLDPGVAGVLPICVGNATKVVDYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 S K+Y+ +G T T D DG +EE+ V ++ +A+++ G I QIP MYSA Sbjct: 61 QSGKQYQGELLIGFATTTQDLDGDKIEEKVVADEIPTSEILSAMNSLTGTIIQIPPMYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFI------RHEGNELELEIHCSKGTYIRT 182 +K GKKLYEYAR G V R R +T+ + + +++ + + CSKGTYIRT Sbjct: 121 VKVNGKKLYEYARAGETVERPKRQVTISKFELLSSKYDKKNKQQRIRFNVECSKGTYIRT 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 ++ DL KLG + L RL + +++ ++L+ +R+ V L L Sbjct: 181 LVVDLARKLGYPGVMSLLTRLKSGGFTLDQTLSLDDVRDAVATQ---------TLQQYLY 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID-DEG 301 P+D DYP + + + +NG + S V +G+ + D Sbjct: 232 PLDYALKDYPQLTIQVAQWKKVQNGGWLSPSELNTSEKEIVLSF-DGQVKALYHFDPKNK 290 Query: 302 RVAPRRLVV 310 P ++ Sbjct: 291 MYKPTKMFA 299 >UniRef50_A7VT62 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A7VT62_9CLOT Length = 297 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 111/307 (36%), Positives = 174/307 (56%), Gaps = 18/307 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++++DKP +S D + ++ ++ + GHTG LDP+ATG+LPI +G ATK Sbjct: 1 MNGIIVIDKPPRFTSFDVVAVMRGLFGTKKVGHTGTLDPMATGVLPILIGSATKAQDLTP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DS K Y RLG TDT D+ G + E PVT + L +AL FRG+I Q+P MYSA++ Sbjct: 61 DSGKEYVAGFRLGVVTDTEDSTGTVKETFPVTADEKALESALSHFRGEILQVPPMYSAIQ 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLG 188 G +LY+ AR+GIEV REARP+T++EL + + E E + + CSKGTY+RT+ DLG Sbjct: 121 KNGVRLYDLARKGIEVEREARPVTIHELELLEYRQETGEGSIRVRCSKGTYVRTLCADLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 ++LGCG + LRR A Y ++ + L+ + + A +L+ L P+DS Sbjct: 181 KRLGCGGIMTSLRRTAACGYTIKDSIPLDE---------AKSLKAEGVLEQRLRPVDSLF 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTS-----GAPLEGLVRVTEGENGKFIGMGEI-DDEGR 302 +Y + + + F+NG + +RV G +G F+G+G + ++ Sbjct: 232 LEYRPLKVTGPQAKRFQNGGALALERTGVKKEADGANIRVY-GPDGIFLGLGRVHREKNE 290 Query: 303 VAPRRLV 309 ++ +L Sbjct: 291 LSILKLF 297 >UniRef50_Q2RJM2 tRNA pseudouridine synthase B n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=TRUB_MOOTA Length = 305 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 101/312 (32%), Positives = 163/312 (52%), Gaps = 26/312 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G + + KP G++S+D +Q ++R+ R GH G LDPLA G+LP+ +G AT+ +YL Sbjct: 4 GFVNVLKPPGLTSHDVVQNLRRLLKVKRIGHGGTLDPLAAGVLPVAVGTATRLLEYLQGG 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK YR LG +TDT D G+++ +P + + L AA F G I Q+P M SA+ Y Sbjct: 64 DKAYRAEFILGLKTDTQDLGGRVLARKPCPPFTEKDLQAATRPFTGTIRQVPPMVSAVHY 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHE----GNELELEIHCSKGTYIRTIIDDL 187 QG++LYE AR+G+EV R AR +T++E IR ++I CS+GTYIRT+ D Sbjct: 124 QGRRLYELAREGLEVERPARQVTIHEFRLIRAWPDGPYYRALIDITCSRGTYIRTLGADW 183 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+ LG GA + +L R + + TLE + +++ E L+P + Sbjct: 184 GDYLGVGATLAFLLRTRAGSFRLTDAWTLEEIAGAIDRGE----------RTFLLPPAAG 233 Query: 248 ASDYPVVNLPLTSSVYFKNGNPV------RTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 + PV+ +P + NG + +VR+ GE G+ + + ++ + Sbjct: 234 LAHLPVIIVPGEFIRHVSNGVAIKGDVCRPLPSLREGDIVRLETGE-GQLLALARVEPDT 292 Query: 302 R----VAPRRLV 309 R + P +++ Sbjct: 293 RGSFLLKPHKVL 304 >UniRef50_Q057K1 TRNA pseudouridine 55 synthetase n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057K1_BUCCC Length = 311 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 125/307 (40%), Positives = 196/307 (63%), Gaps = 2/307 (0%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKF 65 + ++ NG+LLLDKP+G+SSN LQ++K+I+ A +AG+TG+LDP+ATGMLPI G ATKF Sbjct: 4 QNNKNYNGILLLDKPKGISSNGILQQIKKIFLAKKAGYTGSLDPMATGMLPILFGNATKF 63 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 S+YL DS K+Y VIA+LG+ T T D G+ ++ + + + + L++F G+I Q+P M Sbjct: 64 SKYLTDSAKKYHVIAKLGETTSTGDLSGKKLKIKSININTNDIYKILNSFIGEIYQVPPM 123 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA+KY G LY+YAR GI VPR+ R + +Y++ FI+ LE + CSKGTYIR++++ Sbjct: 124 FSAIKYNGIPLYKYARLGILVPRKKRKLFIYKINFIQFVNPFLEFTVICSKGTYIRSLVN 183 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR--ELVEQAEQQDIPAAELLDPLLMP 243 D+G KL CG HVI+LRRL + Y ++VTL +L E + +L+ L+P Sbjct: 184 DIGNKLFCGGHVIFLRRLYIKPYNSSKLVTLSNLHFIENKNIEQIHKFYLFNMLNTFLLP 243 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 + S YP++ + + F+ + + GLV+V +N F+G+G+I+ G + Sbjct: 244 VSSFFFKYPIIKILHSDINNFQKKIKIALNFFSTIGLVQVITKKNNIFLGIGKINKFGIL 303 Query: 304 APRRLVV 310 P+ ++ Sbjct: 304 TPKCVLC 310 >UniRef50_A8VS66 Pseudouridine synthase-like protein n=2 Tax=Bacillus RepID=A8VS66_9BACI Length = 317 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 103/321 (32%), Positives = 154/321 (47%), Gaps = 22/321 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M + G+L L KP+GM+S A++K I +AGHTG LDP G+LPIC+G Sbjct: 1 MQKEAIMTNSKAGILPLWKPRGMTSFQAVRKAGGILKTKKAGHTGTLDPDVDGVLPICVG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGD 118 ATK +YL ++K Y +G T+T DA G+ VE R F+ +++ L G+ Sbjct: 61 RATKIVEYLTAAEKVYSGEVTIGWSTETEDASGETVETRMPEEAFTEQEVDDMLVQLTGE 120 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE------LELEI 172 +QIP MYSA+K GK+LYEYAR+G+ V R R ITV+ L Sbjct: 121 QKQIPPMYSAVKVNGKRLYEYAREGVSVTRPVRTITVHSLERTSPVYQHDNGSVSFTFTC 180 Query: 173 HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIP 232 HCSKGTYIRT+ +GEKLG AH+ L R A + E VT E + + ++ Sbjct: 181 HCSKGTYIRTLAVTMGEKLGYPAHMSRLTRDASGSFSKEDCVTFEDMEKYADEQP----- 235 Query: 233 AAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG--LVRVTEGENGK 290 + +L+P++ P + + G + + V +G+ Sbjct: 236 -----EHILLPIEHAFEHVPSLTVEDDDLTRILQGGILPLPKQMDDPDIPFFVIFDPDGR 290 Query: 291 FIGMGEID--DEGRVAPRRLV 309 I + + D G + P +++ Sbjct: 291 LIALYKKDPKRHGMMRPEKMI 311 >UniRef50_C7H6A8 tRNA pseudouridine synthase B n=2 Tax=Faecalibacterium prausnitzii RepID=C7H6A8_9FIRM Length = 295 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 162/303 (53%), Gaps = 11/303 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G+L++DKP +S D + K++ I + GH+G LDP+ATG+LP+ G A+K L Sbjct: 2 MQGILIVDKPTDWTSFDVIAKLRGILGTRKLGHSGTLDPMATGVLPVFCGGASKAVDLQL 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K YR + RLGQRTDT D G ++E PVT ++L A L F G Q P MYSA+K Sbjct: 62 DHTKAYRAVLRLGQRTDTGDVTGTVLETTPVTAGEQELLAVLPQFLGPRMQTPPMYSAVK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTYIRTIIDDLGE 189 G+ LY+ AR+G V R+ARPI + ++ + NE L + CSKGTYIR +++++ E Sbjct: 122 INGQPLYKLAREGKTVERKARPIEILDIRYEGSPAENEYALTVKCSKGTYIRVLLEEIAE 181 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +G + LRR+A Y TLE ++ + E L L++P++S + Sbjct: 182 AMGQKGTMSALRRVAAGVYSEADAHTLEEIQAAKDAG-------PEALQALMLPVESVFA 234 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P++ + NG P + +G RV G+F+G+ + G + +L Sbjct: 235 SLPLLVADERVEQHLYNGCP-TSRYPAADGRYRVRNA-GGQFLGLANVV-NGVLKVEKLF 291 Query: 310 VEY 312 VE Sbjct: 292 VER 294 >UniRef50_Q89AF6 tRNA pseudouridine synthase B n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=TRUB_BUCBP Length = 302 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 149/307 (48%), Positives = 207/307 (67%), Gaps = 9/307 (2%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKF 65 R I+G++L+DKP G+SS++ LQKVK I + GHTG LDPLATGMLP+C G ATKF Sbjct: 3 SEFRSIDGIILIDKPYGLSSHETLQKVKGILKIKKMGHTGTLDPLATGMLPMCCGRATKF 62 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 SQ+L++ KRYRVIA+LGQ+T TSD++GQI+ RP+TF+ QL L +F G I+QIPSM Sbjct: 63 SQFLMNFKKRYRVIAKLGQKTSTSDSEGQIIHVRPITFTNLQLQKVLKSFHGKIKQIPSM 122 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTI 183 YSA+KY G LY+YARQGI + R+ R +YEL + + LEL+I CSKGTYIRT+ Sbjct: 123 YSAIKYHGHALYKYARQGIVISRKVRDAIIYELKVLGYSYKHKYLELDIICSKGTYIRTL 182 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 I+D+GEKL CGAHVI LRRL V Y +M+ ++ L +LV+ +L+ +L+ Sbjct: 183 IEDVGEKLNCGAHVISLRRLQVGNYTSFQMIDIKTLNKLVK-------YNINVLEHILLS 235 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 +D+ S +P VN+ +NG V+T + VR+TEG N +FIG+G+I++ + Sbjct: 236 VDNAISCFPEVNIVPNVIKNLQNGQKVKTHSGFINQFVRITEGINRRFIGIGKINNINEL 295 Query: 304 APRRLVV 310 RL++ Sbjct: 296 YSYRLII 302 >UniRef50_Q01SZ5 tRNA pseudouridine synthase B n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=TRUB_SOLUE Length = 293 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 160/302 (52%), Gaps = 14/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+++DKP+G +S+D + KV+RI + GH G LDP+ATG+LP+ + AT+ +Q+ Sbjct: 1 MDGVIVIDKPEGWTSHDVVNKVRRIAKTKKVGHLGTLDPIATGVLPLVIERATRLAQFYT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 S+K Y + R G T + D G+ E+ V +AEQL AL+ FRG+ Q P SA Sbjct: 61 RSEKIYEGLVRFGWSTSSYDRAGEPTSEKVEVQLTAEQLEHALENFRGEFLQRPPAVSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K +GK+ YE AR+ + V E + VYEL + EGN L HCS GTY+R+I DLG+ Sbjct: 121 KVEGKRSYELARKNMAVELEPVKVHVYELTLLALEGNLARLRAHCSGGTYMRSIAHDLGQ 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LGCGAH+ LRRLA ++ +++ TLE L L + L ++P Sbjct: 181 ALGCGAHLQELRRLASGEFELDQARTLEQLESLAAEDR---------LPDAIVPAGKLLP 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGA---PLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 +P V + ++ +NG S P V+ G + +GE+ P Sbjct: 232 AFPSVFVDEITAAQIRNGRDFPASPFRSQPASKYVKAVT-RTGDLVAIGEVVLPNLYHPT 290 Query: 307 RL 308 + Sbjct: 291 VV 292 >UniRef50_B1YI60 tRNA pseudouridine synthase B n=2 Tax=Exiguobacterium RepID=B1YI60_EXIS2 Length = 302 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 107/296 (36%), Positives = 152/296 (51%), Gaps = 19/296 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GVL LDKP GM+S+D + +++R++ + GHTG LDP TG+LPICLG ATK ++++ D Sbjct: 5 GVLPLDKPAGMTSHDCVFRLRRLFQTKKVGHTGTLDPEVTGVLPICLGRATKLARFITDE 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTF---SAEQLAAALDTFRGDIEQIPSMYSAL 129 KRY +G T T DA G+ V E PVT + +Q+ L G IEQ P YSA+ Sbjct: 65 GKRYVAEVTIGYATTTEDAHGETVRETPVTPASITEQQVDEILQQLTGQIEQTPPYYSAV 124 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR-----HEGNELELEIHCSKGTYIRTII 184 K GKKLYEYAR+GIEV R R + + L ++EI C KGTYIRT+ Sbjct: 125 KVNGKKLYEYARKGIEVERPTRTVQIDTLERTSGLTFADGLCRFQIEIACGKGTYIRTLA 184 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 ++GE+LG AH+ LRR + VTL L E ++P+ Sbjct: 185 VEIGEQLGYAAHMSELRRTSSGMMSETEAVTLATLEA---------CETVEERMQYVLPI 235 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 + +P + + ++ NG + G P+E E G + + +D E Sbjct: 236 EQVIQKWPRLTVNAETAARVLNGAKL--PGIPVEFERFTVYNEEGIPLAIYRLDSE 289 >UniRef50_B3WER2 tRNA pseudouridine synthase B n=9 Tax=Lactobacillus RepID=TRUB_LACCB Length = 306 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 100/312 (32%), Positives = 153/312 (49%), Gaps = 23/312 (7%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 +G +NG+L L KP GM+S DA+ ++I + GH+G LDP G+LP+ +G TK Sbjct: 2 KGTAMNGILPLYKPTGMTSADAVYHARKILGIKKIGHSGTLDPNVDGVLPLAIGAGTKAV 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPS 124 L+ S K Y LG T T D DG++V++ P+ F+A+QL AAL + G+I QIP Sbjct: 62 PQLMASGKVYTGEITLGFATTTEDLDGEVVDKTPLTQPFTADQLDAALTAWTGNITQIPP 121 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-------EGNELELEIHCSKG 177 M+SA+K G++LYEYAR G V R R TV + E+H SKG Sbjct: 122 MFSAVKVNGRRLYEYARAGETVKRPERQATVSQFTRTDEPVFSATDGTQRFRFEVHVSKG 181 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIRT+ D+G+ LG A + L R+ + +++ V++E L+ L Sbjct: 182 TYIRTLAVDVGKTLGVAAVMSQLTRVKSGGFTLKQAVSIEQLKAHAAAG---------TL 232 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI 297 ++ P+D +D P V+L + +G + + RV G + Sbjct: 233 ADVIQPIDIAFADLPQVDLTVEQFEAISHGRFLSLD----QQTPRVRLHFAGVLKAIYRR 288 Query: 298 DDEGRVAPRRLV 309 +D+ P + Sbjct: 289 EDDQ-YRPDLMF 299 >UniRef50_B5YJI4 tRNA pseudouridine synthase B n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJI4_THEYD Length = 302 Score = 297 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 172/304 (56%), Gaps = 5/304 (1%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N V++L+KP+G +S D + KVK+I +AGH G LDP+ATG+L +C+ EATK + +L+ Sbjct: 1 MNAVVVLNKPKGFTSQDTVTKVKKILKVKKAGHAGTLDPMATGILIVCINEATKITPFLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + +K Y A+ G TDT DA+G+IV EQ+ + L+ F G+I QIP MYSA+ Sbjct: 61 ELEKEYVFKAKFGISTDTYDAEGKIVRVVEDFKLEREQVESILEEFTGEIMQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GK L+E AR+G+E+ R+ + + ++ + E + + CSKGTY+R++ D+GE Sbjct: 121 KVGGKPLHELARKGVEIERKPKKVIIHSIKIESFEPPFVTFRVVCSKGTYVRSLCHDIGE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL GAH++ L R + ++ VE + LE L+ L+ + + + +D Sbjct: 181 KLRIGAHIVELTRTRIGEFRVEESIELEELKSLISNNLDSSAFSFQP-KKGIFSIDQALY 239 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTS-GAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 P V + F NGNPV+ G G V+V + GK +G+G + + P R+ Sbjct: 240 FLPSVTMQDYIIPRFLNGNPVKIPSGIVPAGWVKVKDTR-GKILGIG-YGNGVIIKPERI 297 Query: 309 VVEY 312 + E Sbjct: 298 IWEE 301 >UniRef50_A3VQI2 TRNA pseudouridine synthase B n=2 Tax=Alphaproteobacteria RepID=A3VQI2_9PROT Length = 320 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 96/321 (29%), Positives = 157/321 (48%), Gaps = 11/321 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RR G+ ++G L+LDK S +A+ K++ +++A +AGH G LDPLATG+LP+ G Sbjct: 1 MARRRR-GQPLHGWLVLDKAYDYGSTEAVSKLRWLFDAQKAGHAGTLDPLATGVLPVAFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK Y+ D K YR A+ G+ T D +G+++ ++ A L F G+IE Sbjct: 60 EATKTVPYIQDGKKTYRFTAKWGEARSTDDREGEVIATSAHRPERSEIEARLCDFEGNIE 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGTY 179 QIP +SA+K G++ Y+ AR+G+ V +R + + L + +E E KGTY Sbjct: 120 QIPPAFSAVKIDGERAYDLAREGVAVTPPSRMVCIDRLSLLDCPSEDEAVFEAVTGKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR ++ DL + LG HV LRR AV + E VT+E L Sbjct: 180 IRALVRDLAKALGTVGHVAALRRTAVGPFSEEMAVTMEELTGRPSTDRLTVDDRPAEPAQ 239 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVR--------VTEGENGKF 291 L+P+++ +++ + + NG + + GL V E K Sbjct: 240 FLLPVEAALAEHLSATVDRAQAARLLNGGDAILAAPSMTGLRAGRAGDIEPVMAMEGDKP 299 Query: 292 IGMGEIDDEGRVAPRRLVVEY 312 + + ++ ++ P ++ Sbjct: 300 VAICRLEGM-KLRPVKVFAFR 319 >UniRef50_Q5X1C5 tRNA pseudouridine synthase B n=4 Tax=Legionella pneumophila RepID=TRUB_LEGPA Length = 303 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 125/301 (41%), Positives = 182/301 (60%), Gaps = 11/301 (3%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 I+G+LLL+KPQGM+SN ALQK K ++ A +AGHTG+LDPLATGMLP+C GEATK QYL Sbjct: 9 SIDGILLLNKPQGMTSNAALQKAKHLFGAKKAGHTGSLDPLATGMLPLCFGEATKICQYL 68 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 L++DK Y I RLG +T+T+D G+++ T S E++ A L+ ++G I+QIPSM+SA Sbjct: 69 LNADKSYETIGRLGSKTNTADCTGEVIFCIENYTVSHEEMIATLEKYKGKIKQIPSMFSA 128 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK++G LY AR+GIE+ R+AR I + +L + +G L + CSKGTYIR +++D+G Sbjct: 129 LKHKGTPLYRLAREGIEIERKARDIVISQLKLEQFDGECFTLTVSCSKGTYIRNLVEDIG 188 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 + L GAH+ L RL + + RM TL+ L+++ L+P+D Sbjct: 189 DTLKAGAHMTKLHRLYTAGFENNRMYTLDELQDMPLSQRL----------ACLIPIDQAI 238 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 V L + + G + +EG GE +FIG+G+ G + +RL Sbjct: 239 QHLTPVILSDSEVTAIRQGKVISNKTGAVEGEDLRLYGEQSQFIGIGQALIHGDIKAKRL 298 Query: 309 V 309 V Sbjct: 299 V 299 >UniRef50_Q1G9Q1 tRNA pseudouridine synthase B n=27 Tax=Lactobacillus RepID=TRUB_LACDA Length = 298 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 160/307 (52%), Gaps = 24/307 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG++++DK GM+S D + K++R+ + GH G LDP TG+LPI LG+ATK + + + Sbjct: 3 NGIIVIDKAAGMTSGDVVYKLRRLLKQKKIGHAGTLDPEVTGVLPIALGQATKLIELMHE 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TD+ D +G+I+ ER + S + + AA++ G+I Q P +YSA+ Sbjct: 63 RPKAYVGEGMLGLATDSYDLEGKILAERALSQPVSDQAIKAAMEKLIGEIVQQPPIYSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-------LELEIHCSKGTYIRT 182 + GK+LYEYAR+GI V R R + V+ + E+ CSKGTY+R+ Sbjct: 123 RVNGKRLYEYAREGIPVERPKRTVQVFLYDLTAPSQFDPEKGRQTFTYEVECSKGTYVRS 182 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 +++DLGE+LG A + LRR A S Y ++ VTLE L + ++ AE + Sbjct: 183 LVNDLGEELGLPAVMTKLRRTASSGYKLQDAVTLEELADNLDHAE-----------DYIQ 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 P+DS +DY V+L KNG ++ +V N + +G Sbjct: 232 PIDSFFADYQQVDLDAALWQQVKNGAWIKLPLDAD----KVALRYNKTVKAIYRAKGQGL 287 Query: 303 VAPRRLV 309 P ++ Sbjct: 288 YCPDLML 294 >UniRef50_Q2RMR8 tRNA pseudouridine synthase B n=11 Tax=Alphaproteobacteria RepID=TRUB_RHORT Length = 308 Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 105/319 (32%), Positives = 167/319 (52%), Gaps = 23/319 (7%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSR RR G+ I+G L +DKP G++S D + +++R +A + GH G LDPLA+G+LPI G Sbjct: 1 MSRRRR-GQAIHGWLAIDKPVGITSTDVVNRLRRTMDAAKVGHGGTLDPLASGVLPIAFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK Y++D K Y ++ G+ DT D +G++++ V A+ + A L F G+IE Sbjct: 60 EATKTVSYVMDGTKVYHMVVGWGEARDTDDREGKVIDTSDVRPDAQAITAMLARFTGEIE 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL-ELEIHCSKGTY 179 Q+P +YSA+K +G++ Y+ AR V ++R I + +L + + I KG Y Sbjct: 120 QVPPIYSAVKVEGRRSYDLARADQAVELKSRKILIKDLTLLETSTPDFGHFRIVSGKGAY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R++ DL LG HV+ LRRLA + E ++L+ + L A + Sbjct: 180 MRSLARDLALALGTVGHVVALRRLACGPFTAETAISLDMVDALGHDAPHSES-------- 231 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPV---------RTSGAPLEGLVRVTEGENGK 290 L+P+++ +D P V L + G PV +G V+ NGK Sbjct: 232 -LLPIEAALADIPAVPLTEAEARRLSQGQPVSLLHLASRTPLNGLAQGETVQALL--NGK 288 Query: 291 FIGMGEIDDEGRVAPRRLV 309 + + +I EG + P R+V Sbjct: 289 LVALAKIV-EGEIRPLRVV 306 >UniRef50_A8ZZ61 tRNA pseudouridine synthase B n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZ61_DESOH Length = 303 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 152/308 (49%), Gaps = 20/308 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+++++KP G++S + VKR A + GH G LDP ATG+L + AT+ +++ L Sbjct: 6 DGIIVVNKPAGITSAKVVALVKRHTGARKVGHAGTLDPFATGVLVCLINRATRLAEFFLA 65 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV---TFSAEQLAAALDTFRGDIEQIPSMYSA 128 SDK Y + LG TDT D G + T S + + + +F G+ EQ P +SA Sbjct: 66 SDKTYAAVMCLGVETDTQDRTGTVTAVCDTSLQTVSDDAIRRVMTSFEGEGEQRPPAFSA 125 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K+QG LY ARQG+ V + ARP+ + L + E+ CS GTYIRT+ D+G Sbjct: 126 VKHQGVPLYRLARQGVYVEKPARPVVISSLTVQEICWPMVRFEVTCSSGTYIRTLCADMG 185 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCG H+ L R + + R V LEHL +L + + D LL+PM Sbjct: 186 RALGCGGHLYALERTRAGGFDLARAVDLEHLADLCKAGKATD---------LLVPMSEAL 236 Query: 249 SDYPVVNLPLTSSVYFKNGNPVR------TSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 S P P + + G + A EG +VT+ +G+ + + + +E Sbjct: 237 SGMPRFTAPPSLAGRIAAGGQLTAADFAGFPAADAEGYFQVTDA-DGRLLAVVQRHEE-T 294 Query: 303 VAPRRLVV 310 R ++ Sbjct: 295 YRYRCVLA 302 >UniRef50_A5GF89 tRNA pseudouridine synthase B n=7 Tax=Geobacter RepID=TRUB_GEOUR Length = 310 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 152/306 (49%), Gaps = 20/306 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G +++DK GM+S+D + V+RI + GHTG LDP ATG+LP+ LGEATK +L Sbjct: 1 MDGFIVVDKSAGMTSHDVVSAVRRIAGQKKVGHTGTLDPFATGVLPVALGEATKAIPFLD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +S K YR + +LG TDT D G+++ E + L F G + Q+P M+SAL Sbjct: 61 ESIKEYRAVMKLGVATDTQDYTGKVLHESDWSHVTTSALNEICRMFVGKLSQVPPMFSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G LY+ ARQG EVPR+ R I +Y L+ E+ + CS+GTY+RT+ +D+G Sbjct: 121 KQNGVPLYKLARQGAEVPRQPREIEIYSLVIEAVNLPEVAFTVRCSRGTYVRTLANDIGG 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCGAH++ L R + + +TL+ ++ + L+ + S Sbjct: 181 KLGCGAHLLQLHRSLSGPFSINNAITLDDWARRMQDGRAGET---------LVSPFAALS 231 Query: 250 DYPVVNLPLTSSVYFKNG--------NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 L + NG + + LVR++ G G + + + G Sbjct: 232 HLKDFILTGKGAAKVANGVVPALEDFQVLSECELLRDELVRMSFG--GTLLAVAKAGLPG 289 Query: 302 RVAPRR 307 + Sbjct: 290 DWKMLK 295 >UniRef50_B0THR7 tRNA pseudouridine synthase B n=2 Tax=Heliobacteriaceae RepID=TRUB_HELMI Length = 306 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 102/310 (32%), Positives = 158/310 (50%), Gaps = 20/310 (6%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++ G L L KP GM+S+D + K +R+ R GH G LDP A G+LPI +G+AT+ Sbjct: 2 EPLELEGFLNLLKPPGMTSHDVVAKARRLLKEKRIGHLGTLDPDAAGVLPIAIGQATRLI 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSM 125 + + DK YR RLG TD+ DA G+IV+ V S + L FRG I Q P M Sbjct: 62 ELVAGVDKAYRTQLRLGAVTDSQDASGRIVKTGAVPALSRDDWEETLRPFRGQILQTPPM 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE---GNELELEIHCSKGTYIRT 182 SA+ GK+LYEYARQGIEV R ARP+++ + + ++ E+ +++ CS GTYIRT Sbjct: 122 VSAVSVGGKRLYEYARQGIEVERSARPVSISRIEIVHYDPATPEEIVIDVECSAGTYIRT 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+G++LGCG H+ +L R + + +TLE L E + + ++ Sbjct: 182 LCHDIGQRLGCGGHMGWLIRTRSGLFSLRDSLTLESLAEGPPK------------EQIVT 229 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNG--NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 P + + P + + G ++ G +R+ + +G DE Sbjct: 230 PFE-ALAHLPALEIGENRLAALSRGLAQYLQGDGWSEGQWIRMHRRQKLLAVGQAIRKDE 288 Query: 301 GRVA-PRRLV 309 + PR++ Sbjct: 289 QWLCQPRKVF 298 >UniRef50_C0QUQ5 tRNA pseudouridine synthase B n=5 Tax=Aquificales RepID=C0QUQ5_PERMH Length = 293 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 94/305 (30%), Positives = 171/305 (56%), Gaps = 17/305 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYN-----ANRAGHTGALDPLATGMLPICLGEATKF 65 ++G+LL+DKP+ ++SN +QK+K+ + + GHTG LD A+G++ I +G+AT+ Sbjct: 1 MDGILLVDKPENITSNHLVQKIKKHFKQITGKEIKVGHTGTLDYFASGLMVITVGKATRL 60 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 ++Y DK Y LG+ TDT D G+++EE+ +QL + +F+ Q P Sbjct: 61 TEYFQGLDKEYIATGELGKITDTYDRQGRVIEEKECKIDEDQLKDIILSFKKRYLQTPPP 120 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YS+ + +GK+ Y+ A++GI+V + + +T+Y + ++ E +++HCS GTYIR+++ Sbjct: 121 YSSKRIEGKRAYQLAKKGIQVKLKPKEVTIYSIQILKIEMPFFTIKVHCSSGTYIRSLVK 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 ++G+K GCGA+V LRR V + VE + LE L + EQ ++ L+ + Sbjct: 181 EIGDKAGCGAYVKSLRRTKVGIFSVENAIKLEELLRMTEQ----------DIESRLIDIK 230 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + L F G + ++GLV+V + +N +F+G+GEI + + P Sbjct: 231 DALYFFTEILLDPVFDERFIKGQRFKVP-YSIKGLVKVLD-KNKRFLGIGEIKENQILQP 288 Query: 306 RRLVV 310 ++ + Sbjct: 289 VKVFI 293 >UniRef50_A5EWY7 TRNA pseudouridine synthase B n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWY7_DICNV Length = 297 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 115/303 (37%), Positives = 167/303 (55%), Gaps = 16/303 (5%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 RDING+LLL+KP+G+SSN ALQK + ++ A +AGH G LDP A+G+LP+ LGEATKFSQ Sbjct: 2 KRDINGILLLNKPRGISSNSALQKARALFQAKKAGHGGTLDPFASGLLPLFLGEATKFSQ 61 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMY 126 Y+L +DK+Y V R G+ T T D +G+ + P + L F+GD +Q P ++ Sbjct: 62 YMLGADKQYLVGIRFGRETTTDDCNGETLNTLPPPDLLNLDWQSVLAHFQGDYQQTPPIF 121 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SALK GK+ YE AR+GI R I + I + +L I CSKG+YIR D Sbjct: 122 SALKINGKRAYELAREGIIPEIAPRIIHIASCSVIAVNKDYAQLRIRCSKGSYIRAFARD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG L AH L R A + + + L L+ L + D LL+P++ Sbjct: 182 LGRFLNSAAHAETLIREASGHFALNQAHDLSTLKTL----------SLSERDALLLPIEY 231 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 + P + +P + +GN + + GL ++ +G F+G+GE D GR+ P+ Sbjct: 232 ALKNIPPLAIPEDKIRFICHGNDIAITA--TNGLYQL--SADGHFLGIGEARD-GRLYPK 286 Query: 307 RLV 309 RL+ Sbjct: 287 RLL 289 >UniRef50_B8FCY8 tRNA pseudouridine synthase B n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCY8_DESAA Length = 340 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 99/313 (31%), Positives = 153/313 (48%), Gaps = 21/313 (6%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 +G +G++++DKP G++S AL KVK+ +AGHTG LDP ATG+L CLG Sbjct: 3 GMQLEKGAVNHGIIVVDKPSGITSAKALDKVKKTLGVKKAGHTGTLDPFATGVLVCCLGA 62 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI---VEERPVTFSAEQLAAALDTFRGD 118 AT+ +++ L DK Y + LG TDT D G++ +E + +Q+ A F+G+ Sbjct: 63 ATRLARFFLHGDKTYEAVMHLGIETDTQDLTGEVASRMEAEAAQVTPQQIREAAARFQGE 122 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 I+Q P +YSALK+QG LY++AR+G V ++AR IT+Y L CS G Sbjct: 123 IDQFPPVYSALKHQGVPLYKWARKGTPVQKDARRITIYSLDVTDINPPMAGFTARCSGGA 182 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIRT+ D+G +LGCGAH+ LRR S + +E VTL+ L +LV+ + ++ Sbjct: 183 YIRTLCADIGRELGCGAHLHALRRTENSGFSIEEAVTLDQLEDLVQSGK---------IN 233 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVR---------TSGAPLEGLVRVTEGENG 289 + PM P ++ +G + + G Sbjct: 234 EHVAPMAHALRQMPEYTASSQTAKKITHGAALTWLDLGEKTGRQDLQDNPKHIKVASQEG 293 Query: 290 KFIGMGEIDDEGR 302 + + +G Sbjct: 294 DLLAVLTPKTDGI 306 >UniRef50_A5IIS7 tRNA pseudouridine synthase B n=9 Tax=Thermotogaceae RepID=TRUB_THEP1 Length = 309 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 87/315 (27%), Positives = 156/315 (49%), Gaps = 28/315 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L+ KP+G +S+D + +V++ + GH G LDP A G+L I + + T+ ++ D Sbjct: 3 HGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y V RLG T+T D G++VEER + E++ A+ +F G+ +Q+P YSA K+ Sbjct: 63 LKKVYWVKMRLGLITETFDITGEVVEERECNATEEEIREAIFSFVGEYDQVPPAYSAKKH 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 +G++LY+ AR+G + + + ++++ + EG ++ S GTYIR++ D+G KL Sbjct: 123 KGERLYKLAREGKIINLPPKRVKIFKIWDVNVEGRDVSFRAEVSPGTYIRSLCMDIGYKL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GCGA + L R +V Y +E + + A E ++ ++P++ Sbjct: 183 GCGATAVELVRESVGSYTIEESLNVFE-------------AAPEEIENRIIPLEKCLEWL 229 Query: 252 PVVNLPLTSSVYFKNGNPVRT------SGAPLEGLVRVTEGENGKFIGMGEIDDEGRV-- 303 P V + S+ NG+ + G +VRV E G+ + + E + Sbjct: 230 PRVVVHQESTKTILNGSQIHLEMLKEWDGFKKGEVVRVF-NEEGRLLALAEAERNSSFLE 288 Query: 304 ------APRRLVVEY 312 R++ Sbjct: 289 TLRKHERNERVLTLR 303 >UniRef50_Q3BRP7 tRNA pseudouridine synthase B n=20 Tax=Xanthomonadaceae RepID=TRUB_XANC5 Length = 308 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 126/308 (40%), Positives = 175/308 (56%), Gaps = 11/308 (3%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +PR R ++G+LLLDKP G+SSN+ALQ +R+ A + GHTG+LDPLATG+LP+C GEA Sbjct: 2 KPRIVYRPLHGILLLDKPAGLSSNNALQAARRLLRAEKGGHTGSLDPLATGLLPLCFGEA 61 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQ 121 TK + LL S K Y LG TDT DADGQ + ER V S L AAL F G I+Q Sbjct: 62 TKIAGLLLGSAKAYDAEIVLGVTTDTDDADGQPLRERAVPDLSEADLQAALAPFIGRIQQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 +YSALK G+ LY AR+G + R + V + + + L L + C GTYIR Sbjct: 122 QAPIYSALKQGGEPLYAKARRGERIEAPVREVDVQAIDVLGYSAPGLRLRVTCGSGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 ++ DLGE LGCGAH+ LRRL V + +M+TLE L +E LL Sbjct: 182 SLARDLGEVLGCGAHIASLRRLWVEPFRAPQMITLEALSAALEAG--------TEARTLL 233 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 +P+++ + + + L T + F+ G +R + P G +G G+G +D +G Sbjct: 234 LPIEAGLAGFARIVLDQTHAARFRMGQRLRDAAFPPGQ--VAVFGPDGTPSGLGLVDADG 291 Query: 302 RVAPRRLV 309 R++P+RL Sbjct: 292 RLSPQRLF 299 >UniRef50_A4A2R8 TRNA pseudouridine synthase B (Fragment) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2R8_9PLAN Length = 280 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 95/294 (32%), Positives = 145/294 (49%), Gaps = 15/294 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L + KP G +S DA+ +V R + GH G LDPLATG+L C+G T+ +YL Sbjct: 1 MHGILNIHKPPGWTSRDAVNRVNRFVRPAKVGHAGTLDPLATGVLICCVGSGTRLIEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 KRY LG+ +DT D +G + E SA QL A L F G+I Q PS +SA+ Sbjct: 61 QMPKRYVGQFELGKTSDTEDLEGVVTEIVDAPEISAAQLTAILPEFVGEILQRPSTFSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GK+ Y+ ARQG V RPIT+YE+ E E+++ C GTY+R + D+GE Sbjct: 121 KVDGKRAYKLARQGAAVELAPRPITIYEITLRGFEYPRFEIDVLCGGGTYMRALGRDIGE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LG GA + L+R A+ + +E + L+ L E + L P+ + S Sbjct: 181 RLGSGAVMTGLQRTAIGDFRLEDAIPLDELSA-------------ESVAENLSPLSTAVS 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 P + L +R + + + + G+ I + ++ R Sbjct: 228 QAPQITLTPEEVNEMIYARGIRATMESPAAEIAAMD-QQGRLIAILTRREDQRW 280 >UniRef50_C6P7U8 tRNA pseudouridine synthase B n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P7U8_CLOTS Length = 289 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 157/302 (51%), Gaps = 19/302 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP GM+S+D + +++ +N + GH G LDP A G+LPIC+G+ATK SQY++ Sbjct: 1 MDGFLNVLKPPGMTSHDVVSFLRKKFNIKKIGHLGTLDPGAAGVLPICIGKATKLSQYVV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR G TD+ D G I PV + +++ L F+GDI Q+P +YSA Sbjct: 61 SQSKTYRAEITFGFSTDSIDKFGNITNATPVKIFTIDRIQEVLTKFKGDILQVPPIYSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE-GNELELEIHCSKGTYIRTIIDDLG 188 K GKKLYEYAR+G + +A PI +Y++ + ++ + +I CSKGTYIR ++ D+ Sbjct: 121 KINGKKLYEYAREGKSIEIKASPICIYDIKLVSYDIPYRIMFDIKCSKGTYIRALVRDVC 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +KL ++ L R++V + +E TLE ++ + ++P Sbjct: 181 DKLNIAGYMSMLIRISVGPFSLENSYTLEDIKTDKYNMIEMSN---------VLP----- 226 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 +P V L +G P+ + + + FIG+G++D RL Sbjct: 227 --FPDVYLNNFDYKKIIHGRPIENNYLDVNSNFVKLYNPDNLFIGIGKVDSSKIYV-ERL 283 Query: 309 VV 310 +V Sbjct: 284 LV 285 >UniRef50_C9KKC7 tRNA pseudouridine synthase B n=3 Tax=Veillonellaceae RepID=C9KKC7_9FIRM Length = 298 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 151/310 (48%), Gaps = 22/310 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP GMSS+D + V+++ + R GH G LDP A G+LPI +G+A + +YL Sbjct: 2 MDGFLNILKPPGMSSHDVIGAVRKVLHMKRVGHAGTLDPAAAGVLPIAVGQAARLIEYLE 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQIPSMYSA 128 +DK YR G TD+ D G+I EE S + + AL F G I Q P +SA Sbjct: 62 LADKTYRAELTFGFATDSGDDTGEITEEVTDFTMPSQQAIEHALLGFTGKIRQTPPAHSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDD 186 +K GK+ + R+G EV +R +T++ L + + E + ++ CSKGTYIR++ D Sbjct: 122 IKIGGKRACDLLREGKEVEIPSREVTIHALDIVAYHPEEKKILFDVQCSKGTYIRSLCLD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G LG A + +L R V + + +TLE L E E A ++ Sbjct: 182 IGAALGLPATMSFLVRSRVGDFALADALTLEELAEAGESA--------------ILEPAH 227 Query: 247 PASDYPVVNLPLTSSVYFKNGNPV-RTSGAPLEGLVRVTEGENGKFIGMGEIDDE-GRVA 304 S +L F NG P ++RV G+F+G+G D V Sbjct: 228 FLSHLERYDLDPRREKPFCNGLGTGERRHVPETDILRVYSA--GRFLGIGRYDRRSQEVI 285 Query: 305 PRRLVVEYPA 314 P ++V PA Sbjct: 286 PAKVVCREPA 295 >UniRef50_A2RE90 tRNA pseudouridine synthase B n=24 Tax=Streptococcus RepID=TRUB_STRPG Length = 294 Score = 292 bits (749), Expect = 8e-78, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 155/308 (50%), Gaps = 23/308 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ L K GM+S+DA+ K++++ + GH G LDP G+LPI +G+AT+ +Y+ Sbjct: 2 INGIINLKKEAGMTSHDAVFKLRKLLQEKKIGHGGTLDPDVVGVLPIAVGKATRMIEYMT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 ++ K Y LG T T DA G++V + + E + + TF G I Q P MYSA Sbjct: 62 EAGKVYEGQVTLGYSTTTEDASGEVVARSSLPAVLTEELVDQTMTTFLGKITQTPPMYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELL------FIRHEGNELELEIHCSKGTYIRT 182 +K G+KLYEYAR G V R R +T+ F ++ CSKGTY+RT Sbjct: 122 VKVNGRKLYEYARAGESVERPRREVTISLFERTSPLNFTEDGLCRFSFKVACSKGTYVRT 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + DLG LG +H+ +L+R A + +E TL + ++V + E L+ Sbjct: 182 LAVDLGRALGVESHMSFLQRSASAGLTLETAYTLGEIADMVSKQEM----------SFLL 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 P++ +D P + + T G + E L+ GE K I + E D+ Sbjct: 232 PIEYGVADLPKMVIDDTELTEISFGRRLSLP--SQEPLLAAFHGE--KVIAILEKRDQ-E 286 Query: 303 VAPRRLVV 310 P+++++ Sbjct: 287 YKPKKVLI 294 >UniRef50_D1VSB0 tRNA pseudouridine synthase B n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB0_9FIRM Length = 293 Score = 292 bits (749), Expect = 8e-78, Method: Composition-based stats. Identities = 96/294 (32%), Positives = 164/294 (55%), Gaps = 14/294 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+LL++K +G++S+D + V++ N + GH G LDP+ATG+L I +G+ATK S Y++ Sbjct: 1 MDGILLINKKKGITSHDVISIVRKKLNIKKVGHCGTLDPMATGLLIILIGKATKLSDYIM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y +LG TD+ D G I+E + T ++L L +F G+++QIP MYSA+K Sbjct: 61 KNRKTYLAKVKLGLLTDSYDITGNILENQDFTVDKDKLIEVLKSFVGEVKQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHE-GNELELEIHCSKGTYIRTIIDDLGE 189 GKKLYEYAR+G+EV R+ R + +Y + + +E + S GTYIRT+ D+G Sbjct: 121 VNGKKLYEYARKGVEVKRKERLVKIYSMELLDFNGKDEFVINCDVSSGTYIRTLAFDIGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL ++ L+R ++S + + + ++ + + E L+ ++PM+ Sbjct: 181 KLNTYGTLLELQRNSISNFNLNECLNIDDIESI----------DLEELNNRIIPMEKALL 230 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID-DEGR 302 ++ + P NG +T + + R+ KFIG+G ++ D GR Sbjct: 231 NFEKFSYPSDFYDKLLNGIKFQTEKDFEDKIFRLYC--RDKFIGLGRMEVDNGR 282 >UniRef50_D0LZ86 tRNA pseudouridine synthase B n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZ86_HALO1 Length = 371 Score = 292 bits (749), Expect = 9e-78, Method: Composition-based stats. Identities = 109/306 (35%), Positives = 155/306 (50%), Gaps = 25/306 (8%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++GVL++DKP G++S + +VKR R GHTG LDP+ATG+LP+CLGEATK + Sbjct: 28 NKSALHGVLVVDKPAGITSAAVVARVKRHLGVRRVGHTGTLDPMATGVLPLCLGEATKIA 87 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ---LAAALDTFRGDIEQIP 123 YLL DK Y LG TDT DA+GQ+ P +A L L TF G EQ+P Sbjct: 88 GYLLAEDKGYEAELLLGVETDTLDAEGQVTARAPEAAAAVDEAALRRVLATFVGPGEQVP 147 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 M+SALK GK+L+E AR G EV R RP+ ++ELL +HCSKGTY+R++ Sbjct: 148 PMFSALKRGGKRLHELARAGQEVERPPRPVVIHELLLHAFATPRARFSVHCSKGTYVRSL 207 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DD+G LGCGAH+ LRR + + + + L + + E+A L+ Sbjct: 208 ADDIGRALGCGAHLSALRRTRSGAFAIAQAIPLAAIEDDPERAR-----------AALVS 256 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPV----------RTSGAPLEGLVRVTEGENGKFIG 293 + P V +P G P+ + + VR+ +G+ + Sbjct: 257 PAVAVAHLPAVAIPSEGVHDIACGKPMSWQRLSLLAPEAAAIACDAPVRLLL-PSGELVA 315 Query: 294 MGEIDD 299 + E Sbjct: 316 LAERVA 321 >UniRef50_UPI00016C5566 TruB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5566 Length = 286 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 154/299 (51%), Gaps = 18/299 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPICLGEATKFSQYL 69 +NG+L++DKP GM+S DA+ +V+R + + GHTG LDPLATG+L +C+G AT+ + Y+ Sbjct: 1 MNGLLVIDKPGGMTSRDAVNRVQRWFPKKTKIGHTGTLDPLATGVLVVCVGAATRLADYV 60 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y RLG + + DADG + + V + E + A+L F G IEQ+P SA Sbjct: 61 QAMGKTYASRFRLGATSTSDDADGTVTDTPGAVPPTGEAVEASLQRFVGVIEQLPPAVSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK G++ ++ RQG EV RP+ + + ++ ++E+ C KGTYIR+I DLG Sbjct: 121 LKVDGRRAHDLVRQGKEVTLAPRPVRIDAVRLTGYDWPFADVEVDCGKGTYIRSIARDLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCG V LRR V Y E VTL+ + LMPM S Sbjct: 181 AALGCGGMVQTLRRARVGCYLAEDAVTLD--------------LDPGEVGKHLMPMSSAL 226 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGA--PLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 S P V + F+ G V T+G P G V + IG+G + G V P Sbjct: 227 STLPAVRISAEVVTRFRQGQTVATAGEASPQPGEEVVVIDGFQEVIGIGAVLPNGFVKP 285 >UniRef50_C7RGP3 tRNA pseudouridine synthase B n=4 Tax=Anaerococcus RepID=C7RGP3_ANAPD Length = 298 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 104/304 (34%), Positives = 164/304 (53%), Gaps = 16/304 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L +DK +G+SS + V+R N + GHTG LD A+G+LPI +G+AT+ S Y++D Sbjct: 3 SGILNVDKEKGISSARVVSLVRRGLNQKKVGHTGTLDLEASGVLPIVVGKATRVSDYMMD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y + G++TDT DA G++++E T E L L+ ++G+IEQIP MYSALK Sbjct: 63 KDKTYECLMEFGKKTDTLDAAGEVIKESSKTCKREDLEEVLEKYKGEIEQIPPMYSALKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GKKLY+ AR G E+ R+ R + +Y+L I + ++ + CSKGTYIRT++DD+GE L Sbjct: 123 DGKKLYDLARSGKEIERKKRKVKIYDLKLIDFDFPYAKISVTCSKGTYIRTLVDDIGEDL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 C + V LRR+ + + V+ V + E+ + L L +D + Sbjct: 183 ECLSFVKELRRVRIGDFLVDEAVKSSDILEM----------DKDKLISKLERVDKALDKF 232 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMG---EIDDEGRVAPRRL 308 P +L NG ++ ++ VRV +FIG+ E + ++ Sbjct: 233 PRFDLADNLFDKAVNGMTIKIDS-KIDEEVRVY--SRNEFIGLAKSFESRGGYFLKMEKV 289 Query: 309 VVEY 312 + Sbjct: 290 FYDR 293 >UniRef50_C9R8X3 tRNA pseudouridine synthase B n=1 Tax=Ammonifex degensii KC4 RepID=C9R8X3_AMMDK Length = 303 Score = 292 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 92/275 (33%), Positives = 147/275 (53%), Gaps = 14/275 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + GVL + KP GM+S+D + ++R+ + GH G LDP A G++ + +G+AT+ +Q+L+ Sbjct: 1 MIGVLNVLKPPGMTSHDVVDWLRRLTGEKKVGHAGTLDPDACGVMVLLIGKATRAAQFLV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK YR A G RTDT D G+++ + + + E +A L F G I Q P M+SA+ Sbjct: 61 TEDKEYRAEAVFGVRTDTLDLSGRVLACQDASWLTPEAVAEVLPQFTGSIWQKPPMFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG----NELELEIHCSKGTYIRTIID 185 +Y+GK+L+E AR G EV R + VY L ++ + + L +HC KGTY+R+++ Sbjct: 121 RYKGKRLHELARAGQEVEVPPRRVEVYSLQLLKGDWGKRHPRVWLHVHCGKGTYVRSLVA 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DLGE LG GA + +L R V ++ + TLE L L E+ + L L+P+ Sbjct: 181 DLGEALGTGACLGFLLRTRVGRFGIGEAYTLEELARLKEEGK---------LAKALIPLA 231 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 P + + + KNG + + Sbjct: 232 EALGHLPAIEVGEEGAKRIKNGGFLSPAHCLAGKW 266 >UniRef50_D2RKW1 tRNA pseudouridine synthase B n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKW1_ACIFE Length = 297 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 101/300 (33%), Positives = 157/300 (52%), Gaps = 17/300 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ + KP GM+S+D + +++I + + GH G LDPLA G+LP+ G AT+F +Y Sbjct: 1 MDGIFNVLKPPGMTSHDVVGALRKILHMKKIGHGGTLDPLAAGVLPVFTGMATRFLEYAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +K YR G +TDT D +G ++ E PV +AE++ AAL +FRG+ QIP MYSA+ Sbjct: 61 HEEKSYRAELTFGFQTDTGDTEGAVIAESPVRDLTAEEIEAALASFRGEGTQIPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G KLY+ ARQGIEV RE RPIT+YEL + + G L ++ CSKGT+IRT+ +DL Sbjct: 121 SVGGTKLYKLARQGIEVKREPRPITLYELEKVDYTGKTLVFDVTCSKGTFIRTLCEDLAA 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG + +L R + +E TL+ + E ++ + Sbjct: 181 KLGMKGTMSFLLRRRAGVFRLEDAHTLQEIAADPEGCCMG--------------VEPILA 226 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 +P + G G L ++ +G +G+ D GR+ +++ Sbjct: 227 GFPKKIVNALQGRRIAQGVATTLPGLTEGTLYQLWT-RDGVLVGLARAVD-GRLRAHKII 284 >UniRef50_A0LE16 tRNA pseudouridine synthase B n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LE16_MAGSM Length = 319 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 169/316 (53%), Gaps = 17/316 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R RR+G I+G L + K G+SS+ +++V R AN+AGH G LDP + G+LPI LG Sbjct: 1 MGRRRRKGVVIHGWLAIHKEPGLSSSQVVERVIRTTKANKAGHGGTLDPFSEGVLPIALG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK S +L+ DK YR + GQ TD+ D G ++EE+ S +L A L F G+IE Sbjct: 61 EATKTSGMVLNGDKSYRCWLKFGQETDSGDLTGVLLEEQGRVPSEAELRAVLPQFMGEIE 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+P ++SAL+ G++ Y+ AR+G EV +R + + L + E + L++ C KGTYI Sbjct: 121 QVPPVFSALRVDGERAYKRARRGEEVQLASRRVRIDRLELVGFEADTAVLDVACGKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R++ D+ L AH++ L R + + VTLE LRE + L + Sbjct: 181 RSLGVDIARALHSRAHLVRLLRTGTMGFGLNDAVTLEQLREACSEGR---------LQEI 231 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEIDD 299 L P+D D P + + + + G V A G+VR+ + +G+F +GEI Sbjct: 232 LYPVDRVLDDIPALRMTGNAWYRLRQGQEVEVEDAATPAGMVRLQD-PDGQFGLLGEISA 290 Query: 300 EG------RVAPRRLV 309 + R+ P RL Sbjct: 291 QADLQGLRRIKPTRLF 306 >UniRef50_A5D2S3 tRNA pseudouridine synthase B n=3 Tax=Peptococcaceae RepID=TRUB_PELTS Length = 316 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 106/320 (33%), Positives = 171/320 (53%), Gaps = 30/320 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + KP GMSS+D + +++RI+ +AGHTG LDP A G+L +CLG AT+ +++LL Sbjct: 1 MNGIVNVLKPPGMSSHDVVDRIRRIFGVKKAGHTGTLDPGAAGVLVVCLGVATRLARFLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE-QLAAALDTFRGDIEQIPSMYSAL 129 DK YRV G T T D+ G+I ++R +F E + L F G++ Q+P M SA+ Sbjct: 61 GEDKEYRVEITFGMSTSTGDSYGEITDQRDASFLKEHDIIRVLPEFTGEVRQVPPMTSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE-----GNELELEIHCSKGTYIRTII 184 K++GKKLYE AR+G+ V R+ R + + L FIR + + CSKGTY+R++ Sbjct: 121 KWRGKKLYELAREGLVVERQERAVYIKSLEFIRGSGWGTPSPRALMHLSCSKGTYVRSLC 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+G +LGCGAH+ +L R + + VTLE L+ + +L+ ++ M Sbjct: 181 HDMGSRLGCGAHMSFLVRTRAGPFKIADSVTLEELQAAASKG---------VLERKIIEM 231 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSG-------APLEGLVRVTEGENGKFIGMGEI 297 D S+YP V + ++ G+ + G LVR+ G +G + + E Sbjct: 232 DRAVSEYPEVIVKSSAVKAVAAGSKLYIPGVARMPLDLDCGKLVRL-TGPDG-LLAIAEA 289 Query: 298 ------DDEGRVAPRRLVVE 311 ++ P ++ Sbjct: 290 GREPFDKEKLFFKPVCVLAR 309 >UniRef50_Q38W87 tRNA pseudouridine synthase B n=3 Tax=Lactobacillaceae RepID=TRUB_LACSS Length = 305 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 98/313 (31%), Positives = 148/313 (47%), Gaps = 23/313 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ L K +GM+SND + KV+RI + + GH+G LDP G+LPIC+G+ATK L+ Sbjct: 1 MDGIIPLYKERGMTSNDCVFKVRRILHMKKVGHSGTLDPNVDGVLPICIGQATKVVDQLV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 S K Y LG T T D DG++VEE+ + S E++ L +F G+ QIP M+SA Sbjct: 61 HSGKVYTGEITLGLSTTTEDLDGEVVEEQQLTEPISTEKIKETLASFLGESIQIPPMFSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-------EGNELELEIHCSKGTYIR 181 +K G++LY+YAR G V R R IT+ + CSKGTYIR Sbjct: 121 VKVNGRRLYDYARAGDPVERPQRKITITQFDLQGEPEFDAKTGRQTFRFIAGCSKGTYIR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D G KLG A + L RL + VTL L E + + L +L Sbjct: 181 TLAVDFGRKLGLPAVMSDLTRLKSGGIQIGSCVTLAQLAEAADNGQ---------LADIL 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI--DD 299 +P+D + + L NG + E + G + ++ Sbjct: 232 IPLDHVFEENVKIALDDDQWAKILNGVFLTFPEQTEE---ILALTYEGHIKALYQVANAK 288 Query: 300 EGRVAPRRLVVEY 312 + P ++ ++ Sbjct: 289 QHLYRPYKMYLQN 301 >UniRef50_C8NA97 tRNA pseudouridine synthase B n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA97_9GAMM Length = 298 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 122/315 (38%), Positives = 168/315 (53%), Gaps = 18/315 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M + ++ I+GVLLLDKP G+SSN ALQ+ + +Y A +AGH G LDP ATG+LP+ G Sbjct: 1 MGKRKK----IDGVLLLDKPAGISSNQALQQARWLYQAEKAGHGGTLDPFATGLLPVLFG 56 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDI 119 EA+KF +Y LD DK Y G TDT D G ++ E P A A F G Sbjct: 57 EASKFGRYFLDGDKAYEATLAFGTETDTGDLSGAVIREAAPPPLDAVDWVALCAGFSGVQ 116 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q+P +YSALK G++ Y AR+G EAR + ++EL F+ +G+ + CSKGTY Sbjct: 117 RQVPPVYSALKVGGERAYALARRGELPQLEAREVVIHELRFLGMDGDGARFFVRCSKGTY 176 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR+++ D+ LG H LRR+AV+ M L LR E L Sbjct: 177 IRSLLRDMAAALGSAGHTHALRRVAVAGLTA--MTPLATLRAWQEAG------DMTALQA 228 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 LL+P+D + P V +P + +NGN + + G V + +G +F G+GE D Sbjct: 229 LLLPLDCCVAHLPRVVVPPEKLRFIRNGNDIACAAPH--GEVALYDG--ARFFGVGEARD 284 Query: 300 EGRVAPRRLVVEYPA 314 GRV P+RL PA Sbjct: 285 -GRVFPQRLCALPPA 298 >UniRef50_Q67P83 tRNA pseudouridine synthase B n=3 Tax=Bacteria RepID=TRUB_SYMTH Length = 299 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 152/315 (48%), Gaps = 23/315 (7%) Query: 1 MSR-PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R +++GVL L KP GM+S+D + V+R +AGHTG LDP G+LP+C+ Sbjct: 1 MARAQNEAASEVDGVLNLLKPPGMTSHDVVAFVRRALGVKKAGHTGTLDPGVAGVLPVCV 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGD 118 G AT+ ++Y+ SDK YR G TDT D G++V E + +A AL F G Sbjct: 61 GRATRLAEYIAGSDKAYRAEITFGVATDTQDGFGEVVAEADASHLTRGDVAYALTRFHGP 120 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---NELELEIHCS 175 IEQ+P M SA+K GK+LYE AR+G+EV RE R + ++ L + +++ CS Sbjct: 121 IEQVPPMVSAVKVGGKRLYELARKGVEVEREPRRVFIHRLQLLDFRPGPRPVAYIDVVCS 180 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 KGTY+RT+ DLG L GAH+ YL R + + + TLE L Sbjct: 181 KGTYVRTLAHDLGRFLQVGAHLSYLVRTRSGPFVLAQAATLEELAAG------------- 227 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG-LVRVTEGENGKFIGM 294 L+P + D P V + ++ +G +G V V Sbjct: 228 --KARLLPPAAALGDMPRVTVSGRAAARVLHGVAPAVRVEHPDGTTVAVVAANGALLA-- 283 Query: 295 GEIDDEGRVAPRRLV 309 D G + R++ Sbjct: 284 LAEADGGGLRLRKVF 298 >UniRef50_A6C3H8 tRNA pseudouridine synthase B n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C3H8_9PLAN Length = 310 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 145/320 (45%), Gaps = 19/320 (5%) Query: 1 MSRPRRRG-RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 MS + I+G+L ++KPQ ++S + +V+++ R GH G LDPLATG+L +C Sbjct: 1 MSSKKSGADLKISGLLNINKPQDITSRQVVDQVQKLIKPARVGHAGTLDPLATGVLVLCT 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGD 118 G T+ + + K Y LG+R+DT D G+I E + +L L F G Sbjct: 61 GSNTRLIRLVQQQPKEYIGEFLLGKRSDTDDITGEISETADCRQVTLPELETCLPAFEGR 120 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 I+QIP YSA+ G++ Y+ AR+G + R + VYE+ + +L I C GT Sbjct: 121 IQQIPPQYSAVHINGRRAYDLARRGKSFEIQPREVDVYEIELLDFSFPRFQLRIVCGSGT 180 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIR+I DLGE+LG GA + L R + + ++ + L+ + + Sbjct: 181 YIRSIGRDLGEQLGVGATMSALTRTRIGPFTLDSAMELDE------------ELSLGTIA 228 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS----GAPLEGLVRVTEGENGKFIGM 294 + P P + + G ++ A E + + + + Sbjct: 229 DNIQPAILAVEQLPHYHCNERELLSLSQGQKLKCKPEYFPATHEIIEVAVISPQTELVAI 288 Query: 295 GEIDDE-GRVAPRRLVVEYP 313 + + E +++PR++ P Sbjct: 289 ADWEPEAHQLSPRQVFHPAP 308 >UniRef50_B2A3A0 tRNA pseudouridine synthase B n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3A0_NATTJ Length = 299 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 164/310 (52%), Gaps = 21/310 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L + K G +S+D +Q +++ Y + GH G LDP A G+LP+ LG+AT+FSQY+L Sbjct: 1 MLGFLTVCKTPGYTSHDVVQYLRKNYQVKKVGHLGTLDPGAVGVLPLALGKATRFSQYIL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA-EQLAAALDTFRGDIEQIPSMYSAL 129 DK+YR LG+ TDT DA G+ +E+ V + E L G+I Q+P MYSA+ Sbjct: 61 SQDKKYRFELTLGEATDTLDAQGKTIEKDEVQNTHIENLKNKYQELIGNINQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIID 185 K +GKKLYE AR+G EV R R +T++ L + + ++HCSKGTYIRT+ + Sbjct: 121 KQKGKKLYELAREGKEVERTPRQVTIHSLNLVDIYEHQGKHRFLFDVHCSKGTYIRTLAE 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DL + G ++ +L R A + ++ + + L L L P+D Sbjct: 181 DLAKLSGTVGYMSFLIRTATGIFNLDDAIFPQEL-----------PEQKTDLGIHLFPVD 229 Query: 246 SPASDYPVVNLPL-TSSVYFKNGNPVRTSGAPLEG-LVRVTE---GENGKFIGMGEIDDE 300 P SD P + L FKNGN V T+ G L R+ E + F+G+G+I Sbjct: 230 YPLSDIPSLVLKESQQLKRFKNGNFVNTAVIAESGELYRIYEEDSSGDNLFLGLGKITSS 289 Query: 301 GRVAPRRLVV 310 + P +++ Sbjct: 290 NTLKPEKIIA 299 >UniRef50_B8CW75 tRNA pseudouridine 55 synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW75_HALOH Length = 303 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 165/299 (55%), Gaps = 22/299 (7%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 ++G++ + KP GM+S D + ++++Y+ +AGHTG LDP A+G+LP+CLG+ TK Y Sbjct: 2 SRVDGIISIIKPPGMTSFDVVAWIRKMYSVKKAGHTGTLDPAASGVLPVCLGKGTKIIPY 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMY 126 L D K Y LG +TDT D++GQI+EE + + L + F+G IEQ+P MY Sbjct: 62 LPDEVKGYVAEITLGVKTDTLDSEGQIIEENQKWESITDSHLNKVISDFQGVIEQVPPMY 121 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SA+KY+GK+LYE AR+G ++ RE R + + ++ + + +++L + CS GTYIR+I D Sbjct: 122 SAVKYKGKRLYELAREGKKIKREPRQVEIKKINILDIDLPKVKLFVLCSPGTYIRSIARD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +GEKLGCGA++ +L R + +E TL ++ D LL D Sbjct: 182 IGEKLGCGAYLSFLVRTRSGSFNLENSFTLSEIK--------------FRGDKLLYNFDY 227 Query: 247 PAS-DYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLV----RVTEGENGKFIGMGEIDD 299 P + + +++ S NG P+ S G V +V N F+ + + D Sbjct: 228 PLTNHFTRIDIRRGSRQKVYNGAPLYGSDIAKIYGKVTLRDKVLIYNNNTFLAIYRVSD 286 >UniRef50_A4J5W9 tRNA pseudouridine synthase B n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5W9_DESRM Length = 310 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 97/320 (30%), Positives = 171/320 (53%), Gaps = 31/320 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+ + KP GM+S+D + V+R+ + GHTG LDP A+G+LP+C+G+AT+ ++++ Sbjct: 1 MDGVINILKPPGMTSHDVVFFVRRVTGVKKCGHTGTLDPGASGVLPVCVGKATRLARFVT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 D DK YR LG T + DA G ++ + + ++ L F+G+I+Q P M SA+ Sbjct: 61 DGDKTYRAEITLGIETSSQDAFGNVISRIDASAIKLDDFSSELRKFQGEIKQTPPMASAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR-HEG----NELELEIHCSKGTYIRTII 184 K +GKKLYE R+GI V R +T+Y++ + + + ++ CSKGTY+RT+ Sbjct: 121 KVKGKKLYELEREGIIVDVPTRTVTIYQVNIVDSWDWGTPNPRVLFDVACSKGTYVRTLC 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+G++LGCGA++ +L R V+ + + TLE + L ++ L+ ++PM Sbjct: 181 SDIGKELGCGAYMSFLLRSRVAAFGLHNAYTLEEIAALADK---------SQLESAVIPM 231 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVR-------TSGAPLEGLVRVTEGENGKFIGMGE- 296 P+V + ++ +G + EGLV+V N + +G+ + Sbjct: 232 AKAVQHLPIVEIHPSAQKSVCSGATLYPAGVRVGLEYLKPEGLVQVQL--NHELLGIYKP 289 Query: 297 ---IDDEG---RVAPRRLVV 310 ++D G + P + Sbjct: 290 VLDVNDFGERIILRPEVVFA 309 >UniRef50_C5RBC4 Pseudouridylate synthase n=2 Tax=Lactobacillales RepID=C5RBC4_WEIPA Length = 336 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 90/317 (28%), Positives = 148/317 (46%), Gaps = 21/317 (6%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 + + R ++G++ + K +GM+S+D + K++RI + GH G LDP G+LP+ LG+AT Sbjct: 27 QKSKVRSMDGIIPIYKDKGMTSHDVVFKLRRILKMKKIGHAGTLDPNVDGVLPVALGKAT 86 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGDIEQ 121 K ++L ++ K Y LG T T D DG +++ + FS +++ + T G I Q Sbjct: 87 KTIEFLQETGKIYTGSITLGIATTTEDMDGDVIQTQHLVKPFSNDEINKGMRTLTGHITQ 146 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI-------RHEGNELELEIHC 174 IP MYSA+K G++LY+YAR G V R R +YE + Sbjct: 147 IPPMYSAVKVNGRRLYDYARAGETVERPKREAVIYEFKMTSATTFDEKKGTQTFSFLARV 206 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKGTYIRT+ DLG +L + + L R++ Y + + L+ + + + + Sbjct: 207 SKGTYIRTLAVDLGRQLQVPSVMSQLTRISAGGYDITQAHRLDEIAQRMTEKGS------ 260 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKN--GNPVRTSGAPLEGLVRVTEGENGKFI 292 L LMP+++ + Y V L K+ G P E +V +G+ Sbjct: 261 --LGDWLMPLETAVAQYTHVELNDEQWEKVKHGIGQPASLHEPTTEKIVLTYKGDVKSVF 318 Query: 293 GMGEIDDEGRVAPRRLV 309 D+ + R Sbjct: 319 AW--RPDKNQYRTYRTF 333 >UniRef50_Q1IPJ6 tRNA pseudouridine synthase B n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IPJ6_ACIBL Length = 302 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 154/301 (51%), Gaps = 12/301 (3%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++ VL++DKP G +S+D + +++R+ + AGH G LDP+ATG+LP+ LG T+ SQ+ Sbjct: 2 PLDAVLVIDKPAGWTSHDVVARLRRVLSERSAGHLGTLDPMATGVLPVVLGRYTRLSQFY 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 S+K Y R G T+T DA+G+ V E + V + E + A F G + Q+P +SA Sbjct: 62 NHSEKSYEGEIRFGFATNTYDAEGETVGEAQTVQVALEGVREASREFVGPLSQLPPPFSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE-GNELELEIHCSKGTYIRTIIDDL 187 K G Y+ AR+ +EV + I V++ + + H S GTYIR++ DL Sbjct: 122 KKINGVPAYKLARKNVEVELKPSAIEVFQFEVFEGSAPDRIGFRAHVSSGTYIRSLAHDL 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+KLGCGAH+ LRR V+++ +++ TLE + V + +++ ++P Sbjct: 182 GQKLGCGAHLASLRRTTVAEFTIDQAHTLEAVETAVAKGNPEELFVHP---RRILP---- 234 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P V + Y +NG V LV+V G + + + + P+ Sbjct: 235 --QLPCVTANDETVAYIRNGRAVNLPEFSKAKLVKVFAG-QAEIVCVAQRIAGTLFHPKL 291 Query: 308 L 308 + Sbjct: 292 V 292 >UniRef50_O66922 tRNA pseudouridine synthase B n=2 Tax=Aquificaceae RepID=TRUB_AQUAE Length = 287 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 170/302 (56%), Gaps = 17/302 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G LL+DKP+G++S + +++VK A +AGHTG LDP+ATG+L I + +AT+FSQ+ + Sbjct: 1 MDGALLIDKPKGITSTEVVERVKEKLKARKAGHTGTLDPIATGLLIILINKATRFSQFFI 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K YR + G TDT DA G++VE + ++L L+ FRG+I Q P +SA K Sbjct: 61 GMPKTYRFTVKFGAETDTYDAQGKVVETYEGELNCDKLKEVLNEFRGEILQTPPPFSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN--ELELEIHCSKGTYIRTIIDDLG 188 +G++ YE AR+G +V + ITVY L + E E S G Y+R++ D+G Sbjct: 121 IKGRRAYELARKGKKVELKPVKITVYSLELLSCNPREKEAEFLAEISSGGYVRSLAYDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +KLG G ++ LRRL + + VE V+LE ++E + ++P+D+ Sbjct: 181 KKLGIGGYMKELRRLKIDEISVEEAVSLEEFL------------SSENPEEYVLPVDTLF 228 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 P V L + G + EGLV++ E+ KFIG+GE+ G ++P+RL Sbjct: 229 RVIPEVRLNTFEAGKILQGKRILIKNYDYEGLVKIY--EDSKFIGIGELKG-GVLSPKRL 285 Query: 309 VV 310 +V Sbjct: 286 LV 287 >UniRef50_A6GNL1 tRNA pseudouridine synthase B n=2 Tax=Burkholderiaceae RepID=A6GNL1_9BURK Length = 344 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 124/339 (36%), Positives = 187/339 (55%), Gaps = 36/339 (10%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 + +++ R ++GVLL DK G SSN ALQ VKR+Y A + GHTG LDPLA+G+LP+ GE Sbjct: 7 AETKKQKRALSGVLLFDKSTGFSSNQALQIVKRLYRAEKTGHTGTLDPLASGLLPLMFGE 66 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIV---EERPVTFSAEQLAAALDTFRGD 118 ATKF+ L+D+ K YR RLG ++T DA+G++ + + +++ + F G+ Sbjct: 67 ATKFAADLIDASKTYRTKVRLGFSSNTGDAEGELTKVGNRALESITEDEVKQVCEQFVGE 126 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--------NELEL 170 I+Q+P M+SALK GK LYEYAR+GIE+ R AR + +++L I+ E +EL Sbjct: 127 IQQVPPMFSALKKDGKPLYEYAREGIELDRPARTLLIHQLDVIKVEHNTNHGESSCTIEL 186 Query: 171 EIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD 230 E++CSKGTY+RT+ +D+ + LG ++ LRR A+ VER TLE L+ L E Sbjct: 187 EVNCSKGTYVRTLGEDIAKALGTAGYLTELRRTAIGDLKVERAYTLEALKVLGESE---- 242 Query: 231 IPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS-GAPLEGLVRVT----- 284 + LD +L P+D+ V L + F +G + G VRV Sbjct: 243 -TPFDALDAVLFPVDALLGSLGKVELNNEFARRFSHGQRLPLELADAKPGRVRVYGEAPA 301 Query: 285 -----------EGENGKFIGMGEIDDEGR---VAPRRLV 309 N +F+G G ++ +G+ + P RL+ Sbjct: 302 QDVNTEVSNTAFKGNSRFMGTGILETDGKGALLRPDRLI 340 >UniRef50_Q5FQM1 tRNA pseudouridine synthase B n=9 Tax=Acetobacteraceae RepID=TRUB_GLUOX Length = 333 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 156/322 (48%), Gaps = 18/322 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R R GRDI+G L+LDKP G +S D + K++ ++A +AGH G LDPLA+G+LPI G Sbjct: 1 MGRKR--GRDIDGWLILDKPLGPTSTDMVNKLRWAFDAKKAGHGGTLDPLASGVLPIAFG 58 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 +AT+ Y++D+ KRYR G+ T D +G+++ P + +Q+ A L G++ Sbjct: 59 KATRTIPYIMDATKRYRFTLTFGESRTTDDLEGEVLATSPNRPTDDQIRAVLPALTGNVM 118 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGTY 179 Q+P ++SAL+ G++ Y+ AR G RP + + + + N ++ KG Y Sbjct: 119 QVPPVFSALRVGGERAYDMARAGRPPELPPRPARIDSITLVERPDANTAVFDVQSGKGVY 178 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R++ D+ G H+ LRR + + +T++ + Q + A+ L Sbjct: 179 MRSLARDIALACGTVGHISVLRRTKCGPFDLSHALTIDQIS---LDKSTQTVDNADALPA 235 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGN---------PVRTSGAPLEGLVRVTEGENGK 290 L+ + D P + + G P+ S + L R GE+ Sbjct: 236 PLLDAATALVDIPALAVTDAEGRMLVWGQSIDPADLVHPLPASSQGEDHLWRAMIGEH-- 293 Query: 291 FIGMGEIDDEGRVAPRRLVVEY 312 +G+ + GR+ R++ + Sbjct: 294 VLGLCHVR-HGRLRAARMLENH 314 >UniRef50_Q1WUF2 tRNA pseudouridine synthase B n=28 Tax=Firmicutes RepID=TRUB_LACS1 Length = 302 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 157/309 (50%), Gaps = 20/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L L K +GM+SNDA+ K ++I+ + GH+G LDP G+LPIC+G+ATK YL+ Sbjct: 1 MDGILPLYKERGMTSNDAVIKCRKIFKTRKIGHSGTLDPEVDGVLPICVGKATKVVNYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 DS K Y+ LG T T D +G+++ + + FS E++ L +F GDI Q+P +YSA Sbjct: 61 DSGKVYKGEITLGFATTTEDLEGEVISKVKLSEPFSDEKINEILSSFIGDIIQVPPIYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-------LELEIHCSKGTYIR 181 +K GKKLYEYAR G +V R + + I + + E+ C KGTY+R Sbjct: 121 IKVNGKKLYEYARAGEKVDIPERRVHIEYFKQIFPSKFDKEKGQQTIYFEVGCGKGTYVR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G+KLG A + L RL + + +L L +L L L Sbjct: 181 TLAVDVGKKLGVPAVMSDLTRLKSGGFQIGMAKSLSQLEKLA---------HENKLSESL 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE- 300 P+D D P +L L KNG + + + RV + + + + + E Sbjct: 232 YPIDYAVKDLPRYDLKLEQWRIVKNGGFLSVNTFKED-YDRVNLFYDDRIRCIYQYNKEK 290 Query: 301 GRVAPRRLV 309 R R++ Sbjct: 291 NRYQSERMI 299 >UniRef50_UPI000185BE2E tRNA pseudouridine synthase B n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BE2E Length = 328 Score = 287 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 93/323 (28%), Positives = 159/323 (49%), Gaps = 26/323 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++++DKPQG +S+D + K++RI+ + GH+G LDP+ATG+L + +G T+F ++ Sbjct: 10 SGIVIVDKPQGWTSHDVVGKLRRIFRTKKVGHSGTLDPMATGVLVLGIGRGTRFLPHVHA 69 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K YR RLG T T DA+G+++ E + + E + + F G I Q P+ SA+K Sbjct: 70 DTKSYRATIRLGAATLTDDAEGELLSESSAASVTDEMIREKITDFTGTIMQKPAAVSAVK 129 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH----------EGNELELEIHCSKGTYI 180 G + YE R+G +V ARP+T+ + E ++++E+ CS GT+I Sbjct: 130 IDGVRAYERIRRGEKVDIPARPVTITRYEVLDIRHDSDTSRPGECIDIDVEVDCSAGTFI 189 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + DLG+ LG G H+ LRR A + ++ +T++ L EQ + + AE+ P+ Sbjct: 190 RALARDLGDALGVGGHLTALRRTAAGVFTIDEALTIDELTAKAEQFDTANPEIAEMRRPI 249 Query: 241 ------LMPM---DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKF 291 L+PM ++ + + + G + G P V GK Sbjct: 250 PDRAASLLPMSLDEACLRCFDTREITEQQAADLAQGKWLEPIGKPG---VYAAVSPTGKV 306 Query: 292 IGMGEIDDEGRVAPRRLVVEYPA 314 + + + + V PA Sbjct: 307 PALLTESGK---RAKTVFVVRPA 326 >UniRef50_UPI0001C373A4 tRNA pseudouridine synthase B n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373A4 Length = 297 Score = 287 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 98/300 (32%), Positives = 157/300 (52%), Gaps = 15/300 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L ++KPQ +S D + K++ I R GH G LDP+ATG+LP+ +G ATK + Sbjct: 1 MNGILCVNKPQDFTSFDVVAKLRGILKMKRLGHGGTLDPMATGVLPVFVGNATKAVDIMP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y RLG +DT D G + S +++ A L FRG+I QIP MYSA++ Sbjct: 61 VTLKSYTADFRLGFTSDTQDVWGNAEKVSDKAVSPDEIEAVLPQFRGNIMQIPPMYSAVQ 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--NELELEIHCSKGTYIRTIIDDLG 188 G++LY+ AR+GIEV R+ R ++ L + ++ E LEI CS+GTY+RTII+D+G Sbjct: 121 VNGQRLYDLARKGIEVERQPRETEIHTLNMLSYDPVTREGVLEIECSQGTYVRTIINDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 EKLG G + L R + + + T + +++ ++ L++P++ Sbjct: 181 EKLGVGGIMTGLVRNSACGFALSECHTFDEIQKAADEGRV---------GELILPIERVF 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPV---RTSGAPLEGLVRVTEGENGKFIGMGEID-DEGRVA 304 P + L + ++NG + R + G +G FIG D + G + Sbjct: 232 DTLPKLRLGEAQTRMYRNGVKLDLERIRNIREDADCYAVYGSDGGFIGTALTDRENGILR 291 >UniRef50_C6LME9 tRNA pseudouridine synthase B n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LME9_9FIRM Length = 332 Score = 287 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 106/340 (31%), Positives = 162/340 (47%), Gaps = 51/340 (15%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ + K +G +S+D + K++ I + + GHTG LDP A G+LP+CLG AT+ L Sbjct: 2 INGIVNVYKEKGFTSHDVVAKLRGILHQKKIGHTGTLDPEAEGVLPVCLGNATRLCDMLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK YR + LGQ TDT D G ++ S E + +A+ F G EQ+P MYSALK Sbjct: 62 DKDKTYRAVLLLGQTTDTQDTTGTVLSTCAEIPSEEAVRSAVTGFIGPYEQVPPMYSALK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYE AR+G V R+AR + +Y + + + + + CSKGTYIRT+ D+GE+ Sbjct: 122 VGGKKLYELAREGKTVERQARTVQIYGITIEDIQLPRVTMTVSCSKGTYIRTLCHDIGER 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCG + L R V + + + L + +L L+ ++P+++ + Sbjct: 182 LGCGGCMEALLRTRVGAFVLADSLRLSEIEKLQSDGN---------LENSIVPVEAMFAQ 232 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSG------------------------------------ 274 YP + + NGNP+ Sbjct: 233 YPALRTKAAADRLLYNGNPLEAQNLQKAPEENASDALSKAALTKAAGAVRRTAEEKCTPE 292 Query: 275 ----APLEGLVRVTEGENGKFIGMGEIDDEG-RVAPRRLV 309 P E VR+++ G+F G+ E R P ++ Sbjct: 293 SGGTLPPEEWVRISDSA-GRFCGIYRYVPEKRRYQPVKMF 331 >UniRef50_C4V3N1 tRNA pseudouridine 55 synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3N1_9FIRM Length = 290 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 144/304 (47%), Gaps = 22/304 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + + KP GMSS+D + V+RI++ R GH G LDP A G+LPI LG A + +YL Sbjct: 1 MDGFINVLKPTGMSSHDVVDVVRRIFHQKRVGHAGTLDPAAAGILPIALGRAARLVEYLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVE--ERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 +DK YR G TDT D G + E E PV +AE++ A L FRG I Q P YSA Sbjct: 61 GADKSYRAEIAFGYATDTGDVYGMVTERSEHPVLPAAEEIEAVLARFRGCITQRPPAYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDD 186 +K GK+ + RQG V R +T++ L + + + +++ CSKGTYIR++ D Sbjct: 121 IKVGGKRAADLVRQGRAVDIPPRKVTIHRLELLHIDAVRQRIRIDVDCSKGTYIRSLCAD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G L A + +L R V + + T E L E E A + D Sbjct: 181 IGAGLHLPATMRFLLRSRVGAFTLADAYTPEELAEAGEDA--------------VCAADR 226 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-GRVAP 305 P L F +G GL RV +G F+G+G D + P Sbjct: 227 AL-SLPCYELTQQRVKAFYSGLSTTERRPLAAGLYRVYA--DGVFLGIGRYDANAQEMYP 283 Query: 306 RRLV 309 + Sbjct: 284 EKAF 287 >UniRef50_Q02Z55 tRNA pseudouridine synthase B n=21 Tax=Streptococcaceae RepID=TRUB_LACLS Length = 330 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 102/336 (30%), Positives = 155/336 (46%), Gaps = 44/336 (13%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++NG+L + K G +S D + K++ I + GH G LDP TG+LPI +G++T+ +Y+ Sbjct: 4 NLNGILNVYKEAGWTSFDVVAKLRCILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYM 63 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYS 127 + K Y +G T+T DADG IV + PV + ++ +A+ F G I+QIP MYS Sbjct: 64 EAAGKIYEGQVTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSRFVGKIKQIPPMYS 123 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYEL---LFIRHEGNE----LELEIHCSKGTYI 180 A+K GKKLYEYAR G + R AR IT+ I E ++ CSKGTY+ Sbjct: 124 AVKINGKKLYEYARAGQTIERPAREITIKSFVRTSPIDWNKEEGLVTFSFKVECSKGTYV 183 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT+ DL + LG H+ L+R A + ++ + L + E+ E + L + Sbjct: 184 RTLAVDLADSLGYAGHMSKLQRTASNGLLIKDAIKLSKIEEIQESGK---------LSTI 234 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE---------------------- 278 L P + SD P VNL + G S E Sbjct: 235 LYPAEYAVSDLPRVNLTTVQFDMARVGKKFAQSDWTNEVETADSSVNKTKQQEYLLTDLS 294 Query: 279 --GLVRVTEGENGKFIGMG--EIDDEGRVAPRRLVV 310 + N K + + + EG P +++V Sbjct: 295 LLTTEKFAAFYNDKLVAVYMKHPEKEGIWKPNKVLV 330 >UniRef50_D2R7P9 tRNA pseudouridine synthase B n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7P9_9PLAN Length = 301 Score = 286 bits (732), Expect = 8e-76, Method: Composition-based stats. Identities = 85/308 (27%), Positives = 141/308 (45%), Gaps = 23/308 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L+++KP G +S D + +V+R + GH G LDPLATG+L I +G T+ +Y+ Sbjct: 1 MDGILIVNKPAGPTSRDVVNRVQRCVKPAKVGHAGTLDPLATGVLVIGIGAGTRLVEYVQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQ-IVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y RLG +DT D G I + S + L L F G I Q P YSAL Sbjct: 61 QMPKTYVGQFRLGISSDTEDITGCCITHDESPVVSRDDLRRVLPRFLGKISQKPPAYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K +G++ Y+ AR+G V R I + L R + + EL I C GTY+R++ D+ Sbjct: 121 KVEGERAYDLARRGETVELAPREIVIRRLELTRFDYPDFELVIDCESGTYVRSLGRDIAS 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 L A + L R ++ + +ER +T++ + E + L+P+ + Sbjct: 181 ALETHAVMTDLIRTSIGSFSLERAITMDSISR-------------ETITEHLLPLLAATE 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAP-----LEGLVRVTEGENGKFIGMGEI--DDEG- 301 P V L S + G + + + + + + E+ D+G Sbjct: 228 QLPQVLLTEESVRSLQQGKRIAAPPVDLCLDTTQTVEVAAIDSRDRLVAICELTHRDDGS 287 Query: 302 -RVAPRRL 308 + P ++ Sbjct: 288 ALLKPHKV 295 >UniRef50_C1F2Z6 tRNA pseudouridine synthase B n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2Z6_ACIC5 Length = 313 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 97/304 (31%), Positives = 153/304 (50%), Gaps = 11/304 (3%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 R +NG+L++DKP G++S+D + +V+R GH G LDP+ATG+LP+ LG+ T+ + Sbjct: 19 EARQVNGLLIVDKPGGITSHDVVARVRRATGEKSIGHLGTLDPMATGVLPLLLGKFTRLA 78 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSM 125 QY S+K Y R G TDT DA+GQ E RP+T S E+L A F+G IEQ+P Sbjct: 79 QYFGSSEKSYTGTIRFGFATDTYDAEGQPSSEPRPLTHSLEELRALAARFQGQIEQMPPP 138 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA K G+ Y+ AR G A P+T++E + + + S G Y+R++ Sbjct: 139 FSAKKIGGQPAYKAARAGETPQLRAVPVTIHEFVLESLAEDTAAFRMQVSAGGYVRSVAH 198 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 +LG GCGAH+ LRR A + + + L+ + + AA+ L+ + Sbjct: 199 ELGAAAGCGAHLASLRRTAAGAFTLAEALPLDEIE---------CLAAAKELEARMPHPR 249 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + P V L ++ +NG V +VR+ G+ I +G P Sbjct: 250 AILPEMPAVTTDLQTAGRLRNGMQVNLPDFSTAPMVRIFVGQRD-LIAIGRRVAGTLFQP 308 Query: 306 RRLV 309 ++ Sbjct: 309 VAVL 312 >UniRef50_B8DW45 tRNA pseudouridine synthase B n=5 Tax=Bifidobacterium RepID=B8DW45_BIFA0 Length = 350 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 157/347 (45%), Gaps = 36/347 (10%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +R + +NGVL++DKPQG++S+D + V+ + + GH G LDP+ATG L I +G Sbjct: 1 MGTGKRDAK-VNGVLIVDKPQGVTSHDIVAAVRAALHTRKVGHAGTLDPMATGALVIGVG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVE---ERPVTFSAEQLAAALD-TFR 116 AT+ QY+++ K Y R GQRT T DADG+ VE E V + EQ+ A+ + Sbjct: 60 HATRLLQYIVEHTKTYSATIRFGQRTTTDDADGEFVEREAEAAVLPTLEQVREAVANEYT 119 Query: 117 GDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---------E 167 GDIEQIP+ SA+K G++ Y+ AR+G V +AR +TV+ + + Sbjct: 120 GDIEQIPNAVSAIKVNGQRAYDLAREGRHVELKARRVTVHAFDVLGGRQTQAANGTPVLD 179 Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTL----------- 216 +++ + CS GTYIR + DLG CGAH+ LRR AV + V + Sbjct: 180 VDVRVTCSAGTYIRALARDLGNDFHCGAHLTRLRREAVGAFRVRDARIVRAHAEARTFVN 239 Query: 217 EHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP 276 E+ D +L LL + + PV+ + + + G + Sbjct: 240 RDGEEITRNRAVLDCVGEDLAGHLLTMVQAAQLTLPVLAVSEAQAADLRFGRRIVAQAPT 299 Query: 277 LEGLVRVTEGE-----------NGKFIGMGEIDDEGRVAPRRLVVEY 312 + GE + + + E P + Sbjct: 300 DDERPAHHHGEHVWAAIGSADGEPEVVAIVERAKHHEFKPVTVFAAN 346 >UniRef50_C4FYS6 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYS6_ABIDE Length = 309 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 93/318 (29%), Positives = 153/318 (48%), Gaps = 29/318 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 INGV+ + K G +S DA+ ++ I + GHTG LDP A G+LP+C+G+ATK + L Sbjct: 2 INGVINVYKEVGYTSRDAVSRLTGILRQRKIGHTGTLDPAAEGVLPMCVGKATKLCELLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-------FSAEQLAAALDTFRGDIEQIP 123 K+Y + +LG TDT D G+I E+ +AE L D F G Q P Sbjct: 62 GHKKQYIAVMKLGIATDTEDTTGEITEKTNYPENWYEENLTAENLTKITDKFIGTQFQTP 121 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIR 181 MYSA + G++LYE AR+G + R+ ITVY + + E+ + + CSKGTYIR Sbjct: 122 PMYSAKRVNGRRLYELAREGKVIERKPCEITVYGIEIKNIDIINREITVIVDCSKGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+GE LGC A + L R + +E L+ + ++V++ D ++ Sbjct: 182 TLCKDIGEALGCKAAMKSLLRTRTGDFYLENSYKLDEIEKIVKENRV---------DEII 232 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVR---------TSGAPLEGLVRVTEGENGKFI 292 +P++ + +++ + V NG V R+ ++G+F Sbjct: 233 IPIEKIFYNLRRIDVTGYAGVLLDNGGIVNMEEARLEPGFDNIKDGEKFRMY-NKDGEFK 291 Query: 293 GMGEIDDE-GRVAPRRLV 309 + ++ + ++ Sbjct: 292 AVYCYYEKINALKIDKMF 309 >UniRef50_A7H9F6 tRNA pseudouridine synthase B n=4 Tax=Anaeromyxobacter RepID=A7H9F6_ANADF Length = 315 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 115/313 (36%), Positives = 158/313 (50%), Gaps = 28/313 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I GVL++DKP G +S D +Q+V+RI A RAGH G LDP ATG+L IC+G+A K QYL Sbjct: 3 IAGVLVVDKPAGPTSFDVVQRVRRILRAPRAGHAGTLDPAATGVLAICVGDAVKLQQYLS 62 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D+DK Y G TDT DA+G++VE +AE+L A L FRGDI Q+P MYSA+ Sbjct: 63 DADKAYEATVAFGAATDTEDAEGRVVERGDPSRLTAEELRAVLPRFRGDISQVPPMYSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYEL-------------LFIRHEGNELELEIHCSK 176 + G++L+E AR G V R R + V L + C K Sbjct: 123 RVGGRRLHEAARAGESVERAPRQVRVDALELLELLPLEPPQDRVEAAPVRLARFTVRCGK 182 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTY+RT+ DLG LG AH+ LRR S + E VTLE L E Sbjct: 183 GTYVRTLAADLGRALGVPAHLAALRRTEASGFRAEEAVTLEEAERL----------GREA 232 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGE 296 L L+P+ +PV+ + + +G +R AP + R +G+ + + Sbjct: 233 LLARLVPLGDALRTFPVLEVSWAEARDLAHGRALRRELAPGKAAARA---PDGRLVAVCA 289 Query: 297 IDDEGRVAPRRLV 309 D G + P R++ Sbjct: 290 AGDRG-LCPERVL 301 >UniRef50_Q2KXZ0 tRNA pseudouridine synthase B n=2 Tax=Proteobacteria RepID=TRUB_BORA1 Length = 244 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 112/244 (45%), Positives = 152/244 (62%), Gaps = 5/244 (2%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +RRG+ ++GVLLLDKP G+SSN ALQ+ KR +A +AGHTG LDP ATG+L C+G A Sbjct: 1 MAKRRGQPLDGVLLLDKPVGLSSNHALQRAKRTLDAAKAGHTGTLDPFATGLLLCCMGRA 60 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDI 119 TK S +L++DK YR + G+ TD+ D G IV P L L F+G I Sbjct: 61 TKISGAMLNADKTYRATLQFGEETDSGDLTGNIVARAPEDFPGVEEANLREVLSRFQGSI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 EQIP MYSALK GK LYEYAR GIE+ R R + +Y + + G++ E+++ CSKGTY Sbjct: 121 EQIPPMYSALKRDGKPLYEYARAGIELERPPRRVMIYRIELLSFTGHQAEIDVACSKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ D+G LGC AH+ LRR V + ++R VTL+ L+ + + + + A L Sbjct: 181 IRTLAQDIGRALGCYAHLFALRRTQVGPFSLDRAVTLDALQAMTD--PKAALLALNELPA 238 Query: 240 LLMP 243 L+P Sbjct: 239 GLLP 242 >UniRef50_C2KV13 tRNA pseudouridine 55 synthase n=6 Tax=Bacteria RepID=C2KV13_9FIRM Length = 531 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 90/243 (37%), Positives = 141/243 (58%), Gaps = 5/243 (2%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ ++K +GM+S D L+ ++RI + GHTG LDP+A G+L +C+G+ATK+ L+ Sbjct: 1 MDGIINVNKEKGMTSFDVLRALRRILREKKMGHTGTLDPMAEGVLLVCVGKATKYVDALM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y+ LG TDT D+ G+I+ E V+ S E + L F G EQIP MYSA K Sbjct: 61 AKEKIYQAELTLGIETDTEDSTGKILSEEEVSISKEDIEKILPRFLGKQEQIPPMYSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +GKKLYE AR+G V R+ I ++ L + ++ +L IHCSKGTYIRT+ D+GE Sbjct: 121 LEGKKLYELAREGKTVERKPSQIEIFALEILSYDCPKLRFRIHCSKGTYIRTLCKDIGEA 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG A + L R V ++ ++ +L + +L + ++ L P L ++ Sbjct: 181 LGTKACMSALLREQVGEFSLKNSFSLSEIEKLEGEGKRD-----TYLLPPLYSKENTILT 235 Query: 251 YPV 253 + Sbjct: 236 FGK 238 >UniRef50_Q2LWU1 tRNA pseudouridine synthase B n=1 Tax=Syntrophus aciditrophicus SB RepID=TRUB_SYNAS Length = 312 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 102/321 (31%), Positives = 156/321 (48%), Gaps = 29/321 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L+LDK G +S +Q+VKRI +AGH G LDPLATG+LP+CL EATK Q+L Sbjct: 1 MDGILILDKSPGKTSQKVVQEVKRILGVRKAGHAGTLDPLATGVLPLCLNEATKLVQFLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK YR LG T+T D +G+I + R ++ AL F G I Q P YSA+K Sbjct: 61 LDDKEYRATMLLGVTTETMDIEGRITDRREPEVDEVRIREALQFFTGPISQEPPRYSAVK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 ++G+ LY +AR+G+++ R + VY + + + CSKGTYIRT+ DLGE+ Sbjct: 121 FKGRPLYSWARKGVDIALPPRTVQVYSSILEEIALPYVTFRVACSKGTYIRTLCADLGER 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + LRRL + +E V+LE + + E L ++P+ + Sbjct: 181 LGCGACMSVLRRLRCGCFTLETAVSLEDIADG---------KGRETLLSRVIPLSDGLRN 231 Query: 251 YPVVNLPLTSSVYFKNG--------NPVRTSGAPLEGLVRVTEGENGKFIGMGE------ 296 + + S ++G +V+ G + + Sbjct: 232 VAAIEISEELSGRIRDGFQPDGSTLREYHIPSLADGDMVKFLTSSGG-LVAVARFLYASD 290 Query: 297 ---IDDEGR--VAPRRLVVEY 312 + D G+ V R+ + Sbjct: 291 QLAVSDMGQPAVRILRVFHDR 311 >UniRef50_P59881 tRNA pseudouridine synthase B n=15 Tax=Cyanobacteria RepID=TRUB_PROMM Length = 320 Score = 282 bits (723), Expect = 8e-75, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 148/323 (45%), Gaps = 38/323 (11%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G +++DKP G++S+D + +++R++ R GH G LDP TG+LPI LG AT+ YL + Sbjct: 6 GFVVIDKPAGITSHDCVSRMRRVFGIKRVGHGGTLDPAVTGVLPIALGHATRLLPYLPGA 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR +LGQRT + D G ++ ++ + ++ A L+ FRG I+Q P SA+ Sbjct: 66 -KSYRGSIQLGQRTSSDDQQGDLISKQAWPELNTAEIEAYLEPFRGRIQQRPPQVSAVHV 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGN--ELELEIHCSKGTYIRTIIDDLGE 189 QG++ + AR+G + AR IT+ L + +++ +HCS GTYIR++ DLGE Sbjct: 125 QGERAHARARRGETMEIPARTITIDRLQLLNWNQQLGQIDFNVHCSSGTYIRSLARDLGE 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +GCGA + +L+R + ++ V L A P ++P + + Sbjct: 185 LIGCGACLGWLKRTQALGFHEQQAVPLPD-----------RDNPALTTPPAVLPPLTALA 233 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTS-----------------------GAPLEGLVRVTEG 286 P + L + G + + V Sbjct: 234 HLPRLQLNEEEQESWSCGRRITAHQDQCQPAPKPLASDQQESAPNQTDPSANKSMLVVID 293 Query: 287 ENGKFIGMGEIDDEGRVAPRRLV 309 G+ GM +D V P+ + Sbjct: 294 CRGEVAGMAYWEDNATVKPKVVF 316 >UniRef50_B7KGX7 tRNA pseudouridine synthase B n=19 Tax=Cyanobacteria RepID=TRUB_CYAP7 Length = 308 Score = 282 bits (723), Expect = 9e-75, Method: Composition-based stats. Identities = 104/313 (33%), Positives = 153/313 (48%), Gaps = 27/313 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L+KP G +S+D + K++R+ R GH G LDP ATG+LPI +G+AT+ +L Sbjct: 8 MLGFLNLNKPGGWTSHDCVAKIRRLLKIKRVGHGGTLDPAATGVLPIAVGKATRLLPFLP 67 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y+ RLG T+T D G+I++ + EQ+ L F G+IEQIP +SA+ Sbjct: 68 E-KKAYQARIRLGVTTNTDDLQGEILQIGSANHLTLEQIDPLLRQFIGEIEQIPPAFSAI 126 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDD 186 GK+LYE AR+G V +R + V ++ + E ELELEI C GTYIR+I D Sbjct: 127 SQGGKRLYELARKGELVTPPSRIVHVEKINILDWYPGEHPELELEIICGGGTYIRSIARD 186 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG LG G + L R + + +TL L Q L+ Sbjct: 187 LGNLLGVGGTLANLIRTQSCGLELSKSLTLADLETQQHQGNLP-----------LIFPQL 235 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSG---APLEGLVRVTEGENGKFIGMGEI------ 297 ++L + + G + P V+V GENG F+G+GEI Sbjct: 236 ALKHLLTISLSAPEARRWCQGQSIVIINSIKLPQSQSVQVV-GENGDFLGIGEIATVNIS 294 Query: 298 -DDEGRVAPRRLV 309 D E + P+ ++ Sbjct: 295 DDREQTLIPKVVL 307 >UniRef50_C6HXK4 tRNA pseudouridine synthase B n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HXK4_9BACT Length = 320 Score = 282 bits (722), Expect = 9e-75, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 157/304 (51%), Gaps = 17/304 (5%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++G+LL+DKP G +S+D + +V+++ ++ GH G LDP+A+G+LP+ +GEATK S Sbjct: 8 NPVKVSGMLLVDKPAGPTSHDIVHRVRKLTGIDKVGHGGTLDPMASGLLPLLVGEATKMS 67 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE--QLAAALDTFRGDIEQIPS 124 ++L DK Y LG TDT D+ G +V V +L F G+ Q P Sbjct: 68 SFILADDKSYEFDLTLGATTDTDDSTGVVVSTHSVPEDLSSVRLRTVARDFEGERFQQPP 127 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSA+K QG LY+ AR+G+ VPRE R I +Y L I E L +HCSKGTYIR + Sbjct: 128 MYSAVKQQGVPLYKLARKGVTVPREPRRIEIYSLELIAVEPPVLTFRVHCSKGTYIRVLA 187 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 ++GE L GAH+ LRRL+V + + TL + ++ A + + LL P Sbjct: 188 REIGEALSTGAHLSRLRRLSVGTFSLAEATTLAVME--------KEWAAPDFIRNLLGP- 238 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGA-PLEGLVRV-----TEGENGKFIGMGEID 298 D P V L +S G + + EGL + G++GK + E Sbjct: 239 DRVFDTLPGVRLLGEASTRLLKGALLPATAIFRREGLFHMKDMIRILGQDGKIRAIAEAL 298 Query: 299 DEGR 302 EG Sbjct: 299 REGE 302 >UniRef50_B4WM04 tRNA pseudouridine synthase B, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WM04_9SYNE Length = 322 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 97/329 (29%), Positives = 156/329 (47%), Gaps = 42/329 (12%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+G + L+KP G +S+D + + +++ + GH G LDPLATG+LP+ +G AT+ QYL Sbjct: 2 IHGFINLNKPVGWTSHDCVARTRKLLGTKKIGHGGTLDPLATGVLPLAVGRATRLLQYLP 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K YR + R G T T D +G I +++ + AAL F G IEQ+P MYSA+ Sbjct: 62 EG-KAYRAVIRFGVITTTDDLEGNIAKQQDATELEEAAVDAALSQFIGKIEQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE---GNELELEIHCSKGTYIRTIIDD 186 + +G++LY+ AR G V R +T+ L+ + EL ++I C GTYIR++ D Sbjct: 121 QVEGRRLYDLARAGKAVEVPKRVVTIEHLVSQSWKPGVQPELTVDIKCGAGTYIRSLARD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LGE +G GA + L R S + + +TLE+L + + Q + A + Sbjct: 181 LGEAVGTGATLAGLTRTYSSGFKLTDSLTLENLEKAIAQNTFAPVSAGK----------- 229 Query: 247 PASDYPVVNLPLTSSVYFKNGNP------VRTSGAPLE----GLVRVTEGENGKFIGMGE 296 + LP + ++ G + + VR+ E F+G+GE Sbjct: 230 AMEHLAAITLPPDLARRWQLGQKLEITAGIPIPQPIGDHANYPPVRILEATTQTFLGIGE 289 Query: 297 ID----------------DEGRVAPRRLV 309 I + P+R+ Sbjct: 290 IRSLPFDPLPSDPLSVECATKILVPKRVF 318 >UniRef50_Q0C5Z2 tRNA pseudouridine synthase B n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C5Z2_HYPNA Length = 313 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 99/321 (30%), Positives = 149/321 (46%), Gaps = 20/321 (6%) Query: 1 MSRPR-RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R R R+G + G + L KP M+S A+ +KR+YNA + GH G LDPLA G+LPI L Sbjct: 1 MARQRKRKGEPVTGWINLFKPVDMTSTQAVAIIKRLYNAEKVGHGGTLDPLADGILPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 G+ATK Q+ +D+ K Y R G T + DA+ +I V + AAL + G I Sbjct: 61 GQATKTVQWAMDAHKEYVFTIRWGISTASQDAEAEITATSDVRPERAAIEAALTRYVGTI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGT 178 +Q+P YSA+K G++ Y+ R+G EAR + V+ I + + + + KG Sbjct: 121 QQVPPKYSAIKVAGERAYDLVREGEAFELEAREVDVHAANVIGMPDADHTVIHVVSGKGF 180 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 Y+R + DL LG H+ LRR V + V++E L L E L Sbjct: 181 YVRALARDLAFDLGAEGHISQLRRTRVGAFDAPSAVSIEALEALKE--------DKPGLM 232 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT---------SGAPLEGLVRVTEGENG 289 +L P+ + S P V + + + G V +G E Sbjct: 233 AILKPLHAVLSGMPQVQVSPHDAANIRQGRSVVLLPHVVEGWRAGRSEEDDRVALALAGD 292 Query: 290 KFIGMGEIDDEGRVAPRRLVV 310 + I +GE+ G+ P R+ Sbjct: 293 EAIALGEVRA-GQFEPVRVFA 312 >UniRef50_C8WWJ2 tRNA pseudouridine synthase B n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWJ2_ALIAD Length = 302 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 96/314 (30%), Positives = 139/314 (44%), Gaps = 24/314 (7%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + ++GVLL+DKPQGM+S+D + +V+R R GH G LDP+ATG+L IC+G T+ +Y Sbjct: 2 QALDGVLLIDKPQGMTSHDVVNRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEY 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYS 127 L DK Y G TDT DA+G +V + + A G+I Q P YS Sbjct: 62 LGQGDKDYSGTVVFGVGTDTDDAEGTVVAQASAAGLDLAAVRQAALRLTGEIRQRPPQYS 121 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN----ELELEIHCSKGTYIRTI 183 A+ G++ Y+ ARQG +V R + V + CSKGTY+R + Sbjct: 122 AVHIDGRRAYDLARQGKKVELPERTVRVQAFTLDEFRHEGELAVARFHVRCSKGTYVRAL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DLG +G AH+ LRRLA+ VE ++L+ + A L Sbjct: 182 CRDLGALVGLPAHMRSLRRLAIGSARVEDAISLDDWMASGDPA------------SHLRD 229 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSG---APLEGLVRVTEGENGKFIGMGEIDDE 300 P+ P NG V LV V + G +GE+ D Sbjct: 230 PLLYLEGLPMWQPPREVLERLANGQTVEVGDLLSLSPGDLVLVIDA--GAVAAVGEVVDH 287 Query: 301 G--RVAPRRLVVEY 312 V P+++ + Sbjct: 288 QPAAVRPKKVFWKR 301 >UniRef50_Q4FVL3 tRNA pseudouridine synthase B n=10 Tax=Bacteria RepID=TRUB_PSYA2 Length = 380 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 109/281 (38%), Positives = 153/281 (54%), Gaps = 16/281 (5%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNA-----NRAGHTGALDPLATGMLPICLG 60 I+GV+L+DKPQGM+S + KVK ++ + +AGHTG LDP+ATG+LPICLG Sbjct: 16 PDKIKISGVILVDKPQGMTSQQVVSKVKYLFKSPNHDSKKAGHTGTLDPMATGLLPICLG 75 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFS Y LD+DK Y+ LG +TDT DADGQ+ E ++ F L F G Sbjct: 76 EATKFSHYQLDADKSYQATILLGSQTDTGDADGQVTAEATISAFDDTMLDKIAQQFLGAQ 135 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +QIP MYSALK GKKLYEYAR GIEV R R I + + + +++L + CSKGTY Sbjct: 136 QQIPPMYSALKKDGKKLYEYARAGIEVDRPPRDIILKAIELKAIDEQQIQLTVTCSKGTY 195 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R + +D+ + +G H+ L RL V + ++ +TL +L L + Q Sbjct: 196 VRVLAEDIAKAIGTLGHLTALSRLQVGDFKIDETITLANLEALALEQRQT---------- 245 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 L+P+D+ + L + G + L Sbjct: 246 YLLPVDACIDINAELTLSSEQCERVQMGQRLNVIDQLTNDL 286 >UniRef50_A9AV52 tRNA pseudouridine synthase B n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AV52_HERA2 Length = 291 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 19/305 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L +DKPQG++S D ++ VKR R GH G LDP+ATG+LPI LG AT+ +YLL Sbjct: 2 LHGFLNIDKPQGITSTDVVRVVKRNARQKRVGHGGTLDPMATGVLPIALGNATRLLEYLL 61 Query: 71 DS-DKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 + K Y RLG TD+ D +G ++ E P+ + + L FRG I Q+P Y+A Sbjct: 62 EEERKAYTATLRLGITTDSDDVEGAVIAEAPIPPLDPALIESVLSQFRGAINQVPPQYAA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 ++ GK++YEYAR+G + ARPIT+ +L + + +L + + CSKGTYIR I D+G Sbjct: 122 IRVDGKRMYEYAREGKHIELPARPITIEQLDLLAWDAQQLTIAVDCSKGTYIRAIARDIG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCGAH+ LRR + + + L L + E +P + Sbjct: 182 ALLGCGAHLTALRRTRAGAFDLSNSIGLAELDQQPEVFAAALLPPQAAI----------- 230 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV-TEGENGKFIGMGEIDDEGRVAPRR 307 +++P++NL + G V+ RV + G+ + + + + G P + Sbjct: 231 ANWPLINLADAIVADVRMGRVVQVDSQAE----RVGLLDQAGQLVAIAVLREAG-YQPIK 285 Query: 308 LVVEY 312 + Sbjct: 286 VFAAE 290 >UniRef50_B9KZ57 tRNA pseudouridine synthase B n=2 Tax=Thermomicrobia (class) RepID=B9KZ57_THERP Length = 302 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 13/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+LL+DKP+G +S+D +Q V+ GH G LDP A G+L I +G AT+ ++ Sbjct: 1 MHGILLVDKPRGWTSHDVVQWVRTRLRVQTVGHGGTLDPAAEGLLVIAVGIATRLVRHAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP---VTFSAEQLAAALDTFRGDIEQIPSMYS 127 D+DK Y LG T + D +G+ + P S + +AL F G+ EQ P +YS Sbjct: 61 DADKSYVAHIVLGTGTTSDDLEGEPLAASPLSLYRPSLRDVQSALAEFLGEYEQQPPIYS 120 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 ALK G Y AR G VP + R + V L +++ +L + + C KG Y+R+ DL Sbjct: 121 ALKVGGVAAYRRARAGQPVPLKRRVVRVNSLRLVQYSYPDLIVSLDCGKGFYVRSFARDL 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G +LG GA++ L R V ++ + +++ L ++ + I D Sbjct: 181 GTRLGTGAYLHGLVRTRVGRFSLASAWSIDELNRVLTPSSWPLIARH---------PDEF 231 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR-VAPR 306 ++ PV+ +P + +G PVR S + G +G +IG+ D + R P Sbjct: 232 VAELPVLLVPERELRAWYHGAPVRCSASSSPGTTARAYAPDGNWIGLAHFDPQKRYWQPV 291 Query: 307 RL 308 + Sbjct: 292 LV 293 >UniRef50_B3CTX3 tRNA pseudouridine 55 synthase n=2 Tax=Orientia tsutsugamushi RepID=B3CTX3_ORITI Length = 302 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 87/305 (28%), Positives = 138/305 (45%), Gaps = 12/305 (3%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 ING + L KP G+SS A+ K+K N ++ GH G LD A G+LPI +GEATK Q Sbjct: 2 KSKINGWINLYKPAGISSAQAVAKIKHWLNLSKVGHAGTLDVEAEGVLPIAIGEATKLVQ 61 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYS 127 YL+++ K Y + G +TD+ D G++V+ + ++ + F G+I Q+P YS Sbjct: 62 YLMEATKEYHFTMKFGAKTDSGDVSGKVVQVTSNIPTYDECLSVTKKFIGEIVQVPPSYS 121 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIID 185 ALK G + Y AR G +V R + ++ L ++ CSKGTYIRT+ Sbjct: 122 ALKINGIRAYNLARSGHKVILSPRKVKIFSLKLESYDSINLTATYSTECSKGTYIRTLSQ 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVER-MVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+ L + V+ L R V + + + L L L +M Sbjct: 182 DIALCLQSLSFVVKLARTRVGCFNYKHGSLYLNALNSF------SFAKTIACLKDGIMDT 235 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 S+ P +++ + G V+ LV N + I +G+++D G Sbjct: 236 KCVLSNIPSLSIDDVVARKIYFGQLVQLPRLHNCSLV--WLQYNNQLIAIGKMED-GYFR 292 Query: 305 PRRLV 309 ++ Sbjct: 293 SSKVF 297 >UniRef50_B3CM19 tRNA pseudouridine synthase B n=5 Tax=Wolbachia RepID=TRUB_WOLPP Length = 353 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 98/349 (28%), Positives = 150/349 (42%), Gaps = 51/349 (14%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG L LDKP GMSS A+ ++KRI+ +AGH G LDPLA+G+LPI LGEATK YL Sbjct: 2 VNGWLNLDKPTGMSSAQAVTQIKRIFGIKKAGHLGTLDPLASGILPIALGEATKTIPYLS 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y + G++T T D G I+ + Q+ A+ F G+I Q P +SA+K Sbjct: 62 CDLKAYNFTIKWGKQTTTDDLGGDIIRTSDIKPEYNQINCAIKDFIGEITQTPPQFSAVK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLG 188 +G + Y+ AR G +V + R + ++EL I + + + C G Y+R+I DLG Sbjct: 122 IKGARAYKLARSGQKVNIKPRQVKIHELKMIFLDTINNIADFSMICGSGVYVRSIARDLG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR---------------------------- 220 +L C H+ LRR V + + VT+E L Sbjct: 182 IELNCFGHITQLRRTMVGDFKEDESVTIEQLTKKNTTTYSPQCLTLDTNTYKSCNGQKIL 241 Query: 221 -ELVEQAEQQDIPAAELLDP------------------LLMPMDSPASDYPVVNLPLTSS 261 V+ + +I +LD ++P++S V + L + Sbjct: 242 GAYVKNNVRDEIGLIPVLDTGMTSEGGMTEDDGGNTKGFIIPIESALKSMFKVEISLEEA 301 Query: 262 VYFKNGNPVRTSGAPLEGLVRVTEGENGKF-IGMGEIDDEGRVAPRRLV 309 + G + + + G I + G V P R+ Sbjct: 302 EKIRKGQEIILNNLRNLKNYDIFCTIVGNVPIAICSFT-HGYVKPIRVF 349 >UniRef50_Q9Z5I4 tRNA pseudouridine synthase B n=3 Tax=Mycobacterium RepID=TRUB_MYCLE Length = 320 Score = 279 bits (715), Expect = 7e-74, Method: Composition-based stats. Identities = 99/323 (30%), Positives = 167/323 (51%), Gaps = 30/323 (9%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MS G++++DKP GM+S+D + + +RI+ R GH G LDP+ATG+L + + Sbjct: 1 MSESSTGAGLGPGIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVD 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDI 119 ATK L + K Y RLGQ T T DA+G++++ + E +A A+ RGDI Sbjct: 61 RATKILGLLAGASKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH---------EGNELEL 170 +Q+PS SA+K G++ Y R+G V +ARP+ + + + +L++ Sbjct: 121 KQVPSAVSAIKVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDV 180 Query: 171 EIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD 230 E+ CS GTYIR + DLG+ G G H+ LRR V ++ +++ +LE L EL + D Sbjct: 181 EVECSSGTYIRALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD 240 Query: 231 IPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGK 290 ++ +P +L ++ NG P+ ++G +G+ ++ +G+ Sbjct: 241 --------------ETCLLMFPRRDLTVSEVEATSNGRPISSAGI--DGIYAASDA-DGR 283 Query: 291 FIGMGEIDDEGRVAPRRLVVEYP 313 I + + DEG + +VV +P Sbjct: 284 VIAL--LRDEGP-RTKSVVVLHP 303 >UniRef50_B9Y7W5 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7W5_9FIRM Length = 291 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 151/298 (50%), Gaps = 20/298 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ L++KP GM+S D + +V++ GHTG LDP ATG+L + LG A K YL Sbjct: 10 VDGICLINKPAGMTSFDVVYQVRKAAGIKSVGHTGTLDPQATGVLVVLLGRACKALPYLS 69 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG +TDT D G+ +E RP + Q+ A L++F G Q+P M SA+ Sbjct: 70 GKTKEYIAELTLGTKTDTGDIWGKPLETRPAIKLEPGQIKAVLNSFLGVSMQLPPMVSAI 129 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G+KLYEYAR+G+EV RE RP+ + E+ ++ + + + CS GTY+RT+ +D+ E Sbjct: 130 KKDGRKLYEYAREGVEVEREKRPVEIIEIELLQVASS-IRFRVVCSNGTYVRTLCEDIAE 188 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG + L R Y +++ L+ +++ L+ D AS Sbjct: 189 KLGTVGTMSSLIRTRACGYTLDQCQPLDEVKQGH--------------FQLVSIYDGIAS 234 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 YP++ KNG +R E +V V + + M E ++G R Sbjct: 235 QYPLIEANPAQIPDIKNGKRLRLD--STEPVVGVV--SENQVLAMMERQEDGIYRCLR 288 >UniRef50_A6LLV6 tRNA pseudouridine synthase B n=1 Tax=Thermosipho melanesiensis BI429 RepID=TRUB_THEM4 Length = 304 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 91/317 (28%), Positives = 143/317 (45%), Gaps = 30/317 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L KP+G++S+D + +V+R N R GH G LDP A G+L + +G T+ +YL Sbjct: 1 MMGFLNLYKPKGVTSHDVVDEVRRKLNIRRVGHAGTLDPFAEGVLVVGVGSTTRLLEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 KRY V A LG T+T D G+IVEER E++ + +F G +Q+P YSA K Sbjct: 61 VERKRYYVKALLGVITETFDITGEIVEERECNIPDERIIDVVKSFVGKYKQVPPAYSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 Y+G++LY+ AR+G + + +Y + I + E+ SKGTYIR++ D+G K Sbjct: 121 YKGERLYKLAREGKIISLPPVDVEIYGIDKIIVKKPHFSFEVEVSKGTYIRSLCMDIGYK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA L+RL+V + + + + E L L+ + Sbjct: 181 LGCGATAKELKRLSVGTFDIRDAINPFEV-------------GREKLLESLIDVQKVLP- 226 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPL-----EGLVRVTEGENGKFIGMGEIDDEG---- 301 P V + NGN V NG+ + + + + Sbjct: 227 LPKVEIYKDFVENIYNGNQPTLDFVKEMVDSFSKDDDVMLICNGQLVAIAKAERNSKFLE 286 Query: 302 -------RVAPRRLVVE 311 +++ E Sbjct: 287 KNLPRGRIFKLKKVFKE 303 >UniRef50_D2Q8K5 TruB tRNA pseudouridine synthase B n=6 Tax=Bifidobacterium RepID=D2Q8K5_9BIFI Length = 362 Score = 277 bits (708), Expect = 4e-73, Method: Composition-based stats. Identities = 100/362 (27%), Positives = 156/362 (43%), Gaps = 57/362 (15%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+ + I+G+L++DKPQG++S+D + ++ + R GH G LDP+ATG+L I G Sbjct: 1 MTTKKPE---ISGLLVVDKPQGVTSHDVVAAIRGALHMKRVGHAGTLDPMATGVLVIGFG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVE----ERPVTFSAEQLAAAL-DTF 115 AT+ Y++D K Y RLGQRT T DADG+++E S E + + + F Sbjct: 58 NATRLLNYIVDHSKTYLATIRLGQRTATDDADGELLEPSAPIAEAFPSRETVERVIAERF 117 Query: 116 RGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELE---- 171 G IEQ+P+ YSA+K G++ Y+ AR+G +V +ARP+TV E Sbjct: 118 TGRIEQVPNSYSAIKINGQRAYDLAREGKQVELKARPVTVEEFRVDAVRYGYASTRFADA 177 Query: 172 --------------------------------IHCSKGTYIRTIIDDLGEKLGCGAHVIY 199 + CS GTYIR + DLGE LG G ++ Sbjct: 178 PLTDAQDIGAGERWHPVSAAPDVRPVMELDVAVSCSAGTYIRALGRDLGEALGLGGYLTM 237 Query: 200 LRRLAVSKYPV---------ERMVTLEHLRELVEQAEQQDIPAAELL-DPLLMPMDSPAS 249 LRR+ + + T + + I AE L D L +DS + Sbjct: 238 LRRIRIGDFTETMPNIVTAHTESKTFTNREGAEVTRNRAVIDDAEHLTDRALGMVDSAKA 297 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P++ + + + G + + E G + + E G P + Sbjct: 298 SMPMLRISDQEATDLRFGRRIAHD---IRETTAAYVPETGDLVAIIERAKRGEAKPVAVF 354 Query: 310 VE 311 V+ Sbjct: 355 VQ 356 >UniRef50_Q5PAY2 tRNA pseudouridine synthase B n=10 Tax=Anaplasmataceae RepID=TRUB_ANAMM Length = 306 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 98/307 (31%), Positives = 152/307 (49%), Gaps = 21/307 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L +DKP MSS + +VK+I+N + GH G LDPLATG+LP+ +GEATK Y +D Sbjct: 9 GWLNVDKPLHMSSGSVVGRVKKIFNC-KVGHAGTLDPLATGVLPVAVGEATKTIPYAVDG 67 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y V + G + T DA+G+I++ + SA+ + AL F G+I Q+P +SA++ + Sbjct: 68 LKSYAVTVQWGSQRSTDDAEGEIIKTSSLRPSADSIREALGQFVGNIRQVPPAFSAVRVR 127 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFI--RHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y AR+G V + + + + + E N + I C KG YIR+ DLG Sbjct: 128 GVRAYRLARRGEAVSLPPKEVCIVSIDLLSADEESNTADFLIVCKKGVYIRSFARDLGAS 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC +V +LRR +V + E VTL+ L L A++L+ L+P+ D Sbjct: 188 LGCFGYVSFLRRKSVGPFSEENSVTLDRLEALA---------DADVLNEALLPISYVMGD 238 Query: 251 -YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE-------NGKFIGMGEIDDEGR 302 +++ + K G V L GL + G + + ++ G Sbjct: 239 ALLRLHVDAEVAEIVKKGQSVSLQRTSLNGLYAAENYDMCYLSRVGGVPVAVCKVV-NGT 297 Query: 303 VAPRRLV 309 P R+ Sbjct: 298 ARPVRVF 304 >UniRef50_Q8D2X8 tRNA pseudouridine synthase B n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=TRUB_WIGBR Length = 327 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 185/302 (61%), Gaps = 6/302 (1%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 R+ING+LLLDKP G+SSN LQK+K+++ A +AG+ G LDP+A+GMLPI G+ATKFS Y Sbjct: 30 RNINGILLLDKPIGLSSNLILQKIKKLFKAKKAGYIGTLDPIASGMLPIFFGDATKFSDY 89 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 LL+++K Y++ A+LG++T+T D+ G+I+ RP+ + L F+G+I Q P M+S Sbjct: 90 LLNTNKWYKIKAKLGEKTNTLDSFGKIICIRPILNIKKLNIEKILSEFQGEIYQKPPMFS 149 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 +LK+ GK LY+YARQGI +PRE R + V+ + + L I CSKGTY+R+I+DD+ Sbjct: 150 SLKHLGKPLYKYARQGIYIPREKRKVYVHYIKLLSFSKKYFSLTIKCSKGTYVRSIVDDI 209 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 GEKL CGAH++ LRR + Y M+ L + ++ + LD L+P++S Sbjct: 210 GEKLFCGAHIVKLRRTKLFNYKESHMIDSNKLYNIKKK-----FNDLKKLDECLLPIESI 264 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P++ + +NG + L ++ + KF+G+ +I+ GR + Sbjct: 265 FKKLPIIVVNDDIINRLRNGIKLNFWKIKKNNLFKIISKDTKKFVGIIDINKYGRANSIK 324 Query: 308 LV 309 L+ Sbjct: 325 LI 326 >UniRef50_Q8R5X8 tRNA pseudouridine synthase B n=16 Tax=Fusobacterium RepID=TRUB_FUSNN Length = 287 Score = 276 bits (706), Expect = 7e-73, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 159/295 (53%), Gaps = 14/295 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G+++++KP+G++S D ++K+K+ + GHTG LDPLA G++ +C+G+ATK + L Sbjct: 1 MEGIIVINKPKGITSFDVIRKLKKFLKTKKIGHTGTLDPLAIGVMLVCVGKATKLASDLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y +G TDT D +G+ + E + S E L +L F G+I+Q+P MYSA+K Sbjct: 61 AKDKVYIADFDIGYATDTYDIEGKKIAENIIEVSKENLEQSLKKFIGNIKQVPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G KLY AR+GIEV R R IT+ + + + N+ ++E SKG YIR++I D+G+ Sbjct: 121 IDGNKLYHLARKGIEVERPERDITIEYINLLDFKDNKAKIETKVSKGCYIRSLIYDIGQD 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG A + L+R V +Y +E +LE + E+ + + E + Sbjct: 181 LGTYATMTALQRKQVGEYSLENSYSLEQIEEMTLNNNFKFLKTIEEIFS----------- 229 Query: 251 YPVVNL-PLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 Y NL + +KNGN V+ R+ +FIG+ I++ + Sbjct: 230 YDKYNLQTEKEFILYKNGNTVKIKENLENKKYRIYF--QDEFIGLANIENNNLLK 282 >UniRef50_B5YEH8 tRNA pseudouridine synthase B n=2 Tax=Dictyoglomus RepID=B5YEH8_DICT6 Length = 293 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 85/307 (27%), Positives = 141/307 (45%), Gaps = 21/307 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG LL++KP G++S + +++VK++ + GH G LDP A G+L I LG+ + +YLL Sbjct: 1 MNGFLLINKPPGITSFEVVRRVKKLSKEKKVGHMGTLDPRACGLLIIGLGKYVRLEEYLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQ--IVEERPVTFSAEQLAAALDT-FRGDIEQIPSMYS 127 K Y V G +DT D + ++ + E L L F G+IEQ P YS Sbjct: 61 KLPKTYIVEVLFGVSSDTYDRESYRFFYDKEEKPVNTEILEETLKKYFTGEIEQTPPPYS 120 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIID 185 A+ +G++ Y AR+ I V R +T+YE + + + S GTYIR+++ Sbjct: 121 AVHIEGERAYNLARKNISVSLPKRKVTIYESEILNFDKTRNTALIRFKVSSGTYIRSLVH 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+GEKL V +L R + V + ++E + LL P++ Sbjct: 181 DIGEKLNTKTLVSFLVRTDIGHLSVNDSIPYNKIKEGIT-------------KKLLSPLE 227 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 D+PV NGN + + +E G+FI +G++ + P Sbjct: 228 --VLDFPVYKTSEEEEKKILNGNAIEARLSTIESPYISIINSQGRFIAVGKVSGN-IIKP 284 Query: 306 RRLVVEY 312 ++ + Sbjct: 285 DKVFPQN 291 >UniRef50_B1CB51 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CB51_9FIRM Length = 302 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 92/310 (29%), Positives = 155/310 (50%), Gaps = 21/310 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGV+ ++K Q M+S+D KV++I + GH+G LDP+A G++ + +G +TK S Y+ Sbjct: 2 LNGVICINKEQDMTSHDVCFKVRKILGTKKVGHSGTLDPMAEGVMGVLVGRSTKLSSYIT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y + G+ +D+ D + + F+ + ++ F GDI Q P +YSA+K Sbjct: 62 SFDKEYIAGIKFGKDSDSYDIWTDMKDVPIPDFTKKDFKKVINRFVGDITQTPPIYSAIK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHE-GNELELEIHCSKGTYIRTIIDDLGE 189 +GK LY+YA +G EV +R + + + I ++++ CSKGTYIR++I D+G Sbjct: 122 VKGKPLYKYALKGEEVEIPSREVCIDSIEIIETNLPYSAKIKVSCSKGTYIRSLIHDIGV 181 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG A + L R +E +TL +L + V+ D ++ D + Sbjct: 182 SLGTSAVMNSLVRTKNGVLNIEDSITLSNLEDKVKSGRV---------DEVIKRDDYFLT 232 Query: 250 DYPVVNLPLTSSVYFKNGNPV-------RTSGAPLEGLVRVTEGENGKFIGMGEIDDEG- 301 D V++ +S NGN + T VR+ KFIG+G+ DE Sbjct: 233 DIHRVDVNPSSGKILLNGNGLIKKNLITPTDDIKPGTTVRLYL--EDKFIGLGKKTDEEG 290 Query: 302 -RVAPRRLVV 310 + P +++ Sbjct: 291 ILIRPIKILY 300 >UniRef50_Q3ABA1 tRNA pseudouridine synthase B n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=TRUB_CARHZ Length = 288 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 144/306 (47%), Gaps = 29/306 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + L KP GM+S+D + V++ + GH G LDP A G+LP+ +G+AT+ +YL Sbjct: 1 MDGFINLLKPPGMTSHDVVAYVRKKLKTGKVGHLGTLDPAAAGVLPVAVGQATRLIEYLE 60 Query: 71 D-SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 + + K Y G T T D +G+I+E++ + +A + L F G+IEQ P + SA Sbjct: 61 NVAMKEYLAEIVFGITTATWDMEGEILEQKDASFLTAGDIEKVLGHFHGEIEQTPPLASA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTII 184 +K GK LY Y RQG +V R + + + + + L I CS+GTYIR+I Sbjct: 121 VKVSGKPLYRYQRQGEKVEPPKRKVFIDSIELLEFLADKPQPAVRLYIRCSRGTYIRSIA 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +++G L GA + +L R + ++ L D L+P Sbjct: 181 NEIGNLLKTGATLKFLLRTRSGPFLLDDSNLLHE-------------------DFTLIPP 221 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTEGENGKFIGMGEIDDEGRV 303 + D+P +NL + KNG V+ G V GE K I G I + Sbjct: 222 EQLFQDFPKINLTREQYLRVKNGGGVKVETKGENFGPVFAYYGE--KIIATGMICGQ-IF 278 Query: 304 APRRLV 309 P ++ Sbjct: 279 RPEKVF 284 >UniRef50_A0LHM2 tRNA pseudouridine synthase B n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=TRUB_SYNFM Length = 306 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 155/298 (52%), Gaps = 21/298 (7%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 R ++ +G+L+LDKP+GM+S+ + +VKR+ +AGH G LDP ATG+L +C+ +AT+F+ Sbjct: 2 REKEPSGLLVLDKPEGMTSSTLVTRVKRLLGLRKAGHCGTLDPFATGVLLVCVNQATRFA 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSM 125 + L K YR ARLG TDT D G +V R V S +L A+ G Q Sbjct: 62 EQLTGQTKVYRFTARLGIETDTLDRTGTVVRTRDDVVPSERELLEAVRLHEGTQVQEVPR 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 Y+A+K QGK+LYE AR+GI+V R + ++ I + E+ LE CSKGTY+R + Sbjct: 122 YAAVKVQGKRLYELARKGIDVELPRREVHIHRFDLISYRYPEVVLETKCSKGTYVRQLAA 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DLG +LGCGAHV++LRRLA + +ER +LE + + L+PM Sbjct: 182 DLGRRLGCGAHVMHLRRLACGPFGLERASSLEQMHDGASDGSWL---------AKLVPMA 232 Query: 246 SPASDYPVVNLPLTSS-VYFKNGNPVRTSGAPLE--------GLVRVTEGENGKFIGM 294 S P + + + G + G VR+ +G+ + Sbjct: 233 DALSHLPALTIEDGQVLSRLRYGQ-LDADWEAEHSGRFSRRVGPVRIVTA-DGRLAAL 288 >UniRef50_D1AS76 tRNA pseudouridine synthase B n=1 Tax=Anaplasma centrale str. Israel RepID=D1AS76_ANACI Length = 308 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 20/306 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L +DKP MSS + ++++I+N + GH G LDPLATG+LPI +GEATK QY +D Sbjct: 12 GWLNIDKPLYMSSGGVVGRIRKIFNC-KVGHAGTLDPLATGVLPIAVGEATKTVQYAVDG 70 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + G + T DA+G+++ + SA + AL F GDI+Q+P +SA++ Q Sbjct: 71 LKSYVAAVQWGAQRSTDDAEGEVIGTSSLRPSASSIREALGQFVGDIQQVPPAFSAVRVQ 130 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 190 G + Y AR+G V + + + + + + + I C +G YIR+ DLG Sbjct: 131 GVRAYNLARKGKAVSLAPKSVCIVSVDLLSVDEEKNVANFLIVCRRGVYIRSFARDLGIS 190 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC +V LRR +V + E +TLE L EL A LD +L+P+ Sbjct: 191 LGCLGYVSSLRRKSVGPFLEEDSITLERLEELAS---------ANALDGVLLPISHVMGA 241 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV------TEGE-NGKFIGMGEIDDEGRV 303 + + + + G V L GL V + G + + ++ G Sbjct: 242 TLKLCVDAEVAEIVRKGQSVSLQHTSLNGLYAVENYDMCYLSQVGGVPVAICKVV-NGTA 300 Query: 304 APRRLV 309 P R+ Sbjct: 301 RPVRVF 306 >UniRef50_A8SMZ3 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMZ3_9FIRM Length = 298 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 99/305 (32%), Positives = 148/305 (48%), Gaps = 18/305 (5%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 + NG+L + KP+G +S D + V++IY + GH G LDP ATG+LPI +G ATK +Y+ Sbjct: 2 NFNGILNVYKPKGFTSRDVVNIVRKIYKTKKIGHAGTLDPNATGVLPIAIGNATKIVEYI 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RGDIEQIPSMYSA 128 K Y LG TDT D G + + V Q + + I QIP MYSA Sbjct: 62 QSMGKCYVGEMTLGIETDTLDIWGGSLNSKEVYLDKNQFFEVIKEYDNKKISQIPPMYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK GK+LYEYAR GIEV RE R +Y L+ + N++ E++CSKGTYIR++ +D+ Sbjct: 122 LKKNGKRLYEYARLGIEVEREKREAEIYSLIILNFYDNKIRFEVNCSKGTYIRSLFNDIA 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 A++ L R + +E +LE L+ L LM ++ Sbjct: 182 SDTDNFAYMSSLCRSKYGIFKIENAFSLERLKNF----------NENQLYNSLMKIEDVF 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE---GRVAP 305 Y ++ + NG +T EG+ ++ + FIG+GE+ E + Sbjct: 232 E-YERIDFDKKYFKHISNGLR-KTFDIEKEGIFKIYC--DNIFIGIGELVSEESGKLLKM 287 Query: 306 RRLVV 310 + Sbjct: 288 INIFY 292 >UniRef50_C0W0C7 Possible tRNA-pseudouridine synthase I n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0C7_9ACTO Length = 339 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 95/330 (28%), Positives = 155/330 (46%), Gaps = 30/330 (9%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 PR +G+++++KP G++S+D + +R+ + GH G LDP+ATGML I +G+AT Sbjct: 21 PRAETTAADGLIIINKPAGVTSHDVVSASRRLSATRKVGHAGTLDPMATGMLIIGVGKAT 80 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA-----EQLAAALDTFRGD 118 + Y+ +DK Y +LG TD+ DADG+I + + +++ A + F GD Sbjct: 81 RLLHYITGADKGYLARIQLGVSTDSDDADGEITAVNSIPGTRLFGLTKEIDAQMRYFVGD 140 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYEL-------------LFIRHEG 165 I Q P+ SA+K GK+ + R G E+ ARP+ V + + Sbjct: 141 IMQRPTTVSAIKVNGKRAHALHRAGEEIELAARPVHVAKFARMSEVEFVEVTLDDEPYTF 200 Query: 166 NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 E ++ + CS GTY+R + DLG LG GAH+ +L R V + +M L + V + Sbjct: 201 AEFDVVVECSSGTYVRALARDLGAALGLGAHLTHLHRYRVGSWTASQMRELTDISAEVAE 260 Query: 226 AEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTE 285 Q + + D+ +Y + L ++ NGN R + + + Sbjct: 261 NGQVQVISLT---------DACLQEYDGLELNEVQAIALCNGNTTRLTADATKSPIVAAL 311 Query: 286 GENGKFIGMGEIDDEGRVAPRRLV-VEYPA 314 NG+ G+ E D G P + E PA Sbjct: 312 -YNGQVRGLLERDGNG-YRPLVIFETEMPA 339 >UniRef50_C7NH20 tRNA pseudouridine 55 synthase n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NH20_KYTSD Length = 348 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 151/350 (43%), Gaps = 46/350 (13%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSRP +G+L+LDKP G +S+D + + + + + GH G LDPLATG+L + +G Sbjct: 1 MSRPAPAP---DGLLVLDKPSGPTSHDIVSRCRWLCATRKVGHAGTLDPLATGVLLVGVG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF------SAEQLAAALDT 114 AT+ +L+ +DK YR RLG+ T T DA G+ + V + L A + Sbjct: 58 RATRLLTHLVGADKTYRATVRLGEGTTTEDAQGKFTQTTGVPDRDALLADPQPLRDACNA 117 Query: 115 FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH---------EG 165 G++ Q+PS SALK GK+ + R G E EARP+TV+ + E Sbjct: 118 LSGELMQVPSTVSALKVGGKRAHARVRDGEEFELEARPVTVHAFELLDVQPAQGASGTEV 177 Query: 166 NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 +L++ + S GTY+R + DLG LG AH+ LRR AV + + ++ L E E Sbjct: 178 LDLDVRVRVSSGTYVRALARDLGGSLGTAAHLTALRRQAVGGFTLASATPVDELVEAREG 237 Query: 226 AEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV---- 281 P+L + PV L + +NG V P V Sbjct: 238 GALPASM------PVLPMGEVARRVLPVAQLDEELTGRVRNGQQVTLPEPPAWARVDAAG 291 Query: 282 ---------------RVTEGENGKFIGMGEIDDEGRVAPRRLV--VEYPA 314 G +G + + E + R P + PA Sbjct: 292 RVLSGPRPPLSADGRAALLGPDGDLVAVVEPSGQ-RWKPVTVFPPATPPA 340 >UniRef50_C9LRE6 tRNA pseudouridine synthase B n=1 Tax=Dialister invisus DSM 15470 RepID=C9LRE6_9FIRM Length = 283 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 144/299 (48%), Gaps = 17/299 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVL + KP GM+S D + ++RIY + GH G LDP+A G+LP+ LG + + +Y Sbjct: 1 MDGVLNVLKPAGMTSFDVIACLRRIYGQKKIGHGGTLDPMAAGVLPVFLGRSARLIEYAP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y +G TDT D G+I++ V F G IEQIPS YSA+ Sbjct: 61 IHRKTYEAEFVMGLATDTEDMTGRIIKTGKVCSDISLWERVASKFTGIIEQIPSSYSAIM 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GK+ Y+ AR G +V +R + VY L + + L + CS GTY+R + DLG K Sbjct: 121 VDGKRAYQLARNGKQVILPSRKVEVYHLQIREIQSPYIRLSVTCSAGTYVRALGRDLGNK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 +G + +L R + + + + TLE + + L+ + S+ Sbjct: 181 MGVPLAMSFLLRTKMGVFSIGQAKTLEEIERNPKDC-------------LMTDISLLLSN 227 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 V+L ++ F G +RT+ +E V E +F+G I + G + P+++ Sbjct: 228 LENVSLSEDAAKDFLQGKRLRTALPDME--VTAVFQEE-RFLGTAFI-ENGVLHPKKVF 282 >UniRef50_Q7MBB8 tRNA pseudouridine synthase B n=3 Tax=Cyanobacteria RepID=TRUB_GLOVI Length = 292 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 90/304 (29%), Positives = 147/304 (48%), Gaps = 20/304 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L LDKP G++S+D + +++R+ R GH G LDP ATG+LP+ +G AT+ ++L Sbjct: 1 MEGFLNLDKPAGLTSHDCIARLRRVLGERRIGHGGTLDPAATGVLPVAVGRATRLLRFLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K YR R G TDT D +G I+ + ++ L FRG I Q+P YSA+ Sbjct: 61 EG-KVYRATVRFGLSTDTDDLEGNILADAGAADLDLGRVQVHLQAFRGTISQVPPRYSAI 119 Query: 130 KYQGKKLYEYARQGIEV-PREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIID 185 +G++LY+ AR+G+ + R + + L + EL++EI CS GTYIR+I Sbjct: 120 HQEGERLYDLARRGVAIAEIAPRTVEIQALTVLDWYPGHYPELQIEIACSTGTYIRSIAR 179 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DLG LG GA + L R + +E + L + + L+ Sbjct: 180 DLGTALGTGATLARLLRTRSGPFALEASLPLAAVEAGFQAGTVP-----------LIGPR 228 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + V+L + + G V G ++ E E +F+G+ + G + P Sbjct: 229 TALAHLAAVHLEPPLAARWLMGQRV--PGDCEGAFAQIWECETDRFLGVAACEA-GSLQP 285 Query: 306 RRLV 309 ++ Sbjct: 286 LVVL 289 >UniRef50_Q04ED7 tRNA pseudouridine synthase B n=1 Tax=Oenococcus oeni PSU-1 RepID=TRUB_OENOB Length = 298 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 156/308 (50%), Gaps = 25/308 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG++L+DKP G++S D + K+++I+ + GHTG LDP TG+L I LG+ATK YL + Sbjct: 3 NGIVLVDKPAGLTSFDVVAKLRKIFQQKQVGHTGTLDPSVTGLLVIVLGKATKLIDYLQE 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQL--AAALDTFRGDIEQIPSMYSAL 129 + K+YR LG +TDT D DGQ+ E + + + AA D+F G +Q+P MYSA+ Sbjct: 63 NQKQYRGTLILGLKTDTQDMDGQVTEMQFLKEAIADFKKKAAFDSFLGSSDQLPPMYSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE-------LEIHCSKGTYIRT 182 K GK LYE AR+G + R++R I V E + + SKGTYIRT Sbjct: 123 KVGGKHLYELARKGETIERKSRKIKVMEFQQVGGSKFDASKGQEYINFVATVSKGTYIRT 182 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 +I+D G KLG A ++ LRR+ Y V+ + LE + + ++ Sbjct: 183 LIEDFGAKLGLPATMMRLRRIEADGYDVKNSINLEEILAS------------KTPRKFII 230 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 PM+ P ++ KNG ++ + V N F + E D G Sbjct: 231 PMEKLLPTLPKYSVGSDDWQLIKNGGWLKELPISVSP---VKIFYNNSFQAIYEKQD-GF 286 Query: 303 VAPRRLVV 310 P+++++ Sbjct: 287 YKPKKMLI 294 >UniRef50_A1WLI1 tRNA pseudouridine synthase B n=103 Tax=cellular organisms RepID=TRUB_VEREI Length = 331 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 126/315 (40%), Positives = 172/315 (54%), Gaps = 19/315 (6%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 SR R + R ++GVLLLDKP +SSN ALQK K + A +AGHTG LDPLATG+LP+C G Sbjct: 5 SRTRVQRRPVHGVLLLDKPLALSSNQALQKAKWLLRAEKAGHTGTLDPLATGVLPLCFGA 64 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF---SAEQLAAALDTFRGD 118 ATKFSQ LD+ K Y IA G T T DA+G +++ V + E+L+A F G Sbjct: 65 ATKFSQLQLDAPKTYEAIALPGVTTSTGDAEGAVLQRCAVDPAQLAPERLSAVQRQFTGP 124 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG----NELELEIHC 174 I Q+P M+SALK G+ LY YAR GI + R AR + ++ L + +++ + C Sbjct: 125 ISQLPPMHSALKKDGRALYTYARAGIALERAARAVVIHALELSLVQHAPAQTAIKIAVTC 184 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKG YIRT+ +D+G LGCGAH+ LRR +ER ++LE L+ L E Sbjct: 185 SKGCYIRTLAEDIGAALGCGAHLSALRRTDSGGIGIERCISLERLQALPEAERL------ 238 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGM 294 L P S + + V L ++ F +G P R P V V + +G+ Sbjct: 239 ----ACLQPPQSLLTRHLRVTLDSDNAARFLSGLP-RRGAWPDAPAVAVFGADPPALLGV 293 Query: 295 GEIDDEGRVAPRRLV 309 G I G + P RL+ Sbjct: 294 GHI-AGGCLLPDRLL 307 >UniRef50_Q493T5 tRNA pseudouridine synthase B n=2 Tax=Candidatus Blochmannia RepID=TRUB_BLOPB Length = 260 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 126/256 (49%), Positives = 170/256 (66%), Gaps = 1/256 (0%) Query: 1 MSRPR-RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M R + R RDING+LLLDKP+G+SS L K+K+++NA + GHTG LDPLATGMLP+C Sbjct: 1 MKRYKNVRNRDINGILLLDKPKGISSGLFLNKIKKLFNAKKIGHTGTLDPLATGMLPVCF 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 G+ATK ++YLL SDKRY+V A+LG TDT D+DG I+ PV + L L++F G Sbjct: 61 GKATKLAKYLLHSDKRYKVSAQLGVSTDTFDSDGTIISVSPVQSNDYILEQCLESFIGIR 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 QIP M+S+LKY+G LY+YAR+GI PR+ R I +Y L I+ N +EL++HCS GTY Sbjct: 121 NQIPPMFSSLKYRGVPLYKYARKGIYFPRKPRSIHIYNLSLIKKTENIIELDVHCSTGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR+I++D+GE LGCGAHVI LRRL+V +Y M+ L + D+ LD Sbjct: 181 IRSIVNDIGEYLGCGAHVIELRRLSVGQYISSSMINPATLEAIFYNDSFDDVQVFCKLDA 240 Query: 240 LLMPMDSPASDYPVVN 255 L PM+ + ++ Sbjct: 241 FLTPMNMIMLELANIS 256 >UniRef50_A7BD72 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD72_9ACTO Length = 355 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 160/353 (45%), Gaps = 47/353 (13%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R R G+L++DKPQG++S+D + +V+R+ + GH G LDP+ATG+L I +G Sbjct: 6 MARRPDNPRP--GLLVIDKPQGLTSHDVVSRVRRLARTRKVGHGGTLDPMATGVLVIGIG 63 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDI 119 +ATK ++ K YR R G T+T DA+G + S EQL AAL RGDI Sbjct: 64 KATKLLTWVSGHSKEYRATIRFGVATNTDDAEGVATAAVGCASLSEEQLEAALAPQRGDI 123 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELEL--------- 170 Q+PS SA+K GK+ Y AR G +V ARP+ + L + + Sbjct: 124 MQVPSTVSAIKVNGKRAYALARAGEDVELAARPVRISRLEVLAPPRPAWCILDEPDPETA 183 Query: 171 -----------------EIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERM 213 + CS GTY+R + D GE LG GAH+ LRR V P+E Sbjct: 184 PDGAVAPGSVRVVDVDVVVECSSGTYVRALARDAGEALGVGAHLTALRRTRVGDVPLEAA 243 Query: 214 VTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT- 272 +TL+ L VE A + AE + PL+ ++ + +P + + + F +G R Sbjct: 244 MTLDELSAAVEAASAEGESDAEPVLPLVPLGEAARTMFPSLLMTEAEAGAFAHGQAPRRS 303 Query: 273 ----------------SGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 S E +G +G+ ID R+ + Sbjct: 304 RSELAQWAVEAGYCPKSAPEEEPAPIAAVAPDGTVLGLLRIDA-ARLRTVLVF 355 >UniRef50_Q30WI7 tRNA pseudouridine synthase B n=4 Tax=Desulfovibrionaceae RepID=TRUB_DESDG Length = 309 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 90/304 (29%), Positives = 144/304 (47%), Gaps = 22/304 (7%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+ + + +GVL+L+KP+G +S + ++KR + GH G LDP+A G+L + LG Sbjct: 1 MADSKLAQQ--HGVLVLNKPKGPTSAHCIARIKR-LGQKKIGHAGTLDPMAQGVLLVLLG 57 Query: 61 EATKFSQYLLDSD-KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGD 118 + TK S YL++ K Y LG+ TDT D +G+ + + E + A+D + G Sbjct: 58 QCTKISGYLMEGGEKIYSGTLELGRTTDTWDDEGETLSTADWTHVTEEDVVRAVDLWTGS 117 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 EQ YSA K++G+ LY+ AR+G E P + R I + + + E + +HCS GT Sbjct: 118 SEQQVPAYSAAKHKGQPLYKLAREGKETPVKTRRIEISQAETLAVELPFVRFRVHCSSGT 177 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIR++ LG +LGCGA + L R + ++ L+ + L Sbjct: 178 YIRSLAHSLGNRLGCGAVLTELIREYSHPFSLDEAHDLDDVLA-----------EPAELA 226 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNP------VRTSGAPLEGLVRVTEGENGKFI 292 ++P+D +P + L KNG P S EG+ V G + Sbjct: 227 GRVIPLDKALPHWPKLRLSAADEARVKNGMPHPYDPAEMASMPFTEGIRAVLLDPAGDPL 286 Query: 293 GMGE 296 + E Sbjct: 287 ALAE 290 >UniRef50_B1ZX46 tRNA pseudouridine synthase B n=3 Tax=Verrucomicrobia RepID=TRUB_OPITP Length = 241 Score = 272 bits (697), Expect = 8e-72, Method: Composition-based stats. Identities = 97/248 (39%), Positives = 143/248 (57%), Gaps = 14/248 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +PR+ ++GVLL+DKP +S+D + +++R N R GH G LDP+ATG++ + +G Sbjct: 1 MIQPRKE---LDGVLLVDKPTAHTSHDVVARLRRKLNMKRIGHAGTLDPMATGLMILLIG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDI 119 +AT SQYL DK Y LG+ TD+ DADG+++ PV + ++ AA+ F GD Sbjct: 58 KATTISQYLTSLDKEYEGTIELGKVTDSQDADGEVLSTLPVPPFTEAEIRAAMAGFMGDQ 117 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q P MYSA+K G LY+ AR+G EV RE R I V R + + + C+KGTY Sbjct: 118 YQTPPMYSAIKVDGVPLYKTARKGGEVEREPRFIRVSSFELTRFALPQFDFRLRCTKGTY 177 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +RTI DLG++LGCGAH+ LRR A K+ + +TL+ + L ++ Sbjct: 178 VRTIAHDLGQRLGCGAHLAALRRTATDKFKLADALTLDAIEAL----------PLPEIEK 227 Query: 240 LLMPMDSP 247 L+P+ Sbjct: 228 RLIPVYQA 235 >UniRef50_D1BM63 tRNA pseudouridine synthase B n=3 Tax=Veillonella RepID=D1BM63_VEIPT Length = 313 Score = 272 bits (697), Expect = 8e-72, Method: Composition-based stats. Identities = 90/328 (27%), Positives = 138/328 (42%), Gaps = 43/328 (13%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L KP G++S+DA+ +RI R GH+G LDP+A G+LP+ LG+AT+ +Y Sbjct: 1 MDGILPFLKPPGITSHDAVAICRRILKEKRIGHSGTLDPMAYGVLPVFLGKATRLIEYTE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQI-----------------------VEERPVTFSAEQ 107 D DK Y +LG TDT D+ GQ + V S E+ Sbjct: 61 DFDKTYVAECKLGTFTDTEDSSGQTVLPDTNMVLRDGVVLNQAIQSTEISATMVKPSFEE 120 Query: 108 LAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE 167 L + L F G +Q PS YSA+K G + YEYAR+GI V R I + + I + Sbjct: 121 LVSILKKFAGIQDQRPSKYSAIKVNGIRAYEYARKGIPVELPLRQIHIKNIELIAYGFPF 180 Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 + + C+ GTYIR+++ D+ LG + L R V + + E + Sbjct: 181 FTVRVTCTGGTYIRSLLRDICIALGIPGTMTSLARTQVGPFDIGSAKMAEEIM------- 233 Query: 228 QQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT----SGAPLEGLVRV 283 LL+P D+ S V + G + S + R Sbjct: 234 -------LHGKSLLLPTDAAVSHLSKVTVNSVQLRMMVQGKELPIEREFSFTEPDNFYRA 286 Query: 284 TEGENGKFIGMGEIDDEGRVAPRRLVVE 311 FIG+ + + + +E Sbjct: 287 YGPLG--FIGIMRRTNHSLKVEKNIFIE 312 >UniRef50_C7R3E1 tRNA pseudouridine synthase B n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3E1_JONDD Length = 333 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 84/319 (26%), Positives = 146/319 (45%), Gaps = 25/319 (7%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 R RR +G++++DKP GM+S+D + ++R+ + GH G LDP+ATG+L + +G Sbjct: 22 PRQPRRPTAADGIIVVDKPTGMTSHDVVAIMRRLAGTRKVGHAGTLDPMATGLLVVGVGR 81 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIE 120 T+ +L +DK Y RLG T + DADG + + +P + EQL AA G I+ Sbjct: 82 GTRLLHFLTAADKSYTATVRLGVATVSEDADGDVTDTQPCDHVTREQLQAAAARLTGVID 141 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR---------HEGNELELE 171 Q+PS SA+K G++ Y+ R G +V AR +TV + ++ L Sbjct: 142 QVPSAVSAVKIDGRRAYDRVRAGEDVVLPARSVTVSRFDIVDVVDGPPHHGVATKDVLLS 201 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDI 231 + S GTY+R + DL + +G H++ LRR V+++ + ++ L++ + Sbjct: 202 VDVSSGTYVRALGRDLAQIVGTVGHLVALRRTRVAEWTLAEARSVPQLQDTDPTVPLDVM 261 Query: 232 PAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKF 291 + V + + +G + T L G E G+ Sbjct: 262 DLGS----------AAERALRVWRVSEAQAGRLAHGQRLTTE---LSGQYAAV-SEAGEL 307 Query: 292 IGMGEIDDEGRVAPRRLVV 310 + + + +G P + V Sbjct: 308 VAVVQC-GQGVARPVTVFV 325 >UniRef50_Q46JB9 tRNA pseudouridine synthase B n=2 Tax=Prochlorococcus marinus RepID=TRUB_PROMT Length = 314 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 79/315 (25%), Positives = 154/315 (48%), Gaps = 28/315 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G +++DKP G++S+D + ++++++ + GH+G LDP TG+LPI +G+AT+ YL Sbjct: 6 GFVVIDKPSGLTSHDCVNRLRKVFGIKKIGHSGTLDPAVTGVLPIAIGDATRLISYLQG- 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR I +LG T+T D G+I+E + + + L+ FRG+I Q P ++S++ Sbjct: 65 SKAYRGIIQLGATTNTDDMQGEIIESKAWPLITQNYINYLLENFRGEILQKPPIFSSVHI 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLGE 189 +G++ Y+ AR+G + + +T+ +L I + EL +++ CS GTYIR++ D+G+ Sbjct: 125 KGERAYKKARKGEKFDLIPKKVTINKLNLISWSQDKGELLVDVDCSTGTYIRSLARDIGD 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 K+GCG ++ LRR + V L + + ++ + + L + Sbjct: 185 KIGCGGYLKSLRRTKAYNFIENHSVKLPEKSDFYPEGDKPKVLNPNIFFKHLSSFEL--- 241 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV---------------RVTEGENGKFIGM 294 + + +++G + V + + K +G+ Sbjct: 242 ------ISEEEIISWRSGRKISFQNNVKRLKVTKNNEVEDSFIHNNHILVLNKENKILGI 295 Query: 295 GEIDDEGRVAPRRLV 309 +DD + P+ + Sbjct: 296 ACLDDSFAIKPKVVF 310 >UniRef50_B1MZH0 tRNA pseudouridine synthase B n=3 Tax=Leuconostoc RepID=B1MZH0_LEUCK Length = 315 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 88/307 (28%), Positives = 143/307 (46%), Gaps = 22/307 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV++++KP+G++S D + KV+R + GH G LDP +G+L + LG+ATK L Sbjct: 20 VDGVIVINKPRGVTSFDVVAKVRRAIGQKKVGHAGTLDPDVSGVLVVALGKATKLIDELQ 79 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQIPSMYSA 128 KRY LG T+T D G+I+ E+ V +S +Q+ A+ + G I+Q+P MYSA Sbjct: 80 SRPKRYVGDITLGFATETEDLSGEIISEKEITVPYSDQQIDEAIQSLNGSIKQVPPMYSA 139 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELL-----FIRHEGNELELEIHCSKGTYIRTI 183 +K GK+LYEYAR V R R +Y+ H+ + + E SKGTYIRT+ Sbjct: 140 VKVAGKRLYEYARAVETVTRPIREAHIYDFHRTSLVDYAHQQQKFDFEATVSKGTYIRTL 199 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D G +LG A + L R+ S + + + L + + ++P Sbjct: 200 AVDTGRQLGMPATMTRLERVMGSGMTLSQAIELNDVMTW----------PRTAILEKVIP 249 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-GR 302 + ++P+ L KNG + A + + + + G Sbjct: 250 ISKLL-NWPIKPLTDDEWFAVKNGQVITQWPADDN---YLQLTYQDEVKAVYAYNQNTGE 305 Query: 303 VAPRRLV 309 R + Sbjct: 306 WRSRYVF 312 >UniRef50_C0QHM4 TruB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHM4_DESAH Length = 302 Score = 272 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 89/296 (30%), Positives = 135/296 (45%), Gaps = 19/296 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L +DKP G+SS + +VKR N +AGHTG LDP ATG++ + T+ S++LL Sbjct: 3 SGILAVDKPGGISSARLVSRVKRCLNVKKAGHTGTLDPFATGLMLCGINSGTRISRFLLG 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVE----ERPVTFSAEQLAAALDTFRGDIEQIPSMYS 127 KRY LG TDT D G + + +Q+ ++TF G Q P +YS Sbjct: 63 GPKRYTATLCLGVETDTLDCTGVKEQPANPTTVAAITPDQIIRVVNTFVGVQMQQPPVYS 122 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 ALK++G+ LY ARQG V + R I ++ + + +++H S GTYIR++ D+ Sbjct: 123 ALKHEGQPLYRLARQGRPVQKPLRQIEIFSASVEAIDLPHVTIKVHSSTGTYIRSLARDI 182 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G LGCGAH++ LRR + V+ V L L + + ++PM Sbjct: 183 GSALGCGAHLVELRRTESCGFSVDNAVPLSDLEAMDKDEPL----------SRIVPMHEV 232 Query: 248 ASDYPVVNLPLTSSVYFKNGN-----PVRTSGAPLEGLVRVTEGENGKFIGMGEID 298 S P + G + L +G + E D Sbjct: 233 LSFMPSFAADMQMVKRVGFGQDIGLEKLMAPPEDPRSLFVQILDPHGALAAVVEYD 288 >UniRef50_Q0EZ77 TRNA pseudouridine synthase B n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ77_9PROT Length = 307 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 114/314 (36%), Positives = 163/314 (51%), Gaps = 31/314 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIY-----NANRAGHTGALDPLATGMLPICLGEATKF 65 I+GV+ LDKP G +S A+ + R+Y +AGH G LDPLATGMLPI LGEAT++ Sbjct: 2 ISGVVFLDKPYGWTSRQAVNAMIRLYTQPGEKRIKAGHAGTLDPLATGMLPILLGEATRY 61 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 ++ L +DK YRV L +TDT D +G++V + + AL F G IEQ+P Sbjct: 62 AEMGLSADKSYRVSFDLSYQTDTLDCEGEVVARFDGAVNQAAVQTALAAFTGLIEQVPPA 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YSA++ GK+ + AR+G V ARP+TV+ + + E + L++ CSKGTYIR++ Sbjct: 122 YSAIRIDGKRAHAMARKGEAVHIPARPVTVHAITLVAFEFPLVTLQVDCSKGTYIRSLAR 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G LG G V LRRL+ +P MVTLE L+ + ++P+ Sbjct: 182 DIGAALGMGGCVTALRRLSTGGWPEAMMVTLEQLQAQPDSC--------------VLPLA 227 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPV---RTSGAPLEG----LVRVTEGENGKFIGMGEID 298 + P V L + F G + SGAP G VRV GE +G G + Sbjct: 228 QWLREMPGVTLEQDMASRFVQGQRIQLQAASGAPDPGDGQLPVRVFAGE--LLLGTGMLK 285 Query: 299 DEG---RVAPRRLV 309 + P R++ Sbjct: 286 SGHHRTVLHPSRIL 299 >UniRef50_Q4JV56 tRNA pseudouridine synthase B n=5 Tax=Corynebacterium RepID=TRUB_CORJK Length = 308 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 97/322 (30%), Positives = 148/322 (45%), Gaps = 30/322 (9%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 R R +GV+L+DKP G +S+D + K++RI R GH+G LDP+ATG+L + + Sbjct: 4 RSARSVLSRSGVVLVDKPSGPTSHDMVAKLRRIMGTRRIGHSGTLDPMATGLLVVGVERG 63 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT----FSAEQLAAALDTFRGD 118 TKF +++ DKRY RLG T T DA G ++ + +Q+ A RGD Sbjct: 64 TKFLAHVVTHDKRYEATVRLGVATHTDDAQGDVLSTASPQDLQALTEQQVREAFAAQRGD 123 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH------EGNELELEI 172 I Q P+ S++K GK+ +E R+G +V RP+T++ L + + + + Sbjct: 124 IMQRPTSVSSIKIDGKRAHELVREGHDVVLPERPVTIFSLEVLDVVVDDATSCIDARISV 183 Query: 173 HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIP 232 HCS GTYIR I D+GE LG G H+ LRR +V + V TLE L E D Sbjct: 184 HCSSGTYIRAIARDVGEALGVGGHLTQLRRTSVGPFDVSEARTLEQLEEDPSLTLNLD-- 241 Query: 233 AAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFI 292 ++ + + + V G ++ VR +G+ I Sbjct: 242 ------------EAMVRCFDTREISESEGVDLSLGKWLK---PVGNKGVRAAVTPSGQAI 286 Query: 293 GMGEIDDEGRVAPRRLVVEYPA 314 + E + + V PA Sbjct: 287 ALVEEKGK---RASSVFVARPA 305 >UniRef50_Q2G5F3 tRNA pseudouridine synthase B n=8 Tax=Sphingomonadales RepID=TRUB_NOVAD Length = 304 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 146/308 (47%), Gaps = 25/308 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKF 65 ++G ++LDKP + S + VKR + GH G LDPLATG+LPI +GEATK Sbjct: 2 VDGWIILDKPLELGSTQGVAAVKRNLRQAGYGKCKVGHGGTLDPLATGVLPIAVGEATKL 61 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 +LD+ K Y G TD+ D +G IV V + L FR I+Q+P Sbjct: 62 CGRMLDASKVYAFTVAFGTETDSLDLEGGIVATSDVRPPLADVHVTLGAFRDSIDQVPPA 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-----LELEIHCSKGTYI 180 YSAL +G++ Y+ AR G V +R +T++ L G+E L H SKGTYI Sbjct: 122 YSALMVEGRRAYDLARAGETVELPSRRVTIHALTLDSWTGSEGAVETATLTAHVSKGTYI 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R++ D+ LG HV LRRL + +E+ ++L+ L L + A L+ + Sbjct: 182 RSLARDIARALGTVGHVTMLRRLKAGPFAIEQAISLDKLNALGQGAP---------LEHV 232 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKF-IGMGEIDD 299 L+P+++ D P ++L + + G + + G + + E+ D Sbjct: 233 LLPLEAGLVDIPALDLDPEQARAVRQGRVLTGLPFEDG----LYWARLGTVPVALVELSD 288 Query: 300 EGRVAPRR 307 G + R Sbjct: 289 -GNLKVSR 295 >UniRef50_D2R9Q7 tRNA pseudouridine synthase B n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9Q7_GARVA Length = 367 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 155/348 (44%), Gaps = 50/348 (14%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+LL+DKPQG++S+D + + + + R GH G LDP+ATG+L I G AT+ Y+L Sbjct: 6 SGLLLVDKPQGVTSHDIVACARHLLHTKRVGHAGTLDPMATGLLIIGFGNATRLLNYMLG 65 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTF-----------------SAEQLAAALDT 114 +K Y + RLG+ T T DA+G+I+ + + S E++ + Sbjct: 66 HNKTYEAVIRLGEATTTDDAEGEILPDDALNIGPGVHVANKDMSFEKSLSFERIKQVVSE 125 Query: 115 -FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG-------- 165 G I Q P+ +SA+K G++ Y+ AR+G V R I V + Sbjct: 126 NLVGKIMQAPTAFSAIKINGQRAYDLAREGKSVEIAPREIFVSDFSVSNPRITRGVSGKL 185 Query: 166 -NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 ++ ++ CS GTYIR + DLG LG G H+ LRR +V + V L+ ++ E Sbjct: 186 VCDISAKVSCSSGTYIRALARDLGRLLGVGGHLTQLRRTSVGDFSVTDSRVLKLRSQMRE 245 Query: 225 --------QAEQQDIPAAELLDPLLMP------MDSPASDYPVVNLPLTSSVYFKNGNPV 270 Q + +P+ + ++P MD+ + P +++ + + G + Sbjct: 246 FTDRNGVLQHRSKAVPSDDFDANNMLPKICLNMMDAASHSLPTLSIDENQAKDLRFGRWI 305 Query: 271 RT-SGAPLEGLVRVTE-----GENGKFIGMGEIDDE---GRVAPRRLV 309 SG E + E + + E+ ++ P + Sbjct: 306 ELKSGINYENYPAIAYVPNANTEECDVVAVVELTKNIKSNQIKPIVVF 353 >UniRef50_A9BI94 tRNA pseudouridine synthase B n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI94_PETMO Length = 305 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 91/297 (30%), Positives = 146/297 (49%), Gaps = 24/297 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G L+++KP+G++S+D + +++ + + GH G LDP ATG+L + + +ATK ++ + Sbjct: 3 SGFLVINKPKGITSHDVINILRKKFGLQKIGHAGTLDPFATGVLVVGVNKATKLLEFFQN 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA-EQLAAALDTFRGDIEQIPSMYSALK 130 K Y V A LG TDT D +G+I E+ VT L +F G+ Q+P YSA K Sbjct: 63 EKKTYYVKAELGIITDTFDIEGKIQEKNIVTQQHISNLKDICFSFVGEYLQVPPAYSAKK 122 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 Y+GKKLYEYAR+G + + + +Y+L EG E + S GTYIR++I D+G Sbjct: 123 YKGKKLYEYAREGKIINLPPKKVKIYQLSNFSQEGQEFSFFVEVSSGTYIRSLIMDIGYA 182 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA L R+ K+ ++ + LE + ++ MD D Sbjct: 183 LGCGAVTKELCRVKSGKFELKDSILLEEVS-----------------LEKMLKMDEAL-D 224 Query: 251 YPVVNLPLTSS----VYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 P V + N + S V++ + E F+G+G + + Sbjct: 225 LPYVKINNGQLVIKGQQIYKDNVLEFSNFNKNDYVKIYD-EKECFLGIGRAEKKSTF 280 >UniRef50_Q2J732 tRNA pseudouridine synthase B n=1 Tax=Frankia sp. CcI3 RepID=Q2J732_FRASC Length = 327 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 96/311 (30%), Positives = 152/311 (48%), Gaps = 27/311 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++++DKP G +S+D + + +RI R GH G LDP+ATG+L + G T+ +L Sbjct: 33 VDGLVVVDKPAGWTSHDVVARARRILGQRRIGHAGTLDPMATGVLVLGAGRGTRLLGHLA 92 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +DK Y RLG+ T T DA+G VE+RPV A++L A+ G ++Q+P+ SA+K Sbjct: 93 LTDKVYDATIRLGRTTTTDDAEGAPVEDRPVDVDADRLTRAMAALTGVLDQVPASVSAVK 152 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHE----------GNELELEIHCSKGTYI 180 G + Y R G V R +TV+ + G +LE+ + CS GTY+ Sbjct: 153 VGGVRAYARVRAGEVVDLAPRRVTVHRFDLLARRAAGDGAVDPAGTDLEVTVGCSSGTYV 212 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + DLG L CGAH+ LRR AV + + VTL+ EL +A Sbjct: 213 RALARDLGAALDCGAHLTALRRTAVGPFDLAGAVTLDTFAELGPRAVTSLT--------- 263 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 D+ A+ + ++ ++ +G + G P G V G +G + + E + E Sbjct: 264 ----DAVAAGFLRRDVTAEAAADVSHGRRLPPVGRP--GTYGVF-GPDGTVLALVE-ETE 315 Query: 301 GRVAPRRLVVE 311 V + Sbjct: 316 HAVRSLVVFAP 326 >UniRef50_Q8CWM3 tRNA pseudouridine synthase B n=6 Tax=Cyanobacteria RepID=TRUB_THEEB Length = 287 Score = 269 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 100/306 (32%), Positives = 142/306 (46%), Gaps = 24/306 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L+KP G +S+D + +++R R GH G LDP+ATG+LPI LG AT+ YL Sbjct: 1 MFGFLNLNKPAGCTSHDCINELRRRLRLKRIGHGGTLDPMATGVLPIALGAATRLLPYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D K Y R G T T D G+I +E+ + + L F G+IEQ+P YSA+ Sbjct: 61 D-RKAYIGTVRFGMSTTTDDITGEICQEQGASHLTLAAIQEQLPQFIGEIEQLPPAYSAI 119 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDD 186 + G++LY AR G V R +TVY + + EL L I C GTYIR + D Sbjct: 120 QVAGQRLYARARAGEVVSVPPRIVTVYRIEVLHWQPGRYPELTLHITCGSGTYIRALARD 179 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG LG G + L+R+ +E +LE + E L L Sbjct: 180 LGTALGVGGTLAALQRIESGGLRIEESHSLESIA-------------PEHLP--LCSPQE 224 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSG-APLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 S P + L + +G V G P + V VT +G+G I R+ P Sbjct: 225 VLSHLPWLELNAAQLNDWYHGRAVICEGLPPADSCVGVTFAT--ACVGVG-ISGGDRLHP 281 Query: 306 RRLVVE 311 + ++ E Sbjct: 282 KVVLKE 287 >UniRef50_D1N2Y9 tRNA pseudouridine synthase B n=2 Tax=Lentisphaerae RepID=D1N2Y9_9BACT Length = 254 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 91/231 (39%), Positives = 130/231 (56%), Gaps = 1/231 (0%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 +GVLL+DKP+ +S D + V+ +N + GH G LDP ATG+L + LG+ T+ S Sbjct: 11 PPFQTSGVLLVDKPKEWTSFDVVNFVRARFNVPKVGHCGTLDPAATGLLVLVLGKFTQLS 70 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSM 125 DK Y +LG TD+ D DG + E + + EQL A L F G+ Q P M Sbjct: 71 SKFSGEDKIYEATLQLGLETDSCDLDGTVTAEHDWSGVTEEQLRATLAGFVGEQMQTPPM 130 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 SA+K GKKLYE ARQG+EV RE++PIT++ L R E + +HCSKGTY+RT+ Sbjct: 131 VSAVKKDGKKLYELARQGVEVERESKPITIFSLDVTRCELPFCDFTLHCSKGTYVRTLCS 190 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 D G+KLGCG + LRR ++ + VT++ L+ + + + Sbjct: 191 DAGKKLGCGGTLAALRRTRSGQFSLADAVTVDTLKTFEQADLEIHVRQFLY 241 >UniRef50_C7MBA9 tRNA pseudouridine synthase B n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MBA9_BRAFD Length = 318 Score = 267 bits (684), Expect = 2e-70, Method: Composition-based stats. Identities = 101/322 (31%), Positives = 155/322 (48%), Gaps = 31/322 (9%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 + P G +GVLL+DK G +S+D + +V+ + + GH G LDP+ATG+L + +G+ Sbjct: 8 AAPSAPGSAPHGVLLVDKAAGRTSHDVVARVRWLLGTKKVGHAGTLDPMATGLLVLGVGQ 67 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDI 119 T+ YL+ DK Y RLG+ T T D +G+ + E +A +++ L + RGDI Sbjct: 68 GTRLLTYLVGLDKTYEATIRLGRSTTTDDREGEPLGEIVDASGLTAAEISPHLASLRGDI 127 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELL----FIRHEGNELELEIHCS 175 Q+PS SA+K GK+ Y AR G +V ARP+TV E +L+ I CS Sbjct: 128 AQVPSTVSAIKIDGKRAYARARAGEDVQLAARPVTVSRFEAGEARTEGEFLDLDAVIDCS 187 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 GTY+R + DLG LG G H+ LRR AV + V+ + +PA Sbjct: 188 SGTYVRALARDLGAALGMGGHLTALRRTAVGPFSVQDALR---------------VPARG 232 Query: 236 LLDPLLMPMD----SPASDYPVVNLPLTSSVYFKNGNPVRTSGA----PLEGLVRVTEGE 287 D + +P+ A PV+ + + G +R+ A +G V + Sbjct: 233 EGDDVDLPLQGLGAVAARVLPVLEVDAAQAAALGTGQRLRSDAAGDCDEADGPVAALDAA 292 Query: 288 NGKFIGMGEIDDEGRVAPRRLV 309 G+ I + E + G P +V Sbjct: 293 -GRLIAILEREGAG-WRPVLVV 312 >UniRef50_C1ZEI4 tRNA pseudouridine 55 synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEI4_PLALI Length = 313 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 86/306 (28%), Positives = 144/306 (47%), Gaps = 21/306 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L + KP M+S D + K++R + GH G LDPLA G+L I +G AT+ ++++ Sbjct: 4 GFLNIHKPLRMTSRDVVSKIERAVRPLKVGHAGTLDPLAEGVLVIGIGPATRLTEHVQAL 63 Query: 73 DKRYRVIARLGQRTDTSDADGQI-VEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y LGQ T+T DA+GQ+ + + E + L F G I+QIP +SA+ Sbjct: 64 PKGYSATFHLGQTTETDDAEGQLSTQVDTQHLTRELIEQELTHFCGQIQQIPPRFSAVHV 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GK+ Y+ AR G + + + V++L ++ ++EL+I C GTYIR++ DLGEKL Sbjct: 124 AGKRAYDLARSGQDFELTPKTVEVHQLALTKYANPDIELQIECGSGTYIRSLARDLGEKL 183 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 CGA++ L R + + ++ + L+ L + + L PLL+ ++ Sbjct: 184 QCGAYMSALTRTHIGPFHLDSALRLDSL---------PNGFSLADLQPLLLHPMLAFTES 234 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGA----------PLEGLVRVTEGENGKFIGMGEIDDE- 300 + V ++G + P E+ + I + E + Sbjct: 235 QRWVATRQAVVDLQHGKNISGDALQALHSTAESQPEIPAHVCILNEDREVIAVAEFCPQT 294 Query: 301 GRVAPR 306 + PR Sbjct: 295 KLLRPR 300 >UniRef50_P59880 tRNA pseudouridine synthase B n=2 Tax=Prochlorococcus marinus RepID=TRUB_PROMA Length = 313 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 82/315 (26%), Positives = 148/315 (46%), Gaps = 30/315 (9%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L+++KP G++S+D + +++RIY R GH G LDP TG+LPI +G+AT+ +L S Sbjct: 7 GFLVINKPAGLTSHDCVNRLRRIYGIKRIGHGGTLDPAVTGVLPIAIGKATRLLSFLP-S 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ-LAAALDTFRGDIEQIPSMYSALKY 131 K Y +LG T+T D G+ + E E + L+ F+G+I+Q P ++S++ Sbjct: 66 PKTYEGTIKLGISTNTDDLTGETISEHSWDQVKENSILNCLNKFQGEIKQCPPIFSSVHI 125 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGE 189 G++ Y+ AR+G + I +Y + I + ++LE+HCS GTYIR++ D+G+ Sbjct: 126 NGERAYKKARRGEFFELPPKLIKIYRIKLINWNKKDGTIDLEVHCSPGTYIRSLARDIGK 185 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCG + L R + +++ + L L + + + P+++ S Sbjct: 186 KLGCGGALAKLNRTMALGFNIDQAIELPDLDKNNDLNK-----------PMIIDPLKALS 234 Query: 250 DYPVVNL-PLTSSVYFKNGNPVRT-------------SGAPLEGLVRVTEGENGKFIGMG 295 P + L + ++ G + + IG+ Sbjct: 235 HLPSIKLMTIDELSSWRKGKHLILSKSRLKNPLYLIEDDKDIPKTFLTVINNENHLIGLA 294 Query: 296 EIDDE-GRVAPRRLV 309 E ++ P+ + Sbjct: 295 RWHHEPFKIEPKIVF 309 >UniRef50_B0S1E2 tRNA pseudouridine 5S synthase n=2 Tax=Finegoldia magna RepID=B0S1E2_FINM2 Length = 287 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 87/300 (29%), Positives = 151/300 (50%), Gaps = 18/300 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++ V+ + K +G +S D + K I + GH G LDP ATG+L + +G+ TK ++YL+ Sbjct: 1 MDCVINVFKEKGYTSQDVVSICKGILKTKKIGHAGTLDPDATGVLLLGVGKGTKITEYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRG-DIEQIPSMYSAL 129 + K Y G TDT D G + T+ E+L LD G IEQ+P MYSA+ Sbjct: 61 EHGKTYIFEMCFGTSTDTLDLSGNVTGFSEKTYDKEKLKKILDDLNGKTIEQVPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYEYAR+ E+ R++R IT++ + + N +++ CSKGTYIR +I+D+ + Sbjct: 121 KVNGKKLYEYARENKEIKRKSRKITIFNIEPLYILENSCIIKVRCSKGTYIRVLIEDIAK 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL A++ L R+ + ++ V ++ LR+ ++ + + + Sbjct: 181 KLDKLAYMKSLIRVNSGGFDIKDSVKIDSLRKCN-------------IEDVSFSVYESLT 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 + + L + NG + ++ + + +FIG+G I+D + ++ Sbjct: 228 EMKSIELDESLYKKITNGVKINIVHDNIDNIKVIC---KDRFIGIGSIEDH-ILKMNKVF 283 >UniRef50_B6BVJ8 tRNA pseudouridine synthase B n=1 Tax=beta proteobacterium KB13 RepID=B6BVJ8_9PROT Length = 298 Score = 267 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 152/300 (50%), Gaps = 18/300 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G + + KP+G SSN L K+K + +AGH G LDP ATG++PI GEATKFS +L+ Sbjct: 10 SGYISVIKPKGWSSNQLLSKLKWLLQIKKAGHGGTLDPFATGIVPIFFGEATKFSNRVLE 69 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA--EQLAAALDTFRGDIEQIPSMYSAL 129 S+K Y +LG + T D +G+++++ L L+ F G Q P YSAL Sbjct: 70 SNKEYIAELKLGFESSTGDTEGELLKDDSFNEEKLPSNLENILNEFLGIQRQTPPKYSAL 129 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 KY GK YEYAR GIE+P + R I ++ + + +++ ++ CSKGTYIRT+ +D+ + Sbjct: 130 KYNGKPYYEYARAGIEIPIKTREIEIFSIDLVNFTNHQITFQVSCSKGTYIRTLGEDIAK 189 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 K+G ++ L R+ V K +++ + EL + LL P+ Sbjct: 190 KIGTKGYLTNLERIRVGKIKKIDSFSVDQIEELSIEER----------KKLLKPIYQLLE 239 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P + L + NG + A G + FIG+G I D + P RL+ Sbjct: 240 -LPKIELNNNDTKNILNGQNLDI--AIEAGEFLLFF--EKTFIGIG-ISDGEMIKPVRLI 293 >UniRef50_C7LXY6 tRNA pseudouridine synthase B n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LXY6_ACIFD Length = 298 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 98/311 (31%), Positives = 150/311 (48%), Gaps = 30/311 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I G+ L+DKP G +S+D + + +R + R GH G LDP+A+G+L + + AT+ +YL Sbjct: 2 IQGIYLVDKPSGPTSHDVVARARRAFGTRRVGHAGTLDPMASGLLVLGVDRATRLLRYLE 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 KRYR +A LG TDT D DG +V+ RPV + E + A F +Q+P YSAL Sbjct: 62 AQTKRYRAVALLGVATDTDDLDGVVVDRRPVEEPTREAVVTACRRFVPGYDQVPPAYSAL 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---------ELELEIHCSKGTYI 180 G++ Y AR+G +V R + + E+ + +EL + C GTY+ Sbjct: 122 HLDGERAYVRARRGEDVTLPRRRVRIDEIEVGAIWRDGGPGEPQGVRVELTVTCGPGTYL 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R+++ DLGE LG A + LRR V + V + V LE L Sbjct: 182 RSLVRDLGEALGTPATLASLRRERVGRLEVAQAVGLEDLERATP---------------- 225 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 +P+ + V L + F +G + EG V V G G ++G+ D Sbjct: 226 -VPLPLALAGLGRVELDGVDATRFLHGQRIEAPSGLDEGDVLV--GAEGSWLGVASCDGH 282 Query: 301 GRVAPRRLVVE 311 +APR ++V+ Sbjct: 283 -VLAPRVVLVD 292 >UniRef50_Q6MMS4 tRNA pseudouridine synthase B n=1 Tax=Bdellovibrio bacteriovorus RepID=TRUB_BDEBA Length = 308 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 18/307 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+LL+DKP G+SS+D + +++RI + GH+G LDP+A+G++ + E TK SQY+L+ Sbjct: 8 NGLLLVDKPSGISSHDVVARLRRILSTRAVGHSGTLDPMASGLMACLVNEGTKLSQYILE 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK YR+ A+ G RTDT D G+ +E RP + E + + +G++E +YSA+K Sbjct: 68 GDKGYRLRAQFGIRTDTLDTTGETLETRPTDHLTRELILSEALKLQGEMEVEVPIYSAIK 127 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 QGKKLYEYAR EV + + +++ + + E +I CSKG+YIRT ID LG+ Sbjct: 128 VQGKKLYEYARGEQEVTIPKKVMKFWDIEPVEIGSDWAEFDIKCSKGSYIRTWIDLLGKA 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + LRR S Y +++ TLE + V+ L P +PM+ Sbjct: 188 LGCGAAMSGLRRTWSSPYKIDQAQTLEQIEASVKGGS---------LGPAFVPMELALPQ 238 Query: 251 YPVVNLPLTSSVYFKNGNP--------VRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 + + V NG + ++ ++V E G+ + + ++ Sbjct: 239 VKRIRIKGQDKVLLGNGQISHDLRSQLISAFNPDVDQYIQVLAQEGGELLAVIGLEPGRG 298 Query: 303 VAPRRLV 309 RR+ Sbjct: 299 FVLRRVF 305 >UniRef50_C4LJ77 tRNA pseudouridine synthase B n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJ77_CORK4 Length = 351 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 153/350 (43%), Gaps = 53/350 (15%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++++DKP GM+S+D + ++R+ + GH G LDP ATG+L + + TKF +L+ Sbjct: 5 SGIVIVDKPAGMTSHDVVSAMRRLMRTRKVGHAGTLDPAATGVLILGIERGTKFMTHLVA 64 Query: 72 SDKRYRVIARLGQRTDTSDADGQIV------EERPVTF-------------------SAE 106 + K Y RLG T T DA+G+ + EE + E Sbjct: 65 NTKSYDATIRLGFATTTDDAEGEPIPYPDDSEENSIQAAARPLISPSTRERLSLLLSKPE 124 Query: 107 QLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN 166 ++ A + GDI Q PS SA+K G++ Y+ R G EV RP+TV Sbjct: 125 RIDRAREQLTGDIMQRPSSVSAIKVDGRRAYDRVRSGEEVSLPPRPVTVSTFDIRDMRTA 184 Query: 167 -----------------ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYP 209 +L++ + CS GTYIR + DLGE LG G H+ LRR V + Sbjct: 185 TIDSGDNNDGDEDVTVIDLDVTVDCSSGTYIRALARDLGEILGVGGHLTALRRTRVGSFS 244 Query: 210 VERMVTLEHLRE----LVEQAEQQDIPAAELLDPLLMPMDSPA-SDYPVVNLPLTSSVYF 264 ++ TL+ LR+ ++ + + L +D +P+ +L + Sbjct: 245 LDDAKTLDQLRDEQSLAEQRIRDEQLTGETPRASLSYSLDQAITRSFPIRHLRDDEATAV 304 Query: 265 KNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA 314 G + S V G + + + +EG++A + + V PA Sbjct: 305 SMGKRIPASDLKD-----VYAGVSADGHAIALMKNEGKIA-KTVFVARPA 348 >UniRef50_A8RBN0 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBN0_9FIRM Length = 276 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 85/297 (28%), Positives = 134/297 (45%), Gaps = 24/297 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVLL+ K M+S+D + +++ I + GH+G LDP ATG+L + +G A K +L Sbjct: 1 MDGVLLIRKEAEMTSHDVVARLRHILKTKKIGHSGTLDPNATGVLLVLIGRACKVLPFLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D+DK Y LG++T D +++ E+ +T L A L TF G +Q+P M S++K Sbjct: 61 DTDKEYIAELELGKQTLGDDIWSEVLAEKEITPII-DLQALLHTFLGKQKQLPPMLSSIK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYEYAR V R +T YEL + + + + CS GTYIR++ D+ + Sbjct: 120 VNGKKLYEYARNKEAVEVPMRDVTFYELEVL--DEESMRFRVACSSGTYIRSLCRDVAQA 177 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 G + L R V ++ + VTLE + L + + Sbjct: 178 SGNLGCMKSLVRTKVGRFSLADCVTLEDVEAGHFS---------------LHSVAEVLAH 222 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P + NG VR R ++ + + + E D R Sbjct: 223 LPQI--TYEPMKDIYNGKHVRLDCKED----RAVIMDHLEAVAIYERDHGNVFRCVR 273 >UniRef50_D0MI93 tRNA pseudouridine synthase B n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI93_RHOM4 Length = 249 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 133/233 (57%), Gaps = 1/233 (0%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 PR R VLL+DKP+G++S D +++++++ + GH G LDP+ATG+L +G AT Sbjct: 17 PRLPERWDAAVLLIDKPKGITSFDVIRRLRKLLRVRKIGHAGTLDPMATGLLICLIGRAT 76 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQI 122 ++ + + +K Y + RLG+ T + DA+ ++VE R + L F G+I Q Sbjct: 77 RWMTHFMAQEKEYEGVMRLGEITPSYDAETEVVERRSWEHLTDADLERVRHQFVGEIVQQ 136 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 YSA+K +GK+LYE AR G V R +R + +Y + +G ++ + CSKGTYIR+ Sbjct: 137 VPAYSAVKVKGKRLYEQARAGKAVERPSRRVQIYAFELLGRDGADVAFRVRCSKGTYIRS 196 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 ++ D G+ LGCGAH++ LRR Y VE+ TLE L E ++ Sbjct: 197 LVHDFGQALGCGAHLVELRRTRSGPYRVEQAWTLEALAEALQARTSSQPERKS 249 >UniRef50_C0GUB0 tRNA pseudouridine synthase B n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUB0_9DELT Length = 309 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 148/306 (48%), Gaps = 18/306 (5%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 + +GV++L+KP+G +S L K+K + + GH G LDP+A G+L LG+AT Sbjct: 6 RSSKAFHPDGVMVLNKPEGPTSTACLNKIKSRFKLKKLGHAGTLDPMARGVLVALLGQAT 65 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQI 122 K + Y+ + K Y + RLG TDT D G ++EE+ S E + + ++ EQ Sbjct: 66 KLAPYITEGRKTYWGVIRLGVSTDTYDMQGTVLEEKDCSEVSPETIEREIKSWEDLKEQP 125 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 SA K+QGK Y AR G EVP + + I +Y+ + E +E I CS GTY+R+ Sbjct: 126 VPAVSAAKHQGKPFYALARAGQEVPCKTKEIDIYQAQVLNIEPPLVEFRITCSAGTYVRS 185 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + LG ++GC A + L R + +++ V L+ L E + L+ L+ Sbjct: 186 LAHSLGMRVGCCAALAELVREKSHPFSLDQAVDLDTLMEARD------------LNEHLL 233 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP----LEGLVRVTEGENGKFIGMGEID 298 P+ S + V L + +NG P+ AP + + +G + + E Sbjct: 234 PIPRAMSHWEHVRLDPEQEAFVRNGRPIEARNAPRTVDGQHPRALLLSMDGSSLALAEAR 293 Query: 299 D-EGRV 303 +GR+ Sbjct: 294 KTDGRL 299 >UniRef50_D1IN94 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IN94_VITVI Length = 502 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 121/216 (56%), Gaps = 3/216 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+L++KP+G +S K++R+ + GH G LDP+ATG+L +C+G+ATK + Sbjct: 285 VVLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMATGLLIVCVGKATKLVESYQGMV 344 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y I RLG+ T T DAD +++ P E + +F G+I Q+P M+SA+K Sbjct: 345 KGYSGIFRLGEATSTWDADSPVIQREPWEHIKDENIKKTAASFCGEIWQVPPMFSAIKVG 404 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+K+YE AR+G V R I++++ R + L + CSKGTYIR++ D G+ Sbjct: 405 GEKMYEKARRGESVELSPRRISIFKFDIERSLDDRQNLVFRVTCSKGTYIRSLCADFGKA 464 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 LG AH+ LRR ++ Y + + L E + + Sbjct: 465 LGSCAHLAALRRDSIGPYSADDAWEFKDLEEAITKG 500 >UniRef50_B7ICP6 tRNA pseudouridine synthase B n=1 Tax=Thermosipho africanus TCF52B RepID=B7ICP6_THEAB Length = 306 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 88/317 (27%), Positives = 145/317 (45%), Gaps = 30/317 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L KP+G++S+D + ++++ + GH G LDP A G+L I + AT+ +YL Sbjct: 1 MVGFLNAFKPKGVTSHDVIDELRKKLKTKKIGHAGTLDPFAEGVLVIGISGATRLLEYLK 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + KRY V A LG T+T D GQ+ EER S +++ A+ F+G +Q+P YSA K Sbjct: 61 NEKKRYYVKAILGLITETFDITGQVKEERVCQKSNDEIKNAILAFKGKYKQVPPAYSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 Y G++LY+ AR+G + + +YE+ I+ E E+ S GTYIR++ D+G K Sbjct: 121 YNGERLYKLAREGKIISLPPVEVEIYEIENIKIVPPEFSFEVVVSPGTYIRSLCMDIGYK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + L R +V K+ ++ + L E + ++ ++ D Sbjct: 181 LGCGATAVELVRKSVGKFSIKDSINPFELSS-------------EQIVNRILRVEEVL-D 226 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEG-LVR----VTEGENGKFIGMG--EIDDE--- 300 P V + NG R V NG+ + + + Sbjct: 227 LPQVEIYKDYVEKIFNGVQPTMDFVKEIKDDFRKDQDVMLVCNGRLVAIAVSQRTSNFLK 286 Query: 301 ------GRVAPRRLVVE 311 +++ E Sbjct: 287 KNEVRGTVFKLKKVFRE 303 >UniRef50_C2BRN4 Possible tRNA-pseudouridine synthase I n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BRN4_9ACTO Length = 368 Score = 264 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 97/341 (28%), Positives = 161/341 (47%), Gaps = 51/341 (14%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP+G+SSN +++R+ + G+ G LDPLATG+L +G+AT+ QYL Sbjct: 38 GLVIVDKPRGLSSNAVASRIRRLAGQKKVGYAGTLDPLATGILICAIGKATRLLQYLTAH 97 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 DK Y R G TDT DA GQ++ S ++ AAL+ +RG ++QIP+ +SA+K Sbjct: 98 DKVYTARVRFGISTDTDDALGQVLSRAGAALSTAEITAALEPWRGAVDQIPAKFSAIKIG 157 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFI---------------RHEGNELELEIHCSKG 177 GK+ Y+ AR G V + RP+T++ L + + ++ + CS G Sbjct: 158 GKRAYDLARAGKNVEIQPRPVTIHRLELRGAPVLETVAGDDSNPPVQVTDADIVVGCSAG 217 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TY+R++ DLG LG GAH+ LRR++V Y +++ +L + + + L Sbjct: 218 TYVRSLARDLGADLGVGAHLTALRRISVGSYGLDQAHSLSEFET---EVRRYGVLRPLGL 274 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT------------------SGAPLEG 279 D ++ + ++P T G A Sbjct: 275 DAAILGI---FPEFPG---DETQVRALSFGQAPALRDSTHAAPNIPLETANSCPNASDGA 328 Query: 280 LVRVTE------GENGKFIGMGEIDDEGRVAPRRLVVEYPA 314 LV VTE + + + + E + + R+ P + V PA Sbjct: 329 LVAVTEPVTETKAGDKRVVALAERNRD-RLKP--IWVLRPA 366 >UniRef50_B3DZL5 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZL5_METI4 Length = 237 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 134/222 (60%), Gaps = 1/222 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 DI+GVLL+DKP+G +S+D + V++ + + GH G LDPLATG+L + LG+ATK L Sbjct: 2 DIDGVLLVDKPKGFTSHDVVDFVRKKFKIKKVGHCGTLDPLATGLLVLVLGKATKIQDLL 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 + DKRY + RLGQ T T D+DGQ+VEE+PV S E++ D + GD Q+P M SA Sbjct: 62 MSEDKRYEGVLRLGQSTLTQDSDGQLVEEKPVPPLSLEEIKKVFDRYVGDFYQVPPMISA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K G LY+ AR+G E+ R+ R + VY + + + E+ C KG Y+RT D+G Sbjct: 122 IKSHGVPLYKLAREGKEIERKPRLVHVYSYEIKKWDSPFIHFEVVCGKGFYVRTYCHDIG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD 230 + LGCG H+ L RL + + + ++ + L L E + Sbjct: 182 QDLGCGGHLFSLVRLQSGNFKLNQALSFDFLNSLKSPEELLN 223 >UniRef50_B6AR13 tRNA pseudouridine synthase B n=2 Tax=Leptospirillum sp. Group II RepID=B6AR13_9BACT Length = 325 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 147/295 (49%), Gaps = 20/295 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ L+DKP GM+S+D + V++ R GH G LDP+ATG+LP+ +G++T+ ++ + Sbjct: 14 SGMFLVDKPAGMTSHDVVDSVRKNLGFPRVGHGGTLDPMATGVLPVFVGKSTRLAEMIHG 73 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK YR R G TDT D++G+++ E +L L F G Q P MYSA+K Sbjct: 74 YDKTYRFDVRFGVTTDTGDSEGKLLTEIKFDQLDRVKLKGVLQDFTGVRLQKPPMYSAVK 133 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLG 188 G LY AR+GIEV REAR I +Y L + +G + CSKGT++RTI +++G Sbjct: 134 KNGTPLYRLARKGIEVEREARRIEIYSLEMLTVSPDGKTASFRVKCSKGTFVRTIAEEIG 193 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 E +G G HV+ L R + VE V+L L + E L L Sbjct: 194 EAIGLGGHVVSLCREEFGHFRVEDAVSLGDL---------ISMDMEEGLSSCLWSPSRIL 244 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGA-------PLEGLVRVTEGENGKFIGMGE 296 +P + + G + L +VR+++ GK I +G+ Sbjct: 245 ESFPEIRILDAHLPDIYRGARIPAFQIYRTSGLFNLSEMVRISD-RKGKCIAVGK 298 >UniRef50_Q0WVR7 tRNA synthase-like protein n=10 Tax=Magnoliophyta RepID=Q0WVR7_ARATH Length = 540 Score = 263 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 4/225 (1%) Query: 6 RRGRDING-VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 R NG VLL++KP+G +S K++R+ + GH G LDP+ATG+L +C+G+ATK Sbjct: 314 PRWDGPNGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 373 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIP 123 K Y + RLG+ T T DAD +++ + + AL +F G+I Q+P Sbjct: 374 VVDRYQGMIKGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVP 433 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIR 181 M+SA+K G+K+YE AR+G V R I++++ R + L + CSKGTYIR Sbjct: 434 PMFSAIKVGGEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIR 493 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 ++ DL + LG AH+ LRR ++ +Y L + + Sbjct: 494 SLCADLAKALGSCAHLTALRRDSIGEYSANDAWEFNELEAAITKN 538 >UniRef50_C2CXC9 Possible tRNA-pseudouridine synthase I n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CXC9_GARVA Length = 400 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 146/355 (41%), Gaps = 67/355 (18%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+LL+DKP+G++S+D + + + + R GH G LDP+ATG+L + G AT+ YLL Sbjct: 10 GILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGH 69 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-------FSAEQLAA----ALDTFRGDIEQ 121 DK Y + RLG+ T+T DADG +V + E L F G I Q Sbjct: 70 DKTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQ 129 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---------ELELEI 172 P+ +SA+K G + Y+ AR+G +V E R + +++ + N ++ I Sbjct: 130 TPTAFSAIKINGVRAYDLAREGKDVHLEPREVVIHDFSLLDARFNVGVSGAKVVDVRASI 189 Query: 173 HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTL---------------- 216 CS GTYIR + DLG LG G H++ LRR + ++ VE L Sbjct: 190 SCSSGTYIRALARDLGRVLGVGGHLVSLRRTRIGEFSVEDDRVLKLETRIRTFTDKNGVT 249 Query: 217 ------------EHLRELVEQ----------------AEQQDIPAAELLDPLLMPMDSPA 248 + + + ++ +L + +L +S Sbjct: 250 QTRAKAVVADRHDSVSDYFSDSVSNSSVACDLSGDSSCKKSAQKNYDLQNRVLSMFESAK 309 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG---LVRVTEGENGKFIGMGEIDDE 300 V + + + G + + V+ + E + + E ++ Sbjct: 310 LTMQTVEISENQAKDLRFGRKIVIPAISEKNTIAYVKAEKDEQNDVVAVLETAEK 364 >UniRef50_A1R520 tRNA pseudouridine synthase B n=14 Tax=Actinomycetales RepID=TRUB_ARTAT Length = 311 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 86/314 (27%), Positives = 144/314 (45%), Gaps = 29/314 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++++DKPQG +S+D + +++R+ + GH G LDP+ATG+L + + +AT+ Y++ Sbjct: 2 LSGLVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIV 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y RLG+ T T DA+G++ E + + +A + G I+Q+PS SA+ Sbjct: 62 GTSKTYTATIRLGETTITDDAEGEVTEARTAAHITDDAVAVGVAALTGPIQQVPSSVSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH------EGNELELEIHCSKGTYIRTI 183 K G++ Y R G EV ARP+T++ ++++ + CS GTYIR + Sbjct: 122 KVNGERSYARVRSGEEVKLAARPVTIHRFDVHSITRIDGGRVVDVDVTVECSSGTYIRAL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DLG LG G H+ LRR V Y +++ TLE L E +E E Sbjct: 182 ARDLGNALGIGGHLTALRRTQVGPYSLDQARTLEELAEELEVLEMSL------------- 228 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRT------SGAPLEGLVRVTEGENGKFIGMGEI 297 + S P L + G + A +G+ + + Sbjct: 229 --AARSLMPNRELSEQETTEISFGRRIAAGPGAGTPDAATAEKPAAAFAPSGELVALL-A 285 Query: 298 DDEGRVAPRRLVVE 311 D P + Sbjct: 286 DTGSFAKPVLVFAP 299 >UniRef50_Q72ER4 tRNA pseudouridine synthase B n=10 Tax=Desulfovibrionales RepID=TRUB_DESVH Length = 304 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 88/297 (29%), Positives = 140/297 (47%), Gaps = 20/297 (6%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 +G+L+LDKP G SS + KVKR + GH G LDP+A G+L + LG ATK S Sbjct: 2 PVQQHGLLVLDKPSGPSSAQCISKVKR-LGQKKIGHAGTLDPMAGGVLLVLLGHATKISG 60 Query: 68 YLL-DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSM 125 +L+ D +K Y RLG+ TDT DA+G + P + + A +D++ G EQ Sbjct: 61 HLMADGEKVYAGTLRLGETTDTWDAEGTVTATAPWHHVTEADVRAIVDSWLGSSEQEVPP 120 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YSA K+QG+ LY+ +R G E P + + + + + + + + CS GTYIR++ Sbjct: 121 YSAAKHQGQPLYKLSRAGRETPVKTKTVEISLAEVVWCDLPHVRFRVRCSSGTYIRSLAH 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 LG +LGCGA + L R + ++ TL+ + L ++P+ Sbjct: 181 SLGIRLGCGAVLTELTREYSHPFGLDMAHTLDAVLA-----------EPGRLAERVIPIT 229 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVR------TSGAPLEGLVRVTEGENGKFIGMGE 296 +P V + L +NG P+ +EG+ + + + E Sbjct: 230 HALPHWPKVGISLQQEASVRNGIPLPYQPEMVADMPFMEGVKAILLDTREVPVALVE 286 >UniRef50_Q6MD66 tRNA pseudouridine synthase B n=15 Tax=Chlamydiales RepID=TRUB_PARUW Length = 262 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 84/217 (38%), Positives = 124/217 (57%), Gaps = 2/217 (0%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-AT 63 + G+LL++KP+G +S ++ +++ + GH G LDP ATG++ + +G T Sbjct: 34 STPPSHLEGILLINKPKGKTSFSLVRDLRKRLGVKKIGHAGTLDPFATGVMVMLVGRNYT 93 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIP 123 + S L SDK Y A LG TD+ D +GQ++ + + + EQ+ A F+G IEQ+P Sbjct: 94 RLSDQFLLSDKEYIAEAYLGVVTDSYDCEGQVLSQSNIIPTLEQIKEAFSLFQGKIEQVP 153 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 M+SA K QGKKLYE ARQGI V R+ I+++ + + L I CSKGTYIR+I Sbjct: 154 PMFSAKKQQGKKLYELARQGIVVERQPVKISIHT-ELLSYNYPYLNFRIECSKGTYIRSI 212 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 DLG KLGCGAH+ L R + +E + + Sbjct: 213 AYDLGTKLGCGAHLSNLTRTRSGAFCLENCLNGAEIH 249 >UniRef50_C1SPK2 tRNA pseudouridine 55 synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPK2_9BACT Length = 297 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 78/292 (26%), Positives = 137/292 (46%), Gaps = 15/292 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVL + K + M+S D ++ V+RI + GH G LDP+A G+LP+C+G ATK Y++ Sbjct: 1 MNGVLNIYKEKDMTSFDVVKAVRRITGVKKCGHLGTLDPMAEGVLPVCVGYATKLVDYMM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +DK Y +LG TD+ D+ G ++E+ + E++ L +F G+ E +SA+ Sbjct: 61 AADKEYVAQFKLGCSTDSYDSTGNVLEKCEDIKPDYEEVEKVLKSFVGEPELTIPAFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GK+ YE AR+G R + + ++ + +E E + C KGTY+R++I + G Sbjct: 121 KINGKRAYELARKGEIEDAGKRVMKINDITLMGYEYPEGMFRMSCYKGTYVRSVIHEAGL 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG + L R + + L L EL ++ E + +D+ + Sbjct: 181 ILGTYGVMSGLIRTVSGNFDHKTAYKLGELEELKDKGELAGAFTSV--------VDA--T 230 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSG----APLEGLVRVTEGENGKFIGMGEI 297 + + + +NG ++ E + G+ + E Sbjct: 231 GWGTAVVHRDAVRLVQNGVSIKRHNYVKLPDGESDMYFMATPEGELLAFAEY 282 >UniRef50_A0QIX1 tRNA pseudouridine synthase B n=93 Tax=Actinomycetales RepID=TRUB_MYCA1 Length = 309 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 96/307 (31%), Positives = 153/307 (49%), Gaps = 14/307 (4%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP GM+S+D + + +RI+ R GH G LDP+ATG+L + + ATK L + Sbjct: 5 GLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAA 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y RLGQ T T DA+G +V +++ + AA+ RGDI Q+PS SA+K Sbjct: 65 AKSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIIDDL 187 GK+ Y+ R+G V ARP+ + E ++++E+ CS GTY+R + DL Sbjct: 125 AGKRAYKLVREGQAVELPARPVRIDRFEVRDLRAAGECVDVDVEVDCSSGTYVRALARDL 184 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G LG G H+ LRR V ++ +E+ L+ L E + D + + D Sbjct: 185 GAALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSYSLDEACLLIFGRRDLSADEA 244 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 + L ++ + A ++G+ +G+ I + + DEG R Sbjct: 245 EAAGNGRALAAAAAGN-----GRALAAAGIDGVYAA-CAPDGRVIAL--LRDEG-ARTRS 295 Query: 308 LVVEYPA 314 +VV PA Sbjct: 296 VVVIRPA 302 >UniRef50_B9XFC5 tRNA pseudouridine synthase B n=1 Tax=bacterium Ellin514 RepID=B9XFC5_9BACT Length = 236 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 1/229 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G LL+DKP G +S+D + ++R + + GH G LDP ATG+L I LG TK S+ L+ Sbjct: 8 DGALLIDKPVGYTSHDVVDAIRRRFQIKKVGHCGTLDPNATGLLIIVLGRGTKLSERLMS 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSALK 130 SDK Y + G+ TD+ DADG++V PV + +L F GD Q+P M SA+K Sbjct: 68 SDKVYEGTIKFGETTDSYDADGELVTSLPVPPMTLGELNETAAAFVGDQMQVPPMVSAIK 127 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G LY+ AR+G+EV RE R I +Y F + + +KGTY+R++ DLG+K Sbjct: 128 KGGVPLYKLARKGVEVEREPRFIHIYNFRFAEYNEPIGRFRVAATKGTYVRSLAHDLGQK 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 LGCG H+ LRR K+ V + L+ EL ++ + L Sbjct: 188 LGCGGHLATLRRTVSGKFDVANAIRLDQALELSAAELEKRVIPFLKLAA 236 >UniRef50_UPI000050FC6C tRNA pseudouridine synthase B n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FC6C Length = 305 Score = 260 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 83/309 (26%), Positives = 141/309 (45%), Gaps = 26/309 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV++ DKPQG++S+ + +++R Y + GH G LDP+ATG+L + LG TK Y+ Sbjct: 8 GVIVCDKPQGLTSHGVVSRIRRWYGTRKVGHAGTLDPMATGVLVLGLGRGTKLLGYITGV 67 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV----TFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y RLG T T DAD + + + +A + RG I+Q+PS SA Sbjct: 68 SKTYLATIRLGSATPTDDADSEPDLFAEPAALSAVTDDGIAHGVSALRGSIDQVPSAVSA 127 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE------GNELELEIHCSKGTYIRT 182 +K G++ Y R G +V +AR + + + + ++++E+ CS GTY+R Sbjct: 128 IKVNGQRSYARVRAGEDVVLKARRVEISDFTILATRYSVAQGHIDVDVEVDCSSGTYVRA 187 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + DLG LG H+ LRR V + ++ V + ++ A Sbjct: 188 LARDLGGSLGVYGHLTALRRTRVGAFSLDEAVMIPDDLDIEAPALTSL------------ 235 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG-LVRVTEGENGKFIGMGEIDDEG 301 + + P V++ + G + T +P +G V V GE + + + E+ G Sbjct: 236 -AEVARTLLPTVHVDSVEAKALMQGKTIGTDRSPDQGNDVAVIVGE--ELVSIAEVRAGG 292 Query: 302 RVAPRRLVV 310 + + Sbjct: 293 VLKSQTAFA 301 >UniRef50_B0BXR2 tRNA pseudouridine synthase B n=16 Tax=Rickettsia RepID=TRUB_RICRO Length = 345 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 81/284 (28%), Positives = 129/284 (45%), Gaps = 13/284 (4%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 N L + KP+G+SS + VK+I + GH G LD A G+LP +GEATK + L+D Sbjct: 3 NYWLNIYKPRGISSAQLVSIVKKILGKTKIGHAGTLDVEAEGILPFAVGEATKLIRLLID 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K Y + G +T++ D G+++ + S E+ A F G + QIP +SALK Sbjct: 63 ARKTYIFTVKFGMQTNSGDCAGKVIATKDCVPSQEEAYAVCSKFIGSVTQIPPAFSALKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELE--IHCSKGTYIRTIIDDLGE 189 G + Y+ AR+ +V + R IT+Y+L + + CSKGTYIRT+ +DL Sbjct: 123 NGVRAYKLAREEKKVELKPRNITIYDLKCLNFDEKNATATYYTECSKGTYIRTLAEDLAL 182 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 L VI LRR V + E + + + D L+ + +++ Sbjct: 183 SLQSLGFVIELRRTQVGIFKEENAIRI----------KSPDEITKNALEAKSIKIEAILD 232 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIG 293 D V++ + + K G + +F G Sbjct: 233 DILVLDATDSQAQQIKYGQKC-LFNYEKDFRHLAKFAYREEFKG 275 >UniRef50_D0WDY9 tRNA pseudouridine synthase B n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WDY9_9ACTN Length = 315 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 94/322 (29%), Positives = 156/322 (48%), Gaps = 31/322 (9%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R ++ V+ +DKPQGMSS+DA+ +++R++ R GH G LDPLATG+L +C+G A++ Sbjct: 2 KRGQSGLSLVIGIDKPQGMSSHDAVNRIRRMFGERRVGHMGTLDPLATGVLAVCVGPASR 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ---LAAALDTFRGDIEQ 121 YL + DK Y G +TDT DA G+++ + V L + G Q Sbjct: 62 LDAYLTNHDKTYEARIAFGAQTDTDDAAGEVIRQAAVAPELSDATFAQEYLASIVGPRMQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-----LELEIHCSK 176 +P YSA+K G K YE AR+G V EARP+ V + + ++ ++ + SK Sbjct: 122 MPPAYSAIKKDGVKAYEAARRGKAVELEARPVEVRAADLLAIDTDDAGRVFWDVRLEVSK 181 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTYIR+I D G +LG AH+ LRR+ + +E V+LE Sbjct: 182 GTYIRSIARDAGLELGSAAHLSALRRVRAGRLGIEACVSLEE-------------AGRSG 228 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL------VRVTEGENGK 290 + P+D +P + + + + + G P+ + + + +R + + Sbjct: 229 IAAACDPVD--LLGFPALEVDVRMAESIRCGRPLPLAALDPDAVHAHELGMRCIVFRD-E 285 Query: 291 FIGMGEIDD-EGRVAPRRLVVE 311 + + E D G+ PR + + Sbjct: 286 LVALYETDPFRGQAHPRCVFSQ 307 >UniRef50_B6GCN3 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GCN3_9ACTN Length = 316 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 87/322 (27%), Positives = 133/322 (41%), Gaps = 30/322 (9%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +R+ ++N +L +DKP G++S+D + +V+R N R GH G LDPLA+G++ + +G+A Sbjct: 1 MAKRKPSELNLLLAVDKPVGITSHDVVSRVRRALNERRVGHAGTLDPLASGVMIVGVGQA 60 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDI 119 T+ + KRY G T T DA+G+ V+ S L F G+ Sbjct: 61 TRLLGRITLERKRYLARIMFGCETTTDDAEGEPTRIADVSDDVLSPLFAKGVLREFVGEQ 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----LELEIHCS 175 EQ+P YSA+ G + Y+ AR G +V AR I VY + + + S Sbjct: 121 EQVPPAYSAISVDGVRSYKRARAGEDVELPARTIEVYAADLVAVDEVDGRAVWTASFDVS 180 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 KGTYIR++ D+G G AHV LRR A +E L + A Sbjct: 181 KGTYIRSLARDIGRAAGSAAHVADLRRTASGPVTSGMCARIEDLS--------PEHAHAA 232 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV--------TEGE 287 LDP + PV L NG + G V Sbjct: 233 ALDP------ARVLGIPVRELTDDELAAVLNGRAIPCGSPRAAGEPFVPGDAASTYALVN 286 Query: 288 NGKFIGMGEIDDEGRVAPRRLV 309 +G+ + + + + + Sbjct: 287 DGRLRAIAAREGD-YLRMETVF 307 >UniRef50_Q1AW51 tRNA pseudouridine synthase B n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AW51_RUBXD Length = 265 Score = 259 bits (662), Expect = 9e-68, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 18/280 (6%) Query: 32 VKRIY-NANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSD 90 +KR+ + GHTG LDPLA+G+L + +G AT+ S+Y+ DK Y AR G +DT D Sbjct: 1 MKRLLPRRTKVGHTGTLDPLASGLLVLLVGRATRLSRYVTGLDKTYVATARFGAASDTLD 60 Query: 91 ADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREA 150 ADG+I+E +L AL F G+I Q+P M SA++ G++LYE R+G+EV RE Sbjct: 61 ADGEILENAGPVPDEAELRRALPRFVGEIRQLPPMASAVRVGGRRLYELHRRGVEVEREP 120 Query: 151 RPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV 210 R + V+ L + + + CS GTY+RT+I DL LG A++ LRR V V Sbjct: 121 RLVRVHSLELLSFDPPAATFAVSCSSGTYVRTLISDLAASLGTAAYLTALRRTRVGHLRV 180 Query: 211 ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPV 270 E + + L + ++P + P V + +G + Sbjct: 181 EDALPPQDL-------------DPSTIHHRIIPPSGVLAHLPAVEADEGRARAVASGRGL 227 Query: 271 RTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 R +G LEG RV G+ + + + GR P ++ Sbjct: 228 RVAG-GLEGSFRV--ERGGELLAVYRAEG-GRARPEVVLC 263 >UniRef50_Q2NIZ2 tRNA pseudouridine synthase B n=7 Tax=Acholeplasmataceae RepID=TRUB_AYWBP Length = 283 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 79/301 (26%), Positives = 148/301 (49%), Gaps = 20/301 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG L++KP+ M+S+D + ++K+ ++ ++ GHTG LDPLA+G+L +C+G+ATK + Sbjct: 1 MNGFFLVNKPEKMTSHDVVFQIKKKFHFDKVGHTGTLDPLASGLLIVCVGKATKLAFLFD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RGDIEQIPSMYSAL 129 K Y+ + DT D G++++ + + + + + +F + QIP M+SA+ Sbjct: 61 KLSKTYQGTFLFNKHYDTLDVKGKLLDTKNIPLNDFAIQTSFASFHQKKYWQIPPMFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR-HEGNELELEIHCSKGTYIRTIIDDLG 188 K +G+K+Y ARQ V R + ++ ++++ +H SKGTYIR++ DL Sbjct: 121 KIKGQKMYRLARQNQVVDIPPREVFIHHFEKKSLFCHDQVDFLVHVSKGTYIRSLARDLA 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +L ++ L+R A+ + ++ T+E+L L+ L++ Sbjct: 181 LQLNTYGALLRLQRTAIGTHLLQNAKTIENLE----------------LNDLILD-SIFF 223 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 + Y + L KNG + + V + N F+ +I DE + PR Sbjct: 224 ASYDELILNDYLIKLVKNGTYLDQRQIITQKPFIVKDS-NKNFVAYYDILDENKYYPRYF 282 Query: 309 V 309 Sbjct: 283 F 283 >UniRef50_C5NXZ4 tRNA pseudouridine synthase B n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXZ4_9BACL Length = 307 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 90/300 (30%), Positives = 151/300 (50%), Gaps = 24/300 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + K +G++S+D + KV++I + GH+G LDP G+L + LG ATK S Y +D Sbjct: 4 GILPIYKERGVTSHDVVFKVRKILQMKKIGHSGTLDPEVDGVLLLLLGGATKVSDYAMDL 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR LG +T T D G+IV++ V + ++L L + G+IEQ P +YSA+K Sbjct: 64 GKSYRAEVCLGLKTTTEDLTGEIVDDCKVSNINIDELKEILSSMIGEIEQTPPIYSAIKV 123 Query: 132 QGKKLYEYARQGI-EVPREARPITVYEL------LFIRHEGNELELEIHCSKGTYIRTII 184 G+KLYEYAR+G +V R + +Y++ + + + ++I C KGTY+RTI Sbjct: 124 NGRKLYEYARRGQFDVEIPTRKVNIYDITFIENSEYYKDDRFYFSIDISCGKGTYVRTIA 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +GEKL + + L R + +E + L + + V+ L+ L+ Sbjct: 184 TSIGEKLNLPSTMSKLTRTRSGEITLENCLKLSEVEQKVQDGS---------LEQSLLRK 234 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL----EGLVRVTEGENGKFIGMGEIDDE 300 + ++ V +P + NG R + P +G+V + I + + D+ Sbjct: 235 EYALEEFQFVEIPKFRAKQVMNGLRFRKNQFPDYDFTDGIVFTY---ENEAIAIYHLKDK 291 >UniRef50_B3DQF2 tRNA pseudouridine synthase B n=6 Tax=Bifidobacterium RepID=TRUB_BIFLD Length = 387 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 152/381 (39%), Gaps = 86/381 (22%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L++DKPQG++S DA+ V+ + + GH G LDP+ATG L I G AT+ ++ Sbjct: 7 SGLLIIDKPQGVTSFDAVAAVRGALHIKKVGHAGTLDPMATGTLVIAFGHATRLLNAIVA 66 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDT----------------- 114 DK Y RLG RT T DA+G+++ + + L+A L Sbjct: 67 HDKTYEATIRLGLRTTTDDAEGEVLVDDEARSRWQTLSAQLTEGGQSGEPTALPTASWQD 126 Query: 115 ---------FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG 165 F GDIEQ+P+ +SA+K G++ Y+ AR+G +V + RP+T+ E + Sbjct: 127 LLTRTIATNFTGDIEQVPNTFSAIKINGQRAYDLAREGKDVELKPRPVTISEFTVLDIRS 186 Query: 166 N-----------------------ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRR 202 ++++ I CS GTYIR + DLG++LG G ++ LRR Sbjct: 187 GFVAGEQTAEPLREDANTGAIPALDVDVRISCSSGTYIRALARDLGKELGVGGYLTRLRR 246 Query: 203 LAVSKYPV-ERMVTLEHLRELVE---------------------------------QAEQ 228 V ++ + + L +++ + Sbjct: 247 TRVGRFALPDDASGLIAPEAMLDTRTHTVTAHTDQKTFTNREGQTVTRNKCVLDTPEGLA 306 Query: 229 QDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGEN 288 D LLD L + P +++ + + G + + + Sbjct: 307 GDERRNWLLDHALTMEQAARGAMPALDITPEEASELRFGRRIER---TISEPTAAIVPQT 363 Query: 289 GKFIGMGEIDDEGRVAPRRLV 309 + E + + P + Sbjct: 364 HDVAAIIERANAHQAKPVTVF 384 >UniRef50_C7MNL5 tRNA pseudouridine 55 synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNL5_CRYCD Length = 340 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 132/281 (46%), Gaps = 23/281 (8%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M + RR + V+ +DKP GM+S+D + +++RIY R GHTG LDP ATG L +C+G Sbjct: 1 MGK-RREASGYSLVIGVDKPAGMTSHDVVDRIRRIYGERRVGHTGTLDPAATGALAVCVG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFS---AEQLAAALDTFRG 117 AT+ ++L+ K Y G TDT DA G+++E+ PV S + A D+ G Sbjct: 60 PATRLDRFLVGHRKEYEFTVVFGAATDTDDAQGRVIEQLPVPVSVGNEAAVRAYFDSQLG 119 Query: 118 DIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----LELEIH 173 Q P YSA+K GKK Y AR+G + RPI +Y+L + E E + Sbjct: 120 TQHQRPPAYSAIKVNGKKSYAEARRGNVIELALRPIEIYKLDLVGFEQTEDMVSWCVRAE 179 Query: 174 CSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPA 233 S GTY+R+I D G G AHV LRRL VE +TL+ + + Sbjct: 180 VSAGTYVRSIARDAGLAFGTCAHVGSLRRLRSGSLAVEDCLTLDEIERNPH---TSALDP 236 Query: 234 AELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG 274 LL+ ++ + +G P+ Sbjct: 237 LTLLNRRIL------------FAGDGQANDVAHGRPLVIDN 265 >UniRef50_B9FM24 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9FM24_ORYSJ Length = 525 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%) Query: 19 KPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRV 78 KP G +S K++R+ N + GH G LDP+ATG+L +C+G+ATK K Y Sbjct: 314 KP-GWTSFTVCGKLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSG 372 Query: 79 IARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLY 137 + RLG+ T T DAD +++ P E + +FRG+I Q+P M+SA+K G+K+Y Sbjct: 373 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKVGGEKMY 432 Query: 138 EYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDLGEKLGCGA 195 + AR+G V R I++++ R + L + CSKGTYIR++ DLG+ LG A Sbjct: 433 DKARRGETVELSPRRISIHQFDIERSLEDRQNLIFRVICSKGTYIRSLCADLGKALGSCA 492 Query: 196 HVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 H+ LRR ++ + V + L E + + Sbjct: 493 HLTALRRDSIGDFSVNDAWSFAELEEQITKG 523 >UniRef50_D1AL32 tRNA pseudouridine synthase B n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL32_SEBTE Length = 280 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 91/296 (30%), Positives = 151/296 (51%), Gaps = 24/296 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++LL+K + +SS A+ +K + GH G LDPLA G++ + + ATK S LL Sbjct: 1 MDGIILLNKEKDISSFKAINNLKYKLKLKKVGHAGTLDPLAEGLMIVLVNNATKLSDMLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG TDT D G+ + ++ E++ L+ F+G+ EQ P MYSA Sbjct: 61 KQSKEYYAECELGYETDTYDCTGEKTQVYDGEISVDKEKITDILEDFQGEYEQTPPMYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K GKKLY+ AR+GIEV R+++ + + + I GN++ IH GTYIR++I D G Sbjct: 121 IKINGKKLYDLARKGIEVERKSKTVNIEYINRISINGNKIGFYIHAGSGTYIRSVIQDFG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +LG A + L R + K+ +E + + + D +L+ ++ Sbjct: 181 RRLGTYATMTKLIRTKIGKFSLENAYREKEISD----------------DSVLLSVEKIF 224 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 DYP +++ KNG ++ + G + NG++ G+G I +G + Sbjct: 225 -DYPALDVTDEECFKMKNG--IKLNKEIPVGYYSIYN--NGEYKGIG-ISADGILK 274 >UniRef50_A4XL67 tRNA pseudouridine synthase B n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=TRUB_CALS8 Length = 287 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 76/294 (25%), Positives = 144/294 (48%), Gaps = 23/294 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+LL+DKP G++S+D ++ V++++ + GH G LDP A+G+L + +GEATK S + Sbjct: 1 MNGILLVDKPVGLTSHDVVEYVRKLFKT-KVGHCGTLDPFASGLLVLLIGEATKLSSFFT 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y + G +TDT D G++ + ++ L +G++E +YSA K Sbjct: 60 QTKKTYIATMQFGIKTDTLDITGKVQLRNNIFIEQNEIEDCLKDLKGEVELSVPIYSAKK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +G+KLYEYAR+GI++ +Y + I + + ++ CS GTYIR++ +++ +K Sbjct: 120 VKGRKLYEYAREGIDIEIPKIKSIIYSIEMINYCYPYMTFKVECSHGTYIRSLAEEIAKK 179 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L A ++ LRR + ++ +L+ + E ++P+++ Sbjct: 180 LSTVATLVQLRRAKNGVFDIKAAFSLDFISE-----------------DSIIPLENLI-- 220 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 + + + NGNP+ +R+ + F + D Sbjct: 221 LNEIIVNESVYKKLINGNPLTRKDIKE---IRLNDSLFEDFYKISMKDAFFVYK 271 >UniRef50_C8WI31 tRNA pseudouridine synthase B n=2 Tax=Coriobacteriaceae RepID=C8WI31_EGGLE Length = 340 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 104/332 (31%), Positives = 150/332 (45%), Gaps = 25/332 (7%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R +R ++ V+ ++KP GMSS+D + + + I+ R GHTG LDP+ATG+LPIC+G Sbjct: 1 MPRVKRGLSGLSLVVGVNKPAGMSSHDVVNRCRSIFGERRVGHTGTLDPMATGVLPICVG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRG 117 AT+ YL DKRYRV G TDT DA G +V V E AA + + G Sbjct: 61 PATRLGAYLTGHDKRYRVSIAFGAGTDTDDAAGTVVRTGEVPDRVLDPEFAAAFVASLVG 120 Query: 118 DIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE------LELE 171 +Q+P YSA+K GKK YE AR G + R I VY+ + + ++ Sbjct: 121 RRKQMPPAYSAIKVNGKKSYEAARAGNIIDLAPRDIEVYDARLLGVHEGDGEELPSWDVS 180 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDI 231 SKGTYIR++ D G LGC AHV L R + +E V+LE L +L ++A + Sbjct: 181 FEVSKGTYIRSLARDAGVALGCPAHVAALERTELGLLTLEECVSLETLADLKDRAALDPV 240 Query: 232 PAAELLDPL----LMPMDSPASDYPVVNL-------PLTSSVYFKN--GNPVRTSGAPLE 278 + L + + P L ++ G Sbjct: 241 RLLGVRFSYAQGDLAKKVANGAQLPAAELPLFERRRTTSAIEMCACTAGVRESCEPPRDG 300 Query: 279 GLVRVTEGENGKFIGMGEIDDE-GRVAPRRLV 309 LV V + K + + D+ R R + Sbjct: 301 ELVAVLT--DNKLVALYAYDEGRARFETRCVF 330 >UniRef50_B2UQ50 tRNA pseudouridine synthase B n=3 Tax=Verrucomicrobia RepID=B2UQ50_AKKM8 Length = 244 Score = 254 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 132/232 (56%), Gaps = 1/232 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVLL+DK + M+S+D + +R + GH G LDP+ATG+L + +G+ATK L+ Sbjct: 11 SGVLLIDKARDMTSHDVVAIARRSLGIKKIGHCGTLDPMATGLLMLVVGKATKLQDKLMC 70 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y LG T + DA G+IV E V + + + A D F G EQIP M SA+K Sbjct: 71 EHKEYAGTLMLGVETSSQDAMGEIVAEYSVDGVTEQAVREAFDRFDGAFEQIPPMVSAIK 130 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G LY+ AR+G E+ RE RP+ V+ R E++ + CSKG Y+R+ D+G+ Sbjct: 131 KDGVPLYKLARKGQEIVREPRPVEVFGHGISRVAIPEVDFTVQCSKGFYVRSYAYDIGKA 190 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 LGCGAH+ LRR + ++R +T++ L+ + + + + + L +L+ Sbjct: 191 LGCGAHLSALRRTRSGSFTLDRAITVDTLKTAPREELFRAMLSLKELADILI 242 >UniRef50_C7N8V4 tRNA pseudouridine synthase B n=1 Tax=Leptotrichia buccalis C-1013-b RepID=C7N8V4_LEPBD Length = 355 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 169/343 (49%), Gaps = 47/343 (13%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++LL+K +G+SS A+ ++KR A +AGH G LDP+A G++ + + +ATKFS L+ Sbjct: 8 DGIILLNKSKGISSFKAIDELKRKIKAKKAGHAGTLDPMAEGLMVVMINDATKFSGDLMK 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y V LG +TDT D++G+++EE + S Q+ + +F+G I+Q+P MYSA+ Sbjct: 68 KDKEYYVEMELGYKTDTYDSEGKVIEEYKSEIELSDSQIIRTIHSFKGRIKQVPPMYSAI 127 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-------ELELEIHCSKGTYIRT 182 K +G+KLY+ AR+GIE+ R R + + + I+ ++ H S GTYIR+ Sbjct: 128 KVEGQKLYDLARKGIEIERMPRDVEIMNIYKIKIHRPKENSSRIKISFYAHVSSGTYIRS 187 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH-------LRELVEQAEQQDIPAAE 235 ++ D+GEKL A + L R + + +E V+LE L+ELVE+ + + A Sbjct: 188 LVHDIGEKLKVFATMTKLVRTKIGRLSIEDAVSLEEVQSEIGKLKELVEEKRENESFWAT 247 Query: 236 LLDPLLMPMD----------SPASDYPVVNLPLTSSVYFKNGNPV--------------- 270 D + DY +N+ KNG V Sbjct: 248 KSDAAIRAEKIREIVCFVEIEYILDYYGINVSNEKYGKLKNGMTVIDTFKKFENIGKDIK 307 Query: 271 RTSGAPLEGLVRVT----EGENGKFIGMGEIDD--EGRVAPRR 307 R ++ + + +F G+ +I R+ +R Sbjct: 308 RQEHIRENQKFKIYVRNRDTQKREFKGIVKIVSIRGNRIYLKR 350 >UniRef50_C1E906 Predicted protein n=5 Tax=Eukaryota RepID=C1E906_9CHLO Length = 230 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 85/217 (39%), Positives = 121/217 (55%), Gaps = 6/217 (2%) Query: 14 VLLLDKPQGMSSNDALQKVK---RIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 VLL+DKP+G +S D + K + R + + GH G LDP ATG+L +C+G+ATK Sbjct: 2 VLLIDKPKGWTSFDVVGKTRWLSRRMGSKKVGHCGTLDPNATGLLILCVGKATKMVDSFT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y +LG+ T + D ++ E P S LAA GDI+QIP M+SA+ Sbjct: 62 GMDKVYTGTMKLGEGTPSQDCCEEVDERLPWEHVSDADLAAGAKAMEGDIKQIPPMFSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDL 187 K +G++LY+ AR+G V R+ R T+ R + + CSKGTY+RT+ DL Sbjct: 122 KVKGERLYKAARRGETVERKERACTINSFEVWRDKVDSQLAHFRVDCSKGTYVRTLAHDL 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 G LG AH+ LRR ++ ++ VE T+E L E E Sbjct: 182 GRNLGTVAHLTELRRESIGEHSVEDAWTVESLFEACE 218 >UniRef50_C3JA73 tRNA pseudouridine synthase B n=6 Tax=Bacteria RepID=C3JA73_9PORP Length = 261 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 11/240 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRI------YNANRAGHTGALDPLATGMLPICLGEATK 64 + ++ +DKP +S D + + + + + GHTG LDP ATG+L +C G ATK Sbjct: 23 MGSIIAVDKPLDWTSFDVVNRFRIMVKQTVGLKKIKVGHTGTLDPKATGLLLLCTGRATK 82 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIP 123 + L+ + K Y + G T + D + P + L AL F G Q+P Sbjct: 83 QIEQLMLNRKEYVATLKFGATTPSFDLEHPEDAHYPYEHITQGMLEEALQEFLGTTLQVP 142 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 ++SA+ GK+ Y+ AR+G + E +PIT++EL + E L + C KGTYIR++ Sbjct: 143 PIFSAVSVGGKRAYDLARKGKDCQLEGKPITIHELEVVSFEPPYATLRVSCGKGTYIRSL 202 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DLGE+L GA++ LRR + VE +TLE L + + AE E DP++ P Sbjct: 203 ARDLGERLQSGAYLTALRRTQLGNVRVEDSLTLEELPDFLAHAEL----NEEGFDPIVPP 258 >UniRef50_D0RQI7 tRNA pseudouridine synthase B n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQI7_9RICK Length = 297 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 75/302 (24%), Positives = 133/302 (44%), Gaps = 13/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + L KP G +S+ L +K+ + + GH G LDP+A G+LPI + EATK + Sbjct: 2 VHGWINLYKPTGFTSSYCLNVLKKKFKLKKIGHIGTLDPMAEGVLPIAINEATKTIPLIN 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 S K Y G++T+T D++G+I+ +T S E + A+ F G I Q P +SA K Sbjct: 62 KSKKTYFFEVNWGKQTNTLDSEGEIMNISKITPSYEDIKKAIKKFIGTINQSPPEFSAKK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLG 188 GK+ Y+ AR+G++ + +Y L + H+ N + C GTY+R++ D+ Sbjct: 122 IDGKRAYQLAREGVKFELKKVKKKIYGLKILNHDFNNKKSLFVVSCESGTYVRSLAKDIA 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +L + + RL + + L+ L ++ + S Sbjct: 182 TELKTFCYCSKIVRLRDGIFRKKNSYALKTLINN---------ENINDFFKYMLDIKSVL 232 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVR-VTEGENGKFIGMGEIDDEGRVAPRR 307 P + + KNG V + + + + +G + G P+R Sbjct: 233 YHIPTIEINDKKLKLIKNGMKVSMLEEVGSKEYKEILADYHQNVVALGSM-KNGVFYPKR 291 Query: 308 LV 309 ++ Sbjct: 292 IL 293 >UniRef50_C8NZL8 tRNA pseudouridine synthase B (TRNA pseudouridine 55 synthase) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZL8_ERYRH Length = 277 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 92/298 (30%), Positives = 140/298 (46%), Gaps = 25/298 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L ++KPQ M+S D + KV+++ + GH+G LDP+ATG+L + + +ATK YL Sbjct: 1 MDGILCINKPQEMTSFDVVAKVRKLLKV-KVGHSGTLDPMATGVLVLAVNQATKALPYLG 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 +DK YR +LG +T T D G + E+ + +S E + + G Q SA Sbjct: 60 LNDKTYRGKCKLGMKTSTGDIWGAVEEQASIPQYSREDVLTCFEKLTGPQTQRVPKVSAK 119 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKK YEY EV + IT+Y L I EG+E+E S GTYIRT+ +D+G Sbjct: 120 KINGKKSYEYVFNDEEVKQLYTDITIYNLELIALEGDEIEFRAFVSNGTYIRTLCEDIGM 179 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG + L R V Y +E +TLE L + L+ + + Sbjct: 180 LLGTLGTMSALEREQVGPYTLENALTLEALTP----------------ETKLISVKDTIA 223 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P + + Y KNG + E V + + G + + E + E R Sbjct: 224 -LPKI-VNPRMEDYVKNGKRLELD--IEEDQVLI---DTGTYYAVYEREHETTFKSVR 274 >UniRef50_Q2NBZ4 TRNA pseudouridine synthase B n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NBZ4_ERYLH Length = 362 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 157/369 (42%), Gaps = 78/369 (21%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNA-----NRAGHTGALDPLATGML 55 MS + +G ++LDKP+G+ S A+ VKR + GH G LDP A G+L Sbjct: 1 MSDLKPAP---HGWIILDKPRGLGSTQAVGAVKRNLREGGYAKTKVGHGGTLDPEAEGVL 57 Query: 56 PICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF 115 PI LGEATK + +LD+ K Y + G+ TDT DA+G+I +AA L+ F Sbjct: 58 PIALGEATKLAGRMLDASKIYEFTVQFGEETDTLDAEGEITARSDRRPPMAAIAAVLEHF 117 Query: 116 RGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-----------E 164 G+IEQ+P YSAL GK+ Y+ AR G EV + R +T+Y++ RH + Sbjct: 118 TGEIEQVPPKYSALMVDGKRAYDRARAGEEVELKTRRVTIYDISLSRHPREGGDPANLGD 177 Query: 165 GNELELEIHCSKG----------------------------------------------T 178 +E +L+ G T Sbjct: 178 HDESQLDPRLRGGDGVGFLADADLTSTFQTTSGRPDPYDPGAPLELADAITLTAHVSKGT 237 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIR++ D+ LG HV YLRR+ + + ++L+ L E+ + A L Sbjct: 238 YIRSLARDIARALGTVGHVTYLRRIKAGPFAEFQAISLDKLNEIGKGAP---------LQ 288 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID 298 LL+P+++ D P + L S+ + G + +GL + + + E+ Sbjct: 289 DLLLPLEAGLDDIPALTLDSDSAQAVRQGRVLS-ELPQTDGLYLA--KLDDVPVALVELS 345 Query: 299 DEGRVAPRR 307 G R Sbjct: 346 G-GTARVVR 353 >UniRef50_C2KR47 Possible tRNA-pseudouridine synthase I n=2 Tax=Mobiluncus mulieris RepID=C2KR47_9ACTO Length = 371 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 103/354 (29%), Positives = 150/354 (42%), Gaps = 62/354 (17%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L++DKPQG++SN L +V+RI + G+ G LDP+ATG+L LG+ATK QYL S Sbjct: 24 GLLVVDKPQGLTSNQVLSRVRRIAGQKKVGYAGTLDPMATGLLIFALGKATKLLQYLGSS 83 Query: 73 DKRYRVIARLGQRTDTSD-ADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y R G TDT D A + + LA +L +RG I Q+PS +SA+K Sbjct: 84 DKAYVARVRFGVSTDTDDAAGTVVGAAGAGGLTGSVLADSLGAYRGAIHQVPSSFSAIKV 143 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFI------------------------------ 161 G++ Y ARQG +V ++RP+T+ L Sbjct: 144 AGQRAYALARQGQDVKLKSRPVTISRLELESGLAPHEIDVSIGRAAQETTPRNPGGENPG 203 Query: 162 --------------RHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSK 207 R ++++ + CS GTYIR + DLG LG GAH+ LRR V Sbjct: 204 ATGGGAALAAADGGRVTVADVDIAVECSAGTYIRALARDLGRDLGTGAHLTALRRTRVGN 263 Query: 208 YPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD-YPVVNLPLTSSVYFKN 266 Y +E L L E V ++P+D+ +P + L T + Sbjct: 264 YGLEAARNLAELGEEVATQGIIS----------IIPLDAAVKALFPTLELDETQARALGY 313 Query: 267 GNPVRTSGAPL-----EGLVRVTEGENGKFIGMGEID-DEGRVAPRRLVVEYPA 314 G V + E G+ I + + + + V PA Sbjct: 314 GQTVTLPSPSPALYNNNQPLAAALDEAGQVIALVTPRVGDTAIRVKPTWVLRPA 367 >UniRef50_Q6AJY7 tRNA pseudouridine synthase B n=1 Tax=Desulfotalea psychrophila RepID=TRUB_DESPS Length = 246 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 93/238 (39%), Positives = 136/238 (57%), Gaps = 8/238 (3%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQYLLD 71 G+ L+DKP G++S + +V+RI + GH G LDP ATG+L +C G ATK +D Sbjct: 9 GIFLIDKPVGITSFGVVSRVRRILGMKKVGHAGTLDPFATGLLVVCAGRPATKMISSFMD 68 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y LG T+T D +G + + V AE + L F+G Q+P YSALK Sbjct: 69 GEKEYIATLCLGVETETQDPEGAEIARKQVGFLHAETIETCLAGFKGTQMQVPPAYSALK 128 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH-----EGNELELEIHCSKGTYIRTIID 185 +QGK LY YAR+GIEV ++AR ITV+E+ + + L + + CSKG+YIRT+ Sbjct: 129 HQGKPLYYYARKGIEVKKDAREITVHEIERLGEGDLEGDHPSLVIRVRCSKGSYIRTLGS 188 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVT-LEHLRELVEQAEQQDIPAAELLDPLLM 242 D+G+ LGCGAH+ LRR + VE +T ++ L E + + + + E + LL Sbjct: 189 DIGKVLGCGAHLTDLRRTKSGFFNVEDALTDVDMLAEDAHERFMKKVLSVESVGKLLQ 246 >UniRef50_Q1NKV8 TRNA pseudouridine synthase B n=3 Tax=Deltaproteobacteria RepID=Q1NKV8_9DELT Length = 259 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 87/226 (38%), Positives = 127/226 (56%), Gaps = 4/226 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQYLLDS 72 V+ LDKP G SS +Q V+R + GH G LDP A+G+L +C+G AT+ + L+ Sbjct: 13 VIPLDKPVGPSSFRLVQLVRRALGIKKVGHAGTLDPFASGLLLVCVGRGATRLVERLMAG 72 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y +LG TDT D +GQ+ V +L L FRG+I Q+P +SA+K+ Sbjct: 73 DKEYLATLQLGVATDTHDREGQVTATEEVTHEQLLRLQEVLFRFRGEILQVPPAFSAVKH 132 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLGE 189 QG+ LY YAR+G + + R + ++EL + + L + + CSKGTYIR++ ++G+ Sbjct: 133 QGRPLYAYARRGEIIEKPPRRVKIHELTPLELDRRQRRLVIRVRCSKGTYIRSLAHEIGQ 192 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 LGCGAH++ LRRLA + VE V + L E A A Sbjct: 193 SLGCGAHLLELRRLASGPFRVEEAVPGDLLAEPATAAGPLQAGALS 238 >UniRef50_C2D7B6 Possible tRNA pseudouridine 55 synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7B6_9ACTN Length = 315 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 130/312 (41%), Gaps = 23/312 (7%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R IN ++ L KP+G++S+D + ++ I + R GH G LDPLA G+L I +G+AT+ Sbjct: 2 KRGQSGINCLIALHKPKGITSHDCINVLRNILHERRIGHAGTLDPLADGVLLIGIGQATR 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ---LAAALDTFRGDIEQ 121 Y++ DK Y GQ+T T D +G I V E L F G I+Q Sbjct: 62 LLSYIVGHDKSYEASITFGQQTTTDDTEGDICASSLVPACVEDASYAQRVLRHFTGQIQQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH------EGNELELEIHCS 175 +P YSA+ G + Y RQG + R + VY+ + S Sbjct: 122 VPPAYSAISLGGIRAYNAVRQGTPLDLSPRSVCVYKAELSDITFEPSTHAPIWHVHFCVS 181 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 KGTYIR++ D+G AH+ L R + + +TL+ L++ + Sbjct: 182 KGTYIRSLARDIGLYAQTHAHLSALERSSSGSITIADCITLDELKK---------ESLSS 232 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG---LVRVTEGENGKFI 292 L + +L P D D L T V G + L V K Sbjct: 233 LTNRILNPFDVI--DAARYMLGDTDLVDMSYGRSLTIRKNCLNDCANSQLVGCVYQNKLY 290 Query: 293 GMGEIDDEGRVA 304 G+ E D+ + Sbjct: 291 GIYERKDDKLIC 302 >UniRef50_C8W716 tRNA pseudouridine synthase B n=2 Tax=Atopobium RepID=C8W716_ATOPD Length = 313 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 131/302 (43%), Gaps = 23/302 (7%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R IN ++ +DKP G++S+D + +V+R++ R GH G LDP A+G+L + +G ATK Sbjct: 2 KRGASGINALIAIDKPLGLTSHDVVSRVRRVFGEKRVGHAGTLDPNASGVLVVGIGLATK 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLA---AALDTFRGDIEQ 121 L K Y G RT T DADG++V V + A G I Q Sbjct: 62 LLGLLTLDRKGYVADISFGARTSTDDADGKVVATAAVPEELYDIEFARIACTKLVGTINQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-------EGNELELEIHC 174 +P + SA+ GK+ Y+ R+G AR +++Y+ + + + Sbjct: 122 LPPVVSAISVDGKRAYQLVREGKMPELVARRVSIYDASLLAVHTPSDKSDSLVWTVAFDV 181 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKGTYIR+I DLG+ LG AH+ LRR + V LE L + Q + Sbjct: 182 SKGTYIRSIARDLGQSLGTEAHISGLRRTFSGPITLGSCVLLEELEQSPAQILEA----- 236 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYF--KNGNPVRTSGAPLEGLVRVTEGENGKFI 292 L P ++ + V + G P LV + E+ + Sbjct: 237 ----KHLNPTETLGYSVHRLTAAEYKCVEVGKRFGIPEDLCEIANNSLVSLVWNES--LV 290 Query: 293 GM 294 G+ Sbjct: 291 GI 292 >UniRef50_Q14NU4 Putative trna pseudouridine synthase b protein n=1 Tax=Spiroplasma citri RepID=Q14NU4_SPICI Length = 303 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 87/300 (29%), Positives = 145/300 (48%), Gaps = 23/300 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ L++KP G +SN +Q++K+ N+ GH G LDPLATG+L + + ATK S+YLL Sbjct: 3 DGIFLINKPTGKTSNQVIQEIKQKLEINKIGHAGTLDPLATGLLVVLINNATKMSEYLLT 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRG-DIEQIPSMYSAL 129 +DK Y V RL TDT D G ++ + P + L + F G EQ P YSA+ Sbjct: 63 ADKAYDVEMRLFIETDTGDITGNVLNKTAPFKIQKKVLKKIFNEFNGFMYEQYPPKYSAI 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDL 187 K GKKLYEYARQ EV + R +T+ + +++ + ++ + C+KGTYIR+++ D+ Sbjct: 123 KVNGKKLYEYARQDKEVKIKPRTVTIKAIKLKKYDAHNHTIKFSVLCTKGTYIRSLVTDI 182 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 KL A V L R + + + ++ E + + L+ D+ Sbjct: 183 AAKLNTIATVTALCRTQSGNFLLSKAISPETVN----------------FNELISMYDAL 226 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 ++ + L + G P+ + +N + + + + A +R Sbjct: 227 FTNNQQLLLYHHD-EEIRQGKPIVI--IKHTDPIIFIIDKNKNVLAIYKHIGKHVYACQR 283 >UniRef50_C9RKT6 tRNA pseudouridine synthase B n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKT6_FIBSS Length = 318 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 98/328 (29%), Positives = 143/328 (43%), Gaps = 52/328 (15%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G +LLDK G +S AL +KR++ R GH G LD A+G++ G AT+ Y+ Sbjct: 4 SGFVLLDKIAGETSFKALFPLKRVFCTKRVGHAGTLDLRASGLIIAATGRATRLLPYIEA 63 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEER----------------PVTFSAEQLAAALDTF 115 DK Y LG TDT + DG++VE+ + + L A L F Sbjct: 64 KDKCYTFRLHLGYETDTLEWDGKVVEQDKMGCHPGAEGDRIQCGVPSVTRADLEAVLPQF 123 Query: 116 RGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH----------EG 165 GDI+Q+P YSA+K G + + A +G E+ + R I + L + Sbjct: 124 IGDIDQVPPNYSAVKIDGHRASDLANRGREIELKPRRIHIESLKVVGEGLVTEGCTGKSF 183 Query: 166 NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 +LE +CSKGTYIR++ DL LG V +RR + V+R V + L Sbjct: 184 ATFDLECNCSKGTYIRSLGRDLARALGTCGCVSMIRRHRIGDVTVDRAVRGDALT----- 238 Query: 226 AEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVR-------TSGAPLE 278 L+P+D D+PVV L + GN V S P Sbjct: 239 ------------PEHLLPVDQVL-DFPVVRLNDDQVKAIRLGNWVPWRTPVENLSTTPGA 285 Query: 279 GLVRVTEGENGKFIGMGEIDDEGRVAPR 306 T ++G IG+G + D GR+ P+ Sbjct: 286 EKFVFTADKDGAVIGLG-VYDPGRICPK 312 >UniRef50_C9MUE6 tRNA pseudouridine synthase B n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MUE6_9FUSO Length = 358 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 94/337 (27%), Positives = 165/337 (48%), Gaps = 50/337 (14%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++LL+K +G+SS A+ +K++ A + GH G LDP+A G++ + + EATKFS L+ Sbjct: 8 DGLILLNKSKGVSSFGAINHLKKVIKAKKVGHAGTLDPMAEGLMIVMINEATKFSDNLMK 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y V LG +T T D +G ++ + + S ++ A+++F+G I+Q+P MYSA+ Sbjct: 68 KDKEYYVEMELGYKTGTYDLEGTVIAKYDSEINISDSEIIKAVNSFKGKIKQVPPMYSAI 127 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFI----------RHEGNELELEIHCSKGTY 179 K +G+KLY+ AR+GIEV R R + + E+ I + ++ + S GTY Sbjct: 128 KIEGQKLYDLARKGIEVERAERDVEISEIREIKVIRPDKNSENVQNIKISFYVKVSSGTY 187 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLE-------HLRELVEQAEQQDIP 232 IR+++ D+GEKLG A + L R + ++ +E ++LE L+ L+E + + Sbjct: 188 IRSLVYDIGEKLGVFATMTRLVRTKIGRFEIEDAISLEKAKAEIDKLKNLMEGKTENESF 247 Query: 233 AAELLDPLLMP-----------MDSPASDYPVVNLPLTSSVYFKNGNPV----------- 270 A D + ++ DY +N+ KNG V Sbjct: 248 WATKNDSAIRAEKIREIVCFVEIEYVL-DYYGINVSNVKYGKLKNGMTVIDTFKKFENIS 306 Query: 271 ----RTSGAPLEGLVRVTEGENG----KFIGMGEIDD 299 + + ++ +F G+ +I + Sbjct: 307 KEASKGANVRENQKFKIYVRNKNTNVREFKGIVKIVN 343 >UniRef50_C8PR21 tRNA pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PR21_9SPIO Length = 372 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 87/376 (23%), Positives = 147/376 (39%), Gaps = 74/376 (19%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +P + ++ KP G++S +L +VK + GHTG LD A G+L + G Sbjct: 1 MPKPEPQF-----IIPFAKPSGITSFTSLWQVKHALGTKKVGHTGTLDSFADGLLVLLSG 55 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 + TK Y+ D DK YRV+ G+ TDT D +G +++E+P+ + +A+ G IE Sbjct: 56 KLTKLVPYITDFDKTYRVLFYFGKETDTLDPEGTVIDEKPLPV-YADVVSAIRQLTGTIE 114 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE----------- 169 Q+P +YSA+K G++L + R+G V R +T+Y + E+ Sbjct: 115 QVPPVYSAVKQAGERLSDRIRRGETVSVPPRTVTIYSIDIEEIFYEEVSAVPADAAGGNK 174 Query: 170 ------------------------------LEIHCSKGTYIRTIIDDLGEKLGCGAHVIY 199 L + CSKGTYIR+++ D+ + G A+V Sbjct: 175 AAIHADGTDRDTVGIDPLDAANDKTVTGAVLCVRCSKGTYIRSLVRDIAHRCGSAAYVYA 234 Query: 200 LRRLAVSKYPVERMVTLEHLREL-------------------VEQAEQQDIPAAELLDPL 240 LRR AV + +E+ L+ + A + + Sbjct: 235 LRRTAVGPFTLEQAAGFSALQPFGNAAAHAVDADSTDTPAGCADSAAVPHPVTDDAIKQA 294 Query: 241 LMPMDSPAS---DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV----RVTEGENGKFIG 293 +P+ + + + L F NG P+ E + T G +G Sbjct: 295 ALPLSETLARAMHFQMAALKEQYYAAFMNGKPISGHWFTSEQPLSDIGTATVFYEGCCVG 354 Query: 294 MGEIDDEGRVAPRRLV 309 + + R + Sbjct: 355 LMT-KNGNRFHYEAVF 369 >UniRef50_D2NNU2 Pseudouridine synthase n=2 Tax=Rothia mucilaginosa RepID=D2NNU2_9MICC Length = 365 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 97/364 (26%), Positives = 151/364 (41%), Gaps = 63/364 (17%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +++ + +G++++DKP GMSS+DA+ +++RI R GH G LDP ATG+L + + +A Sbjct: 1 MAKKQPQGPSGLMVIDKPAGMSSHDAVSQMRRIAGTRRVGHAGTLDPAATGVLILGINKA 60 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFS----------AEQLAAAL 112 TK YL+ DK Y RLG T T DA+G+ P ++ A+ Sbjct: 61 TKLLTYLVGQDKTYDATIRLGIETLTEDAEGEHTAAHPDAVEALTGMDAEQMRARILEAV 120 Query: 113 DTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF------------ 160 GDI Q+PS SA+K G + Y R G +V ARP+T+ E Sbjct: 121 AQLSGDILQVPSAVSAIKINGVRSYARVRSGEQVELVARPVTISEFTVHSVTAGFAEYVI 180 Query: 161 -----------IRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYP 209 + ++ + CS GTYIR + DLG+ LG G H+ LRR V Sbjct: 181 EDPENEGEHMATSVPVIDCDVTVSCSSGTYIRALARDLGKILGTGGHLTALRRTRVGAVV 240 Query: 210 VERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNP 269 +E L L++ E++E L + + L + G Sbjct: 241 LEDAADLAQLKQRREESEAPLEDLPLLPLEE-----AARRIFGARELSAAEASDISYGRR 295 Query: 270 VRTSG---------------------APLEGLVRVTEGENGKFIGMGEIDDE-GRVA--P 305 + SG A +EG+V +G + + E + G+V P Sbjct: 296 ISPSGDGSVVKRSVHASADESGAVQHASVEGIVAGF-APDGTLVALLENKKQRGKVQAAP 354 Query: 306 RRLV 309 + Sbjct: 355 VLVF 358 >UniRef50_B1GZN9 tRNA pseudouridine synthase B n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=TRUB_UNCTG Length = 230 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 90/210 (42%), Positives = 134/210 (63%), Gaps = 1/210 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +I+G+LLLDKP G++S DA+ K+K++ N + GH G LDP +TG+L + +G+ATK Sbjct: 7 NIDGLLLLDKPFGITSFDAVYKIKKVLNVEKTGHCGTLDPASTGLLLVLMGKATKLQAKF 66 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSA 128 + DK Y LG TD+ D DG+++ E V + E++ ++ F G+I QIP MYSA Sbjct: 67 MKKDKVYLSSFLLGMVTDSGDLDGKVISENSVLNINIEKIKKMVEMFEGEIFQIPPMYSA 126 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LKY GKKL E ARQGIEV R+ R +T+ + + ++G+ +++ I CS GTYIRT+ DLG Sbjct: 127 LKYNGKKLCELARQGIEVERKPRKVTIKKFEVLSYDGDIVKVRIECSSGTYIRTLAQDLG 186 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEH 218 L CGA V LRR + + ++ + + Sbjct: 187 NVLKCGATVKTLRREKIDIFDIKDALRFKD 216 >UniRef50_Q319E0 tRNA pseudouridine synthase B n=8 Tax=Prochlorococcus marinus RepID=TRUB_PROM9 Length = 307 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 80/313 (25%), Positives = 158/313 (50%), Gaps = 24/313 (7%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 + +G L+++K +G +S+D +++++++ N + GHTG LDP G LPI +G AT+F QYL Sbjct: 3 NKDGFLVINKDKGCTSHDCVKQIRKLLNTRKVGHTGTLDPEVIGTLPIAIGSATRFIQYL 62 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y +LG RT+T D G+I+ ++ S E+L L+ FRG I+QIP S+ Sbjct: 63 PQG-KTYIGQIKLGIRTNTDDIHGEIINQKCWPKISDEKLDQYLNKFRGLIKQIPPKVSS 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDD 186 + G++ Y+ + R + + EL+ ++ + +EL+I+CS GTYIR I D Sbjct: 122 VHVNGERAYKKSFNNENFELAPREVKIDELILMKWDQINGIIELKINCSAGTYIRAIARD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LGE L ++ L+R++ + + + + +++ ++Q + ++P S Sbjct: 182 LGEILNSEGCLLQLKRISACGFHEKNSIKISDIKKGIDQKNASN---------FIIPTIS 232 Query: 247 PASDYPVVNLP-LTSSVYFKNGNPVRTS--------GAPLEGLVRVTEGENGKFIGMGEI 297 + + L +++ G ++ + ++V + +G+G + Sbjct: 233 ALNHISTLILNKEEDINFWQTGRAIKFDINYFNEGNNFDNKKPIKVVDKRK-MLLGIGFL 291 Query: 298 DDE-GRVAPRRLV 309 + E + P+ ++ Sbjct: 292 NKELTNINPKLVL 304 >UniRef50_C7M8Y8 tRNA pseudouridine synthase B n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M8Y8_CAPOD Length = 558 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 7/237 (2%) Query: 14 VLLLDKPQGMSSNDALQKVKR------IYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 +LL+DKP SS A+ K+K + GH G LDPLA+G+L IC G+ TK Sbjct: 12 ILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIKIGHAGTLDPLASGLLVICTGKFTKKIT 71 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMY 126 + D+ K Y +G T + D + +I P + E + F G++ Q P ++ Sbjct: 72 EIQDAVKTYTGTITVGATTPSYDKETEINAHYPTDHITPELIEQVRMQFIGELTQTPPVF 131 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SA+K +GK+LYE+AR G E+ R I +Y + +L+ E+ CSKGTYIR++ +D Sbjct: 132 SAIKKEGKRLYEFARDGKEIEVPQRTIYIYSFNIDASQFPKLQFEVVCSKGTYIRSLAND 191 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 G+ LG G ++ LRR + + V +T + + Q + + Sbjct: 192 FGKALGSGGYLSALRRTKIGDFSVNDALTPDEFINIHIPKMQTKPIILTTVFERFID 248 >UniRef50_D0WR19 tRNA pseudouridine synthase B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WR19_9ACTO Length = 345 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 86/273 (31%), Positives = 135/273 (49%), Gaps = 19/273 (6%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKF 65 R +G+ ++DK G++S+D + V+R+ + GH G LDP+ATG+L I LG ATK Sbjct: 8 RGSFPGDGLAVIDKDPGVTSHDVVGAVRRLAGTKKVGHAGTLDPMATGVLCIGLGRATKL 67 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPS 124 +Y+ + K Y R G T T DA G++V A +LA A+ G++ Q+PS Sbjct: 68 LRYVTGTAKEYEATIRFGIETSTEDAQGELVRARGAREADAAELARAMANLTGEVLQVPS 127 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---------NELELEIHCS 175 SALK +G++ Y+ R+G EV +ARPI V + +L++ + C Sbjct: 128 SVSALKVEGRRAYDLVREGREVVLDARPIRVDVFEAVGGPRFAEACGAPVFDLDVRVVCG 187 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 GTY+R + DLGE LG GAH+ LRR V + V V++ + VE Q + Sbjct: 188 AGTYVRALARDLGEALGFGAHLTSLRRTRVGPWDVGEAVSVRECADAVEADGQMPVHTLA 247 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGN 268 L + +P + + ++ + G Sbjct: 248 DL---------CRAMFPALEVSEQAARDLRMGR 271 >UniRef50_A6GK85 TruB (Fragment) n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GK85_9DELT Length = 385 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 150/370 (40%), Gaps = 59/370 (15%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R R+ GVLL+DKP+G +S+D + V+ GH G LDP A+G+L +C+G Sbjct: 1 MGRKRKAESRYTGVLLVDKPEGPTSHDVVGWVRWALGERSVGHCGTLDPPASGLLVVCVG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFS-AEQLAAALDTFRGDI 119 E TK L DKRY +G+ T T+D G+ + PV + E+ ++ RG + Sbjct: 61 EGTKLVDALTSVDKRYWTRLVIGRSTTTADGAGETLTTAPVDAAMLERARELVEALRGPL 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI-------------RHEGN 166 E P YSA+K GK+ + AR G V RP+ V+ L + E Sbjct: 121 ELPPPAYSAVKVDGKRAHALARAGELVELPKRPMAVHALTVLGAGLEPAAATGEDEGEQG 180 Query: 167 ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER--------MVTLEH 218 +ELE+ +KGTYIR++ ++LG +LGC AH+ LRRLA V+ L Sbjct: 181 WIELELRVAKGTYIRSLAEELGRRLGCPAHMARLRRLACGPLTVDDPGAVGGLIAQELPP 240 Query: 219 LRELVEQAEQQDIPAA--------------ELLDPLLMPMDSPASDYPVVNLPLTS---- 260 + + PA E L+ L P V L + Sbjct: 241 REGAPPRWRVELPPADPPVTDNDARRARAREWLESRLRAPWRDLP-MPAVMLDADASEAA 299 Query: 261 ------SVYFKNGNPVR----------TSGAPLEGLVRVTEGENGKFIGMGEIDDEG--R 302 +G + V G + + E D++G R Sbjct: 300 EERAKLVERLLHGQRLPLHPTMRARLGLENVAGGPCALVHLGLQVMILAVVESDEDGDTR 359 Query: 303 VAPRRLVVEY 312 + P R+V Sbjct: 360 LQPTRIVRLR 369 >UniRef50_A4S143 Predicted protein n=3 Tax=Mamiellales RepID=A4S143_OSTLU Length = 279 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 126/232 (54%), Gaps = 7/232 (3%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIY---NANRAGHTGALDPLATGMLPICLGEATKFSQY 68 N +L+DKPQ +S D + +V+R+ + GH G LDP+ATG+L +C+G+ATK + Sbjct: 45 NMTILMDKPQKYTSFDVVARVRRLSRERGVKKVGHCGTLDPMATGLLILCVGKATKSVEE 104 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 DK Y +LG+ T + DAD ++ E P + +L G I+Q+P MYS Sbjct: 105 YSGMDKTYTGTIKLGEGTPSQDADEEVNEREPWEHVTDVELREGARKLTGAIKQLPPMYS 164 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIID 185 A+K GK+LY+ AR+G+EV R+ R + ++E R + + H SKGTY+RT+ Sbjct: 165 AIKVNGKRLYKSAREGVEVERKHRDVVIHEFEVERDAEDAQIVHFSAHVSKGTYVRTLAY 224 Query: 186 DLGEKLGCGAHVIYLRRLAVS-KYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 DL + LG H+ LRR + ++ VE T+E L E + + + Sbjct: 225 DLCKSLGTTGHLTALRRTKIGSEFDVEDAWTIEQLAEACGEDPSKFKKTPKK 276 >UniRef50_B9MR51 tRNA pseudouridine synthase B n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR51_ANATD Length = 290 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 89/304 (29%), Positives = 148/304 (48%), Gaps = 36/304 (11%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVLL+DKP G++S+D ++ V++++N +AGH G LDP ATG+L I LGEATK S + Sbjct: 1 MNGVLLVDKPVGITSHDVVEFVRKVFNV-KAGHAGTLDPFATGLLVILLGEATKLSSFFT 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y + G RTDT D G+I E+ V +++ +G+IE ++SA K Sbjct: 60 SQEKTYIATMQFGIRTDTLDITGKIKEKNSVIVEEKEIEECFKILKGEIELKVPIFSAKK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+KLYEYAR+GI + +Y + I LE ++ CS GTYIR++ + + E Sbjct: 120 LNGRKLYEYARKGINIEIPKVKSIIYNIEIINFSYPYLEFKVQCSHGTYIRSLAEKIAEN 179 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L + LRR+ + ++ VTL +R ++P+ + Sbjct: 180 LSTVGLLSELRRIRSGFFDLKDAVTLSDIRA-----------------ESIIPVCRLFKN 222 Query: 251 YPVVNLPLTSSVYFKNGNPV----------------RTSGAPLEGLVRVTEGENGKFIGM 294 + + + NGNP+ ++ +V + + EN F + Sbjct: 223 --EIKVGRKTYKKILNGNPLVNQDIEDIIDIDTVFADFYKIWVDKVVFIYKRENDVFKYI 280 Query: 295 GEID 298 +++ Sbjct: 281 LKVE 284 >UniRef50_Q2SSF2 tRNA pseudouridine synthase B n=4 Tax=Mollicutes RepID=TRUB_MYCCT Length = 292 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 75/300 (25%), Positives = 146/300 (48%), Gaps = 23/300 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ +L+KP+ +S+ + +VK+ N + GH G LD LATG++ + ATK S YLL+ Sbjct: 4 SGIFILNKPKNISTYQLINQVKKKLNIKKVGHCGTLDLLATGVVICLVNNATKISDYLLN 63 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRG-DIEQIPSMYSAL 129 ++K Y+V +L TD+ D +G I++ + P S +Q+ + + EQ P +YS++ Sbjct: 64 ANKAYQVKIKLFTLTDSYDGEGNIIQTQIPFDISLDQINKVISKYNNYSYEQYPPIYSSI 123 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--NELELEIHCSKGTYIRTIIDDL 187 K GKKLY+YA +V ++R +T+++ + ++ E+ L++ CSKGTYIR++ D+ Sbjct: 124 KVNGKKLYQYALANQDVEIKSRKVTIFKTKLLNYDQKNYEIFLDVKCSKGTYIRSLAIDI 183 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 + L +V+ L R + + + ++ L L + Sbjct: 184 CKDLNTIGYVVELNRTLSGNFDINSAIDIKDLS-----------------WKHLTSIYDA 226 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 + + + K G + + + LV +++ E + + + + +R Sbjct: 227 VKINDFKVVKYHNILDVKQGKKIVLNNI-KDQLVFISD-EQNNILAVYQKYENNIFKVKR 284 >UniRef50_B1X5A1 Putative tRNA pseudouridine 55 synthase n=1 Tax=Paulinella chromatophora RepID=B1X5A1_PAUCH Length = 322 Score = 244 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 93/317 (29%), Positives = 138/317 (43%), Gaps = 36/317 (11%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G LLL+KP M+S + KV+R Y+ R GH G LDP TG LP+ +G AT+ YL + Sbjct: 18 GFLLLNKPANMTSQQCVAKVRRTYSVKRVGHGGTLDPDVTGALPVAIGSATRLLPYLP-T 76 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 +K Y +LGQ T T D +G+I+ + + + E++ L+ FRG I+Q P SA+ Sbjct: 77 EKSYIGEIQLGQVTSTDDLEGEILRNKIIPKLNQEEVDKTLEKFRGIIQQRPPNISAVHI 136 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGN--ELELEIHCSKGTYIRTIIDDLGE 189 G++ Y AR+G + R +TVY L E L I CS GTYIR+I DLGE Sbjct: 137 SGERAYTRARRGESMVIPLRTVTVYGLTIKHWEPKTGRLRFSIRCSSGTYIRSIARDLGE 196 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LGCG + +L+R +P+ + ++ L + + PL+ P+ Sbjct: 197 VLGCGGCLAWLQRNEALGFPINIAIPMKVLGQ-------------NSIPPLIDPL-VVLR 242 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTS-----------------GAPLEGLVRVTEGENGKFI 292 L Y++ G V Sbjct: 243 HMDFYRLQQEELSYWRCGRSFPCDSKRIIAMPKSDGYHYAISFLEGKFPLVLITSEDTLA 302 Query: 293 GMGEIDDEGRVAPRRLV 309 G+ RV PR ++ Sbjct: 303 GIA-YRRSNRVHPRIVL 318 >UniRef50_D1PGN2 tRNA pseudouridine synthase B n=2 Tax=Prevotella RepID=D1PGN2_9BACT Length = 238 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 8/231 (3%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKFSQY 68 ++ +DKP MSS AL V+ + + + GH G LDPLATG+L +C G+ TK + Sbjct: 8 IIAIDKPYRMSSFGALAHVRYLLSKKLGFKVKIGHAGTLDPLATGVLVLCTGKCTKQIEQ 67 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 L K Y +LG T + D + + P + + + L F G+I+Q+P YS Sbjct: 68 LQTHTKEYTATLQLGATTASYDKEHSVNHTYPTEHITRQLVEETLKQFVGEIQQVPPTYS 127 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIID 185 A+K G + Y R G EV + + + V E+ + E + + C KGTYIR++ Sbjct: 128 AVKVNGDRSYALRRAGEEVQLKPKTVRVDEIELTDYNDEEKTASIRVVCGKGTYIRSLAR 187 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 D+G L GA++ LRR + VE ++ +H +E +++ +D Sbjct: 188 DIGRALDSGAYLTALRRTKAGSFAVENCISFDHFQEWLDEQPLEDSLQPSK 238 >UniRef50_B0MTY5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MTY5_9BACT Length = 240 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYN-----ANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + ++DKP +S+D ++K+K + GH G LDPLATG+L +C+G+ATK + Sbjct: 19 IAVIDKPLEWTSSDVVRKIKFALRRAGYPKIKVGHAGTLDPLATGILLVCIGKATKMADA 78 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 L +K Y LG T + D + I P + E + L + G+ Q P +YS Sbjct: 79 LQAEEKEYVADLMLGATTPSFDLEHPIDRTYPFEHITREAVEEVLRSLTGERLQTPPLYS 138 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 A K +G + YE AR G EV I +YE+ + ++ + + + CSKGTYIR++ ++ Sbjct: 139 AKKVEGVRAYELARAGEEVELRKALINIYEMELMEYDLPRIRIRVRCSKGTYIRSLAGEI 198 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 G+ LG GAH+ L R + ++ L E +++AE + Sbjct: 199 GQALGSGAHLTSLCRTRSGGFRLDAAHELNFFLEKLQKAETK 240 >UniRef50_C1A8P0 tRNA pseudouridine synthase B n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8P0_GEMAT Length = 310 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 89/306 (29%), Positives = 125/306 (40%), Gaps = 21/306 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVL +DKP G SS+D + V+R R GH G LDP ATG+L I +G AT+ Y++ Sbjct: 15 SGVLYVDKPAGRSSHDMVGVVRRAARTRRVGHAGTLDPFATGLLVIAVGTATRLLPYIVG 74 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-------FSAEQLAAALDTFRGDIEQIPS 124 K Y + G T+T D G +V E PV AA G I QIP Sbjct: 75 EPKVYDATIQFGADTNTDDGTGIVVREAPVPDAAVLADPVHAVRLAAEAILTGHITQIPP 134 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 YSA G + Y+ AR+G V P+ V + + L++ I C GTYIR + Sbjct: 135 QYSAKHVDGVRAYDLARRGEVVDLAPVPVHVRGWEWRGASESTLDVRITCGGGTYIRALA 194 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 DLG LG AH LRR+ V+ V+ + L + + L Sbjct: 195 RDLGRALGSAAHCSVLRRVQSGPASVDHAVSFDALA----------PGSVIDGEVPLRSP 244 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 D L V + G + + + V G +G R Sbjct: 245 LELLGDMATQILDEEGLVALRFGRTLEATVPGAQ----VALLHEGAIAALGVRTAGDRWQ 300 Query: 305 PRRLVV 310 PR +++ Sbjct: 301 PRVVLI 306 >UniRef50_D0NZ97 tRNA pseudouridine synthase B, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NZ97_PHYIN Length = 319 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 148/337 (43%), Gaps = 55/337 (16%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP G++S+ + ++R+ + + GH G LDP+ATG+L + +G AT+F QYL Sbjct: 1 MSGFLNVRKPAGLTSHRCVGVMRRVLDTRQVGHGGTLDPMATGVLMLAVGRATRFLQYLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K YR RLG TD+ D G + + P S E + L F G+I+Q+P SA+ Sbjct: 61 -TGKEYRGAIRLGITTDSDDITGDVRTQLPAPWISEEMVNMTLQRFIGEIDQVPPRVSAI 119 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G +LY+ AR + + R + + ++ + E+ GTYIR+I + GE Sbjct: 120 KKNGVRLYKLARAKKDFDVKPRRVCIKKIDVQSFTQGDFP-EV---GGTYIRSIARECGE 175 Query: 190 KL--------------------GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 L G + L R + + + + +R ++E+ E Sbjct: 176 ALIVPPEYLDSTCKLRNSVGDFCVGGTLTELERTRSGAFAIADSLDFDEIRSMLERGESP 235 Query: 230 DIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE----------- 278 L P+++ P LPL ++ Y+ NG V +E Sbjct: 236 -----------LQPIENMLQHLPSAELPLQTAQYWLNGGTVTIPAEDIEFVDHNYYKLTS 284 Query: 279 -GLVRVTEGENGKFIGMGEIDDEGRVAP----RRLVV 310 +R+ +G+ ++D + + +RL + Sbjct: 285 GEPIRIYSSS--TMLGIAQVDPQPQYKEVFLRKRLFI 319 >UniRef50_A4AHD1 TRNA pseudouridine synthase B n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AHD1_9ACTN Length = 311 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 96/321 (29%), Positives = 143/321 (44%), Gaps = 31/321 (9%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M++P R +G+L +DKPQG++S+ + + + + GH G LDP+ATG+L + Sbjct: 1 MAKPPRNPA--SGILFVDKPQGITSHGVIARARASVGTRKIGHAGTLDPMATGLLVLGAN 58 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI----VEERPVTFSAEQLAAALDTFR 116 AT+ Y + DK+Y RLG ++T DA+G++ S E +AAA+ Sbjct: 59 NATRLLTYFVGLDKQYLATIRLGASSNTDDAEGELSPAADAAAIAAISDEAIAAAVAGLT 118 Query: 117 GDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL---ELEIH 173 G I Q PS SA+K GK+ Y AR G EV R +T+ + E E + + Sbjct: 119 GPIMQRPSSVSAIKVDGKRAYTLARSGEEVVLAERAVTISVFDILEIERAEFIDVRVRVD 178 Query: 174 CSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPA 233 CS GTYIR + DLG LG G H+ LRR V + V R L+ Sbjct: 179 CSSGTYIRALARDLGGVLGVGGHLTALRRTRVGPFEVSRASVLDD--------------- 223 Query: 234 AELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIG 293 +L L+ P + V L S+ G V + G+ IG Sbjct: 224 -DLAGQLVSPAAVAGELFESVELDDQSAFELSRGRQVPLGAVGTGPI--AVVNSVGRLIG 280 Query: 294 MGEIDDEGRVAPRRLVVEYPA 314 + E+ D R++ +PA Sbjct: 281 LAEVVDGRT----RILSNFPA 297 >UniRef50_A6LEL7 tRNA pseudouridine synthase B n=49 Tax=Bacteroidetes RepID=TRUB_PARD8 Length = 235 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 7/220 (3%) Query: 14 VLLLDKPQGMSSNDALQKVKRIY------NANRAGHTGALDPLATGMLPICLGEATKFSQ 67 +L +KP +S D + K + + GH G LDPLATG++ +C G ATK Sbjct: 8 ILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKRID 67 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMY 126 K Y +LG+ T + D + +I P + E + L TF G I+QIP ++ Sbjct: 68 EFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPPVF 127 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SA K +GK+ YE AR+G EV +++ + + EL + + +++ + CSKGTYIR + D Sbjct: 128 SACKVEGKRAYELARKGEEVELKSKTLVIDELELLECDLPVIKIRVVCSKGTYIRALARD 187 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 +G+ LG GAH+I L R + + ++ ++ E + + +EQ Sbjct: 188 IGKALGSGAHLIGLERTRIGEVTLDMCMSPEEIDDFLEQN 227 >UniRef50_Q820Z5 tRNA pseudouridine synthase B n=2 Tax=Tropheryma whipplei RepID=TRUB_TROW8 Length = 383 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 89/357 (24%), Positives = 147/357 (41%), Gaps = 57/357 (15%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 + VLL+DK G++S+ A+ K++ + + GH G LDP A G+L + G AT+ +Y+ Sbjct: 15 AMTQVLLVDKISGITSHTAVAKIRHLTGVKKIGHCGTLDPAACGLLIMGCGTATRLIRYM 74 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT----FSAEQLAAALDTFRGDIEQIPSM 125 + DKRY LG +T T D++G+I+ P + E + A + G I+QIPS Sbjct: 75 SNLDKRYIATITLGTQTTTDDSEGEIIYSAPKPSLDKITLESIGRAAEKLSGTIKQIPSA 134 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YSA+K G + Y ARQGI AR + V+ E N++ ++I CS GTY+R + Sbjct: 135 YSAIKVSGNRAYNLARQGIIPKLNAREVRVHWKFLGDFENNQVHVQITCSSGTYVRALAR 194 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPV----------------------------------E 211 D+G+ LG G H+ YL+RL++ + + Sbjct: 195 DMGKFLGVGGHLSYLKRLSIGPFHLHEIYREINKKEATMSERTPSGNTQGLTDNMAISDN 254 Query: 212 RMVTLEHLRELVEQA----EQQDIPAAELLDP------------LLMPMDSPASDYPVVN 255 ++ + E E L L + + + Y + Sbjct: 255 MAISESDKHDCTEPGINCTELGIKDTCTALREVHYTQGDTLSFTRLTALQALSRIYKPIE 314 Query: 256 LPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEY 312 + + G + G G V EN I + + G P ++ + Sbjct: 315 VSQKQADDLSCGRYISL-GIDSNGPVCAVCKEN--LIAVIQPVSAGLWRPETVLSDN 368 >UniRef50_A4E6U4 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E6U4_9ACTN Length = 300 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 77/308 (25%), Positives = 121/308 (39%), Gaps = 29/308 (9%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 +L +DKP G +S+D + + +R + R GH G LDP+A+G++ + +G+AT+ L Sbjct: 2 LLAVDKPVGCTSHDVVSQCRRALHERRVGHAGTLDPMASGVMVVGVGQATRLLGMLTLDT 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTF---SAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y G T+T DA+G+ V V L G Q+P +SA+ Sbjct: 62 KSYVADISFGAETNTDDAEGEAVRTVAVANELRDPAYAREHLAAMLGPQMQVPPAFSAIS 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIIDD 186 G + Y+ AR+G V RP+ VY I + + SKGTYIR + D Sbjct: 122 VNGVRAYKSAREGNAVDLPPRPVEVYAADLIAVGGEGDTCVWTVAFSVSKGTYIRALARD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG AH+ LRR A + +E L L P+ + Sbjct: 182 LGRACESAAHISALRRTASGVVSIGACHAVEELS------------PESAAGFALDPIAA 229 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-----GLVRVTEGENGKFIGMGEIDDEG 301 + V+LP + G + A + + +G + I+ G Sbjct: 230 LGAT--RVDLPGNLADDLLCGRRIPVERALADFDALKAPFALVL--DGGLKALARIEG-G 284 Query: 302 RVAPRRLV 309 R + Sbjct: 285 RFVMEHVF 292 >UniRef50_UPI0000D546F1 tRNA pseudouridine synthase B n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D546F1 Length = 291 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 88/302 (29%), Positives = 145/302 (48%), Gaps = 22/302 (7%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 L++KP+ +S D K+K+ Y + GH+G LDP A G++ I TK Y+ +SD Sbjct: 7 FYLVNKPKTWTSQDLCTKIKKTYKFRKVGHSGTLDPNAEGLMLIATNGFTKLFDYIENSD 66 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFS--AEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y+V A +G + T D D + + R + S +++ + L G Q P ++SA+K Sbjct: 67 KTYKVKALIGYSSPTIDIDSEFNKIRDIDVSSYKKEIESFLVGILGSSTQTPPIFSAIKV 126 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 +GK+LY+YARQ EV R I V + + G+E+E I SKGTYIR+I+ DLG+ L Sbjct: 127 KGKRLYKYARQNKEVDIPKRTIHVKDTQLLSTVGSEIEFLITVSKGTYIRSIVYDLGKHL 186 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP--LLMPM-DSPA 248 A V L R V + + + + A+LLD ++ P+ Sbjct: 187 DTEAIVKELVRTKVGNHDIND---------------PEVVMNAKLLDQDYVMKPINWESL 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 P ++L S++ KNG + + VT + + E ++ P ++ Sbjct: 232 LTLPHIDLDKESNLLIKNGQLLSKDLFEEKTKYIVTI--ENEIKAIYEPFNDKYFKPDKV 289 Query: 309 VV 310 ++ Sbjct: 290 II 291 >UniRef50_C1XV12 tRNA pseudouridine synthase B n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XV12_9DEIN Length = 322 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 90/341 (26%), Positives = 132/341 (38%), Gaps = 68/341 (19%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 + +DKP G++S+D + +R R GHTG LDPLATG+L + +TK +L D Sbjct: 3 LFAVDKPLGITSHDVVDAARRRLGTRRVGHTGTLDPLATGVLILASNSSTKLVPFLSAED 62 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y G T+T DA+G + E PV FS + L L F EQ+P YSA+K G Sbjct: 63 KEYLAWVSFGATTETLDAEGPVTAEAPVRFSKKDLETTLPHFLSLTEQVPPAYSAVKIGG 122 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHE----------------------------- 164 K YE AR+G + RP+ E+ + E Sbjct: 123 VKAYEAARKGESLELTPRPVKYLEVTLLAFEPAPKTYRIGPSPNGWEITPVKGRQAPGDA 182 Query: 165 ----------------GNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKY 208 + + GTY+R DLGE LG A + L R V + Sbjct: 183 GTQRGRLVQLPRALGTYPTAVIRLVVGSGTYVRAFARDLGELLGTKAFLSGLVRTRVGRV 242 Query: 209 PVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGN 268 +ER V LE + E Q + +P+V L G Sbjct: 243 GLERCVPLEKIDPEHPLEETQAL------------------SFPLVQLSHAEVKRVLEGV 284 Query: 269 PVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P+ +G V + + + I + E D ++ +R+ Sbjct: 285 PLPIPA---QGYVALVDNRR-QLIAIAE-GDGFKLKIKRVF 320 >UniRef50_C0QZ24 Pseudouridylate synthase n=2 Tax=Brachyspira RepID=C0QZ24_BRAHW Length = 295 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 70/298 (23%), Positives = 125/298 (41%), Gaps = 27/298 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYN------ANRAGHTGALDPLATGMLPICLGEATK 64 + G +L+KP G++S DA+++ K I R GH G LDP A G+L + G TK Sbjct: 1 MKGFCILNKPVGITSFDAIKQTKIILKQKENILEKRVGHAGTLDPFADGVLILAFGRYTK 60 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDT-FRGDIEQ 121 D +K Y G+ DT D +G ++ S E+L + T F+G+I+Q Sbjct: 61 LFFLFDDLNKEYIASGIFGESRDTDDIEGNTIKTSNNNNKLSFEELENIIKTNFKGNIKQ 120 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 P +YSA K GK+ Y+ AR + + + ++ + ++ +++ SKGTYIR Sbjct: 121 KPPIYSAKKINGKRAYDLARDNKSFELKDVDVCIEKIELLEYDYPYFKIKTSVSKGTYIR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 +II D+GE G A+ L+R+++ Y ++ +E + + Sbjct: 181 SIIRDIGEITGNLAYTKELKRVSIGNYNIDMSCNIEDIN-----------------KNKI 223 Query: 242 MPMDSPASDYPVVNL-PLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID 298 + ++ + + GN + + + E + Sbjct: 224 LSFFYMFKNFDKTIIEDASDIRQILCGNTKTIEKIKVNNKYMALTDNKNNLLAIIEKN 281 >UniRef50_Q8WWH5 Probable tRNA pseudouridine synthase 1 n=26 Tax=Eukaryota RepID=TRUB1_HUMAN Length = 349 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 75/273 (27%), Positives = 126/273 (46%), Gaps = 25/273 (9%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNAN----------------RAGHTGALDPLATG 53 ++GV + KP+G +S + L ++K A + GH G LD A G Sbjct: 67 SLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARG 126 Query: 54 MLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAAL 112 +L + +G TK +L KRY I LG+ TDT D+ G++ EE+P + E + L Sbjct: 127 VLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGIL 186 Query: 113 DTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREA-RPITVYELLFIRHEGNELELE 171 F G+I Q+P +YSALK G++L ++G V + RP+TVY + + + L+ Sbjct: 187 QKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLD 246 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV------ERMVTLEHLRELVEQ 225 + C G YIR+++ D+G++L A+V+ L R + + E T++ + + +E Sbjct: 247 VECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEH 306 Query: 226 AEQQDIPAAELLDPLLMPMDSPASDYPVVNLPL 258 L + S + L Sbjct: 307 CSSLFPAELALKKSKPESNEQVLSC-EYITLNE 338 >UniRef50_C6X4Q1 tRNA pseudouridine synthase B n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X4Q1_FLAB3 Length = 233 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 120/208 (57%), Gaps = 8/208 (3%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNAN-------RAGHTGALDPLATGMLPICLGEATKFS 66 ++LLDKP +S A+ K+K + GH G LDP ATG+L +C G+ TK Sbjct: 11 IILLDKPLDWTSFQAVNKLKYKLKREFNLPKKFKIGHAGTLDPRATGLLIVCTGKFTKII 70 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADG-QIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 + D+ K Y+ ++G +T++ D + +I+ + ++ Q+ L++F G+I+Q P + Sbjct: 71 PGIQDAPKEYQTEIKIGVQTESYDTEKPEILPQDFSHITSAQINEVLESFVGEIDQTPPV 130 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA+K G + Y+ AR+G +V ++R TV+ + + E + + CSKGTYIR++ Sbjct: 131 FSAIKIDGSRAYDLARKGKDVEMKSRKTTVHYISEVEVELPIIRFTVGCSKGTYIRSLAH 190 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERM 213 D+G+ LG GA++ LRR + +Y ++ Sbjct: 191 DIGQDLGVGAYLTNLRRTKIGEYSIDSA 218 >UniRef50_D1BAB8 tRNA pseudouridine synthase B n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB8_THEAS Length = 301 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 88/302 (29%), Positives = 139/302 (46%), Gaps = 21/302 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYN-ANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +G LL+DK +G+ S ++ V+R + GH G LD A+G+L +G AT+ S ++ Sbjct: 3 SGFLLIDKEEGLRSTACVEAVRRSLGRDFKVGHAGTLDSGASGLLVALVGRATRLSNLVM 62 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR + RLG RTDT D G+I++ PV + A L+ L +F G Q P SA+ Sbjct: 63 SFSKEYRALVRLGIRTDTEDITGRILDRCPVPRWDAGDLSRVLASFLGCRLQRPPAVSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLF-IRHEGNELELEIHCSKGTYIRTIIDDLG 188 G++ +E AR G E R + V + + + + + C KGTY+R+I DLG Sbjct: 123 HVGGRRAHELARSGEEPNIVPREVFVRRIEVGEMLGPDVVSIRVSCGKGTYVRSIARDLG 182 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 E+LG + LRR +V + VE + + EL + L L+P++ Sbjct: 183 ERLGTWGTIERLRRTSVGPFRVEDALPSGQMGELGTR----------DLLSRLIPLERLG 232 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFI-------GMGEIDDEG 301 P +P NG +R VR G + G+ ++ +G Sbjct: 233 EFLPGGRVPAELDALCSNGGAIRIRDLEAFS-VRAPYVSGGLVLVRYSRGMGIYQLVGDG 291 Query: 302 RV 303 R+ Sbjct: 292 RL 293 >UniRef50_B2KCA4 tRNA pseudouridine synthase B n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCA4_ELUMP Length = 235 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 115/235 (48%), Gaps = 2/235 (0%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE- 61 I+G+LL+DKP SS+D + +R + GH G LDP+ATG+L + + Sbjct: 1 MQNNEVAPISGILLVDKPSDWSSHDIINVARRSMGIRKIGHAGTLDPMATGLLILLVSRT 60 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIE 120 ATK L K Y IA LG TDT DA G I V F + G E Sbjct: 61 ATKLQNKFLKLSKTYEGIAELGSETDTWDAYGGITNTCEVPEFDLPTIHKHAKKLTGSFE 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 I +YSA K G+ ++ Y R+G V ITV+E I + ++ ++ S GTY+ Sbjct: 121 HIVPLYSAKKVNGRPMHRYMREGRIVEERKALITVHEWEEISYSKPNIKFTVNVSSGTYV 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 R++ LG +LGCG H+ LRR V + ++ +T+E LR L ++ + + Sbjct: 181 RSLAYMLGRELGCGGHLTRLRRTRVGDFDIKNAITVEELRSLPQEELYKRVMPLN 235 >UniRef50_B6YSP4 Probable tRNA pseudouridine synthase B n=13 Tax=Archaea RepID=TRUB_THEON Length = 334 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 78/330 (23%), Positives = 137/330 (41%), Gaps = 58/330 (17%) Query: 4 PRRRGRDIN---GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 P +R +++ G++ LDKP G +S++ + VK+++N N+AGH G LDP +G+LP+ L Sbjct: 35 PEKRPMEMHMQFGIINLDKPPGPTSHEVVAWVKKLFNLNKAGHGGTLDPKVSGVLPVALE 94 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 AT+ Q LL + K Y + L +++ A + F G+I Sbjct: 95 RATRVVQALLPAGKEYVALMHLHGEVP-----------------EDKIYAVMKEFEGEII 137 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q P + SA+K R R VY + + +G ++ + GTYI Sbjct: 138 QRPPLRSAVK-----------------RRLRTRKVYYIEILEIDGKDVLFRVGVEAGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERM-VTLEHLRELVEQAEQQDIPAAELLDP 239 R++I +G LG GAH+ LRR + + VTL L + ++ I E Sbjct: 181 RSLIHHIGLALGVGAHMAELRRTRSGPFKEDETLVTLHDLVDYYHFWKEDGI--EEYFRK 238 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS-------GAPLEGLVRVTEGENGKFI 292 + PM+ P V + ++ +G + G LV V ++ + + Sbjct: 239 AIQPMEKAVEHLPKVWIRDSAVAAVTHGADLAVPGIVKVHKGIKKGDLVAVMTLKD-ELV 297 Query: 293 GMGEI---------DDEGRVA-PRRLVVEY 312 +G+ +G ++ + Sbjct: 298 ALGKATMTSGEMLQKSKGIAVDVDKVFMPR 327 >UniRef50_D2MPT8 tRNA pseudouridine synthase B n=1 Tax=Bulleidia extructa W1219 RepID=D2MPT8_9FIRM Length = 280 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 87/298 (29%), Positives = 142/298 (47%), Gaps = 22/298 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++ + L++KPQGM+S D + K++++ + GHTG LDP A G+L + G+ TK Y + Sbjct: 1 MDAIYLINKPQGMTSFDVIAKMRKVLQMKKIGHTGTLDPEAGGLLIVLTGKFTKCIPYCV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG+ +DT D GQI++ER +A +L + +G QIP MYSA Sbjct: 61 KDHKHYIAQFELGKASDTEDVFGQIIQERKARKHTALELNEICSSMKGRYLQIPPMYSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K +GKKLYEYAR+G E+ R+ + + +L + E+E S GTYIRT+I D + Sbjct: 121 KIKGKKLYEYAREGKEMERKTVEVEISDLSVRHLHDDIYEMEAVVSSGTYIRTLIVDFAK 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG A + L+R+ + + + V L + + D Sbjct: 181 KLGELALMTSLKRVGIEHLSLNQSVPLADFDKTTKGIRLFDCVNPA-------------- 226 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 YP+V + + G + E +V + ++ + + ++ G R Sbjct: 227 -YPLVEVKNPA--PILQGKKIALD--RNEEIVLLYHQQD--ILAAYQKENSGLYRCLR 277 >UniRef50_D1AY31 tRNA pseudouridine synthase B n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AY31_STRM9 Length = 285 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 72/292 (24%), Positives = 130/292 (44%), Gaps = 33/292 (11%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 +L+L+KP+ ++S +QKV++ N + GH G LDP+A G++ + +ATKFS YL+ Sbjct: 5 ILILNKPKDITSFSYIQKVRKEMNIKKIGHAGTLDPMAEGLMIVMANDATKFSDYLMKHS 64 Query: 74 KRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y V LG T+T D +G++ + + + + + + +QIP M+SA+K Sbjct: 65 KTYYVEMELGYETNTLDLEGEVTNKINHEINICLDDVKDIVKKYICKFKQIPPMFSAIKK 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 G KLY+ AR+GIE+ E R + + + I N + S GTYIR ++ D+G L Sbjct: 125 NGVKLYDLARKGIELELEGREVEITNIYDIAFSDNIISFRADVSSGTYIRALVRDIGRDL 184 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 + L R ++ + + + + ++ + Y Sbjct: 185 NTYGTMTKLIREKINNFSLNDVNKKISIEDIFD--------------------------Y 218 Query: 252 PVVNLPLTSSVYFKNGNP--VRTSGAPLEGLV-RVTEGENGKFIGMGEIDDE 300 + + NG + ++ N F+G+ EI+ + Sbjct: 219 KKLEVDNNLYKQLYNGMTKIIELKNISDNDKYLKIYF--NNVFVGIVEINKK 268 >UniRef50_Q46GC3 Probable tRNA pseudouridine synthase B n=9 Tax=Euryarchaeota RepID=TRUB_METBF Length = 338 Score = 237 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 77/292 (26%), Positives = 128/292 (43%), Gaps = 42/292 (14%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV+ +DKP+G +S++ VK I + AGH G+LDP TG+LP LG+ATK L S Sbjct: 43 GVVNIDKPKGPTSHEVAAWVKAILGVSTAGHAGSLDPKVTGLLPTLLGKATKAVPALRLS 102 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + +L + + + + F G I Q+P + SA+K Sbjct: 103 GKEYVCLLKLHKEMP-----------------QKLVRKVCEEFTGPIYQMPPIKSAVK-- 143 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 R R T+Y L + EG+ + + C GTYIR + D+G LG Sbjct: 144 ---------------RVIRIRTIYYLEVLEIEGSFVLFRVGCEAGTYIRKLCHDIGLALG 188 Query: 193 CGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYP 252 CG H+ LRR + E +VTL+ L++ ++ + ++MPM++ S P Sbjct: 189 CGGHMQELRRTKAGPFTEETLVTLQDLKDAYVLWKEDG--DESEIRRVIMPMETAVSHLP 246 Query: 253 VVNLPLTSSVYFKNGNPVRTSGAP------LEGLVRVTEGENGKFIGMGEID 298 + L ++ +G + G +G + G+ + + + + Sbjct: 247 KIILRDSAVDAICSGAALAVPGITSLDANLKKGELIALFTLKGELVALAKAE 298 >UniRef50_Q0SM48 tRNA pseudouridine synthase B n=22 Tax=Borrelia RepID=TRUB_BORAP Length = 282 Score = 237 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 82/300 (27%), Positives = 134/300 (44%), Gaps = 22/300 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG LL++K QG +S + L +K+ +N N GH G LD A+G+L +G+ TK + Y + Sbjct: 3 NGFLLINKEQGKTSFETLFPIKKYFNTNHVGHAGILDKFASGILIALVGKYTKLANYFMS 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y R G TDT D +G+IV + + E + L F G+I Q P +S++ Sbjct: 63 LDKEYVAEFRFGLETDTLDPNGRIVNKTDYIPNLEDIDLKLKDFVGEIYQSPPRFSSVHI 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELL--FIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G + Y+ A G + R + VY++ + L L+I CSKGTYIR+I DL Sbjct: 123 NGSRAYKLALNGKFFEIKKRRVNVYDIQRLSYDFSSSLLSLKISCSKGTYIRSIARDLAY 182 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 L A+V L+R V + +E ++L L+ ++S Sbjct: 183 SLNSCAYVSSLKRTKVGIFRLEDSTLCKNLS-----------------KASLISLES-LK 224 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 + V + + KNG V ++ + G+ + + + D + + Sbjct: 225 SFEKVCIDSSKINLVKNGAYVEIQ--ININEFKILKSREGEILAVIKGIDLNKYKYVIIF 282 >UniRef50_C6W615 tRNA pseudouridine synthase B n=5 Tax=Sphingobacteriales RepID=C6W615_DYAFD Length = 244 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 102/204 (50%), Gaps = 1/204 (0%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+L+DKP +S D K+KR + GH G LDPLATG+L +C G+ TK + Sbjct: 24 VILIDKPLTWTSFDVANKLKRACKFKKIGHAGTLDPLATGLLILCTGKKTKQIDNFQAQE 83 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y LG+ T + D + E P + E L A G IEQ+P ++SA+K Sbjct: 84 KEYTGTLVLGKTTPSIDLESDFDAEYPTDHITPEVLENARQQLTGHIEQVPPLFSAIKID 143 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 G + Y+ AR+G E + R + + ++ I CSKGTYIR+++ D G G Sbjct: 144 GVRAYKLARRGEEAEIKKRAVEIKLFEIDATHFPSIDFRIICSKGTYIRSMVRDFGVLAG 203 Query: 193 CGAHVIYLRRLAVSKYPVERMVTL 216 GA++ L R + + ++ L Sbjct: 204 SGAYMSKLCRTRIGDFELKDAWEL 227 >UniRef50_Q0ZC46 Putative accessory gland protein (Fragment) n=5 Tax=Gryllus RepID=Q0ZC46_9ORTH Length = 238 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 11/225 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNAN----------RAGHTGALDPL 50 ++R +G ++KP+ +S AL+++K++ + + GH G LD Sbjct: 8 LNRREVHRLLTDGYFAVNKPKNWTSVQALEEIKKVLRKDIPTHFQPPVLKLGHGGTLDHT 67 Query: 51 ATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLA 109 ATG+L + +G K L DK+Y R G T+T + G+I EE + E Sbjct: 68 ATGVLAVGVGWGCKLLPIFLHGDKKYIAAGRFGIATNTYNETGKITEEMKYDHITEEIFE 127 Query: 110 AALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE 169 + L + G I Q P YSALKYQG+++ ++ R+G+++ + RP+T Y L + E Sbjct: 128 STLQKYTGKIYQTPPKYSALKYQGRRIGDWTREGMDIEMKPRPVTCYSLKSRKFRLPHFE 187 Query: 170 LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV 214 +E+ C G Y+R+++ D+G+ L AHV L R + E M+ Sbjct: 188 IEVACGGGFYVRSLVHDIGQALSSCAHVTTLHRTKHGPFMEEDML 232 >UniRef50_Q72GS9 tRNA pseudouridine synthase B n=4 Tax=Thermaceae RepID=TRUB_THET2 Length = 312 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 139/332 (41%), Gaps = 56/332 (16%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 + +DKP ++S+D +++ +R + R GHTG LDPLATG+L + E+TK +L D Sbjct: 3 LYAVDKPLHLTSHDVVEEARRRLSTRRVGHTGTLDPLATGLLLLVTNESTKLVPFLSGED 62 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y G T T DA+G I EE P F + L AAL F EQ+P +YSA+K G Sbjct: 63 KEYIAWVSFGATTPTLDAEGPISEEAPARFDRKDLEAALPRFLEVREQVPPLYSAIKVGG 122 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHE----------------------------- 164 K+ YE AR+G + RP+ E+ + + Sbjct: 123 KRAYEAAREGKPLALGPRPVRYLEVELLAFDPEPIPHPIAPSARGWRLAERRGRPVRLPR 182 Query: 165 ----GNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 + + GTY+R DLGE LG A + L R V + +ER V L L Sbjct: 183 PLGAYPTAVVRLVVGPGTYVRAFARDLGEMLGTKAFLSGLVRTRVGRVGLERAVALSDLS 242 Query: 221 ELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 E +P +PVV L T + G P+ G Sbjct: 243 PEKAIPELDVLP------------------FPVVELSHTEARRVLEGMPLPIPAM---GY 281 Query: 281 VRVTEGENGKFIGMGEIDDEGRVAPRRLVVEY 312 V + + + + + + E D ++ RR+ + Sbjct: 282 VTLVDSKR-RLLAIAE-GDGFKLKIRRVFAKE 311 >UniRef50_D1PVQ5 tRNA pseudouridine synthase B n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PVQ5_9BACT Length = 232 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 67/220 (30%), Positives = 106/220 (48%), Gaps = 8/220 (3%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKFSQY 68 + +DKP MSS AL V+ + + + GH G LDPLATG+L +C G+ TK + Sbjct: 8 IFAIDKPYRMSSFGALAHVRYLLSRKLGRKVKIGHAGTLDPLATGVLVLCTGKCTKQIET 67 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 L K Y +LG TD+ D + + P + + + L F GDI+Q+P YS Sbjct: 68 LQAHTKEYTATLQLGATTDSYDREHTVNHTYPCRHITEDMVREVLKQFEGDIDQVPPTYS 127 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIID 185 A+K G + Y R G +V + I + ++ + + + + + C KGTYIR + Sbjct: 128 AVKVGGVRAYNMRRMGQDVELAPKRIRIDQIELTAFDAATHRMSIRVVCGKGTYIRALAR 187 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 D+G + GA + LRR V VE + + ++ Sbjct: 188 DIGRAMDSGAFLTELRRTRVGDITVEDCIDFNQFQAWLDH 227 >UniRef50_C3MXC6 rRNA pseudouridine synthase n=7 Tax=Sulfolobaceae RepID=C3MXC6_SULIM Length = 339 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 78/329 (23%), Positives = 134/329 (40%), Gaps = 57/329 (17%) Query: 4 PRRRGRDI---NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 P +R D+ N ++ LDKP G +S++ +K++ N N+AGH G L+P TG+LPI + Sbjct: 36 PEKRPIDVHIKNSIINLDKPPGPTSHEVAYWIKKMLNVNKAGHGGTLEPKVTGVLPIGIE 95 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 ATK Y+ K Y + ++ D E+L + +F G+I Sbjct: 96 NATKIMNYISKGGKEYVCVMQVHCEYD-----------------KEELTKIIKSFEGEIY 138 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q P + S++K R R ++Y++ + + + + C GTY+ Sbjct: 139 QRPPVRSSVK-----------------RRLRVRSIYDIEILDMDKKLVLFRVSCDSGTYM 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDP 239 R + D+G GCGAH+ LRR + +V L L E + ++ L Sbjct: 182 RKLCHDIGIIYGCGAHMRELRRTRSGIFTESTNLVKLHDLSEAIYL--YKNCKDETELRR 239 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA------PLEGLVRVTEGENGKFIG 293 +LMPM+ + P + + ++ G + G V V G+ + Sbjct: 240 VLMPMEYATCEMPKLIIEDSAVNALAYGAQLAVPGIVAYQNFKRNDTVAVLTL-KGELVA 298 Query: 294 MG---------EIDDEGRVA-PRRLVVEY 312 G E +G V R+ ++ Sbjct: 299 TGNALIDSKELENAKKGIVVNLSRVFMQR 327 >UniRef50_C1H9D7 Centromere/microtubule-binding protein cbf5 n=5 Tax=Onygenales RepID=C1H9D7_PARBA Length = 796 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 129/320 (40%), Gaps = 53/320 (16%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GV+ LDKP SS++ + +KRI + GH+G LDP TG L +C+ AT+ + Sbjct: 373 SGVINLDKPANPSSHEVVAWMKRILRVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQG 432 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K Y + RL + Q A AL+T G + Q P + SA+K Sbjct: 433 AGKEYVCVIRLH---------------DKLPGGEAQFARALETLTGALFQRPPLISAVK- 476 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGE 189 R+ R T++E + + + C GTYIRT+ LG Sbjct: 477 ----------------RQLRIRTIHESKLFEFDNDRHLGVFWVSCEAGTYIRTLCVHLGL 520 Query: 190 KLGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LG GAH+ LRR+ + MVTL + + Q + L ++ P++S Sbjct: 521 LLGVGAHMQELRRVRSGAMDEMDGMVTLHDVLDA--QWMMDNNRDESYLRRVIRPLESLL 578 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEID-- 298 + Y + + ++ G + G E +V +T I + ++ Sbjct: 579 TSYKRIVVKDSAVNAVCYGAKLMIPGLLRFEAGIEIHEEVVLMTTKGEAIAIAIAQMSTV 638 Query: 299 -----DEGRV-APRRLVVEY 312 D G V +R ++E Sbjct: 639 ELSTCDHGVVAKVKRCIMER 658 >UniRef50_A5IY15 tRNA pseudouridine synthase B n=2 Tax=Mycoplasma RepID=A5IY15_MYCAP Length = 288 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 70/301 (23%), Positives = 124/301 (41%), Gaps = 27/301 (8%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 L++KP+G SS + + + GHTG LDPLA+G+L + E TK Y+ ++ Sbjct: 2 FYLINKPKGCSSFAVINSFAKENKIKKIGHTGTLDPLASGLLLVATDEDTKLIPYIKHNN 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y + G++TDT D++G ++ V + EQIP YSA K G Sbjct: 62 KAYITTIQFGKQTDTYDSEGTVINHSEVKVGQSDVQKITSWLNSQSEQIPPSYSAKKVNG 121 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLGEKL 191 K YE AR+G + + + I V++ + E + + ++ SKG YIR++++DLG L Sbjct: 122 AKSYELARKGKSIELKPQSIKVFDSKVLSFNSELQQAVVYMNVSKGAYIRSLVNDLGIFL 181 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 A++ L R+ V + ++ + + Sbjct: 182 NTYAYMSELDRVKVGELDID----------------------LLKGKSFIDVSNYALFSL 219 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVE 311 P + KNG + + G + + G+ +D + + +R+ Sbjct: 220 PFYEPTYAEIRHLKNGISILNNKRIKNGEYILKTNQINW--GIVSVDSD-LIKVKRIFGN 276 Query: 312 Y 312 Sbjct: 277 R 277 >UniRef50_B5ZBG4 tRNA pseudouridine synthase B n=15 Tax=Ureaplasma RepID=TRUB_UREU1 Length = 229 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 3/222 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 +++++KP +SND +QKVKRI A + GH G LDP A+G+L + + E TK L Sbjct: 8 IIVINKPINWTSNDVVQKVKRIIKAKKVGHAGTLDPNASGILVLGINEGTKLLTKLTLDS 67 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RGDIEQIPSMYSALKYQ 132 K Y + G T+T D+ G+I+ + + ++ +A++ + + Q P +SALK Sbjct: 68 KTYVAEIQFGISTNTYDSTGEIISKINKFITLTEIESAIENLYKNEYWQKPPKFSALKIN 127 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 190 GKK YE AR I E R + ++E + + L++ I SKG Y+R+ DL + Sbjct: 128 GKKAYELARNNISFEIEPRLVKIFEYNILDFNYEKQILKIIIKVSKGFYVRSFAVDLAAR 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIP 232 + AH++ L R ++ + + +E + + + Sbjct: 188 INNLAHLLSLVRTESGQFSINDAIEIEQVYDYWNNINKHSTN 229 >UniRef50_UPI00004C24EE COG0130: Pseudouridine synthase n=1 Tax=Streptococcus pyogenes M49 591 RepID=UPI00004C24EE Length = 197 Score = 232 bits (593), Expect = 9e-60, Method: Composition-based stats. Identities = 75/196 (38%), Positives = 110/196 (56%), Gaps = 8/196 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ L K GM+S+DA+ K++++ + GH G LDP G+LPI +G+AT+ +Y++ Sbjct: 2 INGIINLKKEAGMTSHDAVFKLRKLLQEKKIGHGGTLDPDVVGVLPIAVGKATRVIEYMI 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 ++ K Y LG T T DA G++V + + E + + TF G I Q P MYSA Sbjct: 62 EAGKVYEGQVTLGYSTTTEDASGEVVARSSLPAVLTEELVDQTMTTFLGKITQTPPMYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELL------FIRHEGNELELEIHCSKGTYIRT 182 +K G+KLYEYAR G V R R +T+ F ++ CSKGTY+RT Sbjct: 122 VKVNGRKLYEYARAGESVERPRREVTISLFERTSPLNFTEDGLCRFSFKVACSKGTYVRT 181 Query: 183 IIDDLGEKLGCGAHVI 198 + DLG LG +H+ Sbjct: 182 LAVDLGRALGVESHMS 197 >UniRef50_C7PUC9 tRNA pseudouridine synthase B n=7 Tax=Bacteroidetes RepID=C7PUC9_CHIPD Length = 232 Score = 232 bits (593), Expect = 9e-60, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 3/223 (1%) Query: 1 MSRPRRRGRDING-VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M++ + G V+L++KP +S D ++K++ A + GH G LDPLATG+L C Sbjct: 1 MNQTAEKNIYEEGQVVLINKPLKWTSFDIVRKIRNTTKA-KTGHAGTLDPLATGLLICCT 59 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGD 118 G+ TK +K Y +G T T D + + + +P+ + E + F G+ Sbjct: 60 GKMTKKINEYQAQEKEYTGTFTIGATTPTYDLESEPTDFKPLDGITEELIHDTTKQFIGE 119 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 ++Q+P ++SA+K GK +YE AR+G+EV E R I + E + + CS GT Sbjct: 120 LQQLPPIHSAIKQNGKPIYELARKGVEVKVEPRNIVIKEFEITNIALPVIHFRVVCSTGT 179 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 YIR++ +D G LG G ++ L R + + +E +E E Sbjct: 180 YIRSLANDFGAALGVGGYMSSLCRTRIGAFKLEDAWEIEKFVE 222 >UniRef50_UPI0001C31DBB tRNA pseudouridine synthase B n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31DBB Length = 295 Score = 232 bits (591), Expect = 1e-59, Method: Composition-based stats. Identities = 87/326 (26%), Positives = 136/326 (41%), Gaps = 56/326 (17%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPICL 59 MS P +GV+L DKP+ ++S+D + +V+R R GH G LDP ATG+L + + Sbjct: 1 MSGPSGPLTPADGVILYDKPRDVTSHDIVYRVRRALPRKTRVGHAGTLDPFATGLLLVLV 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 G T+ ++L+ +K Y IAR G + T D++G+I E V L G + Sbjct: 61 GRGTRAQRFLMALEKSYETIARFGAVSTTGDSEGEISETGVVPDGDLVLP------TGLV 114 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q P YSAL+ G++ Y AR+G +V R + V+ +G I CS GTY Sbjct: 115 RQRPPAYSALRVDGERAYARARRGEDVELPEREVAVHAFEERWRDGARRAFGIRCSSGTY 174 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R+++ DLG+ A+ LRR A+ + V Sbjct: 175 VRSLVADLGD-----AYCEELRRTAIGPFDVADADP-----------------------E 206 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT---------------SGAPLEGLVRVT 284 ++P+ + P L + +G V AP VR+T Sbjct: 207 RIVPLGDALAFLPQRRLGEEEARRAGHGVAVADPEPPGPPDPPDPSSREPAPPAPYVRLT 266 Query: 285 EGENGKFIGMGEID--DEG--RVAPR 306 + I + E D+G + P Sbjct: 267 DAAG--LIAIAEPRRGDDGAPLLKPV 290 >UniRef50_Q10KT9 Os03g0370500 protein n=6 Tax=Magnoliophyta RepID=Q10KT9_ORYSJ Length = 591 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 77/319 (24%), Positives = 130/319 (40%), Gaps = 54/319 (16%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV+ LDKP SS++ + +KR+ + GH+G LDP TG L +C+ AT+ + + Sbjct: 108 GVINLDKPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGA 167 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y +AR ++A AL+ G + Q P + SA+K Sbjct: 168 GKEYVCVARFHAAV----------------PDTARVARALEALTGAVFQRPPLISAVK-- 209 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 190 R+ R T+YE + H+ + I C GTY+RT+ LG Sbjct: 210 ---------------RQLRVRTIYESKLLEHDADRHLAVFWISCEAGTYVRTLCVHLGLL 254 Query: 191 LGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG GAH+ LRR+ + MVT+ + + + + L ++MP++ + Sbjct: 255 LGVGAHMQELRRVRSGILGETDNMVTMHDVMDA--RWAMDNFNDESYLRRIVMPLEVLLT 312 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEID--- 298 Y + + ++ G + G E +V +T IG+ E+ Sbjct: 313 SYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIEVGEEVVLMTTKGEAIAIGIAEMTTAV 372 Query: 299 ----DEG-RVAPRRLVVEY 312 D G +R+V++ Sbjct: 373 MATCDHGAVAKIKRVVMDR 391 >UniRef50_A3MS77 Probable tRNA pseudouridine synthase B n=2 Tax=Thermoproteaceae RepID=TRUB_PYRCJ Length = 333 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 86/315 (27%), Positives = 135/315 (42%), Gaps = 52/315 (16%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 L+LDKP+G +S++ VK+I RAGH+G LDP +G+LP+ + E TK L +D Sbjct: 37 FLILDKPRGPTSHEVAAWVKKILGVERAGHSGTLDPKVSGVLPVAVAEGTKVLMALSRAD 96 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y +A+ E L L +G+I Q P + SA+K Sbjct: 97 KVYIAVAKFHG-----------------DVDVENLRRVLQELQGEIYQKPPLRSAVK--- 136 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 R+ R VY L + +G L++H GTY R +I DLGE LG Sbjct: 137 --------------RQLRTRRVYSLELLELDGRYAVLKMHVEAGTYARKLIHDLGEILGV 182 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPV 253 GA++ LRR+AVS + + VTL+ L + ++ L +L+P++ A P Sbjct: 183 GANMRELRRVAVSCFTEDEAVTLQDLADAYYIWKKYG--DDTYLRRVLLPIEEIARPLPK 240 Query: 254 VNLPLTSSVYFKNGNPVRTSGAPL------EGLVRVTEGENGKFIGMGE----------I 297 + + ++ NG P+ G G + G+ IG+G + Sbjct: 241 IWVRDSAVDALCNGAPLAAPGVAKFEHPFSRGDLVAYFTLKGELIGIGRALVDSEEVKKM 300 Query: 298 DDEGRVAPRRLVVEY 312 + R+V+ Sbjct: 301 EKGLVARTDRVVMPR 315 >UniRef50_Q2GEU5 TRNA pseudouridine synthase B n=2 Tax=Neorickettsia RepID=Q2GEU5_NEOSM Length = 235 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 72/212 (33%), Positives = 108/212 (50%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 I G L LDK G+SS AL+ +KR + +AG+ G LDP+ATG+L I LG TK Sbjct: 9 SIEGWLSLDKESGISSFGALKLLKRKFGVKKAGYVGTLDPIATGVLVIALGRTTKLIPQF 68 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DS K Y G TDT D++G ++ + S + L +F G+ Q+P +SA+ Sbjct: 69 DDSFKEYEFAIEWGAETDTLDSEGAVLRNGGLIPSTSAILGVLPSFLGEQLQVPPKFSAI 128 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G + Y AR GIE + R + ++ + + H + L++ CSKGTY+R + D+ Sbjct: 129 HVNGHRAYSLARAGIEFNMQPRRVVIHSIECMNHSAGQSTLKVSCSKGTYVRALARDIAR 188 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 KL A V +RR + V L + + Sbjct: 189 KLESLAFVSKIRRTRSGIFNVTSGNKLSEITK 220 >UniRef50_B4U903 tRNA pseudouridine synthase B n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U903_HYDS0 Length = 283 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 85/301 (28%), Positives = 144/301 (47%), Gaps = 33/301 (10%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + KP G+SS+ + + + N +AGHTG LD A G++ I LG+ATK++QY Sbjct: 1 MDGFYIGYKPVGISSSKFVLDISKSLNT-KAGHTGTLDLEAEGIMIIALGQATKYTQYFN 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG +TDT D G ++++ V + E+L + ++ F+G I QIP +YSA Sbjct: 60 VLPKIYETKGMLGIKTDTQDISGNVIQKIEDVNITCEELKSTIEKFKGKITQIPPIYSAK 119 Query: 130 KYQGKKLYEYARQGIE--VPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 K GKK Y+ AR+ + + + VY + + E + S GTYIRT+I+D+ Sbjct: 120 KINGKKAYKLARKNQVQSIELKPITVNVYSIELLECNIPEFYTKAVVSTGTYIRTLINDI 179 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+ L GA + ++R AV K+ E + + ++ Sbjct: 180 GDTLKVGATTLIIKRTAVGKFGNESV-------------------------GKIYSIEDG 214 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P + L K+G ++ +G+ ++ E+G F G+ E+ D + R Sbjct: 215 LYFIPSLLLKDDIVRRLKHGKVIKYEA--KDGVYKLL-SEDGMFHGVVEVKDN-VLKALR 270 Query: 308 L 308 + Sbjct: 271 M 271 >UniRef50_A4WH37 Probable tRNA pseudouridine synthase B n=36 Tax=Archaea RepID=TRUB_PYRAR Length = 331 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 86/317 (27%), Positives = 140/317 (44%), Gaps = 52/317 (16%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 + ++LDKP+G SS++ VK+I RAGH G LDP +G+LPI + E TK L Sbjct: 35 HSFVILDKPRGPSSHEVAAWVKKILGVERAGHAGTLDPKVSGVLPIAVAEGTKVLMALSR 94 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 SDK Y +A+ E+L A L F+G+I Q P + SA+K Sbjct: 95 SDKVYVAVAKFHG-----------------DVDEERLRAVLREFQGEIYQKPPLRSAVK- 136 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 R+ R V+ L + EG +++H GTY R II D+GE L Sbjct: 137 ----------------RQLRTRRVFSLELLELEGRYAVIKMHVEAGTYARKIIHDIGEVL 180 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 G GA++ LRR+AV+ + + VTL+ + + ++ L +L+P++ A Sbjct: 181 GVGANMRELRRVAVTCFTEDEAVTLQDVADAYYIWKKYG--DDTYLRSVLLPIEEIARHL 238 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPL------EGLVRVTEGENGKFIGMGE--------- 296 P + + ++ +G P+ G +G + G+ +G+G Sbjct: 239 PKIWVRDSAVDAVCHGAPLAAPGISKFEVPFSKGDIVAMFTLKGELVGIGRALVDSEEVK 298 Query: 297 -IDDEGRVAPRRLVVEY 312 ++ V R+V+ Sbjct: 299 KMERGAVVRTDRVVMRR 315 >UniRef50_Q6KHH8 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma mobile RepID=TRUB_MYCMO Length = 287 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 79/302 (26%), Positives = 134/302 (44%), Gaps = 32/302 (10%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + +LLL K + +SS + + K+ + GH G LDPLATG+L + E TK YL Sbjct: 1 MKMILLLRKTKNISSFNFINNFKKTKGFKKIGHCGTLDPLATGLLIVATDEDTKLIDYLD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y A+LG T T D++G+I+ + V F+ E+L L++F G +Q+P YSA Sbjct: 61 QKDKTYVARAKLGFETTTYDSEGEIINQSSNVKFTKEKLIEVLNSFIGLTKQMPPKYSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDL 187 K G + Y+ ARQ I+ I + ++ + + + N + E+ S+GTYIR++I D+ Sbjct: 121 KLNGIRAYDLARQNIDFELNEVEINITKIKLLSYNEDENYFDFEVVVSRGTYIRSLIYDI 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G KL A++ L R + +E + D ++ Sbjct: 181 GIKLNSLAYMESLERTKIGNLFLE-----------------------KNQDDKILNAKEI 217 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 ++ L G + + + + IG G+I + ++ Sbjct: 218 I-QLEIIQLEKNQIENLSKG--LLIDLKNEDNFYALFW--KDEMIGFGQIL-NNVLKSKK 271 Query: 308 LV 309 L+ Sbjct: 272 LI 273 >UniRef50_Q6L1A0 Probable tRNA pseudouridine synthase B n=1 Tax=Picrophilus torridus RepID=TRUB_PICTO Length = 349 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 74/295 (25%), Positives = 122/295 (41%), Gaps = 43/295 (14%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 ++NG +++DKP+G +S+ ++ I R GH G LDP +G+L + LG+ATK Sbjct: 2 SNLNGFIVVDKPKGPTSHQIDSWIRDITGEPRVGHIGTLDPGVSGVLVMALGKATKLIDI 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 + K Y + R D D D + + F G I QIP + SA Sbjct: 62 VHRESKEYVSVLR---TYDKYDHDS--------------IKSVFKEFTGKIYQIPPVRSA 104 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 V RE R +Y L + + + ++ C GTYIRT+ D+G Sbjct: 105 -----------------VSRELRIREIYNLELLEMDEKFVLFKVCCESGTYIRTLCTDIG 147 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LG G + LRR + TL+ + + + + + +L + +PMD Sbjct: 148 YVLGSGGQMAELRRTRTGPFDESMCHTLQEVSDAF---KLKSMGNEKLFKNIFIPMDFIF 204 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGA------PLEGLVRVTEGENGKFIGMGEI 297 YP V + T+ +G+ + +G P +G V E + + G + Sbjct: 205 IKYPKVIVKETALKNIAHGSDIYPAGIHAITGSPKKGDVVAVYTEKNELVATGTM 259 >UniRef50_C5RLI7 tRNA pseudouridine synthase B n=1 Tax=Clostridium cellulovorans 743B RepID=C5RLI7_CLOCL Length = 229 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 21/237 (8%) Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 ++ K Y +LG TDT D +G++++ S ++ A+++F G+I+Q+P MYSA Sbjct: 1 MNGRKTYIATLKLGVETDTYDREGEVLKTLATEHLSEAEVKEAINSFIGEIKQVPPMYSA 60 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK QGK+LYE AR+G EV R R IT+Y++ + + +++ E+ CSKGTYIR++ D+G Sbjct: 61 LKVQGKRLYELAREGKEVERNERSITIYDIKILEIKVPDIKFEVVCSKGTYIRSLCFDIG 120 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 EKL CG + L R A S + E VTLE L E ++ ++ Sbjct: 121 EKLKCGGAMWDLERTASSSFKKENSVTLEELAVNYEN--------------HIISIEEAI 166 Query: 249 SDYPVVNLPLTSSVYFKNG----NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 ++ + NG NP + + RV + + +G+G + ++G Sbjct: 167 MEFSPLYYNEKIGNLLLNGVCLNNPNIIKNIEFDKIYRVY--KEKELLGLGMLQEKG 221 >UniRef50_C1TML1 tRNA pseudouridine 55 synthase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TML1_9BACT Length = 319 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 86/319 (26%), Positives = 143/319 (44%), Gaps = 26/319 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNA-NRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +G L++DKP+G+ S ++ VKR R GH G LD A G+L + +G+AT+ +Y++ Sbjct: 11 DGFLIIDKPEGVRSTASVSAVKRALGRGVRVGHAGTLDSTAQGLLIVLVGKATRLCRYVM 70 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ--LAAALDTFRGDIEQIPSMYSA 128 D K Y I + G +T T D G I+ ++ L + + +F G Q P SA Sbjct: 71 DLPKSYLGIVKFGVKTSTDDGTGDILSSMDDDPFIDRGSLESLVPSFLGIRMQRPPSISA 130 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDD 186 LK G++ + +R + RP+ + L + E + + C KGTYIR+I D Sbjct: 131 LKVDGRRAHLVSRSEKLMELPLRPVFITSLKVQDVFADKGEATIGVVCHKGTYIRSIARD 190 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G+ G GAH+ LRR++ + V V+ + +++ E+L L+P+D Sbjct: 191 MGDMSGYGAHLSSLRRISTGPFDVSDGVSFSEGMDCLDK---------EVLSQSLLPVDF 241 Query: 247 PASDYPVVNLPL-TSSVYFKNGNPVRTSGAPLEGL------VRVTEGENGKFIGMGEI-- 297 + Y + KNG P+ S R G + + Sbjct: 242 ISRAYRSYEITRHEDLGALKNGLPLPLSTLRPIKNDEAWCCSRAVVTGEG-LLSVCRFRF 300 Query: 298 -DDEGRVAPRR-LVVEYPA 314 DD + P L++E P+ Sbjct: 301 EDDRCYLVPETNLLMESPS 319 >UniRef50_UPI0000E46C2D PREDICTED: similar to TruB pseudouridine (psi) synthase homolog 1 (E. coli) n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E46C2D Length = 280 Score = 228 bits (581), Expect = 2e-58, Method: Composition-based stats. Identities = 81/270 (30%), Positives = 123/270 (45%), Gaps = 49/270 (18%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVK--------------------------- 33 M R R +NG+ + KP G++S + +VK Sbjct: 6 MMRLSR----LNGLFAVRKPMGITSAKVVDRVKAALLRDLKKVETSADLAGEEQVCSALG 61 Query: 34 ----------RIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLG 83 R + GH G LD ATG+L I G TK L K YR RLG Sbjct: 62 CSDKQRVDGQRWIKLPKMGHGGTLDMNATGVLVIGCGRGTKLLSSYLQGGKVYRAQGRLG 121 Query: 84 QRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQ 142 + TDT DA G+ VE + L L++F GDI Q+P +YSALK G+++ + A + Sbjct: 122 RATDTMDASGKEVETAQFDHVTDSLLERCLESFVGDIFQVPPVYSALKVDGERMSDLAAR 181 Query: 143 GIEV-PREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLR 201 G +V P+ ARP+ VY L + + ++++HC G Y+R +I D+G+ LG A + L Sbjct: 182 GEDVQPKPARPVKVYSLHCQGFQPPDFDIKVHCGGGFYVRKLIHDVGKSLGTCAFMTGLC 241 Query: 202 RLAVSKYPVER------MVTLEHLRELVEQ 225 R + +E+ TL+ + +E+ Sbjct: 242 RTEQGYFKLEQHALPEEKWTLKDITRALEE 271 >UniRef50_Q2FRP0 Pseudouridylate synthase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FRP0_METHJ Length = 310 Score = 227 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 82/313 (26%), Positives = 133/313 (42%), Gaps = 54/313 (17%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 ++L+DKP+G SS+ V+ I + GHTG LDP +G+L I LG A + + L D Sbjct: 18 IILIDKPRGPSSHQVAAWVREITGVSSVGHTGTLDPPVSGVLVILLGRAVRLTTILHQDD 77 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y + RL S +LA ++ F G I Q P SA+K Sbjct: 78 KEYVALLRLQG-----------------DVSDAELAEVIEHFTGRIYQRPPKRSAVK--- 117 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 R R ++EL + +G + + C GTYIR++ +G G Sbjct: 118 --------------RALRIREIHELEMLGRDGRLVLFRVKCDSGTYIRSLCHHIGMACGV 163 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPV 253 G ++ LRR + + VTL LR+ VE+A L ++ +P Sbjct: 164 GGAMVELRRTRSGPFSEKDCVTLHTLRDAVEKARA---GDDTYLRKIIRSPLEALHGFPR 220 Query: 254 VNLPLTSSVYFKNGNPVRTSG------APLEGLVRVTEGENGKFIGMGEID--------- 298 + + +++ +G + + G +E LV + G++ FIG+GE Sbjct: 221 IQMKESAADAICHGARLSSRGVVSHDTFQMEDLVVMLAGDD--FIGIGEALVSSSRIVPG 278 Query: 299 DEGRVAPRRLVVE 311 ++G V RLV++ Sbjct: 279 EKGLVVAPRLVMQ 291 >UniRef50_C9M6R3 tRNA pseudouridine synthase B n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6R3_9BACT Length = 303 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 81/273 (29%), Positives = 128/273 (46%), Gaps = 16/273 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYN-ANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +NGVL++ KP G+ S D L+ + R+ + GH G LD A+G L + LG AT+ S ++ Sbjct: 2 LNGVLVVRKPLGLRSTDCLRHLSRVLGRQQKIGHAGTLDSTASGALIVMLGRATRLSNFV 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 +D KRY + G TDT D +G+ + V E+L+ AL + G Q+P SA Sbjct: 62 MDLPKRYVASVQFGWETDTDDREGRPLGPETVPFLDDEKLSCALLSLLGTRLQVPPAVSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTYIRTIIDDL 187 +K G++ + AR G +V RP+TV + I E + L++ C +GTY+R++ DL Sbjct: 122 VKVAGERSHRLARGGYQVENAPRPVTVTSIRVIGSLEKSCRVLDVRCHRGTYVRSLARDL 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G G AH+ L R++V + E + + + + L P+ + Sbjct: 182 GRVTGWKAHLNGLERVSVGNFCAEGGLPPDEFS-------------PQTVQRALHPVTAV 228 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 A Y V + G P R P Sbjct: 229 ARYYARVCVSQDVERRLLCGLPQRLDFLPKIKF 261 >UniRef50_Q1J0C1 tRNA pseudouridine synthase B n=3 Tax=Deinococcus RepID=TRUB_DEIGD Length = 312 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 87/329 (26%), Positives = 137/329 (41%), Gaps = 59/329 (17%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+ +DKP G++S+D + + +R R GHTG LDPLATG+L +C+ ++TK Q++ Sbjct: 3 VIPVDKPLGLTSHDVVNRARRARGTRRVGHTGTLDPLATGVLVLCVDDSTKLVQFMEADS 62 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y LG + T DA+G + E PV S E+ A L F G Q+P YSA++ Sbjct: 63 KEYLAWIALGGTSPTLDAEGPLTEVVPVSPPSEEEARAVLAGFVGPQAQVPPQYSAIQVG 122 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRH----------------------------- 163 G++ Y AR G + AR I ++ L + Sbjct: 123 GQRAYAVARAGGALDLPARNIVIHALELLGISNRMAESPRTFARSSEGWTPDPTGRTFTL 182 Query: 164 -----EGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH 218 E L + S GTY+R++ D+G LG AH+ L R V +Y + V++E Sbjct: 183 PEPLGEFPTLLVRASVSSGTYLRSLARDVGAALGVPAHLAGLVRTRVGRYDLADSVSVED 242 Query: 219 LRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE 278 L A + P LD P + + + G R++ Sbjct: 243 L------AGAEGFPNLAALD------------LPRMEADEPLARALRQGKRPRSAVVG-- 282 Query: 279 GLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 R +G+ + + + D + R Sbjct: 283 ---RHVVTRDGELVAVVD-GDGKELRVVR 307 >UniRef50_UPI0000D53150 tRNA pseudouridine synthase B n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D53150 Length = 230 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 66/217 (30%), Positives = 118/217 (54%), Gaps = 1/217 (0%) Query: 15 LLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDK 74 LL+DK +S D ++K+K + GH G LDPLATG+L +C G+ TK + + +K Sbjct: 13 LLVDKELDWTSFDVVKKIKNTIKCKKVGHAGTLDPLATGLLIVCTGKNTKIINEIQNENK 72 Query: 75 RYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 Y +G+ T + D + + + E + S + + ++F G+ Q P +SA+K G Sbjct: 73 EYSGQFTIGKTTPSHDLETEFINENDISDISDKVILRVSESFVGEQFQRPPKFSAVKVSG 132 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 ++ YEYAR ++ + + IT++ + I C+KGTYIR+I D G+KLGC Sbjct: 133 RRAYEYARDNKKIIIKEKKITIFSFDITSINLPNINFNITCTKGTYIRSIARDFGKKLGC 192 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD 230 GA + L+R + + V+ +++L +++ + ++ Sbjct: 193 GAVLTKLKRTKIGDFDVKNANKIDYLVSKLKREKIEN 229 >UniRef50_P33322 H/ACA ribonucleoprotein complex subunit 4 n=133 Tax=cellular organisms RepID=CBF5_YEAST Length = 483 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 125/320 (39%), Gaps = 54/320 (16%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GV+ LDKP SS++ + +KRI + GH+G LDP TG L +C+ AT+ + Sbjct: 59 SGVINLDKPSNPSSHEVVAWIKRILRCEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQG 118 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K Y I RL + L +L+ G + Q P + SA+K Sbjct: 119 AGKEYVCIVRLH----------------DALKDEKDLGRSLENLTGALFQRPPLISAVK- 161 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGE 189 R+ R T+YE I + C GTY+RT+ LG Sbjct: 162 ----------------RQLRVRTIYESNLIEFDNKRNLGVFWASCEAGTYMRTLCVHLGM 205 Query: 190 KLGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LG G H+ LRR+ + MVTL + + Q + L ++ P+++ Sbjct: 206 LLGVGGHMQELRRVRSGALSENDNMVTLHDVMDA--QWVYDNTRDESYLRSIIQPLETLL 263 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPL--------EGLVRVTEGENGKFIGMGEID-- 298 Y + + ++ G + G + +V +T + + ++ Sbjct: 264 VGYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTV 323 Query: 299 -----DEGRVAP-RRLVVEY 312 D G VA +R ++E Sbjct: 324 DLASCDHGVVASVKRCIMER 343 >UniRef50_Q73NP8 tRNA pseudouridine synthase B n=1 Tax=Treponema denticola RepID=TRUB_TREDE Length = 357 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 43/316 (13%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 + N ++ K G++S ++ VK+ + + GHTG LD A G+L + G+ T+ + Sbjct: 2 ELNKNLIIPFAKQAGLTSFASMSAVKKALSTKKVGHTGTLDLFADGLLVLLTGQLTRLAD 61 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYS 127 + K Y G TDT D +G+ V P+ S + L ++ +F G I Q P +S Sbjct: 62 IISAEKKTYEAWVEFGTETDTLDPEGEPVLTAPLP-SYKNLTESIPSFLGKILQRPPEFS 120 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLF--------IRHEGNELE---------- 169 A+K GK+ + R G ++ R I ++++ + + Sbjct: 121 AIKINGKRASDRIRSGEKIKIAEREIEIFKIELKGIITDSGLEFTEKDFTNINAELKIRY 180 Query: 170 --LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 + + CSKGTYIR+++ DL K A+V LRR AV + +E + L E Sbjct: 181 AHIVVECSKGTYIRSLVRDLARKASSCAYVRALRRTAVGNFKLEDAAGFDLLNNFSAAPE 240 Query: 228 QQDIPAAELLDP----------------------LLMPMDSPASDYPVVNLPLTSSVYFK 265 + ++LD + P + P + L F Sbjct: 241 NLFLKEKKILDAAAGKKFYKQKEIDFLEIMAKSIIFSPKTAENLKLPYLFLDRKYLNDFY 300 Query: 266 NGNPVRTSGAPLEGLV 281 NG ++ + V Sbjct: 301 NGKKIKFNWFLNTDEV 316 >UniRef50_P59883 tRNA pseudouridine synthase B n=1 Tax=Rhodopirellula baltica RepID=TRUB_RHOBA Length = 348 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 78/333 (23%), Positives = 141/333 (42%), Gaps = 41/333 (12%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNAN------RAGHTGALDPLATGMLPICLGEATKFS 66 G L KP G +S D + + +R + GHTG LDPLA G++ + +G A + + Sbjct: 11 GFLPCYKPPGATSRDLVNRAQRRLRGEFGLRKLKVGHTGTLDPLAEGLVLLAIGSAARLT 70 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSM 125 ++L KRY RLG +++ D + ++V + V +A ++ L F G +EQ P Sbjct: 71 PWVLQHGKRYLADFRLGVSSESGDLESELVTQTDVKLPTAAEIEQVLKDFHGVVEQTPPA 130 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA+K G++ ++ AR+G + R I + + I +E + L++ C GTY+RT+ Sbjct: 131 HSAIKVDGERAHKRARRGEDFEMPKRRILIDSVKLISYEPPMMRLDVRCGSGTYLRTLGM 190 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+ GC A + L R V ++ ++ + + + ++ + P + L P + Sbjct: 191 DVAAACGCAAVMTKLIRNEVGRFTLDDTLDCAFMFDDDDREKMSSEPMVKYLRPAI---- 246 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVR-TSGAPLEGLVRVTE------------------- 285 + P +NL + G + T AP E L Sbjct: 247 EGLTHMPAMNLDRQQIGMLQAGIRISGTPEAPSEPLPEAWIGCIDQVDTFDRNTDVLDCI 306 Query: 286 ---------GENGKFIGMGEIDDEGRVAPRRLV 309 G G+ + + + P R+ Sbjct: 307 GVDRSDGSSGPWGELVAILRPHGK-LWHPLRVF 338 >UniRef50_B3TBA4 Putative TruB family pseudouridylate synthase (N terminal domain) n=6 Tax=root RepID=B3TBA4_9ARCH Length = 339 Score = 224 bits (571), Expect = 3e-57, Method: Composition-based stats. Identities = 82/302 (27%), Positives = 137/302 (45%), Gaps = 46/302 (15%) Query: 4 PRRRGRDIN-GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 R + +N G++LLDKP G +S+ + K+I +AGH+G LDP TG+LP+ LG+A Sbjct: 27 KRSVEQLLNYGLILLDKPPGPTSHQVVAWAKKILEIPKAGHSGTLDPQVTGVLPLGLGDA 86 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 TK LL K Y+ + RL S E+L L F GDI Q Sbjct: 87 TKALGVLLFGSKEYQGLGRLHLL-----------------PSKEKLDGILKEFCGDIYQR 129 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P SA V R+ R ++EL + + + + I C GTYIR Sbjct: 130 PPQRSA-----------------VSRQTRIRKIFELELLEQKERLILIRITCESGTYIRK 172 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVER-MVTLEHLRELVEQAEQQDIPAAELLDPLL 241 +I D+GE LG GA ++ LRR V+++ +VTL + + +++ + L L+ Sbjct: 173 LIYDIGEVLGPGATMVELRRTRVNQFHENHPLVTLHQVADAFSDWKEK--KDSTKLLKLI 230 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA-------PLEGLVRVTEGENGKFIGM 294 P+++ S+ + + ++ +G + G + LV + + G+ + + Sbjct: 231 HPIENALSELKSIVIRDSAVDALCHGAQLAIPGILQISPNLQKDELVGIYT-QKGEVVAL 289 Query: 295 GE 296 + Sbjct: 290 AQ 291 >UniRef50_B1L793 Probable tRNA pseudouridine synthase B n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=TRUB_KORCO Length = 325 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 85/330 (25%), Positives = 139/330 (42%), Gaps = 58/330 (17%) Query: 5 RRRGRDI-----NGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPIC 58 R + R I +G+++LDKP+G SS++ ++VKRI + GH G LDP +G+LPI Sbjct: 22 RPQERPIFLYLDHGLIILDKPKGPSSHEVTERVKRILEYPGKVGHCGTLDPKVSGVLPIV 81 Query: 59 LGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGD 118 LG ATK S+++ DK Y L V +L ALD F G Sbjct: 82 LGNATKLSKFISGYDKEYVGTLYLHG---------------DVPID--ELKGALDKFTGP 124 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 I Q P + SA+K R R VY + + EG +L + GT Sbjct: 125 IFQRPPVKSAVK-----------------RSLRVRRVYSIELLSSEGRFHKLRVRVESGT 167 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIR + D+GE LG G + LRR+ + + VTLE +++ + + + Sbjct: 168 YIRKLFFDIGEFLGVGGSMRDLRRIRSGIFTEKDCVTLEDIKDAYDSWRESG--DESKIR 225 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA------PLEGLVRVTEGENGKFI 292 +++P++ P + + ++ +G ++ G +G + G+ I Sbjct: 226 KVILPLEEAVRHLPKIYVKDSAVASLTHGASLKVKGICSLSRGIKKGSIVALMTLKGELI 285 Query: 293 GMGEI---------DDEGRVAP-RRLVVEY 312 +G D G A R+++ Sbjct: 286 AIGRALMDFDEMLSADSGVAASIERVIMPR 315 >UniRef50_B6YR70 tRNA pseudouridine synthase B n=12 Tax=Bacteroidales RepID=B6YR70_AZOPC Length = 226 Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats. Identities = 63/217 (29%), Positives = 111/217 (51%), Gaps = 7/217 (3%) Query: 14 VLLLDKPQGMSSNDALQKVKRI------YNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 +L LDKP +S D + KV+ + + GH G LDPLATG++ IC G+ATK + Sbjct: 8 ILYLDKPLYWTSFDLVNKVRHVISKFLGLKKIKVGHAGTLDPLATGVMIICTGKATKKIE 67 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMY 126 K Y +G T + D + I + + + L F G+IEQ P + Sbjct: 68 AFQHQTKEYIATIHIGATTPSFDLETPIDNIFETSHITRKLVEQTLSKFLGNIEQTPPTF 127 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 S+ K G K YE AR+ +V + + + ++ + ++ E+++ + CSKG+YIR + D Sbjct: 128 SSCKINGSKAYELARKNQKVELKPKLVFFEKIELLSYKPKEIQIHVVCSKGSYIRALTRD 187 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELV 223 +G + GA++ L R + ++ + +E+L +++ Sbjct: 188 IGITIHSGAYLTKLTRTRIGNITLDDCLKIENLDKML 224 >UniRef50_A7I5M0 Pseudouridylate synthase n=4 Tax=Methanomicrobiales RepID=A7I5M0_METB6 Length = 322 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 76/310 (24%), Positives = 127/310 (40%), Gaps = 46/310 (14%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +P R G++++DKP+G SS+ V + GH G LDP +G+L + LG A Sbjct: 13 KPAMPLRHGAGIIVIDKPRGPSSHQVAAWVGTMLGCP-VGHAGTLDPQVSGILLVMLGNA 71 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 + + LL DK Y + RL + +++ A + F G I Q Sbjct: 72 VRLAPLLLKHDKEYICLMRLHKE-----------------VDRQRIDAMAEEFSGRIYQR 114 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P SA+K R R T+ +L + +G + ++ C GTYIR+ Sbjct: 115 PPRRSAVK-----------------RLLRIRTIKKLEILDVQGRLVLFKVECDAGTYIRS 157 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +G LG GAH+ LRR + + M TL L++ LD +++ Sbjct: 158 LCHHMGLALGTGAHMQELRRTRSGAFDEQCMHTLHALQDAC---CAAAAGDRVALDSMIV 214 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNP------VRTSGAPLEGLVRVTEGENGKFIGMGE 296 +D+ D P V + T+ +G + + +V V + +FIG+G+ Sbjct: 215 SVDAAVPDLPAVTVRDTAIDALCHGAALAGVGVIDCDEFRKDQIVAVL-SQKREFIGLGK 273 Query: 297 -IDDEGRVAP 305 + P Sbjct: 274 SLAPSAAWKP 283 >UniRef50_A9A5A3 Pseudouridylate synthase TruB domain protein n=2 Tax=Thaumarchaeota RepID=A9A5A3_NITMS Length = 332 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 81/298 (27%), Positives = 128/298 (42%), Gaps = 45/298 (15%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++LLDKP G +S++ + KRI + GH+G LDP +G+LP+ LGEATK LL Sbjct: 37 GIILLDKPPGPTSHETVAWTKRILKLPKIGHSGTLDPQVSGVLPLGLGEATKALGVLLFG 96 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + R+ S E+L +++ G+I Q P SA Sbjct: 97 PKEYHALGRVHSL-----------------PSKEKLHEVIESLTGEIYQKPPQRSA---- 135 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 V R+ R T+YE + + L + C GTYIR + DLGE LG Sbjct: 136 -------------VVRQTRTRTIYEFEVLEQKERLLLTRVLCEAGTYIRKLYYDLGEILG 182 Query: 193 CGAHVIYLRRLAVSKYPVER-MVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GA +I LRR V ++ +VTL L E++ L ++ P++ S+ Sbjct: 183 PGATMIELRRTRVDQFRETDGLVTLHELANAFALWEEK--KDDSKLKSMIQPVEHALSEL 240 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGA-------PLEGLVRVTEGENGKFIGMGEIDDEGR 302 V + ++ +G + G +V + + G+ + + E G+ Sbjct: 241 KSVVIRDSAIDAMCHGAQLAIPGILQISPSLNKGDIVGIYT-QKGEAVALAEATMSGQ 297 >UniRef50_UPI000038E21C H/ACA RNA-protein complex component Cbf5p n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038E21C Length = 351 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 78/304 (25%), Positives = 128/304 (42%), Gaps = 45/304 (14%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +ING +++DKP+G +S+ V+ I R GH G LDP +G+L + LG Sbjct: 1 MYASNSTPEEINGFIVIDKPKGPTSHQIDAWVREITGEKRVGHIGTLDPNVSGVLVMALG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 +ATK + + K Y + RL DT + F G I Sbjct: 61 KATKLIDIVHERPKEYISVMRLYSTADTD-----------------NIMKVFKEFTGKIY 103 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+P + SA V R+ R T+Y + + + + + C GTYI Sbjct: 104 QLPPVRSA-----------------VSRQVRERTIYNMDVLEIQEKLILFRVKCESGTYI 146 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT+ D+G +G GA + LRRL+ ++ + TL+ L + V + L D + Sbjct: 147 RTLCTDMGYVIGTGAQMADLRRLSTGQFNESHIHTLQELSDSV---VLKKQGDTSLFDNM 203 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP-------LEGLVRVTEGENGKFIG 293 ++PMD +D P V + T+ +G+ + SG V + G + + + Sbjct: 204 VIPMDFVFADSPKVVVKNTAIKNIMHGSDIYPSGIKALIGDIHKGSRVAIYSG-DNELLA 262 Query: 294 MGEI 297 G + Sbjct: 263 FGTM 266 >UniRef50_Q9HIT4 Probable tRNA pseudouridine synthase B n=2 Tax=Thermoplasma RepID=TRUB_THEAC Length = 365 Score = 219 bits (559), Expect = 8e-56, Method: Composition-based stats. Identities = 73/303 (24%), Positives = 126/303 (41%), Gaps = 45/303 (14%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 +ING ++LDKPQG +S+ V+ I + H G LDP TG+L + +G+A + Sbjct: 4 SNINGFVVLDKPQGPTSHQVDHWVREILGIEKVAHIGTLDPNVTGVLTMAIGKAVRLVDV 63 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 + +S K Y + R + + E++ F G I Q+P + SA Sbjct: 64 VHESPKEYVGVMRFYE-----------------DITEEEVRYYFKKFTGRIYQLPPVRSA 106 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 V R R TVY L + + + + C GTYIRT+ D+G Sbjct: 107 -----------------VARSLRIKTVYSLDLLEKKDRLVLFHVKCESGTYIRTLCTDIG 149 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 G G ++ LRR + + +R +TL+ +VE A + + +LL ++ M Sbjct: 150 YVSGKGGQMVDLRRTSTGPFSEDRCITLQDFAAMVELARKGED---KLLRDHILDMTYAF 206 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAP-LEGLVR-----VTEGENGKFI--GMGEIDDE 300 DYP + + ++ +G+ + G ++G R E+ + G+ + Sbjct: 207 KDYPKIVVKRSAMRNIAHGSDLYAGGIKIIDGKFRKGERVAVISEDNDLVGTGIAMCSSD 266 Query: 301 GRV 303 Sbjct: 267 NIF 269 >UniRef50_A6Q784 tRNA pseudouridine synthase B n=8 Tax=Epsilonproteobacteria RepID=TRUB_SULNB Length = 277 Score = 219 bits (559), Expect = 9e-56, Method: Composition-based stats. Identities = 72/292 (24%), Positives = 123/292 (42%), Gaps = 29/292 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N + +++KP +SN + VKR YN + G +G LDP ATG L + G+ TK QYL Sbjct: 1 MNRLFVVNKPIFRTSNGYMGYVKRKYNTKKVGFSGTLDPFATGCLIVATGQYTKLFQYLN 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y+ LG + + D + FS + + L +F+G++ P +SA K Sbjct: 61 KTPKSYKATLWLGANSPSLDIEKVDSIREVAPFSQKTIEEVLQSFKGELTYYPPRFSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GK+ YE AR+G E+ + T+YE+ I + + E S+GTYIR++ + ++ Sbjct: 121 VNGKRAYELAREGKEIDLKQITSTIYEITLINYNHPFIHFEATVSEGTYIRSLGALIADR 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L A + L R+ ++ E L+ L + ++ Sbjct: 181 LRVDATLSSLHRIHEGQFHYENEKALDPFTHLAIPSNIYTGD------------EAYLEL 228 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 +++ + NG + E F + EI E Sbjct: 229 GKKLSVDYFEAKE--NG---------------IYLIETSNFFSIIEIVGEAV 263 >UniRef50_A4G0N3 Probable tRNA pseudouridine synthase B n=28 Tax=Archaea RepID=TRUB_METM5 Length = 333 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 73/316 (23%), Positives = 127/316 (40%), Gaps = 52/316 (16%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP G +S++ V+ + N +AGH G LDP TG LP+ LG TK Sbjct: 31 GLVVIDKPSGPTSHEVAAWVRNMLNLVKAGHGGTLDPKVTGALPVALGNTTKCVPIWHIP 90 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + L D ++ E + F G I Q P + +A+K Sbjct: 91 PKEYVCLMHLHD-------DAKV----------EDIENIFKEFTGRIHQRPPLKAAVK-- 131 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 R R +YE+ + +G ++ C GTY+R ++DD+GE LG Sbjct: 132 ---------------RSLRIRKIYEIEILEIDGRDILFRTKCQSGTYLRKLVDDMGEALG 176 Query: 193 CGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYP 252 AH+ LRR + V L+ L + ++ E L L+ P++ Sbjct: 177 TSAHMQELRRTISGPFYENEAVYLQDLLDAYIFWKEDG--NEEELRKLVKPLEYGLQHLK 234 Query: 253 VVNLPLTSSVYFKNGNPVRTSGAPLEGL------VRVTEGENGKFIGMGEI--------- 297 + + ++ +G + +SG V + E G+ + +G+ Sbjct: 235 KIIVKDSAVDAVCHGATLYSSGVSKIEKGIGTDEVVLIETLKGEAVAVGKPLMNTKDMLK 294 Query: 298 -DDEGRVAPRRLVVEY 312 ++ V R+++E Sbjct: 295 TEEGEVVEITRVIMEP 310 >UniRef50_A7ANK1 tRNA pseudouridine synthase, putative n=1 Tax=Babesia bovis RepID=A7ANK1_BABBO Length = 282 Score = 217 bits (552), Expect = 5e-55, Method: Composition-based stats. Identities = 82/241 (34%), Positives = 118/241 (48%), Gaps = 28/241 (11%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNAN-------------RAGHTGALDPLATG 53 ING+L + KP ++SNDA Q VK+I + GH G LD A G Sbjct: 28 HNTPINGILNIYKPVMITSNDACQMVKKIIIDEMFKRKTIINKPKIKVGHGGTLDMHAEG 87 Query: 54 MLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSD-----------ADGQIVEERPV- 101 +L I +G TK Y L DK Y I LG TDT D A G +++E P Sbjct: 88 VLAIGIGNGTKMLPYYLKGDKIYEAIGILGFETDTLDVNVSCSRTNIHAQGNVMKEEPWE 147 Query: 102 TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI 161 + E L A+++ G +Q+P MYS+ KY GK L EYA + + V +A P+T++ + I Sbjct: 148 HVTQEALNDAINSMSGTYDQLPPMYSSKKYHGKTLREYAIKKLPVVLKATPVTIHSIRRI 207 Query: 162 RH---EGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH 218 E + + CS GTY+R++I D+ KLG A + L R + +E + L+ Sbjct: 208 HELTLELPKFAIRTKCSSGTYVRSLIRDIAYKLGTVATMCSLVRTSKQNLAIEDAIRLDD 267 Query: 219 L 219 L Sbjct: 268 L 268 >UniRef50_B0R686 Probable tRNA pseudouridine synthase B n=10 Tax=Halobacteriaceae RepID=TRUB_HALS3 Length = 301 Score = 216 bits (551), Expect = 7e-55, Method: Composition-based stats. Identities = 79/302 (26%), Positives = 126/302 (41%), Gaps = 49/302 (16%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV+ LDKP G S++ ++ + +A H G LDP TG LP+ G AT+ + LL+ Sbjct: 19 GVVNLDKPPGPSAHQVSAWIRDLVGVEKAAHAGTLDPKVTGCLPVLTGTATRIAPALLEG 78 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + L D +I L ++ F G+I Q P SA+ Sbjct: 79 FKEYVAVLELH------DDPPRI------------LPDVIEAFTGEIYQKPPKKSAV--- 117 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 AR+ R TVY+L + +G ++ L I C GTYIR + D+G LG Sbjct: 118 -------ARR-------LRTRTVYDLDVLDVDGRQVLLRIRCESGTYIRKLCHDIGRALG 163 Query: 193 CGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE-----QQDIPAAELLDPLLMPMDSP 247 AH+ +LRR A + + +VTL L + V + A+ L + P + Sbjct: 164 TNAHMGHLRRSATTPFDDTDLVTLHDLADAVAWLRDTDDTEPPDAPADALRAAVQPAERA 223 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSG---------APLEGLVRVTEGENGKFIGMGEID 298 + P + + +++ G PV G P +G + G + +G + Sbjct: 224 LTHLPRLTIADSAAHEVATGAPVYAPGVIDTTALPTPPADGALVACYTAGGTAVCLGRLV 283 Query: 299 DE 300 + Sbjct: 284 GD 285 >UniRef50_B2S4C6 tRNA pseudouridine synthase B n=2 Tax=Treponema pallidum RepID=TRUB_TREPS Length = 366 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 78/361 (21%), Positives = 138/361 (38%), Gaps = 65/361 (18%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R + ++ K G++S AL +V+R+ + GHTG LD A G+L + +G Sbjct: 1 MCRLSMP----DAIVPFAKVSGLTSFAALAQVRRLLGVKKVGHTGTLDRFADGLLLLLVG 56 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 TK + + +K Y + G +TDT D +G +V + + ++ AAL F G I+ Sbjct: 57 GFTKLAPVMTRLEKSYEARIQFGVQTDTLDPEGAVV-RCSLFPTFARVRAALPHFTGSID 115 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE---------------- 164 Q+P YSALK+ G + + R+G V +AR + V++L + E Sbjct: 116 QVPPEYSALKFGGVRASDRVRRGEAVCMKARRVFVFDLQVLGCEADLGEFKKTQAGRGAA 175 Query: 165 --------GNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTL 216 + L + CS G Y+R + D+ G A+V +LRR + + + + + Sbjct: 176 IADLDLTRVRAVTLYVRCSAGFYVRALARDIAAACGSCAYVSHLRRTRIGPFDLAQAAGV 235 Query: 217 EHLRELVEQAEQQDIPAAE-----------------------------LLDPLLMPMDSP 247 L E+ AA + ++ D Sbjct: 236 SRLGSWTWGKERASCGAACFDVGAPPPPSSGGVATDSVSFGCEDLTVREIKQAVVSCDVD 295 Query: 248 ASD---YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV----RVTEGENGKFIGMGEIDDE 300 ++ ++ + F +G +R G R G+ +G+ Sbjct: 296 FANRIGLTACSVHAQYASRFLHGERIRACWFQSFGTRRPGERALVFSEGRCLGLIRKAAN 355 Query: 301 G 301 G Sbjct: 356 G 356 >UniRef50_D0JB32 tRNA-pseudouridine synthase I n=1 Tax=Blattabacterium sp. (Blattella germanica) str. Bge RepID=D0JB32_BLASB Length = 237 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 10/211 (4%) Query: 12 NG-VLLLDKPQGMSSNDALQKVKRIY-------NANRAGHTGALDPLATGMLPICLGEAT 63 NG +LL+DKP G +S + ++K+K + GH G LDPLATG+L I G+ T Sbjct: 10 NGKILLIDKPWGWTSFEIVKKIKSFILTTIPKKGNLKIGHAGTLDPLATGLLIILTGKYT 69 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQI 122 K + + K Y I +LG T + D++ + + + + + F G+I+Q Sbjct: 70 KKVDDIQNYKKTYTGIIKLGCETLSFDSETEEYNFSSISHITPQLIRKTSQKFVGEIDQY 129 Query: 123 PSMYSALKYQGKKLYEYARQGIEV-PREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 P +SALK +GK+ YEYAR+G ++ ++R + +Y+ ++ ++ I C KGTYIR Sbjct: 130 PPSFSALKTKGKRFYEYARKGEKINSMKSRRVKIYQFHILKIGIPYIKFFIECGKGTYIR 189 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVER 212 ++ D G+ L G +++ LRR + + + Sbjct: 190 SVAQDFGKALKSGGYLLSLRRERIGNFSIND 220 >UniRef50_O44081 H/ACA ribonucleoprotein complex subunit 4 n=74 Tax=Eukaryota RepID=DKC1_DROME Length = 508 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 126/319 (39%), Gaps = 54/319 (16%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G + LDKP SS++ + +K+I + GH+G LDP TG L +C+ AT+ + + Sbjct: 88 GFINLDKPSNPSSHEVVAWIKKILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQSA 147 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y I +L ++ ++ L+ RG + Q P + SA+K Sbjct: 148 GKEYVAIFKLHGAVESV----------------AKVRQGLEKLRGALFQRPPLISAVK-- 189 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 190 R+ R TVY+ + ++ + C G+YIRT+ LG Sbjct: 190 ---------------RQLRVRTVYDSKLLDYDETRNMGVFWVSCEAGSYIRTMCVHLGLV 234 Query: 191 LGCGAHVIYLRRLAVSKYPVER-MVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG G ++ LRR+ MVT+ + + + ++ +L ++ P++ Sbjct: 235 LGVGGQMLELRRVRSGIQSERDGMVTMHDVLDAM--WLYENHKDESMLRRVIKPLEGLLV 292 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEID--- 298 ++ + + +S G + G + +V T + + + Sbjct: 293 NHKRIIMKDSSVNAVCYGAKITLPGVLRYEDGIEIDQEIVICTTKGEAICLAIALMTTAT 352 Query: 299 ----DEGRV-APRRLVVEY 312 D G V +R+++E Sbjct: 353 MASCDHGVVAKIKRVIMER 371 >UniRef50_Q609C2 tRNA pseudouridine synthase B n=1 Tax=Methylococcus capsulatus RepID=TRUB_METCA Length = 224 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 95/170 (55%), Positives = 124/170 (72%), Gaps = 1/170 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVLLLDK GM+SN ALQ+ +++ + +AGHTG+LDPLA+G+LP+C EATK S YLL Sbjct: 9 LSGVLLLDKGSGMTSNSALQRARKLLDMRKAGHTGSLDPLASGILPLCFNEATKLSSYLL 68 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 DSDKRYRV+ARLG TDT DADG++ PV L L F G I Q+P M+SAL Sbjct: 69 DSDKRYRVLARLGVTTDTGDADGEVRLRTPVPALDEPALLTVLAGFTGPILQVPPMFSAL 128 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 K++GK+LYE AR+G+EV R RP+TV+E+ + LEL++HCSKGTY Sbjct: 129 KHRGKRLYELARKGVEVERPPRPVTVFEIELAGRGADYLELDVHCSKGTY 178 >UniRef50_B0VFC4 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFC4_9BACT Length = 265 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 75/281 (26%), Positives = 122/281 (43%), Gaps = 20/281 (7%) Query: 32 VKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDA 91 +++I + + GHTG LDP ATG+L CLG T+ + L + DK Y LG +T T D Sbjct: 1 MRKITGSKKIGHTGTLDPFATGLLICCLGSYTRLAGLLEEKDKTYLARMILGIKTATGDP 60 Query: 92 DGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREAR 151 +G I++ P+ +L R E YSA+K GK+ YE AR+G + R Sbjct: 61 EGDIMQTAPIPEFVSKLDVLAKKARQLTELPVPAYSAVKVNGKRAYELARKGEKFNLPKR 120 Query: 152 PITVYELLFIRHEGN---ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKY 208 P+ + E+ F+ E N EL KGTYIR + + L E+L A+ +LRR ++ Sbjct: 121 PVQIKEVEFLPWEPNKSDELSYRCKVGKGTYIRALSEWLAEQLNTIAYTTFLRRESIGNI 180 Query: 209 PVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGN 268 ++ V+L+ L + + + DY + L NG Sbjct: 181 TLQDAVSLDDLTK-------------DNWFRYQLSYKKVFPDYTCLKLNADDFAKVMNGM 227 Query: 269 PVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 + S E + + + +G+ + P ++ Sbjct: 228 DIAHSNENNEKYILL---KEENICAIGQRM-NNYIHPLMVL 264 >UniRef50_Q4N5B0 TRNA pseudouridine synthase, putative n=1 Tax=Theileria parva RepID=Q4N5B0_THEPA Length = 264 Score = 213 bits (543), Expect = 6e-54, Method: Composition-based stats. Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 17/221 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L + KP G+SS K+K I N N + G + +LP +G+ TK + L Sbjct: 30 SGLLNVYKPYGVSSTYVCNKIKNIINENFPKNKGCV-----MILPFGIGDGTKILESYLK 84 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y G TDT+D G+I+ + E L A+ + +G Q YSA K Sbjct: 85 GDKEYICTGTFGFETDTNDILGKIIHTSNWEYITDEMLEKAIRSLKGFQVQESPTYSAKK 144 Query: 131 YQGKKLYEYARQGIEVPREARPITVYEL-LFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 ++G +YEYA I+VP ++ + + ++ E L +HCS GTYIR+++ D+G Sbjct: 145 HKGIPMYEYALNNIQVPSKSSLVHIKDIYRIKNEELPNFSLFVHCSGGTYIRSVVRDIGR 204 Query: 190 KLGCGAHVIYLR----------RLAVSKYPVERMVTLEHLR 220 +L A + L R + ++ + LE L Sbjct: 205 RLNSRATMASLVIKYCKILSQIRTKKLNFHIKDSLKLEDLT 245 >UniRef50_A0YZZ8 TRNA pseudouridine synthase B (Fragment) n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YZZ8_9CYAN Length = 249 Score = 213 bits (542), Expect = 7e-54, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 103/230 (44%), Gaps = 18/230 (7%) Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K YR R G T T D +G+ + + EQ+ A L F G IEQIP YSA++ + Sbjct: 3 KAYRAKIRFGMTTTTDDLEGETLTTHQITELKLEQIQAVLPRFLGKIEQIPPRYSAVQVE 62 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL---ELEIHCSKGTYIRTIIDDLGE 189 GK+LY+ ARQG V R + V+ L + E ELEI C GTYIR+I DLGE Sbjct: 63 GKRLYDLARQGKVVEVPKRTVEVFNLEVLGWNCGEFPELELEIACGAGTYIRSIARDLGE 122 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 L G + +L R S + + +T+E L ++Q Q L+P Sbjct: 123 MLNTGGTLAHLVRTHSSGFDLTNSLTIEALESQIQQDTFQ-----------LIPASIALK 171 Query: 250 DYPVVNL-PLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEI 297 + L + + G + S + RV NG +G+G+ Sbjct: 172 HLEAITLSSDEKAKRWCQGQRIVCESENSTPSIFRVYH-PNGLLLGLGQR 220 >UniRef50_Q98Q19 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma pulmonis RepID=TRUB_MYCPU Length = 282 Score = 213 bits (542), Expect = 8e-54, Method: Composition-based stats. Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 30/296 (10%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 L+ K +G+SS A++ N + GH+G LDP ATG+L + E TK Y+ Sbjct: 2 FYLIYKEKGISSFKAIKDFAWQNNIKKIGHSGTLDPEATGLLLLASDEDTKLLDYVDKKF 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K YR LG ++ + D+ G+I+ + + + F G QIP ++SA K G Sbjct: 62 KSYRATMILGLQSQSFDSQGKIINSSNLKVDNLTIEKTIKNFVGPFVQIPPIFSAKKING 121 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 K+ YEYARQG E+ +A+ + V + + + ++ + S+GTYIR++I+ +G +L Sbjct: 122 KRAYEYARQGSEISMKAQEVFVKSIEIEKIDFPKVIFKAKVSRGTYIRSLINQIGLELKT 181 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPV 253 A + L R+ +S + + L D V Sbjct: 182 YALMDDLERIELSGLSKNDLGVVSDLD---------------------------IIDLEV 214 Query: 254 VNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 ++L + G S +G K +G+ +I+ + +AP ++ Sbjct: 215 LSLEKHEILTLAKGQK--FSKDLADGKYAFIYKNTKKILGICKIESK-IIAPIKIF 267 >UniRef50_UPI00016A95FF tRNA pseudouridine synthase B n=1 Tax=Burkholderia pseudomallei DM98 RepID=UPI00016A95FF Length = 198 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 108/207 (52%), Gaps = 18/207 (8%) Query: 110 AALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE 169 AAL F G+I Q+P MYSALK GK LYEYAR G V RE R +T+ L + ++ Sbjct: 1 AALARFVGEIVQVPPMYSALKRDGKPLYEYARAGQTVEREGRTVTIRALALVSCALPDVT 60 Query: 170 LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 + CSKGTY+RT+ +D+GE LGCGAH+ LRR V +E VTL+ L + Sbjct: 61 FRVTCSKGTYVRTLAEDIGEALGCGAHLTMLRRTGVGPLTLEHAVTLDALDAATQDER-- 118 Query: 230 DIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT------SGAPLEGLVRV 283 D L P+D+ S +P V L + F +G ++ A G VRV Sbjct: 119 --------DARLAPVDALLSTFPCVKLDAALATRFLHGQRLKLSELAARPDAAEGGRVRV 170 Query: 284 TEGENGKFIGMGEIDDEGRVAPRRLVV 310 + + + +G+ EG +AP RLVV Sbjct: 171 YDA-DDRLLGVARAS-EGVLAPERLVV 195 >UniRef50_UPI00019786FE tRNA pseudouridine synthase B n=1 Tax=Helicobacter cinaedi CCUG 18818 RepID=UPI00019786FE Length = 276 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 64/290 (22%), Positives = 117/290 (40%), Gaps = 28/290 (9%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 ++ KP +SSN L ++KR + + G+ G LDP A G+L + G T+ +L + Sbjct: 5 LVAAYKPPFISSNVYLGRLKRHFGIKKGGYLGTLDPFAQGVLVVGFGSYTRLFPHLRKTP 64 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K YR LG ++ + D + + E S ++ L++ RG + P +SA G Sbjct: 65 KVYRATLWLGAKSLSLDIEHITLVECVKEQSKAHISEILESLRGTLSYTPPKFSARHING 124 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 K+ YE AR+G E +T+Y++ + + L E+ S+G Y+R+I + E LG Sbjct: 125 KRAYELARRGEEFELSQTQMTIYDIKLLHYNHPFLHFEVSVSEGAYVRSIGAMITENLGV 184 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPV 253 + +L R + + V + L +L P++ Y Sbjct: 185 NGVLSHLERTSEGEMSVSQTQGL----------------------KILNPIE--FLPYKR 220 Query: 254 VNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 + G + + + F + ++ +G V Sbjct: 221 LENMQKFYDDMCCGKKILLKNTEKGKYIVCFDD----FFSIIQVLSDGSV 266 >UniRef50_B0SH20 Pseudouridylate synthase, N-terminal subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SH20_LEPBA Length = 309 Score = 210 bits (535), Expect = 5e-53, Method: Composition-based stats. Identities = 83/319 (26%), Positives = 135/319 (42%), Gaps = 30/319 (9%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 D +G L + KP G++S+D + K KR+ GHTG LD A G+L + G+ T FSQ Sbjct: 3 KSDQSGFLFVYKPPGITSSDLVLKTKRLLGQKSVGHTGTLDRFAEGLLVLPCGDYTTFSQ 62 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQI-VEERPV-------TFSAEQLAAALDTFRGDI 119 L DK Y +G RTD+ D DG + +E R F E+L L + Sbjct: 63 VFLGKDKTYLAEVVVGLRTDSGDPDGVVEIETRESSRVEFVSRFPTERLETELKSLTEQK 122 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q SALK GK+ + R+G V + R IT++ ++ I+ IH S GTY Sbjct: 123 TQKAPKISALKVGGKRQSDLFREGTFVEEKERNITIHSVVDIQRTETGFSFRIHVSSGTY 182 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR II DL +K G + L R ++ +Y ++ + LE + + + ++ P Sbjct: 183 IRKIILDLSDKWGIPLSLGRLVRESIGEYGLDGVKPLEEITKADLRTWKEVFP------- 235 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL-VRVTEGENGKFIGMGEID 298 PV + +G + + L + + + + + Sbjct: 236 -----------LPVRIVDEAERKAVVHGGYIWDKLPKADSLGFYILDSDETTILAWCSYE 284 Query: 299 DEGRVAP---RRLVVEYPA 314 ++ P R++ + A Sbjct: 285 EKPAHIPYRYRKVFFDPSA 303 >UniRef50_Q3B200 tRNA pseudouridine synthase B n=12 Tax=Chlorobiaceae RepID=TRUB_PELLD Length = 289 Score = 210 bits (535), Expect = 5e-53, Method: Composition-based stats. Identities = 78/211 (36%), Positives = 113/211 (53%), Gaps = 6/211 (2%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYN----ANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 LLLDKP +S D + K++ Y + GH+G LDP ATG+L + G TK L Sbjct: 17 FLLLDKPLDWTSFDVVAKIRNTYKRGGLKRKVGHSGTLDPKATGLLILATGRKTKEIASL 76 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSA 128 DK Y + +LG RT + D + + P + + AA F G Q P M+SA Sbjct: 77 EGLDKEYLAVIKLGARTASHDVETPETDHTPAGHITLAMVRAAALAFVGPRLQQPPMHSA 136 Query: 129 LKYQGKKLYEYARQGIEV-PREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 ++GK+LY AR+G EV R+A+ I +++ +G + + SKG+YIR I D+L Sbjct: 137 SWHEGKRLYALARKGEEVKERKAKEIVIHQFEVTHMQGPLVYCRLLVSKGSYIRVIADEL 196 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEH 218 G LG GA++ LRR AV Y VE +++E Sbjct: 197 GMALGVGAYLAGLRRTAVGPYRVEDAMSVED 227 >UniRef50_Q8I715 tRNA pseudouridine synthase, putative n=7 Tax=Plasmodium RepID=Q8I715_PLAF7 Length = 560 Score = 209 bits (533), Expect = 9e-53, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 15/223 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNA-----------NRAGHTGALDPLATGMLPICLGE 61 G L + KP + S +K+K+I + GH G LDP A G+L I + + Sbjct: 327 GFLNIYKPVKLYSMRVCEKIKKILKDYFYKLNKKKVNIKVGHGGTLDPFAEGVLIIGIQQ 386 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV---TFSAEQLAAALDTFRGD 118 ATK L K+Y ++ G TDT D +G+I++E V + + L F G Sbjct: 387 ATKKLSDFLKCYKKYLALSIFGYETDTLDREGKIIKEEHVIHKKLKKQDILTNLQKFIGH 446 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR-HEGNELELEIHCSKG 177 I+Q P +YSA +++G +LYEYAR+ I V + + + ++ + + + L+L IHCS G Sbjct: 447 IKQYPPIYSAKRFKGLRLYEYARKNISVQIKPCNVHIKDIQYYKEIDLPFLDLYIHCSGG 506 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 TYIR++I D + +I L R +++ + + + + Sbjct: 507 TYIRSLIRDFANSMNTSGTLIKLVRTEQNEFNYKNSLHYDDIN 549 >UniRef50_Q8CXU1 tRNA pseudouridine synthase B n=6 Tax=Leptospira RepID=TRUB_LEPIN Length = 283 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 67/298 (22%), Positives = 126/298 (42%), Gaps = 29/298 (9%) Query: 23 MSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARL 82 M+S+D + V++ + GHTG LD A+G++ + +G T FS L+ +K Y + Sbjct: 1 MTSSDLVVTVRKKLGFKKVGHTGTLDRAASGLMILPIGSCTSFSSVFLEKEKSYEAWVKP 60 Query: 83 GQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIP-------SMYSALKYQGKK 135 G+ TD+ D +G+I+E + + R EQ+P SALK G++ Sbjct: 61 GESTDSGDKEGEILESLSKEQTETWFQEHQEKLRNLFEQVPTWETQEAPEVSALKVNGRR 120 Query: 136 LYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGA 195 + R+G+ + R I +Y + + +I S GTYIR I+ D+ +++G Sbjct: 121 RSDLFREGVALVPVVRKIKIYRYELGKFSPESISFQIRVSAGTYIRKIVMDISDRIGFPL 180 Query: 196 HVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVN 255 + L R ++ K + + + E L + + P ++ D+P V Sbjct: 181 RLEKLVRTSIGKLNLNQADSYESLLDG---------------KIKIHPPETIL-DFPTVE 224 Query: 256 LPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR----VAPRRLV 309 +P T NG ++ P+ + V + + + ++ G R+ Sbjct: 225 VPDTEVRNVLNGRKIKLEWIPVNEFLLV--SPEEEILAWCKKEEHGIHELDYKYLRVF 280 >UniRef50_C8PIZ6 tRNA pseudouridine synthase B n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PIZ6_9PROT Length = 282 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 73/292 (25%), Positives = 121/292 (41%), Gaps = 28/292 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N + L DKP G+ SN L +KR Y +AG +G LDP A+G L + G+ +F ++L Sbjct: 1 MNRLFLADKPAGIGSNKFLSALKRKYGVKKAGFSGTLDPFASGALIVAFGQYARFFRFLK 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y LG ++ + D + E+ S + L AA+ RG+I+ IP +SA K Sbjct: 61 KEPKIYAATLWLGAQSPSGDNENIERVEQIPPLSRKVLDAAIAQMRGEIKFIPPAFSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y+ AR G EV + + V++ + + + + S+G Y+R+ L EK Sbjct: 121 IDGVRAYKLARAGEEVSLKESSMRVFDAEILSYAHPFVSFRVALSEGGYVRSFAQILAEK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG + LRR + + ++ L+P L +D + Sbjct: 181 LGVCGTLSALRRESEGAFDLKD----------------PRFADEAALNP-LEFLDLAPNF 223 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAP--LEGLVRVTEGENGKFIGMGEIDDE 300 Y + G + +G + G F + EI Sbjct: 224 Y------DGDARDVILGKKLAAKDLASRADGRYLLIC---GDFYSIIEISSG 266 >UniRef50_A7ZE50 tRNA pseudouridine synthase B n=3 Tax=Epsilonproteobacteria RepID=TRUB_CAMC1 Length = 273 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 69/292 (23%), Positives = 119/292 (40%), Gaps = 29/292 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N + + +KP GMSSN L ++KR Y +AG +G LDP A+G L + G TKF ++L Sbjct: 1 MNAIFVANKPAGMSSNHFLGRLKRKYGVKKAGFSGTLDPFASGCLIVAFGSYTKFFRFLD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 S K Y LG + + D + + E+L A G I IP +SA Sbjct: 61 KSPKVYEATIWLGASSPSMDNENITEISNVKELNLEKLEAIRGELIGKISYIPPKFSAKH 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y+ AR G E + + +YE + + L L + S+G+YIR+ + G+K Sbjct: 121 VNGTRAYKLARSGEEFELKPEIMEIYESEILNYSHPFLTLRLSVSEGSYIRSYAEIFGQK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 +G + L+R++ K+ E + + +I Sbjct: 181 VGYNVTLSSLKRVSEGKFRYEN-------EKFLNICNFLNIEQNTYFG------------ 221 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 +G ++ + + + KF+ + +I D+ Sbjct: 222 ---------DINNILDGKELKINDFETQTQG-IYLLNYDKFMSVIQIMDDTI 263 >UniRef50_B3PMC8 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PMC8_MYCA5 Length = 285 Score = 207 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 114/300 (38%), Gaps = 27/300 (9%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 ++K +G+SS A+++ + + + GH G LDPLA G+L + + TK + + D Sbjct: 2 FYQINKKRGISSFKAIKEFAKENHIKKIGHAGTLDPLAQGLLIVATDQDTKMLSLIANDD 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y V A L + + + D I + E L LD + Q+P +SA K G Sbjct: 62 KEYYVKAFLHRSSASYDEGEPITYLENKHITKEMLLKVLDELKNTTTQLPPAFSAKKVNG 121 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEKL 191 + Y AR V + I ++ + I E E SKGTYIR+++ D+G L Sbjct: 122 VRSYLLARDNKNVVLKPNAIKIHYIKLIDFNYEEQSFIFETKVSKGTYIRSMVHDIGLML 181 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 A L+R V ++ + ++ + Sbjct: 182 ATDACTNILKRTKVGNISLDEKNNFSKINDIRK-----------------------LFGV 218 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVE 311 + L + P+ ++ + N + IG G + + G + +L Sbjct: 219 SLYTLTKNQIILLAKQQPLFIENLAMQNDQTIFTFLN-EIIGYGTV-EHGNIKFTKLFYP 276 >UniRef50_P60346 Probable tRNA pseudouridine synthase B n=3 Tax=Archaea RepID=TRUB_NANEQ Length = 348 Score = 206 bits (525), Expect = 7e-52, Method: Composition-based stats. Identities = 74/316 (23%), Positives = 129/316 (40%), Gaps = 55/316 (17%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+ LDKP G +S+ + V+ I +AGH G LDP TG+LPI +GEATK Q LL + Sbjct: 60 VINLDKPSGPTSHQVVAWVRDIVGV-KAGHGGTLDPKVTGVLPIAIGEATKVLQTLLIAG 118 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y + L + S + + + F G I Q P + SA+ Sbjct: 119 KEYVALMHLHKE-----------------VSEKDIIKVMSKFVGTIIQTPPLRSAV---- 157 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 + R VY + I +G ++ + G YIR +I D+G KLG Sbjct: 158 -------------KKRPRKKKVYCIKIIEIDGKDVLFRVSTQGGVYIRKLIHDIGVKLGV 204 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPV 253 GAH+ LRR+ + V L+ + + + +++ E + + +P++ Sbjct: 205 GAHMQELRRIKSGPFHENNSVYLQDIVDSLYFWKEEG--NEEYIRKVFLPVEEAVKHLKK 262 Query: 254 VNLPLTSSVYFKNGNPVRTS-------GAPLEGLVRVTEGENGKFIGMG-------EIDD 299 + + ++ +G + LV + G+ + +G E+ + Sbjct: 263 IYILDSAVAAIVHGANLAVPGIAKLYSNIKKGDLVSIHTL-KGELVAIGIALMDSKEMLE 321 Query: 300 EGR---VAPRRLVVEY 312 + R V R+ ++ Sbjct: 322 KKRGIAVDIERVFMKP 337 >UniRef50_A8BZ83 Centromere/microtubule binding protein CBF5 n=2 Tax=Giardia intestinalis RepID=A8BZ83_GIALA Length = 421 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 72/319 (22%), Positives = 123/319 (38%), Gaps = 44/319 (13%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV+ LDK G SS++ + ++RI + GH+G LDP TG L +CL AT+ + Sbjct: 50 GVINLDKTAGPSSHEVVAWIRRILEVEKTGHSGTLDPGVTGCLLVCLDRATRLVKSQQLM 109 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + + D D + + L AL T R Q+P Sbjct: 110 GKEYVCVLQFKDLAALKDEDAR-------KAFSACLQQALATLRCAQLQLPPK------- 155 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 190 +G V R+ R +Y L + L C GTY+RT+ +G Sbjct: 156 ---------EGCAVKRQLRVREIYTLDLLEFNFKTGQAVLRASCQAGTYMRTLCVHIGLL 206 Query: 191 LGCGAHVIYLRRLAVSKYPVE-RMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +G A+++ LRR+ + + MVTL + + +++ L ++MP++ Sbjct: 207 VGHEAYMLELRRVRSGELTEKTNMVTLHDVLD--SFWCWKNLGDESYLRKVVMPLEYLLK 264 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGA------PLEGLVRVTEGENGKFIGMGEID----- 298 Y + + +S G P+ G G V G+ + +G Sbjct: 265 SYKRIFVKDSSINALTYGAPLHIQGVLRYDPRISIGDTVVLVSTKGEAVALGTATMGAQD 324 Query: 299 ----DEGRV-APRRLVVEY 312 G V +R++++ Sbjct: 325 IMGVSRGIVSKVKRVIMDR 343 >UniRef50_Q601U7 tRNA pseudouridine synthase B n=3 Tax=Mycoplasma hyopneumoniae RepID=TRUB_MYCH2 Length = 327 Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 77/302 (25%), Positives = 128/302 (42%), Gaps = 33/302 (10%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 + L KP+ +SS L++ + +AGH G LDPLA+G+L + + TK QYL Sbjct: 49 ITFLYKPKKISSAKFLRQWSKTNLIKKAGHAGTLDPLASGLLLVATEDDTKLLQYLDQKT 108 Query: 74 KRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + G + T DA+GQI E+P+ + + L AL+ +Q+P ++S+ K Sbjct: 109 KTYLAKIQFGFWSTTYDAEGQIYGVEQPIKVTKDNLEQALNRLSESQKQVPPVFSSKKVS 168 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEG--NELELEIHCSKGTYIRTIIDDLGEK 190 GK Y YARQG ++ + I + + + I + + S+G YIR++ DDLG+ Sbjct: 169 GKSAYHYARQGKQIELKPISIKISKTILINFDEKLQNCVIMWQVSRGCYIRSLADDLGKM 228 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L A++ L R + + + L+ L P D D Sbjct: 229 LKTRAYLSDLERTKIGNFD------------------------KKFLNQSLKPQD--LFD 262 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 V L L + G + E + + +G G+I + ++L Sbjct: 263 LQQVKLDLENLELLLQGKKINYFAKNSELNTLIF---KDEVVGFGKII-NNVLITKKLFG 318 Query: 311 EY 312 Sbjct: 319 NR 320 >UniRef50_Q8CXQ2 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma penetrans RepID=TRUB_MYCPE Length = 232 Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 3/211 (1%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 + + ++KP+ SSN +Q +K+ Y + GH G LDPLATG+L + TK L+ Sbjct: 17 DKIFGINKPKNFSSNQVIQIIKKYYGLKKIGHAGTLDPLATGLLLVATNSKTKELNELIL 76 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI-EQIPSMYSALK 130 +K+Y + +T T DA+G+I + L L Q P +YSA+K Sbjct: 77 ENKKYVAEIQFNYQTSTYDAEGEITNYTTRKIHEKTLKEELKFLNSTYWYQQPPVYSAVK 136 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLG 188 +GKKLYEYAR EV + + + ++ I + + + + SKG YIR+ +D+G Sbjct: 137 IKGKKLYEYARANQEVSVPFKKVYINKVELISFDSISQKTFVSLDVSKGFYIRSFANDIG 196 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 +L +++ L+R+ V Y +++ L Sbjct: 197 LRLNNYGYLLNLKRVEVGNYKLDQAYDFFDL 227 >UniRef50_O60832 H/ACA ribonucleoprotein complex subunit 4 n=80 Tax=Eukaryota RepID=DKC1_HUMAN Length = 514 Score = 203 bits (518), Expect = 5e-51, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 127/319 (39%), Gaps = 54/319 (16%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G + LDKP SS++ + ++RI + GH+G LDP TG L +C+ AT+ + + Sbjct: 90 GFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIVCIERATRLVKSQQSA 149 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y I RL +G QL+ AL+T G + Q P + +A+K Sbjct: 150 GKEYVGIVRLHNA-----IEGGT-----------QLSRALETLTGALFQRPPLIAAVK-- 191 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 190 R+ R T+YE I ++ + C GTYIRT+ LG Sbjct: 192 ---------------RQLRVRTIYESKMIEYDPERRLGIFWVSCEAGTYIRTLCVHLGLL 236 Query: 191 LGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG G + LRR+ + MVT+ + + Q + L ++ P++ + Sbjct: 237 LGVGGQMQELRRVRSGVMSEKDHMVTMHDVLDA--QWLYDNHKDESYLRRVVYPLEKLLT 294 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEID--- 298 + + + ++ G + G + +V +T + + + Sbjct: 295 SHKRLVMKDSAVNAICYGAKIMLPGVLRYEDGIEVNQEIVVITTKGEAICMAIALMTTAV 354 Query: 299 ----DEGRV-APRRLVVEY 312 D G V +R+++E Sbjct: 355 ISTCDHGIVAKIKRVIMER 373 >UniRef50_A9UQA2 Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis RepID=A9UQA2_MONBE Length = 212 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 69/208 (33%), Positives = 98/208 (47%), Gaps = 6/208 (2%) Query: 33 KRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDAD 92 KR + GH G LD A G+L I +G ATK L DK Y LG+RT T D D Sbjct: 1 KRKQPKLKVGHGGTLDAEAEGVLVIGVGGATKQLSQFLACDKSYEFDVELGRRTTTLDVD 60 Query: 93 GQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREAR 151 G++ E P +A+ L AAL+ F GDI QIP YSAL+ GK+L ++AR G V + R Sbjct: 61 GEVEAEAPFEHVTADMLQAALNEFVGDIMQIPPRYSALRIDGKRLSDHARSGTPVDPQPR 120 Query: 152 PITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV- 210 P+ V + + + C G Y+R++ DL K+ HV L R ++ + Sbjct: 121 PVRVLAAQLQAYVAPVATIAVTCGGGFYVRSLARDLAWKVQSEGHVTRLVRTRQGRFDLS 180 Query: 211 ----ERMVTLEHLRELVEQAEQQDIPAA 234 E T L + +++ Sbjct: 181 AALPEDAWTPAQLEAALAANNKREEQHL 208 >UniRef50_A7GZ93 tRNA pseudouridine synthase B n=16 Tax=Campylobacter RepID=TRUB_CAMC5 Length = 273 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 29/292 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N + + +KP G+SSN L ++KR Y +AG +G LDP A+G L + G TKF ++L Sbjct: 1 MNAIFVANKPTGLSSNQFLNRLKRKYGVKKAGFSGTLDPFASGCLIVAFGSYTKFFRFLD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y +G + + D + + F+ E L A + G ++ IP +SA Sbjct: 61 KTPKIYEATMWIGASSPSGDNENITDVKILKPFADESLEIARKSLLGRLKYIPPKFSAKN 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y+ AR G E + + + V+ + + L I S+G Y+R+ G++ Sbjct: 121 INGTRAYKLARTGEEFSLKEQEMEVFSCEILSYRHPFLTFRISLSEGGYVRSYAQLFGKR 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG + L+R++ K+ E + + E ++P + L Sbjct: 181 LGYDVCLSELKRISEGKFRFEN-------EKFLNICEILNLPRNKYLG------------ 221 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 +G ++ S + + E KF+ + EI ++ Sbjct: 222 ---------DVADIMDGKSLKPSDFTTQKDG-IYLLEYDKFLSIIEIKNDTI 263 >UniRef50_Q1CVV6 tRNA pseudouridine synthase B n=2 Tax=Cystobacterineae RepID=Q1CVV6_MYXXD Length = 302 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 97/204 (47%), Gaps = 8/204 (3%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAG------HTGALDPLATGMLPICLGEATKFS 66 G+ + KP G +S +Q+ A + G H G LDP A G+L + +G+A + Sbjct: 8 GIYRVHKPVGATSFSVVQRFMEEAKAVQPGKRIPVCHGGTLDPFAEGLLLVLVGQAPRLF 67 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQ-IVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 + L K Y G TDT D G+ +++ + L AAL +F G EQ+P Sbjct: 68 ELLHAVPKVYEAEVVWGTETDTGDLHGRPVLQGDTAALTPGALDAALASFVGWREQVPPA 127 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE-LEIHCSKGTYIRTII 184 SA K G+ Y A +G V + ++ ++ H+ L + C G Y+R++ Sbjct: 128 TSAKKVGGEPAYRKAHRGEAVELPPSRVYLHAARWLSHDLPRASRLWLSCRGGYYVRSLA 187 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKY 208 D+G LGCGAH+ LRR A+ + Sbjct: 188 RDVGRALGCGAHLSTLRRTAIGPW 211 >UniRef50_Q7M9J1 tRNA pseudouridine synthase B n=3 Tax=Helicobacteraceae RepID=TRUB_WOLSU Length = 291 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 74/293 (25%), Positives = 122/293 (41%), Gaps = 29/293 (9%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 N + + KP MSSN LQ++KR + +AG++G LDP A G+L + G T+ +L Sbjct: 20 NALFVGYKPMFMSSNHYLQRLKRRFGVKKAGYSGTLDPFAKGVLVVAFGHYTRLFDHLNQ 79 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR LG +D+ D + + E +S E++ + G+I P Y A + Sbjct: 80 EPKVYRATLWLGLHSDSLDIENILGVEVIPPYSKERVEEIMGALEGEISYTPPKYCAKRI 139 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 G++ Y+ AR EV + V L + + + E SKG+YIR++ + +L Sbjct: 140 GGRRAYDMARNKEEVELPILTMRVGRLSLLHYTHPFVHFEAEVSKGSYIRSLGGMIASRL 199 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GC + L RL+ + E LE L ++P Y Sbjct: 200 GCYGALSSLERLSEGEMRFEGYRELEPLE--------------------ILP-------Y 232 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 P ++ + F +G + S + E +F + EI + V Sbjct: 233 PKIDAT-SLKEEFLHGKKLLASDLGNPKEGK-YIAEFEEFFSIIEIKEGQVVY 283 >UniRef50_B5Y924 tRNA pseudouridine synthase B n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y924_COPPD Length = 290 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 78/305 (25%), Positives = 118/305 (38%), Gaps = 24/305 (7%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 ++++G L KP+G+ L KVK +AG+ GALDP A G++P+C+G A +FS + Sbjct: 2 QELDGFLWTIKPRGLKPMAFLSKVKSALGVKKAGYVGALDPFAWGLMPVCIGRACRFSDF 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 L K Y + + G TDT D G ++ S E L LDT RG +E S+ Sbjct: 62 FLSLPKTYVCVLQFGLETDTWDITGNVINLSEHRPSVEALKECLDTLRGQVEYPIPPLSS 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYE------LLFIRHEGNELELEIHCSKGTYIRT 182 K GK+LY G V V + L + L SKGTYIR Sbjct: 122 KKVNGKRLYYLFYDGKPVTGLKGIAHVSKSLLLEVLESNEKGIEKATLLFEVSKGTYIRG 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +G+ L V L R+ + + V L+ + ++ Sbjct: 182 LAKKIGDMLNVPCVVSELARVKIGHISISAGVPLQDVDPG-----------------KVI 224 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 D S P + + + V S + F+G+G I G Sbjct: 225 STDEALSFLPDIPVQGAVEKRLRQSGRVDYSMSVSSASSYYRIWGTHGFLGVGRIST-GE 283 Query: 303 VAPRR 307 + R Sbjct: 284 LVMER 288 >UniRef50_B9L8F5 tRNA pseudouridine synthase B n=5 Tax=Epsilonproteobacteria RepID=B9L8F5_NAUPA Length = 294 Score = 197 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 69/307 (22%), Positives = 118/307 (38%), Gaps = 39/307 (12%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKF 65 R N + + +KP +SSN L ++KR Y + G +G LDP A G L I G+ T+ Sbjct: 7 RMENCKNILFVANKPIFVSSNKFLNQLKRKYGIKKMGFSGTLDPFACGCLIIASGQYTRL 66 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 ++L + K Y LG + + D + + F + + L F G +Q+P Sbjct: 67 FRFLKKTPKTYIATLMLGAYSPSLDIEKIETITQIDPFEKDLIINTLKEFLGKQKQLPPK 126 Query: 126 YSALKYQGKKLYEYARQGIEVP----------REARPITVYELLFIRHEGNELELEIHCS 175 YSA + G++ Y + I ++++ I + + + S Sbjct: 127 YSAKRINGQRAYNLIENAELRIENNISQNVYLEKEIDIEIFDIELINYSHPFITFKASVS 186 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 +GTYIR++ D+ +KLG + YL R+ K+ E E L E + + Sbjct: 187 EGTYIRSLGFDIAKKLGVDGALTYLERVNEGKFHYE----CEKLLNPTEYLDLDENVYLG 242 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMG 295 ++ L++ L KNG + +F + Sbjct: 243 DIENLIL----------GRKLNANDFKIKKNGQ---------------YYVKFDRFFAII 277 Query: 296 EIDDEGR 302 EI DE Sbjct: 278 EIQDEKV 284 >UniRef50_P59879 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma gallisepticum RepID=TRUB_MYCGA Length = 218 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 107/208 (51%), Gaps = 1/208 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 N ++++DKP+ +SS L K+ +N +AGH G LDPLA+G+L + + TK L Sbjct: 9 NKIVIIDKPKNISSAFCLNLFKKRFNIKKAGHNGTLDPLASGVLVVATNKRTKELSQLNQ 68 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRG-DIEQIPSMYSALK 130 DK+Y V + TD+ D G+++ +QL L + Q+P +SALK Sbjct: 69 DDKQYLVKLKFNTHTDSYDRLGKVIRTTNYVPEIKQLNDYLTSLDNHSFYQLPPNFSALK 128 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y+ AR+ ++ E RP T+Y+ I + + E+ + KG Y+R+ + DL + Sbjct: 129 VNGVRAYQLARKAVDFELEKRPTTIYKAKLISYYDDYAEILLDVKKGFYVRSFVVDLASQ 188 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEH 218 A ++ L R +Y ++ ++ + Sbjct: 189 FNTTAMMVDLVRTRSGQYSLKDVIDYQF 216 >UniRef50_Q30TG2 tRNA pseudouridine synthase B n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=TRUB_SULDN Length = 273 Score = 197 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 71/290 (24%), Positives = 123/290 (42%), Gaps = 30/290 (10%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N + + KP G+ SN L ++KR Y +AG +G LDP A G+L I +G TK ++L Sbjct: 1 MNRLFVAYKPAGIGSNLFLSRIKREYKTKKAGFSGTLDPFAKGVLIIGMGSYTKLFRFLA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K YR LG ++DT D + E F + A+ + G +E P ++SA + Sbjct: 61 KAPKVYRATLWLGAKSDTLDTEMIEEVEILEEFDEADVLKAIKSLEGSLEYEPPIFSAKQ 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G++ Y+ AR G+E T+YE + + + E S+GTYIR++ + + Sbjct: 121 INGQRAYDLARAGVEFSLNKINSTIYETKLVSYCHPFVTFEAIVSEGTYIRSLGLIIANR 180 Query: 191 LGCG-AHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG + L RL+ ++ + L+ + L M + Sbjct: 181 LGVKNGSLSALERLSEGRFKYDNHKPLD-------------------IKKSLNMMQNFYH 221 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 S K G + + ++ ++G FI + + D Sbjct: 222 G---------DSDNLKYGRVLALNDLEIKSDG-FYWLDSGSFISIIHVKD 261 >UniRef50_C5J6V5 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6V5_MYCCR Length = 286 Score = 197 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 34/299 (11%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 + LL KP G+SS + + + + GHTG LDPLA G++ I + TK +Y+ + Sbjct: 2 IKLLYKPSGISSFKFITRFAKDNKIQKIGHTGTLDPLARGLMLIATDDDTKLIEYIDKGE 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE-QIPSMYSALKYQ 132 K Y G+ + T D +GQI ++ I+ Q P ++SA K Sbjct: 62 KEYIADFYFGKISTTYDIEGQISNYLGAKKVDKEALLLALANLAVIQVQKPPIFSAKKLN 121 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 190 G + Y A+Q + + PI +++ + + ++ S+GTYIR++I DLG Sbjct: 122 GVRAYSLAQQQKNIELKDIPIKIFDWELLDFDYQNQSGKVRWVVSRGTYIRSLIHDLGFM 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L GA + L R ++ LD + P++ + Sbjct: 182 LKSGAIMSGLERTKIAHLD------------------------KTFLDLEINPINLINKE 217 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 V + + G + + E ++ +GK IG+G I + +L Sbjct: 218 I--VKINFSELKKIFQGYKIPFFTSSGEKIII----YDGKIIGIGAI-ANNVLFSSKLF 269 >UniRef50_B3L1T9 Trna pseudouridine synthase, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L1T9_PLAKH Length = 478 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 34/252 (13%) Query: 3 RPRRRGRDIN-----GVLLLDKPQGMSSNDALQKVKRIYNA-----------NRAGHTGA 46 + +++ ++ G+L + KP S ++VK + + GH G Sbjct: 216 KKKKKEATLDDILYGGLLNIYKPVNTYSMKVCERVKGVLKEHFKHVCKMNLNFKVGHGGT 275 Query: 47 LDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP------ 100 LDP A G+L I + + TK L K+Y + G TDT D +G +V+ Sbjct: 276 LDPFAEGVLVIGIQKGTKKLSDFLKCYKKYLALGLFGLETDTLDREGNVVKISNEMMKGK 335 Query: 101 VTFS----------AEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREA 150 + + + + L+ G + Q P +YSA + G +LYEYAR+ I V + Sbjct: 336 IPQTGTNTHDTLTLKKNIIHTLNRLIGHVYQTPPLYSAKRVHGMRLYEYARKKIPVHIKP 395 Query: 151 RPITVYELLFI-RHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSK-Y 208 + + L ++ + + +L+I CS GTYIR+++ D +L A +I L R+ + + Sbjct: 396 SKVHIQNLKYLNQVDLPFFDLDIKCSGGTYIRSLVRDFAHELNTHATLIKLIRIQQGEQF 455 Query: 209 PVERMVTLEHLR 220 E + + + Sbjct: 456 LYEHSLHYDDIN 467 >UniRef50_A9CM09 Cbf5 (Fragment) n=2 Tax=Thermofilum RepID=A9CM09_THEPE Length = 229 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 37/251 (14%) Query: 28 ALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTD 87 + ++++ R H G LDP +G+LPI L A + LL DK Y + RL Sbjct: 1 VVAWLRKLLGIERIAHAGTLDPKVSGVLPITLNNAVRVLPVLLKEDKEYVCVMRLHG--- 57 Query: 88 TSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP 147 E+L + F+G I Q P + SA+K Sbjct: 58 --------------DVDPERLERVVSMFKGRIYQRPPLRSAVK----------------- 86 Query: 148 REARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSK 207 RE R +Y++ + L + C GTY+R + D+GE LG GAH+ LRR+ Sbjct: 87 REVRIRQIYDIRLLEFNERTALLHVWCEAGTYMRKLCHDIGEILGVGAHMQELRRIRSGS 146 Query: 208 YPVE-RMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKN 266 + T+ + + +++ I L + +P+++ P V + ++ + Sbjct: 147 LYEDRNCSTMHDVVDAYYIWKERGIDHF--LRQVFLPVEAAIQHLPKVWIRDSAVDAVCH 204 Query: 267 GNPVRTSGAPL 277 G P+ G Sbjct: 205 GAPLAVPGIVK 215 >UniRef50_B6K5T9 tRNA pseudouridine synthase n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5T9_SCHJY Length = 359 Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 136/316 (43%), Gaps = 87/316 (27%) Query: 11 ING-VLLLDKPQGMSSNDALQKVKRIYNA----------------------------NRA 41 +NG ++ ++KPQG++S L ++K I + + Sbjct: 1 MNGGLIAVNKPQGVTSAQCLNQLKAIISDSPLAKYFRSPAPHPNDRNRRRRKKHSLDIKI 60 Query: 42 GHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV 101 GH G LDPLA+G+L + LG TK LL K Y +A G+ TDT D+ G+IVE Sbjct: 61 GHGGTLDPLASGVLVVGLGSGTKQLSKLLSCKKVYETVALFGRSTDTYDSSGKIVESAEH 120 Query: 102 TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP--REARPITVYELL 159 + E++ AL +F+GDI Q+P +YSAL GK+LYEYAR+G+ +P +ARP+ +++ Sbjct: 121 VPTKEEIETALPSFKGDIMQMPPIYSALHVNGKRLYEYAREGLPLPDSVKARPMHCFDVE 180 Query: 160 FIRH---------EGNELEL---------------------------EIHCSKGT----- 178 + + + E+ ++GT Sbjct: 181 MTKFMSKGEHTYCDPDNFFELEAAEEGAEENKDSEKKNKQGKKRKFNEVDLTRGTREPIG 240 Query: 179 -------------YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER--MVTLEHLRELV 223 Y+R+ ++DLGEK+ +H++ L RL + + + ++E Sbjct: 241 PAASFRLTVSSGFYVRSFVNDLGEKVNSKSHMVELVRLQQGDFELNKPGCFSMEEFHSGE 300 Query: 224 EQAEQQDIPAAELLDP 239 + D L D Sbjct: 301 WLKKLADYFKLSLDDE 316 >UniRef50_B9ZCE8 Pseudouridylate synthase TruB domain protein n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9ZCE8_NATMA Length = 314 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 75/298 (25%), Positives = 111/298 (37%), Gaps = 56/298 (18%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNA-----------------NRAGHTGALDPLATGML 55 GV+ LDKP G SS+ ++ ++A H G LDP TG L Sbjct: 23 GVVNLDKPPGPSSHQVSGWLRDAVADALAEADQSEDSDTSPTIDQAAHAGTLDPKVTGCL 82 Query: 56 PICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF 115 P LG+AT+ +Q L+ K Y + + + + F Sbjct: 83 PTMLGDATRLAQVFLEGHKEYVAVLECHGSIP------------------ADVESTVAEF 124 Query: 116 RGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCS 175 G I Q P SA V R R +YEL + +L L I C Sbjct: 125 EGPIYQKPPRKSA-----------------VSRRLRVREIYELDVLEQGDRQLLLRIRCE 167 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 GTY+R + DLG LG G H+ +LRR A S + + T + + + D Sbjct: 168 SGTYVRKLCHDLGLALGTGGHMGHLRRTATSPFDDTDLYTATEFLDALAFWLEDD--DPS 225 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIG 293 LL ++ P + + P + + T++ G PV G +V T E G + Sbjct: 226 LLYDIVDPAERILEEIPHLVIDSTAAREVAEGAPVYAPGVR--KVVADTALERGDLVA 281 >UniRef50_C3XI25 tRNA pseudouridine synthase B n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XI25_9HELI Length = 361 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 58/287 (20%), Positives = 113/287 (39%), Gaps = 20/287 (6%) Query: 19 KPQGMSSNDALQKVKRIYNA-----NRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 KP +SS +K+ + G +G LDP A GML + + TK ++ Sbjct: 11 KPPNISSLSFANMLKKGLKELGYPVKKIGFSGTLDPFAHGMLILGVNHYTKLLSHIRKDY 70 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y+ + LG + + D + + + +S E++ A+ +G+I P +SA G Sbjct: 71 KTYKAVLFLGLESKSLDIENIVCLHQIKPYSHEEIEKAIQNIQGNISYKPPKFSAKHING 130 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 + YE R+GI+ + + + + + L E+ S+G YIR+I + + + LG Sbjct: 131 VRAYELMRKGIDFDIDTITTDIKYIKILNYSHPFLSFEVCVSEGGYIRSIGEIIAKNLGI 190 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL-------DPLLMPMDS 246 + L R+ ++ + M L+ + I + +++ + + Sbjct: 191 CGSLCSLERVQEGEWNYKNM--LKDSMTHKQNNVLGCIEVPLQIQGIRQNAKVIILNIKN 248 Query: 247 PASDYPVVNLPLTSSVYFKNGNPV----RTSGAPLEGLVRVTEGENG 289 Y + L + NG +VRVT+ + Sbjct: 249 AL-KYDTIQLT-EYAKIAYNGAKFILNPSLCAKIFSDMVRVTDSKKD 293 >UniRef50_B2VX57 tRNA pseudouridine synthase B n=2 Tax=Pleosporineae RepID=B2VX57_PYRTR Length = 344 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 104/281 (37%), Gaps = 51/281 (18%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIY----------------------NANRAGHTG 45 + + GV + KP +SS D L K++ + R GH G Sbjct: 6 EKVLEGVFAVAKPAHVSSADVLLKLQATFASSVTFAPLLRTQPKRTSKSSDQVFRLGHGG 65 Query: 46 ALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFS 104 LDPLA G+L + +G TK L K Y G TD+ D G I E + Sbjct: 66 TLDPLAAGVLIVGIGRGTKSLSQYLLCSKTYETTVLFGASTDSYDCTGLITERAECAHIN 125 Query: 105 AEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIE--VPREARPITVYELLFIR 162 + + L FRG I+Q+P +YSALK G K EY RQG E E+R + V E ++ Sbjct: 126 RKLVEEKLQDFRGTIQQVPPVYSALKINGMKACEYVRQGKELPRELESREMQVDECTLLQ 185 Query: 163 HEG-----------------NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAV 205 + + G Y+R+ DLG +H+ L R Sbjct: 186 WYEAGEHKFAWPGEEKPAPAPAARIRLTVCSGFYVRSFAHDLGMACNSLSHMTNLLRTRQ 245 Query: 206 SKYPVER---------MVTLEHLRELVEQAEQQDIPAAELL 237 + Y ++ +T L + + P E Sbjct: 246 ANYTIDNLPESSDLTPALTYLDLEAGEDVWGSKLRPQLEKW 286 >UniRef50_Q18GM5 tRNA-pseudouridine synthase n=1 Tax=Haloquadratum walsbyi DSM 16790 RepID=Q18GM5_HALWD Length = 339 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 72/299 (24%), Positives = 108/299 (36%), Gaps = 67/299 (22%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV+ LDKP G S++ V+ + RA H G LDP TG LPI LGEAT+ + L+ Sbjct: 23 GVVNLDKPVGPSAHQVSAWVRDLIGVERAAHAGTLDPKVTGCLPILLGEATRLAPVFLEG 82 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + + L+ ++TF G I Q P SA+ Sbjct: 83 TKEYLAVLEFHGPPPS------------------DLSMIIETFEGTIYQKPPRKSAV--- 121 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 ++L R I ++L + + + L I C GTYIR + DLG G Sbjct: 122 SRRL------------RKRTIETLDILEVDSDAQQALLRIRCESGTYIRKLCHDLGLAAG 169 Query: 193 CGAHVIYLRRLAVSKY---------PVERMV--TLEHLRELVEQAEQQDIPAAEL----- 236 GAH+ LRR + + + V TLE + + + Sbjct: 170 TGAHMGDLRRTGTTPFSDTNLISTADLTDAVVFTLEEIVRANQTQINDAPDDSTAAYSLL 229 Query: 237 ------------------LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL 277 L ++ P + P V + +++ G PV G Sbjct: 230 HKINTANIDPNSTSPTDHLRNVISPAERALQHLPTVIIAPSAAAEVAMGAPVYAPGVIE 288 >UniRef50_D1J822 tRNA pseudouridine synthase B n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J822_MYCHP Length = 287 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 3/214 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 L K +G SS A++K + N N+ GH G LDP A G+L + E TK + + + Sbjct: 2 FYKLYKKRGQSSFFAIKKFAKNNNINKVGHCGTLDPEAEGLLIVATDEDTKALSLIENQN 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y V A+ +D+ D + + + + Q+ AL+ + +Q+P +YSA K Sbjct: 62 KEYYVEAKFHYSSDSFDLGTYVTKIQNFQIITKSQIIQALEILKKQTKQVPPIYSAKKIN 121 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 190 G + Y+ AR E +A I + L I + ++++ SKGTYIR++I DL Sbjct: 122 GTRAYKLARDNKEFSLKANDIKINNLELIEFNEVNQSIIIKVNVSKGTYIRSLIHDLANI 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 A V+ L+R+ + + E + L E Sbjct: 182 CNTDAVVVVLKRIKIGNICLNGQEEFEKITNLNE 215 >UniRef50_B8CCU3 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8CCU3_THAPS Length = 186 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 62/184 (33%), Positives = 94/184 (51%), Gaps = 19/184 (10%) Query: 40 RAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER 99 + GH G LDPLA+G+L + +G+ T Q L+ DK+Y + LG T T DA+G +V+E Sbjct: 3 KVGHGGTLDPLASGVLVLGIGKGTTQLQSYLEGDKQYVAVCELGYETTTLDAEGDVVKEM 62 Query: 100 PVTFSAE-------------QLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQG--- 143 + L F+G I+Q+P +YSA++ GK+LYE AR+G Sbjct: 63 EWAHVKSVKGGSDSDSTNTSSVEGVLSKFQGKIQQVPPLYSAIRVDGKRLYEIARKGDVN 122 Query: 144 -IEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYL 200 +V R + VY + E + LE+ C GTYIR+++ D+G +L A + L Sbjct: 123 SDDVEIPTREVEVYGVKAYNCTLELPQFALEVQCGGGTYIRSLVRDIGYELDTVATMTGL 182 Query: 201 RRLA 204 R Sbjct: 183 VRTK 186 >UniRef50_Q4A5J8 TRNA pseudouridine synthase B n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A5J8_MYCS5 Length = 287 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 63/301 (20%), Positives = 125/301 (41%), Gaps = 26/301 (8%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 ++KP + N ++ + NA + G +G LDPLA+G++ + TK QY+ + Sbjct: 2 FYKINKPTNVFCNKYIRSWAKENNAEKIGQSGTLDPLASGLVIMATNSDTKILQYVKNQP 61 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y ++T D+DG++ + + ++L A+ + Q+P +S+ K +G Sbjct: 62 KVYLAKMEFNLFSNTLDSDGEVKKLNYKKVTLQKLEKAIVKIKKQTYQMPPQFSSKKVKG 121 Query: 134 KKLYEYARQGIEVPREARPITVYELLFI--RHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 KK + A + I + + + I ++ + E E+ S GTYIR+I DL + Sbjct: 122 KKALDLAYKNIAIKLKKQKIKIFSFELLEFNFEKQYAVFEVSVSSGTYIRSIAKDLAKYC 181 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 A + L+R ++ + L+ + E+ +I + + ++ Sbjct: 182 NSSAILTSLKRKSIDNIFLND---LKE-----NEFEKLNIKNLFNIKMHSLSIE------ 227 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVE 311 KNG V + E + + + + K + G+I P+ + VE Sbjct: 228 --------DLNKLKNGQRVFLNYL-NEKVFFIVDKNSAKVLATGKI-KNKYFYPKNVFVE 277 Query: 312 Y 312 Sbjct: 278 R 278 >UniRef50_B0CSL3 Predicted protein n=3 Tax=Agaricales RepID=B0CSL3_LACBS Length = 334 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 77/332 (23%), Positives = 128/332 (38%), Gaps = 87/332 (26%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYN----------------------- 37 M + ++G+ + KP G +S + ++++ Sbjct: 1 MPKISLPALPVSGLFGIIKPSGPTSMSVIHDLQQLIGRSKLFVEAEKLEAAKNNKASKRK 60 Query: 38 ------ANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDA 91 A + G G LDPLA G+L + +G+ TK L+ K YR LG TD+ D+ Sbjct: 61 DKRSRDAVKIGQGGTLDPLADGVLVVGVGKGTKKLSDFLNCTKEYRTTCLLGCETDSYDS 120 Query: 92 DGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPRE- 149 G V P + EQ+ AAL F G+I Q+P ++SALK G+ LYEYAR+G+ +PR Sbjct: 121 KGSRVRLAPWHHVTREQVEAALPKFIGEISQVPPIFSALKMDGRPLYEYARKGLPLPRPI 180 Query: 150 -ARPITVYELLFIRHEGNELELE------------------------------------- 171 R +TV+ L + +G + Sbjct: 181 EPRKVTVHSLELVEWKGQDHTFRWPEKSFSEAEKKAMQTALEGANEPVSLQDEPESDVDD 240 Query: 172 ---------IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER--------MV 214 + S GTY+R+I+ DL +G HV+ L R ++ +E+ V Sbjct: 241 KVPIAFVLKMKVSGGTYVRSIVHDLAHAIGSAGHVVTLTRSRQGRFVLEKPEEEEDRTCV 300 Query: 215 TLEHLRELVE-QAEQQDIPAAELLDPLLMPMD 245 E + E + + ++ ++ Sbjct: 301 PWEVIEAASAGSCEVDEEGWTKWEREVIERLE 332 >UniRef50_C7H129 tRNA pseudouridine synthase B n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H129_9FIRM Length = 365 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 28/228 (12%) Query: 95 IVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPIT 154 I E+ S EQ+ +AL G Q P +SALK GKKLYEYAR+G +V R + Sbjct: 149 ISEKVVSNISKEQVESALLNMIGINMQEPPAFSALKLNGKKLYEYAREGKKVELRPREVD 208 Query: 155 VYELLFIRHEG--NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER 212 + E+ ++ + + SKGTY+R+I +DLG+ LG GA + L R ++ ++ Sbjct: 209 IKEIELLKFDETSQAGSFKALVSKGTYVRSICNDLGKALGSGACMTSLVRTKSGRFNLDN 268 Query: 213 MVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT 272 V + + E E D+ SD+ V+L + F+NG + Sbjct: 269 AVRIIDITEDTELHRW----------------DAGLSDFGRVSLDTVRAQGFRNGLNLEI 312 Query: 273 SGAPLEGL----------VRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 + + + V E+ +GM E+ + + R++V Sbjct: 313 AESEMRKPCENAGKFKRHYVVECREDKALLGMAELTADNFIKHRKVVC 360 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 35/87 (40%), Positives = 57/87 (65%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 R+ NG+L++DKP G++S+D + V+++YN + GH G LDP+A+G++ + +G AT+ + Sbjct: 2 KRENNGILVIDKPVGLTSHDCVSMVRKVYNIKKVGHAGTLDPIASGVMVLFVGNATRMIE 61 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQ 94 Y + K Y +LG TDT D GQ Sbjct: 62 YYGEDYKEYECGFKLGFSTDTYDITGQ 88 >UniRef50_Q980C3 Probable tRNA pseudouridine synthase B n=14 Tax=Sulfolobaceae RepID=TRUB_SULSO Length = 251 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 54/276 (19%) Query: 54 MLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALD 113 MLPI + ATK Y+ K Y + ++ + E+LA + Sbjct: 1 MLPIGIENATKIMNYISKGGKEYVCVMQVHCEYN-----------------KEELAKIIS 43 Query: 114 TFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIH 173 +F+G+I Q P + S++K R R +Y++ + + + L ++ Sbjct: 44 SFKGEIYQRPPVRSSVK-----------------RRLRIRRIYDIEILDMDKKLVLLRVN 86 Query: 174 CSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIP 232 C GTY+R + D+G GCGAH+ LRR + +V L L E + ++ Sbjct: 87 CDSGTYMRKLCHDIGIIYGCGAHMRELRRTRSGIFTESTNLVKLHELSEAIYL--YKNCK 144 Query: 233 AAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS------GAPLEGLVRVTEG 286 L +L+PM+ + P + + ++ G + V V Sbjct: 145 DETELRRVLIPMEFATCEIPKIVIEDSAVNALAYGAQLAVPGVVAYQNFKKNDTVAVLTL 204 Query: 287 ENGKFIGMG---------EIDDEGRVA-PRRLVVEY 312 G+ + G E +G V R+ ++ Sbjct: 205 -KGELVATGNALMDSEELENAKKGIVVNLSRVFMQR 239 >UniRef50_B9WH58 tRNA pseudouridine synthase, putative n=6 Tax=Saccharomycetales RepID=B9WH58_CANDC Length = 386 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 75/287 (26%), Positives = 128/287 (44%), Gaps = 57/287 (19%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN------------------------------- 39 +NGV + KP G++S ++ ++ + + Sbjct: 1 MNGVFAVYKPSGITSAKFIETIQSKFTKSEVFAKDLQEMKDKIRSDLSRDRKWKPHKIEK 60 Query: 40 -------RAGHTGALDPLATGMLPICLGEATKFSQYLL-DSDKRYRVIARLGQRTDTSDA 91 + GH G LDPLA+G+L + +G TK QY L + K Y A LG T T D+ Sbjct: 61 KIASTKVKIGHGGTLDPLASGILVVGVGLGTKKLQYYLAECQKTYETKALLGISTTTGDS 120 Query: 92 DGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP--R 148 +G+IV + + ++E + + ++ F GDI+Q P ++SALK GK LYEYARQG+ +P Sbjct: 121 EGEIVSKNKIDHITSELIDSTVEKFIGDIKQTPPIFSALKVNGKPLYEYARQGLPLPTNI 180 Query: 149 EARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKY 208 + R +TV + I+ + + + E + +L E H L+ Sbjct: 181 KVRDVTVNSITVIKEDSLKTDHEFT--------KLESELDENGVPKEH--GLK-----DN 225 Query: 209 PVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVN 255 P L ++ +E+AE++ +P LL +S P+++ Sbjct: 226 PTLNDSPLFFSKQYLEKAEKEGLPKETGKPKLLPDDESLPEKLPMIH 272 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 36/96 (37%), Gaps = 1/96 (1%) Query: 159 LFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV-ERMVTLE 217 + + + S GTYIR++I D+G + A+++ L R S++ + + + LE Sbjct: 262 ESLPEKLPMIHFISDVSSGTYIRSLISDIGRAMESSAYMVELIRTKQSEWELGKNVFRLE 321 Query: 218 HLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPV 253 + E + ++ + Sbjct: 322 DFEKDERIWGPVLKKVFEKGGSEIQDLNKEFEEMSK 357 >UniRef50_UPI0001976FFF Pseudouridine synthase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI0001976FFF Length = 430 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 54/249 (21%), Positives = 96/249 (38%), Gaps = 47/249 (18%) Query: 105 AEQLAAALD-TFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH 163 +++ + G IEQ+P+ +SA+K G++ Y+ AR G +V +AR ITV + Sbjct: 183 RDRIDDIIALQLTGSIEQVPNTFSAIKINGQRAYDLARDGKDVQLKARRITVSAFGVLDV 242 Query: 164 EG--------------------------------NELELEIHCSKGTYIRTIIDDLGEKL 191 ++++ + CS GTYIR + DLG L Sbjct: 243 RFGYAPTRQLGLPLVSAADGRATTERDDAEATPVIDVDVRVSCSAGTYIRALGRDLGAAL 302 Query: 192 GCGAHVIYLRRLAVSKYPVE--RMVTLE-HLRELVEQAEQQDIPAAELLD--------PL 240 G G H+I LRR V + V ++T RE ++ +LD Sbjct: 303 GVGGHLIRLRRTRVGGFDVSSPNVITAHVETREYTDRNGNHQSRNRAVLDVIGDELAGKA 362 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 L +D+ P++ + +V + G + + G ++G+ + + E Sbjct: 363 LTMLDAARGTMPLLAITDQDAVNLRYGRRIPYD---IHGTAAAYLPQSGEVVALVERAKR 419 Query: 301 GRVAPRRLV 309 G P + Sbjct: 420 GEAKPATVF 428 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 4/107 (3%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 +G+L++DKP+G++S+D + + + + GH G LDP+ATG+L + G AT+ Sbjct: 29 PATPTSGLLVVDKPRGVTSHDIVAAARGALHMKKVGHAGTLDPMATGVLVVGFGNATRLL 88 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALD 113 ++++ DK Y RLGQ T T DADG+++ S E+ L Sbjct: 89 NHIVEHDKTYEATIRLGQSTTTDDADGELLSAT----SPERWQELLA 131 >UniRef50_Q4PA06 Putative uncharacterized protein n=2 Tax=Ustilaginomycotina RepID=Q4PA06_USTMA Length = 446 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 103/242 (42%), Gaps = 46/242 (19%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIY-------------------------------- 36 R ++G+ ++KP G +S L +K ++ Sbjct: 59 RPLSGIFGINKPSGPTSMSLLDDLKPLFATSPLFADADGNRVNDKSRKRGKFGAKGKAKW 118 Query: 37 -----NANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDA 91 A + G G LDPLA G+L I +G TK Q LD K YR LG T + D+ Sbjct: 119 AGGVAGAPKIGQGGTLDPLADGVLVIGVGNGTKHLQKYLDCTKEYRSTGLLGSATTSYDS 178 Query: 92 DGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPRE- 149 I+ +P + + +A L F G + QIP +YSA++ GK+L+EYAR+ + +PR Sbjct: 179 CDPILTRKPFDHVTPQMIAHLLPRFTGAVLQIPPLYSAVRMDGKRLFEYARENLPLPRPI 238 Query: 150 -ARPITVYELLFIRH------EGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRR 202 AR +T++EL + E + E+ + ++ G K G V + Sbjct: 239 EARRVTIHELRLVDWLEPGKHAFKEPQREVPPEDKALVGRVLHMAGRKEGQTDTVKEVDA 298 Query: 203 LA 204 A Sbjct: 299 TA 300 Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 23/44 (52%) Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE 211 LE+ S GTY+R+I+ DL G AHV L R ++ + Sbjct: 344 FVLEMTVSSGTYVRSIVHDLALAAGSAAHVQTLTRTRQGEWSIN 387 >UniRef50_A2Q7V7 Contig An01c0080, complete genome n=15 Tax=Leotiomyceta RepID=A2Q7V7_ASPNC Length = 401 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 63/186 (33%), Positives = 90/186 (48%), Gaps = 35/186 (18%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYN--------------------------------ANR 40 GV + KPQG+SS D ++ ++ +N + Sbjct: 9 GVFAVHKPQGVSSADVVRTLQTHFNPSTLFAPWLADERARRARESTYQRKRRRTQRLDVK 68 Query: 41 AGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP 100 GH G LDPLATG+L +G+ TK L K+Y + G TDT D G++V + P Sbjct: 69 IGHGGTLDPLATGILVAGVGKGTKHLNEFLGCTKQYETVVLFGAETDTYDRLGKVVRKAP 128 Query: 101 V-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIE--VPREARPITVYE 157 + E + AL+ FRG I Q P ++SALK GKKLYEYAR+G E + + RP+ V + Sbjct: 129 YEHVTREMVEKALEQFRGKIMQRPPIFSALKVNGKKLYEYAREGKEPPIEIQKRPVEVTD 188 Query: 158 LLFIRH 163 L + Sbjct: 189 LRIVEW 194 Score = 58.0 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV--ERMVTLEHLRELVEQ 225 +++ + S G Y+R++ DLG+ +G + L R +++ + ++++ + L E Sbjct: 313 VKITMTVSSGFYVRSLAHDLGKAVGSCGLMSSLIRSRQAQFELHPDKVLEYKDLEAGEEV 372 Query: 226 AEQQDIPAAELLDPL 240 + E + Sbjct: 373 WGPKVQRFLEDWEEK 387 >UniRef50_B7Z7G5 cDNA FLJ52131, highly similar to Homo sapiens TruB pseudouridine (psi) synthase homolog 2 (TRUB2), mRNA n=8 Tax=Amniota RepID=B7Z7G5_HUMAN Length = 275 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 7/211 (3%) Query: 40 RAGHTGALDPLATGMLPICLGEATKFSQYLLDSD--KRYRVIARLGQRTDTSDADGQIVE 97 + G LD A+G+L + +G + + ++ K Y V LG+ TD DG++VE Sbjct: 34 KVGVGHRLDAQASGVLVLGVGHGCRLLTDMYNAHLTKDYTVRGLLGKATDDFREDGRLVE 93 Query: 98 ERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVY 156 + + E+L L +G ++ MYS L + ++ YE A +G+ P P+ + Sbjct: 94 KTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLIT 153 Query: 157 ELLFIRHEGNELELEIHCSKGTY--IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV 214 + + E LE+ C T +R ++ ++G +L A +RR + ++ + Sbjct: 154 GIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGLELKTTAVCTQVRRTRDGFFTLDSAL 213 Query: 215 --TLEHLRELVEQAEQQDIPAAELLDPLLMP 243 T L + + A L+ L P Sbjct: 214 LRTQWDLTNIQDAIRAATPQVAAELEKSLSP 244 >UniRef50_C0NFL8 Pseudouridine synthase n=12 Tax=Eurotiomycetidae RepID=C0NFL8_AJECG Length = 450 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 95/190 (50%), Gaps = 35/190 (18%) Query: 9 RDINGVLLLDKPQGMSSNDALQ-------------------KVKRIYNAN---------- 39 R++ GV + KP G+SS + L+ +++R + Sbjct: 20 RNLEGVFAVHKPPGISSAEVLRNLQQHFTPSQFFRPWIETERIRRGAESKYQARRRRDKR 79 Query: 40 ---RAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIV 96 + GH G LDP+ATG+L +G TK L K Y + G TDT D+ G++V Sbjct: 80 LEVKIGHGGTLDPMATGVLIAGVGRGTKELNNFLACTKSYEAVVLFGAATDTYDSVGKVV 139 Query: 97 EERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIE--VPREARPI 153 P + +++ AL++FRG I Q PS++SAL+ QGKKLYEYAR+GIE V RP+ Sbjct: 140 SRAPYEHITRDKVEKALESFRGKILQRPSIFSALRVQGKKLYEYAREGIEPPVEILKRPV 199 Query: 154 TVYELLFIRH 163 V +L + Sbjct: 200 EVTKLEILDW 209 Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 ++L + S G Y+R++ DLG L A + L R + + +E LE+ R+L E Sbjct: 340 VKLSMTVSSGFYVRSLAHDLGLALDSNAIMSSLVRTRQADFTLEPEKVLEY-RDLEAGEE 398 Query: 228 QQDIPAAELLDPLL 241 LD + Sbjct: 399 VWGPKLQSFLDEWM 412 >UniRef50_A9F237 Probable tRNA pseudouridine 55 synthase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F237_SORC5 Length = 394 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 23/170 (13%) Query: 15 LLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDK 74 L++DKP+G +S+D + +++R R GH G LDP+A+G+L + +GEATK + YL DK Sbjct: 2 LVIDKPRGPTSHDVVARLRRALGVKRIGHAGTLDPMASGVLVVLVGEATKLAPYLTAQDK 61 Query: 75 RYRVIARLGQRTDTSDADGQIVEERPVTF-----------------------SAEQLAAA 111 RY LG TDT DADG+I +P+ +A ++AAA Sbjct: 62 RYTARVVLGVGTDTLDADGEITATQPLPPWLDAELGALAGAGGPPGGEALARAAPRIAAA 121 Query: 112 LDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI 161 +D R EQ P YSA+K G++ Y AR G V AR + V L Sbjct: 122 IDAERARREQSPPAYSAIKVAGQRSYALARAGQVVELSARAVEVRSLEVT 171 Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 18/132 (13%) Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 L+LE+ SKG Y+R++ DLG L AH+ LRR A + VE+ V+L+ Sbjct: 238 LDLELGVSKGYYVRSLARDLGAHLDVPAHLSALRRTASGSFTVEQAVSLD---------- 287 Query: 228 QQDIPAAELLDPLLMPM-DSPASDYPVVNLPLTSSVYFKNGNPVR---TSGAPLEGLVRV 283 AE L L P+ D+ A+ PV L + + G + S AP V Sbjct: 288 ----AGAEALRASLRPLADAAAASLPVARLTEHGARRARMGQALTESDFSMAPAHPGAAV 343 Query: 284 TEGENGKFIGMG 295 +G + +G Sbjct: 344 WLDPDGAVVALG 355 >UniRef50_O95900 Probable tRNA pseudouridine synthase 2 n=22 Tax=Tetrapoda RepID=TRUB2_HUMAN Length = 331 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 7/211 (3%) Query: 40 RAGHTGALDPLATGMLPICLGEATKFSQYLLDSD--KRYRVIARLGQRTDTSDADGQIVE 97 + G LD A+G+L + +G + + ++ K Y V LG+ TD DG++VE Sbjct: 90 KVGVGHRLDAQASGVLVLGVGHGCRLLTDMYNAHLTKDYTVRGLLGKATDDFREDGRLVE 149 Query: 98 ERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVY 156 + + E+L L +G ++ MYS L + ++ YE A +G+ P P+ + Sbjct: 150 KTTYDHVTREKLDRILAVIQGSHQKALVMYSNLDLKTQEAYEMAVRGLIRPMNKSPMLIT 209 Query: 157 ELLFIRHEGNELELEIHCSKGTY--IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV 214 + + E LE+ C T +R ++ ++G +L A +RR + ++ + Sbjct: 210 GIRCLYFAPPEFLLEVQCMHETQKELRKLVHEIGLELKTTAVCTQVRRTRDGFFTLDSAL 269 Query: 215 --TLEHLRELVEQAEQQDIPAAELLDPLLMP 243 T L + + A L+ L P Sbjct: 270 LRTQWDLTNIQDAIRAATPQVAAELEKSLSP 300 >UniRef50_B6W932 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W932_9FIRM Length = 147 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 62/140 (44%), Positives = 91/140 (65%), Gaps = 1/140 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+LL+DK G SS + + ++ + GH G LDPLATG+LP+ + +AT+ S +L+D Sbjct: 3 SGILLIDKNTGASSGKIVYQARKKLGIKKIGHAGTLDPLATGLLPLLINKATRVSDFLMD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDT-FRGDIEQIPSMYSALK 130 K Y +A GQ+TD+ D G+I+E+ TF + L A+D F G+I Q P MYSALK Sbjct: 63 EVKIYETLAFFGQKTDSQDITGEILEKSSKTFELDDLKKAIDENFVGEILQTPPMYSALK 122 Query: 131 YQGKKLYEYARQGIEVPREA 150 ++GKKLYE AR+G + R+ Sbjct: 123 HKGKKLYELAREGKSIERKK 142 >UniRef50_O59721 Probable tRNA pseudouridine synthase 4 n=1 Tax=Schizosaccharomyces pombe RepID=PUS4_SCHPO Length = 407 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 65/182 (35%), Positives = 93/182 (51%), Gaps = 31/182 (17%) Query: 13 GVLLLDKPQGMSSNDALQKVKRI-----------------------------YNANRAGH 43 G++ ++KP G +S L ++K+I + GH Sbjct: 51 GLIAINKPSGRTSAQCLNELKKIISNSELAQYFRPAPPHPNDRNRRRRKSNRLPDIKIGH 110 Query: 44 TGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF 103 G LDPLA+G+L + LG TK LL K YR A G TDT D+ G+I++ Sbjct: 111 GGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTYRATALFGCSTDTYDSAGKIIKIAVHIP 170 Query: 104 SAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP--REARPITVYELLFI 161 + E++ + LD FRGDI Q+P +YSAL QGK+LYEYAR+GI +P +AR + EL+ Sbjct: 171 TKEEILSGLDAFRGDISQLPPLYSALHIQGKRLYEYAREGIPLPESIKARSMHCEELILK 230 Query: 162 RH 163 Sbjct: 231 DF 232 Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%) Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 L++ S G Y+R++I DLG ++ AH++ L RL + ++ + E Sbjct: 331 AVLDMTVSSGFYVRSLIHDLGRQVNSEAHMVDLVRLKQGSFALDDENCFDFSEFSAPGWE 390 Query: 228 QQDIPAAE 235 ++ A + Sbjct: 391 EKLAAAFK 398 >UniRef50_C9SFT4 tRNA pseudouridine synthase B n=7 Tax=Sordariomycetes RepID=C9SFT4_VERA1 Length = 496 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 65/190 (34%), Positives = 91/190 (47%), Gaps = 37/190 (19%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYN--------------------------------- 37 + GV ++KP GMSS ++ ++ +N Sbjct: 7 LEGVFAINKPLGMSSAQVIRDCQQHFNPSTLFAPLVQQEISKRLNESGSQFKRRGINKKG 66 Query: 38 -ANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIV 96 + GH G LDPLATG+L + +G TK Q LD K Y + G TD+ D G+I+ Sbjct: 67 ARVKMGHGGTLDPLATGVLILGVGSGTKSLQGFLDCTKTYETVVVFGAGTDSYDRTGRIL 126 Query: 97 EERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREA--RPI 153 RP + E + +D+FRG EQIP +YSALK +GK LYEYAR+ +PRE R + Sbjct: 127 TRRPYDHITREMVEKEMDSFRGKFEQIPPLYSALKMEGKPLYEYAREDKPIPREIIGRDV 186 Query: 154 TVYELLFIRH 163 V EL + Sbjct: 187 EVKELELLEW 196 Score = 60.3 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 1/74 (1%) Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE-RMVTLEHLRELVEQA 226 + + + G Y+R+ DLG K+G A + L R + ++ + + L + Sbjct: 327 ARIRMTVTSGFYVRSFCHDLGTKVGSAAMMAELSRDRQGDFALKQNCLEYDDLAKGEAVW 386 Query: 227 EQQDIPAAELLDPL 240 Q Sbjct: 387 APQVRELLADWKEK 400 >UniRef50_A2XWN3 Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=A2XWN3_ORYSI Length = 288 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 50/240 (20%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 P R R + LD+P + +KR+ N+ GH+G LDP TG L +C+ AT Sbjct: 85 PSRPPR-----VRLDRPW------VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRAT 133 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIP 123 + + + K Y +AR A A + G + Q Sbjct: 134 RLVKSQQGAGKEYVCVARFHAAVP-------------------DTARAFEALTGAMFQRL 174 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIR 181 + SA+K R+ R T+YE + H+ I C GTY+R Sbjct: 175 PLISAVK-----------------RQLRVRTIYESKLLEHDAERHLAVFWISCEAGTYVR 217 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 T+ LG LG GAH+ L R+ + + MVT+ + + ++ + A L+ Sbjct: 218 TLCVHLGLLLGVGAHMQELHRVRSGIHGEQDNMVTMHDVMDARQEFTSEIPDALNKLNTY 277 >UniRef50_Q6BPN6 DEHA2E12144p n=6 Tax=Saccharomycetales RepID=Q6BPN6_DEBHA Length = 412 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 73/291 (25%), Positives = 125/291 (42%), Gaps = 58/291 (19%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYN--------------------------------- 37 +NGV ++KP G++S+ + ++ ++ Sbjct: 1 MNGVFAIEKPSGITSSKFIGDIQALFTQSEIFKNDLNEAKTKAAQALGTDKKWSKERINK 60 Query: 38 -----ANRAGHTGALDPLATGMLPICLGEATKFSQYLL-DSDKRYRVIARLGQRTDTSDA 91 + GH G LDP+A+G+L + +G TK QY L + +K Y A LG T T DA Sbjct: 61 RVKSLKVKIGHGGTLDPMASGVLVVGVGLGTKKLQYYLSECNKTYETKALLGISTTTGDA 120 Query: 92 DGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREA 150 +G+I+ + V + E + F GD++Q P ++SALK GK LY+YAR+GI +P Sbjct: 121 EGEIITKNQVSHITQEMIKETAPKFIGDLKQTPPIFSALKMNGKPLYDYAREGIPLPMPI 180 Query: 151 --RPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKY 208 R + V+++ + + E T+ +L E+ H +S Sbjct: 181 KVRQVKVFDVKVHDEDSLRTDHEFQ--------TLKSELDEQGNPKEH-------ELSNN 225 Query: 209 PVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLT 259 P L + + +AE + +P E+ P + DS P+++L Sbjct: 226 PTLNDSPLYFSEQYLSKAETEGLP-KEVGKPRSLADDSLPEKLPLIHLTAD 275 Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 3/82 (3%) Query: 159 LFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV-ERMVTLE 217 + + + L S GTYIR+++ D G L A+++ L R+ S++ + + + + Sbjct: 261 DSLPEKLPLIHLTADVSSGTYIRSLVSDYGRALESSAYMVELIRVRQSEWQLGKNVFKIS 320 Query: 218 HLRELVEQAEQQDIPAAELLDP 239 E ++LD Sbjct: 321 DFENRDE--RIWGPVLKKVLDS 340 >UniRef50_Q6C7U6 YALI0D25234p n=1 Tax=Yarrowia lipolytica RepID=Q6C7U6_YARLI Length = 448 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 58/166 (34%), Positives = 89/166 (53%), Gaps = 16/166 (9%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIY-------------NANRAGHTGALDPLATGMLPIC 58 NGV ++DKP+ + S ++K+K + N + GH GALDP ATG+L I Sbjct: 5 NGVFVVDKPKNIGSTQVVEKLKWTFINAAGGKQKGGSRNPLKIGHGGALDPFATGVLAIG 64 Query: 59 LGEATKFSQYLLDS-DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFR 116 +G TK + S DK Y +G T T D +G +V+ +AE++ L FR Sbjct: 65 VGAGTKQLGDMTHSTDKEYIATVFMGHETTTCDREGHVVKSDDSSHITAEKIEETLAKFR 124 Query: 117 GDIEQIPSMYSALKYQGKKLYEYARQGIEVP-REARPITVYELLFI 161 GDI+Q P +YS++ G +L++YAR G++VP +R V +L + Sbjct: 125 GDIKQFPPVYSSVSVDGVRLWDYARNGLKVPYIPSRECHVSKLELV 170 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ-A 226 ++ S GTYIR + +D+ E+LG H++ LRRL + V+ L+ + E+ Sbjct: 299 FQIRAAVSSGTYIRQLANDICEELGVSGHLVELRRLTQGDFGVDNCFPLDKILNQPEEIW 358 Query: 227 EQQDIPAAELLDPLLM 242 E + A + + Sbjct: 359 EHEITKALKEGPKYVY 374 >UniRef50_B9FC36 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9FC36_ORYSJ Length = 347 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 86/216 (39%), Gaps = 41/216 (18%) Query: 28 ALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTD 87 + +KR+ N+ GH+G LDP TG L +C+ AT+ + + K Y +AR Sbjct: 159 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHA--- 215 Query: 88 TSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP 147 A AL+ G + Q + SA+K Sbjct: 216 ------------------ADTARALEALTGAMFQRLPLISAVK----------------- 240 Query: 148 REARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAV 205 R+ R T+YE + H+ I C GTY+RT+ LG LG GAH+ L R+ Sbjct: 241 RQLRVRTIYESKLLEHDAERHLAVFWISCEAGTYVRTLCVHLGLLLGVGAHMQELHRVRS 300 Query: 206 SKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 + + MVT+ + + ++ + A L+ Sbjct: 301 GIHGEQDNMVTMHDVMDARQEFTSEIPDALNKLNTY 336 >UniRef50_Q5KKZ0 Pseudouridylate synthase 4, putative n=2 Tax=Filobasidiella neoformans RepID=Q5KKZ0_CRYNE Length = 443 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 85/200 (42%), Gaps = 32/200 (16%) Query: 1 MSRPRRRGR-DINGVLLLDKPQGMSSNDALQKV-----------------------KRIY 36 M + +NG+ + KP G SS + ++ KR Sbjct: 1 MPKALPTPTLPLNGLFPIAKPSGKSSMRVIDRITPLLLDSKLFDDPVKRAQPQMKGKRKK 60 Query: 37 NAN----RAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDAD 92 N + G G LDPLA G+L + + TK L+ K Y I +G T + DAD Sbjct: 61 NLTQFGLKIGQGGTLDPLADGVLVLGVNRGTKHLNQFLECSKEYESIGLIGATTTSMDAD 120 Query: 93 GQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPR--E 149 ++ P + E + LD FRG+I Q+P ++SALK GK LYEYAR+ +PR Sbjct: 121 DPVLSTAPWEHITREDVEKVLDRFRGEIMQVPPIFSALKMDGKPLYEYARESKPLPRPIP 180 Query: 150 ARPITVYELLFIRHEGNELE 169 AR V + I + Sbjct: 181 ARKCQV-SIELIDFTPASVT 199 Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 164 EGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV 210 + + S GTY+R+I++D+G LGCGAHV+ L R ++ + Sbjct: 279 RPPTFTVRMTVSSGTYVRSIVNDIGLALGCGAHVVKLTRTRQGEFSL 325 >UniRef50_B2W7I6 tRNA pseudouridine synthase B n=2 Tax=Pleosporineae RepID=B2W7I6_PYRTR Length = 459 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 30/173 (17%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDAL----------------------------QKVKRIY 36 + + + G+ ++KPQ SS L K K I Sbjct: 6 KSNPKVLEGIFAINKPQWASSAGVLRDLQEHFSRSSLFAPWLESQKRSLILSQAKQKHIN 65 Query: 37 NAN-RAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI 95 N + GH G LDP+ATG+L + +G+ TK Q L+ K Y + G TD+ DA G++ Sbjct: 66 NLKVKLGHGGTLDPMATGVLIVGMGKGTKCLQRFLECTKTYECVVLFGAATDSYDAVGKV 125 Query: 96 VEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVP 147 V + P + E + L FRG I Q PS++SALK GKK+YEYAR G ++P Sbjct: 126 VSKAPYEHVTKELVEERLAQFRGKILQKPSVFSALKVDGKKMYEYARAGGDIP 178 Score = 58.0 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 1/70 (1%) Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE-RMVTLEHLRELVEQA 226 L + + G Y+R++ DLG + L R Y + ++ L + + Sbjct: 328 ARLRMTVTSGFYVRSLCHDLGLACSSLGLMSSLIRSRQGAYTLNKNVLEYSDLEDPAKWE 387 Query: 227 EQQDIPAAEL 236 + Sbjct: 388 PVLQKQLEDF 397 >UniRef50_A4YCT2 PUA domain containing protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YCT2_METS5 Length = 233 Score = 150 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 56/261 (21%), Positives = 95/261 (36%), Gaps = 59/261 (22%) Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 + S K Y + + F E+L A F G I Q P + S+ Sbjct: 4 VTKSGKEYVCLMEVH-----------------CDFQEERLRAIAKEFVGTIYQKPPVRSS 46 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K R R +Y L + EG + ++I GTY+R I D+G Sbjct: 47 VK-----------------RRVRKRKIYSLEVLEMEGRRVLMKISSEPGTYMRKICHDMG 89 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCGAH+ LRR + + +VTL+ + E + + + L +L+PM+ Sbjct: 90 ILLGCGAHMRELRRTRSGIFTEDTVVTLQQVSEALYLYR--NCGEEDELRRILIPMEMAF 147 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR------ 302 P + + + G+P+ G+V + G + + EG Sbjct: 148 CGIPKIIVDDETVNSLAYGSPLMAP-----GIVAFQGFKKGDTVALITWKGEGIALGKAL 202 Query: 303 ------------VAPRRLVVE 311 V P R++++ Sbjct: 203 VDSVSMGKRGEVVKPERVLMD 223 >UniRef50_D1Y7J6 tRNA pseudouridine synthase B (Fragment) n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7J6_9BACT Length = 167 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 3/156 (1%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYN--ANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 NG+L+LDK G S + V + + GH G LD A+G L + G AT+ S+ + Sbjct: 3 NGILVLDKIYGAPSRGCVTAVSKALGGRKQKVGHAGTLDTSASGTLVLLAGSATRLSEAV 62 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 ++ K Y G T T DA G+ + E P + L AL F+G Q P SA Sbjct: 63 MNLPKSYLARVTFGWETSTDDATGEPLSEAVPAAYDEAALRGALPAFQGVRLQTPPRVSA 122 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE 164 +K G + ++ AR G E RP+ V + ++ + Sbjct: 123 VKVDGARAHKLARSGREPDIRPRPVNVVSIRYLGRD 158 >UniRef50_P48567 tRNA pseudouridine synthase 4 n=13 Tax=Saccharomycetaceae RepID=PUS4_YEAST Length = 403 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 41/191 (21%) Query: 11 INGVLLLDKPQGMSSNDALQKVK------------------------------------- 33 +NG+ ++KP G++SN + K++ Sbjct: 1 MNGIFAIEKPSGITSNQFMLKLQHALTKSQVFSKEIQRATAERKQQYEKQTGKKASKRKL 60 Query: 34 RIYNANRAGHTGALDPLATGMLPICLGEATK-FSQYLLDSDKRYRVIARLGQRTDTSDAD 92 R + + GH G LDPLA+G+L I +G TK + YL + K Y A G T + D + Sbjct: 61 RKVSKVKMGHGGTLDPLASGVLVIGIGAGTKKLANYLSGTVKVYESEALFGVSTTSGDVE 120 Query: 93 GQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPR--E 149 G+I+ + V + + L + F G ++Q P +Y+ALK GK L+EYAR+G +PR E Sbjct: 121 GEILSQNSVKHLNFDDLKTVEEKFVGQLKQTPPIYAALKMDGKPLHEYAREGKPLPRAIE 180 Query: 150 ARPITVYELLF 160 R +T+Y+L Sbjct: 181 PRQVTIYDLKV 191 Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 44/79 (55%), Gaps = 4/79 (5%) Query: 163 HEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLREL 222 + +L + + S GTYIR+++ D+G+ + +++ L RL + +E+ ++ +L Sbjct: 268 YRAPKLHFKANVSSGTYIRSLVSDIGKSMRSSCYMVKLIRLQQQDWSLEK----NNVFQL 323 Query: 223 VEQAEQQDIPAAELLDPLL 241 + E+ + +++L+ +L Sbjct: 324 TDFTERDEKVWSKVLEKVL 342 >UniRef50_B5DZE3 GA24084 n=5 Tax=Diptera RepID=B5DZE3_DROPS Length = 315 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 88/265 (33%), Gaps = 59/265 (22%) Query: 9 RDINGVLLLDKPQGM--------------------------------------------- 23 R +NGVL + KP GM Sbjct: 14 RHLNGVLNVYKPAGMKVGHVRSAVLSNICKGLNELKQRDPRRLPQNRPLLGTGTAADSVL 73 Query: 24 ----SSNDALQKV-----KRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD- 73 +S D V + + R +L +G+L + + + S + + Sbjct: 74 HNIATSTDLSDDVLSTGPRYMPEDIRCAAVASLGQHTSGVLLFGINKGLRQSSRIQKNRP 133 Query: 74 -KRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + Y + R+G T+ D I SAE+++ + + ++ + Sbjct: 134 VRVYHITGRMGTATENHLPDTHITARSNHKHVSAERISGLAASMQASHQRKMYELCGVDL 193 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT--YIRTIIDDLGE 189 Q + YE A +G+ P + +Y + I E LE+H T Y+ ++ D+ Sbjct: 194 QTQAAYELACKGLIRPADNSLPVIYGIKLIHFERPHFTLELHSINETQEYLAALVHDMAL 253 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMV 214 +L AH LR + S + V + Sbjct: 254 ELRTVAHCSQLRCIRHSHFDVTDSL 278 >UniRef50_Q7T013 Novel protein (Zgc:91836) n=8 Tax=Clupeocephala RepID=Q7T013_DANRE Length = 343 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 12/190 (6%) Query: 36 YNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD--KRYRVIARLGQRTDTSDADG 93 ++ G LD ++G+L + +G+ + L S + Y + G+ TD Sbjct: 90 FHKVHVGVGHRLDAFSSGVLVLGVGKGNSVLENLCKSHVTRDYTIEGEFGKATDNF---- 145 Query: 94 QIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPI 153 + ++L L +G ++ YS ++ Q ++ YE A +G+ P P Sbjct: 146 ----SHTDHITHDKLERVLAMLQGSNQKALITYSQVELQTQEAYELAARGLLYPDGKSPP 201 Query: 154 TVYELLFIRHEGNELELEIHCSKGT--YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE 211 + L I+ LE+ C T Y+R +I ++G +L A +RR + VE Sbjct: 202 ILTGLRCIKFNPPHFTLEVRCVNETQKYLRKLIHEVGLELRASAVCTKVRRTRDGPFKVE 261 Query: 212 RMVTLEHLRE 221 +T +H Sbjct: 262 NALTRQHWTA 271 >UniRef50_D1I9G8 Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1I9G8_VITVI Length = 476 Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 60/317 (18%), Positives = 102/317 (32%), Gaps = 117/317 (36%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L LDKP SS++ + +KRI + GH+G LDP TG L + Sbjct: 93 GILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVL-------------- 138 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 ++A AL+T G + Q P + SA+K Sbjct: 139 ------------------------------PDVAKVARALETLTGAVFQRPPLISAVK-- 166 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 R+ R T+YE R Sbjct: 167 ---------------RQLRIRTIYE-----------------------R----------- 177 Query: 193 CGAHVIYLRRLAVSKYPV-ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 H+ LRR+ + MVT+ + + Q + L ++MP++ + Y Sbjct: 178 ---HMQELRRVRSGILGEKDNMVTMHDVMDA--QWVYDNYRDESYLRRVIMPLEVVLTSY 232 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEID----- 298 + + ++ G + G E +V +T +G+ E+ Sbjct: 233 KRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGEEVVLMTTKGEAIALGIAEMTTAVMA 292 Query: 299 --DEGRV-APRRLVVEY 312 D G V +R+V++ Sbjct: 293 TCDHGVVARIKRVVMDR 309 >UniRef50_B7QF44 Putative uncharacterized protein (Fragment) n=1 Tax=Ixodes scapularis RepID=B7QF44_IXOSC Length = 325 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 90/239 (37%), Gaps = 11/239 (4%) Query: 21 QGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD--KRYRV 78 ++ + + + + + +G++ + + + K L S+ + Y + Sbjct: 75 PNLADHPLVVGQRYQAKDIKLTWVHDIGRYPSGVVVMGVNASHKKLLKLRHSNQLRTYEL 134 Query: 79 IARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLY 137 G+ +DT D +IVE+ + ++ L + + + YS + ++ Y Sbjct: 135 RGEFGKASDTLTPDSKIVEQATYGHITIAKMERLLSSIQATHQVQAFKYSGVHMDTQEAY 194 Query: 138 EYARQGIEVPREARPITVYELLFIRHEGNELELEIHC--SKGTYIRTIIDDLGEKLGCGA 195 E A G P + P +Y + + LE+ C +Y+ ++ D+G +L A Sbjct: 195 ELAAAGTVRPADKSPTLIYNIRCTEFDLPYFTLEVSCLNEDASYLLQLVHDIGLRLRSCA 254 Query: 196 HVIYLRRLAVSKYPVERM-----VTLEHLRELVEQAEQQ-DIPAAELLDPLLMPMDSPA 248 +R++ ++ ++ +LEH+ + E P L+ +D Sbjct: 255 LCHRVRQVRYGQFGLDHALLRKHWSLEHILNNINHCRHLVTWEQLEPSSPHLVDVDVSF 313 >UniRef50_UPI00006A5396 PREDICTED: similar to TruB pseudouridine (psi) synthase homolog 2 isoform 1 n=2 Tax=Ciona intestinalis RepID=UPI00006A5396 Length = 326 Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 73/202 (36%), Gaps = 6/202 (2%) Query: 21 QGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQYL--LDSDKRYR 77 S + + + LD A G+ I + + K + L + YR Sbjct: 78 PDWSDHILVTGPRYRNEDFHISFGNLLDADACGVQVIGVKKKGEKQLKRLKYMKLSSTYR 137 Query: 78 VIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKL 136 + G + + +I+E S++++ L +G S L+ K Sbjct: 138 AFGQFGLTSMSHSPKTRILERSTWDHLSSDKINRVLMAMQGAHRNAMLRDSGLELSSHKA 197 Query: 137 YEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT--YIRTIIDDLGEKLGCG 194 YE A +G+ P E + +L LE+ C T +IR ++ ++ +L Sbjct: 198 YELASKGLLRPMEGNEPVIVDLKLSSLNLPHFSLEVTCLNDTCGFIRKLVHEVAAELRSS 257 Query: 195 AHVIYLRRLAVSKYPVERMVTL 216 A L+R VS + + TL Sbjct: 258 AICTKLQRQRVSVFSHDNKHTL 279 >UniRef50_C3YU77 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YU77_BRAFL Length = 261 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 5/171 (2%) Query: 55 LPICLGEATKFSQYLLDS--DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAA 111 L + + + K + + D+ ++Y V + G TD DA G++VE S E+LA Sbjct: 48 LVLGIRDGIKKVRAMFDAHYSRQYIVEGKFGLATDNHDASGKVVERTTYDHISGEKLARV 107 Query: 112 LDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELE 171 + + + + + + Y+ + Q ++ YE A QG+ PR P V + + + LE Sbjct: 108 VSFLQRNHQNLTTEYAGVDIQSQEAYELASQGLLRPRMTSPPLVLAMRCLEYRPPNFTLE 167 Query: 172 IHCSKGT--YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 + C T ++R ++ D+G +L A +RR + + + ++H + Sbjct: 168 VQCVHETPQWLRKLVHDIGLELRSTAVSTKVRRTRDGYFTSDDALLIKHCK 218 >UniRef50_D2VC43 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VC43_NAEGR Length = 233 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 40/224 (17%) Query: 37 NANRAGHTGALDPLATGMLPICL-GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI 95 R GH G LDP A G+L I + G+ TK +YL +K Y + + G T + DAD Sbjct: 11 KDLRVGHGGCLDPSAHGVLMIGVNGQGTKALKYLDRDEKVYDFVIQCGSSTPSYDADTVK 70 Query: 96 VEERPVTF---------SAEQLAAALDTFRGD----IEQIPSMYSALKYQGKKLYE---- 138 + + EQ+ ++ + + I Q ++SA+K GK+L+ Sbjct: 71 FATYCPHYRYFFDKNCQTIEQVNELVNQYLKERNNVIVQKTPVFSAVKIGGKRLFSHGYN 130 Query: 139 -----------------YARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTY 179 + + +R I V + E +L CS GTY Sbjct: 131 NLRKMEQQDEEERKYRGLYCEEETLNLPSRSIRVDRIECTHINKELGQLSFSCTCSTGTY 190 Query: 180 IRTIIDDLGEKLG-CGAHVIYLRRLAVSKYPVERMVTLEHLREL 222 +R + ++ L CGA+V L R + K M+ L+ + L Sbjct: 191 VRILGYEIAHLLEVCGAYVTDLYRTRIGKNT--NMLKLDEIGNL 232 >UniRef50_B9QMG1 tRNA pseudouridine synthase B, putative n=3 Tax=Toxoplasma gondii RepID=B9QMG1_TOXGO Length = 599 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 44/203 (21%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANR-------------------------------- 40 G++ + KP+G++S D ++V + + R Sbjct: 252 GLVGVVKPKGLTSMDVCRRVSELLKSYRDSRDRTLVSSGVDETEDLLPDVLHSKGEVGEM 311 Query: 41 ----------AGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSD 90 GH G LDP ATG+L + +GE TK ++ L KRY+ + RLG TDT D Sbjct: 312 QTRTGRRKTGVGHGGTLDPAATGVLILGIGEGTKRLRHFLTGWKRYKAVVRLGVTTDTLD 371 Query: 91 ADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPRE 149 ++G++V E + L L +F G Q P ++SA + +G ++Y+ AR E ++ Sbjct: 372 SEGRVVAEENWRHVTLATLKRVLPSFLGKQLQQPPLFSAKRVKGVRMYDIARYIQE-QQD 430 Query: 150 ARPITVYELLFIRHEGNELELEI 172 R + L H GN + + Sbjct: 431 RRSQKSFPLGDAVHSGNNHDAFV 453 Score = 88.8 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 20/139 (14%) Query: 112 LDTFRGDIEQIPSMY----SALKYQGKKLYEYARQGIEVPRE-ARPITVYELLFIR---H 163 + + Q P SAL + K V I + EL + Sbjct: 468 MQQQLPERLQKPPSVGGGNSALHHAVTK---------HVSLPNPCEIEISELELVDEEEF 518 Query: 164 EGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELV 223 E + + CSKGTYIR + D+ + G H+ L R + + +E V E L Sbjct: 519 EMPHFAISVTCSKGTYIRQLAADIAARCGTVGHLTELTRTFQAPFRLEDCVNFEDLTA-- 576 Query: 224 EQAEQQDIPAAELLDPLLM 242 + + ++D +L Sbjct: 577 -DGLLRRLIPVHVIDRILR 594 >UniRef50_A4NYM2 tRNA pseudouridine synthase B n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NYM2_HAEIN Length = 151 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 85/156 (54%), Gaps = 9/156 (5%) Query: 157 ELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTL 216 FI + L LE+HCSKGTYIRT++DDLGE LGCGAHV LRR AV+ YPV M+ + Sbjct: 2 NFNFIDYNAPYLTLEVHCSKGTYIRTLVDDLGEVLGCGAHVTMLRRTAVADYPVAEMMPI 61 Query: 217 EHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP 276 L+ L E LD LL+P D+ S P ++L + S G V+ + Sbjct: 62 NELQLLAES------FPLSELDRLLLPTDTAVSKLPALHLDVEQSKAIGFGQRVKFANEQ 115 Query: 277 L-EGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVE 311 G VR+ EN F+G+ I D + P+RL+ + Sbjct: 116 QLGGQVRLFSAEN-LFLGVALI-DGNIIRPQRLITQ 149 >UniRef50_B6W931 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W931_9FIRM Length = 156 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 14/166 (8%) Query: 149 EARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKY 208 E + I +Y+ + L I CSKGTYIRT+++DLGE L A V LRR+ V + Sbjct: 3 EKKKIKIYDFEILDFNFPYARLRISCSKGTYIRTLVNDLGEILQTFATVKELRRIKVGDF 62 Query: 209 PVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGN 268 V+ + +E ++ A+ + L+P+D Y + L + NG Sbjct: 63 DVKDAIKMEDFEKMQ----------ADQIIKKLIPIDKALCQYEKIVLDKSYYKQATNGM 112 Query: 269 PVRTS-GAPLEGLVRVTEGENGKFIGMGEIDDEGR-VAPRRLVVEY 312 ++ G ++ +RV G FIG+GE +E + + +++ E Sbjct: 113 TMKVDYGKNVDNYLRVYVG--DLFIGLGEYKNENKTLKIKKVFYER 156 >UniRef50_UPI0000D56069 PREDICTED: similar to AGAP002077-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D56069 Length = 304 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 10/218 (4%) Query: 33 KRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS--DKRYRVIARLGQRTDTSD 90 + I++ + + L +G+L + LG+ TK ++ + ++ + YR+ +LG+ TD + Sbjct: 82 RYIHDDLKCSWSNFLGFNTSGVLLLGLGKGTKVAKLIRENRPTRCYRLSGKLGEATDNAF 141 Query: 91 ADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPRE 149 DG++VE E + L T + ++ + Q ++ Y+ A QG P Sbjct: 142 KDGKVVERTTWRHVKLENMNRFLATLQASHQKEMFKSCGIDLQSEEAYKLACQGPIRPAN 201 Query: 150 ARPITVYELLFIRHEGNELELEIHC--SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSK 207 ++ +Y + ++ E E +EI C TY+R++I ++G KL AH ++ + S Sbjct: 202 SKLPVIYGIKCVKFEPPEFVIEIQCINEYETYLRSLIHEIGMKLHSSAHCTAIQCIRHSY 261 Query: 208 YPVERM-----VTLEHLRELVEQAEQQDIPAAELLDPL 240 + VE TL+ + +EQ Q ++ Sbjct: 262 FTVENALLRKHWTLQDIITNMEQCIQIMDEHENIIRQK 299 >UniRef50_UPI0000519F9E PREDICTED: similar to CG7849-PB, isoform B n=2 Tax=Apocrita RepID=UPI0000519F9E Length = 319 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 86/232 (37%), Gaps = 13/232 (5%) Query: 33 KRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD--SDKRYRVIARLGQRTDTSD 90 + N + T + +G+L + + + + + + Y++ LGQ TD Sbjct: 88 RYQPNDFKLAATKIMHKDISGVLVCGINKGNQLIHKIKENMCIRFYKIKGLLGQATDNYF 147 Query: 91 ADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPRE 149 G+IVE+ + + + ++ + Q + YE A QG P Sbjct: 148 HTGKIVEKSKYTHIKRGHIDKLCSSMQSSHQKKMFELCGVDIQSQAAYELAVQGPIRPAN 207 Query: 150 ARPITVYELLFIRHEGNELELEIHCSKG--TYIRTIIDDLGEKLGCGAHVIYLRRLAVSK 207 + +Y + E LE+ C+ Y++TII +LG +L A + + Sbjct: 208 SNIPMIYTIKCTDFSPPEFTLEVVCTNEYDLYLKTIIHELGMQLRSNATCTQIICIQDGL 267 Query: 208 YPVERM-----VTLEHLRELVEQAEQQDIPAAELL---DPLLMPMDSPASDY 251 + +++ L+ + ++ ++ +L + L P++ Y Sbjct: 268 FNIQQALLSKYWNLKEIMYNMQMCKKIIDKNDHILCQENAALKPINHSIEAY 319 >UniRef50_D2EFU3 PUA domain containing protein n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EFU3_9EURY Length = 223 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 25/199 (12%) Query: 103 FSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR 162 + L D F G I Q+P + S +K R+ R +Y + Sbjct: 7 VDEQLLRDTFDKFIGKIMQLPPVRSHVK-----------------RQYRQREIYYSDILE 49 Query: 163 HEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV-ERMVTLEHLRE 221 G ++ ++ GTYIR +I D+GE+L GAH++ LRR VS + +VTL+ L + Sbjct: 50 INGRDVLFKVGVESGTYIRKLIHDMGEELKVGAHMVELRRTKVSTLSEKDNLVTLQDLDD 109 Query: 222 LVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV 281 V E+++ +LL+ L ++S P V + + G+P+ G+V Sbjct: 110 AVYFYEKEN--DDKLLNKCLDSIESAVDFIPKVFISDGAVDPVCRGSPLAVP-----GIV 162 Query: 282 RVTEGENGKFIGMGEIDDE 300 + + + +G+ + E Sbjct: 163 KFNDFGKEEVVGIMTLKGE 181 >UniRef50_A9BKY1 Cbf5 n=1 Tax=Cryptophyta RepID=A9BKY1_9CRYP Length = 382 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 53/300 (17%), Positives = 106/300 (35%), Gaps = 49/300 (16%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++ NG++ DKP G +S++ L +++I G +G + + +G++ F Sbjct: 39 EKKNKNGLINFDKPFGCNSHEILHWIEKILKLKTIKCFGKAPSNISGCMILGIGKS--FL 96 Query: 67 QYLLDSDKR-YRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAA--ALDTFRGDIEQIP 123 L S K Y ++ E A F ++ + Sbjct: 97 NKLEFSSKSNYILVYTF------------------PNLPYENFRKINAWKKFNFNLFKNY 138 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREAR-PITVYELLFIRHEGNELELEIHCSKGTYIRT 182 ++S +K Q L Q + + R I V+E+ ++ I ++ Sbjct: 139 FVFSKIKQQL--LLNRIFQASHLEFDIRKKIGVFEI--------TVQFPIST------QS 182 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV-TLEHLRELVEQAEQQDIPAAELLDPLL 241 +I +LG ++ +RR+ + E + T L + Q ++ ++ Sbjct: 183 LIINLGFLFRKKIKLLEIRRIRIGSLTEEESLATFHDLLDA--QWLKKHFKKNFFFRKII 240 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA------PLEGLVRVTEGENGKFIGMG 295 +P+D S+Y V + +S G + +SG G V G I +G Sbjct: 241 LPLDVLFSEYRRVLVKDSSINSICFGAGLTSSGILKIEPNIEIGEKIVLLNFQGDPIAIG 300 >UniRef50_Q29QN4 CG7849, isoform B n=10 Tax=Drosophila RepID=Q29QN4_DROME Length = 317 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 85/228 (37%), Gaps = 10/228 (4%) Query: 22 GMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD--KRYRVI 79 +S + + + +L +G+L + S + + + Y +I Sbjct: 81 DLSDHLLSTGPRYLPRDLICTTVSSLGDHTSGVLLFGINRGAGQSSSIRKNRPVRVYHLI 140 Query: 80 ARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYE 138 LG T+ + D +++ SA+++++ + + ++ + Q ++ YE Sbjct: 141 GHLGIATENNLPDSRVIMRSNHRHVSADRISSLAASMQASHQRKMFELCGVDLQTQEAYE 200 Query: 139 YARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT--YIRTIIDDLGEKLGCGAH 196 A +G+ P + VY + I + LE+H T Y+ T++ D+ L AH Sbjct: 201 LACRGLLRPADDSQPVVYGIKLIHFDRPHFTLELHAINETQEYLATLVHDMALDLRTVAH 260 Query: 197 VIYLRRLAVSKYPVER-----MVTLEHLRELVEQAEQQDIPAAELLDP 239 LR + + + V L + + + Q +LL Sbjct: 261 CSQLRCVRHAHFDVTDSLLRHAWHLPGIIKNLRQQRDILRAHPQLLRQ 308 >UniRef50_UPI000179347F PREDICTED: similar to CG7849 CG7849-PB n=1 Tax=Acyrthosiphon pisum RepID=UPI000179347F Length = 316 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 102/272 (37%), Gaps = 52/272 (19%) Query: 1 MSRPRRRGRDINGVLLLDKPQGM------------------------------------- 23 +S R R +NG++ L KP G+ Sbjct: 4 LSTSERAFRLLNGIVCLYKPAGVHLSGCRHSLLLKLTQELNLCGVRSPENRVVISGDTTK 63 Query: 24 -------SS---NDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 SS N + + + T L +G+ I L + TK ++ L ++ Sbjct: 64 ELNVKVESSYADNVLVVGPRYQTQDIKCIWTTHLGKRVSGVCVIGLNKGTKMARILQNNY 123 Query: 74 --KRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 + Y + +LG T DGQ+VE+ E + + T + ++ + + Sbjct: 124 PLRTYHLHGQLGIMTKNMYIDGQVVEKGRFDFVKRENVDKLMSTIQASNQKKMFELANVD 183 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHC--SKGTYIRTIIDDLG 188 Q + Y+ A +G+ P + +Y + I + +E++ +Y+ +++ ++G Sbjct: 184 TQTQTAYDLATKGLIRPASTKSPLIYGIKCISLDLPNFIIEVNIINEYESYLLSLVHEIG 243 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 KL C A +R + S + +++ + ++H Sbjct: 244 LKLRCSATCTAIRCIRYSSFTIQQALLMKHWN 275 >UniRef50_UPI000058490A PREDICTED: similar to TruB pseudouridine (psi) synthase homolog 2 n=2 Tax=Strongylocentrotus purpuratus RepID=UPI000058490A Length = 352 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 44/251 (17%), Positives = 89/251 (35%), Gaps = 42/251 (16%) Query: 47 LDPLATGMLPICLGEATKFSQYLLDS--DKRYRVIARLGQRTDTSDADGQIVEERPVTFS 104 LD + G++ + + + K + ++Y + R G TDT D+ G++ ++ + Sbjct: 105 LDTKSCGVMVLAVRDGKKLVSQYQTARLPRQYTIRGRFGVATDTHDSQGKVWQKTTYGET 164 Query: 105 AEQLAAALDTF-----RGDIEQ---------IPSMY----------SALKYQGKKLYEYA 140 + + F I Q ++ S + Q ++ YE A Sbjct: 165 LKDFKLGIGPFEQIAVTKSISQAILQGLLAFKVPLFDCFQRELIRQSGVDIQSQEAYELA 224 Query: 141 RQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT--YIRTIIDDLGEKLGCGAHVI 198 +G+ P + ++ E E ELE+ T Y+R +I D+G++L A Sbjct: 225 VRGLLHPVGRTNPLLTDITCTMFEPPEFELELTSYADTAQYLRKVIHDIGQELKSSAIAT 284 Query: 199 YLRRLAVSKYPVERM-----VTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPV 253 +RR + +E L + +E+ P+ L+P+ Sbjct: 285 QVRRTHDGPFNIEHALLKKHWKLNDIAAAIEECRPLVRPSE------LVPLSQSRE---A 335 Query: 254 VNLPLTSSVYF 264 V + + Sbjct: 336 VRVMEEVDQRW 346 >UniRef50_B4LIK4 GJ21442 n=1 Tax=Drosophila virilis RepID=B4LIK4_DROVI Length = 318 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 80/203 (39%), Gaps = 5/203 (2%) Query: 17 LDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD--K 74 + K +S + + + + R +L +G+L + L K S + + + Sbjct: 76 IAKDTDLSDHILAAGPRYMPDDIRCAAVASLGRHTSGVLLLGLNNGLKQSSLIQRNRPVR 135 Query: 75 RYRVIARLGQRTDTSDADGQI-VEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 Y V AR+G T+ D + V +AE+++ + + ++ + Q Sbjct: 136 VYHVTARMGTATENHLPDSHVTVRANNRHVTAERISGLASSMQASHQRKMYELCGVDLQT 195 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHC--SKGTYIRTIIDDLGEKL 191 + YE A +G+ P + VY + I E LE+H Y+ ++ D+ +L Sbjct: 196 QAAYELACKGLLRPADNSQPVVYGIKLIHFERPHFTLELHTINESEQYMAALVHDMAIEL 255 Query: 192 GCGAHVIYLRRLAVSKYPVERMV 214 AH LR + + + V + Sbjct: 256 RTVAHCSQLRCIRHAHFDVTDSL 278 >UniRef50_UPI0001699077 tRNA pseudouridine synthase B n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699077 Length = 148 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 27/163 (16%) Query: 108 LAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE 167 + L FRG+ +Q+P MYSA+ ++G++LY AR+GIEV RE R I ++ L + E Sbjct: 1 IRDTLADFRGEQQQLPPMYSAIIHKGERLYNLARKGIEVEREPRTIHIHALELLSCERA- 59 Query: 168 LELEIHCSKGTYIRTIIDD--LGEKLGCGAHVIYLRRLA----------VSKYPVERMVT 215 + R + D G + G G LRRL V Y MVT Sbjct: 60 ---RVRARCALLQRHLCADPRRGYRQGIG-----LRRLCQAGPCGAAPGVGPYDGAEMVT 111 Query: 216 LEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPL 258 L L+E ++ + +D +L+P++S ++P V L Sbjct: 112 LAELKEAWQERR------FDEMDQMLLPLESALENWPEVVLSP 148 >UniRef50_Q4UE86 RNA modification (Pseudouridylation) protein TruB family member, putative n=1 Tax=Theileria annulata RepID=Q4UE86_THEAN Length = 171 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 20/137 (14%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNAN---------RAGHTGALDPLATGMLPICLGEA 62 NG+L + KP G+SS K+K I N R GH G LD G+L I +GE Sbjct: 30 NGLLNVYKPYGVSSTYVCNKIKSIIEDNFPKNKRLKIRVGHGGTLDKYTEGVLAIGIGEG 89 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDA----------DGQIVEERPVT-FSAEQLAAA 111 TK + L DK Y G TDT+D G+ + + E L A Sbjct: 90 TKMLENYLKGDKEYICTGTFGFETDTNDILVSLTKIIVDQGKTIYTANWEYITDELLGKA 149 Query: 112 LDTFRGDIEQIPSMYSA 128 + + +G Q YS Sbjct: 150 IRSLKGFQVQESPTYSG 166 >UniRef50_UPI0000E46612 PREDICTED: similar to TruB pseudouridine (psi) synthase homolog 1 (E. coli), partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E46612 Length = 164 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 61/155 (39%), Gaps = 38/155 (24%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVK----------------------------------- 33 +NG+ + KP G++S + +VK Sbjct: 10 SKLNGLFAVRKPMGITSAKVVDRVKAALLRDLKKVEISANHEGDEQACSALGCPDKQRVD 69 Query: 34 --RIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDA 91 R + GH G LD ATG+L I G TK L K YR RLG+ TDT DA Sbjct: 70 GQRRIKLPKMGHGGTLDMNATGVLVIGCGRGTKLLSSYLQGGKVYRAQGRLGRATDTMDA 129 Query: 92 DGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSM 125 G+ VE + L L++F GDI Q+P + Sbjct: 130 SGKEVETAQFDHVTESGLERCLESFVGDILQVPPV 164 >UniRef50_UPI000186DFBE conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186DFBE Length = 308 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 90/278 (32%), Gaps = 61/278 (21%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYN----------------------- 37 MS+ + +NG++ + K G S + K++ Sbjct: 1 MSQAETAWKSLNGIINVYKSAGTSCSYVKHKIQSKLCSELNSLETRPVNKYIDLIQNNQQ 60 Query: 38 -------------ANRAGHTGA--------------LDPLATGMLPICLGEATKFSQYLL 70 A+ G L +G+L + + S+ L Sbjct: 61 DNQQALVKVRDSFADNILCVGPRYQPEDISISFPSPLGKNTSGVLVLGINRGKTLSKVLK 120 Query: 71 DSD--KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSM-- 125 + + K Y++ LGQ T D ++ + S + L +++ ++ Sbjct: 121 NLNFLKCYKIDGLLGQATTNFHIDATVIAKAKYSHISESLVHKTLASYQAASQKRLIEEY 180 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKG---TYIRT 182 YS Q ++LY+ G+ P+E Y + E +E++C + + T Sbjct: 181 YSN--TQSQELYDSLVAGLLRPKEILTPIFYSYKLVEFNPPEFTIEVYCINENESSLMNT 238 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 I +LG L A L+ + + + + + + Sbjct: 239 -IHNLGISLRSLATCTALKCVKYGFFGISDALLKKEWK 275 >UniRef50_A8NNZ6 CG7849-PB, putative n=1 Tax=Brugia malayi RepID=A8NNZ6_BRUMA Length = 351 Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 33/230 (14%), Positives = 88/230 (38%), Gaps = 16/230 (6%) Query: 49 PLATGMLPICLGEATKFSQYLLDS--DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSA 105 P ++G+ + + + L D Y + +LG+ T + G++ E + Sbjct: 106 PASSGLCLFGINDGRDMLESLRDRIWVNEYVLKGQLGRGTVQNKIRGKVNRECDYEHITH 165 Query: 106 EQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG 165 + ++ L + +++ + + + ++ +E AR+G+ P+ +Y + I Sbjct: 166 QHMSRFLMRLQAHYKKLAFELANVDLESQEAFELARKGLPRPKVLGAPVIYFIKLIYFNL 225 Query: 166 NELELEIHCSKGT--YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV-----TLEH 218 + +HC +++ I+++ LG A L R+ + + + TL++ Sbjct: 226 PHFTINLHCVCKDDNFLQDFINEIALSLGSVASCRQLLRIQLGPFNCTHSLLDKHFTLKN 285 Query: 219 LRELVEQAEQQDIPAAELLDPLLM------PMDSPASDYPVVNLPLTSSV 262 + ++ E+ + D ++ +D +D + L Sbjct: 286 ILRNMQLCEKIIKYDEKTPDKGIVKATAQSSVDDILNDEFIETLDDEEEN 335 >UniRef50_B7Q670 Putative uncharacterized protein n=1 Tax=Ixodes scapularis RepID=B7Q670_IXOSC Length = 213 Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 35/160 (21%), Positives = 60/160 (37%), Gaps = 33/160 (20%) Query: 58 CLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFR 116 C+G +T ++ +++ + V RLG T T DA G +VE +P S E + ALD FR Sbjct: 40 CVGTSTNQLRWFRLANRGFVVRGRLGSETSTFDASGDVVETQPYHHVSPEAVERALDRFR 99 Query: 117 GDIEQ-IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCS 175 G Q +P G + V RP+ + + + + + L Sbjct: 100 GHFFQDVPPP-----PDGGRAS-------PVAPIQRPVVCHAIACAQLDLPDFSL----- 142 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVT 215 LG A + L ++ + +E + Sbjct: 143 --------------ALGSRACLTSLEQVRQGPFTLEHALP 168 >UniRef50_Q609C4 TRNA pseudouridine synthase B, interruption-C n=1 Tax=Methylococcus capsulatus RepID=Q609C4_METCA Length = 122 Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 11/129 (8%) Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G LGCGAHV LRR V+ + V + VTLE L + L PM Sbjct: 2 EDIGHALGCGAHVEVLRRTTVAGFSVAQAVTLEQLEAMAPADRLD----------CLRPM 51 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 DS +P L ++ F++G V P+ LVRV G D +GR+A Sbjct: 52 DSMVQHWPAAWLDAGTARLFRHGQAVEGGDFPVGELVRVYGGGGVFLGIGCS-DGKGRIA 110 Query: 305 PRRLVVEYP 313 PRR+VV + Sbjct: 111 PRRVVVPWS 119 >UniRef50_A8X1P5 Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae RepID=A8X1P5_CAEBR Length = 338 Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 58/182 (31%), Gaps = 18/182 (9%) Query: 46 ALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI-----VEERP 100 L ++G+ + + R T+ DG I + Sbjct: 101 PLATNSSGICLFGINDGCDLV-----------AELRAKSWTNVYRLDGLIKKPVENQSEV 149 Query: 101 VTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF 160 + + ++ L + ++ + + + +E AR+G + +Y + Sbjct: 150 LKVTRHRIEKVLSRMESEFRGASFRHANVDLESSEAFELARRGTPRAQLPGAQIIYSIDL 209 Query: 161 IRHEGNELELEIHCSKGT--YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH 218 + CS +R +I+ +G LG + +I ++R + E + + Sbjct: 210 NWFRSPRFSVTAQCSGEDDEMLRRLIEHIGSNLGMESAIIRIQRQNFGPFGSENALLEKQ 269 Query: 219 LR 220 + Sbjct: 270 IN 271 >UniRef50_D0GJF7 tRNA pseudouridine synthase B (Fragment) n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GJF7_9FUSO Length = 168 Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 22/167 (13%) Query: 155 VYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV 214 + E+ ++ S GTYIRT++ D+G+K G A + L R + K+ +E V Sbjct: 5 IREIKINSENPKKISFYADVSSGTYIRTLVKDIGDKTGFYATMTKLVRTKIDKFSLEDAV 64 Query: 215 TLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPV---- 270 + + E ++ +D + ++ DY V KNG V Sbjct: 65 DIGKINEYFNISKIKDKINLKEVE--------YIFDYEKVITDYEKYKKLKNGMTVLFKK 116 Query: 271 ----RTSGAPLEGLVRVT----EGENGKFIGMGEIDDEG--RVAPRR 307 ++ ++ +F G+ +I +G + +R Sbjct: 117 NKFKDIEKINENKKYKLYLHNKTSKDKEFKGIVKIIKKGTDMIYIKR 163 >UniRef50_Q9SMH4 Trans-splicing factor Raa2, chloroplastic n=2 Tax=Chlamydomonas reinhardtii RepID=RAA2_CHLRE Length = 410 Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 3/114 (2%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKF 65 R NGVLL+DKP + + V+R A++ LD A+G++ +C G AT+ Sbjct: 129 RPEVLANGVLLVDKPPHWEVPEVVAAVQRATGADKVASVAPLDARASGLMLLCFGSATRL 188 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV---TFSAEQLAAALDTFR 116 + + + KRY LG + + D G + + E L A Sbjct: 189 APRVERAAKRYTGTLVLGGSSLSGDVRGGSFRAAQLPAEHLTDEDLREAAQGLV 242 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 20/40 (50%) Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 +R++I G +L A + LRR + + VE LE L Sbjct: 362 VRSLIAMYGRRLRTAACLDDLRRTEIGSFNVEEAWPLEAL 401 >UniRef50_Q9N3X3 Putative uncharacterized protein n=1 Tax=Caenorhabditis elegans RepID=Q9N3X3_CAEEL Length = 211 Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 5/141 (3%) Query: 85 RTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYAR 141 T+ DG I + + S ++ L + ++ + + + +E AR Sbjct: 5 WTNVYRIDGIIKKSENIDVSKISKHRIEKVLSRLESEFRSASFRHANVDMESSEAFELAR 64 Query: 142 QGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT--YIRTIIDDLGEKLGCGAHVIY 199 +G+ + VY + + + CS +R +I+ +G LG + I Sbjct: 65 RGVPRAQLPGSQIVYSIDLNWFRSPKFSVTTQCSGEDDEMLRQLIEHIGSNLGTESTTIR 124 Query: 200 LRRLAVSKYPVERMVTLEHLR 220 L+R + + + + + Sbjct: 125 LQRQNFGPFGSDNALLEKQIN 145 >UniRef50_B9F4Z0 Putative uncharacterized protein n=2 Tax=Oryza sativa RepID=B9F4Z0_ORYSJ Length = 113 Score = 87.6 bits (216), Expect = 6e-16, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV+ L+KP + S++ + K + + + H G LDP TG L +C+ AT+ + L + Sbjct: 31 GVINLNKPSNLLSHEVITWNKNLLHIEKTSHNGTLDPKVTGNLIVCVNRATRLVKSWLGA 90 Query: 73 DKRYRVIARLGQRTD 87 +A Sbjct: 91 SNECICVACFHAIVP 105 >UniRef50_Q3KMS7 TRNA pseudouridine synthase B n=1 Tax=Chlamydia trachomatis A/HAR-13 RepID=Q3KMS7_CHLTA Length = 85 Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 35/55 (63%) Query: 160 FIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMV 214 +++E L + CSKGTYIR+I +LG LGCGA++ LRRL + +++ + Sbjct: 1 MVKYEYPRLHFVVQCSKGTYIRSIAHELGNMLGCGAYLEELRRLRSGSFSIDQCI 55 >UniRef50_A4W1P3 Pseudouridine synthase n=2 Tax=Streptococcus RepID=A4W1P3_STRS2 Length = 105 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 15/120 (12%) Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 +G +H+ L R + + +TLE + LV + + L P++ D Sbjct: 1 MGYASHMSKLERTGSAGMDLADALTLEEISSLVAENDF----------SFLQPIERGIGD 50 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 PVV L G V + R+ +G+ I + E D+ P +++V Sbjct: 51 LPVVELKEEQVQDATFGRFVELNAEAE----RLAGFHDGQLIAIFEKRDQ-LYKPSKVLV 105 >UniRef50_UPI000180D082 PREDICTED: dyskerin n=1 Tax=Ciona intestinalis RepID=UPI000180D082 Length = 627 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 19/133 (14%) Query: 197 VIYLRRLAVSKYPVERM-VTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVN 255 + LRR+ VT+ + + Q L ++ P++ + + Sbjct: 329 MQELRRVRSGIMSENDDLVTMHDVLDAQYQ--LDHHKDETHLRRVISPLEKLLVSHKRII 386 Query: 256 LPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEID-------DE 300 L ++ G + G + +V +T + + + D Sbjct: 387 LKDSAVNAICYGAKILLPGVLRYEDGIEVNQEIVIITTKGEAICLAIALMTTAVISTCDH 446 Query: 301 GRV-APRRLVVEY 312 G V +R+++E Sbjct: 447 GIVAKIKRVIMER 459 >UniRef50_Q2R1N7 Kinetochore protein, putative n=1 Tax=Oryza sativa Japonica Group RepID=Q2R1N7_ORYSJ Length = 142 Score = 70.3 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%) Query: 28 ALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTD 87 + +KR+ N+ GH+G LDP TG L +C+ AT+ + + K Y +AR Sbjct: 59 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDLATRLVKSQQGAGKEYGCVARFHAAVP 118 >UniRef50_D1Y424 Putative uncharacterized protein n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y424_9BACT Length = 134 Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 39/114 (34%), Gaps = 10/114 (8%) Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R++ DLG LG GAH+ LRRL V Y E + Q L Sbjct: 1 MRSLARDLGRALGAGAHLSGLRRLCVGCYRAEEALPYN----------PQAPAGETELAG 50 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIG 293 + ++S AS Y + NG V S V E +G Sbjct: 51 RIQSVESLASQYYSYDANAFCEKRLSNGLGVYVSFMRFRNPGVVPVDEGVMVVG 104 >UniRef50_A2ARC1 TruB pseudouridine (Psi) synthase homolog 2 (E. coli) n=1 Tax=Mus musculus RepID=A2ARC1_MOUSE Length = 204 Score = 68.4 bits (166), Expect = 4e-10, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 5/102 (4%) Query: 23 MSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD--KRYRVIA 80 ++++ ++ + + G LD A+G+L + +G + D+ K Y V Sbjct: 75 LTTHRLVRGP--AFTNLKIGVGHRLDVQASGVLVLAVGHGRSLLTDMYDAHLTKDYTVRG 132 Query: 81 RLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQ 121 LG+ TD DG+++E+ + E+L L +G ++ Sbjct: 133 LLGKATDNFCEDGRLIEKTTYDHVTRERLDRILAVIQGSHQK 174 >UniRef50_UPI0000D5432F hypothetical protein P700755_23672 n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D5432F Length = 74 Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGM 54 R +G +L+DKP G +S+ + + +R GH G LDP ATG+ Sbjct: 26 EQRLASGFILVDKPAGPTSHQLAAWARDLLGLDRLGHGGTLDPFATGV 73 >UniRef50_A3DND5 DKCLD domain protein n=1 Tax=Staphylothermus marinus F1 RepID=A3DND5_STAMF Length = 94 Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 17/38 (44%), Positives = 27/38 (71%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDP 49 NGV+ LDKP G +S++ + +K+++ RAGH G L+P Sbjct: 51 NGVINLDKPPGPTSHEVVAWIKKMFELERAGHGGTLEP 88 >UniRef50_Q8SVK5 Putative uncharacterized protein ECU05_0680 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SVK5_ENCCU Length = 318 Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 10/88 (11%) Query: 15 LLLDKPQGMSSN-------DALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 ++++KP G+ + + K ++ + LD +G+L + + +K + Sbjct: 93 IVVNKPPGIPCHPTGGYREYCVTKA--LFGDEKVACINRLDMPVSGVLILAVRNHSKCLE 150 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQI 95 + D+ K Y G D D D +I Sbjct: 151 AIRDAKKIYVAKVY-GMFPDKVDVDKRI 177 >UniRef50_B7XJU4 Diaminohydroxyphosphoribosylaminopyrimidine deaminase n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XJU4_ENTBH Length = 331 Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 14 VLLLDKPQGMSSNDALQK-----VKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + +++KP G+ + K I+ G LD +G+L I + +Y Sbjct: 87 ITVVNKPFGIPCHPVGAYHYYTVTKTIFKNKPVGCVNRLDIPVSGVLIINTCNQKRIHEY 146 Query: 69 LLDSDKRYRVIA 80 LL+S K Y Sbjct: 147 LLNSKKIYIAKV 158 >UniRef50_B9SBQ9 Centromere/microtubule binding protein cbf5, putative n=1 Tax=Ricinus communis RepID=B9SBQ9_RICCO Length = 432 Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 25/40 (62%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLAT 52 GV+ LDKP SS++ + +KRI + GH+G L+P T Sbjct: 70 GVMNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLNPKVT 109 Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 16/101 (15%) Query: 228 QQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA--------PLEG 279 + L ++MP++ + Y + + ++ G + G E Sbjct: 105 NPKVTDETYLRRVIMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDVEVGEE 164 Query: 280 LVRVTEGENGKFIGMGEID-------DEGRV-APRRLVVEY 312 +V +T +G+ E+ D G V +R+V++ Sbjct: 165 VVLMTTKGEAVALGIAEMTTAVMATCDHGVVAKIKRVVMDR 205 >UniRef50_Q3IRF7 Putative uncharacterized protein n=1 Tax=Natronomonas pharaonis DSM 2160 RepID=Q3IRF7_NATPD Length = 412 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 47/160 (29%), Gaps = 44/160 (27%) Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGD-IEQIPSMYSA 128 D DK YR G AAL G IEQ Sbjct: 276 HDGDKTYRATVEFGAA-----------------VDESDFEAALAELDGTTIEQRTPH--- 315 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID--- 185 + ++ + R+ TV ++ + +E+H G YI+ ++ Sbjct: 316 -RVDHRRA-DLVRE----------RTVLDIDGELEADHAATVEVHGEGGLYIKELMSGDE 363 Query: 186 -----DLGEKLGCGAHVIYLRRLAVSKYP---VERMVTLE 217 L LG GA V L LAV + LE Sbjct: 364 GRTEPSLAGLLGVGATVTALDVLAVEGVDEPFLTDDYRLE 403 >UniRef50_C4QHQ2 Expressed protein n=1 Tax=Schistosoma mansoni RepID=C4QHQ2_SCHMA Length = 316 Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 7/91 (7%) Query: 135 KLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT--YIRTIIDDLGEKLG 192 + YE+ E R V + + + +EI T + ++ +LG KL Sbjct: 211 RKYEW-----EEERRQMAPYVNAMRCVDFDPPFFTIEIQVIHETLKFFIDLVGNLGPKLR 265 Query: 193 CGAHVIYLRRLAVSKYPVERMVTLEHLRELV 223 + RR+ E + ++HL + Sbjct: 266 TATLLSKARRVRHGPITAENSLLMKHLHNIP 296 >UniRef50_A0B7V3 THUMP domain protein n=5 Tax=Methanosarcinales RepID=A0B7V3_METTP Length = 452 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 23/124 (18%) Query: 94 QIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPI 153 + + E V E+L +AL G +EQ + ++ + R Sbjct: 336 EALIEFSVPVEEEKLKSALSRLIGFVEQRTPT----RVSHRRA-----------DKVRRR 380 Query: 154 TVYELLFIRHEGNELELEIHCSKGTYIRTIID--------DLGEKLGCGAHVIYLRRLAV 205 V+ G + + C G Y++ +I L E L A V+ L + V Sbjct: 381 AVHSAELEEFSGRTARITVRCDSGLYVKELISGDAGRTRPSLAELLESDARVVELDVIDV 440 Query: 206 SKYP 209 P Sbjct: 441 GGVP 444 >UniRef50_D2LNT6 Pseudouridylate synthase 10-like protein n=3 Tax=Aciduliprofundum boonei T469 RepID=D2LNT6_9EURY Length = 360 Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 23/113 (20%) Query: 101 VTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF 160 V SAE+L +ALD+ G I Q + + ++ + R VYE+ Sbjct: 260 VDASAEELKSALDSLIGKISQRTPT----RVKHRRA-----------DKVRIKEVYEVKL 304 Query: 161 IRHEGNELELEIHCSKGTYIRTIID--------DLGEKLGCGAHVIYLRRLAV 205 I + +E+ GTYI+ ++ L EKLG V++L + + Sbjct: 305 IGKDNEAWVVEVLAQSGTYIKELMHGDNGRTSPSLAEKLGKKLEVLWLDVIEI 357 >UniRef50_B9CXH0 tRNA pseudouridine synthase B (Fragment) n=1 Tax=Actinobacillus minor 202 RepID=B9CXH0_9PAST Length = 67 Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAP-LEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 S+ P +NL + G V+ + GLVR+ +F+G+ EI + + P Sbjct: 3 AVSNLPKINLNEQQTKAVGFGQRVKFENVEQMYGLVRLF-SNTAQFLGVAEITADDVIRP 61 Query: 306 RRLV 309 R+V Sbjct: 62 NRMV 65 >UniRef50_C7P3R6 THUMP domain protein n=3 Tax=Halobacteriaceae RepID=C7P3R6_HALMD Length = 438 Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 28/149 (18%) Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRG-DIEQIPS 124 + L + + + + T D L A G IEQ Sbjct: 293 VEGLRRATHDMVARVKEHEASKTYRMD----VAFDEPIEEVTLDDAFAAIDGATIEQRTP 348 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 + ++ R VY++ + ++E+H + G Y++ +I Sbjct: 349 Q----RVDHRRA-----------DITRTRDVYDISGELDDARNADIEVHGAGGLYVKELI 393 Query: 185 D--------DLGEKLGCGAHVIYLRRLAV 205 +L +++G GA V L L V Sbjct: 394 SGDEGRTQPNLADEVGTGAVVTALDVLDV 422 >UniRef50_UPI00019042A3 tRNA pseudouridine synthase B n=1 Tax=Rhizobium etli Brasil 5 RepID=UPI00019042A3 Length = 65 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%) Query: 257 PLTSSVYFKNGNPVRTSG-APLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 + K GNP+ G G+ I +GEI +G P+R+ Sbjct: 12 NDDQAHRLKMGNPILVRGRDAPIAESEAYATARGRLIAIGEI-GQGEFRPKRVFA 65 >UniRef50_D2RX25 Pseudouridylate synthase-like protein n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RX25_9EURY Length = 457 Score = 42.9 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 50/176 (28%), Gaps = 46/176 (26%) Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGD-IEQIPSMYSA 128 D+ KRYR AAL+ G ++Q Sbjct: 317 HDASKRYRADVEF-----------------ANPVDEADFEAALEELSGTNVQQDTPQ--- 356 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID--- 185 + ++ + R+ TVY++ E E+ +H G Y++ +I Sbjct: 357 -RVDHRRA-DLTRE----------RTVYDIDGELRSPTEAEVRLHGEGGLYVKELISSDD 404 Query: 186 -----DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 L L A V L + VE L E + D AA Sbjct: 405 GRTEPSLAGLLETDAEVTALDV-----FGVEGEDEPFELEEYFLDEPRDDGEAASA 455 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 41.8 bits (97), Expect = 0.031, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 22/153 (14%) Query: 15 LLLDKPQGMSSN-------DALQKV--KRIYNANRAGHTGALDPLATGMLPICLGE---A 62 +L+KP+GM S + + ++ + R H G LD G L + + A Sbjct: 143 FVLNKPRGMHSTMSDELGRPCVGDLVSEKTASGQRLFHVGRLDADTEG-LLLLTNDGELA 201 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTD---TSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 + + K Y R G+ T+ ++ DG +E+ P A +D F+G Sbjct: 202 NRLMHPKYEVSKTYLATVR-GEATNKLVSALRDGVELEDGPA---KADFAQIIDVFQGKS 257 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARP 152 ++ K+ ++L++ G V R R Sbjct: 258 LLRIEIHEGRKHIVRRLFD--ELGFPVERLVRT 288 >UniRef50_A5DTZ4 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DTZ4_LODEL Length = 430 Score = 41.8 bits (97), Expect = 0.033, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 14/81 (17%) Query: 14 VLLLDKPQGMSSNDALQK--------VKRIYNANRAGHTGALDPLATGMLPICLGE--AT 63 ++++DKP G+ + VK ++N + LD + +G++ +C A Sbjct: 116 IIVIDKPSGIPVHPTGSYMFNSLSEIVKEMFNFDNIWTCHRLDKVTSGVVILCKNRDAAV 175 Query: 64 KFSQYLLDSD----KRYRVIA 80 KF LL+ K Y Sbjct: 176 KFLNILLEKSDKVKKIYLARV 196 >UniRef50_Q2GY16 Putative uncharacterized protein n=1 Tax=Chaetomium globosum RepID=Q2GY16_CHAGB Length = 250 Score = 41.8 bits (97), Expect = 0.033, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 188 GEKLGCGAHVIYLRRLAVSKYPV--ERMVTLEHLRELVEQAEQQDIPAAELLDP 239 GE LGCGA + L R ++ + E + + L + + + +L + Sbjct: 121 GEMLGCGAMMAELSRTRQGQFAIGGENCLQYDELFQGEDVWGPKVDRMLDLWNN 174 >UniRef50_Q8TUV7 Predicted pseudouridylate synthase n=1 Tax=Methanopyrus kandleri RepID=Q8TUV7_METKA Length = 436 Score = 41.4 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 38/144 (26%) Query: 59 LGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RG 117 +G+ S+ S KRYR + G+ ++L L R Sbjct: 308 VGKVKDLSER---SRKRYRAWVKFGK-----------------PVPEDKLREVLKGLERS 347 Query: 118 DIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKG 177 IEQ + ++ + R+ V+E I ++G+ +E C G Sbjct: 348 VIEQRTPR----RVLHRRADKVRRK-----------RVHEAKLIEYDGDRAVIEFLCDPG 392 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLR 201 Y++ +I G+ + L Sbjct: 393 LYVKELIS--GDAGRTRPSLAELV 414 >UniRef50_Q649E8 Putative uncharacterized protein n=2 Tax=environmental samples RepID=Q649E8_9ARCH Length = 415 Score = 41.0 bits (95), Expect = 0.055, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 47/142 (33%), Gaps = 43/142 (30%) Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGD-IEQIPSMYSALKY 131 DK YR + L E L +ALD G IEQ L+ Sbjct: 306 DKTYRAVVSLKT-----------------DVLEEDLRSALDNLIGAVIEQRTP----LRV 344 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID------ 185 ++ + R+ VY+ I E +E + C G YI+ +I Sbjct: 345 VHRRA-DLVRK----------RKVYDARVISFEVPIVEFK--CDGGLYIKELISGDNGRT 391 Query: 186 --DLGEKLGCGAHVIYLRRLAV 205 L E LG A V L + V Sbjct: 392 IPSLSELLGTEAKVKELDVVDV 413 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.154 0.436 Lambda K H 0.267 0.0469 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,403,080,422 Number of Sequences: 3077464 Number of extensions: 62123245 Number of successful extensions: 156370 Number of sequences better than 1.0e-01: 430 Number of HSP's better than 0.1 without gapping: 809 Number of HSP's successfully gapped in prelim test: 45 Number of HSP's that attempted gapping in prelim test: 153553 Number of HSP's gapped (non-prelim): 993 length of query: 314 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 186 effective length of database: 646,480,964 effective search space: 120245459304 effective search space used: 120245459304 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 93 (40.2 bits)