BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (314 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A1JIX1 tRNA pseudouridine synthase B n=327 Tax=Gammapro... 460 e-128 UniRef50_Q1LSL0 tRNA pseudouridine synthase B n=1 Tax=Baumannia ... 327 3e-88 UniRef50_Q8K9H3 tRNA pseudouridine synthase B n=4 Tax=Buchnera a... 325 9e-88 UniRef50_Q1GXD4 tRNA pseudouridine synthase B n=4 Tax=Betaproteo... 311 3e-83 UniRef50_Q89AF6 tRNA pseudouridine synthase B n=1 Tax=Buchnera a... 307 2e-82 UniRef50_A8PNK9 tRNA pseudouridine synthase B n=1 Tax=Rickettsie... 298 1e-79 UniRef50_B3PI98 tRNA pseudouridine synthase B n=5 Tax=Gammaprote... 296 5e-79 UniRef50_UPI0000E0F5A1 tRNA pseudouridine synthase B n=1 Tax=Gla... 296 8e-79 UniRef50_D0L0S4 tRNA pseudouridine synthase B n=1 Tax=Halothioba... 291 2e-77 UniRef50_A1WXU9 tRNA pseudouridine synthase B n=4 Tax=Gammaprote... 284 3e-75 UniRef50_Q2BH44 TRNA pseudouridine synthase B n=1 Tax=Neptuniiba... 281 2e-74 UniRef50_Q21H63 tRNA pseudouridine synthase B n=5 Tax=Gammaprote... 271 2e-71 UniRef50_A3WPV5 TRNA pseudouridine 5S synthase n=1 Tax=Idiomarin... 270 5e-71 UniRef50_Q1QSZ2 tRNA pseudouridine synthase B n=3 Tax=Proteobact... 270 5e-71 UniRef50_Q057K1 TRNA pseudouridine 55 synthetase n=1 Tax=Buchner... 268 1e-70 UniRef50_Q2SML1 tRNA pseudouridine synthase B n=3 Tax=Gammaprote... 265 1e-69 UniRef50_Q6F7I5 tRNA pseudouridine synthase B n=20 Tax=Proteobac... 265 2e-69 UniRef50_C4ZJR7 tRNA pseudouridine synthase B n=4 Tax=Betaproteo... 265 2e-69 UniRef50_Q493T5 tRNA pseudouridine synthase B n=2 Tax=Candidatus... 259 7e-68 UniRef50_C5AH02 TRNA pseudouridine synthase B n=3 Tax=Burkholder... 259 1e-67 UniRef50_C1D8X0 TruB n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 259 1e-67 UniRef50_A5CXX8 tRNA pseudouridine synthase B n=3 Tax=Bacteria R... 257 3e-67 UniRef50_Q1MZS4 TRNA pseudouridine synthase B n=1 Tax=Bermanella... 254 3e-66 UniRef50_Q5X1C5 tRNA pseudouridine synthase B n=4 Tax=Legionella... 250 5e-65 UniRef50_A4G7S5 tRNA pseudouridine synthase B (TRNA pseudouridin... 247 5e-64 UniRef50_UPI0000E87C37 tRNA pseudouridine synthase B n=1 Tax=Met... 238 1e-61 UniRef50_A1KUJ6 tRNA pseudouridine synthase B n=5 Tax=Neisseriac... 238 3e-61 UniRef50_Q2Y7W4 tRNA pseudouridine synthase B n=3 Tax=Nitrosomon... 236 8e-61 UniRef50_B9ZLN1 tRNA pseudouridine synthase B n=1 Tax=Thioalkali... 234 4e-60 UniRef50_B4RMB1 tRNA pseudouridine synthase B n=20 Tax=Betaprote... 233 8e-60 UniRef50_B1XV87 tRNA pseudouridine synthase B n=2 Tax=Polynucleo... 231 2e-59 UniRef50_Q31GK3 tRNA pseudouridine synthase B n=1 Tax=Thiomicros... 230 5e-59 UniRef50_Q8D2X8 tRNA pseudouridine synthase B n=1 Tax=Wiggleswor... 228 2e-58 UniRef50_C6MD69 tRNA pseudouridine synthase B n=1 Tax=Nitrosomon... 222 1e-56 UniRef50_Q2KXZ0 tRNA pseudouridine synthase B n=2 Tax=Proteobact... 221 2e-56 UniRef50_Q3BRP7 tRNA pseudouridine synthase B n=20 Tax=Xanthomon... 218 2e-55 UniRef50_A7NAR1 tRNA pseudouridine synthase B n=19 Tax=Francisel... 214 4e-54 UniRef50_A1WLI1 tRNA pseudouridine synthase B n=103 Tax=cellular... 213 5e-54 UniRef50_A8MFB1 tRNA pseudouridine synthase B n=1 Tax=Alkaliphil... 213 6e-54 UniRef50_A6GNL1 tRNA pseudouridine synthase B n=2 Tax=Burkholder... 213 8e-54 UniRef50_Q8RA40 tRNA pseudouridine synthase B n=10 Tax=Thermoana... 211 3e-53 UniRef50_C8NA97 tRNA pseudouridine synthase B n=1 Tax=Cardiobact... 209 1e-52 UniRef50_Q3SWP7 tRNA pseudouridine synthase B n=100 Tax=Alphapro... 208 2e-52 UniRef50_C7I1W4 tRNA pseudouridine synthase B n=1 Tax=Thiomonas ... 208 3e-52 UniRef50_Q4FVL3 tRNA pseudouridine synthase B n=10 Tax=Bacteria ... 205 2e-51 UniRef50_C0GIW2 tRNA pseudouridine synthase B n=1 Tax=Dethiobact... 204 5e-51 UniRef50_Q3A4A3 tRNA pseudouridine synthase B n=2 Tax=Desulfurom... 202 1e-50 UniRef50_Q0SSD7 tRNA pseudouridine synthase B n=33 Tax=Clostridi... 201 3e-50 UniRef50_A7VT62 Putative uncharacterized protein n=2 Tax=Bacteri... 201 4e-50 UniRef50_B8FR03 tRNA pseudouridine synthase B n=2 Tax=Desulfitob... 200 5e-50 UniRef50_C7GDK4 tRNA pseudouridine 55 synthase n=6 Tax=Clostridi... 200 6e-50 UniRef50_Q609C2 tRNA pseudouridine synthase B n=1 Tax=Methylococ... 199 1e-49 UniRef50_A8LL26 tRNA pseudouridine synthase B n=42 Tax=Rhodobact... 198 2e-49 UniRef50_A8FDD4 tRNA pseudouridine synthase B n=29 Tax=Bacilli R... 196 8e-49 UniRef50_C4Z5P0 tRNA pseudouridine synthase B n=2 Tax=Bacteria R... 196 1e-48 UniRef50_B8I6F0 tRNA pseudouridine synthase B n=5 Tax=Clostridiu... 195 2e-48 UniRef50_Q18BH7 tRNA pseudouridine synthase B n=8 Tax=Clostridia... 193 5e-48 UniRef50_C0ZF47 tRNA pseudouridine synthase B n=1 Tax=Brevibacil... 193 7e-48 UniRef50_A5EWY7 TRNA pseudouridine synthase B n=1 Tax=Dichelobac... 193 8e-48 UniRef50_C4GBF3 Putative uncharacterized protein n=1 Tax=Shuttle... 193 8e-48 UniRef50_A5D2S3 tRNA pseudouridine synthase B n=3 Tax=Peptococca... 192 9e-48 UniRef50_C4ZBF1 tRNA pseudouridine synthase B n=9 Tax=Firmicutes... 192 1e-47 UniRef50_A7H9F6 tRNA pseudouridine synthase B n=4 Tax=Anaeromyxo... 191 2e-47 UniRef50_B0PH12 Putative uncharacterized protein n=3 Tax=Clostri... 191 4e-47 UniRef50_D0LZ86 tRNA pseudouridine synthase B n=1 Tax=Haliangium... 190 6e-47 UniRef50_Q98BI6 tRNA pseudouridine synthase B n=2 Tax=Mesorhizob... 189 1e-46 UniRef50_Q01SZ5 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 189 1e-46 UniRef50_B1ZX46 tRNA pseudouridine synthase B n=3 Tax=Verrucomic... 188 3e-46 UniRef50_B8FCY8 tRNA pseudouridine synthase B n=1 Tax=Desulfatib... 187 5e-46 UniRef50_C7RGP3 tRNA pseudouridine synthase B n=4 Tax=Anaerococc... 186 7e-46 UniRef50_B3DZL5 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 186 9e-46 UniRef50_A1HSB7 TRNA pseudouridine synthase B n=1 Tax=Thermosinu... 186 9e-46 UniRef50_A0LE16 tRNA pseudouridine synthase B n=1 Tax=Magnetococ... 186 1e-45 UniRef50_B2A3A0 tRNA pseudouridine synthase B n=1 Tax=Natranaero... 186 1e-45 UniRef50_O66922 tRNA pseudouridine synthase B n=2 Tax=Aquificace... 186 1e-45 UniRef50_B1GZN9 tRNA pseudouridine synthase B n=1 Tax=uncultured... 185 2e-45 UniRef50_Q2RMR8 tRNA pseudouridine synthase B n=11 Tax=Alphaprot... 185 2e-45 UniRef50_C7H6A8 tRNA pseudouridine synthase B n=2 Tax=Faecalibac... 184 3e-45 UniRef50_Q812X9 tRNA pseudouridine synthase B n=128 Tax=Bacilli ... 182 1e-44 UniRef50_A1AMM4 tRNA pseudouridine synthase B n=2 Tax=Desulfurom... 182 2e-44 UniRef50_Q0AYI5 tRNA pseudouridine synthase B n=1 Tax=Syntrophom... 182 2e-44 UniRef50_B8CW75 tRNA pseudouridine 55 synthase n=1 Tax=Halotherm... 182 2e-44 UniRef50_B5YJI4 tRNA pseudouridine synthase B n=1 Tax=Thermodesu... 181 2e-44 UniRef50_Q0EZ77 TRNA pseudouridine synthase B n=1 Tax=Mariprofun... 181 2e-44 UniRef50_A8RZ93 Putative uncharacterized protein n=8 Tax=Clostri... 180 5e-44 UniRef50_A0LHM2 tRNA pseudouridine synthase B n=1 Tax=Syntrophob... 180 6e-44 UniRef50_A5UZQ6 tRNA pseudouridine synthase B n=5 Tax=Chloroflex... 180 6e-44 UniRef50_D2RKW1 tRNA pseudouridine synthase B n=1 Tax=Acidaminoc... 180 7e-44 UniRef50_B1YI60 tRNA pseudouridine synthase B n=2 Tax=Exiguobact... 180 7e-44 UniRef50_C6D2E9 tRNA pseudouridine synthase B n=2 Tax=Paenibacil... 179 8e-44 UniRef50_Q2LWU1 tRNA pseudouridine synthase B n=1 Tax=Syntrophus... 179 8e-44 UniRef50_A5GF89 tRNA pseudouridine synthase B n=7 Tax=Geobacter ... 179 1e-43 UniRef50_UPI00016C0EBC tRNA pseudouridine synthase B n=1 Tax=Epu... 179 1e-43 UniRef50_C8P7Y2 tRNA pseudouridine synthase B n=1 Tax=Lactobacil... 179 1e-43 UniRef50_D1VSB0 tRNA pseudouridine synthase B n=1 Tax=Peptoniphi... 178 2e-43 UniRef50_C6HXK4 tRNA pseudouridine synthase B n=1 Tax=Leptospiri... 177 5e-43 UniRef50_D1N2Y9 tRNA pseudouridine synthase B n=2 Tax=Lentisphae... 177 5e-43 UniRef50_D1PLN1 tRNA pseudouridine synthase B n=1 Tax=Subdoligra... 177 5e-43 UniRef50_B0THR7 tRNA pseudouridine synthase B n=2 Tax=Heliobacte... 176 1e-42 UniRef50_UPI00016C5566 TruB n=1 Tax=Gemmata obscuriglobus UQM 22... 175 2e-42 UniRef50_Q6MMS4 tRNA pseudouridine synthase B n=1 Tax=Bdellovibr... 174 3e-42 UniRef50_Q2RJM2 tRNA pseudouridine synthase B n=1 Tax=Moorella t... 174 4e-42 UniRef50_C0QUQ5 tRNA pseudouridine synthase B n=5 Tax=Aquificale... 174 4e-42 UniRef50_Q1G9Q1 tRNA pseudouridine synthase B n=27 Tax=Lactobaci... 173 6e-42 UniRef50_Q04ED7 tRNA pseudouridine synthase B n=1 Tax=Oenococcus... 173 9e-42 UniRef50_D2MK32 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 172 9e-42 UniRef50_A9KNW1 tRNA pseudouridine synthase B n=6 Tax=Clostridia... 172 1e-41 UniRef50_C7N8V4 tRNA pseudouridine synthase B n=1 Tax=Leptotrich... 171 2e-41 UniRef50_C3RL16 tRNA pseudouridine synthase B n=4 Tax=Bacteria R... 171 2e-41 UniRef50_C6P7U8 tRNA pseudouridine synthase B n=1 Tax=Thermoanae... 171 3e-41 UniRef50_A9AV52 tRNA pseudouridine synthase B n=1 Tax=Herpetosip... 171 3e-41 UniRef50_A4J5W9 tRNA pseudouridine synthase B n=1 Tax=Desulfotom... 171 4e-41 UniRef50_C2KV13 tRNA pseudouridine 55 synthase n=6 Tax=Bacteria ... 170 5e-41 UniRef50_Q3ZXU5 tRNA pseudouridine synthase B n=5 Tax=Dehalococc... 170 6e-41 UniRef50_B3WER2 tRNA pseudouridine synthase B n=9 Tax=Lactobacil... 170 6e-41 UniRef50_Q67P83 tRNA pseudouridine synthase B n=3 Tax=Bacteria R... 169 8e-41 UniRef50_UPI000178873D tRNA pseudouridine synthase B n=1 Tax=Geo... 169 9e-41 UniRef50_Q9Z5I4 tRNA pseudouridine synthase B n=3 Tax=Mycobacter... 169 9e-41 UniRef50_B9XFC5 tRNA pseudouridine synthase B n=1 Tax=bacterium ... 169 1e-40 UniRef50_A9IMS8 tRNA pseudouridine synthase B n=3 Tax=Bartonella... 169 1e-40 UniRef50_D1CFW9 tRNA pseudouridine synthase B n=1 Tax=Thermobacu... 169 1e-40 UniRef50_C0WBC5 tRNA pseudouridine synthase B n=1 Tax=Acidaminoc... 169 2e-40 UniRef50_Q4L5X4 tRNA pseudouridine synthase B n=68 Tax=Bacilli R... 168 3e-40 UniRef50_UPI000185BE2E tRNA pseudouridine synthase B n=1 Tax=Cor... 167 4e-40 UniRef50_B6BVJ8 tRNA pseudouridine synthase B n=1 Tax=beta prote... 167 4e-40 UniRef50_Q5WFU5 tRNA pseudouridine synthase B n=2 Tax=Bacillacea... 167 4e-40 UniRef50_Q1WUF2 tRNA pseudouridine synthase B n=28 Tax=Firmicute... 166 7e-40 UniRef50_Q6AJY7 tRNA pseudouridine synthase B n=1 Tax=Desulfotal... 166 8e-40 UniRef50_A8VS66 Pseudouridine synthase-like protein n=2 Tax=Baci... 166 8e-40 UniRef50_A8ZZ61 tRNA pseudouridine synthase B n=1 Tax=Desulfococ... 165 2e-39 UniRef50_C9R8X3 tRNA pseudouridine synthase B n=1 Tax=Ammonifex ... 165 2e-39 UniRef50_B8DW45 tRNA pseudouridine synthase B n=5 Tax=Bifidobact... 165 2e-39 UniRef50_A5VJE2 tRNA pseudouridine synthase B n=18 Tax=Lactobaci... 165 2e-39 UniRef50_Q02Z55 tRNA pseudouridine synthase B n=21 Tax=Streptoco... 164 4e-39 UniRef50_B6AR13 tRNA pseudouridine synthase B n=2 Tax=Leptospiri... 164 5e-39 UniRef50_C1F2Z6 tRNA pseudouridine synthase B n=1 Tax=Acidobacte... 163 8e-39 UniRef50_A8SMZ3 Putative uncharacterized protein n=1 Tax=Parvimo... 162 1e-38 UniRef50_C2C2D8 tRNA pseudouridine synthase B n=3 Tax=Listeria R... 162 1e-38 UniRef50_C8WI31 tRNA pseudouridine synthase B n=2 Tax=Coriobacte... 162 1e-38 UniRef50_A3VQI2 TRNA pseudouridine synthase B n=2 Tax=Alphaprote... 162 1e-38 UniRef50_UPI0001C373A4 tRNA pseudouridine synthase B n=1 Tax=Rum... 162 1e-38 UniRef50_B9YSP0 tRNA pseudouridine synthase B n=3 Tax=Nostocacea... 162 1e-38 UniRef50_C8WWJ2 tRNA pseudouridine synthase B n=2 Tax=Alicycloba... 162 2e-38 UniRef50_Q8R5X8 tRNA pseudouridine synthase B n=16 Tax=Fusobacte... 162 2e-38 UniRef50_Q5PAY2 tRNA pseudouridine synthase B n=10 Tax=Anaplasma... 161 3e-38 UniRef50_C9MUE6 tRNA pseudouridine synthase B n=1 Tax=Leptotrich... 161 3e-38 UniRef50_C6IW07 tRNA pseudouridine synthase B n=1 Tax=Paenibacil... 161 3e-38 UniRef50_C6LME9 tRNA pseudouridine synthase B n=1 Tax=Bryantella... 161 3e-38 UniRef50_Q2J732 tRNA pseudouridine synthase B n=1 Tax=Frankia sp... 160 4e-38 UniRef50_B3CM19 tRNA pseudouridine synthase B n=5 Tax=Wolbachia ... 160 4e-38 UniRef50_C2BRN4 Possible tRNA-pseudouridine synthase I n=1 Tax=M... 160 5e-38 UniRef50_A4A2R8 TRNA pseudouridine synthase B (Fragment) n=1 Tax... 160 8e-38 UniRef50_A2RE90 tRNA pseudouridine synthase B n=24 Tax=Streptoco... 159 1e-37 UniRef50_D0MI93 tRNA pseudouridine synthase B n=1 Tax=Rhodotherm... 159 1e-37 UniRef50_Q6MD66 tRNA pseudouridine synthase B n=15 Tax=Chlamydia... 159 1e-37 UniRef50_A0QIX1 tRNA pseudouridine synthase B n=93 Tax=Actinomyc... 159 1e-37 UniRef50_D1AS76 tRNA pseudouridine synthase B n=1 Tax=Anaplasma ... 158 2e-37 UniRef50_Q1IPJ6 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 158 2e-37 UniRef50_B9Y7W5 Putative uncharacterized protein n=1 Tax=Holdema... 158 3e-37 UniRef50_B4WM04 tRNA pseudouridine synthase B, putative n=1 Tax=... 158 3e-37 UniRef50_Q4JV56 tRNA pseudouridine synthase B n=5 Tax=Corynebact... 158 3e-37 UniRef50_C7MBA9 tRNA pseudouridine synthase B n=1 Tax=Brachybact... 157 3e-37 UniRef50_B2UQ50 tRNA pseudouridine synthase B n=3 Tax=Verrucomic... 157 4e-37 UniRef50_C4FYS6 Putative uncharacterized protein n=1 Tax=Abiotro... 157 4e-37 UniRef50_Q5FQM1 tRNA pseudouridine synthase B n=9 Tax=Acetobacte... 157 5e-37 UniRef50_Q1NKV8 TRNA pseudouridine synthase B n=3 Tax=Deltaprote... 155 1e-36 UniRef50_D0WDY9 tRNA pseudouridine synthase B n=1 Tax=Slackia ex... 154 3e-36 UniRef50_A9BI94 tRNA pseudouridine synthase B n=1 Tax=Petrotoga ... 154 3e-36 UniRef50_Q38W87 tRNA pseudouridine synthase B n=3 Tax=Lactobacil... 154 3e-36 UniRef50_Q2G5F3 tRNA pseudouridine synthase B n=8 Tax=Sphingomon... 154 5e-36 UniRef50_C7MNL5 tRNA pseudouridine 55 synthase n=1 Tax=Cryptobac... 153 9e-36 UniRef50_C0QHM4 TruB n=1 Tax=Desulfobacterium autotrophicum HRM2... 153 9e-36 UniRef50_A7BD72 Putative uncharacterized protein n=1 Tax=Actinom... 152 1e-35 UniRef50_A1R520 tRNA pseudouridine synthase B n=14 Tax=Actinomyc... 152 1e-35 UniRef50_C2CXC9 Possible tRNA-pseudouridine synthase I n=1 Tax=G... 152 2e-35 UniRef50_B9MR51 tRNA pseudouridine synthase B n=1 Tax=Anaerocell... 151 3e-35 UniRef50_D0WR19 tRNA pseudouridine synthase B n=1 Tax=Actinomyce... 150 4e-35 UniRef50_C4V3N1 tRNA pseudouridine 55 synthase n=1 Tax=Selenomon... 150 5e-35 UniRef50_D2Q8K5 TruB tRNA pseudouridine synthase B n=6 Tax=Bifid... 150 5e-35 UniRef50_C1E906 Predicted protein n=5 Tax=Eukaryota RepID=C1E906... 150 6e-35 UniRef50_C2KR47 Possible tRNA-pseudouridine synthase I n=2 Tax=M... 149 9e-35 UniRef50_Q14NU4 Putative trna pseudouridine synthase b protein n... 149 1e-34 UniRef50_C7NH20 tRNA pseudouridine 55 synthase n=1 Tax=Kytococcu... 148 2e-34 UniRef50_Q0C5Z2 tRNA pseudouridine synthase B n=1 Tax=Hyphomonas... 148 2e-34 UniRef50_P59881 tRNA pseudouridine synthase B n=15 Tax=Cyanobact... 148 2e-34 UniRef50_C0W0C7 Possible tRNA-pseudouridine synthase I n=1 Tax=A... 148 2e-34 UniRef50_A6LLV6 tRNA pseudouridine synthase B n=1 Tax=Thermosiph... 148 2e-34 UniRef50_C0GUB0 tRNA pseudouridine synthase B n=1 Tax=Desulfonat... 147 3e-34 UniRef50_B9KZ57 tRNA pseudouridine synthase B n=2 Tax=Thermomicr... 147 6e-34 UniRef50_P59880 tRNA pseudouridine synthase B n=2 Tax=Prochloroc... 147 7e-34 UniRef50_UPI00004C24EE COG0130: Pseudouridine synthase n=1 Tax=S... 146 7e-34 UniRef50_A5IIS7 tRNA pseudouridine synthase B n=9 Tax=Thermotoga... 146 7e-34 UniRef50_D1IN94 Whole genome shotgun sequence of line PN40024, s... 146 9e-34 UniRef50_B1MZH0 tRNA pseudouridine synthase B n=3 Tax=Leuconosto... 146 1e-33 UniRef50_D1AL32 tRNA pseudouridine synthase B n=1 Tax=Sebaldella... 146 1e-33 UniRef50_D2NNU2 Pseudouridine synthase n=2 Tax=Rothia mucilagino... 146 1e-33 UniRef50_A4S143 Predicted protein n=3 Tax=Mamiellales RepID=A4S1... 145 1e-33 UniRef50_C7LXY6 tRNA pseudouridine synthase B n=1 Tax=Acidimicro... 145 1e-33 UniRef50_C9KKC7 tRNA pseudouridine synthase B n=3 Tax=Veillonell... 145 2e-33 UniRef50_B0S1E2 tRNA pseudouridine 5S synthase n=2 Tax=Finegoldi... 145 2e-33 UniRef50_B7ICP6 tRNA pseudouridine synthase B n=1 Tax=Thermosiph... 145 2e-33 UniRef50_B1X5A1 Putative tRNA pseudouridine 55 synthase n=1 Tax=... 144 3e-33 UniRef50_B7KGX7 tRNA pseudouridine synthase B n=19 Tax=Cyanobact... 144 3e-33 UniRef50_Q46JB9 tRNA pseudouridine synthase B n=2 Tax=Prochloroc... 144 3e-33 UniRef50_B3DQF2 tRNA pseudouridine synthase B n=6 Tax=Bifidobact... 143 9e-33 UniRef50_A4XL67 tRNA pseudouridine synthase B n=1 Tax=Caldicellu... 143 1e-32 UniRef50_A6GK85 TruB (Fragment) n=1 Tax=Plesiocystis pacifica SI... 142 1e-32 UniRef50_B0NZN2 Putative uncharacterized protein n=1 Tax=Clostri... 142 1e-32 UniRef50_Q820Z5 tRNA pseudouridine synthase B n=2 Tax=Tropheryma... 141 2e-32 UniRef50_C4LJ77 tRNA pseudouridine synthase B n=1 Tax=Corynebact... 141 3e-32 UniRef50_Q0WVR7 tRNA synthase-like protein n=10 Tax=Magnoliophyt... 141 3e-32 UniRef50_D2MPT8 tRNA pseudouridine synthase B n=1 Tax=Bulleidia ... 141 3e-32 UniRef50_C7R3E1 tRNA pseudouridine synthase B n=1 Tax=Jonesia de... 141 4e-32 UniRef50_Q7MBB8 tRNA pseudouridine synthase B n=3 Tax=Cyanobacte... 140 4e-32 UniRef50_Q1AW51 tRNA pseudouridine synthase B n=1 Tax=Rubrobacte... 140 5e-32 UniRef50_B1CB51 Putative uncharacterized protein n=1 Tax=Anaerof... 140 7e-32 UniRef50_C5RBC4 Pseudouridylate synthase n=2 Tax=Lactobacillales... 140 8e-32 UniRef50_C1ZEI4 tRNA pseudouridine 55 synthase n=1 Tax=Planctomy... 139 1e-31 UniRef50_B9FM24 Putative uncharacterized protein n=1 Tax=Oryza s... 139 2e-31 UniRef50_UPI000050FC6C tRNA pseudouridine synthase B n=1 Tax=Bre... 139 2e-31 UniRef50_Q30WI7 tRNA pseudouridine synthase B n=4 Tax=Desulfovib... 139 2e-31 UniRef50_Q72ER4 tRNA pseudouridine synthase B n=10 Tax=Desulfovi... 137 4e-31 UniRef50_Q2SSF2 tRNA pseudouridine synthase B n=4 Tax=Mollicutes... 137 6e-31 UniRef50_A6C3H8 tRNA pseudouridine synthase B n=1 Tax=Planctomyc... 136 9e-31 UniRef50_D2R9Q7 tRNA pseudouridine synthase B n=1 Tax=Gardnerell... 135 2e-30 UniRef50_C5NXZ4 tRNA pseudouridine synthase B n=1 Tax=Gemella ha... 135 2e-30 UniRef50_B2KCA4 tRNA pseudouridine synthase B n=1 Tax=Elusimicro... 135 2e-30 UniRef50_C9LRE6 tRNA pseudouridine synthase B n=1 Tax=Dialister ... 134 4e-30 UniRef50_Q319E0 tRNA pseudouridine synthase B n=8 Tax=Prochloroc... 133 8e-30 UniRef50_C8NZL8 tRNA pseudouridine synthase B (TRNA pseudouridin... 133 9e-30 UniRef50_B0BXR2 tRNA pseudouridine synthase B n=16 Tax=Rickettsi... 133 1e-29 UniRef50_B3CTX3 tRNA pseudouridine 55 synthase n=2 Tax=Orientia ... 132 2e-29 UniRef50_Q2NIZ2 tRNA pseudouridine synthase B n=7 Tax=Acholeplas... 132 2e-29 UniRef50_B4U903 tRNA pseudouridine synthase B n=1 Tax=Hydrogenob... 132 2e-29 UniRef50_D2R7P9 tRNA pseudouridine synthase B n=1 Tax=Pirellula ... 132 2e-29 UniRef50_Q2GEU5 TRNA pseudouridine synthase B n=2 Tax=Neorickett... 131 3e-29 UniRef50_B5YEH8 tRNA pseudouridine synthase B n=2 Tax=Dictyoglom... 131 3e-29 UniRef50_C8PR21 tRNA pseudouridine synthase B n=1 Tax=Treponema ... 130 4e-29 UniRef50_Q3ABA1 tRNA pseudouridine synthase B n=1 Tax=Carboxydot... 130 5e-29 UniRef50_C3JA73 tRNA pseudouridine synthase B n=6 Tax=Bacteria R... 130 6e-29 UniRef50_A8RBN0 Putative uncharacterized protein n=2 Tax=unclass... 130 6e-29 UniRef50_UPI00016A95FF tRNA pseudouridine synthase B n=1 Tax=Bur... 130 7e-29 UniRef50_Q8CWM3 tRNA pseudouridine synthase B n=6 Tax=Cyanobacte... 130 9e-29 UniRef50_Q2NBZ4 TRNA pseudouridine synthase B n=1 Tax=Erythrobac... 129 2e-28 UniRef50_C6X4Q1 tRNA pseudouridine synthase B n=1 Tax=Flavobacte... 128 3e-28 UniRef50_C7M8Y8 tRNA pseudouridine synthase B n=1 Tax=Capnocytop... 128 3e-28 UniRef50_B6W932 Putative uncharacterized protein n=1 Tax=Anaeroc... 128 3e-28 UniRef50_D1BAB8 tRNA pseudouridine synthase B n=1 Tax=Thermanaer... 127 4e-28 UniRef50_D1BM63 tRNA pseudouridine synthase B n=3 Tax=Veillonell... 127 4e-28 UniRef50_UPI0000D546F1 tRNA pseudouridine synthase B n=1 Tax=Psy... 127 4e-28 >UniRef50_A1JIX1 tRNA pseudouridine synthase B n=327 Tax=Gammaproteobacteria RepID=TRUB_YERE8 Length = 329 Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/313 (72%), Positives = 260/313 (83%), Gaps = 2/313 (0%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M RPRRRGRDINGVLLLDKP G+SSND LQKVKR+++ANRAGHTGALDPLATGMLPICLG Sbjct: 1 MGRPRRRGRDINGVLLLDKPLGLSSNDVLQKVKRLFSANRAGHTGALDPLATGMLPICLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKFSQ+LLDSDKRYRV+ARLGQRTDTSDA+G ++ ER V + Q+ AALD+FRG + Sbjct: 61 EATKFSQFLLDSDKRYRVVARLGQRTDTSDAEGALISEREVNVTQAQMDAALDSFRGSSQ 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+PSMYSALK+QGK LYEYARQGIEV REAR ITVYELLFIR EGN+LELEIHCSKGTYI Sbjct: 121 QVPSMYSALKHQGKPLYEYARQGIEVEREARSITVYELLFIRWEGNDLELEIHCSKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD-IPAAELLDP 239 RTIIDDLGE LGCGAHV YLRRL V+ YP +RMVTLE L +VE A+ ++ P AE LD Sbjct: 181 RTIIDDLGELLGCGAHVSYLRRLQVATYPSDRMVTLEQLTAIVETAQAEERSPNAE-LDA 239 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 LL+PMDS ++P VNL + Y K G PV +G P EG+VR+TEGE FIG+G I + Sbjct: 240 LLLPMDSAVLNFPEVNLLPAVAAYVKQGQPVHVAGTPGEGMVRITEGEERNFIGIGTIAE 299 Query: 300 EGRVAPRRLVVEY 312 +GRVAP+RLVVE+ Sbjct: 300 DGRVAPKRLVVEH 312 >UniRef50_Q1LSL0 tRNA pseudouridine synthase B n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=TRUB_BAUCH Length = 317 Score = 327 bits (838), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 158/305 (51%), Positives = 210/305 (68%), Gaps = 2/305 (0%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 +ING++LLDK +G+SSN L KVKR++ +AGHTGALDPLA+GMLPICLGEATKFS+Y Sbjct: 10 HNINGIILLDKQEGLSSNYLLHKVKRLFRVQKAGHTGALDPLASGMLPICLGEATKFSKY 69 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 LLD+DKRY V A+LG++T+T DA G I+ RPVT + + ++ F GDI QIP M+S+ Sbjct: 70 LLDADKRYIVSAKLGEKTNTYDATGIIINTRPVTINQAMIEHIMEQFYGDIYQIPPMFSS 129 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +KYQG+ LY+YAR+GI +PR AR + +Y L + + +EL+IHCSKGTYIRTIIDD+G Sbjct: 130 IKYQGRALYKYARKGINIPRSARLVHIYNLQILDWDNTHIELQIHCSKGTYIRTIIDDIG 189 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 E LGCGAHV LRRLAV+ Y RM+TLE L+ + A +Q L+ LL+P+DS Sbjct: 190 ELLGCGAHVTMLRRLAVAHYHTARMITLESLQTAITLALRQTPNTLVQLNKLLLPIDSAV 249 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTE--GENGKFIGMGEIDDEGRVAPR 306 +++P + L S + G V GLVR+ E GE F G+GEI G + P+ Sbjct: 250 ANFPAIKLSKDSVARVRKGQMVAVDQCWQSGLVRMCENKGETTYFFGIGEITQPGVLKPK 309 Query: 307 RLVVE 311 RL+ E Sbjct: 310 RLLAE 314 >UniRef50_Q8K9H3 tRNA pseudouridine synthase B n=4 Tax=Buchnera aphidicola RepID=TRUB_BUCAP Length = 312 Score = 325 bits (834), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 156/303 (51%), Positives = 206/303 (67%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 + R++NG LLLDKP+GM+SN+ LQKVK I+ A +AG+ G LDPLATG+LPIC GEATKFS Sbjct: 5 KKRNVNGFLLLDKPKGMTSNNVLQKVKIIFKAKKAGYIGTLDPLATGILPICFGEATKFS 64 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMY 126 YL SDK Y VIARLG++T TSD+DG IV +RP+ F+ QL+ AL G + QIPSMY Sbjct: 65 NYLNASDKHYNVIARLGEKTSTSDSDGIIVRKRPILFTPIQLSLALKALTGSVNQIPSMY 124 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SA+KY+G LY+YARQGI V R R + +Y++ + + N +EL +HCSKGTYIRT+I+D Sbjct: 125 SAVKYKGIPLYKYARQGINVKRNIRCVFIYKIDLVDQKDNWIELNVHCSKGTYIRTLIED 184 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LGEKL CGAHVI LRRL + ++V L L L+ + I + +D LLMP+D+ Sbjct: 185 LGEKLFCGAHVIRLRRLKIGLLSYSKLVKLSFLENLLNEKNVVKINFFKKIDDLLMPVDT 244 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 P P + + + F+ G V S + GLVRV E +N FIG+G+I+ E + P Sbjct: 245 PVYFLPKIYISIEKLSVFRLGQKVNFSSSITNGLVRVFEKDNNTFIGLGKINSEKTLIPY 304 Query: 307 RLV 309 RLV Sbjct: 305 RLV 307 >UniRef50_Q1GXD4 tRNA pseudouridine synthase B n=4 Tax=Betaproteobacteria RepID=TRUB_METFK Length = 302 Score = 311 bits (796), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 150/305 (49%), Positives = 209/305 (68%), Gaps = 11/305 (3%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R R+I+GVLLLDKP G+SSN ALQ VKR+Y A +AGHTG+LDPLA+G+LPICLGEATK Sbjct: 4 KRVKRNIDGVLLLDKPLGISSNQALQMVKRLYQAAKAGHTGSLDPLASGLLPICLGEATK 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 FS +LLD+DK YR + LG T T D +G+I+ + PVT + +L A L GDI Q+P Sbjct: 64 FSHFLLDADKSYRALVTLGSTTTTGDVEGEIMTQAPVTVTQSELEAILQDMVGDILQVPP 123 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK++GK LY YAR+G+E+PR+ RP+T++ + R +G + E+ + CSKGTYIRT+ Sbjct: 124 MYSALKHEGKALYAYAREGVEIPRKPRPVTIHAIALERFDGKQFEMVVSCSKGTYIRTLA 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G +LGCGAH+ LRRL + + ++ VT+E L ++ QAE+ D +L+ + Sbjct: 184 EDIGSRLGCGAHLGGLRRLTTAHFNLKNAVTIEQLDQM-SQAER---------DAVLLQV 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 D+ D+P+V L S+ Y G V SG + GL R+ E G F+G+GE G +A Sbjct: 234 DAAIEDFPIVTLDADSAFYLLQGQEVWKSGLSISGLFRLYS-EQGAFLGLGEQTSRGSIA 292 Query: 305 PRRLV 309 PRRL+ Sbjct: 293 PRRLL 297 >UniRef50_Q89AF6 tRNA pseudouridine synthase B n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=TRUB_BUCBP Length = 302 Score = 307 bits (787), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 150/304 (49%), Positives = 208/304 (68%), Gaps = 9/304 (2%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 R I+G++L+DKP G+SS++ LQKVK I + GHTG LDPLATGMLP+C G ATKFSQ+ Sbjct: 6 RSIDGIILIDKPYGLSSHETLQKVKGILKIKKMGHTGTLDPLATGMLPMCCGRATKFSQF 65 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 L++ KRYRVIA+LGQ+T TSD++GQI+ RP+TF+ QL L +F G I+QIPSMYSA Sbjct: 66 LMNFKKRYRVIAKLGQKTSTSDSEGQIIHVRPITFTNLQLQKVLKSFHGKIKQIPSMYSA 125 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYEL--LFIRHEGNELELEIHCSKGTYIRTIIDD 186 +KY G LY+YARQGI + R+ R +YEL L ++ LEL+I CSKGTYIRT+I+D Sbjct: 126 IKYHGHALYKYARQGIVISRKVRDAIIYELKVLGYSYKHKYLELDIICSKGTYIRTLIED 185 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +GEKL CGAHVI LRRL V Y +M+ ++ L +LV+ +L+ +L+ +D+ Sbjct: 186 VGEKLNCGAHVISLRRLQVGNYTSFQMIDIKTLNKLVKY-------NINVLEHILLSVDN 238 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 S +P VN+ +NG V+T + VR+TEG N +FIG+G+I++ + Sbjct: 239 AISCFPEVNIVPNVIKNLQNGQKVKTHSGFINQFVRITEGINRRFIGIGKINNINELYSY 298 Query: 307 RLVV 310 RL++ Sbjct: 299 RLII 302 >UniRef50_A8PNK9 tRNA pseudouridine synthase B n=1 Tax=Rickettsiella grylli RepID=A8PNK9_9COXI Length = 309 Score = 298 bits (763), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 153/314 (48%), Positives = 214/314 (68%), Gaps = 17/314 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R + R I G+LLLDKP+GM+SN ALQKVK+++ A++ GHTG+LDPLATG+LP+CLG Sbjct: 1 MQALRSKKRAITGILLLDKPKGMTSNQALQKVKQLFLADKIGHTGSLDPLATGLLPLCLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFSQ+LL++DKRY V ARLG +T+T DA+G++++ P+ +S +L A L FRG I Sbjct: 61 EATKFSQFLLNADKRYVVSARLGIKTNTGDAEGEVIKSCPIADYSLNELEAILSHFRGSI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----LELEIHCS 175 Q P M+SALKY+G+ LY+ ARQGI V R R + ++ L + E NE L LEI CS Sbjct: 121 LQTPPMFSALKYKGQPLYKLARQGIVVERRPRTVKIHCLHLL--ESNEDKSVLSLEIKCS 178 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 KGTYIRT+I+D+GE LGCGA+V LRRL V+ Y ++MV+L+ L+ L + + Sbjct: 179 KGTYIRTLIEDIGESLGCGAYVQNLRRLGVANYCADQMVSLDELQALSQNERYEK----- 233 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMG 295 L+ +DS S++P+ + ++ Y G + P +GL+R+ EN +FIG+G Sbjct: 234 -----LLNLDSLLSEWPIFKVSQAAAYYLYCGRTLLLPNLPKQGLLRLCLKENDRFIGIG 288 Query: 296 EIDDEGRVAPRRLV 309 EI + GRV PRRL+ Sbjct: 289 EILENGRVMPRRLI 302 >UniRef50_B3PI98 tRNA pseudouridine synthase B n=5 Tax=Gammaproteobacteria RepID=B3PI98_CELJU Length = 319 Score = 296 bits (759), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 158/322 (49%), Positives = 210/322 (65%), Gaps = 18/322 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R+GR ++GVLLL KP GM+SN ALQ+ KR++ A +AGHTG+LDPLATG+LP+C GEATK Sbjct: 3 KRKGRPVDGVLLLHKPAGMTSNQALQRAKRLFFAEKAGHTGSLDPLATGVLPLCFGEATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIP 123 FSQ+LLD+DK YR RLG TDT DADG ++E R + QL +ALD FRG+I Q+P Sbjct: 63 FSQFLLDADKGYRTCIRLGITTDTCDADGDVLETRSAAAITRAQLDSALDAFRGNILQVP 122 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYE---LLFIRHEGNELELEIHCSKGTYI 180 MYSALK G+ LY+ ARQG+EV RE R +T++ L F E E+EL+I CSKGTYI Sbjct: 123 PMYSALKLNGQPLYKIARQGVEVEREPRAVTIHSLDVLAFRPGEVAEVELDIRCSKGTYI 182 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R+I +DLG LGCGAHV L R + ++ + LE L E+ + LD Sbjct: 183 RSIAEDLGRALGCGAHVKVLHRSLAGSFGEDQCIGLEQLEADYERG------GYDALDAH 236 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG----APLEGLVRVTEGENG----KFI 292 L+ D+P + P V+LP S+ YF+ GNPV + A +VRV E+ +F+ Sbjct: 237 LVSADAPVASLPAVDLPANSAYYFRQGNPVMDTKVYRIARQGDIVRVFCAESAQSPRQFL 296 Query: 293 GMGEIDDEGRVAPRRLVVEYPA 314 G+GEI D+GRVAP+R++ A Sbjct: 297 GLGEITDDGRVAPKRIIANRSA 318 >UniRef50_UPI0000E0F5A1 tRNA pseudouridine synthase B n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F5A1 Length = 331 Score = 296 bits (757), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 158/325 (48%), Positives = 215/325 (66%), Gaps = 19/325 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 RR+GR INGV LLDKP G SSN+ LQKV+ +Y A +AGHTGALDPLA+GMLPICLGEATK Sbjct: 4 RRKGRAINGVFLLDKPLGESSNNVLQKVRAMYGAAKAGHTGALDPLASGMLPICLGEATK 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 FSQ+LLD+DK Y V A LG RT TSDADG++V PVT + + + AA +F G +QIPS Sbjct: 64 FSQFLLDADKTYEVTATLGIRTTTSDADGEVVSTLPVTSTEDDIRAACLSFVGASKQIPS 123 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 M+SALK++GK LY YARQGIE+ R AR IT++ L +R EG EL++ +HCSKGTYIR+++ Sbjct: 124 MFSALKHEGKPLYWYARQGIEIDRPARDITIFALDILRIEGVELDMRVHCSKGTYIRSLV 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE-QQDIPAAELLDPLLMP 243 DD+G+ LGCGA+V L R V+ YP ++M++L+ L+ LV+ + +DPLL+P Sbjct: 184 DDIGQVLGCGAYVSRLHRSQVAGYPSDKMMSLDALQTLVDTHRIDKGSEHHPYIDPLLLP 243 Query: 244 MDSP--------ASD---------YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV-TE 285 MD P A+D P + +T + + V+ +G +V Sbjct: 244 MDIPLYALGSTVATDAQINGVKVGMPFIPAKMTPAQVDETVVDVKAMALSKDGFEQVKVY 303 Query: 286 GENGKFIGMGEIDDEGRVAPRRLVV 310 E+G + E+ D+G + P+R+VV Sbjct: 304 DESGNIYAVAELKDDGYLHPKRVVV 328 >UniRef50_D0L0S4 tRNA pseudouridine synthase B n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0S4_HALNC Length = 318 Score = 291 bits (745), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 158/322 (49%), Positives = 207/322 (64%), Gaps = 22/322 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSR RRRGR+ING+LLLDKP G+SSN ALQ+VK ++ A +AGHTG+LDP ATGMLP+C G Sbjct: 1 MSR-RRRGREINGILLLDKPIGLSSNQALQRVKHLFQAAKAGHTGSLDPEATGMLPLCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 AT+ S LLD+DK YRV RLG RT+T D +G ++EERPV +AEQ+ L FRG + Sbjct: 60 HATRVSGLLLDADKTYRVTGRLGLRTETGDMEGAVIEERPVPELTAEQIETYLAPFRGLV 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +Q+P MYSALK GK+LYE AR G V R+AR I Y + + +G + +L +H SKG Y Sbjct: 120 DQVPPMYSALKVNGKRLYELARAGEVVERKARSINFYRIELLNFDGQDFDLLVHSSKGAY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER-------------MVTLEHLRELVEQA 226 IRT+I+D+GE +GCGA V LRR+ V + E M TL+ L +L E Sbjct: 180 IRTLIEDIGEAVGCGAVVAKLRRIGVGPWLTEWPEAAGDVPAKSATMWTLDELIKLNESD 239 Query: 227 EQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEG 286 + I A ++P DS YPVV L S+ + ++G+PV AP G + G Sbjct: 240 AEMAIKHA------ILPTDSALERYPVVQLDADSAFHIRHGHPVFVPKAPQTGWFCIY-G 292 Query: 287 ENGKFIGMGEIDDEGRVAPRRL 308 + F+GMGE+ D+GRVAPRRL Sbjct: 293 PDDLFLGMGEVLDDGRVAPRRL 314 >UniRef50_A1WXU9 tRNA pseudouridine synthase B n=4 Tax=Gammaproteobacteria RepID=TRUB_HALHL Length = 304 Score = 284 bits (727), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 149/307 (48%), Positives = 196/307 (63%), Gaps = 9/307 (2%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 RR GR++ GVLL DKP G++SN ALQ+VKR++ A +AGHTG+LDPLATG+LPIC G+ATK Sbjct: 4 RRGGRNVTGVLLFDKPAGVTSNKALQQVKRLFGARKAGHTGSLDPLATGLLPICFGDATK 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIP 123 S +LLD+DKRY V +LG TDT DA+G + V E + L FRG I+Q+P Sbjct: 64 VSGFLLDADKRYVVTCKLGVATDTGDAEGTERDRAEVPALDEEAVERGLTGFRGPIDQLP 123 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 MYSA+K+QG++LY+ ARQG+EV RE R + +Y+L + G+ELEL +HCSKGTYIRT+ Sbjct: 124 PMYSAIKHQGQRLYDLARQGVEVEREPRRVEIYDLQLVAVRGDELELSVHCSKGTYIRTL 183 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 +D+ + LG HV LRRL + Y M T E L EQ E LD L+P Sbjct: 184 AEDIAQALGTVGHVCALRRLGLGPYQDPAMWTEEMLAARAEQGR-------EALDATLLP 236 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 MDS Y V L + + G PV AP EG +R+ + G F+GMG+ D+GR+ Sbjct: 237 MDSALQQYTGVELADDLAYFVVQGQPVFVPKAPSEGWLRLYD-RGGNFLGMGQALDDGRI 295 Query: 304 APRRLVV 310 P+RLV Sbjct: 296 GPKRLVA 302 >UniRef50_Q2BH44 TRNA pseudouridine synthase B n=1 Tax=Neptuniibacter caesariensis RepID=Q2BH44_9GAMM Length = 307 Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 147/303 (48%), Positives = 209/303 (68%), Gaps = 10/303 (3%) Query: 17 LDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRY 76 ++KP G+SSN ALQ+V+RIY+A +AGHTGALDPLATGMLPICLGEATKFSQ+LLDSDKRY Sbjct: 1 MNKPPGISSNSALQQVRRIYDAAKAGHTGALDPLATGMLPICLGEATKFSQHLLDSDKRY 60 Query: 77 RVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDT-FRGDIEQIPSMYSALKYQG 133 A+LG RTD+SDADG +VEE+PV + +++ A L + F G+IEQ+PSM+SALK+QG Sbjct: 61 ITTAKLGVRTDSSDADGAVVEEKPVPTDLTEDKIDAILQSEFSGEIEQVPSMFSALKHQG 120 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 + LY+ AR+GI+V + R +T++E+ +E++LE++CSKGTYIR+I++DLG LGC Sbjct: 121 QPLYKLARKGIQVEVKPRKVTIHEIKLTALRDDEIDLEVYCSKGTYIRSIVEDLGHILGC 180 Query: 194 GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ--AEQQDIPAAELLDPLLMPMDSPASDY 251 GAHV L RL V + +RM++L+ LRELV + E+Q LD LL+P + D Sbjct: 181 GAHVKMLHRLDVGAFTADRMMSLDELRELVPENTTEEQQKGIQIELDKLLLPAWAAVDDL 240 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV----TEGENGKFIGMGEIDDEGRVAPRR 307 P V L + +G V + L+R+ + + +F+G+ E+ E ++ P+R Sbjct: 241 PAVRLNDQQTSLIMHGQAVANANYAEGSLIRLFGTSLDSDAERFLGVAEV-VEQQLKPKR 299 Query: 308 LVV 310 L+ Sbjct: 300 LIC 302 >UniRef50_Q21H63 tRNA pseudouridine synthase B n=5 Tax=Gammaproteobacteria RepID=TRUB_SACD2 Length = 313 Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 149/319 (46%), Positives = 205/319 (64%), Gaps = 15/319 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +R GR I+GV+++DKP G SSN LQ+VKR++ AN+AGHTG+LDPLATG+LP+C G Sbjct: 1 MGNRKRPGRPISGVIVIDKPAGDSSNGVLQRVKRLFFANKAGHTGSLDPLATGVLPVCFG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 +ATKFSQ+LLDSDK Y R G+ TDT+D+DG+++E + + + A+ + GDI Sbjct: 61 DATKFSQFLLDSDKEYVSTFRFGEVTDTADSDGEVLESIDASKLTKADVLKAIKAYIGDI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYE---LLFIRHEGNELELEIHCSK 176 +Q+P MYSALK G+ LY+ ARQGIEV RE RP+TVYE L F E ++ + CSK Sbjct: 121 DQVPPMYSALKRNGQPLYKLARQGIEVEREPRPVTVYEFELLAFRPGAVAEADVRVFCSK 180 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTYIR++ D+G L G HV LRR + +++ +T+E L + E+ E+ AE+ Sbjct: 181 GTYIRSLASDIGADLELGGHVAKLRRTQAGPFTIDQSITIEELEQ--ERGER----LAEV 234 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG----LVRVTEGENGKFI 292 LD L+P D +D+P + L S+ YF G V S G VRV + +GKF Sbjct: 235 LDHHLLPTDIAVADFPSLELDDNSAFYFSRGQAVMDSRVYRLGDEGDKVRVFD-SSGKFY 293 Query: 293 GMGEIDDEGRVAPRRLVVE 311 G+ EI DEG VAP+RLV + Sbjct: 294 GVAEITDEGTVAPKRLVSQ 312 >UniRef50_A3WPV5 TRNA pseudouridine 5S synthase n=1 Tax=Idiomarina baltica OS145 RepID=A3WPV5_9GAMM Length = 319 Score = 270 bits (690), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 149/314 (47%), Positives = 204/314 (64%), Gaps = 17/314 (5%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 +RPR+ GR INGVLLLDKP+ M+SN A+Q VKR+Y A + GHTGALDPLATG+LP+CLGE Sbjct: 4 ARPRK-GRPINGVLLLDKPKEMTSNRAIQVVKRLYEAQKVGHTGALDPLATGLLPVCLGE 62 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQ 121 ATKFSQYLLD+DK YRV A+LG RT TSDA+G++VE+ PV S QL + F G+ Q Sbjct: 63 ATKFSQYLLDADKAYRVEAQLGVRTTTSDAEGEVVEQNPVDVSDTQLNDIIAQFTGEQAQ 122 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 PS+YSALKY+GK LY YAR+GI+VPR+ R I+V + + +G+ + L++ CSKGTYIR Sbjct: 123 TPSIYSALKYEGKPLYYYARRGIDVPRKTRTISVRAIELLHRDGDFVTLQVACSKGTYIR 182 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T++DD+G+ LGCGAHV LRR V+ + +LE L EQ + + A L Sbjct: 183 TLVDDMGQALGCGAHVRELRRTHVANLTDAQQWSLEAL----EQCDDEQRLAC------L 232 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPV--RTSGAPLEG----LVRVTEGENGKFIGMG 295 P+D+ + P + + +G PV RT G L + + FIG+ Sbjct: 233 EPVDTLLNGLPTQTISQAEARDVMHGQPVFNRTLDTQAVGDECRLCAKSTAGHSVFIGVV 292 Query: 296 EIDDEGRVAPRRLV 309 + +G++ P+R++ Sbjct: 293 VLRKDGKLWPKRVL 306 >UniRef50_Q1QSZ2 tRNA pseudouridine synthase B n=3 Tax=Proteobacteria RepID=TRUB_CHRSD Length = 307 Score = 270 bits (690), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 142/310 (45%), Positives = 195/310 (62%), Gaps = 12/310 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RRRG I+GVLLLDK G+SSN ALQ+V+R+Y+A +AGHTG LDP+ATG+LP+C G Sbjct: 1 MAR-RRRGTPIDGVLLLDKAPGVSSNRALQQVRRLYDAQKAGHTGTLDPMATGLLPVCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 EATKFS YLLD+DK YR RLG+ TDT DA+G ++E V + AAL FRG++ Sbjct: 60 EATKFSAYLLDADKTYRTWVRLGEVTDTGDAEGTVIEHHSVPALDERDIEAALAGFRGEV 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 EQ+P MYSALK+QG+ LYE AR+G V R AR +TVY++ + E ELE+ CSKGTY Sbjct: 120 EQVPPMYSALKHQGRPLYELAREGKHVERAARRVTVYDMRLLSCEAEGFELEVRCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ +D+G LGCGAH+ LRRL + + M L +D+ AA + Sbjct: 180 IRTLAEDIGHALGCGAHITSLRRLRSGPFEADAMHAFSAL---------EDLDAAS-REA 229 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+P+D+ + P + + ++S +G + A L + F+G+ + + Sbjct: 230 RLLPVDTMLTHLPSLEVAASASRRLLHGQRAQIDTAGLAAQSTARLYRDAAFLGLVTVTE 289 Query: 300 EGRVAPRRLV 309 G VAPRRL+ Sbjct: 290 CGEVAPRRLL 299 >UniRef50_Q057K1 TRNA pseudouridine 55 synthetase n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057K1_BUCCC Length = 311 Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 127/304 (41%), Positives = 196/304 (64%), Gaps = 4/304 (1%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKF 65 + ++ NG+LLLDKP+G+SSN LQ++K+I+ A +AG+TG+LDP+ATGMLPI G ATKF Sbjct: 4 QNNKNYNGILLLDKPKGISSNGILQQIKKIFLAKKAGYTGSLDPMATGMLPILFGNATKF 63 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 S+YL DS K+Y VIA+LG+ T T D G+ ++ + + + + L++F G+I Q+P M Sbjct: 64 SKYLTDSAKKYHVIAKLGETTSTGDLSGKKLKIKSININTNDIYKILNSFIGEIYQVPPM 123 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA+KY G LY+YAR GI VPR+ R + +Y++ FI+ LE + CSKGTYIR++++ Sbjct: 124 FSAIKYNGIPLYKYARLGILVPRKKRKLFIYKINFIQFVNPFLEFTVICSKGTYIRSLVN 183 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL---LDPLLM 242 D+G KL CG HVI+LRRL + Y ++VTL +L +E + I L L+ L+ Sbjct: 184 DIGNKLFCGGHVIFLRRLYIKPYNSSKLVTLSNL-HFIENKNIEQIHKFYLFNMLNTFLL 242 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 P+ S YP++ + + F+ + + GLV+V +N F+G+G+I+ G Sbjct: 243 PVSSFFFKYPIIKILHSDINNFQKKIKIALNFFSTIGLVQVITKKNNIFLGIGKINKFGI 302 Query: 303 VAPR 306 + P+ Sbjct: 303 LTPK 306 >UniRef50_Q2SML1 tRNA pseudouridine synthase B n=3 Tax=Gammaproteobacteria RepID=TRUB_HAHCH Length = 311 Score = 265 bits (678), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 149/311 (47%), Positives = 196/311 (63%), Gaps = 10/311 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R R++G +NGV+++DKPQ +SN LQKVK NA +AGHTGALDPLATG+LP+C G Sbjct: 1 MAR-RKKGAPLNGVMVVDKPQDWTSNAVLQKVKYALNAQKAGHTGALDPLATGVLPLCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 EATKFSQ LLDSDK Y A LG+ T TSDADG I+ E PV S L + L FRG++ Sbjct: 60 EATKFSQLLLDSDKEYVTCAYLGRTTTTSDADGDIIAESPVPGLSVSDLESVLGKFRGNL 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +QIPSMYSALK++G LY+ ARQGIEV REAR I ++EL + + L L + CSKGTY Sbjct: 120 KQIPSMYSALKHKGTPLYKLARQGIEVEREARDIIIHELELLDYTPPFLRLRVLCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD-IPAAELLD 238 IR +++D+G+ LGCGAHV+ LRR + + V E V A++ AAE Sbjct: 180 IRNLVEDIGQVLGCGAHVMELRRTRCGPFSLADSV------EFVSFADESGRQAAAEKYK 233 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID 298 L+P+DS + + L ++ G V+ S EG VR+ FIG+GE+ Sbjct: 234 ERLLPIDSSVQQFSEIILDEANTGSIIQGQTVKISPLSSEGKVRLYTNRR-HFIGLGEVM 292 Query: 299 DEGRVAPRRLV 309 +G V P RL+ Sbjct: 293 SDGTVKPVRLL 303 >UniRef50_Q6F7I5 tRNA pseudouridine synthase B n=20 Tax=Proteobacteria RepID=TRUB_ACIAD Length = 318 Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/302 (46%), Positives = 191/302 (63%), Gaps = 14/302 (4%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 R ++GV LL+KP G+SSN LQKV+ ++ A +AGHTGALDPLATG+LPICLGEATKFS Y Sbjct: 28 RPVSGVFLLNKPLGLSSNGVLQKVRWLFRAQKAGHTGALDPLATGLLPICLGEATKFSHY 87 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 LLDS KRY+ + +LGQ T T D +G++V+ R V + + L LD FRGDI+Q+P MYS Sbjct: 88 LLDSTKRYQTVVKLGQVTTTGDVEGKVVQSRSVPPLTRDMLELVLDGFRGDIQQVPPMYS 147 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 ALK G+ LYE ARQGIE+ REARP+T++ L + + L L++ CSKGTYIR + +D+ Sbjct: 148 ALKRDGRPLYELARQGIEIEREARPVTIHALKLVDFDTESLTLDVTCSKGTYIRVLGEDI 207 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 GE LGCG H+ L R+ + + TLE+L +L E D LL+ +P Sbjct: 208 GEALGCGGHLTALHRVQTGHFELVPEYTLEYLEQLNETER----------DMLLLAPYAP 257 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P V +P YF NG + S + + V E + +G+ EI D+ R+ P+R Sbjct: 258 VDYLPQVQIPEGRLKYFCNG---QESNIDHDAVPEVLVFEGERCLGLAEITDKKRLVPKR 314 Query: 308 LV 309 L+ Sbjct: 315 LL 316 >UniRef50_C4ZJR7 tRNA pseudouridine synthase B n=4 Tax=Betaproteobacteria RepID=C4ZJR7_THASP Length = 328 Score = 265 bits (676), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 141/316 (44%), Positives = 194/316 (61%), Gaps = 20/316 (6%) Query: 3 RPRRRG--------RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGM 54 RP+R+G R+++GVLLLDKPQGMSSN ALQ +R+ A +AGHTG LDP+A+G+ Sbjct: 15 RPKRKGQPQRRIVRREVDGVLLLDKPQGMSSNGALQTARRLLAAAKAGHTGTLDPMASGL 74 Query: 55 LPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDT 114 LP+ GEATKF+Q LLD+DK Y + RLG TD+ DA+G+++ RPV L A L+ Sbjct: 75 LPLTFGEATKFAQMLLDADKTYEAVVRLGVDTDSGDAEGKVLATRPVAVDRAALEAVLER 134 Query: 115 FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHC 174 FRG+IEQ+P MYSALK GK LYEYAR GIE+ R AR + ++ L + G + +HC Sbjct: 135 FRGEIEQVPPMYSALKRDGKALYEYARAGIELERAARRVVIHALELLDFAGERFTIRVHC 194 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKGTYIR++ D+G LGCGAH+ LRR A+ + + +TLE L E Sbjct: 195 SKGTYIRSLAMDIGAALGCGAHLAALRRTAIGAFDLSGALTLEALEAAGEGGR------- 247 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGM 294 D LL P+D+ + +PV+ L ++ G + +GA VR G F+G+ Sbjct: 248 ---DALLAPVDALVAGFPVLQLDAEAARGLLQGRTLALAGAQPGAKVRAY--GPGGFLGL 302 Query: 295 GEIDDEGRVAPRRLVV 310 + D+GR+A RRL+ Sbjct: 303 AQWQDDGRLAARRLIA 318 >UniRef50_Q493T5 tRNA pseudouridine synthase B n=2 Tax=Candidatus Blochmannia RepID=TRUB_BLOPB Length = 260 Score = 259 bits (663), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 124/239 (51%), Positives = 164/239 (68%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 R RDING+LLLDKP+G+SS L K+K+++NA + GHTG LDPLATGMLP+C G+ATK + Sbjct: 8 RNRDINGILLLDKPKGISSGLFLNKIKKLFNAKKIGHTGTLDPLATGMLPVCFGKATKLA 67 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMY 126 +YLL SDKRY+V A+LG TDT D+DG I+ PV + L L++F G QIP M+ Sbjct: 68 KYLLHSDKRYKVSAQLGVSTDTFDSDGTIISVSPVQSNDYILEQCLESFIGIRNQIPPMF 127 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 S+LKY+G LY+YAR+GI PR+ R I +Y L I+ N +EL++HCS GTYIR+I++D Sbjct: 128 SSLKYRGVPLYKYARKGIYFPRKPRSIHIYNLSLIKKTENIIELDVHCSTGTYIRSIVND 187 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 +GE LGCGAHVI LRRL+V +Y M+ L + D+ LD L PM+ Sbjct: 188 IGEYLGCGAHVIELRRLSVGQYISSSMINPATLEAIFYNDSFDDVQVFCKLDAFLTPMN 246 >UniRef50_C5AH02 TRNA pseudouridine synthase B n=3 Tax=Burkholderiales RepID=C5AH02_BURGB Length = 318 Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 148/315 (46%), Positives = 193/315 (61%), Gaps = 19/315 (6%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 RPR R ++GVLLLDKP G+SSNDAL + KR+Y A +AGHTG LDPLA+G+LP+C GEA Sbjct: 10 RPRVPRRLLDGVLLLDKPVGLSSNDALIRAKRLYLAKKAGHTGTLDPLASGLLPLCFGEA 69 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 TKFSQ LL++DK Y RLG RT T DA+G+ +E R V + A L F G+I Q+ Sbjct: 70 TKFSQDLLEADKTYEATMRLGIRTTTGDAEGEAIETREVRVGCAAVEAVLPRFLGEIVQV 129 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALK GK LYEYAR G V RE R +T++ L + E + + CSKGTY+RT Sbjct: 130 PPMYSALKRDGKPLYEYARAGQTVEREGRNVTIHALELLACELPNVTFRVTCSKGTYVRT 189 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +D+GE LGCGAH++ LRR V +E VTL+ L D AAE D L Sbjct: 190 LAEDIGEALGCGAHLVALRRTGVGALTLEHAVTLDAL---------SDAQAAE-RDGWLQ 239 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL-------VRVTEGENGKFIGMG 295 P+D+ S +P V L + F++G +R + AP G VRV + G+ +G+ Sbjct: 240 PVDALLSTFPPVRLDAEEAKRFRHGQRLRLASAPETGAHDEAGARVRVYDA-AGQLLGVA 298 Query: 296 EIDDEGRVAPRRLVV 310 + D G +AP RLVV Sbjct: 299 RLLD-GVLAPERLVV 312 >UniRef50_C1D8X0 TruB n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8X0_LARHH Length = 315 Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 137/318 (43%), Positives = 191/318 (60%), Gaps = 20/318 (6%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +PR R ++GVLLLDKP GM+SN ALQ+ + ++ A + GHTG LDPLATG+LP+C GEA Sbjct: 5 KPRIERRPLDGVLLLDKPCGMTSNTALQRARWMFRAQKGGHTGVLDPLATGLLPLCFGEA 64 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 TKFS +LLD+DK YR R G + T D +G+I P F EQL A + F G I+Q+ Sbjct: 65 TKFSAFLLDADKGYRATLRFGAVSSTLDREGEITPVAPPAFDREQLDAVIRDFTGVIDQV 124 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALK+QGK LYEYAR G+E+ R+ R +T++ + + +G +++ CSKGTYIRT Sbjct: 125 PPMYSALKFQGKALYEYARAGVEIERKVRQVTIHRIDLLAFDGETAVMDVACSKGTYIRT 184 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+GE+LGCGA++ LRR + + +E+ VTLE L L E D LL+ Sbjct: 185 LAADIGERLGCGAYLTDLRRTTTAGFRLEQTVTLEQLEALDESGR----------DGLLL 234 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPV---------RTSGAPLEGLVRVTEGENGKFIG 293 P D S P V + +G P R A +R+ E+G+F G Sbjct: 235 PADILVSHLPKVVVDEADFQRMTHGQPAAVDPEKAVQRDEKAATISRLRLY-AEDGRFFG 293 Query: 294 MGEIDDEGRVAPRRLVVE 311 +GEI +GR+ P R++ + Sbjct: 294 LGEIRADGRLWPDRMLAK 311 >UniRef50_A5CXX8 tRNA pseudouridine synthase B n=3 Tax=Bacteria RepID=A5CXX8_VESOH Length = 302 Score = 257 bits (657), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 142/315 (45%), Positives = 203/315 (64%), Gaps = 18/315 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R +GR ING++LLDK G+SSN ALQKVKR++ A +AGHTGALD A+G+LPICLG Sbjct: 1 MLRRNPKGRSINGIVLLDKDIGLSSNAALQKVKRLFFAKKAGHTGALDFSASGILPICLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 +ATK +Q+LL+ DKRY V +LGQ +DT D +G I++ +P S ++A +F+G+I Sbjct: 61 QATKIAQFLLEDDKRYFVRGKLGQISDTGDCEGSIIKTQPFEHLSDSEIAKVTASFKGNI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 QIP MYSALK G+ LY+ AR+GIEV RE+R +T+Y+++++ ++ L LE+ CSKGTY Sbjct: 121 FQIPPMYSALKRDGQPLYKLARKGIEVERESRLVTIYKIIYLGYKNGILSLEVTCSKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE---QAEQQDIPAAEL 236 IRT+I+D+GEKL CGAHVI LRR + + + +T L L QA + I A+E Sbjct: 181 IRTLIEDIGEKLSCGAHVIELRRTGFAHIDIRQTLTFSELEILASNDYQALDEKILASE- 239 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVT-EGENGKFIGMG 295 D LL D V L S+ K G ++T +GL++V E +F+G+G Sbjct: 240 -DMLLGLED--------VYLSKVQSLDIKFGREIQTDK---QGLLKVKLFNEKKQFLGIG 287 Query: 296 EIDDEGRVAPRRLVV 310 + G + P++L + Sbjct: 288 QCQGNGIILPKKLFI 302 >UniRef50_Q1MZS4 TRNA pseudouridine synthase B n=1 Tax=Bermanella marisrubri RepID=Q1MZS4_9GAMM Length = 327 Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 140/321 (43%), Positives = 204/321 (63%), Gaps = 26/321 (8%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 RR+GRDI+G++++DKP GM+SN LQ+VKR+Y A +AGHTGALDP+ATG+LPICLGEATK Sbjct: 4 RRKGRDISGIIVIDKPSGMTSNGVLQQVKRLYGAAKAGHTGALDPIATGVLPICLGEATK 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIP 123 FSQ LL+SDKRY +LG+ DT+D +G+I++ V + +++ +AL FRG+I Q+P Sbjct: 64 FSQRLLESDKRYITKVQLGESRDTADIEGEILDRADVPDLTQDKIESALTQFRGEITQVP 123 Query: 124 SMYSALKYQGKKLYEYARQG--IEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 MYSALK+QGKKLYE AR G ++ +AR +++ +L + + LEL++ C+KGTYIR Sbjct: 124 PMYSALKHQGKKLYELARAGEDFDIQSKARQVSILKLELLDFGDDWLELDVTCTKGTYIR 183 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 ++ +D+ + LG V LRRL Y + M LE L E+ +++E D LD LL Sbjct: 184 SLAEDVAKALGTLGFVAVLRRLGAGPYHADMMHELEQLVEIKDKSE--DFSN---LDQLL 238 Query: 242 MPMDSPASDYPVVNLPLT-------------SSVYFKNGNPVRTSGAPLEGLVRVTEGEN 288 MP + D P+V L L +S FK G P A + +R+ + Sbjct: 239 MPTQTALPDVPLVELTLKQAHDLQFGRAIELNSQQFKAGEP-----AIAQVQLRLRYAQW 293 Query: 289 GKFIGMGEIDDEGRVAPRRLV 309 +G+GE+ +G +AP+RL+ Sbjct: 294 DLLLGIGELSAQGVIAPKRLL 314 >UniRef50_Q5X1C5 tRNA pseudouridine synthase B n=4 Tax=Legionella pneumophila RepID=TRUB_LEGPA Length = 303 Score = 250 bits (638), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 129/300 (43%), Positives = 186/300 (62%), Gaps = 11/300 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+G+LLL+KPQGM+SN ALQK K ++ A +AGHTG+LDPLATGMLP+C GEATK QYLL Sbjct: 10 IDGILLLNKPQGMTSNAALQKAKHLFGAKKAGHTGSLDPLATGMLPLCFGEATKICQYLL 69 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 ++DK Y I RLG +T+T+D G+++ T S E++ A L+ ++G I+QIPSM+SAL Sbjct: 70 NADKSYETIGRLGSKTNTADCTGEVIFCIENYTVSHEEMIATLEKYKGKIKQIPSMFSAL 129 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K++G LY AR+GIE+ R+AR I + +L + +G L + CSKGTYIR +++D+G+ Sbjct: 130 KHKGTPLYRLAREGIEIERKARDIVISQLKLEQFDGECFTLTVSCSKGTYIRNLVEDIGD 189 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 L GAH+ L RL + + RM TL+ L QD+P ++ L L+P+D Sbjct: 190 TLKAGAHMTKLHRLYTAGFENNRMYTLDEL---------QDMPLSQRL-ACLIPIDQAIQ 239 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 V L + + G + +EG GE +FIG+G+ G + +RLV Sbjct: 240 HLTPVILSDSEVTAIRQGKVISNKTGAVEGEDLRLYGEQSQFIGIGQALIHGDIKAKRLV 299 >UniRef50_A4G7S5 tRNA pseudouridine synthase B (TRNA pseudouridine 55 synthase) (Psi55 synthase) (TRNA-uridine isomerase) (TRNA pseudouridylate synthase) n=5 Tax=Burkholderiales RepID=A4G7S5_HERAR Length = 314 Score = 247 bits (630), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 135/307 (43%), Positives = 185/307 (60%), Gaps = 21/307 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVLLLDK G+SSNDAL K K + NA +AGHTG LDP ATG+LP+C GEATKF+Q LL Sbjct: 13 VHGVLLLDKQAGVSSNDALIKAKWLLNALKAGHTGTLDPFATGLLPLCFGEATKFAQDLL 72 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D+DK Y + LG T+T D +G ++ V S +Q+ A L FRGDIEQ+P MYSALK Sbjct: 73 DADKTYETVVHLGVTTNTGDTEGDVIATHAVDISRQQIDAVLAQFRGDIEQVPPMYSALK 132 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GK LYEYAR GI + REARP+T++ L F+ + L L + CSKGTYIR + +D+G Sbjct: 133 RDGKPLYEYARAGITLEREARPVTIHLLEFVDFQAPFLTLRVRCSKGTYIRVLGEDIGAA 192 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGAH+ LRR+ V + + +T+E EL + I A +D LL + Sbjct: 193 LGCGAHLNALRRIQVGDLLIAQAITIE---ELTAKDADARIAALASVDALL-------TS 242 Query: 251 YPVVNLPLTSSVYFKNG--------NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 +P + L + F +G N V G +G +R+ +G+ +G G + + Sbjct: 243 FPALRLSEELAKRFLHGQRLALGKENIVLPEG---QGRMRIYRESDGQLLGTGLMQEYSI 299 Query: 303 VAPRRLV 309 +AP RL+ Sbjct: 300 LAPERLI 306 >UniRef50_UPI0000E87C37 tRNA pseudouridine synthase B n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C37 Length = 300 Score = 238 bits (608), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 132/308 (42%), Positives = 194/308 (62%), Gaps = 13/308 (4%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +P+R DI+GV+L+DKP G SSN AL K+K I++ +AGHTG LDPLATG+LPICLGEA Sbjct: 2 QPKRIKLDISGVILVDKPLGYSSNQALSKIKWIFSPKKAGHTGTLDPLATGLLPICLGEA 61 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA-EQLAAALDTFRGDIEQ 121 TKFS +LL+SDK Y +LG R++T D++G IV+ F A +++ L F G EQ Sbjct: 62 TKFSSFLLESDKTYEASIKLGFRSNTGDSEGVIVDLNVQHFPALKEIKETLKQFSGMQEQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 P MYSALK++GK LYEYAR+G E+ R+ R I + L I + N L++ + CSKGTYIR Sbjct: 122 TPPMYSALKFKGKPLYEYARKGEEIERKKRSINIVSLDLIDYSDNVLKITVECSKGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G+KL G ++I LRR A+ VE+ TL +++E +++ E D L+ Sbjct: 182 TLASDIGDKLNTGGYLIALRRTAIGSVNVEQAKTL----DMIEASDK------EARDALI 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 P+D + ++L ++ K+G + G EG+ R+ ++ F+G+G +D G Sbjct: 232 FPIDEFLNYLDDISLVPSAEEAIKDGKTLLFKGMK-EGIYRLYN-KDKFFLGLGTLDRHG 289 Query: 302 RVAPRRLV 309 + RRL+ Sbjct: 290 YLKVRRLL 297 >UniRef50_A1KUJ6 tRNA pseudouridine synthase B n=5 Tax=Neisseriaceae RepID=A1KUJ6_NEIMF Length = 319 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 126/301 (41%), Positives = 180/301 (59%), Gaps = 12/301 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+ + + R +NGVLLLDKP+G+SSN ALQK +R+++A +AGHTG LDPLATG+LP+C G Sbjct: 10 MNTGKPQKRAVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFG 69 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKF+QYLLD+DK Y +LG+ + T DA+G+I+ S + A G+I Sbjct: 70 EATKFAQYLLDADKAYTATLKLGEASSTGDAEGEIIATARADISLAEFQTACQALTGNIR 129 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+P M+SALK++GK LYEYAR+GI + R+ R ITVY + + + + + CSKGTYI Sbjct: 130 QVPPMFSALKHEGKPLYEYARKGIVIERKPRDITVYAIDIAEFDAPKAVISVRCSKGTYI 189 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT+ +D+ + +G AH+ LRR + + + + TLE L L E D L Sbjct: 190 RTLSEDIAKHIGTFAHLTALRRTETAGFTIAQSHTLEALANLNETER----------DSL 239 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGN-PVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+P D + +P L + + G P P + VRV ENG+F+G+ E Sbjct: 240 LLPCDVLVAHFPQTVLNDYAVHMLQCGQRPRFEEDLPSDTPVRVYT-ENGRFVGLAEYQK 298 Query: 300 E 300 E Sbjct: 299 E 299 >UniRef50_Q2Y7W4 tRNA pseudouridine synthase B n=3 Tax=Nitrosomonadaceae RepID=TRUB_NITMU Length = 313 Score = 236 bits (602), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 129/312 (41%), Positives = 193/312 (61%), Gaps = 22/312 (7%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 R I+GVLLLDK G+SSN ALQ KRI++A++AGHTG LDP+ATG+LPIC GEATKFS Sbjct: 7 RHISGVLLLDKASGLSSNQALQTAKRIFSAHKAGHTGTLDPMATGLLPICFGEATKFSSA 66 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQI-----VEERPVTFSAEQLAAALDTFRGDIEQIP 123 LL +DK Y + RLG + T DA+G+I +E + V + E++ A +F G I Q+P Sbjct: 67 LLGADKTYEAVLRLGYMSTTGDAEGEISIAAGMESQYVDLTREKIEAVRKSFIGVITQVP 126 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 MYSA+K++GK +Y +AR G+E+ R+ R IT+++L ++GNE+ + + C GTYIRT+ Sbjct: 127 PMYSAIKHRGKPMYTFARAGVEIERQPRAITIHDLSIEAYQGNEMRIRVTCGSGTYIRTL 186 Query: 184 IDDLGEKLGC-GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 +DLG LGC GA++ LRR A+ + + + TL L + +P ++ D L+ Sbjct: 187 AEDLGHALGCGGAYLTALRRSALGGFDLPQAYTLTGL---------EAMPPSQ-RDSCLL 236 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL-----VRVTEGENGKFIGMGEI 297 P DS P V + +++ G + + E L VR+ + +F+G+GEI Sbjct: 237 PADSLLRSLPPVVVDSAAALSLLQGRAIPGTHPAGESLLPGRQVRLYDKAQ-RFLGLGEI 295 Query: 298 DDEGRVAPRRLV 309 EG ++P+RL+ Sbjct: 296 STEGYISPKRLI 307 >UniRef50_B9ZLN1 tRNA pseudouridine synthase B n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZLN1_9GAMM Length = 319 Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 137/329 (41%), Positives = 192/329 (58%), Gaps = 26/329 (7%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RR +++G+LLLDKP+G SS L +VK + A +AGHTGALDP ATG+LP+C G Sbjct: 1 MARARR---EVDGILLLDKPRGPSSTQVLGRVKYLLQARKAGHTGALDPRATGLLPLCFG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 +ATK S +LLD+DK Y A+LG TD++D DG I+ E PV E+L A F G Sbjct: 58 QATKVSGWLLDADKHYVAEAQLGVETDSADLDGAIIREAPVPAIEPERLRALEQQFSGAQ 117 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 EQ+P M SALK+ G++LYE AR+G+EV R RP+ ++ L L +++ CSKGTY Sbjct: 118 EQVPPMVSALKHDGQRLYELARRGVEVERPPRPVQIHALSIEAIAPERLRIDVRCSKGTY 177 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R+++ D+G LGCGA V LRR+ + MVT+E + E I A Sbjct: 178 VRSLVVDIGHALGCGAAVDSLRRIGHGPFEAAAMVTMEQVEAAFEAGGAAAIEA------ 231 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVR----------TSGAPLEG-----LVRVT 284 +L ++ +P V+L +S ++G+P T GAP+E LVRV Sbjct: 232 MLQAPETALGHWPSVSLNAQASAAMRHGHPADPEAIESRTPGTEGAPVEAESGWPLVRVY 291 Query: 285 EGENGKFIGMGEIDDEGRVAPRRLVVEYP 313 + E G F+ +G + +GRV PRRL V P Sbjct: 292 DAEGG-FLAVGAREPDGRVRPRRLFVPAP 319 >UniRef50_B4RMB1 tRNA pseudouridine synthase B n=20 Tax=Betaproteobacteria RepID=TRUB_NEIG2 Length = 306 Score = 233 bits (593), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 124/293 (42%), Positives = 174/293 (59%), Gaps = 12/293 (4%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 R +NGVLLLDKP+G+SSN ALQK +R+++A +AGHTG LDPLATG+LP+C GEA KF+QY Sbjct: 8 RPVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEAAKFAQY 67 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 LLD+DK Y +LG+ + T DA+G+I+ S + A G+I Q+P M+SA Sbjct: 68 LLDADKAYTATLKLGEASSTGDAEGEIIAAARADISLAEFQTACQALTGNIRQVPPMFSA 127 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK++GK LYEYAR+GI + R+ R ITVY + + + + + CSKGTYIRT+ + + Sbjct: 128 LKHEGKPLYEYARKGIVIERKPRDITVYSIDIAEFDAPKAVISVRCSKGTYIRTLSEGIA 187 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 + +G AH+ LRR + + + + TLE L L E D LL+P D Sbjct: 188 KHIGTFAHLTALRRTETAGFTIAQSHTLEALANLDETER----------DNLLLPCDVLV 237 Query: 249 SDYPVVNLPLTSSVYFKNGN-PVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 S +P L + + G P P + VRV ENG+F+G+ E E Sbjct: 238 SHFPQTVLNDYAVHMLQCGQRPRFEEDLPSDTPVRVYT-ENGRFVGLAEYQKE 289 >UniRef50_B1XV87 tRNA pseudouridine synthase B n=2 Tax=Polynucleobacter necessarius RepID=B1XV87_POLNS Length = 303 Score = 231 bits (589), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 129/307 (42%), Positives = 182/307 (59%), Gaps = 20/307 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+GV+LLDKP GMSS DA+ VK +NA++AGHTG LDP+ATG+LPICLGEATK+SQ LL Sbjct: 5 IDGVVLLDKPAGMSSQDAVTAVKHAFNADKAGHTGTLDPMATGLLPICLGEATKYSQDLL 64 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAE-----QLAAALDTFRGDIEQIPS 124 ++DK Y + G RTDT DA+GQI+EE P+ TF+ + L A L F G I Q+P Sbjct: 65 EADKTYIAQVKFGARTDTGDAEGQIIEELPLPTFANDAEIKIALDALLPKFAGPISQVPP 124 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK GK LYEYAR G+E+ R R I ++ + + E LE+ CSKGTYIR + Sbjct: 125 MYSALKRDGKPLYEYARAGVELERIPRDIVIHSIRWTNINWPEATLEVSCSKGTYIRVLA 184 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G LGCGAH++ LRR V +E+ +E ++ ++ + ++P+ Sbjct: 185 EDIGNALGCGAHLVGLRRTEVGHLTLEQSFKIESIQNGLQNSAD-----------YILPV 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENG--KFIGMGEIDDEGR 302 D+ P + + + + G V + +E LVR+ FIG + G Sbjct: 234 DALLQTLPHLTVDEQQAKRLEMGQRVPLNLPSIEALVRIYRATAAPHNFIGTADW-RSGV 292 Query: 303 VAPRRLV 309 + P+RL+ Sbjct: 293 LHPKRLI 299 >UniRef50_Q31GK3 tRNA pseudouridine synthase B n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=TRUB_THICR Length = 303 Score = 230 bits (587), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 130/306 (42%), Positives = 180/306 (58%), Gaps = 18/306 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +++ + I+G++LL+KP+G++SN LQ+V+R+YNA +AGHTGALDP ATG+LPICLGEATK Sbjct: 3 KKQWQKIDGIVLLNKPEGVTSNGLLQQVRRVYNAKKAGHTGALDPFATGLLPICLGEATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIP 123 S LLDSDKRY +LG TD+ D DG ++ V S L F GD+ Q+P Sbjct: 63 ISGLLLDSDKRYIATLQLGLETDSGDKDGNPLKTIAVPALSKAMLETVFSQFEGDVMQVP 122 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 MYSALK+QGK LYEYAR+GI + R ARPI +YEL I E + E+ CSKGTY+RT+ Sbjct: 123 PMYSALKHQGKPLYEYARKGIHIERAARPIHIYELKLIDFENTVVRFEVLCSKGTYVRTL 182 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 +D+ + LG H+ L R + M TLE + EL + D L P Sbjct: 183 GEDIAKALGTVGHLTGLHRTQTGALTGDEMATLEEI-ELNK-------------DAYLQP 228 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR- 302 +D P ++L + +G + P LVR + + +FIG+GE E + Sbjct: 229 LDLPLKHLQAIHLNAKDTDKILHGGKLAVE-EPETLLVRFYDPQQ-RFIGVGEWQQEKQL 286 Query: 303 VAPRRL 308 + P+RL Sbjct: 287 LKPKRL 292 >UniRef50_Q8D2X8 tRNA pseudouridine synthase B n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=TRUB_WIGBR Length = 327 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 185/302 (61%), Gaps = 6/302 (1%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 R+ING+LLLDKP G+SSN LQK+K+++ A +AG+ G LDP+A+GMLPI G+ATKFS Y Sbjct: 30 RNINGILLLDKPIGLSSNLILQKIKKLFKAKKAGYIGTLDPIASGMLPIFFGDATKFSDY 89 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 LL+++K Y++ A+LG++T+T D+ G+I+ RP+ + L F+G+I Q P M+S Sbjct: 90 LLNTNKWYKIKAKLGEKTNTLDSFGKIICIRPILNIKKLNIEKILSEFQGEIYQKPPMFS 149 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 +LK+ GK LY+YARQGI +PRE R + V+ + + L I CSKGTY+R+I+DD+ Sbjct: 150 SLKHLGKPLYKYARQGIYIPREKRKVYVHYIKLLSFSKKYFSLTIKCSKGTYVRSIVDDI 209 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 GEKL CGAH++ LRR + Y M+ L + ++ + LD L+P++S Sbjct: 210 GEKLFCGAHIVKLRRTKLFNYKESHMIDSNKLYNI-----KKKFNDLKKLDECLLPIESI 264 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P++ + +NG + L ++ + KF+G+ +I+ GR + Sbjct: 265 FKKLPIIVVNDDIINRLRNGIKLNFWKIKKNNLFKIISKDTKKFVGIIDINKYGRANSIK 324 Query: 308 LV 309 L+ Sbjct: 325 LI 326 >UniRef50_C6MD69 tRNA pseudouridine synthase B n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MD69_9PROT Length = 319 Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 128/315 (40%), Positives = 185/315 (58%), Gaps = 23/315 (7%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + R +I+GVLLLDKP G+SSN ALQ K+++ A + GHTG LDP+ATG+L IC GEATK Sbjct: 3 KSRKLNISGVLLLDKPYGVSSNKALQTAKQLFLAAKCGHTGTLDPMATGLLAICFGEATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE-----QLAAALDTFRGDI 119 FS LL ++K Y +LG + T DA+G I PV + + + AL F G I Sbjct: 63 FSSVLLGANKTYEATLKLGFMSTTGDAEGII---SPVAATVQNPTLGECQQALSQFIGKI 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +Q+P M+SALK+ GK LY YAR+G + R+AR ITVY++ NEL+L I C GTY Sbjct: 120 KQMPPMFSALKHHGKPLYCYARKGEIIERQAREITVYDIQIQSLHCNELQLSIQCGTGTY 179 Query: 180 IRTIIDDLGEKLGC-GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 IR + +D+G+ LGC GA++ LRR A+ ++ + + TL L +++ A+E D Sbjct: 180 IRVLAEDIGKALGCGGAYLTGLRRTAIDRFNLSQAYTLSAL---------ENMSASE-RD 229 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT----SGAPLEGLVRVTEGENGKFIGM 294 L+P+D DYP + L S+++ + G + G G E +F+G+ Sbjct: 230 NSLLPVDHLLQDYPSITLDRLSALHIQQGRNILCPPGRHGMIKNGKQVRLYTEKNQFLGL 289 Query: 295 GEIDDEGRVAPRRLV 309 GEI E +A +RL+ Sbjct: 290 GEITIEQTIAVKRLL 304 >UniRef50_Q2KXZ0 tRNA pseudouridine synthase B n=2 Tax=Proteobacteria RepID=TRUB_BORA1 Length = 244 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 109/223 (48%), Positives = 146/223 (65%), Gaps = 3/223 (1%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +RRG+ ++GVLLLDKP G+SSN ALQ+ KR +A +AGHTG LDP ATG+L C+G ATK Sbjct: 3 KRRGQPLDGVLLLDKPVGLSSNHALQRAKRTLDAAKAGHTGTLDPFATGLLLCCMGRATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA---EQLAAALDTFRGDIEQ 121 S +L++DK YR + G+ TD+ D G IV P F L L F+G IEQ Sbjct: 63 ISGAMLNADKTYRATLQFGEETDSGDLTGNIVARAPEDFPGVEEANLREVLSRFQGSIEQ 122 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 IP MYSALK GK LYEYAR GIE+ R R + +Y + + G++ E+++ CSKGTYIR Sbjct: 123 IPPMYSALKRDGKPLYEYARAGIELERPPRRVMIYRIELLSFTGHQAEIDVACSKGTYIR 182 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 T+ D+G LGC AH+ LRR V + ++R VTL+ L+ + + Sbjct: 183 TLAQDIGRALGCYAHLFALRRTQVGPFSLDRAVTLDALQAMTD 225 >UniRef50_Q3BRP7 tRNA pseudouridine synthase B n=20 Tax=Xanthomonadaceae RepID=TRUB_XANC5 Length = 308 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/307 (42%), Positives = 179/307 (58%), Gaps = 11/307 (3%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +PR R ++G+LLLDKP G+SSN+ALQ +R+ A + GHTG+LDPLATG+LP+C GEA Sbjct: 2 KPRIVYRPLHGILLLDKPAGLSSNNALQAARRLLRAEKGGHTGSLDPLATGLLPLCFGEA 61 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQ 121 TK + LL S K Y LG TDT DADGQ + ER V S L AAL F G I+Q Sbjct: 62 TKIAGLLLGSAKAYDAEIVLGVTTDTDDADGQPLRERAVPDLSEADLQAALAPFIGRIQQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 +YSALK G+ LY AR+G + R + V + + + L L + C GTYIR Sbjct: 122 QAPIYSALKQGGEPLYAKARRGERIEAPVREVDVQAIDVLGYSAPGLRLRVTCGSGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 ++ DLGE LGCGAH+ LRRL V + +M+TLE L +E + LL Sbjct: 182 SLARDLGEVLGCGAHIASLRRLWVEPFRAPQMITLEALSAALEAGTEART--------LL 233 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 +P+++ + + + L T + F+ G +R + P G V V G +G G+G +D +G Sbjct: 234 LPIEAGLAGFARIVLDQTHAARFRMGQRLRDAAFP-PGQVAVF-GPDGTPSGLGLVDADG 291 Query: 302 RVAPRRL 308 R++P+RL Sbjct: 292 RLSPQRL 298 >UniRef50_A7NAR1 tRNA pseudouridine synthase B n=19 Tax=Francisella RepID=TRUB_FRATF Length = 302 Score = 214 bits (544), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 119/307 (38%), Positives = 186/307 (60%), Gaps = 18/307 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 ++ ++NGV++++K + +SSN LQ++K ++NA +AGHTG LDP+ATG+LPIC G ATK Sbjct: 2 KKNRLNLNGVVVINKAKDISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATK 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQI 122 +QYLLD+DK Y RLG TD+ DA+G+I+ + SAE L L F GD+ QI Sbjct: 62 IAQYLLDADKEYIATIRLGIETDSGDAEGEIIAKSINIPELSAEYLEIVLAKFSGDVVQI 121 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALKY G+ LY+ AR+G V ++R I +YEL + + L++ + CSKGTYIR+ Sbjct: 122 PPMYSALKYNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRS 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+G+ LGCG H+I L+R + + LE L++L + +Q I + + Sbjct: 182 LAIDIGKTLGCGGHLIALQRTQSGPFKLSEAFRLEQLKDL---SFEQKIAS-------IT 231 Query: 243 PMDSPASDYPVVN-LPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 ++S D P+ + L + +K G + L+G VR+ + E KF+ + E D+G Sbjct: 232 NIESVFIDKPIYSLLEEEKNDLYKRG--LFADKPHLDGTVRIYDVE--KFVAIAEF-DKG 286 Query: 302 RVAPRRL 308 ++ ++ Sbjct: 287 KLINKKF 293 >UniRef50_A1WLI1 tRNA pseudouridine synthase B n=103 Tax=cellular organisms RepID=TRUB_VEREI Length = 331 Score = 213 bits (543), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 131/315 (41%), Positives = 179/315 (56%), Gaps = 19/315 (6%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 SR R + R ++GVLLLDKP +SSN ALQK K + A +AGHTG LDPLATG+LP+C G Sbjct: 5 SRTRVQRRPVHGVLLLDKPLALSSNQALQKAKWLLRAEKAGHTGTLDPLATGVLPLCFGA 64 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE---RPVTFSAEQLAAALDTFRGD 118 ATKFSQ LD+ K Y IA G T T DA+G +++ P + E+L+A F G Sbjct: 65 ATKFSQLQLDAPKTYEAIALPGVTTSTGDAEGAVLQRCAVDPAQLAPERLSAVQRQFTGP 124 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVY--ELLFIRHEGNE--LELEIHC 174 I Q+P M+SALK G+ LY YAR GI + R AR + ++ EL ++H + +++ + C Sbjct: 125 ISQLPPMHSALKKDGRALYTYARAGIALERAARAVVIHALELSLVQHAPAQTAIKIAVTC 184 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKG YIRT+ +D+G LGCGAH+ LRR +ER ++LE L Q +P A Sbjct: 185 SKGCYIRTLAEDIGAALGCGAHLSALRRTDSGGIGIERCISLERL---------QALPEA 235 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGM 294 E L L P S + + V L ++ F +G P R P V V + +G+ Sbjct: 236 ERLA-CLQPPQSLLTRHLRVTLDSDNAARFLSGLP-RRGAWPDAPAVAVFGADPPALLGV 293 Query: 295 GEIDDEGRVAPRRLV 309 G I G + P RL+ Sbjct: 294 GHIAG-GCLLPDRLL 307 >UniRef50_A8MFB1 tRNA pseudouridine synthase B n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=TRUB_ALKOO Length = 299 Score = 213 bits (543), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 111/266 (41%), Positives = 167/266 (62%), Gaps = 18/266 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L + KP GM+S+D + V++ N + GHTG LDP A G+LPIC+G+ATK SQ+LL Sbjct: 1 MNGILNILKPPGMTSHDVVSVVRKKLNMKKVGHTGTLDPNAAGVLPICIGQATKISQFLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K+YR LG T+T D DG+I+ +R VT S +++ A+ +F G+ +QIP MYSA+K Sbjct: 61 DGKKKYRAELTLGIETNTEDIDGEILRQREVTSSPDEIREAVLSFIGEYKQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +GKKLYE ARQG+E+ R R +T+Y + I ++ ++ CSKGTYIRT+ D+GE Sbjct: 121 IKGKKLYELARQGVEIERAERTVTIYHIEIIEIFKEKVIFDVLCSKGTYIRTLCKDIGEV 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCG + +L R A S + ++ +T+E L+ A E ++ +L+PMD P Sbjct: 181 LGCGGVMSFLLRTASSDFSLDTAITIEELQ------------ALENVEDILLPMDYPLQH 228 Query: 251 YPVVNLPLTSSVYFK---NGNPVRTS 273 ++ + S Y K NGN + ++ Sbjct: 229 ---MSKAIVKSAYSKQVLNGNRIYSN 251 >UniRef50_A6GNL1 tRNA pseudouridine synthase B n=2 Tax=Burkholderiaceae RepID=A6GNL1_9BURK Length = 344 Score = 213 bits (541), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 134/346 (38%), Positives = 197/346 (56%), Gaps = 48/346 (13%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 ++ +++ R ++GVLL DK G SSN ALQ VKR+Y A + GHTG LDPLA+G+LP+ G Sbjct: 6 VAETKKQKRALSGVLLFDKSTGFSSNQALQIVKRLYRAEKTGHTGTLDPLASGLLPLMFG 65 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI--VEERPV-TFSAEQLAAALDTFRG 117 EATKF+ L+D+ K YR RLG ++T DA+G++ V R + + + +++ + F G Sbjct: 66 EATKFAADLIDASKTYRTKVRLGFSSNTGDAEGELTKVGNRALESITEDEVKQVCEQFVG 125 Query: 118 DIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN--------ELE 169 +I+Q+P M+SALK GK LYEYAR+GIE+ R AR + +++L I+ E N +E Sbjct: 126 EIQQVPPMFSALKKDGKPLYEYAREGIELDRPARTLLIHQLDVIKVEHNTNHGESSCTIE 185 Query: 170 LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 LE++CSKGTY+RT+ +D+ + LG ++ LRR A+ VER TLE L+ L E Sbjct: 186 LEVNCSKGTYVRTLGEDIAKALGTAGYLTELRRTAIGDLKVERAYTLEALKVLGESETPF 245 Query: 230 DIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE------GLVRV 283 D LD +L P+D+ V L + F +G + PLE G VRV Sbjct: 246 DA-----LDAVLFPVDALLGSLGKVELNNEFARRFSHGQRL-----PLELADAKPGRVRV 295 Query: 284 TEGE-----------------NGKFIGMGEIDDEGRVA---PRRLV 309 GE N +F+G G ++ +G+ A P RL+ Sbjct: 296 Y-GEAPAQDVNTEVSNTAFKGNSRFMGTGILETDGKGALLRPDRLI 340 >UniRef50_Q8RA40 tRNA pseudouridine synthase B n=10 Tax=Thermoanaerobacteraceae RepID=TRUB_THETN Length = 285 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 123/300 (41%), Positives = 180/300 (60%), Gaps = 20/300 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVL + KP GM+S+D + +++IY + GHTG LDP A G+LP+C+G ATKF+ YL+ Sbjct: 3 VDGVLNVLKPPGMTSHDVVDFIRKIYGIKKVGHTGTLDPDAAGVLPVCMGRATKFTSYLM 62 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + DKRYR G TDT D G+IVE PV F+ E+L L F+G+I+QIP +YSA Sbjct: 63 EHDKRYRFEITFGFSTDTLDKSGKIVESGPVPLFTLEKLQEVLSQFKGEIQQIPPIYSAK 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG-NELELEIHCSKGTYIRTIIDDLG 188 K +GKKLYEYAR+G EV +TVYEL I+++ + L L++ CSKGTY+R ++ D+ Sbjct: 123 KVKGKKLYEYARKGEEVEIPPIKVTVYELELIKYDAPHHLLLDVKCSKGTYVRALVRDIC 182 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +KL H+ +L R V + +E TLE ++E +AE Q P+D Sbjct: 183 KKLEVPGHMSFLIRTEVGDFDIESSYTLEEIKE--GKAEVQ-------------PVDKFI 227 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 +P V L SS NG +R + LV++ + +G FIG+G + E ++ P+RL Sbjct: 228 K-FPSVELDEVSSNKILNGQFIRNTYNVENSLVKLYDN-HGIFIGIGVAEGE-KIRPKRL 284 >UniRef50_C8NA97 tRNA pseudouridine synthase B n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA97_9GAMM Length = 298 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/308 (40%), Positives = 174/308 (56%), Gaps = 16/308 (5%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + I+GVLLLDKP G+SSN ALQ+ + +Y A +AGH G LDP ATG+LP+ GEA+KF +Y Sbjct: 5 KKIDGVLLLDKPAGISSNQALQQARWLYQAEKAGHGGTLDPFATGLLPVLFGEASKFGRY 64 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYS 127 LD DK Y G TDT D G ++ E P A A F G Q+P +YS Sbjct: 65 FLDGDKAYEATLAFGTETDTGDLSGAVIREAAPPPLDAVDWVALCAGFSGVQRQVPPVYS 124 Query: 128 ALKYQGKKLYEYARQGIEVPR-EARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 ALK G++ Y AR+G E+P+ EAR + ++EL F+ +G+ + CSKGTYIR+++ D Sbjct: 125 ALKVGGERAYALARRG-ELPQLEAREVVIHELRFLGMDGDGARFFVRCSKGTYIRSLLRD 183 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 + LG H LRR+AV+ + M L LR E + + A LL+P+D Sbjct: 184 MAAALGSAGHTHALRRVAVAG--LTAMTPLATLRAWQEAGDMTALQA------LLLPLDC 235 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 + P V +P + +NGN + + AP G V + +G +F G+GE D GRV P+ Sbjct: 236 CVAHLPRVVVPPEKLRFIRNGNDIACA-AP-HGEVALYDG--ARFFGVGEARD-GRVFPQ 290 Query: 307 RLVVEYPA 314 RL PA Sbjct: 291 RLCALPPA 298 >UniRef50_Q3SWP7 tRNA pseudouridine synthase B n=100 Tax=Alphaproteobacteria RepID=TRUB_NITWN Length = 358 Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/315 (39%), Positives = 180/315 (57%), Gaps = 19/315 (6%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 ++PRR RD++G + LDKP GM+S A+ VKR+++A RAGH G LDPLA+G LPI LGE Sbjct: 41 NQPRRDKRDVHGWVALDKPVGMTSTQAVAVVKRLFSAKRAGHAGTLDPLASGGLPIALGE 100 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIV---EERPVTFSAEQLAAALDTFRGD 118 ATK +++D KRYR G+ DT D +G+ V ERP +AE + A L +F G Sbjct: 101 ATKTVPFVMDGRKRYRFTVAWGEERDTDDTEGRAVATSAERP---TAEAIMALLPSFTGK 157 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSK 176 IEQIP YSA+K QG++ Y+ AR G VP RP+ ++ L H+ G+ + E C K Sbjct: 158 IEQIPPQYSAVKIQGERAYDLARDGEVVPLAPRPVEIHHLNLADHQDSGHSV-FEAECGK 216 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTY+R + D+G LGC H+ LRR V + M+ LEHL+ L ++A + L Sbjct: 217 GTYVRALARDMGRLLGCYGHICALRRTLVGPFDETSMIPLEHLQALCDRAASGE---GNL 273 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPV--RTSGAP-LEGLVRVTEGENGKFIG 293 D LL P+++ D P + + + G V R AP + G V VT G+ + Sbjct: 274 ADALL-PVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPNMSGTVYVTVA--GRLLA 330 Query: 294 MGEIDDEGRVAPRRL 308 + E+ + G + P+R+ Sbjct: 331 LAELGN-GELIPKRV 344 >UniRef50_C7I1W4 tRNA pseudouridine synthase B n=1 Tax=Thiomonas intermedia K12 RepID=C7I1W4_THIIN Length = 345 Score = 208 bits (529), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/313 (40%), Positives = 178/313 (56%), Gaps = 25/313 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N VLLL+KP+G++S AL +V+R A +AGH G LDPLA G+L +C G ATKF+Q L Sbjct: 11 VNSVLLLNKPRGLTSQQALFRVRRRLRAAKAGHGGTLDPLADGLLMLCFGAATKFAQRHL 70 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 ++DKRY + +LG RT T DA+G+IVE R V S Q+ A L F G I Q P +YSALK Sbjct: 71 EADKRYVAVLQLGVRTTTDDAEGEIVERRAVEVSRSQVDAVLPRFIGAISQTPPVYSALK 130 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GK LY YAR G V AR + ++ + + + ++L L +HC KGTYIR + D+GE Sbjct: 131 RDGKPLYAYARAGETVEVAARTVQIHSMDVLSLQNDQLALAVHCGKGTYIRALARDIGEA 190 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGAH+ L R A + +E+ +TL+ E + + +A+L LL P D Sbjct: 191 LGCGAHLAALTRTASGGFSLEQALTLD---------EAEALASADLRSRLL-PTDVLLQS 240 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSG-APLEGL-----VRV----TEGENGKFIGMGEIDDE 300 P NL + F +G R SG AP E + VRV G++ +G+G + Sbjct: 241 SPRQNLDAAQAQRFLHG--ARLSGLAPDEPVVPGEDVRVYGPLAAGQDAVLLGIGAWEQG 298 Query: 301 GR---VAPRRLVV 310 + PRRL+ Sbjct: 299 AESVVLTPRRLLC 311 >UniRef50_Q4FVL3 tRNA pseudouridine synthase B n=10 Tax=Bacteria RepID=TRUB_PSYA2 Length = 380 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 106/235 (45%), Positives = 148/235 (62%), Gaps = 7/235 (2%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIY-----NANRAGHTGALDPLATGMLPICLGEATKF 65 I+GV+L+DKPQGM+S + KVK ++ ++ +AGHTG LDP+ATG+LPICLGEATKF Sbjct: 21 ISGVILVDKPQGMTSQQVVSKVKYLFKSPNHDSKKAGHTGTLDPMATGLLPICLGEATKF 80 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPS 124 S Y LD+DK Y+ LG +TDT DADGQ+ E ++ F L F G +QIP Sbjct: 81 SHYQLDADKSYQATILLGSQTDTGDADGQVTAEATISAFDDTMLDKIAQQFLGAQQQIPP 140 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK GKKLYEYAR GIEV R R I + + + +++L + CSKGTY+R + Sbjct: 141 MYSALKKDGKKLYEYARAGIEVDRPPRDIILKAIELKAIDEQQIQLTVTCSKGTYVRVLA 200 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLREL-VEQAEQQDIPAAELLD 238 +D+ + +G H+ L RL V + ++ +TL +L L +EQ + +P +D Sbjct: 201 EDIAKAIGTLGHLTALSRLQVGDFKIDETITLANLEALALEQRQTYLLPVDACID 255 >UniRef50_C0GIW2 tRNA pseudouridine synthase B n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIW2_9FIRM Length = 294 Score = 204 bits (518), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 115/301 (38%), Positives = 177/301 (58%), Gaps = 14/301 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + KP GM+S++ + ++R+ + R GHTG LDP A G+LP+CLG+AT+ S+Y+L Sbjct: 1 MNGIINILKPPGMTSHNVVSFLRRLSSMRRIGHTGTLDPGAAGVLPVCLGQATRVSEYVL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK YR LG+ TDT DA G +V E+ V + +++ L +F G QIP MYSA+ Sbjct: 61 HMDKVYRAELTLGKSTDTEDASGTMVAEQAVPVLNKQEITKVLSSFVGQQTQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYE ARQG EV R+AR I VY + ++ + ++ ++ CS+GTY+RT+ ++ E Sbjct: 121 KVGGKKLYELARQGGEVDRKAREIHVYSMKLLQVDKQKITFDVACSRGTYVRTLCREIAE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG H+ +L R V + ++ TLE L L ++ E L +L+ D+ Sbjct: 181 KLGTVGHMSFLLRTGVGPFLLQDSFTLEELSALGQK---------ESLSAVLLSADTALG 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPL-EG-LVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P ++L + NGN + L EG LVR+ E +F+ +G I EGR+ P + Sbjct: 232 HLPAISLSHQQAGRVANGNTISLDTVDLSEGSLVRIY-AEKQQFLAVGRI-KEGRLKPEK 289 Query: 308 L 308 + Sbjct: 290 V 290 >UniRef50_Q3A4A3 tRNA pseudouridine synthase B n=2 Tax=Desulfuromonadales RepID=TRUB_PELCD Length = 306 Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 104/247 (42%), Positives = 155/247 (62%), Gaps = 11/247 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L++DKPQGM+S+ + +++R++ + GH G LDPLATG+L + LG+AT+ Q+L+ Sbjct: 1 MNGILIVDKPQGMTSHAVVGRIRRLFGLRKVGHAGTLDPLATGVLVVALGQATRILQFLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +K YR LG+ TDT D++GQIV P A+ +A + G +Q+P MYSAL Sbjct: 61 QENKVYRASLVLGKTTDTQDSEGQIVATSDPGHIDAQSVADVCHSMVGSYDQMPPMYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G LY+ ARQG+EV R+ R IT+++L + E + ++HCSKGTY+RTI D+G Sbjct: 121 KKDGVPLYKLARQGVEVSRKPRRITIFDLQLLAVEPPNITFDVHCSKGTYVRTICHDIGV 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCGAH+ LRRL + + V+ VTLE +E +D P LL+ + Sbjct: 181 KLGCGAHLTALRRLRSAPFDVKEAVTLEA----IELMAPEDRPE------LLLSIAEALR 230 Query: 250 DYPVVNL 256 +YP +N+ Sbjct: 231 EYPSLNV 237 >UniRef50_Q0SSD7 tRNA pseudouridine synthase B n=33 Tax=Clostridium RepID=TRUB_CLOPS Length = 294 Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 113/308 (36%), Positives = 180/308 (58%), Gaps = 21/308 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGV+ + K GM+S D + V+R+ + GHTG LDP A+G+LP+CLG+ATK Y++ Sbjct: 1 MNGVINIYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPEASGVLPVCLGKATKIIDYIM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 ++ K YRV +LG TDT D +G+++ EE + +++ +++F G I+Q+P MYSAL Sbjct: 61 ENKKVYRVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFVGTIDQVPPMYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-LELEIHCSKGTYIRTIIDDLG 188 K G +LYE ARQGIEV REAR IT+Y + I+ E N+ +++++ CSKGTYIR++ D+G Sbjct: 121 KQNGVRLYELARQGIEVHREARKITIYSIENIKIESNDNIQMDVCCSKGTYIRSLCYDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 EKL GA + L R+ + E + +E L E ELL+ ++ ++ Sbjct: 181 EKLNVGATMTALERIQNGPFIKEEAINIEDLTE-------------ELLEKHIISIEKAL 227 Query: 249 SDYPVVNLPLTSSVYFKNG-----NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 + + + +NG N + + L RV E +NG F+G+G+ D++G Sbjct: 228 DSFEKITVNEKFGKLLRNGVKVFDNRMYSEEVEFNKLYRVYE-DNGVFLGLGKRDEKGFK 286 Query: 304 APRRLVVE 311 + L+ E Sbjct: 287 LEKLLIEE 294 >UniRef50_A7VT62 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A7VT62_9CLOT Length = 297 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 116/297 (39%), Positives = 173/297 (58%), Gaps = 17/297 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++++DKP +S D + ++ ++ + GHTG LDP+ATG+LPI +G ATK Sbjct: 1 MNGIIVIDKPPRFTSFDVVAVMRGLFGTKKVGHTGTLDPMATGVLPILIGSATKAQDLTP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DS K Y RLG TDT D+ G + E PVT + L +AL FRG+I Q+P MYSA++ Sbjct: 61 DSGKEYVAGFRLGVVTDTEDSTGTVKETFPVTADEKALESALSHFRGEILQVPPMYSAIQ 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVY--ELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 G +LY+ AR+GIEV REARP+T++ ELL R E E + + CSKGTY+RT+ DLG Sbjct: 121 KNGVRLYDLARKGIEVEREARPVTIHELELLEYRQETGEGSIRVRCSKGTYVRTLCADLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 ++LGCG + LRR A Y ++ + L+ E + + A +L+ L P+DS Sbjct: 181 KRLGCGGIMTSLRRTAACGYTIKDSIPLD---------EAKSLKAEGVLEQRLRPVDSLF 231 Query: 249 SDYPVVNLPLTSSVYFKNGN--PVRTSGAPLE---GLVRVTEGENGKFIGMGEIDDE 300 +Y + + + F+NG + +G E +RV G +G F+G+G + E Sbjct: 232 LEYRPLKVTGPQAKRFQNGGALALERTGVKKEADGANIRVY-GPDGIFLGLGRVHRE 287 >UniRef50_B8FR03 tRNA pseudouridine synthase B n=2 Tax=Desulfitobacterium hafniense RepID=B8FR03_DESHD Length = 294 Score = 200 bits (509), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 112/295 (37%), Positives = 171/295 (57%), Gaps = 24/295 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+ + KP GM+S+D + +++RI N + GHTG LDP TG+LPIC+G+AT+ ++Y+ Sbjct: 1 MDGVINVLKPPGMTSSDVVVRLRRILNTRKIGHTGTLDPEVTGVLPICVGKATRLAEYIT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K YR G TDT DA G+I+ + P SAE + + G I QIP M+SA+K Sbjct: 61 NQGKSYRCEMIFGITTDTQDASGEILHKEPAQVSAEDFQRLIPQYLGSIRQIPPMFSAVK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE---LEIHCSKGTYIRTIIDDL 187 +QGK+LYE ARQG+EV R +R I + L + E E+ CSKGTYIRT+ D+ Sbjct: 121 HQGKRLYELARQGLEVERTSREIHIDHLQLMEWIAGEYPKAIFEVDCSKGTYIRTLCHDM 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD-IPAAELLDPLLMPMDS 246 G+ LGCGAH+ L RL + ++ ++LE ++ +EQ + IP ++L Sbjct: 181 GQTLGCGAHMSALIRLRSGPFHIQESLSLETIQNFMEQDDYSFLIPYIQVL--------- 231 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEG------ENGKFIGMG 295 D P V+L ++ F+NG + T+ + +E + EG G F+G+G Sbjct: 232 ---DLPRVSLSPQRALAFRNG--LSTAKSQIEVGAEIGEGCEVQVFSEGNFLGIG 281 >UniRef50_C7GDK4 tRNA pseudouridine 55 synthase n=6 Tax=Clostridiales RepID=C7GDK4_9FIRM Length = 321 Score = 200 bits (508), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 117/311 (37%), Positives = 176/311 (56%), Gaps = 12/311 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ + K +G +S D + K++ I + GHTG LDP A G+LP+CLG+ATK L Sbjct: 12 INGIINVYKEKGYTSFDVVAKLRGILKTKKIGHTGTLDPDAEGVLPVCLGKATKVCDLLT 71 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D +K Y + LG+ TDT D G ++EE PV + EQ+ A+ +F G+ Q+P MYSALK Sbjct: 72 DKNKEYVAVMLLGKVTDTQDTTGTVLEEHPVEVTEEQVKEAVLSFTGEYMQVPPMYSALK 131 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKL + AR G+ V R+ARP+ +Y + I+ E + + + CSKGTYIRT+ D+GEK Sbjct: 132 VNGKKLCDLARAGVTVERQARPVQLYSIEIIKMELPRVCMRVRCSKGTYIRTLCQDIGEK 191 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA---EQQDIPAAELLDPLLMPMDSP 247 L CGA + L R VS++ V+ + L + E V++A Q + AE+ D + +DS Sbjct: 192 LSCGACMESLLRTKVSEFCVQDALRLSEIEERVQKAAGQTQSEQWNAEMFD-FIYAVDSV 250 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRT------SGAPLEGLVRVTEGENGKFIGMGEIDD-E 300 Y + + NGN ++ + VR+ + E G+FIG+ E + Sbjct: 251 FLQYKKAVICKEWNKLLYNGNRMKKDMFVSYQKDWEQQKVRIYD-EEGRFIGIYEYSEIH 309 Query: 301 GRVAPRRLVVE 311 G P +L +E Sbjct: 310 GDYKPVKLFME 320 >UniRef50_Q609C2 tRNA pseudouridine synthase B n=1 Tax=Methylococcus capsulatus RepID=TRUB_METCA Length = 224 Score = 199 bits (505), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 95/170 (55%), Positives = 124/170 (72%), Gaps = 1/170 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVLLLDK GM+SN ALQ+ +++ + +AGHTG+LDPLA+G+LP+C EATK S YLL Sbjct: 9 LSGVLLLDKGSGMTSNSALQRARKLLDMRKAGHTGSLDPLASGILPLCFNEATKLSSYLL 68 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DSDKRYRV+ARLG TDT DADG++ PV L L F G I Q+P M+SAL Sbjct: 69 DSDKRYRVLARLGVTTDTGDADGEVRLRTPVPALDEPALLTVLAGFTGPILQVPPMFSAL 128 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 K++GK+LYE AR+G+EV R RP+TV+E+ + LEL++HCSKGTY Sbjct: 129 KHRGKRLYELARKGVEVERPPRPVTVFEIELAGRGADYLELDVHCSKGTY 178 >UniRef50_A8LL26 tRNA pseudouridine synthase B n=42 Tax=Rhodobacterales RepID=TRUB_DINSH Length = 304 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 112/287 (39%), Positives = 164/287 (57%), Gaps = 19/287 (6%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 R++GR ++G +++DKP G+SSN + KV+ ++A +AGH G LDP ATG+L I LGEATK Sbjct: 4 RKKGRAVSGWIVIDKPAGLSSNAVVGKVRWAFDAQKAGHAGTLDPEATGVLAIALGEATK 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 ++ D+ K Y RLGQ T+T D +G++ E S +++ AAL F GDI Q+P Sbjct: 64 TVPFVTDALKAYEFTVRLGQATNTDDGEGEVTETSDARPSDDEIRAALPPFEGDILQVPP 123 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTYIRTI 183 +SA+K G++ Y AR G E+ ARP+ V L FI R + + + LE+ C KG Y+R+I Sbjct: 124 QFSAVKIDGERAYARARAGQEMEIAARPLYVDSLTFIARPDPDHVTLEMVCGKGGYVRSI 183 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DLG LGC HV LRR + + LE L +L + PA LD LMP Sbjct: 184 ARDLGRALGCFGHVKSLRRTWSGPFELSDATPLETLEDLAKD------PA---LDAHLMP 234 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGK 290 +++ +D P + + +NGNP G+VR ++ E G+ Sbjct: 235 LETGLADLPELPCTPEGAARMRNGNP---------GMVRASDAEYGE 272 >UniRef50_A8FDD4 tRNA pseudouridine synthase B n=29 Tax=Bacilli RepID=TRUB_BACP2 Length = 309 Score = 196 bits (498), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 106/264 (40%), Positives = 157/264 (59%), Gaps = 16/264 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 INGVLLL K +GM+S+D + KV++I + + GHTG LDP +G+LPIC+G ATK +YL Sbjct: 2 INGVLLLHKERGMTSHDCVFKVRKILHTKKVGHTGTLDPEVSGVLPICIGRATKIVEYLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 D K Y +G T T D G+IVEE+ V S E++ AAL F+G IEQIP M+SA Sbjct: 62 DKSKTYDAEITIGFSTTTEDQTGEIVEEKKVQNPISEEEIDAALKQFQGTIEQIPPMFSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYEL-----LFIRHEGNELELEIHCSKGTYIRTI 183 +K GKKLYEYAR+GIE+ R +R I+++ + + + CSKGTY+RT+ Sbjct: 122 VKIGGKKLYEYAREGIEIERPSREISIHRIERTTPALFENGTVSFRFTVLCSKGTYVRTL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D+G+KLG AH+ +L R + ++ +TL+ LR++ E+ +D L+P Sbjct: 182 AVDIGKKLGFPAHMSHLIRTGSGDFTLDECITLDELRDISEEG---------TVDEHLVP 232 Query: 244 MDSPASDYPVVNLPLTSSVYFKNG 267 ++ + P + T + +NG Sbjct: 233 IERALNHLPKWEINDTLASKVENG 256 >UniRef50_C4Z5P0 tRNA pseudouridine synthase B n=2 Tax=Bacteria RepID=C4Z5P0_EUBE2 Length = 303 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 163/299 (54%), Gaps = 18/299 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVL + K QG +S+D + K++ I + GHTG LDP A G+LP+C+G+ATK + Sbjct: 1 MNGVLNVYKEQGFTSHDVVAKLRGILKTKKIGHTGTLDPDAVGVLPVCIGKATKLCDLIT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K Y + LG TDT D G+IV + V S + + F G+ EQIP MYSALK Sbjct: 61 DWGKTYEAVMLLGTTTDTLDISGKIVAQSEVNVSEVDVLKVCNEFIGEYEQIPPMYSALK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYEL----LFIRHEGNELELEIHCSKGTYIRTIIDD 186 Y G+KLYE AR+GIE+ R+ R + + L + + + + + + CSKGTYIR++ DD Sbjct: 121 YNGQKLYELARKGIEIERKPRTVHINTLRVNDINLSDKQKTVTITVDCSKGTYIRSLCDD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G+KLGCGA ++ L R V ++ ++ +TL + LV + E +D + +D Sbjct: 181 IGKKLGCGACMMKLTRTRVGEFMLDDTLTLNQISALVLKGEIED---------RITGIDK 231 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTE-----GENGKFIGMGEIDDE 300 SDY + S Y NGN + P + + E + FIG+ E DE Sbjct: 232 IFSDYQEIKFAEEYSRYLHNGNKLSREQIPADAAISDNEKYRVYDSDKCFIGVYEFRDE 290 >UniRef50_B8I6F0 tRNA pseudouridine synthase B n=5 Tax=Clostridium RepID=B8I6F0_CLOCE Length = 309 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 109/309 (35%), Positives = 169/309 (54%), Gaps = 28/309 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L + KP GM+S D + ++++ + GH G LDP A G+LP+C+G ATK ++++ Sbjct: 1 MNGILNVLKPAGMTSFDVIGYMRKLTGQKKIGHAGTLDPSAVGVLPLCIGNATKALEFMI 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + DK YR LG TDT D+ G ++ V + + ++ +F G IEQ+P MYSA+K Sbjct: 61 NKDKVYRAELTLGISTDTQDSSGTVLSFHSVDVTENDIKKSIISFMGTIEQLPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIR---------HEG-------NELELEIHC 174 GKKLYE ARQG + RE+R I +Y + IR EG ++ L+IHC Sbjct: 121 IGGKKLYELARQGQTIERESRTIQIYNIDIIRIWDDSEVFESEGIPQEFAIKKVLLDIHC 180 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKGTYIRT+ D+GEKLGCG H+ +L R +Y ++ +T+E + +L E Sbjct: 181 SKGTYIRTLCHDIGEKLGCGGHMSFLVRTRAGQYDLDNSLTIEEVAQLSETKS------- 233 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG-LVRVTEGENGKFIG 293 L+ L+P++ +Y + L + NG + + RV N F+G Sbjct: 234 --LEVHLLPVEKVFEEYDRIELNKEELFKYNNGVWLEVEKNKYKNTFYRVY--NNNSFLG 289 Query: 294 MGEIDDEGR 302 +GE+ ++G Sbjct: 290 LGEVFEKGN 298 >UniRef50_Q18BH7 tRNA pseudouridine synthase B n=8 Tax=Clostridiaceae RepID=TRUB_CLOD6 Length = 301 Score = 193 bits (491), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 169/296 (57%), Gaps = 20/296 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N ++ + KP GM+S+D + +V++I N + GHTG LDP A+G+LPIC+G+ATK + +L Sbjct: 1 MNKIISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVIL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + DK Y LG TDT DA G+I+++ FS E + A DT RG+I Q+P +YSAL Sbjct: 61 NKDKSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSAL 120 Query: 130 KYQGKKLYEYARQG--IEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 K GK++ + R G E+ + R + + ++ + +GN++ + CSKGTY+R+I D+ Sbjct: 121 KVNGKRMCDLVRSGRQSEITLKTRRVNIKDIKILSIKGNKVMFYVECSKGTYVRSICHDI 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 GE LGCGAH+ +L R + K+ ++ +TLE L E + LD L +D Sbjct: 181 GEYLGCGAHMSFLNRTSSGKFDLDNSITLEELELFYEN---------KTLDKYLYDIDYV 231 Query: 248 ASDYPVVNLPLTSSVYFKNGNPV------RTSGAPLEGLVRVTEGENGKFIGMGEI 297 + V L + Y+ NG + + + + VRV +N F+G+G++ Sbjct: 232 LDSFNYVVLNPNAIKYYSNGGSIDDKRFLKNNFDKDDEFVRVYSTDN--FLGLGKL 285 >UniRef50_C0ZF47 tRNA pseudouridine synthase B n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZF47_BREBN Length = 308 Score = 193 bits (490), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 150/229 (65%), Gaps = 9/229 (3%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++NGVL++DKP GM+S+D + +++R+Y + GHTG LDP TG+LPIC+G AT+ +YL Sbjct: 3 NVNGVLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGHATRLVEYL 62 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPV---TFSAEQLAAALDTFRGDIEQIPSMY 126 + KRY V+ RLG T T DA G++VE+ V + E++ A ++F G++EQ+P M+ Sbjct: 63 QELPKRYDVVMRLGSTTTTEDASGEVVEQAGVDAAWITTERIQALFESFLGEMEQVPPMF 122 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLF--IRHEGNELELEI--HCSKGTYIRT 182 SA+K GK+LY+ AR+G + R+AR +T+YEL I +G+ +++ CSKGTY+RT Sbjct: 123 SAVKVNGKRLYDLAREGTVIERQARKVTLYELTLHKISVDGDTVDVAFTCTCSKGTYMRT 182 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDI 231 + DLG LG AH+ LRR+ + + + L+ + E + A +DI Sbjct: 183 LCVDLGRALGYPAHMKLLRRIKSGPFQEQEAIPLQQIEE--QAASGEDI 229 >UniRef50_A5EWY7 TRNA pseudouridine synthase B n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWY7_DICNV Length = 297 Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 115/302 (38%), Positives = 167/302 (55%), Gaps = 16/302 (5%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 RDING+LLL+KP+G+SSN ALQK + ++ A +AGH G LDP A+G+LP+ LGEATKFSQY Sbjct: 3 RDINGILLLNKPRGISSNSALQKARALFQAKKAGHGGTLDPFASGLLPLFLGEATKFSQY 62 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYS 127 +L +DK+Y V R G+ T T D +G+ + P + L F+GD +Q P ++S Sbjct: 63 MLGADKQYLVGIRFGRETTTDDCNGETLNTLPPPDLLNLDWQSVLAHFQGDYQQTPPIFS 122 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 ALK GK+ YE AR+GI R I + I + +L I CSKG+YIR DL Sbjct: 123 ALKINGKRAYELAREGIIPEIAPRIIHIASCSVIAVNKDYAQLRIRCSKGSYIRAFARDL 182 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G L AH L R A + + + L L+ L D LL+P++ Sbjct: 183 GRFLNSAAHAETLIREASGHFALNQAHDLSTLKTLSLSER----------DALLLPIEYA 232 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 + P + +P + +GN + + GL +++ +G F+G+GE D GR+ P+R Sbjct: 233 LKNIPPLAIPEDKIRFICHGNDIAITAT--NGLYQLS--ADGHFLGIGEARD-GRLYPKR 287 Query: 308 LV 309 L+ Sbjct: 288 LL 289 >UniRef50_C4GBF3 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GBF3_9FIRM Length = 315 Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 106/277 (38%), Positives = 160/277 (57%), Gaps = 12/277 (4%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L + K G +S D + K++ I + + GHTG LDP A G+LP+C+G ATK + + Sbjct: 3 SGILNVYKEPGFTSFDVVAKLRGILHIRKIGHTGTLDPAARGVLPVCIGRATKAVNLMAN 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y +LG RTD+ D GQI+E PV+ S +++ + +F G +QIP MYSA K Sbjct: 63 WTKTYIADMQLGIRTDSQDMTGQILERNPVSVSEDEIQREVASFFGPQDQIPPMYSARKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GK+LY YARQGIE+ R A I +Y++ + E + +E+ CSKGTYIRT+ D+G+ L Sbjct: 123 GGKRLYHYARQGIELERRASHIVIYDIQILSMELPHVIMEVTCSKGTYIRTLCSDIGDAL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GCGA + L R+ V + + + L+ + Q+ AA L+ +L P+D+ +D Sbjct: 183 GCGASMAALERIRVGDFDSKNALRLDQI---------QEAAAAGRLEDILYPVDAVFADL 233 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGEN 288 P + LP + KNG P+ EG+ + EGE Sbjct: 234 PALKLPEGLTKAGKNGAPI---AEKTEGITCLYEGEK 267 >UniRef50_A5D2S3 tRNA pseudouridine synthase B n=3 Tax=Peptococcaceae RepID=TRUB_PELTS Length = 316 Score = 192 bits (489), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 99/250 (39%), Positives = 150/250 (60%), Gaps = 15/250 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + KP GMSS+D + +++RI+ +AGHTG LDP A G+L +CLG AT+ +++LL Sbjct: 1 MNGIVNVLKPPGMSSHDVVDRIRRIFGVKKAGHTGTLDPGAAGVLVVCLGVATRLARFLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ-LAAALDTFRGDIEQIPSMYSAL 129 DK YRV G T T D+ G+I ++R +F E + L F G++ Q+P M SA+ Sbjct: 61 GEDKEYRVEITFGMSTSTGDSYGEITDQRDASFLKEHDIIRVLPEFTGEVRQVPPMTSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-----ELELEIHCSKGTYIRTII 184 K++GKKLYE AR+G+ V R+ R + + L FIR G + + CSKGTY+R++ Sbjct: 121 KWRGKKLYELAREGLVVERQERAVYIKSLEFIRGSGWGTPSPRALMHLSCSKGTYVRSLC 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+G +LGCGAH+ +L R + + VTLE L Q + +L+ ++ M Sbjct: 181 HDMGSRLGCGAHMSFLVRTRAGPFKIADSVTLEEL---------QAAASKGVLERKIIEM 231 Query: 245 DSPASDYPVV 254 D S+YP V Sbjct: 232 DRAVSEYPEV 241 >UniRef50_C4ZBF1 tRNA pseudouridine synthase B n=9 Tax=Firmicutes RepID=C4ZBF1_EUBR3 Length = 299 Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 175/309 (56%), Gaps = 19/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + K +G +S D + K++ I++ + GHTG LDP A G+LP+CLG+AT+ L Sbjct: 2 VNGIINVYKEKGYTSFDVVAKLRGIFHQKKIGHTGTLDPDAQGVLPVCLGKATRVCDLLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK Y+ + LGQ TDT D GQ++ + V + + + A+ F G +Q+P MYSALK Sbjct: 62 DKDKVYKAVLLLGQETDTQDISGQVLNQAKVNVTEQAVYDAISQFIGRQKQVPPMYSALK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYE AR+G + R+AR I V+++ + E+ + +HCSKGTYIRT+ +D+GE+ Sbjct: 122 VNGKKLYELAREGKVIERKARDIEVFDIKVESIDLPEVTMTVHCSKGTYIRTLCNDIGER 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC + L R+ V+ + +E +TL ++ V++ D ++MP+D + Sbjct: 182 LGCHGCMKSLLRVRVAGFDLEHALTLSQIQSKVDEG---------CFD-MVMPVDGVFEN 231 Query: 251 YPVVNLPLTSSVYFKNGNPV-------RTSGAPLEGLVRVTEGENGKFIGM-GEIDDEGR 302 P V+ + +NGN + A + RV E G F+G+ +D+ G Sbjct: 232 LPAVHTASDADKLVRNGNKIPAVLTDYLKHSADSDIRYRVYNHE-GIFVGVYSYLDETGE 290 Query: 303 VAPRRLVVE 311 P ++ +E Sbjct: 291 FKPVKIFME 299 >UniRef50_A7H9F6 tRNA pseudouridine synthase B n=4 Tax=Anaeromyxobacter RepID=A7H9F6_ANADF Length = 315 Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/314 (37%), Positives = 166/314 (52%), Gaps = 28/314 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I GVL++DKP G +S D +Q+V+RI A RAGH G LDP ATG+L IC+G+A K QYL Sbjct: 3 IAGVLVVDKPAGPTSFDVVQRVRRILRAPRAGHAGTLDPAATGVLAICVGDAVKLQQYLS 62 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D+DK Y G TDT DA+G++VE P +AE+L A L FRGDI Q+P MYSA+ Sbjct: 63 DADKAYEATVAFGAATDTEDAEGRVVERGDPSRLTAEELRAVLPRFRGDISQVPPMYSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFI----------RHEGNELELE---IHCSK 176 + G++L+E AR G V R R + V L + R E + L + C K Sbjct: 123 RVGGRRLHEAARAGESVERAPRQVRVDALELLELLPLEPPQDRVEAAPVRLARFTVRCGK 182 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTY+RT+ DLG LG AH+ LRR S + E VTLE L +A Sbjct: 183 GTYVRTLAADLGRALGVPAHLAALRRTEASGFRAEEAVTLEEAERLGREA---------- 232 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGE 296 L L+P+ +PV+ + + +G +R AP + R +G+ + + Sbjct: 233 LLARLVPLGDALRTFPVLEVSWAEARDLAHGRALRRELAPGKAAARAP---DGRLVAVCA 289 Query: 297 IDDEGRVAPRRLVV 310 D G + P R+++ Sbjct: 290 AGDRG-LCPERVLL 302 >UniRef50_B0PH12 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0PH12_9FIRM Length = 300 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 103/258 (39%), Positives = 144/258 (55%), Gaps = 11/258 (4%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 G+L +DKP+G +S D + K++ I R GH G LDP+ATG+LP+ G ATK L Sbjct: 5 GGILCIDKPEGFTSFDVVAKLRGIARERRVGHAGTLDPMATGVLPLFFGRATKACDILPR 64 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DKRY +LG TDT D G ++ E+ ++ AA GDI Q P MYSA++ Sbjct: 65 QDKRYLASFKLGVTTDTQDITGTVLSEQTPDADEARVRAAAAGLVGDIMQTPPMYSAVRV 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLGE 189 G++LYE AR+G+EV R ARP+TVY + F + N +++HCSKGTYIRT+I D+G Sbjct: 125 NGQRLYELARRGVEVERAARPVTVYSIDFTACDVQANTFTIDVHCSKGTYIRTLIADIGA 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LGCGA + LRR + + + VT+E +QA Q + LL P+++ Sbjct: 185 ALGCGAVMTALRRTMAASFTLADCVTIEQ----AQQAAQDGV-----FGTLLRPVETAFC 235 Query: 250 DYPVVNLPLTSSVYFKNG 267 P L + F NG Sbjct: 236 ALPSAALNEKQTKMFLNG 253 >UniRef50_D0LZ86 tRNA pseudouridine synthase B n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZ86_HALO1 Length = 371 Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 105/245 (42%), Positives = 142/245 (57%), Gaps = 9/245 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVL++DKP G++S + +VKR R GHTG LDP+ATG+LP+CLGEATK + YLL Sbjct: 32 LHGVLVVDKPAGITSAAVVARVKRHLGVRRVGHTGTLDPMATGVLPLCLGEATKIAGYLL 91 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ---LAAALDTFRGDIEQIPSMYS 127 DK Y LG TDT DA+GQ+ P +A L L TF G EQ+P M+S Sbjct: 92 AEDKGYEAELLLGVETDTLDAEGQVTARAPEAAAAVDEAALRRVLATFVGPGEQVPPMFS 151 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 ALK GK+L+E AR G EV R RP+ ++ELL +HCSKGTY+R++ DD+ Sbjct: 152 ALKRGGKRLHELARAGQEVERPPRPVVIHELLLHAFATPRARFSVHCSKGTYVRSLADDI 211 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G LGCGAH+ LRR + + + + L + + E+A A L+ P + P Sbjct: 212 GRALGCGAHLSALRRTRSGAFAIAQAIPLAAIEDDPERAR------AALVSPAVAVAHLP 265 Query: 248 ASDYP 252 A P Sbjct: 266 AVAIP 270 >UniRef50_Q98BI6 tRNA pseudouridine synthase B n=2 Tax=Mesorhizobium RepID=TRUB_RHILO Length = 325 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 112/321 (34%), Positives = 170/321 (52%), Gaps = 17/321 (5%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 R +++GR ++G ++LDKP GM S +A+ K+K ++ A +AGH G LDPLA+GMLPI LGEA Sbjct: 4 RGKKKGRPVSGWVVLDKPVGMGSTEAVSKIKWLFQAEKAGHAGTLDPLASGMLPIALGEA 63 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 TK Y+ D K YR GQ T D +G + + + + ++ A L + G I Q Sbjct: 64 TKTVPYVQDGAKIYRFTVAWGQERSTDDLEGPVTKSSDLRPAEAEVKALLPKYTGVIMQT 123 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P +SA+K G++ Y+ AR+G V AR I + L I H + E+ C KGTY+R+ Sbjct: 124 PPQFSAIKIAGERAYDLAREGETVDIPAREIEIGRLDIIEHHADHTVFEVECGKGTYVRS 183 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPA-AELLDPLL 241 + D+G LGC H+ LRR+ V + E VT+ L A+ +D P A+ D + Sbjct: 184 LARDMGRDLGCFGHISDLRRVEVEPFTSEDFVTIAELEAARFGAQGEDKPEPADDADAID 243 Query: 242 MPMDSPASD------------YPVVNLPLTSSVYFKNGNPV--RTSGAPLEGLVRVTEGE 287 +P+D A D P + + ++ + GNPV R AP+E Sbjct: 244 VPVDFGAIDALLVDTSAALDCLPQIAISDDAATKIRLGNPVIIRGRDAPVEA-EEACATA 302 Query: 288 NGKFIGMGEIDDEGRVAPRRL 308 GK + +G I ++G P+R+ Sbjct: 303 RGKLVAIGAI-EQGMFKPKRV 322 >UniRef50_Q01SZ5 tRNA pseudouridine synthase B n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=TRUB_SOLUE Length = 293 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 111/295 (37%), Positives = 166/295 (56%), Gaps = 22/295 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+++DKP+G +S+D + KV+RI + GH G LDP+ATG+LP+ + AT+ +Q+ Sbjct: 1 MDGVIVIDKPEGWTSHDVVNKVRRIAKTKKVGHLGTLDPIATGVLPLVIERATRLAQFYT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 S+K Y + R G T + D G+ E+ V +AEQL AL+ FRG+ Q P SA Sbjct: 61 RSEKIYEGLVRFGWSTSSYDRAGEPTSEKVEVQLTAEQLEHALENFRGEFLQRPPAVSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K +GK+ YE AR+ + V E + VYEL + EGN L HCS GTY+R+I DLG+ Sbjct: 121 KVEGKRSYELARKNMAVELEPVKVHVYELTLLALEGNLARLRAHCSGGTYMRSIAHDLGQ 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD--IPAAELLDPLLMPMDSP 247 LGCGAH+ LRRLA ++ +++ TLE L L + D +PA +LL P Sbjct: 181 ALGCGAHLQELRRLASGEFELDQARTLEQLESLAAEDRLPDAIVPAGKLL---------P 231 Query: 248 ASDYPVVNLPLTSSVYFKNG-----NPVRTSGAPLEGLVRVTEGENGKFIGMGEI 297 A +P V + ++ +NG +P R+ P V+ G + +GE+ Sbjct: 232 A--FPSVFVDEITAAQIRNGRDFPASPFRSQ--PASKYVKAVT-RTGDLVAIGEV 281 >UniRef50_B1ZX46 tRNA pseudouridine synthase B n=3 Tax=Verrucomicrobia RepID=TRUB_OPITP Length = 241 Score = 188 bits (477), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 146/234 (62%), Gaps = 5/234 (2%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +PR+ +++GVLL+DKP +S+D + +++R N R GH G LDP+ATG++ + +G Sbjct: 1 MIQPRK---ELDGVLLVDKPTAHTSHDVVARLRRKLNMKRIGHAGTLDPMATGLMILLIG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 +AT SQYL DK Y LG+ TD+ DADG+++ PV F+ ++ AA+ F GD Sbjct: 58 KATTISQYLTSLDKEYEGTIELGKVTDSQDADGEVLSTLPVPPFTEAEIRAAMAGFMGDQ 117 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q P MYSA+K G LY+ AR+G EV RE R I V R + + + C+KGTY Sbjct: 118 YQTPPMYSAIKVDGVPLYKTARKGGEVEREPRFIRVSSFELTRFALPQFDFRLRCTKGTY 177 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLREL-VEQAEQQDIP 232 +RTI DLG++LGCGAH+ LRR A K+ + +TL+ + L + + E++ IP Sbjct: 178 VRTIAHDLGQRLGCGAHLAALRRTATDKFKLADALTLDAIEALPLPEIEKRLIP 231 >UniRef50_B8FCY8 tRNA pseudouridine synthase B n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCY8_DESAA Length = 340 Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 136/224 (60%), Gaps = 3/224 (1%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 +G +G++++DKP G++S AL KVK+ +AGHTG LDP ATG+L CLG AT+ + Sbjct: 8 KGAVNHGIIVVDKPSGITSAKALDKVKKTLGVKKAGHTGTLDPFATGVLVCCLGAATRLA 67 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQI---VEERPVTFSAEQLAAALDTFRGDIEQIP 123 ++ L DK Y + LG TDT D G++ +E + +Q+ A F+G+I+Q P Sbjct: 68 RFFLHGDKTYEAVMHLGIETDTQDLTGEVASRMEAEAAQVTPQQIREAAARFQGEIDQFP 127 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 +YSALK+QG LY++AR+G V ++AR IT+Y L CS G YIRT+ Sbjct: 128 PVYSALKHQGVPLYKWARKGTPVQKDARRITIYSLDVTDINPPMAGFTARCSGGAYIRTL 187 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 D+G +LGCGAH+ LRR S + +E VTL+ L +LV+ + Sbjct: 188 CADIGRELGCGAHLHALRRTENSGFSIEEAVTLDQLEDLVQSGK 231 >UniRef50_C7RGP3 tRNA pseudouridine synthase B n=4 Tax=Anaerococcus RepID=C7RGP3_ANAPD Length = 298 Score = 186 bits (473), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 110/297 (37%), Positives = 165/297 (55%), Gaps = 21/297 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L +DK +G+SS + V+R N + GHTG LD A+G+LPI +G+AT+ S Y++D Sbjct: 3 SGILNVDKEKGISSARVVSLVRRGLNQKKVGHTGTLDLEASGVLPIVVGKATRVSDYMMD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y + G++TDT DA G++++E T E L L+ ++G+IEQIP MYSALK Sbjct: 63 KDKTYECLMEFGKKTDTLDAAGEVIKESSKTCKREDLEEVLEKYKGEIEQIPPMYSALKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GKKLY+ AR G E+ R+ R + +Y+L I + ++ + CSKGTYIRT++DD+GE L Sbjct: 123 DGKKLYDLARSGKEIERKKRKVKIYDLKLIDFDFPYAKISVTCSKGTYIRTLVDDIGEDL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRE-----LVEQAEQQD-----IPAAELLDPLL 241 C + V LRR+ + + V+ V + E L+ + E+ D P +L D L Sbjct: 183 ECLSFVKELRRVRIGDFLVDEAVKSSDILEMDKDKLISKLERVDKALDKFPRFDLADNLF 242 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEI 297 VN +T + K VR S GL + E G F+ M ++ Sbjct: 243 D---------KAVN-GMTIKIDSKIDEEVRVYSRNEFIGLAKSFESRGGYFLKMEKV 289 >UniRef50_B3DZL5 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZL5_METI4 Length = 237 Score = 186 bits (472), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 90/214 (42%), Positives = 132/214 (61%), Gaps = 1/214 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 DI+GVLL+DKP+G +S+D + V++ + + GH G LDPLATG+L + LG+ATK L Sbjct: 2 DIDGVLLVDKPKGFTSHDVVDFVRKKFKIKKVGHCGTLDPLATGLLVLVLGKATKIQDLL 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSA 128 + DKRY + RLGQ T T D+DGQ+VEE+PV S E++ D + GD Q+P M SA Sbjct: 62 MSEDKRYEGVLRLGQSTLTQDSDGQLVEEKPVPPLSLEEIKKVFDRYVGDFYQVPPMISA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K G LY+ AR+G E+ R+ R + VY + + + E+ C KG Y+RT D+G Sbjct: 122 IKSHGVPLYKLAREGKEIERKPRLVHVYSYEIKKWDSPFIHFEVVCGKGFYVRTYCHDIG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLREL 222 + LGCG H+ L RL + + + ++ + L L Sbjct: 182 QDLGCGGHLFSLVRLQSGNFKLNQALSFDFLNSL 215 >UniRef50_A1HSB7 TRNA pseudouridine synthase B n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSB7_9FIRM Length = 292 Score = 186 bits (472), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 112/298 (37%), Positives = 162/298 (54%), Gaps = 19/298 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + KP GM+S+DA+ V+R+Y R GH G LDP A G+LP+ +G AT+ +Y D+ Sbjct: 4 GILNILKPPGMTSHDAVAFVRRLYGVKRVGHAGTLDPAAAGVLPVFVGAATRLIEYTADA 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFS-AEQLAAALDTFRGDIEQIPSMYSALKY 131 DK YRV +G+ TDT D G I+ P L A L F G+IEQIP MYSA+K Sbjct: 64 DKSYRVEMTVGRETDTGDDTGNIIRTAPCVLPPISDLDALLQEFTGEIEQIPPMYSAIKI 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 G+KLY+ ARQGI V R+ R I + ++ I + ++ CSKGTYIRT+ D+G +L Sbjct: 124 GGQKLYDLARQGIIVERQPRRIKINKIQLIAVREQRIYFDVDCSKGTYIRTLCTDIGRRL 183 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GC A + +L R V + + +TLE + E+A Q D + + Sbjct: 184 GCPAVMSFLVRTRVGNFQLTEALTLEEIAAEKERALQAP--------------DLAVAHF 229 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P + L + + G VR +G++R+ + +FIG+GE +G AP R V Sbjct: 230 PPIFLTVAQAKAIVQGQAVRID-CRNQGMIRLYNDQK-QFIGIGE--KQGPGAPLRPV 283 >UniRef50_A0LE16 tRNA pseudouridine synthase B n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LE16_MAGSM Length = 319 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 113/315 (35%), Positives = 170/315 (53%), Gaps = 17/315 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R RR+G I+G L + K G+SS+ +++V R AN+AGH G LDP + G+LPI LG Sbjct: 1 MGRRRRKGVVIHGWLAIHKEPGLSSSQVVERVIRTTKANKAGHGGTLDPFSEGVLPIALG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK S +L+ DK YR + GQ TD+ D G ++EE+ S +L A L F G+IE Sbjct: 61 EATKTSGMVLNGDKSYRCWLKFGQETDSGDLTGVLLEEQGRVPSEAELRAVLPQFMGEIE 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+P ++SAL+ G++ Y+ AR+G EV +R + + L + E + L++ C KGTYI Sbjct: 121 QVPPVFSALRVDGERAYKRARRGEEVQLASRRVRIDRLELVGFEADTAVLDVACGKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R++ D+ L AH++ L R + + VTLE LRE + Q+I Sbjct: 181 RSLGVDIARALHSRAHLVRLLRTGTMGFGLNDAVTLEQLREACSEGRLQEI--------- 231 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL-EGLVRVTEGENGKFIGMGEIDD 299 L P+D D P + + + + G V A G+VR+ + +G+F +GEI Sbjct: 232 LYPVDRVLDDIPALRMTGNAWYRLRQGQEVEVEDAATPAGMVRLQD-PDGQFGLLGEISA 290 Query: 300 EG------RVAPRRL 308 + R+ P RL Sbjct: 291 QADLQGLRRIKPTRL 305 >UniRef50_B2A3A0 tRNA pseudouridine synthase B n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3A0_NATTJ Length = 299 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 116/308 (37%), Positives = 173/308 (56%), Gaps = 23/308 (7%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L + K G +S+D +Q +++ Y + GH G LDP A G+LP+ LG+AT+FSQY+L Sbjct: 3 GFLTVCKTPGYTSHDVVQYLRKNYQVKKVGHLGTLDPGAVGVLPLALGKATRFSQYILSQ 62 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFS-AEQLAAALDTFRGDIEQIPSMYSALKY 131 DK+YR LG+ TDT DA G+ +E+ V + E L G+I Q+P MYSA+K Sbjct: 63 DKKYRFELTLGEATDTLDAQGKTIEKDEVQNTHIENLKNKYQELIGNINQVPPMYSAIKQ 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFI---RHEG-NELELEIHCSKGTYIRTIIDDL 187 +GKKLYE AR+G EV R R +T++ L + H+G + ++HCSKGTYIRT+ +DL Sbjct: 123 KGKKLYELAREGKEVERTPRQVTIHSLNLVDIYEHQGKHRFLFDVHCSKGTYIRTLAEDL 182 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 + G ++ +L R A + ++ + +EL EQ I L P+D P Sbjct: 183 AKLSGTVGYMSFLIRTATGIFNLDDAI---FPQELPEQKTDLGIH--------LFPVDYP 231 Query: 248 ASDYPVVNLPLTSSVY-FKNGNPVRTSGAPLEG-LVRVTE----GENGKFIGMGEIDDEG 301 SD P + L + + FKNGN V T+ G L R+ E G+N F+G+G+I Sbjct: 232 LSDIPSLVLKESQQLKRFKNGNFVNTAVIAESGELYRIYEEDSSGDN-LFLGLGKITSSN 290 Query: 302 RVAPRRLV 309 + P +++ Sbjct: 291 TLKPEKII 298 >UniRef50_O66922 tRNA pseudouridine synthase B n=2 Tax=Aquificaceae RepID=TRUB_AQUAE Length = 287 Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 110/302 (36%), Positives = 172/302 (56%), Gaps = 17/302 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G LL+DKP+G++S + +++VK A +AGHTG LDP+ATG+L I + +AT+FSQ+ + Sbjct: 1 MDGALLIDKPKGITSTEVVERVKEKLKARKAGHTGTLDPIATGLLIILINKATRFSQFFI 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K YR + G TDT DA G++VE + ++L L+ FRG+I Q P +SA K Sbjct: 61 GMPKTYRFTVKFGAETDTYDAQGKVVETYEGELNCDKLKEVLNEFRGEILQTPPPFSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVY--ELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +G++ YE AR+G +V + ITVY ELL E E S G Y+R++ D+G Sbjct: 121 IKGRRAYELARKGKKVELKPVKITVYSLELLSCNPREKEAEFLAEISSGGYVRSLAYDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +KLG G ++ LRRL + + VE V+LE + ++E + ++P+D+ Sbjct: 181 KKLGIGGYMKELRRLKIDEISVEEAVSLE------------EFLSSENPEEYVLPVDTLF 228 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 P V L + G + EGLV++ E+ KFIG+GE+ G ++P+RL Sbjct: 229 RVIPEVRLNTFEAGKILQGKRILIKNYDYEGLVKIY--EDSKFIGIGELKG-GVLSPKRL 285 Query: 309 VV 310 +V Sbjct: 286 LV 287 >UniRef50_B1GZN9 tRNA pseudouridine synthase B n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=TRUB_UNCTG Length = 230 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/203 (44%), Positives = 132/203 (65%), Gaps = 1/203 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +I+G+LLLDKP G++S DA+ K+K++ N + GH G LDP +TG+L + +G+ATK Sbjct: 7 NIDGLLLLDKPFGITSFDAVYKIKKVLNVEKTGHCGTLDPASTGLLLVLMGKATKLQAKF 66 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSA 128 + DK Y LG TD+ D DG+++ E V + E++ ++ F G+I QIP MYSA Sbjct: 67 MKKDKVYLSSFLLGMVTDSGDLDGKVISENSVLNINIEKIKKMVEMFEGEIFQIPPMYSA 126 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LKY GKKL E ARQGIEV R+ R +T+ + + ++G+ +++ I CS GTYIRT+ DLG Sbjct: 127 LKYNGKKLCELARQGIEVERKPRKVTIKKFEVLSYDGDIVKVRIECSSGTYIRTLAQDLG 186 Query: 189 EKLGCGAHVIYLRRLAVSKYPVE 211 L CGA V LRR + + ++ Sbjct: 187 NVLKCGATVKTLRREKIDIFDIK 209 >UniRef50_Q2RMR8 tRNA pseudouridine synthase B n=11 Tax=Alphaproteobacteria RepID=TRUB_RHORT Length = 308 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 113/320 (35%), Positives = 174/320 (54%), Gaps = 25/320 (7%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSR RRRG+ I+G L +DKP G++S D + +++R +A + GH G LDPLA+G+LPI G Sbjct: 1 MSR-RRRGQAIHGWLAIDKPVGITSTDVVNRLRRTMDAAKVGHGGTLDPLASGVLPIAFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK Y++D K Y ++ G+ DT D +G++++ V A+ + A L F G+IE Sbjct: 60 EATKTVSYVMDGTKVYHMVVGWGEARDTDDREGKVIDTSDVRPDAQAITAMLARFTGEIE 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL-ELEIHCSKGTY 179 Q+P +YSA+K +G++ Y+ AR V ++R I + +L + + I KG Y Sbjct: 120 QVPPIYSAVKVEGRRSYDLARADQAVELKSRKILIKDLTLLETSTPDFGHFRIVSGKGAY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R++ DL LG HV+ LRRLA + E ++L+ + L D P +E Sbjct: 180 MRSLARDLALALGTVGHVVALRRLACGPFTAETAISLDMVDAL-----GHDAPHSE---- 230 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVR----TSGAPLEGLVRVTEGE------NG 289 L+P+++ +D P V L + G PV S PL GL +GE NG Sbjct: 231 SLLPIEAALADIPAVPLTEAEARRLSQGQPVSLLHLASRTPLNGL---AQGETVQALLNG 287 Query: 290 KFIGMGEIDDEGRVAPRRLV 309 K + + +I EG + P R+V Sbjct: 288 KLVALAKI-VEGEIRPLRVV 306 >UniRef50_C7H6A8 tRNA pseudouridine synthase B n=2 Tax=Faecalibacterium prausnitzii RepID=C7H6A8_9FIRM Length = 295 Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 118/306 (38%), Positives = 171/306 (55%), Gaps = 19/306 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G+L++DKP +S D + K++ I + GH+G LDP+ATG+LP+ G A+K L Sbjct: 2 MQGILIVDKPTDWTSFDVIAKLRGILGTRKLGHSGTLDPMATGVLPVFCGGASKAVDLQL 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K YR + RLGQRTDT D G ++E PVT ++L A L F G Q P MYSA+K Sbjct: 62 DHTKAYRAVLRLGQRTDTGDVTGTVLETTPVTAGEQELLAVLPQFLGPRMQTPPMYSAVK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG----NELELEIHCSKGTYIRTIIDD 186 G+ LY+ AR+G V R+ARPI E+L IR+EG NE L + CSKGTYIR ++++ Sbjct: 122 INGQPLYKLAREGKTVERKARPI---EILDIRYEGSPAENEYALTVKCSKGTYIRVLLEE 178 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 + E +G + LRR+A Y TLE + QA + P E L L++P++S Sbjct: 179 IAEAMGQKGTMSALRRVAAGVYSEADAHTLEEI-----QAAKDAGP--EALQALMLPVES 231 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAP-LEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + P++ + NG P TS P +G RV G+F+G+ + + G + Sbjct: 232 VFASLPLLVADERVEQHLYNGCP--TSRYPAADGRYRVRNA-GGQFLGLANVVN-GVLKV 287 Query: 306 RRLVVE 311 +L VE Sbjct: 288 EKLFVE 293 >UniRef50_Q812X9 tRNA pseudouridine synthase B n=128 Tax=Bacilli RepID=TRUB_BACCR Length = 307 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/265 (37%), Positives = 149/265 (56%), Gaps = 17/265 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + GV+LL KP+GM+S+D + K+++I R GHTG LDP TG+LPIC+G ATK +Q+L Sbjct: 1 MEGVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG T T DA G++VE + V T + ++ L G IEQ+P M+SA Sbjct: 61 SETKTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRMEVEKVLAELTGTIEQMPPMFSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFI------RHEGNELELEIHCSKGTYIRT 182 +K GKKLYEYAR G EV R R IT++E + + E + CSKGTY+RT Sbjct: 121 VKVNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRT 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +GEKLG +H+ +L R A ++ +E ++ E + E V+ ++ + + Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENVQNG---------TVESIFI 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNG 267 +D S +P + + + KNG Sbjct: 232 SIDEALSKFPKMVVDEKQAEKIKNG 256 >UniRef50_A1AMM4 tRNA pseudouridine synthase B n=2 Tax=Desulfuromonadales RepID=A1AMM4_PELPD Length = 304 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 98/230 (42%), Positives = 141/230 (61%), Gaps = 5/230 (2%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+G ++DKP G+SS+D + +V+RI R GHTG LDP ATG+LP+ + +ATK +L Sbjct: 2 ISGFFVIDKPAGISSHDVVSRVRRILGTRRVGHTGTLDPFATGVLPVAVNDATKVIPFLD 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y+ + RLG TDT D G+I+ E + S E+ L F G I Q+P M+SA+ Sbjct: 62 EGVKCYQALLRLGVVTDTLDMTGRILAEGDYSSVSRERFLELLTRFCGVISQVPPMFSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G+ LY+ ARQGIEV R AR + ++ L + E L + CS+GTY+R++ DDLG Sbjct: 122 KRDGQPLYKLARQGIEVERRARQVEIHSLELLSFEPPLACLRVSCSRGTYVRSLADDLGA 181 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +LGCGA + LRR+A + + +TL L EQA++ + A LDP Sbjct: 182 ELGCGASLQELRRIASGPFHLSSAITLATL----EQAKEGGMSDALCLDP 227 >UniRef50_Q0AYI5 tRNA pseudouridine synthase B n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=TRUB_SYNWW Length = 299 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 163/294 (55%), Gaps = 17/294 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIY-NANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++G L ++KPQ M+S D ++K+K++ + GH G LDP+A G+LP+ +G T+ ++ Sbjct: 1 MHGFLNINKPQAMTSFDVIKKLKKVLPRKYKLGHLGTLDPMAEGVLPVAVGCGTRIIPFV 60 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D K Y LG +DT DA G I P Q+ L FRG Q+P MYSA+ Sbjct: 61 EDETKEYIATMTLGASSDTQDAWGVITYHTPRKIEPAQVEKVLALFRGKSRQVPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR----HEGNELELEIHCSKGTYIRTIID 185 ++GK+LYE ARQG+EV R+AR I ++EL + E +L L + CS+GTYIRT+ Sbjct: 121 HHEGKRLYELARQGLEVERKAREIEIFELELLNADWEQELPQLSLRVSCSRGTYIRTLCH 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G++LGCGA++ LRR + +E V+L+++ I E L L+P+D Sbjct: 181 DIGQELGCGAYLSSLRRSRSGCFKIEEAVSLDYI-----------IEKRENLSRALLPLD 229 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 P ++ P+++L NG + +G VR+ E G+ + + E ++ Sbjct: 230 YPINNLPLISLKSAELPAIINGRQISRTGKLASPRVRLYTPE-GQLLAIAEANN 282 >UniRef50_B8CW75 tRNA pseudouridine 55 synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW75_HALOH Length = 303 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 88/212 (41%), Positives = 140/212 (66%), Gaps = 2/212 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ + KP GM+S D + ++++Y+ +AGHTG LDP A+G+LP+CLG+ TK YL Sbjct: 4 VDGIISIIKPPGMTSFDVVAWIRKMYSVKKAGHTGTLDPAASGVLPVCLGKGTKIIPYLP 63 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 D K Y LG +TDT D++GQI+EE + + + L + F+G IEQ+P MYSA Sbjct: 64 DEVKGYVAEITLGVKTDTLDSEGQIIEENQKWESITDSHLNKVISDFQGVIEQVPPMYSA 123 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +KY+GK+LYE AR+G ++ RE R + + ++ + + +++L + CS GTYIR+I D+G Sbjct: 124 VKYKGKRLYELAREGKKIKREPRQVEIKKINILDIDLPKVKLFVLCSPGTYIRSIARDIG 183 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 EKLGCGA++ +L R + +E TL ++ Sbjct: 184 EKLGCGAYLSFLVRTRSGSFNLENSFTLSEIK 215 >UniRef50_B5YJI4 tRNA pseudouridine synthase B n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJI4_THEYD Length = 302 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 111/305 (36%), Positives = 174/305 (57%), Gaps = 9/305 (2%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N V++L+KP+G +S D + KVK+I +AGH G LDP+ATG+L +C+ EATK + +L+ Sbjct: 1 MNAVVVLNKPKGFTSQDTVTKVKKILKVKKAGHAGTLDPMATGILIVCINEATKITPFLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + +K Y A+ G TDT DA+G+IV EQ+ + L+ F G+I QIP MYSA+ Sbjct: 61 ELEKEYVFKAKFGISTDTYDAEGKIVRVVEDFKLEREQVESILEEFTGEIMQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GK L+E AR+G+E+ R+ + + ++ + E + + CSKGTY+R++ D+GE Sbjct: 121 KVGGKPLHELARKGVEIERKPKKVIIHSIKIESFEPPFVTFRVVCSKGTYVRSLCHDIGE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL--LMPMDSP 247 KL GAH++ L R + ++ VE + LE L+ L+ +A P + +D Sbjct: 181 KLRIGAHIVELTRTRIGEFRVEESIELEELKSLISNNLDS---SAFSFQPKKGIFSIDQA 237 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 P V + F NGNPV+ SG G V+V + GK +G+G + + P Sbjct: 238 LYFLPSVTMQDYIIPRFLNGNPVKIPSGIVPAGWVKVKD-TRGKILGIG-YGNGVIIKPE 295 Query: 307 RLVVE 311 R++ E Sbjct: 296 RIIWE 300 >UniRef50_Q0EZ77 TRNA pseudouridine synthase B n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ77_9PROT Length = 307 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 113/289 (39%), Positives = 157/289 (54%), Gaps = 26/289 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKF 65 I+GV+ LDKP G +S A+ + R+Y +AGH G LDPLATGMLPI LGEAT++ Sbjct: 2 ISGVVFLDKPYGWTSRQAVNAMIRLYTQPGEKRIKAGHAGTLDPLATGMLPILLGEATRY 61 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 ++ L +DK YRV L +TDT D +G++V + + AL F G IEQ+P Sbjct: 62 AEMGLSADKSYRVSFDLSYQTDTLDCEGEVVARFDGAVNQAAVQTALAAFTGLIEQVPPA 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YSA++ GK+ + AR+G V ARP+TV+ + + E + L++ CSKGTYIR++ Sbjct: 122 YSAIRIDGKRAHAMARKGEAVHIPARPVTVHAITLVAFEFPLVTLQVDCSKGTYIRSLAR 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G LG G V LRRL+ +P MVTLE L QA+ D ++P+ Sbjct: 182 DIGAALGMGGCVTALRRLSTGGWPEAMMVTLEQL-----QAQP---------DSCVLPLA 227 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVR---TSGAPLEG----LVRVTEGE 287 + P V L + F G ++ SGAP G VRV GE Sbjct: 228 QWLREMPGVTLEQDMASRFVQGQRIQLQAASGAPDPGDGQLPVRVFAGE 276 >UniRef50_A8RZ93 Putative uncharacterized protein n=8 Tax=Clostridiales RepID=A8RZ93_9CLOT Length = 320 Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 97/262 (37%), Positives = 146/262 (55%), Gaps = 12/262 (4%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++ + K G +S+D + +++ I + GHTG LDP A G+LP+CLG T+ L D Sbjct: 15 HGIINVYKEPGYTSHDVVARLRGILKQKKIGHTGTLDPAAEGVLPVCLGAGTRLCDMLTD 74 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEER---PVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y+ + LG TDT D G I+ E ++ + EQ+ A+ F+GD QIP MYSA Sbjct: 75 RSKTYQAVMLLGCETDTQDTTGTILAEDREGALSLAEEQVNEAVMGFKGDYAQIPPMYSA 134 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK GKKLYE AR G EV R R + + ++ R E + +E+ CSKGTYIRT+ D+G Sbjct: 135 LKVDGKKLYELARAGKEVERRPRAVQILDIKVSRIELPRVWMEVTCSKGTYIRTLCHDIG 194 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCG + +L R V ++ +E +TL+ L +L +QA ++ ++P++ Sbjct: 195 RLLGCGGCMEHLTRTRVDRFSIEDSLTLDQLEQLRDQAA---------VESCILPVEEAL 245 Query: 249 SDYPVVNLPLTSSVYFKNGNPV 270 YP + + NGNP Sbjct: 246 QSYPPLGCLPEADSLLHNGNPC 267 >UniRef50_A0LHM2 tRNA pseudouridine synthase B n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=TRUB_SYNFM Length = 306 Score = 180 bits (456), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 94/217 (43%), Positives = 140/217 (64%), Gaps = 3/217 (1%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 R ++ +G+L+LDKP+GM+S+ + +VKR+ +AGH G LDP ATG+L +C+ +AT+F+ Sbjct: 2 REKEPSGLLVLDKPEGMTSSTLVTRVKRLLGLRKAGHCGTLDPFATGVLLVCVNQATRFA 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRG-DIEQIPS 124 + L K YR ARLG TDT D G +V R V S +L A+ G ++++P Sbjct: 62 EQLTGQTKVYRFTARLGIETDTLDRTGTVVRTRDDVVPSERELLEAVRLHEGTQVQEVPR 121 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 Y+A+K QGK+LYE AR+GI+V R + ++ I + E+ LE CSKGTY+R + Sbjct: 122 -YAAVKVQGKRLYELARKGIDVELPRREVHIHRFDLISYRYPEVVLETKCSKGTYVRQLA 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 DLG +LGCGAHV++LRRLA + +ER +LE + + Sbjct: 181 ADLGRRLGCGAHVMHLRRLACGPFGLERASSLEQMHD 217 >UniRef50_A5UZQ6 tRNA pseudouridine synthase B n=5 Tax=Chloroflexaceae RepID=A5UZQ6_ROSS1 Length = 300 Score = 180 bits (456), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 98/262 (37%), Positives = 151/262 (57%), Gaps = 5/262 (1%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L +DKP GM+S+D + +++R+ R GH G LDP ATG+L + LG AT+ +Y+ Sbjct: 1 MHGFLNIDKPAGMTSHDVVARIRRLSGQRRVGHAGTLDPAATGVLVVALGGATRLIEYVQ 60 Query: 71 DSD-KRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 K+YR LG T T DADG+I+ P+ E + AL RG I Q P MY+A Sbjct: 61 HQTLKQYRATVCLGVTTTTDDADGEIIARHPLPPLDRETVERALAPLRGTIWQTPPMYAA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 L ++G++LYE AR G+ V R + + L + + L L++ C GTYIR + DLG Sbjct: 121 LHHEGRRLYELARAGVTVETPPRQVHIERLDLVAFDPPLLTLDVVCGSGTYIRALARDLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCGAH+ LRR AV + +E + LR L E+A+ + +P ++++ L+P D Sbjct: 181 AALGCGAHLAALRRTAVGTFRIEDALP---LRVLEEEAQAEALPTSDIVRRHLLPPDIAV 237 Query: 249 SDYPVVNLPLTSSVYFKNGNPV 270 +D+ V + S+ ++G P+ Sbjct: 238 ADWYAVQVDEASARRLRHGMPL 259 >UniRef50_D2RKW1 tRNA pseudouridine synthase B n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKW1_ACIFE Length = 297 Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 91/210 (43%), Positives = 133/210 (63%), Gaps = 1/210 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ + KP GM+S+D + +++I + + GH G LDPLA G+LP+ G AT+F +Y Sbjct: 1 MDGIFNVLKPPGMTSHDVVGALRKILHMKKIGHGGTLDPLAAGVLPVFTGMATRFLEYAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +K YR G +TDT D +G ++ E PV +AE++ AAL +FRG+ QIP MYSA+ Sbjct: 61 HEEKSYRAELTFGFQTDTGDTEGAVIAESPVRDLTAEEIEAALASFRGEGTQIPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G KLY+ ARQGIEV RE RPIT+YEL + + G L ++ CSKGT+IRT+ +DL Sbjct: 121 SVGGTKLYKLARQGIEVKREPRPITLYELEKVDYTGKTLVFDVTCSKGTFIRTLCEDLAA 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 KLG + +L R + +E TL+ + Sbjct: 181 KLGMKGTMSFLLRRRAGVFRLEDAHTLQEI 210 >UniRef50_B1YI60 tRNA pseudouridine synthase B n=2 Tax=Exiguobacterium RepID=B1YI60_EXIS2 Length = 302 Score = 180 bits (456), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 160/304 (52%), Gaps = 26/304 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GVL LDKP GM+S+D + +++R++ + GHTG LDP TG+LPICLG ATK ++++ D Sbjct: 5 GVLPLDKPAGMTSHDCVFRLRRLFQTKKVGHTGTLDPEVTGVLPICLGRATKLARFITDE 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQIPSMYSAL 129 KRY +G T T DA G+ V E PVT + +Q+ L G IEQ P YSA+ Sbjct: 65 GKRYVAEVTIGYATTTEDAHGETVRETPVTPASITEQQVDEILQQLTGQIEQTPPYYSAV 124 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYEL-----LFIRHEGNELELEIHCSKGTYIRTII 184 K GKKLYEYAR+GIEV R R + + L L ++EI C KGTYIRT+ Sbjct: 125 KVNGKKLYEYARKGIEVERPTRTVQIDTLERTSGLTFADGLCRFQIEIACGKGTYIRTLA 184 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR--ELVEQAEQQDIPAAELLDPLLM 242 ++GE+LG AH+ LRR + VTL L E VE+ Q ++ Sbjct: 185 VEIGEQLGYAAHMSELRRTSSGMMSETEAVTLATLEACETVEERMQ-----------YVL 233 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-- 300 P++ +P + + ++ NG + G P+E E G + + +D E Sbjct: 234 PIEQVIQKWPRLTVNAETAARVLNG--AKLPGIPVEFERFTVYNEEGIPLAIYRLDSEIN 291 Query: 301 -GRV 303 GRV Sbjct: 292 MGRV 295 >UniRef50_C6D2E9 tRNA pseudouridine synthase B n=2 Tax=Paenibacillus RepID=C6D2E9_PAESJ Length = 300 Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 110/300 (36%), Positives = 165/300 (55%), Gaps = 19/300 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ + KP G +S+D + KV+RI R GH G LDP+ TG+LP+CLG +T+ +YL Sbjct: 1 MDGIIAVWKPAGWTSHDVVAKVRRIVRMKRIGHAGTLDPMVTGVLPLCLGRSTRVVEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y + +LG TDT D G ++EE+ + + EQ+ L +F G+I+Q+P M+SA+ Sbjct: 61 ERPKAYEAVIQLGTATDTEDLTGTVLEEQTGIIVTREQVLQVLQSFVGEIDQVPPMFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYE--LLFIRHEGNE--LELEIHCSKGTYIRTIID 185 K GK+LYE AR+G V R++R +T+++ LL + + ++ + CSKGTYIRT+ Sbjct: 121 KVDGKRLYELAREGKTVERKSRKVTIHQIDLLNVDLDADKPRFAFSVICSKGTYIRTLCV 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G LG A + L R E+ VTLE L EL AA L+ ++P D Sbjct: 181 DIGRALGVPAAMAELTRTMSGGITREQCVTLEELEEL---------QAAGKLEEKMLPAD 231 Query: 246 SPASDYPVV--NLPLTSSVYFKNGNPVRTSGAPLE--GLVRVTEGENGKFIGMGEIDDEG 301 V N +T P A + LVR+ GEN FIG+ E DD+ Sbjct: 232 IAIDHLQRVQANAAVTEMALRGQKIPYNRMAASFDSSSLVRLY-GENDAFIGIFEADDQA 290 >UniRef50_Q2LWU1 tRNA pseudouridine synthase B n=1 Tax=Syntrophus aciditrophicus SB RepID=TRUB_SYNAS Length = 312 Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 91/209 (43%), Positives = 128/209 (61%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L+LDK G +S +Q+VKRI +AGH G LDPLATG+LP+CL EATK Q+L Sbjct: 1 MDGILILDKSPGKTSQKVVQEVKRILGVRKAGHAGTLDPLATGVLPLCLNEATKLVQFLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK YR LG T+T D +G+I + R ++ AL F G I Q P YSA+K Sbjct: 61 LDDKEYRATMLLGVTTETMDIEGRITDRREPEVDEVRIREALQFFTGPISQEPPRYSAVK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 ++G+ LY +AR+G+++ R + VY + + + CSKGTYIRT+ DLGE+ Sbjct: 121 FKGRPLYSWARKGVDIALPPRTVQVYSSILEEIALPYVTFRVACSKGTYIRTLCADLGER 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 LGCGA + LRRL + +E V+LE + Sbjct: 181 LGCGACMSVLRRLRCGCFTLETAVSLEDI 209 >UniRef50_A5GF89 tRNA pseudouridine synthase B n=7 Tax=Geobacter RepID=TRUB_GEOUR Length = 310 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 87/208 (41%), Positives = 128/208 (61%), Gaps = 1/208 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G +++DK GM+S+D + V+RI + GHTG LDP ATG+LP+ LGEATK +L Sbjct: 1 MDGFIVVDKSAGMTSHDVVSAVRRIAGQKKVGHTGTLDPFATGVLPVALGEATKAIPFLD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 +S K YR + +LG TDT D G+++ E + + L F G + Q+P M+SAL Sbjct: 61 ESIKEYRAVMKLGVATDTQDYTGKVLHESDWSHVTTSALNEICRMFVGKLSQVPPMFSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G LY+ ARQG EVPR+ R I +Y L+ E+ + CS+GTY+RT+ +D+G Sbjct: 121 KQNGVPLYKLARQGAEVPRQPREIEIYSLVIEAVNLPEVAFTVRCSRGTYVRTLANDIGG 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLE 217 KLGCGAH++ L R + + +TL+ Sbjct: 181 KLGCGAHLLQLHRSLSGPFSINNAITLD 208 >UniRef50_UPI00016C0EBC tRNA pseudouridine synthase B n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0EBC Length = 290 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 168/302 (55%), Gaps = 15/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ + K +G +S+D + K + I + GHTG LDP ATG+LPIC+GEATK YL Sbjct: 1 MDGIINIYKEKGFTSHDVVAKARGILRQKKIGHTGTLDPDATGVLPICIGEATKIVPYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D++K Y LG T T DA G++VEE V S EQ+ L TF G EQ P MYSA+K Sbjct: 61 DANKTYEAEVILGAYTTTEDASGEVVEEFSVEVSNEQVLDVLATFVGAYEQTPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIR-HEGNELELEIHCSKGTYIRTIIDDLGE 189 G++LYE ARQ I + R +R + + EL + + ++ + CSKGTY+RT+ D+G Sbjct: 121 INGQRLYELARQNIVIDRPSRMVEILELEQMSPLKDGRFKIRVVCSKGTYVRTLCTDIGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL CGAH+ L R V ++ +E+ VTL+ L +L AE+ +L+ ++ Sbjct: 181 KLKCGAHMGELTRTRVGEFDIEQSVTLKQLEKL--NAEE-----------ILISIEKMFE 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 YP V + + + + NGNP+ A RV + N FIG+ + E + + Sbjct: 228 QYPAVVVDQSYNKFLYNGNPLEVKIAAAGLFFRVYDYMN-HFIGLYKWSGEKLIVEKMFY 286 Query: 310 VE 311 E Sbjct: 287 KE 288 >UniRef50_C8P7Y2 tRNA pseudouridine synthase B n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P7Y2_9LACO Length = 317 Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 100/267 (37%), Positives = 152/267 (56%), Gaps = 17/267 (6%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + ++G++ L K +GM+S D + +++RI + GH+G LDP G+LPIC+G ATK +Y Sbjct: 17 QKMDGIIPLYKERGMTSFDCVSRLRRILKTRKIGHSGTLDPAVDGVLPICVGNATKAVEY 76 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMY 126 L+ S K Y+ +G+ T+T D DG++V + PV S EQ+ AA+ G I Q+P MY Sbjct: 77 LMQSGKIYQGELVIGRATETEDFDGRVVAQTPVPAPLSDEQVRAAMAKLTGKITQVPPMY 136 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIR------HEGNELELEIHCSKGTYI 180 SA+K GK+LYEYAR G V R AR +T+ E +R H+ + ++ CSKGTYI Sbjct: 137 SAVKVNGKRLYEYARAGETVERPARQVTITEFTLVRSHYDQEHQEQHVFFKVACSKGTYI 196 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT++ DL +LG + +L RLA + +++ ++L A+ Q A + + Sbjct: 197 RTLVVDLARQLGYPGAMKWLTRLASGGFTLDQTLSL---------ADIQTAVANQTIKRY 247 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNG 267 L P+D DYP V L +NG Sbjct: 248 LYPLDYALKDYPAVELTDQQWRAVQNG 274 >UniRef50_D1VSB0 tRNA pseudouridine synthase B n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB0_9FIRM Length = 293 Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 104/299 (34%), Positives = 173/299 (57%), Gaps = 24/299 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+LL++K +G++S+D + V++ N + GH G LDP+ATG+L I +G+ATK S Y++ Sbjct: 1 MDGILLINKKKGITSHDVISIVRKKLNIKKVGHCGTLDPMATGLLIILIGKATKLSDYIM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y +LG TD+ D G I+E + T ++L L +F G+++QIP MYSA+K Sbjct: 61 KNRKTYLAKVKLGLLTDSYDITGNILENQDFTVDKDKLIEVLKSFVGEVKQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHC--SKGTYIRTIIDDLG 188 GKKLYEYAR+G+EV R+ R + +Y + + G + E I+C S GTYIRT+ D+G Sbjct: 121 VNGKKLYEYARKGVEVKRKERLVKIYSMELLDFNGKD-EFVINCDVSSGTYIRTLAFDIG 179 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL--LDPLLMPMDS 246 KL ++ L+R ++S + + + ++ DI + +L L+ ++PM+ Sbjct: 180 RKLNTYGTLLELQRNSISNFNLNECLNID------------DIESIDLEELNNRIIPMEK 227 Query: 247 PASDYPVVNLPLTSSVYFK--NGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID-DEGR 302 ++ + P S Y K NG +T + + R+ + KFIG+G ++ D GR Sbjct: 228 ALLNFEKFSYP--SDFYDKLLNGIKFQTEKDFEDKIFRLYCRD--KFIGLGRMEVDNGR 282 >UniRef50_C6HXK4 tRNA pseudouridine synthase B n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HXK4_9BACT Length = 320 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 90/208 (43%), Positives = 128/208 (61%), Gaps = 2/208 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+LL+DKP G +S+D + +V+++ ++ GH G LDP+A+G+LP+ +GEATK S ++L Sbjct: 12 VSGMLLVDKPAGPTSHDIVHRVRKLTGIDKVGHGGTLDPMASGLLPLLVGEATKMSSFIL 71 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 DK Y LG TDT D+ G +V P S+ +L F G+ Q P MYSA Sbjct: 72 ADDKSYEFDLTLGATTDTDDSTGVVVSTHSVPEDLSSVRLRTVARDFEGERFQQPPMYSA 131 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K QG LY+ AR+G+ VPRE R I +Y L I E L +HCSKGTYIR + ++G Sbjct: 132 VKQQGVPLYKLARKGVTVPREPRRIEIYSLELIAVEPPVLTFRVHCSKGTYIRVLAREIG 191 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTL 216 E L GAH+ LRRL+V + + TL Sbjct: 192 EALSTGAHLSRLRRLSVGTFSLAEATTL 219 >UniRef50_D1N2Y9 tRNA pseudouridine synthase B n=2 Tax=Lentisphaerae RepID=D1N2Y9_9BACT Length = 254 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 94/217 (43%), Positives = 131/217 (60%), Gaps = 2/217 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVLL+DKP+ +S D + V+ +N + GH G LDP ATG+L + LG+ T+ S Sbjct: 16 SGVLLVDKPKEWTSFDVVNFVRARFNVPKVGHCGTLDPAATGLLVLVLGKFTQLSSKFSG 75 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y +LG TD+ D DG + E + + EQL A L F G+ Q P M SA+K Sbjct: 76 EDKIYEATLQLGLETDSCDLDGTVTAEHDWSGVTEEQLRATLAGFVGEQMQTPPMVSAVK 135 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYE ARQG+EV RE++PIT++ L R E + +HCSKGTY+RT+ D G+K Sbjct: 136 KDGKKLYELARQGVEVERESKPITIFSLDVTRCELPFCDFTLHCSKGTYVRTLCSDAGKK 195 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 LGCG + LRR ++ + VT++ L+ EQA+ Sbjct: 196 LGCGGTLAALRRTRSGQFSLADAVTVDTLKTF-EQAD 231 >UniRef50_D1PLN1 tRNA pseudouridine synthase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN1_9FIRM Length = 297 Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 102/287 (35%), Positives = 156/287 (54%), Gaps = 10/287 (3%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L +DKP G +S D L K++ + GH+G LDP+ATG+L + +G+AT + L+ Sbjct: 5 NGILPVDKPAGWTSFDVLAKLRGALGTRKLGHSGTLDPMATGVLAVFIGKATAAADRQLN 64 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y R GQRTDT D G ++E PVT E+L A L F G+ Q+P MYSA+K Sbjct: 65 HDKTYEATLRFGQRTDTGDITGTVLETAPVTIGEEELRAVLPRFMGEQMQLPPMYSAVKI 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+ LY+ AR+G V R RPITVY + ++ + + L I CSKGTYIR + +D+G+ Sbjct: 125 NGQPLYKAARKGQTVERTPRPITVYSIEYLGTPKPGDYTLRIACSKGTYIRVLAEDIGKA 184 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG A + LRR ++ + + TL + E+ + D ++P+++ + Sbjct: 185 LGVPATLAALRRTRAGEFEISQCHTLPDILAAAEKGTLTE-------DGWILPVETVFAP 237 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI 297 P + + + NG P A +G R + E G F+G+ + Sbjct: 238 LPTLTVNDGVKAHLFNGCPTSHYAAA-DGRYRAYDKE-GTFLGLAAV 282 >UniRef50_B0THR7 tRNA pseudouridine synthase B n=2 Tax=Heliobacteriaceae RepID=TRUB_HELMI Length = 306 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 92/216 (42%), Positives = 131/216 (60%), Gaps = 4/216 (1%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++ G L L KP GM+S+D + K +R+ R GH G LDP A G+LPI +G+AT+ + + Sbjct: 5 ELEGFLNLLKPPGMTSHDVVAKARRLLKEKRIGHLGTLDPDAAGVLPIAIGQATRLIELV 64 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSA 128 DK YR RLG TD+ DA G+IV+ V S + L FRG I Q P M SA Sbjct: 65 AGVDKAYRTQLRLGAVTDSQDASGRIVKTGAVPALSRDDWEETLRPFRGQILQTPPMVSA 124 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE---GNELELEIHCSKGTYIRTIID 185 + GK+LYEYARQGIEV R ARP+++ + + ++ E+ +++ CS GTYIRT+ Sbjct: 125 VSVGGKRLYEYARQGIEVERSARPVSISRIEIVHYDPATPEEIVIDVECSAGTYIRTLCH 184 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 D+G++LGCG H+ +L R + + +TLE L E Sbjct: 185 DIGQRLGCGGHMGWLIRTRSGLFSLRDSLTLESLAE 220 >UniRef50_UPI00016C5566 TruB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5566 Length = 286 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/304 (36%), Positives = 157/304 (51%), Gaps = 28/304 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIY-NANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +NG+L++DKP GM+S DA+ +V+R + + GHTG LDPLATG+L +C+G AT+ + Y+ Sbjct: 1 MNGLLVIDKPGGMTSRDAVNRVQRWFPKKTKIGHTGTLDPLATGVLVVCVGAATRLADYV 60 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y RLG + + DADG + + V + E + A+L F G IEQ+P SA Sbjct: 61 QAMGKTYASRFRLGATSTSDDADGTVTDTPGAVPPTGEAVEASLQRFVGVIEQLPPAVSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK G++ ++ RQG EV RP+ + + ++ ++E+ C KGTYIR+I DLG Sbjct: 121 LKVDGRRAHDLVRQGKEVTLAPRPVRIDAVRLTGYDWPFADVEVDCGKGTYIRSIARDLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP-----LLMP 243 LGCG V LRR V Y E VTL+ LDP LMP Sbjct: 181 AALGCGGMVQTLRRARVGCYLAEDAVTLD-------------------LDPGEVGKHLMP 221 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSG--APLEGLVRVTEGENGKFIGMGEIDDEG 301 M S S P V + F+ G V T+G +P G V + IG+G + G Sbjct: 222 MSSALSTLPAVRISAEVVTRFRQGQTVATAGEASPQPGEEVVVIDGFQEVIGIGAVLPNG 281 Query: 302 RVAP 305 V P Sbjct: 282 FVKP 285 >UniRef50_Q6MMS4 tRNA pseudouridine synthase B n=1 Tax=Bdellovibrio bacteriovorus RepID=TRUB_BDEBA Length = 308 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 146/259 (56%), Gaps = 10/259 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 NG+LL+DKP G+SS+D + +++RI + GH+G LDP+A+G++ + E TK SQY+L Sbjct: 7 FNGLLLVDKPSGISSHDVVARLRRILSTRAVGHSGTLDPMASGLMACLVNEGTKLSQYIL 66 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 + DK YR+ A+ G RTDT D G+ +E RP + E + + +G++E +YSA+ Sbjct: 67 EGDKGYRLRAQFGIRTDTLDTTGETLETRPTDHLTRELILSEALKLQGEMEVEVPIYSAI 126 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K QGKKLYEYAR EV + + +++ + + E +I CSKG+YIRT ID LG+ Sbjct: 127 KVQGKKLYEYARGEQEVTIPKKVMKFWDIEPVEIGSDWAEFDIKCSKGSYIRTWIDLLGK 186 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LGCGA + LRR S Y +++ TLE + V+ L P +PM+ Sbjct: 187 ALGCGAAMSGLRRTWSSPYKIDQAQTLEQIEASVKGGS---------LGPAFVPMELALP 237 Query: 250 DYPVVNLPLTSSVYFKNGN 268 + + V NG Sbjct: 238 QVKRIRIKGQDKVLLGNGQ 256 >UniRef50_Q2RJM2 tRNA pseudouridine synthase B n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=TRUB_MOOTA Length = 305 Score = 174 bits (440), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 104/303 (34%), Positives = 165/303 (54%), Gaps = 22/303 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G + + KP G++S+D +Q ++R+ R GH G LDPLA G+LP+ +G AT+ +YL Sbjct: 2 VMGFVNVLKPPGLTSHDVVQNLRRLLKVKRIGHGGTLDPLAAGVLPVAVGTATRLLEYLQ 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK YR LG +TDT D G+++ +P F+ + L AA F G I Q+P M SA+ Sbjct: 62 GGDKAYRAEFILGLKTDTQDLGGRVLARKPCPPFTEKDLQAATRPFTGTIRQVPPMVSAV 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN----ELELEIHCSKGTYIRTIID 185 YQG++LYE AR+G+EV R AR +T++E IR + ++I CS+GTYIRT+ Sbjct: 122 HYQGRRLYELAREGLEVERPARQVTIHEFRLIRAWPDGPYYRALIDITCSRGTYIRTLGA 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D G+ LG GA + +L R + + TLE + +++ E+ L+P Sbjct: 182 DWGDYLGVGATLAFLLRTRAGSFRLTDAWTLEEIAGAIDRGERT----------FLLPPA 231 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGA-PLEGL-----VRVTEGENGKFIGMGEIDD 299 + + PV+ +P + NG ++ PL L VR+ GE G+ + + ++ Sbjct: 232 AGLAHLPVIIVPGEFIRHVSNGVAIKGDVCRPLPSLREGDIVRLETGE-GQLLALARVEP 290 Query: 300 EGR 302 + R Sbjct: 291 DTR 293 >UniRef50_C0QUQ5 tRNA pseudouridine synthase B n=5 Tax=Aquificales RepID=C0QUQ5_PERMH Length = 293 Score = 174 bits (440), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 173/305 (56%), Gaps = 17/305 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKF 65 ++G+LL+DKP+ ++SN +QK+K+ + + GHTG LD A+G++ I +G+AT+ Sbjct: 1 MDGILLVDKPENITSNHLVQKIKKHFKQITGKEIKVGHTGTLDYFASGLMVITVGKATRL 60 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 ++Y DK Y LG+ TDT D G+++EE+ +QL + +F+ Q P Sbjct: 61 TEYFQGLDKEYIATGELGKITDTYDRQGRVIEEKECKIDEDQLKDIILSFKKRYLQTPPP 120 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YS+ + +GK+ Y+ A++GI+V + + +T+Y + ++ E +++HCS GTYIR+++ Sbjct: 121 YSSKRIEGKRAYQLAKKGIQVKLKPKEVTIYSIQILKIEMPFFTIKVHCSSGTYIRSLVK 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 ++G+K GCGA+V LRR V + VE + LE L + E QDI + L+ + Sbjct: 181 EIGDKAGCGAYVKSLRRTKVGIFSVENAIKLEELLRMTE----QDIESR------LIDIK 230 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + L F G + + ++GLV+V + +N +F+G+GEI + + P Sbjct: 231 DALYFFTEILLDPVFDERFIKGQRFKVPYS-IKGLVKVLD-KNKRFLGIGEIKENQILQP 288 Query: 306 RRLVV 310 ++ + Sbjct: 289 VKVFI 293 >UniRef50_Q1G9Q1 tRNA pseudouridine synthase B n=27 Tax=Lactobacillus RepID=TRUB_LACDA Length = 298 Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 103/270 (38%), Positives = 157/270 (58%), Gaps = 20/270 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 NG++++DK GM+S D + K++R+ + GH G LDP TG+LPI LG+ATK + + Sbjct: 2 FNGIIVIDKAAGMTSGDVVYKLRRLLKQKKIGHAGTLDPEVTGVLPIALGQATKLIELMH 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 + K Y LG TD+ D +G+I+ ER ++ S + + AA++ G+I Q P +YSA Sbjct: 62 ERPKAYVGEGMLGLATDSYDLEGKILAERALSQPVSDQAIKAAMEKLIGEIVQQPPIYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITV--YELL----FIRHEGNE-LELEIHCSKGTYIR 181 ++ GK+LYEYAR+GI V R R + V Y+L F +G + E+ CSKGTY+R Sbjct: 122 VRVNGKRLYEYAREGIPVERPKRTVQVFLYDLTAPSQFDPEKGRQTFTYEVECSKGTYVR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 ++++DLGE+LG A + LRR A S Y ++ VTLE L + ++ AE + Sbjct: 182 SLVNDLGEELGLPAVMTKLRRTASSGYKLQDAVTLEELADNLDHAED-----------YI 230 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVR 271 P+DS +DY V+L KNG ++ Sbjct: 231 QPIDSFFADYQQVDLDAALWQQVKNGAWIK 260 >UniRef50_Q04ED7 tRNA pseudouridine synthase B n=1 Tax=Oenococcus oeni PSU-1 RepID=TRUB_OENOB Length = 298 Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 106/277 (38%), Positives = 156/277 (56%), Gaps = 27/277 (9%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG++L+DKP G++S D + K+++I+ + GHTG LDP TG+L I LG+ATK YL + Sbjct: 3 NGIVLVDKPAGLTSFDVVAKLRKIFQQKQVGHTGTLDPSVTGLLVIVLGKATKLIDYLQE 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLA-----AALDTFRGDIEQIPSMY 126 + K+YR LG +TDT D DGQ+ E + F E +A AA D+F G +Q+P MY Sbjct: 63 NQKQYRGTLILGLKTDTQDMDGQVTE---MQFLKEAIADFKKKAAFDSFLGSSDQLPPMY 119 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELL------FIRHEGNE-LELEIHCSKGTY 179 SA+K GK LYE AR+G + R++R I V E F +G E + SKGTY Sbjct: 120 SAVKVGGKHLYELARKGETIERKSRKIKVMEFQQVGGSKFDASKGQEYINFVATVSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+I+D G KLG A ++ LRR+ Y V+ + LE + L + ++ I E L P Sbjct: 180 IRTLIEDFGAKLGLPATMMRLRRIEADGYDVKNSINLEEI--LASKTPRKFIIPMEKLLP 237 Query: 240 LLMPMDSPASDYPVVN-------LPLTSS---VYFKN 266 L + D+ ++ LP++ S +++ N Sbjct: 238 TLPKYSVGSDDWQLIKNGGWLKELPISVSPVKIFYNN 274 >UniRef50_D2MK32 tRNA pseudouridine synthase B n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK32_9BACT Length = 325 Score = 172 bits (437), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 106/296 (35%), Positives = 159/296 (53%), Gaps = 23/296 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVL + KP G +S+D + KV+R+ + GH G LDP ATG+LP+ LG+ T+ S +LL Sbjct: 19 HGVLNVSKPAGWTSHDVVAKVRRLLQVPKVGHAGTLDPAATGVLPVLLGKGTRLSAFLLH 78 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y + RLGQ T T DA G IV + PV E + A+ F G+ +Q+P MYSA+K Sbjct: 79 WDKEYEAVLRLGQETTTQDATGAIVRDCPVPELRPETVHEAVAQFHGEQQQVPPMYSAVK 138 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+ LY+ AR G + R +RP+T+Y + ++ L + CSKGTYIRT+ D+G Sbjct: 139 IGGQPLYKAARAGKTLDRPSRPVTIYHIEIRALALPDVTLRVRCSKGTYIRTLCADIGRV 198 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG G H+ L R V + ++R +L+ + + + P A + +D + Sbjct: 199 LGVGGHLSRLIRSRVGPFHLDRAWSLDDIGRVDDLFGH---PGA------FLNLDEALAH 249 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGA----------PLEGLVRVTEGENGKFIGMGE 296 P V + NG PV SGA P+E L RV + + G+ + +G+ Sbjct: 250 LPAVVVDPAMVEKVMNGAPV--SGATLWSEDHRETPVETLFRVKD-DMGRLLALGK 302 >UniRef50_A9KNW1 tRNA pseudouridine synthase B n=6 Tax=Clostridiales RepID=TRUB_CLOPH Length = 307 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 162/309 (52%), Gaps = 32/309 (10%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + K +G +S D K++ I + GHTG LDP A G+LP+C+G ATK L Sbjct: 1 MNGIINVYKEKGFTSFDVCAKLRGILKQKKIGHTGTLDPDAEGVLPVCVGNATKLCDLLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK Y + LG TDT D G+++E R VT + +++ ++ F +QIP MYSA+K Sbjct: 61 DKDKVYEAVLTLGIITDTEDMTGEVLERRLVTATYDRVLEVVEQFTRTYDQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLF-----------IRHEGNELELEIHCSKGTY 179 G+KLYE ARQG + R+ R +T++ + I H E+ + + CSKGTY Sbjct: 121 VNGQKLYELARQGKVIERKPRTVTIHAIDILGVTPLEEQPEIVH---EVRMRVSCSKGTY 177 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR++ D+GE L CG + L R VS + +E + L + E V+ + L+ Sbjct: 178 IRSLCRDIGEALQCGGCMKSLIRTQVSIFTLENTLRLAEIEECVKN---------QTLEQ 228 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL--------VRVTEGENGKF 291 +LMP+D P V + S + NGN + E + +RV + E+ F Sbjct: 229 VLMPVDKLFLSMPKVVVKKESCKFLYNGNQLVEDNFTWEKVSDQINIDKIRVYDSED-VF 287 Query: 292 IGMGEIDDE 300 G+ E D++ Sbjct: 288 TGIYEYDEK 296 >UniRef50_C7N8V4 tRNA pseudouridine synthase B n=1 Tax=Leptotrichia buccalis C-1013-b RepID=C7N8V4_LEPBD Length = 355 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 165/295 (55%), Gaps = 26/295 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++LL+K +G+SS A+ ++KR A +AGH G LDP+A G++ + + +ATKFS L+ Sbjct: 8 DGIILLNKSKGISSFKAIDELKRKIKAKKAGHAGTLDPMAEGLMVVMINDATKFSGDLMK 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y V LG +TDT D++G+++EE + S Q+ + +F+G I+Q+P MYSA+ Sbjct: 68 KDKEYYVEMELGYKTDTYDSEGKVIEEYKSEIELSDSQIIRTIHSFKGRIKQVPPMYSAI 127 Query: 130 KYQGKKLYEYARQGIEV---PREARPITVYELLFIRHEGNELELEI----HCSKGTYIRT 182 K +G+KLY+ AR+GIE+ PR+ + +Y++ R + N ++I H S GTYIR+ Sbjct: 128 KVEGQKLYDLARKGIEIERMPRDVEIMNIYKIKIHRPKENSSRIKISFYAHVSSGTYIRS 187 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH-------LRELVEQAEQQD----- 230 ++ D+GEKL A + L R + + +E V+LE L+ELVE+ + + Sbjct: 188 LVHDIGEKLKVFATMTKLVRTKIGRLSIEDAVSLEEVQSEIGKLKELVEEKRENESFWAT 247 Query: 231 -----IPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 I A ++ + + DY +N+ KNG V + E + Sbjct: 248 KSDAAIRAEKIREIVCFVEIEYILDYYGINVSNEKYGKLKNGMTVIDTFKKFENI 302 >UniRef50_C3RL16 tRNA pseudouridine synthase B n=4 Tax=Bacteria RepID=C3RL16_9MOLU Length = 283 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 131/230 (56%), Gaps = 5/230 (2%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++L++KP GM+S+D + K++RI + GH G LDP ATG+L +C+ +ATK Q+L Sbjct: 4 MDGIILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLT 63 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TDT DA G+I+E + ++ A + F G EQ P +YSA+ Sbjct: 64 SESKEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAI 123 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYEYAR G +V R +TV L ++ E N ++ ++ CSKGTYIR++ DL + Sbjct: 124 KVNGKKLYEYARAGEQVEVPTRSVTVNHLEILQIENNLIKFKVGCSKGTYIRSLCYDLAK 183 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 LG H+ L R + +E TLE +E E + E L+ Sbjct: 184 ALGYPGHMKDLIRTKSGNFSLENCFTLEQ----IENGEYTTVSLEEALNS 229 >UniRef50_C6P7U8 tRNA pseudouridine synthase B n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P7U8_CLOTS Length = 289 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 101/302 (33%), Positives = 163/302 (53%), Gaps = 20/302 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP GM+S+D + +++ +N + GH G LDP A G+LPIC+G+ATK SQY++ Sbjct: 1 MDGFLNVLKPPGMTSHDVVSFLRKKFNIKKIGHLGTLDPGAAGVLPICIGKATKLSQYVV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR G TD+ D G I PV F+ +++ L F+GDI Q+P +YSA Sbjct: 61 SQSKTYRAEITFGFSTDSIDKFGNITNATPVKIFTIDRIQEVLTKFKGDILQVPPIYSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE-GNELELEIHCSKGTYIRTIIDDLG 188 K GKKLYEYAR+G + +A PI +Y++ + ++ + +I CSKGTYIR ++ D+ Sbjct: 121 KINGKKLYEYAREGKSIEIKASPICIYDIKLVSYDIPYRIMFDIKCSKGTYIRALVRDVC 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +KL ++ L R++V + +E TLE ++ + I + +L P Sbjct: 181 DKLNIAGYMSMLIRISVGPFSLENSYTLEDIK----TDKYNMIEMSNVL---------PF 227 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 D + N ++ G P+ + + V++ +N FIG+G++D R Sbjct: 228 PDVYLNNFDYKKIIH---GRPIENNYLDVNSNFVKLYNPDN-LFIGIGKVDSSKIYVERL 283 Query: 308 LV 309 LV Sbjct: 284 LV 285 >UniRef50_A9AV52 tRNA pseudouridine synthase B n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AV52_HERA2 Length = 291 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 88/211 (41%), Positives = 130/211 (61%), Gaps = 2/211 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L +DKPQG++S D ++ VKR R GH G LDP+ATG+LPI LG AT+ +YLL Sbjct: 2 LHGFLNIDKPQGITSTDVVRVVKRNARQKRVGHGGTLDPMATGVLPIALGNATRLLEYLL 61 Query: 71 DSDKR-YRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 + +++ Y RLG TD+ D +G ++ E P+ + + L FRG I Q+P Y+A Sbjct: 62 EEERKAYTATLRLGITTDSDDVEGAVIAEAPIPPLDPALIESVLSQFRGAINQVPPQYAA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 ++ GK++YEYAR+G + ARPIT+ +L + + +L + + CSKGTYIR I D+G Sbjct: 122 IRVDGKRMYEYAREGKHIELPARPITIEQLDLLAWDAQQLTIAVDCSKGTYIRAIARDIG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 LGCGAH+ LRR + + + L L Sbjct: 182 ALLGCGAHLTALRRTRAGAFDLSNSIGLAEL 212 >UniRef50_A4J5W9 tRNA pseudouridine synthase B n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5W9_DESRM Length = 310 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 162/286 (56%), Gaps = 22/286 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+ + KP GM+S+D + V+R+ + GHTG LDP A+G+LP+C+G+AT+ ++++ Sbjct: 1 MDGVINILKPPGMTSHDVVFFVRRVTGVKKCGHTGTLDPGASGVLPVCVGKATRLARFVT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 D DK YR LG T + DA G ++ + + ++ L F+G+I+Q P M SA+ Sbjct: 61 DGDKTYRAEITLGIETSSQDAFGNVISRIDASAIKLDDFSSELRKFQGEIKQTPPMASAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE-----GNELELEIHCSKGTYIRTII 184 K +GKKLYE R+GI V R +T+Y++ + + ++ CSKGTY+RT+ Sbjct: 121 KVKGKKLYELEREGIIVDVPTRTVTIYQVNIVDSWDWGTPNPRVLFDVACSKGTYVRTLC 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+G++LGCGA++ +L R V+ + + TLE + L ++++ L+ ++PM Sbjct: 181 SDIGKELGCGAYMSFLLRSRVAAFGLHNAYTLEEIAALADKSQ---------LESAVIPM 231 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL-------EGLVRV 283 P+V + ++ +G + +G + EGLV+V Sbjct: 232 AKAVQHLPIVEIHPSAQKSVCSGATLYPAGVRVGLEYLKPEGLVQV 277 >UniRef50_C2KV13 tRNA pseudouridine 55 synthase n=6 Tax=Bacteria RepID=C2KV13_9FIRM Length = 531 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 87/212 (41%), Positives = 132/212 (62%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ ++K +GM+S D L+ ++RI + GHTG LDP+A G+L +C+G+ATK+ L+ Sbjct: 1 MDGIINVNKEKGMTSFDVLRALRRILREKKMGHTGTLDPMAEGVLLVCVGKATKYVDALM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y+ LG TDT D+ G+I+ E V+ S E + L F G EQIP MYSA K Sbjct: 61 AKEKIYQAELTLGIETDTEDSTGKILSEEEVSISKEDIEKILPRFLGKQEQIPPMYSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +GKKLYE AR+G V R+ I ++ L + ++ +L IHCSKGTYIRT+ D+GE Sbjct: 121 LEGKKLYELAREGKTVERKPSQIEIFALEILSYDCPKLRFRIHCSKGTYIRTLCKDIGEA 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLREL 222 LG A + L R V ++ ++ +L + +L Sbjct: 181 LGTKACMSALLREQVGEFSLKNSFSLSEIEKL 212 >UniRef50_Q3ZXU5 tRNA pseudouridine synthase B n=5 Tax=Dehalococcoides RepID=TRUB_DEHSC Length = 300 Score = 170 bits (431), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 163/304 (53%), Gaps = 17/304 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L ++KP G++S D + KV+RIY+ R GH G LDP ATG++P+ LG +T+ +YL Sbjct: 1 MDGILNINKPFGITSFDVVAKVRRIYSQKRVGHGGTLDPYATGVIPVFLGRSTRLIEYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TD+ D++G+I + + + E + L F+G+I QIP MYSA+ Sbjct: 61 SVSKTYLAEIELGVETDSYDSEGEITFRKTCDYVTREMIYKTLMDFQGEIIQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K++G +LY ARQGIEV R R T+Y + + + L + I C GTYIR++ DLG Sbjct: 121 KHRGMRLYNLARQGIEVERIPRVATIYGIELLNYTSPVLRVRIECGHGTYIRSLAFDLGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL---LDPLLMPMDS 246 KLGCGA++ L R A ++ L + D+ AA+ L +L+P+++ Sbjct: 181 KLGCGAYLKSLVREAYGQF------------NLANSLDFADLEAAKCDGKLAGILLPLET 228 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 P V+L + NG + V V EN F+ + + + +G P Sbjct: 229 AIGHLPRVSLDEKNITRLVNGLEITLDRIDKPEAVAVYNAEN-SFVAIIQPETDGTWHPA 287 Query: 307 RLVV 310 ++ + Sbjct: 288 KVFI 291 >UniRef50_B3WER2 tRNA pseudouridine synthase B n=9 Tax=Lactobacillus RepID=TRUB_LACCB Length = 306 Score = 170 bits (431), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 99/261 (37%), Positives = 148/261 (56%), Gaps = 18/261 (6%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 +G +NG+L L KP GM+S DA+ ++I + GH+G LDP G+LP+ +G TK Sbjct: 2 KGTAMNGILPLYKPTGMTSADAVYHARKILGIKKIGHSGTLDPNVDGVLPLAIGAGTKAV 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPS 124 L+ S K Y LG T T D DG++V++ P+T F+A+QL AAL + G+I QIP Sbjct: 62 PQLMASGKVYTGEITLGFATTTEDLDGEVVDKTPLTQPFTADQLDAALTAWTGNITQIPP 121 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYEL------LFIRHEGNE-LELEIHCSKG 177 M+SA+K G++LYEYAR G V R R TV + +F +G + E+H SKG Sbjct: 122 MFSAVKVNGRRLYEYARAGETVKRPERQATVSQFTRTDEPVFSATDGTQRFRFEVHVSKG 181 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIRT+ D+G+ LG A + L R+ + +++ V++E L+ AA L Sbjct: 182 TYIRTLAVDVGKTLGVAAVMSQLTRVKSGGFTLKQAVSIEQLKAHA---------AAGTL 232 Query: 238 DPLLMPMDSPASDYPVVNLPL 258 ++ P+D +D P V+L + Sbjct: 233 ADVIQPIDIAFADLPQVDLTV 253 >UniRef50_Q67P83 tRNA pseudouridine synthase B n=3 Tax=Bacteria RepID=TRUB_SYMTH Length = 299 Score = 169 bits (429), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 135/233 (57%), Gaps = 7/233 (3%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +++GVL L KP GM+S+D + V+R +AGHTG LDP G+LP+C+G AT+ ++Y+ Sbjct: 11 EVDGVLNLLKPPGMTSHDVVAFVRRALGVKKAGHTGTLDPGVAGVLPVCVGRATRLAEYI 70 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 SDK YR G TDT D G++V E + + +A AL F G IEQ+P M SA Sbjct: 71 AGSDKAYRAEITFGVATDTQDGFGEVVAEADASHLTRGDVAYALTRFHGPIEQVPPMVSA 130 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE---LELEIHCSKGTYIRTIID 185 +K GK+LYE AR+G+EV RE R + ++ L + +++ CSKGTY+RT+ Sbjct: 131 VKVGGKRLYELARKGVEVEREPRRVFIHRLQLLDFRPGPRPVAYIDVVCSKGTYVRTLAH 190 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 DLG L GAH+ YL R + + + TLE EL + PAA L D Sbjct: 191 DLGRFLQVGAHLSYLVRTRSGPFVLAQAATLE---ELAAGKARLLPPAAALGD 240 >UniRef50_UPI000178873D tRNA pseudouridine synthase B n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178873D Length = 303 Score = 169 bits (429), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 138/240 (57%), Gaps = 14/240 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G+L + KP G +S+D + KV+ + R GHTG LDP TG+LP+CLG AT+ +YL Sbjct: 4 LEGILAVHKPAGWTSHDVVAKVRGMVRLKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQ 63 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y + RLG TDT D G +VE V + ++ AL +FRG I Q+P MYSA+ Sbjct: 64 ELPKEYHAVLRLGYSTDTEDITGNVVETADEVRVTRDEALEALQSFRGQISQVPPMYSAV 123 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIID 185 K GK+LYE AR+G V R++R +T++E+ E E+ + CSKGTYIRT+ Sbjct: 124 KINGKRLYELAREGKTVERKSRTVTIHEIEMTDFDAEGEYTEISFRVLCSKGTYIRTLCV 183 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G KLG + ++ L R + + +TLE + + ++ E L L+P+D Sbjct: 184 DIGRKLGLPSVMVKLVRTISAGITEAQCLTLEQIEQFMKD---------ETLQTRLIPVD 234 >UniRef50_Q9Z5I4 tRNA pseudouridine synthase B n=3 Tax=Mycobacterium RepID=TRUB_MYCLE Length = 320 Score = 169 bits (429), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 110/315 (34%), Positives = 173/315 (54%), Gaps = 38/315 (12%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP GM+S+D + + +RI+ R GH G LDP+ATG+L + + ATK L + Sbjct: 13 GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72 Query: 73 DKRYRVIARLGQRTDTSDADG---QIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y RLGQ T T DA+G Q V R VT E +A A+ RGDI+Q+PS SA+ Sbjct: 73 SKEYVATIRLGQTTSTEDAEGELLQCVSARHVT--DEAIATAIGRLRGDIKQVPSAVSAI 130 Query: 130 KYQGKKLYEYARQGIEVPREARPITV--YELLFIR-------HEGNELELEIHCSKGTYI 180 K G++ Y R+G V +ARP+ + +E+L +R + +L++E+ CS GTYI Sbjct: 131 KVDGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYI 190 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + DLG+ G G H+ LRR V ++ +++ +LE L EL + D L Sbjct: 191 RALARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLDETC------L 244 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 LM +P +L ++ NG P+ ++G ++G+ ++ +G+ I + + DE Sbjct: 245 LM--------FPRRDLTVSEVEATSNGRPISSAG--IDGIYAASDA-DGRVIAL--LRDE 291 Query: 301 GRVAPR--RLVVEYP 313 G PR +VV +P Sbjct: 292 G---PRTKSVVVLHP 303 >UniRef50_B9XFC5 tRNA pseudouridine synthase B n=1 Tax=bacterium Ellin514 RepID=B9XFC5_9BACT Length = 236 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 131/228 (57%), Gaps = 2/228 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +G LL+DKP G +S+D + ++R + + GH G LDP ATG+L I LG TK S+ L+ Sbjct: 7 FDGALLIDKPVGYTSHDVVDAIRRRFQIKKVGHCGTLDPNATGLLIIVLGRGTKLSERLM 66 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 SDK Y + G+ TD+ DADG++V PV + +L F GD Q+P M SA+ Sbjct: 67 SSDKVYEGTIKFGETTDSYDADGELVTSLPVPPMTLGELNETAAAFVGDQMQVPPMVSAI 126 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G LY+ AR+G+EV RE R I +Y F + + +KGTY+R++ DLG+ Sbjct: 127 KKGGVPLYKLARKGVEVEREPRFIHIYNFRFAEYNEPIGRFRVAATKGTYVRSLAHDLGQ 186 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLREL-VEQAEQQDIPAAEL 236 KLGCG H+ LRR K+ V + L+ EL + E++ IP +L Sbjct: 187 KLGCGGHLATLRRTVSGKFDVANAIRLDQALELSAAELEKRVIPFLKL 234 >UniRef50_A9IMS8 tRNA pseudouridine synthase B n=3 Tax=Bartonella RepID=TRUB_BART1 Length = 320 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 138/226 (61%), Gaps = 4/226 (1%) Query: 1 MSRPRRR-GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R R++ GR ++G ++ DKP+GM S +A+ K+K +++A +AGH G LDPLA+G+LPI L Sbjct: 1 MARQRKKKGRPVSGWVVFDKPKGMKSTEAVSKIKWLFHAQKAGHAGTLDPLASGLLPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 GEATK Y++ K YR GQ T D +G+I + + E++ A L + G I Sbjct: 61 GEATKTVPYVMQGKKTYRFHIAWGQERSTDDLEGEITKTSLKRPTQEEILALLPQYTGII 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQG--IEVPREARPITVYELLFIRHEGNELELEIHCSKG 177 Q P +SA+K G + Y+ AR+G IE+P I ++L+ + + + EI C KG Sbjct: 121 LQTPPQFSAIKIAGNRAYDLAREGEVIEIPPREVEIETFKLVETPTKEHSV-FEITCGKG 179 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELV 223 TY+R++ D+G LGC H+ LRR+AV+ + E +VT + L+ + Sbjct: 180 TYVRSLARDMGRDLGCYGHIADLRRIAVAPFCEEDLVTWDELKAAI 225 >UniRef50_D1CFW9 tRNA pseudouridine synthase B n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFW9_THET1 Length = 301 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 158/302 (52%), Gaps = 15/302 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 + R + +NG ++++KP G++S + ++K++++A R GH G LDP ATG+LPI LG Sbjct: 2 IDRKNQSKEFLNGFIVINKPLGVTSQWVVNRIKKLFSARRVGHVGTLDPFATGVLPIALG 61 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 +A + ++ + K Y G +T T D +G I+ + + S + +A L F G IE Sbjct: 62 KANRLAEVIHSQPKSYVAELSFGFKTSTGDLEGDIIAQSDIIPSPKDIAEILPEFIGQIE 121 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q P YSA+K +G++ YE ARQG E+ R + +Y L + L+L I CS GTYI Sbjct: 122 QTPPKYSAIKVEGRRAYELARQGQELTLPTRKVEIYSLEALEFRACTLKLAISCSSGTYI 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP- 239 R++ +D+ E+LG ++ L R +V + +E +T+E L + + L P Sbjct: 182 RSLAEDIAERLGAYGYLSNLVRTSVGAFSIESSITIEELESV-----------GDYLQPA 230 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE--GLVRVTEGENGKFIGMGEI 297 L+ P D + P V L NG V+ + E LVR+ NG+ +G+ E Sbjct: 231 LIHPPDDALTHLPAVMLDERDVQRISNGATVKMAHISEEPIPLVRIYSA-NGEIVGLAES 289 Query: 298 DD 299 D Sbjct: 290 RD 291 >UniRef50_C0WBC5 tRNA pseudouridine synthase B n=1 Tax=Acidaminococcus sp. D21 RepID=C0WBC5_9FIRM Length = 288 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 84/212 (39%), Positives = 129/212 (60%), Gaps = 1/212 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ + KP GM+S+D + +++I + GH G LDP+A G+LP+ G+AT+F +Y Sbjct: 1 MDGIFNVLKPPGMTSHDVVGAMRKILQMKKIGHAGTLDPMAAGVLPVFTGQATRFLEYAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR G RTDT D +G+++ E PV +L L +F G+ Q+P MYSA+ Sbjct: 61 HDRKTYRAELTFGFRTDTGDLEGKVLAESPVRDLDLAELKETLQSFVGEGMQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 GKKLY+ ARQGI V RE RPIT+++L + + L E+ CSKGT+IRT+ +D+ + Sbjct: 121 SVGGKKLYKLARQGIVVEREPRPITIHDLSLLTYRKKTLLFEVTCSKGTFIRTLCEDIAK 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 KL + +L R V + +E TLE +++ Sbjct: 181 KLAMEGTMSFLLRTKVGDFTLENAHTLEEIQQ 212 >UniRef50_Q4L5X4 tRNA pseudouridine synthase B n=68 Tax=Bacilli RepID=TRUB_STAHJ Length = 305 Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 145/253 (57%), Gaps = 21/253 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L + K +G++S+D + K+++I + GHTG LDP +G+LP+C+G AT+ S Y++D Sbjct: 3 NGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVSGVLPVCIGTATRVSDYVMD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA---EQLAAALDTFRGDIEQIPSMYSA 128 K Y LG+ T T D G+++++ V +A ++ A L F G IEQ+P MYS+ Sbjct: 63 MGKSYNATITLGESTTTEDQTGEVIDKIDVQANAININEVDAVLKQFEGIIEQVPPMYSS 122 Query: 129 LKYQGKKLYEYARQGIEVPREARPITV------YELLFIRHEGN-ELELEIHCSKGTYIR 181 +K GKKLYEYAR+G V R R + + EL F +G +E+ C KGTYIR Sbjct: 123 VKVNGKKLYEYARKGETVERPIRKVNIDSIARTSELQF--EDGKCHFNIEVKCGKGTYIR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G++LG AH+ L R+ + ++ +TL+ + +L EQ + L P L Sbjct: 181 TLATDIGKQLGYPAHMSLLTRINSGGFDIKDSITLDQISQLHEQ---------DTLQPHL 231 Query: 242 MPMDSPASDYPVV 254 P++ P + Sbjct: 232 FPLEYGLKSLPKI 244 >UniRef50_UPI000185BE2E tRNA pseudouridine synthase B n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BE2E Length = 328 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 89/250 (35%), Positives = 147/250 (58%), Gaps = 17/250 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++++DKPQG +S+D + K++RI+ + GH+G LDP+ATG+L + +G T+F ++ Sbjct: 10 SGIVIVDKPQGWTSHDVVGKLRRIFRTKKVGHSGTLDPMATGVLVLGIGRGTRFLPHVHA 69 Query: 72 SDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K YR RLG T T DA+G+++ E + + E + + F G I Q P+ SA+K Sbjct: 70 DTKSYRATIRLGAATLTDDAEGELLSESSAASVTDEMIREKITDFTGTIMQKPAAVSAVK 129 Query: 131 YQGKKLYEYARQGIEVPREARPITV--YELLFIRHEGN--------ELELEIHCSKGTYI 180 G + YE R+G +V ARP+T+ YE+L IRH+ + ++++E+ CS GT+I Sbjct: 130 IDGVRAYERIRRGEKVDIPARPVTITRYEVLDIRHDSDTSRPGECIDIDVEVDCSAGTFI 189 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + DLG+ LG G H+ LRR A + ++ +T++ L EQ + + AE+ P+ Sbjct: 190 RALARDLGDALGVGGHLTALRRTAAGVFTIDEALTIDELTAKAEQFDTANPEIAEMRRPI 249 Query: 241 ------LMPM 244 L+PM Sbjct: 250 PDRAASLLPM 259 >UniRef50_B6BVJ8 tRNA pseudouridine synthase B n=1 Tax=beta proteobacterium KB13 RepID=B6BVJ8_9PROT Length = 298 Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 168/309 (54%), Gaps = 26/309 (8%) Query: 8 GRDIN--GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKF 65 G D+N G + + KP+G SSN L K+K + +AGH G LDP ATG++PI GEATKF Sbjct: 4 GLDLNDSGYISVIKPKGWSSNQLLSKLKWLLQIKKAGHGGTLDPFATGIVPIFFGEATKF 63 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDT----FRGDIEQ 121 S +L+S+K Y +LG + T D +G+++++ +F+ E+L + L+ F G Q Sbjct: 64 SNRVLESNKEYIAELKLGFESSTGDTEGELLKDD--SFNEEKLPSNLENILNEFLGIQRQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 P YSALKY GK YEYAR GIE+P + R I ++ + + +++ ++ CSKGTYIR Sbjct: 122 TPPKYSALKYNGKPYYEYARAGIEIPIKTREIEIFSIDLVNFTNHQITFQVSCSKGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLREL-VEQAEQQDIPAAELLDPL 240 T+ +D+ +K+G ++ L R+ V K +++ + EL +E+ ++ P +LL Sbjct: 182 TLGEDIAKKIGTKGYLTNLERIRVGKIKKIDSFSVDQIEELSIEERKKLLKPIYQLL--- 238 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 + P + L + NG + + E L+ + FIG+G I D Sbjct: 239 ---------ELPKIELNNNDTKNILNGQNLDIAIEAGEFLLFFEK----TFIGIG-ISDG 284 Query: 301 GRVAPRRLV 309 + P RL+ Sbjct: 285 EMIKPVRLI 293 >UniRef50_Q5WFU5 tRNA pseudouridine synthase B n=2 Tax=Bacillaceae RepID=TRUB_BACSK Length = 302 Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 87/218 (39%), Positives = 127/218 (58%), Gaps = 7/218 (3%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 G+++LDKP+G +S+D + ++++ + + GHTG LDP G+LPIC+G+ATK +Y+ D Sbjct: 4 TGIVVLDKPKGWTSHDCVHQMRKWFQTRKVGHTGTLDPEVDGVLPICIGKATKVVKYMSD 63 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y G T T DA G++VEE+ V F+ ++ A L F G IEQ P YSA+ Sbjct: 64 YDKTYIGEVTFGVATTTEDAHGEVVEEKRVNKPFTRTEIEALLQAFIGKIEQTPPYYSAV 123 Query: 130 KYQGKKLYEYARQGIEVPR-----EARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 K GK+LYEYAR GIEV R E + +T+ E+ + + C+KGTYIRT+ Sbjct: 124 KVNGKRLYEYARAGIEVERPTRTVEIKALTLTEITTAKPGCFSFAFSVTCTKGTYIRTLA 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLREL 222 D+G+K G AH+ L R A + + L E+ Sbjct: 184 VDIGKKAGYPAHMSKLTRTASGPFTQADAIPLSAFAEM 221 >UniRef50_Q1WUF2 tRNA pseudouridine synthase B n=28 Tax=Firmicutes RepID=TRUB_LACS1 Length = 302 Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 98/266 (36%), Positives = 151/266 (56%), Gaps = 18/266 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L L K +GM+SNDA+ K ++I+ + GH+G LDP G+LPIC+G+ATK YL+ Sbjct: 1 MDGILPLYKERGMTSNDAVIKCRKIFKTRKIGHSGTLDPEVDGVLPICVGKATKVVNYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 DS K Y+ LG T T D +G+++ + ++ FS E++ L +F GDI Q+P +YSA Sbjct: 61 DSGKVYKGEITLGFATTTEDLEGEVISKVKLSEPFSDEKINEILSSFIGDIIQVPPIYSA 120 Query: 129 LKYQGKKLYEYARQG--IEVPREARPITVYELL----FIRHEGNE-LELEIHCSKGTYIR 181 +K GKKLYEYAR G +++P I ++ + F + +G + + E+ C KGTY+R Sbjct: 121 IKVNGKKLYEYARAGEKVDIPERRVHIEYFKQIFPSKFDKEKGQQTIYFEVGCGKGTYVR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G+KLG A + L RL + + +L L +L + + L L Sbjct: 181 TLAVDVGKKLGVPAVMSDLTRLKSGGFQIGMAKSLSQLEKLAHENK---------LSESL 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNG 267 P+D D P +L L KNG Sbjct: 232 YPIDYAVKDLPRYDLKLEQWRIVKNG 257 >UniRef50_Q6AJY7 tRNA pseudouridine synthase B n=1 Tax=Desulfotalea psychrophila RepID=TRUB_DESPS Length = 246 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 91/210 (43%), Positives = 127/210 (60%), Gaps = 7/210 (3%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQYLLD 71 G+ L+DKP G++S + +V+RI + GH G LDP ATG+L +C G ATK +D Sbjct: 9 GIFLIDKPVGITSFGVVSRVRRILGMKKVGHAGTLDPFATGLLVVCAGRPATKMISSFMD 68 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y LG T+T D +G + + V F AE + L F+G Q+P YSALK Sbjct: 69 GEKEYIATLCLGVETETQDPEGAEIARKQVGFLHAETIETCLAGFKGTQMQVPPAYSALK 128 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNE--LELEIHCSKGTYIRTIID 185 +QGK LY YAR+GIEV ++AR ITV+E+ + EG+ L + + CSKG+YIRT+ Sbjct: 129 HQGKPLYYYARKGIEVKKDAREITVHEIERLGEGDLEGDHPSLVIRVRCSKGSYIRTLGS 188 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVT 215 D+G+ LGCGAH+ LRR + VE +T Sbjct: 189 DIGKVLGCGAHLTDLRRTKSGFFNVEDALT 218 >UniRef50_A8VS66 Pseudouridine synthase-like protein n=2 Tax=Bacillus RepID=A8VS66_9BACI Length = 317 Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 97/229 (42%), Positives = 132/229 (57%), Gaps = 9/229 (3%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L L KP+GM+S A++K I +AGHTG LDP G+LPIC+G ATK +YL + Sbjct: 13 GILPLWKPRGMTSFQAVRKAGGILKTKKAGHTGTLDPDVDGVLPICVGRATKIVEYLTAA 72 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y +G T+T DA G+ VE R F+ +++ L G+ +QIP MYSA+K Sbjct: 73 EKVYSGEVTIGWSTETEDASGETVETRMPEEAFTEQEVDDMLVQLTGEQKQIPPMYSAVK 132 Query: 131 YQGKKLYEYARQGIEVPREARPITVYEL-----LFIRHEGN-ELELEIHCSKGTYIRTII 184 GK+LYEYAR+G+ V R R ITV+ L ++ G+ HCSKGTYIRT+ Sbjct: 133 VNGKRLYEYAREGVSVTRPVRTITVHSLERTSPVYQHDNGSVSFTFTCHCSKGTYIRTLA 192 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELV-EQAEQQDIP 232 +GEKLG AH+ L R A + E VT E + + EQ E +P Sbjct: 193 VTMGEKLGYPAHMSRLTRDASGSFSKEDCVTFEDMEKYADEQPEHILLP 241 >UniRef50_A8ZZ61 tRNA pseudouridine synthase B n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZ61_DESOH Length = 303 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 144/286 (50%), Gaps = 18/286 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+++++KP G++S + VKR A + GH G LDP ATG+L + AT+ +++ L Sbjct: 6 DGIIVVNKPAGITSAKVVALVKRHTGARKVGHAGTLDPFATGVLVCLINRATRLAEFFLA 65 Query: 72 SDKRYRVIARLGQRTDTSDADGQ---IVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 SDK Y + LG TDT D G + + T S + + + +F G+ EQ P +SA Sbjct: 66 SDKTYAAVMCLGVETDTQDRTGTVTAVCDTSLQTVSDDAIRRVMTSFEGEGEQRPPAFSA 125 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K+QG LY ARQG+ V + ARP+ + L + E+ CS GTYIRT+ D+G Sbjct: 126 VKHQGVPLYRLARQGVYVEKPARPVVISSLTVQEICWPMVRFEVTCSSGTYIRTLCADMG 185 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCG H+ L R + + R V LEHL +L + + D LL+PM Sbjct: 186 RALGCGGHLYALERTRAGGFDLARAVDLEHLADLCKAGKATD---------LLVPMSEAL 236 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTS------GAPLEGLVRVTEGEN 288 S P P + + G + + A EG +VT+ + Sbjct: 237 SGMPRFTAPPSLAGRIAAGGQLTAADFAGFPAADAEGYFQVTDADG 282 >UniRef50_C9R8X3 tRNA pseudouridine synthase B n=1 Tax=Ammonifex degensii KC4 RepID=C9R8X3_AMMDK Length = 303 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/261 (35%), Positives = 146/261 (55%), Gaps = 14/261 (5%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GVL + KP GM+S+D + ++R+ + GH G LDP A G++ + +G+AT+ +Q+L+ Sbjct: 3 GVLNVLKPPGMTSHDVVDWLRRLTGEKKVGHAGTLDPDACGVMVLLIGKATRAAQFLVTE 62 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK YR A G RTDT D G+++ + ++ + E +A L F G I Q P M+SA++Y Sbjct: 63 DKEYRAEAVFGVRTDTLDLSGRVLACQDASWLTPEAVAEVLPQFTGSIWQKPPMFSAVRY 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----LELEIHCSKGTYIRTIIDDL 187 +GK+L+E AR G EV R + VY L ++ + + + L +HC KGTY+R+++ DL Sbjct: 123 KGKRLHELARAGQEVEVPPRRVEVYSLQLLKGDWGKRHPRVWLHVHCGKGTYVRSLVADL 182 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 GE LG GA + +L R V ++ + TLE L L E+ + L L+P+ Sbjct: 183 GEALGTGACLGFLLRTRVGRFGIGEAYTLEELARLKEEGK---------LAKALIPLAEA 233 Query: 248 ASDYPVVNLPLTSSVYFKNGN 268 P + + + KNG Sbjct: 234 LGHLPAIEVGEEGAKRIKNGG 254 >UniRef50_B8DW45 tRNA pseudouridine synthase B n=5 Tax=Bifidobacterium RepID=B8DW45_BIFA0 Length = 350 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/218 (41%), Positives = 132/218 (60%), Gaps = 13/218 (5%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKF 65 +R +NGVL++DKPQG++S+D + V+ + + GH G LDP+ATG L I +G AT+ Sbjct: 5 KRDAKVNGVLIVDKPQGVTSHDIVAAVRAALHTRKVGHAGTLDPMATGALVIGVGHATRL 64 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVE---ERPVTFSAEQLAAAL-DTFRGDIEQ 121 QY+++ K Y R GQRT T DADG+ VE E V + EQ+ A+ + + GDIEQ Sbjct: 65 LQYIVEHTKTYSATIRFGQRTTTDDADGEFVEREAEAAVLPTLEQVREAVANEYTGDIEQ 124 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITV--YELLFIRHEGN-------ELELEI 172 IP+ SA+K G++ Y+ AR+G V +AR +TV +++L R ++++ + Sbjct: 125 IPNAVSAIKVNGQRAYDLAREGRHVELKARRVTVHAFDVLGGRQTQAANGTPVLDVDVRV 184 Query: 173 HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV 210 CS GTYIR + DLG CGAH+ LRR AV + V Sbjct: 185 TCSAGTYIRALARDLGNDFHCGAHLTRLRREAVGAFRV 222 >UniRef50_A5VJE2 tRNA pseudouridine synthase B n=18 Tax=Lactobacillus RepID=TRUB_LACRD Length = 301 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/265 (35%), Positives = 148/265 (55%), Gaps = 17/265 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ L K +GM+S + ++++I + GH+G LDP G+LPIC+G ATK YL+ Sbjct: 1 MDGIIPLYKERGMTSFACVSRLRQILKTKKIGHSGTLDPGVAGVLPICVGNATKVVDYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 S K+Y+ +G T T D DG +EE+ V ++ +A+++ G I QIP MYSA Sbjct: 61 QSGKQYQGELLIGFATTTQDLDGDKIEEKVVADEIPTSEILSAMNSLTGTIIQIPPMYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITV--YELLFIRHEGNE----LELEIHCSKGTYIRT 182 +K GKKLYEYAR G V R R +T+ +ELL +++ + + CSKGTYIRT Sbjct: 121 VKVNGKKLYEYARAGETVERPKRQVTISKFELLSSKYDKKNKQQRIRFNVECSKGTYIRT 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 ++ DL KLG + L RL + +++ ++L+ +R+ V A + L L Sbjct: 181 LVVDLARKLGYPGVMSLLTRLKSGGFTLDQTLSLDDVRDAV---------ATQTLQQYLY 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNG 267 P+D DYP + + + +NG Sbjct: 232 PLDYALKDYPQLTIQVAQWKKVQNG 256 >UniRef50_Q02Z55 tRNA pseudouridine synthase B n=21 Tax=Streptococcaceae RepID=TRUB_LACLS Length = 330 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 93/256 (36%), Positives = 141/256 (55%), Gaps = 18/256 (7%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++NG+L + K G +S D + K++ I + GH G LDP TG+LPI +G++T+ +Y+ Sbjct: 4 NLNGILNVYKEAGWTSFDVVAKLRCILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYM 63 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYS 127 + K Y +G T+T DADG IV + PV + ++ +A+ F G I+QIP MYS Sbjct: 64 EAAGKIYEGQVTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSRFVGKIKQIPPMYS 123 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELL------FIRHEG-NELELEIHCSKGTYI 180 A+K GKKLYEYAR G + R AR IT+ + + + EG ++ CSKGTY+ Sbjct: 124 AVKINGKKLYEYARAGQTIERPAREITIKSFVRTSPIDWNKEEGLVTFSFKVECSKGTYV 183 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT+ DL + LG H+ L+R A + ++ + L + E+ E + L + Sbjct: 184 RTLAVDLADSLGYAGHMSKLQRTASNGLLIKDAIKLSKIEEIQESGK---------LSTI 234 Query: 241 LMPMDSPASDYPVVNL 256 L P + SD P VNL Sbjct: 235 LYPAEYAVSDLPRVNL 250 >UniRef50_B6AR13 tRNA pseudouridine synthase B n=2 Tax=Leptospirillum sp. Group II RepID=B6AR13_9BACT Length = 325 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 87/213 (40%), Positives = 128/213 (60%), Gaps = 7/213 (3%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ L+DKP GM+S+D + V++ R GH G LDP+ATG+LP+ +G++T+ ++ + Sbjct: 14 SGMFLVDKPAGMTSHDVVDSVRKNLGFPRVGHGGTLDPMATGVLPVFVGKSTRLAEMIHG 73 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA---EQLAAALDTFRGDIEQIPSMYSA 128 DK YR R G TDT D++G+++ E + F +L L F G Q P MYSA Sbjct: 74 YDKTYRFDVRFGVTTDTGDSEGKLLTE--IKFDQLDRVKLKGVLQDFTGVRLQKPPMYSA 131 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVY--ELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 +K G LY AR+GIEV REAR I +Y E+L + +G + CSKGT++RTI ++ Sbjct: 132 VKKNGTPLYRLARKGIEVEREARRIEIYSLEMLTVSPDGKTASFRVKCSKGTFVRTIAEE 191 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 +GE +G G HV+ L R + VE V+L L Sbjct: 192 IGEAIGLGGHVVSLCREEFGHFRVEDAVSLGDL 224 >UniRef50_C1F2Z6 tRNA pseudouridine synthase B n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2Z6_ACIC5 Length = 313 Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 97/282 (34%), Positives = 149/282 (52%), Gaps = 14/282 (4%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 R +NG+L++DKP G++S+D + +V+R GH G LDP+ATG+LP+ LG+ T+ +QY Sbjct: 21 RQVNGLLIVDKPGGITSHDVVARVRRATGEKSIGHLGTLDPMATGVLPLLLGKFTRLAQY 80 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYS 127 S+K Y R G TDT DA+GQ E RP+T S E+L A F+G IEQ+P +S Sbjct: 81 FGSSEKSYTGTIRFGFATDTYDAEGQPSSEPRPLTHSLEELRALAARFQGQIEQMPPPFS 140 Query: 128 ALKYQGKKLYEYARQGIEVPR-EARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 A K G+ Y+ AR G E P+ A P+T++E + + + S G Y+R++ + Sbjct: 141 AKKIGGQPAYKAARAG-ETPQLRAVPVTIHEFVLESLAEDTAAFRMQVSAGGYVRSVAHE 199 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE-QQDIPAAELLDPLLMPMD 245 LG GCGAH+ LRR A + + + L+ + L E + +P + P Sbjct: 200 LGAAAGCGAHLASLRRTAAGAFTLAEALPLDEIECLAAAKELEARMPHPRAILP------ 253 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE 287 + P V L ++ +NG V +VR+ G+ Sbjct: 254 ----EMPAVTTDLQTAGRLRNGMQVNLPDFSTAPMVRIFVGQ 291 >UniRef50_A8SMZ3 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMZ3_9FIRM Length = 298 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 103/294 (35%), Positives = 152/294 (51%), Gaps = 19/294 (6%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 + NG+L + KP+G +S D + V++IY + GH G LDP ATG+LPI +G ATK +Y+ Sbjct: 2 NFNGILNVYKPKGFTSRDVVNIVRKIYKTKKIGHAGTLDPNATGVLPIAIGNATKIVEYI 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RGDIEQIPSMYSA 128 K Y LG TDT D G + + V Q + + I QIP MYSA Sbjct: 62 QSMGKCYVGEMTLGIETDTLDIWGGSLNSKEVYLDKNQFFEVIKEYDNKKISQIPPMYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK GK+LYEYAR GIEV RE R +Y L+ + N++ E++CSKGTYIR++ +D+ Sbjct: 122 LKKNGKRLYEYARLGIEVEREKREAEIYSLIILNFYDNKIRFEVNCSKGTYIRSLFNDIA 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 A++ L R + +E +LE L+ E +L + L+ D Sbjct: 182 SDTDNFAYMSSLCRSKYGIFKIENAFSLERLKNFNEN---------QLYNSLMKIED--V 230 Query: 249 SDYPVVNLPLTSSVYFKN-GNPVR-TSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 +Y ++ YFK+ N +R T EG+ ++ + FIG+GE+ E Sbjct: 231 FEYERIDFD---KKYFKHISNGLRKTFDIEKEGIFKIY--CDNIFIGIGELVSE 279 >UniRef50_C2C2D8 tRNA pseudouridine synthase B n=3 Tax=Listeria RepID=C2C2D8_LISGR Length = 312 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/267 (33%), Positives = 141/267 (52%), Gaps = 17/267 (6%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + + G++ L K GM+S+D + ++++I + + GHTG LDP G+LPIC+G ATK ++Y Sbjct: 4 KGMEGIIPLWKEPGMTSHDCVFRLRKILHTKKVGHTGTLDPDVAGVLPICIGRATKLAEY 63 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYS 127 + K Y +G T T DA G+I+ E+ V+ SAEQ+ A+ G+I Q+P MYS Sbjct: 64 VTAEGKTYIADVSIGTATTTEDASGEIIAEKAVSEISAEQIEEAIHQLEGEIAQVPPMYS 123 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYEL------LFIRHEGNELELEIHCSKGTYIR 181 A+K G+KLYEYAR G V R R + ++ + I E +EI C KGTYIR Sbjct: 124 AVKVNGRKLYEYARNGETVDRPVRKVQIHAIKRLDAPQSITAEAPTFTIEISCGKGTYIR 183 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ +GE LG AH+ L+R + E L + +++ +Q L Sbjct: 184 TLAVMIGEILGYPAHMSALKRTRSGYFETEHCFRLAEIEAMMKAEDQH----------FL 233 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGN 268 +P++ ++ P + + NG Sbjct: 234 LPLEKGIAEMPRIEVNAAVHSEILNGK 260 >UniRef50_C8WI31 tRNA pseudouridine synthase B n=2 Tax=Coriobacteriaceae RepID=C8WI31_EGGLE Length = 340 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 99/235 (42%), Positives = 131/235 (55%), Gaps = 9/235 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R +R ++ V+ ++KP GMSS+D + + + I+ R GHTG LDP+ATG+LPIC+G Sbjct: 1 MPRVKRGLSGLSLVVGVNKPAGMSSHDVVNRCRSIFGERRVGHTGTLDPMATGVLPICVG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV---TFSAEQLAAALDTFRG 117 AT+ YL DKRYRV G TDT DA G +V V E AA + + G Sbjct: 61 PATRLGAYLTGHDKRYRVSIAFGAGTDTDDAAGTVVRTGEVPDRVLDPEFAAAFVASLVG 120 Query: 118 DIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYEL-LFIRHEGNELEL-----E 171 +Q+P YSA+K GKK YE AR G + R I VY+ L HEG+ EL Sbjct: 121 RRKQMPPAYSAIKVNGKKSYEAARAGNIIDLAPRDIEVYDARLLGVHEGDGEELPSWDVS 180 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 SKGTYIR++ D G LGC AHV L R + +E V+LE L +L ++A Sbjct: 181 FEVSKGTYIRSLARDAGVALGCPAHVAALERTELGLLTLEECVSLETLADLKDRA 235 >UniRef50_A3VQI2 TRNA pseudouridine synthase B n=2 Tax=Alphaproteobacteria RepID=A3VQI2_9PROT Length = 320 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 10/285 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RRRG+ ++G L+LDK S +A+ K++ +++A +AGH G LDPLATG+LP+ G Sbjct: 1 MAR-RRRGQPLHGWLVLDKAYDYGSTEAVSKLRWLFDAQKAGHAGTLDPLATGVLPVAFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK Y+ D K YR A+ G+ T D +G+++ ++ A L F G+IE Sbjct: 60 EATKTVPYIQDGKKTYRFTAKWGEARSTDDREGEVIATSAHRPERSEIEARLCDFEGNIE 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG-NELELEIHCSKGTY 179 QIP +SA+K G++ Y+ AR+G+ V +R + + L + +E E KGTY Sbjct: 120 QIPPAFSAVKIDGERAYDLAREGVAVTPPSRMVCIDRLSLLDCPSEDEAVFEAVTGKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHL--RELVEQAEQQDIPAAELL 237 IR ++ DL + LG HV LRR AV + E VT+E L R ++ D PA Sbjct: 180 IRALVRDLAKALGTVGHVAALRRTAVGPFSEEMAVTMEELTGRPSTDRLTVDDRPA---- 235 Query: 238 DP--LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 +P L+P+++ +++ + + NG + + GL Sbjct: 236 EPAQFLLPVEAALAEHLSATVDRAQAARLLNGGDAILAAPSMTGL 280 >UniRef50_UPI0001C373A4 tRNA pseudouridine synthase B n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373A4 Length = 297 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 156/295 (52%), Gaps = 14/295 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L ++KPQ +S D + K++ I R GH G LDP+ATG+LP+ +G ATK + Sbjct: 1 MNGILCVNKPQDFTSFDVVAKLRGILKMKRLGHGGTLDPMATGVLPVFVGNATKAVDIMP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y RLG +DT D G + S +++ A L FRG+I QIP MYSA++ Sbjct: 61 VTLKSYTADFRLGFTSDTQDVWGNAEKVSDKAVSPDEIEAVLPQFRGNIMQIPPMYSAVQ 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLG 188 G++LY+ AR+GIEV R+ R ++ L + ++ E LEI CS+GTY+RTII+D+G Sbjct: 121 VNGQRLYDLARKGIEVERQPRETEIHTLNMLSYDPVTREGVLEIECSQGTYVRTIINDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 EKLG G + L R + + + T + +++ ++ + L++P++ Sbjct: 181 EKLGVGGIMTGLVRNSACGFALSECHTFDEIQKAADEGR---------VGELILPIERVF 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPV---RTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 P + L + ++NG + R + G +G FIG D E Sbjct: 232 DTLPKLRLGEAQTRMYRNGVKLDLERIRNIREDADCYAVYGSDGGFIGTALTDRE 286 >UniRef50_B9YSP0 tRNA pseudouridine synthase B n=3 Tax=Nostocaceae RepID=B9YSP0_ANAAZ Length = 309 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 108/298 (36%), Positives = 156/298 (52%), Gaps = 27/298 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L+KP G +S+D + +V+++ R GH G LDP ATG+L I LG+AT+ QY L Sbjct: 19 VQGFLNLNKPYGWTSHDCVARVRKLLRLKRVGHAGTLDPAATGILLIALGKATRLLQY-L 77 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 +K Y+ RLG RT T D +G+++ +P S + AL F G IEQIP YSA+ Sbjct: 78 PGEKAYQATVRLGVRTTTDDLEGEVITSQPCAGLSLADIKTALSQFIGKIEQIPPSYSAI 137 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYEL-LFIRHEGN--ELELEIHCSKGTYIRTIIDD 186 + G++LY+ AR+G V R + V + + +G+ EL+L + CS GTYIR I D Sbjct: 138 QVDGQRLYDLARKGEMVLAPTRTVEVLNIEVLDWRDGDFPELDLALACSAGTYIRAIARD 197 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG L G + L R S + ++ VTL L ++ Q IPA D+ Sbjct: 198 LGIVLNTGGTLAALIRTESSSFCLQDSVTLTDLETQLQTGTFQPIPA-----------DA 246 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE----GLVRVTEGENGKFIGMGEIDDE 300 P VN+ T + + G V PL+ GLVRV E +F+G+ +I D Sbjct: 247 ALQTLPSVNISGTFAKKWCQGQQV-----PLDIDLLGLVRVY--EEARFLGIAQIQDH 297 >UniRef50_C8WWJ2 tRNA pseudouridine synthase B n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWJ2_ALIAD Length = 302 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/248 (39%), Positives = 137/248 (55%), Gaps = 20/248 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVLL+DKPQGM+S+D + +V+R R GH G LDP+ATG+L IC+G T+ +YL Sbjct: 4 LDGVLLIDKPQGMTSHDVVNRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEYLG 63 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAA---ALDTFRGDIEQIPSMYS 127 DK Y G TDT DA+G +V + + + LAA A G+I Q P YS Sbjct: 64 QGDKDYSGTVVFGVGTDTDDAEGTVVAQ--ASAAGLDLAAVRQAALRLTGEIRQRPPQYS 121 Query: 128 ALKYQGKKLYEYARQG--IEVPREARPITVYELLFIRHEGNELELEIH--CSKGTYIRTI 183 A+ G++ Y+ ARQG +E+P + + L RHEG H CSKGTY+R + Sbjct: 122 AVHIDGRRAYDLARQGKKVELPERTVRVQAFTLDEFRHEGELAVARFHVRCSKGTYVRAL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL-- 241 DLG +G AH+ LRRLA+ VE ++L+ + D PA+ L DPLL Sbjct: 182 CRDLGALVGLPAHMRSLRRLAIGSARVEDAISLD------DWMASGD-PASHLRDPLLYL 234 Query: 242 --MPMDSP 247 +PM P Sbjct: 235 EGLPMWQP 242 >UniRef50_Q8R5X8 tRNA pseudouridine synthase B n=16 Tax=Fusobacterium RepID=TRUB_FUSNN Length = 287 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 157/288 (54%), Gaps = 14/288 (4%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+++++KP+G++S D ++K+K+ + GHTG LDPLA G++ +C+G+ATK + L Sbjct: 3 GIIVINKPKGITSFDVIRKLKKFLKTKKIGHTGTLDPLAIGVMLVCVGKATKLASDLEAK 62 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 DK Y +G TDT D +G+ + E + S E L +L F G+I+Q+P MYSA+K Sbjct: 63 DKVYIADFDIGYATDTYDIEGKKIAENIIEVSKENLEQSLKKFIGNIKQVPPMYSAIKID 122 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 G KLY AR+GIEV R R IT+ + + + N+ ++E SKG YIR++I D+G+ LG Sbjct: 123 GNKLYHLARKGIEVERPERDITIEYINLLDFKDNKAKIETKVSKGCYIRSLIYDIGQDLG 182 Query: 193 CGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYP 252 A + L+R V +Y +E +LE + E+ + + E Y Sbjct: 183 TYATMTALQRKQVGEYSLENSYSLEQIEEMTLNNNFKFLKTIE-----------EIFSYD 231 Query: 253 VVNLPLTSS-VYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 NL + +KNGN V+ R+ + +FIG+ I++ Sbjct: 232 KYNLQTEKEFILYKNGNTVKIKENLENKKYRIYFQD--EFIGLANIEN 277 >UniRef50_Q5PAY2 tRNA pseudouridine synthase B n=10 Tax=Anaplasmataceae RepID=TRUB_ANAMM Length = 306 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 99/272 (36%), Positives = 147/272 (54%), Gaps = 15/272 (5%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L +DKP MSS + +VK+I+N + GH G LDPLATG+LP+ +GEATK Y +D Sbjct: 9 GWLNVDKPLHMSSGSVVGRVKKIFNC-KVGHAGTLDPLATGVLPVAVGEATKTIPYAVDG 67 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y V + G + T DA+G+I++ + SA+ + AL F G+I Q+P +SA++ + Sbjct: 68 LKSYAVTVQWGSQRSTDDAEGEIIKTSSLRPSADSIREALGQFVGNIRQVPPAFSAVRVR 127 Query: 133 GKKLYEYARQG--IEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y AR+G + +P + I +LL E N + I C KG YIR+ DLG Sbjct: 128 GVRAYRLARRGEAVSLPPKEVCIVSIDLLSADEESNTADFLIVCKKGVYIRSFARDLGAS 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC +V +LRR +V + E VTL+ L L + A++L+ L+P+ D Sbjct: 188 LGCFGYVSFLRRKSVGPFSEENSVTLDRLEALAD---------ADVLNEALLPISYVMGD 238 Query: 251 YPVVNLPLTSSV--YFKNGNPVRTSGAPLEGL 280 ++ L + + V K G V L GL Sbjct: 239 -ALLRLHVDAEVAEIVKKGQSVSLQRTSLNGL 269 >UniRef50_C9MUE6 tRNA pseudouridine synthase B n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MUE6_9FUSO Length = 358 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 139/226 (61%), Gaps = 12/226 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++LL+K +G+SS A+ +K++ A + GH G LDP+A G++ + + EATKFS L+ Sbjct: 8 DGLILLNKSKGVSSFGAINHLKKVIKAKKVGHAGTLDPMAEGLMIVMINEATKFSDNLMK 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVE--ERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y V LG +T T D +G ++ + + S ++ A+++F+G I+Q+P MYSA+ Sbjct: 68 KDKEYYVEMELGYKTGTYDLEGTVIAKYDSEINISDSEIIKAVNSFKGKIKQVPPMYSAI 127 Query: 130 KYQGKKLYEYARQGIEVPREARPITVY---ELLFIRHEGN-------ELELEIHCSKGTY 179 K +G+KLY+ AR+GIEV R R + + E+ IR + N ++ + S GTY Sbjct: 128 KIEGQKLYDLARKGIEVERAERDVEISEIREIKVIRPDKNSENVQNIKISFYVKVSSGTY 187 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 IR+++ D+GEKLG A + L R + ++ +E ++LE + +++ Sbjct: 188 IRSLVYDIGEKLGVFATMTRLVRTKIGRFEIEDAISLEKAKAEIDK 233 >UniRef50_C6IW07 tRNA pseudouridine synthase B n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IW07_9BACL Length = 305 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 128/246 (52%), Gaps = 14/246 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 G+L + KP G +S+D + K + I R GHTG LDP TG+LP+CLG AT+ +YL D Sbjct: 5 EGILPIHKPAGFTSHDVVAKCRGILKMKRIGHTGTLDPAVTGVLPLCLGRATRMVEYLQD 64 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y LG TDT D G+I+E+ V + E + L F G I QIP MYSALK Sbjct: 65 LPKEYEATLVLGVATDTEDMTGEIIEQVNEVQVTEEDVRRVLSRFVGTISQIPPMYSALK 124 Query: 131 YQGKKLYEYARQGIEVPREARPITVY--ELLFIRHEG--NELELEIHCSKGTYIRTIIDD 186 GK+LYE AR+G V R+ R +T+Y ELL EG + CSKGTYIRT+ D Sbjct: 125 QDGKRLYELAREGKTVERKPREVTIYQLELLAFHPEGLHPRISFRALCSKGTYIRTLCVD 184 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G LG A + L+R + +TL+ + QD L+P+D Sbjct: 185 IGRALGVPAAMTELKRTMSAGITESHCLTLDEVARHAASGSLQD---------YLLPVDR 235 Query: 247 PASDYP 252 P Sbjct: 236 AVQHLP 241 >UniRef50_C6LME9 tRNA pseudouridine synthase B n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LME9_9FIRM Length = 332 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 96/260 (36%), Positives = 145/260 (55%), Gaps = 9/260 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ + K +G +S+D + K++ I + + GHTG LDP A G+LP+CLG AT+ L Sbjct: 2 INGIVNVYKEKGFTSHDVVAKLRGILHQKKIGHTGTLDPEAEGVLPVCLGNATRLCDMLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK YR + LGQ TDT D G ++ S E + +A+ F G EQ+P MYSALK Sbjct: 62 DKDKTYRAVLLLGQTTDTQDTTGTVLSTCAEIPSEEAVRSAVTGFIGPYEQVPPMYSALK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYE AR+G V R+AR + +Y + + + + + CSKGTYIRT+ D+GE+ Sbjct: 122 VGGKKLYELAREGKTVERQARTVQIYGITIEDIQLPRVTMTVSCSKGTYIRTLCHDIGER 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCG + L R V + + + L + +L L+ ++P+++ + Sbjct: 182 LGCGGCMEALLRTRVGAFVLADSLRLSEIEKLQSDGN---------LENSIVPVEAMFAQ 232 Query: 251 YPVVNLPLTSSVYFKNGNPV 270 YP + + NGNP+ Sbjct: 233 YPALRTKAAADRLLYNGNPL 252 >UniRef50_Q2J732 tRNA pseudouridine synthase B n=1 Tax=Frankia sp. CcI3 RepID=Q2J732_FRASC Length = 327 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 130/226 (57%), Gaps = 10/226 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++++DKP G +S+D + + +RI R GH G LDP+ATG+L + G T+ +L Sbjct: 33 VDGLVVVDKPAGWTSHDVVARARRILGQRRIGHAGTLDPMATGVLVLGAGRGTRLLGHLA 92 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +DK Y RLG+ T T DA+G VE+RPV A++L A+ G ++Q+P+ SA+K Sbjct: 93 LTDKVYDATIRLGRTTTTDDAEGAPVEDRPVDVDADRLTRAMAALTGVLDQVPASVSAVK 152 Query: 131 YQGKKLYEYARQGIEVPREARPITV--YELLFIRHEGN--------ELELEIHCSKGTYI 180 G + Y R G V R +TV ++LL R G+ +LE+ + CS GTY+ Sbjct: 153 VGGVRAYARVRAGEVVDLAPRRVTVHRFDLLARRAAGDGAVDPAGTDLEVTVGCSSGTYV 212 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 R + DLG L CGAH+ LRR AV + + VTL+ EL +A Sbjct: 213 RALARDLGAALDCGAHLTALRRTAVGPFDLAGAVTLDTFAELGPRA 258 >UniRef50_B3CM19 tRNA pseudouridine synthase B n=5 Tax=Wolbachia RepID=TRUB_WOLPP Length = 353 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 122/213 (57%), Gaps = 2/213 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG L LDKP GMSS A+ ++KRI+ +AGH G LDPLA+G+LPI LGEATK YL Sbjct: 2 VNGWLNLDKPTGMSSAQAVTQIKRIFGIKKAGHLGTLDPLASGILPIALGEATKTIPYLS 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y + G++T T D G I+ + Q+ A+ F G+I Q P +SA+K Sbjct: 62 CDLKAYNFTIKWGKQTTTDDLGGDIIRTSDIKPEYNQINCAIKDFIGEITQTPPQFSAVK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYEL--LFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +G + Y+ AR G +V + R + ++EL +F+ N + + C G Y+R+I DLG Sbjct: 122 IKGARAYKLARSGQKVNIKPRQVKIHELKMIFLDTINNIADFSMICGSGVYVRSIARDLG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 +L C H+ LRR V + + VT+E L + Sbjct: 182 IELNCFGHITQLRRTMVGDFKEDESVTIEQLTK 214 >UniRef50_C2BRN4 Possible tRNA-pseudouridine synthase I n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BRN4_9ACTO Length = 368 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 15/222 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP+G+SSN +++R+ + G+ G LDPLATG+L +G+AT+ QYL Sbjct: 38 GLVIVDKPRGLSSNAVASRIRRLAGQKKVGYAGTLDPLATGILICAIGKATRLLQYLTAH 97 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 DK Y R G TDT DA GQ++ S ++ AAL+ +RG ++QIP+ +SA+K Sbjct: 98 DKVYTARVRFGISTDTDDALGQVLSRAGAALSTAEITAALEPWRGAVDQIPAKFSAIKIG 157 Query: 133 GKKLYEYARQGIEVPREARPITVYEL---------LFIRHEGN------ELELEIHCSKG 177 GK+ Y+ AR G V + RP+T++ L + N + ++ + CS G Sbjct: 158 GKRAYDLARAGKNVEIQPRPVTIHRLELRGAPVLETVAGDDSNPPVQVTDADIVVGCSAG 217 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 TY+R++ DLG LG GAH+ LRR++V Y +++ +L Sbjct: 218 TYVRSLARDLGADLGVGAHLTALRRISVGSYGLDQAHSLSEF 259 >UniRef50_A4A2R8 TRNA pseudouridine synthase B (Fragment) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2R8_9PLAN Length = 280 Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 136/248 (54%), Gaps = 16/248 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L + KP G +S DA+ +V R + GH G LDPLATG+L C+G T+ +YL Sbjct: 1 MHGILNIHKPPGWTSRDAVNRVNRFVRPAKVGHAGTLDPLATGVLICCVGSGTRLIEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVE--ERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 KRY LG+ +DT D +G + E + P SA QL A L F G+I Q PS +SA Sbjct: 61 QMPKRYVGQFELGKTSDTEDLEGVVTEIVDAP-EISAAQLTAILPEFVGEILQRPSTFSA 119 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K GK+ Y+ ARQG V RPIT+YE+ E E+++ C GTY+R + D+G Sbjct: 120 IKVDGKRAYKLARQGAAVELAPRPITIYEITLRGFEYPRFEIDVLCGGGTYMRALGRDIG 179 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 E+LG GA + L+R A+ + +E + L+ L +AE + L P+ + Sbjct: 180 ERLGSGAVMTGLQRTAIGDFRLEDAIPLDEL-------------SAESVAENLSPLSTAV 226 Query: 249 SDYPVVNL 256 S P + L Sbjct: 227 SQAPQITL 234 >UniRef50_A2RE90 tRNA pseudouridine synthase B n=24 Tax=Streptococcus RepID=TRUB_STRPG Length = 294 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/250 (36%), Positives = 137/250 (54%), Gaps = 18/250 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ L K GM+S+DA+ K++++ + GH G LDP G+LPI +G+AT+ +Y+ Sbjct: 2 INGIINLKKEAGMTSHDAVFKLRKLLQEKKIGHGGTLDPDVVGVLPIAVGKATRMIEYMT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 ++ K Y LG T T DA G++V P + E + + TF G I Q P MYSA Sbjct: 62 EAGKVYEGQVTLGYSTTTEDASGEVVARSSLPAVLTEELVDQTMTTFLGKITQTPPMYSA 121 Query: 129 LKYQGKKLYEYARQG--IEVPREARPITVYE----LLFIRHEGNELELEIHCSKGTYIRT 182 +K G+KLYEYAR G +E PR I+++E L F ++ CSKGTY+RT Sbjct: 122 VKVNGRKLYEYARAGESVERPRREVTISLFERTSPLNFTEDGLCRFSFKVACSKGTYVRT 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + DLG LG +H+ +L+R A + +E TL + ++V + E L+ Sbjct: 182 LAVDLGRALGVESHMSFLQRSASAGLTLETAYTLGEIADMVSKQEMS----------FLL 231 Query: 243 PMDSPASDYP 252 P++ +D P Sbjct: 232 PIEYGVADLP 241 >UniRef50_D0MI93 tRNA pseudouridine synthase B n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI93_RHOM4 Length = 249 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 135/226 (59%), Gaps = 9/226 (3%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 PR R VLL+DKP+G++S D +++++++ + GH G LDP+ATG+L +G AT Sbjct: 17 PRLPERWDAAVLLIDKPKGITSFDVIRRLRKLLRVRKIGHAGTLDPMATGLLICLIGRAT 76 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAA-----LDTFRGD 118 ++ + + +K Y + RLG+ T + DA+ ++VE R S E L A F G+ Sbjct: 77 RWMTHFMAQEKEYEGVMRLGEITPSYDAETEVVERR----SWEHLTDADLERVRHQFVGE 132 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 I Q YSA+K +GK+LYE AR G V R +R + +Y + +G ++ + CSKGT Sbjct: 133 IVQQVPAYSAVKVKGKRLYEQARAGKAVERPSRRVQIYAFELLGRDGADVAFRVRCSKGT 192 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 YIR+++ D G+ LGCGAH++ LRR Y VE+ TLE L E ++ Sbjct: 193 YIRSLVHDFGQALGCGAHLVELRRTRSGPYRVEQAWTLEALAEALQ 238 >UniRef50_Q6MD66 tRNA pseudouridine synthase B n=15 Tax=Chlamydiales RepID=TRUB_PARUW Length = 262 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/205 (41%), Positives = 124/205 (60%), Gaps = 2/205 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG-EATKFSQYL 69 + G+LL++KP+G +S ++ +++ + GH G LDP ATG++ + +G T+ S Sbjct: 40 LEGILLINKPKGKTSFSLVRDLRKRLGVKKIGHAGTLDPFATGVMVMLVGRNYTRLSDQF 99 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 L SDK Y A LG TD+ D +GQ++ + + + EQ+ A F+G IEQ+P M+SA Sbjct: 100 LLSDKEYIAEAYLGVVTDSYDCEGQVLSQSNIIPTLEQIKEAFSLFQGKIEQVPPMFSAK 159 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K QGKKLYE ARQGI V R+ I+++ L + + L I CSKGTYIR+I DLG Sbjct: 160 KQQGKKLYELARQGIVVERQPVKISIHTEL-LSYNYPYLNFRIECSKGTYIRSIAYDLGT 218 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMV 214 KLGCGAH+ L R + +E + Sbjct: 219 KLGCGAHLSNLTRTRSGAFCLENCL 243 >UniRef50_A0QIX1 tRNA pseudouridine synthase B n=93 Tax=Actinomycetales RepID=TRUB_MYCA1 Length = 309 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 128/214 (59%), Gaps = 5/214 (2%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP GM+S+D + + +RI+ R GH G LDP+ATG+L + + ATK L + Sbjct: 5 GLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAA 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y RLGQ T T DA+G +V +++ + AA+ RGDI Q+PS SA+K Sbjct: 65 AKSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 124 Query: 132 QGKKLYEYARQGIEVPREARPITV--YELLFIRHEGN--ELELEIHCSKGTYIRTIIDDL 187 GK+ Y+ R+G V ARP+ + +E+ +R G ++++E+ CS GTY+R + DL Sbjct: 125 AGKRAYKLVREGQAVELPARPVRIDRFEVRDLRAAGECVDVDVEVDCSSGTYVRALARDL 184 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 G LG G H+ LRR V ++ +E+ L+ L E Sbjct: 185 GAALGVGGHLTALRRTRVGRFGLEQAYGLDELAE 218 >UniRef50_D1AS76 tRNA pseudouridine synthase B n=1 Tax=Anaplasma centrale str. Israel RepID=D1AS76_ANACI Length = 308 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 90/235 (38%), Positives = 131/235 (55%), Gaps = 12/235 (5%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L +DKP MSS + ++++I+N + GH G LDPLATG+LPI +GEATK QY +D Sbjct: 12 GWLNIDKPLYMSSGGVVGRIRKIFNC-KVGHAGTLDPLATGVLPIAVGEATKTVQYAVDG 70 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + G + T DA+G+++ + SA + AL F GDI+Q+P +SA++ Q Sbjct: 71 LKSYVAAVQWGAQRSTDDAEGEVIGTSSLRPSASSIREALGQFVGDIQQVPPAFSAVRVQ 130 Query: 133 GKKLYEYARQGIEVPREARPITV--YELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y AR+G V + + + +LL + E N I C +G YIR+ DLG Sbjct: 131 GVRAYNLARKGKAVSLAPKSVCIVSVDLLSVDEEKNVANFLIVCRRGVYIRSFARDLGIS 190 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 LGC +V LRR +V + E +TLE L EL +A LD +L+P+ Sbjct: 191 LGCLGYVSSLRRKSVGPFLEEDSITLERLEEL---------ASANALDGVLLPIS 236 >UniRef50_Q1IPJ6 tRNA pseudouridine synthase B n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IPJ6_ACIBL Length = 302 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 151/280 (53%), Gaps = 13/280 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++ VL++DKP G +S+D + +++R+ + AGH G LDP+ATG+LP+ LG T+ SQ+ Sbjct: 3 LDAVLVIDKPAGWTSHDVVARLRRVLSERSAGHLGTLDPMATGVLPVVLGRYTRLSQFYN 62 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 S+K Y R G T+T DA+G+ V E + V + E + A F G + Q+P +SA Sbjct: 63 HSEKSYEGEIRFGFATNTYDAEGETVGEAQTVQVALEGVREASREFVGPLSQLPPPFSAK 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYEL-LFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 K G Y+ AR+ +EV + I V++ +F + + H S GTYIR++ DLG Sbjct: 123 KINGVPAYKLARKNVEVELKPSAIEVFQFEVFEGSAPDRIGFRAHVSSGTYIRSLAHDLG 182 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP-LLMPMDSP 247 +KLGCGAH+ LRR V+++ +++ TL E VE A + P + P ++P Sbjct: 183 QKLGCGAHLASLRRTTVAEFTIDQAHTL----EAVETAVAKGNPEELFVHPRRILP---- 234 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE 287 P V + Y +NG V LV+V G+ Sbjct: 235 --QLPCVTANDETVAYIRNGRAVNLPEFSKAKLVKVFAGQ 272 >UniRef50_B9Y7W5 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7W5_9FIRM Length = 291 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 98/273 (35%), Positives = 145/273 (53%), Gaps = 17/273 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ L++KP GM+S D + +V++ GHTG LDP ATG+L + LG A K YL Sbjct: 10 VDGICLINKPAGMTSFDVVYQVRKAAGIKSVGHTGTLDPQATGVLVVLLGRACKALPYLS 69 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG +TDT D G+ +E RP + Q+ A L++F G Q+P M SA+ Sbjct: 70 GKTKEYIAELTLGTKTDTGDIWGKPLETRPAIKLEPGQIKAVLNSFLGVSMQLPPMVSAI 129 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G+KLYEYAR+G+EV RE RP+ + E+ + + + + CS GTY+RT+ +D+ E Sbjct: 130 KKDGRKLYEYAREGVEVEREKRPVEIIEIELL-QVASSIRFRVVCSNGTYVRTLCEDIAE 188 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG + L R Y +++ L+ V+Q Q L+ D AS Sbjct: 189 KLGTVGTMSSLIRTRACGYTLDQCQPLDE----VKQGHFQ----------LVSIYDGIAS 234 Query: 250 DYPVVNLPLTSSVYFKNGNPVRT-SGAPLEGLV 281 YP++ KNG +R S P+ G+V Sbjct: 235 QYPLIEANPAQIPDIKNGKRLRLDSTEPVVGVV 267 >UniRef50_B4WM04 tRNA pseudouridine synthase B, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WM04_9SYNE Length = 322 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 102/303 (33%), Positives = 163/303 (53%), Gaps = 30/303 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+G + L+KP G +S+D + + +++ + GH G LDPLATG+LP+ +G AT+ QYL Sbjct: 2 IHGFINLNKPVGWTSHDCVARTRKLLGTKKIGHGGTLDPLATGVLPLAVGRATRLLQYLP 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K YR + R G T T D +G I +++ T + AAL F G IEQ+P MYSA+ Sbjct: 62 EG-KAYRAVIRFGVITTTDDLEGNIAKQQDATELEEAAVDAALSQFIGKIEQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQG--IEVPREARPITVYELLFIRHEGN---ELELEIHCSKGTYIRTII 184 + +G++LY+ AR G +EVP+ R +T+ L+ + EL ++I C GTYIR++ Sbjct: 121 QVEGRRLYDLARAGKAVEVPK--RVVTIEHLVSQSWKPGVQPELTVDIKCGAGTYIRSLA 178 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 DLGE +G GA + L R S + + +TLE+L + + Q + A + ++ L Sbjct: 179 RDLGEAVGTGATLAGLTRTYSSGFKLTDSLTLENLEKAIAQNTFAPVSAGKAMEHL---- 234 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVR-TSGAPLEG---------LVRVTEGENGKFIGM 294 + LP + ++ G + T+G P+ VR+ E F+G+ Sbjct: 235 -------AAITLPPDLARRWQLGQKLEITAGIPIPQPIGDHANYPPVRILEATTQTFLGI 287 Query: 295 GEI 297 GEI Sbjct: 288 GEI 290 >UniRef50_Q4JV56 tRNA pseudouridine synthase B n=5 Tax=Corynebacterium RepID=TRUB_CORJK Length = 308 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/220 (39%), Positives = 124/220 (56%), Gaps = 10/220 (4%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GV+L+DKP G +S+D + K++RI R GH+G LDP+ATG+L + + TKF +++ Sbjct: 13 SGVVLVDKPSGPTSHDMVAKLRRIMGTRRIGHSGTLDPMATGLLVVGVERGTKFLAHVVT 72 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSA---EQLAAALDTFRGDIEQIPSMYS 127 DKRY RLG T T DA G ++ P A +Q+ A RGDI Q P+ S Sbjct: 73 HDKRYEATVRLGVATHTDDAQGDVLSTASPQDLQALTEQQVREAFAAQRGDIMQRPTSVS 132 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFI------RHEGNELELEIHCSKGTYIR 181 ++K GK+ +E R+G +V RP+T++ L + + + +HCS GTYIR Sbjct: 133 SIKIDGKRAHELVREGHDVVLPERPVTIFSLEVLDVVVDDATSCIDARISVHCSSGTYIR 192 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 I D+GE LG G H+ LRR +V + V TLE L E Sbjct: 193 AIARDVGEALGVGGHLTQLRRTSVGPFDVSEARTLEQLEE 232 >UniRef50_C7MBA9 tRNA pseudouridine synthase B n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MBA9_BRAFD Length = 318 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 87/214 (40%), Positives = 125/214 (58%), Gaps = 6/214 (2%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 P G +GVLL+DK G +S+D + +V+ + + GH G LDP+ATG+L + +G+ T Sbjct: 10 PSAPGSAPHGVLLVDKAAGRTSHDVVARVRWLLGTKKVGHAGTLDPMATGLLVLGVGQGT 69 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQ 121 + YL+ DK Y RLG+ T T D +G+ + E +A +++ L + RGDI Q Sbjct: 70 RLLTYLVGLDKTYEATIRLGRSTTTDDREGEPLGEIVDASGLTAAEISPHLASLRGDIAQ 129 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITV--YELLFIRHEGNELELE--IHCSKG 177 +PS SA+K GK+ Y AR G +V ARP+TV +E R EG L+L+ I CS G Sbjct: 130 VPSTVSAIKIDGKRAYARARAGEDVQLAARPVTVSRFEAGEARTEGEFLDLDAVIDCSSG 189 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE 211 TY+R + DLG LG G H+ LRR AV + V+ Sbjct: 190 TYVRALARDLGAALGMGGHLTALRRTAVGPFSVQ 223 >UniRef50_B2UQ50 tRNA pseudouridine synthase B n=3 Tax=Verrucomicrobia RepID=B2UQ50_AKKM8 Length = 244 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 85/210 (40%), Positives = 123/210 (58%), Gaps = 1/210 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVLL+DK + M+S+D + +R + GH G LDP+ATG+L + +G+ATK L+ Sbjct: 11 SGVLLIDKARDMTSHDVVAIARRSLGIKKIGHCGTLDPMATGLLMLVVGKATKLQDKLMC 70 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ-LAAALDTFRGDIEQIPSMYSALK 130 K Y LG T + DA G+IV E V EQ + A D F G EQIP M SA+K Sbjct: 71 EHKEYAGTLMLGVETSSQDAMGEIVAEYSVDGVTEQAVREAFDRFDGAFEQIPPMVSAIK 130 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G LY+ AR+G E+ RE RP+ V+ R E++ + CSKG Y+R+ D+G+ Sbjct: 131 KDGVPLYKLARKGQEIVREPRPVEVFGHGISRVAIPEVDFTVQCSKGFYVRSYAYDIGKA 190 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 LGCGAH+ LRR + ++R +T++ L+ Sbjct: 191 LGCGAHLSALRRTRSGSFTLDRAITVDTLK 220 >UniRef50_C4FYS6 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYS6_ABIDE Length = 309 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 150/287 (52%), Gaps = 19/287 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 INGV+ + K G +S DA+ ++ I + GHTG LDP A G+LP+C+G+ATK + L Sbjct: 2 INGVINVYKEVGYTSRDAVSRLTGILRQRKIGHTGTLDPAAEGVLPMCVGKATKLCELLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-------TFSAEQLAAALDTFRGDIEQIP 123 K+Y + +LG TDT D G+I E+ +AE L D F G Q P Sbjct: 62 GHKKQYIAVMKLGIATDTEDTTGEITEKTNYPENWYEENLTAENLTKITDKFIGTQFQTP 121 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVY--ELLFIRHEGNELELEIHCSKGTYIR 181 MYSA + G++LYE AR+G + R+ ITVY E+ I E+ + + CSKGTYIR Sbjct: 122 PMYSAKRVNGRRLYELAREGKVIERKPCEITVYGIEIKNIDIINREITVIVDCSKGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+GE LGC A + L R + +E L+ + ++V++ +D ++ Sbjct: 182 TLCKDIGEALGCKAAMKSLLRTRTGDFYLENSYKLDEIEKIVKENR---------VDEII 232 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTEGE 287 +P++ + +++ + V NG V A LE G + +GE Sbjct: 233 IPIEKIFYNLRRIDVTGYAGVLLDNGGIVNMEEARLEPGFDNIKDGE 279 >UniRef50_Q5FQM1 tRNA pseudouridine synthase B n=9 Tax=Acetobacteraceae RepID=TRUB_GLUOX Length = 333 Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 82/247 (33%), Positives = 136/247 (55%), Gaps = 3/247 (1%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 R+RGRDI+G L+LDKP G +S D + K++ ++A +AGH G LDPLA+G+LPI G+AT+ Sbjct: 3 RKRGRDIDGWLILDKPLGPTSTDMVNKLRWAFDAKKAGHGGTLDPLASGVLPIAFGKATR 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 Y++D+ KRYR G+ T D +G+++ P + +Q+ A L G++ Q+P Sbjct: 63 TIPYIMDATKRYRFTLTFGESRTTDDLEGEVLATSPNRPTDDQIRAVLPALTGNVMQVPP 122 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTYIRTI 183 ++SAL+ G++ Y+ AR G RP + + + R + N ++ KG Y+R++ Sbjct: 123 VFSALRVGGERAYDMARAGRPPELPPRPARIDSITLVERPDANTAVFDVQSGKGVYMRSL 182 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH--LRELVEQAEQQDIPAAELLDPLL 241 D+ G H+ LRR + + +T++ L + + + D A LLD Sbjct: 183 ARDIALACGTVGHISVLRRTKCGPFDLSHALTIDQISLDKSTQTVDNADALPAPLLDAAT 242 Query: 242 MPMDSPA 248 +D PA Sbjct: 243 ALVDIPA 249 >UniRef50_Q1NKV8 TRNA pseudouridine synthase B n=3 Tax=Deltaproteobacteria RepID=Q1NKV8_9DELT Length = 259 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/205 (41%), Positives = 123/205 (60%), Gaps = 4/205 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQYLLDS 72 V+ LDKP G SS +Q V+R + GH G LDP A+G+L +C+G AT+ + L+ Sbjct: 13 VIPLDKPVGPSSFRLVQLVRRALGIKKVGHAGTLDPFASGLLLVCVGRGATRLVERLMAG 72 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE-QLAAALDTFRGDIEQIPSMYSALKY 131 DK Y +LG TDT D +GQ+ VT +L L FRG+I Q+P +SA+K+ Sbjct: 73 DKEYLATLQLGVATDTHDREGQVTATEEVTHEQLLRLQEVLFRFRGEILQVPPAFSAVKH 132 Query: 132 QGKKLYEYARQGIEVPREARPITVYEL--LFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 QG+ LY YAR+G + + R + ++EL L + L + + CSKGTYIR++ ++G+ Sbjct: 133 QGRPLYAYARRGEIIEKPPRRVKIHELTPLELDRRQRRLVIRVRCSKGTYIRSLAHEIGQ 192 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMV 214 LGCGAH++ LRRLA + VE V Sbjct: 193 SLGCGAHLLELRRLASGPFRVEEAV 217 >UniRef50_D0WDY9 tRNA pseudouridine synthase B n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WDY9_9ACTN Length = 315 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/216 (41%), Positives = 128/216 (59%), Gaps = 16/216 (7%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+ +DKPQGMSS+DA+ +++R++ R GH G LDPLATG+L +C+G A++ YL + D Sbjct: 11 VIGIDKPQGMSSHDAVNRIRRMFGERRVGHMGTLDPLATGVLAVCVGPASRLDAYLTNHD 70 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPV-------TFSAEQLAAALDTFRGDIEQIPSMY 126 K Y G +TDT DA G+++ + V TF+ E LA+ + G Q+P Y Sbjct: 71 KTYEARIAFGAQTDTDDAAGEVIRQAAVAPELSDATFAQEYLASIV----GPRMQMPPAY 126 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITV--YELLFIRHEGNE---LELEIHCSKGTYIR 181 SA+K G K YE AR+G V EARP+ V +LL I + ++ + SKGTYIR Sbjct: 127 SAIKKDGVKAYEAARRGKAVELEARPVEVRAADLLAIDTDDAGRVFWDVRLEVSKGTYIR 186 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLE 217 +I D G +LG AH+ LRR+ + +E V+LE Sbjct: 187 SIARDAGLELGSAAHLSALRRVRAGRLGIEACVSLE 222 >UniRef50_A9BI94 tRNA pseudouridine synthase B n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI94_PETMO Length = 305 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 133/228 (58%), Gaps = 3/228 (1%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G L+++KP+G++S+D + +++ + + GH G LDP ATG+L + + +ATK ++ + Sbjct: 3 SGFLVINKPKGITSHDVINILRKKFGLQKIGHAGTLDPFATGVLVVGVNKATKLLEFFQN 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFS-AEQLAAALDTFRGDIEQIPSMYSALK 130 K Y V A LG TDT D +G+I E+ VT L +F G+ Q+P YSA K Sbjct: 63 EKKTYYVKAELGIITDTFDIEGKIQEKNIVTQQHISNLKDICFSFVGEYLQVPPAYSAKK 122 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 Y+GKKLYEYAR+G + + + +Y+L EG E + S GTYIR++I D+G Sbjct: 123 YKGKKLYEYAREGKIINLPPKKVKIYQLSNFSQEGQEFSFFVEVSSGTYIRSLIMDIGYA 182 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEH--LRELVEQAEQQDIPAAEL 236 LGCGA L R+ K+ ++ + LE L ++++ E D+P ++ Sbjct: 183 LGCGAVTKELCRVKSGKFELKDSILLEEVSLEKMLKMDEALDLPYVKI 230 >UniRef50_Q38W87 tRNA pseudouridine synthase B n=3 Tax=Lactobacillaceae RepID=TRUB_LACSS Length = 305 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 96/244 (39%), Positives = 134/244 (54%), Gaps = 18/244 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ L K +GM+SND + KV+RI + + GH+G LDP G+LPIC+G+ATK L+ Sbjct: 1 MDGIIPLYKERGMTSNDCVFKVRRILHMKKVGHSGTLDPNVDGVLPICIGQATKVVDQLV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 S K Y LG T T D DG++VEE+ +T S E++ L +F G+ QIP M+SA Sbjct: 61 HSGKVYTGEITLGLSTTTEDLDGEVVEEQQLTEPISTEKIKETLASFLGESIQIPPMFSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYEL------LFIRHEGNE-LELEIHCSKGTYIR 181 +K G++LY+YAR G V R R IT+ + F G + CSKGTYIR Sbjct: 121 VKVNGRRLYDYARAGDPVERPQRKITITQFDLQGEPEFDAKTGRQTFRFIAGCSKGTYIR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D G KLG A + L RL + VTL L E + + DI L Sbjct: 181 TLAVDFGRKLGLPAVMSDLTRLKSGGIQIGSCVTLAQLAEAADNGQLADI---------L 231 Query: 242 MPMD 245 +P+D Sbjct: 232 IPLD 235 >UniRef50_Q2G5F3 tRNA pseudouridine synthase B n=8 Tax=Sphingomonadales RepID=TRUB_NOVAD Length = 304 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 134/256 (52%), Gaps = 19/256 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRI-----YNANRAGHTGALDPLATGMLPICLGEATKF 65 ++G ++LDKP + S + VKR Y + GH G LDPLATG+LPI +GEATK Sbjct: 2 VDGWIILDKPLELGSTQGVAAVKRNLRQAGYGKCKVGHGGTLDPLATGVLPIAVGEATKL 61 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 +LD+ K Y G TD+ D +G IV V + L FR I+Q+P Sbjct: 62 CGRMLDASKVYAFTVAFGTETDSLDLEGGIVATSDVRPPLADVHVTLGAFRDSIDQVPPA 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEI-----HCSKGTYI 180 YSAL +G++ Y+ AR G V +R +T++ L G+E +E H SKGTYI Sbjct: 122 YSALMVEGRRAYDLARAGETVELPSRRVTIHALTLDSWTGSEGAVETATLTAHVSKGTYI 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R++ D+ LG HV LRRL + +E+ ++L+ L L + A L+ + Sbjct: 182 RSLARDIARALGTVGHVTMLRRLKAGPFAIEQAISLDKLNALGQGAP---------LEHV 232 Query: 241 LMPMDSPASDYPVVNL 256 L+P+++ D P ++L Sbjct: 233 LLPLEAGLVDIPALDL 248 >UniRef50_C7MNL5 tRNA pseudouridine 55 synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNL5_CRYCD Length = 340 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 93/245 (37%), Positives = 126/245 (51%), Gaps = 16/245 (6%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 RR + V+ +DKP GM+S+D + +++RIY R GHTG LDP ATG L +C+G AT+ Sbjct: 4 RREASGYSLVIGVDKPAGMTSHDVVDRIRRIYGERRVGHTGTLDPAATGALAVCVGPATR 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAA---LDTFRGDIEQ 121 ++L+ K Y G TDT DA G+++E+ PV S AA D+ G Q Sbjct: 64 LDRFLVGHRKEYEFTVVFGAATDTDDAQGRVIEQLPVPVSVGNEAAVRAYFDSQLGTQHQ 123 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----LELEIHCSKG 177 P YSA+K GKK Y AR+G + RPI +Y+L + E E + S G Sbjct: 124 RPPAYSAIKVNGKKSYAEARRGNVIELALRPIEIYKLDLVGFEQTEDMVSWCVRAEVSAG 183 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TY+R+I D G G AHV LRRL VE +TL+ E + P L Sbjct: 184 TYVRSIARDAGLAFGTCAHVGSLRRLRSGSLAVEDCLTLD---------EIERNPHTSAL 234 Query: 238 DPLLM 242 DPL + Sbjct: 235 DPLTL 239 >UniRef50_C0QHM4 TruB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHM4_DESAH Length = 302 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 92/251 (36%), Positives = 139/251 (55%), Gaps = 13/251 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L +DKP G+SS + +VKR N +AGHTG LDP ATG++ + T+ S++LL Sbjct: 3 SGILAVDKPGGISSARLVSRVKRCLNVKKAGHTGTLDPFATGLMLCGINSGTRISRFLLG 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT------FSAEQLAAALDTFRGDIEQIPSM 125 KRY LG TDT D G V+E+P + +Q+ ++TF G Q P + Sbjct: 63 GPKRYTATLCLGVETDTLDCTG--VKEQPANPTTVAAITPDQIIRVVNTFVGVQMQQPPV 120 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YSALK++G+ LY ARQG V + R I ++ + + +++H S GTYIR++ Sbjct: 121 YSALKHEGQPLYRLARQGRPVQKPLRQIEIFSASVEAIDLPHVTIKVHSSTGTYIRSLAR 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLREL-VEQAEQQDIPAAELLDPLLMPM 244 D+G LGCGAH++ LRR + V+ V L L + ++ + +P E+L MP Sbjct: 181 DIGSALGCGAHLVELRRTESCGFSVDNAVPLSDLEAMDKDEPLSRIVPMHEVLS--FMP- 237 Query: 245 DSPASDYPVVN 255 S A+D +V Sbjct: 238 -SFAADMQMVK 247 >UniRef50_A7BD72 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD72_9ACTO Length = 355 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 150/288 (52%), Gaps = 27/288 (9%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L++DKPQG++S+D + +V+R+ + GH G LDP+ATG+L I +G+ATK ++ Sbjct: 16 GLLVIDKPQGLTSHDVVSRVRRLARTRKVGHGGTLDPMATGVLVIGIGKATKLLTWVSGH 75 Query: 73 DKRYRVIARLGQRTDTSDADG-QIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR R G T+T DA+G + S EQL AAL RGDI Q+PS SA+K Sbjct: 76 SKEYRATIRFGVATNTDDAEGVATAAVGCASLSEEQLEAALAPQRGDIMQVPSTVSAIKV 135 Query: 132 QGKKLYEYARQGIEVPREARPITVYEL---------LFIRHEGN---------------- 166 GK+ Y AR G +V ARP+ + L I E + Sbjct: 136 NGKRAYALARAGEDVELAARPVRISRLEVLAPPRPAWCILDEPDPETAPDGAVAPGSVRV 195 Query: 167 -ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 ++++ + CS GTY+R + D GE LG GAH+ LRR V P+E +TL+ L VE Sbjct: 196 VDVDVVVECSSGTYVRALARDAGEALGVGAHLTALRRTRVGDVPLEAAMTLDELSAAVEA 255 Query: 226 AEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS 273 A + AE + PL+ ++ + +P + + + F +G R S Sbjct: 256 ASAEGESDAEPVLPLVPLGEAARTMFPSLLMTEAEAGAFAHGQAPRRS 303 >UniRef50_A1R520 tRNA pseudouridine synthase B n=14 Tax=Actinomycetales RepID=TRUB_ARTAT Length = 311 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 75/212 (35%), Positives = 125/212 (58%), Gaps = 7/212 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++++DKPQG +S+D + +++R+ + GH G LDP+ATG+L + + +AT+ Y++ Sbjct: 2 LSGLVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIV 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y RLG+ T T DA+G++ E R + + +A + G I+Q+PS SA+ Sbjct: 62 GTSKTYTATIRLGETTITDDAEGEVTEARTAAHITDDAVAVGVAALTGPIQQVPSSVSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYEL---LFIRHEGN---ELELEIHCSKGTYIRTI 183 K G++ Y R G EV ARP+T++ R +G ++++ + CS GTYIR + Sbjct: 122 KVNGERSYARVRSGEEVKLAARPVTIHRFDVHSITRIDGGRVVDVDVTVECSSGTYIRAL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVT 215 DLG LG G H+ LRR V Y +++ T Sbjct: 182 ARDLGNALGIGGHLTALRRTQVGPYSLDQART 213 >UniRef50_C2CXC9 Possible tRNA-pseudouridine synthase I n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CXC9_GARVA Length = 400 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 125/227 (55%), Gaps = 22/227 (9%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+LL+DKP+G++S+D + + + + R GH G LDP+ATG+L + G AT+ YLL Sbjct: 10 GILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGH 69 Query: 73 DKRYRVIARLGQRTDTSDADGQIV----EERPVTFSA-------EQLAAALDTFRGDIEQ 121 DK Y + RLG+ T+T DADG +V +E + SA E F G I Q Sbjct: 70 DKTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQ 129 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---------ELELEI 172 P+ +SA+K G + Y+ AR+G +V E R + +++ + N ++ I Sbjct: 130 TPTAFSAIKINGVRAYDLAREGKDVHLEPREVVIHDFSLLDARFNVGVSGAKVVDVRASI 189 Query: 173 HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE--RMVTLE 217 CS GTYIR + DLG LG G H++ LRR + ++ VE R++ LE Sbjct: 190 SCSSGTYIRALARDLGRVLGVGGHLVSLRRTRIGEFSVEDDRVLKLE 236 >UniRef50_B9MR51 tRNA pseudouridine synthase B n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR51_ANATD Length = 290 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/210 (38%), Positives = 122/210 (58%), Gaps = 1/210 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVLL+DKP G++S+D ++ V++++N +AGH G LDP ATG+L I LGEATK S + Sbjct: 1 MNGVLLVDKPVGITSHDVVEFVRKVFNV-KAGHAGTLDPFATGLLVILLGEATKLSSFFT 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y + G RTDT D G+I E+ V +++ +G+IE ++SA K Sbjct: 60 SQEKTYIATMQFGIRTDTLDITGKIKEKNSVIVEEKEIEECFKILKGEIELKVPIFSAKK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+KLYEYAR+GI + +Y + I LE ++ CS GTYIR++ + + E Sbjct: 120 LNGRKLYEYARKGINIEIPKVKSIIYNIEIINFSYPYLEFKVQCSHGTYIRSLAEKIAEN 179 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 L + LRR+ + ++ VTL +R Sbjct: 180 LSTVGLLSELRRIRSGFFDLKDAVTLSDIR 209 >UniRef50_D0WR19 tRNA pseudouridine synthase B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WR19_9ACTO Length = 345 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 89/237 (37%), Positives = 132/237 (55%), Gaps = 12/237 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ ++DK G++S+D + V+R+ + GH G LDP+ATG+L I LG ATK +Y+ Sbjct: 14 DGLAVIDKDPGVTSHDVVGAVRRLAGTKKVGHAGTLDPMATGVLCIGLGRATKLLRYVTG 73 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y R G T T DA G++V R A +LA A+ G++ Q+PS SALK Sbjct: 74 TAKEYEATIRFGIETSTEDAQGELVRARGAREADAAELARAMANLTGEVLQVPSSVSALK 133 Query: 131 YQGKKLYEYARQGIEVPREARPI--TVYELL----FIRHEGN---ELELEIHCSKGTYIR 181 +G++ Y+ R+G EV +ARPI V+E + F G +L++ + C GTY+R Sbjct: 134 VEGRRAYDLVREGREVVLDARPIRVDVFEAVGGPRFAEACGAPVFDLDVRVVCGAGTYVR 193 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 + DLGE LG GAH+ LRR V + V V++ + VE Q +P L D Sbjct: 194 ALARDLGEALGFGAHLTSLRRTRVGPWDVGEAVSVRECADAVEADGQ--MPVHTLAD 248 >UniRef50_C4V3N1 tRNA pseudouridine 55 synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3N1_9FIRM Length = 290 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 123/220 (55%), Gaps = 4/220 (1%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + + KP GMSS+D + V+RI++ R GH G LDP A G+LPI LG A + +YL Sbjct: 1 MDGFINVLKPTGMSSHDVVDVVRRIFHQKRVGHAGTLDPAAAGILPIALGRAARLVEYLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVE--ERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 +DK YR G TDT D G + E E PV +AE++ A L FRG I Q P YSA Sbjct: 61 GADKSYRAEIAFGYATDTGDVYGMVTERSEHPVLPAAEEIEAVLARFRGCITQRPPAYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVY--ELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 +K GK+ + RQG V R +T++ ELL I + +++ CSKGTYIR++ D Sbjct: 121 IKVGGKRAADLVRQGRAVDIPPRKVTIHRLELLHIDAVRQRIRIDVDCSKGTYIRSLCAD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 +G L A + +L R V + + T E L E E A Sbjct: 181 IGAGLHLPATMRFLLRSRVGAFTLADAYTPEELAEAGEDA 220 >UniRef50_D2Q8K5 TruB tRNA pseudouridine synthase B n=6 Tax=Bifidobacterium RepID=D2Q8K5_9BIFI Length = 362 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 131/242 (54%), Gaps = 45/242 (18%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +I+G+L++DKPQG++S+D + ++ + R GH G LDP+ATG+L I G AT+ Y+ Sbjct: 7 EISGLLVVDKPQGVTSHDVVAAIRGALHMKRVGHAGTLDPMATGVLVIGFGNATRLLNYI 66 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQ-------IVEERPVTFSAEQLAAALDTFRGDIEQI 122 +D K Y RLGQRT T DADG+ I E P + E++ A + F G IEQ+ Sbjct: 67 VDHSKTYLATIRLGQRTATDDADGELLEPSAPIAEAFPSRETVERVIA--ERFTGRIEQV 124 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF--IRH----------------- 163 P+ YSA+K G++ Y+ AR+G +V +ARP+TV E +R+ Sbjct: 125 PNSYSAIKINGQRAYDLAREGKQVELKARPVTVEEFRVDAVRYGYASTRFADAPLTDAQD 184 Query: 164 --EGN---------------ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVS 206 G EL++ + CS GTYIR + DLGE LG G ++ LRR+ + Sbjct: 185 IGAGERWHPVSAAPDVRPVMELDVAVSCSAGTYIRALGRDLGEALGLGGYLTMLRRIRIG 244 Query: 207 KY 208 + Sbjct: 245 DF 246 >UniRef50_C1E906 Predicted protein n=5 Tax=Eukaryota RepID=C1E906_9CHLO Length = 230 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 85/217 (39%), Positives = 124/217 (57%), Gaps = 6/217 (2%) Query: 14 VLLLDKPQGMSSNDALQKVK---RIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 VLL+DKP+G +S D + K + R + + GH G LDP ATG+L +C+G+ATK Sbjct: 2 VLLIDKPKGWTSFDVVGKTRWLSRRMGSKKVGHCGTLDPNATGLLILCVGKATKMVDSFT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y +LG+ T + D ++ E P S LAA GDI+QIP M+SA+ Sbjct: 62 GMDKVYTGTMKLGEGTPSQDCCEEVDERLPWEHVSDADLAAGAKAMEGDIKQIPPMFSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITV--YELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 K +G++LY+ AR+G V R+ R T+ +E+ + + + CSKGTY+RT+ DL Sbjct: 122 KVKGERLYKAARRGETVERKERACTINSFEVWRDKVDSQLAHFRVDCSKGTYVRTLAHDL 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 G LG AH+ LRR ++ ++ VE T+E L E E Sbjct: 182 GRNLGTVAHLTELRRESIGEHSVEDAWTVESLFEACE 218 >UniRef50_C2KR47 Possible tRNA-pseudouridine synthase I n=2 Tax=Mobiluncus mulieris RepID=C2KR47_9ACTO Length = 371 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 110/317 (34%), Positives = 149/317 (47%), Gaps = 53/317 (16%) Query: 7 RGRDIN-GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKF 65 RG D G+L++DKPQG++SN L +V+RI + G+ G LDP+ATG+L LG+ATK Sbjct: 17 RGADCGAGLLVVDKPQGLTSNQVLSRVRRIAGQKKVGYAGTLDPMATGLLIFALGKATKL 76 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ-LAAALDTFRGDIEQIPS 124 QYL SDK Y R G TDT DA G +V LA +L +RG I Q+PS Sbjct: 77 LQYLGSSDKAYVARVRFGVSTDTDDAAGTVVGAAGAGGLTGSVLADSLGAYRGAIHQVPS 136 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLF---------------------IRH 163 +SA+K G++ Y ARQG +V ++RP+T+ L R+ Sbjct: 137 SFSAIKVAGQRAYALARQGQDVKLKSRPVTISRLELESGLAPHEIDVSIGRAAQETTPRN 196 Query: 164 EGNE-----------------------LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYL 200 G E +++ + CS GTYIR + DLG LG GAH+ L Sbjct: 197 PGGENPGATGGGAALAAADGGRVTVADVDIAVECSAGTYIRALARDLGRDLGTGAHLTAL 256 Query: 201 RRLAVSKYPVERMVTLEHL-RELVEQAEQQDIP---AAELLDPLLMPMDSPASDY---PV 253 RR V Y +E L L E+ Q IP A + L P L ++ A Sbjct: 257 RRTRVGNYGLEAARNLAELGEEVATQGIISIIPLDAAVKALFPTLELDETQARALGYGQT 316 Query: 254 VNLPLTSSVYFKNGNPV 270 V LP S + N P+ Sbjct: 317 VTLPSPSPALYNNNQPL 333 >UniRef50_Q14NU4 Putative trna pseudouridine synthase b protein n=1 Tax=Spiroplasma citri RepID=Q14NU4_SPICI Length = 303 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 126/218 (57%), Gaps = 6/218 (2%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ L++KP G +SN +Q++K+ N+ GH G LDPLATG+L + + ATK S+YLL Sbjct: 3 DGIFLINKPTGKTSNQVIQEIKQKLEINKIGHAGTLDPLATGLLVVLINNATKMSEYLLT 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDI-EQIPSMYSAL 129 +DK Y V RL TDT D G ++ + P + L + F G + EQ P YSA+ Sbjct: 63 ADKAYDVEMRLFIETDTGDITGNVLNKTAPFKIQKKVLKKIFNEFNGFMYEQYPPKYSAI 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDL 187 K GKKLYEYARQ EV + R +T+ + +++ + ++ + C+KGTYIR+++ D+ Sbjct: 123 KVNGKKLYEYARQDKEVKIKPRTVTIKAIKLKKYDAHNHTIKFSVLCTKGTYIRSLVTDI 182 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLE--HLRELV 223 KL A V L R + + + ++ E + EL+ Sbjct: 183 AAKLNTIATVTALCRTQSGNFLLSKAISPETVNFNELI 220 >UniRef50_C7NH20 tRNA pseudouridine 55 synthase n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NH20_KYTSD Length = 348 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/255 (37%), Positives = 140/255 (54%), Gaps = 21/255 (8%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSRP +G+L+LDKP G +S+D + + + + + GH G LDPLATG+L + +G Sbjct: 1 MSRP---APAPDGLLVLDKPSGPTSHDIVSRCRWLCATRKVGHAGTLDPLATGVLLVGVG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI-----VEERPVTFSAEQ-LAAALDT 114 AT+ +L+ +DK YR RLG+ T T DA G+ V +R + Q L A + Sbjct: 58 RATRLLTHLVGADKTYRATVRLGEGTTTEDAQGKFTQTTGVPDRDALLADPQPLRDACNA 117 Query: 115 FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITV--YELLFIR----HEGNE- 167 G++ Q+PS SALK GK+ + R G E EARP+TV +ELL ++ G E Sbjct: 118 LSGELMQVPSTVSALKVGGKRAHARVRDGEEFELEARPVTVHAFELLDVQPAQGASGTEV 177 Query: 168 --LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 L++ + S GTY+R + DLG LG AH+ LRR AV + + + + ELVE Sbjct: 178 LDLDVRVRVSSGTYVRALARDLGGSLGTAAHLTALRRQAVGGF---TLASATPVDELVEA 234 Query: 226 AEQQDIPAAELLDPL 240 E +PA+ + P+ Sbjct: 235 REGGALPASMPVLPM 249 >UniRef50_Q0C5Z2 tRNA pseudouridine synthase B n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C5Z2_HYPNA Length = 313 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/272 (33%), Positives = 138/272 (50%), Gaps = 10/272 (3%) Query: 1 MSRPRRR-GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R R+R G + G + L KP M+S A+ +KR+YNA + GH G LDPLA G+LPI L Sbjct: 1 MARQRKRKGEPVTGWINLFKPVDMTSTQAVAIIKRLYNAEKVGHGGTLDPLADGILPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 G+ATK Q+ +D+ K Y R G T + DA+ +I V + AAL + G I Sbjct: 61 GQATKTVQWAMDAHKEYVFTIRWGISTASQDAEAEITATSDVRPERAAIEAALTRYVGTI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGT 178 +Q+P YSA+K G++ Y+ R+G EAR + V+ I + + + + KG Sbjct: 121 QQVPPKYSAIKVAGERAYDLVREGEAFELEAREVDVHAANVIGMPDADHTVIHVVSGKGF 180 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 Y+R + DL LG H+ LRR V + V++E L L ++D P L Sbjct: 181 YVRALARDLAFDLGAEGHISQLRRTRVGAFDAPSAVSIEALEAL-----KEDKPG---LM 232 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPV 270 +L P+ + S P V + + + G V Sbjct: 233 AILKPLHAVLSGMPQVQVSPHDAANIRQGRSV 264 >UniRef50_P59881 tRNA pseudouridine synthase B n=15 Tax=Cyanobacteria RepID=TRUB_PROMM Length = 320 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/209 (37%), Positives = 128/209 (61%), Gaps = 8/209 (3%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G +++DKP G++S+D + +++R++ R GH G LDP TG+LPI LG AT+ YL + Sbjct: 6 GFVVIDKPAGITSHDCVSRMRRVFGIKRVGHGGTLDPAVTGVLPIALGHATRLLPYLPGA 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR +LGQRT + D G ++ ++ + ++ A L+ FRG I+Q P SA+ Sbjct: 66 -KSYRGSIQLGQRTSSDDQQGDLISKQAWPELNTAEIEAYLEPFRGRIQQRPPQVSAVHV 124 Query: 132 QGKKLYEYARQG--IEVPREARPITV--YELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 QG++ + AR+G +E+P AR IT+ +LL + +++ +HCS GTYIR++ DL Sbjct: 125 QGERAHARARRGETMEIP--ARTITIDRLQLLNWNQQLGQIDFNVHCSSGTYIRSLARDL 182 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTL 216 GE +GCGA + +L+R + ++ V L Sbjct: 183 GELIGCGACLGWLKRTQALGFHEQQAVPL 211 >UniRef50_C0W0C7 Possible tRNA-pseudouridine synthase I n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0C7_9ACTO Length = 339 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/316 (30%), Positives = 154/316 (48%), Gaps = 28/316 (8%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 PR +G+++++KP G++S+D + +R+ + GH G LDP+ATGML I +G+AT Sbjct: 21 PRAETTAADGLIIINKPAGVTSHDVVSASRRLSATRKVGHAGTLDPMATGMLIIGVGKAT 80 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFS-----AEQLAAALDTFRGD 118 + Y+ +DK Y +LG TD+ DADG+I + + +++ A + F GD Sbjct: 81 RLLHYITGADKGYLARIQLGVSTDSDDADGEITAVNSIPGTRLFGLTKEIDAQMRYFVGD 140 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITV------YELLFIR-------HEG 165 I Q P+ SA+K GK+ + R G E+ ARP+ V E+ F+ + Sbjct: 141 IMQRPTTVSAIKVNGKRAHALHRAGEEIELAARPVHVAKFARMSEVEFVEVTLDDEPYTF 200 Query: 166 NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 E ++ + CS GTY+R + DLG LG GAH+ +L R V + +M L + E Sbjct: 201 AEFDVVVECSSGTYVRALARDLGAALGLGAHLTHLHRYRVGSWTASQMRELTDIS--AEV 258 Query: 226 AEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTE 285 AE + L D L +Y + L ++ NGN R + + + V Sbjct: 259 AENGQVQVISLTDACL-------QEYDGLELNEVQAIALCNGNTTRLTADATKSPI-VAA 310 Query: 286 GENGKFIGMGEIDDEG 301 NG+ G+ E D G Sbjct: 311 LYNGQVRGLLERDGNG 326 >UniRef50_A6LLV6 tRNA pseudouridine synthase B n=1 Tax=Thermosipho melanesiensis BI429 RepID=TRUB_THEM4 Length = 304 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/198 (39%), Positives = 117/198 (59%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L L KP+G++S+D + +V+R N R GH G LDP A G+L + +G T+ +YL Sbjct: 3 GFLNLYKPKGVTSHDVVDEVRRKLNIRRVGHAGTLDPFAEGVLVVGVGSTTRLLEYLQVE 62 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 KRY V A LG T+T D G+IVEER E++ + +F G +Q+P YSA KY+ Sbjct: 63 RKRYYVKALLGVITETFDITGEIVEERECNIPDERIIDVVKSFVGKYKQVPPAYSAKKYK 122 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 G++LY+ AR+G + + +Y + I + E+ SKGTYIR++ D+G KLG Sbjct: 123 GERLYKLAREGKIISLPPVDVEIYGIDKIIVKKPHFSFEVEVSKGTYIRSLCMDIGYKLG 182 Query: 193 CGAHVIYLRRLAVSKYPV 210 CGA L+RL+V + + Sbjct: 183 CGATAKELKRLSVGTFDI 200 >UniRef50_C0GUB0 tRNA pseudouridine synthase B n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUB0_9DELT Length = 309 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 88/266 (33%), Positives = 137/266 (51%), Gaps = 13/266 (4%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GV++L+KP+G +S L K+K + + GH G LDP+A G+L LG+ATK + Y+ + Sbjct: 14 DGVMVLNKPEGPTSTACLNKIKSRFKLKKLGHAGTLDPMARGVLVALLGQATKLAPYITE 73 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y + RLG TDT D G ++EE+ + S E + + ++ EQ SA K Sbjct: 74 GRKTYWGVIRLGVSTDTYDMQGTVLEEKDCSEVSPETIEREIKSWEDLKEQPVPAVSAAK 133 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +QGK Y AR G EVP + + I +Y+ + E +E I CS GTY+R++ LG + Sbjct: 134 HQGKPFYALARAGQEVPCKTKEIDIYQAQVLNIEPPLVEFRITCSAGTYVRSLAHSLGMR 193 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 +GC A + L R + +++ V L+ L E A L+ L+P+ S Sbjct: 194 VGCCAALAELVREKSHPFSLDQAVDLDTLME------------ARDLNEHLLPIPRAMSH 241 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAP 276 + V L + +NG P+ AP Sbjct: 242 WEHVRLDPEQEAFVRNGRPIEARNAP 267 >UniRef50_B9KZ57 tRNA pseudouridine synthase B n=2 Tax=Thermomicrobia (class) RepID=B9KZ57_THERP Length = 302 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 150/296 (50%), Gaps = 14/296 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+LL+DKP+G +S+D +Q V+ GH G LDP A G+L I +G AT+ ++ Sbjct: 1 MHGILLVDKPRGWTSHDVVQWVRTRLRVQTVGHGGTLDPAAEGLLVIAVGIATRLVRHAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF---SAEQLAAALDTFRGDIEQIPSMYS 127 D+DK Y LG T + D +G+ + P++ S + +AL F G+ EQ P +YS Sbjct: 61 DADKSYVAHIVLGTGTTSDDLEGEPLAASPLSLYRPSLRDVQSALAEFLGEYEQQPPIYS 120 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 ALK G Y AR G VP + R + V L +++ +L + + C KG Y+R+ DL Sbjct: 121 ALKVGGVAAYRRARAGQPVPLKRRVVRVNSLRLVQYSYPDLIVSLDCGKGFYVRSFARDL 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM-DS 246 G +LG GA++ L R V ++ + +++ L ++ + PL+ D Sbjct: 181 GTRLGTGAYLHGLVRTRVGRFSLASAWSIDELNRVLTPSSW----------PLIARHPDE 230 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 ++ PV+ +P + +G PVR S + G +G +IG+ D + R Sbjct: 231 FVAELPVLLVPERELRAWYHGAPVRCSASSSPGTTARAYAPDGNWIGLAHFDPQKR 286 >UniRef50_P59880 tRNA pseudouridine synthase B n=2 Tax=Prochlorococcus marinus RepID=TRUB_PROMA Length = 313 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 133/231 (57%), Gaps = 10/231 (4%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L+++KP G++S+D + +++RIY R GH G LDP TG+LPI +G+AT+ + L S Sbjct: 7 GFLVINKPAGLTSHDCVNRLRRIYGIKRIGHGGTLDPAVTGVLPIAIGKATRLLSF-LPS 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ-LAAALDTFRGDIEQIPSMYSALKY 131 K Y +LG T+T D G+ + E E + L+ F+G+I+Q P ++S++ Sbjct: 66 PKTYEGTIKLGISTNTDDLTGETISEHSWDQVKENSILNCLNKFQGEIKQCPPIFSSVHI 125 Query: 132 QGKKLYEYARQG--IEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G++ Y+ AR+G E+P + I +L+ + ++LE+HCS GTYIR++ D+G+ Sbjct: 126 NGERAYKKARRGEFFELPPKLIKIYRIKLINWNKKDGTIDLEVHCSPGTYIRSLARDIGK 185 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 KLGCG + L R + +++ + EL + + D+ ++DPL Sbjct: 186 KLGCGGALAKLNRTMALGFNIDQAI------ELPDLDKNNDLNKPMIIDPL 230 >UniRef50_UPI00004C24EE COG0130: Pseudouridine synthase n=1 Tax=Streptococcus pyogenes M49 591 RepID=UPI00004C24EE Length = 197 Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 78/195 (40%), Positives = 114/195 (58%), Gaps = 8/195 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ L K GM+S+DA+ K++++ + GH G LDP G+LPI +G+AT+ +Y++ Sbjct: 2 INGIINLKKEAGMTSHDAVFKLRKLLQEKKIGHGGTLDPDVVGVLPIAVGKATRVIEYMI 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 ++ K Y LG T T DA G++V P + E + + TF G I Q P MYSA Sbjct: 62 EAGKVYEGQVTLGYSTTTEDASGEVVARSSLPAVLTEELVDQTMTTFLGKITQTPPMYSA 121 Query: 129 LKYQGKKLYEYARQG--IEVPREARPITVYE----LLFIRHEGNELELEIHCSKGTYIRT 182 +K G+KLYEYAR G +E PR I+++E L F ++ CSKGTY+RT Sbjct: 122 VKVNGRKLYEYARAGESVERPRREVTISLFERTSPLNFTEDGLCRFSFKVACSKGTYVRT 181 Query: 183 IIDDLGEKLGCGAHV 197 + DLG LG +H+ Sbjct: 182 LAVDLGRALGVESHM 196 >UniRef50_A5IIS7 tRNA pseudouridine synthase B n=9 Tax=Thermotogaceae RepID=TRUB_THEP1 Length = 309 Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 133/229 (58%), Gaps = 2/229 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L+ KP+G +S+D + +V++ + GH G LDP A G+L I + + T+ ++ D Sbjct: 3 HGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y V RLG T+T D G++VEER + E++ A+ +F G+ +Q+P YSA K+ Sbjct: 63 LKKVYWVKMRLGLITETFDITGEVVEERECNATEEEIREAIFSFVGEYDQVPPAYSAKKH 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 +G++LY+ AR+G + + + ++++ + EG ++ S GTYIR++ D+G KL Sbjct: 123 KGERLYKLAREGKIINLPPKRVKIFKIWDVNVEGRDVSFRAEVSPGTYIRSLCMDIGYKL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 GCGA + L R +V Y +E +L E+ E + IP + L+ L Sbjct: 183 GCGATAVELVRESVGSYTIEE--SLNVFEAAPEEIENRIIPLEKCLEWL 229 >UniRef50_D1IN94 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IN94_VITVI Length = 502 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 121/216 (56%), Gaps = 3/216 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+L++KP+G +S K++R+ + GH G LDP+ATG+L +C+G+ATK + Sbjct: 285 VVLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMATGLLIVCVGKATKLVESYQGMV 344 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y I RLG+ T T DAD +++ P E + +F G+I Q+P M+SA+K Sbjct: 345 KGYSGIFRLGEATSTWDADSPVIQREPWEHIKDENIKKTAASFCGEIWQVPPMFSAIKVG 404 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLGEK 190 G+K+YE AR+G V R I++++ R + L + CSKGTYIR++ D G+ Sbjct: 405 GEKMYEKARRGESVELSPRRISIFKFDIERSLDDRQNLVFRVTCSKGTYIRSLCADFGKA 464 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 LG AH+ LRR ++ Y + + L E + + Sbjct: 465 LGSCAHLAALRRDSIGPYSADDAWEFKDLEEAITKG 500 >UniRef50_B1MZH0 tRNA pseudouridine synthase B n=3 Tax=Leuconostoc RepID=B1MZH0_LEUCK Length = 315 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 93/270 (34%), Positives = 146/270 (54%), Gaps = 24/270 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV++++KP+G++S D + KV+R + GH G LDP +G+L + LG+ATK L Sbjct: 20 VDGVIVINKPRGVTSFDVVAKVRRAIGQKKVGHAGTLDPDVSGVLVVALGKATKLIDELQ 79 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 KRY LG T+T D G+I+ E+ +T +S +Q+ A+ + G I+Q+P MYSA Sbjct: 80 SRPKRYVGDITLGFATETEDLSGEIISEKEITVPYSDQQIDEAIQSLNGSIKQVPPMYSA 139 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYE-----LLFIRHEGNELELEIHCSKGTYIRTI 183 +K GK+LYEYAR V R R +Y+ L+ H+ + + E SKGTYIRT+ Sbjct: 140 VKVAGKRLYEYARAVETVTRPIREAHIYDFHRTSLVDYAHQQQKFDFEATVSKGTYIRTL 199 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA-EQQDIPAAELLDPLLM 242 D G +LG A + L R+ S + + + L + A ++ IP ++LL Sbjct: 200 AVDTGRQLGMPATMTRLERVMGSGMTLSQAIELNDVMTWPRTAILEKVIPISKLL----- 254 Query: 243 PMDSPASDYPVVNLPLTSSVYF--KNGNPV 270 ++P+ PLT +F KNG + Sbjct: 255 -------NWPI--KPLTDDEWFAVKNGQVI 275 >UniRef50_D1AL32 tRNA pseudouridine synthase B n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL32_SEBTE Length = 280 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 131/239 (54%), Gaps = 5/239 (2%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++LL+K + +SS A+ +K + GH G LDPLA G++ + + ATK S LL Sbjct: 1 MDGIILLNKEKDISSFKAINNLKYKLKLKKVGHAGTLDPLAEGLMIVLVNNATKLSDMLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQI--VEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG TDT D G+ V + ++ E++ L+ F+G+ EQ P MYSA Sbjct: 61 KQSKEYYAECELGYETDTYDCTGEKTQVYDGEISVDKEKITDILEDFQGEYEQTPPMYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K GKKLY+ AR+GIEV R+++ + + + I GN++ IH GTYIR++I D G Sbjct: 121 IKINGKKLYDLARKGIEVERKSKTVNIEYINRISINGNKIGFYIHAGSGTYIRSVIQDFG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRE---LVEQAEQQDIPAAELLDPLLMPM 244 +LG A + L R + K+ +E + + + L+ + D PA ++ D M Sbjct: 181 RRLGTYATMTKLIRTKIGKFSLENAYREKEISDDSVLLSVEKIFDYPALDVTDEECFKM 239 >UniRef50_D2NNU2 Pseudouridine synthase n=2 Tax=Rothia mucilaginosa RepID=D2NNU2_9MICC Length = 365 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 128/251 (50%), Gaps = 37/251 (14%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++++DKP GMSS+DA+ +++RI R GH G LDP ATG+L + + +ATK YL+ Sbjct: 10 SGLMVIDKPAGMSSHDAVSQMRRIAGTRRVGHAGTLDPAATGVLILGINKATKLLTYLVG 69 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERP------VTFSAEQLAA----ALDTFRGDIEQ 121 DK Y RLG T T DA+G+ P AEQ+ A A+ GDI Q Sbjct: 70 QDKTYDATIRLGIETLTEDAEGEHTAAHPDAVEALTGMDAEQMRARILEAVAQLSGDILQ 129 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH----------------EG 165 +PS SA+K G + Y R G +V ARP+T+ E F H EG Sbjct: 130 VPSAVSAIKINGVRSYARVRSGEQVELVARPVTISE--FTVHSVTAGFAEYVIEDPENEG 187 Query: 166 NEL---------ELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTL 216 + ++ + CS GTYIR + DLG+ LG G H+ LRR V +E L Sbjct: 188 EHMATSVPVIDCDVTVSCSSGTYIRALARDLGKILGTGGHLTALRRTRVGAVVLEDAADL 247 Query: 217 EHLRELVEQAE 227 L++ E++E Sbjct: 248 AQLKQRREESE 258 >UniRef50_A4S143 Predicted protein n=3 Tax=Mamiellales RepID=A4S143_OSTLU Length = 279 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/217 (37%), Positives = 124/217 (57%), Gaps = 7/217 (3%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIY---NANRAGHTGALDPLATGMLPICLGEATKFSQY 68 N +L+DKPQ +S D + +V+R+ + GH G LDP+ATG+L +C+G+ATK + Sbjct: 45 NMTILMDKPQKYTSFDVVARVRRLSRERGVKKVGHCGTLDPMATGLLILCVGKATKSVEE 104 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE-QLAAALDTFRGDIEQIPSMYS 127 DK Y +LG+ T + DAD ++ E P + +L G I+Q+P MYS Sbjct: 105 YSGMDKTYTGTIKLGEGTPSQDADEEVNEREPWEHVTDVELREGARKLTGAIKQLPPMYS 164 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIID 185 A+K GK+LY+ AR+G+EV R+ R + ++E R + + H SKGTY+RT+ Sbjct: 165 AIKVNGKRLYKSAREGVEVERKHRDVVIHEFEVERDAEDAQIVHFSAHVSKGTYVRTLAY 224 Query: 186 DLGEKLGCGAHVIYLRRLAV-SKYPVERMVTLEHLRE 221 DL + LG H+ LRR + S++ VE T+E L E Sbjct: 225 DLCKSLGTTGHLTALRRTKIGSEFDVEDAWTIEQLAE 261 >UniRef50_C7LXY6 tRNA pseudouridine synthase B n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LXY6_ACIFD Length = 298 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 103/311 (33%), Positives = 155/311 (49%), Gaps = 30/311 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I G+ L+DKP G +S+D + + +R + R GH G LDP+A+G+L + + AT+ +YL Sbjct: 2 IQGIYLVDKPSGPTSHDVVARARRAFGTRRVGHAGTLDPMASGLLVLGVDRATRLLRYLE 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 KRYR +A LG TDT D DG +V+ RPV + E + A F +Q+P YSAL Sbjct: 62 AQTKRYRAVALLGVATDTDDLDGVVVDRRPVEEPTREAVVTACRRFVPGYDQVPPAYSAL 121 Query: 130 KYQGKKLYEYARQG--IEVPREARPITVYELLFIRHEGN-------ELELEIHCSKGTYI 180 G++ Y AR+G + +PR I E+ I +G +EL + C GTY+ Sbjct: 122 HLDGERAYVRARRGEDVTLPRRRVRIDEIEVGAIWRDGGPGEPQGVRVELTVTCGPGTYL 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R+++ DLGE LG A + LRR V + V + V LE L E P+ Sbjct: 182 RSLVRDLGEALGTPATLASLRRERVGRLEVAQAVGLEDL---------------ERATPV 226 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 +P+ + V L + F +G + EG V V G G ++G+ D Sbjct: 227 PLPL--ALAGLGRVELDGVDATRFLHGQRIEAPSGLDEGDVLV--GAEGSWLGVASCDGH 282 Query: 301 GRVAPRRLVVE 311 +APR ++V+ Sbjct: 283 -VLAPRVVLVD 292 >UniRef50_C9KKC7 tRNA pseudouridine synthase B n=3 Tax=Veillonellaceae RepID=C9KKC7_9FIRM Length = 298 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 104/309 (33%), Positives = 157/309 (50%), Gaps = 20/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP GMSS+D + V+++ + R GH G LDP A G+LPI +G+A + +YL Sbjct: 2 MDGFLNILKPPGMSSHDVIGAVRKVLHMKRVGHAGTLDPAAAGVLPIAVGQAARLIEYLE 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQ-LAAALDTFRGDIEQIPSMYSA 128 +DK YR G TD+ D G+I EE T ++Q + AL F G I Q P +SA Sbjct: 62 LADKTYRAELTFGFATDSGDDTGEITEEVTDFTMPSQQAIEHALLGFTGKIRQTPPAHSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDD 186 +K GK+ + R+G EV +R +T++ L + + E ++ ++ CSKGTYIR++ D Sbjct: 122 IKIGGKRACDLLREGKEVEIPSREVTIHALDIVAYHPEEKKILFDVQCSKGTYIRSLCLD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G LG A + +L R V + + +TLE EL E E + A L L Sbjct: 182 IGAALGLPATMSFLVRSRVGDFALADALTLE---ELAEAGESAILEPAHFLSHLERYDLD 238 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR-VAP 305 P + P N G R P ++RV G+F+G+G D + V P Sbjct: 239 PRREKPFCN---------GLGTGERRH-VPETDILRVYSA--GRFLGIGRYDRRSQEVIP 286 Query: 306 RRLVVEYPA 314 ++V PA Sbjct: 287 AKVVCREPA 295 >UniRef50_B0S1E2 tRNA pseudouridine 5S synthase n=2 Tax=Finegoldia magna RepID=B0S1E2_FINM2 Length = 287 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 156/294 (53%), Gaps = 25/294 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++ V+ + K +G +S D + K I + GH G LDP ATG+L + +G+ TK ++YL+ Sbjct: 1 MDCVINVFKEKGYTSQDVVSICKGILKTKKIGHAGTLDPDATGVLLLGVGKGTKITEYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGD-IEQIPSMYSAL 129 + K Y G TDT D G + T+ E+L LD G IEQ+P MYSA+ Sbjct: 61 EHGKTYIFEMCFGTSTDTLDLSGNVTGFSEKTYDKEKLKKILDDLNGKTIEQVPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYEL--LFIRHEGNELELEIHCSKGTYIRTIIDDL 187 K GKKLYEYAR+ E+ R++R IT++ + L+I N +++ CSKGTYIR +I+D+ Sbjct: 121 KVNGKKLYEYARENKEIKRKSRKITIFNIEPLYILE--NSCIIKVRCSKGTYIRVLIEDI 178 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 +KL A++ L R+ + ++ V ++ LR + +D+ + + L M S Sbjct: 179 AKKLDKLAYMKSLIRVNSGGFDIKDSVKIDSLR----KCNIEDVSFS--VYESLTEMKS- 231 Query: 248 ASDYPVVNLPLTSSVYFK--NGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 + L S+Y K NG + ++ + + + +FIG+G I+D Sbjct: 232 --------IELDESLYKKITNGVKINIVHDNIDNIKVICK---DRFIGIGSIED 274 >UniRef50_B7ICP6 tRNA pseudouridine synthase B n=1 Tax=Thermosipho africanus TCF52B RepID=B7ICP6_THEAB Length = 306 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 132/239 (55%), Gaps = 5/239 (2%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L KP+G++S+D + ++++ + GH G LDP A G+L I + AT+ +YL + Sbjct: 3 GFLNAFKPKGVTSHDVIDELRKKLKTKKIGHAGTLDPFAEGVLVIGISGATRLLEYLKNE 62 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 KRY V A LG T+T D GQ+ EER S +++ A+ F+G +Q+P YSA KY Sbjct: 63 KKRYYVKAILGLITETFDITGQVKEERVCQKSNDEIKNAILAFKGKYKQVPPAYSAKKYN 122 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 G++LY+ AR+G + + +YE+ I+ E E+ S GTYIR++ D+G KLG Sbjct: 123 GERLYKLAREGKIISLPPVEVEIYEIENIKIVPPEFSFEVVVSPGTYIRSLCMDIGYKLG 182 Query: 193 CGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 CGA + L R +V K+ ++ + L EQ + + E+LD +P DY Sbjct: 183 CGATAVELVRKSVGKFSIKDSINPFELSS--EQIVNRILRVEEVLD---LPQVEIYKDY 236 >UniRef50_B1X5A1 Putative tRNA pseudouridine 55 synthase n=1 Tax=Paulinella chromatophora RepID=B1X5A1_PAUCH Length = 322 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 89/234 (38%), Positives = 130/234 (55%), Gaps = 15/234 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G LLL+KP M+S + KV+R Y+ R GH G LDP TG LP+ +G AT+ Y L + Sbjct: 18 GFLLLNKPANMTSQQCVAKVRRTYSVKRVGHGGTLDPDVTGALPVAIGSATRLLPY-LPT 76 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 +K Y +LGQ T T D +G+I+ + + + E++ L+ FRG I+Q P SA+ Sbjct: 77 EKSYIGEIQLGQVTSTDDLEGEILRNKIIPKLNQEEVDKTLEKFRGIIQQRPPNISAVHI 136 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDDLG 188 G++ Y AR+G + R +TVY L I+H + L I CS GTYIR+I DLG Sbjct: 137 SGERAYTRARRGESMVIPLRTVTVYGLT-IKHWEPKTGRLRFSIRCSSGTYIRSIARDLG 195 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 E LGCG + +L+R +P+ + ++ L Q IP L+DPL++ Sbjct: 196 EVLGCGGCLAWLQRNEALGFPINIAIPMKVL-------GQNSIPP--LIDPLVV 240 >UniRef50_B7KGX7 tRNA pseudouridine synthase B n=19 Tax=Cyanobacteria RepID=TRUB_CYAP7 Length = 308 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 104/292 (35%), Positives = 151/292 (51%), Gaps = 20/292 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L L+KP G +S+D + K++R+ R GH G LDP ATG+LPI +G+AT+ + L Sbjct: 10 GFLNLNKPGGWTSHDCVAKIRRLLKIKRVGHGGTLDPAATGVLPIAVGKATRLLPF-LPE 68 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y+ RLG T+T D G+I++ + EQ+ L F G+IEQIP +SA+ Sbjct: 69 KKAYQARIRLGVTTNTDDLQGEILQIGSANHLTLEQIDPLLRQFIGEIEQIPPAFSAISQ 128 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDDLG 188 GK+LYE AR+G V +R + V ++ + E ELELEI C GTYIR+I DLG Sbjct: 129 GGKRLYELARKGELVTPPSRIVHVEKINILDWYPGEHPELELEIICGGGTYIRSIARDLG 188 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LG G + L R + + +TL L Q Q ++ PL+ P + Sbjct: 189 NLLGVGGTLANLIRTQSCGLELSKSLTLADLE---TQQHQGNL-------PLIFPQLA-L 237 Query: 249 SDYPVVNLPLTSSVYFKNGNP---VRTSGAPLEGLVRVTEGENGKFIGMGEI 297 ++L + + G + + P V+V GENG F+G+GEI Sbjct: 238 KHLLTISLSAPEARRWCQGQSIVIINSIKLPQSQSVQVV-GENGDFLGIGEI 288 >UniRef50_Q46JB9 tRNA pseudouridine synthase B n=2 Tax=Prochlorococcus marinus RepID=TRUB_PROMT Length = 314 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 126/207 (60%), Gaps = 4/207 (1%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G +++DKP G++S+D + ++++++ + GH+G LDP TG+LPI +G+AT+ YL S Sbjct: 6 GFVVIDKPSGLTSHDCVNRLRKVFGIKKIGHSGTLDPAVTGVLPIAIGDATRLISYLQGS 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ-LAAALDTFRGDIEQIPSMYSALKY 131 K YR I +LG T+T D G+I+E + + + L+ FRG+I Q P ++S++ Sbjct: 66 -KAYRGIIQLGATTNTDDMQGEIIESKAWPLITQNYINYLLENFRGEILQKPPIFSSVHI 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFI--RHEGNELELEIHCSKGTYIRTIIDDLGE 189 +G++ Y+ AR+G + + +T+ +L I + EL +++ CS GTYIR++ D+G+ Sbjct: 125 KGERAYKKARKGEKFDLIPKKVTINKLNLISWSQDKGELLVDVDCSTGTYIRSLARDIGD 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTL 216 K+GCG ++ LRR + V L Sbjct: 185 KIGCGGYLKSLRRTKAYNFIENHSVKL 211 >UniRef50_B3DQF2 tRNA pseudouridine synthase B n=6 Tax=Bifidobacterium RepID=TRUB_BIFLD Length = 387 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 126/246 (51%), Gaps = 49/246 (19%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L++DKPQG++S DA+ V+ + + GH G LDP+ATG L I G AT+ ++ Sbjct: 7 SGLLIIDKPQGVTSFDAVAAVRGALHIKKVGHAGTLDPMATGTLVIAFGHATRLLNAIVA 66 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAAL------------------- 112 DK Y RLG RT T DA+G+++ + + L+A L Sbjct: 67 HDKTYEATIRLGLRTTTDDAEGEVLVDDEARSRWQTLSAQLTEGGQSGEPTALPTASWQD 126 Query: 113 -------DTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF----- 160 F GDIEQ+P+ +SA+K G++ Y+ AR+G +V + RP+T+ E Sbjct: 127 LLTRTIATNFTGDIEQVPNTFSAIKINGQRAYDLAREGKDVELKPRPVTISEFTVLDIRS 186 Query: 161 -----------IRHEGN-------ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRR 202 +R + N ++++ I CS GTYIR + DLG++LG G ++ LRR Sbjct: 187 GFVAGEQTAEPLREDANTGAIPALDVDVRISCSSGTYIRALARDLGKELGVGGYLTRLRR 246 Query: 203 LAVSKY 208 V ++ Sbjct: 247 TRVGRF 252 >UniRef50_A4XL67 tRNA pseudouridine synthase B n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=TRUB_CALS8 Length = 287 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 142/262 (54%), Gaps = 24/262 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+LL+DKP G++S+D ++ V++++ + GH G LDP A+G+L + +GEATK S + Sbjct: 1 MNGILLVDKPVGLTSHDVVEYVRKLFKT-KVGHCGTLDPFASGLLVLLIGEATKLSSFFT 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y + G +TDT D G++ + ++ L +G++E +YSA K Sbjct: 60 QTKKTYIATMQFGIKTDTLDITGKVQLRNNIFIEQNEIEDCLKDLKGEVELSVPIYSAKK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +G+KLYEYAR+GI++ +Y + I + + ++ CS GTYIR++ +++ +K Sbjct: 120 VKGRKLYEYAREGIDIEIPKIKSIIYSIEMINYCYPYMTFKVECSHGTYIRSLAEEIAKK 179 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L A ++ LRR + ++ +L+ + E ++P+++ + Sbjct: 180 LSTVATLVQLRRAKNGVFDIKAAFSLDFISE-----------------DSIIPLENLILN 222 Query: 251 YPVVNLPLTSSVYFK--NGNPV 270 +VN SVY K NGNP+ Sbjct: 223 EIIVN----ESVYKKLINGNPL 240 >UniRef50_A6GK85 TruB (Fragment) n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GK85_9DELT Length = 385 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 125/227 (55%), Gaps = 18/227 (7%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R R+ GVLL+DKP+G +S+D + V+ GH G LDP A+G+L +C+G Sbjct: 1 MGRKRKAESRYTGVLLVDKPEGPTSHDVVGWVRWALGERSVGHCGTLDPPASGLLVVCVG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAAL-DTFRGDI 119 E TK L DKRY +G+ T T+D G+ + PV + + A L + RG + Sbjct: 61 EGTKLVDALTSVDKRYWTRLVIGRSTTTADGAGETLTTAPVDAAMLERARELVEALRGPL 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQG--IEVPREARPITVYELLFI-----------RHEGN 166 E P YSA+K GK+ + AR G +E+P+ RP+ V+ L + EG Sbjct: 121 ELPPPAYSAVKVDGKRAHALARAGELVELPK--RPMAVHALTVLGAGLEPAAATGEDEGE 178 Query: 167 E--LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE 211 + +ELE+ +KGTYIR++ ++LG +LGC AH+ LRRLA V+ Sbjct: 179 QGWIELELRVAKGTYIRSLAEELGRRLGCPAHMARLRRLACGPLTVD 225 >UniRef50_B0NZN2 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NZN2_9CLOT Length = 299 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 137/262 (52%), Gaps = 13/262 (4%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L + K + +S+D + K++ I + GHTG LDP A G+LP+CLG+ TK L Sbjct: 3 NGLLNIYKEKDFTSHDVVAKLRGILRQKKIGHTGTLDPNAEGVLPVCLGKGTKLCDMLTG 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K+Y+V + TDT D G + + + + +F G+ +Q+P MYSA K Sbjct: 63 TKKQYKVSFVFEKETDTEDIWGTVTKTHEPLKQDAPIKDTILSFVGEYDQVPPMYSAKKI 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GKKLYE AR+G + R+ I +Y++ I E+ + + CSKGTYIR++ D+G KL Sbjct: 123 NGKKLYELAREGKIIERKPERIRIYDISDIEISYPEVTMTVTCSKGTYIRSLCRDIGHKL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE--QAEQQDIPAAELLDPLLMPMDSPAS 249 GA + L R S + +E TL + E V+ + E+ IP ++ L + Sbjct: 183 QNGACMTKLVRTRSSGFQLEYAHTLSEIEEAVKTGKIEEWIIPIEKVF--LKYQKGTVKK 240 Query: 250 DYPVVNLPLTSSVYFKNGNPVR 271 DY V NGNP++ Sbjct: 241 DYDKVLF---------NGNPLK 253 >UniRef50_Q820Z5 tRNA pseudouridine synthase B n=2 Tax=Tropheryma whipplei RepID=TRUB_TROW8 Length = 383 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 13/226 (5%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 VLL+DK G++S+ A+ K++ + + GH G LDP A G+L + G AT+ +Y+ + D Sbjct: 19 VLLVDKISGITSHTAVAKIRHLTGVKKIGHCGTLDPAACGLLIMGCGTATRLIRYMSNLD 78 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPV----TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 KRY LG +T T D++G+I+ P + E + A + G I+QIPS YSA+ Sbjct: 79 KRYIATITLGTQTTTDDSEGEIIYSAPKPSLDKITLESIGRAAEKLSGTIKQIPSAYSAI 138 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G + Y ARQGI AR + V+ E N++ ++I CS GTY+R + D+G+ Sbjct: 139 KVSGNRAYNLARQGIIPKLNAREVRVHWKFLGDFENNQVHVQITCSSGTYVRALARDMGK 198 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 LG G H+ YL+RL++ + HL E+ + +++ +E Sbjct: 199 FLGVGGHLSYLKRLSIGPF---------HLHEIYREINKKEATMSE 235 >UniRef50_C4LJ77 tRNA pseudouridine synthase B n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJ77_CORK4 Length = 351 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 137/262 (52%), Gaps = 42/262 (16%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 D +G++++DKP GM+S+D + ++R+ + GH G LDP ATG+L + + TKF +L Sbjct: 3 DRSGIVIVDKPAGMTSHDVVSAMRRLMRTRKVGHAGTLDPAATGVLILGIERGTKFMTHL 62 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIV------EERPVTFSA------------------ 105 + + K Y RLG T T DA+G+ + EE + +A Sbjct: 63 VANTKSYDATIRLGFATTTDDAEGEPIPYPDDSEENSIQAAARPLISPSTRERLSLLLSK 122 Query: 106 -EQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITV--YELLFIR 162 E++ A + GDI Q PS SA+K G++ Y+ R G EV RP+TV +++ +R Sbjct: 123 PERIDRAREQLTGDIMQRPSSVSAIKVDGRRAYDRVRSGEEVSLPPRPVTVSTFDIRDMR 182 Query: 163 ---------HEGNE------LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSK 207 ++G+E L++ + CS GTYIR + DLGE LG G H+ LRR V Sbjct: 183 TATIDSGDNNDGDEDVTVIDLDVTVDCSSGTYIRALARDLGEILGVGGHLTALRRTRVGS 242 Query: 208 YPVERMVTLEHLRELVEQAEQQ 229 + ++ TL+ LR+ AEQ+ Sbjct: 243 FSLDDAKTLDQLRDEQSLAEQR 264 >UniRef50_Q0WVR7 tRNA synthase-like protein n=10 Tax=Magnoliophyta RepID=Q0WVR7_ARATH Length = 540 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/201 (38%), Positives = 119/201 (59%), Gaps = 4/201 (1%) Query: 12 NG-VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 NG VLL++KP+G +S K++R+ + GH G LDP+ATG+L +C+G+ATK Sbjct: 320 NGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQ 379 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y + RLG+ T T DAD +++ E + + AL +F G+I Q+P M+SA+ Sbjct: 380 GMIKGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAI 439 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDL 187 K G+K+YE AR+G V R I++++ R + L + CSKGTYIR++ DL Sbjct: 440 KVGGEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADL 499 Query: 188 GEKLGCGAHVIYLRRLAVSKY 208 + LG AH+ LRR ++ +Y Sbjct: 500 AKALGSCAHLTALRRDSIGEY 520 >UniRef50_D2MPT8 tRNA pseudouridine synthase B n=1 Tax=Bulleidia extructa W1219 RepID=D2MPT8_9FIRM Length = 280 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/208 (38%), Positives = 124/208 (59%), Gaps = 3/208 (1%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++ + L++KPQGM+S D + K++++ + GHTG LDP A G+L + G+ TK Y + Sbjct: 1 MDAIYLINKPQGMTSFDVIAKMRKVLQMKKIGHTGTLDPEAGGLLIVLTGKFTKCIPYCV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG+ +DT D GQI++ER +A +L + +G QIP MYSA Sbjct: 61 KDHKHYIAQFELGKASDTEDVFGQIIQERKARKHTALELNEICSSMKGRYLQIPPMYSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL-ELEIHCSKGTYIRTIIDDLG 188 K +GKKLYEYAR+G E+ R+ + + + L +RH +++ E+E S GTYIRT+I D Sbjct: 121 KIKGKKLYEYAREGKEMERKTVEVEISD-LSVRHLHDDIYEMEAVVSSGTYIRTLIVDFA 179 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTL 216 +KLG A + L+R+ + + + V L Sbjct: 180 KKLGELALMTSLKRVGIEHLSLNQSVPL 207 >UniRef50_C7R3E1 tRNA pseudouridine synthase B n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3E1_JONDD Length = 333 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 136/256 (53%), Gaps = 28/256 (10%) Query: 2 SRPR--RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 ++PR RR +G++++DKP GM+S+D + ++R+ + GH G LDP+ATG+L + + Sbjct: 20 AQPRQPRRPTAADGIIVVDKPTGMTSHDVVAIMRRLAGTRKVGHAGTLDPMATGLLVVGV 79 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGD 118 G T+ +L +DK Y RLG T + DADG + + +P + EQL AA G Sbjct: 80 GRGTRLLHFLTAADKSYTATVRLGVATVSEDADGDVTDTQPCDHVTREQLQAAAARLTGV 139 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR------HEG---NELE 169 I+Q+PS SA+K G++ Y+ R G +V AR +TV + H G ++ Sbjct: 140 IDQVPSAVSAVKIDGRRAYDRVRAGEDVVLPARSVTVSRFDIVDVVDGPPHHGVATKDVL 199 Query: 170 LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 L + S GTY+R + DL + +G H++ LRR V+++ + AE + Sbjct: 200 LSVDVSSGTYVRALGRDLAQIVGTVGHLVALRRTRVAEWTL---------------AEAR 244 Query: 230 DIPAAELLDPLLMPMD 245 +P + DP + P+D Sbjct: 245 SVPQLQDTDPTV-PLD 259 >UniRef50_Q7MBB8 tRNA pseudouridine synthase B n=3 Tax=Cyanobacteria RepID=TRUB_GLOVI Length = 292 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 97/294 (32%), Positives = 148/294 (50%), Gaps = 21/294 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L LDKP G++S+D + +++R+ R GH G LDP ATG+LP+ +G AT+ ++ L Sbjct: 1 MEGFLNLDKPAGLTSHDCIARLRRVLGERRIGHGGTLDPAATGVLPVAVGRATRLLRF-L 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR R G TDT D +G I+ + ++ L FRG I Q+P YSA+ Sbjct: 60 SEGKVYRATVRFGLSTDTDDLEGNILADAGAADLDLGRVQVHLQAFRGTISQVPPRYSAI 119 Query: 130 KYQGKKLYEYARQGIEVPREA-RPITVYELLFI-RHEGN--ELELEIHCSKGTYIRTIID 185 +G++LY+ AR+G+ + A R + + L + + G+ EL++EI CS GTYIR+I Sbjct: 120 HQEGERLYDLARRGVAIAEIAPRTVEIQALTVLDWYPGHYPELQIEIACSTGTYIRSIAR 179 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DLG LG GA + L R + +E + L VE Q PL+ P Sbjct: 180 DLGTALGTGATLARLLRTRSGPFALEASLPLAA----VEAGFQAGTV------PLIGPRT 229 Query: 246 SPASDYPV-VNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID 298 + A V + PL + P GA ++ E E +F+G+ + Sbjct: 230 ALAHLAAVHLEPPLAARWLMGQRVPGDCEGA----FAQIWECETDRFLGVAACE 279 >UniRef50_Q1AW51 tRNA pseudouridine synthase B n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AW51_RUBXD Length = 265 Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 77/174 (44%), Positives = 105/174 (60%), Gaps = 2/174 (1%) Query: 39 NRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE 98 + GHTG LDPLA+G+L + +G AT+ S+Y+ DK Y AR G +DT DADG+I+E Sbjct: 9 TKVGHTGTLDPLASGLLVLLVGRATRLSRYVTGLDKTYVATARFGAASDTLDADGEILEN 68 Query: 99 R-PVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYE 157 PV AE L AL F G+I Q+P M SA++ G++LYE R+G+EV RE R + V+ Sbjct: 69 AGPVPDEAE-LRRALPRFVGEIRQLPPMASAVRVGGRRLYELHRRGVEVEREPRLVRVHS 127 Query: 158 LLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE 211 L + + + CS GTY+RT+I DL LG A++ LRR V VE Sbjct: 128 LELLSFDPPAATFAVSCSSGTYVRTLISDLAASLGTAAYLTALRRTRVGHLRVE 181 >UniRef50_B1CB51 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CB51_9FIRM Length = 302 Score = 140 bits (352), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 95/315 (30%), Positives = 159/315 (50%), Gaps = 29/315 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGV+ ++K Q M+S+D KV++I + GH+G LDP+A G++ + +G +TK S Y+ Sbjct: 2 LNGVICINKEQDMTSHDVCFKVRKILGTKKVGHSGTLDPMAEGVMGVLVGRSTKLSSYIT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y + G+ +D+ D + + F+ + ++ F GDI Q P +YSA+K Sbjct: 62 SFDKEYIAGIKFGKDSDSYDIWTDMKDVPIPDFTKKDFKKVINRFVGDITQTPPIYSAIK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---ELELEIHCSKGTYIRTIIDDL 187 +GK LY+YA +G EV +R + + + I E N ++++ CSKGTYIR++I D+ Sbjct: 122 VKGKPLYKYALKGEEVEIPSREVCIDSIEII--ETNLPYSAKIKVSCSKGTYIRSLIHDI 179 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G LG A + L R +E +TL +L + V+ +D ++ D Sbjct: 180 GVSLGTSAVMNSLVRTKNGVLNIEDSITLSNLEDKVKSGR---------VDEVIKRDDYF 230 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGEN----------GKFIGMGEI 297 +D V++ +S NGN G + L+ T+ KFIG+G+ Sbjct: 231 LTDIHRVDVNPSSGKILLNGN-----GLIKKNLITPTDDIKPGTTVRLYLEDKFIGLGKK 285 Query: 298 DDEGRVAPRRLVVEY 312 DE + R + + Y Sbjct: 286 TDEEGILIRPIKILY 300 >UniRef50_C5RBC4 Pseudouridylate synthase n=2 Tax=Lactobacillales RepID=C5RBC4_WEIPA Length = 336 Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 137/261 (52%), Gaps = 17/261 (6%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + + R ++G++ + K +GM+S+D + K++RI + GH G LDP G+LP+ LG+ATK Sbjct: 28 KSKVRSMDGIIPIYKDKGMTSHDVVFKLRRILKMKKIGHAGTLDPNVDGVLPVALGKATK 87 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQI 122 ++L ++ K Y LG T T D DG +++ + + FS +++ + T G I QI Sbjct: 88 TIEFLQETGKIYTGSITLGIATTTEDMDGDVIQTQHLVKPFSNDEINKGMRTLTGHITQI 147 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYEL------LFIRHEGNE-LELEIHCS 175 P MYSA+K G++LY+YAR G V R R +YE F +G + S Sbjct: 148 PPMYSAVKVNGRRLYDYARAGETVERPKREAVIYEFKMTSATTFDEKKGTQTFSFLARVS 207 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 KGTYIRT+ DLG +L + + L R++ Y + + L+ + Q + Sbjct: 208 KGTYIRTLAVDLGRQLQVPSVMSQLTRISAGGYDITQAHRLDEI--------AQRMTEKG 259 Query: 236 LLDPLLMPMDSPASDYPVVNL 256 L LMP+++ + Y V L Sbjct: 260 SLGDWLMPLETAVAQYTHVEL 280 >UniRef50_C1ZEI4 tRNA pseudouridine 55 synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEI4_PLALI Length = 313 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 129/235 (54%), Gaps = 5/235 (2%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L + KP M+S D + K++R + GH G LDPLA G+L I +G AT+ ++++ Sbjct: 4 GFLNIHKPLRMTSRDVVSKIERAVRPLKVGHAGTLDPLAEGVLVIGIGPATRLTEHVQAL 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y LGQ T+T DA+GQ+ + + E + L F G I+QIP +SA+ Sbjct: 64 PKGYSATFHLGQTTETDDAEGQLSTQVDTQHLTRELIEQELTHFCGQIQQIPPRFSAVHV 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GK+ Y+ AR G + + + V++L ++ ++EL+I C GTYIR++ DLGEKL Sbjct: 124 AGKRAYDLARSGQDFELTPKTVEVHQLALTKYANPDIELQIECGSGTYIRSLARDLGEKL 183 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 CGA++ L R + + ++ + L+ L A+ Q + LL P+L +S Sbjct: 184 QCGAYMSALTRTHIGPFHLDSALRLDSLPNGFSLADLQPL----LLHPMLAFTES 234 >UniRef50_B9FM24 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9FM24_ORYSJ Length = 525 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 119/216 (55%), Gaps = 4/216 (1%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 + L KP G +S K++R+ N + GH G LDP+ATG+L +C+G+ATK Sbjct: 308 NICLSCKP-GWTSFTVCGKLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGM 366 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y + RLG+ T T DAD +++ P E + +FRG+I Q+P M+SA+K Sbjct: 367 VKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKV 426 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDLGE 189 G+K+Y+ AR+G V R I++++ R + L + CSKGTYIR++ DLG+ Sbjct: 427 GGEKMYDKARRGETVELSPRRISIHQFDIERSLEDRQNLIFRVICSKGTYIRSLCADLGK 486 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 LG AH+ LRR ++ + V + L E + + Sbjct: 487 ALGSCAHLTALRRDSIGDFSVNDAWSFAELEEQITK 522 >UniRef50_UPI000050FC6C tRNA pseudouridine synthase B n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FC6C Length = 305 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 121/215 (56%), Gaps = 10/215 (4%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 GV++ DKPQG++S+ + +++R Y + GH G LDP+ATG+L + LG TK Y+ Sbjct: 7 QGVIVCDKPQGLTSHGVVSRIRRWYGTRKVGHAGTLDPMATGVLVLGLGRGTKLLGYITG 66 Query: 72 SDKRYRVIARLGQRTDTSDADGQ-IVEERPVTFSA---EQLAAALDTFRGDIEQIPSMYS 127 K Y RLG T T DAD + + P SA + +A + RG I+Q+PS S Sbjct: 67 VSKTYLATIRLGSATPTDDADSEPDLFAEPAALSAVTDDGIAHGVSALRGSIDQVPSAVS 126 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITV--YELLFIRH---EGN-ELELEIHCSKGTYIR 181 A+K G++ Y R G +V +AR + + + +L R+ +G+ ++++E+ CS GTY+R Sbjct: 127 AIKVNGQRSYARVRAGEDVVLKARRVEISDFTILATRYSVAQGHIDVDVEVDCSSGTYVR 186 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTL 216 + DLG LG H+ LRR V + ++ V + Sbjct: 187 ALARDLGGSLGVYGHLTALRRTRVGAFSLDEAVMI 221 >UniRef50_Q30WI7 tRNA pseudouridine synthase B n=4 Tax=Desulfovibrionaceae RepID=TRUB_DESDG Length = 309 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/260 (33%), Positives = 138/260 (53%), Gaps = 14/260 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVL+L+KP+G +S + ++KR+ + GH G LDP+A G+L + LG+ TK S YL++ Sbjct: 10 HGVLVLNKPKGPTSAHCIARIKRL-GQKKIGHAGTLDPMAQGVLLVLLGQCTKISGYLME 68 Query: 72 S-DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ-LAAALDTFRGDIEQIPSMYSAL 129 +K Y LG+ TDT D +G+ + T E+ + A+D + G EQ YSA Sbjct: 69 GGEKIYSGTLELGRTTDTWDDEGETLSTADWTHVTEEDVVRAVDLWTGSSEQQVPAYSAA 128 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K++G+ LY+ AR+G E P + R I + + + E + +HCS GTYIR++ LG Sbjct: 129 KHKGQPLYKLAREGKETPVKTRRIEISQAETLAVELPFVRFRVHCSSGTYIRSLAHSLGN 188 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LGCGA + L R + ++ L+ + L E AE L ++P+D Sbjct: 189 RLGCGAVLTELIREYSHPFSLDEAHDLDDV--LAEPAE---------LAGRVIPLDKALP 237 Query: 250 DYPVVNLPLTSSVYFKNGNP 269 +P + L KNG P Sbjct: 238 HWPKLRLSAADEARVKNGMP 257 >UniRef50_Q72ER4 tRNA pseudouridine synthase B n=10 Tax=Desulfovibrionales RepID=TRUB_DESVH Length = 304 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/262 (33%), Positives = 136/262 (51%), Gaps = 16/262 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL- 70 +G+L+LDKP G SS + KVKR+ + GH G LDP+A G+L + LG ATK S +L+ Sbjct: 6 HGLLVLDKPSGPSSAQCISKVKRL-GQKKIGHAGTLDPMAGGVLLVLLGHATKISGHLMA 64 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ-LAAALDTFRGDIEQIPSMYSAL 129 D +K Y RLG+ TDT DA+G + P E + A +D++ G EQ YSA Sbjct: 65 DGEKVYAGTLRLGETTDTWDAEGTVTATAPWHHVTEADVRAIVDSWLGSSEQEVPPYSAA 124 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K+QG+ LY+ +R G E P + + + + + + + + CS GTYIR++ LG Sbjct: 125 KHQGQPLYKLSRAGRETPVKTKTVEISLAEVVWCDLPHVRFRVRCSSGTYIRSLAHSLGI 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEH-LRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +LGCGA + L R + ++ TL+ L E AE+ ++P+ Sbjct: 185 RLGCGAVLTELTREYSHPFGLDMAHTLDAVLAEPGRLAER------------VIPITHAL 232 Query: 249 SDYPVVNLPLTSSVYFKNGNPV 270 +P V + L +NG P+ Sbjct: 233 PHWPKVGISLQQEASVRNGIPL 254 >UniRef50_Q2SSF2 tRNA pseudouridine synthase B n=4 Tax=Mollicutes RepID=TRUB_MYCCT Length = 292 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 129/232 (55%), Gaps = 9/232 (3%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+ +L+KP+ +S+ + +VK+ N + GH G LD LATG++ + ATK S YLL++ Sbjct: 5 GIFILNKPKNISTYQLINQVKKKLNIKKVGHCGTLDLLATGVVICLVNNATKISDYLLNA 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRG-DIEQIPSMYSALK 130 +K Y+V +L TD+ D +G I++ + P S +Q+ + + EQ P +YS++K Sbjct: 65 NKAYQVKIKLFTLTDSYDGEGNIIQTQIPFDISLDQINKVISKYNNYSYEQYPPIYSSIK 124 Query: 131 YQGKKLYEYARQGIEVPREARPITVY--ELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 GKKLY+YA +V ++R +T++ +LL + E+ L++ CSKGTYIR++ D+ Sbjct: 125 VNGKKLYQYALANQDVEIKSRKVTIFKTKLLNYDQKNYEIFLDVKCSKGTYIRSLAIDIC 184 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMV-----TLEHLRELVEQAEQQDIPAAE 235 + L +V+ L R + + + + +HL + + + D + Sbjct: 185 KDLNTIGYVVELNRTLSGNFDINSAIDIKDLSWKHLTSIYDAVKINDFKVVK 236 >UniRef50_A6C3H8 tRNA pseudouridine synthase B n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C3H8_9PLAN Length = 310 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 121/218 (55%), Gaps = 7/218 (3%) Query: 5 RRRGRD--INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 ++ G D I+G+L ++KPQ ++S + +V+++ R GH G LDPLATG+L +C G Sbjct: 4 KKSGADLKISGLLNINKPQDITSRQVVDQVQKLIKPARVGHAGTLDPLATGVLVLCTGSN 63 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE---RPVTFSAEQLAAALDTFRGDI 119 T+ + + K Y LG+R+DT D G+I E R VT +L L F G I Sbjct: 64 TRLIRLVQQQPKEYIGEFLLGKRSDTDDITGEISETADCRQVTLP--ELETCLPAFEGRI 121 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +QIP YSA+ G++ Y+ AR+G + R + VYE+ + +L I C GTY Sbjct: 122 QQIPPQYSAVHINGRRAYDLARRGKSFEIQPREVDVYEIELLDFSFPRFQLRIVCGSGTY 181 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLE 217 IR+I DLGE+LG GA + L R + + ++ + L+ Sbjct: 182 IRSIGRDLGEQLGVGATMSALTRTRIGPFTLDSAMELD 219 >UniRef50_D2R9Q7 tRNA pseudouridine synthase B n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9Q7_GARVA Length = 367 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/286 (31%), Positives = 145/286 (50%), Gaps = 41/286 (14%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+LL+DKPQG++S+D + + + + R GH G LDP+ATG+L I G AT+ Y+L Sbjct: 6 SGLLLVDKPQGVTSHDIVACARHLLHTKRVGHAGTLDPMATGLLIIGFGNATRLLNYMLG 65 Query: 72 SDKRYRVIARLGQRTDTSDADGQI-------------VEERPVTF----SAEQLAAAL-D 113 +K Y + RLG+ T T DA+G+I V + ++F S E++ + + Sbjct: 66 HNKTYEAVIRLGEATTTDDAEGEILPDDALNIGPGVHVANKDMSFEKSLSFERIKQVVSE 125 Query: 114 TFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELL-----FIRHEGNEL 168 G I Q P+ +SA+K G++ Y+ AR+G V R I V + R +L Sbjct: 126 NLVGKIMQAPTAFSAIKINGQRAYDLAREGKSVEIAPREIFVSDFSVSNPRITRGVSGKL 185 Query: 169 ELEI----HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV--ERMVTL-EHLRE 221 +I CS GTYIR + DLG LG G H+ LRR +V + V R++ L +RE Sbjct: 186 VCDISAKVSCSSGTYIRALARDLGRLLGVGGHLTQLRRTSVGDFSVTDSRVLKLRSQMRE 245 Query: 222 LVE-----QAEQQDIPAAELLDPLLMP------MDSPASDYPVVNL 256 + Q + +P+ + ++P MD+ + P +++ Sbjct: 246 FTDRNGVLQHRSKAVPSDDFDANNMLPKICLNMMDAASHSLPTLSI 291 >UniRef50_C5NXZ4 tRNA pseudouridine synthase B n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXZ4_9BACL Length = 307 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/304 (31%), Positives = 157/304 (51%), Gaps = 29/304 (9%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + K +G++S+D + KV++I + GH+G LDP G+L + LG ATK S Y +D Sbjct: 4 GILPIYKERGVTSHDVVFKVRKILQMKKIGHSGTLDPEVDGVLLLLLGGATKVSDYAMDL 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR LG +T T D G+IV++ V+ + ++L L + G+IEQ P +YSA+K Sbjct: 64 GKSYRAEVCLGLKTTTEDLTGEIVDDCKVSNINIDELKEILSSMIGEIEQTPPIYSAIKV 123 Query: 132 QGKKLYEYARQG---IEVPREARPITVYELLFIRHEGNE--------LELEIHCSKGTYI 180 G+KLYEYAR+G +E+P R + +Y++ FI E +E ++I C KGTY+ Sbjct: 124 NGRKLYEYARRGQFDVEIP--TRKVNIYDITFI--ENSEYYKDDRFYFSIDISCGKGTYV 179 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RTI +GEKL + + L R + +E + L + + V+ L+ Sbjct: 180 RTIATSIGEKLNLPSTMSKLTRTRSGEITLENCLKLSEVEQKVQDGS---------LEQS 230 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP----LEGLVRVTEGENGKFIGMGE 296 L+ + ++ V +P + NG R + P +G+V E E + + Sbjct: 231 LLRKEYALEEFQFVEIPKFRAKQVMNGLRFRKNQFPDYDFTDGIVFTYENEAIAIYHLKD 290 Query: 297 IDDE 300 +DE Sbjct: 291 KEDE 294 >UniRef50_B2KCA4 tRNA pseudouridine synthase B n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCA4_ELUMP Length = 235 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 113/217 (52%), Gaps = 2/217 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQYL 69 I+G+LL+DKP SS+D + +R + GH G LDP+ATG+L + + ATK Sbjct: 9 ISGILLVDKPSDWSSHDIINVARRSMGIRKIGHAGTLDPMATGLLILLVSRTATKLQNKF 68 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSA 128 L K Y IA LG TDT DA G I V F + G E I +YSA Sbjct: 69 LKLSKTYEGIAELGSETDTWDAYGGITNTCEVPEFDLPTIHKHAKKLTGSFEHIVPLYSA 128 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 K G+ ++ Y R+G V ITV+E I + ++ ++ S GTY+R++ LG Sbjct: 129 KKVNGRPMHRYMREGRIVEERKALITVHEWEEISYSKPNIKFTVNVSSGTYVRSLAYMLG 188 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 +LGCG H+ LRR V + ++ +T+E LR L ++ Sbjct: 189 RELGCGGHLTRLRRTRVGDFDIKNAITVEELRSLPQE 225 >UniRef50_C9LRE6 tRNA pseudouridine synthase B n=1 Tax=Dialister invisus DSM 15470 RepID=C9LRE6_9FIRM Length = 283 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 111/209 (53%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVL + KP GM+S D + ++RIY + GH G LDP+A G+LP+ LG + + +Y Sbjct: 1 MDGVLNVLKPAGMTSFDVIACLRRIYGQKKIGHGGTLDPMAAGVLPVFLGRSARLIEYAP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y +G TDT D G+I++ V F G IEQIPS YSA+ Sbjct: 61 IHRKTYEAEFVMGLATDTEDMTGRIIKTGKVCSDISLWERVASKFTGIIEQIPSSYSAIM 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GK+ Y+ AR G +V +R + VY L + + L + CS GTY+R + DLG K Sbjct: 121 VDGKRAYQLARNGKQVILPSRKVEVYHLQIREIQSPYIRLSVTCSAGTYVRALGRDLGNK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 +G + +L R + + + + TLE + Sbjct: 181 MGVPLAMSFLLRTKMGVFSIGQAKTLEEI 209 >UniRef50_Q319E0 tRNA pseudouridine synthase B n=8 Tax=Prochlorococcus marinus RepID=TRUB_PROM9 Length = 307 Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 132/234 (56%), Gaps = 6/234 (2%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G L+++K +G +S+D +++++++ N + GHTG LDP G LPI +G AT+F QY L Sbjct: 5 DGFLVINKDKGCTSHDCVKQIRKLLNTRKVGHTGTLDPEVIGTLPIAIGSATRFIQY-LP 63 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y +LG RT+T D G+I+ ++ S E+L L+ FRG I+QIP S++ Sbjct: 64 QGKTYIGQIKLGIRTNTDDIHGEIINQKCWPKISDEKLDQYLNKFRGLIKQIPPKVSSVH 123 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLG 188 G++ Y+ + R + + EL+ ++ + +EL+I+CS GTYIR I DLG Sbjct: 124 VNGERAYKKSFNNENFELAPREVKIDELILMKWDQINGIIELKINCSAGTYIRAIARDLG 183 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD--IPAAELLDPL 240 E L ++ L+R++ + + + + +++ ++Q + IP L+ + Sbjct: 184 EILNSEGCLLQLKRISACGFHEKNSIKISDIKKGIDQKNASNFIIPTISALNHI 237 >UniRef50_C8NZL8 tRNA pseudouridine synthase B (TRNA pseudouridine 55 synthase) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZL8_ERYRH Length = 277 Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 80/210 (38%), Positives = 116/210 (55%), Gaps = 2/210 (0%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L ++KPQ M+S D + KV+++ + GH+G LDP+ATG+L + + +ATK YL Sbjct: 1 MDGILCINKPQEMTSFDVVAKVRKLLKV-KVGHSGTLDPMATGVLVLAVNQATKALPYLG 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +DK YR +LG +T T D G + E+ + +S E + + G Q SA Sbjct: 60 LNDKTYRGKCKLGMKTSTGDIWGAVEEQASIPQYSREDVLTCFEKLTGPQTQRVPKVSAK 119 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKK YEY EV + IT+Y L I EG+E+E S GTYIRT+ +D+G Sbjct: 120 KINGKKSYEYVFNDEEVKQLYTDITIYNLELIALEGDEIEFRAFVSNGTYIRTLCEDIGM 179 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 LG + L R V Y +E +TLE L Sbjct: 180 LLGTLGTMSALEREQVGPYTLENALTLEAL 209 >UniRef50_B0BXR2 tRNA pseudouridine synthase B n=16 Tax=Rickettsia RepID=TRUB_RICRO Length = 345 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 127/242 (52%), Gaps = 5/242 (2%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 N L + KP+G+SS + VK+I + GH G LD A G+LP +GEATK + L+D Sbjct: 3 NYWLNIYKPRGISSAQLVSIVKKILGKTKIGHAGTLDVEAEGILPFAVGEATKLIRLLID 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K Y + G +T++ D G+++ + S E+ A F G + QIP +SALK Sbjct: 63 ARKTYIFTVKFGMQTNSGDCAGKVIATKDCVPSQEEAYAVCSKFIGSVTQIPPAFSALKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIH--CSKGTYIRTIIDDLGE 189 G + Y+ AR+ +V + R IT+Y+L + + + CSKGTYIRT+ +DL Sbjct: 123 NGVRAYKLAREEKKVELKPRNITIYDLKCLNFDEKNATATYYTECSKGTYIRTLAEDLAL 182 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA-EQQDIPAAELLDPLLM--PMDS 246 L VI LRR V + E + ++ E+ + A E + I +LD +L+ DS Sbjct: 183 SLQSLGFVIELRRTQVGIFKEENAIRIKSPDEITKNALEAKSIKIEAILDDILVLDATDS 242 Query: 247 PA 248 A Sbjct: 243 QA 244 >UniRef50_B3CTX3 tRNA pseudouridine 55 synthase n=2 Tax=Orientia tsutsugamushi RepID=B3CTX3_ORITI Length = 302 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 73/200 (36%), Positives = 108/200 (54%), Gaps = 2/200 (1%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING + L KP G+SS A+ K+K N ++ GH G LD A G+LPI +GEATK QYL+ Sbjct: 5 INGWINLYKPAGISSAQAVAKIKHWLNLSKVGHAGTLDVEAEGVLPIAIGEATKLVQYLM 64 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 ++ K Y + G +TD+ D G++V+ + ++ + F G+I Q+P YSALK Sbjct: 65 EATKEYHFTMKFGAKTDSGDVSGKVVQVTSNIPTYDECLSVTKKFIGEIVQVPPSYSALK 124 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL--ELEIHCSKGTYIRTIIDDLG 188 G + Y AR G +V R + ++ L ++ L CSKGTYIRT+ D+ Sbjct: 125 INGIRAYNLARSGHKVILSPRKVKIFSLKLESYDSINLTATYSTECSKGTYIRTLSQDIA 184 Query: 189 EKLGCGAHVIYLRRLAVSKY 208 L + V+ L R V + Sbjct: 185 LCLQSLSFVVKLARTRVGCF 204 >UniRef50_Q2NIZ2 tRNA pseudouridine synthase B n=7 Tax=Acholeplasmataceae RepID=TRUB_AYWBP Length = 283 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/306 (28%), Positives = 158/306 (51%), Gaps = 36/306 (11%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG L++KP+ M+S+D + ++K+ ++ ++ GHTG LDPLA+G+L +C+G+ATK + +L Sbjct: 1 MNGFFLVNKPEKMTSHDVVFQIKKKFHFDKVGHTGTLDPLASGLLIVCVGKATKLA-FLF 59 Query: 71 DS-DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RGDIEQIPSMYSA 128 D K Y+ + DT D G++++ + + + + + +F + QIP M+SA Sbjct: 60 DKLSKTYQGTFLFNKHYDTLDVKGKLLDTKNIPLNDFAIQTSFASFHQKKYWQIPPMFSA 119 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYEL----LFIRHEGNELELEIHCSKGTYIRTII 184 +K +G+K+Y ARQ V R + ++ LF ++++ +H SKGTYIR++ Sbjct: 120 VKIKGQKMYRLARQNQVVDIPPREVFIHHFEKKSLFCH---DQVDFLVHVSKGTYIRSLA 176 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 DL +L ++ L+R A+ + ++ T+E+L EL D +L + Sbjct: 177 RDLALQLNTYGALLRLQRTAIGTHLLQNAKTIENL---------------ELNDLILDSI 221 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVR----TSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 + D ++N L V KNG + + P + + N F+ +I DE Sbjct: 222 FFASYDELILNDYLIKLV--KNGTYLDQRQIITQKPF-----IVKDSNKNFVAYYDILDE 274 Query: 301 GRVAPR 306 + PR Sbjct: 275 NKYYPR 280 >UniRef50_B4U903 tRNA pseudouridine synthase B n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U903_HYDS0 Length = 283 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 77/206 (37%), Positives = 118/206 (57%), Gaps = 4/206 (1%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + KP G+SS+ + + + N +AGHTG LD A G++ I LG+ATK++QY Sbjct: 1 MDGFYIGYKPVGISSSKFVLDISKSLNT-KAGHTGTLDLEAEGIMIIALGQATKYTQYFN 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG +TDT D G ++++ V + E+L + ++ F+G I QIP +YSA Sbjct: 60 VLPKIYETKGMLGIKTDTQDISGNVIQKIEDVNITCEELKSTIEKFKGKITQIPPIYSAK 119 Query: 130 KYQGKKLYEYARQGIEVPREARPIT--VYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 K GKK Y+ AR+ E +PIT VY + + E + S GTYIRT+I+D+ Sbjct: 120 KINGKKAYKLARKNQVQSIELKPITVNVYSIELLECNIPEFYTKAVVSTGTYIRTLINDI 179 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERM 213 G+ L GA + ++R AV K+ E + Sbjct: 180 GDTLKVGATTLIIKRTAVGKFGNESV 205 >UniRef50_D2R7P9 tRNA pseudouridine synthase B n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7P9_9PLAN Length = 301 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 121/229 (52%), Gaps = 12/229 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L+++KP G +S D + +V+R + GH G LDPLATG+L I +G T+ +Y+ Sbjct: 1 MDGILIVNKPAGPTSRDVVNRVQRCVKPAKVGHAGTLDPLATGVLVIGIGAGTRLVEYVQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIV--EERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y RLG +DT D G + +E PV S + L L F G I Q P YSA Sbjct: 61 QMPKTYVGQFRLGISSDTEDITGCCITHDESPV-VSRDDLRRVLPRFLGKISQKPPAYSA 119 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK +G++ Y+ AR+G V R I + L R + + EL I C GTY+R++ D+ Sbjct: 120 LKVEGERAYDLARRGETVELAPREIVIRRLELTRFDYPDFELVIDCESGTYVRSLGRDIA 179 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTL---------EHLRELVEQAEQ 228 L A + L R ++ + +ER +T+ EHL L+ EQ Sbjct: 180 SALETHAVMTDLIRTSIGSFSLERAITMDSISRETITEHLLPLLAATEQ 228 >UniRef50_Q2GEU5 TRNA pseudouridine synthase B n=2 Tax=Neorickettsia RepID=Q2GEU5_NEOSM Length = 235 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 103/193 (53%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 I G L LDK G+SS AL+ +KR + +AG+ G LDP+ATG+L I LG TK Sbjct: 9 SIEGWLSLDKESGISSFGALKLLKRKFGVKKAGYVGTLDPIATGVLVIALGRTTKLIPQF 68 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DS K Y G TDT D++G ++ + S + L +F G+ Q+P +SA+ Sbjct: 69 DDSFKEYEFAIEWGAETDTLDSEGAVLRNGGLIPSTSAILGVLPSFLGEQLQVPPKFSAI 128 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G + Y AR GIE + R + ++ + + H + L++ CSKGTY+R + D+ Sbjct: 129 HVNGHRAYSLARAGIEFNMQPRRVVIHSIECMNHSAGQSTLKVSCSKGTYVRALARDIAR 188 Query: 190 KLGCGAHVIYLRR 202 KL A V +RR Sbjct: 189 KLESLAFVSKIRR 201 >UniRef50_B5YEH8 tRNA pseudouridine synthase B n=2 Tax=Dictyoglomus RepID=B5YEH8_DICT6 Length = 293 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 91/295 (30%), Positives = 141/295 (47%), Gaps = 24/295 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG LL++KP G++S + +++VK++ + GH G LDP A G+L I LG+ + +YLL Sbjct: 1 MNGFLLINKPPGITSFEVVRRVKKLSKEKKVGHMGTLDPRACGLLIIGLGKYVRLEEYLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIV----EERPVTFSAEQLAAALDT-FRGDIEQIPSM 125 K Y V G +DT D + EE+PV + E L L F G+IEQ P Sbjct: 61 KLPKTYIVEVLFGVSSDTYDRESYRFFYDKEEKPV--NTEILEETLKKYFTGEIEQTPPP 118 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVY--ELLFIRHEGNELELEIHCSKGTYIRTI 183 YSA+ +G++ Y AR+ I V R +T+Y E+L N + S GTYIR++ Sbjct: 119 YSAVHIEGERAYNLARKNISVSLPKRKVTIYESEILNFDKTRNTALIRFKVSSGTYIRSL 178 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 + D+GEKL V +L R + V + ++E + + +LL PL Sbjct: 179 VHDIGEKLNTKTLVSFLVRTDIGHLSVNDSIPYNKIKEGITK---------KLLSPL--- 226 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID 298 D+PV NGN + + +E G+FI +G++ Sbjct: 227 ---EVLDFPVYKTSEEEEKKILNGNAIEARLSTIESPYISIINSQGRFIAVGKVS 278 >UniRef50_C8PR21 tRNA pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PR21_9SPIO Length = 372 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 99/356 (27%), Positives = 157/356 (44%), Gaps = 84/356 (23%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 ++ KP G++S +L +VK + GHTG LD A G+L + G+ TK Y+ D D Sbjct: 9 IIPFAKPSGITSFTSLWQVKHALGTKKVGHTGTLDSFADGLLVLLSGKLTKLVPYITDFD 68 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K YRV+ G+ TDT D +G +++E+P+ A+ + +A+ G IEQ+P +YSA+K G Sbjct: 69 KTYRVLFYFGKETDTLDPEGTVIDEKPLPVYAD-VVSAIRQLTGTIEQVPPVYSAVKQAG 127 Query: 134 KKLYEYARQGIEVPREARPITVY-----ELLF-----------------IRHEGNELE-- 169 ++L + R+G V R +T+Y E+ + I +G + + Sbjct: 128 ERLSDRIRRGETVSVPPRTVTIYSIDIEEIFYEEVSAVPADAAGGNKAAIHADGTDRDTV 187 Query: 170 -----------------LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER 212 L + CSKGTYIR+++ D+ + G A+V LRR AV + +E+ Sbjct: 188 GIDPLDAANDKTVTGAVLCVRCSKGTYIRSLVRDIAHRCGSAAYVYALRRTAVGPFTLEQ 247 Query: 213 MVTLEHLREL------VEQAEQQDIPAAELLDPLLMPMDSPASDYPVVN-------LPLT 259 L+ A+ D PA DS A +PV + LPL+ Sbjct: 248 AAGFSALQPFGNAAAHAVDADSTDTPAG--------CADSAAVPHPVTDDAIKQAALPLS 299 Query: 260 SSV-----------------YFKNGNPVR----TSGAPLEGLVRVTEGENGKFIGM 294 ++ F NG P+ TS PL + T G +G+ Sbjct: 300 ETLARAMHFQMAALKEQYYAAFMNGKPISGHWFTSEQPLSDIGTATVFYEGCCVGL 355 >UniRef50_Q3ABA1 tRNA pseudouridine synthase B n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=TRUB_CARHZ Length = 288 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 142/284 (50%), Gaps = 35/284 (12%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + L KP GM+S+D + V++ + GH G LDP A G+LP+ +G+AT+ +YL Sbjct: 1 MDGFINLLKPPGMTSHDVVAYVRKKLKTGKVGHLGTLDPAAAGVLPVAVGQATRLIEYLE 60 Query: 71 D-SDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 + + K Y G T T D +G+I+E++ +F +A + L F G+IEQ P + SA Sbjct: 61 NVAMKEYLAEIVFGITTATWDMEGEILEQKDASFLTAGDIEKVLGHFHGEIEQTPPLASA 120 Query: 129 LKYQGKKLYEYARQG--IEVPREARPITVYELL-FIRHEGN-ELELEIHCSKGTYIRTII 184 +K GK LY Y RQG +E P+ I ELL F+ + + L I CS+GTYIR+I Sbjct: 121 VKVSGKPLYRYQRQGEKVEPPKRKVFIDSIELLEFLADKPQPAVRLYIRCSRGTYIRSIA 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +++G L GA + +L R + ++ L D L+P Sbjct: 181 NEIGNLLKTGATLKFLLRTRSGPFLLDDSNLLHE-------------------DFTLIPP 221 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGEN 288 + D+P +NL + KNG V+ T+GEN Sbjct: 222 EQLFQDFPKINLTREQYLRVKNGGGVKVE----------TKGEN 255 >UniRef50_C3JA73 tRNA pseudouridine synthase B n=6 Tax=Bacteria RepID=C3JA73_9PORP Length = 261 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 11/240 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN------RAGHTGALDPLATGMLPICLGEATK 64 + ++ +DKP +S D + + + + + GHTG LDP ATG+L +C G ATK Sbjct: 23 MGSIIAVDKPLDWTSFDVVNRFRIMVKQTVGLKKIKVGHTGTLDPKATGLLLLCTGRATK 82 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE-QLAAALDTFRGDIEQIP 123 + L+ + K Y + G T + D + P + L AL F G Q+P Sbjct: 83 QIEQLMLNRKEYVATLKFGATTPSFDLEHPEDAHYPYEHITQGMLEEALQEFLGTTLQVP 142 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 ++SA+ GK+ Y+ AR+G + E +PIT++EL + E L + C KGTYIR++ Sbjct: 143 PIFSAVSVGGKRAYDLARKGKDCQLEGKPITIHELEVVSFEPPYATLRVSCGKGTYIRSL 202 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DLGE+L GA++ LRR + VE +TLE L + + AE + E DP++ P Sbjct: 203 ARDLGERLQSGAYLTALRRTQLGNVRVEDSLTLEELPDFLAHAELNE----EGFDPIVPP 258 >UniRef50_A8RBN0 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBN0_9FIRM Length = 276 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 79/212 (37%), Positives = 121/212 (57%), Gaps = 13/212 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVLL+ K M+S+D + +++ I + GH+G LDP ATG+L + +G A K +L Sbjct: 1 MDGVLLIRKEAEMTSHDVVARLRHILKTKKIGHSGTLDPNATGVLLVLIGRACKVLPFLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D+DK Y LG++T D +++ E+ +T L A L TF G +Q+P M S++K Sbjct: 61 DTDKEYIAELELGKQTLGDDIWSEVLAEKEIT-PIIDLQALLHTFLGKQKQLPPMLSSIK 119 Query: 131 YQGKKLYEYAR--QGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 GKKLYEYAR + +EVP R +T YEL + E + + CS GTYIR++ D+ Sbjct: 120 VNGKKLYEYARNKEAVEVP--MRDVTFYELEVLDEES--MRFRVACSSGTYIRSLCRDVA 175 Query: 189 E---KLGCGAHVIYLRRLAVSKYPVERMVTLE 217 + LGC ++ R V ++ + VTLE Sbjct: 176 QASGNLGCMKSLV---RTKVGRFSLADCVTLE 204 >UniRef50_UPI00016A95FF tRNA pseudouridine synthase B n=1 Tax=Burkholderia pseudomallei DM98 RepID=UPI00016A95FF Length = 198 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 112/207 (54%), Gaps = 18/207 (8%) Query: 110 AALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE 169 AAL F G+I Q+P MYSALK GK LYEYAR G V RE R +T+ L + ++ Sbjct: 1 AALARFVGEIVQVPPMYSALKRDGKPLYEYARAGQTVEREGRTVTIRALALVSCALPDVT 60 Query: 170 LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 + CSKGTY+RT+ +D+GE LGCGAH+ LRR V +E VTL+ L A Q Sbjct: 61 FRVTCSKGTYVRTLAEDIGEALGCGAHLTMLRRTGVGPLTLEHAVTLDAL-----DAATQ 115 Query: 230 DIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS------GAPLEGLVRV 283 D D L P+D+ S +P V L + F +G ++ S A G VRV Sbjct: 116 DER-----DARLAPVDALLSTFPCVKLDAALATRFLHGQRLKLSELAARPDAAEGGRVRV 170 Query: 284 TEGENGKFIGMGEIDDEGRVAPRRLVV 310 + ++ + +G+ EG +AP RLVV Sbjct: 171 YDADD-RLLGVARA-SEGVLAPERLVV 195 >UniRef50_Q8CWM3 tRNA pseudouridine synthase B n=6 Tax=Cyanobacteria RepID=TRUB_THEEB Length = 287 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 120/233 (51%), Gaps = 10/233 (4%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L L+KP G +S+D + +++R R GH G LDP+ATG+LPI LG AT+ YL D Sbjct: 3 GFLNLNKPAGCTSHDCINELRRRLRLKRIGHGGTLDPMATGVLPIALGAATRLLPYLSDR 62 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y R G T T D G+I +E+ + + + L F G+IEQ+P YSA++ Sbjct: 63 -KAYIGTVRFGMSTTTDDITGEICQEQGASHLTLAAIQEQLPQFIGEIEQLPPAYSAIQV 121 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---ELELEIHCSKGTYIRTIIDDLG 188 G++LY AR G V R +TVY + + + EL L I C GTYIR + DLG Sbjct: 122 AGQRLYARARAGEVVSVPPRIVTVYRIEVLHWQPGRYPELTLHITCGSGTYIRALARDLG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTL-----EHLRELVEQAEQQDIPAAEL 236 LG G + L+R+ +E +L EHL Q +P EL Sbjct: 182 TALGVGGTLAALQRIESGGLRIEESHSLESIAPEHLPLCSPQEVLSHLPWLEL 234 >UniRef50_Q2NBZ4 TRNA pseudouridine synthase B n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NBZ4_ERYLH Length = 362 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/318 (29%), Positives = 144/318 (45%), Gaps = 71/318 (22%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRI-----YNANRAGHTGALDPLATGMLPICLGEATKFS 66 +G ++LDKP+G+ S A+ VKR Y + GH G LDP A G+LPI LGEATK + Sbjct: 9 HGWIILDKPRGLGSTQAVGAVKRNLREGGYAKTKVGHGGTLDPEAEGVLPIALGEATKLA 68 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMY 126 +LD+ K Y + G+ TDT DA+G+I +AA L+ F G+IEQ+P Y Sbjct: 69 GRMLDASKIYEFTVQFGEETDTLDAEGEITARSDRRPPMAAIAAVLEHFTGEIEQVPPKY 128 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EG---------NELELEIHCS 175 SAL GK+ Y+ AR G EV + R +T+Y++ RH EG +E +L+ Sbjct: 129 SALMVDGKRAYDRARAGEEVELKTRRVTIYDISLSRHPREGGDPANLGDHDESQLDPRLR 188 Query: 176 KGTYIRTIID-----------------------DLGEKLGCGAH---------------- 196 G + + D +L + + AH Sbjct: 189 GGDGVGFLADADLTSTFQTTSGRPDPYDPGAPLELADAITLTAHVSKGTYIRSLARDIAR 248 Query: 197 -------VIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 V YLRR+ + + ++L+ L E+ + A QD LL+P+++ Sbjct: 249 ALGTVGHVTYLRRIKAGPFAEFQAISLDKLNEIGKGAPLQD---------LLLPLEAGLD 299 Query: 250 DYPVVNLPLTSSVYFKNG 267 D P + L S+ + G Sbjct: 300 DIPALTLDSDSAQAVRQG 317 >UniRef50_C6X4Q1 tRNA pseudouridine synthase B n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X4Q1_FLAB3 Length = 233 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 123/206 (59%), Gaps = 8/206 (3%) Query: 14 VLLLDKPQGMSSNDALQKVK----RIYN---ANRAGHTGALDPLATGMLPICLGEATKFS 66 ++LLDKP +S A+ K+K R +N + GH G LDP ATG+L +C G+ TK Sbjct: 11 IILLDKPLDWTSFQAVNKLKYKLKREFNLPKKFKIGHAGTLDPRATGLLIVCTGKFTKII 70 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADG-QIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 + D+ K Y+ ++G +T++ D + +I+ + ++ Q+ L++F G+I+Q P + Sbjct: 71 PGIQDAPKEYQTEIKIGVQTESYDTEKPEILPQDFSHITSAQINEVLESFVGEIDQTPPV 130 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA+K G + Y+ AR+G +V ++R TV+ + + E + + CSKGTYIR++ Sbjct: 131 FSAIKIDGSRAYDLARKGKDVEMKSRKTTVHYISEVEVELPIIRFTVGCSKGTYIRSLAH 190 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVE 211 D+G+ LG GA++ LRR + +Y ++ Sbjct: 191 DIGQDLGVGAYLTNLRRTKIGEYSID 216 >UniRef50_C7M8Y8 tRNA pseudouridine synthase B n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M8Y8_CAPOD Length = 558 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 117/217 (53%), Gaps = 11/217 (5%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVK----RIYNANRA--GHTGALDPLATGMLPICL 59 R GR +LL+DKP SS A+ K+K + Y + GH G LDPLA+G+L IC Sbjct: 8 REGR----ILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIKIGHAGTLDPLASGLLVICT 63 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGD 118 G+ TK + D+ K Y +G T + D + +I P + E + F G+ Sbjct: 64 GKFTKKITEIQDAVKTYTGTITVGATTPSYDKETEINAHYPTDHITPELIEQVRMQFIGE 123 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 + Q P ++SA+K +GK+LYE+AR G E+ R I +Y + +L+ E+ CSKGT Sbjct: 124 LTQTPPVFSAIKKEGKRLYEFARDGKEIEVPQRTIYIYSFNIDASQFPKLQFEVVCSKGT 183 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVT 215 YIR++ +D G+ LG G ++ LRR + + V +T Sbjct: 184 YIRSLANDFGKALGSGGYLSALRRTKIGDFSVNDALT 220 >UniRef50_B6W932 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6W932_9FIRM Length = 147 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 62/139 (44%), Positives = 91/139 (65%), Gaps = 1/139 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+LL+DK G SS + + ++ + GH G LDPLATG+LP+ + +AT+ S +L+D Sbjct: 3 SGILLIDKNTGASSGKIVYQARKKLGIKKIGHAGTLDPLATGLLPLLINKATRVSDFLMD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALD-TFRGDIEQIPSMYSALK 130 K Y +A GQ+TD+ D G+I+E+ TF + L A+D F G+I Q P MYSALK Sbjct: 63 EVKIYETLAFFGQKTDSQDITGEILEKSSKTFELDDLKKAIDENFVGEILQTPPMYSALK 122 Query: 131 YQGKKLYEYARQGIEVPRE 149 ++GKKLYE AR+G + R+ Sbjct: 123 HKGKKLYELAREGKSIERK 141 >UniRef50_D1BAB8 tRNA pseudouridine synthase B n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB8_THEAS Length = 301 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/267 (32%), Positives = 136/267 (50%), Gaps = 21/267 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +G LL+DK +G+ S ++ V+R + + GH G LD A+G+L +G AT+ S ++ Sbjct: 3 SGFLLIDKEEGLRSTACVEAVRRSLGRDFKVGHAGTLDSGASGLLVALVGRATRLSNLVM 62 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR + RLG RTDT D G+I++ PV + A L+ L +F G Q P SA+ Sbjct: 63 SFSKEYRALVRLGIRTDTEDITGRILDRCPVPRWDAGDLSRVLASFLGCRLQRPPAVSAV 122 Query: 130 KYQGKKLYEYARQGIE---VPRE--ARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 G++ +E AR G E VPRE R I V E+L + + + + C KGTY+R+I Sbjct: 123 HVGGRRAHELARSGEEPNIVPREVFVRRIEVGEML----GPDVVSIRVSCGKGTYVRSIA 178 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 DLGE+LG + LRR +V + VE + + + ++ +LL L+ P+ Sbjct: 179 RDLGERLGTWGTIERLRRTSVGPFRVE---------DALPSGQMGELGTRDLLSRLI-PL 228 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVR 271 + P +P NG +R Sbjct: 229 ERLGEFLPGGRVPAELDALCSNGGAIR 255 >UniRef50_D1BM63 tRNA pseudouridine synthase B n=3 Tax=Veillonella RepID=D1BM63_VEIPT Length = 313 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 113/223 (50%), Gaps = 23/223 (10%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L KP G++S+DA+ +RI R GH+G LDP+A G+LP+ LG+AT+ +Y Sbjct: 1 MDGILPFLKPPGITSHDAVAICRRILKEKRIGHSGTLDPMAYGVLPVFLGKATRLIEYTE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIV-----------------------EERPVTFSAEQ 107 D DK Y +LG TDT D+ GQ V V S E+ Sbjct: 61 DFDKTYVAECKLGTFTDTEDSSGQTVLPDTNMVLRDGVVLNQAIQSTEISATMVKPSFEE 120 Query: 108 LAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE 167 L + L F G +Q PS YSA+K G + YEYAR+GI V R I + + I + Sbjct: 121 LVSILKKFAGIQDQRPSKYSAIKVNGIRAYEYARKGIPVELPLRQIHIKNIELIAYGFPF 180 Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV 210 + + C+ GTYIR+++ D+ LG + L R V + + Sbjct: 181 FTVRVTCTGGTYIRSLLRDICIALGIPGTMTSLARTQVGPFDI 223 >UniRef50_UPI0000D546F1 tRNA pseudouridine synthase B n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D546F1 Length = 291 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/197 (37%), Positives = 111/197 (56%), Gaps = 2/197 (1%) Query: 16 LLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKR 75 L++KP+ +S D K+K+ Y + GH+G LDP A G++ I TK Y+ +SDK Sbjct: 9 LVNKPKTWTSQDLCTKIKKTYKFRKVGHSGTLDPNAEGLMLIATNGFTKLFDYIENSDKT 68 Query: 76 YRVIARLGQRTDTSDADGQIVEERPVTFSA--EQLAAALDTFRGDIEQIPSMYSALKYQG 133 Y+V A +G + T D D + + R + S+ +++ + L G Q P ++SA+K +G Sbjct: 69 YKVKALIGYSSPTIDIDSEFNKIRDIDVSSYKKEIESFLVGILGSSTQTPPIFSAIKVKG 128 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGC 193 K+LY+YARQ EV R I V + + G+E+E I SKGTYIR+I+ DLG+ L Sbjct: 129 KRLYKYARQNKEVDIPKRTIHVKDTQLLSTVGSEIEFLITVSKGTYIRSIVYDLGKHLDT 188 Query: 194 GAHVIYLRRLAVSKYPV 210 A V L R V + + Sbjct: 189 EAIVKELVRTKVGNHDI 205 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A1JIX1 tRNA pseudouridine synthase B n=327 Tax=Gammapro... 414 e-114 UniRef50_Q1GXD4 tRNA pseudouridine synthase B n=4 Tax=Betaproteo... 364 2e-99 UniRef50_Q21H63 tRNA pseudouridine synthase B n=5 Tax=Gammaprote... 362 1e-98 UniRef50_Q1LSL0 tRNA pseudouridine synthase B n=1 Tax=Baumannia ... 360 4e-98 UniRef50_C5AH02 TRNA pseudouridine synthase B n=3 Tax=Burkholder... 358 1e-97 UniRef50_B3PI98 tRNA pseudouridine synthase B n=5 Tax=Gammaprote... 354 3e-96 UniRef50_A1WXU9 tRNA pseudouridine synthase B n=4 Tax=Gammaprote... 353 5e-96 UniRef50_A8PNK9 tRNA pseudouridine synthase B n=1 Tax=Rickettsie... 352 8e-96 UniRef50_C1D8X0 TruB n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 352 9e-96 UniRef50_D0L0S4 tRNA pseudouridine synthase B n=1 Tax=Halothioba... 351 1e-95 UniRef50_Q1QSZ2 tRNA pseudouridine synthase B n=3 Tax=Proteobact... 349 7e-95 UniRef50_Q2SML1 tRNA pseudouridine synthase B n=3 Tax=Gammaprote... 349 1e-94 UniRef50_A1KUJ6 tRNA pseudouridine synthase B n=5 Tax=Neisseriac... 347 2e-94 UniRef50_Q8K9H3 tRNA pseudouridine synthase B n=4 Tax=Buchnera a... 346 4e-94 UniRef50_C7GDK4 tRNA pseudouridine 55 synthase n=6 Tax=Clostridi... 346 8e-94 UniRef50_C4ZJR7 tRNA pseudouridine synthase B n=4 Tax=Betaproteo... 344 3e-93 UniRef50_C0GIW2 tRNA pseudouridine synthase B n=1 Tax=Dethiobact... 342 8e-93 UniRef50_A4G7S5 tRNA pseudouridine synthase B (TRNA pseudouridin... 342 1e-92 UniRef50_B1XV87 tRNA pseudouridine synthase B n=2 Tax=Polynucleo... 341 2e-92 UniRef50_Q8RA40 tRNA pseudouridine synthase B n=10 Tax=Thermoana... 341 3e-92 UniRef50_C4ZBF1 tRNA pseudouridine synthase B n=9 Tax=Firmicutes... 338 1e-91 UniRef50_B8FR03 tRNA pseudouridine synthase B n=2 Tax=Desulfitob... 338 2e-91 UniRef50_C6D2E9 tRNA pseudouridine synthase B n=2 Tax=Paenibacil... 337 4e-91 UniRef50_C4Z5P0 tRNA pseudouridine synthase B n=2 Tax=Bacteria R... 336 9e-91 UniRef50_B4RMB1 tRNA pseudouridine synthase B n=20 Tax=Betaprote... 334 2e-90 UniRef50_Q812X9 tRNA pseudouridine synthase B n=128 Tax=Bacilli ... 334 2e-90 UniRef50_Q2BH44 TRNA pseudouridine synthase B n=1 Tax=Neptuniiba... 334 3e-90 UniRef50_D1PLN1 tRNA pseudouridine synthase B n=1 Tax=Subdoligra... 334 3e-90 UniRef50_B8I6F0 tRNA pseudouridine synthase B n=5 Tax=Clostridiu... 334 3e-90 UniRef50_Q0SSD7 tRNA pseudouridine synthase B n=33 Tax=Clostridi... 334 3e-90 UniRef50_Q2Y7W4 tRNA pseudouridine synthase B n=3 Tax=Nitrosomon... 333 4e-90 UniRef50_Q3SWP7 tRNA pseudouridine synthase B n=100 Tax=Alphapro... 333 5e-90 UniRef50_Q89AF6 tRNA pseudouridine synthase B n=1 Tax=Buchnera a... 333 6e-90 UniRef50_Q6F7I5 tRNA pseudouridine synthase B n=20 Tax=Proteobac... 333 6e-90 UniRef50_UPI00016C0EBC tRNA pseudouridine synthase B n=1 Tax=Epu... 332 9e-90 UniRef50_A3WPV5 TRNA pseudouridine 5S synthase n=1 Tax=Idiomarin... 332 1e-89 UniRef50_Q3ZXU5 tRNA pseudouridine synthase B n=5 Tax=Dehalococc... 332 1e-89 UniRef50_A1HSB7 TRNA pseudouridine synthase B n=1 Tax=Thermosinu... 332 1e-89 UniRef50_A8MFB1 tRNA pseudouridine synthase B n=1 Tax=Alkaliphil... 332 1e-89 UniRef50_A8FDD4 tRNA pseudouridine synthase B n=29 Tax=Bacilli R... 331 2e-89 UniRef50_UPI0000E0F5A1 tRNA pseudouridine synthase B n=1 Tax=Gla... 331 2e-89 UniRef50_B9ZLN1 tRNA pseudouridine synthase B n=1 Tax=Thioalkali... 331 2e-89 UniRef50_UPI0000E87C37 tRNA pseudouridine synthase B n=1 Tax=Met... 330 3e-89 UniRef50_Q18BH7 tRNA pseudouridine synthase B n=8 Tax=Clostridia... 330 3e-89 UniRef50_Q31GK3 tRNA pseudouridine synthase B n=1 Tax=Thiomicros... 329 6e-89 UniRef50_A9KNW1 tRNA pseudouridine synthase B n=6 Tax=Clostridia... 329 8e-89 UniRef50_Q1MZS4 TRNA pseudouridine synthase B n=1 Tax=Bermanella... 328 1e-88 UniRef50_Q0AYI5 tRNA pseudouridine synthase B n=1 Tax=Syntrophom... 328 2e-88 UniRef50_D1CFW9 tRNA pseudouridine synthase B n=1 Tax=Thermobacu... 327 3e-88 UniRef50_A5UZQ6 tRNA pseudouridine synthase B n=5 Tax=Chloroflex... 327 4e-88 UniRef50_UPI000178873D tRNA pseudouridine synthase B n=1 Tax=Geo... 326 5e-88 UniRef50_C6MD69 tRNA pseudouridine synthase B n=1 Tax=Nitrosomon... 325 1e-87 UniRef50_C7I1W4 tRNA pseudouridine synthase B n=1 Tax=Thiomonas ... 325 1e-87 UniRef50_A8RZ93 Putative uncharacterized protein n=8 Tax=Clostri... 324 2e-87 UniRef50_D2MK32 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 324 3e-87 UniRef50_C3RL16 tRNA pseudouridine synthase B n=4 Tax=Bacteria R... 324 3e-87 UniRef50_Q5WFU5 tRNA pseudouridine synthase B n=2 Tax=Bacillacea... 323 5e-87 UniRef50_A5EWY7 TRNA pseudouridine synthase B n=1 Tax=Dichelobac... 323 6e-87 UniRef50_A8LL26 tRNA pseudouridine synthase B n=42 Tax=Rhodobact... 323 6e-87 UniRef50_C4GBF3 Putative uncharacterized protein n=1 Tax=Shuttle... 322 1e-86 UniRef50_A7NAR1 tRNA pseudouridine synthase B n=19 Tax=Francisel... 320 3e-86 UniRef50_C0ZF47 tRNA pseudouridine synthase B n=1 Tax=Brevibacil... 320 5e-86 UniRef50_Q5X1C5 tRNA pseudouridine synthase B n=4 Tax=Legionella... 319 7e-86 UniRef50_Q3A4A3 tRNA pseudouridine synthase B n=2 Tax=Desulfurom... 318 1e-85 UniRef50_A7VT62 Putative uncharacterized protein n=2 Tax=Bacteri... 318 1e-85 UniRef50_B9YSP0 tRNA pseudouridine synthase B n=3 Tax=Nostocacea... 317 3e-85 UniRef50_B0PH12 Putative uncharacterized protein n=3 Tax=Clostri... 316 5e-85 UniRef50_C6P7U8 tRNA pseudouridine synthase B n=1 Tax=Thermoanae... 316 6e-85 UniRef50_C8NA97 tRNA pseudouridine synthase B n=1 Tax=Cardiobact... 315 9e-85 UniRef50_C6IW07 tRNA pseudouridine synthase B n=1 Tax=Paenibacil... 315 9e-85 UniRef50_B5YJI4 tRNA pseudouridine synthase B n=1 Tax=Thermodesu... 315 1e-84 UniRef50_Q4L5X4 tRNA pseudouridine synthase B n=68 Tax=Bacilli R... 315 1e-84 UniRef50_C7H6A8 tRNA pseudouridine synthase B n=2 Tax=Faecalibac... 315 1e-84 UniRef50_Q057K1 TRNA pseudouridine 55 synthetase n=1 Tax=Buchner... 315 2e-84 UniRef50_D1VSB0 tRNA pseudouridine synthase B n=1 Tax=Peptoniphi... 314 3e-84 UniRef50_B1YI60 tRNA pseudouridine synthase B n=2 Tax=Exiguobact... 314 3e-84 UniRef50_A5CXX8 tRNA pseudouridine synthase B n=3 Tax=Bacteria R... 314 3e-84 UniRef50_C8P7Y2 tRNA pseudouridine synthase B n=1 Tax=Lactobacil... 314 4e-84 UniRef50_O66922 tRNA pseudouridine synthase B n=2 Tax=Aquificace... 313 4e-84 UniRef50_C0WBC5 tRNA pseudouridine synthase B n=1 Tax=Acidaminoc... 313 5e-84 UniRef50_C2C2D8 tRNA pseudouridine synthase B n=3 Tax=Listeria R... 313 6e-84 UniRef50_A0LE16 tRNA pseudouridine synthase B n=1 Tax=Magnetococ... 312 7e-84 UniRef50_B0NZN2 Putative uncharacterized protein n=1 Tax=Clostri... 312 8e-84 UniRef50_C9KKC7 tRNA pseudouridine synthase B n=3 Tax=Veillonell... 312 1e-83 UniRef50_Q98BI6 tRNA pseudouridine synthase B n=2 Tax=Mesorhizob... 312 1e-83 UniRef50_A8ZZ61 tRNA pseudouridine synthase B n=1 Tax=Desulfococ... 312 2e-83 UniRef50_B8FCY8 tRNA pseudouridine synthase B n=1 Tax=Desulfatib... 311 2e-83 UniRef50_A5D2S3 tRNA pseudouridine synthase B n=3 Tax=Peptococca... 311 2e-83 UniRef50_B8CW75 tRNA pseudouridine 55 synthase n=1 Tax=Halotherm... 310 3e-83 UniRef50_A4J5W9 tRNA pseudouridine synthase B n=1 Tax=Desulfotom... 310 4e-83 UniRef50_Q2RMR8 tRNA pseudouridine synthase B n=11 Tax=Alphaprot... 310 5e-83 UniRef50_Q01SZ5 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 309 8e-83 UniRef50_A1AMM4 tRNA pseudouridine synthase B n=2 Tax=Desulfurom... 309 1e-82 UniRef50_D0LZ86 tRNA pseudouridine synthase B n=1 Tax=Haliangium... 308 1e-82 UniRef50_Q3BRP7 tRNA pseudouridine synthase B n=20 Tax=Xanthomon... 308 2e-82 UniRef50_B2A3A0 tRNA pseudouridine synthase B n=1 Tax=Natranaero... 307 2e-82 UniRef50_A5GF89 tRNA pseudouridine synthase B n=7 Tax=Geobacter ... 307 3e-82 UniRef50_A9IMS8 tRNA pseudouridine synthase B n=3 Tax=Bartonella... 307 4e-82 UniRef50_A6GNL1 tRNA pseudouridine synthase B n=2 Tax=Burkholder... 307 4e-82 UniRef50_UPI0001C373A4 tRNA pseudouridine synthase B n=1 Tax=Rum... 306 8e-82 UniRef50_C0QUQ5 tRNA pseudouridine synthase B n=5 Tax=Aquificale... 305 1e-81 UniRef50_B4WM04 tRNA pseudouridine synthase B, putative n=1 Tax=... 305 1e-81 UniRef50_Q2KXZ0 tRNA pseudouridine synthase B n=2 Tax=Proteobact... 305 2e-81 UniRef50_Q67P83 tRNA pseudouridine synthase B n=3 Tax=Bacteria R... 305 2e-81 UniRef50_C2KV13 tRNA pseudouridine 55 synthase n=6 Tax=Bacteria ... 304 3e-81 UniRef50_D2RKW1 tRNA pseudouridine synthase B n=1 Tax=Acidaminoc... 304 4e-81 UniRef50_Q2RJM2 tRNA pseudouridine synthase B n=1 Tax=Moorella t... 303 5e-81 UniRef50_A5VJE2 tRNA pseudouridine synthase B n=18 Tax=Lactobaci... 303 6e-81 UniRef50_C9R8X3 tRNA pseudouridine synthase B n=1 Tax=Ammonifex ... 303 7e-81 UniRef50_Q1G9Q1 tRNA pseudouridine synthase B n=27 Tax=Lactobaci... 301 2e-80 UniRef50_Q1IPJ6 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 301 2e-80 UniRef50_A8SMZ3 Putative uncharacterized protein n=1 Tax=Parvimo... 301 2e-80 UniRef50_A8VS66 Pseudouridine synthase-like protein n=2 Tax=Baci... 300 4e-80 UniRef50_Q1WUF2 tRNA pseudouridine synthase B n=28 Tax=Firmicute... 300 4e-80 UniRef50_C7RGP3 tRNA pseudouridine synthase B n=4 Tax=Anaerococc... 300 6e-80 UniRef50_UPI00016C5566 TruB n=1 Tax=Gemmata obscuriglobus UQM 22... 299 1e-79 UniRef50_C6LME9 tRNA pseudouridine synthase B n=1 Tax=Bryantella... 299 1e-79 UniRef50_C1F2Z6 tRNA pseudouridine synthase B n=1 Tax=Acidobacte... 298 2e-79 UniRef50_A6C3H8 tRNA pseudouridine synthase B n=1 Tax=Planctomyc... 298 2e-79 UniRef50_A4A2R8 TRNA pseudouridine synthase B (Fragment) n=1 Tax... 298 2e-79 UniRef50_A2RE90 tRNA pseudouridine synthase B n=24 Tax=Streptoco... 298 2e-79 UniRef50_A7H9F6 tRNA pseudouridine synthase B n=4 Tax=Anaeromyxo... 298 2e-79 UniRef50_C4V3N1 tRNA pseudouridine 55 synthase n=1 Tax=Selenomon... 297 3e-79 UniRef50_B3WER2 tRNA pseudouridine synthase B n=9 Tax=Lactobacil... 297 3e-79 UniRef50_B7KGX7 tRNA pseudouridine synthase B n=19 Tax=Cyanobact... 297 4e-79 UniRef50_Q493T5 tRNA pseudouridine synthase B n=2 Tax=Candidatus... 297 4e-79 UniRef50_A5IIS7 tRNA pseudouridine synthase B n=9 Tax=Thermotoga... 296 6e-79 UniRef50_Q02Z55 tRNA pseudouridine synthase B n=21 Tax=Streptoco... 296 7e-79 UniRef50_C5RBC4 Pseudouridylate synthase n=2 Tax=Lactobacillales... 296 8e-79 UniRef50_Q2LWU1 tRNA pseudouridine synthase B n=1 Tax=Syntrophus... 296 8e-79 UniRef50_A1WLI1 tRNA pseudouridine synthase B n=103 Tax=cellular... 295 1e-78 UniRef50_B0THR7 tRNA pseudouridine synthase B n=2 Tax=Heliobacte... 295 1e-78 UniRef50_B9KZ57 tRNA pseudouridine synthase B n=2 Tax=Thermomicr... 295 2e-78 UniRef50_Q4FVL3 tRNA pseudouridine synthase B n=10 Tax=Bacteria ... 295 2e-78 UniRef50_Q5FQM1 tRNA pseudouridine synthase B n=9 Tax=Acetobacte... 294 3e-78 UniRef50_C6HXK4 tRNA pseudouridine synthase B n=1 Tax=Leptospiri... 293 6e-78 UniRef50_C4FYS6 Putative uncharacterized protein n=1 Tax=Abiotro... 292 1e-77 UniRef50_Q0EZ77 TRNA pseudouridine synthase B n=1 Tax=Mariprofun... 292 2e-77 UniRef50_A3VQI2 TRNA pseudouridine synthase B n=2 Tax=Alphaprote... 291 2e-77 UniRef50_B6BVJ8 tRNA pseudouridine synthase B n=1 Tax=beta prote... 291 2e-77 UniRef50_B1CB51 Putative uncharacterized protein n=1 Tax=Anaerof... 291 3e-77 UniRef50_D2R7P9 tRNA pseudouridine synthase B n=1 Tax=Pirellula ... 290 3e-77 UniRef50_Q38W87 tRNA pseudouridine synthase B n=3 Tax=Lactobacil... 290 4e-77 UniRef50_Q8R5X8 tRNA pseudouridine synthase B n=16 Tax=Fusobacte... 290 5e-77 UniRef50_C8WWJ2 tRNA pseudouridine synthase B n=2 Tax=Alicycloba... 290 6e-77 UniRef50_D1N2Y9 tRNA pseudouridine synthase B n=2 Tax=Lentisphae... 289 8e-77 UniRef50_A9BI94 tRNA pseudouridine synthase B n=1 Tax=Petrotoga ... 289 9e-77 UniRef50_Q0C5Z2 tRNA pseudouridine synthase B n=1 Tax=Hyphomonas... 289 9e-77 UniRef50_B9Y7W5 Putative uncharacterized protein n=1 Tax=Holdema... 289 1e-76 UniRef50_Q7MBB8 tRNA pseudouridine synthase B n=3 Tax=Cyanobacte... 289 1e-76 UniRef50_B1ZX46 tRNA pseudouridine synthase B n=3 Tax=Verrucomic... 288 1e-76 UniRef50_A9AV52 tRNA pseudouridine synthase B n=1 Tax=Herpetosip... 287 2e-76 UniRef50_Q9Z5I4 tRNA pseudouridine synthase B n=3 Tax=Mycobacter... 287 3e-76 UniRef50_C0GUB0 tRNA pseudouridine synthase B n=1 Tax=Desulfonat... 287 3e-76 UniRef50_Q8D2X8 tRNA pseudouridine synthase B n=1 Tax=Wiggleswor... 287 4e-76 UniRef50_B3DZL5 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 286 6e-76 UniRef50_C9LRE6 tRNA pseudouridine synthase B n=1 Tax=Dialister ... 286 7e-76 UniRef50_UPI000185BE2E tRNA pseudouridine synthase B n=1 Tax=Cor... 286 7e-76 UniRef50_Q30WI7 tRNA pseudouridine synthase B n=4 Tax=Desulfovib... 285 1e-75 UniRef50_Q5PAY2 tRNA pseudouridine synthase B n=10 Tax=Anaplasma... 285 2e-75 UniRef50_A0LHM2 tRNA pseudouridine synthase B n=1 Tax=Syntrophob... 284 3e-75 UniRef50_A7BD72 Putative uncharacterized protein n=1 Tax=Actinom... 284 3e-75 UniRef50_Q3ABA1 tRNA pseudouridine synthase B n=1 Tax=Carboxydot... 284 4e-75 UniRef50_Q04ED7 tRNA pseudouridine synthase B n=1 Tax=Oenococcus... 283 5e-75 UniRef50_D1BM63 tRNA pseudouridine synthase B n=3 Tax=Veillonell... 282 1e-74 UniRef50_B0S1E2 tRNA pseudouridine 5S synthase n=2 Tax=Finegoldi... 282 2e-74 UniRef50_A6LLV6 tRNA pseudouridine synthase B n=1 Tax=Thermosiph... 281 2e-74 UniRef50_D1AS76 tRNA pseudouridine synthase B n=1 Tax=Anaplasma ... 281 2e-74 UniRef50_C0QHM4 TruB n=1 Tax=Desulfobacterium autotrophicum HRM2... 281 3e-74 UniRef50_B3CM19 tRNA pseudouridine synthase B n=5 Tax=Wolbachia ... 280 4e-74 UniRef50_Q6MD66 tRNA pseudouridine synthase B n=15 Tax=Chlamydia... 280 4e-74 UniRef50_Q2G5F3 tRNA pseudouridine synthase B n=8 Tax=Sphingomon... 280 5e-74 UniRef50_B9XFC5 tRNA pseudouridine synthase B n=1 Tax=bacterium ... 280 6e-74 UniRef50_B5YEH8 tRNA pseudouridine synthase B n=2 Tax=Dictyoglom... 279 9e-74 UniRef50_C7LXY6 tRNA pseudouridine synthase B n=1 Tax=Acidimicro... 278 1e-73 UniRef50_D1IN94 Whole genome shotgun sequence of line PN40024, s... 278 1e-73 UniRef50_C1SPK2 tRNA pseudouridine 55 synthase n=1 Tax=Denitrovi... 278 2e-73 UniRef50_Q2NIZ2 tRNA pseudouridine synthase B n=7 Tax=Acholeplas... 278 2e-73 UniRef50_P59881 tRNA pseudouridine synthase B n=15 Tax=Cyanobact... 278 2e-73 UniRef50_C7MBA9 tRNA pseudouridine synthase B n=1 Tax=Brachybact... 278 2e-73 UniRef50_P59880 tRNA pseudouridine synthase B n=2 Tax=Prochloroc... 278 2e-73 UniRef50_D2R9Q7 tRNA pseudouridine synthase B n=1 Tax=Gardnerell... 277 3e-73 UniRef50_B1MZH0 tRNA pseudouridine synthase B n=3 Tax=Leuconosto... 277 3e-73 UniRef50_D0MI93 tRNA pseudouridine synthase B n=1 Tax=Rhodotherm... 277 3e-73 UniRef50_Q6AJY7 tRNA pseudouridine synthase B n=1 Tax=Desulfotal... 277 5e-73 UniRef50_A4XL67 tRNA pseudouridine synthase B n=1 Tax=Caldicellu... 277 5e-73 UniRef50_B9MR51 tRNA pseudouridine synthase B n=1 Tax=Anaerocell... 276 5e-73 UniRef50_Q6MMS4 tRNA pseudouridine synthase B n=1 Tax=Bdellovibr... 276 6e-73 UniRef50_B6AR13 tRNA pseudouridine synthase B n=2 Tax=Leptospiri... 276 6e-73 UniRef50_Q72ER4 tRNA pseudouridine synthase B n=10 Tax=Desulfovi... 276 8e-73 UniRef50_Q0WVR7 tRNA synthase-like protein n=10 Tax=Magnoliophyt... 276 8e-73 UniRef50_B2UQ50 tRNA pseudouridine synthase B n=3 Tax=Verrucomic... 276 8e-73 UniRef50_C7N8V4 tRNA pseudouridine synthase B n=1 Tax=Leptotrich... 275 1e-72 UniRef50_D2Q8K5 TruB tRNA pseudouridine synthase B n=6 Tax=Bifid... 275 2e-72 UniRef50_B3CTX3 tRNA pseudouridine 55 synthase n=2 Tax=Orientia ... 275 2e-72 UniRef50_C0W0C7 Possible tRNA-pseudouridine synthase I n=1 Tax=A... 275 2e-72 UniRef50_Q2J732 tRNA pseudouridine synthase B n=1 Tax=Frankia sp... 274 3e-72 UniRef50_C5NXZ4 tRNA pseudouridine synthase B n=1 Tax=Gemella ha... 273 5e-72 UniRef50_D1AL32 tRNA pseudouridine synthase B n=1 Tax=Sebaldella... 273 5e-72 UniRef50_Q46JB9 tRNA pseudouridine synthase B n=2 Tax=Prochloroc... 273 7e-72 UniRef50_C1E906 Predicted protein n=5 Tax=Eukaryota RepID=C1E906... 272 1e-71 UniRef50_C1ZEI4 tRNA pseudouridine 55 synthase n=1 Tax=Planctomy... 272 1e-71 UniRef50_B9FM24 Putative uncharacterized protein n=1 Tax=Oryza s... 272 1e-71 UniRef50_B7ICP6 tRNA pseudouridine synthase B n=1 Tax=Thermosiph... 271 2e-71 UniRef50_C9MUE6 tRNA pseudouridine synthase B n=1 Tax=Leptotrich... 271 3e-71 UniRef50_C2BRN4 Possible tRNA-pseudouridine synthase I n=1 Tax=M... 270 3e-71 UniRef50_Q8CWM3 tRNA pseudouridine synthase B n=6 Tax=Cyanobacte... 270 5e-71 UniRef50_Q1NKV8 TRNA pseudouridine synthase B n=3 Tax=Deltaprote... 269 9e-71 UniRef50_D0NZ97 tRNA pseudouridine synthase B, putative n=1 Tax=... 268 2e-70 UniRef50_C4LJ77 tRNA pseudouridine synthase B n=1 Tax=Corynebact... 268 2e-70 UniRef50_C2CXC9 Possible tRNA-pseudouridine synthase I n=1 Tax=G... 268 2e-70 UniRef50_C8WI31 tRNA pseudouridine synthase B n=2 Tax=Coriobacte... 267 3e-70 UniRef50_B0BXR2 tRNA pseudouridine synthase B n=16 Tax=Rickettsi... 267 3e-70 UniRef50_A1R520 tRNA pseudouridine synthase B n=14 Tax=Actinomyc... 267 3e-70 UniRef50_B8DW45 tRNA pseudouridine synthase B n=5 Tax=Bifidobact... 267 4e-70 UniRef50_C7NH20 tRNA pseudouridine 55 synthase n=1 Tax=Kytococcu... 266 9e-70 UniRef50_C3JA73 tRNA pseudouridine synthase B n=6 Tax=Bacteria R... 266 9e-70 UniRef50_A8RBN0 Putative uncharacterized protein n=2 Tax=unclass... 266 9e-70 UniRef50_Q4JV56 tRNA pseudouridine synthase B n=5 Tax=Corynebact... 265 1e-69 UniRef50_B0MTY5 Putative uncharacterized protein n=1 Tax=Alistip... 265 1e-69 UniRef50_B1GZN9 tRNA pseudouridine synthase B n=1 Tax=uncultured... 265 1e-69 UniRef50_UPI000050FC6C tRNA pseudouridine synthase B n=1 Tax=Bre... 265 1e-69 UniRef50_C7R3E1 tRNA pseudouridine synthase B n=1 Tax=Jonesia de... 265 1e-69 UniRef50_A0QIX1 tRNA pseudouridine synthase B n=93 Tax=Actinomyc... 264 2e-69 UniRef50_C8NZL8 tRNA pseudouridine synthase B (TRNA pseudouridin... 264 3e-69 UniRef50_C7M8Y8 tRNA pseudouridine synthase B n=1 Tax=Capnocytop... 264 3e-69 UniRef50_A4S143 Predicted protein n=3 Tax=Mamiellales RepID=A4S1... 263 4e-69 UniRef50_C7MNL5 tRNA pseudouridine 55 synthase n=1 Tax=Cryptobac... 262 1e-68 UniRef50_B2KCA4 tRNA pseudouridine synthase B n=1 Tax=Elusimicro... 262 2e-68 UniRef50_Q2NBZ4 TRNA pseudouridine synthase B n=1 Tax=Erythrobac... 262 2e-68 UniRef50_Q1AW51 tRNA pseudouridine synthase B n=1 Tax=Rubrobacte... 262 2e-68 UniRef50_D1PGN2 tRNA pseudouridine synthase B n=2 Tax=Prevotella... 261 3e-68 UniRef50_A6LEL7 tRNA pseudouridine synthase B n=49 Tax=Bacteroid... 260 4e-68 UniRef50_D0WDY9 tRNA pseudouridine synthase B n=1 Tax=Slackia ex... 260 6e-68 UniRef50_B5ZBG4 tRNA pseudouridine synthase B n=15 Tax=Ureaplasm... 258 1e-67 UniRef50_C2D7B6 Possible tRNA pseudouridine 55 synthase n=1 Tax=... 258 2e-67 UniRef50_C6X4Q1 tRNA pseudouridine synthase B n=1 Tax=Flavobacte... 258 2e-67 UniRef50_D0WR19 tRNA pseudouridine synthase B n=1 Tax=Actinomyce... 257 3e-67 UniRef50_D2NNU2 Pseudouridine synthase n=2 Tax=Rothia mucilagino... 257 3e-67 UniRef50_C7PUC9 tRNA pseudouridine synthase B n=7 Tax=Bacteroide... 257 5e-67 UniRef50_D0RQI7 tRNA pseudouridine synthase B n=1 Tax=alpha prot... 255 1e-66 UniRef50_B6GCN3 Putative uncharacterized protein n=2 Tax=Collins... 255 1e-66 UniRef50_Q14NU4 Putative trna pseudouridine synthase b protein n... 255 2e-66 UniRef50_C6W615 tRNA pseudouridine synthase B n=5 Tax=Sphingobac... 254 2e-66 UniRef50_D1AY31 tRNA pseudouridine synthase B n=1 Tax=Streptobac... 254 3e-66 UniRef50_Q319E0 tRNA pseudouridine synthase B n=8 Tax=Prochloroc... 253 5e-66 UniRef50_A4AHD1 TRNA pseudouridine synthase B n=1 Tax=marine act... 253 6e-66 UniRef50_Q2GEU5 TRNA pseudouridine synthase B n=2 Tax=Neorickett... 252 1e-65 UniRef50_B3DQF2 tRNA pseudouridine synthase B n=6 Tax=Bifidobact... 252 1e-65 UniRef50_C2KR47 Possible tRNA-pseudouridine synthase I n=2 Tax=M... 252 1e-65 Sequences not found previously or not previously below threshold: >UniRef50_A1JIX1 tRNA pseudouridine synthase B n=327 Tax=Gammaproteobacteria RepID=TRUB_YERE8 Length = 329 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 223/312 (71%), Positives = 257/312 (82%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M RPRRRGRDINGVLLLDKP G+SSND LQKVKR+++ANRAGHTGALDPLATGMLPICLG Sbjct: 1 MGRPRRRGRDINGVLLLDKPLGLSSNDVLQKVKRLFSANRAGHTGALDPLATGMLPICLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKFSQ+LLDSDKRYRV+ARLGQRTDTSDA+G ++ ER V + Q+ AALD+FRG + Sbjct: 61 EATKFSQFLLDSDKRYRVVARLGQRTDTSDAEGALISEREVNVTQAQMDAALDSFRGSSQ 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+PSMYSALK+QGK LYEYARQGIEV REAR ITVYELLFIR EGN+LELEIHCSKGTYI Sbjct: 121 QVPSMYSALKHQGKPLYEYARQGIEVEREARSITVYELLFIRWEGNDLELEIHCSKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RTIIDDLGE LGCGAHV YLRRL V+ YP +RMVTLE L +VE A+ ++ LD L Sbjct: 181 RTIIDDLGELLGCGAHVSYLRRLQVATYPSDRMVTLEQLTAIVETAQAEERSPNAELDAL 240 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 L+PMDS ++P VNL + Y K G PV +G P EG+VR+TEGE FIG+G I ++ Sbjct: 241 LLPMDSAVLNFPEVNLLPAVAAYVKQGQPVHVAGTPGEGMVRITEGEERNFIGIGTIAED 300 Query: 301 GRVAPRRLVVEY 312 GRVAP+RLVVE+ Sbjct: 301 GRVAPKRLVVEH 312 >UniRef50_Q1GXD4 tRNA pseudouridine synthase B n=4 Tax=Betaproteobacteria RepID=TRUB_METFK Length = 302 Score = 364 bits (935), Expect = 2e-99, Method: Composition-based stats. Identities = 147/305 (48%), Positives = 206/305 (67%), Gaps = 11/305 (3%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R R+I+GVLLLDKP G+SSN ALQ VKR+Y A +AGHTG+LDPLA+G+LPICLGEATK Sbjct: 4 KRVKRNIDGVLLLDKPLGISSNQALQMVKRLYQAAKAGHTGSLDPLASGLLPICLGEATK 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 FS +LLD+DK YR + LG T T D +G+I+ + PVT + +L A L GDI Q+P Sbjct: 64 FSHFLLDADKSYRALVTLGSTTTTGDVEGEIMTQAPVTVTQSELEAILQDMVGDILQVPP 123 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK++GK LY YAR+G+E+PR+ RP+T++ + R +G + E+ + CSKGTYIRT+ Sbjct: 124 MYSALKHEGKALYAYAREGVEIPRKPRPVTIHAIALERFDGKQFEMVVSCSKGTYIRTLA 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G +LGCGAH+ LRRL + + ++ VT+E L ++ + D +L+ + Sbjct: 184 EDIGSRLGCGAHLGGLRRLTTAHFNLKNAVTIEQLDQMSQAER----------DAVLLQV 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 D+ D+P+V L S+ Y G V SG + GL R+ E G F+G+GE G +A Sbjct: 234 DAAIEDFPIVTLDADSAFYLLQGQEVWKSGLSISGLFRLY-SEQGAFLGLGEQTSRGSIA 292 Query: 305 PRRLV 309 PRRL+ Sbjct: 293 PRRLL 297 >UniRef50_Q21H63 tRNA pseudouridine synthase B n=5 Tax=Gammaproteobacteria RepID=TRUB_SACD2 Length = 313 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 144/319 (45%), Positives = 200/319 (62%), Gaps = 15/319 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +R GR I+GV+++DKP G SSN LQ+VKR++ AN+AGHTG+LDPLATG+LP+C G Sbjct: 1 MGNRKRPGRPISGVIVIDKPAGDSSNGVLQRVKRLFFANKAGHTGSLDPLATGVLPVCFG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 +ATKFSQ+LLDSDK Y R G+ TDT+D+DG+++E + + + A+ + GDI Sbjct: 61 DATKFSQFLLDSDKEYVSTFRFGEVTDTADSDGEVLESIDASKLTKADVLKAIKAYIGDI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---ELELEIHCSK 176 +Q+P MYSALK G+ LY+ ARQGIEV RE RP+TVYE + E ++ + CSK Sbjct: 121 DQVPPMYSALKRNGQPLYKLARQGIEVEREPRPVTVYEFELLAFRPGAVAEADVRVFCSK 180 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTYIR++ D+G L G HV LRR + +++ +T+E L + ++ AE+ Sbjct: 181 GTYIRSLASDIGADLELGGHVAKLRRTQAGPFTIDQSITIEELEQ------ERGERLAEV 234 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA----PLEGLVRVTEGENGKFI 292 LD L+P D +D+P + L S+ YF G V S VRV + GKF Sbjct: 235 LDHHLLPTDIAVADFPSLELDDNSAFYFSRGQAVMDSRVYRLGDEGDKVRVFDSS-GKFY 293 Query: 293 GMGEIDDEGRVAPRRLVVE 311 G+ EI DEG VAP+RLV + Sbjct: 294 GVAEITDEGTVAPKRLVSQ 312 >UniRef50_Q1LSL0 tRNA pseudouridine synthase B n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=TRUB_BAUCH Length = 317 Score = 360 bits (924), Expect = 4e-98, Method: Composition-based stats. Identities = 158/304 (51%), Positives = 210/304 (69%), Gaps = 2/304 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +ING++LLDK +G+SSN L KVKR++ +AGHTGALDPLA+GMLPICLGEATKFS+YL Sbjct: 11 NINGIILLDKQEGLSSNYLLHKVKRLFRVQKAGHTGALDPLASGMLPICLGEATKFSKYL 70 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 LD+DKRY V A+LG++T+T DA G I+ RPVT + + ++ F GDI QIP M+S++ Sbjct: 71 LDADKRYIVSAKLGEKTNTYDATGIIINTRPVTINQAMIEHIMEQFYGDIYQIPPMFSSI 130 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 KYQG+ LY+YAR+GI +PR AR + +Y L + + +EL+IHCSKGTYIRTIIDD+GE Sbjct: 131 KYQGRALYKYARKGINIPRSARLVHIYNLQILDWDNTHIELQIHCSKGTYIRTIIDDIGE 190 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LGCGAHV LRRLAV+ Y RM+TLE L+ + A +Q L+ LL+P+DS + Sbjct: 191 LLGCGAHVTMLRRLAVAHYHTARMITLESLQTAITLALRQTPNTLVQLNKLLLPIDSAVA 250 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTE--GENGKFIGMGEIDDEGRVAPRR 307 ++P + L S + G V GLVR+ E GE F G+GEI G + P+R Sbjct: 251 NFPAIKLSKDSVARVRKGQMVAVDQCWQSGLVRMCENKGETTYFFGIGEITQPGVLKPKR 310 Query: 308 LVVE 311 L+ E Sbjct: 311 LLAE 314 >UniRef50_C5AH02 TRNA pseudouridine synthase B n=3 Tax=Burkholderiales RepID=C5AH02_BURGB Length = 318 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 144/315 (45%), Positives = 190/315 (60%), Gaps = 19/315 (6%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 RPR R ++GVLLLDKP G+SSNDAL + KR+Y A +AGHTG LDPLA+G+LP+C GEA Sbjct: 10 RPRVPRRLLDGVLLLDKPVGLSSNDALIRAKRLYLAKKAGHTGTLDPLASGLLPLCFGEA 69 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 TKFSQ LL++DK Y RLG RT T DA+G+ +E R V + A L F G+I Q+ Sbjct: 70 TKFSQDLLEADKTYEATMRLGIRTTTGDAEGEAIETREVRVGCAAVEAVLPRFLGEIVQV 129 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALK GK LYEYAR G V RE R +T++ L + E + + CSKGTY+RT Sbjct: 130 PPMYSALKRDGKPLYEYARAGQTVEREGRNVTIHALELLACELPNVTFRVTCSKGTYVRT 189 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +D+GE LGCGAH++ LRR V +E VTL+ L + D L Sbjct: 190 LAEDIGEALGCGAHLVALRRTGVGALTLEHAVTLDALSDAQAAER----------DGWLQ 239 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG-------LVRVTEGENGKFIGMG 295 P+D+ S +P V L + F++G +R + AP G VRV + G+ +G+ Sbjct: 240 PVDALLSTFPPVRLDAEEAKRFRHGQRLRLASAPETGAHDEAGARVRVYDAA-GQLLGVA 298 Query: 296 EIDDEGRVAPRRLVV 310 + D G +AP RLVV Sbjct: 299 RLLD-GVLAPERLVV 312 >UniRef50_B3PI98 tRNA pseudouridine synthase B n=5 Tax=Gammaproteobacteria RepID=B3PI98_CELJU Length = 319 Score = 354 bits (909), Expect = 3e-96, Method: Composition-based stats. Identities = 156/322 (48%), Positives = 209/322 (64%), Gaps = 18/322 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R+GR ++GVLLL KP GM+SN ALQ+ KR++ A +AGHTG+LDPLATG+LP+C GEATK Sbjct: 3 KRKGRPVDGVLLLHKPAGMTSNQALQRAKRLFFAEKAGHTGSLDPLATGVLPLCFGEATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIP 123 FSQ+LLD+DK YR RLG TDT DADG ++E R + QL +ALD FRG+I Q+P Sbjct: 63 FSQFLLDADKGYRTCIRLGITTDTCDADGDVLETRSAAAITRAQLDSALDAFRGNILQVP 122 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---ELELEIHCSKGTYI 180 MYSALK G+ LY+ ARQG+EV RE R +T++ L + E+EL+I CSKGTYI Sbjct: 123 PMYSALKLNGQPLYKIARQGVEVEREPRAVTIHSLDVLAFRPGEVAEVELDIRCSKGTYI 182 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R+I +DLG LGCGAHV L R + ++ + LE L E+ + LD Sbjct: 183 RSIAEDLGRALGCGAHVKVLHRSLAGSFGEDQCIGLEQLEADYERG------GYDALDAH 236 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG----APLEGLVRVTEGENG----KFI 292 L+ D+P + P V+LP S+ YF+ GNPV + A +VRV E+ +F+ Sbjct: 237 LVSADAPVASLPAVDLPANSAYYFRQGNPVMDTKVYRIARQGDIVRVFCAESAQSPRQFL 296 Query: 293 GMGEIDDEGRVAPRRLVVEYPA 314 G+GEI D+GRVAP+R++ A Sbjct: 297 GLGEITDDGRVAPKRIIANRSA 318 >UniRef50_A1WXU9 tRNA pseudouridine synthase B n=4 Tax=Gammaproteobacteria RepID=TRUB_HALHL Length = 304 Score = 353 bits (906), Expect = 5e-96, Method: Composition-based stats. Identities = 150/313 (47%), Positives = 199/313 (63%), Gaps = 10/313 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M++ RR GR++ GVLL DKP G++SN ALQ+VKR++ A +AGHTG+LDPLATG+LPIC G Sbjct: 1 MAK-RRGGRNVTGVLLFDKPAGVTSNKALQQVKRLFGARKAGHTGSLDPLATGLLPICFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 +ATK S +LLD+DKRY V +LG TDT DA+G + V E + L FRG I Sbjct: 60 DATKVSGFLLDADKRYVVTCKLGVATDTGDAEGTERDRAEVPALDEEAVERGLTGFRGPI 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +Q+P MYSA+K+QG++LY+ ARQG+EV RE R + +Y+L + G+ELEL +HCSKGTY Sbjct: 120 DQLPPMYSAIKHQGQRLYDLARQGVEVEREPRRVEIYDLQLVAVRGDELELSVHCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ +D+ + LG HV LRRL + Y M T E L EQ E LD Sbjct: 180 IRTLAEDIAQALGTVGHVCALRRLGLGPYQDPAMWTEEMLAARAEQGR-------EALDA 232 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+PMDS Y V L + + G PV AP EG +R+ + G F+GMG+ D Sbjct: 233 TLLPMDSALQQYTGVELADDLAYFVVQGQPVFVPKAPSEGWLRLYD-RGGNFLGMGQALD 291 Query: 300 EGRVAPRRLVVEY 312 +GR+ P+RLV Sbjct: 292 DGRIGPKRLVARR 304 >UniRef50_A8PNK9 tRNA pseudouridine synthase B n=1 Tax=Rickettsiella grylli RepID=A8PNK9_9COXI Length = 309 Score = 352 bits (904), Expect = 8e-96, Method: Composition-based stats. Identities = 151/312 (48%), Positives = 213/312 (68%), Gaps = 13/312 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R + R I G+LLLDKP+GM+SN ALQKVK+++ A++ GHTG+LDPLATG+LP+CLG Sbjct: 1 MQALRSKKRAITGILLLDKPKGMTSNQALQKVKQLFLADKIGHTGSLDPLATGLLPLCLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 EATKFSQ+LL++DKRY V ARLG +T+T DA+G++++ P+ +S +L A L FRG I Sbjct: 61 EATKFSQFLLNADKRYVVSARLGIKTNTGDAEGEVIKSCPIADYSLNELEAILSHFRGSI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVY--ELLFIRHEGNELELEIHCSKG 177 Q P M+SALKY+G+ LY+ ARQGI V R R + ++ LL + + L LEI CSKG Sbjct: 121 LQTPPMFSALKYKGQPLYKLARQGIVVERRPRTVKIHCLHLLESNEDKSVLSLEIKCSKG 180 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIRT+I+D+GE LGCGA+V LRRL V+ Y ++MV+L+ L+ L + + Sbjct: 181 TYIRTLIEDIGESLGCGAYVQNLRRLGVANYCADQMVSLDELQALSQNERYEK------- 233 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI 297 L+ +DS S++P+ + ++ Y G + P +GL+R+ EN +FIG+GEI Sbjct: 234 ---LLNLDSLLSEWPIFKVSQAAAYYLYCGRTLLLPNLPKQGLLRLCLKENDRFIGIGEI 290 Query: 298 DDEGRVAPRRLV 309 + GRV PRRL+ Sbjct: 291 LENGRVMPRRLI 302 >UniRef50_C1D8X0 TruB n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8X0_LARHH Length = 315 Score = 352 bits (904), Expect = 9e-96, Method: Composition-based stats. Identities = 137/318 (43%), Positives = 191/318 (60%), Gaps = 20/318 (6%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +PR R ++GVLLLDKP GM+SN ALQ+ + ++ A + GHTG LDPLATG+LP+C GEA Sbjct: 5 KPRIERRPLDGVLLLDKPCGMTSNTALQRARWMFRAQKGGHTGVLDPLATGLLPLCFGEA 64 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 TKFS +LLD+DK YR R G + T D +G+I P F EQL A + F G I+Q+ Sbjct: 65 TKFSAFLLDADKGYRATLRFGAVSSTLDREGEITPVAPPAFDREQLDAVIRDFTGVIDQV 124 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALK+QGK LYEYAR G+E+ R+ R +T++ + + +G +++ CSKGTYIRT Sbjct: 125 PPMYSALKFQGKALYEYARAGVEIERKVRQVTIHRIDLLAFDGETAVMDVACSKGTYIRT 184 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+GE+LGCGA++ LRR + + +E+ VTLE L L E D LL+ Sbjct: 185 LAADIGERLGCGAYLTDLRRTTTAGFRLEQTVTLEQLEALDESGR----------DGLLL 234 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPV---------RTSGAPLEGLVRVTEGENGKFIG 293 P D S P V + +G P R A +R+ E+G+F G Sbjct: 235 PADILVSHLPKVVVDEADFQRMTHGQPAAVDPEKAVQRDEKAATISRLRLY-AEDGRFFG 293 Query: 294 MGEIDDEGRVAPRRLVVE 311 +GEI +GR+ P R++ + Sbjct: 294 LGEIRADGRLWPDRMLAK 311 >UniRef50_D0L0S4 tRNA pseudouridine synthase B n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0S4_HALNC Length = 318 Score = 351 bits (902), Expect = 1e-95, Method: Composition-based stats. Identities = 158/324 (48%), Positives = 207/324 (63%), Gaps = 22/324 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSR RRRGR+ING+LLLDKP G+SSN ALQ+VK ++ A +AGHTG+LDP ATGMLP+C G Sbjct: 1 MSR-RRRGREINGILLLDKPIGLSSNQALQRVKHLFQAAKAGHTGSLDPEATGMLPLCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 AT+ S LLD+DK YRV RLG RT+T D +G ++EERPV +AEQ+ L FRG + Sbjct: 60 HATRVSGLLLDADKTYRVTGRLGLRTETGDMEGAVIEERPVPELTAEQIETYLAPFRGLV 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +Q+P MYSALK GK+LYE AR G V R+AR I Y + + +G + +L +H SKG Y Sbjct: 120 DQVPPMYSALKVNGKRLYELARAGEVVERKARSINFYRIELLNFDGQDFDLLVHSSKGAY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE-------------RMVTLEHLRELVEQA 226 IRT+I+D+GE +GCGA V LRR+ V + E M TL+ L +L E Sbjct: 180 IRTLIEDIGEAVGCGAVVAKLRRIGVGPWLTEWPEAAGDVPAKSATMWTLDELIKLNESD 239 Query: 227 EQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEG 286 + I A ++P DS YPVV L S+ + ++G+PV AP G + G Sbjct: 240 AEMAIKHA------ILPTDSALERYPVVQLDADSAFHIRHGHPVFVPKAPQTGWFCIY-G 292 Query: 287 ENGKFIGMGEIDDEGRVAPRRLVV 310 + F+GMGE+ D+GRVAPRRL Sbjct: 293 PDDLFLGMGEVLDDGRVAPRRLFA 316 >UniRef50_Q1QSZ2 tRNA pseudouridine synthase B n=3 Tax=Proteobacteria RepID=TRUB_CHRSD Length = 307 Score = 349 bits (896), Expect = 7e-95, Method: Composition-based stats. Identities = 142/312 (45%), Positives = 198/312 (63%), Gaps = 16/312 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RRRG I+GVLLLDK G+SSN ALQ+V+R+Y+A +AGHTG LDP+ATG+LP+C G Sbjct: 1 MAR-RRRGTPIDGVLLLDKAPGVSSNRALQQVRRLYDAQKAGHTGTLDPMATGLLPVCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE-QLAAALDTFRGDI 119 EATKFS YLLD+DK YR RLG+ TDT DA+G ++E V E + AAL FRG++ Sbjct: 60 EATKFSAYLLDADKTYRTWVRLGEVTDTGDAEGTVIEHHSVPALDERDIEAALAGFRGEV 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 EQ+P MYSALK+QG+ LYE AR+G V R AR +TVY++ + E ELE+ CSKGTY Sbjct: 120 EQVPPMYSALKHQGRPLYELAREGKHVERAARRVTVYDMRLLSCEAEGFELEVRCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ +D+G LGCGAH+ LRRL + + M L +L + + Sbjct: 180 IRTLAEDIGHALGCGAHITSLRRLRSGPFEADAMHAFSALEDLDAASR----------EA 229 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNP--VRTSGAPLEGLVRVTEGENGKFIGMGEI 297 L+P+D+ + P + + ++S +G + T+G + R+ + F+G+ + Sbjct: 230 RLLPVDTMLTHLPSLEVAASASRRLLHGQRAQIDTAGLAAQSTARLY--RDAAFLGLVTV 287 Query: 298 DDEGRVAPRRLV 309 + G VAPRRL+ Sbjct: 288 TECGEVAPRRLL 299 >UniRef50_Q2SML1 tRNA pseudouridine synthase B n=3 Tax=Gammaproteobacteria RepID=TRUB_HAHCH Length = 311 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 147/310 (47%), Positives = 193/310 (62%), Gaps = 8/310 (2%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R R++G +NGV+++DKPQ +SN LQKVK NA +AGHTGALDPLATG+LP+C G Sbjct: 1 MAR-RKKGAPLNGVMVVDKPQDWTSNAVLQKVKYALNAQKAGHTGALDPLATGVLPLCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFSQ LLDSDK Y A LG+ T TSDADG I+ E PV S L + L FRG++ Sbjct: 60 EATKFSQLLLDSDKEYVTCAYLGRTTTTSDADGDIIAESPVPGLSVSDLESVLGKFRGNL 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +QIPSMYSALK++G LY+ ARQGIEV REAR I ++EL + + L L + CSKGTY Sbjct: 120 KQIPSMYSALKHKGTPLYKLARQGIEVEREARDIIIHELELLDYTPPFLRLRVLCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR +++D+G+ LGCGAHV+ LRR + + V + E AAE Sbjct: 180 IRNLVEDIGQVLGCGAHVMELRRTRCGPFSLADSVEFVSFAD-----ESGRQAAAEKYKE 234 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+P+DS + + L ++ G V+ S EG VR+ FIG+GE+ Sbjct: 235 RLLPIDSSVQQFSEIILDEANTGSIIQGQTVKISPLSSEGKVRLYTNRR-HFIGLGEVMS 293 Query: 300 EGRVAPRRLV 309 +G V P RL+ Sbjct: 294 DGTVKPVRLL 303 >UniRef50_A1KUJ6 tRNA pseudouridine synthase B n=5 Tax=Neisseriaceae RepID=A1KUJ6_NEIMF Length = 319 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 184/310 (59%), Gaps = 13/310 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+ + + R +NGVLLLDKP+G+SSN ALQK +R+++A +AGHTG LDPLATG+LP+C G Sbjct: 10 MNTGKPQKRAVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFG 69 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKF+QYLLD+DK Y +LG+ + T DA+G+I+ S + A G+I Sbjct: 70 EATKFAQYLLDADKAYTATLKLGEASSTGDAEGEIIATARADISLAEFQTACQALTGNIR 129 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+P M+SALK++GK LYEYAR+GI + R+ R ITVY + + + + + CSKGTYI Sbjct: 130 QVPPMFSALKHEGKPLYEYARKGIVIERKPRDITVYAIDIAEFDAPKAVISVRCSKGTYI 189 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT+ +D+ + +G AH+ LRR + + + + TLE L L E D L Sbjct: 190 RTLSEDIAKHIGTFAHLTALRRTETAGFTIAQSHTLEALANLNETER----------DSL 239 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+P D + +P L + + G R P + VRV ENG+F+G+ E Sbjct: 240 LLPCDVLVAHFPQTVLNDYAVHMLQCGQRPRFEEDLPSDTPVRVYT-ENGRFVGLAEYQK 298 Query: 300 E-GRVAPRRL 308 E R+ RL Sbjct: 299 EICRLKALRL 308 >UniRef50_Q8K9H3 tRNA pseudouridine synthase B n=4 Tax=Buchnera aphidicola RepID=TRUB_BUCAP Length = 312 Score = 346 bits (889), Expect = 4e-94, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 206/303 (67%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 + R++NG LLLDKP+GM+SN+ LQKVK I+ A +AG+ G LDPLATG+LPIC GEATKFS Sbjct: 5 KKRNVNGFLLLDKPKGMTSNNVLQKVKIIFKAKKAGYIGTLDPLATGILPICFGEATKFS 64 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMY 126 YL SDK Y VIARLG++T TSD+DG IV +RP+ F+ QL+ AL G + QIPSMY Sbjct: 65 NYLNASDKHYNVIARLGEKTSTSDSDGIIVRKRPILFTPIQLSLALKALTGSVNQIPSMY 124 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SA+KY+G LY+YARQGI V R R + +Y++ + + N +EL +HCSKGTYIRT+I+D Sbjct: 125 SAVKYKGIPLYKYARQGINVKRNIRCVFIYKIDLVDQKDNWIELNVHCSKGTYIRTLIED 184 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LGEKL CGAHVI LRRL + ++V L L L+ + I + +D LLMP+D+ Sbjct: 185 LGEKLFCGAHVIRLRRLKIGLLSYSKLVKLSFLENLLNEKNVVKINFFKKIDDLLMPVDT 244 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 P P + + + F+ G V S + GLVRV E +N FIG+G+I+ E + P Sbjct: 245 PVYFLPKIYISIEKLSVFRLGQKVNFSSSITNGLVRVFEKDNNTFIGLGKINSEKTLIPY 304 Query: 307 RLV 309 RLV Sbjct: 305 RLV 307 >UniRef50_C7GDK4 tRNA pseudouridine 55 synthase n=6 Tax=Clostridiales RepID=C7GDK4_9FIRM Length = 321 Score = 346 bits (887), Expect = 8e-94, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 173/310 (55%), Gaps = 10/310 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ + K +G +S D + K++ I + GHTG LDP A G+LP+CLG+ATK L Sbjct: 12 INGIINVYKEKGYTSFDVVAKLRGILKTKKIGHTGTLDPDAEGVLPVCLGKATKVCDLLT 71 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D +K Y + LG+ TDT D G ++EE PV + EQ+ A+ +F G+ Q+P MYSALK Sbjct: 72 DKNKEYVAVMLLGKVTDTQDTTGTVLEEHPVEVTEEQVKEAVLSFTGEYMQVPPMYSALK 131 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKL + AR G+ V R+ARP+ +Y + I+ E + + + CSKGTYIRT+ D+GEK Sbjct: 132 VNGKKLCDLARAGVTVERQARPVQLYSIEIIKMELPRVCMRVRCSKGTYIRTLCQDIGEK 191 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA--EQQDIPAAELLDPLLMPMDSPA 248 L CGA + L R VS++ V+ + L + E V++A + Q + + +DS Sbjct: 192 LSCGACMESLLRTKVSEFCVQDALRLSEIEERVQKAAGQTQSEQWNAEMFDFIYAVDSVF 251 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTS------GAPLEGLVRVTEGENGKFIGMGEIDD-EG 301 Y + + NGN ++ + VR+ + E G+FIG+ E + G Sbjct: 252 LQYKKAVICKEWNKLLYNGNRMKKDMFVSYQKDWEQQKVRIYD-EEGRFIGIYEYSEIHG 310 Query: 302 RVAPRRLVVE 311 P +L +E Sbjct: 311 DYKPVKLFME 320 >UniRef50_C4ZJR7 tRNA pseudouridine synthase B n=4 Tax=Betaproteobacteria RepID=C4ZJR7_THASP Length = 328 Score = 344 bits (882), Expect = 3e-93, Method: Composition-based stats. Identities = 141/316 (44%), Positives = 194/316 (61%), Gaps = 20/316 (6%) Query: 3 RPRRRG--------RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGM 54 RP+R+G R+++GVLLLDKPQGMSSN ALQ +R+ A +AGHTG LDP+A+G+ Sbjct: 15 RPKRKGQPQRRIVRREVDGVLLLDKPQGMSSNGALQTARRLLAAAKAGHTGTLDPMASGL 74 Query: 55 LPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDT 114 LP+ GEATKF+Q LLD+DK Y + RLG TD+ DA+G+++ RPV L A L+ Sbjct: 75 LPLTFGEATKFAQMLLDADKTYEAVVRLGVDTDSGDAEGKVLATRPVAVDRAALEAVLER 134 Query: 115 FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHC 174 FRG+IEQ+P MYSALK GK LYEYAR GIE+ R AR + ++ L + G + +HC Sbjct: 135 FRGEIEQVPPMYSALKRDGKALYEYARAGIELERAARRVVIHALELLDFAGERFTIRVHC 194 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKGTYIR++ D+G LGCGAH+ LRR A+ + + +TLE L E Sbjct: 195 SKGTYIRSLAMDIGAALGCGAHLAALRRTAIGAFDLSGALTLEALEAAGEGGR------- 247 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGM 294 D LL P+D+ + +PV+ L ++ G + +GA VR G F+G+ Sbjct: 248 ---DALLAPVDALVAGFPVLQLDAEAARGLLQGRTLALAGAQPGAKVRAYGP--GGFLGL 302 Query: 295 GEIDDEGRVAPRRLVV 310 + D+GR+A RRL+ Sbjct: 303 AQWQDDGRLAARRLIA 318 >UniRef50_C0GIW2 tRNA pseudouridine synthase B n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIW2_9FIRM Length = 294 Score = 342 bits (878), Expect = 8e-93, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 174/302 (57%), Gaps = 14/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + KP GM+S++ + ++R+ + R GHTG LDP A G+LP+CLG+AT+ S+Y+L Sbjct: 1 MNGIINILKPPGMTSHNVVSFLRRLSSMRRIGHTGTLDPGAAGVLPVCLGQATRVSEYVL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK YR LG+ TDT DA G +V E+ V + +++ L +F G QIP MYSA+ Sbjct: 61 HMDKVYRAELTLGKSTDTEDASGTMVAEQAVPVLNKQEITKVLSSFVGQQTQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYE ARQG EV R+AR I VY + ++ + ++ ++ CS+GTY+RT+ ++ E Sbjct: 121 KVGGKKLYELARQGGEVDRKAREIHVYSMKLLQVDKQKITFDVACSRGTYVRTLCREIAE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG H+ +L R V + ++ TLE L L ++ E L +L+ D+ Sbjct: 181 KLGTVGHMSFLLRTGVGPFLLQDSFTLEELSALGQK---------ESLSAVLLSADTALG 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTS--GAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P ++L + NGN + LVR+ E +F+ +G I EGR+ P + Sbjct: 232 HLPAISLSHQQAGRVANGNTISLDTVDLSEGSLVRIY-AEKQQFLAVGRI-KEGRLKPEK 289 Query: 308 LV 309 + Sbjct: 290 VF 291 >UniRef50_A4G7S5 tRNA pseudouridine synthase B (TRNA pseudouridine 55 synthase) (Psi55 synthase) (TRNA-uridine isomerase) (TRNA pseudouridylate synthase) n=5 Tax=Burkholderiales RepID=A4G7S5_HERAR Length = 314 Score = 342 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 184/310 (59%), Gaps = 15/310 (4%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +++ ++GVLLLDK G+SSNDAL K K + NA +AGHTG LDP ATG+LP+C GEATK Sbjct: 7 KKKRVPVHGVLLLDKQAGVSSNDALIKAKWLLNALKAGHTGTLDPFATGLLPLCFGEATK 66 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 F+Q LLD+DK Y + LG T+T D +G ++ V S +Q+ A L FRGDIEQ+P Sbjct: 67 FAQDLLDADKTYETVVHLGVTTNTGDTEGDVIATHAVDISRQQIDAVLAQFRGDIEQVPP 126 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK GK LYEYAR GI + REARP+T++ L F+ + L L + CSKGTYIR + Sbjct: 127 MYSALKRDGKPLYEYARAGITLEREARPVTIHLLEFVDFQAPFLTLRVRCSKGTYIRVLG 186 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G LGCGAH+ LRR+ V + + +T+E L A L + Sbjct: 187 EDIGAALGCGAHLNALRRIQVGDLLIAQAITIEELTAKDADARI----------AALASV 236 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL-----EGLVRVTEGENGKFIGMGEIDD 299 D+ + +P + L + F +G + + +G +R+ +G+ +G G + + Sbjct: 237 DALLTSFPALRLSEELAKRFLHGQRLALGKENIVLPEGQGRMRIYRESDGQLLGTGLMQE 296 Query: 300 EGRVAPRRLV 309 +AP RL+ Sbjct: 297 YSILAPERLI 306 >UniRef50_B1XV87 tRNA pseudouridine synthase B n=2 Tax=Polynucleobacter necessarius RepID=B1XV87_POLNS Length = 303 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 127/307 (41%), Positives = 181/307 (58%), Gaps = 20/307 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+GV+LLDKP GMSS DA+ VK +NA++AGHTG LDP+ATG+LPICLGEATK+SQ LL Sbjct: 5 IDGVVLLDKPAGMSSQDAVTAVKHAFNADKAGHTGTLDPMATGLLPICLGEATKYSQDLL 64 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALD----TFRGDIEQIPS 124 ++DK Y + G RTDT DA+GQI+EE P+ + ++ ALD F G I Q+P Sbjct: 65 EADKTYIAQVKFGARTDTGDAEGQIIEELPLPTFANDAEIKIALDALLPKFAGPISQVPP 124 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK GK LYEYAR G+E+ R R I ++ + + E LE+ CSKGTYIR + Sbjct: 125 MYSALKRDGKPLYEYARAGVELERIPRDIVIHSIRWTNINWPEATLEVSCSKGTYIRVLA 184 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G LGCGAH++ LRR V +E+ +E ++ ++ + ++P+ Sbjct: 185 EDIGNALGCGAHLVGLRRTEVGHLTLEQSFKIESIQNGLQNSA-----------DYILPV 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENG--KFIGMGEIDDEGR 302 D+ P + + + + G V + +E LVR+ FIG + G Sbjct: 234 DALLQTLPHLTVDEQQAKRLEMGQRVPLNLPSIEALVRIYRATAAPHNFIGTADWRS-GV 292 Query: 303 VAPRRLV 309 + P+RL+ Sbjct: 293 LHPKRLI 299 >UniRef50_Q8RA40 tRNA pseudouridine synthase B n=10 Tax=Thermoanaerobacteraceae RepID=TRUB_THETN Length = 285 Score = 341 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 120/302 (39%), Positives = 176/302 (58%), Gaps = 20/302 (6%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++GVL + KP GM+S+D + +++IY + GHTG LDP A G+LP+C+G ATKF+ YL Sbjct: 2 SVDGVLNVLKPPGMTSHDVVDFIRKIYGIKKVGHTGTLDPDAAGVLPVCMGRATKFTSYL 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 ++ DKRYR G TDT D G+IVE PV F+ E+L L F+G+I+QIP +YSA Sbjct: 62 MEHDKRYRFEITFGFSTDTLDKSGKIVESGPVPLFTLEKLQEVLSQFKGEIQQIPPIYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-ELELEIHCSKGTYIRTIIDDL 187 K +GKKLYEYAR+G EV +TVYEL I+++ L L++ CSKGTY+R ++ D+ Sbjct: 122 KKVKGKKLYEYARKGEEVEIPPIKVTVYELELIKYDAPHHLLLDVKCSKGTYVRALVRDI 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 +KL H+ +L R V + +E TLE ++E + P+D Sbjct: 182 CKKLEVPGHMSFLIRTEVGDFDIESSYTLEEIKE---------------GKAEVQPVDKF 226 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 +P V L SS NG +R + LV++ + +G FIG+G + E ++ P+R Sbjct: 227 IK-FPSVELDEVSSNKILNGQFIRNTYNVENSLVKLYDN-HGIFIGIGVAEGE-KIRPKR 283 Query: 308 LV 309 L Sbjct: 284 LF 285 >UniRef50_C4ZBF1 tRNA pseudouridine synthase B n=9 Tax=Firmicutes RepID=C4ZBF1_EUBR3 Length = 299 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 173/309 (55%), Gaps = 19/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + K +G +S D + K++ I++ + GHTG LDP A G+LP+CLG+AT+ L Sbjct: 2 VNGIINVYKEKGYTSFDVVAKLRGIFHQKKIGHTGTLDPDAQGVLPVCLGKATRVCDLLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK Y+ + LGQ TDT D GQ++ + V + + + A+ F G +Q+P MYSALK Sbjct: 62 DKDKVYKAVLLLGQETDTQDISGQVLNQAKVNVTEQAVYDAISQFIGRQKQVPPMYSALK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYE AR+G + R+AR I V+++ + E+ + +HCSKGTYIRT+ +D+GE+ Sbjct: 122 VNGKKLYELAREGKVIERKARDIEVFDIKVESIDLPEVTMTVHCSKGTYIRTLCNDIGER 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC + L R+ V+ + +E +TL ++ V++ ++MP+D + Sbjct: 182 LGCHGCMKSLLRVRVAGFDLEHALTLSQIQSKVDEGCFD----------MVMPVDGVFEN 231 Query: 251 YPVVNLPLTSSVYFKNGNPVRT-------SGAPLEGLVRVTEGENGKFIGMGEIDDE-GR 302 P V+ + +NGN + A + RV E G F+G+ DE G Sbjct: 232 LPAVHTASDADKLVRNGNKIPAVLTDYLKHSADSDIRYRVYNHE-GIFVGVYSYLDETGE 290 Query: 303 VAPRRLVVE 311 P ++ +E Sbjct: 291 FKPVKIFME 299 >UniRef50_B8FR03 tRNA pseudouridine synthase B n=2 Tax=Desulfitobacterium hafniense RepID=B8FR03_DESHD Length = 294 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 171/306 (55%), Gaps = 19/306 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+ + KP GM+S+D + +++RI N + GHTG LDP TG+LPIC+G+AT+ ++Y+ Sbjct: 1 MDGVINVLKPPGMTSSDVVVRLRRILNTRKIGHTGTLDPEVTGVLPICVGKATRLAEYIT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K YR G TDT DA G+I+ + P SAE + + G I QIP M+SA+K Sbjct: 61 NQGKSYRCEMIFGITTDTQDASGEILHKEPAQVSAEDFQRLIPQYLGSIRQIPPMFSAVK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDDL 187 +QGK+LYE ARQG+EV R +R I + L + E + E+ CSKGTYIRT+ D+ Sbjct: 121 HQGKRLYELARQGLEVERTSREIHIDHLQLMEWIAGEYPKAIFEVDCSKGTYIRTLCHDM 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+ LGCGAH+ L RL + ++ ++LE ++ +EQ + L+P Sbjct: 181 GQTLGCGAHMSALIRLRSGPFHIQESLSLETIQNFMEQDDYS----------FLIPYIQV 230 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV----RVTEGENGKFIGMGEIDDEGRV 303 D P V+L ++ F+NG S + + V G F+G+G ++ + Sbjct: 231 L-DLPRVSLSPQRALAFRNGLSTAKSQIEVGAEIGEGCEVQVFSEGNFLGIGIWREQA-L 288 Query: 304 APRRLV 309 P ++ Sbjct: 289 CPYKVF 294 >UniRef50_C6D2E9 tRNA pseudouridine synthase B n=2 Tax=Paenibacillus RepID=C6D2E9_PAESJ Length = 300 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 163/309 (52%), Gaps = 20/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ + KP G +S+D + KV+RI R GH G LDP+ TG+LP+CLG +T+ +YL Sbjct: 1 MDGIIAVWKPAGWTSHDVVAKVRRIVRMKRIGHAGTLDPMVTGVLPLCLGRSTRVVEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y + +LG TDT D G ++EE+ + + EQ+ L +F G+I+Q+P M+SA+ Sbjct: 61 ERPKAYEAVIQLGTATDTEDLTGTVLEEQTGIIVTREQVLQVLQSFVGEIDQVPPMFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELL----FIRHEGNELELEIHCSKGTYIRTIID 185 K GK+LYE AR+G V R++R +T++++ + + + CSKGTYIRT+ Sbjct: 121 KVDGKRLYELAREGKTVERKSRKVTIHQIDLLNVDLDADKPRFAFSVICSKGTYIRTLCV 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G LG A + L R E+ VTLE L EL + L+ ++P D Sbjct: 181 DIGRALGVPAAMAELTRTMSGGITREQCVTLEELEELQAAGK---------LEEKMLPAD 231 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPV----RTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 V + G + + LVR+ GEN FIG+ E DD+ Sbjct: 232 IAIDHLQRVQANAAVTEMALRGQKIPYNRMAASFDSSSLVRLY-GENDAFIGIFEADDQA 290 Query: 302 R-VAPRRLV 309 + P ++ Sbjct: 291 SALKPVKVF 299 >UniRef50_C4Z5P0 tRNA pseudouridine synthase B n=2 Tax=Bacteria RepID=C4Z5P0_EUBE2 Length = 303 Score = 336 bits (861), Expect = 9e-91, Method: Composition-based stats. Identities = 113/311 (36%), Positives = 167/311 (53%), Gaps = 21/311 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVL + K QG +S+D + K++ I + GHTG LDP A G+LP+C+G+ATK + Sbjct: 1 MNGVLNVYKEQGFTSHDVVAKLRGILKTKKIGHTGTLDPDAVGVLPVCIGKATKLCDLIT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K Y + LG TDT D G+IV + V S + + F G+ EQIP MYSALK Sbjct: 61 DWGKTYEAVMLLGTTTDTLDISGKIVAQSEVNVSEVDVLKVCNEFIGEYEQIPPMYSALK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIIDD 186 Y G+KLYE AR+GIE+ R+ R + + L + + + + CSKGTYIR++ DD Sbjct: 121 YNGQKLYELARKGIEIERKPRTVHINTLRVNDINLSDKQKTVTITVDCSKGTYIRSLCDD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G+KLGCGA ++ L R V ++ ++ +TL + LV + E +D + +D Sbjct: 181 IGKKLGCGACMMKLTRTRVGEFMLDDTLTLNQISALVLKGEIED---------RITGIDK 231 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG------LVRVTEGENGKFIGMGEIDDE 300 SDY + S Y NGN + P + RV + + FIG+ E DE Sbjct: 232 IFSDYQEIKFAEEYSRYLHNGNKLSREQIPADAAISDNEKYRVYDS-DKCFIGVYEFRDE 290 Query: 301 GRVAPRRLVVE 311 + P ++ E Sbjct: 291 -VLYPVKIFYE 300 >UniRef50_B4RMB1 tRNA pseudouridine synthase B n=20 Tax=Betaproteobacteria RepID=TRUB_NEIG2 Length = 306 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 124/297 (41%), Positives = 175/297 (58%), Gaps = 12/297 (4%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + R +NGVLLLDKP+G+SSN ALQK +R+++A +AGHTG LDPLATG+LP+C GEA K Sbjct: 4 KPAKRPVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEAAK 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 F+QYLLD+DK Y +LG+ + T DA+G+I+ S + A G+I Q+P Sbjct: 64 FAQYLLDADKAYTATLKLGEASSTGDAEGEIIAAARADISLAEFQTACQALTGNIRQVPP 123 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 M+SALK++GK LYEYAR+GI + R+ R ITVY + + + + + CSKGTYIRT+ Sbjct: 124 MFSALKHEGKPLYEYARKGIVIERKPRDITVYSIDIAEFDAPKAVISVRCSKGTYIRTLS 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 + + + +G AH+ LRR + + + + TLE L L E D LL+P Sbjct: 184 EGIAKHIGTFAHLTALRRTETAGFTIAQSHTLEALANLDETER----------DNLLLPC 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEIDDE 300 D S +P L + + G R P + VRV ENG+F+G+ E E Sbjct: 234 DVLVSHFPQTVLNDYAVHMLQCGQRPRFEEDLPSDTPVRVYT-ENGRFVGLAEYQKE 289 >UniRef50_Q812X9 tRNA pseudouridine synthase B n=128 Tax=Bacilli RepID=TRUB_BACCR Length = 307 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 164/311 (52%), Gaps = 20/311 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + GV+LL KP+GM+S+D + K+++I R GHTG LDP TG+LPIC+G ATK +Q+L Sbjct: 1 MEGVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG T T DA G++VE + V + ++ L G IEQ+P M+SA Sbjct: 61 SETKTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRMEVEKVLAELTGTIEQMPPMFSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYEL------LFIRHEGNELELEIHCSKGTYIRT 182 +K GKKLYEYAR G EV R R IT++E E + CSKGTY+RT Sbjct: 121 VKVNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRT 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +GEKLG +H+ +L R A ++ +E ++ E + E V+ + I + Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENVQNGTVESI---------FI 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-- 300 +D S +P + + + KNG ++ + V + +N + + + E + Sbjct: 232 SIDEALSKFPKMVVDEKQAEKIKNGMFLKNELEITAPFITVFD-KNDRCLAIYEHHPKHP 290 Query: 301 GRVAPRRLVVE 311 G + P +++V Sbjct: 291 GMLKPMKVLVN 301 >UniRef50_Q2BH44 TRNA pseudouridine synthase B n=1 Tax=Neptuniibacter caesariensis RepID=Q2BH44_9GAMM Length = 307 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 146/302 (48%), Positives = 209/302 (69%), Gaps = 10/302 (3%) Query: 18 DKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYR 77 +KP G+SSN ALQ+V+RIY+A +AGHTGALDPLATGMLPICLGEATKFSQ+LLDSDKRY Sbjct: 2 NKPPGISSNSALQQVRRIYDAAKAGHTGALDPLATGMLPICLGEATKFSQHLLDSDKRYI 61 Query: 78 VIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDT-FRGDIEQIPSMYSALKYQGK 134 A+LG RTD+SDADG +VEE+PV + +++ A L + F G+IEQ+PSM+SALK+QG+ Sbjct: 62 TTAKLGVRTDSSDADGAVVEEKPVPTDLTEDKIDAILQSEFSGEIEQVPSMFSALKHQGQ 121 Query: 135 KLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCG 194 LY+ AR+GI+V + R +T++E+ +E++LE++CSKGTYIR+I++DLG LGCG Sbjct: 122 PLYKLARKGIQVEVKPRKVTIHEIKLTALRDDEIDLEVYCSKGTYIRSIVEDLGHILGCG 181 Query: 195 AHVIYLRRLAVSKYPVERMVTLEHLRELVEQ--AEQQDIPAAELLDPLLMPMDSPASDYP 252 AHV L RL V + +RM++L+ LRELV + E+Q LD LL+P + D P Sbjct: 182 AHVKMLHRLDVGAFTADRMMSLDELRELVPENTTEEQQKGIQIELDKLLLPAWAAVDDLP 241 Query: 253 VVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVT----EGENGKFIGMGEIDDEGRVAPRRL 308 V L + +G V + L+R+ + + +F+G+ E+ ++ ++ P+RL Sbjct: 242 AVRLNDQQTSLIMHGQAVANANYAEGSLIRLFGTSLDSDAERFLGVAEVVEQ-QLKPKRL 300 Query: 309 VV 310 + Sbjct: 301 IC 302 >UniRef50_D1PLN1 tRNA pseudouridine synthase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN1_9FIRM Length = 297 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 162/302 (53%), Gaps = 11/302 (3%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L +DKP G +S D L K++ + GH+G LDP+ATG+L + +G+AT + L+ Sbjct: 5 NGILPVDKPAGWTSFDVLAKLRGALGTRKLGHSGTLDPMATGVLAVFIGKATAAADRQLN 64 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y R GQRTDT D G ++E PVT E+L A L F G+ Q+P MYSA+K Sbjct: 65 HDKTYEATLRFGQRTDTGDITGTVLETAPVTIGEEELRAVLPRFMGEQMQLPPMYSAVKI 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIR-HEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+ LY+ AR+G V R RPITVY + ++ + + L I CSKGTYIR + +D+G+ Sbjct: 125 NGQPLYKAARKGQTVERTPRPITVYSIEYLGTPKPGDYTLRIACSKGTYIRVLAEDIGKA 184 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG A + LRR ++ + + TL + E+ + D ++P+++ + Sbjct: 185 LGVPATLAALRRTRAGEFEISQCHTLPDILAAAEKGTLTE-------DGWILPVETVFAP 237 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 P + + + NG P + A +G R + E G F+G+ + G + +L Sbjct: 238 LPTLTVNDGVKAHLFNGCP-TSHYAAADGRYRAYDKE-GTFLGLAAVKG-GVLQVEKLFC 294 Query: 311 EY 312 E Sbjct: 295 ER 296 >UniRef50_B8I6F0 tRNA pseudouridine synthase B n=5 Tax=Clostridium RepID=B8I6F0_CLOCE Length = 309 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 107/319 (33%), Positives = 172/319 (53%), Gaps = 31/319 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L + KP GM+S D + ++++ + GH G LDP A G+LP+C+G ATK ++++ Sbjct: 1 MNGILNVLKPAGMTSFDVIGYMRKLTGQKKIGHAGTLDPSAVGVLPLCIGNATKALEFMI 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + DK YR LG TDT D+ G ++ V + + ++ +F G IEQ+P MYSA+K Sbjct: 61 NKDKVYRAELTLGISTDTQDSSGTVLSFHSVDVTENDIKKSIISFMGTIEQLPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN----------------ELELEIHC 174 GKKLYE ARQG + RE+R I +Y + IR + ++ L+IHC Sbjct: 121 IGGKKLYELARQGQTIERESRTIQIYNIDIIRIWDDSEVFESEGIPQEFAIKKVLLDIHC 180 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKGTYIRT+ D+GEKLGCG H+ +L R +Y ++ +T+E + +L E Sbjct: 181 SKGTYIRTLCHDIGEKLGCGGHMSFLVRTRAGQYDLDNSLTIEEVAQLSE---------T 231 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG-LVRVTEGENGKFIG 293 + L+ L+P++ +Y + L + NG + + RV N F+G Sbjct: 232 KSLEVHLLPVEKVFEEYDRIELNKEELFKYNNGVWLEVEKNKYKNTFYRVYN--NNSFLG 289 Query: 294 MGEIDDEG---RVAPRRLV 309 +GE+ ++G + ++ Sbjct: 290 LGEVFEKGNTLYLKSKKFF 308 >UniRef50_Q0SSD7 tRNA pseudouridine synthase B n=33 Tax=Clostridium RepID=TRUB_CLOPS Length = 294 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 112/308 (36%), Positives = 179/308 (58%), Gaps = 21/308 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGV+ + K GM+S D + V+R+ + GHTG LDP A+G+LP+CLG+ATK Y++ Sbjct: 1 MNGVINIYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPEASGVLPVCLGKATKIIDYIM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 ++ K YRV +LG TDT D +G+++ E + +++ +++F G I+Q+P MYSAL Sbjct: 61 ENKKVYRVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFVGTIDQVPPMYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-LELEIHCSKGTYIRTIIDDLG 188 K G +LYE ARQGIEV REAR IT+Y + I+ E N+ +++++ CSKGTYIR++ D+G Sbjct: 121 KQNGVRLYELARQGIEVHREARKITIYSIENIKIESNDNIQMDVCCSKGTYIRSLCYDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 EKL GA + L R+ + E + +E L E ELL+ ++ ++ Sbjct: 181 EKLNVGATMTALERIQNGPFIKEEAINIEDLTE-------------ELLEKHIISIEKAL 227 Query: 249 SDYPVVNLPLTSSVYFKNG-----NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 + + + +NG N + + L RV E +NG F+G+G+ D++G Sbjct: 228 DSFEKITVNEKFGKLLRNGVKVFDNRMYSEEVEFNKLYRVYE-DNGVFLGLGKRDEKGFK 286 Query: 304 APRRLVVE 311 + L+ E Sbjct: 287 LEKLLIEE 294 >UniRef50_Q2Y7W4 tRNA pseudouridine synthase B n=3 Tax=Nitrosomonadaceae RepID=TRUB_NITMU Length = 313 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 128/313 (40%), Positives = 189/313 (60%), Gaps = 22/313 (7%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 R I+GVLLLDK G+SSN ALQ KRI++A++AGHTG LDP+ATG+LPIC GEATKFS Sbjct: 6 KRHISGVLLLDKASGLSSNQALQTAKRIFSAHKAGHTGTLDPMATGLLPICFGEATKFSS 65 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQI-----VEERPVTFSAEQLAAALDTFRGDIEQI 122 LL +DK Y + RLG + T DA+G+I +E + V + E++ A +F G I Q+ Sbjct: 66 ALLGADKTYEAVLRLGYMSTTGDAEGEISIAAGMESQYVDLTREKIEAVRKSFIGVITQV 125 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSA+K++GK +Y +AR G+E+ R+ R IT+++L ++GNE+ + + C GTYIRT Sbjct: 126 PPMYSAIKHRGKPMYTFARAGVEIERQPRAITIHDLSIEAYQGNEMRIRVTCGSGTYIRT 185 Query: 183 IIDDLGEKLGC-GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 + +DLG LGC GA++ LRR A+ + + + TL L + D L Sbjct: 186 LAEDLGHALGCGGAYLTALRRSALGGFDLPQAYTLTGLEAMPPSQR----------DSCL 235 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL-----VRVTEGENGKFIGMGE 296 +P DS P V + +++ G + + E L VR+ + +F+G+GE Sbjct: 236 LPADSLLRSLPPVVVDSAAALSLLQGRAIPGTHPAGESLLPGRQVRLYDKAQ-RFLGLGE 294 Query: 297 IDDEGRVAPRRLV 309 I EG ++P+RL+ Sbjct: 295 ISTEGYISPKRLI 307 >UniRef50_Q3SWP7 tRNA pseudouridine synthase B n=100 Tax=Alphaproteobacteria RepID=TRUB_NITWN Length = 358 Score = 333 bits (854), Expect = 5e-90, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 167/310 (53%), Gaps = 7/310 (2%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 ++PRR RD++G + LDKP GM+S A+ VKR+++A RAGH G LDPLA+G LPI LGE Sbjct: 41 NQPRRDKRDVHGWVALDKPVGMTSTQAVAVVKRLFSAKRAGHAGTLDPLASGGLPIALGE 100 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQ 121 ATK +++D KRYR G+ DT D +G+ V +AE + A L +F G IEQ Sbjct: 101 ATKTVPFVMDGRKRYRFTVAWGEERDTDDTEGRAVATSAERPTAEAIMALLPSFTGKIEQ 160 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGTYI 180 IP YSA+K QG++ Y+ AR G VP RP+ ++ L H + E C KGTY+ Sbjct: 161 IPPQYSAVKIQGERAYDLARDGEVVPLAPRPVEIHHLNLADHQDSGHSVFEAECGKGTYV 220 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + D+G LGC H+ LRR V + M+ LEHL+ L ++A + L Sbjct: 221 RALARDMGRLLGCYGHICALRRTLVGPFDETSMIPLEHLQALCDRAASGEGN----LADA 276 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV-RVTEGENGKFIGMGEIDD 299 L+P+++ D P + + + G V G + V G+ + + E+ Sbjct: 277 LLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPNMSGTVYVTVAGRLLALAEL-G 335 Query: 300 EGRVAPRRLV 309 G + P+R+ Sbjct: 336 NGELIPKRVF 345 >UniRef50_Q89AF6 tRNA pseudouridine synthase B n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=TRUB_BUCBP Length = 302 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 149/304 (49%), Positives = 207/304 (68%), Gaps = 9/304 (2%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 R I+G++L+DKP G+SS++ LQKVK I + GHTG LDPLATGMLP+C G ATKFSQ+ Sbjct: 6 RSIDGIILIDKPYGLSSHETLQKVKGILKIKKMGHTGTLDPLATGMLPMCCGRATKFSQF 65 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 L++ KRYRVIA+LGQ+T TSD++GQI+ RP+TF+ QL L +F G I+QIPSMYSA Sbjct: 66 LMNFKKRYRVIAKLGQKTSTSDSEGQIIHVRPITFTNLQLQKVLKSFHGKIKQIPSMYSA 125 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLF--IRHEGNELELEIHCSKGTYIRTIIDD 186 +KY G LY+YARQGI + R+ R +YEL ++ LEL+I CSKGTYIRT+I+D Sbjct: 126 IKYHGHALYKYARQGIVISRKVRDAIIYELKVLGYSYKHKYLELDIICSKGTYIRTLIED 185 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +GEKL CGAHVI LRRL V Y +M+ ++ L +LV+ +L+ +L+ +D+ Sbjct: 186 VGEKLNCGAHVISLRRLQVGNYTSFQMIDIKTLNKLVKY-------NINVLEHILLSVDN 238 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 S +P VN+ +NG V+T + VR+TEG N +FIG+G+I++ + Sbjct: 239 AISCFPEVNIVPNVIKNLQNGQKVKTHSGFINQFVRITEGINRRFIGIGKINNINELYSY 298 Query: 307 RLVV 310 RL++ Sbjct: 299 RLII 302 >UniRef50_Q6F7I5 tRNA pseudouridine synthase B n=20 Tax=Proteobacteria RepID=TRUB_ACIAD Length = 318 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 140/306 (45%), Positives = 191/306 (62%), Gaps = 14/306 (4%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + R ++GV LL+KP G+SSN LQKV+ ++ A +AGHTGALDPLATG+LPICLGEATK Sbjct: 24 KISRRPVSGVFLLNKPLGLSSNGVLQKVRWLFRAQKAGHTGALDPLATGLLPICLGEATK 83 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIP 123 FS YLLDS KRY+ + +LGQ T T D +G++V+ R V + + L LD FRGDI+Q+P Sbjct: 84 FSHYLLDSTKRYQTVVKLGQVTTTGDVEGKVVQSRSVPPLTRDMLELVLDGFRGDIQQVP 143 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 MYSALK G+ LYE ARQGIE+ REARP+T++ L + + L L++ CSKGTYIR + Sbjct: 144 PMYSALKRDGRPLYELARQGIEIEREARPVTIHALKLVDFDTESLTLDVTCSKGTYIRVL 203 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 +D+GE LGCG H+ L R+ + + TLE+L +L E D LL+ Sbjct: 204 GEDIGEALGCGGHLTALHRVQTGHFELVPEYTLEYLEQLNETER----------DMLLLA 253 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 +P P V +P YF NG S + + V E + +G+ EI D+ R+ Sbjct: 254 PYAPVDYLPQVQIPEGRLKYFCNGQE---SNIDHDAVPEVLVFEGERCLGLAEITDKKRL 310 Query: 304 APRRLV 309 P+RL+ Sbjct: 311 VPKRLL 316 >UniRef50_UPI00016C0EBC tRNA pseudouridine synthase B n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0EBC Length = 290 Score = 332 bits (852), Expect = 9e-90, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 166/302 (54%), Gaps = 15/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ + K +G +S+D + K + I + GHTG LDP ATG+LPIC+GEATK YL Sbjct: 1 MDGIINIYKEKGFTSHDVVAKARGILRQKKIGHTGTLDPDATGVLPICIGEATKIVPYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D++K Y LG T T DA G++VEE V S EQ+ L TF G EQ P MYSA+K Sbjct: 61 DANKTYEAEVILGAYTTTEDASGEVVEEFSVEVSNEQVLDVLATFVGAYEQTPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGTYIRTIIDDLGE 189 G++LYE ARQ I + R +R + + EL + + ++ + CSKGTY+RT+ D+G Sbjct: 121 INGQRLYELARQNIVIDRPSRMVEILELEQMSPLKDGRFKIRVVCSKGTYVRTLCTDIGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL CGAH+ L R V ++ +E+ VTL+ L +L + +L+ ++ Sbjct: 181 KLKCGAHMGELTRTRVGEFDIEQSVTLKQLEKLNAE-------------EILISIEKMFE 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 YP V + + + + NGNP+ A RV + N FIG+ + E + + Sbjct: 228 QYPAVVVDQSYNKFLYNGNPLEVKIAAAGLFFRVYDYMN-HFIGLYKWSGEKLIVEKMFY 286 Query: 310 VE 311 E Sbjct: 287 KE 288 >UniRef50_A3WPV5 TRNA pseudouridine 5S synthase n=1 Tax=Idiomarina baltica OS145 RepID=A3WPV5_9GAMM Length = 319 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 143/318 (44%), Positives = 200/318 (62%), Gaps = 17/318 (5%) Query: 1 MSRPR-RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M + R R+GR INGVLLLDKP+ M+SN A+Q VKR+Y A + GHTGALDPLATG+LP+CL Sbjct: 1 MGQARPRKGRPINGVLLLDKPKEMTSNRAIQVVKRLYEAQKVGHTGALDPLATGLLPVCL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 GEATKFSQYLLD+DK YRV A+LG RT TSDA+G++VE+ PV S QL + F G+ Sbjct: 61 GEATKFSQYLLDADKAYRVEAQLGVRTTTSDAEGEVVEQNPVDVSDTQLNDIIAQFTGEQ 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q PS+YSALKY+GK LY YAR+GI+VPR+ R I+V + + +G+ + L++ CSKGTY Sbjct: 121 AQTPSIYSALKYEGKPLYYYARRGIDVPRKTRTISVRAIELLHRDGDFVTLQVACSKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT++DD+G+ LGCGAHV LRR V+ + +LE L + ++ Sbjct: 181 IRTLVDDMGQALGCGAHVRELRRTHVANLTDAQQWSLEALEQCDDEQRL----------A 230 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG------LVRVTEGENGKFIG 293 L P+D+ + P + + +G PV + L + + FIG Sbjct: 231 CLEPVDTLLNGLPTQTISQAEARDVMHGQPVFNRTLDTQAVGDECRLCAKSTAGHSVFIG 290 Query: 294 MGEIDDEGRVAPRRLVVE 311 + + +G++ P+R++ Sbjct: 291 VVVLRKDGKLWPKRVLAL 308 >UniRef50_Q3ZXU5 tRNA pseudouridine synthase B n=5 Tax=Dehalococcoides RepID=TRUB_DEHSC Length = 300 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 158/302 (52%), Gaps = 11/302 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L ++KP G++S D + KV+RIY+ R GH G LDP ATG++P+ LG +T+ +YL Sbjct: 1 MDGILNINKPFGITSFDVVAKVRRIYSQKRVGHGGTLDPYATGVIPVFLGRSTRLIEYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TD+ D++G+I + + E + L F+G+I QIP MYSA+ Sbjct: 61 SVSKTYLAEIELGVETDSYDSEGEITFRKTCDYVTREMIYKTLMDFQGEIIQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K++G +LY ARQGIEV R R T+Y + + + L + I C GTYIR++ DLG Sbjct: 121 KHRGMRLYNLARQGIEVERIPRVATIYGIELLNYTSPVLRVRIECGHGTYIRSLAFDLGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCGA++ L R A ++ + + L + I L+P+++ Sbjct: 181 KLGCGAYLKSLVREAYGQFNLANSLDFADLEAAKCDGKLAGI---------LLPLETAIG 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P V+L + NG + V V EN F+ + + + +G P ++ Sbjct: 232 HLPRVSLDEKNITRLVNGLEITLDRIDKPEAVAVYNAENS-FVAIIQPETDGTWHPAKVF 290 Query: 310 VE 311 + Sbjct: 291 IR 292 >UniRef50_A1HSB7 TRNA pseudouridine synthase B n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSB7_9FIRM Length = 292 Score = 332 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 111/303 (36%), Positives = 163/303 (53%), Gaps = 18/303 (5%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + KP GM+S+DA+ V+R+Y R GH G LDP A G+LP+ +G AT+ +Y D+ Sbjct: 4 GILNILKPPGMTSHDAVAFVRRLYGVKRVGHAGTLDPAAAGVLPVFVGAATRLIEYTADA 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSA-EQLAAALDTFRGDIEQIPSMYSALKY 131 DK YRV +G+ TDT D G I+ P L A L F G+IEQIP MYSA+K Sbjct: 64 DKSYRVEMTVGRETDTGDDTGNIIRTAPCVLPPISDLDALLQEFTGEIEQIPPMYSAIKI 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 G+KLY+ ARQGI V R+ R I + ++ I + ++ CSKGTYIRT+ D+G +L Sbjct: 124 GGQKLYDLARQGIIVERQPRRIKINKIQLIAVREQRIYFDVDCSKGTYIRTLCTDIGRRL 183 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GC A + +L R V + + +TLE + E+A L D + + Sbjct: 184 GCPAVMSFLVRTRVGNFQLTEALTLEEIAAEKERA--------------LQAPDLAVAHF 229 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG-RVAPRRLVV 310 P + L + + G VR +G++R+ + +FIG+GE G + P ++V Sbjct: 230 PPIFLTVAQAKAIVQGQAVRI-DCRNQGMIRLYN-DQKQFIGIGEKQGPGAPLRPVKIVC 287 Query: 311 EYP 313 P Sbjct: 288 TNP 290 >UniRef50_A8MFB1 tRNA pseudouridine synthase B n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=TRUB_ALKOO Length = 299 Score = 332 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 119/311 (38%), Positives = 180/311 (57%), Gaps = 24/311 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L + KP GM+S+D + V++ N + GHTG LDP A G+LPIC+G+ATK SQ+LL Sbjct: 1 MNGILNILKPPGMTSHDVVSVVRKKLNMKKVGHTGTLDPNAAGVLPICIGQATKISQFLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K+YR LG T+T D DG+I+ +R VT S +++ A+ +F G+ +QIP MYSA+K Sbjct: 61 DGKKKYRAELTLGIETNTEDIDGEILRQREVTSSPDEIREAVLSFIGEYKQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +GKKLYE ARQG+E+ R R +T+Y + I ++ ++ CSKGTYIRT+ D+GE Sbjct: 121 IKGKKLYELARQGVEIERAERTVTIYHIEIIEIFKEKVIFDVLCSKGTYIRTLCKDIGEV 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCG + +L R A S + ++ +T+E L+ L E ++ +L+PMD P Sbjct: 181 LGCGGVMSFLLRTASSDFSLDTAITIEELQAL------------ENVEDILLPMDYPLQH 228 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGA------PLEGLVRVTEGENGKFIGMGEIDDE---- 300 + S NGN + ++ P+ V V +F+G G + +E Sbjct: 229 MSKAIVKSAYSKQVLNGNRIYSNYLIDTIHEPIGQEVCVYL--EKEFVGFGIVRNEDHNQ 286 Query: 301 GRVAPRRLVVE 311 + RL+ E Sbjct: 287 KYIKILRLLFE 297 >UniRef50_A8FDD4 tRNA pseudouridine synthase B n=29 Tax=Bacilli RepID=TRUB_BACP2 Length = 309 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 174/314 (55%), Gaps = 23/314 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 INGVLLL K +GM+S+D + KV++I + + GHTG LDP +G+LPIC+G ATK +YL Sbjct: 2 INGVLLLHKERGMTSHDCVFKVRKILHTKKVGHTGTLDPEVSGVLPICIGRATKIVEYLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 D K Y +G T T D G+IVEE+ V S E++ AAL F+G IEQIP M+SA Sbjct: 62 DKSKTYDAEITIGFSTTTEDQTGEIVEEKKVQNPISEEEIDAALKQFQGTIEQIPPMFSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLF-----IRHEGNELELEIHCSKGTYIRTI 183 +K GKKLYEYAR+GIE+ R +R I+++ + + + CSKGTY+RT+ Sbjct: 122 VKIGGKKLYEYAREGIEIERPSREISIHRIERTTPALFENGTVSFRFTVLCSKGTYVRTL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D+G+KLG AH+ +L R + ++ +TL+ LR++ E+ +D L+P Sbjct: 182 AVDIGKKLGFPAHMSHLIRTGSGDFTLDECITLDELRDISEEG---------TVDEHLVP 232 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPV----RTSGAPLEGLVRVTEGENGKFIGMG--EI 297 ++ + P + T + +NG + + E V V +G+ + + Sbjct: 233 IERALNHLPKWEINDTLASKVENGAVLPMPDEFAHFAEEDRVAVF-APSGRCMAIYMKHP 291 Query: 298 DDEGRVAPRRLVVE 311 + + P +++ + Sbjct: 292 TKQNLMKPAKILSQ 305 >UniRef50_UPI0000E0F5A1 tRNA pseudouridine synthase B n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F5A1 Length = 331 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 160/330 (48%), Positives = 213/330 (64%), Gaps = 22/330 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R RR+GR INGV LLDKP G SSN+ LQKV+ +Y A +AGHTGALDPLA+GMLPICLG Sbjct: 1 MGR-RRKGRAINGVFLLDKPLGESSNNVLQKVRAMYGAAKAGHTGALDPLASGMLPICLG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKFSQ+LLD+DK Y V A LG RT TSDADG++V PVT + + + AA +F G + Sbjct: 60 EATKFSQFLLDADKTYEVTATLGIRTTTSDADGEVVSTLPVTSTEDDIRAACLSFVGASK 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 QIPSM+SALK++GK LY YARQGIE+ R AR IT++ L +R EG EL++ +HCSKGTYI Sbjct: 120 QIPSMFSALKHEGKPLYWYARQGIEIDRPARDITIFALDILRIEGVELDMRVHCSKGTYI 179 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE-QQDIPAAELLDP 239 R+++DD+G+ LGCGA+V L R V+ YP ++M++L+ L+ LV+ + +DP Sbjct: 180 RSLVDDIGQVLGCGAYVSRLHRSQVAGYPSDKMMSLDALQTLVDTHRIDKGSEHHPYIDP 239 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNP-----------------VRTSGAPLEGL-- 280 LL+PMD P K G P V+ +G Sbjct: 240 LLLPMDIPLYALGSTVATDAQINGVKVGMPFIPAKMTPAQVDETVVDVKAMALSKDGFEQ 299 Query: 281 VRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 V+V + E+G + E+ D+G + P+R+VV Sbjct: 300 VKVYD-ESGNIYAVAELKDDGYLHPKRVVV 328 >UniRef50_B9ZLN1 tRNA pseudouridine synthase B n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZLN1_9GAMM Length = 319 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 134/329 (40%), Positives = 193/329 (58%), Gaps = 26/329 (7%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RR +++G+LLLDKP+G SS L +VK + A +AGHTGALDP ATG+LP+C G Sbjct: 1 MARARR---EVDGILLLDKPRGPSSTQVLGRVKYLLQARKAGHTGALDPRATGLLPLCFG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDT-FRGDI 119 +ATK S +LLD+DK Y A+LG TD++D DG I+ E PV + AL+ F G Sbjct: 58 QATKVSGWLLDADKHYVAEAQLGVETDSADLDGAIIREAPVPAIEPERLRALEQQFSGAQ 117 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 EQ+P M SALK+ G++LYE AR+G+EV R RP+ ++ L L +++ CSKGTY Sbjct: 118 EQVPPMVSALKHDGQRLYELARRGVEVERPPRPVQIHALSIEAIAPERLRIDVRCSKGTY 177 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R+++ D+G LGCGA V LRR+ + MVT+E + + A ++ Sbjct: 178 VRSLVVDIGHALGCGAAVDSLRRIGHGPFEAAAMVTMEQV------EAAFEAGGAAAIEA 231 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVR----------TSGAPLEG-----LVRVT 284 +L ++ +P V+L +S ++G+P T GAP+E LVRV Sbjct: 232 MLQAPETALGHWPSVSLNAQASAAMRHGHPADPEAIESRTPGTEGAPVEAESGWPLVRVY 291 Query: 285 EGENGKFIGMGEIDDEGRVAPRRLVVEYP 313 + E G F+ +G + +GRV PRRL V P Sbjct: 292 DAEGG-FLAVGAREPDGRVRPRRLFVPAP 319 >UniRef50_UPI0000E87C37 tRNA pseudouridine synthase B n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C37 Length = 300 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 131/310 (42%), Positives = 191/310 (61%), Gaps = 13/310 (4%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +P+R DI+GV+L+DKP G SSN AL K+K I++ +AGHTG LDPLATG+LPICLGEA Sbjct: 2 QPKRIKLDISGVILVDKPLGYSSNQALSKIKWIFSPKKAGHTGTLDPLATGLLPICLGEA 61 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA-EQLAAALDTFRGDIEQ 121 TKFS +LL+SDK Y +LG R++T D++G IV+ F A +++ L F G EQ Sbjct: 62 TKFSSFLLESDKTYEASIKLGFRSNTGDSEGVIVDLNVQHFPALKEIKETLKQFSGMQEQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 P MYSALK++GK LYEYAR+G E+ R+ R I + L I + N L++ + CSKGTYIR Sbjct: 122 TPPMYSALKFKGKPLYEYARKGEEIERKKRSINIVSLDLIDYSDNVLKITVECSKGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G+KL G ++I LRR A+ VE+ TL+ + ++A D L+ Sbjct: 182 TLASDIGDKLNTGGYLIALRRTAIGSVNVEQAKTLDMIEASDKEAR----------DALI 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 P+D + ++L ++ K+G + G EG+ R+ ++ F+G+G +D G Sbjct: 232 FPIDEFLNYLDDISLVPSAEEAIKDGKTLLFKG-MKEGIYRLYN-KDKFFLGLGTLDRHG 289 Query: 302 RVAPRRLVVE 311 + RRL+ Sbjct: 290 YLKVRRLLAL 299 >UniRef50_Q18BH7 tRNA pseudouridine synthase B n=8 Tax=Clostridiaceae RepID=TRUB_CLOD6 Length = 301 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 105/300 (35%), Positives = 169/300 (56%), Gaps = 20/300 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N ++ + KP GM+S+D + +V++I N + GHTG LDP A+G+LPIC+G+ATK + +L Sbjct: 1 MNKIISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVIL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + DK Y LG TDT DA G+I+++ FS E + A DT RG+I Q+P +YSAL Sbjct: 61 NKDKSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSAL 120 Query: 130 KYQGKKLYEYARQGI--EVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 K GK++ + R G E+ + R + + ++ + +GN++ + CSKGTY+R+I D+ Sbjct: 121 KVNGKRMCDLVRSGRQSEITLKTRRVNIKDIKILSIKGNKVMFYVECSKGTYVRSICHDI 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 GE LGCGAH+ +L R + K+ ++ +TLE L E + LD L +D Sbjct: 181 GEYLGCGAHMSFLNRTSSGKFDLDNSITLEELELFYEN---------KTLDKYLYDIDYV 231 Query: 248 ASDYPVVNLPLTSSVYFKNG------NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 + V L + Y+ NG ++ + + VRV +N F+G+G++ Sbjct: 232 LDSFNYVVLNPNAIKYYSNGGSIDDKRFLKNNFDKDDEFVRVYSTDN--FLGLGKLSKHN 289 >UniRef50_Q31GK3 tRNA pseudouridine synthase B n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=TRUB_THICR Length = 303 Score = 329 bits (845), Expect = 6e-89, Method: Composition-based stats. Identities = 129/311 (41%), Positives = 178/311 (57%), Gaps = 18/311 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +++ + I+G++LL+KP+G++SN LQ+V+R+YNA +AGHTGALDP ATG+LPICLGEATK Sbjct: 3 KKQWQKIDGIVLLNKPEGVTSNGLLQQVRRVYNAKKAGHTGALDPFATGLLPICLGEATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIP 123 S LLDSDKRY +LG TD+ D DG ++ V S L F GD+ Q+P Sbjct: 63 ISGLLLDSDKRYIATLQLGLETDSGDKDGNPLKTIAVPALSKAMLETVFSQFEGDVMQVP 122 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 MYSALK+QGK LYEYAR+GI + R ARPI +YEL I E + E+ CSKGTY+RT+ Sbjct: 123 PMYSALKHQGKPLYEYARKGIHIERAARPIHIYELKLIDFENTVVRFEVLCSKGTYVRTL 182 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 +D+ + LG H+ L R + M TLE + D L P Sbjct: 183 GEDIAKALGTVGHLTGLHRTQTGALTGDEMATLEEIE--------------LNKDAYLQP 228 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR- 302 +D P ++L + +G + P LVR + + +FIG+GE E + Sbjct: 229 LDLPLKHLQAIHLNAKDTDKILHGGKLAVEE-PETLLVRFYDPQQ-RFIGVGEWQQEKQL 286 Query: 303 VAPRRLVVEYP 313 + P+RL P Sbjct: 287 LKPKRLFNLNP 297 >UniRef50_A9KNW1 tRNA pseudouridine synthase B n=6 Tax=Clostridiales RepID=TRUB_CLOPH Length = 307 Score = 329 bits (844), Expect = 8e-89, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 165/316 (52%), Gaps = 27/316 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + K +G +S D K++ I + GHTG LDP A G+LP+C+G ATK L Sbjct: 1 MNGIINVYKEKGFTSFDVCAKLRGILKQKKIGHTGTLDPDAEGVLPVCVGNATKLCDLLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK Y + LG TDT D G+++E R VT + +++ ++ F +QIP MYSA+K Sbjct: 61 DKDKVYEAVLTLGIITDTEDMTGEVLERRLVTATYDRVLEVVEQFTRTYDQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--------NELELEIHCSKGTYIRT 182 G+KLYE ARQG + R+ R +T++ + + +E+ + + CSKGTYIR+ Sbjct: 121 VNGQKLYELARQGKVIERKPRTVTIHAIDILGVTPLEEQPEIVHEVRMRVSCSKGTYIRS 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+GE L CG + L R VS + +E + L + E V+ + L+ +LM Sbjct: 181 LCRDIGEALQCGGCMKSLIRTQVSIFTLENTLRLAEIEECVKN---------QTLEQVLM 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL--------VRVTEGENGKFIGM 294 P+D P V + S + NGN + E + +RV + E+ F G+ Sbjct: 232 PVDKLFLSMPKVVVKKESCKFLYNGNQLVEDNFTWEKVSDQINIDKIRVYDSED-VFTGI 290 Query: 295 GEIDD-EGRVAPRRLV 309 E D+ + P ++ Sbjct: 291 YEYDEKKNCYQPVKMF 306 >UniRef50_Q1MZS4 TRNA pseudouridine synthase B n=1 Tax=Bermanella marisrubri RepID=Q1MZS4_9GAMM Length = 327 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 139/320 (43%), Positives = 204/320 (63%), Gaps = 17/320 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R RR+GRDI+G++++DKP GM+SN LQ+VKR+Y A +AGHTGALDP+ATG+LPICLG Sbjct: 1 MGR-RRKGRDISGIIVIDKPSGMTSNGVLQQVKRLYGAAKAGHTGALDPIATGVLPICLG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFSQ LL+SDKRY +LG+ DT+D +G+I++ V + +++ +AL FRG+I Sbjct: 60 EATKFSQRLLESDKRYITKVQLGESRDTADIEGEILDRADVPDLTQDKIESALTQFRGEI 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGI--EVPREARPITVYELLFIRHEGNELELEIHCSKG 177 Q+P MYSALK+QGKKLYE AR G ++ +AR +++ +L + + LEL++ C+KG Sbjct: 120 TQVPPMYSALKHQGKKLYELARAGEDFDIQSKARQVSILKLELLDFGDDWLELDVTCTKG 179 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIR++ +D+ + LG V LRRL Y + M LE L E+ +++E L Sbjct: 180 TYIRSLAEDVAKALGTLGFVAVLRRLGAGPYHADMMHELEQLVEIKDKSE-----DFSNL 234 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT------SGAPLEGLV--RVTEGENG 289 D LLMP + D P+V L L + + G + +G P V R+ + Sbjct: 235 DQLLMPTQTALPDVPLVELTLKQAHDLQFGRAIELNSQQFKAGEPAIAQVQLRLRYAQWD 294 Query: 290 KFIGMGEIDDEGRVAPRRLV 309 +G+GE+ +G +AP+RL+ Sbjct: 295 LLLGIGELSAQGVIAPKRLL 314 >UniRef50_Q0AYI5 tRNA pseudouridine synthase B n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=TRUB_SYNWW Length = 299 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 105/307 (34%), Positives = 167/307 (54%), Gaps = 20/307 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++G L ++KPQ M+S D ++K+K++ + GH G LDP+A G+LP+ +G T+ ++ Sbjct: 1 MHGFLNINKPQAMTSFDVIKKLKKVLPRKYKLGHLGTLDPMAEGVLPVAVGCGTRIIPFV 60 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D K Y LG +DT DA G I P Q+ L FRG Q+P MYSA+ Sbjct: 61 EDETKEYIATMTLGASSDTQDAWGVITYHTPRKIEPAQVEKVLALFRGKSRQVPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELL----FIRHEGNELELEIHCSKGTYIRTIID 185 ++GK+LYE ARQG+EV R+AR I ++EL E +L L + CS+GTYIRT+ Sbjct: 121 HHEGKRLYELARQGLEVERKAREIEIFELELLNADWEQELPQLSLRVSCSRGTYIRTLCH 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G++LGCGA++ LRR + +E V+L+++ I E L L+P+D Sbjct: 181 DIGQELGCGAYLSSLRRSRSGCFKIEEAVSLDYI-----------IEKRENLSRALLPLD 229 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGE---IDDEGR 302 P ++ P+++L NG + +G VR+ E G+ + + E +++ Sbjct: 230 YPINNLPLISLKSAELPAIINGRQISRTGKLASPRVRLYTPE-GQLLAIAEANNYNEDTV 288 Query: 303 VAPRRLV 309 + P R+ Sbjct: 289 LQPCRVF 295 >UniRef50_D1CFW9 tRNA pseudouridine synthase B n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFW9_THET1 Length = 301 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 97/308 (31%), Positives = 160/308 (51%), Gaps = 14/308 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 + R + +NG ++++KP G++S + ++K++++A R GH G LDP ATG+LPI LG Sbjct: 2 IDRKNQSKEFLNGFIVINKPLGVTSQWVVNRIKKLFSARRVGHVGTLDPFATGVLPIALG 61 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 +A + ++ + K Y G +T T D +G I+ + + S + +A L F G IE Sbjct: 62 KANRLAEVIHSQPKSYVAELSFGFKTSTGDLEGDIIAQSDIIPSPKDIAEILPEFIGQIE 121 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q P YSA+K +G++ YE ARQG E+ R + +Y L + L+L I CS GTYI Sbjct: 122 QTPPKYSAIKVEGRRAYELARQGQELTLPTRKVEIYSLEALEFRACTLKLAISCSSGTYI 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R++ +D+ E+LG ++ L R +V + +E +T+E L + + + L Sbjct: 182 RSLAEDIAERLGAYGYLSNLVRTSVGAFSIESSITIEELESVGDYLQP----------AL 231 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE--GLVRVTEGENGKFIGMGEID 298 + P D + P V L NG V+ + E LVR+ NG+ +G+ E Sbjct: 232 IHPPDDALTHLPAVMLDERDVQRISNGATVKMAHISEEPIPLVRIYSA-NGEIVGLAE-S 289 Query: 299 DEGRVAPR 306 + + PR Sbjct: 290 RDNTLFPR 297 >UniRef50_A5UZQ6 tRNA pseudouridine synthase B n=5 Tax=Chloroflexaceae RepID=A5UZQ6_ROSS1 Length = 300 Score = 327 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 157/301 (52%), Gaps = 8/301 (2%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L +DKP GM+S+D + +++R+ R GH G LDP ATG+L + LG AT+ +Y+ Sbjct: 1 MHGFLNIDKPAGMTSHDVVARIRRLSGQRRVGHAGTLDPAATGVLVVALGGATRLIEYVQ 60 Query: 71 DSD-KRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSA 128 K+YR LG T T DADG+I+ P E + AL RG I Q P MY+A Sbjct: 61 HQTLKQYRATVCLGVTTTTDDADGEIIARHPLPPLDRETVERALAPLRGTIWQTPPMYAA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 L ++G++LYE AR G+ V R + + L + + L L++ C GTYIR + DLG Sbjct: 121 LHHEGRRLYELARAGVTVETPPRQVHIERLDLVAFDPPLLTLDVVCGSGTYIRALARDLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCGAH+ LRR AV + +E + L L E +A+ + +P ++++ L+P D Sbjct: 181 AALGCGAHLAALRRTAVGTFRIEDALPLRVLEE---EAQAEALPTSDIVRRHLLPPDIAV 237 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 +D+ V + S+ ++G P+ +G I + D P ++ Sbjct: 238 ADWYAVQVDEASARRLRHGMPLVAPSGAA--PRARAHAPDGTLIAILRFDGT-YWRPIKV 294 Query: 309 V 309 Sbjct: 295 F 295 >UniRef50_UPI000178873D tRNA pseudouridine synthase B n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178873D Length = 303 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 99/309 (32%), Positives = 160/309 (51%), Gaps = 20/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G+L + KP G +S+D + KV+ + R GHTG LDP TG+LP+CLG AT+ +YL Sbjct: 4 LEGILAVHKPAGWTSHDVVAKVRGMVRLKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQ 63 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y + RLG TDT D G +VE V + ++ AL +FRG I Q+P MYSA+ Sbjct: 64 ELPKEYHAVLRLGYSTDTEDITGNVVETADEVRVTRDEALEALQSFRGQISQVPPMYSAV 123 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN----ELELEIHCSKGTYIRTIID 185 K GK+LYE AR+G V R++R +T++E+ + E+ + CSKGTYIRT+ Sbjct: 124 KINGKRLYELAREGKTVERKSRTVTIHEIEMTDFDAEGEYTEISFRVLCSKGTYIRTLCV 183 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G KLG + ++ L R + + +TLE + + ++ E L L+P+D Sbjct: 184 DIGRKLGLPSVMVKLVRTISAGITEAQCLTLEQIEQFMK---------DETLQTRLIPVD 234 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRT----SGAPLEGLVRVTEGENGKFIGMGEIDDE- 300 + + G + + +R+ + + F+G+ + +E Sbjct: 235 QAIHHLAKHTVSEEKAEAALKGQRLSSRAVEPAVDSSEPIRLYDIKEN-FLGIYKRQEET 293 Query: 301 GRVAPRRLV 309 G + P ++ Sbjct: 294 GAIVPVKVF 302 >UniRef50_C6MD69 tRNA pseudouridine synthase B n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MD69_9PROT Length = 319 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 127/315 (40%), Positives = 182/315 (57%), Gaps = 19/315 (6%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + R +I+GVLLLDKP G+SSN ALQ K+++ A + GHTG LDP+ATG+L IC GEATK Sbjct: 3 KSRKLNISGVLLLDKPYGVSSNKALQTAKQLFLAAKCGHTGTLDPMATGLLAICFGEATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQI--VEERPVTFSAEQLAAALDTFRGDIEQI 122 FS LL ++K Y +LG + T DA+G I V + + AL F G I+Q+ Sbjct: 63 FSSVLLGANKTYEATLKLGFMSTTGDAEGIISPVAATVQNPTLGECQQALSQFIGKIKQM 122 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P M+SALK+ GK LY YAR+G + R+AR ITVY++ NEL+L I C GTYIR Sbjct: 123 PPMFSALKHHGKPLYCYARKGEIIERQAREITVYDIQIQSLHCNELQLSIQCGTGTYIRV 182 Query: 183 IIDDLGEKLGC-GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 + +D+G+ LGC GA++ LRR A+ ++ + + TL L + D L Sbjct: 183 LAEDIGKALGCGGAYLTGLRRTAIDRFNLSQAYTLSALENMSASER----------DNSL 232 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS----GAPLEGL-VRVTEGENGKFIGMGE 296 +P+D DYP + L S+++ + G + G G VR+ E +F+G+GE Sbjct: 233 LPVDHLLQDYPSITLDRLSALHIQQGRNILCPPGRHGMIKNGKQVRLYT-EKNQFLGLGE 291 Query: 297 IDDEGRVAPRRLVVE 311 I E +A +RL+ + Sbjct: 292 ITIEQTIAVKRLLSD 306 >UniRef50_C7I1W4 tRNA pseudouridine synthase B n=1 Tax=Thiomonas intermedia K12 RepID=C7I1W4_THIIN Length = 345 Score = 325 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 121/321 (37%), Positives = 172/321 (53%), Gaps = 21/321 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+ + +N VLLL+KP+G++S AL +V+R A +AGH G LDPLA G+L +C G Sbjct: 1 MNVQKTPWEAVNSVLLLNKPRGLTSQQALFRVRRRLRAAKAGHGGTLDPLADGLLMLCFG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 ATKF+Q L++DKRY + +LG RT T DA+G+IVE R V S Q+ A L F G I Sbjct: 61 AATKFAQRHLEADKRYVAVLQLGVRTTTDDAEGEIVERRAVEVSRSQVDAVLPRFIGAIS 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q P +YSALK GK LY YAR G V AR + ++ + + + ++L L +HC KGTYI Sbjct: 121 QTPPVYSALKRDGKPLYAYARAGETVEVAARTVQIHSMDVLSLQNDQLALAVHCGKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + D+GE LGCGAH+ L R A + +E+ +TL+ L L Sbjct: 181 RALARDIGEALGCGAHLAALTRTASGGFSLEQALTLDEAEALASAD----------LRSR 230 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL----VRVT----EGENGKFI 292 L+P D P NL + F +G + + VRV G++ + Sbjct: 231 LLPTDVLLQSSPRQNLDAAQAQRFLHGARLSGLAPDEPVVPGEDVRVYGPLAAGQDAVLL 290 Query: 293 GMGEID---DEGRVAPRRLVV 310 G+G + + + PRRL+ Sbjct: 291 GIGAWEQGAESVVLTPRRLLC 311 >UniRef50_A8RZ93 Putative uncharacterized protein n=8 Tax=Clostridiales RepID=A8RZ93_9CLOT Length = 320 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 104/312 (33%), Positives = 163/312 (52%), Gaps = 26/312 (8%) Query: 5 RRRGRDI-NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 R + + +G++ + K G +S+D + +++ I + GHTG LDP A G+LP+CLG T Sbjct: 7 RSKEHTMYHGIINVYKEPGYTSHDVVARLRGILKQKKIGHTGTLDPAAEGVLPVCLGAGT 66 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER---PVTFSAEQLAAALDTFRGDIE 120 + L D K Y+ + LG TDT D G I+ E ++ + EQ+ A+ F+GD Sbjct: 67 RLCDMLTDRSKTYQAVMLLGCETDTQDTTGTILAEDREGALSLAEEQVNEAVMGFKGDYA 126 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 QIP MYSALK GKKLYE AR G EV R R + + ++ R E + +E+ CSKGTYI Sbjct: 127 QIPPMYSALKVDGKKLYELARAGKEVERRPRAVQILDIKVSRIELPRVWMEVTCSKGTYI 186 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT+ D+G LGCG + +L R V ++ +E +TL+ L +L +QA ++ Sbjct: 187 RTLCHDIGRLLGCGGCMEHLTRTRVDRFSIEDSLTLDQLEQLRDQA---------AVESC 237 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT------------SGAPLEGLVRVTEGEN 288 ++P++ YP + + NGNP +GA + R+ + N Sbjct: 238 ILPVEEALQSYPPLGCLPEADSLLHNGNPCFARHLDWSQSDQWKAGAEDGQMFRMYDS-N 296 Query: 289 GKFIGMGEIDDE 300 +F G+ + + Sbjct: 297 HRFTGVYQYQKD 308 >UniRef50_D2MK32 tRNA pseudouridine synthase B n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK32_9BACT Length = 325 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 101/295 (34%), Positives = 155/295 (52%), Gaps = 19/295 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVL + KP G +S+D + KV+R+ + GH G LDP ATG+LP+ LG+ T+ S +LL Sbjct: 19 HGVLNVSKPAGWTSHDVVAKVRRLLQVPKVGHAGTLDPAATGVLPVLLGKGTRLSAFLLH 78 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y + RLGQ T T DA G IV + PV E + A+ F G+ +Q+P MYSA+K Sbjct: 79 WDKEYEAVLRLGQETTTQDATGAIVRDCPVPELRPETVHEAVAQFHGEQQQVPPMYSAVK 138 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+ LY+ AR G + R +RP+T+Y + ++ L + CSKGTYIRT+ D+G Sbjct: 139 IGGQPLYKAARAGKTLDRPSRPVTIYHIEIRALALPDVTLRVRCSKGTYIRTLCADIGRV 198 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG G H+ L R V + ++R +L+ + + + + +D + Sbjct: 199 LGVGGHLSRLIRSRVGPFHLDRAWSLDDIGRVDDLFGHPGA---------FLNLDEALAH 249 Query: 251 YPVVNLPLTSSVYFKNGNPVRTS--------GAPLEGLVRVTEGENGKFIGMGEI 297 P V + NG PV + P+E L RV + + G+ + +G+ Sbjct: 250 LPAVVVDPAMVEKVMNGAPVSGATLWSEDHRETPVETLFRVKD-DMGRLLALGKW 303 >UniRef50_C3RL16 tRNA pseudouridine synthase B n=4 Tax=Bacteria RepID=C3RL16_9MOLU Length = 283 Score = 324 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 22/298 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++L++KP GM+S+D + K++RI + GH G LDP ATG+L +C+ +ATK Q+L Sbjct: 4 MDGIILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLT 63 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TDT DA G+I+E + ++ A + F G EQ P +YSA+ Sbjct: 64 SESKEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAI 123 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYEYAR G +V R +TV L ++ E N ++ ++ CSKGTYIR++ DL + Sbjct: 124 KVNGKKLYEYARAGEQVEVPTRSVTVNHLEILQIENNLIKFKVGCSKGTYIRSLCYDLAK 183 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG H+ L R + +E TLE + + + ++ + Sbjct: 184 ALGYPGHMKDLIRTKSGNFSLENCFTLEQIEN---------------GEYTTVSLEEALN 228 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 Y + + +G +++ V GK + M D G + R Sbjct: 229 SYQQLVVDDEKI--IFHGKKIKSDLNEQ----VVILNRQGKVLAMYGPDGNGYLKSIR 280 >UniRef50_Q5WFU5 tRNA pseudouridine synthase B n=2 Tax=Bacillaceae RepID=TRUB_BACSK Length = 302 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 151/307 (49%), Gaps = 20/307 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+++LDKP+G +S+D + ++++ + + GHTG LDP G+LPIC+G+ATK +Y+ D Sbjct: 5 GIVVLDKPKGWTSHDCVHQMRKWFQTRKVGHTGTLDPEVDGVLPICIGKATKVVKYMSDY 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y G T T DA G++VEE+ V F+ ++ A L F G IEQ P YSA+K Sbjct: 65 DKTYIGEVTFGVATTTEDAHGEVVEEKRVNKPFTRTEIEALLQAFIGKIEQTPPYYSAVK 124 Query: 131 YQGKKLYEYARQGIEVPREARPITVY-----ELLFIRHEGNELELEIHCSKGTYIRTIID 185 GK+LYEYAR GIEV R R + + E+ + + C+KGTYIRT+ Sbjct: 125 VNGKRLYEYARAGIEVERPTRTVEIKALTLTEITTAKPGCFSFAFSVTCTKGTYIRTLAV 184 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G+K G AH+ L R A + + L E+ L P+D Sbjct: 185 DIGKKAGYPAHMSKLTRTASGPFTQADAIPLSAFAEMSLDERLNK----------LRPLD 234 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI--DDEGRV 303 + +P V +NG + S + +G + E G + + + G + Sbjct: 235 TALQHFPRVTADKELEKRIRNGAVLEKSASFGDGRF-LFYNEQGDCLALYQAHPTKAGLI 293 Query: 304 APRRLVV 310 P L Sbjct: 294 KPETLFC 300 >UniRef50_A5EWY7 TRNA pseudouridine synthase B n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWY7_DICNV Length = 297 Score = 323 bits (828), Expect = 6e-87, Method: Composition-based stats. Identities = 115/303 (37%), Positives = 166/303 (54%), Gaps = 16/303 (5%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 RDING+LLL+KP+G+SSN ALQK + ++ A +AGH G LDP A+G+LP+ LGEATKFSQ Sbjct: 2 KRDINGILLLNKPRGISSNSALQKARALFQAKKAGHGGTLDPFASGLLPLFLGEATKFSQ 61 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMY 126 Y+L +DK+Y V R G+ T T D +G+ + P + L F+GD +Q P ++ Sbjct: 62 YMLGADKQYLVGIRFGRETTTDDCNGETLNTLPPPDLLNLDWQSVLAHFQGDYQQTPPIF 121 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SALK GK+ YE AR+GI R I + I + +L I CSKG+YIR D Sbjct: 122 SALKINGKRAYELAREGIIPEIAPRIIHIASCSVIAVNKDYAQLRIRCSKGSYIRAFARD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG L AH L R A + + + L L+ L D LL+P++ Sbjct: 182 LGRFLNSAAHAETLIREASGHFALNQAHDLSTLKTLSLSER----------DALLLPIEY 231 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 + P + +P + +GN + + GL ++ +G F+G+GE D GR+ P+ Sbjct: 232 ALKNIPPLAIPEDKIRFICHGNDIAITA--TNGLYQL--SADGHFLGIGEARD-GRLYPK 286 Query: 307 RLV 309 RL+ Sbjct: 287 RLL 289 >UniRef50_A8LL26 tRNA pseudouridine synthase B n=42 Tax=Rhodobacterales RepID=TRUB_DINSH Length = 304 Score = 323 bits (828), Expect = 6e-87, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 167/310 (53%), Gaps = 12/310 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R R++GR ++G +++DKP G+SSN + KV+ ++A +AGH G LDP ATG+L I LG Sbjct: 1 MGR-RKKGRAVSGWIVIDKPAGLSSNAVVGKVRWAFDAQKAGHAGTLDPEATGVLAIALG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK ++ D+ K Y RLGQ T+T D +G++ E S +++ AAL F GDI Sbjct: 60 EATKTVPFVTDALKAYEFTVRLGQATNTDDGEGEVTETSDARPSDDEIRAALPPFEGDIL 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTY 179 Q+P +SA+K G++ Y AR G E+ ARP+ V L FI R + + + LE+ C KG Y Sbjct: 120 QVPPQFSAVKIDGERAYARARAGQEMEIAARPLYVDSLTFIARPDPDHVTLEMVCGKGGY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R+I DLG LGC HV LRR + + LE L +L + LD Sbjct: 180 VRSIARDLGRALGCFGHVKSLRRTWSGPFELSDATPLETLEDLAK---------DPALDA 230 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 LMP+++ +D P + + +NGNP + E NG + +G Sbjct: 231 HLMPLETGLADLPELPCTPEGAARMRNGNPGMVRASDAEYGETAWASYNGTAVAVGTYRA 290 Query: 300 EGRVAPRRLV 309 G + P R+ Sbjct: 291 -GELHPTRVF 299 >UniRef50_C4GBF3 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GBF3_9FIRM Length = 315 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 110/313 (35%), Positives = 167/313 (53%), Gaps = 35/313 (11%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L + K G +S D + K++ I + + GHTG LDP A G+LP+C+G ATK + + Sbjct: 3 SGILNVYKEPGFTSFDVVAKLRGILHIRKIGHTGTLDPAARGVLPVCIGRATKAVNLMAN 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y +LG RTD+ D GQI+E PV+ S +++ + +F G +QIP MYSA K Sbjct: 63 WTKTYIADMQLGIRTDSQDMTGQILERNPVSVSEDEIQREVASFFGPQDQIPPMYSARKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GK+LY YARQGIE+ R A I +Y++ + E + +E+ CSKGTYIRT+ D+G+ L Sbjct: 123 GGKRLYHYARQGIELERRASHIVIYDIQILSMELPHVIMEVTCSKGTYIRTLCSDIGDAL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GCGA + L R+ V + + + L+ ++E +DI L P+D+ +D Sbjct: 183 GCGASMAALERIRVGDFDSKNALRLDQIQEAAAAGRLEDI---------LYPVDAVFADL 233 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE-----------------------N 288 P + LP + KNG P+ EG+ + EGE + Sbjct: 234 PALKLPEGLTKAGKNGAPI---AEKTEGITCLYEGEKQSRTGSDWRKAGLGLAFRVYLSD 290 Query: 289 GKFIGMGEIDDEG 301 G F+G+ +EG Sbjct: 291 GVFLGIYVRCEEG 303 >UniRef50_A7NAR1 tRNA pseudouridine synthase B n=19 Tax=Francisella RepID=TRUB_FRATF Length = 302 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 179/307 (58%), Gaps = 16/307 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 ++ ++NGV++++K + +SSN LQ++K ++NA +AGHTG LDP+ATG+LPIC G ATK Sbjct: 2 KKNRLNLNGVVVINKAKDISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATK 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQI 122 +QYLLD+DK Y RLG TD+ DA+G+I+ + SAE L L F GD+ QI Sbjct: 62 IAQYLLDADKEYIATIRLGIETDSGDAEGEIIAKSINIPELSAEYLEIVLAKFSGDVVQI 121 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALKY G+ LY+ AR+G V ++R I +YEL + + L++ + CSKGTYIR+ Sbjct: 122 PPMYSALKYNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRS 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+G+ LGCG H+I L+R + + LE L++L + + I Sbjct: 182 LAIDIGKTLGCGGHLIALQRTQSGPFKLSEAFRLEQLKDLSFEQKIASITN--------- 232 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 ++S D P+ +L + L+G VR+ + E KF+ + E D+G+ Sbjct: 233 -IESVFIDKPIYSLLEEEKNDLYK-RGLFADKPHLDGTVRIYDVE--KFVAIAEF-DKGK 287 Query: 303 VAPRRLV 309 + ++ Sbjct: 288 LINKKFF 294 >UniRef50_C0ZF47 tRNA pseudouridine synthase B n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZF47_BREBN Length = 308 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 166/311 (53%), Gaps = 18/311 (5%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 ++NGVL++DKP GM+S+D + +++R+Y + GHTG LDP TG+LPIC+G AT+ +Y Sbjct: 2 SNVNGVLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGHATRLVEY 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQIPSM 125 L + KRY V+ RLG T T DA G++VE+ V + E++ A ++F G++EQ+P M Sbjct: 62 LQELPKRYDVVMRLGSTTTTEDASGEVVEQAGVDAAWITTERIQALFESFLGEMEQVPPM 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIR 181 +SA+K GK+LY+ AR+G + R+AR +T+YEL + + ++ CSKGTY+R Sbjct: 122 FSAVKVNGKRLYDLAREGTVIERQARKVTLYELTLHKISVDGDTVDVAFTCTCSKGTYMR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ DLG LG AH+ LRR+ + + + L+ + E E + L Sbjct: 182 TLCVDLGRALGYPAHMKLLRRIKSGPFQEQEAIPLQQIEEQAASGED--------ISRHL 233 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI--DD 299 + + S P + +NG G E + +G+ + D Sbjct: 234 VSIPQAISFLPSFQVKPERIKAVRNGLATALPGVTAEEGSLICLFAGEDLLGIHRVCRGD 293 Query: 300 EGRV-APRRLV 309 +G P ++ Sbjct: 294 KGLFAKPEKVF 304 >UniRef50_Q5X1C5 tRNA pseudouridine synthase B n=4 Tax=Legionella pneumophila RepID=TRUB_LEGPA Length = 303 Score = 319 bits (819), Expect = 7e-86, Method: Composition-based stats. Identities = 127/301 (42%), Positives = 186/301 (61%), Gaps = 11/301 (3%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 I+G+LLL+KPQGM+SN ALQK K ++ A +AGHTG+LDPLATGMLP+C GEATK QYL Sbjct: 9 SIDGILLLNKPQGMTSNAALQKAKHLFGAKKAGHTGSLDPLATGMLPLCFGEATKICQYL 68 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 L++DK Y I RLG +T+T+D G+++ T S E++ A L+ ++G I+QIPSM+SA Sbjct: 69 LNADKSYETIGRLGSKTNTADCTGEVIFCIENYTVSHEEMIATLEKYKGKIKQIPSMFSA 128 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK++G LY AR+GIE+ R+AR I + +L + +G L + CSKGTYIR +++D+G Sbjct: 129 LKHKGTPLYRLAREGIEIERKARDIVISQLKLEQFDGECFTLTVSCSKGTYIRNLVEDIG 188 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 + L GAH+ L RL + + RM TL+ L+++ P ++ L L+P+D Sbjct: 189 DTLKAGAHMTKLHRLYTAGFENNRMYTLDELQDM---------PLSQRL-ACLIPIDQAI 238 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 V L + + G + +EG GE +FIG+G+ G + +RL Sbjct: 239 QHLTPVILSDSEVTAIRQGKVISNKTGAVEGEDLRLYGEQSQFIGIGQALIHGDIKAKRL 298 Query: 309 V 309 V Sbjct: 299 V 299 >UniRef50_Q3A4A3 tRNA pseudouridine synthase B n=2 Tax=Desulfuromonadales RepID=TRUB_PELCD Length = 306 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 109/298 (36%), Positives = 166/298 (55%), Gaps = 13/298 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L++DKPQGM+S+ + +++R++ + GH G LDPLATG+L + LG+AT+ Q+L+ Sbjct: 1 MNGILIVDKPQGMTSHAVVGRIRRLFGLRKVGHAGTLDPLATGVLVVALGQATRILQFLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +K YR LG+ TDT D++GQIV P A+ +A + G +Q+P MYSAL Sbjct: 61 QENKVYRASLVLGKTTDTQDSEGQIVATSDPGHIDAQSVADVCHSMVGSYDQMPPMYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G LY+ ARQG+EV R+ R IT+++L + E + ++HCSKGTY+RTI D+G Sbjct: 121 KKDGVPLYKLARQGVEVSRKPRRITIFDLQLLAVEPPNITFDVHCSKGTYVRTICHDIGV 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCGAH+ LRRL + + V+ VTLE + + + + LL+ + Sbjct: 181 KLGCGAHLTALRRLRSAPFDVKEAVTLEAIELMAPEDRPE----------LLLSIAEALR 230 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 +YP +N+ G P + + + EG +G G P R Sbjct: 231 EYPSLNVCPEGIKRLGYGIP--PTADMIADTIDFEEGTQVLLVGPGGALAMATYVPSR 286 >UniRef50_A7VT62 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A7VT62_9CLOT Length = 297 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 111/298 (37%), Positives = 171/298 (57%), Gaps = 17/298 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++++DKP +S D + ++ ++ + GHTG LDP+ATG+LPI +G ATK Sbjct: 1 MNGIIVIDKPPRFTSFDVVAVMRGLFGTKKVGHTGTLDPMATGVLPILIGSATKAQDLTP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DS K Y RLG TDT D+ G + E PVT + L +AL FRG+I Q+P MYSA++ Sbjct: 61 DSGKEYVAGFRLGVVTDTEDSTGTVKETFPVTADEKALESALSHFRGEILQVPPMYSAIQ 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLG 188 G +LY+ AR+GIEV REARP+T++EL + + E E + + CSKGTY+RT+ DLG Sbjct: 121 KNGVRLYDLARKGIEVEREARPVTIHELELLEYRQETGEGSIRVRCSKGTYVRTLCADLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 ++LGCG + LRR A Y ++ + L+ + + A +L+ L P+DS Sbjct: 181 KRLGCGGIMTSLRRTAACGYTIKDSIPLDE---------AKSLKAEGVLEQRLRPVDSLF 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL-----VRVTEGENGKFIGMGEIDDEG 301 +Y + + + F+NG + ++ +RV G +G F+G+G + E Sbjct: 232 LEYRPLKVTGPQAKRFQNGGALALERTGVKKEADGANIRVY-GPDGIFLGLGRVHREK 288 >UniRef50_B9YSP0 tRNA pseudouridine synthase B n=3 Tax=Nostocaceae RepID=B9YSP0_ANAAZ Length = 309 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 154/303 (50%), Gaps = 20/303 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L+KP G +S+D + +V+++ R GH G LDP ATG+L I LG+AT+ QYL Sbjct: 19 VQGFLNLNKPYGWTSHDCVARVRKLLRLKRVGHAGTLDPAATGILLIALGKATRLLQYLP 78 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y+ RLG RT T D +G+++ +P S + AL F G IEQIP YSA+ Sbjct: 79 GE-KAYQATVRLGVRTTTDDLEGEVITSQPCAGLSLADIKTALSQFIGKIEQIPPSYSAI 137 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELL---FIRHEGNELELEIHCSKGTYIRTIIDD 186 + G++LY+ AR+G V R + V + + + EL+L + CS GTYIR I D Sbjct: 138 QVDGQRLYDLARKGEMVLAPTRTVEVLNIEVLDWRDGDFPELDLALACSAGTYIRAIARD 197 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG L G + L R S + ++ VTL L ++ Q I P D+ Sbjct: 198 LGIVLNTGGTLAALIRTESSSFCLQDSVTLTDLETQLQTGTFQPI-----------PADA 246 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 P VN+ T + + G V L GLVRV E +F+G+ +I D + P+ Sbjct: 247 ALQTLPSVNISGTFAKKWCQGQQVPL-DIDLLGLVRVY--EEARFLGIAQIQDH-ILIPQ 302 Query: 307 RLV 309 + Sbjct: 303 MVF 305 >UniRef50_B0PH12 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0PH12_9FIRM Length = 300 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 158/304 (51%), Gaps = 14/304 (4%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L +DKP+G +S D + K++ I R GH G LDP+ATG+LP+ G ATK L Sbjct: 6 GILCIDKPEGFTSFDVVAKLRGIARERRVGHAGTLDPMATGVLPLFFGRATKACDILPRQ 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 DKRY +LG TDT D G ++ E+ ++ AA GDI Q P MYSA++ Sbjct: 66 DKRYLASFKLGVTTDTQDITGTVLSEQTPDADEARVRAAAAGLVGDIMQTPPMYSAVRVN 125 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLGEK 190 G++LYE AR+G+EV R ARP+TVY + F + N +++HCSKGTYIRT+I D+G Sbjct: 126 GQRLYELARRGVEVERAARPVTVYSIDFTACDVQANTFTIDVHCSKGTYIRTLIADIGAA 185 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + LRR + + + VT+E ++ + + LL P+++ Sbjct: 186 LGCGAVMTALRRTMAASFTLADCVTIEQAQQAAQDG---------VFGTLLRPVETAFCA 236 Query: 251 YPVVNLPLTSSVYFKNGNPVRTS--GAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 P L + F NG + G + +F+G+ + +G + ++L Sbjct: 237 LPSAALNEKQTKMFLNGVRLDIGRVACKRTGDTYAVYAHDRRFLGVAR-ERDGLLCMQKL 295 Query: 309 VVEY 312 Sbjct: 296 FTLE 299 >UniRef50_C6P7U8 tRNA pseudouridine synthase B n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P7U8_CLOTS Length = 289 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 99/301 (32%), Positives = 158/301 (52%), Gaps = 18/301 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP GM+S+D + +++ +N + GH G LDP A G+LPIC+G+ATK SQY++ Sbjct: 1 MDGFLNVLKPPGMTSHDVVSFLRKKFNIKKIGHLGTLDPGAAGVLPICIGKATKLSQYVV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR G TD+ D G I PV F+ +++ L F+GDI Q+P +YSA Sbjct: 61 SQSKTYRAEITFGFSTDSIDKFGNITNATPVKIFTIDRIQEVLTKFKGDILQVPPIYSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-ELELEIHCSKGTYIRTIIDDLG 188 K GKKLYEYAR+G + +A PI +Y++ + ++ + +I CSKGTYIR ++ D+ Sbjct: 121 KINGKKLYEYAREGKSIEIKASPICIYDIKLVSYDIPYRIMFDIKCSKGTYIRALVRDVC 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +KL ++ L R++V + +E TLE ++ + I + +L Sbjct: 181 DKLNIAGYMSMLIRISVGPFSLENSYTLEDIK----TDKYNMIEMSNVL----------- 225 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 +P V L +G P+ + + + FIG+G++D R L Sbjct: 226 -PFPDVYLNNFDYKKIIHGRPIENNYLDVNSNFVKLYNPDNLFIGIGKVDSSKIYVERLL 284 Query: 309 V 309 V Sbjct: 285 V 285 >UniRef50_C8NA97 tRNA pseudouridine synthase B n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA97_9GAMM Length = 298 Score = 315 bits (809), Expect = 9e-85, Method: Composition-based stats. Identities = 122/315 (38%), Positives = 169/315 (53%), Gaps = 18/315 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M + ++ I+GVLLLDKP G+SSN ALQ+ + +Y A +AGH G LDP ATG+LP+ G Sbjct: 1 MGKRKK----IDGVLLLDKPAGISSNQALQQARWLYQAEKAGHGGTLDPFATGLLPVLFG 56 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDI 119 EA+KF +Y LD DK Y G TDT D G ++ E P A A F G Sbjct: 57 EASKFGRYFLDGDKAYEATLAFGTETDTGDLSGAVIREAAPPPLDAVDWVALCAGFSGVQ 116 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q+P +YSALK G++ Y AR+G EAR + ++EL F+ +G+ + CSKGTY Sbjct: 117 RQVPPVYSALKVGGERAYALARRGELPQLEAREVVIHELRFLGMDGDGARFFVRCSKGTY 176 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR+++ D+ LG H LRR+AV+ M L LR E + L Sbjct: 177 IRSLLRDMAAALGSAGHTHALRRVAVAGLTA--MTPLATLRAWQEAGDM------TALQA 228 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 LL+P+D + P V +P + +NGN + + G V + +G +F G+GE D Sbjct: 229 LLLPLDCCVAHLPRVVVPPEKLRFIRNGNDIACAAP--HGEVALYDG--ARFFGVGEARD 284 Query: 300 EGRVAPRRLVVEYPA 314 GRV P+RL PA Sbjct: 285 -GRVFPQRLCALPPA 298 >UniRef50_C6IW07 tRNA pseudouridine synthase B n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IW07_9BACL Length = 305 Score = 315 bits (809), Expect = 9e-85, Method: Composition-based stats. Identities = 99/310 (31%), Positives = 147/310 (47%), Gaps = 20/310 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + KP G +S+D + K + I R GHTG LDP TG+LP+CLG AT+ +YL D Sbjct: 6 GILPIHKPAGFTSHDVVAKCRGILKMKRIGHTGTLDPAVTGVLPLCLGRATRMVEYLQDL 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y LG TDT D G+I+E+ V + E + L F G I QIP MYSALK Sbjct: 66 PKEYEATLVLGVATDTEDMTGEIIEQVNEVQVTEEDVRRVLSRFVGTISQIPPMYSALKQ 125 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEG----NELELEIHCSKGTYIRTIIDDL 187 GK+LYE AR+G V R+ R +T+Y+L + + CSKGTYIRT+ D+ Sbjct: 126 DGKRLYELAREGKTVERKPREVTIYQLELLAFHPEGLHPRISFRALCSKGTYIRTLCVDI 185 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G LG A + L+R + +TL+ + QD L+P+D Sbjct: 186 GRALGVPAAMTELKRTMSAGITESHCLTLDEVARHAASGSLQD---------YLLPVDRA 236 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVR----TSGAPLEGLVRVTEGENGKFIGMGEIDDEGR- 302 P + G + + +R+ E +F+G+ +++ + Sbjct: 237 VQHLPAHTVAAEKVKAALQGQRLSPSVVSPAVKRGETLRLYSPEQ-QFLGIFRVEEGTKA 295 Query: 303 VAPRRLVVEY 312 V ++ + Sbjct: 296 VKAVKVFLPE 305 >UniRef50_B5YJI4 tRNA pseudouridine synthase B n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJI4_THEYD Length = 302 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 172/304 (56%), Gaps = 5/304 (1%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N V++L+KP+G +S D + KVK+I +AGH G LDP+ATG+L +C+ EATK + +L+ Sbjct: 1 MNAVVVLNKPKGFTSQDTVTKVKKILKVKKAGHAGTLDPMATGILIVCINEATKITPFLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + +K Y A+ G TDT DA+G+IV EQ+ + L+ F G+I QIP MYSA+ Sbjct: 61 ELEKEYVFKAKFGISTDTYDAEGKIVRVVEDFKLEREQVESILEEFTGEIMQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GK L+E AR+G+E+ R+ + + ++ + E + + CSKGTY+R++ D+GE Sbjct: 121 KVGGKPLHELARKGVEIERKPKKVIIHSIKIESFEPPFVTFRVVCSKGTYVRSLCHDIGE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL GAH++ L R + ++ VE + LE L+ L+ + + + +D Sbjct: 181 KLRIGAHIVELTRTRIGEFRVEESIELEELKSLISNNLDSSAFSFQP-KKGIFSIDQALY 239 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTS-GAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 P V + F NGNPV+ G G V+V + GK +G+G + + P R+ Sbjct: 240 FLPSVTMQDYIIPRFLNGNPVKIPSGIVPAGWVKVKDT-RGKILGIG-YGNGVIIKPERI 297 Query: 309 VVEY 312 + E Sbjct: 298 IWEE 301 >UniRef50_Q4L5X4 tRNA pseudouridine synthase B n=68 Tax=Bacilli RepID=TRUB_STAHJ Length = 305 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 94/311 (30%), Positives = 159/311 (51%), Gaps = 22/311 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L + K +G++S+D + K+++I + GHTG LDP +G+LP+C+G AT+ S Y++D Sbjct: 3 NGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVSGVLPVCIGTATRVSDYVMD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV---TFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG+ T T D G+++++ V + ++ A L F G IEQ+P MYS+ Sbjct: 63 MGKSYNATITLGESTTTEDQTGEVIDKIDVQANAININEVDAVLKQFEGIIEQVPPMYSS 122 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYEL-----LFIRHEGNELELEIHCSKGTYIRTI 183 +K GKKLYEYAR+G V R R + + + L +E+ C KGTYIRT+ Sbjct: 123 VKVNGKKLYEYARKGETVERPIRKVNIDSIARTSELQFEDGKCHFNIEVKCGKGTYIRTL 182 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D+G++LG AH+ L R+ + ++ +TL+ + +L EQ + L P L P Sbjct: 183 ATDIGKQLGYPAHMSLLTRINSGGFDIKDSITLDQISQLHEQ---------DTLQPHLFP 233 Query: 244 MDSPASDYPVVNLPLTSSV-YFKNGNPVRTSGAP--LEGLVRVTEGENGKFIGMG--EID 298 ++ P + + + NG +E + + E K + + + Sbjct: 234 LEYGLKSLPKIYVSDENIKTRILNGQKFNKKQFNQTIEQQLVFIDSETEKVMAIYIQHPE 293 Query: 299 DEGRVAPRRLV 309 + P+++ Sbjct: 294 KNHEIKPKKVF 304 >UniRef50_C7H6A8 tRNA pseudouridine synthase B n=2 Tax=Faecalibacterium prausnitzii RepID=C7H6A8_9FIRM Length = 295 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 162/303 (53%), Gaps = 11/303 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G+L++DKP +S D + K++ I + GH+G LDP+ATG+LP+ G A+K L Sbjct: 2 MQGILIVDKPTDWTSFDVIAKLRGILGTRKLGHSGTLDPMATGVLPVFCGGASKAVDLQL 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K YR + RLGQRTDT D G ++E PVT ++L A L F G Q P MYSA+K Sbjct: 62 DHTKAYRAVLRLGQRTDTGDVTGTVLETTPVTAGEQELLAVLPQFLGPRMQTPPMYSAVK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTYIRTIIDDLGE 189 G+ LY+ AR+G V R+ARPI + ++ + NE L + CSKGTYIR +++++ E Sbjct: 122 INGQPLYKLAREGKTVERKARPIEILDIRYEGSPAENEYALTVKCSKGTYIRVLLEEIAE 181 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +G + LRR+A Y TLE ++ + E L L++P++S + Sbjct: 182 AMGQKGTMSALRRVAAGVYSEADAHTLEEIQAAKDAG-------PEALQALMLPVESVFA 234 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P++ + NG P + +G RV G+F+G+ + G + +L Sbjct: 235 SLPLLVADERVEQHLYNGCP-TSRYPAADGRYRVRNA-GGQFLGLANVV-NGVLKVEKLF 291 Query: 310 VEY 312 VE Sbjct: 292 VER 294 >UniRef50_Q057K1 TRNA pseudouridine 55 synthetase n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057K1_BUCCC Length = 311 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 127/308 (41%), Positives = 198/308 (64%), Gaps = 4/308 (1%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKF 65 + ++ NG+LLLDKP+G+SSN LQ++K+I+ A +AG+TG+LDP+ATGMLPI G ATKF Sbjct: 4 QNNKNYNGILLLDKPKGISSNGILQQIKKIFLAKKAGYTGSLDPMATGMLPILFGNATKF 63 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 S+YL DS K+Y VIA+LG+ T T D G+ ++ + + + + L++F G+I Q+P M Sbjct: 64 SKYLTDSAKKYHVIAKLGETTSTGDLSGKKLKIKSININTNDIYKILNSFIGEIYQVPPM 123 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA+KY G LY+YAR GI VPR+ R + +Y++ FI+ LE + CSKGTYIR++++ Sbjct: 124 FSAIKYNGIPLYKYARLGILVPRKKRKLFIYKINFIQFVNPFLEFTVICSKGTYIRSLVN 183 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL---LDPLLM 242 D+G KL CG HVI+LRRL + Y ++VTL +L +E + I L L+ L+ Sbjct: 184 DIGNKLFCGGHVIFLRRLYIKPYNSSKLVTLSNL-HFIENKNIEQIHKFYLFNMLNTFLL 242 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 P+ S YP++ + + F+ + + GLV+V +N F+G+G+I+ G Sbjct: 243 PVSSFFFKYPIIKILHSDINNFQKKIKIALNFFSTIGLVQVITKKNNIFLGIGKINKFGI 302 Query: 303 VAPRRLVV 310 + P+ ++ Sbjct: 303 LTPKCVLC 310 >UniRef50_D1VSB0 tRNA pseudouridine synthase B n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB0_9FIRM Length = 293 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 97/294 (32%), Positives = 166/294 (56%), Gaps = 14/294 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+LL++K +G++S+D + V++ N + GH G LDP+ATG+L I +G+ATK S Y++ Sbjct: 1 MDGILLINKKKGITSHDVISIVRKKLNIKKVGHCGTLDPMATGLLIILIGKATKLSDYIM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y +LG TD+ D G I+E + T ++L L +F G+++QIP MYSA+K Sbjct: 61 KNRKTYLAKVKLGLLTDSYDITGNILENQDFTVDKDKLIEVLKSFVGEVKQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG-NELELEIHCSKGTYIRTIIDDLGE 189 GKKLYEYAR+G+EV R+ R + +Y + + G +E + S GTYIRT+ D+G Sbjct: 121 VNGKKLYEYARKGVEVKRKERLVKIYSMELLDFNGKDEFVINCDVSSGTYIRTLAFDIGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL ++ L+R ++S + + + ++ + + E L+ ++PM+ Sbjct: 181 KLNTYGTLLELQRNSISNFNLNECLNIDDIESI----------DLEELNNRIIPMEKALL 230 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID-DEGR 302 ++ + P NG +T + + R+ + KFIG+G ++ D GR Sbjct: 231 NFEKFSYPSDFYDKLLNGIKFQTEKDFEDKIFRLYCRD--KFIGLGRMEVDNGR 282 >UniRef50_B1YI60 tRNA pseudouridine synthase B n=2 Tax=Exiguobacterium RepID=B1YI60_EXIS2 Length = 302 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 107/296 (36%), Positives = 152/296 (51%), Gaps = 19/296 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GVL LDKP GM+S+D + +++R++ + GHTG LDP TG+LPICLG ATK ++++ D Sbjct: 5 GVLPLDKPAGMTSHDCVFRLRRLFQTKKVGHTGTLDPEVTGVLPICLGRATKLARFITDE 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQIPSMYSAL 129 KRY +G T T DA G+ V E PVT + +Q+ L G IEQ P YSA+ Sbjct: 65 GKRYVAEVTIGYATTTEDAHGETVRETPVTPASITEQQVDEILQQLTGQIEQTPPYYSAV 124 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLF-----IRHEGNELELEIHCSKGTYIRTII 184 K GKKLYEYAR+GIEV R R + + L ++EI C KGTYIRT+ Sbjct: 125 KVNGKKLYEYARKGIEVERPTRTVQIDTLERTSGLTFADGLCRFQIEIACGKGTYIRTLA 184 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 ++GE+LG AH+ LRR + VTL L E ++P+ Sbjct: 185 VEIGEQLGYAAHMSELRRTSSGMMSETEAVTLATLEA---------CETVEERMQYVLPI 235 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 + +P + + ++ NG + G P+E E G + + +D E Sbjct: 236 EQVIQKWPRLTVNAETAARVLNGAKL--PGIPVEFERFTVYNEEGIPLAIYRLDSE 289 >UniRef50_A5CXX8 tRNA pseudouridine synthase B n=3 Tax=Bacteria RepID=A5CXX8_VESOH Length = 302 Score = 314 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 135/312 (43%), Positives = 198/312 (63%), Gaps = 12/312 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R +GR ING++LLDK G+SSN ALQKVKR++ A +AGHTGALD A+G+LPICLG Sbjct: 1 MLRRNPKGRSINGIVLLDKDIGLSSNAALQKVKRLFFAKKAGHTGALDFSASGILPICLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 +ATK +Q+LL+ DKRY V +LGQ +DT D +G I++ +P S ++A +F+G+I Sbjct: 61 QATKIAQFLLEDDKRYFVRGKLGQISDTGDCEGSIIKTQPFEHLSDSEIAKVTASFKGNI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 QIP MYSALK G+ LY+ AR+GIEV RE+R +T+Y+++++ ++ L LE+ CSKGTY Sbjct: 121 FQIPPMYSALKRDGQPLYKLARKGIEVERESRLVTIYKIIYLGYKNGILSLEVTCSKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+I+D+GEKL CGAHVI LRR + + + +T L L + LD Sbjct: 181 IRTLIEDIGEKLSCGAHVIELRRTGFAHIDIRQTLTFSELEILASN-------DYQALDE 233 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV-TEGENGKFIGMGEID 298 ++ + V L S+ K G ++T +GL++V E +F+G+G+ Sbjct: 234 KILASEDMLLGLEDVYLSKVQSLDIKFGREIQTDK---QGLLKVKLFNEKKQFLGIGQCQ 290 Query: 299 DEGRVAPRRLVV 310 G + P++L + Sbjct: 291 GNGIILPKKLFI 302 >UniRef50_C8P7Y2 tRNA pseudouridine synthase B n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P7Y2_9LACO Length = 317 Score = 314 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 160/309 (51%), Gaps = 19/309 (6%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + ++G++ L K +GM+S D + +++RI + GH+G LDP G+LPIC+G ATK +Y Sbjct: 17 QKMDGIIPLYKERGMTSFDCVSRLRRILKTRKIGHSGTLDPAVDGVLPICVGNATKAVEY 76 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMY 126 L+ S K Y+ +G+ T+T D DG++V + PV S EQ+ AA+ G I Q+P MY Sbjct: 77 LMQSGKIYQGELVIGRATETEDFDGRVVAQTPVPAPLSDEQVRAAMAKLTGKITQVPPMY 136 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELL------FIRHEGNELELEIHCSKGTYI 180 SA+K GK+LYEYAR G V R AR +T+ E H+ + ++ CSKGTYI Sbjct: 137 SAVKVNGKRLYEYARAGETVERPARQVTITEFTLVRSHYDQEHQEQHVFFKVACSKGTYI 196 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT++ DL +LG + +L RLA + +++ ++L ++ V + + Sbjct: 197 RTLVVDLARQLGYPGAMKWLTRLASGGFTLDQTLSLADIQTAVAN---------QTIKRY 247 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 L P+D DYP V L +NG + + V +G+ + + Sbjct: 248 LYPLDYALKDYPAVELTDQQWRAVQNGGWLTAAELS-PAAAEVVLKYDGQVKALYH-QAD 305 Query: 301 GRVAPRRLV 309 P ++ Sbjct: 306 NHYQPTKMF 314 >UniRef50_O66922 tRNA pseudouridine synthase B n=2 Tax=Aquificaceae RepID=TRUB_AQUAE Length = 287 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 169/302 (55%), Gaps = 17/302 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G LL+DKP+G++S + +++VK A +AGHTG LDP+ATG+L I + +AT+FSQ+ + Sbjct: 1 MDGALLIDKPKGITSTEVVERVKEKLKARKAGHTGTLDPIATGLLIILINKATRFSQFFI 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K YR + G TDT DA G++VE + ++L L+ FRG+I Q P +SA K Sbjct: 61 GMPKTYRFTVKFGAETDTYDAQGKVVETYEGELNCDKLKEVLNEFRGEILQTPPPFSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELL--FIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +G++ YE AR+G +V + ITVY L E E S G Y+R++ D+G Sbjct: 121 IKGRRAYELARKGKKVELKPVKITVYSLELLSCNPREKEAEFLAEISSGGYVRSLAYDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +KLG G ++ LRRL + + VE V+LE ++E + ++P+D+ Sbjct: 181 KKLGIGGYMKELRRLKIDEISVEEAVSLEEFL------------SSENPEEYVLPVDTLF 228 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 P V L + G + EGLV++ E+ KFIG+GE+ G ++P+RL Sbjct: 229 RVIPEVRLNTFEAGKILQGKRILIKNYDYEGLVKIY--EDSKFIGIGELKG-GVLSPKRL 285 Query: 309 VV 310 +V Sbjct: 286 LV 287 >UniRef50_C0WBC5 tRNA pseudouridine synthase B n=1 Tax=Acidaminococcus sp. D21 RepID=C0WBC5_9FIRM Length = 288 Score = 313 bits (803), Expect = 5e-84, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 155/300 (51%), Gaps = 17/300 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ + KP GM+S+D + +++I + GH G LDP+A G+LP+ G+AT+F +Y Sbjct: 1 MDGIFNVLKPPGMTSHDVVGAMRKILQMKKIGHAGTLDPMAAGVLPVFTGQATRFLEYAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR G RTDT D +G+++ E PV +L L +F G+ Q+P MYSA+ Sbjct: 61 HDRKTYRAELTFGFRTDTGDLEGKVLAESPVRDLDLAELKETLQSFVGEGMQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 GKKLY+ ARQGI V RE RPIT+++L + + L E+ CSKGT+IRT+ +D+ + Sbjct: 121 SVGGKKLYKLARQGIVVEREPRPITIHDLSLLTYRKKTLLFEVTCSKGTFIRTLCEDIAK 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL + +L R V + +E TLE +++ + +D Sbjct: 181 KLAMEGTMSFLLRTKVGDFTLENAHTLEEIQQDPYGTA--------------LSLDVVLR 226 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 +P + + G G EG + V E + IG+ +GR+ P +++ Sbjct: 227 HFPHREVNDIQARRIAQGVATTVRGI-EEGQLYVIERNGHEVIGLARA-KQGRLCPHKII 284 >UniRef50_C2C2D8 tRNA pseudouridine synthase B n=3 Tax=Listeria RepID=C2C2D8_LISGR Length = 312 Score = 313 bits (802), Expect = 6e-84, Method: Composition-based stats. Identities = 97/317 (30%), Positives = 157/317 (49%), Gaps = 20/317 (6%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 + + G++ L K GM+S+D + ++++I + + GHTG LDP G+LPIC+G ATK + Sbjct: 2 EEKGMEGIIPLWKEPGMTSHDCVFRLRKILHTKKVGHTGTLDPDVAGVLPICIGRATKLA 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSM 125 +Y+ K Y +G T T DA G+I+ E+ V+ SAEQ+ A+ G+I Q+P M Sbjct: 62 EYVTAEGKTYIADVSIGTATTTEDASGEIIAEKAVSEISAEQIEEAIHQLEGEIAQVPPM 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR------HEGNELELEIHCSKGTY 179 YSA+K G+KLYEYAR G V R R + ++ + + E +EI C KGTY Sbjct: 122 YSAVKVNGRKLYEYARNGETVDRPVRKVQIHAIKRLDAPQSITAEAPTFTIEISCGKGTY 181 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ +GE LG AH+ L+R + E L + +++ +Q Sbjct: 182 IRTLAVMIGEILGYPAHMSALKRTRSGYFETEHCFRLAEIEAMMKAEDQ----------H 231 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPV-RTSGAPLEGLVRVTEGENGKFIGMGEID 298 L+P++ ++ P + + NG + A + RV GK + + + Sbjct: 232 FLLPLEKGIAEMPRIEVNAAVHSEILNGKVMPEYLFAAVNNEARVAVFHEGKLVAIYKPH 291 Query: 299 DEG--RVAPRRLVVEYP 313 E P +++ P Sbjct: 292 PEKAACWKPEKVIELRP 308 >UniRef50_A0LE16 tRNA pseudouridine synthase B n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LE16_MAGSM Length = 319 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 169/316 (53%), Gaps = 17/316 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R RR+G I+G L + K G+SS+ +++V R AN+AGH G LDP + G+LPI LG Sbjct: 1 MGRRRRKGVVIHGWLAIHKEPGLSSSQVVERVIRTTKANKAGHGGTLDPFSEGVLPIALG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK S +L+ DK YR + GQ TD+ D G ++EE+ S +L A L F G+IE Sbjct: 61 EATKTSGMVLNGDKSYRCWLKFGQETDSGDLTGVLLEEQGRVPSEAELRAVLPQFMGEIE 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+P ++SAL+ G++ Y+ AR+G EV +R + + L + E + L++ C KGTYI Sbjct: 121 QVPPVFSALRVDGERAYKRARRGEEVQLASRRVRIDRLELVGFEADTAVLDVACGKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R++ D+ L AH++ L R + + VTLE LRE + L + Sbjct: 181 RSLGVDIARALHSRAHLVRLLRTGTMGFGLNDAVTLEQLREACSEGR---------LQEI 231 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTEGENGKFIGMGEIDD 299 L P+D D P + + + + G V A G+VR+ + +G+F +GEI Sbjct: 232 LYPVDRVLDDIPALRMTGNAWYRLRQGQEVEVEDAATPAGMVRL-QDPDGQFGLLGEISA 290 Query: 300 EG------RVAPRRLV 309 + R+ P RL Sbjct: 291 QADLQGLRRIKPTRLF 306 >UniRef50_B0NZN2 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NZN2_9CLOT Length = 299 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 91/303 (30%), Positives = 150/303 (49%), Gaps = 16/303 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L + K + +S+D + K++ I + GHTG LDP A G+LP+CLG+ TK L Sbjct: 3 NGLLNIYKEKDFTSHDVVAKLRGILRQKKIGHTGTLDPNAEGVLPVCLGKGTKLCDMLTG 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K+Y+V + TDT D G + + + + +F G+ +Q+P MYSA K Sbjct: 63 TKKQYKVSFVFEKETDTEDIWGTVTKTHEPLKQDAPIKDTILSFVGEYDQVPPMYSAKKI 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GKKLYE AR+G + R+ I +Y++ I E+ + + CSKGTYIR++ D+G KL Sbjct: 123 NGKKLYELAREGKIIERKPERIRIYDISDIEISYPEVTMTVTCSKGTYIRSLCRDIGHKL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GA + L R S + +E TL + E V+ + ++ ++P++ Y Sbjct: 183 QNGACMTKLVRTRSSGFQLEYAHTLSEIEEAVKTGK---------IEEWIIPIEKVFLKY 233 Query: 252 PVVNLPLTSSVYFKNGNPVRTS-----GAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 + NGNP++ +RV + E+ +FIG+ + P Sbjct: 234 QKGTVKKDYDKVLFNGNPLKKEMFYEIDLDTTKKLRVYD-ESEQFIGIYYW-KKNMFFPD 291 Query: 307 RLV 309 ++ Sbjct: 292 KIF 294 >UniRef50_C9KKC7 tRNA pseudouridine synthase B n=3 Tax=Veillonellaceae RepID=C9KKC7_9FIRM Length = 298 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 152/310 (49%), Gaps = 22/310 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP GMSS+D + V+++ + R GH G LDP A G+LPI +G+A + +YL Sbjct: 2 MDGFLNILKPPGMSSHDVIGAVRKVLHMKRVGHAGTLDPAAAGVLPIAVGQAARLIEYLE 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQIPSMYSA 128 +DK YR G TD+ D G+I EE S + + AL F G I Q P +SA Sbjct: 62 LADKTYRAELTFGFATDSGDDTGEITEEVTDFTMPSQQAIEHALLGFTGKIRQTPPAHSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDD 186 +K GK+ + R+G EV +R +T++ L + + E ++ ++ CSKGTYIR++ D Sbjct: 122 IKIGGKRACDLLREGKEVEIPSREVTIHALDIVAYHPEEKKILFDVQCSKGTYIRSLCLD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G LG A + +L R V + + +TLE L E E A ++ Sbjct: 182 IGAALGLPATMSFLVRSRVGDFALADALTLEELAEAGESA--------------ILEPAH 227 Query: 247 PASDYPVVNLPLTSSVYFKNG-NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-GRVA 304 S +L F NG P ++RV G+F+G+G D V Sbjct: 228 FLSHLERYDLDPRREKPFCNGLGTGERRHVPETDILRVYSA--GRFLGIGRYDRRSQEVI 285 Query: 305 PRRLVVEYPA 314 P ++V PA Sbjct: 286 PAKVVCREPA 295 >UniRef50_Q98BI6 tRNA pseudouridine synthase B n=2 Tax=Mesorhizobium RepID=TRUB_RHILO Length = 325 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 110/326 (33%), Positives = 170/326 (52%), Gaps = 18/326 (5%) Query: 1 MSRP-RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M R +++GR ++G ++LDKP GM S +A+ K+K ++ A +AGH G LDPLA+GMLPI L Sbjct: 1 MGRRGKKKGRPVSGWVVLDKPVGMGSTEAVSKIKWLFQAEKAGHAGTLDPLASGMLPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 GEATK Y+ D K YR GQ T D +G + + + + ++ A L + G I Sbjct: 61 GEATKTVPYVQDGAKIYRFTVAWGQERSTDDLEGPVTKSSDLRPAEAEVKALLPKYTGVI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q P +SA+K G++ Y+ AR+G V AR I + L I H + E+ C KGTY Sbjct: 121 MQTPPQFSAIKIAGERAYDLAREGETVDIPAREIEIGRLDIIEHHADHTVFEVECGKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIP-AAELLD 238 +R++ D+G LGC H+ LRR+ V + E VT+ L A+ +D P A+ D Sbjct: 181 VRSLARDMGRDLGCFGHISDLRRVEVEPFTSEDFVTIAELEAARFGAQGEDKPEPADDAD 240 Query: 239 PLLMPMD------------SPASDYPVVNLPLTSSVYFKNGNP--VRTSGAPLEGLVRVT 284 + +P+D + P + + ++ + GNP +R AP+E Sbjct: 241 AIDVPVDFGAIDALLVDTSAALDCLPQIAISDDAATKIRLGNPVIIRGRDAPVEAE-EAC 299 Query: 285 EGENGKFIGMGEIDDEGRVAPRRLVV 310 GK + +G I ++G P+R+ Sbjct: 300 ATARGKLVAIGAI-EQGMFKPKRVFA 324 >UniRef50_A8ZZ61 tRNA pseudouridine synthase B n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZ61_DESOH Length = 303 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 96/298 (32%), Positives = 149/298 (50%), Gaps = 19/298 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+++++KP G++S + VKR A + GH G LDP ATG+L + AT+ +++ L Sbjct: 6 DGIIVVNKPAGITSAKVVALVKRHTGARKVGHAGTLDPFATGVLVCLINRATRLAEFFLA 65 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTF---SAEQLAAALDTFRGDIEQIPSMYSA 128 SDK Y + LG TDT D G + + S + + + +F G+ EQ P +SA Sbjct: 66 SDKTYAAVMCLGVETDTQDRTGTVTAVCDTSLQTVSDDAIRRVMTSFEGEGEQRPPAFSA 125 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K+QG LY ARQG+ V + ARP+ + L + E+ CS GTYIRT+ D+G Sbjct: 126 VKHQGVPLYRLARQGVYVEKPARPVVISSLTVQEICWPMVRFEVTCSSGTYIRTLCADMG 185 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCG H+ L R + + R V LEHL +L + + D LL+PM Sbjct: 186 RALGCGGHLYALERTRAGGFDLARAVDLEHLADLCKAGKATD---------LLVPMSEAL 236 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRT------SGAPLEGLVRVTEGENGKFIGMGEIDDE 300 S P P + + G + A EG +VT+ +G+ + + + +E Sbjct: 237 SGMPRFTAPPSLAGRIAAGGQLTAADFAGFPAADAEGYFQVTDA-DGRLLAVVQRHEE 293 >UniRef50_B8FCY8 tRNA pseudouridine synthase B n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCY8_DESAA Length = 340 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 97/267 (36%), Positives = 147/267 (55%), Gaps = 12/267 (4%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 +G +G++++DKP G++S AL KVK+ +AGHTG LDP ATG+L CLG AT+ + Sbjct: 8 KGAVNHGIIVVDKPSGITSAKALDKVKKTLGVKKAGHTGTLDPFATGVLVCCLGAATRLA 67 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQI---VEERPVTFSAEQLAAALDTFRGDIEQIP 123 ++ L DK Y + LG TDT D G++ +E + +Q+ A F+G+I+Q P Sbjct: 68 RFFLHGDKTYEAVMHLGIETDTQDLTGEVASRMEAEAAQVTPQQIREAAARFQGEIDQFP 127 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 +YSALK+QG LY++AR+G V ++AR IT+Y L CS G YIRT+ Sbjct: 128 PVYSALKHQGVPLYKWARKGTPVQKDARRITIYSLDVTDINPPMAGFTARCSGGAYIRTL 187 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D+G +LGCGAH+ LRR S + +E VTL+ L +LV+ + ++ + P Sbjct: 188 CADIGRELGCGAHLHALRRTENSGFSIEEAVTLDQLEDLVQSGK---------INEHVAP 238 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPV 270 M P ++ +G + Sbjct: 239 MAHALRQMPEYTASSQTAKKITHGAAL 265 >UniRef50_A5D2S3 tRNA pseudouridine synthase B n=3 Tax=Peptococcaceae RepID=TRUB_PELTS Length = 316 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 167/303 (55%), Gaps = 24/303 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + KP GMSS+D + +++RI+ +AGHTG LDP A G+L +CLG AT+ +++LL Sbjct: 1 MNGIVNVLKPPGMSSHDVVDRIRRIFGVKKAGHTGTLDPGAAGVLVVCLGVATRLARFLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE-QLAAALDTFRGDIEQIPSMYSAL 129 DK YRV G T T D+ G+I ++R +F E + L F G++ Q+P M SA+ Sbjct: 61 GEDKEYRVEITFGMSTSTGDSYGEITDQRDASFLKEHDIIRVLPEFTGEVRQVPPMTSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG-----NELELEIHCSKGTYIRTII 184 K++GKKLYE AR+G+ V R+ R + + L FIR G + + CSKGTY+R++ Sbjct: 121 KWRGKKLYELAREGLVVERQERAVYIKSLEFIRGSGWGTPSPRALMHLSCSKGTYVRSLC 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+G +LGCGAH+ +L R + + VTLE L+ + +L+ ++ M Sbjct: 181 HDMGSRLGCGAHMSFLVRTRAGPFKIADSVTLEELQAAASKG---------VLERKIIEM 231 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL-------EGLVRVTEGENGKFIGMGEI 297 D S+YP V + ++ G+ + G LVR+T + + + E Sbjct: 232 DRAVSEYPEVIVKSSAVKAVAAGSKLYIPGVARMPLDLDCGKLVRLTGPDG--LLAIAEA 289 Query: 298 DDE 300 E Sbjct: 290 GRE 292 >UniRef50_B8CW75 tRNA pseudouridine 55 synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW75_HALOH Length = 303 Score = 310 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 165/297 (55%), Gaps = 22/297 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ + KP GM+S D + ++++Y+ +AGHTG LDP A+G+LP+CLG+ TK YL Sbjct: 4 VDGIISIIKPPGMTSFDVVAWIRKMYSVKKAGHTGTLDPAASGVLPVCLGKGTKIIPYLP 63 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 D K Y LG +TDT D++GQI+EE + + L + F+G IEQ+P MYSA Sbjct: 64 DEVKGYVAEITLGVKTDTLDSEGQIIEENQKWESITDSHLNKVISDFQGVIEQVPPMYSA 123 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +KY+GK+LYE AR+G ++ RE R + + ++ + + +++L + CS GTYIR+I D+G Sbjct: 124 VKYKGKRLYELAREGKKIKREPRQVEIKKINILDIDLPKVKLFVLCSPGTYIRSIARDIG 183 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 EKLGCGA++ +L R + +E TL ++ D LL D P Sbjct: 184 EKLGCGAYLSFLVRTRSGSFNLENSFTLSEIK--------------FRGDKLLYNFDYPL 229 Query: 249 S-DYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTEG----ENGKFIGMGEIDD 299 + + +++ S NG P+ S G V + + N F+ + + D Sbjct: 230 TNHFTRIDIRRGSRQKVYNGAPLYGSDIAKIYGKVTLRDKVLIYNNNTFLAIYRVSD 286 >UniRef50_A4J5W9 tRNA pseudouridine synthase B n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5W9_DESRM Length = 310 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 98/320 (30%), Positives = 174/320 (54%), Gaps = 31/320 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+ + KP GM+S+D + V+R+ + GHTG LDP A+G+LP+C+G+AT+ ++++ Sbjct: 1 MDGVINILKPPGMTSHDVVFFVRRVTGVKKCGHTGTLDPGASGVLPVCVGKATRLARFVT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 D DK YR LG T + DA G ++ + + ++ L F+G+I+Q P M SA+ Sbjct: 61 DGDKTYRAEITLGIETSSQDAFGNVISRIDASAIKLDDFSSELRKFQGEIKQTPPMASAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYEL-----LFIRHEGNELELEIHCSKGTYIRTII 184 K +GKKLYE R+GI V R +T+Y++ + ++ CSKGTY+RT+ Sbjct: 121 KVKGKKLYELEREGIIVDVPTRTVTIYQVNIVDSWDWGTPNPRVLFDVACSKGTYVRTLC 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+G++LGCGA++ +L R V+ + + TLE + L ++++ L+ ++PM Sbjct: 181 SDIGKELGCGAYMSFLLRSRVAAFGLHNAYTLEEIAALADKSQ---------LESAVIPM 231 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL-------EGLVRVTEGENGKFIGMGE- 296 P+V + ++ +G + +G + EGLV+V N + +G+ + Sbjct: 232 AKAVQHLPIVEIHPSAQKSVCSGATLYPAGVRVGLEYLKPEGLVQVQL--NHELLGIYKP 289 Query: 297 ---IDDEG---RVAPRRLVV 310 ++D G + P + Sbjct: 290 VLDVNDFGERIILRPEVVFA 309 >UniRef50_Q2RMR8 tRNA pseudouridine synthase B n=11 Tax=Alphaproteobacteria RepID=TRUB_RHORT Length = 308 Score = 310 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 110/317 (34%), Positives = 171/317 (53%), Gaps = 19/317 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSR RRRG+ I+G L +DKP G++S D + +++R +A + GH G LDPLA+G+LPI G Sbjct: 1 MSR-RRRGQAIHGWLAIDKPVGITSTDVVNRLRRTMDAAKVGHGGTLDPLASGVLPIAFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK Y++D K Y ++ G+ DT D +G++++ V A+ + A L F G+IE Sbjct: 60 EATKTVSYVMDGTKVYHMVVGWGEARDTDDREGKVIDTSDVRPDAQAITAMLARFTGEIE 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL-ELEIHCSKGTY 179 Q+P +YSA+K +G++ Y+ AR V ++R I + +L + + I KG Y Sbjct: 120 QVPPIYSAVKVEGRRSYDLARADQAVELKSRKILIKDLTLLETSTPDFGHFRIVSGKGAY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R++ DL LG HV+ LRRLA + E ++L+ + L A + Sbjct: 180 MRSLARDLALALGTVGHVVALRRLACGPFTAETAISLDMVDALGHDAPHSE--------- 230 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT----SGAPLEGLVR---VTEGENGKFI 292 L+P+++ +D P V L + G PV S PL GL + V NGK + Sbjct: 231 SLLPIEAALADIPAVPLTEAEARRLSQGQPVSLLHLASRTPLNGLAQGETVQALLNGKLV 290 Query: 293 GMGEIDDEGRVAPRRLV 309 + +I EG + P R+V Sbjct: 291 ALAKIV-EGEIRPLRVV 306 >UniRef50_Q01SZ5 tRNA pseudouridine synthase B n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=TRUB_SOLUE Length = 293 Score = 309 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 106/299 (35%), Positives = 159/299 (53%), Gaps = 14/299 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+++DKP+G +S+D + KV+RI + GH G LDP+ATG+LP+ + AT+ +Q+ Sbjct: 1 MDGVIVIDKPEGWTSHDVVNKVRRIAKTKKVGHLGTLDPIATGVLPLVIERATRLAQFYT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 S+K Y + R G T + D G+ E+ V +AEQL AL+ FRG+ Q P SA Sbjct: 61 RSEKIYEGLVRFGWSTSSYDRAGEPTSEKVEVQLTAEQLEHALENFRGEFLQRPPAVSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K +GK+ YE AR+ + V E + VYEL + EGN L HCS GTY+R+I DLG+ Sbjct: 121 KVEGKRSYELARKNMAVELEPVKVHVYELTLLALEGNLARLRAHCSGGTYMRSIAHDLGQ 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LGCGAH+ LRRLA ++ +++ TLE L L + D ++P Sbjct: 181 ALGCGAHLQELRRLASGEFELDQARTLEQLESLAAEDRLPDA---------IVPAGKLLP 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGA---PLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 +P V + ++ +NG S P V+ G + +GE+ P Sbjct: 232 AFPSVFVDEITAAQIRNGRDFPASPFRSQPASKYVKAVT-RTGDLVAIGEVVLPNLYHP 289 >UniRef50_A1AMM4 tRNA pseudouridine synthase B n=2 Tax=Desulfuromonadales RepID=A1AMM4_PELPD Length = 304 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 107/295 (36%), Positives = 161/295 (54%), Gaps = 16/295 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+G ++DKP G+SS+D + +V+RI R GHTG LDP ATG+LP+ + +ATK +L Sbjct: 2 ISGFFVIDKPAGISSHDVVSRVRRILGTRRVGHTGTLDPFATGVLPVAVNDATKVIPFLD 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y+ + RLG TDT D G+I+ E + S E+ L F G I Q+P M+SA+ Sbjct: 62 EGVKCYQALLRLGVVTDTLDMTGRILAEGDYSSVSRERFLELLTRFCGVISQVPPMFSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G+ LY+ ARQGIEV R AR + ++ L + E L + CS+GTY+R++ DDLG Sbjct: 122 KRDGQPLYKLARQGIEVERRARQVEIHSLELLSFEPPLACLRVSCSRGTYVRSLADDLGA 181 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LGCGA + LRR+A + + +TL L EQA++ + A LDP + + Sbjct: 182 ELGCGASLQELRRIASGPFHLSSAITLATL----EQAKEGGMSDALCLDPY-----AALA 232 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 P + L ++G +P G ++ G G+ + G +A Sbjct: 233 HLPDIPLSDAGLAKVRHGR------SPEWGETLLSAPCEGTEAGLARLSRNGSLA 281 >UniRef50_D0LZ86 tRNA pseudouridine synthase B n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZ86_HALO1 Length = 371 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 154/303 (50%), Gaps = 25/303 (8%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++GVL++DKP G++S + +VKR R GHTG LDP+ATG+LP+CLGEATK + Sbjct: 28 NKSALHGVLVVDKPAGITSAAVVARVKRHLGVRRVGHTGTLDPMATGVLPLCLGEATKIA 87 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ---LAAALDTFRGDIEQIP 123 YLL DK Y LG TDT DA+GQ+ P +A L L TF G EQ+P Sbjct: 88 GYLLAEDKGYEAELLLGVETDTLDAEGQVTARAPEAAAAVDEAALRRVLATFVGPGEQVP 147 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 M+SALK GK+L+E AR G EV R RP+ ++ELL +HCSKGTY+R++ Sbjct: 148 PMFSALKRGGKRLHELARAGQEVERPPRPVVIHELLLHAFATPRARFSVHCSKGTYVRSL 207 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DD+G LGCGAH+ LRR + + + + L + + E+A L+ Sbjct: 208 ADDIGRALGCGAHLSALRRTRSGAFAIAQAIPLAAIEDDPERAR-----------AALVS 256 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPV----------RTSGAPLEGLVRVTEGENGKFIG 293 + P V +P G P+ + + VR+ G+ + Sbjct: 257 PAVAVAHLPAVAIPSEGVHDIACGKPMSWQRLSLLAPEAAAIACDAPVRLLLPS-GELVA 315 Query: 294 MGE 296 + E Sbjct: 316 LAE 318 >UniRef50_Q3BRP7 tRNA pseudouridine synthase B n=20 Tax=Xanthomonadaceae RepID=TRUB_XANC5 Length = 308 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 129/308 (41%), Positives = 179/308 (58%), Gaps = 11/308 (3%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +PR R ++G+LLLDKP G+SSN+ALQ +R+ A + GHTG+LDPLATG+LP+C GEA Sbjct: 2 KPRIVYRPLHGILLLDKPAGLSSNNALQAARRLLRAEKGGHTGSLDPLATGLLPLCFGEA 61 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQ 121 TK + LL S K Y LG TDT DADGQ + ER V S L AAL F G I+Q Sbjct: 62 TKIAGLLLGSAKAYDAEIVLGVTTDTDDADGQPLRERAVPDLSEADLQAALAPFIGRIQQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 +YSALK G+ LY AR+G + R + V + + + L L + C GTYIR Sbjct: 122 QAPIYSALKQGGEPLYAKARRGERIEAPVREVDVQAIDVLGYSAPGLRLRVTCGSGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 ++ DLGE LGCGAH+ LRRL V + +M+TLE L +E + LL Sbjct: 182 SLARDLGEVLGCGAHIASLRRLWVEPFRAPQMITLEALSAALEAGTEA--------RTLL 233 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 +P+++ + + + L T + F+ G +R + P G V V G +G G+G +D +G Sbjct: 234 LPIEAGLAGFARIVLDQTHAARFRMGQRLRDAAFP-PGQVAVF-GPDGTPSGLGLVDADG 291 Query: 302 RVAPRRLV 309 R++P+RL Sbjct: 292 RLSPQRLF 299 >UniRef50_B2A3A0 tRNA pseudouridine synthase B n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3A0_NATTJ Length = 299 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 168/310 (54%), Gaps = 21/310 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L + K G +S+D +Q +++ Y + GH G LDP A G+LP+ LG+AT+FSQY+L Sbjct: 1 MLGFLTVCKTPGYTSHDVVQYLRKNYQVKKVGHLGTLDPGAVGVLPLALGKATRFSQYIL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFS-AEQLAAALDTFRGDIEQIPSMYSAL 129 DK+YR LG+ TDT DA G+ +E+ V + E L G+I Q+P MYSA+ Sbjct: 61 SQDKKYRFELTLGEATDTLDAQGKTIEKDEVQNTHIENLKNKYQELIGNINQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYEL----LFIRHEGNELELEIHCSKGTYIRTIID 185 K +GKKLYE AR+G EV R R +T++ L ++ + ++HCSKGTYIRT+ + Sbjct: 121 KQKGKKLYELAREGKEVERTPRQVTIHSLNLVDIYEHQGKHRFLFDVHCSKGTYIRTLAE 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DL + G ++ +L R A + ++ + + L E L L P+D Sbjct: 181 DLAKLSGTVGYMSFLIRTATGIFNLDDAIFPQELPE-----------QKTDLGIHLFPVD 229 Query: 246 SPASDYPVVNLPLT-SSVYFKNGNPVRTSGAPLEG-LVRVTEGE---NGKFIGMGEIDDE 300 P SD P + L + FKNGN V T+ G L R+ E + + F+G+G+I Sbjct: 230 YPLSDIPSLVLKESQQLKRFKNGNFVNTAVIAESGELYRIYEEDSSGDNLFLGLGKITSS 289 Query: 301 GRVAPRRLVV 310 + P +++ Sbjct: 290 NTLKPEKIIA 299 >UniRef50_A5GF89 tRNA pseudouridine synthase B n=7 Tax=Geobacter RepID=TRUB_GEOUR Length = 310 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 152/303 (50%), Gaps = 20/303 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G +++DK GM+S+D + V+RI + GHTG LDP ATG+LP+ LGEATK +L Sbjct: 1 MDGFIVVDKSAGMTSHDVVSAVRRIAGQKKVGHTGTLDPFATGVLPVALGEATKAIPFLD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 +S K YR + +LG TDT D G+++ E + + L F G + Q+P M+SAL Sbjct: 61 ESIKEYRAVMKLGVATDTQDYTGKVLHESDWSHVTTSALNEICRMFVGKLSQVPPMFSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G LY+ ARQG EVPR+ R I +Y L+ E+ + CS+GTY+RT+ +D+G Sbjct: 121 KQNGVPLYKLARQGAEVPRQPREIEIYSLVIEAVNLPEVAFTVRCSRGTYVRTLANDIGG 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCGAH++ L R + + +TL+ ++ + L+ + S Sbjct: 181 KLGCGAHLLQLHRSLSGPFSINNAITLDDWARRMQDGRAGET---------LVSPFAALS 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPL--------EGLVRVTEGENGKFIGMGEIDDEG 301 L + NG + + LVR++ G G + + + G Sbjct: 232 HLKDFILTGKGAAKVANGVVPALEDFQVLSECELLRDELVRMSFG--GTLLAVAKAGLPG 289 Query: 302 RVA 304 Sbjct: 290 DWK 292 >UniRef50_A9IMS8 tRNA pseudouridine synthase B n=3 Tax=Bartonella RepID=TRUB_BART1 Length = 320 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 104/321 (32%), Positives = 165/321 (51%), Gaps = 15/321 (4%) Query: 1 MSRPRRR-GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R R++ GR ++G ++ DKP+GM S +A+ K+K +++A +AGH G LDPLA+G+LPI L Sbjct: 1 MARQRKKKGRPVSGWVVFDKPKGMKSTEAVSKIKWLFHAQKAGHAGTLDPLASGLLPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 GEATK Y++ K YR GQ T D +G+I + + E++ A L + G I Sbjct: 61 GEATKTVPYVMQGKKTYRFHIAWGQERSTDDLEGEITKTSLKRPTQEEILALLPQYTGII 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL-ELEIHCSKGT 178 Q P +SA+K G + Y+ AR+G + R + + + E EI C KGT Sbjct: 121 LQTPPQFSAIKIAGNRAYDLAREGEVIEIPPREVEIETFKLVETPTKEHSVFEITCGKGT 180 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELV-------EQAEQQDI 231 Y+R++ D+G LGC H+ LRR+AV+ + E +VT + L+ + ++ E Sbjct: 181 YVRSLARDMGRDLGCYGHIADLRRIAVAPFCEEDLVTWDELKAAISPNKNTTDENENSFE 240 Query: 232 PAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL---EGLVRVTEGEN 288 LD LL+ + P L T + G+ + S E V V E Sbjct: 241 KDFLTLDELLIETGAALDCLPHYPLTDTQAQRVMRGHSIPLSAQKTLLDEEEVCVLYKE- 299 Query: 289 GKFIGMGEIDDEGRVAPRRLV 309 + + +G + D+G P+R+ Sbjct: 300 -QLLAIGTL-DKGLFKPKRIF 318 >UniRef50_A6GNL1 tRNA pseudouridine synthase B n=2 Tax=Burkholderiaceae RepID=A6GNL1_9BURK Length = 344 Score = 307 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 125/340 (36%), Positives = 190/340 (55%), Gaps = 36/340 (10%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 ++ +++ R ++GVLL DK G SSN ALQ VKR+Y A + GHTG LDPLA+G+LP+ G Sbjct: 6 VAETKKQKRALSGVLLFDKSTGFSSNQALQIVKRLYRAEKTGHTGTLDPLASGLLPLMFG 65 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVE---ERPVTFSAEQLAAALDTFRG 117 EATKF+ L+D+ K YR RLG ++T DA+G++ + + + +++ + F G Sbjct: 66 EATKFAADLIDASKTYRTKVRLGFSSNTGDAEGELTKVGNRALESITEDEVKQVCEQFVG 125 Query: 118 DIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN--------ELE 169 +I+Q+P M+SALK GK LYEYAR+GIE+ R AR + +++L I+ E N +E Sbjct: 126 EIQQVPPMFSALKKDGKPLYEYAREGIELDRPARTLLIHQLDVIKVEHNTNHGESSCTIE 185 Query: 170 LEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 LE++CSKGTY+RT+ +D+ + LG ++ LRR A+ VER TLE L+ L E Sbjct: 186 LEVNCSKGTYVRTLGEDIAKALGTAGYLTELRRTAIGDLKVERAYTLEALKVLGESE--- 242 Query: 230 DIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS-GAPLEGLVRVT---- 284 + LD +L P+D+ V L + F +G + G VRV Sbjct: 243 --TPFDALDAVLFPVDALLGSLGKVELNNEFARRFSHGQRLPLELADAKPGRVRVYGEAP 300 Query: 285 ------------EGENGKFIGMGEIDDEGR---VAPRRLV 309 N +F+G G ++ +G+ + P RL+ Sbjct: 301 AQDVNTEVSNTAFKGNSRFMGTGILETDGKGALLRPDRLI 340 >UniRef50_UPI0001C373A4 tRNA pseudouridine synthase B n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373A4 Length = 297 Score = 306 bits (784), Expect = 8e-82, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 157/298 (52%), Gaps = 14/298 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L ++KPQ +S D + K++ I R GH G LDP+ATG+LP+ +G ATK + Sbjct: 1 MNGILCVNKPQDFTSFDVVAKLRGILKMKRLGHGGTLDPMATGVLPVFVGNATKAVDIMP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y RLG +DT D G + S +++ A L FRG+I QIP MYSA++ Sbjct: 61 VTLKSYTADFRLGFTSDTQDVWGNAEKVSDKAVSPDEIEAVLPQFRGNIMQIPPMYSAVQ 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--NELELEIHCSKGTYIRTIIDDLG 188 G++LY+ AR+GIEV R+ R ++ L + ++ E LEI CS+GTY+RTII+D+G Sbjct: 121 VNGQRLYDLARKGIEVERQPRETEIHTLNMLSYDPVTREGVLEIECSQGTYVRTIINDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 EKLG G + L R + + + T + +++ ++ + L++P++ Sbjct: 181 EKLGVGGIMTGLVRNSACGFALSECHTFDEIQKAADEGRVGE---------LILPIERVF 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPV---RTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 P + L + ++NG + R + G +G FIG D E + Sbjct: 232 DTLPKLRLGEAQTRMYRNGVKLDLERIRNIREDADCYAVYGSDGGFIGTALTDRENGI 289 >UniRef50_C0QUQ5 tRNA pseudouridine synthase B n=5 Tax=Aquificales RepID=C0QUQ5_PERMH Length = 293 Score = 305 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 94/305 (30%), Positives = 171/305 (56%), Gaps = 17/305 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYN-----ANRAGHTGALDPLATGMLPICLGEATKF 65 ++G+LL+DKP+ ++SN +QK+K+ + + GHTG LD A+G++ I +G+AT+ Sbjct: 1 MDGILLVDKPENITSNHLVQKIKKHFKQITGKEIKVGHTGTLDYFASGLMVITVGKATRL 60 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 ++Y DK Y LG+ TDT D G+++EE+ +QL + +F+ Q P Sbjct: 61 TEYFQGLDKEYIATGELGKITDTYDRQGRVIEEKECKIDEDQLKDIILSFKKRYLQTPPP 120 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YS+ + +GK+ Y+ A++GI+V + + +T+Y + ++ E +++HCS GTYIR+++ Sbjct: 121 YSSKRIEGKRAYQLAKKGIQVKLKPKEVTIYSIQILKIEMPFFTIKVHCSSGTYIRSLVK 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 ++G+K GCGA+V LRR V + VE + LE L + EQ ++ L+ + Sbjct: 181 EIGDKAGCGAYVKSLRRTKVGIFSVENAIKLEELLRMTEQD----------IESRLIDIK 230 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + L F G + ++GLV+V + +N +F+G+GEI + + P Sbjct: 231 DALYFFTEILLDPVFDERFIKGQRFKVP-YSIKGLVKVLD-KNKRFLGIGEIKENQILQP 288 Query: 306 RRLVV 310 ++ + Sbjct: 289 VKVFI 293 >UniRef50_B4WM04 tRNA pseudouridine synthase B, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WM04_9SYNE Length = 322 Score = 305 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 100/329 (30%), Positives = 160/329 (48%), Gaps = 42/329 (12%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+G + L+KP G +S+D + + +++ + GH G LDPLATG+LP+ +G AT+ QYL Sbjct: 2 IHGFINLNKPVGWTSHDCVARTRKLLGTKKIGHGGTLDPLATGVLPLAVGRATRLLQYLP 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K YR + R G T T D +G I +++ T + AAL F G IEQ+P MYSA+ Sbjct: 62 EG-KAYRAVIRFGVITTTDDLEGNIAKQQDATELEEAAVDAALSQFIGKIEQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---NELELEIHCSKGTYIRTIIDD 186 + +G++LY+ AR G V R +T+ L+ + EL ++I C GTYIR++ D Sbjct: 121 QVEGRRLYDLARAGKAVEVPKRVVTIEHLVSQSWKPGVQPELTVDIKCGAGTYIRSLARD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LGE +G GA + L R S + + +TLE+L + + Q + A + Sbjct: 181 LGEAVGTGATLAGLTRTYSSGFKLTDSLTLENLEKAIAQNTFAPVSAGK----------- 229 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEG---------LVRVTEGENGKFIGMGE 296 + LP + ++ G + +G P+ VR+ E F+G+GE Sbjct: 230 AMEHLAAITLPPDLARRWQLGQKLEITAGIPIPQPIGDHANYPPVRILEATTQTFLGIGE 289 Query: 297 IDD----------------EGRVAPRRLV 309 I + P+R+ Sbjct: 290 IRSLPFDPLPSDPLSVECATKILVPKRVF 318 >UniRef50_Q2KXZ0 tRNA pseudouridine synthase B n=2 Tax=Proteobacteria RepID=TRUB_BORA1 Length = 244 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 113/242 (46%), Positives = 153/242 (63%), Gaps = 5/242 (2%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +RRG+ ++GVLLLDKP G+SSN ALQ+ KR +A +AGHTG LDP ATG+L C+G ATK Sbjct: 3 KRRGQPLDGVLLLDKPVGLSSNHALQRAKRTLDAAKAGHTGTLDPFATGLLLCCMGRATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFS---AEQLAAALDTFRGDIEQ 121 S +L++DK YR + G+ TD+ D G IV P F L L F+G IEQ Sbjct: 63 ISGAMLNADKTYRATLQFGEETDSGDLTGNIVARAPEDFPGVEEANLREVLSRFQGSIEQ 122 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 IP MYSALK GK LYEYAR GIE+ R R + +Y + + G++ E+++ CSKGTYIR Sbjct: 123 IPPMYSALKRDGKPLYEYARAGIELERPPRRVMIYRIELLSFTGHQAEIDVACSKGTYIR 182 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G LGC AH+ LRR V + ++R VTL+ L+ + + + + A L L Sbjct: 183 TLAQDIGRALGCYAHLFALRRTQVGPFSLDRAVTLDALQAMTD--PKAALLALNELPAGL 240 Query: 242 MP 243 +P Sbjct: 241 LP 242 >UniRef50_Q67P83 tRNA pseudouridine synthase B n=3 Tax=Bacteria RepID=TRUB_SYMTH Length = 299 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 99/284 (34%), Positives = 144/284 (50%), Gaps = 20/284 (7%) Query: 1 MSR-PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R +++GVL L KP GM+S+D + V+R +AGHTG LDP G+LP+C+ Sbjct: 1 MARAQNEAASEVDGVLNLLKPPGMTSHDVVAFVRRALGVKKAGHTGTLDPGVAGVLPVCV 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGD 118 G AT+ ++Y+ SDK YR G TDT D G++V E + +A AL F G Sbjct: 61 GRATRLAEYIAGSDKAYRAEITFGVATDTQDGFGEVVAEADASHLTRGDVAYALTRFHGP 120 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---NELELEIHCS 175 IEQ+P M SA+K GK+LYE AR+G+EV RE R + ++ L + +++ CS Sbjct: 121 IEQVPPMVSAVKVGGKRLYELARKGVEVEREPRRVFIHRLQLLDFRPGPRPVAYIDVVCS 180 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 KGTY+RT+ DLG L GAH+ YL R + + + TLE L Sbjct: 181 KGTYVRTLAHDLGRFLQVGAHLSYLVRTRSGPFVLAQAATLEELAA-------------- 226 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG 279 L+P + D P V + ++ +G +G Sbjct: 227 -GKARLLPPAAALGDMPRVTVSGRAAARVLHGVAPAVRVEHPDG 269 >UniRef50_C2KV13 tRNA pseudouridine 55 synthase n=6 Tax=Bacteria RepID=C2KV13_9FIRM Length = 531 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 87/219 (39%), Positives = 135/219 (61%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ ++K +GM+S D L+ ++RI + GHTG LDP+A G+L +C+G+ATK+ L+ Sbjct: 1 MDGIINVNKEKGMTSFDVLRALRRILREKKMGHTGTLDPMAEGVLLVCVGKATKYVDALM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y+ LG TDT D+ G+I+ E V+ S E + L F G EQIP MYSA K Sbjct: 61 AKEKIYQAELTLGIETDTEDSTGKILSEEEVSISKEDIEKILPRFLGKQEQIPPMYSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +GKKLYE AR+G V R+ I ++ L + ++ +L IHCSKGTYIRT+ D+GE Sbjct: 121 LEGKKLYELAREGKTVERKPSQIEIFALEILSYDCPKLRFRIHCSKGTYIRTLCKDIGEA 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 LG A + L R V ++ ++ +L + +L + ++ Sbjct: 181 LGTKACMSALLREQVGEFSLKNSFSLSEIEKLEGEGKRD 219 >UniRef50_D2RKW1 tRNA pseudouridine synthase B n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKW1_ACIFE Length = 297 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 17/300 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ + KP GM+S+D + +++I + + GH G LDPLA G+LP+ G AT+F +Y Sbjct: 1 MDGIFNVLKPPGMTSHDVVGALRKILHMKKIGHGGTLDPLAAGVLPVFTGMATRFLEYAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +K YR G +TDT D +G ++ E PV +AE++ AAL +FRG+ QIP MYSA+ Sbjct: 61 HEEKSYRAELTFGFQTDTGDTEGAVIAESPVRDLTAEEIEAALASFRGEGTQIPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G KLY+ ARQGIEV RE RPIT+YEL + + G L ++ CSKGT+IRT+ +DL Sbjct: 121 SVGGTKLYKLARQGIEVKREPRPITLYELEKVDYTGKTLVFDVTCSKGTFIRTLCEDLAA 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG + +L R + +E TL+ + E M ++ + Sbjct: 181 KLGMKGTMSFLLRRRAGVFRLEDAHTLQEIAADPEG--------------CCMGVEPILA 226 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 +P + G G L ++ +G +G+ D GR+ +++ Sbjct: 227 GFPKKIVNALQGRRIAQGVATTLPGLTEGTLYQLWT-RDGVLVGLARAVD-GRLRAHKII 284 >UniRef50_Q2RJM2 tRNA pseudouridine synthase B n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=TRUB_MOOTA Length = 305 Score = 303 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 102/312 (32%), Positives = 166/312 (53%), Gaps = 26/312 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G + + KP G++S+D +Q ++R+ R GH G LDPLA G+LP+ +G AT+ +YL Sbjct: 4 GFVNVLKPPGLTSHDVVQNLRRLLKVKRIGHGGTLDPLAAGVLPVAVGTATRLLEYLQGG 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK YR LG +TDT D G+++ +P F+ + L AA F G I Q+P M SA+ Y Sbjct: 64 DKAYRAEFILGLKTDTQDLGGRVLARKPCPPFTEKDLQAATRPFTGTIRQVPPMVSAVHY 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGN----ELELEIHCSKGTYIRTIIDDL 187 QG++LYE AR+G+EV R AR +T++E IR + ++I CS+GTYIRT+ D Sbjct: 124 QGRRLYELAREGLEVERPARQVTIHEFRLIRAWPDGPYYRALIDITCSRGTYIRTLGADW 183 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+ LG GA + +L R + + TLE + +++ E L+P + Sbjct: 184 GDYLGVGATLAFLLRTRAGSFRLTDAWTLEEIAGAIDRGE----------RTFLLPPAAG 233 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVR------TSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 + PV+ +P + NG ++ +VR+ GE G+ + + ++ + Sbjct: 234 LAHLPVIIVPGEFIRHVSNGVAIKGDVCRPLPSLREGDIVRLETGE-GQLLALARVEPDT 292 Query: 302 R----VAPRRLV 309 R + P +++ Sbjct: 293 RGSFLLKPHKVL 304 >UniRef50_A5VJE2 tRNA pseudouridine synthase B n=18 Tax=Lactobacillus RepID=TRUB_LACRD Length = 301 Score = 303 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 99/309 (32%), Positives = 161/309 (52%), Gaps = 19/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ L K +GM+S + ++++I + GH+G LDP G+LPIC+G ATK YL+ Sbjct: 1 MDGIIPLYKERGMTSFACVSRLRQILKTKKIGHSGTLDPGVAGVLPICVGNATKVVDYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 S K+Y+ +G T T D DG +EE+ V ++ +A+++ G I QIP MYSA Sbjct: 61 QSGKQYQGELLIGFATTTQDLDGDKIEEKVVADEIPTSEILSAMNSLTGTIIQIPPMYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITV--YELLFIRHEG----NELELEIHCSKGTYIRT 182 +K GKKLYEYAR G V R R +T+ +ELL +++ + + CSKGTYIRT Sbjct: 121 VKVNGKKLYEYARAGETVERPKRQVTISKFELLSSKYDKKNKQQRIRFNVECSKGTYIRT 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 ++ DL KLG + L RL + +++ ++L+ +R+ V A + L L Sbjct: 181 LVVDLARKLGYPGVMSLLTRLKSGGFTLDQTLSLDDVRDAV---------ATQTLQQYLY 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 P+D DYP + + + +NG + S V +G+ + D + + Sbjct: 232 PLDYALKDYPQLTIQVAQWKKVQNGGWLSPSELNTSEKEIVLSF-DGQVKALYHFDPKNK 290 Query: 303 -VAPRRLVV 310 P ++ Sbjct: 291 MYKPTKMFA 299 >UniRef50_C9R8X3 tRNA pseudouridine synthase B n=1 Tax=Ammonifex degensii KC4 RepID=C9R8X3_AMMDK Length = 303 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 92/270 (34%), Positives = 147/270 (54%), Gaps = 14/270 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + GVL + KP GM+S+D + ++R+ + GH G LDP A G++ + +G+AT+ +Q+L+ Sbjct: 1 MIGVLNVLKPPGMTSHDVVDWLRRLTGEKKVGHAGTLDPDACGVMVLLIGKATRAAQFLV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK YR A G RTDT D G+++ + + + E +A L F G I Q P M+SA+ Sbjct: 61 TEDKEYRAEAVFGVRTDTLDLSGRVLACQDASWLTPEAVAEVLPQFTGSIWQKPPMFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE----GNELELEIHCSKGTYIRTIID 185 +Y+GK+L+E AR G EV R + VY L ++ + + L +HC KGTY+R+++ Sbjct: 121 RYKGKRLHELARAGQEVEVPPRRVEVYSLQLLKGDWGKRHPRVWLHVHCGKGTYVRSLVA 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DLGE LG GA + +L R V ++ + TLE L L E+ + L L+P+ Sbjct: 181 DLGEALGTGACLGFLLRTRVGRFGIGEAYTLEELARLKEEGK---------LAKALIPLA 231 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGA 275 P + + + KNG + + Sbjct: 232 EALGHLPAIEVGEEGAKRIKNGGFLSPAHC 261 >UniRef50_Q1G9Q1 tRNA pseudouridine synthase B n=27 Tax=Lactobacillus RepID=TRUB_LACDA Length = 298 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 106/307 (34%), Positives = 163/307 (53%), Gaps = 24/307 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG++++DK GM+S D + K++R+ + GH G LDP TG+LPI LG+ATK + + + Sbjct: 3 NGIIVIDKAAGMTSGDVVYKLRRLLKQKKIGHAGTLDPEVTGVLPIALGQATKLIELMHE 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TD+ D +G+I+ ER + S + + AA++ G+I Q P +YSA+ Sbjct: 63 RPKAYVGEGMLGLATDSYDLEGKILAERALSQPVSDQAIKAAMEKLIGEIVQQPPIYSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITV--YELLFIRHEGNE-----LELEIHCSKGTYIRT 182 + GK+LYEYAR+GI V R R + V Y+L E E+ CSKGTY+R+ Sbjct: 123 RVNGKRLYEYAREGIPVERPKRTVQVFLYDLTAPSQFDPEKGRQTFTYEVECSKGTYVRS 182 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 +++DLGE+LG A + LRR A S Y ++ VTLE L + ++ AE + Sbjct: 183 LVNDLGEELGLPAVMTKLRRTASSGYKLQDAVTLEELADNLDHAE-----------DYIQ 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 P+DS +DY V+L KNG ++ + +R N + +G Sbjct: 232 PIDSFFADYQQVDLDAALWQQVKNGAWIKLPLDADKVALR----YNKTVKAIYRAKGQGL 287 Query: 303 VAPRRLV 309 P ++ Sbjct: 288 YCPDLML 294 >UniRef50_Q1IPJ6 tRNA pseudouridine synthase B n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IPJ6_ACIBL Length = 302 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 95/304 (31%), Positives = 158/304 (51%), Gaps = 13/304 (4%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++ VL++DKP G +S+D + +++R+ + AGH G LDP+ATG+LP+ LG T+ SQ+ Sbjct: 2 PLDAVLVIDKPAGWTSHDVVARLRRVLSERSAGHLGTLDPMATGVLPVVLGRYTRLSQFY 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 S+K Y R G T+T DA+G+ V E + V + E + A F G + Q+P +SA Sbjct: 62 NHSEKSYEGEIRFGFATNTYDAEGETVGEAQTVQVALEGVREASREFVGPLSQLPPPFSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-LELEIHCSKGTYIRTIIDDL 187 K G Y+ AR+ +EV + I V++ + + H S GTYIR++ DL Sbjct: 122 KKINGVPAYKLARKNVEVELKPSAIEVFQFEVFEGSAPDRIGFRAHVSSGTYIRSLAHDL 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+KLGCGAH+ LRR V+++ +++ TLE + V + +++ ++P Sbjct: 182 GQKLGCGAHLASLRRTTVAEFTIDQAHTLEAVETAVAKGNPEELFVHP---RRILP---- 234 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P V + Y +NG V LV+V G+ + + + + G + + Sbjct: 235 --QLPCVTANDETVAYIRNGRAVNLPEFSKAKLVKVFAGQ-AEIVCVAQ-RIAGTLFHPK 290 Query: 308 LVVE 311 LV+ Sbjct: 291 LVMP 294 >UniRef50_A8SMZ3 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMZ3_9FIRM Length = 298 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 100/292 (34%), Positives = 148/292 (50%), Gaps = 15/292 (5%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 + NG+L + KP+G +S D + V++IY + GH G LDP ATG+LPI +G ATK +Y+ Sbjct: 2 NFNGILNVYKPKGFTSRDVVNIVRKIYKTKKIGHAGTLDPNATGVLPIAIGNATKIVEYI 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RGDIEQIPSMYSA 128 K Y LG TDT D G + + V Q + + I QIP MYSA Sbjct: 62 QSMGKCYVGEMTLGIETDTLDIWGGSLNSKEVYLDKNQFFEVIKEYDNKKISQIPPMYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK GK+LYEYAR GIEV RE R +Y L+ + N++ E++CSKGTYIR++ +D+ Sbjct: 122 LKKNGKRLYEYARLGIEVEREKREAEIYSLIILNFYDNKIRFEVNCSKGTYIRSLFNDIA 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 A++ L R + +E +LE L+ E L LM ++ Sbjct: 182 SDTDNFAYMSSLCRSKYGIFKIENAFSLERLKNFNEN----------QLYNSLMKIEDVF 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 +Y ++ + NG +T EG+ ++ + FIG+GE+ E Sbjct: 232 -EYERIDFDKKYFKHISNGLR-KTFDIEKEGIFKIYC--DNIFIGIGELVSE 279 >UniRef50_A8VS66 Pseudouridine synthase-like protein n=2 Tax=Bacillus RepID=A8VS66_9BACI Length = 317 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 153/309 (49%), Gaps = 22/309 (7%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L L KP+GM+S A++K I +AGHTG LDP G+LPIC+G ATK +YL + Sbjct: 13 GILPLWKPRGMTSFQAVRKAGGILKTKKAGHTGTLDPDVDGVLPICVGRATKIVEYLTAA 72 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y +G T+T DA G+ VE R F+ +++ L G+ +QIP MYSA+K Sbjct: 73 EKVYSGEVTIGWSTETEDASGETVETRMPEEAFTEQEVDDMLVQLTGEQKQIPPMYSAVK 132 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELL------FIRHEGNELELEIHCSKGTYIRTII 184 GK+LYEYAR+G+ V R R ITV+ L + HCSKGTYIRT+ Sbjct: 133 VNGKRLYEYAREGVSVTRPVRTITVHSLERTSPVYQHDNGSVSFTFTCHCSKGTYIRTLA 192 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +GEKLG AH+ L R A + E VT E + + ++ + +L+P+ Sbjct: 193 VTMGEKLGYPAHMSRLTRDASGSFSKEDCVTFEDMEKYADEQP----------EHILLPI 242 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG--LVRVTEGENGKFIGMGEID--DE 300 + P + + G + + V +G+ I + + D Sbjct: 243 EHAFEHVPSLTVEDDDLTRILQGGILPLPKQMDDPDIPFFVIFDPDGRLIALYKKDPKRH 302 Query: 301 GRVAPRRLV 309 G + P +++ Sbjct: 303 GMMRPEKMI 311 >UniRef50_Q1WUF2 tRNA pseudouridine synthase B n=28 Tax=Firmicutes RepID=TRUB_LACS1 Length = 302 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 161/309 (52%), Gaps = 20/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L L K +GM+SNDA+ K ++I+ + GH+G LDP G+LPIC+G+ATK YL+ Sbjct: 1 MDGILPLYKERGMTSNDAVIKCRKIFKTRKIGHSGTLDPEVDGVLPICVGKATKVVNYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 DS K Y+ LG T T D +G+++ + + FS E++ L +F GDI Q+P +YSA Sbjct: 61 DSGKVYKGEITLGFATTTEDLEGEVISKVKLSEPFSDEKINEILSSFIGDIIQVPPIYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITV---YELLFIRHEG----NELELEIHCSKGTYIR 181 +K GKKLYEYAR G +V R + + ++ + + + E+ C KGTY+R Sbjct: 121 IKVNGKKLYEYARAGEKVDIPERRVHIEYFKQIFPSKFDKEKGQQTIYFEVGCGKGTYVR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G+KLG A + L RL + + +L L +L + + L L Sbjct: 181 TLAVDVGKKLGVPAVMSDLTRLKSGGFQIGMAKSLSQLEKLAHENK---------LSESL 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE- 300 P+D D P +L L KNG + + E RV + + + + + E Sbjct: 232 YPIDYAVKDLPRYDLKLEQWRIVKNGGFLSVNTF-KEDYDRVNLFYDDRIRCIYQYNKEK 290 Query: 301 GRVAPRRLV 309 R R++ Sbjct: 291 NRYQSERMI 299 >UniRef50_C7RGP3 tRNA pseudouridine synthase B n=4 Tax=Anaerococcus RepID=C7RGP3_ANAPD Length = 298 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 103/285 (36%), Positives = 161/285 (56%), Gaps = 13/285 (4%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L +DK +G+SS + V+R N + GHTG LD A+G+LPI +G+AT+ S Y++D Sbjct: 3 SGILNVDKEKGISSARVVSLVRRGLNQKKVGHTGTLDLEASGVLPIVVGKATRVSDYMMD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y + G++TDT DA G++++E T E L L+ ++G+IEQIP MYSALK Sbjct: 63 KDKTYECLMEFGKKTDTLDAAGEVIKESSKTCKREDLEEVLEKYKGEIEQIPPMYSALKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GKKLY+ AR G E+ R+ R + +Y+L I + ++ + CSKGTYIRT++DD+GE L Sbjct: 123 DGKKLYDLARSGKEIERKKRKVKIYDLKLIDFDFPYAKISVTCSKGTYIRTLVDDIGEDL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 C + V LRR+ + + V+ V + E+ + L L +D + Sbjct: 183 ECLSFVKELRRVRIGDFLVDEAVKSSDILEM----------DKDKLISKLERVDKALDKF 232 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGE 296 P +L NG ++ + ++ VRV +FIG+ + Sbjct: 233 PRFDLADNLFDKAVNGMTIKI-DSKIDEEVRVY--SRNEFIGLAK 274 >UniRef50_UPI00016C5566 TruB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5566 Length = 286 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 155/299 (51%), Gaps = 18/299 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPICLGEATKFSQYL 69 +NG+L++DKP GM+S DA+ +V+R + + GHTG LDPLATG+L +C+G AT+ + Y+ Sbjct: 1 MNGLLVIDKPGGMTSRDAVNRVQRWFPKKTKIGHTGTLDPLATGVLVVCVGAATRLADYV 60 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y RLG + + DADG + + V + E + A+L F G IEQ+P SA Sbjct: 61 QAMGKTYASRFRLGATSTSDDADGTVTDTPGAVPPTGEAVEASLQRFVGVIEQLPPAVSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK G++ ++ RQG EV RP+ + + ++ ++E+ C KGTYIR+I DLG Sbjct: 121 LKVDGRRAHDLVRQGKEVTLAPRPVRIDAVRLTGYDWPFADVEVDCGKGTYIRSIARDLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCG V LRR V Y E VTL+ + LMPM S Sbjct: 181 AALGCGGMVQTLRRARVGCYLAEDAVTLD--------------LDPGEVGKHLMPMSSAL 226 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSG--APLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 S P V + F+ G V T+G +P G V + IG+G + G V P Sbjct: 227 STLPAVRISAEVVTRFRQGQTVATAGEASPQPGEEVVVIDGFQEVIGIGAVLPNGFVKP 285 >UniRef50_C6LME9 tRNA pseudouridine synthase B n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LME9_9FIRM Length = 332 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 96/267 (35%), Positives = 145/267 (54%), Gaps = 9/267 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ + K +G +S+D + K++ I + + GHTG LDP A G+LP+CLG AT+ L Sbjct: 2 INGIVNVYKEKGFTSHDVVAKLRGILHQKKIGHTGTLDPEAEGVLPVCLGNATRLCDMLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK YR + LGQ TDT D G ++ S E + +A+ F G EQ+P MYSALK Sbjct: 62 DKDKTYRAVLLLGQTTDTQDTTGTVLSTCAEIPSEEAVRSAVTGFIGPYEQVPPMYSALK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYE AR+G V R+AR + +Y + + + + + CSKGTYIRT+ D+GE+ Sbjct: 122 VGGKKLYELAREGKTVERQARTVQIYGITIEDIQLPRVTMTVSCSKGTYIRTLCHDIGER 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCG + L R V + + + L + +L L+ ++P+++ + Sbjct: 182 LGCGGCMEALLRTRVGAFVLADSLRLSEIEKLQSDGN---------LENSIVPVEAMFAQ 232 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPL 277 YP + + NGNP+ Sbjct: 233 YPALRTKAAADRLLYNGNPLEAQNLQK 259 >UniRef50_C1F2Z6 tRNA pseudouridine synthase B n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2Z6_ACIC5 Length = 313 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 98/304 (32%), Positives = 153/304 (50%), Gaps = 11/304 (3%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 R +NG+L++DKP G++S+D + +V+R GH G LDP+ATG+LP+ LG+ T+ + Sbjct: 19 EARQVNGLLIVDKPGGITSHDVVARVRRATGEKSIGHLGTLDPMATGVLPLLLGKFTRLA 78 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSM 125 QY S+K Y R G TDT DA+GQ E RP+T S E+L A F+G IEQ+P Sbjct: 79 QYFGSSEKSYTGTIRFGFATDTYDAEGQPSSEPRPLTHSLEELRALAARFQGQIEQMPPP 138 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA K G+ Y+ AR G A P+T++E + + + S G Y+R++ Sbjct: 139 FSAKKIGGQPAYKAARAGETPQLRAVPVTIHEFVLESLAEDTAAFRMQVSAGGYVRSVAH 198 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 +LG GCGAH+ LRR A + + + L+ + L AA+ L+ + Sbjct: 199 ELGAAAGCGAHLASLRRTAAGAFTLAEALPLDEIECLA---------AAKELEARMPHPR 249 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + P V L ++ +NG V +VR+ G+ I +G P Sbjct: 250 AILPEMPAVTTDLQTAGRLRNGMQVNLPDFSTAPMVRIFVGQRD-LIAIGRRVAGTLFQP 308 Query: 306 RRLV 309 ++ Sbjct: 309 VAVL 312 >UniRef50_A6C3H8 tRNA pseudouridine synthase B n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C3H8_9PLAN Length = 310 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 87/317 (27%), Positives = 147/317 (46%), Gaps = 20/317 (6%) Query: 5 RRRGRD--INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 ++ G D I+G+L ++KPQ ++S + +V+++ R GH G LDPLATG+L +C G Sbjct: 4 KKSGADLKISGLLNINKPQDITSRQVVDQVQKLIKPARVGHAGTLDPLATGVLVLCTGSN 63 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQ 121 T+ + + K Y LG+R+DT D G+I E + +L L F G I+Q Sbjct: 64 TRLIRLVQQQPKEYIGEFLLGKRSDTDDITGEISETADCRQVTLPELETCLPAFEGRIQQ 123 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 IP YSA+ G++ Y+ AR+G + R + VYE+ + +L I C GTYIR Sbjct: 124 IPPQYSAVHINGRRAYDLARRGKSFEIQPREVDVYEIELLDFSFPRFQLRIVCGSGTYIR 183 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 +I DLGE+LG GA + L R + + ++ + L+ L A+ + Sbjct: 184 SIGRDLGEQLGVGATMSALTRTRIGPFTLDSAMELDEELSLGTIADN------------I 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS----GAPLEGLVRVTEGENGKFIGMGEI 297 P P + + G ++ A E + + + + + Sbjct: 232 QPAILAVEQLPHYHCNERELLSLSQGQKLKCKPEYFPATHEIIEVAVISPQTELVAIADW 291 Query: 298 DDEG-RVAPRRLVVEYP 313 + E +++PR++ P Sbjct: 292 EPEAHQLSPRQVFHPAP 308 >UniRef50_A4A2R8 TRNA pseudouridine synthase B (Fragment) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2R8_9PLAN Length = 280 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 96/294 (32%), Positives = 147/294 (50%), Gaps = 15/294 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L + KP G +S DA+ +V R + GH G LDPLATG+L C+G T+ +YL Sbjct: 1 MHGILNIHKPPGWTSRDAVNRVNRFVRPAKVGHAGTLDPLATGVLICCVGSGTRLIEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 KRY LG+ +DT D +G + E SA QL A L F G+I Q PS +SA+ Sbjct: 61 QMPKRYVGQFELGKTSDTEDLEGVVTEIVDAPEISAAQLTAILPEFVGEILQRPSTFSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GK+ Y+ ARQG V RPIT+YE+ E E+++ C GTY+R + D+GE Sbjct: 121 KVDGKRAYKLARQGAAVELAPRPITIYEITLRGFEYPRFEIDVLCGGGTYMRALGRDIGE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LG GA + L+R A+ + +E + L+ L +AE + L P+ + S Sbjct: 181 RLGSGAVMTGLQRTAIGDFRLEDAIPLDEL-------------SAESVAENLSPLSTAVS 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 P + L +R + + + + G+ I + ++ R Sbjct: 228 QAPQITLTPEEVNEMIYARGIRATMESPAAEIAAMD-QQGRLIAILTRREDQRW 280 >UniRef50_A2RE90 tRNA pseudouridine synthase B n=24 Tax=Streptococcus RepID=TRUB_STRPG Length = 294 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 100/308 (32%), Positives = 156/308 (50%), Gaps = 23/308 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ L K GM+S+DA+ K++++ + GH G LDP G+LPI +G+AT+ +Y+ Sbjct: 2 INGIINLKKEAGMTSHDAVFKLRKLLQEKKIGHGGTLDPDVVGVLPIAVGKATRMIEYMT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 ++ K Y LG T T DA G++V P + E + + TF G I Q P MYSA Sbjct: 62 EAGKVYEGQVTLGYSTTTEDASGEVVARSSLPAVLTEELVDQTMTTFLGKITQTPPMYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITV------YELLFIRHEGNELELEIHCSKGTYIRT 182 +K G+KLYEYAR G V R R +T+ L F ++ CSKGTY+RT Sbjct: 122 VKVNGRKLYEYARAGESVERPRREVTISLFERTSPLNFTEDGLCRFSFKVACSKGTYVRT 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + DLG LG +H+ +L+R A + +E TL + ++V + E L+ Sbjct: 182 LAVDLGRALGVESHMSFLQRSASAGLTLETAYTLGEIADMVSKQEMS----------FLL 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 P++ +D P + + T G + E L+ GE K I + E D+ Sbjct: 232 PIEYGVADLPKMVIDDTELTEISFGRRLSLP--SQEPLLAAFHGE--KVIAILEKRDQ-E 286 Query: 303 VAPRRLVV 310 P+++++ Sbjct: 287 YKPKKVLI 294 >UniRef50_A7H9F6 tRNA pseudouridine synthase B n=4 Tax=Anaeromyxobacter RepID=A7H9F6_ANADF Length = 315 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 116/313 (37%), Positives = 161/313 (51%), Gaps = 28/313 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I GVL++DKP G +S D +Q+V+RI A RAGH G LDP ATG+L IC+G+A K QYL Sbjct: 3 IAGVLVVDKPAGPTSFDVVQRVRRILRAPRAGHAGTLDPAATGVLAICVGDAVKLQQYLS 62 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D+DK Y G TDT DA+G++VE P +AE+L A L FRGDI Q+P MYSA+ Sbjct: 63 DADKAYEATVAFGAATDTEDAEGRVVERGDPSRLTAEELRAVLPRFRGDISQVPPMYSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG-------------NELELEIHCSK 176 + G++L+E AR G V R R + V L + + C K Sbjct: 123 RVGGRRLHEAARAGESVERAPRQVRVDALELLELLPLEPPQDRVEAAPVRLARFTVRCGK 182 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTY+RT+ DLG LG AH+ LRR S + E VTLE L +A Sbjct: 183 GTYVRTLAADLGRALGVPAHLAALRRTEASGFRAEEAVTLEEAERLGREA---------- 232 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGE 296 L L+P+ +PV+ + + +G +R AP + R +G+ + + Sbjct: 233 LLARLVPLGDALRTFPVLEVSWAEARDLAHGRALRRELAPGKAAAR---APDGRLVAVCA 289 Query: 297 IDDEGRVAPRRLV 309 D G + P R++ Sbjct: 290 AGDRG-LCPERVL 301 >UniRef50_C4V3N1 tRNA pseudouridine 55 synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3N1_9FIRM Length = 290 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 102/302 (33%), Positives = 145/302 (48%), Gaps = 22/302 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + + KP GMSS+D + V+RI++ R GH G LDP A G+LPI LG A + +YL Sbjct: 1 MDGFINVLKPTGMSSHDVVDVVRRIFHQKRVGHAGTLDPAAAGILPIALGRAARLVEYLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVE--ERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 +DK YR G TDT D G + E E PV +AE++ A L FRG I Q P YSA Sbjct: 61 GADKSYRAEIAFGYATDTGDVYGMVTERSEHPVLPAAEEIEAVLARFRGCITQRPPAYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--NELELEIHCSKGTYIRTIIDD 186 +K GK+ + RQG V R +T++ L + + + +++ CSKGTYIR++ D Sbjct: 121 IKVGGKRAADLVRQGRAVDIPPRKVTIHRLELLHIDAVRQRIRIDVDCSKGTYIRSLCAD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G L A + +L R V + + T E L E E A + D Sbjct: 181 IGAGLHLPATMRFLLRSRVGAFTLADAYTPEELAEAGEDA--------------VCAADR 226 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-GRVAP 305 S P L F +G GL RV +G F+G+G D + P Sbjct: 227 ALS-LPCYELTQQRVKAFYSGLSTTERRPLAAGLYRVYA--DGVFLGIGRYDANAQEMYP 283 Query: 306 RR 307 + Sbjct: 284 EK 285 >UniRef50_B3WER2 tRNA pseudouridine synthase B n=9 Tax=Lactobacillus RepID=TRUB_LACCB Length = 306 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 99/305 (32%), Positives = 151/305 (49%), Gaps = 22/305 (7%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 +G +NG+L L KP GM+S DA+ ++I + GH+G LDP G+LP+ +G TK Sbjct: 2 KGTAMNGILPLYKPTGMTSADAVYHARKILGIKKIGHSGTLDPNVDGVLPLAIGAGTKAV 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPS 124 L+ S K Y LG T T D DG++V++ P+ F+A+QL AAL + G+I QIP Sbjct: 62 PQLMASGKVYTGEITLGFATTTEDLDGEVVDKTPLTQPFTADQLDAALTAWTGNITQIPP 121 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-------EGNELELEIHCSKG 177 M+SA+K G++LYEYAR G V R R TV + E+H SKG Sbjct: 122 MFSAVKVNGRRLYEYARAGETVKRPERQATVSQFTRTDEPVFSATDGTQRFRFEVHVSKG 181 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIRT+ D+G+ LG A + L R+ + +++ V++E L+ L Sbjct: 182 TYIRTLAVDVGKTLGVAAVMSQLTRVKSGGFTLKQAVSIEQLKAHAAAG---------TL 232 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI 297 ++ P+D +D P V+L + +G + VR+ G + Sbjct: 233 ADVIQPIDIAFADLPQVDLTVEQFEAISHGRFLSLDQ--QTPRVRLHFA--GVLKAIYRR 288 Query: 298 DDEGR 302 +D+ Sbjct: 289 EDDQY 293 >UniRef50_B7KGX7 tRNA pseudouridine synthase B n=19 Tax=Cyanobacteria RepID=TRUB_CYAP7 Length = 308 Score = 297 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 106/313 (33%), Positives = 156/313 (49%), Gaps = 27/313 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L+KP G +S+D + K++R+ R GH G LDP ATG+LPI +G+AT+ +L Sbjct: 8 MLGFLNLNKPGGWTSHDCVAKIRRLLKIKRVGHGGTLDPAATGVLPIAVGKATRLLPFLP 67 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y+ RLG T+T D G+I++ + EQ+ L F G+IEQIP +SA+ Sbjct: 68 EK-KAYQARIRLGVTTNTDDLQGEILQIGSANHLTLEQIDPLLRQFIGEIEQIPPAFSAI 126 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDD 186 GK+LYE AR+G V +R + V ++ + E ELELEI C GTYIR+I D Sbjct: 127 SQGGKRLYELARKGELVTPPSRIVHVEKINILDWYPGEHPELELEIICGGGTYIRSIARD 186 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG LG G + L R + + +TL L Q PL+ P Sbjct: 187 LGNLLGVGGTLANLIRTQSCGLELSKSLTLADLETQQHQGNL----------PLIFP-QL 235 Query: 247 PASDYPVVNLPLTSSVYFKNGNP---VRTSGAPLEGLVRVTEGENGKFIGMGEI------ 297 ++L + + G + + P V+V GENG F+G+GEI Sbjct: 236 ALKHLLTISLSAPEARRWCQGQSIVIINSIKLPQSQSVQVV-GENGDFLGIGEIATVNIS 294 Query: 298 -DDEGRVAPRRLV 309 D E + P+ ++ Sbjct: 295 DDREQTLIPKVVL 307 >UniRef50_Q493T5 tRNA pseudouridine synthase B n=2 Tax=Candidatus Blochmannia RepID=TRUB_BLOPB Length = 260 Score = 297 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 126/256 (49%), Positives = 170/256 (66%), Gaps = 1/256 (0%) Query: 1 MSRPR-RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M R + R RDING+LLLDKP+G+SS L K+K+++NA + GHTG LDPLATGMLP+C Sbjct: 1 MKRYKNVRNRDINGILLLDKPKGISSGLFLNKIKKLFNAKKIGHTGTLDPLATGMLPVCF 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 G+ATK ++YLL SDKRY+V A+LG TDT D+DG I+ PV + L L++F G Sbjct: 61 GKATKLAKYLLHSDKRYKVSAQLGVSTDTFDSDGTIISVSPVQSNDYILEQCLESFIGIR 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 QIP M+S+LKY+G LY+YAR+GI PR+ R I +Y L I+ N +EL++HCS GTY Sbjct: 121 NQIPPMFSSLKYRGVPLYKYARKGIYFPRKPRSIHIYNLSLIKKTENIIELDVHCSTGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR+I++D+GE LGCGAHVI LRRL+V +Y M+ L + D+ LD Sbjct: 181 IRSIVNDIGEYLGCGAHVIELRRLSVGQYISSSMINPATLEAIFYNDSFDDVQVFCKLDA 240 Query: 240 LLMPMDSPASDYPVVN 255 L PM+ + ++ Sbjct: 241 FLTPMNMIMLELANIS 256 >UniRef50_A5IIS7 tRNA pseudouridine synthase B n=9 Tax=Thermotogaceae RepID=TRUB_THEP1 Length = 309 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 86/295 (29%), Positives = 153/295 (51%), Gaps = 20/295 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L+ KP+G +S+D + +V++ + GH G LDP A G+L I + + T+ ++ D Sbjct: 3 HGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y V RLG T+T D G++VEER + E++ A+ +F G+ +Q+P YSA K+ Sbjct: 63 LKKVYWVKMRLGLITETFDITGEVVEERECNATEEEIREAIFSFVGEYDQVPPAYSAKKH 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 +G++LY+ AR+G + + + ++++ + EG ++ S GTYIR++ D+G KL Sbjct: 123 KGERLYKLAREGKIINLPPKRVKIFKIWDVNVEGRDVSFRAEVSPGTYIRSLCMDIGYKL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GCGA + L R +V Y +E + + A E ++ ++P++ Sbjct: 183 GCGATAVELVRESVGSYTIEESLNVFE-------------AAPEEIENRIIPLEKCLEWL 229 Query: 252 PVVNLPLTSSVYFKNGNPVRTS------GAPLEGLVRVTEGENGKFIGMGEIDDE 300 P V + S+ NG+ + G +VRV E G+ + + E + Sbjct: 230 PRVVVHQESTKTILNGSQIHLEMLKEWDGFKKGEVVRVFN-EEGRLLALAEAERN 283 >UniRef50_Q02Z55 tRNA pseudouridine synthase B n=21 Tax=Streptococcaceae RepID=TRUB_LACLS Length = 330 Score = 296 bits (758), Expect = 7e-79, Method: Composition-based stats. Identities = 103/336 (30%), Positives = 162/336 (48%), Gaps = 44/336 (13%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++NG+L + K G +S D + K++ I + GH G LDP TG+LPI +G++T+ +Y+ Sbjct: 4 NLNGILNVYKEAGWTSFDVVAKLRCILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYM 63 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYS 127 + K Y +G T+T DADG IV + PV + ++ +A+ F G I+QIP MYS Sbjct: 64 EAAGKIYEGQVTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSRFVGKIKQIPPMYS 123 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYE------LLFIRHEG-NELELEIHCSKGTYI 180 A+K GKKLYEYAR G + R AR IT+ + + + EG ++ CSKGTY+ Sbjct: 124 AVKINGKKLYEYARAGQTIERPAREITIKSFVRTSPIDWNKEEGLVTFSFKVECSKGTYV 183 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT+ DL + LG H+ L+R A + ++ + L + E+ E + L + Sbjct: 184 RTLAVDLADSLGYAGHMSKLQRTASNGLLIKDAIKLSKIEEIQESGK---------LSTI 234 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNG---------NPVRTSGAPLEG------------ 279 L P + SD P VNL + G N V T+ + + Sbjct: 235 LYPAEYAVSDLPRVNLTTVQFDMARVGKKFAQSDWTNEVETADSSVNKTKQQEYLLTDLS 294 Query: 280 ---LVRVTEGENGKFIGMG--EIDDEGRVAPRRLVV 310 + N K + + + EG P +++V Sbjct: 295 LLTTEKFAAFYNDKLVAVYMKHPEKEGIWKPNKVLV 330 >UniRef50_C5RBC4 Pseudouridylate synthase n=2 Tax=Lactobacillales RepID=C5RBC4_WEIPA Length = 336 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 88/295 (29%), Positives = 143/295 (48%), Gaps = 19/295 (6%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 + + R ++G++ + K +GM+S+D + K++RI + GH G LDP G+LP+ LG+AT Sbjct: 27 QKSKVRSMDGIIPIYKDKGMTSHDVVFKLRRILKMKKIGHAGTLDPNVDGVLPVALGKAT 86 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQ 121 K ++L ++ K Y LG T T D DG +++ + FS +++ + T G I Q Sbjct: 87 KTIEFLQETGKIYTGSITLGIATTTEDMDGDVIQTQHLVKPFSNDEINKGMRTLTGHITQ 146 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-------EGNELELEIHC 174 IP MYSA+K G++LY+YAR G V R R +YE Sbjct: 147 IPPMYSAVKVNGRRLYDYARAGETVERPKREAVIYEFKMTSATTFDEKKGTQTFSFLARV 206 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKGTYIRT+ DLG +L + + L R++ Y + + L+ + + + + Sbjct: 207 SKGTYIRTLAVDLGRQLQVPSVMSQLTRISAGGYDITQAHRLDEIAQRMTE--------K 258 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKN--GNPVRTSGAPLEGLVRVTEGE 287 L LMP+++ + Y V L K+ G P E +V +G+ Sbjct: 259 GSLGDWLMPLETAVAQYTHVELNDEQWEKVKHGIGQPASLHEPTTEKIVLTYKGD 313 >UniRef50_Q2LWU1 tRNA pseudouridine synthase B n=1 Tax=Syntrophus aciditrophicus SB RepID=TRUB_SYNAS Length = 312 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 151/282 (53%), Gaps = 9/282 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L+LDK G +S +Q+VKRI +AGH G LDPLATG+LP+CL EATK Q+L Sbjct: 1 MDGILILDKSPGKTSQKVVQEVKRILGVRKAGHAGTLDPLATGVLPLCLNEATKLVQFLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK YR LG T+T D +G+I + R ++ AL F G I Q P YSA+K Sbjct: 61 LDDKEYRATMLLGVTTETMDIEGRITDRREPEVDEVRIREALQFFTGPISQEPPRYSAVK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 ++G+ LY +AR+G+++ R + VY + + + CSKGTYIRT+ DLGE+ Sbjct: 121 FKGRPLYSWARKGVDIALPPRTVQVYSSILEEIALPYVTFRVACSKGTYIRTLCADLGER 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + LRRL + +E V+LE + D E L ++P+ + Sbjct: 181 LGCGACMSVLRRLRCGCFTLETAVSLEDIA---------DGKGRETLLSRVIPLSDGLRN 231 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFI 292 + + S ++G S + + +G+ KF+ Sbjct: 232 VAAIEISEELSGRIRDGFQPDGSTLREYHIPSLADGDMVKFL 273 >UniRef50_A1WLI1 tRNA pseudouridine synthase B n=103 Tax=cellular organisms RepID=TRUB_VEREI Length = 331 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 126/315 (40%), Positives = 171/315 (54%), Gaps = 19/315 (6%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 SR R + R ++GVLLLDKP +SSN ALQK K + A +AGHTG LDPLATG+LP+C G Sbjct: 5 SRTRVQRRPVHGVLLLDKPLALSSNQALQKAKWLLRAEKAGHTGTLDPLATGVLPLCFGA 64 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE---RPVTFSAEQLAAALDTFRGD 118 ATKFSQ LD+ K Y IA G T T DA+G +++ P + E+L+A F G Sbjct: 65 ATKFSQLQLDAPKTYEAIALPGVTTSTGDAEGAVLQRCAVDPAQLAPERLSAVQRQFTGP 124 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELL----FIRHEGNELELEIHC 174 I Q+P M+SALK G+ LY YAR GI + R AR + ++ L +++ + C Sbjct: 125 ISQLPPMHSALKKDGRALYTYARAGIALERAARAVVIHALELSLVQHAPAQTAIKIAVTC 184 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKG YIRT+ +D+G LGCGAH+ LRR +ER ++LE L+ L E Sbjct: 185 SKGCYIRTLAEDIGAALGCGAHLSALRRTDSGGIGIERCISLERLQALPEAERL------ 238 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGM 294 L P S + + V L ++ F +G P R P V V + +G+ Sbjct: 239 ----ACLQPPQSLLTRHLRVTLDSDNAARFLSGLP-RRGAWPDAPAVAVFGADPPALLGV 293 Query: 295 GEIDDEGRVAPRRLV 309 G I G + P RL+ Sbjct: 294 GHIAG-GCLLPDRLL 307 >UniRef50_B0THR7 tRNA pseudouridine synthase B n=2 Tax=Heliobacteriaceae RepID=TRUB_HELMI Length = 306 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 102/312 (32%), Positives = 158/312 (50%), Gaps = 20/312 (6%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++ G L L KP GM+S+D + K +R+ R GH G LDP A G+LPI +G+AT+ Sbjct: 2 EPLELEGFLNLLKPPGMTSHDVVAKARRLLKEKRIGHLGTLDPDAAGVLPIAIGQATRLI 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSM 125 + + DK YR RLG TD+ DA G+IV+ V S + L FRG I Q P M Sbjct: 62 ELVAGVDKAYRTQLRLGAVTDSQDASGRIVKTGAVPALSRDDWEETLRPFRGQILQTPPM 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE---GNELELEIHCSKGTYIRT 182 SA+ GK+LYEYARQGIEV R ARP+++ + + ++ E+ +++ CS GTYIRT Sbjct: 122 VSAVSVGGKRLYEYARQGIEVERSARPVSISRIEIVHYDPATPEEIVIDVECSAGTYIRT 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+G++LGCG H+ +L R + + +TLE L E + + ++ Sbjct: 182 LCHDIGQRLGCGGHMGWLIRTRSGLFSLRDSLTLESLAEGPPK------------EQIVT 229 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNG--NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 P + + P + + G ++ G +R+ + +G DE Sbjct: 230 PFE-ALAHLPALEIGENRLAALSRGLAQYLQGDGWSEGQWIRMHRRQKLLAVGQAIRKDE 288 Query: 301 GRVA-PRRLVVE 311 + PR++ Sbjct: 289 QWLCQPRKVFTR 300 >UniRef50_B9KZ57 tRNA pseudouridine synthase B n=2 Tax=Thermomicrobia (class) RepID=B9KZ57_THERP Length = 302 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 146/297 (49%), Gaps = 12/297 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+LL+DKP+G +S+D +Q V+ GH G LDP A G+L I +G AT+ ++ Sbjct: 1 MHGILLVDKPRGWTSHDVVQWVRTRLRVQTVGHGGTLDPAAEGLLVIAVGIATRLVRHAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP---VTFSAEQLAAALDTFRGDIEQIPSMYS 127 D+DK Y LG T + D +G+ + P S + +AL F G+ EQ P +YS Sbjct: 61 DADKSYVAHIVLGTGTTSDDLEGEPLAASPLSLYRPSLRDVQSALAEFLGEYEQQPPIYS 120 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 ALK G Y AR G VP + R + V L +++ +L + + C KG Y+R+ DL Sbjct: 121 ALKVGGVAAYRRARAGQPVPLKRRVVRVNSLRLVQYSYPDLIVSLDCGKGFYVRSFARDL 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G +LG GA++ L R V ++ + +++ L ++ + I D Sbjct: 181 GTRLGTGAYLHGLVRTRVGRFSLASAWSIDELNRVLTPSSWPLIARH---------PDEF 231 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 ++ PV+ +P + +G PVR S + G +G +IG+ D + R Sbjct: 232 VAELPVLLVPERELRAWYHGAPVRCSASSSPGTTARAYAPDGNWIGLAHFDPQKRYW 288 >UniRef50_Q4FVL3 tRNA pseudouridine synthase B n=10 Tax=Bacteria RepID=TRUB_PSYA2 Length = 380 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 109/268 (40%), Positives = 152/268 (56%), Gaps = 16/268 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNA-----NRAGHTGALDPLATGMLPICLGEATKF 65 I+GV+L+DKPQGM+S + KVK ++ + +AGHTG LDP+ATG+LPICLGEATKF Sbjct: 21 ISGVILVDKPQGMTSQQVVSKVKYLFKSPNHDSKKAGHTGTLDPMATGLLPICLGEATKF 80 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPS 124 S Y LD+DK Y+ LG +TDT DADGQ+ E ++ F L F G +QIP Sbjct: 81 SHYQLDADKSYQATILLGSQTDTGDADGQVTAEATISAFDDTMLDKIAQQFLGAQQQIPP 140 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK GKKLYEYAR GIEV R R I + + + +++L + CSKGTY+R + Sbjct: 141 MYSALKKDGKKLYEYARAGIEVDRPPRDIILKAIELKAIDEQQIQLTVTCSKGTYVRVLA 200 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+ + +G H+ L RL V + ++ +TL +L L A E L+P+ Sbjct: 201 EDIAKAIGTLGHLTALSRLQVGDFKIDETITLANLEAL----------ALEQRQTYLLPV 250 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRT 272 D+ + L + G + Sbjct: 251 DACIDINAELTLSSEQCERVQMGQRLNV 278 >UniRef50_Q5FQM1 tRNA pseudouridine synthase B n=9 Tax=Acetobacteraceae RepID=TRUB_GLUOX Length = 333 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 90/318 (28%), Positives = 155/318 (48%), Gaps = 16/318 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 R+RGRDI+G L+LDKP G +S D + K++ ++A +AGH G LDPLA+G+LPI G+AT+ Sbjct: 3 RKRGRDIDGWLILDKPLGPTSTDMVNKLRWAFDAKKAGHGGTLDPLASGVLPIAFGKATR 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 Y++D+ KRYR G+ T D +G+++ P + +Q+ A L G++ Q+P Sbjct: 63 TIPYIMDATKRYRFTLTFGESRTTDDLEGEVLATSPNRPTDDQIRAVLPALTGNVMQVPP 122 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELL-FIRHEGNELELEIHCSKGTYIRTI 183 ++SAL+ G++ Y+ AR G RP + + R + N ++ KG Y+R++ Sbjct: 123 VFSALRVGGERAYDMARAGRPPELPPRPARIDSITLVERPDANTAVFDVQSGKGVYMRSL 182 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D+ G H+ LRR + + +T++ + Q + A+ L L+ Sbjct: 183 ARDIALACGTVGHISVLRRTKCGPFDLSHALTIDQIS---LDKSTQTVDNADALPAPLLD 239 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGN---------PVRTSGAPLEGLVRVTEGENGKFIGM 294 + D P + + G P+ S + L R GE +G+ Sbjct: 240 AATALVDIPALAVTDAEGRMLVWGQSIDPADLVHPLPASSQGEDHLWRAMIGE--HVLGL 297 Query: 295 GEIDDEGRVAPRRLVVEY 312 + GR+ R++ + Sbjct: 298 CHVR-HGRLRAARMLENH 314 >UniRef50_C6HXK4 tRNA pseudouridine synthase B n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HXK4_9BACT Length = 320 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 109/300 (36%), Positives = 160/300 (53%), Gaps = 17/300 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+LL+DKP G +S+D + +V+++ ++ GH G LDP+A+G+LP+ +GEATK S ++L Sbjct: 12 VSGMLLVDKPAGPTSHDIVHRVRKLTGIDKVGHGGTLDPMASGLLPLLVGEATKMSSFIL 71 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 DK Y LG TDT D+ G +V P S+ +L F G+ Q P MYSA Sbjct: 72 ADDKSYEFDLTLGATTDTDDSTGVVVSTHSVPEDLSSVRLRTVARDFEGERFQQPPMYSA 131 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K QG LY+ AR+G+ VPRE R I +Y L I E L +HCSKGTYIR + ++G Sbjct: 132 VKQQGVPLYKLARKGVTVPREPRRIEIYSLELIAVEPPVLTFRVHCSKGTYIRVLAREIG 191 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 E L GAH+ LRRL+V + + TL + ++ A + + LL P D Sbjct: 192 EALSTGAHLSRLRRLSVGTFSLAEATTLAVME--------KEWAAPDFIRNLLGP-DRVF 242 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGA-PLEGLVRVTE-----GENGKFIGMGEIDDEGR 302 P V L +S G + + EGL + + G++GK + E EG Sbjct: 243 DTLPGVRLLGEASTRLLKGALLPATAIFRREGLFHMKDMIRILGQDGKIRAIAEALREGE 302 >UniRef50_C4FYS6 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYS6_ABIDE Length = 309 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 96/288 (33%), Positives = 149/288 (51%), Gaps = 19/288 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 INGV+ + K G +S DA+ ++ I + GHTG LDP A G+LP+C+G+ATK + L Sbjct: 2 INGVINVYKEVGYTSRDAVSRLTGILRQRKIGHTGTLDPAAEGVLPMCVGKATKLCELLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-------FSAEQLAAALDTFRGDIEQIP 123 K+Y + +LG TDT D G+I E+ +AE L D F G Q P Sbjct: 62 GHKKQYIAVMKLGIATDTEDTTGEITEKTNYPENWYEENLTAENLTKITDKFIGTQFQTP 121 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIR 181 MYSA + G++LYE AR+G + R+ ITVY + + E+ + + CSKGTYIR Sbjct: 122 PMYSAKRVNGRRLYELAREGKVIERKPCEITVYGIEIKNIDIINREITVIVDCSKGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+GE LGC A + L R + +E L+ + ++V++ +D ++ Sbjct: 182 TLCKDIGEALGCKAAMKSLLRTRTGDFYLENSYKLDEIEKIVKENR---------VDEII 232 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTEGEN 288 +P++ + +++ + V NG V A LE G + +GE Sbjct: 233 IPIEKIFYNLRRIDVTGYAGVLLDNGGIVNMEEARLEPGFDNIKDGEK 280 >UniRef50_Q0EZ77 TRNA pseudouridine synthase B n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ77_9PROT Length = 307 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 115/314 (36%), Positives = 164/314 (52%), Gaps = 31/314 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKF 65 I+GV+ LDKP G +S A+ + R+Y +AGH G LDPLATGMLPI LGEAT++ Sbjct: 2 ISGVVFLDKPYGWTSRQAVNAMIRLYTQPGEKRIKAGHAGTLDPLATGMLPILLGEATRY 61 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 ++ L +DK YRV L +TDT D +G++V + + AL F G IEQ+P Sbjct: 62 AEMGLSADKSYRVSFDLSYQTDTLDCEGEVVARFDGAVNQAAVQTALAAFTGLIEQVPPA 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YSA++ GK+ + AR+G V ARP+TV+ + + E + L++ CSKGTYIR++ Sbjct: 122 YSAIRIDGKRAHAMARKGEAVHIPARPVTVHAITLVAFEFPLVTLQVDCSKGTYIRSLAR 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G LG G V LRRL+ +P MVTLE L+ D ++P+ Sbjct: 182 DIGAALGMGGCVTALRRLSTGGWPEAMMVTLEQLQAQP--------------DSCVLPLA 227 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRT---SGAPLEG----LVRVTEGENGKFIGMGEID 298 + P V L + F G ++ SGAP G VRV GE +G G + Sbjct: 228 QWLREMPGVTLEQDMASRFVQGQRIQLQAASGAPDPGDGQLPVRVFAGE--LLLGTGMLK 285 Query: 299 D---EGRVAPRRLV 309 + P R++ Sbjct: 286 SGHHRTVLHPSRIL 299 >UniRef50_A3VQI2 TRNA pseudouridine synthase B n=2 Tax=Alphaproteobacteria RepID=A3VQI2_9PROT Length = 320 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 97/319 (30%), Positives = 158/319 (49%), Gaps = 11/319 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RRRG+ ++G L+LDK S +A+ K++ +++A +AGH G LDPLATG+LP+ G Sbjct: 1 MAR-RRRGQPLHGWLVLDKAYDYGSTEAVSKLRWLFDAQKAGHAGTLDPLATGVLPVAFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK Y+ D K YR A+ G+ T D +G+++ ++ A L F G+IE Sbjct: 60 EATKTVPYIQDGKKTYRFTAKWGEARSTDDREGEVIATSAHRPERSEIEARLCDFEGNIE 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGTY 179 QIP +SA+K G++ Y+ AR+G+ V +R + + L + +E E KGTY Sbjct: 120 QIPPAFSAVKIDGERAYDLAREGVAVTPPSRMVCIDRLSLLDCPSEDEAVFEAVTGKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR ++ DL + LG HV LRR AV + E VT+E L Sbjct: 180 IRALVRDLAKALGTVGHVAALRRTAVGPFSEEMAVTMEELTGRPSTDRLTVDDRPAEPAQ 239 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVR--------VTEGENGKF 291 L+P+++ +++ + + NG + + GL V E K Sbjct: 240 FLLPVEAALAEHLSATVDRAQAARLLNGGDAILAAPSMTGLRAGRAGDIEPVMAMEGDKP 299 Query: 292 IGMGEIDDEGRVAPRRLVV 310 + + ++ ++ P ++ Sbjct: 300 VAICRLEGM-KLRPVKVFA 317 >UniRef50_B6BVJ8 tRNA pseudouridine synthase B n=1 Tax=beta proteobacterium KB13 RepID=B6BVJ8_9PROT Length = 298 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 100/300 (33%), Positives = 155/300 (51%), Gaps = 18/300 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G + + KP+G SSN L K+K + +AGH G LDP ATG++PI GEATKFS +L+ Sbjct: 10 SGYISVIKPKGWSSNQLLSKLKWLLQIKKAGHGGTLDPFATGIVPIFFGEATKFSNRVLE 69 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA--EQLAAALDTFRGDIEQIPSMYSAL 129 S+K Y +LG + T D +G+++++ L L+ F G Q P YSAL Sbjct: 70 SNKEYIAELKLGFESSTGDTEGELLKDDSFNEEKLPSNLENILNEFLGIQRQTPPKYSAL 129 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 KY GK YEYAR GIE+P + R I ++ + + +++ ++ CSKGTYIRT+ +D+ + Sbjct: 130 KYNGKPYYEYARAGIEIPIKTREIEIFSIDLVNFTNHQITFQVSCSKGTYIRTLGEDIAK 189 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 K+G ++ L R+ V K +++ + EL + E LL P+ Sbjct: 190 KIGTKGYLTNLERIRVGKIKKIDSFSVDQIEEL----------SIEERKKLLKPI-YQLL 238 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 + P + L + NG + + E L+ FIG+G I D + P RL+ Sbjct: 239 ELPKIELNNNDTKNILNGQNLDIAIEAGEFLLFF----EKTFIGIG-ISDGEMIKPVRLI 293 >UniRef50_B1CB51 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CB51_9FIRM Length = 302 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 93/310 (30%), Positives = 156/310 (50%), Gaps = 19/310 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGV+ ++K Q M+S+D KV++I + GH+G LDP+A G++ + +G +TK S Y+ Sbjct: 2 LNGVICINKEQDMTSHDVCFKVRKILGTKKVGHSGTLDPMAEGVMGVLVGRSTKLSSYIT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y + G+ +D+ D + + F+ + ++ F GDI Q P +YSA+K Sbjct: 62 SFDKEYIAGIKFGKDSDSYDIWTDMKDVPIPDFTKKDFKKVINRFVGDITQTPPIYSAIK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-LELEIHCSKGTYIRTIIDDLGE 189 +GK LY+YA +G EV +R + + + I ++++ CSKGTYIR++I D+G Sbjct: 122 VKGKPLYKYALKGEEVEIPSREVCIDSIEIIETNLPYSAKIKVSCSKGTYIRSLIHDIGV 181 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG A + L R +E +TL +L + V+ +D ++ D + Sbjct: 182 SLGTSAVMNSLVRTKNGVLNIEDSITLSNLEDKVKSGR---------VDEVIKRDDYFLT 232 Query: 250 DYPVVNLPLTSSVYFKNGNPV-------RTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 D V++ +S NGN + T VR+ KFIG+G+ DE Sbjct: 233 DIHRVDVNPSSGKILLNGNGLIKKNLITPTDDIKPGTTVRLYL--EDKFIGLGKKTDEEG 290 Query: 303 VAPRRLVVEY 312 + R + + Y Sbjct: 291 ILIRPIKILY 300 >UniRef50_D2R7P9 tRNA pseudouridine synthase B n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7P9_9PLAN Length = 301 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 85/308 (27%), Positives = 142/308 (46%), Gaps = 23/308 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L+++KP G +S D + +V+R + GH G LDPLATG+L I +G T+ +Y+ Sbjct: 1 MDGILIVNKPAGPTSRDVVNRVQRCVKPAKVGHAGTLDPLATGVLVIGIGAGTRLVEYVQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQ-IVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y RLG +DT D G I + S + L L F G I Q P YSAL Sbjct: 61 QMPKTYVGQFRLGISSDTEDITGCCITHDESPVVSRDDLRRVLPRFLGKISQKPPAYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K +G++ Y+ AR+G V R I + L R + + EL I C GTY+R++ D+ Sbjct: 121 KVEGERAYDLARRGETVELAPREIVIRRLELTRFDYPDFELVIDCESGTYVRSLGRDIAS 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 L A + L R ++ + +ER +T++ + + E + L+P+ + Sbjct: 181 ALETHAVMTDLIRTSIGSFSLERAITMDSI-------------SRETITEHLLPLLAATE 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAP-----LEGLVRVTEGENGKFIGMGEID--DEG- 301 P V L S + G + + + + + + E+ D+G Sbjct: 228 QLPQVLLTEESVRSLQQGKRIAAPPVDLCLDTTQTVEVAAIDSRDRLVAICELTHRDDGS 287 Query: 302 -RVAPRRL 308 + P ++ Sbjct: 288 ALLKPHKV 295 >UniRef50_Q38W87 tRNA pseudouridine synthase B n=3 Tax=Lactobacillaceae RepID=TRUB_LACSS Length = 305 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 101/310 (32%), Positives = 147/310 (47%), Gaps = 19/310 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ L K +GM+SND + KV+RI + + GH+G LDP G+LPIC+G+ATK L+ Sbjct: 1 MDGIIPLYKERGMTSNDCVFKVRRILHMKKVGHSGTLDPNVDGVLPICIGQATKVVDQLV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 S K Y LG T T D DG++VEE+ + S E++ L +F G+ QIP M+SA Sbjct: 61 HSGKVYTGEITLGLSTTTEDLDGEVVEEQQLTEPISTEKIKETLASFLGESIQIPPMFSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELL---FIRHEG----NELELEIHCSKGTYIR 181 +K G++LY+YAR G V R R IT+ + + CSKGTYIR Sbjct: 121 VKVNGRRLYDYARAGDPVERPQRKITITQFDLQGEPEFDAKTGRQTFRFIAGCSKGTYIR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D G KLG A + L RL + VTL L E + + DI L Sbjct: 181 TLAVDFGRKLGLPAVMSDLTRLKSGGIQIGSCVTLAQLAEAADNGQLADI---------L 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 +P+D + + L NG + E L EG + Sbjct: 232 IPLDHVFEENVKIALDDDQWAKILNGVFLTFPEQTEEILALTYEGHIKALYQVANAKQH- 290 Query: 302 RVAPRRLVVE 311 P ++ ++ Sbjct: 291 LYRPYKMYLQ 300 >UniRef50_Q8R5X8 tRNA pseudouridine synthase B n=16 Tax=Fusobacterium RepID=TRUB_FUSNN Length = 287 Score = 290 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 158/295 (53%), Gaps = 14/295 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G+++++KP+G++S D ++K+K+ + GHTG LDPLA G++ +C+G+ATK + L Sbjct: 1 MEGIIVINKPKGITSFDVIRKLKKFLKTKKIGHTGTLDPLAIGVMLVCVGKATKLASDLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y +G TDT D +G+ + E + S E L +L F G+I+Q+P MYSA+K Sbjct: 61 AKDKVYIADFDIGYATDTYDIEGKKIAENIIEVSKENLEQSLKKFIGNIKQVPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G KLY AR+GIEV R R IT+ + + + N+ ++E SKG YIR++I D+G+ Sbjct: 121 IDGNKLYHLARKGIEVERPERDITIEYINLLDFKDNKAKIETKVSKGCYIRSLIYDIGQD 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG A + L+R V +Y +E +LE + E+ + + E Sbjct: 181 LGTYATMTALQRKQVGEYSLENSYSLEQIEEMTLNNNFKFLKTIEE-----------IFS 229 Query: 251 YPVVNL-PLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 Y NL + +KNGN V+ R+ + FIG+ I++ + Sbjct: 230 YDKYNLQTEKEFILYKNGNTVKIKENLENKKYRIYFQDE--FIGLANIENNNLLK 282 >UniRef50_C8WWJ2 tRNA pseudouridine synthase B n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWJ2_ALIAD Length = 302 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 106/314 (33%), Positives = 150/314 (47%), Gaps = 24/314 (7%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + ++GVLL+DKPQGM+S+D + +V+R R GH G LDP+ATG+L IC+G T+ +Y Sbjct: 2 QALDGVLLIDKPQGMTSHDVVNRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEY 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYS 127 L DK Y G TDT DA+G +V + + A G+I Q P YS Sbjct: 62 LGQGDKDYSGTVVFGVGTDTDDAEGTVVAQASAAGLDLAAVRQAALRLTGEIRQRPPQYS 121 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITV--YELLFIRHEGNE--LELEIHCSKGTYIRTI 183 A+ G++ Y+ ARQG +V R + V + L RHEG + CSKGTY+R + Sbjct: 122 AVHIDGRRAYDLARQGKKVELPERTVRVQAFTLDEFRHEGELAVARFHVRCSKGTYVRAL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DLG +G AH+ LRRLA+ VE ++L+ PA+ L DPLL Sbjct: 182 CRDLGALVGLPAHMRSLRRLAIGSARVEDAISLDD-------WMASGDPASHLRDPLLY- 233 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSG---APLEGLVRVTEGENGKFIGMGEIDDE 300 P+ P NG V LV V + G +GE+ D Sbjct: 234 ----LEGLPMWQPPREVLERLANGQTVEVGDLLSLSPGDLVLVIDA--GAVAAVGEVVDH 287 Query: 301 GR--VAPRRLVVEY 312 V P+++ + Sbjct: 288 QPAAVRPKKVFWKR 301 >UniRef50_D1N2Y9 tRNA pseudouridine synthase B n=2 Tax=Lentisphaerae RepID=D1N2Y9_9BACT Length = 254 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 91/215 (42%), Positives = 128/215 (59%), Gaps = 1/215 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVLL+DKP+ +S D + V+ +N + GH G LDP ATG+L + LG+ T+ S Sbjct: 16 SGVLLVDKPKEWTSFDVVNFVRARFNVPKVGHCGTLDPAATGLLVLVLGKFTQLSSKFSG 75 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y +LG TD+ D DG + E + + EQL A L F G+ Q P M SA+K Sbjct: 76 EDKIYEATLQLGLETDSCDLDGTVTAEHDWSGVTEEQLRATLAGFVGEQMQTPPMVSAVK 135 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYE ARQG+EV RE++PIT++ L R E + +HCSKGTY+RT+ D G+K Sbjct: 136 KDGKKLYELARQGVEVERESKPITIFSLDVTRCELPFCDFTLHCSKGTYVRTLCSDAGKK 195 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 LGCG + LRR ++ + VT++ L+ + Sbjct: 196 LGCGGTLAALRRTRSGQFSLADAVTVDTLKTFEQA 230 >UniRef50_A9BI94 tRNA pseudouridine synthase B n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI94_PETMO Length = 305 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 91/294 (30%), Positives = 146/294 (49%), Gaps = 24/294 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G L+++KP+G++S+D + +++ + + GH G LDP ATG+L + + +ATK ++ + Sbjct: 3 SGFLVINKPKGITSHDVINILRKKFGLQKIGHAGTLDPFATGVLVVGVNKATKLLEFFQN 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y V A LG TDT D +G+I E+ VT L +F G+ Q+P YSA K Sbjct: 63 EKKTYYVKAELGIITDTFDIEGKIQEKNIVTQQHISNLKDICFSFVGEYLQVPPAYSAKK 122 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 Y+GKKLYEYAR+G + + + +Y+L EG E + S GTYIR++I D+G Sbjct: 123 YKGKKLYEYAREGKIINLPPKKVKIYQLSNFSQEGQEFSFFVEVSSGTYIRSLIMDIGYA 182 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA L R+ K+ ++ + LE + ++ MD D Sbjct: 183 LGCGAVTKELCRVKSGKFELKDSILLEEVS-----------------LEKMLKMDEAL-D 224 Query: 251 YPVVNLPLTS----SVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 P V + N + S V++ + E F+G+G + + Sbjct: 225 LPYVKINNGQLVIKGQQIYKDNVLEFSNFNKNDYVKIYD-EKECFLGIGRAEKK 277 >UniRef50_Q0C5Z2 tRNA pseudouridine synthase B n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C5Z2_HYPNA Length = 313 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 100/321 (31%), Positives = 151/321 (47%), Gaps = 20/321 (6%) Query: 1 MSRPR-RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R R R+G + G + L KP M+S A+ +KR+YNA + GH G LDPLA G+LPI L Sbjct: 1 MARQRKRKGEPVTGWINLFKPVDMTSTQAVAIIKRLYNAEKVGHGGTLDPLADGILPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 G+ATK Q+ +D+ K Y R G T + DA+ +I V + AAL + G I Sbjct: 61 GQATKTVQWAMDAHKEYVFTIRWGISTASQDAEAEITATSDVRPERAAIEAALTRYVGTI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGT 178 +Q+P YSA+K G++ Y+ R+G EAR + V+ I + + + + KG Sbjct: 121 QQVPPKYSAIKVAGERAYDLVREGEAFELEAREVDVHAANVIGMPDADHTVIHVVSGKGF 180 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 Y+R + DL LG H+ LRR V + V++E L L E L Sbjct: 181 YVRALARDLAFDLGAEGHISQLRRTRVGAFDAPSAVSIEALEALKEDKPG--------LM 232 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKF------- 291 +L P+ + S P V + + + G V +EG E+ + Sbjct: 233 AILKPLHAVLSGMPQVQVSPHDAANIRQGRSVVLLPHVVEGWRAGRSEEDDRVALALAGD 292 Query: 292 --IGMGEIDDEGRVAPRRLVV 310 I +GE+ G+ P R+ Sbjct: 293 EAIALGEVRA-GQFEPVRVFA 312 >UniRef50_B9Y7W5 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7W5_9FIRM Length = 291 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 99/296 (33%), Positives = 152/296 (51%), Gaps = 22/296 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ L++KP GM+S D + +V++ GHTG LDP ATG+L + LG A K YL Sbjct: 10 VDGICLINKPAGMTSFDVVYQVRKAAGIKSVGHTGTLDPQATGVLVVLLGRACKALPYLS 69 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG +TDT D G+ +E RP + Q+ A L++F G Q+P M SA+ Sbjct: 70 GKTKEYIAELTLGTKTDTGDIWGKPLETRPAIKLEPGQIKAVLNSFLGVSMQLPPMVSAI 129 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G+KLYEYAR+G+EV RE RP+ + E+ ++ + + CS GTY+RT+ +D+ E Sbjct: 130 KKDGRKLYEYAREGVEVEREKRPVEIIEIELLQVAS-SIRFRVVCSNGTYVRTLCEDIAE 188 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG + L R Y +++ L+ +++ Q L+ D AS Sbjct: 189 KLGTVGTMSSLIRTRACGYTLDQCQPLDEVKQGHFQ--------------LVSIYDGIAS 234 Query: 250 DYPVVNLPLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 YP++ KNG +R S P+ G+V + + M E ++G Sbjct: 235 QYPLIEANPAQIPDIKNGKRLRLDSTEPVVGVV-----SENQVLAMMERQEDGIYR 285 >UniRef50_Q7MBB8 tRNA pseudouridine synthase B n=3 Tax=Cyanobacteria RepID=TRUB_GLOVI Length = 292 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 90/304 (29%), Positives = 146/304 (48%), Gaps = 20/304 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L LDKP G++S+D + +++R+ R GH G LDP ATG+LP+ +G AT+ ++L Sbjct: 1 MEGFLNLDKPAGLTSHDCIARLRRVLGERRIGHGGTLDPAATGVLPVAVGRATRLLRFLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K YR R G TDT D +G I+ + ++ L FRG I Q+P YSA+ Sbjct: 61 EG-KVYRATVRFGLSTDTDDLEGNILADAGAADLDLGRVQVHLQAFRGTISQVPPRYSAI 119 Query: 130 KYQGKKLYEYARQGIEV-PREARPITVYELLFIRHEG---NELELEIHCSKGTYIRTIID 185 +G++LY+ AR+G+ + R + + L + EL++EI CS GTYIR+I Sbjct: 120 HQEGERLYDLARRGVAIAEIAPRTVEIQALTVLDWYPGHYPELQIEIACSTGTYIRSIAR 179 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DLG LG GA + L R + +E + L + + I Sbjct: 180 DLGTALGTGATLARLLRTRSGPFALEASLPLAAVEAGFQAGTVPLIGPR----------- 228 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + V+L + + G V G ++ E E +F+G+ + G + P Sbjct: 229 TALAHLAAVHLEPPLAARWLMGQRV--PGDCEGAFAQIWECETDRFLGVAACEA-GSLQP 285 Query: 306 RRLV 309 ++ Sbjct: 286 LVVL 289 >UniRef50_B1ZX46 tRNA pseudouridine synthase B n=3 Tax=Verrucomicrobia RepID=TRUB_OPITP Length = 241 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 99/238 (41%), Positives = 147/238 (61%), Gaps = 5/238 (2%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +PR+ +++GVLL+DKP +S+D + +++R N R GH G LDP+ATG++ + +G Sbjct: 1 MIQPRK---ELDGVLLVDKPTAHTSHDVVARLRRKLNMKRIGHAGTLDPMATGLMILLIG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 +AT SQYL DK Y LG+ TD+ DADG+++ PV F+ ++ AA+ F GD Sbjct: 58 KATTISQYLTSLDKEYEGTIELGKVTDSQDADGEVLSTLPVPPFTEAEIRAAMAGFMGDQ 117 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q P MYSA+K G LY+ AR+G EV RE R I V R + + + C+KGTY Sbjct: 118 YQTPPMYSAIKVDGVPLYKTARKGGEVEREPRFIRVSSFELTRFALPQFDFRLRCTKGTY 177 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLREL-VEQAEQQDIPAAEL 236 +RTI DLG++LGCGAH+ LRR A K+ + +TL+ + L + + E++ IP + Sbjct: 178 VRTIAHDLGQRLGCGAHLAALRRTATDKFKLADALTLDAIEALPLPEIEKRLIPVYQA 235 >UniRef50_A9AV52 tRNA pseudouridine synthase B n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AV52_HERA2 Length = 291 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 102/303 (33%), Positives = 161/303 (53%), Gaps = 19/303 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L +DKPQG++S D ++ VKR R GH G LDP+ATG+LPI LG AT+ +YLL Sbjct: 2 LHGFLNIDKPQGITSTDVVRVVKRNARQKRVGHGGTLDPMATGVLPIALGNATRLLEYLL 61 Query: 71 DSD-KRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 + + K Y RLG TD+ D +G ++ E P+ + + L FRG I Q+P Y+A Sbjct: 62 EEERKAYTATLRLGITTDSDDVEGAVIAEAPIPPLDPALIESVLSQFRGAINQVPPQYAA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 ++ GK++YEYAR+G + ARPIT+ +L + + +L + + CSKGTYIR I D+G Sbjct: 122 IRVDGKRMYEYAREGKHIELPARPITIEQLDLLAWDAQQLTIAVDCSKGTYIRAIARDIG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCGAH+ LRR + + + L L + E+ L+P + Sbjct: 182 ALLGCGAHLTALRRTRAGAFDLSNSIGLAELDQ-----------QPEVFAAALLPPQAAI 230 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV-TEGENGKFIGMGEIDDEGRVAPRR 307 +++P++NL + G V+ RV + G+ + + + + G P + Sbjct: 231 ANWPLINLADAIVADVRMGRVVQVDSQAE----RVGLLDQAGQLVAIAVLREAG-YQPIK 285 Query: 308 LVV 310 + Sbjct: 286 VFA 288 >UniRef50_Q9Z5I4 tRNA pseudouridine synthase B n=3 Tax=Mycobacterium RepID=TRUB_MYCLE Length = 320 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 97/311 (31%), Positives = 164/311 (52%), Gaps = 30/311 (9%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP GM+S+D + + +RI+ R GH G LDP+ATG+L + + ATK L + Sbjct: 13 GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72 Query: 73 DKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y RLGQ T T DA+G++++ + E +A A+ RGDI+Q+PS SA+K Sbjct: 73 SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---------ELELEIHCSKGTYIRT 182 G++ Y R+G V +ARP+ + + +L++E+ CS GTYIR Sbjct: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + DLG+ G G H+ LRR V ++ +++ +LE L EL + D Sbjct: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD------------ 240 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 ++ +P +L ++ NG P+ ++G +G+ ++ +G+ I + + DEG Sbjct: 241 --ETCLLMFPRRDLTVSEVEATSNGRPISSAGI--DGIYAASDA-DGRVIAL--LRDEGP 293 Query: 303 VAPRRLVVEYP 313 + +VV +P Sbjct: 294 -RTKSVVVLHP 303 >UniRef50_C0GUB0 tRNA pseudouridine synthase B n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUB0_9DELT Length = 309 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 92/298 (30%), Positives = 150/298 (50%), Gaps = 18/298 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GV++L+KP+G +S L K+K + + GH G LDP+A G+L LG+ATK + Y+ + Sbjct: 14 DGVMVLNKPEGPTSTACLNKIKSRFKLKKLGHAGTLDPMARGVLVALLGQATKLAPYITE 73 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y + RLG TDT D G ++EE+ + S E + + ++ EQ SA K Sbjct: 74 GRKTYWGVIRLGVSTDTYDMQGTVLEEKDCSEVSPETIEREIKSWEDLKEQPVPAVSAAK 133 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +QGK Y AR G EVP + + I +Y+ + E +E I CS GTY+R++ LG + Sbjct: 134 HQGKPFYALARAGQEVPCKTKEIDIYQAQVLNIEPPLVEFRITCSAGTYVRSLAHSLGMR 193 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 +GC A + L R + +++ V L+ L E + L+ L+P+ S Sbjct: 194 VGCCAALAELVREKSHPFSLDQAVDLDTLMEARD------------LNEHLLPIPRAMSH 241 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAP--LEG--LVRVTEGENGKFIGMGEIDD-EGRV 303 + V L + +NG P+ AP ++G + +G + + E +GR+ Sbjct: 242 WEHVRLDPEQEAFVRNGRPIEARNAPRTVDGQHPRALLLSMDGSSLALAEARKTDGRL 299 >UniRef50_Q8D2X8 tRNA pseudouridine synthase B n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=TRUB_WIGBR Length = 327 Score = 287 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 185/302 (61%), Gaps = 6/302 (1%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 R+ING+LLLDKP G+SSN LQK+K+++ A +AG+ G LDP+A+GMLPI G+ATKFS Y Sbjct: 30 RNINGILLLDKPIGLSSNLILQKIKKLFKAKKAGYIGTLDPIASGMLPIFFGDATKFSDY 89 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 LL+++K Y++ A+LG++T+T D+ G+I+ RP+ + L F+G+I Q P M+S Sbjct: 90 LLNTNKWYKIKAKLGEKTNTLDSFGKIICIRPILNIKKLNIEKILSEFQGEIYQKPPMFS 149 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 +LK+ GK LY+YARQGI +PRE R + V+ + + L I CSKGTY+R+I+DD+ Sbjct: 150 SLKHLGKPLYKYARQGIYIPREKRKVYVHYIKLLSFSKKYFSLTIKCSKGTYVRSIVDDI 209 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 GEKL CGAH++ LRR + Y M+ L + ++ + LD L+P++S Sbjct: 210 GEKLFCGAHIVKLRRTKLFNYKESHMIDSNKLYNIKKK-----FNDLKKLDECLLPIESI 264 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P++ + +NG + L ++ + KF+G+ +I+ GR + Sbjct: 265 FKKLPIIVVNDDIINRLRNGIKLNFWKIKKNNLFKIISKDTKKFVGIIDINKYGRANSIK 324 Query: 308 LV 309 L+ Sbjct: 325 LI 326 >UniRef50_B3DZL5 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZL5_METI4 Length = 237 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 91/219 (41%), Positives = 133/219 (60%), Gaps = 1/219 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 DI+GVLL+DKP+G +S+D + V++ + + GH G LDPLATG+L + LG+ATK L Sbjct: 2 DIDGVLLVDKPKGFTSHDVVDFVRKKFKIKKVGHCGTLDPLATGLLVLVLGKATKIQDLL 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 + DKRY + RLGQ T T D+DGQ+VEE+PV S E++ D + GD Q+P M SA Sbjct: 62 MSEDKRYEGVLRLGQSTLTQDSDGQLVEEKPVPPLSLEEIKKVFDRYVGDFYQVPPMISA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K G LY+ AR+G E+ R+ R + VY + + + E+ C KG Y+RT D+G Sbjct: 122 IKSHGVPLYKLAREGKEIERKPRLVHVYSYEIKKWDSPFIHFEVVCGKGFYVRTYCHDIG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 + LGCG H+ L RL + + + ++ + L L E Sbjct: 182 QDLGCGGHLFSLVRLQSGNFKLNQALSFDFLNSLKSPEE 220 >UniRef50_C9LRE6 tRNA pseudouridine synthase B n=1 Tax=Dialister invisus DSM 15470 RepID=C9LRE6_9FIRM Length = 283 Score = 286 bits (732), Expect = 7e-76, Method: Composition-based stats. Identities = 91/299 (30%), Positives = 145/299 (48%), Gaps = 17/299 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVL + KP GM+S D + ++RIY + GH G LDP+A G+LP+ LG + + +Y Sbjct: 1 MDGVLNVLKPAGMTSFDVIACLRRIYGQKKIGHGGTLDPMAAGVLPVFLGRSARLIEYAP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y +G TDT D G+I++ V F G IEQIPS YSA+ Sbjct: 61 IHRKTYEAEFVMGLATDTEDMTGRIIKTGKVCSDISLWERVASKFTGIIEQIPSSYSAIM 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GK+ Y+ AR G +V +R + VY L + + L + CS GTY+R + DLG K Sbjct: 121 VDGKRAYQLARNGKQVILPSRKVEVYHLQIREIQSPYIRLSVTCSAGTYVRALGRDLGNK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 +G + +L R + + + + TLE + + DI S+ Sbjct: 181 MGVPLAMSFLLRTKMGVFSIGQAKTLEEIERNPKDCLMTDISL-------------LLSN 227 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 V+L ++ F G +RT+ +E + V + E +F+G I + G + P+++ Sbjct: 228 LENVSLSEDAAKDFLQGKRLRTALPDME-VTAVFQEE--RFLGTAFI-ENGVLHPKKVF 282 >UniRef50_UPI000185BE2E tRNA pseudouridine synthase B n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BE2E Length = 328 Score = 286 bits (732), Expect = 7e-76, Method: Composition-based stats. Identities = 92/285 (32%), Positives = 156/285 (54%), Gaps = 20/285 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++++DKPQG +S+D + K++RI+ + GH+G LDP+ATG+L + +G T+F ++ Sbjct: 10 SGIVIVDKPQGWTSHDVVGKLRRIFRTKKVGHSGTLDPMATGVLVLGIGRGTRFLPHVHA 69 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K YR RLG T T DA+G+++ E + + E + + F G I Q P+ SA+K Sbjct: 70 DTKSYRATIRLGAATLTDDAEGELLSESSAASVTDEMIREKITDFTGTIMQKPAAVSAVK 129 Query: 131 YQGKKLYEYARQGIEVPREARPITV--YELLFIRHEGN--------ELELEIHCSKGTYI 180 G + YE R+G +V ARP+T+ YE+L IRH+ + ++++E+ CS GT+I Sbjct: 130 IDGVRAYERIRRGEKVDIPARPVTITRYEVLDIRHDSDTSRPGECIDIDVEVDCSAGTFI 189 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + DLG+ LG G H+ LRR A + ++ +T++ L EQ + + AE+ P+ Sbjct: 190 RALARDLGDALGVGGHLTALRRTAAGVFTIDEALTIDELTAKAEQFDTANPEIAEMRRPI 249 Query: 241 ------LMPM---DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP 276 L+PM ++ + + + G + G P Sbjct: 250 PDRAASLLPMSLDEACLRCFDTREITEQQAADLAQGKWLEPIGKP 294 >UniRef50_Q30WI7 tRNA pseudouridine synthase B n=4 Tax=Desulfovibrionaceae RepID=TRUB_DESDG Length = 309 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 94/293 (32%), Positives = 146/293 (49%), Gaps = 20/293 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVL+L+KP+G +S + ++KR + GH G LDP+A G+L + LG+ TK S YL++ Sbjct: 10 HGVLVLNKPKGPTSAHCIARIKR-LGQKKIGHAGTLDPMAQGVLLVLLGQCTKISGYLME 68 Query: 72 SD-KRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG+ TDT D +G+ + T + E + A+D + G EQ YSA Sbjct: 69 GGEKIYSGTLELGRTTDTWDDEGETLSTADWTHVTEEDVVRAVDLWTGSSEQQVPAYSAA 128 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K++G+ LY+ AR+G E P + R I + + + E + +HCS GTYIR++ LG Sbjct: 129 KHKGQPLYKLAREGKETPVKTRRIEISQAETLAVELPFVRFRVHCSSGTYIRSLAHSLGN 188 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LGCGA + L R + ++ L+ + L E AE L ++P+D Sbjct: 189 RLGCGAVLTELIREYSHPFSLDEAHDLDDV--LAEPAE---------LAGRVIPLDKALP 237 Query: 250 DYPVVNLPLTSSVYFKNGN-----PVRTSGAPL-EGLVRVTEGENGKFIGMGE 296 +P + L KNG P + P EG+ V G + + E Sbjct: 238 HWPKLRLSAADEARVKNGMPHPYDPAEMASMPFTEGIRAVLLDPAGDPLALAE 290 >UniRef50_Q5PAY2 tRNA pseudouridine synthase B n=10 Tax=Anaplasmataceae RepID=TRUB_ANAMM Length = 306 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 154/307 (50%), Gaps = 21/307 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L +DKP MSS + +VK+I+N + GH G LDPLATG+LP+ +GEATK Y +D Sbjct: 9 GWLNVDKPLHMSSGSVVGRVKKIFNC-KVGHAGTLDPLATGVLPVAVGEATKTIPYAVDG 67 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y V + G + T DA+G+I++ + SA+ + AL F G+I Q+P +SA++ + Sbjct: 68 LKSYAVTVQWGSQRSTDDAEGEIIKTSSLRPSADSIREALGQFVGNIRQVPPAFSAVRVR 127 Query: 133 GKKLYEYARQGIEVPREARPITV--YELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y AR+G V + + + +LL E N + I C KG YIR+ DLG Sbjct: 128 GVRAYRLARRGEAVSLPPKEVCIVSIDLLSADEESNTADFLIVCKKGVYIRSFARDLGAS 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC +V +LRR +V + E VTL+ L L + A++L+ L+P+ D Sbjct: 188 LGCFGYVSFLRRKSVGPFSEENSVTLDRLEALAD---------ADVLNEALLPISYVMGD 238 Query: 251 -YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE-------NGKFIGMGEIDDEGR 302 +++ + K G V L GL + G + + ++ G Sbjct: 239 ALLRLHVDAEVAEIVKKGQSVSLQRTSLNGLYAAENYDMCYLSRVGGVPVAVCKVV-NGT 297 Query: 303 VAPRRLV 309 P R+ Sbjct: 298 ARPVRVF 304 >UniRef50_A0LHM2 tRNA pseudouridine synthase B n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=TRUB_SYNFM Length = 306 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 100/264 (37%), Positives = 146/264 (55%), Gaps = 11/264 (4%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 R ++ +G+L+LDKP+GM+S+ + +VKR+ +AGH G LDP ATG+L +C+ +AT+F+ Sbjct: 2 REKEPSGLLVLDKPEGMTSSTLVTRVKRLLGLRKAGHCGTLDPFATGVLLVCVNQATRFA 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSM 125 + L K YR ARLG TDT D G +V R V S +L A+ G Q Sbjct: 62 EQLTGQTKVYRFTARLGIETDTLDRTGTVVRTRDDVVPSERELLEAVRLHEGTQVQEVPR 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 Y+A+K QGK+LYE AR+GI+V R + ++ I + E+ LE CSKGTY+R + Sbjct: 122 YAAVKVQGKRLYELARKGIDVELPRREVHIHRFDLISYRYPEVVLETKCSKGTYVRQLAA 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DLG +LGCGAHV++LRRLA + +ER +LE + + L+PM Sbjct: 182 DLGRRLGCGAHVMHLRRLACGPFGLERASSLEQMHDGASDGSWL---------AKLVPMA 232 Query: 246 SPASDYPVVNLPLTSS-VYFKNGN 268 S P + + + G Sbjct: 233 DALSHLPALTIEDGQVLSRLRYGQ 256 >UniRef50_A7BD72 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD72_9ACTO Length = 355 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 151/307 (49%), Gaps = 29/307 (9%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R R G+L++DKPQG++S+D + +V+R+ + GH G LDP+ATG+L I +G Sbjct: 6 MARRPDNPRP--GLLVIDKPQGLTSHDVVSRVRRLARTRKVGHGGTLDPMATGVLVIGIG 63 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDI 119 +ATK ++ K YR R G T+T DA+G + S EQL AAL RGDI Sbjct: 64 KATKLLTWVSGHSKEYRATIRFGVATNTDDAEGVATAAVGCASLSEEQLEAALAPQRGDI 123 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELEL--------- 170 Q+PS SA+K GK+ Y AR G +V ARP+ + L + + Sbjct: 124 MQVPSTVSAIKVNGKRAYALARAGEDVELAARPVRISRLEVLAPPRPAWCILDEPDPETA 183 Query: 171 -----------------EIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERM 213 + CS GTY+R + D GE LG GAH+ LRR V P+E Sbjct: 184 PDGAVAPGSVRVVDVDVVVECSSGTYVRALARDAGEALGVGAHLTALRRTRVGDVPLEAA 243 Query: 214 VTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS 273 +TL+ L VE A + AE + PL+ ++ + +P + + + F +G R S Sbjct: 244 MTLDELSAAVEAASAEGESDAEPVLPLVPLGEAARTMFPSLLMTEAEAGAFAHGQAPRRS 303 Query: 274 GAPLEGL 280 + L Sbjct: 304 RSELAQW 310 >UniRef50_Q3ABA1 tRNA pseudouridine synthase B n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=TRUB_CARHZ Length = 288 Score = 284 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 92/306 (30%), Positives = 147/306 (48%), Gaps = 29/306 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + L KP GM+S+D + V++ + GH G LDP A G+LP+ +G+AT+ +YL Sbjct: 1 MDGFINLLKPPGMTSHDVVAYVRKKLKTGKVGHLGTLDPAAAGVLPVAVGQATRLIEYLE 60 Query: 71 D-SDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 + + K Y G T T D +G+I+E++ +F +A + L F G+IEQ P + SA Sbjct: 61 NVAMKEYLAEIVFGITTATWDMEGEILEQKDASFLTAGDIEKVLGHFHGEIEQTPPLASA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNE--LELEIHCSKGTYIRTII 184 +K GK LY Y RQG +V R + + + + + + + L I CS+GTYIR+I Sbjct: 121 VKVSGKPLYRYQRQGEKVEPPKRKVFIDSIELLEFLADKPQPAVRLYIRCSRGTYIRSIA 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +++G L GA + +L R + ++ L D L+P Sbjct: 181 NEIGNLLKTGATLKFLLRTRSGPFLLDDSNLLHE-------------------DFTLIPP 221 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTEGENGKFIGMGEIDDEGRV 303 + D+P +NL + KNG V+ G V GE K I G I + Sbjct: 222 EQLFQDFPKINLTREQYLRVKNGGGVKVETKGENFGPVFAYYGE--KIIATGMICGQ-IF 278 Query: 304 APRRLV 309 P ++ Sbjct: 279 RPEKVF 284 >UniRef50_Q04ED7 tRNA pseudouridine synthase B n=1 Tax=Oenococcus oeni PSU-1 RepID=TRUB_OENOB Length = 298 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 160/308 (51%), Gaps = 25/308 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG++L+DKP G++S D + K+++I+ + GHTG LDP TG+L I LG+ATK YL + Sbjct: 3 NGIVLVDKPAGLTSFDVVAKLRKIFQQKQVGHTGTLDPSVTGLLVIVLGKATKLIDYLQE 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAA--ALDTFRGDIEQIPSMYSAL 129 + K+YR LG +TDT D DGQ+ E + + + A D+F G +Q+P MYSA+ Sbjct: 63 NQKQYRGTLILGLKTDTQDMDGQVTEMQFLKEAIADFKKKAAFDSFLGSSDQLPPMYSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLF---IRHEG----NELELEIHCSKGTYIRT 182 K GK LYE AR+G + R++R I V E + + + SKGTYIRT Sbjct: 123 KVGGKHLYELARKGETIERKSRKIKVMEFQQVGGSKFDASKGQEYINFVATVSKGTYIRT 182 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 +I+D G KLG A ++ LRR+ Y V+ + LE + A++ ++ Sbjct: 183 LIEDFGAKLGLPATMMRLRRIEADGYDVKNSINLEEIL------------ASKTPRKFII 230 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 PM+ P ++ KNG ++ + V++ N F + E D G Sbjct: 231 PMEKLLPTLPKYSVGSDDWQLIKNGGWLKELPISV-SPVKIFY--NNSFQAIYEKQD-GF 286 Query: 303 VAPRRLVV 310 P+++++ Sbjct: 287 YKPKKMLI 294 >UniRef50_D1BM63 tRNA pseudouridine synthase B n=3 Tax=Veillonella RepID=D1BM63_VEIPT Length = 313 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 90/328 (27%), Positives = 138/328 (42%), Gaps = 43/328 (13%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L KP G++S+DA+ +RI R GH+G LDP+A G+LP+ LG+AT+ +Y Sbjct: 1 MDGILPFLKPPGITSHDAVAICRRILKEKRIGHSGTLDPMAYGVLPVFLGKATRLIEYTE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQI-----------------------VEERPVTFSAEQ 107 D DK Y +LG TDT D+ GQ + V S E+ Sbjct: 61 DFDKTYVAECKLGTFTDTEDSSGQTVLPDTNMVLRDGVVLNQAIQSTEISATMVKPSFEE 120 Query: 108 LAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE 167 L + L F G +Q PS YSA+K G + YEYAR+GI V R I + + I + Sbjct: 121 LVSILKKFAGIQDQRPSKYSAIKVNGIRAYEYARKGIPVELPLRQIHIKNIELIAYGFPF 180 Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 + + C+ GTYIR+++ D+ LG + L R V + + E + Sbjct: 181 FTVRVTCTGGTYIRSLLRDICIALGIPGTMTSLARTQVGPFDIGSAKMAEEI-------- 232 Query: 228 QQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPV----RTSGAPLEGLVRV 283 LL+P D+ S V + G + S + R Sbjct: 233 ------MLHGKSLLLPTDAAVSHLSKVTVNSVQLRMMVQGKELPIEREFSFTEPDNFYRA 286 Query: 284 TEGENGKFIGMGEIDDEGRVAPRRLVVE 311 FIG+ + + + +E Sbjct: 287 YGPLG--FIGIMRRTNHSLKVEKNIFIE 312 >UniRef50_B0S1E2 tRNA pseudouridine 5S synthase n=2 Tax=Finegoldia magna RepID=B0S1E2_FINM2 Length = 287 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 87/291 (29%), Positives = 148/291 (50%), Gaps = 17/291 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++ V+ + K +G +S D + K I + GH G LDP ATG+L + +G+ TK ++YL+ Sbjct: 1 MDCVINVFKEKGYTSQDVVSICKGILKTKKIGHAGTLDPDATGVLLLGVGKGTKITEYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGD-IEQIPSMYSAL 129 + K Y G TDT D G + T+ E+L LD G IEQ+P MYSA+ Sbjct: 61 EHGKTYIFEMCFGTSTDTLDLSGNVTGFSEKTYDKEKLKKILDDLNGKTIEQVPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYEYAR+ E+ R++R IT++ + + N +++ CSKGTYIR +I+D+ + Sbjct: 121 KVNGKKLYEYARENKEIKRKSRKITIFNIEPLYILENSCIIKVRCSKGTYIRVLIEDIAK 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL A++ L R+ + ++ V ++ LR+ ++ + + + Sbjct: 181 KLDKLAYMKSLIRVNSGGFDIKDSVKIDSLRKCN-------------IEDVSFSVYESLT 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 + + L + NG + ++ + + +FIG+G I+D Sbjct: 228 EMKSIELDESLYKKITNGVKINIVHDNIDNIKVIC---KDRFIGIGSIEDH 275 >UniRef50_A6LLV6 tRNA pseudouridine synthase B n=1 Tax=Thermosipho melanesiensis BI429 RepID=TRUB_THEM4 Length = 304 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 91/303 (30%), Positives = 146/303 (48%), Gaps = 19/303 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L KP+G++S+D + +V+R N R GH G LDP A G+L + +G T+ +YL Sbjct: 1 MMGFLNLYKPKGVTSHDVVDEVRRKLNIRRVGHAGTLDPFAEGVLVVGVGSTTRLLEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 KRY V A LG T+T D G+IVEER E++ + +F G +Q+P YSA K Sbjct: 61 VERKRYYVKALLGVITETFDITGEIVEERECNIPDERIIDVVKSFVGKYKQVPPAYSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 Y+G++LY+ AR+G + + +Y + I + E+ SKGTYIR++ D+G K Sbjct: 121 YKGERLYKLAREGKIISLPPVDVEIYGIDKIIVKKPHFSFEVEVSKGTYIRSLCMDIGYK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA L+RL+V + + + + E L L+ + Sbjct: 181 LGCGATAKELKRLSVGTFDIRDAINPFEV-------------GREKLLESLIDVQKVLP- 226 Query: 251 YPVVNLPLTSSVYFKNGN--PVRTSGAPLEGLVR---VTEGENGKFIGMGEIDDEGRVAP 305 P V + NGN + ++ + V NG+ + + + + + Sbjct: 227 LPKVEIYKDFVENIYNGNQPTLDFVKEMVDSFSKDDDVMLICNGQLVAIAKAERNSKFLE 286 Query: 306 RRL 308 + L Sbjct: 287 KNL 289 >UniRef50_D1AS76 tRNA pseudouridine synthase B n=1 Tax=Anaplasma centrale str. Israel RepID=D1AS76_ANACI Length = 308 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 100/306 (32%), Positives = 150/306 (49%), Gaps = 20/306 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L +DKP MSS + ++++I+N + GH G LDPLATG+LPI +GEATK QY +D Sbjct: 12 GWLNIDKPLYMSSGGVVGRIRKIFNC-KVGHAGTLDPLATGVLPIAVGEATKTVQYAVDG 70 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + G + T DA+G+++ + SA + AL F GDI+Q+P +SA++ Q Sbjct: 71 LKSYVAAVQWGAQRSTDDAEGEVIGTSSLRPSASSIREALGQFVGDIQQVPPAFSAVRVQ 130 Query: 133 GKKLYEYARQGIEVPREARPITV--YELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y AR+G V + + + +LL + E N I C +G YIR+ DLG Sbjct: 131 GVRAYNLARKGKAVSLAPKSVCIVSVDLLSVDEEKNVANFLIVCRRGVYIRSFARDLGIS 190 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC +V LRR +V + E +TLE L EL A LD +L+P+ Sbjct: 191 LGCLGYVSSLRRKSVGPFLEEDSITLERLEELAS---------ANALDGVLLPISHVMGA 241 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE-------NGKFIGMGEIDDEGRV 303 + + + + G V L GL V + G + + ++ G Sbjct: 242 TLKLCVDAEVAEIVRKGQSVSLQHTSLNGLYAVENYDMCYLSQVGGVPVAICKVV-NGTA 300 Query: 304 APRRLV 309 P R+ Sbjct: 301 RPVRVF 306 >UniRef50_C0QHM4 TruB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHM4_DESAH Length = 302 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 88/273 (32%), Positives = 133/273 (48%), Gaps = 18/273 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L +DKP G+SS + +VKR N +AGHTG LDP ATG++ + T+ S++LL Sbjct: 3 SGILAVDKPGGISSARLVSRVKRCLNVKKAGHTGTLDPFATGLMLCGINSGTRISRFLLG 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV------TFSAEQLAAALDTFRGDIEQIPSM 125 KRY LG TDT D G V+E+P + +Q+ ++TF G Q P + Sbjct: 63 GPKRYTATLCLGVETDTLDCTG--VKEQPANPTTVAAITPDQIIRVVNTFVGVQMQQPPV 120 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YSALK++G+ LY ARQG V + R I ++ + + +++H S GTYIR++ Sbjct: 121 YSALKHEGQPLYRLARQGRPVQKPLRQIEIFSASVEAIDLPHVTIKVHSSTGTYIRSLAR 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G LGCGAH++ LRR + V+ V L L + + ++PM Sbjct: 181 DIGSALGCGAHLVELRRTESCGFSVDNAVPLSDLEAMDKDEPLS----------RIVPMH 230 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE 278 S P + G + Sbjct: 231 EVLSFMPSFAADMQMVKRVGFGQDIGLEKLMAP 263 >UniRef50_B3CM19 tRNA pseudouridine synthase B n=5 Tax=Wolbachia RepID=TRUB_WOLPP Length = 353 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 151/349 (43%), Gaps = 51/349 (14%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG L LDKP GMSS A+ ++KRI+ +AGH G LDPLA+G+LPI LGEATK YL Sbjct: 2 VNGWLNLDKPTGMSSAQAVTQIKRIFGIKKAGHLGTLDPLASGILPIALGEATKTIPYLS 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y + G++T T D G I+ + Q+ A+ F G+I Q P +SA+K Sbjct: 62 CDLKAYNFTIKWGKQTTTDDLGGDIIRTSDIKPEYNQINCAIKDFIGEITQTPPQFSAVK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLG 188 +G + Y+ AR G +V + R + ++EL I + N + + C G Y+R+I DLG Sbjct: 122 IKGARAYKLARSGQKVNIKPRQVKIHELKMIFLDTINNIADFSMICGSGVYVRSIARDLG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR---------------------------- 220 +L C H+ LRR V + + VT+E L Sbjct: 182 IELNCFGHITQLRRTMVGDFKEDESVTIEQLTKKNTTTYSPQCLTLDTNTYKSCNGQKIL 241 Query: 221 -ELVEQAEQQDIPAAELLDP------------------LLMPMDSPASDYPVVNLPLTSS 261 V+ + +I +LD ++P++S V + L + Sbjct: 242 GAYVKNNVRDEIGLIPVLDTGMTSEGGMTEDDGGNTKGFIIPIESALKSMFKVEISLEEA 301 Query: 262 VYFKNGNPVRTSGAPLEGLVRVTEGENGKF-IGMGEIDDEGRVAPRRLV 309 + G + + + G I + G V P R+ Sbjct: 302 EKIRKGQEIILNNLRNLKNYDIFCTIVGNVPIAICSFT-HGYVKPIRVF 349 >UniRef50_Q6MD66 tRNA pseudouridine synthase B n=15 Tax=Chlamydiales RepID=TRUB_PARUW Length = 262 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 84/214 (39%), Positives = 124/214 (57%), Gaps = 2/214 (0%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKF 65 + G+LL++KP+G +S ++ +++ + GH G LDP ATG++ + +G T+ Sbjct: 36 PPSHLEGILLINKPKGKTSFSLVRDLRKRLGVKKIGHAGTLDPFATGVMVMLVGRNYTRL 95 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 S L SDK Y A LG TD+ D +GQ++ + + + EQ+ A F+G IEQ+P M Sbjct: 96 SDQFLLSDKEYIAEAYLGVVTDSYDCEGQVLSQSNIIPTLEQIKEAFSLFQGKIEQVPPM 155 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA K QGKKLYE ARQGI V R+ I+++ + + L I CSKGTYIR+I Sbjct: 156 FSAKKQQGKKLYELARQGIVVERQPVKISIHT-ELLSYNYPYLNFRIECSKGTYIRSIAY 214 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 DLG KLGCGAH+ L R + +E + + Sbjct: 215 DLGTKLGCGAHLSNLTRTRSGAFCLENCLNGAEI 248 >UniRef50_Q2G5F3 tRNA pseudouridine synthase B n=8 Tax=Sphingomonadales RepID=TRUB_NOVAD Length = 304 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 90/270 (33%), Positives = 136/270 (50%), Gaps = 19/270 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKF 65 ++G ++LDKP + S + VKR + GH G LDPLATG+LPI +GEATK Sbjct: 2 VDGWIILDKPLELGSTQGVAAVKRNLRQAGYGKCKVGHGGTLDPLATGVLPIAVGEATKL 61 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 +LD+ K Y G TD+ D +G IV V + L FR I+Q+P Sbjct: 62 CGRMLDASKVYAFTVAFGTETDSLDLEGGIVATSDVRPPLADVHVTLGAFRDSIDQVPPA 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-----LELEIHCSKGTYI 180 YSAL +G++ Y+ AR G V +R +T++ L G+E L H SKGTYI Sbjct: 122 YSALMVEGRRAYDLARAGETVELPSRRVTIHALTLDSWTGSEGAVETATLTAHVSKGTYI 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R++ D+ LG HV LRRL + +E+ ++L+ L L + A L+ + Sbjct: 182 RSLARDIARALGTVGHVTMLRRLKAGPFAIEQAISLDKLNALGQGAP---------LEHV 232 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPV 270 L+P+++ D P ++L + + G + Sbjct: 233 LLPLEAGLVDIPALDLDPEQARAVRQGRVL 262 >UniRef50_B9XFC5 tRNA pseudouridine synthase B n=1 Tax=bacterium Ellin514 RepID=B9XFC5_9BACT Length = 236 Score = 280 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 90/227 (39%), Positives = 130/227 (57%), Gaps = 2/227 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G LL+DKP G +S+D + ++R + + GH G LDP ATG+L I LG TK S+ L+ Sbjct: 8 DGALLIDKPVGYTSHDVVDAIRRRFQIKKVGHCGTLDPNATGLLIIVLGRGTKLSERLMS 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSALK 130 SDK Y + G+ TD+ DADG++V PV + +L F GD Q+P M SA+K Sbjct: 68 SDKVYEGTIKFGETTDSYDADGELVTSLPVPPMTLGELNETAAAFVGDQMQVPPMVSAIK 127 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G LY+ AR+G+EV RE R I +Y F + + +KGTY+R++ DLG+K Sbjct: 128 KGGVPLYKLARKGVEVEREPRFIHIYNFRFAEYNEPIGRFRVAATKGTYVRSLAHDLGQK 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEH-LRELVEQAEQQDIPAAEL 236 LGCG H+ LRR K+ V + L+ L + E++ IP +L Sbjct: 188 LGCGGHLATLRRTVSGKFDVANAIRLDQALELSAAELEKRVIPFLKL 234 >UniRef50_B5YEH8 tRNA pseudouridine synthase B n=2 Tax=Dictyoglomus RepID=B5YEH8_DICT6 Length = 293 Score = 279 bits (714), Expect = 9e-74, Method: Composition-based stats. Identities = 86/304 (28%), Positives = 142/304 (46%), Gaps = 21/304 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG LL++KP G++S + +++VK++ + GH G LDP A G+L I LG+ + +YLL Sbjct: 1 MNGFLLINKPPGITSFEVVRRVKKLSKEKKVGHMGTLDPRACGLLIIGLGKYVRLEEYLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQ--IVEERPVTFSAEQLAAALDT-FRGDIEQIPSMYS 127 K Y V G +DT D + ++ + E L L F G+IEQ P YS Sbjct: 61 KLPKTYIVEVLFGVSSDTYDRESYRFFYDKEEKPVNTEILEETLKKYFTGEIEQTPPPYS 120 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--NELELEIHCSKGTYIRTIID 185 A+ +G++ Y AR+ I V R +T+YE + + N + S GTYIR+++ Sbjct: 121 AVHIEGERAYNLARKNISVSLPKRKVTIYESEILNFDKTRNTALIRFKVSSGTYIRSLVH 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+GEKL V +L R + V + ++E + + LL P++ Sbjct: 181 DIGEKLNTKTLVSFLVRTDIGHLSVNDSIPYNKIKEGITK-------------KLLSPLE 227 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 D+PV NGN + + +E G+FI +G++ + P Sbjct: 228 --VLDFPVYKTSEEEEKKILNGNAIEARLSTIESPYISIINSQGRFIAVGKVSGN-IIKP 284 Query: 306 RRLV 309 ++ Sbjct: 285 DKVF 288 >UniRef50_C7LXY6 tRNA pseudouridine synthase B n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LXY6_ACIFD Length = 298 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 99/311 (31%), Positives = 151/311 (48%), Gaps = 30/311 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I G+ L+DKP G +S+D + + +R + R GH G LDP+A+G+L + + AT+ +YL Sbjct: 2 IQGIYLVDKPSGPTSHDVVARARRAFGTRRVGHAGTLDPMASGLLVLGVDRATRLLRYLE 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 KRYR +A LG TDT D DG +V+ RPV + E + A F +Q+P YSAL Sbjct: 62 AQTKRYRAVALLGVATDTDDLDGVVVDRRPVEEPTREAVVTACRRFVPGYDQVPPAYSAL 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELL---------FIRHEGNELELEIHCSKGTYI 180 G++ Y AR+G +V R + + E+ +G +EL + C GTY+ Sbjct: 122 HLDGERAYVRARRGEDVTLPRRRVRIDEIEVGAIWRDGGPGEPQGVRVELTVTCGPGTYL 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R+++ DLGE LG A + LRR V + V + V LE L Sbjct: 182 RSLVRDLGEALGTPATLASLRRERVGRLEVAQAVGLEDLERATP---------------- 225 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 +P+ + V L + F +G + EG V V G G ++G+ D Sbjct: 226 -VPLPLALAGLGRVELDGVDATRFLHGQRIEAPSGLDEGDVLV--GAEGSWLGVASCDGH 282 Query: 301 GRVAPRRLVVE 311 +APR ++V+ Sbjct: 283 -VLAPRVVLVD 292 >UniRef50_D1IN94 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IN94_VITVI Length = 502 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 121/216 (56%), Gaps = 3/216 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+L++KP+G +S K++R+ + GH G LDP+ATG+L +C+G+ATK + Sbjct: 285 VVLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMATGLLIVCVGKATKLVESYQGMV 344 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y I RLG+ T T DAD +++ P E + +F G+I Q+P M+SA+K Sbjct: 345 KGYSGIFRLGEATSTWDADSPVIQREPWEHIKDENIKKTAASFCGEIWQVPPMFSAIKVG 404 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+K+YE AR+G V R I++++ R + L + CSKGTYIR++ D G+ Sbjct: 405 GEKMYEKARRGESVELSPRRISIFKFDIERSLDDRQNLVFRVTCSKGTYIRSLCADFGKA 464 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 LG AH+ LRR ++ Y + + L E + + Sbjct: 465 LGSCAHLAALRRDSIGPYSADDAWEFKDLEEAITKG 500 >UniRef50_C1SPK2 tRNA pseudouridine 55 synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPK2_9BACT Length = 297 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 83/309 (26%), Positives = 146/309 (47%), Gaps = 26/309 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVL + K + M+S D ++ V+RI + GH G LDP+A G+LP+C+G ATK Y++ Sbjct: 1 MNGVLNIYKEKDMTSFDVVKAVRRITGVKKCGHLGTLDPMAEGVLPVCVGYATKLVDYMM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +DK Y +LG TD+ D+ G ++E+ + E++ L +F G+ E +SA+ Sbjct: 61 AADKEYVAQFKLGCSTDSYDSTGNVLEKCEDIKPDYEEVEKVLKSFVGEPELTIPAFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GK+ YE AR+G R + + ++ + +E E + C KGTY+R++I + G Sbjct: 121 KINGKRAYELARKGEIEDAGKRVMKINDITLMGYEYPEGMFRMSCYKGTYVRSVIHEAGL 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG + L R + + L L EL ++ E + + A+ Sbjct: 181 ILGTYGVMSGLIRTVSGNFDHKTAYKLGELEELKDKGELAGAFTSVVD----------AT 230 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE---------NGKFIGMGEIDDE 300 + + + +NG ++ V++ +GE G+ + E Sbjct: 231 GWGTAVVHRDAVRLVQNGVSIKRH-----NYVKLPDGESDMYFMATPEGELLAFAEYAV- 284 Query: 301 GRVAPRRLV 309 G +P R++ Sbjct: 285 GDTSPLRII 293 >UniRef50_Q2NIZ2 tRNA pseudouridine synthase B n=7 Tax=Acholeplasmataceae RepID=TRUB_AYWBP Length = 283 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 78/298 (26%), Positives = 148/298 (49%), Gaps = 20/298 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG L++KP+ M+S+D + ++K+ ++ ++ GHTG LDPLA+G+L +C+G+ATK + Sbjct: 1 MNGFFLVNKPEKMTSHDVVFQIKKKFHFDKVGHTGTLDPLASGLLIVCVGKATKLAFLFD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RGDIEQIPSMYSAL 129 K Y+ + DT D G++++ + + + + + +F + QIP M+SA+ Sbjct: 61 KLSKTYQGTFLFNKHYDTLDVKGKLLDTKNIPLNDFAIQTSFASFHQKKYWQIPPMFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR-HEGNELELEIHCSKGTYIRTIIDDLG 188 K +G+K+Y ARQ V R + ++ ++++ +H SKGTYIR++ DL Sbjct: 121 KIKGQKMYRLARQNQVVDIPPREVFIHHFEKKSLFCHDQVDFLVHVSKGTYIRSLARDLA 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +L ++ L+R A+ + ++ T+E+L L+ L++ Sbjct: 181 LQLNTYGALLRLQRTAIGTHLLQNAKTIENLE----------------LNDLIL-DSIFF 223 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 + Y + L KNG + + + + N F+ +I DE + PR Sbjct: 224 ASYDELILNDYLIKLVKNGTYLDQRQIITQKPF-IVKDSNKNFVAYYDILDENKYYPR 280 >UniRef50_P59881 tRNA pseudouridine synthase B n=15 Tax=Cyanobacteria RepID=TRUB_PROMM Length = 320 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 92/323 (28%), Positives = 153/323 (47%), Gaps = 38/323 (11%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G +++DKP G++S+D + +++R++ R GH G LDP TG+LPI LG AT+ YL + Sbjct: 6 GFVVIDKPAGITSHDCVSRMRRVFGIKRVGHGGTLDPAVTGVLPIALGHATRLLPYLPGA 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR +LGQRT + D G ++ ++ + ++ A L+ FRG I+Q P SA+ Sbjct: 66 -KSYRGSIQLGQRTSSDDQQGDLISKQAWPELNTAEIEAYLEPFRGRIQQRPPQVSAVHV 124 Query: 132 QGKKLYEYARQGIEVPREARPITV--YELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 QG++ + AR+G + AR IT+ +LL + +++ +HCS GTYIR++ DLGE Sbjct: 125 QGERAHARARRGETMEIPARTITIDRLQLLNWNQQLGQIDFNVHCSSGTYIRSLARDLGE 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +GCGA + +L+R + ++ V L +D PA P ++P + + Sbjct: 185 LIGCGACLGWLKRTQALGFHEQQAVPLPD----------RDNPALTTP-PAVLPPLTALA 233 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTS-----------------------GAPLEGLVRVTEG 286 P + L + G + + V Sbjct: 234 HLPRLQLNEEEQESWSCGRRITAHQDQCQPAPKPLASDQQESAPNQTDPSANKSMLVVID 293 Query: 287 ENGKFIGMGEIDDEGRVAPRRLV 309 G+ GM +D V P+ + Sbjct: 294 CRGEVAGMAYWEDNATVKPKVVF 316 >UniRef50_C7MBA9 tRNA pseudouridine synthase B n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MBA9_BRAFD Length = 318 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 105/322 (32%), Positives = 160/322 (49%), Gaps = 31/322 (9%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 + P G +GVLL+DK G +S+D + +V+ + + GH G LDP+ATG+L + +G+ Sbjct: 8 AAPSAPGSAPHGVLLVDKAAGRTSHDVVARVRWLLGTKKVGHAGTLDPMATGLLVLGVGQ 67 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDI 119 T+ YL+ DK Y RLG+ T T D +G+ + E +A +++ L + RGDI Sbjct: 68 GTRLLTYLVGLDKTYEATIRLGRSTTTDDREGEPLGEIVDASGLTAAEISPHLASLRGDI 127 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITV--YELLFIRHEGNELELE--IHCS 175 Q+PS SA+K GK+ Y AR G +V ARP+TV +E R EG L+L+ I CS Sbjct: 128 AQVPSTVSAIKIDGKRAYARARAGEDVQLAARPVTVSRFEAGEARTEGEFLDLDAVIDCS 187 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 GTY+R + DLG LG G H+ LRR AV + V+ + +PA Sbjct: 188 SGTYVRALARDLGAALGMGGHLTALRRTAVGPFSVQDALR---------------VPARG 232 Query: 236 LLDPLLMPMD----SPASDYPVVNLPLTSSVYFKNGNPVRTSGA----PLEGLVRVTEGE 287 D + +P+ A PV+ + + G +R+ A +G V + Sbjct: 233 EGDDVDLPLQGLGAVAARVLPVLEVDAAQAAALGTGQRLRSDAAGDCDEADGPVAALDAA 292 Query: 288 NGKFIGMGEIDDEGRVAPRRLV 309 G+ I + E + G P +V Sbjct: 293 -GRLIAILEREGAG-WRPVLVV 312 >UniRef50_P59880 tRNA pseudouridine synthase B n=2 Tax=Prochlorococcus marinus RepID=TRUB_PROMA Length = 313 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 86/315 (27%), Positives = 156/315 (49%), Gaps = 30/315 (9%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L+++KP G++S+D + +++RIY R GH G LDP TG+LPI +G+AT+ +L S Sbjct: 7 GFLVINKPAGLTSHDCVNRLRRIYGIKRIGHGGTLDPAVTGVLPIAIGKATRLLSFL-PS 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ-LAAALDTFRGDIEQIPSMYSALKY 131 K Y +LG T+T D G+ + E E + L+ F+G+I+Q P ++S++ Sbjct: 66 PKTYEGTIKLGISTNTDDLTGETISEHSWDQVKENSILNCLNKFQGEIKQCPPIFSSVHI 125 Query: 132 QGKKLYEYARQGIEVPREARPITVY--ELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G++ Y+ AR+G + I +Y +L+ + ++LE+HCS GTYIR++ D+G+ Sbjct: 126 NGERAYKKARRGEFFELPPKLIKIYRIKLINWNKKDGTIDLEVHCSPGTYIRSLARDIGK 185 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCG + L R + +++ + L L + +L P+++ S Sbjct: 186 KLGCGGALAKLNRTMALGFNIDQAIELPDLDK-----------NNDLNKPMIIDPLKALS 234 Query: 250 DYPVVNL-PLTSSVYFKNGNPVRTSGAPLEGLVRVTEGEN-------------GKFIGMG 295 P + L + ++ G + S + L+ + + E + IG+ Sbjct: 235 HLPSIKLMTIDELSSWRKGKHLILSKSRLKNPLYLIEDDKDIPKTFLTVINNENHLIGLA 294 Query: 296 EIDDEG-RVAPRRLV 309 E ++ P+ + Sbjct: 295 RWHHEPFKIEPKIVF 309 >UniRef50_D2R9Q7 tRNA pseudouridine synthase B n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9Q7_GARVA Length = 367 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 159/353 (45%), Gaps = 53/353 (15%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+LL+DKPQG++S+D + + + + R GH G LDP+ATG+L I G AT+ Y+L Sbjct: 6 SGLLLVDKPQGVTSHDIVACARHLLHTKRVGHAGTLDPMATGLLIIGFGNATRLLNYMLG 65 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEER-----------------PVTFSAEQLAAAL-D 113 +K Y + RLG+ T T DA+G+I+ + + S E++ + + Sbjct: 66 HNKTYEAVIRLGEATTTDDAEGEILPDDALNIGPGVHVANKDMSFEKSLSFERIKQVVSE 125 Query: 114 TFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--------- 164 G I Q P+ +SA+K G++ Y+ AR+G V R I V + Sbjct: 126 NLVGKIMQAPTAFSAIKINGQRAYDLAREGKSVEIAPREIFVSDFSVSNPRITRGVSGKL 185 Query: 165 GNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLE---HLRE 221 ++ ++ CS GTYIR + DLG LG G H+ LRR +V + V L+ +RE Sbjct: 186 VCDISAKVSCSSGTYIRALARDLGRLLGVGGHLTQLRRTSVGDFSVTDSRVLKLRSQMRE 245 Query: 222 LVE-----QAEQQDIPAAELLDPLLMP------MDSPASDYPVVNLPLTSSVYFKNGNPV 270 + Q + +P+ + ++P MD+ + P +++ + + G + Sbjct: 246 FTDRNGVLQHRSKAVPSDDFDANNMLPKICLNMMDAASHSLPTLSIDENQAKDLRFGRWI 305 Query: 271 RT------SGAPLEGLVRVTEGENGKFIGMGEIDDE---GRVAPRRLVVEYPA 314 P V E + + E+ ++ P +V +PA Sbjct: 306 ELKSGINYENYPAIAYVPNANTEECDVVAVVELTKNIKSNQIKP---IVVFPA 355 >UniRef50_B1MZH0 tRNA pseudouridine synthase B n=3 Tax=Leuconostoc RepID=B1MZH0_LEUCK Length = 315 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 90/290 (31%), Positives = 142/290 (48%), Gaps = 18/290 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV++++KP+G++S D + KV+R + GH G LDP +G+L + LG+ATK L Sbjct: 20 VDGVIVINKPRGVTSFDVVAKVRRAIGQKKVGHAGTLDPDVSGVLVVALGKATKLIDELQ 79 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQIPSMYSA 128 KRY LG T+T D G+I+ E+ V +S +Q+ A+ + G I+Q+P MYSA Sbjct: 80 SRPKRYVGDITLGFATETEDLSGEIISEKEITVPYSDQQIDEAIQSLNGSIKQVPPMYSA 139 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYE-----LLFIRHEGNELELEIHCSKGTYIRTI 183 +K GK+LYEYAR V R R +Y+ L+ H+ + + E SKGTYIRT+ Sbjct: 140 VKVAGKRLYEYARAVETVTRPIREAHIYDFHRTSLVDYAHQQQKFDFEATVSKGTYIRTL 199 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D G +LG A + L R+ S + + + L + A + ++P Sbjct: 200 AVDTGRQLGMPATMTRLERVMGSGMTLSQAIELNDVMTWPRTA----------ILEKVIP 249 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIG 293 + ++P+ L KNG + A L + E Sbjct: 250 ISKLL-NWPIKPLTDDEWFAVKNGQVITQWPADDNYLQLTYQDEVKAVYA 298 >UniRef50_D0MI93 tRNA pseudouridine synthase B n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI93_RHOM4 Length = 249 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 133/223 (59%), Gaps = 1/223 (0%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 PR R VLL+DKP+G++S D +++++++ + GH G LDP+ATG+L +G AT Sbjct: 17 PRLPERWDAAVLLIDKPKGITSFDVIRRLRKLLRVRKIGHAGTLDPMATGLLICLIGRAT 76 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQI 122 ++ + + +K Y + RLG+ T + DA+ ++VE R + L F G+I Q Sbjct: 77 RWMTHFMAQEKEYEGVMRLGEITPSYDAETEVVERRSWEHLTDADLERVRHQFVGEIVQQ 136 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 YSA+K +GK+LYE AR G V R +R + +Y + +G ++ + CSKGTYIR+ Sbjct: 137 VPAYSAVKVKGKRLYEQARAGKAVERPSRRVQIYAFELLGRDGADVAFRVRCSKGTYIRS 196 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 ++ D G+ LGCGAH++ LRR Y VE+ TLE L E ++ Sbjct: 197 LVHDFGQALGCGAHLVELRRTRSGPYRVEQAWTLEALAEALQA 239 >UniRef50_Q6AJY7 tRNA pseudouridine synthase B n=1 Tax=Desulfotalea psychrophila RepID=TRUB_DESPS Length = 246 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 94/237 (39%), Positives = 137/237 (57%), Gaps = 8/237 (3%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQYLLD 71 G+ L+DKP G++S + +V+RI + GH G LDP ATG+L +C G ATK +D Sbjct: 9 GIFLIDKPVGITSFGVVSRVRRILGMKKVGHAGTLDPFATGLLVVCAGRPATKMISSFMD 68 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y LG T+T D +G + + V F AE + L F+G Q+P YSALK Sbjct: 69 GEKEYIATLCLGVETETQDPEGAEIARKQVGFLHAETIETCLAGFKGTQMQVPPAYSALK 128 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLF-----IRHEGNELELEIHCSKGTYIRTIID 185 +QGK LY YAR+GIEV ++AR ITV+E+ + + L + + CSKG+YIRT+ Sbjct: 129 HQGKPLYYYARKGIEVKKDAREITVHEIERLGEGDLEGDHPSLVIRVRCSKGSYIRTLGS 188 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVT-LEHLRELVEQAEQQDIPAAELLDPLL 241 D+G+ LGCGAH+ LRR + VE +T ++ L E + + + + E + LL Sbjct: 189 DIGKVLGCGAHLTDLRRTKSGFFNVEDALTDVDMLAEDAHERFMKKVLSVESVGKLL 245 >UniRef50_A4XL67 tRNA pseudouridine synthase B n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=TRUB_CALS8 Length = 287 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 144/284 (50%), Gaps = 23/284 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+LL+DKP G++S+D ++ V++++ + GH G LDP A+G+L + +GEATK S + Sbjct: 1 MNGILLVDKPVGLTSHDVVEYVRKLFKT-KVGHCGTLDPFASGLLVLLIGEATKLSSFFT 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y + G +TDT D G++ + ++ L +G++E +YSA K Sbjct: 60 QTKKTYIATMQFGIKTDTLDITGKVQLRNNIFIEQNEIEDCLKDLKGEVELSVPIYSAKK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +G+KLYEYAR+GI++ +Y + I + + ++ CS GTYIR++ +++ +K Sbjct: 120 VKGRKLYEYAREGIDIEIPKIKSIIYSIEMINYCYPYMTFKVECSHGTYIRSLAEEIAKK 179 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L A ++ LRR + ++ +L+ + E ++P+++ + Sbjct: 180 LSTVATLVQLRRAKNGVFDIKAAFSLDFISE-----------------DSIIPLENLILN 222 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGM 294 + + + NGNP+ +R+ + F + Sbjct: 223 --EIIVNESVYKKLINGNPLTRKDIKE---IRLNDSLFEDFYKI 261 >UniRef50_B9MR51 tRNA pseudouridine synthase B n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR51_ANATD Length = 290 Score = 276 bits (707), Expect = 5e-73, Method: Composition-based stats. Identities = 89/297 (29%), Positives = 144/297 (48%), Gaps = 36/297 (12%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVLL+DKP G++S+D ++ V++++N +AGH G LDP ATG+L I LGEATK S + Sbjct: 1 MNGVLLVDKPVGITSHDVVEFVRKVFNV-KAGHAGTLDPFATGLLVILLGEATKLSSFFT 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y + G RTDT D G+I E+ V +++ +G+IE ++SA K Sbjct: 60 SQEKTYIATMQFGIRTDTLDITGKIKEKNSVIVEEKEIEECFKILKGEIELKVPIFSAKK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+KLYEYAR+GI + +Y + I LE ++ CS GTYIR++ + + E Sbjct: 120 LNGRKLYEYARKGINIEIPKVKSIIYNIEIINFSYPYLEFKVQCSHGTYIRSLAEKIAEN 179 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L + LRR+ + ++ VTL +R ++P+ + Sbjct: 180 LSTVGLLSELRRIRSGFFDLKDAVTLSDIRA-----------------ESIIPVCRLFKN 222 Query: 251 YPVVNLPLTSSVYFKNGNPVRTS----------------GAPLEGLVRVTEGENGKF 291 + + + NGNP+ ++ +V + + EN F Sbjct: 223 --EIKVGRKTYKKILNGNPLVNQDIEDIIDIDTVFADFYKIWVDKVVFIYKRENDVF 277 >UniRef50_Q6MMS4 tRNA pseudouridine synthase B n=1 Tax=Bdellovibrio bacteriovorus RepID=TRUB_BDEBA Length = 308 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 18/307 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+LL+DKP G+SS+D + +++RI + GH+G LDP+A+G++ + E TK SQY+L+ Sbjct: 8 NGLLLVDKPSGISSHDVVARLRRILSTRAVGHSGTLDPMASGLMACLVNEGTKLSQYILE 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSALK 130 DK YR+ A+ G RTDT D G+ +E RP + E + + +G++E +YSA+K Sbjct: 68 GDKGYRLRAQFGIRTDTLDTTGETLETRPTDHLTRELILSEALKLQGEMEVEVPIYSAIK 127 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 QGKKLYEYAR EV + + +++ + + E +I CSKG+YIRT ID LG+ Sbjct: 128 VQGKKLYEYARGEQEVTIPKKVMKFWDIEPVEIGSDWAEFDIKCSKGSYIRTWIDLLGKA 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + LRR S Y +++ TLE + V+ L P +PM+ Sbjct: 188 LGCGAAMSGLRRTWSSPYKIDQAQTLEQIEASVKGGS---------LGPAFVPMELALPQ 238 Query: 251 YPVVNLPLTSSVYFKNGNP--------VRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 + + V NG + ++ ++V E G+ + + ++ Sbjct: 239 VKRIRIKGQDKVLLGNGQISHDLRSQLISAFNPDVDQYIQVLAQEGGELLAVIGLEPGRG 298 Query: 303 VAPRRLV 309 RR+ Sbjct: 299 FVLRRVF 305 >UniRef50_B6AR13 tRNA pseudouridine synthase B n=2 Tax=Leptospirillum sp. Group II RepID=B6AR13_9BACT Length = 325 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 101/295 (34%), Positives = 151/295 (51%), Gaps = 20/295 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ L+DKP GM+S+D + V++ R GH G LDP+ATG+LP+ +G++T+ ++ + Sbjct: 14 SGMFLVDKPAGMTSHDVVDSVRKNLGFPRVGHGGTLDPMATGVLPVFVGKSTRLAEMIHG 73 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK YR R G TDT D++G+++ E +L L F G Q P MYSA+K Sbjct: 74 YDKTYRFDVRFGVTTDTGDSEGKLLTEIKFDQLDRVKLKGVLQDFTGVRLQKPPMYSAVK 133 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLF--IRHEGNELELEIHCSKGTYIRTIIDDLG 188 G LY AR+GIEV REAR I +Y L + +G + CSKGT++RTI +++G Sbjct: 134 KNGTPLYRLARKGIEVEREARRIEIYSLEMLTVSPDGKTASFRVKCSKGTFVRTIAEEIG 193 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 E +G G HV+ L R + VE V+L L + E L L Sbjct: 194 EAIGLGGHVVSLCREEFGHFRVEDAVSLGDLISMD---------MEEGLSSCLWSPSRIL 244 Query: 249 SDYPVVNLPLTSSVYFKNGNPV------RTSG-APLEGLVRVTEGENGKFIGMGE 296 +P + + G + RTSG L +VR+++ GK I +G+ Sbjct: 245 ESFPEIRILDAHLPDIYRGARIPAFQIYRTSGLFNLSEMVRISD-RKGKCIAVGK 298 >UniRef50_Q72ER4 tRNA pseudouridine synthase B n=10 Tax=Desulfovibrionales RepID=TRUB_DESVH Length = 304 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 85/261 (32%), Positives = 133/261 (50%), Gaps = 14/261 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL- 70 +G+L+LDKP G SS + KVKR + GH G LDP+A G+L + LG ATK S +L+ Sbjct: 6 HGLLVLDKPSGPSSAQCISKVKR-LGQKKIGHAGTLDPMAGGVLLVLLGHATKISGHLMA 64 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 D +K Y RLG+ TDT DA+G + P + + A +D++ G EQ YSA Sbjct: 65 DGEKVYAGTLRLGETTDTWDAEGTVTATAPWHHVTEADVRAIVDSWLGSSEQEVPPYSAA 124 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K+QG+ LY+ +R G E P + + + + + + + + CS GTYIR++ LG Sbjct: 125 KHQGQPLYKLSRAGRETPVKTKTVEISLAEVVWCDLPHVRFRVRCSSGTYIRSLAHSLGI 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LGCGA + L R + ++ TL+ + + L ++P+ Sbjct: 185 RLGCGAVLTELTREYSHPFGLDMAHTLDAV-----------LAEPGRLAERVIPITHALP 233 Query: 250 DYPVVNLPLTSSVYFKNGNPV 270 +P V + L +NG P+ Sbjct: 234 HWPKVGISLQQEASVRNGIPL 254 >UniRef50_Q0WVR7 tRNA synthase-like protein n=10 Tax=Magnoliophyta RepID=Q0WVR7_ARATH Length = 540 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 121/218 (55%), Gaps = 4/218 (1%) Query: 12 NG-VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 NG VLL++KP+G +S K++R+ + GH G LDP+ATG+L +C+G+ATK Sbjct: 320 NGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQ 379 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y + RLG+ T T DAD +++ + + AL +F G+I Q+P M+SA+ Sbjct: 380 GMIKGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAI 439 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDL 187 K G+K+YE AR+G V R I++++ R + L + CSKGTYIR++ DL Sbjct: 440 KVGGEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADL 499 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 + LG AH+ LRR ++ +Y L + + Sbjct: 500 AKALGSCAHLTALRRDSIGEYSANDAWEFNELEAAITK 537 >UniRef50_B2UQ50 tRNA pseudouridine synthase B n=3 Tax=Verrucomicrobia RepID=B2UQ50_AKKM8 Length = 244 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 132/232 (56%), Gaps = 1/232 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVLL+DK + M+S+D + +R + GH G LDP+ATG+L + +G+ATK L+ Sbjct: 11 SGVLLIDKARDMTSHDVVAIARRSLGIKKIGHCGTLDPMATGLLMLVVGKATKLQDKLMC 70 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y LG T + DA G+IV E V + + + A D F G EQIP M SA+K Sbjct: 71 EHKEYAGTLMLGVETSSQDAMGEIVAEYSVDGVTEQAVREAFDRFDGAFEQIPPMVSAIK 130 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G LY+ AR+G E+ RE RP+ V+ R E++ + CSKG Y+R+ D+G+ Sbjct: 131 KDGVPLYKLARKGQEIVREPRPVEVFGHGISRVAIPEVDFTVQCSKGFYVRSYAYDIGKA 190 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 LGCGAH+ LRR + ++R +T++ L+ + + + + + L +L+ Sbjct: 191 LGCGAHLSALRRTRSGSFTLDRAITVDTLKTAPREELFRAMLSLKELADILI 242 >UniRef50_C7N8V4 tRNA pseudouridine synthase B n=1 Tax=Leptotrichia buccalis C-1013-b RepID=C7N8V4_LEPBD Length = 355 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 99/296 (33%), Positives = 162/296 (54%), Gaps = 28/296 (9%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++LL+K +G+SS A+ ++KR A +AGH G LDP+A G++ + + +ATKFS L+ Sbjct: 8 DGIILLNKSKGISSFKAIDELKRKIKAKKAGHAGTLDPMAEGLMVVMINDATKFSGDLMK 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y V LG +TDT D++G+++EE + S Q+ + +F+G I+Q+P MYSA+ Sbjct: 68 KDKEYYVEMELGYKTDTYDSEGKVIEEYKSEIELSDSQIIRTIHSFKGRIKQVPPMYSAI 127 Query: 130 KYQGKKLYEYARQGIEVPREARPIT---VYELLFIRHEGN----ELELEIHCSKGTYIRT 182 K +G+KLY+ AR+GIE+ R R + +Y++ R + N ++ H S GTYIR+ Sbjct: 128 KVEGQKLYDLARKGIEIERMPRDVEIMNIYKIKIHRPKENSSRIKISFYAHVSSGTYIRS 187 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH-------LRELVEQAEQQDIPAAE 235 ++ D+GEKL A + L R + + +E V+LE L+ELVE+ + + A Sbjct: 188 LVHDIGEKLKVFATMTKLVRTKIGRLSIEDAVSLEEVQSEIGKLKELVEEKRENESFWAT 247 Query: 236 LLDPLLMP-----------MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 D + ++ DY +N+ KNG V + E + Sbjct: 248 KSDAAIRAEKIREIVCFVEIEYIL-DYYGINVSNEKYGKLKNGMTVIDTFKKFENI 302 >UniRef50_D2Q8K5 TruB tRNA pseudouridine synthase B n=6 Tax=Bifidobacterium RepID=D2Q8K5_9BIFI Length = 362 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 101/356 (28%), Positives = 160/356 (44%), Gaps = 54/356 (15%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 + +I+G+L++DKPQG++S+D + ++ + R GH G LDP+ATG+L I G AT+ Sbjct: 4 KKPEISGLLVVDKPQGVTSHDVVAAIRGALHMKRVGHAGTLDPMATGVLVIGFGNATRLL 63 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVE----ERPVTFSAEQLAAALD-TFRGDIEQ 121 Y++D K Y RLGQRT T DADG+++E S E + + F G IEQ Sbjct: 64 NYIVDHSKTYLATIRLGQRTATDDADGELLEPSAPIAEAFPSRETVERVIAERFTGRIEQ 123 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN--------------- 166 +P+ YSA+K G++ Y+ AR+G +V +ARP+TV E Sbjct: 124 VPNSYSAIKINGQRAYDLAREGKQVELKARPVTVEEFRVDAVRYGYASTRFADAPLTDAQ 183 Query: 167 ---------------------ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAV 205 EL++ + CS GTYIR + DLGE LG G ++ LRR+ + Sbjct: 184 DIGAGERWHPVSAAPDVRPVMELDVAVSCSAGTYIRALGRDLGEALGLGGYLTMLRRIRI 243 Query: 206 SKYPVE--RMVTLEHLRELVEQAEQQDIP--------AAELLDPLLMPMDSPASDYPVVN 255 + +VT + E ++ A L D L +DS + P++ Sbjct: 244 GDFTETMPNIVTAHTESKTFTNREGAEVTRNRAVIDDAEHLTDRALGMVDSAKASMPMLR 303 Query: 256 LPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVE 311 + + + G + + E G + + E G P + V+ Sbjct: 304 ISDQEATDLRFGRRIAHD---IRETTAAYVPETGDLVAIIERAKRGEAKPVAVFVQ 356 >UniRef50_B3CTX3 tRNA pseudouridine 55 synthase n=2 Tax=Orientia tsutsugamushi RepID=B3CTX3_ORITI Length = 302 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 88/305 (28%), Positives = 139/305 (45%), Gaps = 12/305 (3%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 ING + L KP G+SS A+ K+K N ++ GH G LD A G+LPI +GEATK Q Sbjct: 2 KSKINGWINLYKPAGISSAQAVAKIKHWLNLSKVGHAGTLDVEAEGVLPIAIGEATKLVQ 61 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYS 127 YL+++ K Y + G +TD+ D G++V+ + ++ + F G+I Q+P YS Sbjct: 62 YLMEATKEYHFTMKFGAKTDSGDVSGKVVQVTSNIPTYDECLSVTKKFIGEIVQVPPSYS 121 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL--ELEIHCSKGTYIRTIID 185 ALK G + Y AR G +V R + ++ L ++ L CSKGTYIRT+ Sbjct: 122 ALKINGIRAYNLARSGHKVILSPRKVKIFSLKLESYDSINLTATYSTECSKGTYIRTLSQ 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVER-MVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+ L + V+ L R V + + + L L L +M Sbjct: 182 DIALCLQSLSFVVKLARTRVGCFNYKHGSLYLNALNSF------SFAKTIACLKDGIMDT 235 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 S+ P +++ + G V+ LV N + I +G+++D G Sbjct: 236 KCVLSNIPSLSIDDVVARKIYFGQLVQLPRLHNCSLV--WLQYNNQLIAIGKMED-GYFR 292 Query: 305 PRRLV 309 ++ Sbjct: 293 SSKVF 297 >UniRef50_C0W0C7 Possible tRNA-pseudouridine synthase I n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0C7_9ACTO Length = 339 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 95/317 (29%), Positives = 152/317 (47%), Gaps = 28/317 (8%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 PR +G+++++KP G++S+D + +R+ + GH G LDP+ATGML I +G+AT Sbjct: 21 PRAETTAADGLIIINKPAGVTSHDVVSASRRLSATRKVGHAGTLDPMATGMLIIGVGKAT 80 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA-----EQLAAALDTFRGD 118 + Y+ +DK Y +LG TD+ DADG+I + + +++ A + F GD Sbjct: 81 RLLHYITGADKGYLARIQLGVSTDSDDADGEITAVNSIPGTRLFGLTKEIDAQMRYFVGD 140 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR-------------HEG 165 I Q P+ SA+K GK+ + R G E+ ARP+ V + + + Sbjct: 141 IMQRPTTVSAIKVNGKRAHALHRAGEEIELAARPVHVAKFARMSEVEFVEVTLDDEPYTF 200 Query: 166 NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 E ++ + CS GTY+R + DLG LG GAH+ +L R V + +M L + E Sbjct: 201 AEFDVVVECSSGTYVRALARDLGAALGLGAHLTHLHRYRVGSWTASQMRELTDISA--EV 258 Query: 226 AEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTE 285 AE + L D L +Y + L ++ NGN R + + + V Sbjct: 259 AENGQVQVISLTDACL-------QEYDGLELNEVQAIALCNGNTTRLTADATKSPI-VAA 310 Query: 286 GENGKFIGMGEIDDEGR 302 NG+ G+ E D G Sbjct: 311 LYNGQVRGLLERDGNGY 327 >UniRef50_Q2J732 tRNA pseudouridine synthase B n=1 Tax=Frankia sp. CcI3 RepID=Q2J732_FRASC Length = 327 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 100/313 (31%), Positives = 155/313 (49%), Gaps = 29/313 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++++DKP G +S+D + + +RI R GH G LDP+ATG+L + G T+ +L Sbjct: 33 VDGLVVVDKPAGWTSHDVVARARRILGQRRIGHAGTLDPMATGVLVLGAGRGTRLLGHLA 92 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +DK Y RLG+ T T DA+G VE+RPV A++L A+ G ++Q+P+ SA+K Sbjct: 93 LTDKVYDATIRLGRTTTTDDAEGAPVEDRPVDVDADRLTRAMAALTGVLDQVPASVSAVK 152 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELL----------FIRHEGNELELEIHCSKGTYI 180 G + Y R G V R +TV+ + G +LE+ + CS GTY+ Sbjct: 153 VGGVRAYARVRAGEVVDLAPRRVTVHRFDLLARRAAGDGAVDPAGTDLEVTVGCSSGTYV 212 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + DLG L CGAH+ LRR AV + + VTL+ EL +A Sbjct: 213 RALARDLGAALDCGAHLTALRRTAVGPFDLAGAVTLDTFAELGPRAVTSLT--------- 263 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 D+ A+ + ++ ++ +G + G P G V G +G + + E + Sbjct: 264 ----DAVAAGFLRRDVTAEAAADVSHGRRLPPVGRP--GTYGVF-GPDGTVLALVEETEH 316 Query: 301 GRVAPRRLVVEYP 313 A R LVV P Sbjct: 317 ---AVRSLVVFAP 326 >UniRef50_C5NXZ4 tRNA pseudouridine synthase B n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXZ4_9BACL Length = 307 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 92/300 (30%), Positives = 153/300 (51%), Gaps = 24/300 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + K +G++S+D + KV++I + GH+G LDP G+L + LG ATK S Y +D Sbjct: 4 GILPIYKERGVTSHDVVFKVRKILQMKKIGHSGTLDPEVDGVLLLLLGGATKVSDYAMDL 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR LG +T T D G+IV++ V+ + ++L L + G+IEQ P +YSA+K Sbjct: 64 GKSYRAEVCLGLKTTTEDLTGEIVDDCKVSNINIDELKEILSSMIGEIEQTPPIYSAIKV 123 Query: 132 QGKKLYEYARQGI-EVPREARPITVYEL------LFIRHEGNELELEIHCSKGTYIRTII 184 G+KLYEYAR+G +V R + +Y++ + + + ++I C KGTY+RTI Sbjct: 124 NGRKLYEYARRGQFDVEIPTRKVNIYDITFIENSEYYKDDRFYFSIDISCGKGTYVRTIA 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +GEKL + + L R + +E + L + + V+ L+ L+ Sbjct: 184 TSIGEKLNLPSTMSKLTRTRSGEITLENCLKLSEVEQKVQDGS---------LEQSLLRK 234 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP----LEGLVRVTEGENGKFIGMGEIDDE 300 + ++ V +P + NG R + P +G+V E E I + + D+ Sbjct: 235 EYALEEFQFVEIPKFRAKQVMNGLRFRKNQFPDYDFTDGIVFTYENEA---IAIYHLKDK 291 >UniRef50_D1AL32 tRNA pseudouridine synthase B n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL32_SEBTE Length = 280 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 91/296 (30%), Positives = 151/296 (51%), Gaps = 24/296 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++LL+K + +SS A+ +K + GH G LDPLA G++ + + ATK S LL Sbjct: 1 MDGIILLNKEKDISSFKAINNLKYKLKLKKVGHAGTLDPLAEGLMIVLVNNATKLSDMLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG TDT D G+ + ++ E++ L+ F+G+ EQ P MYSA Sbjct: 61 KQSKEYYAECELGYETDTYDCTGEKTQVYDGEISVDKEKITDILEDFQGEYEQTPPMYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K GKKLY+ AR+GIEV R+++ + + + I GN++ IH GTYIR++I D G Sbjct: 121 IKINGKKLYDLARKGIEVERKSKTVNIEYINRISINGNKIGFYIHAGSGTYIRSVIQDFG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +LG A + L R + K+ +E + + + D +L+ ++ Sbjct: 181 RRLGTYATMTKLIRTKIGKFSLENAYREKEISD----------------DSVLLSVEKIF 224 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 DYP +++ KNG ++ + G + NG++ G+G I +G + Sbjct: 225 -DYPALDVTDEECFKMKNG--IKLNKEIPVGYYSIYN--NGEYKGIG-ISADGILK 274 >UniRef50_Q46JB9 tRNA pseudouridine synthase B n=2 Tax=Prochlorococcus marinus RepID=TRUB_PROMT Length = 314 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 79/315 (25%), Positives = 155/315 (49%), Gaps = 28/315 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G +++DKP G++S+D + ++++++ + GH+G LDP TG+LPI +G+AT+ YL S Sbjct: 6 GFVVIDKPSGLTSHDCVNRLRKVFGIKKIGHSGTLDPAVTGVLPIAIGDATRLISYLQGS 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ-LAAALDTFRGDIEQIPSMYSALKY 131 K YR I +LG T+T D G+I+E + + + L+ FRG+I Q P ++S++ Sbjct: 66 -KAYRGIIQLGATTNTDDMQGEIIESKAWPLITQNYINYLLENFRGEILQKPPIFSSVHI 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYE--LLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 +G++ Y+ AR+G + + +T+ + L+ + EL +++ CS GTYIR++ D+G+ Sbjct: 125 KGERAYKKARKGEKFDLIPKKVTINKLNLISWSQDKGELLVDVDCSTGTYIRSLARDIGD 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 K+GCG ++ LRR + V L + + ++ + + L + Sbjct: 185 KIGCGGYLKSLRRTKAYNFIENHSVKLPEKSDFYPEGDKPKVLNPNIFFKHLSSFEL--- 241 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVR---------------VTEGENGKFIGM 294 + + +++G + V + + K +G+ Sbjct: 242 ------ISEEEIISWRSGRKISFQNNVKRLKVTKNNEVEDSFIHNNHILVLNKENKILGI 295 Query: 295 GEIDDEGRVAPRRLV 309 +DD + P+ + Sbjct: 296 ACLDDSFAIKPKVVF 310 >UniRef50_C1E906 Predicted protein n=5 Tax=Eukaryota RepID=C1E906_9CHLO Length = 230 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 85/217 (39%), Positives = 121/217 (55%), Gaps = 6/217 (2%) Query: 14 VLLLDKPQGMSSNDALQKVK---RIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 VLL+DKP+G +S D + K + R + + GH G LDP ATG+L +C+G+ATK Sbjct: 2 VLLIDKPKGWTSFDVVGKTRWLSRRMGSKKVGHCGTLDPNATGLLILCVGKATKMVDSFT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y +LG+ T + D ++ E P S LAA GDI+QIP M+SA+ Sbjct: 62 GMDKVYTGTMKLGEGTPSQDCCEEVDERLPWEHVSDADLAAGAKAMEGDIKQIPPMFSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDL 187 K +G++LY+ AR+G V R+ R T+ R + + CSKGTY+RT+ DL Sbjct: 122 KVKGERLYKAARRGETVERKERACTINSFEVWRDKVDSQLAHFRVDCSKGTYVRTLAHDL 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 G LG AH+ LRR ++ ++ VE T+E L E E Sbjct: 182 GRNLGTVAHLTELRRESIGEHSVEDAWTVESLFEACE 218 >UniRef50_C1ZEI4 tRNA pseudouridine 55 synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEI4_PLALI Length = 313 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 81/263 (30%), Positives = 133/263 (50%), Gaps = 10/263 (3%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L + KP M+S D + K++R + GH G LDPLA G+L I +G AT+ ++++ Sbjct: 4 GFLNIHKPLRMTSRDVVSKIERAVRPLKVGHAGTLDPLAEGVLVIGIGPATRLTEHVQAL 63 Query: 73 DKRYRVIARLGQRTDTSDADGQI-VEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y LGQ T+T DA+GQ+ + + E + L F G I+QIP +SA+ Sbjct: 64 PKGYSATFHLGQTTETDDAEGQLSTQVDTQHLTRELIEQELTHFCGQIQQIPPRFSAVHV 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GK+ Y+ AR G + + + V++L ++ ++EL+I C GTYIR++ DLGEKL Sbjct: 124 AGKRAYDLARSGQDFELTPKTVEVHQLALTKYANPDIELQIECGSGTYIRSLARDLGEKL 183 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 CGA++ L R + + ++ + L+ L A+ L PLL+ ++ Sbjct: 184 QCGAYMSALTRTHIGPFHLDSALRLDSLPNGFSLAD---------LQPLLLHPMLAFTES 234 Query: 252 PVVNLPLTSSVYFKNGNPVRTSG 274 + V ++G + Sbjct: 235 QRWVATRQAVVDLQHGKNISGDA 257 >UniRef50_B9FM24 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9FM24_ORYSJ Length = 525 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%) Query: 19 KPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRV 78 KP G +S K++R+ N + GH G LDP+ATG+L +C+G+ATK K Y Sbjct: 314 KP-GWTSFTVCGKLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSG 372 Query: 79 IARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLY 137 + RLG+ T T DAD +++ P E + +FRG+I Q+P M+SA+K G+K+Y Sbjct: 373 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKVGGEKMY 432 Query: 138 EYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDLGEKLGCGA 195 + AR+G V R I++++ R + L + CSKGTYIR++ DLG+ LG A Sbjct: 433 DKARRGETVELSPRRISIHQFDIERSLEDRQNLIFRVICSKGTYIRSLCADLGKALGSCA 492 Query: 196 HVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 H+ LRR ++ + V + L E + + Sbjct: 493 HLTALRRDSIGDFSVNDAWSFAELEEQITKG 523 >UniRef50_B7ICP6 tRNA pseudouridine synthase B n=1 Tax=Thermosipho africanus TCF52B RepID=B7ICP6_THEAB Length = 306 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 88/290 (30%), Positives = 145/290 (50%), Gaps = 19/290 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L KP+G++S+D + ++++ + GH G LDP A G+L I + AT+ +YL Sbjct: 1 MVGFLNAFKPKGVTSHDVIDELRKKLKTKKIGHAGTLDPFAEGVLVIGISGATRLLEYLK 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + KRY V A LG T+T D GQ+ EER S +++ A+ F+G +Q+P YSA K Sbjct: 61 NEKKRYYVKAILGLITETFDITGQVKEERVCQKSNDEIKNAILAFKGKYKQVPPAYSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 Y G++LY+ AR+G + + +YE+ I+ E E+ S GTYIR++ D+G K Sbjct: 121 YNGERLYKLAREGKIISLPPVEVEIYEIENIKIVPPEFSFEVVVSPGTYIRSLCMDIGYK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + L R +V K+ ++ + L ++E + ++ ++ D Sbjct: 181 LGCGATAVELVRKSVGKFSIKDSINPFEL-------------SSEQIVNRILRVEEVL-D 226 Query: 251 YPVVNLPLTSSVYFKNG-NPVRTSGAPLEGLVR----VTEGENGKFIGMG 295 P V + NG P ++ R V NG+ + + Sbjct: 227 LPQVEIYKDYVEKIFNGVQPTMDFVKEIKDDFRKDQDVMLVCNGRLVAIA 276 >UniRef50_C9MUE6 tRNA pseudouridine synthase B n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MUE6_9FUSO Length = 358 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 89/300 (29%), Positives = 152/300 (50%), Gaps = 29/300 (9%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++LL+K +G+SS A+ +K++ A + GH G LDP+A G++ + + EATKFS L+ Sbjct: 8 DGLILLNKSKGVSSFGAINHLKKVIKAKKVGHAGTLDPMAEGLMIVMINEATKFSDNLMK 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y V LG +T T D +G ++ + + S ++ A+++F+G I+Q+P MYSA+ Sbjct: 68 KDKEYYVEMELGYKTGTYDLEGTVIAKYDSEINISDSEIIKAVNSFKGKIKQVPPMYSAI 127 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----------LELEIHCSKGTY 179 K +G+KLY+ AR+GIEV R R + + E+ I+ + + + S GTY Sbjct: 128 KIEGQKLYDLARKGIEVERAERDVEISEIREIKVIRPDKNSENVQNIKISFYVKVSSGTY 187 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLE-----------------HLREL 222 IR+++ D+GEKLG A + L R + ++ +E ++LE Sbjct: 188 IRSLVYDIGEKLGVFATMTRLVRTKIGRFEIEDAISLEKAKAEIDKLKNLMEGKTENESF 247 Query: 223 VEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVR 282 I A ++ + + DY +N+ KNG V + E + + Sbjct: 248 WATKNDSAIRAEKIREIVCFVEIEYVLDYYGINVSNVKYGKLKNGMTVIDTFKKFENISK 307 >UniRef50_C2BRN4 Possible tRNA-pseudouridine synthase I n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BRN4_9ACTO Length = 368 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 93/321 (28%), Positives = 154/321 (47%), Gaps = 31/321 (9%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP+G+SSN +++R+ + G+ G LDPLATG+L +G+AT+ QYL Sbjct: 38 GLVIVDKPRGLSSNAVASRIRRLAGQKKVGYAGTLDPLATGILICAIGKATRLLQYLTAH 97 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 DK Y R G TDT DA GQ++ S ++ AAL+ +RG ++QIP+ +SA+K Sbjct: 98 DKVYTARVRFGISTDTDDALGQVLSRAGAALSTAEITAALEPWRGAVDQIPAKFSAIKIG 157 Query: 133 GKKLYEYARQGIEVPREARPITVYELL-----------FIRHEGN----ELELEIHCSKG 177 GK+ Y+ AR G V + RP+T++ L + ++ + CS G Sbjct: 158 GKRAYDLARAGKNVEIQPRPVTIHRLELRGAPVLETVAGDDSNPPVQVTDADIVVGCSAG 217 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TY+R++ DLG LG GAH+ LRR++V Y +++ +L + + + L Sbjct: 218 TYVRSLARDLGADLGVGAHLTALRRISVGSYGLDQAHSLSEFE---TEVRRYGVLRPLGL 274 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT-------SGAPLEGLVRVTEGENGK 290 D ++ + ++P T G PLE +G Sbjct: 275 DAAILGI---FPEFPG---DETQVRALSFGQAPALRDSTHAAPNIPLETANSCPNASDGA 328 Query: 291 FIGMGEIDDEGRVAPRRLVVE 311 + + E E + +R+V Sbjct: 329 LVAVTEPVTETKAGDKRVVAL 349 >UniRef50_Q8CWM3 tRNA pseudouridine synthase B n=6 Tax=Cyanobacteria RepID=TRUB_THEEB Length = 287 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 99/306 (32%), Positives = 144/306 (47%), Gaps = 24/306 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L+KP G +S+D + +++R R GH G LDP+ATG+LPI LG AT+ YL Sbjct: 1 MFGFLNLNKPAGCTSHDCINELRRRLRLKRIGHGGTLDPMATGVLPIALGAATRLLPYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D K Y R G T T D G+I +E+ + + L F G+IEQ+P YSA+ Sbjct: 61 D-RKAYIGTVRFGMSTTTDDITGEICQEQGASHLTLAAIQEQLPQFIGEIEQLPPAYSAI 119 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---NELELEIHCSKGTYIRTIIDD 186 + G++LY AR G V R +TVY + + + EL L I C GTYIR + D Sbjct: 120 QVAGQRLYARARAGEVVSVPPRIVTVYRIEVLHWQPGRYPELTLHITCGSGTYIRALARD 179 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG LG G + L+R+ +E +LE + + +P L Sbjct: 180 LGTALGVGGTLAALQRIESGGLRIEESHSLESIA-------PEHLP--------LCSPQE 224 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGA-PLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 S P + L + +G V G P + V VT +G+G I R+ P Sbjct: 225 VLSHLPWLELNAAQLNDWYHGRAVICEGLPPADSCVGVTFAT--ACVGVG-ISGGDRLHP 281 Query: 306 RRLVVE 311 + ++ E Sbjct: 282 KVVLKE 287 >UniRef50_Q1NKV8 TRNA pseudouridine synthase B n=3 Tax=Deltaproteobacteria RepID=Q1NKV8_9DELT Length = 259 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 87/217 (40%), Positives = 127/217 (58%), Gaps = 4/217 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQYLLDS 72 V+ LDKP G SS +Q V+R + GH G LDP A+G+L +C+G AT+ + L+ Sbjct: 13 VIPLDKPVGPSSFRLVQLVRRALGIKKVGHAGTLDPFASGLLLVCVGRGATRLVERLMAG 72 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE-QLAAALDTFRGDIEQIPSMYSALKY 131 DK Y +LG TDT D +GQ+ VT +L L FRG+I Q+P +SA+K+ Sbjct: 73 DKEYLATLQLGVATDTHDREGQVTATEEVTHEQLLRLQEVLFRFRGEILQVPPAFSAVKH 132 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLGE 189 QG+ LY YAR+G + + R + ++EL + + L + + CSKGTYIR++ ++G+ Sbjct: 133 QGRPLYAYARRGEIIEKPPRRVKIHELTPLELDRRQRRLVIRVRCSKGTYIRSLAHEIGQ 192 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 LGCGAH++ LRRLA + VE V + L E A Sbjct: 193 SLGCGAHLLELRRLASGPFRVEEAVPGDLLAEPATAA 229 >UniRef50_D0NZ97 tRNA pseudouridine synthase B, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NZ97_PHYIN Length = 319 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 151/335 (45%), Gaps = 51/335 (15%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP G++S+ + ++R+ + + GH G LDP+ATG+L + +G AT+F QYL Sbjct: 1 MSGFLNVRKPAGLTSHRCVGVMRRVLDTRQVGHGGTLDPMATGVLMLAVGRATRFLQYLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K YR RLG TD+ D G + + P S E + L F G+I+Q+P SA+ Sbjct: 61 -TGKEYRGAIRLGITTDSDDITGDVRTQLPAPWISEEMVNMTLQRFIGEIDQVPPRVSAI 119 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G +LY+ AR + + R + + ++ + E+ GTYIR+I + GE Sbjct: 120 KKNGVRLYKLARAKKDFDVKPRRVCIKKIDVQSFTQGDFP-EV---GGTYIRSIARECGE 175 Query: 190 KL--------------------GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 L G + L R + + + + +R ++E+ E Sbjct: 176 ALIVPPEYLDSTCKLRNSVGDFCVGGTLTELERTRSGAFAIADSLDFDEIRSMLERGESP 235 Query: 230 DIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE----GLVRVTE 285 L P+++ P LPL ++ Y+ NG V +E ++T Sbjct: 236 -----------LQPIENMLQHLPSAELPLQTAQYWLNGGTVTIPAEDIEFVDHNYYKLTS 284 Query: 286 GENGKF------IGMGEIDDEGRVAP----RRLVV 310 GE + +G+ ++D + + +RL + Sbjct: 285 GEPIRIYSSSTMLGIAQVDPQPQYKEVFLRKRLFI 319 >UniRef50_C4LJ77 tRNA pseudouridine synthase B n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJ77_CORK4 Length = 351 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 165/350 (47%), Gaps = 53/350 (15%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++++DKP GM+S+D + ++R+ + GH G LDP ATG+L + + TKF +L+ Sbjct: 5 SGIVIVDKPAGMTSHDVVSAMRRLMRTRKVGHAGTLDPAATGVLILGIERGTKFMTHLVA 64 Query: 72 SDKRYRVIARLGQRTDTSDADGQIV------EERPVTFSA-------------------E 106 + K Y RLG T T DA+G+ + EE + +A E Sbjct: 65 NTKSYDATIRLGFATTTDDAEGEPIPYPDDSEENSIQAAARPLISPSTRERLSLLLSKPE 124 Query: 107 QLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITV--YELLFIR-- 162 ++ A + GDI Q PS SA+K G++ Y+ R G EV RP+TV +++ +R Sbjct: 125 RIDRAREQLTGDIMQRPSSVSAIKVDGRRAYDRVRSGEEVSLPPRPVTVSTFDIRDMRTA 184 Query: 163 -------HEGNE------LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYP 209 ++G+E L++ + CS GTYIR + DLGE LG G H+ LRR V + Sbjct: 185 TIDSGDNNDGDEDVTVIDLDVTVDCSSGTYIRALARDLGEILGVGGHLTALRRTRVGSFS 244 Query: 210 VERMVTLEHLRELVEQAEQ----QDIPAAELLDPLLMPMDSPA-SDYPVVNLPLTSSVYF 264 ++ TL+ LR+ AEQ + + L +D +P+ +L + Sbjct: 245 LDDAKTLDQLRDEQSLAEQRIRDEQLTGETPRASLSYSLDQAITRSFPIRHLRDDEATAV 304 Query: 265 KNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA 314 G + S V G + + + +EG++A + + V PA Sbjct: 305 SMGKRIPASDLKD-----VYAGVSADGHAIALMKNEGKIA-KTVFVARPA 348 >UniRef50_C2CXC9 Possible tRNA-pseudouridine synthase I n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CXC9_GARVA Length = 400 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 89/351 (25%), Positives = 144/351 (41%), Gaps = 67/351 (19%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+LL+DKP+G++S+D + + + + R GH G LDP+ATG+L + G AT+ YLL Sbjct: 10 GILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGH 69 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFS-----------AEQLAAALDTFRGDIEQ 121 DK Y + RLG+ T+T DADG +V S E F G I Q Sbjct: 70 DKTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQ 129 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---------ELELEI 172 P+ +SA+K G + Y+ AR+G +V E R + +++ + N ++ I Sbjct: 130 TPTAFSAIKINGVRAYDLAREGKDVHLEPREVVIHDFSLLDARFNVGVSGAKVVDVRASI 189 Query: 173 HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTL---------------- 216 CS GTYIR + DLG LG G H++ LRR + ++ VE L Sbjct: 190 SCSSGTYIRALARDLGRVLGVGGHLVSLRRTRIGEFSVEDDRVLKLETRIRTFTDKNGVT 249 Query: 217 ------------EHLRELVEQAEQQDIPAAEL---------------LDPLLMPM-DSPA 248 + + + + A +L L ++ M +S Sbjct: 250 QTRAKAVVADRHDSVSDYFSDSVSNSSVACDLSGDSSCKKSAQKNYDLQNRVLSMFESAK 309 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG---LVRVTEGENGKFIGMGE 296 V + + + G + + V+ + E + + E Sbjct: 310 LTMQTVEISENQAKDLRFGRKIVIPAISEKNTIAYVKAEKDEQNDVVAVLE 360 >UniRef50_C8WI31 tRNA pseudouridine synthase B n=2 Tax=Coriobacteriaceae RepID=C8WI31_EGGLE Length = 340 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 94/238 (39%), Positives = 127/238 (53%), Gaps = 9/238 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R +R ++ V+ ++KP GMSS+D + + + I+ R GHTG LDP+ATG+LPIC+G Sbjct: 1 MPRVKRGLSGLSLVVGVNKPAGMSSHDVVNRCRSIFGERRVGHTGTLDPMATGVLPICVG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRG 117 AT+ YL DKRYRV G TDT DA G +V V E AA + + G Sbjct: 61 PATRLGAYLTGHDKRYRVSIAFGAGTDTDDAAGTVVRTGEVPDRVLDPEFAAAFVASLVG 120 Query: 118 DIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYEL------LFIRHEGNELELE 171 +Q+P YSA+K GKK YE AR G + R I VY+ E ++ Sbjct: 121 RRKQMPPAYSAIKVNGKKSYEAARAGNIIDLAPRDIEVYDARLLGVHEGDGEELPSWDVS 180 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 SKGTYIR++ D G LGC AHV L R + +E V+LE L +L ++A Sbjct: 181 FEVSKGTYIRSLARDAGVALGCPAHVAALERTELGLLTLEECVSLETLADLKDRAALD 238 >UniRef50_B0BXR2 tRNA pseudouridine synthase B n=16 Tax=Rickettsia RepID=TRUB_RICRO Length = 345 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 80/260 (30%), Positives = 128/260 (49%), Gaps = 12/260 (4%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 N L + KP+G+SS + VK+I + GH G LD A G+LP +GEATK + L+D Sbjct: 3 NYWLNIYKPRGISSAQLVSIVKKILGKTKIGHAGTLDVEAEGILPFAVGEATKLIRLLID 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K Y + G +T++ D G+++ + S E+ A F G + QIP +SALK Sbjct: 63 ARKTYIFTVKFGMQTNSGDCAGKVIATKDCVPSQEEAYAVCSKFIGSVTQIPPAFSALKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEI--HCSKGTYIRTIIDDLGE 189 G + Y+ AR+ +V + R IT+Y+L + + CSKGTYIRT+ +DL Sbjct: 123 NGVRAYKLAREEKKVELKPRNITIYDLKCLNFDEKNATATYYTECSKGTYIRTLAEDLAL 182 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 L VI LRR V + E + ++ E+ + A L+ + +++ Sbjct: 183 SLQSLGFVIELRRTQVGIFKEENAIRIKSPDEITKNA----------LEAKSIKIEAILD 232 Query: 250 DYPVVNLPLTSSVYFKNGNP 269 D V++ + + K G Sbjct: 233 DILVLDATDSQAQQIKYGQK 252 >UniRef50_A1R520 tRNA pseudouridine synthase B n=14 Tax=Actinomycetales RepID=TRUB_ARTAT Length = 311 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 74/212 (34%), Positives = 124/212 (58%), Gaps = 7/212 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++++DKPQG +S+D + +++R+ + GH G LDP+ATG+L + + +AT+ Y++ Sbjct: 2 LSGLVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIV 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y RLG+ T T DA+G++ E + + +A + G I+Q+PS SA+ Sbjct: 62 GTSKTYTATIRLGETTITDDAEGEVTEARTAAHITDDAVAVGVAALTGPIQQVPSSVSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFI---RHEGN---ELELEIHCSKGTYIRTI 183 K G++ Y R G EV ARP+T++ R +G ++++ + CS GTYIR + Sbjct: 122 KVNGERSYARVRSGEEVKLAARPVTIHRFDVHSITRIDGGRVVDVDVTVECSSGTYIRAL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVT 215 DLG LG G H+ LRR V Y +++ T Sbjct: 182 ARDLGNALGIGGHLTALRRTQVGPYSLDQART 213 >UniRef50_B8DW45 tRNA pseudouridine synthase B n=5 Tax=Bifidobacterium RepID=B8DW45_BIFA0 Length = 350 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 102/324 (31%), Positives = 156/324 (48%), Gaps = 26/324 (8%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +R + +NGVL++DKPQG++S+D + V+ + + GH G LDP+ATG L I +G Sbjct: 1 MGTGKRDAK-VNGVLIVDKPQGVTSHDIVAAVRAALHTRKVGHAGTLDPMATGALVIGVG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVE---ERPVTFSAEQLAAALD-TFR 116 AT+ QY+++ K Y R GQRT T DADG+ VE E V + EQ+ A+ + Sbjct: 60 HATRLLQYIVEHTKTYSATIRFGQRTTTDDADGEFVEREAEAAVLPTLEQVREAVANEYT 119 Query: 117 GDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---------E 167 GDIEQIP+ SA+K G++ Y+ AR+G V +AR +TV+ + + Sbjct: 120 GDIEQIPNAVSAIKVNGQRAYDLAREGRHVELKARRVTVHAFDVLGGRQTQAANGTPVLD 179 Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERM-----------VTL 216 +++ + CS GTYIR + DLG CGAH+ LRR AV + V Sbjct: 180 VDVRVTCSAGTYIRALARDLGNDFHCGAHLTRLRREAVGAFRVRDARIVRAHAEARTFVN 239 Query: 217 EHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP 276 E+ D +L LL + + PV+ + + + G + + AP Sbjct: 240 RDGEEITRNRAVLDCVGEDLAGHLLTMVQAAQLTLPVLAVSEAQAADLRFGRRI-VAQAP 298 Query: 277 LEGLVRVTEGENGKFIGMGEIDDE 300 + + +G D E Sbjct: 299 TDDERPAHHHGEHVWAAIGSADGE 322 >UniRef50_C7NH20 tRNA pseudouridine 55 synthase n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NH20_KYTSD Length = 348 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 95/292 (32%), Positives = 144/292 (49%), Gaps = 26/292 (8%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSRP +G+L+LDKP G +S+D + + + + + GH G LDPLATG+L + +G Sbjct: 1 MSRPAPAP---DGLLVLDKPSGPTSHDIVSRCRWLCATRKVGHAGTLDPLATGVLLVGVG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT------FSAEQLAAALDT 114 AT+ +L+ +DK YR RLG+ T T DA G+ + V + L A + Sbjct: 58 RATRLLTHLVGADKTYRATVRLGEGTTTEDAQGKFTQTTGVPDRDALLADPQPLRDACNA 117 Query: 115 FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-------- 166 G++ Q+PS SALK GK+ + R G E EARP+TV+ + + Sbjct: 118 LSGELMQVPSTVSALKVGGKRAHARVRDGEEFELEARPVTVHAFELLDVQPAQGASGTEV 177 Query: 167 -ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 +L++ + S GTY+R + DLG LG AH+ LRR AV + + ++ L VE Sbjct: 178 LDLDVRVRVSSGTYVRALARDLGGSLGTAAHLTALRRQAVGGFTLASATPVDEL---VEA 234 Query: 226 AEQQDIPAAELLDPLLMPM-DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP 276 E +PA+ ++PM + PV L + +NG V P Sbjct: 235 REGGALPASMP----VLPMGEVARRVLPVAQLDEELTGRVRNGQQVTLPEPP 282 >UniRef50_C3JA73 tRNA pseudouridine synthase B n=6 Tax=Bacteria RepID=C3JA73_9PORP Length = 261 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 11/240 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRI------YNANRAGHTGALDPLATGMLPICLGEATK 64 + ++ +DKP +S D + + + + + GHTG LDP ATG+L +C G ATK Sbjct: 23 MGSIIAVDKPLDWTSFDVVNRFRIMVKQTVGLKKIKVGHTGTLDPKATGLLLLCTGRATK 82 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIP 123 + L+ + K Y + G T + D + P + L AL F G Q+P Sbjct: 83 QIEQLMLNRKEYVATLKFGATTPSFDLEHPEDAHYPYEHITQGMLEEALQEFLGTTLQVP 142 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 ++SA+ GK+ Y+ AR+G + E +PIT++EL + E L + C KGTYIR++ Sbjct: 143 PIFSAVSVGGKRAYDLARKGKDCQLEGKPITIHELEVVSFEPPYATLRVSCGKGTYIRSL 202 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DLGE+L GA++ LRR + VE +TLE L + + AE + E DP++ P Sbjct: 203 ARDLGERLQSGAYLTALRRTQLGNVRVEDSLTLEELPDFLAHAELNE----EGFDPIVPP 258 >UniRef50_A8RBN0 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBN0_9FIRM Length = 276 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 82/263 (31%), Positives = 125/263 (47%), Gaps = 20/263 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVLL+ K M+S+D + +++ I + GH+G LDP ATG+L + +G A K +L Sbjct: 1 MDGVLLIRKEAEMTSHDVVARLRHILKTKKIGHSGTLDPNATGVLLVLIGRACKVLPFLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D+DK Y LG++T D +++ E+ +T L A L TF G +Q+P M S++K Sbjct: 61 DTDKEYIAELELGKQTLGDDIWSEVLAEKEITPII-DLQALLHTFLGKQKQLPPMLSSIK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYEYAR V R +T YEL + E + + CS GTYIR++ D+ + Sbjct: 120 VNGKKLYEYARNKEAVEVPMRDVTFYELEVLDEE--SMRFRVACSSGTYIRSLCRDVAQA 177 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 G + L R V ++ + VTLE + L + + Sbjct: 178 SGNLGCMKSLVRTKVGRFSLADCVTLEDVEA---------------GHFSLHSVAEVLAH 222 Query: 251 YPVVNLPLTSSVYFKNGNPVRTS 273 P + NG VR Sbjct: 223 LPQI--TYEPMKDIYNGKHVRLD 243 >UniRef50_Q4JV56 tRNA pseudouridine synthase B n=5 Tax=Corynebacterium RepID=TRUB_CORJK Length = 308 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 97/322 (30%), Positives = 152/322 (47%), Gaps = 30/322 (9%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 R R +GV+L+DKP G +S+D + K++RI R GH+G LDP+ATG+L + + Sbjct: 4 RSARSVLSRSGVVLVDKPSGPTSHDMVAKLRRIMGTRRIGHSGTLDPMATGLLVVGVERG 63 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV----TFSAEQLAAALDTFRGD 118 TKF +++ DKRY RLG T T DA G ++ + +Q+ A RGD Sbjct: 64 TKFLAHVVTHDKRYEATVRLGVATHTDDAQGDVLSTASPQDLQALTEQQVREAFAAQRGD 123 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH------EGNELELEI 172 I Q P+ S++K GK+ +E R+G +V RP+T++ L + + + + Sbjct: 124 IMQRPTSVSSIKIDGKRAHELVREGHDVVLPERPVTIFSLEVLDVVVDDATSCIDARISV 183 Query: 173 HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIP 232 HCS GTYIR I D+GE LG G H+ LRR +V + V TLE L E D Sbjct: 184 HCSSGTYIRAIARDVGEALGVGGHLTQLRRTSVGPFDVSEARTLEQLEEDPSLTLNLD-- 241 Query: 233 AAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFI 292 ++ + + + V G ++ G VR +G+ Sbjct: 242 ------------EAMVRCFDTREISESEGVDLSLGKWLKPVG---NKGVRAAVTPSGQ-- 284 Query: 293 GMGEIDDEGRVAPRRLVVEYPA 314 + ++++G+ + V PA Sbjct: 285 AIALVEEKGK-RASSVFVARPA 305 >UniRef50_B0MTY5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MTY5_9BACT Length = 240 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKFSQY 68 + ++DKP +S+D ++K+K + GH G LDPLATG+L +C+G+ATK + Sbjct: 19 IAVIDKPLEWTSSDVVRKIKFALRRAGYPKIKVGHAGTLDPLATGILLVCIGKATKMADA 78 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 L +K Y LG T + D + I P + E + L + G+ Q P +YS Sbjct: 79 LQAEEKEYVADLMLGATTPSFDLEHPIDRTYPFEHITREAVEEVLRSLTGERLQTPPLYS 138 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 A K +G + YE AR G EV I +YE+ + ++ + + + CSKGTYIR++ ++ Sbjct: 139 AKKVEGVRAYELARAGEEVELRKALINIYEMELMEYDLPRIRIRVRCSKGTYIRSLAGEI 198 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 G+ LG GAH+ L R + ++ L E +++AE + Sbjct: 199 GQALGSGAHLTSLCRTRSGGFRLDAAHELNFFLEKLQKAETK 240 >UniRef50_B1GZN9 tRNA pseudouridine synthase B n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=TRUB_UNCTG Length = 230 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 90/210 (42%), Positives = 134/210 (63%), Gaps = 1/210 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +I+G+LLLDKP G++S DA+ K+K++ N + GH G LDP +TG+L + +G+ATK Sbjct: 7 NIDGLLLLDKPFGITSFDAVYKIKKVLNVEKTGHCGTLDPASTGLLLVLMGKATKLQAKF 66 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSA 128 + DK Y LG TD+ D DG+++ E V + E++ ++ F G+I QIP MYSA Sbjct: 67 MKKDKVYLSSFLLGMVTDSGDLDGKVISENSVLNINIEKIKKMVEMFEGEIFQIPPMYSA 126 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LKY GKKL E ARQGIEV R+ R +T+ + + ++G+ +++ I CS GTYIRT+ DLG Sbjct: 127 LKYNGKKLCELARQGIEVERKPRKVTIKKFEVLSYDGDIVKVRIECSSGTYIRTLAQDLG 186 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEH 218 L CGA V LRR + + ++ + + Sbjct: 187 NVLKCGATVKTLRREKIDIFDIKDALRFKD 216 >UniRef50_UPI000050FC6C tRNA pseudouridine synthase B n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FC6C Length = 305 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 85/303 (28%), Positives = 141/303 (46%), Gaps = 26/303 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV++ DKPQG++S+ + +++R Y + GH G LDP+ATG+L + LG TK Y+ Sbjct: 8 GVIVCDKPQGLTSHGVVSRIRRWYGTRKVGHAGTLDPMATGVLVLGLGRGTKLLGYITGV 67 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV----TFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y RLG T T DAD + + + +A + RG I+Q+PS SA Sbjct: 68 SKTYLATIRLGSATPTDDADSEPDLFAEPAALSAVTDDGIAHGVSALRGSIDQVPSAVSA 127 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLF------IRHEGNELELEIHCSKGTYIRT 182 +K G++ Y R G +V +AR + + + + ++++E+ CS GTY+R Sbjct: 128 IKVNGQRSYARVRAGEDVVLKARRVEISDFTILATRYSVAQGHIDVDVEVDCSSGTYVRA 187 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + DLG LG H+ LRR V + ++ V ++ + PA L Sbjct: 188 LARDLGGSLGVYGHLTALRRTRVGAFSLDEAV-------MIPDDLDIEAPALTSL----- 235 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG-LVRVTEGENGKFIGMGEIDDEG 301 + + P V++ + G + T +P +G V V GE + + E+ G Sbjct: 236 -AEVARTLLPTVHVDSVEAKALMQGKTIGTDRSPDQGNDVAVIVGEE--LVSIAEVRAGG 292 Query: 302 RVA 304 + Sbjct: 293 VLK 295 >UniRef50_C7R3E1 tRNA pseudouridine synthase B n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3E1_JONDD Length = 333 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 86/319 (26%), Positives = 149/319 (46%), Gaps = 25/319 (7%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 R RR +G++++DKP GM+S+D + ++R+ + GH G LDP+ATG+L + +G Sbjct: 22 PRQPRRPTAADGIIVVDKPTGMTSHDVVAIMRRLAGTRKVGHAGTLDPMATGLLVVGVGR 81 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIE 120 T+ +L +DK Y RLG T + DADG + + +P + EQL AA G I+ Sbjct: 82 GTRLLHFLTAADKSYTATVRLGVATVSEDADGDVTDTQPCDHVTREQLQAAAARLTGVID 141 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR-HEGN--------ELELE 171 Q+PS SA+K G++ Y+ R G +V AR +TV + +G ++ L Sbjct: 142 QVPSAVSAVKIDGRRAYDRVRAGEDVVLPARSVTVSRFDIVDVVDGPPHHGVATKDVLLS 201 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDI 231 + S GTY+R + DL + +G H++ LRR V+++ + ++ L++ + Sbjct: 202 VDVSSGTYVRALGRDLAQIVGTVGHLVALRRTRVAEWTLAEARSVPQLQDTDPTVPLDVM 261 Query: 232 PAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKF 291 + L V + + +G + T L G E G+ Sbjct: 262 DLGSAAERALR----------VWRVSEAQAGRLAHGQRLTTE---LSGQYAAV-SEAGEL 307 Query: 292 IGMGEIDDEGRVAPRRLVV 310 + + + +G P + V Sbjct: 308 VAVVQC-GQGVARPVTVFV 325 >UniRef50_A0QIX1 tRNA pseudouridine synthase B n=93 Tax=Actinomycetales RepID=TRUB_MYCA1 Length = 309 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 83/240 (34%), Positives = 128/240 (53%), Gaps = 5/240 (2%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP GM+S+D + + +RI+ R GH G LDP+ATG+L + + ATK L + Sbjct: 5 GLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAA 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y RLGQ T T DA+G +V +++ + AA+ RGDI Q+PS SA+K Sbjct: 65 AKSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIR----HEGNELELEIHCSKGTYIRTIIDDL 187 GK+ Y+ R+G V ARP+ + E ++++E+ CS GTY+R + DL Sbjct: 125 AGKRAYKLVREGQAVELPARPVRIDRFEVRDLRAAGECVDVDVEVDCSSGTYVRALARDL 184 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G LG G H+ LRR V ++ +E+ L+ L E + D + + D Sbjct: 185 GAALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSYSLDEACLLIFGRRDLSADEA 244 >UniRef50_C8NZL8 tRNA pseudouridine synthase B (TRNA pseudouridine 55 synthase) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZL8_ERYRH Length = 277 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 92/298 (30%), Positives = 139/298 (46%), Gaps = 25/298 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L ++KPQ M+S D + KV+++ + GH+G LDP+ATG+L + + +ATK YL Sbjct: 1 MDGILCINKPQEMTSFDVVAKVRKLLKV-KVGHSGTLDPMATGVLVLAVNQATKALPYLG 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 +DK YR +LG +T T D G + E+ + +S E + + G Q SA Sbjct: 60 LNDKTYRGKCKLGMKTSTGDIWGAVEEQASIPQYSREDVLTCFEKLTGPQTQRVPKVSAK 119 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKK YEY EV + IT+Y L I EG+E+E S GTYIRT+ +D+G Sbjct: 120 KINGKKSYEYVFNDEEVKQLYTDITIYNLELIALEGDEIEFRAFVSNGTYIRTLCEDIGM 179 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG + L R V Y +E +TLE L + +D A Sbjct: 180 LLGTLGTMSALEREQVGPYTLENALTLEALTPETKLISVKDTIA---------------- 223 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P + + Y KNG + + L+ + G + + E + E R Sbjct: 224 -LPKI-VNPRMEDYVKNGKRLELDIEEDQVLI-----DTGTYYAVYEREHETTFKSVR 274 >UniRef50_C7M8Y8 tRNA pseudouridine synthase B n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M8Y8_CAPOD Length = 558 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 13/228 (5%) Query: 1 MSRPR--RRGRDINGVLLLDKPQGMSSNDALQKVKRI------YNANRAGHTGALDPLAT 52 M P R GR +LL+DKP SS A+ K+K + GH G LDPLA+ Sbjct: 1 MITPEELREGR----ILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIKIGHAGTLDPLAS 56 Query: 53 GMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAA 111 G+L IC G+ TK + D+ K Y +G T + D + +I P + E + Sbjct: 57 GLLVICTGKFTKKITEIQDAVKTYTGTITVGATTPSYDKETEINAHYPTDHITPELIEQV 116 Query: 112 LDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELE 171 F G++ Q P ++SA+K +GK+LYE+AR G E+ R I +Y + +L+ E Sbjct: 117 RMQFIGELTQTPPVFSAIKKEGKRLYEFARDGKEIEVPQRTIYIYSFNIDASQFPKLQFE 176 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 + CSKGTYIR++ +D G+ LG G ++ LRR + + V +T + Sbjct: 177 VVCSKGTYIRSLANDFGKALGSGGYLSALRRTKIGDFSVNDALTPDEF 224 >UniRef50_A4S143 Predicted protein n=3 Tax=Mamiellales RepID=A4S143_OSTLU Length = 279 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 126/231 (54%), Gaps = 7/231 (3%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIY---NANRAGHTGALDPLATGMLPICLGEATKFSQY 68 N +L+DKPQ +S D + +V+R+ + GH G LDP+ATG+L +C+G+ATK + Sbjct: 45 NMTILMDKPQKYTSFDVVARVRRLSRERGVKKVGHCGTLDPMATGLLILCVGKATKSVEE 104 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYS 127 DK Y +LG+ T + DAD ++ E P + +L G I+Q+P MYS Sbjct: 105 YSGMDKTYTGTIKLGEGTPSQDADEEVNEREPWEHVTDVELREGARKLTGAIKQLPPMYS 164 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIID 185 A+K GK+LY+ AR+G+EV R+ R + ++E R + + H SKGTY+RT+ Sbjct: 165 AIKVNGKRLYKSAREGVEVERKHRDVVIHEFEVERDAEDAQIVHFSAHVSKGTYVRTLAY 224 Query: 186 DLGEKLGCGAHVIYLRRLAVS-KYPVERMVTLEHLRELVEQAEQQDIPAAE 235 DL + LG H+ LRR + ++ VE T+E L E + + + Sbjct: 225 DLCKSLGTTGHLTALRRTKIGSEFDVEDAWTIEQLAEACGEDPSKFKKTPK 275 >UniRef50_C7MNL5 tRNA pseudouridine 55 synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNL5_CRYCD Length = 340 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 132/281 (46%), Gaps = 23/281 (8%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M + RR + V+ +DKP GM+S+D + +++RIY R GHTG LDP ATG L +C+G Sbjct: 1 MGK-RREASGYSLVIGVDKPAGMTSHDVVDRIRRIYGERRVGHTGTLDPAATGALAVCVG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFS---AEQLAAALDTFRG 117 AT+ ++L+ K Y G TDT DA G+++E+ PV S + A D+ G Sbjct: 60 PATRLDRFLVGHRKEYEFTVVFGAATDTDDAQGRVIEQLPVPVSVGNEAAVRAYFDSQLG 119 Query: 118 DIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----LELEIH 173 Q P YSA+K GKK Y AR+G + RPI +Y+L + E E + Sbjct: 120 TQHQRPPAYSAIKVNGKKSYAEARRGNVIELALRPIEIYKLDLVGFEQTEDMVSWCVRAE 179 Query: 174 CSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPA 233 S GTY+R+I D G G AHV LRRL VE +TL+ + P Sbjct: 180 VSAGTYVRSIARDAGLAFGTCAHVGSLRRLRSGSLAVEDCLTLDEIE---------RNPH 230 Query: 234 AELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG 274 LDPL + + +G P+ Sbjct: 231 TSALDPLTLLNRRILF------AGDGQANDVAHGRPLVIDN 265 >UniRef50_B2KCA4 tRNA pseudouridine synthase B n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KCA4_ELUMP Length = 235 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 113/218 (51%), Gaps = 2/218 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQY 68 I+G+LL+DKP SS+D + +R + GH G LDP+ATG+L + + ATK Sbjct: 8 PISGILLVDKPSDWSSHDIINVARRSMGIRKIGHAGTLDPMATGLLILLVSRTATKLQNK 67 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYS 127 L K Y IA LG TDT DA G I V F + G E I +YS Sbjct: 68 FLKLSKTYEGIAELGSETDTWDAYGGITNTCEVPEFDLPTIHKHAKKLTGSFEHIVPLYS 127 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 A K G+ ++ Y R+G V ITV+E I + ++ ++ S GTY+R++ L Sbjct: 128 AKKVNGRPMHRYMREGRIVEERKALITVHEWEEISYSKPNIKFTVNVSSGTYVRSLAYML 187 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 G +LGCG H+ LRR V + ++ +T+E LR L ++ Sbjct: 188 GRELGCGGHLTRLRRTRVGDFDIKNAITVEELRSLPQE 225 >UniRef50_Q2NBZ4 TRNA pseudouridine synthase B n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NBZ4_ERYLH Length = 362 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 99/332 (29%), Positives = 149/332 (44%), Gaps = 72/332 (21%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNA-----NRAGHTGALDPLATGMLPICLGEATKFS 66 +G ++LDKP+G+ S A+ VKR + GH G LDP A G+LPI LGEATK + Sbjct: 9 HGWIILDKPRGLGSTQAVGAVKRNLREGGYAKTKVGHGGTLDPEAEGVLPIALGEATKLA 68 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMY 126 +LD+ K Y + G+ TDT DA+G+I +AA L+ F G+IEQ+P Y Sbjct: 69 GRMLDASKIYEFTVQFGEETDTLDAEGEITARSDRRPPMAAIAAVLEHFTGEIEQVPPKY 128 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-----------EGNELELEIHCS 175 SAL GK+ Y+ AR G EV + R +T+Y++ RH + +E +L+ Sbjct: 129 SALMVDGKRAYDRARAGEEVELKTRRVTIYDISLSRHPREGGDPANLGDHDESQLDPRLR 188 Query: 176 K----------------------------------------------GTYIRTIIDDLGE 189 GTYIR++ D+ Sbjct: 189 GGDGVGFLADADLTSTFQTTSGRPDPYDPGAPLELADAITLTAHVSKGTYIRSLARDIAR 248 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG HV YLRR+ + + ++L+ L E+ + A QD LL+P+++ Sbjct: 249 ALGTVGHVTYLRRIKAGPFAEFQAISLDKLNEIGKGAPLQD---------LLLPLEAGLD 299 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV 281 D P + L S+ + G V + +GL Sbjct: 300 DIPALTLDSDSAQAVRQGR-VLSELPQTDGLY 330 >UniRef50_Q1AW51 tRNA pseudouridine synthase B n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AW51_RUBXD Length = 265 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 139/280 (49%), Gaps = 18/280 (6%) Query: 32 VKRIY-NANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSD 90 +KR+ + GHTG LDPLA+G+L + +G AT+ S+Y+ DK Y AR G +DT D Sbjct: 1 MKRLLPRRTKVGHTGTLDPLASGLLVLLVGRATRLSRYVTGLDKTYVATARFGAASDTLD 60 Query: 91 ADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREA 150 ADG+I+E +L AL F G+I Q+P M SA++ G++LYE R+G+EV RE Sbjct: 61 ADGEILENAGPVPDEAELRRALPRFVGEIRQLPPMASAVRVGGRRLYELHRRGVEVEREP 120 Query: 151 RPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV 210 R + V+ L + + + CS GTY+RT+I DL LG A++ LRR V V Sbjct: 121 RLVRVHSLELLSFDPPAATFAVSCSSGTYVRTLISDLAASLGTAAYLTALRRTRVGHLRV 180 Query: 211 ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPV 270 E + + L + ++P + P V + +G + Sbjct: 181 EDALPPQDL-------------DPSTIHHRIIPPSGVLAHLPAVEADEGRARAVASGRGL 227 Query: 271 RTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 R +G LEG RV G G+ + + + GR P ++ Sbjct: 228 RVAGG-LEGSFRVERG--GELLAVYRAEG-GRARPEVVLC 263 >UniRef50_D1PGN2 tRNA pseudouridine synthase B n=2 Tax=Prevotella RepID=D1PGN2_9BACT Length = 238 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 8/225 (3%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKFSQY 68 ++ +DKP MSS AL V+ + + + GH G LDPLATG+L +C G+ TK + Sbjct: 8 IIAIDKPYRMSSFGALAHVRYLLSKKLGFKVKIGHAGTLDPLATGVLVLCTGKCTKQIEQ 67 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 L K Y +LG T + D + + P + + + L F G+I+Q+P YS Sbjct: 68 LQTHTKEYTATLQLGATTASYDKEHSVNHTYPTEHITRQLVEETLKQFVGEIQQVPPTYS 127 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIID 185 A+K G + Y R G EV + + + V E+ + E + + C KGTYIR++ Sbjct: 128 AVKVNGDRSYALRRAGEEVQLKPKTVRVDEIELTDYNDEEKTASIRVVCGKGTYIRSLAR 187 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD 230 D+G L GA++ LRR + VE ++ +H +E +++ +D Sbjct: 188 DIGRALDSGAYLTALRRTKAGSFAVENCISFDHFQEWLDEQPLED 232 >UniRef50_A6LEL7 tRNA pseudouridine synthase B n=49 Tax=Bacteroidetes RepID=TRUB_PARD8 Length = 235 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 120/219 (54%), Gaps = 7/219 (3%) Query: 14 VLLLDKPQGMSSNDALQKVK----RIYNANR--AGHTGALDPLATGMLPICLGEATKFSQ 67 +L +KP +S D + K + R + GH G LDPLATG++ +C G ATK Sbjct: 8 ILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKRID 67 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMY 126 K Y +LG+ T + D + +I P + E + L TF G I+QIP ++ Sbjct: 68 EFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPPVF 127 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SA K +GK+ YE AR+G EV +++ + + EL + + +++ + CSKGTYIR + D Sbjct: 128 SACKVEGKRAYELARKGEEVELKSKTLVIDELELLECDLPVIKIRVVCSKGTYIRALARD 187 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 +G+ LG GAH+I L R + + ++ ++ E + + +EQ Sbjct: 188 IGKALGSGAHLIGLERTRIGEVTLDMCMSPEEIDDFLEQ 226 >UniRef50_D0WDY9 tRNA pseudouridine synthase B n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WDY9_9ACTN Length = 315 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 95/323 (29%), Positives = 156/323 (48%), Gaps = 33/323 (10%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R ++ V+ +DKPQGMSS+DA+ +++R++ R GH G LDPLATG+L +C+G A++ Sbjct: 2 KRGQSGLSLVIGIDKPQGMSSHDAVNRIRRMFGERRVGHMGTLDPLATGVLAVCVGPASR 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAA---LDTFRGDIEQ 121 YL + DK Y G +TDT DA G+++ + V A L + G Q Sbjct: 62 LDAYLTNHDKTYEARIAFGAQTDTDDAAGEVIRQAAVAPELSDATFAQEYLASIVGPRMQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-----LELEIHCSK 176 +P YSA+K G K YE AR+G V EARP+ V + + ++ ++ + SK Sbjct: 122 MPPAYSAIKKDGVKAYEAARRGKAVELEARPVEVRAADLLAIDTDDAGRVFWDVRLEVSK 181 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTYIR+I D G +LG AH+ LRR+ + +E V+LE Sbjct: 182 GTYIRSIARDAGLELGSAAHLSALRRVRAGRLGIEACVSLEE-------------AGRSG 228 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-------GLVRVTEGENG 289 + P+D +P + + + + + G P+ + + G+ + + Sbjct: 229 IAAACDPVD--LLGFPALEVDVRMAESIRCGRPLPLAALDPDAVHAHELGMRCIVFRDE- 285 Query: 290 KFIGMGEIDD-EGRVAPRRLVVE 311 + + E D G+ PR + + Sbjct: 286 -LVALYETDPFRGQAHPRCVFSQ 307 >UniRef50_B5ZBG4 tRNA pseudouridine synthase B n=15 Tax=Ureaplasma RepID=TRUB_UREU1 Length = 229 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 67/215 (31%), Positives = 114/215 (53%), Gaps = 3/215 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 +++++KP +SND +QKVKRI A + GH G LDP A+G+L + + E TK L Sbjct: 8 IIVINKPINWTSNDVVQKVKRIIKAKKVGHAGTLDPNASGILVLGINEGTKLLTKLTLDS 67 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RGDIEQIPSMYSALKYQ 132 K Y + G T+T D+ G+I+ + + ++ +A++ + + Q P +SALK Sbjct: 68 KTYVAEIQFGISTNTYDSTGEIISKINKFITLTEIESAIENLYKNEYWQKPPKFSALKIN 127 Query: 133 GKKLYEYARQGIEVPREARPITVYE--LLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKK YE AR I E R + ++E +L +E L++ I SKG Y+R+ DL + Sbjct: 128 GKKAYELARNNISFEIEPRLVKIFEYNILDFNYEKQILKIIIKVSKGFYVRSFAVDLAAR 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 + AH++ L R ++ + + +E + + Sbjct: 188 INNLAHLLSLVRTESGQFSINDAIEIEQVYDYWNN 222 >UniRef50_C2D7B6 Possible tRNA pseudouridine 55 synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7B6_9ACTN Length = 315 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 87/312 (27%), Positives = 132/312 (42%), Gaps = 23/312 (7%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R IN ++ L KP+G++S+D + ++ I + R GH G LDPLA G+L I +G+AT+ Sbjct: 2 KRGQSGINCLIALHKPKGITSHDCINVLRNILHERRIGHAGTLDPLADGVLLIGIGQATR 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAA---LDTFRGDIEQ 121 Y++ DK Y GQ+T T D +G I V E + A L F G I+Q Sbjct: 62 LLSYIVGHDKSYEASITFGQQTTTDDTEGDICASSLVPACVEDASYAQRVLRHFTGQIQQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE------GNELELEIHCS 175 +P YSA+ G + Y RQG + R + VY+ + S Sbjct: 122 VPPAYSAISLGGIRAYNAVRQGTPLDLSPRSVCVYKAELSDITFEPSTHAPIWHVHFCVS 181 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 KGTYIR++ D+G AH+ L R + + +TL+ L++ + Sbjct: 182 KGTYIRSLARDIGLYAQTHAHLSALERSSSGSITIADCITLDELKK---------ESLSS 232 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE---GLVRVTEGENGKFI 292 L + +L P D D L T V G + L V K Sbjct: 233 LTNRILNPFD--VIDAARYMLGDTDLVDMSYGRSLTIRKNCLNDCANSQLVGCVYQNKLY 290 Query: 293 GMGEIDDEGRVA 304 G+ E D+ + Sbjct: 291 GIYERKDDKLIC 302 >UniRef50_C6X4Q1 tRNA pseudouridine synthase B n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X4Q1_FLAB3 Length = 233 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 120/208 (57%), Gaps = 8/208 (3%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNAN-------RAGHTGALDPLATGMLPICLGEATKFS 66 ++LLDKP +S A+ K+K + GH G LDP ATG+L +C G+ TK Sbjct: 11 IILLDKPLDWTSFQAVNKLKYKLKREFNLPKKFKIGHAGTLDPRATGLLIVCTGKFTKII 70 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADG-QIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 + D+ K Y+ ++G +T++ D + +I+ + ++ Q+ L++F G+I+Q P + Sbjct: 71 PGIQDAPKEYQTEIKIGVQTESYDTEKPEILPQDFSHITSAQINEVLESFVGEIDQTPPV 130 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA+K G + Y+ AR+G +V ++R TV+ + + E + + CSKGTYIR++ Sbjct: 131 FSAIKIDGSRAYDLARKGKDVEMKSRKTTVHYISEVEVELPIIRFTVGCSKGTYIRSLAH 190 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERM 213 D+G+ LG GA++ LRR + +Y ++ Sbjct: 191 DIGQDLGVGAYLTNLRRTKIGEYSIDSA 218 >UniRef50_D0WR19 tRNA pseudouridine synthase B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WR19_9ACTO Length = 345 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 86/267 (32%), Positives = 134/267 (50%), Gaps = 19/267 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ ++DK G++S+D + V+R+ + GH G LDP+ATG+L I LG ATK +Y+ Sbjct: 14 DGLAVIDKDPGVTSHDVVGAVRRLAGTKKVGHAGTLDPMATGVLCIGLGRATKLLRYVTG 73 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y R G T T DA G++V R A +LA A+ G++ Q+PS SALK Sbjct: 74 TAKEYEATIRFGIETSTEDAQGELVRARGAREADAAELARAMANLTGEVLQVPSSVSALK 133 Query: 131 YQGKKLYEYARQGIEVPREARPITVYEL---------LFIRHEGNELELEIHCSKGTYIR 181 +G++ Y+ R+G EV +ARPI V +L++ + C GTY+R Sbjct: 134 VEGRRAYDLVREGREVVLDARPIRVDVFEAVGGPRFAEACGAPVFDLDVRVVCGAGTYVR 193 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 + DLGE LG GAH+ LRR V + V V++ + VE Q + Sbjct: 194 ALARDLGEALGFGAHLTSLRRTRVGPWDVGEAVSVRECADAVEADGQMPVHTL------- 246 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGN 268 D + +P + + ++ + G Sbjct: 247 --ADLCRAMFPALEVSEQAARDLRMGR 271 >UniRef50_D2NNU2 Pseudouridine synthase n=2 Tax=Rothia mucilaginosa RepID=D2NNU2_9MICC Length = 365 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 91/303 (30%), Positives = 136/303 (44%), Gaps = 38/303 (12%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +++ + +G++++DKP GMSS+DA+ +++RI R GH G LDP ATG+L + + +ATK Sbjct: 3 KKQPQGPSGLMVIDKPAGMSSHDAVSQMRRIAGTRRVGHAGTLDPAATGVLILGINKATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA----------EQLAAALDT 114 YL+ DK Y RLG T T DA+G+ P A ++ A+ Sbjct: 63 LLTYLVGQDKTYDATIRLGIETLTEDAEGEHTAAHPDAVEALTGMDAEQMRARILEAVAQ 122 Query: 115 FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR---------HEG 165 GDI Q+PS SA+K G + Y R G +V ARP+T+ E E Sbjct: 123 LSGDILQVPSAVSAIKINGVRSYARVRSGEQVELVARPVTISEFTVHSVTAGFAEYVIED 182 Query: 166 NE--------------LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE 211 E ++ + CS GTYIR + DLG+ LG G H+ LRR V +E Sbjct: 183 PENEGEHMATSVPVIDCDVTVSCSSGTYIRALARDLGKILGTGGHLTALRRTRVGAVVLE 242 Query: 212 RMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVR 271 L L++ E++E L + + L + G + Sbjct: 243 DAADLAQLKQRREESEAPLEDLPLLPLEE-----AARRIFGARELSAAEASDISYGRRIS 297 Query: 272 TSG 274 SG Sbjct: 298 PSG 300 >UniRef50_C7PUC9 tRNA pseudouridine synthase B n=7 Tax=Bacteroidetes RepID=C7PUC9_CHIPD Length = 232 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 68/209 (32%), Positives = 110/209 (52%), Gaps = 2/209 (0%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+L++KP +S D ++K++ A + GH G LDPLATG+L C G+ TK + Sbjct: 15 VVLINKPLKWTSFDIVRKIRNTTKA-KTGHAGTLDPLATGLLICCTGKMTKKINEYQAQE 73 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y +G T T D + + + +P+ + E + F G+++Q+P ++SA+K Sbjct: 74 KEYTGTFTIGATTPTYDLESEPTDFKPLDGITEELIHDTTKQFIGELQQLPPIHSAIKQN 133 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 GK +YE AR+G+EV E R I + E + + CS GTYIR++ +D G LG Sbjct: 134 GKPIYELARKGVEVKVEPRNIVIKEFEITNIALPVIHFRVVCSTGTYIRSLANDFGAALG 193 Query: 193 CGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 G ++ L R + + +E +E E Sbjct: 194 VGGYMSSLCRTRIGAFKLEDAWEIEKFVE 222 >UniRef50_D0RQI7 tRNA pseudouridine synthase B n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQI7_9RICK Length = 297 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 73/302 (24%), Positives = 133/302 (44%), Gaps = 13/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + L KP G +S+ L +K+ + + GH G LDP+A G+LPI + EATK + Sbjct: 2 VHGWINLYKPTGFTSSYCLNVLKKKFKLKKIGHIGTLDPMAEGVLPIAINEATKTIPLIN 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 S K Y G++T+T D++G+I+ +T S E + A+ F G I Q P +SA K Sbjct: 62 KSKKTYFFEVNWGKQTNTLDSEGEIMNISKITPSYEDIKKAIKKFIGTINQSPPEFSAKK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVY--ELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 GK+ Y+ AR+G++ + +Y ++L + + C GTY+R++ D+ Sbjct: 122 IDGKRAYQLAREGVKFELKKVKKKIYGLKILNHDFNNKKSLFVVSCESGTYVRSLAKDIA 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +L + + RL + + L+ L + ++ + S Sbjct: 182 TELKTFCYCSKIVRLRDGIFRKKNSYALKTL---------INNENINDFFKYMLDIKSVL 232 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVR-VTEGENGKFIGMGEIDDEGRVAPRR 307 P + + KNG V + + + + +G + G P+R Sbjct: 233 YHIPTIEINDKKLKLIKNGMKVSMLEEVGSKEYKEILADYHQNVVALGSM-KNGVFYPKR 291 Query: 308 LV 309 ++ Sbjct: 292 IL 293 >UniRef50_B6GCN3 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GCN3_9ACTN Length = 316 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 85/282 (30%), Positives = 124/282 (43%), Gaps = 21/282 (7%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R+ ++N +L +DKP G++S+D + +V+R N R GH G LDPLA+G++ + +G+AT+ Sbjct: 3 KRKPSELNLLLAVDKPVGITSHDVVSRVRRALNERRVGHAGTLDPLASGVMIVGVGQATR 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQ 121 + KRY G T T DA+G+ V+ S L F G+ EQ Sbjct: 63 LLGRITLERKRYLARIMFGCETTTDDAEGEPTRIADVSDDVLSPLFAKGVLREFVGEQEQ 122 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----LELEIHCSKG 177 +P YSA+ G + Y+ AR G +V AR I VY + + + SKG Sbjct: 123 VPPAYSAISVDGVRSYKRARAGEDVELPARTIEVYAADLVAVDEVDGRAVWTASFDVSKG 182 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIR++ D+G G AHV LRR A +E L + A L Sbjct: 183 TYIRSLARDIGRAAGSAAHVADLRRTASGPVTSGMCARIEDLS--------PEHAHAAAL 234 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG 279 DP + PV L NG + G Sbjct: 235 DP------ARVLGIPVRELTDDELAAVLNGRAIPCGSPRAAG 270 >UniRef50_Q14NU4 Putative trna pseudouridine synthase b protein n=1 Tax=Spiroplasma citri RepID=Q14NU4_SPICI Length = 303 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 122/213 (57%), Gaps = 4/213 (1%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ L++KP G +SN +Q++K+ N+ GH G LDPLATG+L + + ATK S+YLL Sbjct: 3 DGIFLINKPTGKTSNQVIQEIKQKLEINKIGHAGTLDPLATGLLVVLINNATKMSEYLLT 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGD-IEQIPSMYSAL 129 +DK Y V RL TDT D G ++ + P + L + F G EQ P YSA+ Sbjct: 63 ADKAYDVEMRLFIETDTGDITGNVLNKTAPFKIQKKVLKKIFNEFNGFMYEQYPPKYSAI 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDL 187 K GKKLYEYARQ EV + R +T+ + +++ + ++ + C+KGTYIR+++ D+ Sbjct: 123 KVNGKKLYEYARQDKEVKIKPRTVTIKAIKLKKYDAHNHTIKFSVLCTKGTYIRSLVTDI 182 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR 220 KL A V L R + + + ++ E + Sbjct: 183 AAKLNTIATVTALCRTQSGNFLLSKAISPETVN 215 >UniRef50_C6W615 tRNA pseudouridine synthase B n=5 Tax=Sphingobacteriales RepID=C6W615_DYAFD Length = 244 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 68/204 (33%), Positives = 102/204 (50%), Gaps = 1/204 (0%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+L+DKP +S D K+KR + GH G LDPLATG+L +C G+ TK + Sbjct: 24 VILIDKPLTWTSFDVANKLKRACKFKKIGHAGTLDPLATGLLILCTGKKTKQIDNFQAQE 83 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y LG+ T + D + E P + E L A G IEQ+P ++SA+K Sbjct: 84 KEYTGTLVLGKTTPSIDLESDFDAEYPTDHITPEVLENARQQLTGHIEQVPPLFSAIKID 143 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLG 192 G + Y+ AR+G E + R + + ++ I CSKGTYIR+++ D G G Sbjct: 144 GVRAYKLARRGEEAEIKKRAVEIKLFEIDATHFPSIDFRIICSKGTYIRSMVRDFGVLAG 203 Query: 193 CGAHVIYLRRLAVSKYPVERMVTL 216 GA++ L R + + ++ L Sbjct: 204 SGAYMSKLCRTRIGDFELKDAWEL 227 >UniRef50_D1AY31 tRNA pseudouridine synthase B n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AY31_STRM9 Length = 285 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 39/295 (13%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 +L+L+KP+ ++S +QKV++ N + GH G LDP+A G++ + +ATKFS YL+ Sbjct: 5 ILILNKPKDITSFSYIQKVRKEMNIKKIGHAGTLDPMAEGLMIVMANDATKFSDYLMKHS 64 Query: 74 KRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y V LG T+T D +G++ + + + + + + +QIP M+SA+K Sbjct: 65 KTYYVEMELGYETNTLDLEGEVTNKINHEINICLDDVKDIVKKYICKFKQIPPMFSAIKK 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 G KLY+ AR+GIE+ E R + + + I N + S GTYIR ++ D+G L Sbjct: 125 NGVKLYDLARKGIELELEGREVEITNIYDIAFSDNIISFRADVSSGTYIRALVRDIGRDL 184 Query: 192 GCGAHVIYLRRLAVSKYPVERM---VTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 + L R ++ + + + +++E + Sbjct: 185 NTYGTMTKLIREKINNFSLNDVNKKISIEDI----------------------------- 215 Query: 249 SDYPVVNLPLTSSVYFKNGNP--VRTSGAPLEGLV-RVTEGENGKFIGMGEIDDE 300 DY + + NG + ++ N F+G+ EI+ + Sbjct: 216 FDYKKLEVDNNLYKQLYNGMTKIIELKNISDNDKYLKIYF--NNVFVGIVEINKK 268 >UniRef50_Q319E0 tRNA pseudouridine synthase B n=8 Tax=Prochlorococcus marinus RepID=TRUB_PROM9 Length = 307 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 80/311 (25%), Positives = 156/311 (50%), Gaps = 24/311 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G L+++K +G +S+D +++++++ N + GHTG LDP G LPI +G AT+F QYL Sbjct: 5 DGFLVINKDKGCTSHDCVKQIRKLLNTRKVGHTGTLDPEVIGTLPIAIGSATRFIQYLPQ 64 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y +LG RT+T D G+I+ ++ S E+L L+ FRG I+QIP S++ Sbjct: 65 G-KTYIGQIKLGIRTNTDDIHGEIINQKCWPKISDEKLDQYLNKFRGLIKQIPPKVSSVH 123 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLG 188 G++ Y+ + R + + EL+ ++ + +EL+I+CS GTYIR I DLG Sbjct: 124 VNGERAYKKSFNNENFELAPREVKIDELILMKWDQINGIIELKINCSAGTYIRAIARDLG 183 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 E L ++ L+R++ + + + + +++ ++Q ++P S Sbjct: 184 EILNSEGCLLQLKRISACGFHEKNSIKISDIKKGIDQKNAS---------NFIIPTISAL 234 Query: 249 SDYPVVNLP-LTSSVYFKNGNPVRTS--------GAPLEGLVRVTEGENGKFIGMGEIDD 299 + + L +++ G ++ + ++V + +G+G ++ Sbjct: 235 NHISTLILNKEEDINFWQTGRAIKFDINYFNEGNNFDNKKPIKVVDKRK-MLLGIGFLNK 293 Query: 300 E-GRVAPRRLV 309 E + P+ ++ Sbjct: 294 ELTNINPKLVL 304 >UniRef50_A4AHD1 TRNA pseudouridine synthase B n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AHD1_9ACTN Length = 311 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 103/321 (32%), Positives = 151/321 (47%), Gaps = 31/321 (9%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M++P R +G+L +DKPQG++S+ + + + + GH G LDP+ATG+L + Sbjct: 1 MAKPPRNPA--SGILFVDKPQGITSHGVIARARASVGTRKIGHAGTLDPMATGLLVLGAN 58 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI----VEERPVTFSAEQLAAALDTFR 116 AT+ Y + DK+Y RLG ++T DA+G++ S E +AAA+ Sbjct: 59 NATRLLTYFVGLDKQYLATIRLGASSNTDDAEGELSPAADAAAIAAISDEAIAAAVAGLT 118 Query: 117 GDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYE---LLFIRHEGNELELEIH 173 G I Q PS SA+K GK+ Y AR G EV R +T+ L R E ++ + + Sbjct: 119 GPIMQRPSSVSAIKVDGKRAYTLARSGEEVVLAERAVTISVFDILEIERAEFIDVRVRVD 178 Query: 174 CSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPA 233 CS GTYIR + DLG LG G H+ LRR V + V R L+ Sbjct: 179 CSSGTYIRALARDLGGVLGVGGHLTALRRTRVGPFEVSRASVLDD--------------- 223 Query: 234 AELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIG 293 +L L+ P + V L S+ G V GA G + V G+ IG Sbjct: 224 -DLAGQLVSPAAVAGELFESVELDDQSAFELSRGRQVPL-GAVGTGPIAVVNS-VGRLIG 280 Query: 294 MGEIDDEGRVAPRRLVVEYPA 314 + E+ D GR R++ +PA Sbjct: 281 LAEVVD-GR---TRILSNFPA 297 >UniRef50_Q2GEU5 TRNA pseudouridine synthase B n=2 Tax=Neorickettsia RepID=Q2GEU5_NEOSM Length = 235 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 72/212 (33%), Positives = 108/212 (50%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 I G L LDK G+SS AL+ +KR + +AG+ G LDP+ATG+L I LG TK Sbjct: 9 SIEGWLSLDKESGISSFGALKLLKRKFGVKKAGYVGTLDPIATGVLVIALGRTTKLIPQF 68 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DS K Y G TDT D++G ++ + S + L +F G+ Q+P +SA+ Sbjct: 69 DDSFKEYEFAIEWGAETDTLDSEGAVLRNGGLIPSTSAILGVLPSFLGEQLQVPPKFSAI 128 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G + Y AR GIE + R + ++ + + H + L++ CSKGTY+R + D+ Sbjct: 129 HVNGHRAYSLARAGIEFNMQPRRVVIHSIECMNHSAGQSTLKVSCSKGTYVRALARDIAR 188 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRE 221 KL A V +RR + V L + + Sbjct: 189 KLESLAFVSKIRRTRSGIFNVTSGNKLSEITK 220 >UniRef50_B3DQF2 tRNA pseudouridine synthase B n=6 Tax=Bifidobacterium RepID=TRUB_BIFLD Length = 387 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 86/345 (24%), Positives = 145/345 (42%), Gaps = 83/345 (24%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L++DKPQG++S DA+ V+ + + GH G LDP+ATG L I G AT+ ++ Sbjct: 7 SGLLIIDKPQGVTSFDAVAAVRGALHIKKVGHAGTLDPMATGTLVIAFGHATRLLNAIVA 66 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDT----------------- 114 DK Y RLG RT T DA+G+++ + + L+A L Sbjct: 67 HDKTYEATIRLGLRTTTDDAEGEVLVDDEARSRWQTLSAQLTEGGQSGEPTALPTASWQD 126 Query: 115 ---------FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG 165 F GDIEQ+P+ +SA+K G++ Y+ AR+G +V + RP+T+ E + Sbjct: 127 LLTRTIATNFTGDIEQVPNTFSAIKINGQRAYDLAREGKDVELKPRPVTISEFTVLDIRS 186 Query: 166 N-----------------------ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRR 202 ++++ I CS GTYIR + DLG++LG G ++ LRR Sbjct: 187 GFVAGEQTAEPLREDANTGAIPALDVDVRISCSSGTYIRALARDLGKELGVGGYLTRLRR 246 Query: 203 LAVSKYPV-ERMVTLEHLRELVE---------------------------------QAEQ 228 V ++ + + L +++ + Sbjct: 247 TRVGRFALPDDASGLIAPEAMLDTRTHTVTAHTDQKTFTNREGQTVTRNKCVLDTPEGLA 306 Query: 229 QDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS 273 D LLD L + P +++ + + G + + Sbjct: 307 GDERRNWLLDHALTMEQAARGAMPALDITPEEASELRFGRRIERT 351 >UniRef50_C2KR47 Possible tRNA-pseudouridine synthase I n=2 Tax=Mobiluncus mulieris RepID=C2KR47_9ACTO Length = 371 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 104/333 (31%), Positives = 146/333 (43%), Gaps = 61/333 (18%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L++DKPQG++SN L +V+RI + G+ G LDP+ATG+L LG+ATK QYL S Sbjct: 24 GLLVVDKPQGLTSNQVLSRVRRIAGQKKVGYAGTLDPMATGLLIFALGKATKLLQYLGSS 83 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ-LAAALDTFRGDIEQIPSMYSALKY 131 DK Y R G TDT DA G +V LA +L +RG I Q+PS +SA+K Sbjct: 84 DKAYVARVRFGVSTDTDDAAGTVVGAAGAGGLTGSVLADSLGAYRGAIHQVPSSFSAIKV 143 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE------------------------ 167 G++ Y ARQG +V ++RP+T+ L Sbjct: 144 AGQRAYALARQGQDVKLKSRPVTISRLELESGLAPHEIDVSIGRAAQETTPRNPGGENPG 203 Query: 168 --------------------LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSK 207 +++ + CS GTYIR + DLG LG GAH+ LRR V Sbjct: 204 ATGGGAALAAADGGRVTVADVDIAVECSAGTYIRALARDLGRDLGTGAHLTALRRTRVGN 263 Query: 208 YPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD-YPVVNLPLTSSVYFKN 266 Y +E L L E E A Q I ++P+D+ +P + L T + Sbjct: 264 YGLEAARNLAELGE--EVATQGIIS--------IIPLDAAVKALFPTLELDETQARALGY 313 Query: 267 GNPVRTSGAPL-----EGLVRVTEGENGKFIGM 294 G V + E G+ I + Sbjct: 314 GQTVTLPSPSPALYNNNQPLAAALDEAGQVIAL 346 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A1JIX1 tRNA pseudouridine synthase B n=327 Tax=Gammapro... 382 e-105 UniRef50_C5AH02 TRNA pseudouridine synthase B n=3 Tax=Burkholder... 347 3e-94 UniRef50_Q21H63 tRNA pseudouridine synthase B n=5 Tax=Gammaprote... 345 1e-93 UniRef50_Q1LSL0 tRNA pseudouridine synthase B n=1 Tax=Baumannia ... 343 4e-93 UniRef50_Q1GXD4 tRNA pseudouridine synthase B n=4 Tax=Betaproteo... 342 7e-93 UniRef50_A1KUJ6 tRNA pseudouridine synthase B n=5 Tax=Neisseriac... 339 5e-92 UniRef50_Q1QSZ2 tRNA pseudouridine synthase B n=3 Tax=Proteobact... 337 2e-91 UniRef50_C7GDK4 tRNA pseudouridine 55 synthase n=6 Tax=Clostridi... 337 3e-91 UniRef50_C1D8X0 TruB n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 337 3e-91 UniRef50_B3PI98 tRNA pseudouridine synthase B n=5 Tax=Gammaprote... 337 3e-91 UniRef50_A8PNK9 tRNA pseudouridine synthase B n=1 Tax=Rickettsie... 336 5e-91 UniRef50_Q2SML1 tRNA pseudouridine synthase B n=3 Tax=Gammaprote... 335 1e-90 UniRef50_A1WXU9 tRNA pseudouridine synthase B n=4 Tax=Gammaprote... 335 1e-90 UniRef50_D0L0S4 tRNA pseudouridine synthase B n=1 Tax=Halothioba... 334 3e-90 UniRef50_C0GIW2 tRNA pseudouridine synthase B n=1 Tax=Dethiobact... 333 4e-90 UniRef50_C4ZJR7 tRNA pseudouridine synthase B n=4 Tax=Betaproteo... 332 1e-89 UniRef50_A4G7S5 tRNA pseudouridine synthase B (TRNA pseudouridin... 331 2e-89 UniRef50_Q3SWP7 tRNA pseudouridine synthase B n=100 Tax=Alphapro... 330 5e-89 UniRef50_B4RMB1 tRNA pseudouridine synthase B n=20 Tax=Betaprote... 329 5e-89 UniRef50_A8FDD4 tRNA pseudouridine synthase B n=29 Tax=Bacilli R... 329 6e-89 UniRef50_C4ZBF1 tRNA pseudouridine synthase B n=9 Tax=Firmicutes... 328 1e-88 UniRef50_C4Z5P0 tRNA pseudouridine synthase B n=2 Tax=Bacteria R... 327 2e-88 UniRef50_B1XV87 tRNA pseudouridine synthase B n=2 Tax=Polynucleo... 327 4e-88 UniRef50_C6D2E9 tRNA pseudouridine synthase B n=2 Tax=Paenibacil... 326 8e-88 UniRef50_A9KNW1 tRNA pseudouridine synthase B n=6 Tax=Clostridia... 326 8e-88 UniRef50_Q3ZXU5 tRNA pseudouridine synthase B n=5 Tax=Dehalococc... 326 8e-88 UniRef50_B8FR03 tRNA pseudouridine synthase B n=2 Tax=Desulfitob... 325 1e-87 UniRef50_D1PLN1 tRNA pseudouridine synthase B n=1 Tax=Subdoligra... 325 1e-87 UniRef50_Q812X9 tRNA pseudouridine synthase B n=128 Tax=Bacilli ... 325 1e-87 UniRef50_B8I6F0 tRNA pseudouridine synthase B n=5 Tax=Clostridiu... 325 2e-87 UniRef50_Q8RA40 tRNA pseudouridine synthase B n=10 Tax=Thermoana... 324 2e-87 UniRef50_Q5WFU5 tRNA pseudouridine synthase B n=2 Tax=Bacillacea... 324 3e-87 UniRef50_UPI000178873D tRNA pseudouridine synthase B n=1 Tax=Geo... 324 4e-87 UniRef50_A5UZQ6 tRNA pseudouridine synthase B n=5 Tax=Chloroflex... 322 8e-87 UniRef50_A8MFB1 tRNA pseudouridine synthase B n=1 Tax=Alkaliphil... 322 1e-86 UniRef50_A1HSB7 TRNA pseudouridine synthase B n=1 Tax=Thermosinu... 321 2e-86 UniRef50_Q6F7I5 tRNA pseudouridine synthase B n=20 Tax=Proteobac... 321 2e-86 UniRef50_A3WPV5 TRNA pseudouridine 5S synthase n=1 Tax=Idiomarin... 320 3e-86 UniRef50_Q2BH44 TRNA pseudouridine synthase B n=1 Tax=Neptuniiba... 320 4e-86 UniRef50_Q8K9H3 tRNA pseudouridine synthase B n=4 Tax=Buchnera a... 320 4e-86 UniRef50_Q31GK3 tRNA pseudouridine synthase B n=1 Tax=Thiomicros... 320 5e-86 UniRef50_C8P7Y2 tRNA pseudouridine synthase B n=1 Tax=Lactobacil... 320 5e-86 UniRef50_UPI0000E0F5A1 tRNA pseudouridine synthase B n=1 Tax=Gla... 319 6e-86 UniRef50_A8LL26 tRNA pseudouridine synthase B n=42 Tax=Rhodobact... 319 6e-86 UniRef50_B9ZLN1 tRNA pseudouridine synthase B n=1 Tax=Thioalkali... 319 1e-85 UniRef50_C3RL16 tRNA pseudouridine synthase B n=4 Tax=Bacteria R... 318 1e-85 UniRef50_Q0SSD7 tRNA pseudouridine synthase B n=33 Tax=Clostridi... 317 4e-85 UniRef50_C0ZF47 tRNA pseudouridine synthase B n=1 Tax=Brevibacil... 317 4e-85 UniRef50_A8RZ93 Putative uncharacterized protein n=8 Tax=Clostri... 316 5e-85 UniRef50_C7I1W4 tRNA pseudouridine synthase B n=1 Tax=Thiomonas ... 316 5e-85 UniRef50_Q0AYI5 tRNA pseudouridine synthase B n=1 Tax=Syntrophom... 316 6e-85 UniRef50_C2C2D8 tRNA pseudouridine synthase B n=3 Tax=Listeria R... 316 7e-85 UniRef50_D1CFW9 tRNA pseudouridine synthase B n=1 Tax=Thermobacu... 316 8e-85 UniRef50_Q2Y7W4 tRNA pseudouridine synthase B n=3 Tax=Nitrosomon... 315 1e-84 UniRef50_C6IW07 tRNA pseudouridine synthase B n=1 Tax=Paenibacil... 314 2e-84 UniRef50_UPI0000E87C37 tRNA pseudouridine synthase B n=1 Tax=Met... 314 3e-84 UniRef50_D2MK32 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 313 4e-84 UniRef50_Q4L5X4 tRNA pseudouridine synthase B n=68 Tax=Bacilli R... 313 5e-84 UniRef50_UPI00016C0EBC tRNA pseudouridine synthase B n=1 Tax=Epu... 313 5e-84 UniRef50_Q1MZS4 TRNA pseudouridine synthase B n=1 Tax=Bermanella... 313 5e-84 UniRef50_Q18BH7 tRNA pseudouridine synthase B n=8 Tax=Clostridia... 311 2e-83 UniRef50_C0WBC5 tRNA pseudouridine synthase B n=1 Tax=Acidaminoc... 311 2e-83 UniRef50_A9IMS8 tRNA pseudouridine synthase B n=3 Tax=Bartonella... 311 3e-83 UniRef50_B0PH12 Putative uncharacterized protein n=3 Tax=Clostri... 311 3e-83 UniRef50_A5CXX8 tRNA pseudouridine synthase B n=3 Tax=Bacteria R... 310 3e-83 UniRef50_Q3A4A3 tRNA pseudouridine synthase B n=2 Tax=Desulfurom... 310 5e-83 UniRef50_B9YSP0 tRNA pseudouridine synthase B n=3 Tax=Nostocacea... 309 6e-83 UniRef50_Q98BI6 tRNA pseudouridine synthase B n=2 Tax=Mesorhizob... 309 9e-83 UniRef50_C4GBF3 Putative uncharacterized protein n=1 Tax=Shuttle... 309 9e-83 UniRef50_B0NZN2 Putative uncharacterized protein n=1 Tax=Clostri... 308 2e-82 UniRef50_A7NAR1 tRNA pseudouridine synthase B n=19 Tax=Francisel... 308 2e-82 UniRef50_Q89AF6 tRNA pseudouridine synthase B n=1 Tax=Buchnera a... 307 2e-82 UniRef50_C6MD69 tRNA pseudouridine synthase B n=1 Tax=Nitrosomon... 307 3e-82 UniRef50_Q5X1C5 tRNA pseudouridine synthase B n=4 Tax=Legionella... 306 5e-82 UniRef50_B1YI60 tRNA pseudouridine synthase B n=2 Tax=Exiguobact... 306 8e-82 UniRef50_A5VJE2 tRNA pseudouridine synthase B n=18 Tax=Lactobaci... 305 1e-81 UniRef50_A1AMM4 tRNA pseudouridine synthase B n=2 Tax=Desulfurom... 305 2e-81 UniRef50_A7VT62 Putative uncharacterized protein n=2 Tax=Bacteri... 305 2e-81 UniRef50_Q2RJM2 tRNA pseudouridine synthase B n=1 Tax=Moorella t... 304 2e-81 UniRef50_C7H6A8 tRNA pseudouridine synthase B n=2 Tax=Faecalibac... 304 2e-81 UniRef50_A8ZZ61 tRNA pseudouridine synthase B n=1 Tax=Desulfococ... 304 3e-81 UniRef50_Q057K1 TRNA pseudouridine 55 synthetase n=1 Tax=Buchner... 303 4e-81 UniRef50_A5EWY7 TRNA pseudouridine synthase B n=1 Tax=Dichelobac... 303 7e-81 UniRef50_Q01SZ5 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 302 9e-81 UniRef50_C9KKC7 tRNA pseudouridine synthase B n=3 Tax=Veillonell... 302 1e-80 UniRef50_B5YJI4 tRNA pseudouridine synthase B n=1 Tax=Thermodesu... 302 1e-80 UniRef50_Q2RMR8 tRNA pseudouridine synthase B n=11 Tax=Alphaprot... 302 1e-80 UniRef50_Q1G9Q1 tRNA pseudouridine synthase B n=27 Tax=Lactobaci... 302 1e-80 UniRef50_C8NA97 tRNA pseudouridine synthase B n=1 Tax=Cardiobact... 302 1e-80 UniRef50_A8VS66 Pseudouridine synthase-like protein n=2 Tax=Baci... 302 1e-80 UniRef50_B3WER2 tRNA pseudouridine synthase B n=9 Tax=Lactobacil... 301 2e-80 UniRef50_Q3BRP7 tRNA pseudouridine synthase B n=20 Tax=Xanthomon... 301 2e-80 UniRef50_A3VQI2 TRNA pseudouridine synthase B n=2 Tax=Alphaprote... 300 4e-80 UniRef50_A0LE16 tRNA pseudouridine synthase B n=1 Tax=Magnetococ... 300 5e-80 UniRef50_A5D2S3 tRNA pseudouridine synthase B n=3 Tax=Peptococca... 299 7e-80 UniRef50_A2RE90 tRNA pseudouridine synthase B n=24 Tax=Streptoco... 299 7e-80 UniRef50_C6P7U8 tRNA pseudouridine synthase B n=1 Tax=Thermoanae... 299 8e-80 UniRef50_A5GF89 tRNA pseudouridine synthase B n=7 Tax=Geobacter ... 299 9e-80 UniRef50_B8FCY8 tRNA pseudouridine synthase B n=1 Tax=Desulfatib... 299 1e-79 UniRef50_B8CW75 tRNA pseudouridine 55 synthase n=1 Tax=Halotherm... 299 1e-79 UniRef50_D0LZ86 tRNA pseudouridine synthase B n=1 Tax=Haliangium... 298 1e-79 UniRef50_B2A3A0 tRNA pseudouridine synthase B n=1 Tax=Natranaero... 298 2e-79 UniRef50_B0THR7 tRNA pseudouridine synthase B n=2 Tax=Heliobacte... 298 2e-79 UniRef50_D2RKW1 tRNA pseudouridine synthase B n=1 Tax=Acidaminoc... 298 2e-79 UniRef50_A4J5W9 tRNA pseudouridine synthase B n=1 Tax=Desulfotom... 298 2e-79 UniRef50_C9R8X3 tRNA pseudouridine synthase B n=1 Tax=Ammonifex ... 297 2e-79 UniRef50_Q67P83 tRNA pseudouridine synthase B n=3 Tax=Bacteria R... 297 2e-79 UniRef50_D1VSB0 tRNA pseudouridine synthase B n=1 Tax=Peptoniphi... 297 2e-79 UniRef50_A4A2R8 TRNA pseudouridine synthase B (Fragment) n=1 Tax... 297 3e-79 UniRef50_C6LME9 tRNA pseudouridine synthase B n=1 Tax=Bryantella... 297 3e-79 UniRef50_UPI00016C5566 TruB n=1 Tax=Gemmata obscuriglobus UQM 22... 296 8e-79 UniRef50_O66922 tRNA pseudouridine synthase B n=2 Tax=Aquificace... 295 1e-78 UniRef50_A5IIS7 tRNA pseudouridine synthase B n=9 Tax=Thermotoga... 295 1e-78 UniRef50_A6GNL1 tRNA pseudouridine synthase B n=2 Tax=Burkholder... 295 2e-78 UniRef50_Q38W87 tRNA pseudouridine synthase B n=3 Tax=Lactobacil... 294 2e-78 UniRef50_Q2KXZ0 tRNA pseudouridine synthase B n=2 Tax=Proteobact... 294 3e-78 UniRef50_C0QUQ5 tRNA pseudouridine synthase B n=5 Tax=Aquificale... 294 4e-78 UniRef50_A6C3H8 tRNA pseudouridine synthase B n=1 Tax=Planctomyc... 294 4e-78 UniRef50_UPI0001C373A4 tRNA pseudouridine synthase B n=1 Tax=Rum... 293 5e-78 UniRef50_Q1IPJ6 tRNA pseudouridine synthase B n=1 Tax=Candidatus... 293 6e-78 UniRef50_Q5FQM1 tRNA pseudouridine synthase B n=9 Tax=Acetobacte... 293 7e-78 UniRef50_UPI000185BE2E tRNA pseudouridine synthase B n=1 Tax=Cor... 292 9e-78 UniRef50_C4V3N1 tRNA pseudouridine 55 synthase n=1 Tax=Selenomon... 292 1e-77 UniRef50_C7RGP3 tRNA pseudouridine synthase B n=4 Tax=Anaerococc... 292 1e-77 UniRef50_C5RBC4 Pseudouridylate synthase n=2 Tax=Lactobacillales... 292 1e-77 UniRef50_D2R7P9 tRNA pseudouridine synthase B n=1 Tax=Pirellula ... 290 3e-77 UniRef50_C2KV13 tRNA pseudouridine 55 synthase n=6 Tax=Bacteria ... 290 4e-77 UniRef50_Q1WUF2 tRNA pseudouridine synthase B n=28 Tax=Firmicute... 290 5e-77 UniRef50_A7H9F6 tRNA pseudouridine synthase B n=4 Tax=Anaeromyxo... 290 5e-77 UniRef50_C1F2Z6 tRNA pseudouridine synthase B n=1 Tax=Acidobacte... 290 5e-77 UniRef50_B7KGX7 tRNA pseudouridine synthase B n=19 Tax=Cyanobact... 289 6e-77 UniRef50_Q02Z55 tRNA pseudouridine synthase B n=21 Tax=Streptoco... 289 7e-77 UniRef50_B4WM04 tRNA pseudouridine synthase B, putative n=1 Tax=... 289 7e-77 UniRef50_Q2LWU1 tRNA pseudouridine synthase B n=1 Tax=Syntrophus... 289 8e-77 UniRef50_C6HXK4 tRNA pseudouridine synthase B n=1 Tax=Leptospiri... 289 1e-76 UniRef50_Q0C5Z2 tRNA pseudouridine synthase B n=1 Tax=Hyphomonas... 288 1e-76 UniRef50_B9KZ57 tRNA pseudouridine synthase B n=2 Tax=Thermomicr... 287 3e-76 UniRef50_C4FYS6 Putative uncharacterized protein n=1 Tax=Abiotro... 287 3e-76 UniRef50_C8WWJ2 tRNA pseudouridine synthase B n=2 Tax=Alicycloba... 286 5e-76 UniRef50_P59881 tRNA pseudouridine synthase B n=15 Tax=Cyanobact... 286 5e-76 UniRef50_Q4FVL3 tRNA pseudouridine synthase B n=10 Tax=Bacteria ... 286 5e-76 UniRef50_A9AV52 tRNA pseudouridine synthase B n=1 Tax=Herpetosip... 285 2e-75 UniRef50_B1CB51 Putative uncharacterized protein n=1 Tax=Anaerof... 284 2e-75 UniRef50_Q0EZ77 TRNA pseudouridine synthase B n=1 Tax=Mariprofun... 284 3e-75 UniRef50_B3CM19 tRNA pseudouridine synthase B n=5 Tax=Wolbachia ... 284 3e-75 UniRef50_Q5PAY2 tRNA pseudouridine synthase B n=10 Tax=Anaplasma... 283 5e-75 UniRef50_Q8R5X8 tRNA pseudouridine synthase B n=16 Tax=Fusobacte... 282 8e-75 UniRef50_B5YEH8 tRNA pseudouridine synthase B n=2 Tax=Dictyoglom... 282 1e-74 UniRef50_B8DW45 tRNA pseudouridine synthase B n=5 Tax=Bifidobact... 282 1e-74 UniRef50_B3CTX3 tRNA pseudouridine 55 synthase n=2 Tax=Orientia ... 282 1e-74 UniRef50_Q9Z5I4 tRNA pseudouridine synthase B n=3 Tax=Mycobacter... 282 1e-74 UniRef50_Q7MBB8 tRNA pseudouridine synthase B n=3 Tax=Cyanobacte... 282 1e-74 UniRef50_Q3ABA1 tRNA pseudouridine synthase B n=1 Tax=Carboxydot... 282 1e-74 UniRef50_C9LRE6 tRNA pseudouridine synthase B n=1 Tax=Dialister ... 282 2e-74 UniRef50_Q493T5 tRNA pseudouridine synthase B n=2 Tax=Candidatus... 281 2e-74 UniRef50_B9Y7W5 Putative uncharacterized protein n=1 Tax=Holdema... 281 2e-74 UniRef50_A1WLI1 tRNA pseudouridine synthase B n=103 Tax=cellular... 281 3e-74 UniRef50_D1AS76 tRNA pseudouridine synthase B n=1 Tax=Anaplasma ... 280 3e-74 UniRef50_Q8D2X8 tRNA pseudouridine synthase B n=1 Tax=Wiggleswor... 280 4e-74 UniRef50_A8SMZ3 Putative uncharacterized protein n=1 Tax=Parvimo... 280 4e-74 UniRef50_A0LHM2 tRNA pseudouridine synthase B n=1 Tax=Syntrophob... 280 5e-74 UniRef50_A6LLV6 tRNA pseudouridine synthase B n=1 Tax=Thermosiph... 279 6e-74 UniRef50_Q30WI7 tRNA pseudouridine synthase B n=4 Tax=Desulfovib... 279 8e-74 UniRef50_Q04ED7 tRNA pseudouridine synthase B n=1 Tax=Oenococcus... 279 9e-74 UniRef50_D2Q8K5 TruB tRNA pseudouridine synthase B n=6 Tax=Bifid... 278 1e-73 UniRef50_D1BM63 tRNA pseudouridine synthase B n=3 Tax=Veillonell... 278 1e-73 UniRef50_Q2G5F3 tRNA pseudouridine synthase B n=8 Tax=Sphingomon... 277 4e-73 UniRef50_A9BI94 tRNA pseudouridine synthase B n=1 Tax=Petrotoga ... 277 4e-73 UniRef50_B1ZX46 tRNA pseudouridine synthase B n=3 Tax=Verrucomic... 276 6e-73 UniRef50_C0QHM4 TruB n=1 Tax=Desulfobacterium autotrophicum HRM2... 276 7e-73 UniRef50_B6BVJ8 tRNA pseudouridine synthase B n=1 Tax=beta prote... 276 7e-73 UniRef50_Q4JV56 tRNA pseudouridine synthase B n=5 Tax=Corynebact... 275 1e-72 UniRef50_B1MZH0 tRNA pseudouridine synthase B n=3 Tax=Leuconosto... 275 1e-72 UniRef50_C0W0C7 Possible tRNA-pseudouridine synthase I n=1 Tax=A... 275 1e-72 UniRef50_B0S1E2 tRNA pseudouridine 5S synthase n=2 Tax=Finegoldi... 275 1e-72 UniRef50_Q46JB9 tRNA pseudouridine synthase B n=2 Tax=Prochloroc... 274 2e-72 UniRef50_A7BD72 Putative uncharacterized protein n=1 Tax=Actinom... 274 2e-72 UniRef50_Q8CWM3 tRNA pseudouridine synthase B n=6 Tax=Cyanobacte... 274 3e-72 UniRef50_C7R3E1 tRNA pseudouridine synthase B n=1 Tax=Jonesia de... 274 3e-72 UniRef50_D2R9Q7 tRNA pseudouridine synthase B n=1 Tax=Gardnerell... 273 5e-72 UniRef50_C0GUB0 tRNA pseudouridine synthase B n=1 Tax=Desulfonat... 273 6e-72 UniRef50_D1N2Y9 tRNA pseudouridine synthase B n=2 Tax=Lentisphae... 273 6e-72 UniRef50_P59880 tRNA pseudouridine synthase B n=2 Tax=Prochloroc... 273 6e-72 UniRef50_Q2J732 tRNA pseudouridine synthase B n=1 Tax=Frankia sp... 271 2e-71 UniRef50_B3DZL5 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 271 2e-71 UniRef50_C7NH20 tRNA pseudouridine 55 synthase n=1 Tax=Kytococcu... 270 4e-71 UniRef50_C7LXY6 tRNA pseudouridine synthase B n=1 Tax=Acidimicro... 269 7e-71 UniRef50_C1ZEI4 tRNA pseudouridine 55 synthase n=1 Tax=Planctomy... 269 8e-71 UniRef50_C2BRN4 Possible tRNA-pseudouridine synthase I n=1 Tax=M... 269 1e-70 UniRef50_C7MBA9 tRNA pseudouridine synthase B n=1 Tax=Brachybact... 268 1e-70 UniRef50_Q72ER4 tRNA pseudouridine synthase B n=10 Tax=Desulfovi... 268 2e-70 UniRef50_D1IN94 Whole genome shotgun sequence of line PN40024, s... 268 2e-70 UniRef50_D0MI93 tRNA pseudouridine synthase B n=1 Tax=Rhodotherm... 268 2e-70 UniRef50_C4LJ77 tRNA pseudouridine synthase B n=1 Tax=Corynebact... 268 2e-70 UniRef50_B6AR13 tRNA pseudouridine synthase B n=2 Tax=Leptospiri... 267 3e-70 UniRef50_Q6MMS4 tRNA pseudouridine synthase B n=1 Tax=Bdellovibr... 267 3e-70 UniRef50_Q6MD66 tRNA pseudouridine synthase B n=15 Tax=Chlamydia... 267 3e-70 UniRef50_B7ICP6 tRNA pseudouridine synthase B n=1 Tax=Thermosiph... 266 6e-70 UniRef50_A8RBN0 Putative uncharacterized protein n=2 Tax=unclass... 266 6e-70 UniRef50_Q1AW51 tRNA pseudouridine synthase B n=1 Tax=Rubrobacte... 266 9e-70 UniRef50_C1SPK2 tRNA pseudouridine 55 synthase n=1 Tax=Denitrovi... 265 1e-69 UniRef50_B9XFC5 tRNA pseudouridine synthase B n=1 Tax=bacterium ... 265 1e-69 UniRef50_Q0WVR7 tRNA synthase-like protein n=10 Tax=Magnoliophyt... 265 2e-69 UniRef50_D0WDY9 tRNA pseudouridine synthase B n=1 Tax=Slackia ex... 264 2e-69 UniRef50_A1R520 tRNA pseudouridine synthase B n=14 Tax=Actinomyc... 264 3e-69 UniRef50_C2CXC9 Possible tRNA-pseudouridine synthase I n=1 Tax=G... 264 4e-69 UniRef50_Q2NIZ2 tRNA pseudouridine synthase B n=7 Tax=Acholeplas... 263 5e-69 UniRef50_UPI000050FC6C tRNA pseudouridine synthase B n=1 Tax=Bre... 263 6e-69 UniRef50_D1AL32 tRNA pseudouridine synthase B n=1 Tax=Sebaldella... 263 6e-69 UniRef50_B0BXR2 tRNA pseudouridine synthase B n=16 Tax=Rickettsi... 262 1e-68 UniRef50_Q6AJY7 tRNA pseudouridine synthase B n=1 Tax=Desulfotal... 262 1e-68 UniRef50_B2UQ50 tRNA pseudouridine synthase B n=3 Tax=Verrucomic... 261 2e-68 UniRef50_C5NXZ4 tRNA pseudouridine synthase B n=1 Tax=Gemella ha... 261 2e-68 UniRef50_B9FM24 Putative uncharacterized protein n=1 Tax=Oryza s... 260 4e-68 UniRef50_C7MNL5 tRNA pseudouridine 55 synthase n=1 Tax=Cryptobac... 260 5e-68 UniRef50_C1E906 Predicted protein n=5 Tax=Eukaryota RepID=C1E906... 260 6e-68 UniRef50_B6GCN3 Putative uncharacterized protein n=2 Tax=Collins... 259 7e-68 UniRef50_A4XL67 tRNA pseudouridine synthase B n=1 Tax=Caldicellu... 259 9e-68 UniRef50_C2D7B6 Possible tRNA pseudouridine 55 synthase n=1 Tax=... 259 1e-67 UniRef50_C3JA73 tRNA pseudouridine synthase B n=6 Tax=Bacteria R... 258 2e-67 UniRef50_Q1NKV8 TRNA pseudouridine synthase B n=3 Tax=Deltaprote... 257 4e-67 UniRef50_B3DQF2 tRNA pseudouridine synthase B n=6 Tax=Bifidobact... 257 4e-67 UniRef50_A0QIX1 tRNA pseudouridine synthase B n=93 Tax=Actinomyc... 257 5e-67 UniRef50_C8NZL8 tRNA pseudouridine synthase B (TRNA pseudouridin... 256 8e-67 UniRef50_C7N8V4 tRNA pseudouridine synthase B n=1 Tax=Leptotrich... 255 1e-66 UniRef50_C8W716 tRNA pseudouridine synthase B n=2 Tax=Atopobium ... 254 2e-66 UniRef50_B9MR51 tRNA pseudouridine synthase B n=1 Tax=Anaerocell... 254 2e-66 UniRef50_D0RQI7 tRNA pseudouridine synthase B n=1 Tax=alpha prot... 254 3e-66 UniRef50_Q2NBZ4 TRNA pseudouridine synthase B n=1 Tax=Erythrobac... 254 3e-66 UniRef50_B1GZN9 tRNA pseudouridine synthase B n=1 Tax=uncultured... 253 6e-66 UniRef50_C2KR47 Possible tRNA-pseudouridine synthase I n=2 Tax=M... 252 9e-66 UniRef50_C9MUE6 tRNA pseudouridine synthase B n=1 Tax=Leptotrich... 252 1e-65 UniRef50_C7M8Y8 tRNA pseudouridine synthase B n=1 Tax=Capnocytop... 252 1e-65 UniRef50_Q319E0 tRNA pseudouridine synthase B n=8 Tax=Prochloroc... 252 1e-65 UniRef50_C8WI31 tRNA pseudouridine synthase B n=2 Tax=Coriobacte... 252 1e-65 UniRef50_D0NZ97 tRNA pseudouridine synthase B, putative n=1 Tax=... 250 5e-65 UniRef50_D2NNU2 Pseudouridine synthase n=2 Tax=Rothia mucilagino... 250 5e-65 UniRef50_B0MTY5 Putative uncharacterized protein n=1 Tax=Alistip... 250 5e-65 UniRef50_C8PR21 tRNA pseudouridine synthase B n=1 Tax=Treponema ... 250 6e-65 UniRef50_D0WR19 tRNA pseudouridine synthase B n=1 Tax=Actinomyce... 250 6e-65 UniRef50_C9RKT6 tRNA pseudouridine synthase B n=1 Tax=Fibrobacte... 249 7e-65 UniRef50_Q14NU4 Putative trna pseudouridine synthase b protein n... 248 2e-64 UniRef50_A4S143 Predicted protein n=3 Tax=Mamiellales RepID=A4S1... 247 3e-64 UniRef50_A6GK85 TruB (Fragment) n=1 Tax=Plesiocystis pacifica SI... 247 3e-64 UniRef50_C1XV12 tRNA pseudouridine synthase B n=1 Tax=Meiothermu... 247 3e-64 UniRef50_D1PGN2 tRNA pseudouridine synthase B n=2 Tax=Prevotella... 247 5e-64 UniRef50_A6LEL7 tRNA pseudouridine synthase B n=49 Tax=Bacteroid... 247 5e-64 UniRef50_C1A8P0 tRNA pseudouridine synthase B n=1 Tax=Gemmatimon... 246 6e-64 UniRef50_C0QZ24 Pseudouridylate synthase n=2 Tax=Brachyspira Rep... 246 7e-64 UniRef50_D1BAB8 tRNA pseudouridine synthase B n=1 Tax=Thermanaer... 245 1e-63 Sequences not found previously or not previously below threshold: >UniRef50_A1JIX1 tRNA pseudouridine synthase B n=327 Tax=Gammaproteobacteria RepID=TRUB_YERE8 Length = 329 Score = 382 bits (982), Expect = e-105, Method: Composition-based stats. Identities = 223/312 (71%), Positives = 257/312 (82%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M RPRRRGRDINGVLLLDKP G+SSND LQKVKR+++ANRAGHTGALDPLATGMLPICLG Sbjct: 1 MGRPRRRGRDINGVLLLDKPLGLSSNDVLQKVKRLFSANRAGHTGALDPLATGMLPICLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKFSQ+LLDSDKRYRV+ARLGQRTDTSDA+G ++ ER V + Q+ AALD+FRG + Sbjct: 61 EATKFSQFLLDSDKRYRVVARLGQRTDTSDAEGALISEREVNVTQAQMDAALDSFRGSSQ 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+PSMYSALK+QGK LYEYARQGIEV REAR ITVYELLFIR EGN+LELEIHCSKGTYI Sbjct: 121 QVPSMYSALKHQGKPLYEYARQGIEVEREARSITVYELLFIRWEGNDLELEIHCSKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RTIIDDLGE LGCGAHV YLRRL V+ YP +RMVTLE L +VE A+ ++ LD L Sbjct: 181 RTIIDDLGELLGCGAHVSYLRRLQVATYPSDRMVTLEQLTAIVETAQAEERSPNAELDAL 240 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 L+PMDS ++P VNL + Y K G PV +G P EG+VR+TEGE FIG+G I ++ Sbjct: 241 LLPMDSAVLNFPEVNLLPAVAAYVKQGQPVHVAGTPGEGMVRITEGEERNFIGIGTIAED 300 Query: 301 GRVAPRRLVVEY 312 GRVAP+RLVVE+ Sbjct: 301 GRVAPKRLVVEH 312 >UniRef50_C5AH02 TRNA pseudouridine synthase B n=3 Tax=Burkholderiales RepID=C5AH02_BURGB Length = 318 Score = 347 bits (890), Expect = 3e-94, Method: Composition-based stats. Identities = 144/315 (45%), Positives = 190/315 (60%), Gaps = 19/315 (6%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 RPR R ++GVLLLDKP G+SSNDAL + KR+Y A +AGHTG LDPLA+G+LP+C GEA Sbjct: 10 RPRVPRRLLDGVLLLDKPVGLSSNDALIRAKRLYLAKKAGHTGTLDPLASGLLPLCFGEA 69 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 TKFSQ LL++DK Y RLG RT T DA+G+ +E R V + A L F G+I Q+ Sbjct: 70 TKFSQDLLEADKTYEATMRLGIRTTTGDAEGEAIETREVRVGCAAVEAVLPRFLGEIVQV 129 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALK GK LYEYAR G V RE R +T++ L + E + + CSKGTY+RT Sbjct: 130 PPMYSALKRDGKPLYEYARAGQTVEREGRNVTIHALELLACELPNVTFRVTCSKGTYVRT 189 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +D+GE LGCGAH++ LRR V +E VTL+ L + D L Sbjct: 190 LAEDIGEALGCGAHLVALRRTGVGALTLEHAVTLDALSDAQAAER----------DGWLQ 239 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG-------LVRVTEGENGKFIGMG 295 P+D+ S +P V L + F++G +R + AP G VRV + G+ +G+ Sbjct: 240 PVDALLSTFPPVRLDAEEAKRFRHGQRLRLASAPETGAHDEAGARVRVYDA-AGQLLGVA 298 Query: 296 EIDDEGRVAPRRLVV 310 + D G +AP RLVV Sbjct: 299 RLLD-GVLAPERLVV 312 >UniRef50_Q21H63 tRNA pseudouridine synthase B n=5 Tax=Gammaproteobacteria RepID=TRUB_SACD2 Length = 313 Score = 345 bits (885), Expect = 1e-93, Method: Composition-based stats. Identities = 144/319 (45%), Positives = 199/319 (62%), Gaps = 15/319 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +R GR I+GV+++DKP G SSN LQ+VKR++ AN+AGHTG+LDPLATG+LP+C G Sbjct: 1 MGNRKRPGRPISGVIVIDKPAGDSSNGVLQRVKRLFFANKAGHTGSLDPLATGVLPVCFG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 +ATKFSQ+LLDSDK Y R G+ TDT+D+DG+++E + + A+ + GDI Sbjct: 61 DATKFSQFLLDSDKEYVSTFRFGEVTDTADSDGEVLESIDASKLTKADVLKAIKAYIGDI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---ELELEIHCSK 176 +Q+P MYSALK G+ LY+ ARQGIEV RE RP+TVYE + E ++ + CSK Sbjct: 121 DQVPPMYSALKRNGQPLYKLARQGIEVEREPRPVTVYEFELLAFRPGAVAEADVRVFCSK 180 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTYIR++ D+G L G HV LRR + +++ +T+E L + ++ AE+ Sbjct: 181 GTYIRSLASDIGADLELGGHVAKLRRTQAGPFTIDQSITIEELEQ------ERGERLAEV 234 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGA----PLEGLVRVTEGENGKFI 292 LD L+P D +D+P + L S+ YF G V S VRV + GKF Sbjct: 235 LDHHLLPTDIAVADFPSLELDDNSAFYFSRGQAVMDSRVYRLGDEGDKVRVFDSS-GKFY 293 Query: 293 GMGEIDDEGRVAPRRLVVE 311 G+ EI DEG VAP+RLV + Sbjct: 294 GVAEITDEGTVAPKRLVSQ 312 >UniRef50_Q1LSL0 tRNA pseudouridine synthase B n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=TRUB_BAUCH Length = 317 Score = 343 bits (881), Expect = 4e-93, Method: Composition-based stats. Identities = 156/304 (51%), Positives = 209/304 (68%), Gaps = 2/304 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +ING++LLDK +G+SSN L KVKR++ +AGHTGALDPLA+GMLPICLGEATKFS+YL Sbjct: 11 NINGIILLDKQEGLSSNYLLHKVKRLFRVQKAGHTGALDPLASGMLPICLGEATKFSKYL 70 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 LD+DKRY V A+LG++T+T DA G I+ RPVT + + ++ F GDI QIP M+S++ Sbjct: 71 LDADKRYIVSAKLGEKTNTYDATGIIINTRPVTINQAMIEHIMEQFYGDIYQIPPMFSSI 130 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 KYQG+ LY+YAR+GI +PR AR + +Y L + + +EL+IHCSKGTYIRTIIDD+GE Sbjct: 131 KYQGRALYKYARKGINIPRSARLVHIYNLQILDWDNTHIELQIHCSKGTYIRTIIDDIGE 190 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LGCGAHV LRRLAV+ Y RM+TLE L+ + A +Q L+ LL+P+DS + Sbjct: 191 LLGCGAHVTMLRRLAVAHYHTARMITLESLQTAITLALRQTPNTLVQLNKLLLPIDSAVA 250 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGK--FIGMGEIDDEGRVAPRR 307 ++P + L S + G V GLVR+ E + F G+GEI G + P+R Sbjct: 251 NFPAIKLSKDSVARVRKGQMVAVDQCWQSGLVRMCENKGETTYFFGIGEITQPGVLKPKR 310 Query: 308 LVVE 311 L+ E Sbjct: 311 LLAE 314 >UniRef50_Q1GXD4 tRNA pseudouridine synthase B n=4 Tax=Betaproteobacteria RepID=TRUB_METFK Length = 302 Score = 342 bits (879), Expect = 7e-93, Method: Composition-based stats. Identities = 147/305 (48%), Positives = 206/305 (67%), Gaps = 11/305 (3%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R R+I+GVLLLDKP G+SSN ALQ VKR+Y A +AGHTG+LDPLA+G+LPICLGEATK Sbjct: 4 KRVKRNIDGVLLLDKPLGISSNQALQMVKRLYQAAKAGHTGSLDPLASGLLPICLGEATK 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 FS +LLD+DK YR + LG T T D +G+I+ + PVT + +L A L GDI Q+P Sbjct: 64 FSHFLLDADKSYRALVTLGSTTTTGDVEGEIMTQAPVTVTQSELEAILQDMVGDILQVPP 123 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK++GK LY YAR+G+E+PR+ RP+T++ + R +G + E+ + CSKGTYIRT+ Sbjct: 124 MYSALKHEGKALYAYAREGVEIPRKPRPVTIHAIALERFDGKQFEMVVSCSKGTYIRTLA 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G +LGCGAH+ LRRL + + ++ VT+E L ++ + D +L+ + Sbjct: 184 EDIGSRLGCGAHLGGLRRLTTAHFNLKNAVTIEQLDQMSQAER----------DAVLLQV 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 D+ D+P+V L S+ Y G V SG + GL R+ E G F+G+GE G +A Sbjct: 234 DAAIEDFPIVTLDADSAFYLLQGQEVWKSGLSISGLFRLY-SEQGAFLGLGEQTSRGSIA 292 Query: 305 PRRLV 309 PRRL+ Sbjct: 293 PRRLL 297 >UniRef50_A1KUJ6 tRNA pseudouridine synthase B n=5 Tax=Neisseriaceae RepID=A1KUJ6_NEIMF Length = 319 Score = 339 bits (871), Expect = 5e-92, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 184/310 (59%), Gaps = 13/310 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+ + + R +NGVLLLDKP+G+SSN ALQK +R+++A +AGHTG LDPLATG+LP+C G Sbjct: 10 MNTGKPQKRAVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFG 69 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKF+QYLLD+DK Y +LG+ + T DA+G+I+ S + A G+I Sbjct: 70 EATKFAQYLLDADKAYTATLKLGEASSTGDAEGEIIATARADISLAEFQTACQALTGNIR 129 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+P M+SALK++GK LYEYAR+GI + R+ R ITVY + + + + + CSKGTYI Sbjct: 130 QVPPMFSALKHEGKPLYEYARKGIVIERKPRDITVYAIDIAEFDAPKAVISVRCSKGTYI 189 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT+ +D+ + +G AH+ LRR + + + + TLE L L E D L Sbjct: 190 RTLSEDIAKHIGTFAHLTALRRTETAGFTIAQSHTLEALANLNETER----------DSL 239 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+P D + +P L + + G R P + VRV ENG+F+G+ E Sbjct: 240 LLPCDVLVAHFPQTVLNDYAVHMLQCGQRPRFEEDLPSDTPVRVYT-ENGRFVGLAEYQK 298 Query: 300 E-GRVAPRRL 308 E R+ RL Sbjct: 299 EICRLKALRL 308 >UniRef50_Q1QSZ2 tRNA pseudouridine synthase B n=3 Tax=Proteobacteria RepID=TRUB_CHRSD Length = 307 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 141/312 (45%), Positives = 197/312 (63%), Gaps = 16/312 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RRRG I+GVLLLDK G+SSN ALQ+V+R+Y+A +AGHTG LDP+ATG+LP+C G Sbjct: 1 MAR-RRRGTPIDGVLLLDKAPGVSSNRALQQVRRLYDAQKAGHTGTLDPMATGLLPVCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFS YLLD+DK YR RLG+ TDT DA+G ++E V + AAL FRG++ Sbjct: 60 EATKFSAYLLDADKTYRTWVRLGEVTDTGDAEGTVIEHHSVPALDERDIEAALAGFRGEV 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 EQ+P MYSALK+QG+ LYE AR+G V R AR +TVY++ + E ELE+ CSKGTY Sbjct: 120 EQVPPMYSALKHQGRPLYELAREGKHVERAARRVTVYDMRLLSCEAEGFELEVRCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ +D+G LGCGAH+ LRRL + + M L +L + + Sbjct: 180 IRTLAEDIGHALGCGAHITSLRRLRSGPFEADAMHAFSALEDLDAASR----------EA 229 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNP--VRTSGAPLEGLVRVTEGENGKFIGMGEI 297 L+P+D+ + P + + ++S +G + T+G + R+ + F+G+ + Sbjct: 230 RLLPVDTMLTHLPSLEVAASASRRLLHGQRAQIDTAGLAAQSTARLY--RDAAFLGLVTV 287 Query: 298 DDEGRVAPRRLV 309 + G VAPRRL+ Sbjct: 288 TECGEVAPRRLL 299 >UniRef50_C7GDK4 tRNA pseudouridine 55 synthase n=6 Tax=Clostridiales RepID=C7GDK4_9FIRM Length = 321 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 113/310 (36%), Positives = 172/310 (55%), Gaps = 10/310 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ + K +G +S D + K++ I + GHTG LDP A G+LP+CLG+ATK L Sbjct: 12 INGIINVYKEKGYTSFDVVAKLRGILKTKKIGHTGTLDPDAEGVLPVCLGKATKVCDLLT 71 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D +K Y + LG+ TDT D G ++EE PV + EQ+ A+ +F G+ Q+P MYSALK Sbjct: 72 DKNKEYVAVMLLGKVTDTQDTTGTVLEEHPVEVTEEQVKEAVLSFTGEYMQVPPMYSALK 131 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKL + AR G+ V R+ARP+ +Y + I+ E + + + CSKGTYIRT+ D+GEK Sbjct: 132 VNGKKLCDLARAGVTVERQARPVQLYSIEIIKMELPRVCMRVRCSKGTYIRTLCQDIGEK 191 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ--AEQQDIPAAELLDPLLMPMDSPA 248 L CGA + L R VS++ V+ + L + E V++ + Q + + +DS Sbjct: 192 LSCGACMESLLRTKVSEFCVQDALRLSEIEERVQKAAGQTQSEQWNAEMFDFIYAVDSVF 251 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGA------PLEGLVRVTEGENGKFIGMGEIDD-EG 301 Y + + NGN ++ + VR+ + E G+FIG+ E + G Sbjct: 252 LQYKKAVICKEWNKLLYNGNRMKKDMFVSYQKDWEQQKVRIYD-EEGRFIGIYEYSEIHG 310 Query: 302 RVAPRRLVVE 311 P +L +E Sbjct: 311 DYKPVKLFME 320 >UniRef50_C1D8X0 TruB n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8X0_LARHH Length = 315 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 136/318 (42%), Positives = 190/318 (59%), Gaps = 20/318 (6%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +PR R ++GVLLLDKP GM+SN ALQ+ + ++ A + GHTG LDPLATG+LP+C GEA Sbjct: 5 KPRIERRPLDGVLLLDKPCGMTSNTALQRARWMFRAQKGGHTGVLDPLATGLLPLCFGEA 64 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 TKFS +LLD+DK YR R G + T D +G+I P F EQL A + F G I+Q+ Sbjct: 65 TKFSAFLLDADKGYRATLRFGAVSSTLDREGEITPVAPPAFDREQLDAVIRDFTGVIDQV 124 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALK+QGK LYEYAR G+E+ R+ R +T++ + + +G +++ CSKGTYIRT Sbjct: 125 PPMYSALKFQGKALYEYARAGVEIERKVRQVTIHRIDLLAFDGETAVMDVACSKGTYIRT 184 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+GE+LGCGA++ LRR + + +E+ VTLE L L E D LL+ Sbjct: 185 LAADIGERLGCGAYLTDLRRTTTAGFRLEQTVTLEQLEALDESGR----------DGLLL 234 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTS---------GAPLEGLVRVTEGENGKFIG 293 P D S P V + +G P A +R+ E+G+F G Sbjct: 235 PADILVSHLPKVVVDEADFQRMTHGQPAAVDPEKAVQRDEKAATISRLRLY-AEDGRFFG 293 Query: 294 MGEIDDEGRVAPRRLVVE 311 +GEI +GR+ P R++ + Sbjct: 294 LGEIRADGRLWPDRMLAK 311 >UniRef50_B3PI98 tRNA pseudouridine synthase B n=5 Tax=Gammaproteobacteria RepID=B3PI98_CELJU Length = 319 Score = 337 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 156/322 (48%), Positives = 209/322 (64%), Gaps = 18/322 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R+GR ++GVLLL KP GM+SN ALQ+ KR++ A +AGHTG+LDPLATG+LP+C GEATK Sbjct: 3 KRKGRPVDGVLLLHKPAGMTSNQALQRAKRLFFAEKAGHTGSLDPLATGVLPLCFGEATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIP 123 FSQ+LLD+DK YR RLG TDT DADG ++E R + QL +ALD FRG+I Q+P Sbjct: 63 FSQFLLDADKGYRTCIRLGITTDTCDADGDVLETRSAAAITRAQLDSALDAFRGNILQVP 122 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---ELELEIHCSKGTYI 180 MYSALK G+ LY+ ARQG+EV RE R +T++ L + E+EL+I CSKGTYI Sbjct: 123 PMYSALKLNGQPLYKIARQGVEVEREPRAVTIHSLDVLAFRPGEVAEVELDIRCSKGTYI 182 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R+I +DLG LGCGAHV L R + ++ + LE L E+ + LD Sbjct: 183 RSIAEDLGRALGCGAHVKVLHRSLAGSFGEDQCIGLEQLEADYERG------GYDALDAH 236 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG----APLEGLVRVTEGENG----KFI 292 L+ D+P + P V+LP S+ YF+ GNPV + A +VRV E+ +F+ Sbjct: 237 LVSADAPVASLPAVDLPANSAYYFRQGNPVMDTKVYRIARQGDIVRVFCAESAQSPRQFL 296 Query: 293 GMGEIDDEGRVAPRRLVVEYPA 314 G+GEI D+GRVAP+R++ A Sbjct: 297 GLGEITDDGRVAPKRIIANRSA 318 >UniRef50_A8PNK9 tRNA pseudouridine synthase B n=1 Tax=Rickettsiella grylli RepID=A8PNK9_9COXI Length = 309 Score = 336 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 150/312 (48%), Positives = 213/312 (68%), Gaps = 13/312 (4%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R + R I G+LLLDKP+GM+SN ALQKVK+++ A++ GHTG+LDPLATG+LP+CLG Sbjct: 1 MQALRSKKRAITGILLLDKPKGMTSNQALQKVKQLFLADKIGHTGSLDPLATGLLPLCLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 EATKFSQ+LL++DKRY V ARLG +T+T DA+G++++ P+ +S +L A L FRG I Sbjct: 61 EATKFSQFLLNADKRYVVSARLGIKTNTGDAEGEVIKSCPIADYSLNELEAILSHFRGSI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKG 177 Q P M+SALKY+G+ LY+ ARQGI V R R + ++ L + ++ L LEI CSKG Sbjct: 121 LQTPPMFSALKYKGQPLYKLARQGIVVERRPRTVKIHCLHLLESNEDKSVLSLEIKCSKG 180 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIRT+I+D+GE LGCGA+V LRRL V+ Y ++MV+L+ L+ L + + Sbjct: 181 TYIRTLIEDIGESLGCGAYVQNLRRLGVANYCADQMVSLDELQALSQNERYE-------- 232 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI 297 L+ +DS S++P+ + ++ Y G + P +GL+R+ EN +FIG+GEI Sbjct: 233 --KLLNLDSLLSEWPIFKVSQAAAYYLYCGRTLLLPNLPKQGLLRLCLKENDRFIGIGEI 290 Query: 298 DDEGRVAPRRLV 309 + GRV PRRL+ Sbjct: 291 LENGRVMPRRLI 302 >UniRef50_Q2SML1 tRNA pseudouridine synthase B n=3 Tax=Gammaproteobacteria RepID=TRUB_HAHCH Length = 311 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 147/310 (47%), Positives = 193/310 (62%), Gaps = 8/310 (2%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R R++G +NGV+++DKPQ +SN LQKVK NA +AGHTGALDPLATG+LP+C G Sbjct: 1 MAR-RKKGAPLNGVMVVDKPQDWTSNAVLQKVKYALNAQKAGHTGALDPLATGVLPLCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFSQ LLDSDK Y A LG+ T TSDADG I+ E PV S L + L FRG++ Sbjct: 60 EATKFSQLLLDSDKEYVTCAYLGRTTTTSDADGDIIAESPVPGLSVSDLESVLGKFRGNL 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +QIPSMYSALK++G LY+ ARQGIEV REAR I ++EL + + L L + CSKGTY Sbjct: 120 KQIPSMYSALKHKGTPLYKLARQGIEVEREARDIIIHELELLDYTPPFLRLRVLCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR +++D+G+ LGCGAHV+ LRR + + V + E AAE Sbjct: 180 IRNLVEDIGQVLGCGAHVMELRRTRCGPFSLADSVEFVSFAD-----ESGRQAAAEKYKE 234 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+P+DS + + L ++ G V+ S EG VR+ FIG+GE+ Sbjct: 235 RLLPIDSSVQQFSEIILDEANTGSIIQGQTVKISPLSSEGKVRLYTNRRH-FIGLGEVMS 293 Query: 300 EGRVAPRRLV 309 +G V P RL+ Sbjct: 294 DGTVKPVRLL 303 >UniRef50_A1WXU9 tRNA pseudouridine synthase B n=4 Tax=Gammaproteobacteria RepID=TRUB_HALHL Length = 304 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 150/313 (47%), Positives = 199/313 (63%), Gaps = 10/313 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M++ RR GR++ GVLL DKP G++SN ALQ+VKR++ A +AGHTG+LDPLATG+LPIC G Sbjct: 1 MAK-RRGGRNVTGVLLFDKPAGVTSNKALQQVKRLFGARKAGHTGSLDPLATGLLPICFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 +ATK S +LLD+DKRY V +LG TDT DA+G + V E + L FRG I Sbjct: 60 DATKVSGFLLDADKRYVVTCKLGVATDTGDAEGTERDRAEVPALDEEAVERGLTGFRGPI 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +Q+P MYSA+K+QG++LY+ ARQG+EV RE R + +Y+L + G+ELEL +HCSKGTY Sbjct: 120 DQLPPMYSAIKHQGQRLYDLARQGVEVEREPRRVEIYDLQLVAVRGDELELSVHCSKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ +D+ + LG HV LRRL + Y M T E L EQ E LD Sbjct: 180 IRTLAEDIAQALGTVGHVCALRRLGLGPYQDPAMWTEEMLAARAEQGR-------EALDA 232 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 L+PMDS Y V L + + G PV AP EG +R+ + G F+GMG+ D Sbjct: 233 TLLPMDSALQQYTGVELADDLAYFVVQGQPVFVPKAPSEGWLRLYD-RGGNFLGMGQALD 291 Query: 300 EGRVAPRRLVVEY 312 +GR+ P+RLV Sbjct: 292 DGRIGPKRLVARR 304 >UniRef50_D0L0S4 tRNA pseudouridine synthase B n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0S4_HALNC Length = 318 Score = 334 bits (856), Expect = 3e-90, Method: Composition-based stats. Identities = 157/324 (48%), Positives = 206/324 (63%), Gaps = 22/324 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSR RRRGR+ING+LLLDKP G+SSN ALQ+VK ++ A +AGHTG+LDP ATGMLP+C G Sbjct: 1 MSR-RRRGREINGILLLDKPIGLSSNQALQRVKHLFQAAKAGHTGSLDPEATGMLPLCFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 AT+ S LLD+DK YRV RLG RT+T D +G ++EERPV +AEQ+ L FRG + Sbjct: 60 HATRVSGLLLDADKTYRVTGRLGLRTETGDMEGAVIEERPVPELTAEQIETYLAPFRGLV 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +Q+P MYSALK GK+LYE AR G V R+AR I Y + + +G + +L +H SKG Y Sbjct: 120 DQVPPMYSALKVNGKRLYELARAGEVVERKARSINFYRIELLNFDGQDFDLLVHSSKGAY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE-------------RMVTLEHLRELVEQA 226 IRT+I+D+GE +GCGA V LRR+ V + E M TL+ L +L E Sbjct: 180 IRTLIEDIGEAVGCGAVVAKLRRIGVGPWLTEWPEAAGDVPAKSATMWTLDELIKLNES- 238 Query: 227 EQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEG 286 A + ++P DS YPVV L S+ + ++G+PV AP G + G Sbjct: 239 -----DAEMAIKHAILPTDSALERYPVVQLDADSAFHIRHGHPVFVPKAPQTGWFCIY-G 292 Query: 287 ENGKFIGMGEIDDEGRVAPRRLVV 310 + F+GMGE+ D+GRVAPRRL Sbjct: 293 PDDLFLGMGEVLDDGRVAPRRLFA 316 >UniRef50_C0GIW2 tRNA pseudouridine synthase B n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIW2_9FIRM Length = 294 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 112/302 (37%), Positives = 174/302 (57%), Gaps = 14/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + KP GM+S++ + ++R+ + R GHTG LDP A G+LP+CLG+AT+ S+Y+L Sbjct: 1 MNGIINILKPPGMTSHNVVSFLRRLSSMRRIGHTGTLDPGAAGVLPVCLGQATRVSEYVL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 DK YR LG+ TDT DA G +V E+ V + +++ L +F G QIP MYSA+ Sbjct: 61 HMDKVYRAELTLGKSTDTEDASGTMVAEQAVPVLNKQEITKVLSSFVGQQTQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYE ARQG EV R+AR I VY + ++ + ++ ++ CS+GTY+RT+ ++ E Sbjct: 121 KVGGKKLYELARQGGEVDRKAREIHVYSMKLLQVDKQKITFDVACSRGTYVRTLCREIAE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG H+ +L R V + ++ TLE L L ++ E L +L+ D+ Sbjct: 181 KLGTVGHMSFLLRTGVGPFLLQDSFTLEELSALGQK---------ESLSAVLLSADTALG 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTS--GAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P ++L + NGN + LVR+ E +F+ +G I EGR+ P + Sbjct: 232 HLPAISLSHQQAGRVANGNTISLDTVDLSEGSLVRIY-AEKQQFLAVGRI-KEGRLKPEK 289 Query: 308 LV 309 + Sbjct: 290 VF 291 >UniRef50_C4ZJR7 tRNA pseudouridine synthase B n=4 Tax=Betaproteobacteria RepID=C4ZJR7_THASP Length = 328 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 138/309 (44%), Positives = 190/309 (61%), Gaps = 12/309 (3%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 + R R+++GVLLLDKPQGMSSN ALQ +R+ A +AGHTG LDP+A+G+LP+ GE Sbjct: 22 PQRRIVRREVDGVLLLDKPQGMSSNGALQTARRLLAAAKAGHTGTLDPMASGLLPLTFGE 81 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQ 121 ATKF+Q LLD+DK Y + RLG TD+ DA+G+++ RPV L A L+ FRG+IEQ Sbjct: 82 ATKFAQMLLDADKTYEAVVRLGVDTDSGDAEGKVLATRPVAVDRAALEAVLERFRGEIEQ 141 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 +P MYSALK GK LYEYAR GIE+ R AR + ++ L + G + +HCSKGTYIR Sbjct: 142 VPPMYSALKRDGKALYEYARAGIELERAARRVVIHALELLDFAGERFTIRVHCSKGTYIR 201 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 ++ D+G LGCGAH+ LRR A+ + + +TLE L E D LL Sbjct: 202 SLAMDIGAALGCGAHLAALRRTAIGAFDLSGALTLEALEAAGEGGR----------DALL 251 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 P+D+ + +PV+ L ++ G + +GA VR G F+G+ + D+G Sbjct: 252 APVDALVAGFPVLQLDAEAARGLLQGRTLALAGAQPGAKVRAYGP--GGFLGLAQWQDDG 309 Query: 302 RVAPRRLVV 310 R+A RRL+ Sbjct: 310 RLAARRLIA 318 >UniRef50_A4G7S5 tRNA pseudouridine synthase B (TRNA pseudouridine 55 synthase) (Psi55 synthase) (TRNA-uridine isomerase) (TRNA pseudouridylate synthase) n=5 Tax=Burkholderiales RepID=A4G7S5_HERAR Length = 314 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 184/310 (59%), Gaps = 15/310 (4%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +++ ++GVLLLDK G+SSNDAL K K + NA +AGHTG LDP ATG+LP+C GEATK Sbjct: 7 KKKRVPVHGVLLLDKQAGVSSNDALIKAKWLLNALKAGHTGTLDPFATGLLPLCFGEATK 66 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 F+Q LLD+DK Y + LG T+T D +G ++ V S +Q+ A L FRGDIEQ+P Sbjct: 67 FAQDLLDADKTYETVVHLGVTTNTGDTEGDVIATHAVDISRQQIDAVLAQFRGDIEQVPP 126 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK GK LYEYAR GI + REARP+T++ L F+ + L L + CSKGTYIR + Sbjct: 127 MYSALKRDGKPLYEYARAGITLEREARPVTIHLLEFVDFQAPFLTLRVRCSKGTYIRVLG 186 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G LGCGAH+ LRR+ V + + +T+E L A L + Sbjct: 187 EDIGAALGCGAHLNALRRIQVGDLLIAQAITIEELTAKDADARI----------AALASV 236 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL-----EGLVRVTEGENGKFIGMGEIDD 299 D+ + +P + L + F +G + + +G +R+ +G+ +G G + + Sbjct: 237 DALLTSFPALRLSEELAKRFLHGQRLALGKENIVLPEGQGRMRIYRESDGQLLGTGLMQE 296 Query: 300 EGRVAPRRLV 309 +AP RL+ Sbjct: 297 YSILAPERLI 306 >UniRef50_Q3SWP7 tRNA pseudouridine synthase B n=100 Tax=Alphaproteobacteria RepID=TRUB_NITWN Length = 358 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 167/310 (53%), Gaps = 7/310 (2%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 ++PRR RD++G + LDKP GM+S A+ VKR+++A RAGH G LDPLA+G LPI LGE Sbjct: 41 NQPRRDKRDVHGWVALDKPVGMTSTQAVAVVKRLFSAKRAGHAGTLDPLASGGLPIALGE 100 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQ 121 ATK +++D KRYR G+ DT D +G+ V +AE + A L +F G IEQ Sbjct: 101 ATKTVPFVMDGRKRYRFTVAWGEERDTDDTEGRAVATSAERPTAEAIMALLPSFTGKIEQ 160 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGTYI 180 IP YSA+K QG++ Y+ AR G VP RP+ ++ L H + E C KGTY+ Sbjct: 161 IPPQYSAVKIQGERAYDLARDGEVVPLAPRPVEIHHLNLADHQDSGHSVFEAECGKGTYV 220 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + D+G LGC H+ LRR V + M+ LEHL+ L ++A + L Sbjct: 221 RALARDMGRLLGCYGHICALRRTLVGPFDETSMIPLEHLQALCDRAASGEGN----LADA 276 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV-RVTEGENGKFIGMGEIDD 299 L+P+++ D P + + + G V G + V G+ + + E+ Sbjct: 277 LLPVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPNMSGTVYVTVAGRLLALAEL-G 335 Query: 300 EGRVAPRRLV 309 G + P+R+ Sbjct: 336 NGELIPKRVF 345 >UniRef50_B4RMB1 tRNA pseudouridine synthase B n=20 Tax=Betaproteobacteria RepID=TRUB_NEIG2 Length = 306 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 124/297 (41%), Positives = 175/297 (58%), Gaps = 12/297 (4%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + R +NGVLLLDKP+G+SSN ALQK +R+++A +AGHTG LDPLATG+LP+C GEA K Sbjct: 4 KPAKRPVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEAAK 63 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPS 124 F+QYLLD+DK Y +LG+ + T DA+G+I+ S + A G+I Q+P Sbjct: 64 FAQYLLDADKAYTATLKLGEASSTGDAEGEIIAAARADISLAEFQTACQALTGNIRQVPP 123 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 M+SALK++GK LYEYAR+GI + R+ R ITVY + + + + + CSKGTYIRT+ Sbjct: 124 MFSALKHEGKPLYEYARKGIVIERKPRDITVYSIDIAEFDAPKAVISVRCSKGTYIRTLS 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 + + + +G AH+ LRR + + + + TLE L L E D LL+P Sbjct: 184 EGIAKHIGTFAHLTALRRTETAGFTIAQSHTLEALANLDETER----------DNLLLPC 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEGLVRVTEGENGKFIGMGEIDDE 300 D S +P L + + G R P + VRV ENG+F+G+ E E Sbjct: 234 DVLVSHFPQTVLNDYAVHMLQCGQRPRFEEDLPSDTPVRVYT-ENGRFVGLAEYQKE 289 >UniRef50_A8FDD4 tRNA pseudouridine synthase B n=29 Tax=Bacilli RepID=TRUB_BACP2 Length = 309 Score = 329 bits (845), Expect = 6e-89, Method: Composition-based stats. Identities = 111/314 (35%), Positives = 173/314 (55%), Gaps = 23/314 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 INGVLLL K +GM+S+D + KV++I + + GHTG LDP +G+LPIC+G ATK +YL Sbjct: 2 INGVLLLHKERGMTSHDCVFKVRKILHTKKVGHTGTLDPEVSGVLPICIGRATKIVEYLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 D K Y +G T T D G+IVEE+ V S E++ AAL F+G IEQIP M+SA Sbjct: 62 DKSKTYDAEITIGFSTTTEDQTGEIVEEKKVQNPISEEEIDAALKQFQGTIEQIPPMFSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELL-----FIRHEGNELELEIHCSKGTYIRTI 183 +K GKKLYEYAR+GIE+ R +R I+++ + + + CSKGTY+RT+ Sbjct: 122 VKIGGKKLYEYAREGIEIERPSREISIHRIERTTPALFENGTVSFRFTVLCSKGTYVRTL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D+G+KLG AH+ +L R + ++ +TL+ LR++ E+ +D L+P Sbjct: 182 AVDIGKKLGFPAHMSHLIRTGSGDFTLDECITLDELRDISEEG---------TVDEHLVP 232 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSG----APLEGLVRVTEGENGKFIGMG--EI 297 ++ + P + T + +NG + E V V +G+ + + Sbjct: 233 IERALNHLPKWEINDTLASKVENGAVLPMPDEFAHFAEEDRVAVF-APSGRCMAIYMKHP 291 Query: 298 DDEGRVAPRRLVVE 311 + + P +++ + Sbjct: 292 TKQNLMKPAKILSQ 305 >UniRef50_C4ZBF1 tRNA pseudouridine synthase B n=9 Tax=Firmicutes RepID=C4ZBF1_EUBR3 Length = 299 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 108/309 (34%), Positives = 173/309 (55%), Gaps = 19/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + K +G +S D + K++ I++ + GHTG LDP A G+LP+CLG+AT+ L Sbjct: 2 VNGIINVYKEKGYTSFDVVAKLRGIFHQKKIGHTGTLDPDAQGVLPVCLGKATRVCDLLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK Y+ + LGQ TDT D GQ++ + V + + + A+ F G +Q+P MYSALK Sbjct: 62 DKDKVYKAVLLLGQETDTQDISGQVLNQAKVNVTEQAVYDAISQFIGRQKQVPPMYSALK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYE AR+G + R+AR I V+++ + E+ + +HCSKGTYIRT+ +D+GE+ Sbjct: 122 VNGKKLYELAREGKVIERKARDIEVFDIKVESIDLPEVTMTVHCSKGTYIRTLCNDIGER 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC + L R+ V+ + +E +TL ++ V++ ++MP+D + Sbjct: 182 LGCHGCMKSLLRVRVAGFDLEHALTLSQIQSKVDEGCFD----------MVMPVDGVFEN 231 Query: 251 YPVVNLPLTSSVYFKNGNPVRT-------SGAPLEGLVRVTEGENGKFIGMGEIDDE-GR 302 P V+ + +NGN + A + RV E G F+G+ DE G Sbjct: 232 LPAVHTASDADKLVRNGNKIPAVLTDYLKHSADSDIRYRVYNHE-GIFVGVYSYLDETGE 290 Query: 303 VAPRRLVVE 311 P ++ +E Sbjct: 291 FKPVKIFME 299 >UniRef50_C4Z5P0 tRNA pseudouridine synthase B n=2 Tax=Bacteria RepID=C4Z5P0_EUBE2 Length = 303 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 167/311 (53%), Gaps = 21/311 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVL + K QG +S+D + K++ I + GHTG LDP A G+LP+C+G+ATK + Sbjct: 1 MNGVLNVYKEQGFTSHDVVAKLRGILKTKKIGHTGTLDPDAVGVLPVCIGKATKLCDLIT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K Y + LG TDT D G+IV + V S + + F G+ EQIP MYSALK Sbjct: 61 DWGKTYEAVMLLGTTTDTLDISGKIVAQSEVNVSEVDVLKVCNEFIGEYEQIPPMYSALK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIIDD 186 Y G+KLYE AR+GIE+ R+ R + + L + + + + CSKGTYIR++ DD Sbjct: 121 YNGQKLYELARKGIEIERKPRTVHINTLRVNDINLSDKQKTVTITVDCSKGTYIRSLCDD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G+KLGCGA ++ L R V ++ ++ +TL + LV + E ++ + +D Sbjct: 181 IGKKLGCGACMMKLTRTRVGEFMLDDTLTLNQISALVLKGE---------IEDRITGIDK 231 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE------GLVRVTEGENGKFIGMGEIDDE 300 SDY + S Y NGN + P + RV + + FIG+ E DE Sbjct: 232 IFSDYQEIKFAEEYSRYLHNGNKLSREQIPADAAISDNEKYRVYDS-DKCFIGVYEFRDE 290 Query: 301 GRVAPRRLVVE 311 + P ++ E Sbjct: 291 -VLYPVKIFYE 300 >UniRef50_B1XV87 tRNA pseudouridine synthase B n=2 Tax=Polynucleobacter necessarius RepID=B1XV87_POLNS Length = 303 Score = 327 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 128/307 (41%), Positives = 179/307 (58%), Gaps = 20/307 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+GV+LLDKP GMSS DA+ VK +NA++AGHTG LDP+ATG+LPICLGEATK+SQ LL Sbjct: 5 IDGVVLLDKPAGMSSQDAVTAVKHAFNADKAGHTGTLDPMATGLLPICLGEATKYSQDLL 64 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ------LAAALDTFRGDIEQIPS 124 ++DK Y + G RTDT DA+GQI+EE P+ A L A L F G I Q+P Sbjct: 65 EADKTYIAQVKFGARTDTGDAEGQIIEELPLPTFANDAEIKIALDALLPKFAGPISQVPP 124 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSALK GK LYEYAR G+E+ R R I ++ + + E LE+ CSKGTYIR + Sbjct: 125 MYSALKRDGKPLYEYARAGVELERIPRDIVIHSIRWTNINWPEATLEVSCSKGTYIRVLA 184 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +D+G LGCGAH++ LRR V +E+ +E ++ ++ + ++P+ Sbjct: 185 EDIGNALGCGAHLVGLRRTEVGHLTLEQSFKIESIQNGLQNSA-----------DYILPV 233 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVT--EGENGKFIGMGEIDDEGR 302 D+ P + + + + G V + +E LVR+ FIG + G Sbjct: 234 DALLQTLPHLTVDEQQAKRLEMGQRVPLNLPSIEALVRIYRATAAPHNFIGTADWRS-GV 292 Query: 303 VAPRRLV 309 + P+RL+ Sbjct: 293 LHPKRLI 299 >UniRef50_C6D2E9 tRNA pseudouridine synthase B n=2 Tax=Paenibacillus RepID=C6D2E9_PAESJ Length = 300 Score = 326 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 163/309 (52%), Gaps = 20/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ + KP G +S+D + KV+RI R GH G LDP+ TG+LP+CLG +T+ +YL Sbjct: 1 MDGIIAVWKPAGWTSHDVVAKVRRIVRMKRIGHAGTLDPMVTGVLPLCLGRSTRVVEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y + +LG TDT D G ++EE+ + + EQ+ L +F G+I+Q+P M+SA+ Sbjct: 61 ERPKAYEAVIQLGTATDTEDLTGTVLEEQTGIIVTREQVLQVLQSFVGEIDQVPPMFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIID 185 K GK+LYE AR+G V R++R +T++++ + + + CSKGTYIRT+ Sbjct: 121 KVDGKRLYELAREGKTVERKSRKVTIHQIDLLNVDLDADKPRFAFSVICSKGTYIRTLCV 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G LG A + L R E+ VTLE L EL + L+ ++P D Sbjct: 181 DIGRALGVPAAMAELTRTMSGGITREQCVTLEELEELQAAGK---------LEEKMLPAD 231 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVR----TSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 V + G + + LVR+ GEN FIG+ E DD+ Sbjct: 232 IAIDHLQRVQANAAVTEMALRGQKIPYNRMAASFDSSSLVRLY-GENDAFIGIFEADDQA 290 Query: 302 R-VAPRRLV 309 + P ++ Sbjct: 291 SALKPVKVF 299 >UniRef50_A9KNW1 tRNA pseudouridine synthase B n=6 Tax=Clostridiales RepID=TRUB_CLOPH Length = 307 Score = 326 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 164/316 (51%), Gaps = 27/316 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + K +G +S D K++ I + GHTG LDP A G+LP+C+G ATK L Sbjct: 1 MNGIINVYKEKGFTSFDVCAKLRGILKQKKIGHTGTLDPDAEGVLPVCVGNATKLCDLLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK Y + LG TDT D G+++E R VT + +++ ++ F +QIP MYSA+K Sbjct: 61 DKDKVYEAVLTLGIITDTEDMTGEVLERRLVTATYDRVLEVVEQFTRTYDQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--------NELELEIHCSKGTYIRT 182 G+KLYE ARQG + R+ R +T++ + + +E+ + + CSKGTYIR+ Sbjct: 121 VNGQKLYELARQGKVIERKPRTVTIHAIDILGVTPLEEQPEIVHEVRMRVSCSKGTYIRS 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+GE L CG + L R VS + +E + L + E V+ + L+ +LM Sbjct: 181 LCRDIGEALQCGGCMKSLIRTQVSIFTLENTLRLAEIEECVKN---------QTLEQVLM 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG--------LVRVTEGENGKFIGM 294 P+D P V + S + NGN + E +RV + E+ F G+ Sbjct: 232 PVDKLFLSMPKVVVKKESCKFLYNGNQLVEDNFTWEKVSDQINIDKIRVYDSED-VFTGI 290 Query: 295 GEIDD-EGRVAPRRLV 309 E D+ + P ++ Sbjct: 291 YEYDEKKNCYQPVKMF 306 >UniRef50_Q3ZXU5 tRNA pseudouridine synthase B n=5 Tax=Dehalococcoides RepID=TRUB_DEHSC Length = 300 Score = 326 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 100/302 (33%), Positives = 159/302 (52%), Gaps = 11/302 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L ++KP G++S D + KV+RIY+ R GH G LDP ATG++P+ LG +T+ +YL Sbjct: 1 MDGILNINKPFGITSFDVVAKVRRIYSQKRVGHGGTLDPYATGVIPVFLGRSTRLIEYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TD+ D++G+I + + E + L F+G+I QIP MYSA+ Sbjct: 61 SVSKTYLAEIELGVETDSYDSEGEITFRKTCDYVTREMIYKTLMDFQGEIIQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K++G +LY ARQGIEV R R T+Y + + + L + I C GTYIR++ DLG Sbjct: 121 KHRGMRLYNLARQGIEVERIPRVATIYGIELLNYTSPVLRVRIECGHGTYIRSLAFDLGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCGA++ L R A ++ + + L + L +L+P+++ Sbjct: 181 KLGCGAYLKSLVREAYGQFNLANSLDFADLEAAKCDGK---------LAGILLPLETAIG 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P V+L + NG + V V EN F+ + + + +G P ++ Sbjct: 232 HLPRVSLDEKNITRLVNGLEITLDRIDKPEAVAVYNAEN-SFVAIIQPETDGTWHPAKVF 290 Query: 310 VE 311 + Sbjct: 291 IR 292 >UniRef50_B8FR03 tRNA pseudouridine synthase B n=2 Tax=Desulfitobacterium hafniense RepID=B8FR03_DESHD Length = 294 Score = 325 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 111/306 (36%), Positives = 170/306 (55%), Gaps = 19/306 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+ + KP GM+S+D + +++RI N + GHTG LDP TG+LPIC+G+AT+ ++Y+ Sbjct: 1 MDGVINVLKPPGMTSSDVVVRLRRILNTRKIGHTGTLDPEVTGVLPICVGKATRLAEYIT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K YR G TDT DA G+I+ + P SAE + + G I QIP M+SA+K Sbjct: 61 NQGKSYRCEMIFGITTDTQDASGEILHKEPAQVSAEDFQRLIPQYLGSIRQIPPMFSAVK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDDL 187 +QGK+LYE ARQG+EV R +R I + L + E + E+ CSKGTYIRT+ D+ Sbjct: 121 HQGKRLYELARQGLEVERTSREIHIDHLQLMEWIAGEYPKAIFEVDCSKGTYIRTLCHDM 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+ LGCGAH+ L RL + ++ ++LE ++ +EQ + L+P Sbjct: 181 GQTLGCGAHMSALIRLRSGPFHIQESLSLETIQNFMEQDDYS----------FLIPYIQV 230 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV----RVTEGENGKFIGMGEIDDEGRV 303 D P V+L ++ F+NG S + + V G F+G+G E + Sbjct: 231 L-DLPRVSLSPQRALAFRNGLSTAKSQIEVGAEIGEGCEVQVFSEGNFLGIGIWR-EQAL 288 Query: 304 APRRLV 309 P ++ Sbjct: 289 CPYKVF 294 >UniRef50_D1PLN1 tRNA pseudouridine synthase B n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLN1_9FIRM Length = 297 Score = 325 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 161/302 (53%), Gaps = 11/302 (3%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L +DKP G +S D L K++ + GH+G LDP+ATG+L + +G+AT + L+ Sbjct: 5 NGILPVDKPAGWTSFDVLAKLRGALGTRKLGHSGTLDPMATGVLAVFIGKATAAADRQLN 64 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y R GQRTDT D G ++E PVT E+L A L F G+ Q+P MYSA+K Sbjct: 65 HDKTYEATLRFGQRTDTGDITGTVLETAPVTIGEEELRAVLPRFMGEQMQLPPMYSAVKI 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-ELELEIHCSKGTYIRTIIDDLGEK 190 G+ LY+ AR+G V R RPITVY + ++ + L I CSKGTYIR + +D+G+ Sbjct: 125 NGQPLYKAARKGQTVERTPRPITVYSIEYLGTPKPGDYTLRIACSKGTYIRVLAEDIGKA 184 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG A + LRR ++ + + TL + E+ + D ++P+++ + Sbjct: 185 LGVPATLAALRRTRAGEFEISQCHTLPDILAAAEKGTLTE-------DGWILPVETVFAP 237 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 P + + + NG P + A +G R + E G F+G+ + G + +L Sbjct: 238 LPTLTVNDGVKAHLFNGCP-TSHYAAADGRYRAYDKE-GTFLGLAAVKG-GVLQVEKLFC 294 Query: 311 EY 312 E Sbjct: 295 ER 296 >UniRef50_Q812X9 tRNA pseudouridine synthase B n=128 Tax=Bacilli RepID=TRUB_BACCR Length = 307 Score = 325 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 105/312 (33%), Positives = 165/312 (52%), Gaps = 20/312 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + GV+LL KP+GM+S+D + K+++I R GHTG LDP TG+LPIC+G ATK +Q+L Sbjct: 1 MEGVVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG T T DA G++VE + V + ++ L G IEQ+P M+SA Sbjct: 61 SETKTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRMEVEKVLAELTGTIEQMPPMFSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYEL------LFIRHEGNELELEIHCSKGTYIRT 182 +K GKKLYEYAR G EV R R IT++E E + CSKGTY+RT Sbjct: 121 VKVNGKKLYEYARAGQEVERPVRTITIHEFVLLDDREVFEGENISFRFRVTCSKGTYVRT 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +GEKLG +H+ +L R A ++ +E ++ E + E V+ ++ + + Sbjct: 181 LAVMIGEKLGFPSHMSHLVRTASGEFLLEDCISFEEIEENVQNG---------TVESIFI 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-- 300 +D S +P + + + KNG ++ + V + +N + + + E + Sbjct: 232 SIDEALSKFPKMVVDEKQAEKIKNGMFLKNELEITAPFITVFD-KNDRCLAIYEHHPKHP 290 Query: 301 GRVAPRRLVVEY 312 G + P +++V Sbjct: 291 GMLKPMKVLVNN 302 >UniRef50_B8I6F0 tRNA pseudouridine synthase B n=5 Tax=Clostridium RepID=B8I6F0_CLOCE Length = 309 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 169/319 (52%), Gaps = 31/319 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L + KP GM+S D + ++++ + GH G LDP A G+LP+C+G ATK ++++ Sbjct: 1 MNGILNVLKPAGMTSFDVIGYMRKLTGQKKIGHAGTLDPSAVGVLPLCIGNATKALEFMI 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + DK YR LG TDT D+ G ++ V + + ++ +F G IEQ+P MYSA+K Sbjct: 61 NKDKVYRAELTLGISTDTQDSSGTVLSFHSVDVTENDIKKSIISFMGTIEQLPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFI----------------RHEGNELELEIHC 174 GKKLYE ARQG + RE+R I +Y + I ++ L+IHC Sbjct: 121 IGGKKLYELARQGQTIERESRTIQIYNIDIIRIWDDSEVFESEGIPQEFAIKKVLLDIHC 180 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKGTYIRT+ D+GEKLGCG H+ +L R +Y ++ +T+E + +L E Sbjct: 181 SKGTYIRTLCHDIGEKLGCGGHMSFLVRTRAGQYDLDNSLTIEEVAQLSET--------- 231 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP-LEGLVRVTEGENGKFIG 293 + L+ L+P++ +Y + L + NG + RV N F+G Sbjct: 232 KSLEVHLLPVEKVFEEYDRIELNKEELFKYNNGVWLEVEKNKYKNTFYRVYN--NNSFLG 289 Query: 294 MGEIDDEG---RVAPRRLV 309 +GE+ ++G + ++ Sbjct: 290 LGEVFEKGNTLYLKSKKFF 308 >UniRef50_Q8RA40 tRNA pseudouridine synthase B n=10 Tax=Thermoanaerobacteraceae RepID=TRUB_THETN Length = 285 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 174/302 (57%), Gaps = 20/302 (6%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++GVL + KP GM+S+D + +++IY + GHTG LDP A G+LP+C+G ATKF+ YL Sbjct: 2 SVDGVLNVLKPPGMTSHDVVDFIRKIYGIKKVGHTGTLDPDAAGVLPVCMGRATKFTSYL 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 ++ DKRYR G TDT D G+IVE PV + E+L L F+G+I+QIP +YSA Sbjct: 62 MEHDKRYRFEITFGFSTDTLDKSGKIVESGPVPLFTLEKLQEVLSQFKGEIQQIPPIYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-ELELEIHCSKGTYIRTIIDDL 187 K +GKKLYEYAR+G EV +TVYEL I+++ L L++ CSKGTY+R ++ D+ Sbjct: 122 KKVKGKKLYEYARKGEEVEIPPIKVTVYELELIKYDAPHHLLLDVKCSKGTYVRALVRDI 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 +KL H+ +L R V + +E TLE ++E + P+D Sbjct: 182 CKKLEVPGHMSFLIRTEVGDFDIESSYTLEEIKE---------------GKAEVQPVDKF 226 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 +P V L SS NG +R + LV++ + G FIG+G + E ++ P+R Sbjct: 227 IK-FPSVELDEVSSNKILNGQFIRNTYNVENSLVKLYDNH-GIFIGIGVAEGE-KIRPKR 283 Query: 308 LV 309 L Sbjct: 284 LF 285 >UniRef50_Q5WFU5 tRNA pseudouridine synthase B n=2 Tax=Bacillaceae RepID=TRUB_BACSK Length = 302 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 149/307 (48%), Gaps = 20/307 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+++LDKP+G +S+D + ++++ + + GHTG LDP G+LPIC+G+ATK +Y+ D Sbjct: 5 GIVVLDKPKGWTSHDCVHQMRKWFQTRKVGHTGTLDPEVDGVLPICIGKATKVVKYMSDY 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y G T T DA G++VEE+ V F+ ++ A L F G IEQ P YSA+K Sbjct: 65 DKTYIGEVTFGVATTTEDAHGEVVEEKRVNKPFTRTEIEALLQAFIGKIEQTPPYYSAVK 124 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH-----EGNELELEIHCSKGTYIRTIID 185 GK+LYEYAR GIEV R R + + L + C+KGTYIRT+ Sbjct: 125 VNGKRLYEYARAGIEVERPTRTVEIKALTLTEITTAKPGCFSFAFSVTCTKGTYIRTLAV 184 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G+K G AH+ L R A + + L E+ L P+D Sbjct: 185 DIGKKAGYPAHMSKLTRTASGPFTQADAIPLSAFAEMSLDERL----------NKLRPLD 234 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI--DDEGRV 303 + +P V +NG + S + +G + E G + + + G + Sbjct: 235 TALQHFPRVTADKELEKRIRNGAVLEKSASFGDGRF-LFYNEQGDCLALYQAHPTKAGLI 293 Query: 304 APRRLVV 310 P L Sbjct: 294 KPETLFC 300 >UniRef50_UPI000178873D tRNA pseudouridine synthase B n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178873D Length = 303 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 99/309 (32%), Positives = 160/309 (51%), Gaps = 20/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G+L + KP G +S+D + KV+ + R GHTG LDP TG+LP+CLG AT+ +YL Sbjct: 4 LEGILAVHKPAGWTSHDVVAKVRGMVRLKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQ 63 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y + RLG TDT D G +VE V + ++ AL +FRG I Q+P MYSA+ Sbjct: 64 ELPKEYHAVLRLGYSTDTEDITGNVVETADEVRVTRDEALEALQSFRGQISQVPPMYSAV 123 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE----GNELELEIHCSKGTYIRTIID 185 K GK+LYE AR+G V R++R +T++E+ + E+ + CSKGTYIRT+ Sbjct: 124 KINGKRLYELAREGKTVERKSRTVTIHEIEMTDFDAEGEYTEISFRVLCSKGTYIRTLCV 183 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G KLG + ++ L R + + +TLE + + ++ E L L+P+D Sbjct: 184 DIGRKLGLPSVMVKLVRTISAGITEAQCLTLEQIEQFMKD---------ETLQTRLIPVD 234 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRT----SGAPLEGLVRVTEGENGKFIGMGEIDDE- 300 + + G + + +R+ + + F+G+ + +E Sbjct: 235 QAIHHLAKHTVSEEKAEAALKGQRLSSRAVEPAVDSSEPIRLYDIKEN-FLGIYKRQEET 293 Query: 301 GRVAPRRLV 309 G + P ++ Sbjct: 294 GAIVPVKVF 302 >UniRef50_A5UZQ6 tRNA pseudouridine synthase B n=5 Tax=Chloroflexaceae RepID=A5UZQ6_ROSS1 Length = 300 Score = 322 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 101/301 (33%), Positives = 158/301 (52%), Gaps = 8/301 (2%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L +DKP GM+S+D + +++R+ R GH G LDP ATG+L + LG AT+ +Y+ Sbjct: 1 MHGFLNIDKPAGMTSHDVVARIRRLSGQRRVGHAGTLDPAATGVLVVALGGATRLIEYVQ 60 Query: 71 DSD-KRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 K+YR LG T T DADG+I+ P+ E + AL RG I Q P MY+A Sbjct: 61 HQTLKQYRATVCLGVTTTTDDADGEIIARHPLPPLDRETVERALAPLRGTIWQTPPMYAA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 L ++G++LYE AR G+ V R + + L + + L L++ C GTYIR + DLG Sbjct: 121 LHHEGRRLYELARAGVTVETPPRQVHIERLDLVAFDPPLLTLDVVCGSGTYIRALARDLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCGAH+ LRR AV + +E + L L E+A+ + +P ++++ L+P D Sbjct: 181 AALGCGAHLAALRRTAVGTFRIEDALPLRVLE---EEAQAEALPTSDIVRRHLLPPDIAV 237 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 +D+ V + S+ ++G P+ +G I + D P ++ Sbjct: 238 ADWYAVQVDEASARRLRHGMPLVAP--SGAAPRARAHAPDGTLIAILRF-DGTYWRPIKV 294 Query: 309 V 309 Sbjct: 295 F 295 >UniRef50_A8MFB1 tRNA pseudouridine synthase B n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=TRUB_ALKOO Length = 299 Score = 322 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 119/311 (38%), Positives = 180/311 (57%), Gaps = 24/311 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L + KP GM+S+D + V++ N + GHTG LDP A G+LPIC+G+ATK SQ+LL Sbjct: 1 MNGILNILKPPGMTSHDVVSVVRKKLNMKKVGHTGTLDPNAAGVLPICIGQATKISQFLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K+YR LG T+T D DG+I+ +R VT S +++ A+ +F G+ +QIP MYSA+K Sbjct: 61 DGKKKYRAELTLGIETNTEDIDGEILRQREVTSSPDEIREAVLSFIGEYKQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +GKKLYE ARQG+E+ R R +T+Y + I ++ ++ CSKGTYIRT+ D+GE Sbjct: 121 IKGKKLYELARQGVEIERAERTVTIYHIEIIEIFKEKVIFDVLCSKGTYIRTLCKDIGEV 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCG + +L R A S + ++ +T+E L+ L E ++ +L+PMD P Sbjct: 181 LGCGGVMSFLLRTASSDFSLDTAITIEELQAL------------ENVEDILLPMDYPLQH 228 Query: 251 YPVVNLPLTSSVYFKNGNPVRTS------GAPLEGLVRVTEGENGKFIGMGEIDDE---- 300 + S NGN + ++ P+ V V +F+G G + +E Sbjct: 229 MSKAIVKSAYSKQVLNGNRIYSNYLIDTIHEPIGQEVCVYL--EKEFVGFGIVRNEDHNQ 286 Query: 301 GRVAPRRLVVE 311 + RL+ E Sbjct: 287 KYIKILRLLFE 297 >UniRef50_A1HSB7 TRNA pseudouridine synthase B n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSB7_9FIRM Length = 292 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 112/303 (36%), Positives = 164/303 (54%), Gaps = 18/303 (5%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + KP GM+S+DA+ V+R+Y R GH G LDP A G+LP+ +G AT+ +Y D+ Sbjct: 4 GILNILKPPGMTSHDAVAFVRRLYGVKRVGHAGTLDPAAAGVLPVFVGAATRLIEYTADA 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK YRV +G+ TDT D G I+ P V L A L F G+IEQIP MYSA+K Sbjct: 64 DKSYRVEMTVGRETDTGDDTGNIIRTAPCVLPPISDLDALLQEFTGEIEQIPPMYSAIKI 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 G+KLY+ ARQGI V R+ R I + ++ I + ++ CSKGTYIRT+ D+G +L Sbjct: 124 GGQKLYDLARQGIIVERQPRRIKINKIQLIAVREQRIYFDVDCSKGTYIRTLCTDIGRRL 183 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GC A + +L R V + + +TLE + E+A L D + + Sbjct: 184 GCPAVMSFLVRTRVGNFQLTEALTLEEIAAEKERA--------------LQAPDLAVAHF 229 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR-VAPRRLVV 310 P + L + + G VR +G++R+ + +FIG+GE G + P ++V Sbjct: 230 PPIFLTVAQAKAIVQGQAVRID-CRNQGMIRLY-NDQKQFIGIGEKQGPGAPLRPVKIVC 287 Query: 311 EYP 313 P Sbjct: 288 TNP 290 >UniRef50_Q6F7I5 tRNA pseudouridine synthase B n=20 Tax=Proteobacteria RepID=TRUB_ACIAD Length = 318 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 140/306 (45%), Positives = 191/306 (62%), Gaps = 14/306 (4%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + R ++GV LL+KP G+SSN LQKV+ ++ A +AGHTGALDPLATG+LPICLGEATK Sbjct: 24 KISRRPVSGVFLLNKPLGLSSNGVLQKVRWLFRAQKAGHTGALDPLATGLLPICLGEATK 83 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIP 123 FS YLLDS KRY+ + +LGQ T T D +G++V+ R V + + L LD FRGDI+Q+P Sbjct: 84 FSHYLLDSTKRYQTVVKLGQVTTTGDVEGKVVQSRSVPPLTRDMLELVLDGFRGDIQQVP 143 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 MYSALK G+ LYE ARQGIE+ REARP+T++ L + + L L++ CSKGTYIR + Sbjct: 144 PMYSALKRDGRPLYELARQGIEIEREARPVTIHALKLVDFDTESLTLDVTCSKGTYIRVL 203 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 +D+GE LGCG H+ L R+ + + TLE+L +L E D LL+ Sbjct: 204 GEDIGEALGCGGHLTALHRVQTGHFELVPEYTLEYLEQLNETER----------DMLLLA 253 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 +P P V +P YF NG S + + V E + +G+ EI D+ R+ Sbjct: 254 PYAPVDYLPQVQIPEGRLKYFCNGQE---SNIDHDAVPEVLVFEGERCLGLAEITDKKRL 310 Query: 304 APRRLV 309 P+RL+ Sbjct: 311 VPKRLL 316 >UniRef50_A3WPV5 TRNA pseudouridine 5S synthase n=1 Tax=Idiomarina baltica OS145 RepID=A3WPV5_9GAMM Length = 319 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 143/318 (44%), Positives = 199/318 (62%), Gaps = 17/318 (5%) Query: 1 MSRPR-RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M + R R+GR INGVLLLDKP+ M+SN A+Q VKR+Y A + GHTGALDPLATG+LP+CL Sbjct: 1 MGQARPRKGRPINGVLLLDKPKEMTSNRAIQVVKRLYEAQKVGHTGALDPLATGLLPVCL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 GEATKFSQYLLD+DK YRV A+LG RT TSDA+G++VE+ PV S QL + F G+ Sbjct: 61 GEATKFSQYLLDADKAYRVEAQLGVRTTTSDAEGEVVEQNPVDVSDTQLNDIIAQFTGEQ 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q PS+YSALKY+GK LY YAR+GI+VPR+ R I+V + + +G+ + L++ CSKGTY Sbjct: 121 AQTPSIYSALKYEGKPLYYYARRGIDVPRKTRTISVRAIELLHRDGDFVTLQVACSKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT++DD+G+ LGCGAHV LRR V+ + +LE L + ++ Sbjct: 181 IRTLVDDMGQALGCGAHVRELRRTHVANLTDAQQWSLEALEQCDDEQRL----------A 230 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPV---RTSGAPLEGLVRVTEGENG---KFIG 293 L P+D+ + P + + +G PV + R+ FIG Sbjct: 231 CLEPVDTLLNGLPTQTISQAEARDVMHGQPVFNRTLDTQAVGDECRLCAKSTAGHSVFIG 290 Query: 294 MGEIDDEGRVAPRRLVVE 311 + + +G++ P+R++ Sbjct: 291 VVVLRKDGKLWPKRVLAL 308 >UniRef50_Q2BH44 TRNA pseudouridine synthase B n=1 Tax=Neptuniibacter caesariensis RepID=Q2BH44_9GAMM Length = 307 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 147/302 (48%), Positives = 208/302 (68%), Gaps = 10/302 (3%) Query: 18 DKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYR 77 +KP G+SSN ALQ+V+RIY+A +AGHTGALDPLATGMLPICLGEATKFSQ+LLDSDKRY Sbjct: 2 NKPPGISSNSALQQVRRIYDAAKAGHTGALDPLATGMLPICLGEATKFSQHLLDSDKRYI 61 Query: 78 VIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDT-FRGDIEQIPSMYSALKYQGK 134 A+LG RTD+SDADG +VEE+PV + +++ A L + F G+IEQ+PSM+SALK+QG+ Sbjct: 62 TTAKLGVRTDSSDADGAVVEEKPVPTDLTEDKIDAILQSEFSGEIEQVPSMFSALKHQGQ 121 Query: 135 KLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCG 194 LY+ AR+GI+V + R +T++E+ +E++LE++CSKGTYIR+I++DLG LGCG Sbjct: 122 PLYKLARKGIQVEVKPRKVTIHEIKLTALRDDEIDLEVYCSKGTYIRSIVEDLGHILGCG 181 Query: 195 AHVIYLRRLAVSKYPVERMVTLEHLRELVEQA--EQQDIPAAELLDPLLMPMDSPASDYP 252 AHV L RL V + +RM++L+ LRELV + E+Q LD LL+P + D P Sbjct: 182 AHVKMLHRLDVGAFTADRMMSLDELRELVPENTTEEQQKGIQIELDKLLLPAWAAVDDLP 241 Query: 253 VVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVT----EGENGKFIGMGEIDDEGRVAPRRL 308 V L + +G V + L+R+ + + +F+G+ E+ E ++ P+RL Sbjct: 242 AVRLNDQQTSLIMHGQAVANANYAEGSLIRLFGTSLDSDAERFLGVAEVV-EQQLKPKRL 300 Query: 309 VV 310 + Sbjct: 301 IC 302 >UniRef50_Q8K9H3 tRNA pseudouridine synthase B n=4 Tax=Buchnera aphidicola RepID=TRUB_BUCAP Length = 312 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 156/303 (51%), Positives = 206/303 (67%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 + R++NG LLLDKP+GM+SN+ LQKVK I+ A +AG+ G LDPLATG+LPIC GEATKFS Sbjct: 5 KKRNVNGFLLLDKPKGMTSNNVLQKVKIIFKAKKAGYIGTLDPLATGILPICFGEATKFS 64 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMY 126 YL SDK Y VIARLG++T TSD+DG IV +RP+ F+ QL+ AL G + QIPSMY Sbjct: 65 NYLNASDKHYNVIARLGEKTSTSDSDGIIVRKRPILFTPIQLSLALKALTGSVNQIPSMY 124 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SA+KY+G LY+YARQGI V R R + +Y++ + + N +EL +HCSKGTYIRT+I+D Sbjct: 125 SAVKYKGIPLYKYARQGINVKRNIRCVFIYKIDLVDQKDNWIELNVHCSKGTYIRTLIED 184 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LGEKL CGAHVI LRRL + ++V L L L+ + I + +D LLMP+D+ Sbjct: 185 LGEKLFCGAHVIRLRRLKIGLLSYSKLVKLSFLENLLNEKNVVKINFFKKIDDLLMPVDT 244 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 P P + + + F+ G V S + GLVRV E +N FIG+G+I+ E + P Sbjct: 245 PVYFLPKIYISIEKLSVFRLGQKVNFSSSITNGLVRVFEKDNNTFIGLGKINSEKTLIPY 304 Query: 307 RLV 309 RLV Sbjct: 305 RLV 307 >UniRef50_Q31GK3 tRNA pseudouridine synthase B n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=TRUB_THICR Length = 303 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 128/311 (41%), Positives = 178/311 (57%), Gaps = 18/311 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +++ + I+G++LL+KP+G++SN LQ+V+R+YNA +AGHTGALDP ATG+LPICLGEATK Sbjct: 3 KKQWQKIDGIVLLNKPEGVTSNGLLQQVRRVYNAKKAGHTGALDPFATGLLPICLGEATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIP 123 S LLDSDKRY +LG TD+ D DG ++ V S L F GD+ Q+P Sbjct: 63 ISGLLLDSDKRYIATLQLGLETDSGDKDGNPLKTIAVPALSKAMLETVFSQFEGDVMQVP 122 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 MYSALK+QGK LYEYAR+GI + R ARPI +YEL I E + E+ CSKGTY+RT+ Sbjct: 123 PMYSALKHQGKPLYEYARKGIHIERAARPIHIYELKLIDFENTVVRFEVLCSKGTYVRTL 182 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 +D+ + LG H+ L R + M TLE + D L P Sbjct: 183 GEDIAKALGTVGHLTGLHRTQTGALTGDEMATLEEIE--------------LNKDAYLQP 228 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI-DDEGR 302 +D P ++L + +G + P LVR + + +FIG+GE ++ Sbjct: 229 LDLPLKHLQAIHLNAKDTDKILHGGKLAVEE-PETLLVRFYDPQQ-RFIGVGEWQQEKQL 286 Query: 303 VAPRRLVVEYP 313 + P+RL P Sbjct: 287 LKPKRLFNLNP 297 >UniRef50_C8P7Y2 tRNA pseudouridine synthase B n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P7Y2_9LACO Length = 317 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 161/309 (52%), Gaps = 19/309 (6%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + ++G++ L K +GM+S D + +++RI + GH+G LDP G+LPIC+G ATK +Y Sbjct: 17 QKMDGIIPLYKERGMTSFDCVSRLRRILKTRKIGHSGTLDPAVDGVLPICVGNATKAVEY 76 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMY 126 L+ S K Y+ +G+ T+T D DG++V + PV S EQ+ AA+ G I Q+P MY Sbjct: 77 LMQSGKIYQGELVIGRATETEDFDGRVVAQTPVPAPLSDEQVRAAMAKLTGKITQVPPMY 136 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFI------RHEGNELELEIHCSKGTYI 180 SA+K GK+LYEYAR G V R AR +T+ E + H+ + ++ CSKGTYI Sbjct: 137 SAVKVNGKRLYEYARAGETVERPARQVTITEFTLVRSHYDQEHQEQHVFFKVACSKGTYI 196 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT++ DL +LG + +L RLA + +++ ++L ++ V + + Sbjct: 197 RTLVVDLARQLGYPGAMKWLTRLASGGFTLDQTLSLADIQTAVAN---------QTIKRY 247 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 L P+D DYP V L +NG + + V +G+ + + Sbjct: 248 LYPLDYALKDYPAVELTDQQWRAVQNGGWLTAAELSPAA-AEVVLKYDGQVKALYH-QAD 305 Query: 301 GRVAPRRLV 309 P ++ Sbjct: 306 NHYQPTKMF 314 >UniRef50_UPI0000E0F5A1 tRNA pseudouridine synthase B n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F5A1 Length = 331 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 160/330 (48%), Positives = 212/330 (64%), Gaps = 22/330 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R RR+GR INGV LLDKP G SSN+ LQKV+ +Y A +AGHTGALDPLA+GMLPICLG Sbjct: 1 MGR-RRKGRAINGVFLLDKPLGESSNNVLQKVRAMYGAAKAGHTGALDPLASGMLPICLG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATKFSQ+LLD+DK Y V A LG RT TSDADG++V PVT + + + AA +F G + Sbjct: 60 EATKFSQFLLDADKTYEVTATLGIRTTTSDADGEVVSTLPVTSTEDDIRAACLSFVGASK 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 QIPSM+SALK++GK LY YARQGIE+ R AR IT++ L +R EG EL++ +HCSKGTYI Sbjct: 120 QIPSMFSALKHEGKPLYWYARQGIEIDRPARDITIFALDILRIEGVELDMRVHCSKGTYI 179 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ-DIPAAELLDP 239 R+++DD+G+ LGCGA+V L R V+ YP ++M++L+ L+ LV+ +DP Sbjct: 180 RSLVDDIGQVLGCGAYVSRLHRSQVAGYPSDKMMSLDALQTLVDTHRIDKGSEHHPYIDP 239 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNP-----------------VRTSGAPLEGL-- 280 LL+PMD P K G P V+ +G Sbjct: 240 LLLPMDIPLYALGSTVATDAQINGVKVGMPFIPAKMTPAQVDETVVDVKAMALSKDGFEQ 299 Query: 281 VRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 V+V + E+G + E+ D+G + P+R+VV Sbjct: 300 VKVYD-ESGNIYAVAELKDDGYLHPKRVVV 328 >UniRef50_A8LL26 tRNA pseudouridine synthase B n=42 Tax=Rhodobacterales RepID=TRUB_DINSH Length = 304 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 167/310 (53%), Gaps = 12/310 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R R++GR ++G +++DKP G+SSN + KV+ ++A +AGH G LDP ATG+L I LG Sbjct: 1 MGR-RKKGRAVSGWIVIDKPAGLSSNAVVGKVRWAFDAQKAGHAGTLDPEATGVLAIALG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK ++ D+ K Y RLGQ T+T D +G++ E S +++ AAL F GDI Sbjct: 60 EATKTVPFVTDALKAYEFTVRLGQATNTDDGEGEVTETSDARPSDDEIRAALPPFEGDIL 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTY 179 Q+P +SA+K G++ Y AR G E+ ARP+ V L FI R + + + LE+ C KG Y Sbjct: 120 QVPPQFSAVKIDGERAYARARAGQEMEIAARPLYVDSLTFIARPDPDHVTLEMVCGKGGY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R+I DLG LGC HV LRR + + LE L +L + LD Sbjct: 180 VRSIARDLGRALGCFGHVKSLRRTWSGPFELSDATPLETLEDLAKD---------PALDA 230 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 LMP+++ +D P + + +NGNP + E NG + +G Sbjct: 231 HLMPLETGLADLPELPCTPEGAARMRNGNPGMVRASDAEYGETAWASYNGTAVAVGTYRA 290 Query: 300 EGRVAPRRLV 309 G + P R+ Sbjct: 291 -GELHPTRVF 299 >UniRef50_B9ZLN1 tRNA pseudouridine synthase B n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZLN1_9GAMM Length = 319 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 132/329 (40%), Positives = 190/329 (57%), Gaps = 26/329 (7%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RR ++G+LLLDKP+G SS L +VK + A +AGHTGALDP ATG+LP+C G Sbjct: 1 MARARRE---VDGILLLDKPRGPSSTQVLGRVKYLLQARKAGHTGALDPRATGLLPLCFG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 +ATK S +LLD+DK Y A+LG TD++D DG I+ E PV E+L A F G Sbjct: 58 QATKVSGWLLDADKHYVAEAQLGVETDSADLDGAIIREAPVPAIEPERLRALEQQFSGAQ 117 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 EQ+P M SALK+ G++LYE AR+G+EV R RP+ ++ L L +++ CSKGTY Sbjct: 118 EQVPPMVSALKHDGQRLYELARRGVEVERPPRPVQIHALSIEAIAPERLRIDVRCSKGTY 177 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R+++ D+G LGCGA V LRR+ + MVT+E + + A ++ Sbjct: 178 VRSLVVDIGHALGCGAAVDSLRRIGHGPFEAAAMVTMEQV------EAAFEAGGAAAIEA 231 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNP-----VRTSGAPLEG----------LVRVT 284 +L ++ +P V+L +S ++G+P + + EG LVRV Sbjct: 232 MLQAPETALGHWPSVSLNAQASAAMRHGHPADPEAIESRTPGTEGAPVEAESGWPLVRVY 291 Query: 285 EGENGKFIGMGEIDDEGRVAPRRLVVEYP 313 + E G F+ +G + +GRV PRRL V P Sbjct: 292 DAEGG-FLAVGAREPDGRVRPRRLFVPAP 319 >UniRef50_C3RL16 tRNA pseudouridine synthase B n=4 Tax=Bacteria RepID=C3RL16_9MOLU Length = 283 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 22/298 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++L++KP GM+S+D + K++RI + GH G LDP ATG+L +C+ +ATK Q+L Sbjct: 4 MDGIILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLT 63 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TDT DA G+I+E + ++ A + F G EQ P +YSA+ Sbjct: 64 SESKEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAI 123 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYEYAR G +V R +TV L ++ E N ++ ++ CSKGTYIR++ DL + Sbjct: 124 KVNGKKLYEYARAGEQVEVPTRSVTVNHLEILQIENNLIKFKVGCSKGTYIRSLCYDLAK 183 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG H+ L R + +E TLE + + + ++ + Sbjct: 184 ALGYPGHMKDLIRTKSGNFSLENCFTLEQIEN---------------GEYTTVSLEEALN 228 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 Y + + +G +++ V GK + M D G + R Sbjct: 229 SYQQLVVDDE--KIIFHGKKIKSDLNEQ----VVILNRQGKVLAMYGPDGNGYLKSIR 280 >UniRef50_Q0SSD7 tRNA pseudouridine synthase B n=33 Tax=Clostridium RepID=TRUB_CLOPS Length = 294 Score = 317 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 179/309 (57%), Gaps = 22/309 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGV+ + K GM+S D + V+R+ + GHTG LDP A+G+LP+CLG+ATK Y++ Sbjct: 1 MNGVINIYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPEASGVLPVCLGKATKIIDYIM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 ++ K YRV +LG TDT D +G+++ E + +++ +++F G I+Q+P MYSAL Sbjct: 61 ENKKVYRVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFVGTIDQVPPMYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE-GNELELEIHCSKGTYIRTIIDDLG 188 K G +LYE ARQGIEV REAR IT+Y + I+ E + +++++ CSKGTYIR++ D+G Sbjct: 121 KQNGVRLYELARQGIEVHREARKITIYSIENIKIESNDNIQMDVCCSKGTYIRSLCYDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 EKL GA + L R+ + E + +E L E ELL+ ++ ++ Sbjct: 181 EKLNVGATMTALERIQNGPFIKEEAINIEDLTE-------------ELLEKHIISIEKAL 227 Query: 249 SDYPVVNLPLTSSVYFKNG-----NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 + + + +NG N + + L RV E +NG F+G+G+ D++G Sbjct: 228 DSFEKITVNEKFGKLLRNGVKVFDNRMYSEEVEFNKLYRVYE-DNGVFLGLGKRDEKG-F 285 Query: 304 APRRLVVEY 312 +L++E Sbjct: 286 KLEKLLIEE 294 >UniRef50_C0ZF47 tRNA pseudouridine synthase B n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZF47_BREBN Length = 308 Score = 317 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 103/311 (33%), Positives = 166/311 (53%), Gaps = 18/311 (5%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 ++NGVL++DKP GM+S+D + +++R+Y + GHTG LDP TG+LPIC+G AT+ +Y Sbjct: 2 SNVNGVLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGHATRLVEY 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQIPSM 125 L + KRY V+ RLG T T DA G++VE+ V + E++ A ++F G++EQ+P M Sbjct: 62 LQELPKRYDVVMRLGSTTTTEDASGEVVEQAGVDAAWITTERIQALFESFLGEMEQVPPM 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIR 181 +SA+K GK+LY+ AR+G + R+AR +T+YEL + + ++ CSKGTY+R Sbjct: 122 FSAVKVNGKRLYDLAREGTVIERQARKVTLYELTLHKISVDGDTVDVAFTCTCSKGTYMR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ DLG LG AH+ LRR+ + + + L+ + E E + L Sbjct: 182 TLCVDLGRALGYPAHMKLLRRIKSGPFQEQEAIPLQQIEEQAASGED--------ISRHL 233 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI--DD 299 + + S P + +NG G E + +G+ + D Sbjct: 234 VSIPQAISFLPSFQVKPERIKAVRNGLATALPGVTAEEGSLICLFAGEDLLGIHRVCRGD 293 Query: 300 EGRV-APRRLV 309 +G P ++ Sbjct: 294 KGLFAKPEKVF 304 >UniRef50_A8RZ93 Putative uncharacterized protein n=8 Tax=Clostridiales RepID=A8RZ93_9CLOT Length = 320 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 104/324 (32%), Positives = 165/324 (50%), Gaps = 26/324 (8%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 + + +G++ + K G +S+D + +++ I + GHTG LDP A G+LP+CLG Sbjct: 5 AARSKEHTMYHGIINVYKEPGYTSHDVVARLRGILKQKKIGHTGTLDPAAEGVLPVCLGA 64 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER---PVTFSAEQLAAALDTFRGD 118 T+ L D K Y+ + LG TDT D G I+ E ++ + EQ+ A+ F+GD Sbjct: 65 GTRLCDMLTDRSKTYQAVMLLGCETDTQDTTGTILAEDREGALSLAEEQVNEAVMGFKGD 124 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 QIP MYSALK GKKLYE AR G EV R R + + ++ R E + +E+ CSKGT Sbjct: 125 YAQIPPMYSALKVDGKKLYELARAGKEVERRPRAVQILDIKVSRIELPRVWMEVTCSKGT 184 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIRT+ D+G LGCG + +L R V ++ +E +TL+ L +L +QA ++ Sbjct: 185 YIRTLCHDIGRLLGCGGCMEHLTRTRVDRFSIEDSLTLDQLEQLRDQA---------AVE 235 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT------------SGAPLEGLVRVTEG 286 ++P++ YP + + NGNP +GA + R+ + Sbjct: 236 SCILPVEEALQSYPPLGCLPEADSLLHNGNPCFARHLDWSQSDQWKAGAEDGQMFRMYDS 295 Query: 287 ENGKFIGMGEIDDE-GRVAPRRLV 309 N +F G+ + + P ++ Sbjct: 296 -NHRFTGVYQYQKDRHWWKPWKMF 318 >UniRef50_C7I1W4 tRNA pseudouridine synthase B n=1 Tax=Thiomonas intermedia K12 RepID=C7I1W4_THIIN Length = 345 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 121/321 (37%), Positives = 170/321 (52%), Gaps = 21/321 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+ + +N VLLL+KP+G++S AL +V+R A +AGH G LDPLA G+L +C G Sbjct: 1 MNVQKTPWEAVNSVLLLNKPRGLTSQQALFRVRRRLRAAKAGHGGTLDPLADGLLMLCFG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 ATKF+Q L++DKRY + +LG RT T DA+G+IVE R V S Q+ A L F G I Sbjct: 61 AATKFAQRHLEADKRYVAVLQLGVRTTTDDAEGEIVERRAVEVSRSQVDAVLPRFIGAIS 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q P +YSALK GK LY YAR G V AR + ++ + + + ++L L +HC KGTYI Sbjct: 121 QTPPVYSALKRDGKPLYAYARAGETVEVAARTVQIHSMDVLSLQNDQLALAVHCGKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + D+GE LGCGAH+ L R A + +E+ +TL+ L L Sbjct: 181 RALARDIGEALGCGAHLAALTRTASGGFSLEQALTLDEAEALASAD----------LRSR 230 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL----EGLVRVT----EGENGKFI 292 L+P D P NL + F +G + VRV G++ + Sbjct: 231 LLPTDVLLQSSPRQNLDAAQAQRFLHGARLSGLAPDEPVVPGEDVRVYGPLAAGQDAVLL 290 Query: 293 GMGEIDDEG---RVAPRRLVV 310 G+G + + PRRL+ Sbjct: 291 GIGAWEQGAESVVLTPRRLLC 311 >UniRef50_Q0AYI5 tRNA pseudouridine synthase B n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=TRUB_SYNWW Length = 299 Score = 316 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 168/307 (54%), Gaps = 20/307 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++G L ++KPQ M+S D ++K+K++ + GH G LDP+A G+LP+ +G T+ ++ Sbjct: 1 MHGFLNINKPQAMTSFDVIKKLKKVLPRKYKLGHLGTLDPMAEGVLPVAVGCGTRIIPFV 60 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D K Y LG +DT DA G I P Q+ L FRG Q+P MYSA+ Sbjct: 61 EDETKEYIATMTLGASSDTQDAWGVITYHTPRKIEPAQVEKVLALFRGKSRQVPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG----NELELEIHCSKGTYIRTIID 185 ++GK+LYE ARQG+EV R+AR I ++EL + + +L L + CS+GTYIRT+ Sbjct: 121 HHEGKRLYELARQGLEVERKAREIEIFELELLNADWEQELPQLSLRVSCSRGTYIRTLCH 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G++LGCGA++ LRR + +E V+L+++ I E L L+P+D Sbjct: 181 DIGQELGCGAYLSSLRRSRSGCFKIEEAVSLDYI-----------IEKRENLSRALLPLD 229 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGE---IDDEGR 302 P ++ P+++L NG + +G VR+ E G+ + + E +++ Sbjct: 230 YPINNLPLISLKSAELPAIINGRQISRTGKLASPRVRLYTPE-GQLLAIAEANNYNEDTV 288 Query: 303 VAPRRLV 309 + P R+ Sbjct: 289 LQPCRVF 295 >UniRef50_C2C2D8 tRNA pseudouridine synthase B n=3 Tax=Listeria RepID=C2C2D8_LISGR Length = 312 Score = 316 bits (810), Expect = 7e-85, Method: Composition-based stats. Identities = 97/317 (30%), Positives = 156/317 (49%), Gaps = 20/317 (6%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 + + G++ L K GM+S+D + ++++I + + GHTG LDP G+LPIC+G ATK + Sbjct: 2 EEKGMEGIIPLWKEPGMTSHDCVFRLRKILHTKKVGHTGTLDPDVAGVLPICIGRATKLA 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSM 125 +Y+ K Y +G T T DA G+I+ E+ V SAEQ+ A+ G+I Q+P M Sbjct: 62 EYVTAEGKTYIADVSIGTATTTEDASGEIIAEKAVSEISAEQIEEAIHQLEGEIAQVPPM 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR------HEGNELELEIHCSKGTY 179 YSA+K G+KLYEYAR G V R R + ++ + + E +EI C KGTY Sbjct: 122 YSAVKVNGRKLYEYARNGETVDRPVRKVQIHAIKRLDAPQSITAEAPTFTIEISCGKGTY 181 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+ +GE LG AH+ L+R + E L + +++ +Q Sbjct: 182 IRTLAVMIGEILGYPAHMSALKRTRSGYFETEHCFRLAEIEAMMKAEDQ----------H 231 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPV-RTSGAPLEGLVRVTEGENGKFIGMGEID 298 L+P++ ++ P + + NG + A + RV GK + + + Sbjct: 232 FLLPLEKGIAEMPRIEVNAAVHSEILNGKVMPEYLFAAVNNEARVAVFHEGKLVAIYKPH 291 Query: 299 DEG--RVAPRRLVVEYP 313 E P +++ P Sbjct: 292 PEKAACWKPEKVIELRP 308 >UniRef50_D1CFW9 tRNA pseudouridine synthase B n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFW9_THET1 Length = 301 Score = 316 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 97/309 (31%), Positives = 161/309 (52%), Gaps = 14/309 (4%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 R + +NG ++++KP G++S + ++K++++A R GH G LDP ATG+LPI LG+A Sbjct: 4 RKNQSKEFLNGFIVINKPLGVTSQWVVNRIKKLFSARRVGHVGTLDPFATGVLPIALGKA 63 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQI 122 + ++ + K Y G +T T D +G I+ + + S + +A L F G IEQ Sbjct: 64 NRLAEVIHSQPKSYVAELSFGFKTSTGDLEGDIIAQSDIIPSPKDIAEILPEFIGQIEQT 123 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P YSA+K +G++ YE ARQG E+ R + +Y L + L+L I CS GTYIR+ Sbjct: 124 PPKYSAIKVEGRRAYELARQGQELTLPTRKVEIYSLEALEFRACTLKLAISCSSGTYIRS 183 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + +D+ E+LG ++ L R +V + +E +T+E L + + + L+ Sbjct: 184 LAEDIAERLGAYGYLSNLVRTSVGAFSIESSITIEELESVGDYLQP----------ALIH 233 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE--GLVRVTEGENGKFIGMGEIDDE 300 P D + P V L NG V+ + E LVR+ NG+ +G+ E + Sbjct: 234 PPDDALTHLPAVMLDERDVQRISNGATVKMAHISEEPIPLVRIYSA-NGEIVGLAE-SRD 291 Query: 301 GRVAPRRLV 309 + PR ++ Sbjct: 292 NTLFPRIML 300 >UniRef50_Q2Y7W4 tRNA pseudouridine synthase B n=3 Tax=Nitrosomonadaceae RepID=TRUB_NITMU Length = 313 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 128/313 (40%), Positives = 189/313 (60%), Gaps = 22/313 (7%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 R I+GVLLLDK G+SSN ALQ KRI++A++AGHTG LDP+ATG+LPIC GEATKFS Sbjct: 6 KRHISGVLLLDKASGLSSNQALQTAKRIFSAHKAGHTGTLDPMATGLLPICFGEATKFSS 65 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQI-----VEERPVTFSAEQLAAALDTFRGDIEQI 122 LL +DK Y + RLG + T DA+G+I +E + V + E++ A +F G I Q+ Sbjct: 66 ALLGADKTYEAVLRLGYMSTTGDAEGEISIAAGMESQYVDLTREKIEAVRKSFIGVITQV 125 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSA+K++GK +Y +AR G+E+ R+ R IT+++L ++GNE+ + + C GTYIRT Sbjct: 126 PPMYSAIKHRGKPMYTFARAGVEIERQPRAITIHDLSIEAYQGNEMRIRVTCGSGTYIRT 185 Query: 183 IIDDLGEKLGC-GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 + +DLG LGC GA++ LRR A+ + + + TL L + D L Sbjct: 186 LAEDLGHALGCGGAYLTALRRSALGGFDLPQAYTLTGLEAMPPSQR----------DSCL 235 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL-----VRVTEGENGKFIGMGE 296 +P DS P V + +++ G + + E L VR+ + +F+G+GE Sbjct: 236 LPADSLLRSLPPVVVDSAAALSLLQGRAIPGTHPAGESLLPGRQVRLYDKAQ-RFLGLGE 294 Query: 297 IDDEGRVAPRRLV 309 I EG ++P+RL+ Sbjct: 295 ISTEGYISPKRLI 307 >UniRef50_C6IW07 tRNA pseudouridine synthase B n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IW07_9BACL Length = 305 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 98/310 (31%), Positives = 146/310 (47%), Gaps = 20/310 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + KP G +S+D + K + I R GHTG LDP TG+LP+CLG AT+ +YL D Sbjct: 6 GILPIHKPAGFTSHDVVAKCRGILKMKRIGHTGTLDPAVTGVLPLCLGRATRMVEYLQDL 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y LG TDT D G+I+E+ V + E + L F G I QIP MYSALK Sbjct: 66 PKEYEATLVLGVATDTEDMTGEIIEQVNEVQVTEEDVRRVLSRFVGTISQIPPMYSALKQ 125 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHE----GNELELEIHCSKGTYIRTIIDDL 187 GK+LYE AR+G V R+ R +T+Y+L + + CSKGTYIRT+ D+ Sbjct: 126 DGKRLYELAREGKTVERKPREVTIYQLELLAFHPEGLHPRISFRALCSKGTYIRTLCVDI 185 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G LG A + L+R + +TL+ + L L+P+D Sbjct: 186 GRALGVPAAMTELKRTMSAGITESHCLTLDEVARHAASG---------SLQDYLLPVDRA 236 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVR----TSGAPLEGLVRVTEGENGKFIGMGEIDDEGR- 302 P + G + + +R+ E +F+G+ +++ + Sbjct: 237 VQHLPAHTVAAEKVKAALQGQRLSPSVVSPAVKRGETLRLYSPEQ-QFLGIFRVEEGTKA 295 Query: 303 VAPRRLVVEY 312 V ++ + Sbjct: 296 VKAVKVFLPE 305 >UniRef50_UPI0000E87C37 tRNA pseudouridine synthase B n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C37 Length = 300 Score = 314 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 190/310 (61%), Gaps = 13/310 (4%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +P+R DI+GV+L+DKP G SSN AL K+K I++ +AGHTG LDPLATG+LPICLGEA Sbjct: 2 QPKRIKLDISGVILVDKPLGYSSNQALSKIKWIFSPKKAGHTGTLDPLATGLLPICLGEA 61 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQ 121 TKFS +LL+SDK Y +LG R++T D++G IV+ + +++ L F G EQ Sbjct: 62 TKFSSFLLESDKTYEASIKLGFRSNTGDSEGVIVDLNVQHFPALKEIKETLKQFSGMQEQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 P MYSALK++GK LYEYAR+G E+ R+ R I + L I + N L++ + CSKGTYIR Sbjct: 122 TPPMYSALKFKGKPLYEYARKGEEIERKKRSINIVSLDLIDYSDNVLKITVECSKGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G+KL G ++I LRR A+ VE+ TL+ + ++A D L+ Sbjct: 182 TLASDIGDKLNTGGYLIALRRTAIGSVNVEQAKTLDMIEASDKEAR----------DALI 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 P+D + ++L ++ K+G + G EG+ R+ ++ F+G+G +D G Sbjct: 232 FPIDEFLNYLDDISLVPSAEEAIKDGKTLLFKG-MKEGIYRLY-NKDKFFLGLGTLDRHG 289 Query: 302 RVAPRRLVVE 311 + RRL+ Sbjct: 290 YLKVRRLLAL 299 >UniRef50_D2MK32 tRNA pseudouridine synthase B n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MK32_9BACT Length = 325 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 102/315 (32%), Positives = 159/315 (50%), Gaps = 25/315 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVL + KP G +S+D + KV+R+ + GH G LDP ATG+LP+ LG+ T+ S +LL Sbjct: 19 HGVLNVSKPAGWTSHDVVAKVRRLLQVPKVGHAGTLDPAATGVLPVLLGKGTRLSAFLLH 78 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y + RLGQ T T DA G IV + PV E + A+ F G+ +Q+P MYSA+K Sbjct: 79 WDKEYEAVLRLGQETTTQDATGAIVRDCPVPELRPETVHEAVAQFHGEQQQVPPMYSAVK 138 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+ LY+ AR G + R +RP+T+Y + ++ L + CSKGTYIRT+ D+G Sbjct: 139 IGGQPLYKAARAGKTLDRPSRPVTIYHIEIRALALPDVTLRVRCSKGTYIRTLCADIGRV 198 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG G H+ L R V + ++R +L+ + + + + +D + Sbjct: 199 LGVGGHLSRLIRSRVGPFHLDRAWSLDDIGRVDDLFGHPG---------AFLNLDEALAH 249 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGA--------PLEGLVRVTEGENGKFIGMGEIDDEG- 301 P V + NG PV + P+E L RV + + G+ + +G+ Sbjct: 250 LPAVVVDPAMVEKVMNGAPVSGATLWSEDHRETPVETLFRVKD-DMGRLLALGKWAPSTL 308 Query: 302 -----RVAPRRLVVE 311 + ++ E Sbjct: 309 DVPGYELQMVKVFAE 323 >UniRef50_Q4L5X4 tRNA pseudouridine synthase B n=68 Tax=Bacilli RepID=TRUB_STAHJ Length = 305 Score = 313 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 93/311 (29%), Positives = 158/311 (50%), Gaps = 22/311 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L + K +G++S+D + K+++I + GHTG LDP +G+LP+C+G AT+ S Y++D Sbjct: 3 NGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVSGVLPVCIGTATRVSDYVMD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG+ T T D G+++++ V + ++ A L F G IEQ+P MYS+ Sbjct: 63 MGKSYNATITLGESTTTEDQTGEVIDKIDVQANAININEVDAVLKQFEGIIEQVPPMYSS 122 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELL-----FIRHEGNELELEIHCSKGTYIRTI 183 +K GKKLYEYAR+G V R R + + + +E+ C KGTYIRT+ Sbjct: 123 VKVNGKKLYEYARKGETVERPIRKVNIDSIARTSELQFEDGKCHFNIEVKCGKGTYIRTL 182 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D+G++LG AH+ L R+ + ++ +TL+ + +L EQ + L P L P Sbjct: 183 ATDIGKQLGYPAHMSLLTRINSGGFDIKDSITLDQISQLHEQ---------DTLQPHLFP 233 Query: 244 MDSPASDYPVVNLPLTSSV-YFKNGNPVRTSGAP--LEGLVRVTEGENGKFIGMG--EID 298 ++ P + + + NG +E + + E K + + + Sbjct: 234 LEYGLKSLPKIYVSDENIKTRILNGQKFNKKQFNQTIEQQLVFIDSETEKVMAIYIQHPE 293 Query: 299 DEGRVAPRRLV 309 + P+++ Sbjct: 294 KNHEIKPKKVF 304 >UniRef50_UPI00016C0EBC tRNA pseudouridine synthase B n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0EBC Length = 290 Score = 313 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 109/303 (35%), Positives = 166/303 (54%), Gaps = 16/303 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ + K +G +S+D + K + I + GHTG LDP ATG+LPIC+GEATK YL Sbjct: 1 MDGIINIYKEKGFTSHDVVAKARGILRQKKIGHTGTLDPDATGVLPICIGEATKIVPYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D++K Y LG T T DA G++VEE V S EQ+ L TF G EQ P MYSA+K Sbjct: 61 DANKTYEAEVILGAYTTTEDASGEVVEEFSVEVSNEQVLDVLATFVGAYEQTPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIR-HEGNELELEIHCSKGTYIRTIIDDLGE 189 G++LYE ARQ I + R +R + + EL + + ++ + CSKGTY+RT+ D+G Sbjct: 121 INGQRLYELARQNIVIDRPSRMVEILELEQMSPLKDGRFKIRVVCSKGTYVRTLCTDIGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL CGAH+ L R V ++ +E+ VTL+ L +L + +L+ ++ Sbjct: 181 KLKCGAHMGELTRTRVGEFDIEQSVTLKQLEKLNA-------------EEILISIEKMFE 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 YP V + + + + NGNP+ A RV + FIG+ + E + ++ Sbjct: 228 QYPAVVVDQSYNKFLYNGNPLEVKIAAAGLFFRVYD-YMNHFIGLYKWSGEKLIV-EKMF 285 Query: 310 VEY 312 + Sbjct: 286 YKE 288 >UniRef50_Q1MZS4 TRNA pseudouridine synthase B n=1 Tax=Bermanella marisrubri RepID=Q1MZS4_9GAMM Length = 327 Score = 313 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 139/320 (43%), Positives = 203/320 (63%), Gaps = 17/320 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R RR+GRDI+G++++DKP GM+SN LQ+VKR+Y A +AGHTGALDP+ATG+LPICLG Sbjct: 1 MGR-RRKGRDISGIIVIDKPSGMTSNGVLQQVKRLYGAAKAGHTGALDPIATGVLPICLG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFSQ LL+SDKRY +LG+ DT+D +G+I++ V + +++ +AL FRG+I Sbjct: 60 EATKFSQRLLESDKRYITKVQLGESRDTADIEGEILDRADVPDLTQDKIESALTQFRGEI 119 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPR--EARPITVYELLFIRHEGNELELEIHCSKG 177 Q+P MYSALK+QGKKLYE AR G + +AR +++ +L + + LEL++ C+KG Sbjct: 120 TQVPPMYSALKHQGKKLYELARAGEDFDIQSKARQVSILKLELLDFGDDWLELDVTCTKG 179 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIR++ +D+ + LG V LRRL Y + M LE L E+ +++E L Sbjct: 180 TYIRSLAEDVAKALGTLGFVAVLRRLGAGPYHADMMHELEQLVEIKDKSE-----DFSNL 234 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS------GAPLEGLV--RVTEGENG 289 D LLMP + D P+V L L + + G + + G P V R+ + Sbjct: 235 DQLLMPTQTALPDVPLVELTLKQAHDLQFGRAIELNSQQFKAGEPAIAQVQLRLRYAQWD 294 Query: 290 KFIGMGEIDDEGRVAPRRLV 309 +G+GE+ +G +AP+RL+ Sbjct: 295 LLLGIGELSAQGVIAPKRLL 314 >UniRef50_Q18BH7 tRNA pseudouridine synthase B n=8 Tax=Clostridiaceae RepID=TRUB_CLOD6 Length = 301 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 106/312 (33%), Positives = 173/312 (55%), Gaps = 23/312 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N ++ + KP GM+S+D + +V++I N + GHTG LDP A+G+LPIC+G+ATK + +L Sbjct: 1 MNKIISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVIL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + DK Y LG TDT DA G+I+++ FS E + A DT RG+I Q+P +YSAL Sbjct: 61 NKDKSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSAL 120 Query: 130 KYQGKKLYEYARQGI--EVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 K GK++ + R G E+ + R + + ++ + +GN++ + CSKGTY+R+I D+ Sbjct: 121 KVNGKRMCDLVRSGRQSEITLKTRRVNIKDIKILSIKGNKVMFYVECSKGTYVRSICHDI 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 GE LGCGAH+ +L R + K+ ++ +TLE L E + LD L +D Sbjct: 181 GEYLGCGAHMSFLNRTSSGKFDLDNSITLEELELFYEN---------KTLDKYLYDIDYV 231 Query: 248 ASDYPVVNLPLTSSVYFKNG------NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 + V L + Y+ NG ++ + + VRV +N F+G+G++ Sbjct: 232 LDSFNYVVLNPNAIKYYSNGGSIDDKRFLKNNFDKDDEFVRVYSTDN--FLGLGKLSKHN 289 Query: 302 ---RVAPRRLVV 310 V ++ + Sbjct: 290 NTISVKSDKMFI 301 >UniRef50_C0WBC5 tRNA pseudouridine synthase B n=1 Tax=Acidaminococcus sp. D21 RepID=C0WBC5_9FIRM Length = 288 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 96/300 (32%), Positives = 153/300 (51%), Gaps = 17/300 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ + KP GM+S+D + +++I + GH G LDP+A G+LP+ G+AT+F +Y Sbjct: 1 MDGIFNVLKPPGMTSHDVVGAMRKILQMKKIGHAGTLDPMAAGVLPVFTGQATRFLEYAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR G RTDT D +G+++ E PV +L L +F G+ Q+P MYSA+ Sbjct: 61 HDRKTYRAELTFGFRTDTGDLEGKVLAESPVRDLDLAELKETLQSFVGEGMQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 GKKLY+ ARQGI V RE RPIT+++L + + L E+ CSKGT+IRT+ +D+ + Sbjct: 121 SVGGKKLYKLARQGIVVEREPRPITIHDLSLLTYRKKTLLFEVTCSKGTFIRTLCEDIAK 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL + +L R V + +E TLE +++ + +D Sbjct: 181 KLAMEGTMSFLLRTKVGDFTLENAHTLEEIQQDPYGTA--------------LSLDVVLR 226 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 +P + + G G L V E + IG+ +GR+ P +++ Sbjct: 227 HFPHREVNDIQARRIAQGVATTVRGIEEGQLY-VIERNGHEVIGLARA-KQGRLCPHKII 284 >UniRef50_A9IMS8 tRNA pseudouridine synthase B n=3 Tax=Bartonella RepID=TRUB_BART1 Length = 320 Score = 311 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 103/321 (32%), Positives = 164/321 (51%), Gaps = 15/321 (4%) Query: 1 MSRPRRR-GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R R++ GR ++G ++ DKP+GM S +A+ K+K +++A +AGH G LDPLA+G+LPI L Sbjct: 1 MARQRKKKGRPVSGWVVFDKPKGMKSTEAVSKIKWLFHAQKAGHAGTLDPLASGLLPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 GEATK Y++ K YR GQ T D +G+I + + E++ A L + G I Sbjct: 61 GEATKTVPYVMQGKKTYRFHIAWGQERSTDDLEGEITKTSLKRPTQEEILALLPQYTGII 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR-HEGNELELEIHCSKGT 178 Q P +SA+K G + Y+ AR+G + R + + + EI C KGT Sbjct: 121 LQTPPQFSAIKIAGNRAYDLAREGEVIEIPPREVEIETFKLVETPTKEHSVFEITCGKGT 180 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELV-------EQAEQQDI 231 Y+R++ D+G LGC H+ LRR+AV+ + E +VT + L+ + ++ E Sbjct: 181 YVRSLARDMGRDLGCYGHIADLRRIAVAPFCEEDLVTWDELKAAISPNKNTTDENENSFE 240 Query: 232 PAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPL---EGLVRVTEGEN 288 LD LL+ + P L T + G+ + S E V V E Sbjct: 241 KDFLTLDELLIETGAALDCLPHYPLTDTQAQRVMRGHSIPLSAQKTLLDEEEVCVLYKE- 299 Query: 289 GKFIGMGEIDDEGRVAPRRLV 309 + + +G + D+G P+R+ Sbjct: 300 -QLLAIGTL-DKGLFKPKRIF 318 >UniRef50_B0PH12 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0PH12_9FIRM Length = 300 Score = 311 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 158/305 (51%), Gaps = 16/305 (5%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L +DKP+G +S D + K++ I R GH G LDP+ATG+LP+ G ATK L Sbjct: 6 GILCIDKPEGFTSFDVVAKLRGIARERRVGHAGTLDPMATGVLPLFFGRATKACDILPRQ 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 DKRY +LG TDT D G ++ E+ ++ AA GDI Q P MYSA++ Sbjct: 66 DKRYLASFKLGVTTDTQDITGTVLSEQTPDADEARVRAAAAGLVGDIMQTPPMYSAVRVN 125 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLGEK 190 G++LYE AR+G+EV R ARP+TVY + F + N +++HCSKGTYIRT+I D+G Sbjct: 126 GQRLYELARRGVEVERAARPVTVYSIDFTACDVQANTFTIDVHCSKGTYIRTLIADIGAA 185 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + LRR + + + VT+E ++ + + LL P+++ Sbjct: 186 LGCGAVMTALRRTMAASFTLADCVTIEQAQQAAQDG---------VFGTLLRPVETAFCA 236 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGA---PLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P L + F NG + V + +F+G+ + +G + ++ Sbjct: 237 LPSAALNEKQTKMFLNGVRLDIGRVACKRTGDTYAVY-AHDRRFLGVAR-ERDGLLCMQK 294 Query: 308 LVVEY 312 L Sbjct: 295 LFTLE 299 >UniRef50_A5CXX8 tRNA pseudouridine synthase B n=3 Tax=Bacteria RepID=A5CXX8_VESOH Length = 302 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 135/312 (43%), Positives = 198/312 (63%), Gaps = 12/312 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R +GR ING++LLDK G+SSN ALQKVKR++ A +AGHTGALD A+G+LPICLG Sbjct: 1 MLRRNPKGRSINGIVLLDKDIGLSSNAALQKVKRLFFAKKAGHTGALDFSASGILPICLG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDI 119 +ATK +Q+LL+ DKRY V +LGQ +DT D +G I++ +P S ++A +F+G+I Sbjct: 61 QATKIAQFLLEDDKRYFVRGKLGQISDTGDCEGSIIKTQPFEHLSDSEIAKVTASFKGNI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 QIP MYSALK G+ LY+ AR+GIEV RE+R +T+Y+++++ ++ L LE+ CSKGTY Sbjct: 121 FQIPPMYSALKRDGQPLYKLARKGIEVERESRLVTIYKIIYLGYKNGILSLEVTCSKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IRT+I+D+GEKL CGAHVI LRR + + + +T L L + LD Sbjct: 181 IRTLIEDIGEKLSCGAHVIELRRTGFAHIDIRQTLTFSELEILASN-------DYQALDE 233 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV-TEGENGKFIGMGEID 298 ++ + V L S+ K G ++T +GL++V E +F+G+G+ Sbjct: 234 KILASEDMLLGLEDVYLSKVQSLDIKFGREIQTD---KQGLLKVKLFNEKKQFLGIGQCQ 290 Query: 299 DEGRVAPRRLVV 310 G + P++L + Sbjct: 291 GNGIILPKKLFI 302 >UniRef50_Q3A4A3 tRNA pseudouridine synthase B n=2 Tax=Desulfuromonadales RepID=TRUB_PELCD Length = 306 Score = 310 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 108/301 (35%), Positives = 163/301 (54%), Gaps = 19/301 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L++DKPQGM+S+ + +++R++ + GH G LDPLATG+L + LG+AT+ Q+L+ Sbjct: 1 MNGILIVDKPQGMTSHAVVGRIRRLFGLRKVGHAGTLDPLATGVLVVALGQATRILQFLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +K YR LG+ TDT D++GQIV A+ +A + G +Q+P MYSAL Sbjct: 61 QENKVYRASLVLGKTTDTQDSEGQIVATSDPGHIDAQSVADVCHSMVGSYDQMPPMYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G LY+ ARQG+EV R+ R IT+++L + E + ++HCSKGTY+RTI D+G Sbjct: 121 KKDGVPLYKLARQGVEVSRKPRRITIFDLQLLAVEPPNITFDVHCSKGTYVRTICHDIGV 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCGAH+ LRRL + + V+ VTLE + + + + LL+ + Sbjct: 181 KLGCGAHLTALRRLRSAPFDVKEAVTLEAIELMAPEDRPE----------LLLSIAEALR 230 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGK---FIGMGEIDDEGRVAPR 306 +YP +N+ G P + E G +G G P Sbjct: 231 EYPSLNVCPEGIKRLGYGIPPTADMIADT-----IDFEEGTQVLLVGPGGALAMATYVPS 285 Query: 307 R 307 R Sbjct: 286 R 286 >UniRef50_B9YSP0 tRNA pseudouridine synthase B n=3 Tax=Nostocaceae RepID=B9YSP0_ANAAZ Length = 309 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 105/303 (34%), Positives = 154/303 (50%), Gaps = 20/303 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L+KP G +S+D + +V+++ R GH G LDP ATG+L I LG+AT+ QYL Sbjct: 19 VQGFLNLNKPYGWTSHDCVARVRKLLRLKRVGHAGTLDPAATGILLIALGKATRLLQYLP 78 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y+ RLG RT T D +G+++ +P S + AL F G IEQIP YSA+ Sbjct: 79 GE-KAYQATVRLGVRTTTDDLEGEVITSQPCAGLSLADIKTALSQFIGKIEQIPPSYSAI 137 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDD 186 + G++LY+ AR+G V R + V + + + EL+L + CS GTYIR I D Sbjct: 138 QVDGQRLYDLARKGEMVLAPTRTVEVLNIEVLDWRDGDFPELDLALACSAGTYIRAIARD 197 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG L G + L R S + ++ VTL L ++ Q +P D+ Sbjct: 198 LGIVLNTGGTLAALIRTESSSFCLQDSVTLTDLETQLQTGTFQP-----------IPADA 246 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 P VN+ T + + G V L GLVRV E +F+G+ +I D + P+ Sbjct: 247 ALQTLPSVNISGTFAKKWCQGQQVPLD-IDLLGLVRVY--EEARFLGIAQIQDH-ILIPQ 302 Query: 307 RLV 309 + Sbjct: 303 MVF 305 >UniRef50_Q98BI6 tRNA pseudouridine synthase B n=2 Tax=Mesorhizobium RepID=TRUB_RHILO Length = 325 Score = 309 bits (792), Expect = 9e-83, Method: Composition-based stats. Identities = 107/325 (32%), Positives = 163/325 (50%), Gaps = 16/325 (4%) Query: 1 MSRP-RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M R +++GR ++G ++LDKP GM S +A+ K+K ++ A +AGH G LDPLA+GMLPI L Sbjct: 1 MGRRGKKKGRPVSGWVVLDKPVGMGSTEAVSKIKWLFQAEKAGHAGTLDPLASGMLPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 GEATK Y+ D K YR GQ T D +G + + + + ++ A L + G I Sbjct: 61 GEATKTVPYVQDGAKIYRFTVAWGQERSTDDLEGPVTKSSDLRPAEAEVKALLPKYTGVI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q P +SA+K G++ Y+ AR+G V AR I + L I H + E+ C KGTY Sbjct: 121 MQTPPQFSAIKIAGERAYDLAREGETVDIPAREIEIGRLDIIEHHADHTVFEVECGKGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE---- 235 +R++ D+G LGC H+ LRR+ V + E VT+ L A+ +D P Sbjct: 181 VRSLARDMGRDLGCFGHISDLRRVEVEPFTSEDFVTIAELEAARFGAQGEDKPEPADDAD 240 Query: 236 ---------LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTE 285 +D LL+ + P + + ++ + GNPV G Sbjct: 241 AIDVPVDFGAIDALLVDTSAALDCLPQIAISDDAATKIRLGNPVIIRGRDAPVEAEEACA 300 Query: 286 GENGKFIGMGEIDDEGRVAPRRLVV 310 GK + +G I ++G P+R+ Sbjct: 301 TARGKLVAIGAI-EQGMFKPKRVFA 324 >UniRef50_C4GBF3 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GBF3_9FIRM Length = 315 Score = 309 bits (792), Expect = 9e-83, Method: Composition-based stats. Identities = 110/324 (33%), Positives = 170/324 (52%), Gaps = 36/324 (11%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L + K G +S D + K++ I + + GHTG LDP A G+LP+C+G ATK + + Sbjct: 3 SGILNVYKEPGFTSFDVVAKLRGILHIRKIGHTGTLDPAARGVLPVCIGRATKAVNLMAN 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y +LG RTD+ D GQI+E PV+ S +++ + +F G +QIP MYSA K Sbjct: 63 WTKTYIADMQLGIRTDSQDMTGQILERNPVSVSEDEIQREVASFFGPQDQIPPMYSARKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GK+LY YARQGIE+ R A I +Y++ + E + +E+ CSKGTYIRT+ D+G+ L Sbjct: 123 GGKRLYHYARQGIELERRASHIVIYDIQILSMELPHVIMEVTCSKGTYIRTLCSDIGDAL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GCGA + L R+ V + + + L+ ++E L+ +L P+D+ +D Sbjct: 183 GCGASMAALERIRVGDFDSKNALRLDQIQEAAAAGR---------LEDILYPVDAVFADL 233 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE-----------------------N 288 P + LP + KNG P+ EG+ + EGE + Sbjct: 234 PALKLPEGLTKAGKNGAPI---AEKTEGITCLYEGEKQSRTGSDWRKAGLGLAFRVYLSD 290 Query: 289 GKFIGMGEIDDEGRVAPRRLVVEY 312 G F+G+ +EG + + E Sbjct: 291 GVFLGIYVRCEEG-LRLKNFFYEE 313 >UniRef50_B0NZN2 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0NZN2_9CLOT Length = 299 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 150/306 (49%), Gaps = 16/306 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+L + K + +S+D + K++ I + GHTG LDP A G+LP+CLG+ TK L Sbjct: 3 NGLLNIYKEKDFTSHDVVAKLRGILRQKKIGHTGTLDPNAEGVLPVCLGKGTKLCDMLTG 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K+Y+V + TDT D G + + + + +F G+ +Q+P MYSA K Sbjct: 63 TKKQYKVSFVFEKETDTEDIWGTVTKTHEPLKQDAPIKDTILSFVGEYDQVPPMYSAKKI 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GKKLYE AR+G + R+ I +Y++ I E+ + + CSKGTYIR++ D+G KL Sbjct: 123 NGKKLYELAREGKIIERKPERIRIYDISDIEISYPEVTMTVTCSKGTYIRSLCRDIGHKL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GA + L R S + +E TL + E V+ + ++ ++P++ Y Sbjct: 183 QNGACMTKLVRTRSSGFQLEYAHTLSEIEEAVKTGK---------IEEWIIPIEKVFLKY 233 Query: 252 PVVNLPLTSSVYFKNGNPVRTS-----GAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 + NGNP++ +RV + E+ +FIG+ P Sbjct: 234 QKGTVKKDYDKVLFNGNPLKKEMFYEIDLDTTKKLRVYD-ESEQFIGIYYWKKN-MFFPD 291 Query: 307 RLVVEY 312 ++ + Sbjct: 292 KIFYDN 297 >UniRef50_A7NAR1 tRNA pseudouridine synthase B n=19 Tax=Francisella RepID=TRUB_FRATF Length = 302 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 116/307 (37%), Positives = 179/307 (58%), Gaps = 16/307 (5%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 ++ ++NGV++++K + +SSN LQ++K ++NA +AGHTG LDP+ATG+LPIC G ATK Sbjct: 2 KKNRLNLNGVVVINKAKDISSNKVLQQLKYLFNAQKAGHTGTLDPMATGVLPICFGRATK 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQI 122 +QYLLD+DK Y RLG TD+ DA+G+I+ + SAE L L F GD+ QI Sbjct: 62 IAQYLLDADKEYIATIRLGIETDSGDAEGEIIAKSINIPELSAEYLEIVLAKFSGDVVQI 121 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P MYSALKY G+ LY+ AR+G V ++R I +YEL + + L++ + CSKGTYIR+ Sbjct: 122 PPMYSALKYNGQPLYKLAREGKTVEVKSRNIKIYELELLEFNIDSLKIRVKCSKGTYIRS 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+G+ LGCG H+I L+R + + LE L++L + + I Sbjct: 182 LAIDIGKTLGCGGHLIALQRTQSGPFKLSEAFRLEQLKDLSFEQKIASITN--------- 232 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 ++S D P+ +L + L+G VR+ + E KF+ + E D+G+ Sbjct: 233 -IESVFIDKPIYSLLEEEKNDLYK-RGLFADKPHLDGTVRIYDVE--KFVAIAEF-DKGK 287 Query: 303 VAPRRLV 309 + ++ Sbjct: 288 LINKKFF 294 >UniRef50_Q89AF6 tRNA pseudouridine synthase B n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=TRUB_BUCBP Length = 302 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 149/304 (49%), Positives = 208/304 (68%), Gaps = 9/304 (2%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 R I+G++L+DKP G+SS++ LQKVK I + GHTG LDPLATGMLP+C G ATKFSQ+ Sbjct: 6 RSIDGIILIDKPYGLSSHETLQKVKGILKIKKMGHTGTLDPLATGMLPMCCGRATKFSQF 65 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 L++ KRYRVIA+LGQ+T TSD++GQI+ RP+TF+ QL L +F G I+QIPSMYSA Sbjct: 66 LMNFKKRYRVIAKLGQKTSTSDSEGQIIHVRPITFTNLQLQKVLKSFHGKIKQIPSMYSA 125 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFI--RHEGNELELEIHCSKGTYIRTIIDD 186 +KY G LY+YARQGI + R+ R +YEL + ++ LEL+I CSKGTYIRT+I+D Sbjct: 126 IKYHGHALYKYARQGIVISRKVRDAIIYELKVLGYSYKHKYLELDIICSKGTYIRTLIED 185 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +GEKL CGAHVI LRRL V Y +M+ ++ L +LV+ +L+ +L+ +D+ Sbjct: 186 VGEKLNCGAHVISLRRLQVGNYTSFQMIDIKTLNKLVK-------YNINVLEHILLSVDN 238 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 S +P VN+ +NG V+T + VR+TEG N +FIG+G+I++ + Sbjct: 239 AISCFPEVNIVPNVIKNLQNGQKVKTHSGFINQFVRITEGINRRFIGIGKINNINELYSY 298 Query: 307 RLVV 310 RL++ Sbjct: 299 RLII 302 >UniRef50_C6MD69 tRNA pseudouridine synthase B n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MD69_9PROT Length = 319 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 125/315 (39%), Positives = 180/315 (57%), Gaps = 19/315 (6%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 + R +I+GVLLLDKP G+SSN ALQ K+++ A + GHTG LDP+ATG+L IC GEATK Sbjct: 3 KSRKLNISGVLLLDKPYGVSSNKALQTAKQLFLAAKCGHTGTLDPMATGLLAICFGEATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQI--VEERPVTFSAEQLAAALDTFRGDIEQI 122 FS LL ++K Y +LG + T DA+G I V + + AL F G I+Q+ Sbjct: 63 FSSVLLGANKTYEATLKLGFMSTTGDAEGIISPVAATVQNPTLGECQQALSQFIGKIKQM 122 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 P M+SALK+ GK LY YAR+G + R+AR ITVY++ NEL+L I C GTYIR Sbjct: 123 PPMFSALKHHGKPLYCYARKGEIIERQAREITVYDIQIQSLHCNELQLSIQCGTGTYIRV 182 Query: 183 IIDDLGEKLGC-GAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 + +D+G+ LGC GA++ LRR A+ ++ + + TL L + D L Sbjct: 183 LAEDIGKALGCGGAYLTGLRRTAIDRFNLSQAYTLSALENMSASER----------DNSL 232 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS-----GAPLEGLVRVTEGENGKFIGMGE 296 +P+D DYP + L S+++ + G + VR+ E +F+G+GE Sbjct: 233 LPVDHLLQDYPSITLDRLSALHIQQGRNILCPPGRHGMIKNGKQVRLYT-EKNQFLGLGE 291 Query: 297 IDDEGRVAPRRLVVE 311 I E +A +RL+ + Sbjct: 292 ITIEQTIAVKRLLSD 306 >UniRef50_Q5X1C5 tRNA pseudouridine synthase B n=4 Tax=Legionella pneumophila RepID=TRUB_LEGPA Length = 303 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 125/301 (41%), Positives = 182/301 (60%), Gaps = 11/301 (3%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 I+G+LLL+KPQGM+SN ALQK K ++ A +AGHTG+LDPLATGMLP+C GEATK QYL Sbjct: 9 SIDGILLLNKPQGMTSNAALQKAKHLFGAKKAGHTGSLDPLATGMLPLCFGEATKICQYL 68 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 L++DK Y I RLG +T+T+D G+++ T S E++ A L+ ++G I+QIPSM+SA Sbjct: 69 LNADKSYETIGRLGSKTNTADCTGEVIFCIENYTVSHEEMIATLEKYKGKIKQIPSMFSA 128 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK++G LY AR+GIE+ R+AR I + +L + +G L + CSKGTYIR +++D+G Sbjct: 129 LKHKGTPLYRLAREGIEIERKARDIVISQLKLEQFDGECFTLTVSCSKGTYIRNLVEDIG 188 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 + L GAH+ L RL + + RM TL+ L+++ L+P+D Sbjct: 189 DTLKAGAHMTKLHRLYTAGFENNRMYTLDELQDMPLSQRL----------ACLIPIDQAI 238 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 V L + + G + +EG GE +FIG+G+ G + +RL Sbjct: 239 QHLTPVILSDSEVTAIRQGKVISNKTGAVEGEDLRLYGEQSQFIGIGQALIHGDIKAKRL 298 Query: 309 V 309 V Sbjct: 299 V 299 >UniRef50_B1YI60 tRNA pseudouridine synthase B n=2 Tax=Exiguobacterium RepID=B1YI60_EXIS2 Length = 302 Score = 306 bits (784), Expect = 8e-82, Method: Composition-based stats. Identities = 107/296 (36%), Positives = 152/296 (51%), Gaps = 19/296 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GVL LDKP GM+S+D + +++R++ + GHTG LDP TG+LPICLG ATK ++++ D Sbjct: 5 GVLPLDKPAGMTSHDCVFRLRRLFQTKKVGHTGTLDPEVTGVLPICLGRATKLARFITDE 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTF---SAEQLAAALDTFRGDIEQIPSMYSAL 129 KRY +G T T DA G+ V E PVT + +Q+ L G IEQ P YSA+ Sbjct: 65 GKRYVAEVTIGYATTTEDAHGETVRETPVTPASITEQQVDEILQQLTGQIEQTPPYYSAV 124 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR-----HEGNELELEIHCSKGTYIRTII 184 K GKKLYEYAR+GIEV R R + + L ++EI C KGTYIRT+ Sbjct: 125 KVNGKKLYEYARKGIEVERPTRTVQIDTLERTSGLTFADGLCRFQIEIACGKGTYIRTLA 184 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 ++GE+LG AH+ LRR + VTL L E ++P+ Sbjct: 185 VEIGEQLGYAAHMSELRRTSSGMMSETEAVTLATLEA---------CETVEERMQYVLPI 235 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 + +P + + ++ NG + G P+E E G + + +D E Sbjct: 236 EQVIQKWPRLTVNAETAARVLNGAKL--PGIPVEFERFTVYNEEGIPLAIYRLDSE 289 >UniRef50_A5VJE2 tRNA pseudouridine synthase B n=18 Tax=Lactobacillus RepID=TRUB_LACRD Length = 301 Score = 305 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 96/309 (31%), Positives = 156/309 (50%), Gaps = 19/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ L K +GM+S + ++++I + GH+G LDP G+LPIC+G ATK YL+ Sbjct: 1 MDGIIPLYKERGMTSFACVSRLRQILKTKKIGHSGTLDPGVAGVLPICVGNATKVVDYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 S K+Y+ +G T T D DG +EE+ V ++ +A+++ G I QIP MYSA Sbjct: 61 QSGKQYQGELLIGFATTTQDLDGDKIEEKVVADEIPTSEILSAMNSLTGTIIQIPPMYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIR------HEGNELELEIHCSKGTYIRT 182 +K GKKLYEYAR G V R R +T+ + + ++ + + CSKGTYIRT Sbjct: 121 VKVNGKKLYEYARAGETVERPKRQVTISKFELLSSKYDKKNKQQRIRFNVECSKGTYIRT 180 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 ++ DL KLG + L RL + +++ ++L+ +R+ V A + L L Sbjct: 181 LVVDLARKLGYPGVMSLLTRLKSGGFTLDQTLSLDDVRDAV---------ATQTLQQYLY 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID-DEG 301 P+D DYP + + + +NG + S V +G+ + D Sbjct: 232 PLDYALKDYPQLTIQVAQWKKVQNGGWLSPSELNTSEKEIVLSF-DGQVKALYHFDPKNK 290 Query: 302 RVAPRRLVV 310 P ++ Sbjct: 291 MYKPTKMFA 299 >UniRef50_A1AMM4 tRNA pseudouridine synthase B n=2 Tax=Desulfuromonadales RepID=A1AMM4_PELPD Length = 304 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 102/312 (32%), Positives = 157/312 (50%), Gaps = 20/312 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+G ++DKP G+SS+D + +V+RI R GHTG LDP ATG+LP+ + +ATK +L Sbjct: 2 ISGFFVIDKPAGISSHDVVSRVRRILGTRRVGHTGTLDPFATGVLPVAVNDATKVIPFLD 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y+ + RLG TDT D G+I+ E + S E+ L F G I Q+P M+SA+ Sbjct: 62 EGVKCYQALLRLGVVTDTLDMTGRILAEGDYSSVSRERFLELLTRFCGVISQVPPMFSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G+ LY+ ARQGIEV R AR + ++ L + E L + CS+GTY+R++ DDLG Sbjct: 122 KRDGQPLYKLARQGIEVERRARQVEIHSLELLSFEPPLACLRVSCSRGTYVRSLADDLGA 181 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LGCGA + LRR+A + + +TL L + E D L + + + Sbjct: 182 ELGCGASLQELRRIASGPFHLSSAITLATLEQAKEGGMS---------DALCLDPYAALA 232 Query: 250 DYPVVNLPLTSSVYFKNGN------PVRTSGAPLEGLVRVTEGENGKFIGMGEID----D 299 P + L ++G + ++ NG + I+ Sbjct: 233 HLPDIPLSDAGLAKVRHGRSPEWGETLLSAPCEGTEAGLARLSRNGSLAAVARIEPLPYG 292 Query: 300 EGRVAPRRLVVE 311 R+ +R+ Sbjct: 293 GSRLVLKRVFCN 304 >UniRef50_A7VT62 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A7VT62_9CLOT Length = 297 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 111/307 (36%), Positives = 174/307 (56%), Gaps = 18/307 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++++DKP +S D + ++ ++ + GHTG LDP+ATG+LPI +G ATK Sbjct: 1 MNGIIVIDKPPRFTSFDVVAVMRGLFGTKKVGHTGTLDPMATGVLPILIGSATKAQDLTP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DS K Y RLG TDT D+ G + E PVT + L +AL FRG+I Q+P MYSA++ Sbjct: 61 DSGKEYVAGFRLGVVTDTEDSTGTVKETFPVTADEKALESALSHFRGEILQVPPMYSAIQ 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLG 188 G +LY+ AR+GIEV REARP+T++EL + + E E + + CSKGTY+RT+ DLG Sbjct: 121 KNGVRLYDLARKGIEVEREARPVTIHELELLEYRQETGEGSIRVRCSKGTYVRTLCADLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 ++LGCG + LRR A Y ++ + L+ + + A +L+ L P+DS Sbjct: 181 KRLGCGGIMTSLRRTAACGYTIKDSIPLDE---------AKSLKAEGVLEQRLRPVDSLF 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTS-----GAPLEGLVRVTEGENGKFIGMGEI-DDEGR 302 +Y + + + F+NG + +RV G +G F+G+G + ++ Sbjct: 232 LEYRPLKVTGPQAKRFQNGGALALERTGVKKEADGANIRVY-GPDGIFLGLGRVHREKNE 290 Query: 303 VAPRRLV 309 ++ +L Sbjct: 291 LSILKLF 297 >UniRef50_Q2RJM2 tRNA pseudouridine synthase B n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=TRUB_MOOTA Length = 305 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 101/312 (32%), Positives = 165/312 (52%), Gaps = 26/312 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G + + KP G++S+D +Q ++R+ R GH G LDPLA G+LP+ +G AT+ +YL Sbjct: 4 GFVNVLKPPGLTSHDVVQNLRRLLKVKRIGHGGTLDPLAAGVLPVAVGTATRLLEYLQGG 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK YR LG +TDT D G+++ +P + + L AA F G I Q+P M SA+ Y Sbjct: 64 DKAYRAEFILGLKTDTQDLGGRVLARKPCPPFTEKDLQAATRPFTGTIRQVPPMVSAVHY 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGN----ELELEIHCSKGTYIRTIIDDL 187 QG++LYE AR+G+EV R AR +T++E IR + ++I CS+GTYIRT+ D Sbjct: 124 QGRRLYELAREGLEVERPARQVTIHEFRLIRAWPDGPYYRALIDITCSRGTYIRTLGADW 183 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+ LG GA + +L R + + TLE + +++ E L+P + Sbjct: 184 GDYLGVGATLAFLLRTRAGSFRLTDAWTLEEIAGAIDRGE----------RTFLLPPAAG 233 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVR------TSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 + PV+ +P + NG ++ +VR+ GE G+ + + ++ + Sbjct: 234 LAHLPVIIVPGEFIRHVSNGVAIKGDVCRPLPSLREGDIVRLETGE-GQLLALARVEPDT 292 Query: 302 R----VAPRRLV 309 R + P +++ Sbjct: 293 RGSFLLKPHKVL 304 >UniRef50_C7H6A8 tRNA pseudouridine synthase B n=2 Tax=Faecalibacterium prausnitzii RepID=C7H6A8_9FIRM Length = 295 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 106/303 (34%), Positives = 162/303 (53%), Gaps = 11/303 (3%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G+L++DKP +S D + K++ I + GH+G LDP+ATG+LP+ G A+K L Sbjct: 2 MQGILIVDKPTDWTSFDVIAKLRGILGTRKLGHSGTLDPMATGVLPVFCGGASKAVDLQL 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D K YR + RLGQRTDT D G ++E PVT ++L A L F G Q P MYSA+K Sbjct: 62 DHTKAYRAVLRLGQRTDTGDVTGTVLETTPVTAGEQELLAVLPQFLGPRMQTPPMYSAVK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFI-RHEGNELELEIHCSKGTYIRTIIDDLGE 189 G+ LY+ AR+G V R+ARPI + ++ + NE L + CSKGTYIR +++++ E Sbjct: 122 INGQPLYKLAREGKTVERKARPIEILDIRYEGSPAENEYALTVKCSKGTYIRVLLEEIAE 181 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +G + LRR+A Y TLE ++ + E L L++P++S + Sbjct: 182 AMGQKGTMSALRRVAAGVYSEADAHTLEEIQAAKDAG-------PEALQALMLPVESVFA 234 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P++ + NG P + +G RV G+F+G+ + G + +L Sbjct: 235 SLPLLVADERVEQHLYNGCP-TSRYPAADGRYRVRNA-GGQFLGLANVV-NGVLKVEKLF 291 Query: 310 VEY 312 VE Sbjct: 292 VER 294 >UniRef50_A8ZZ61 tRNA pseudouridine synthase B n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZZ61_DESOH Length = 303 Score = 304 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 97/300 (32%), Positives = 149/300 (49%), Gaps = 19/300 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+++++KP G++S + VKR A + GH G LDP ATG+L + AT+ +++ L Sbjct: 6 DGIIVVNKPAGITSAKVVALVKRHTGARKVGHAGTLDPFATGVLVCLINRATRLAEFFLA 65 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV---TFSAEQLAAALDTFRGDIEQIPSMYSA 128 SDK Y + LG TDT D G + T S + + + +F G+ EQ P +SA Sbjct: 66 SDKTYAAVMCLGVETDTQDRTGTVTAVCDTSLQTVSDDAIRRVMTSFEGEGEQRPPAFSA 125 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K+QG LY ARQG+ V + ARP+ + L + E+ CS GTYIRT+ D+G Sbjct: 126 VKHQGVPLYRLARQGVYVEKPARPVVISSLTVQEICWPMVRFEVTCSSGTYIRTLCADMG 185 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCG H+ L R + + R V LEHL +L + + D LL+PM Sbjct: 186 RALGCGGHLYALERTRAGGFDLARAVDLEHLADLCKAGKATD---------LLVPMSEAL 236 Query: 249 SDYPVVNLPLTSSVYFKNGNPVR------TSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 S P P + + G + A EG +VT+ +G+ + + + +E Sbjct: 237 SGMPRFTAPPSLAGRIAAGGQLTAADFAGFPAADAEGYFQVTDA-DGRLLAVVQRHEETY 295 >UniRef50_Q057K1 TRNA pseudouridine 55 synthetase n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057K1_BUCCC Length = 311 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 125/307 (40%), Positives = 196/307 (63%), Gaps = 2/307 (0%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKF 65 + ++ NG+LLLDKP+G+SSN LQ++K+I+ A +AG+TG+LDP+ATGMLPI G ATKF Sbjct: 4 QNNKNYNGILLLDKPKGISSNGILQQIKKIFLAKKAGYTGSLDPMATGMLPILFGNATKF 63 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 S+YL DS K+Y VIA+LG+ T T D G+ ++ + + + + L++F G+I Q+P M Sbjct: 64 SKYLTDSAKKYHVIAKLGETTSTGDLSGKKLKIKSININTNDIYKILNSFIGEIYQVPPM 123 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA+KY G LY+YAR GI VPR+ R + +Y++ FI+ LE + CSKGTYIR++++ Sbjct: 124 FSAIKYNGIPLYKYARLGILVPRKKRKLFIYKINFIQFVNPFLEFTVICSKGTYIRSLVN 183 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR--ELVEQAEQQDIPAAELLDPLLMP 243 D+G KL CG HVI+LRRL + Y ++VTL +L E + +L+ L+P Sbjct: 184 DIGNKLFCGGHVIFLRRLYIKPYNSSKLVTLSNLHFIENKNIEQIHKFYLFNMLNTFLLP 243 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 + S YP++ + + F+ + + GLV+V +N F+G+G+I+ G + Sbjct: 244 VSSFFFKYPIIKILHSDINNFQKKIKIALNFFSTIGLVQVITKKNNIFLGIGKINKFGIL 303 Query: 304 APRRLVV 310 P+ ++ Sbjct: 304 TPKCVLC 310 >UniRef50_A5EWY7 TRNA pseudouridine synthase B n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWY7_DICNV Length = 297 Score = 303 bits (776), Expect = 7e-81, Method: Composition-based stats. Identities = 115/303 (37%), Positives = 166/303 (54%), Gaps = 16/303 (5%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 RDING+LLL+KP+G+SSN ALQK + ++ A +AGH G LDP A+G+LP+ LGEATKFSQ Sbjct: 2 KRDINGILLLNKPRGISSNSALQKARALFQAKKAGHGGTLDPFASGLLPLFLGEATKFSQ 61 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMY 126 Y+L +DK+Y V R G+ T T D +G+ + P + L F+GD +Q P ++ Sbjct: 62 YMLGADKQYLVGIRFGRETTTDDCNGETLNTLPPPDLLNLDWQSVLAHFQGDYQQTPPIF 121 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SALK GK+ YE AR+GI R I + I + +L I CSKG+YIR D Sbjct: 122 SALKINGKRAYELAREGIIPEIAPRIIHIASCSVIAVNKDYAQLRIRCSKGSYIRAFARD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG L AH L R A + + + L L+ L D LL+P++ Sbjct: 182 LGRFLNSAAHAETLIREASGHFALNQAHDLSTLKTLSLSER----------DALLLPIEY 231 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 + P + +P + +GN + + GL ++ +G F+G+GE D GR+ P+ Sbjct: 232 ALKNIPPLAIPEDKIRFICHGNDIAITA--TNGLYQL--SADGHFLGIGEARD-GRLYPK 286 Query: 307 RLV 309 RL+ Sbjct: 287 RLL 289 >UniRef50_Q01SZ5 tRNA pseudouridine synthase B n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=TRUB_SOLUE Length = 293 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 106/302 (35%), Positives = 160/302 (52%), Gaps = 14/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+++DKP+G +S+D + KV+RI + GH G LDP+ATG+LP+ + AT+ +Q+ Sbjct: 1 MDGVIVIDKPEGWTSHDVVNKVRRIAKTKKVGHLGTLDPIATGVLPLVIERATRLAQFYT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 S+K Y + R G T + D G+ E+ V +AEQL AL+ FRG+ Q P SA Sbjct: 61 RSEKIYEGLVRFGWSTSSYDRAGEPTSEKVEVQLTAEQLEHALENFRGEFLQRPPAVSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K +GK+ YE AR+ + V E + VYEL + EGN L HCS GTY+R+I DLG+ Sbjct: 121 KVEGKRSYELARKNMAVELEPVKVHVYELTLLALEGNLARLRAHCSGGTYMRSIAHDLGQ 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LGCGAH+ LRRLA ++ +++ TLE L L + L ++P Sbjct: 181 ALGCGAHLQELRRLASGEFELDQARTLEQLESLAAEDR---------LPDAIVPAGKLLP 231 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGA---PLEGLVRVTEGENGKFIGMGEIDDEGRVAPR 306 +P V + ++ +NG S P V+ G + +GE+ P Sbjct: 232 AFPSVFVDEITAAQIRNGRDFPASPFRSQPASKYVKAVT-RTGDLVAIGEVVLPNLYHPT 290 Query: 307 RL 308 + Sbjct: 291 VV 292 >UniRef50_C9KKC7 tRNA pseudouridine synthase B n=3 Tax=Veillonellaceae RepID=C9KKC7_9FIRM Length = 298 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 152/310 (49%), Gaps = 22/310 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP GMSS+D + V+++ + R GH G LDP A G+LPI +G+A + +YL Sbjct: 2 MDGFLNILKPPGMSSHDVIGAVRKVLHMKRVGHAGTLDPAAAGVLPIAVGQAARLIEYLE 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQIPSMYSA 128 +DK YR G TD+ D G+I EE S + + AL F G I Q P +SA Sbjct: 62 LADKTYRAELTFGFATDSGDDTGEITEEVTDFTMPSQQAIEHALLGFTGKIRQTPPAHSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDD 186 +K GK+ + R+G EV +R +T++ L + + E ++ ++ CSKGTYIR++ D Sbjct: 122 IKIGGKRACDLLREGKEVEIPSREVTIHALDIVAYHPEEKKILFDVQCSKGTYIRSLCLD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G LG A + +L R V + + +TLE L E E A ++ Sbjct: 182 IGAALGLPATMSFLVRSRVGDFALADALTLEELAEAGESA--------------ILEPAH 227 Query: 247 PASDYPVVNLPLTSSVYFKNG-NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-GRVA 304 S +L F NG P ++RV G+F+G+G D V Sbjct: 228 FLSHLERYDLDPRREKPFCNGLGTGERRHVPETDILRVYSA--GRFLGIGRYDRRSQEVI 285 Query: 305 PRRLVVEYPA 314 P ++V PA Sbjct: 286 PAKVVCREPA 295 >UniRef50_B5YJI4 tRNA pseudouridine synthase B n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJI4_THEYD Length = 302 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 172/304 (56%), Gaps = 5/304 (1%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +N V++L+KP+G +S D + KVK+I +AGH G LDP+ATG+L +C+ EATK + +L+ Sbjct: 1 MNAVVVLNKPKGFTSQDTVTKVKKILKVKKAGHAGTLDPMATGILIVCINEATKITPFLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + +K Y A+ G TDT DA+G+IV EQ+ + L+ F G+I QIP MYSA+ Sbjct: 61 ELEKEYVFKAKFGISTDTYDAEGKIVRVVEDFKLEREQVESILEEFTGEIMQIPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GK L+E AR+G+E+ R+ + + ++ + E + + CSKGTY+R++ D+GE Sbjct: 121 KVGGKPLHELARKGVEIERKPKKVIIHSIKIESFEPPFVTFRVVCSKGTYVRSLCHDIGE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL GAH++ L R + ++ VE + LE L+ L+ + + + +D Sbjct: 181 KLRIGAHIVELTRTRIGEFRVEESIELEELKSLISNNLDSSAFSFQP-KKGIFSIDQALY 239 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTS-GAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 P V + F NGNPV+ G G V+V + GK +G+G + + P R+ Sbjct: 240 FLPSVTMQDYIIPRFLNGNPVKIPSGIVPAGWVKVKDT-RGKILGIG-YGNGVIIKPERI 297 Query: 309 VVEY 312 + E Sbjct: 298 IWEE 301 >UniRef50_Q2RMR8 tRNA pseudouridine synthase B n=11 Tax=Alphaproteobacteria RepID=TRUB_RHORT Length = 308 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 110/317 (34%), Positives = 170/317 (53%), Gaps = 19/317 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSR RRRG+ I+G L +DKP G++S D + +++R +A + GH G LDPLA+G+LPI G Sbjct: 1 MSR-RRRGQAIHGWLAIDKPVGITSTDVVNRLRRTMDAAKVGHGGTLDPLASGVLPIAFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK Y++D K Y ++ G+ DT D +G++++ V A+ + A L F G+IE Sbjct: 60 EATKTVSYVMDGTKVYHMVVGWGEARDTDDREGKVIDTSDVRPDAQAITAMLARFTGEIE 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL-ELEIHCSKGTY 179 Q+P +YSA+K +G++ Y+ AR V ++R I + +L + + I KG Y Sbjct: 120 QVPPIYSAVKVEGRRSYDLARADQAVELKSRKILIKDLTLLETSTPDFGHFRIVSGKGAY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R++ DL LG HV+ LRRLA + E ++L+ + L A Sbjct: 180 MRSLARDLALALGTVGHVVALRRLACGPFTAETAISLDMVDALGHDAPHS---------E 230 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT----SGAPLEGLVR---VTEGENGKFI 292 L+P+++ +D P V L + G PV S PL GL + V NGK + Sbjct: 231 SLLPIEAALADIPAVPLTEAEARRLSQGQPVSLLHLASRTPLNGLAQGETVQALLNGKLV 290 Query: 293 GMGEIDDEGRVAPRRLV 309 + +I EG + P R+V Sbjct: 291 ALAKIV-EGEIRPLRVV 306 >UniRef50_Q1G9Q1 tRNA pseudouridine synthase B n=27 Tax=Lactobacillus RepID=TRUB_LACDA Length = 298 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 159/307 (51%), Gaps = 24/307 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG++++DK GM+S D + K++R+ + GH G LDP TG+LPI LG+ATK + + + Sbjct: 3 NGIIVIDKAAGMTSGDVVYKLRRLLKQKKIGHAGTLDPEVTGVLPIALGQATKLIELMHE 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG TD+ D +G+I+ ER + S + + AA++ G+I Q P +YSA+ Sbjct: 63 RPKAYVGEGMLGLATDSYDLEGKILAERALSQPVSDQAIKAAMEKLIGEIVQQPPIYSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFI-------RHEGNELELEIHCSKGTYIRT 182 + GK+LYEYAR+GI V R R + V+ E+ CSKGTY+R+ Sbjct: 123 RVNGKRLYEYAREGIPVERPKRTVQVFLYDLTAPSQFDPEKGRQTFTYEVECSKGTYVRS 182 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 +++DLGE+LG A + LRR A S Y ++ VTLE L + ++ AE + Sbjct: 183 LVNDLGEELGLPAVMTKLRRTASSGYKLQDAVTLEELADNLDHAE-----------DYIQ 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 P+DS +DY V+L KNG ++ +V N + +G Sbjct: 232 PIDSFFADYQQVDLDAALWQQVKNGAWIKLPLDAD----KVALRYNKTVKAIYRAKGQGL 287 Query: 303 VAPRRLV 309 P ++ Sbjct: 288 YCPDLML 294 >UniRef50_C8NA97 tRNA pseudouridine synthase B n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NA97_9GAMM Length = 298 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 122/315 (38%), Positives = 168/315 (53%), Gaps = 18/315 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M + ++ I+GVLLLDKP G+SSN ALQ+ + +Y A +AGH G LDP ATG+LP+ G Sbjct: 1 MGKRKK----IDGVLLLDKPAGISSNQALQQARWLYQAEKAGHGGTLDPFATGLLPVLFG 56 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDI 119 EA+KF +Y LD DK Y G TDT D G ++ E P A A F G Sbjct: 57 EASKFGRYFLDGDKAYEATLAFGTETDTGDLSGAVIREAAPPPLDAVDWVALCAGFSGVQ 116 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q+P +YSALK G++ Y AR+G EAR + ++EL F+ +G+ + CSKGTY Sbjct: 117 RQVPPVYSALKVGGERAYALARRGELPQLEAREVVIHELRFLGMDGDGARFFVRCSKGTY 176 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR+++ D+ LG H LRR+AV+ M L LR E L Sbjct: 177 IRSLLRDMAAALGSAGHTHALRRVAVAGLTA--MTPLATLRAWQEAG------DMTALQA 228 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDD 299 LL+P+D + P V +P + +NGN + + G V + +G +F G+GE D Sbjct: 229 LLLPLDCCVAHLPRVVVPPEKLRFIRNGNDIACAAPH--GEVALYDG--ARFFGVGEARD 284 Query: 300 EGRVAPRRLVVEYPA 314 GRV P+RL PA Sbjct: 285 -GRVFPQRLCALPPA 298 >UniRef50_A8VS66 Pseudouridine synthase-like protein n=2 Tax=Bacillus RepID=A8VS66_9BACI Length = 317 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 103/321 (32%), Positives = 154/321 (47%), Gaps = 22/321 (6%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M + G+L L KP+GM+S A++K I +AGHTG LDP G+LPIC+G Sbjct: 1 MQKEAIMTNSKAGILPLWKPRGMTSFQAVRKAGGILKTKKAGHTGTLDPDVDGVLPICVG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGD 118 ATK +YL ++K Y +G T+T DA G+ VE R F+ +++ L G+ Sbjct: 61 RATKIVEYLTAAEKVYSGEVTIGWSTETEDASGETVETRMPEEAFTEQEVDDMLVQLTGE 120 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE------LELEI 172 +QIP MYSA+K GK+LYEYAR+G+ V R R ITV+ L Sbjct: 121 QKQIPPMYSAVKVNGKRLYEYAREGVSVTRPVRTITVHSLERTSPVYQHDNGSVSFTFTC 180 Query: 173 HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIP 232 HCSKGTYIRT+ +GEKLG AH+ L R A + E VT E + + ++ Sbjct: 181 HCSKGTYIRTLAVTMGEKLGYPAHMSRLTRDASGSFSKEDCVTFEDMEKYADEQP----- 235 Query: 233 AAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG--LVRVTEGENGK 290 + +L+P++ P + + G + + V +G+ Sbjct: 236 -----EHILLPIEHAFEHVPSLTVEDDDLTRILQGGILPLPKQMDDPDIPFFVIFDPDGR 290 Query: 291 FIGMGEID--DEGRVAPRRLV 309 I + + D G + P +++ Sbjct: 291 LIALYKKDPKRHGMMRPEKMI 311 >UniRef50_B3WER2 tRNA pseudouridine synthase B n=9 Tax=Lactobacillus RepID=TRUB_LACCB Length = 306 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 100/312 (32%), Positives = 152/312 (48%), Gaps = 23/312 (7%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 +G +NG+L L KP GM+S DA+ ++I + GH+G LDP G+LP+ +G TK Sbjct: 2 KGTAMNGILPLYKPTGMTSADAVYHARKILGIKKIGHSGTLDPNVDGVLPLAIGAGTKAV 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPS 124 L+ S K Y LG T T D DG++V++ P+ F+A+QL AAL + G+I QIP Sbjct: 62 PQLMASGKVYTGEITLGFATTTEDLDGEVVDKTPLTQPFTADQLDAALTAWTGNITQIPP 121 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-------EGNELELEIHCSKG 177 M+SA+K G++LYEYAR G V R R TV + E+H SKG Sbjct: 122 MFSAVKVNGRRLYEYARAGETVKRPERQATVSQFTRTDEPVFSATDGTQRFRFEVHVSKG 181 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIRT+ D+G+ LG A + L R+ + +++ V++E L+ L Sbjct: 182 TYIRTLAVDVGKTLGVAAVMSQLTRVKSGGFTLKQAVSIEQLKAHAAAG---------TL 232 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEI 297 ++ P+D +D P V+L + +G + RV G + Sbjct: 233 ADVIQPIDIAFADLPQVDLTVEQFEAISHGRFLSLDQQTP----RVRLHFAGVLKAIYRR 288 Query: 298 DDEGRVAPRRLV 309 +D+ P + Sbjct: 289 EDDQ-YRPDLMF 299 >UniRef50_Q3BRP7 tRNA pseudouridine synthase B n=20 Tax=Xanthomonadaceae RepID=TRUB_XANC5 Length = 308 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 129/308 (41%), Positives = 178/308 (57%), Gaps = 11/308 (3%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 +PR R ++G+LLLDKP G+SSN+ALQ +R+ A + GHTG+LDPLATG+LP+C GEA Sbjct: 2 KPRIVYRPLHGILLLDKPAGLSSNNALQAARRLLRAEKGGHTGSLDPLATGLLPLCFGEA 61 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQ 121 TK + LL S K Y LG TDT DADGQ + ER V S L AAL F G I+Q Sbjct: 62 TKIAGLLLGSAKAYDAEIVLGVTTDTDDADGQPLRERAVPDLSEADLQAALAPFIGRIQQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 +YSALK G+ LY AR+G + R + V + + + L L + C GTYIR Sbjct: 122 QAPIYSALKQGGEPLYAKARRGERIEAPVREVDVQAIDVLGYSAPGLRLRVTCGSGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 ++ DLGE LGCGAH+ LRRL V + +M+TLE L +E LL Sbjct: 182 SLARDLGEVLGCGAHIASLRRLWVEPFRAPQMITLEALSAALEAG--------TEARTLL 233 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 +P+++ + + + L T + F+ G +R + P G V V G +G G+G +D +G Sbjct: 234 LPIEAGLAGFARIVLDQTHAARFRMGQRLRDAAFPP-GQVAVF-GPDGTPSGLGLVDADG 291 Query: 302 RVAPRRLV 309 R++P+RL Sbjct: 292 RLSPQRLF 299 >UniRef50_A3VQI2 TRNA pseudouridine synthase B n=2 Tax=Alphaproteobacteria RepID=A3VQI2_9PROT Length = 320 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 97/321 (30%), Positives = 158/321 (49%), Gaps = 11/321 (3%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R RRRG+ ++G L+LDK S +A+ K++ +++A +AGH G LDPLATG+LP+ G Sbjct: 1 MAR-RRRGQPLHGWLVLDKAYDYGSTEAVSKLRWLFDAQKAGHAGTLDPLATGVLPVAFG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK Y+ D K YR A+ G+ T D +G+++ ++ A L F G+IE Sbjct: 60 EATKTVPYIQDGKKTYRFTAKWGEARSTDDREGEVIATSAHRPERSEIEARLCDFEGNIE 119 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGTY 179 QIP +SA+K G++ Y+ AR+G+ V +R + + L + +E E KGTY Sbjct: 120 QIPPAFSAVKIDGERAYDLAREGVAVTPPSRMVCIDRLSLLDCPSEDEAVFEAVTGKGTY 179 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR ++ DL + LG HV LRR AV + E VT+E L Sbjct: 180 IRALVRDLAKALGTVGHVAALRRTAVGPFSEEMAVTMEELTGRPSTDRLTVDDRPAEPAQ 239 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVR--------VTEGENGKF 291 L+P+++ +++ + + NG + + GL V E K Sbjct: 240 FLLPVEAALAEHLSATVDRAQAARLLNGGDAILAAPSMTGLRAGRAGDIEPVMAMEGDKP 299 Query: 292 IGMGEIDDEGRVAPRRLVVEY 312 + + ++ ++ P ++ Sbjct: 300 VAICRLEGM-KLRPVKVFAFR 319 >UniRef50_A0LE16 tRNA pseudouridine synthase B n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LE16_MAGSM Length = 319 Score = 300 bits (768), Expect = 5e-80, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 169/316 (53%), Gaps = 17/316 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R RR+G I+G L + K G+SS+ +++V R AN+AGH G LDP + G+LPI LG Sbjct: 1 MGRRRRKGVVIHGWLAIHKEPGLSSSQVVERVIRTTKANKAGHGGTLDPFSEGVLPIALG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 EATK S +L+ DK YR + GQ TD+ D G ++EE+ S +L A L F G+IE Sbjct: 61 EATKTSGMVLNGDKSYRCWLKFGQETDSGDLTGVLLEEQGRVPSEAELRAVLPQFMGEIE 120 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI 180 Q+P ++SAL+ G++ Y+ AR+G EV +R + + L + E + L++ C KGTYI Sbjct: 121 QVPPVFSALRVDGERAYKRARRGEEVQLASRRVRIDRLELVGFEADTAVLDVACGKGTYI 180 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R++ D+ L AH++ L R + + VTLE LRE + L + Sbjct: 181 RSLGVDIARALHSRAHLVRLLRTGTMGFGLNDAVTLEQLREACSEGR---------LQEI 231 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTEGENGKFIGMGEIDD 299 L P+D D P + + + + G V A G+VR+ + +G+F +GEI Sbjct: 232 LYPVDRVLDDIPALRMTGNAWYRLRQGQEVEVEDAATPAGMVRLQD-PDGQFGLLGEISA 290 Query: 300 EG------RVAPRRLV 309 + R+ P RL Sbjct: 291 QADLQGLRRIKPTRLF 306 >UniRef50_A5D2S3 tRNA pseudouridine synthase B n=3 Tax=Peptococcaceae RepID=TRUB_PELTS Length = 316 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 107/320 (33%), Positives = 170/320 (53%), Gaps = 30/320 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG++ + KP GMSS+D + +++RI+ +AGHTG LDP A G+L +CLG AT+ +++LL Sbjct: 1 MNGIVNVLKPPGMSSHDVVDRIRRIFGVKKAGHTGTLDPGAAGVLVVCLGVATRLARFLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE-QLAAALDTFRGDIEQIPSMYSAL 129 DK YRV G T T D+ G+I ++R +F E + L F G++ Q+P M SA+ Sbjct: 61 GEDKEYRVEITFGMSTSTGDSYGEITDQRDASFLKEHDIIRVLPEFTGEVRQVPPMTSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG-----NELELEIHCSKGTYIRTII 184 K++GKKLYE AR+G+ V R+ R + + L FIR G + + CSKGTY+R++ Sbjct: 121 KWRGKKLYELAREGLVVERQERAVYIKSLEFIRGSGWGTPSPRALMHLSCSKGTYVRSLC 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+G +LGCGAH+ +L R + + VTLE L+ + +L+ ++ M Sbjct: 181 HDMGSRLGCGAHMSFLVRTRAGPFKIADSVTLEELQAAASKG---------VLERKIIEM 231 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSG-------APLEGLVRVTEGENGKFIGMGEI 297 D S+YP V + ++ G+ + G LVR+T + + + E Sbjct: 232 DRAVSEYPEVIVKSSAVKAVAAGSKLYIPGVARMPLDLDCGKLVRLTGPDG--LLAIAEA 289 Query: 298 DDEG------RVAPRRLVVE 311 E P ++ Sbjct: 290 GREPFDKEKLFFKPVCVLAR 309 >UniRef50_A2RE90 tRNA pseudouridine synthase B n=24 Tax=Streptococcus RepID=TRUB_STRPG Length = 294 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 98/308 (31%), Positives = 155/308 (50%), Gaps = 23/308 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ L K GM+S+DA+ K++++ + GH G LDP G+LPI +G+AT+ +Y+ Sbjct: 2 INGIINLKKEAGMTSHDAVFKLRKLLQEKKIGHGGTLDPDVVGVLPIAVGKATRMIEYMT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYSA 128 ++ K Y LG T T DA G++V + + E + + TF G I Q P MYSA Sbjct: 62 EAGKVYEGQVTLGYSTTTEDASGEVVARSSLPAVLTEELVDQTMTTFLGKITQTPPMYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELL------FIRHEGNELELEIHCSKGTYIRT 182 +K G+KLYEYAR G V R R +T+ F ++ CSKGTY+RT Sbjct: 122 VKVNGRKLYEYARAGESVERPRREVTISLFERTSPLNFTEDGLCRFSFKVACSKGTYVRT 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + DLG LG +H+ +L+R A + +E TL + ++V + E L+ Sbjct: 182 LAVDLGRALGVESHMSFLQRSASAGLTLETAYTLGEIADMVSKQEMS----------FLL 231 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 P++ +D P + + T G + E L+ GE K I + E D+ Sbjct: 232 PIEYGVADLPKMVIDDTELTEISFGRRLSLP--SQEPLLAAFHGE--KVIAILEKRDQ-E 286 Query: 303 VAPRRLVV 310 P+++++ Sbjct: 287 YKPKKVLI 294 >UniRef50_C6P7U8 tRNA pseudouridine synthase B n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6P7U8_CLOTS Length = 289 Score = 299 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 97/302 (32%), Positives = 157/302 (51%), Gaps = 19/302 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP GM+S+D + +++ +N + GH G LDP A G+LPIC+G+ATK SQY++ Sbjct: 1 MDGFLNVLKPPGMTSHDVVSFLRKKFNIKKIGHLGTLDPGAAGVLPICIGKATKLSQYVV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR G TD+ D G I PV + +++ L F+GDI Q+P +YSA Sbjct: 61 SQSKTYRAEITFGFSTDSIDKFGNITNATPVKIFTIDRIQEVLTKFKGDILQVPPIYSAK 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-ELELEIHCSKGTYIRTIIDDLG 188 K GKKLYEYAR+G + +A PI +Y++ + ++ + +I CSKGTYIR ++ D+ Sbjct: 121 KINGKKLYEYAREGKSIEIKASPICIYDIKLVSYDIPYRIMFDIKCSKGTYIRALVRDVC 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +KL ++ L R++V + +E TLE ++ + ++P Sbjct: 181 DKLNIAGYMSMLIRISVGPFSLENSYTLEDIKTDKYNMIEMSN---------VLP----- 226 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 +P V L +G P+ + + + FIG+G++D RL Sbjct: 227 --FPDVYLNNFDYKKIIHGRPIENNYLDVNSNFVKLYNPDNLFIGIGKVDSSKIYV-ERL 283 Query: 309 VV 310 +V Sbjct: 284 LV 285 >UniRef50_A5GF89 tRNA pseudouridine synthase B n=7 Tax=Geobacter RepID=TRUB_GEOUR Length = 310 Score = 299 bits (766), Expect = 9e-80, Method: Composition-based stats. Identities = 98/306 (32%), Positives = 152/306 (49%), Gaps = 20/306 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G +++DK GM+S+D + V+RI + GHTG LDP ATG+LP+ LGEATK +L Sbjct: 1 MDGFIVVDKSAGMTSHDVVSAVRRIAGQKKVGHTGTLDPFATGVLPVALGEATKAIPFLD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +S K YR + +LG TDT D G+++ E + L F G + Q+P M+SAL Sbjct: 61 ESIKEYRAVMKLGVATDTQDYTGKVLHESDWSHVTTSALNEICRMFVGKLSQVPPMFSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G LY+ ARQG EVPR+ R I +Y L+ E+ + CS+GTY+RT+ +D+G Sbjct: 121 KQNGVPLYKLARQGAEVPRQPREIEIYSLVIEAVNLPEVAFTVRCSRGTYVRTLANDIGG 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCGAH++ L R + + +TL+ ++ + L+ + S Sbjct: 181 KLGCGAHLLQLHRSLSGPFSINNAITLDDWARRMQDGRAGET---------LVSPFAALS 231 Query: 250 DYPVVNLPLTSSVYFKNG--------NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 L + NG + + LVR++ G G + + + G Sbjct: 232 HLKDFILTGKGAAKVANGVVPALEDFQVLSECELLRDELVRMSFG--GTLLAVAKAGLPG 289 Query: 302 RVAPRR 307 + Sbjct: 290 DWKMLK 295 >UniRef50_B8FCY8 tRNA pseudouridine synthase B n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCY8_DESAA Length = 340 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 99/313 (31%), Positives = 153/313 (48%), Gaps = 21/313 (6%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 +G +G++++DKP G++S AL KVK+ +AGHTG LDP ATG+L CLG Sbjct: 3 GMQLEKGAVNHGIIVVDKPSGITSAKALDKVKKTLGVKKAGHTGTLDPFATGVLVCCLGA 62 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQI---VEERPVTFSAEQLAAALDTFRGD 118 AT+ +++ L DK Y + LG TDT D G++ +E + +Q+ A F+G+ Sbjct: 63 ATRLARFFLHGDKTYEAVMHLGIETDTQDLTGEVASRMEAEAAQVTPQQIREAAARFQGE 122 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 I+Q P +YSALK+QG LY++AR+G V ++AR IT+Y L CS G Sbjct: 123 IDQFPPVYSALKHQGVPLYKWARKGTPVQKDARRITIYSLDVTDINPPMAGFTARCSGGA 182 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIRT+ D+G +LGCGAH+ LRR S + +E VTL+ L +LV+ + ++ Sbjct: 183 YIRTLCADIGRELGCGAHLHALRRTENSGFSIEEAVTLDQLEDLVQSGK---------IN 233 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVR---------TSGAPLEGLVRVTEGENG 289 + PM P ++ +G + + G Sbjct: 234 EHVAPMAHALRQMPEYTASSQTAKKITHGAALTWLDLGEKTGRQDLQDNPKHIKVASQEG 293 Query: 290 KFIGMGEIDDEGR 302 + + +G Sbjct: 294 DLLAVLTPKTDGI 306 >UniRef50_B8CW75 tRNA pseudouridine 55 synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW75_HALOH Length = 303 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 165/299 (55%), Gaps = 22/299 (7%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 ++G++ + KP GM+S D + ++++Y+ +AGHTG LDP A+G+LP+CLG+ TK Y Sbjct: 2 SRVDGIISIIKPPGMTSFDVVAWIRKMYSVKKAGHTGTLDPAASGVLPVCLGKGTKIIPY 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMY 126 L D K Y LG +TDT D++GQI+EE + + L + F+G IEQ+P MY Sbjct: 62 LPDEVKGYVAEITLGVKTDTLDSEGQIIEENQKWESITDSHLNKVISDFQGVIEQVPPMY 121 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SA+KY+GK+LYE AR+G ++ RE R + + ++ + + +++L + CS GTYIR+I D Sbjct: 122 SAVKYKGKRLYELAREGKKIKREPRQVEIKKINILDIDLPKVKLFVLCSPGTYIRSIARD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +GEKLGCGA++ +L R + +E TL ++ D LL D Sbjct: 182 IGEKLGCGAYLSFLVRTRSGSFNLENSFTLSEIK--------------FRGDKLLYNFDY 227 Query: 247 PAS-DYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLV----RVTEGENGKFIGMGEIDD 299 P + + +++ S NG P+ S G V +V N F+ + + D Sbjct: 228 PLTNHFTRIDIRRGSRQKVYNGAPLYGSDIAKIYGKVTLRDKVLIYNNNTFLAIYRVSD 286 >UniRef50_D0LZ86 tRNA pseudouridine synthase B n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZ86_HALO1 Length = 371 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 109/304 (35%), Positives = 155/304 (50%), Gaps = 25/304 (8%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++GVL++DKP G++S + +VKR R GHTG LDP+ATG+LP+CLGEATK + Sbjct: 28 NKSALHGVLVVDKPAGITSAAVVARVKRHLGVRRVGHTGTLDPMATGVLPLCLGEATKIA 87 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ---LAAALDTFRGDIEQIP 123 YLL DK Y LG TDT DA+GQ+ P +A L L TF G EQ+P Sbjct: 88 GYLLAEDKGYEAELLLGVETDTLDAEGQVTARAPEAAAAVDEAALRRVLATFVGPGEQVP 147 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 M+SALK GK+L+E AR G EV R RP+ ++ELL +HCSKGTY+R++ Sbjct: 148 PMFSALKRGGKRLHELARAGQEVERPPRPVVIHELLLHAFATPRARFSVHCSKGTYVRSL 207 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DD+G LGCGAH+ LRR + + + + L + + E+A L+ Sbjct: 208 ADDIGRALGCGAHLSALRRTRSGAFAIAQAIPLAAIEDDPERAR-----------AALVS 256 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPV----------RTSGAPLEGLVRVTEGENGKFIG 293 + P V +P G P+ + + VR+ +G+ + Sbjct: 257 PAVAVAHLPAVAIPSEGVHDIACGKPMSWQRLSLLAPEAAAIACDAPVRLLL-PSGELVA 315 Query: 294 MGEI 297 + E Sbjct: 316 LAER 319 >UniRef50_B2A3A0 tRNA pseudouridine synthase B n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3A0_NATTJ Length = 299 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 109/310 (35%), Positives = 166/310 (53%), Gaps = 21/310 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L + K G +S+D +Q +++ Y + GH G LDP A G+LP+ LG+AT+FSQY+L Sbjct: 1 MLGFLTVCKTPGYTSHDVVQYLRKNYQVKKVGHLGTLDPGAVGVLPLALGKATRFSQYIL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA-EQLAAALDTFRGDIEQIPSMYSAL 129 DK+YR LG+ TDT DA G+ +E+ V + E L G+I Q+P MYSA+ Sbjct: 61 SQDKKYRFELTLGEATDTLDAQGKTIEKDEVQNTHIENLKNKYQELIGNINQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIID 185 K +GKKLYE AR+G EV R R +T++ L + + ++HCSKGTYIRT+ + Sbjct: 121 KQKGKKLYELAREGKEVERTPRQVTIHSLNLVDIYEHQGKHRFLFDVHCSKGTYIRTLAE 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DL + G ++ +L R A + ++ + + L L L P+D Sbjct: 181 DLAKLSGTVGYMSFLIRTATGIFNLDDAIFPQEL-----------PEQKTDLGIHLFPVD 229 Query: 246 SPASDYPVVNLPLT-SSVYFKNGNPVRTSGAPLEG-LVRVTEGE---NGKFIGMGEIDDE 300 P SD P + L + FKNGN V T+ G L R+ E + + F+G+G+I Sbjct: 230 YPLSDIPSLVLKESQQLKRFKNGNFVNTAVIAESGELYRIYEEDSSGDNLFLGLGKITSS 289 Query: 301 GRVAPRRLVV 310 + P +++ Sbjct: 290 NTLKPEKIIA 299 >UniRef50_B0THR7 tRNA pseudouridine synthase B n=2 Tax=Heliobacteriaceae RepID=TRUB_HELMI Length = 306 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 102/312 (32%), Positives = 159/312 (50%), Gaps = 20/312 (6%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++ G L L KP GM+S+D + K +R+ R GH G LDP A G+LPI +G+AT+ Sbjct: 2 EPLELEGFLNLLKPPGMTSHDVVAKARRLLKEKRIGHLGTLDPDAAGVLPIAIGQATRLI 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSM 125 + + DK YR RLG TD+ DA G+IV+ V S + L FRG I Q P M Sbjct: 62 ELVAGVDKAYRTQLRLGAVTDSQDASGRIVKTGAVPALSRDDWEETLRPFRGQILQTPPM 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE---GNELELEIHCSKGTYIRT 182 SA+ GK+LYEYARQGIEV R ARP+++ + + ++ E+ +++ CS GTYIRT Sbjct: 122 VSAVSVGGKRLYEYARQGIEVERSARPVSISRIEIVHYDPATPEEIVIDVECSAGTYIRT 181 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + D+G++LGCG H+ +L R + + +TLE L E + + ++ Sbjct: 182 LCHDIGQRLGCGGHMGWLIRTRSGLFSLRDSLTLESLAEGPPK------------EQIVT 229 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNG--NPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 P ++ + P + + G ++ G +R+ + +G DE Sbjct: 230 PFEA-LAHLPALEIGENRLAALSRGLAQYLQGDGWSEGQWIRMHRRQKLLAVGQAIRKDE 288 Query: 301 GRVA-PRRLVVE 311 + PR++ Sbjct: 289 QWLCQPRKVFTR 300 >UniRef50_D2RKW1 tRNA pseudouridine synthase B n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKW1_ACIFE Length = 297 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 158/300 (52%), Gaps = 17/300 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ + KP GM+S+D + +++I + + GH G LDPLA G+LP+ G AT+F +Y Sbjct: 1 MDGIFNVLKPPGMTSHDVVGALRKILHMKKIGHGGTLDPLAAGVLPVFTGMATRFLEYAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +K YR G +TDT D +G ++ E PV +AE++ AAL +FRG+ QIP MYSA+ Sbjct: 61 HEEKSYRAELTFGFQTDTGDTEGAVIAESPVRDLTAEEIEAALASFRGEGTQIPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 G KLY+ ARQGIEV RE RPIT+YEL + + G L ++ CSKGT+IRT+ +DL Sbjct: 121 SVGGTKLYKLARQGIEVKREPRPITLYELEKVDYTGKTLVFDVTCSKGTFIRTLCEDLAA 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG + +L R + +E TL+ + E M ++ + Sbjct: 181 KLGMKGTMSFLLRRRAGVFRLEDAHTLQEIAADPEG--------------CCMGVEPILA 226 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 +P + G G L ++ +G +G+ D GR+ +++ Sbjct: 227 GFPKKIVNALQGRRIAQGVATTLPGLTEGTLYQLWT-RDGVLVGLARAVD-GRLRAHKII 284 >UniRef50_A4J5W9 tRNA pseudouridine synthase B n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5W9_DESRM Length = 310 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 98/320 (30%), Positives = 172/320 (53%), Gaps = 31/320 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV+ + KP GM+S+D + V+R+ + GHTG LDP A+G+LP+C+G+AT+ ++++ Sbjct: 1 MDGVINILKPPGMTSHDVVFFVRRVTGVKKCGHTGTLDPGASGVLPVCVGKATRLARFVT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 D DK YR LG T + DA G ++ + + ++ L F+G+I+Q P M SA+ Sbjct: 61 DGDKTYRAEITLGIETSSQDAFGNVISRIDASAIKLDDFSSELRKFQGEIKQTPPMASAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE-----GNELELEIHCSKGTYIRTII 184 K +GKKLYE R+GI V R +T+Y++ + + ++ CSKGTY+RT+ Sbjct: 121 KVKGKKLYELEREGIIVDVPTRTVTIYQVNIVDSWDWGTPNPRVLFDVACSKGTYVRTLC 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+G++LGCGA++ +L R V+ + + TLE + L ++ L+ ++PM Sbjct: 181 SDIGKELGCGAYMSFLLRSRVAAFGLHNAYTLEEIAALADK---------SQLESAVIPM 231 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSG-------APLEGLVRVTEGENGKFIGMGE- 296 P+V + ++ +G + +G EGLV+V N + +G+ + Sbjct: 232 AKAVQHLPIVEIHPSAQKSVCSGATLYPAGVRVGLEYLKPEGLVQVQL--NHELLGIYKP 289 Query: 297 ---IDDEG---RVAPRRLVV 310 ++D G + P + Sbjct: 290 VLDVNDFGERIILRPEVVFA 309 >UniRef50_C9R8X3 tRNA pseudouridine synthase B n=1 Tax=Ammonifex degensii KC4 RepID=C9R8X3_AMMDK Length = 303 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 92/275 (33%), Positives = 147/275 (53%), Gaps = 14/275 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + GVL + KP GM+S+D + ++R+ + GH G LDP A G++ + +G+AT+ +Q+L+ Sbjct: 1 MIGVLNVLKPPGMTSHDVVDWLRRLTGEKKVGHAGTLDPDACGVMVLLIGKATRAAQFLV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK YR A G RTDT D G+++ + + + E +A L F G I Q P M+SA+ Sbjct: 61 TEDKEYRAEAVFGVRTDTLDLSGRVLACQDASWLTPEAVAEVLPQFTGSIWQKPPMFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG----NELELEIHCSKGTYIRTIID 185 +Y+GK+L+E AR G EV R + VY L ++ + + L +HC KGTY+R+++ Sbjct: 121 RYKGKRLHELARAGQEVEVPPRRVEVYSLQLLKGDWGKRHPRVWLHVHCGKGTYVRSLVA 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DLGE LG GA + +L R V ++ + TLE L L E+ + L L+P+ Sbjct: 181 DLGEALGTGACLGFLLRTRVGRFGIGEAYTLEELARLKEEGK---------LAKALIPLA 231 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 P + + + KNG + + Sbjct: 232 EALGHLPAIEVGEEGAKRIKNGGFLSPAHCLAGKW 266 >UniRef50_Q67P83 tRNA pseudouridine synthase B n=3 Tax=Bacteria RepID=TRUB_SYMTH Length = 299 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 104/315 (33%), Positives = 152/315 (48%), Gaps = 23/315 (7%) Query: 1 MSR-PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R +++GVL L KP GM+S+D + V+R +AGHTG LDP G+LP+C+ Sbjct: 1 MARAQNEAASEVDGVLNLLKPPGMTSHDVVAFVRRALGVKKAGHTGTLDPGVAGVLPVCV 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGD 118 G AT+ ++Y+ SDK YR G TDT D G++V E + +A AL F G Sbjct: 61 GRATRLAEYIAGSDKAYRAEITFGVATDTQDGFGEVVAEADASHLTRGDVAYALTRFHGP 120 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---NELELEIHCS 175 IEQ+P M SA+K GK+LYE AR+G+EV RE R + ++ L + +++ CS Sbjct: 121 IEQVPPMVSAVKVGGKRLYELARKGVEVEREPRRVFIHRLQLLDFRPGPRPVAYIDVVCS 180 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 KGTY+RT+ DLG L GAH+ YL R + + + TLE L Sbjct: 181 KGTYVRTLAHDLGRFLQVGAHLSYLVRTRSGPFVLAQAATLEELAA-------------- 226 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG-LVRVTEGENGKFIGM 294 L+P + D P V + ++ +G +G V V Sbjct: 227 -GKARLLPPAAALGDMPRVTVSGRAAARVLHGVAPAVRVEHPDGTTVAVVAANGALLA-- 283 Query: 295 GEIDDEGRVAPRRLV 309 D G + R++ Sbjct: 284 LAEADGGGLRLRKVF 298 >UniRef50_D1VSB0 tRNA pseudouridine synthase B n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB0_9FIRM Length = 293 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 97/294 (32%), Positives = 166/294 (56%), Gaps = 14/294 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+LL++K +G++S+D + V++ N + GH G LDP+ATG+L I +G+ATK S Y++ Sbjct: 1 MDGILLINKKKGITSHDVISIVRKKLNIKKVGHCGTLDPMATGLLIILIGKATKLSDYIM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y +LG TD+ D G I+E + T ++L L +F G+++QIP MYSA+K Sbjct: 61 KNRKTYLAKVKLGLLTDSYDITGNILENQDFTVDKDKLIEVLKSFVGEVKQIPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG-NELELEIHCSKGTYIRTIIDDLGE 189 GKKLYEYAR+G+EV R+ R + +Y + + G +E + S GTYIRT+ D+G Sbjct: 121 VNGKKLYEYARKGVEVKRKERLVKIYSMELLDFNGKDEFVINCDVSSGTYIRTLAFDIGR 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL ++ L+R ++S + + + ++ + + E L+ ++PM+ Sbjct: 181 KLNTYGTLLELQRNSISNFNLNECLNIDDIESI----------DLEELNNRIIPMEKALL 230 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID-DEGR 302 ++ + P NG +T + + R+ + KFIG+G ++ D GR Sbjct: 231 NFEKFSYPSDFYDKLLNGIKFQTEKDFEDKIFRLYCRD--KFIGLGRMEVDNGR 282 >UniRef50_A4A2R8 TRNA pseudouridine synthase B (Fragment) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2R8_9PLAN Length = 280 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 95/294 (32%), Positives = 145/294 (49%), Gaps = 15/294 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L + KP G +S DA+ +V R + GH G LDPLATG+L C+G T+ +YL Sbjct: 1 MHGILNIHKPPGWTSRDAVNRVNRFVRPAKVGHAGTLDPLATGVLICCVGSGTRLIEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 KRY LG+ +DT D +G + E SA QL A L F G+I Q PS +SA+ Sbjct: 61 QMPKRYVGQFELGKTSDTEDLEGVVTEIVDAPEISAAQLTAILPEFVGEILQRPSTFSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GK+ Y+ ARQG V RPIT+YE+ E E+++ C GTY+R + D+GE Sbjct: 121 KVDGKRAYKLARQGAAVELAPRPITIYEITLRGFEYPRFEIDVLCGGGTYMRALGRDIGE 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LG GA + L+R A+ + +E + L+ L E + L P+ + S Sbjct: 181 RLGSGAVMTGLQRTAIGDFRLEDAIPLDELSA-------------ESVAENLSPLSTAVS 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 P + L +R + + + + G+ I + ++ R Sbjct: 228 QAPQITLTPEEVNEMIYARGIRATMESPAAEIAAMD-QQGRLIAILTRREDQRW 280 >UniRef50_C6LME9 tRNA pseudouridine synthase B n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LME9_9FIRM Length = 332 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 106/340 (31%), Positives = 162/340 (47%), Gaps = 51/340 (15%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ING++ + K +G +S+D + K++ I + + GHTG LDP A G+LP+CLG AT+ L Sbjct: 2 INGIVNVYKEKGFTSHDVVAKLRGILHQKKIGHTGTLDPEAEGVLPVCLGNATRLCDMLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D DK YR + LGQ TDT D G ++ S E + +A+ F G EQ+P MYSALK Sbjct: 62 DKDKTYRAVLLLGQTTDTQDTTGTVLSTCAEIPSEEAVRSAVTGFIGPYEQVPPMYSALK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYE AR+G V R+AR + +Y + + + + + CSKGTYIRT+ D+GE+ Sbjct: 122 VGGKKLYELAREGKTVERQARTVQIYGITIEDIQLPRVTMTVSCSKGTYIRTLCHDIGER 181 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCG + L R V + + + L + +L L+ ++P+++ + Sbjct: 182 LGCGGCMEALLRTRVGAFVLADSLRLSEIEKLQSDGN---------LENSIVPVEAMFAQ 232 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSG------------------------------------ 274 YP + + NGNP+ Sbjct: 233 YPALRTKAAADRLLYNGNPLEAQNLQKAPEENASDALSKAALTKAAGAVRRTAEEKCTPE 292 Query: 275 ----APLEGLVRVTEGENGKFIGMGEIDDEG-RVAPRRLV 309 P E VR+++ G+F G+ E R P ++ Sbjct: 293 SGGTLPPEEWVRISDS-AGRFCGIYRYVPEKRRYQPVKMF 331 >UniRef50_UPI00016C5566 TruB n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5566 Length = 286 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 109/299 (36%), Positives = 155/299 (51%), Gaps = 18/299 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPICLGEATKFSQYL 69 +NG+L++DKP GM+S DA+ +V+R + + GHTG LDPLATG+L +C+G AT+ + Y+ Sbjct: 1 MNGLLVIDKPGGMTSRDAVNRVQRWFPKKTKIGHTGTLDPLATGVLVVCVGAATRLADYV 60 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y RLG + + DADG + + V + E + A+L F G IEQ+P SA Sbjct: 61 QAMGKTYASRFRLGATSTSDDADGTVTDTPGAVPPTGEAVEASLQRFVGVIEQLPPAVSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK G++ ++ RQG EV RP+ + + ++ ++E+ C KGTYIR+I DLG Sbjct: 121 LKVDGRRAHDLVRQGKEVTLAPRPVRIDAVRLTGYDWPFADVEVDCGKGTYIRSIARDLG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCG V LRR V Y E VTL+ + LMPM S Sbjct: 181 AALGCGGMVQTLRRARVGCYLAEDAVTLD--------------LDPGEVGKHLMPMSSAL 226 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSG--APLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 S P V + F+ G V T+G +P G V + IG+G + G V P Sbjct: 227 STLPAVRISAEVVTRFRQGQTVATAGEASPQPGEEVVVIDGFQEVIGIGAVLPNGFVKP 285 >UniRef50_O66922 tRNA pseudouridine synthase B n=2 Tax=Aquificaceae RepID=TRUB_AQUAE Length = 287 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 108/302 (35%), Positives = 170/302 (56%), Gaps = 17/302 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G LL+DKP+G++S + +++VK A +AGHTG LDP+ATG+L I + +AT+FSQ+ + Sbjct: 1 MDGALLIDKPKGITSTEVVERVKEKLKARKAGHTGTLDPIATGLLIILINKATRFSQFFI 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K YR + G TDT DA G++VE + ++L L+ FRG+I Q P +SA K Sbjct: 61 GMPKTYRFTVKFGAETDTYDAQGKVVETYEGELNCDKLKEVLNEFRGEILQTPPPFSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN--ELELEIHCSKGTYIRTIIDDLG 188 +G++ YE AR+G +V + ITVY L + E E S G Y+R++ D+G Sbjct: 121 IKGRRAYELARKGKKVELKPVKITVYSLELLSCNPREKEAEFLAEISSGGYVRSLAYDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +KLG G ++ LRRL + + VE V+LE ++E + ++P+D+ Sbjct: 181 KKLGIGGYMKELRRLKIDEISVEEAVSLEEF------------LSSENPEEYVLPVDTLF 228 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 P V L + G + EGLV++ E+ KFIG+GE+ G ++P+RL Sbjct: 229 RVIPEVRLNTFEAGKILQGKRILIKNYDYEGLVKIY--EDSKFIGIGELKG-GVLSPKRL 285 Query: 309 VV 310 +V Sbjct: 286 LV 287 >UniRef50_A5IIS7 tRNA pseudouridine synthase B n=9 Tax=Thermotogaceae RepID=TRUB_THEP1 Length = 309 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 86/295 (29%), Positives = 153/295 (51%), Gaps = 20/295 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L+ KP+G +S+D + +V++ + GH G LDP A G+L I + + T+ ++ D Sbjct: 3 HGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y V RLG T+T D G++VEER + E++ A+ +F G+ +Q+P YSA K+ Sbjct: 63 LKKVYWVKMRLGLITETFDITGEVVEERECNATEEEIREAIFSFVGEYDQVPPAYSAKKH 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 +G++LY+ AR+G + + + ++++ + EG ++ S GTYIR++ D+G KL Sbjct: 123 KGERLYKLAREGKIINLPPKRVKIFKIWDVNVEGRDVSFRAEVSPGTYIRSLCMDIGYKL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 GCGA + L R +V Y +E + + A E ++ ++P++ Sbjct: 183 GCGATAVELVRESVGSYTIEESLNVFE-------------AAPEEIENRIIPLEKCLEWL 229 Query: 252 PVVNLPLTSSVYFKNGNPVRT------SGAPLEGLVRVTEGENGKFIGMGEIDDE 300 P V + S+ NG+ + G +VRV E G+ + + E + Sbjct: 230 PRVVVHQESTKTILNGSQIHLEMLKEWDGFKKGEVVRVF-NEEGRLLALAEAERN 283 >UniRef50_A6GNL1 tRNA pseudouridine synthase B n=2 Tax=Burkholderiaceae RepID=A6GNL1_9BURK Length = 344 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 124/339 (36%), Positives = 188/339 (55%), Gaps = 36/339 (10%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 + +++ R ++GVLL DK G SSN ALQ VKR+Y A + GHTG LDPLA+G+LP+ GE Sbjct: 7 AETKKQKRALSGVLLFDKSTGFSSNQALQIVKRLYRAEKTGHTGTLDPLASGLLPLMFGE 66 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVE---ERPVTFSAEQLAAALDTFRGD 118 ATKF+ L+D+ K YR RLG ++T DA+G++ + + + +++ + F G+ Sbjct: 67 ATKFAADLIDASKTYRTKVRLGFSSNTGDAEGELTKVGNRALESITEDEVKQVCEQFVGE 126 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--------NELEL 170 I+Q+P M+SALK GK LYEYAR+GIE+ R AR + +++L I+ E +EL Sbjct: 127 IQQVPPMFSALKKDGKPLYEYAREGIELDRPARTLLIHQLDVIKVEHNTNHGESSCTIEL 186 Query: 171 EIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD 230 E++CSKGTY+RT+ +D+ + LG ++ LRR A+ VER TLE L+ L E Sbjct: 187 EVNCSKGTYVRTLGEDIAKALGTAGYLTELRRTAIGDLKVERAYTLEALKVLGESE---- 242 Query: 231 IPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS-GAPLEGLVRVT----- 284 + LD +L P+D+ V L + F +G + G VRV Sbjct: 243 -TPFDALDAVLFPVDALLGSLGKVELNNEFARRFSHGQRLPLELADAKPGRVRVYGEAPA 301 Query: 285 -----------EGENGKFIGMGEIDDEGR---VAPRRLV 309 N +F+G G ++ +G+ + P RL+ Sbjct: 302 QDVNTEVSNTAFKGNSRFMGTGILETDGKGALLRPDRLI 340 >UniRef50_Q38W87 tRNA pseudouridine synthase B n=3 Tax=Lactobacillaceae RepID=TRUB_LACSS Length = 305 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 100/311 (32%), Positives = 146/311 (46%), Gaps = 19/311 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ L K +GM+SND + KV+RI + + GH+G LDP G+LPIC+G+ATK L+ Sbjct: 1 MDGIIPLYKERGMTSNDCVFKVRRILHMKKVGHSGTLDPNVDGVLPICIGQATKVVDQLV 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 S K Y LG T T D DG++VEE+ S E++ L +F G+ QIP M+SA Sbjct: 61 HSGKVYTGEITLGLSTTTEDLDGEVVEEQQLTEPISTEKIKETLASFLGESIQIPPMFSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLF-------IRHEGNELELEIHCSKGTYIR 181 +K G++LY+YAR G V R R IT+ + + CSKGTYIR Sbjct: 121 VKVNGRRLYDYARAGDPVERPQRKITITQFDLQGEPEFDAKTGRQTFRFIAGCSKGTYIR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D G KLG A + L RL + VTL L E + + L +L Sbjct: 181 TLAVDFGRKLGLPAVMSDLTRLKSGGIQIGSCVTLAQLAEAADNGQ---------LADIL 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEG 301 +P+D + + L NG + E L EG + Sbjct: 232 IPLDHVFEENVKIALDDDQWAKILNGVFLTFPEQTEEILALTYEGHIKALYQVANAKQH- 290 Query: 302 RVAPRRLVVEY 312 P ++ ++ Sbjct: 291 LYRPYKMYLQN 301 >UniRef50_Q2KXZ0 tRNA pseudouridine synthase B n=2 Tax=Proteobacteria RepID=TRUB_BORA1 Length = 244 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 112/242 (46%), Positives = 152/242 (62%), Gaps = 5/242 (2%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +RRG+ ++GVLLLDKP G+SSN ALQ+ KR +A +AGHTG LDP ATG+L C+G ATK Sbjct: 3 KRRGQPLDGVLLLDKPVGLSSNHALQRAKRTLDAAKAGHTGTLDPFATGLLLCCMGRATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQ 121 S +L++DK YR + G+ TD+ D G IV P L L F+G IEQ Sbjct: 63 ISGAMLNADKTYRATLQFGEETDSGDLTGNIVARAPEDFPGVEEANLREVLSRFQGSIEQ 122 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 IP MYSALK GK LYEYAR GIE+ R R + +Y + + G++ E+++ CSKGTYIR Sbjct: 123 IPPMYSALKRDGKPLYEYARAGIELERPPRRVMIYRIELLSFTGHQAEIDVACSKGTYIR 182 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G LGC AH+ LRR V + ++R VTL+ L+ + + + + A L L Sbjct: 183 TLAQDIGRALGCYAHLFALRRTQVGPFSLDRAVTLDALQAMTD--PKAALLALNELPAGL 240 Query: 242 MP 243 +P Sbjct: 241 LP 242 >UniRef50_C0QUQ5 tRNA pseudouridine synthase B n=5 Tax=Aquificales RepID=C0QUQ5_PERMH Length = 293 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 94/305 (30%), Positives = 171/305 (56%), Gaps = 17/305 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYN-----ANRAGHTGALDPLATGMLPICLGEATKF 65 ++G+LL+DKP+ ++SN +QK+K+ + + GHTG LD A+G++ I +G+AT+ Sbjct: 1 MDGILLVDKPENITSNHLVQKIKKHFKQITGKEIKVGHTGTLDYFASGLMVITVGKATRL 60 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 ++Y DK Y LG+ TDT D G+++EE+ +QL + +F+ Q P Sbjct: 61 TEYFQGLDKEYIATGELGKITDTYDRQGRVIEEKECKIDEDQLKDIILSFKKRYLQTPPP 120 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YS+ + +GK+ Y+ A++GI+V + + +T+Y + ++ E +++HCS GTYIR+++ Sbjct: 121 YSSKRIEGKRAYQLAKKGIQVKLKPKEVTIYSIQILKIEMPFFTIKVHCSSGTYIRSLVK 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 ++G+K GCGA+V LRR V + VE + LE L + EQ ++ L+ + Sbjct: 181 EIGDKAGCGAYVKSLRRTKVGIFSVENAIKLEELLRMTEQD----------IESRLIDIK 230 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + L F G + ++GLV+V + +N +F+G+GEI + + P Sbjct: 231 DALYFFTEILLDPVFDERFIKGQRFKVP-YSIKGLVKVLD-KNKRFLGIGEIKENQILQP 288 Query: 306 RRLVV 310 ++ + Sbjct: 289 VKVFI 293 >UniRef50_A6C3H8 tRNA pseudouridine synthase B n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C3H8_9PLAN Length = 310 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 145/320 (45%), Gaps = 19/320 (5%) Query: 1 MSRPRRRG-RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 MS + I+G+L ++KPQ ++S + +V+++ R GH G LDPLATG+L +C Sbjct: 1 MSSKKSGADLKISGLLNINKPQDITSRQVVDQVQKLIKPARVGHAGTLDPLATGVLVLCT 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGD 118 G T+ + + K Y LG+R+DT D G+I E + +L L F G Sbjct: 61 GSNTRLIRLVQQQPKEYIGEFLLGKRSDTDDITGEISETADCRQVTLPELETCLPAFEGR 120 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGT 178 I+QIP YSA+ G++ Y+ AR+G + R + VYE+ + +L I C GT Sbjct: 121 IQQIPPQYSAVHINGRRAYDLARRGKSFEIQPREVDVYEIELLDFSFPRFQLRIVCGSGT 180 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIR+I DLGE+LG GA + L R + + ++ + L+ + + Sbjct: 181 YIRSIGRDLGEQLGVGATMSALTRTRIGPFTLDSAMELDE------------ELSLGTIA 228 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTS----GAPLEGLVRVTEGENGKFIGM 294 + P P + + G ++ A E + + + + Sbjct: 229 DNIQPAILAVEQLPHYHCNERELLSLSQGQKLKCKPEYFPATHEIIEVAVISPQTELVAI 288 Query: 295 GEIDDEG-RVAPRRLVVEYP 313 + + E +++PR++ P Sbjct: 289 ADWEPEAHQLSPRQVFHPAP 308 >UniRef50_UPI0001C373A4 tRNA pseudouridine synthase B n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C373A4 Length = 297 Score = 293 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 156/298 (52%), Gaps = 14/298 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+L ++KPQ +S D + K++ I R GH G LDP+ATG+LP+ +G ATK + Sbjct: 1 MNGILCVNKPQDFTSFDVVAKLRGILKMKRLGHGGTLDPMATGVLPVFVGNATKAVDIMP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y RLG +DT D G + S +++ A L FRG+I QIP MYSA++ Sbjct: 61 VTLKSYTADFRLGFTSDTQDVWGNAEKVSDKAVSPDEIEAVLPQFRGNIMQIPPMYSAVQ 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--NELELEIHCSKGTYIRTIIDDLG 188 G++LY+ AR+GIEV R+ R ++ L + ++ E LEI CS+GTY+RTII+D+G Sbjct: 121 VNGQRLYDLARKGIEVERQPRETEIHTLNMLSYDPVTREGVLEIECSQGTYVRTIINDIG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 EKLG G + L R + + + T + +++ ++ L++P++ Sbjct: 181 EKLGVGGIMTGLVRNSACGFALSECHTFDEIQKAADEGRVG---------ELILPIERVF 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPV---RTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 P + L + ++NG + R + G +G FIG D E + Sbjct: 232 DTLPKLRLGEAQTRMYRNGVKLDLERIRNIREDADCYAVYGSDGGFIGTALTDRENGI 289 >UniRef50_Q1IPJ6 tRNA pseudouridine synthase B n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IPJ6_ACIBL Length = 302 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 154/301 (51%), Gaps = 12/301 (3%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++ VL++DKP G +S+D + +++R+ + AGH G LDP+ATG+LP+ LG T+ SQ+ Sbjct: 2 PLDAVLVIDKPAGWTSHDVVARLRRVLSERSAGHLGTLDPMATGVLPVVLGRYTRLSQFY 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 S+K Y R G T+T DA+G+ V E + V + E + A F G + Q+P +SA Sbjct: 62 NHSEKSYEGEIRFGFATNTYDAEGETVGEAQTVQVALEGVREASREFVGPLSQLPPPFSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-LELEIHCSKGTYIRTIIDDL 187 K G Y+ AR+ +EV + I V++ + + H S GTYIR++ DL Sbjct: 122 KKINGVPAYKLARKNVEVELKPSAIEVFQFEVFEGSAPDRIGFRAHVSSGTYIRSLAHDL 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G+KLGCGAH+ LRR V+++ +++ TLE + V + +++ ++P Sbjct: 182 GQKLGCGAHLASLRRTTVAEFTIDQAHTLEAVETAVAKGNPEELFVHP---RRILP---- 234 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P V + Y +NG V LV+V G + + + + P+ Sbjct: 235 --QLPCVTANDETVAYIRNGRAVNLPEFSKAKLVKVFAG-QAEIVCVAQRIAGTLFHPKL 291 Query: 308 L 308 + Sbjct: 292 V 292 >UniRef50_Q5FQM1 tRNA pseudouridine synthase B n=9 Tax=Acetobacteraceae RepID=TRUB_GLUOX Length = 333 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 155/322 (48%), Gaps = 18/322 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R R GRDI+G L+LDKP G +S D + K++ ++A +AGH G LDPLA+G+LPI G Sbjct: 1 MGRKR--GRDIDGWLILDKPLGPTSTDMVNKLRWAFDAKKAGHGGTLDPLASGVLPIAFG 58 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 +AT+ Y++D+ KRYR G+ T D +G+++ P + +Q+ A L G++ Sbjct: 59 KATRTIPYIMDATKRYRFTLTFGESRTTDDLEGEVLATSPNRPTDDQIRAVLPALTGNVM 118 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGTY 179 Q+P ++SAL+ G++ Y+ AR G RP + + + + N ++ KG Y Sbjct: 119 QVPPVFSALRVGGERAYDMARAGRPPELPPRPARIDSITLVERPDANTAVFDVQSGKGVY 178 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R++ D+ G H+ LRR + + +T++ + Q + A+ L Sbjct: 179 MRSLARDIALACGTVGHISVLRRTKCGPFDLSHALTIDQIS---LDKSTQTVDNADALPA 235 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGN---------PVRTSGAPLEGLVRVTEGENGK 290 L+ + D P + + G P+ S + L R GE Sbjct: 236 PLLDAATALVDIPALAVTDAEGRMLVWGQSIDPADLVHPLPASSQGEDHLWRAMIGE--H 293 Query: 291 FIGMGEIDDEGRVAPRRLVVEY 312 +G+ + GR+ R++ + Sbjct: 294 VLGLCHVR-HGRLRAARMLENH 314 >UniRef50_UPI000185BE2E tRNA pseudouridine synthase B n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BE2E Length = 328 Score = 292 bits (749), Expect = 9e-78, Method: Composition-based stats. Identities = 94/323 (29%), Positives = 162/323 (50%), Gaps = 26/323 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++++DKPQG +S+D + K++RI+ + GH+G LDP+ATG+L + +G T+F ++ Sbjct: 10 SGIVIVDKPQGWTSHDVVGKLRRIFRTKKVGHSGTLDPMATGVLVLGIGRGTRFLPHVHA 69 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K YR RLG T T DA+G+++ E + + E + + F G I Q P+ SA+K Sbjct: 70 DTKSYRATIRLGAATLTDDAEGELLSESSAASVTDEMIREKITDFTGTIMQKPAAVSAVK 129 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRH----------EGNELELEIHCSKGTYI 180 G + YE R+G +V ARP+T+ + E ++++E+ CS GT+I Sbjct: 130 IDGVRAYERIRRGEKVDIPARPVTITRYEVLDIRHDSDTSRPGECIDIDVEVDCSAGTFI 189 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + DLG+ LG G H+ LRR A + ++ +T++ L EQ + + AE+ P+ Sbjct: 190 RALARDLGDALGVGGHLTALRRTAAGVFTIDEALTIDELTAKAEQFDTANPEIAEMRRPI 249 Query: 241 ------LMPM---DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKF 291 L+PM ++ + + + G + G P V GK Sbjct: 250 PDRAASLLPMSLDEACLRCFDTREITEQQAADLAQGKWLEPIGKPG---VYAAVSPTGKV 306 Query: 292 IGMGEIDDEGRVAPRRLVVEYPA 314 + + + G+ + + V PA Sbjct: 307 PAL--LTESGK-RAKTVFVVRPA 326 >UniRef50_C4V3N1 tRNA pseudouridine 55 synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3N1_9FIRM Length = 290 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 101/304 (33%), Positives = 144/304 (47%), Gaps = 22/304 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + + KP GMSS+D + V+RI++ R GH G LDP A G+LPI LG A + +YL Sbjct: 1 MDGFINVLKPTGMSSHDVVDVVRRIFHQKRVGHAGTLDPAAAGILPIALGRAARLVEYLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVE--ERPVTFSAEQLAAALDTFRGDIEQIPSMYSA 128 +DK YR G TDT D G + E E PV +AE++ A L FRG I Q P YSA Sbjct: 61 GADKSYRAEIAFGYATDTGDVYGMVTERSEHPVLPAAEEIEAVLARFRGCITQRPPAYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDD 186 +K GK+ + RQG V R +T++ L + + + +++ CSKGTYIR++ D Sbjct: 121 IKVGGKRAADLVRQGRAVDIPPRKVTIHRLELLHIDAVRQRIRIDVDCSKGTYIRSLCAD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 +G L A + +L R V + + T E L E E A + D Sbjct: 181 IGAGLHLPATMRFLLRSRVGAFTLADAYTPEELAEAGEDA--------------VCAADR 226 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-GRVAP 305 P L F +G GL RV +G F+G+G D + P Sbjct: 227 AL-SLPCYELTQQRVKAFYSGLSTTERRPLAAGLYRVYA--DGVFLGIGRYDANAQEMYP 283 Query: 306 RRLV 309 + Sbjct: 284 EKAF 287 >UniRef50_C7RGP3 tRNA pseudouridine synthase B n=4 Tax=Anaerococcus RepID=C7RGP3_ANAPD Length = 298 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 104/304 (34%), Positives = 165/304 (54%), Gaps = 16/304 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L +DK +G+SS + V+R N + GHTG LD A+G+LPI +G+AT+ S Y++D Sbjct: 3 SGILNVDKEKGISSARVVSLVRRGLNQKKVGHTGTLDLEASGVLPIVVGKATRVSDYMMD 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y + G++TDT DA G++++E T E L L+ ++G+IEQIP MYSALK Sbjct: 63 KDKTYECLMEFGKKTDTLDAAGEVIKESSKTCKREDLEEVLEKYKGEIEQIPPMYSALKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GKKLY+ AR G E+ R+ R + +Y+L I + ++ + CSKGTYIRT++DD+GE L Sbjct: 123 DGKKLYDLARSGKEIERKKRKVKIYDLKLIDFDFPYAKISVTCSKGTYIRTLVDDIGEDL 182 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 C + V LRR+ + + V+ V + E+ + L L +D + Sbjct: 183 ECLSFVKELRRVRIGDFLVDEAVKSSDILEM----------DKDKLISKLERVDKALDKF 232 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMG---EIDDEGRVAPRRL 308 P +L NG ++ + ++ VRV +FIG+ E + ++ Sbjct: 233 PRFDLADNLFDKAVNGMTIKID-SKIDEEVRVY--SRNEFIGLAKSFESRGGYFLKMEKV 289 Query: 309 VVEY 312 + Sbjct: 290 FYDR 293 >UniRef50_C5RBC4 Pseudouridylate synthase n=2 Tax=Lactobacillales RepID=C5RBC4_WEIPA Length = 336 Score = 292 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 90/317 (28%), Positives = 147/317 (46%), Gaps = 21/317 (6%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 + + R ++G++ + K +GM+S+D + K++RI + GH G LDP G+LP+ LG+AT Sbjct: 27 QKSKVRSMDGIIPIYKDKGMTSHDVVFKLRRILKMKKIGHAGTLDPNVDGVLPVALGKAT 86 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEER--PVTFSAEQLAAALDTFRGDIEQ 121 K ++L ++ K Y LG T T D DG +++ + FS +++ + T G I Q Sbjct: 87 KTIEFLQETGKIYTGSITLGIATTTEDMDGDVIQTQHLVKPFSNDEINKGMRTLTGHITQ 146 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR-------HEGNELELEIHC 174 IP MYSA+K G++LY+YAR G V R R +YE Sbjct: 147 IPPMYSAVKVNGRRLYDYARAGETVERPKREAVIYEFKMTSATTFDEKKGTQTFSFLARV 206 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKGTYIRT+ DLG +L + + L R++ Y + + L+ + + + + Sbjct: 207 SKGTYIRTLAVDLGRQLQVPSVMSQLTRISAGGYDITQAHRLDEIAQRMTE--------K 258 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKN--GNPVRTSGAPLEGLVRVTEGENGKFI 292 L LMP+++ + Y V L K+ G P E +V +G+ Sbjct: 259 GSLGDWLMPLETAVAQYTHVELNDEQWEKVKHGIGQPASLHEPTTEKIVLTYKGDVKSVF 318 Query: 293 GMGEIDDEGRVAPRRLV 309 D+ + R Sbjct: 319 AW--RPDKNQYRTYRTF 333 >UniRef50_D2R7P9 tRNA pseudouridine synthase B n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7P9_9PLAN Length = 301 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 85/308 (27%), Positives = 141/308 (45%), Gaps = 23/308 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L+++KP G +S D + +V+R + GH G LDPLATG+L I +G T+ +Y+ Sbjct: 1 MDGILIVNKPAGPTSRDVVNRVQRCVKPAKVGHAGTLDPLATGVLVIGIGAGTRLVEYVQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQ-IVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y RLG +DT D G I + S + L L F G I Q P YSAL Sbjct: 61 QMPKTYVGQFRLGISSDTEDITGCCITHDESPVVSRDDLRRVLPRFLGKISQKPPAYSAL 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K +G++ Y+ AR+G V R I + L R + + EL I C GTY+R++ D+ Sbjct: 121 KVEGERAYDLARRGETVELAPREIVIRRLELTRFDYPDFELVIDCESGTYVRSLGRDIAS 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 L A + L R ++ + +ER +T++ + E + L+P+ + Sbjct: 181 ALETHAVMTDLIRTSIGSFSLERAITMDSIS-------------RETITEHLLPLLAATE 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAP-----LEGLVRVTEGENGKFIGMGEI--DDEG- 301 P V L S + G + + + + + + E+ D+G Sbjct: 228 QLPQVLLTEESVRSLQQGKRIAAPPVDLCLDTTQTVEVAAIDSRDRLVAICELTHRDDGS 287 Query: 302 -RVAPRRL 308 + P ++ Sbjct: 288 ALLKPHKV 295 >UniRef50_C2KV13 tRNA pseudouridine 55 synthase n=6 Tax=Bacteria RepID=C2KV13_9FIRM Length = 531 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 87/219 (39%), Positives = 135/219 (61%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++ ++K +GM+S D L+ ++RI + GHTG LDP+A G+L +C+G+ATK+ L+ Sbjct: 1 MDGIINVNKEKGMTSFDVLRALRRILREKKMGHTGTLDPMAEGVLLVCVGKATKYVDALM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y+ LG TDT D+ G+I+ E V+ S E + L F G EQIP MYSA K Sbjct: 61 AKEKIYQAELTLGIETDTEDSTGKILSEEEVSISKEDIEKILPRFLGKQEQIPPMYSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +GKKLYE AR+G V R+ I ++ L + ++ +L IHCSKGTYIRT+ D+GE Sbjct: 121 LEGKKLYELAREGKTVERKPSQIEIFALEILSYDCPKLRFRIHCSKGTYIRTLCKDIGEA 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 LG A + L R V ++ ++ +L + +L + ++ Sbjct: 181 LGTKACMSALLREQVGEFSLKNSFSLSEIEKLEGEGKRD 219 >UniRef50_Q1WUF2 tRNA pseudouridine synthase B n=28 Tax=Firmicutes RepID=TRUB_LACS1 Length = 302 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 158/309 (51%), Gaps = 20/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L L K +GM+SNDA+ K ++I+ + GH+G LDP G+LPIC+G+ATK YL+ Sbjct: 1 MDGILPLYKERGMTSNDAVIKCRKIFKTRKIGHSGTLDPEVDGVLPICVGKATKVVNYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDTFRGDIEQIPSMYSA 128 DS K Y+ LG T T D +G+++ + + FS E++ L +F GDI Q+P +YSA Sbjct: 61 DSGKVYKGEITLGFATTTEDLEGEVISKVKLSEPFSDEKINEILSSFIGDIIQVPPIYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFI-------RHEGNELELEIHCSKGTYIR 181 +K GKKLYEYAR G +V R + + I + E+ C KGTY+R Sbjct: 121 IKVNGKKLYEYARAGEKVDIPERRVHIEYFKQIFPSKFDKEKGQQTIYFEVGCGKGTYVR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+G+KLG A + L RL + + +L L +L + + L L Sbjct: 181 TLAVDVGKKLGVPAVMSDLTRLKSGGFQIGMAKSLSQLEKLAHENK---------LSESL 231 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE- 300 P+D D P +L L KNG + + + RV + + + + + E Sbjct: 232 YPIDYAVKDLPRYDLKLEQWRIVKNGGFLSVNTFKED-YDRVNLFYDDRIRCIYQYNKEK 290 Query: 301 GRVAPRRLV 309 R R++ Sbjct: 291 NRYQSERMI 299 >UniRef50_A7H9F6 tRNA pseudouridine synthase B n=4 Tax=Anaeromyxobacter RepID=A7H9F6_ANADF Length = 315 Score = 290 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 115/313 (36%), Positives = 158/313 (50%), Gaps = 28/313 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I GVL++DKP G +S D +Q+V+RI A RAGH G LDP ATG+L IC+G+A K QYL Sbjct: 3 IAGVLVVDKPAGPTSFDVVQRVRRILRAPRAGHAGTLDPAATGVLAICVGDAVKLQQYLS 62 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D+DK Y G TDT DA+G++VE +AE+L A L FRGDI Q+P MYSA+ Sbjct: 63 DADKAYEATVAFGAATDTEDAEGRVVERGDPSRLTAEELRAVLPRFRGDISQVPPMYSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYEL-------------LFIRHEGNELELEIHCSK 176 + G++L+E AR G V R R + V L + C K Sbjct: 123 RVGGRRLHEAARAGESVERAPRQVRVDALELLELLPLEPPQDRVEAAPVRLARFTVRCGK 182 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTY+RT+ DLG LG AH+ LRR S + E VTLE L E Sbjct: 183 GTYVRTLAADLGRALGVPAHLAALRRTEASGFRAEEAVTLEEAERL----------GREA 232 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGE 296 L L+P+ +PV+ + + +G +R AP + R +G+ + + Sbjct: 233 LLARLVPLGDALRTFPVLEVSWAEARDLAHGRALRRELAPGKAAARA---PDGRLVAVCA 289 Query: 297 IDDEGRVAPRRLV 309 D G + P R++ Sbjct: 290 AGDRG-LCPERVL 301 >UniRef50_C1F2Z6 tRNA pseudouridine synthase B n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2Z6_ACIC5 Length = 313 Score = 290 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 98/304 (32%), Positives = 153/304 (50%), Gaps = 11/304 (3%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 R +NG+L++DKP G++S+D + +V+R GH G LDP+ATG+LP+ LG+ T+ + Sbjct: 19 EARQVNGLLIVDKPGGITSHDVVARVRRATGEKSIGHLGTLDPMATGVLPLLLGKFTRLA 78 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDIEQIPSM 125 QY S+K Y R G TDT DA+GQ E RP+T S E+L A F+G IEQ+P Sbjct: 79 QYFGSSEKSYTGTIRFGFATDTYDAEGQPSSEPRPLTHSLEELRALAARFQGQIEQMPPP 138 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA K G+ Y+ AR G A P+T++E + + + S G Y+R++ Sbjct: 139 FSAKKIGGQPAYKAARAGETPQLRAVPVTIHEFVLESLAEDTAAFRMQVSAGGYVRSVAH 198 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 +LG GCGAH+ LRR A + + + L+ + L AA+ L+ + Sbjct: 199 ELGAAAGCGAHLASLRRTAAGAFTLAEALPLDEIECLA---------AAKELEARMPHPR 249 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + P V L ++ +NG V +VR+ G+ I +G P Sbjct: 250 AILPEMPAVTTDLQTAGRLRNGMQVNLPDFSTAPMVRIFVGQRD-LIAIGRRVAGTLFQP 308 Query: 306 RRLV 309 ++ Sbjct: 309 VAVL 312 >UniRef50_B7KGX7 tRNA pseudouridine synthase B n=19 Tax=Cyanobacteria RepID=TRUB_CYAP7 Length = 308 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 104/313 (33%), Positives = 153/313 (48%), Gaps = 27/313 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L+KP G +S+D + K++R+ R GH G LDP ATG+LPI +G+AT+ +L Sbjct: 8 MLGFLNLNKPGGWTSHDCVAKIRRLLKIKRVGHGGTLDPAATGVLPIAVGKATRLLPFLP 67 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y+ RLG T+T D G+I++ + EQ+ L F G+IEQIP +SA+ Sbjct: 68 E-KKAYQARIRLGVTTNTDDLQGEILQIGSANHLTLEQIDPLLRQFIGEIEQIPPAFSAI 126 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIIDD 186 GK+LYE AR+G V +R + V ++ + E ELELEI C GTYIR+I D Sbjct: 127 SQGGKRLYELARKGELVTPPSRIVHVEKINILDWYPGEHPELELEIICGGGTYIRSIARD 186 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG LG G + L R + + +TL L Q L+ Sbjct: 187 LGNLLGVGGTLANLIRTQSCGLELSKSLTLADLETQQHQGNLP-----------LIFPQL 235 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSG---APLEGLVRVTEGENGKFIGMGEI------ 297 ++L + + G + P V+V GENG F+G+GEI Sbjct: 236 ALKHLLTISLSAPEARRWCQGQSIVIINSIKLPQSQSVQVV-GENGDFLGIGEIATVNIS 294 Query: 298 -DDEGRVAPRRLV 309 D E + P+ ++ Sbjct: 295 DDREQTLIPKVVL 307 >UniRef50_Q02Z55 tRNA pseudouridine synthase B n=21 Tax=Streptococcaceae RepID=TRUB_LACLS Length = 330 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 102/336 (30%), Positives = 155/336 (46%), Gaps = 44/336 (13%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 ++NG+L + K G +S D + K++ I + GH G LDP TG+LPI +G++T+ +Y+ Sbjct: 4 NLNGILNVYKEAGWTSFDVVAKLRCILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYM 63 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT--FSAEQLAAALDTFRGDIEQIPSMYS 127 + K Y +G T+T DADG IV + PV + ++ +A+ F G I+QIP MYS Sbjct: 64 EAAGKIYEGQVTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSRFVGKIKQIPPMYS 123 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYEL---LFIRHEGNE----LELEIHCSKGTYI 180 A+K GKKLYEYAR G + R AR IT+ I E ++ CSKGTY+ Sbjct: 124 AVKINGKKLYEYARAGQTIERPAREITIKSFVRTSPIDWNKEEGLVTFSFKVECSKGTYV 183 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 RT+ DL + LG H+ L+R A + ++ + L + E+ E + L + Sbjct: 184 RTLAVDLADSLGYAGHMSKLQRTASNGLLIKDAIKLSKIEEIQESGK---------LSTI 234 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE---------------------- 278 L P + SD P VNL + G S E Sbjct: 235 LYPAEYAVSDLPRVNLTTVQFDMARVGKKFAQSDWTNEVETADSSVNKTKQQEYLLTDLS 294 Query: 279 --GLVRVTEGENGKFIGMG--EIDDEGRVAPRRLVV 310 + N K + + + EG P +++V Sbjct: 295 LLTTEKFAAFYNDKLVAVYMKHPEKEGIWKPNKVLV 330 >UniRef50_B4WM04 tRNA pseudouridine synthase B, putative n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WM04_9SYNE Length = 322 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 159/329 (48%), Gaps = 42/329 (12%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I+G + L+KP G +S+D + + +++ + GH G LDPLATG+LP+ +G AT+ QYL Sbjct: 2 IHGFINLNKPVGWTSHDCVARTRKLLGTKKIGHGGTLDPLATGVLPLAVGRATRLLQYLP 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K YR + R G T T D +G I +++ + AAL F G IEQ+P MYSA+ Sbjct: 62 EG-KAYRAVIRFGVITTTDDLEGNIAKQQDATELEEAAVDAALSQFIGKIEQVPPMYSAI 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---NELELEIHCSKGTYIRTIIDD 186 + +G++LY+ AR G V R +T+ L+ + EL ++I C GTYIR++ D Sbjct: 121 QVEGRRLYDLARAGKAVEVPKRVVTIEHLVSQSWKPGVQPELTVDIKCGAGTYIRSLARD 180 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LGE +G GA + L R S + + +TLE+L + + Q + A + Sbjct: 181 LGEAVGTGATLAGLTRTYSSGFKLTDSLTLENLEKAIAQNTFAPVSAGKA---------- 230 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRT-SGAPLEG---------LVRVTEGENGKFIGMGE 296 + LP + ++ G + +G P+ VR+ E F+G+GE Sbjct: 231 -MEHLAAITLPPDLARRWQLGQKLEITAGIPIPQPIGDHANYPPVRILEATTQTFLGIGE 289 Query: 297 IDD----------------EGRVAPRRLV 309 I + P+R+ Sbjct: 290 IRSLPFDPLPSDPLSVECATKILVPKRVF 318 >UniRef50_Q2LWU1 tRNA pseudouridine synthase B n=1 Tax=Syntrophus aciditrophicus SB RepID=TRUB_SYNAS Length = 312 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 102/321 (31%), Positives = 156/321 (48%), Gaps = 29/321 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L+LDK G +S +Q+VKRI +AGH G LDPLATG+LP+CL EATK Q+L Sbjct: 1 MDGILILDKSPGKTSQKVVQEVKRILGVRKAGHAGTLDPLATGVLPLCLNEATKLVQFLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK YR LG T+T D +G+I + R ++ AL F G I Q P YSA+K Sbjct: 61 LDDKEYRATMLLGVTTETMDIEGRITDRREPEVDEVRIREALQFFTGPISQEPPRYSAVK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 ++G+ LY +AR+G+++ R + VY + + + CSKGTYIRT+ DLGE+ Sbjct: 121 FKGRPLYSWARKGVDIALPPRTVQVYSSILEEIALPYVTFRVACSKGTYIRTLCADLGER 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + LRRL + +E V+LE + + E L ++P+ + Sbjct: 181 LGCGACMSVLRRLRCGCFTLETAVSLEDIAD---------GKGRETLLSRVIPLSDGLRN 231 Query: 251 YPVVNLPLTSSVYFKNG--------NPVRTSGAPLEGLVRVTEGENGKFIGMGE------ 296 + + S ++G +V+ G + + Sbjct: 232 VAAIEISEELSGRIRDGFQPDGSTLREYHIPSLADGDMVKFLTSSGG-LVAVARFLYASD 290 Query: 297 ---IDDEGR--VAPRRLVVEY 312 + D G+ V R+ + Sbjct: 291 QLAVSDMGQPAVRILRVFHDR 311 >UniRef50_C6HXK4 tRNA pseudouridine synthase B n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HXK4_9BACT Length = 320 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 158/304 (51%), Gaps = 17/304 (5%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 ++G+LL+DKP G +S+D + +V+++ ++ GH G LDP+A+G+LP+ +GEATK S Sbjct: 8 NPVKVSGMLLVDKPAGPTSHDIVHRVRKLTGIDKVGHGGTLDPMASGLLPLLVGEATKMS 67 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE--QLAAALDTFRGDIEQIPS 124 ++L DK Y LG TDT D+ G +V V +L F G+ Q P Sbjct: 68 SFILADDKSYEFDLTLGATTDTDDSTGVVVSTHSVPEDLSSVRLRTVARDFEGERFQQPP 127 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 MYSA+K QG LY+ AR+G+ VPRE R I +Y L I E L +HCSKGTYIR + Sbjct: 128 MYSAVKQQGVPLYKLARKGVTVPREPRRIEIYSLELIAVEPPVLTFRVHCSKGTYIRVLA 187 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 ++GE L GAH+ LRRL+V + + TL + ++ A + + LL P Sbjct: 188 REIGEALSTGAHLSRLRRLSVGTFSLAEATTLAVME--------KEWAAPDFIRNLLGP- 238 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGA-PLEGLVRVTE-----GENGKFIGMGEID 298 D P V L +S G + + EGL + + G++GK + E Sbjct: 239 DRVFDTLPGVRLLGEASTRLLKGALLPATAIFRREGLFHMKDMIRILGQDGKIRAIAEAL 298 Query: 299 DEGR 302 EG Sbjct: 299 REGE 302 >UniRef50_Q0C5Z2 tRNA pseudouridine synthase B n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C5Z2_HYPNA Length = 313 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 100/321 (31%), Positives = 151/321 (47%), Gaps = 20/321 (6%) Query: 1 MSRPR-RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M+R R R+G + G + L KP M+S A+ +KR+YNA + GH G LDPLA G+LPI L Sbjct: 1 MARQRKRKGEPVTGWINLFKPVDMTSTQAVAIIKRLYNAEKVGHGGTLDPLADGILPIAL 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 G+ATK Q+ +D+ K Y R G T + DA+ +I V + AAL + G I Sbjct: 61 GQATKTVQWAMDAHKEYVFTIRWGISTASQDAEAEITATSDVRPERAAIEAALTRYVGTI 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-EGNELELEIHCSKGT 178 +Q+P YSA+K G++ Y+ R+G EAR + V+ I + + + + KG Sbjct: 121 QQVPPKYSAIKVAGERAYDLVREGEAFELEAREVDVHAANVIGMPDADHTVIHVVSGKGF 180 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 Y+R + DL LG H+ LRR V + V++E L L E L Sbjct: 181 YVRALARDLAFDLGAEGHISQLRRTRVGAFDAPSAVSIEALEALKE--------DKPGLM 232 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKF------- 291 +L P+ + S P V + + + G V +EG E+ + Sbjct: 233 AILKPLHAVLSGMPQVQVSPHDAANIRQGRSVVLLPHVVEGWRAGRSEEDDRVALALAGD 292 Query: 292 --IGMGEIDDEGRVAPRRLVV 310 I +GE+ G+ P R+ Sbjct: 293 EAIALGEVRA-GQFEPVRVFA 312 >UniRef50_B9KZ57 tRNA pseudouridine synthase B n=2 Tax=Thermomicrobia (class) RepID=B9KZ57_THERP Length = 302 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 13/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+LL+DKP+G +S+D +Q V+ GH G LDP A G+L I +G AT+ ++ Sbjct: 1 MHGILLVDKPRGWTSHDVVQWVRTRLRVQTVGHGGTLDPAAEGLLVIAVGIATRLVRHAA 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP---VTFSAEQLAAALDTFRGDIEQIPSMYS 127 D+DK Y LG T + D +G+ + P S + +AL F G+ EQ P +YS Sbjct: 61 DADKSYVAHIVLGTGTTSDDLEGEPLAASPLSLYRPSLRDVQSALAEFLGEYEQQPPIYS 120 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 ALK G Y AR G VP + R + V L +++ +L + + C KG Y+R+ DL Sbjct: 121 ALKVGGVAAYRRARAGQPVPLKRRVVRVNSLRLVQYSYPDLIVSLDCGKGFYVRSFARDL 180 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G +LG GA++ L R V ++ + +++ L ++ + I D Sbjct: 181 GTRLGTGAYLHGLVRTRVGRFSLASAWSIDELNRVLTPSSWPLIARH---------PDEF 231 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR-VAPR 306 ++ PV+ +P + +G PVR S + G +G +IG+ D + R P Sbjct: 232 VAELPVLLVPERELRAWYHGAPVRCSASSSPGTTARAYAPDGNWIGLAHFDPQKRYWQPV 291 Query: 307 RL 308 + Sbjct: 292 LV 293 >UniRef50_C4FYS6 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYS6_ABIDE Length = 309 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 93/318 (29%), Positives = 154/318 (48%), Gaps = 29/318 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 INGV+ + K G +S DA+ ++ I + GHTG LDP A G+LP+C+G+ATK + L Sbjct: 2 INGVINVYKEVGYTSRDAVSRLTGILRQRKIGHTGTLDPAAEGVLPMCVGKATKLCELLT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-------FSAEQLAAALDTFRGDIEQIP 123 K+Y + +LG TDT D G+I E+ +AE L D F G Q P Sbjct: 62 GHKKQYIAVMKLGIATDTEDTTGEITEKTNYPENWYEENLTAENLTKITDKFIGTQFQTP 121 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIR 181 MYSA + G++LYE AR+G + R+ ITVY + + E+ + + CSKGTYIR Sbjct: 122 PMYSAKRVNGRRLYELAREGKVIERKPCEITVYGIEIKNIDIINREITVIVDCSKGTYIR 181 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 T+ D+GE LGC A + L R + +E L+ + ++V++ +D ++ Sbjct: 182 TLCKDIGEALGCKAAMKSLLRTRTGDFYLENSYKLDEIEKIVKENR---------VDEII 232 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGNPVR---------TSGAPLEGLVRVTEGENGKFI 292 +P++ + +++ + V NG V R+ ++G+F Sbjct: 233 IPIEKIFYNLRRIDVTGYAGVLLDNGGIVNMEEARLEPGFDNIKDGEKFRMY-NKDGEFK 291 Query: 293 GMGEIDDE-GRVAPRRLV 309 + ++ + ++ Sbjct: 292 AVYCYYEKINALKIDKMF 309 >UniRef50_C8WWJ2 tRNA pseudouridine synthase B n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWJ2_ALIAD Length = 302 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 101/314 (32%), Positives = 144/314 (45%), Gaps = 24/314 (7%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 + ++GVLL+DKPQGM+S+D + +V+R R GH G LDP+ATG+L IC+G T+ +Y Sbjct: 2 QALDGVLLIDKPQGMTSHDVVNRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEY 61 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYS 127 L DK Y G TDT DA+G +V + + A G+I Q P YS Sbjct: 62 LGQGDKDYSGTVVFGVGTDTDDAEGTVVAQASAAGLDLAAVRQAALRLTGEIRQRPPQYS 121 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN----ELELEIHCSKGTYIRTI 183 A+ G++ Y+ ARQG +V R + V + CSKGTY+R + Sbjct: 122 AVHIDGRRAYDLARQGKKVELPERTVRVQAFTLDEFRHEGELAVARFHVRCSKGTYVRAL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DLG +G AH+ LRRLA+ VE ++L+ PA+ L DPLL Sbjct: 182 CRDLGALVGLPAHMRSLRRLAIGSARVEDAISLDD-------WMASGDPASHLRDPLL-- 232 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSG---APLEGLVRVTEGENGKFIGMGEIDDE 300 P+ P NG V LV V + G +GE+ D Sbjct: 233 ---YLEGLPMWQPPREVLERLANGQTVEVGDLLSLSPGDLVLVIDA--GAVAAVGEVVDH 287 Query: 301 G--RVAPRRLVVEY 312 V P+++ + Sbjct: 288 QPAAVRPKKVFWKR 301 >UniRef50_P59881 tRNA pseudouridine synthase B n=15 Tax=Cyanobacteria RepID=TRUB_PROMM Length = 320 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 149/323 (46%), Gaps = 38/323 (11%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G +++DKP G++S+D + +++R++ R GH G LDP TG+LPI LG AT+ YL + Sbjct: 6 GFVVIDKPAGITSHDCVSRMRRVFGIKRVGHGGTLDPAVTGVLPIALGHATRLLPYLPGA 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR +LGQRT + D G ++ ++ + ++ A L+ FRG I+Q P SA+ Sbjct: 66 -KSYRGSIQLGQRTSSDDQQGDLISKQAWPELNTAEIEAYLEPFRGRIQQRPPQVSAVHV 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGN--ELELEIHCSKGTYIRTIIDDLGE 189 QG++ + AR+G + AR IT+ L + +++ +HCS GTYIR++ DLGE Sbjct: 125 QGERAHARARRGETMEIPARTITIDRLQLLNWNQQLGQIDFNVHCSSGTYIRSLARDLGE 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +GCGA + +L+R + ++ V L A P ++P + + Sbjct: 185 LIGCGACLGWLKRTQALGFHEQQAVPLPD-----------RDNPALTTPPAVLPPLTALA 233 Query: 250 DYPVVNLPLTSSVYFKNGNPVRT-----------------------SGAPLEGLVRVTEG 286 P + L + G + + + V Sbjct: 234 HLPRLQLNEEEQESWSCGRRITAHQDQCQPAPKPLASDQQESAPNQTDPSANKSMLVVID 293 Query: 287 ENGKFIGMGEIDDEGRVAPRRLV 309 G+ GM +D V P+ + Sbjct: 294 CRGEVAGMAYWEDNATVKPKVVF 316 >UniRef50_Q4FVL3 tRNA pseudouridine synthase B n=10 Tax=Bacteria RepID=TRUB_PSYA2 Length = 380 Score = 286 bits (733), Expect = 5e-76, Method: Composition-based stats. Identities = 109/281 (38%), Positives = 153/281 (54%), Gaps = 16/281 (5%) Query: 6 RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNA-----NRAGHTGALDPLATGMLPICLG 60 I+GV+L+DKPQGM+S + KVK ++ + +AGHTG LDP+ATG+LPICLG Sbjct: 16 PDKIKISGVILVDKPQGMTSQQVVSKVKYLFKSPNHDSKKAGHTGTLDPMATGLLPICLG 75 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDI 119 EATKFS Y LD+DK Y+ LG +TDT DADGQ+ E ++ F L F G Sbjct: 76 EATKFSHYQLDADKSYQATILLGSQTDTGDADGQVTAEATISAFDDTMLDKIAQQFLGAQ 135 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 +QIP MYSALK GKKLYEYAR GIEV R R I + + + +++L + CSKGTY Sbjct: 136 QQIPPMYSALKKDGKKLYEYARAGIEVDRPPRDIILKAIELKAIDEQQIQLTVTCSKGTY 195 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +R + +D+ + +G H+ L RL V + ++ +TL +L L + Q Sbjct: 196 VRVLAEDIAKAIGTLGHLTALSRLQVGDFKIDETITLANLEALALEQRQ----------T 245 Query: 240 LLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGL 280 L+P+D+ + L + G + L Sbjct: 246 YLLPVDACIDINAELTLSSEQCERVQMGQRLNVIDQLTNDL 286 >UniRef50_A9AV52 tRNA pseudouridine synthase B n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AV52_HERA2 Length = 291 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 158/305 (51%), Gaps = 19/305 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L +DKPQG++S D ++ VKR R GH G LDP+ATG+LPI LG AT+ +YLL Sbjct: 2 LHGFLNIDKPQGITSTDVVRVVKRNARQKRVGHGGTLDPMATGVLPIALGNATRLLEYLL 61 Query: 71 DS-DKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 + K Y RLG TD+ D +G ++ E P+ + + L FRG I Q+P Y+A Sbjct: 62 EEERKAYTATLRLGITTDSDDVEGAVIAEAPIPPLDPALIESVLSQFRGAINQVPPQYAA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 ++ GK++YEYAR+G + ARPIT+ +L + + +L + + CSKGTYIR I D+G Sbjct: 122 IRVDGKRMYEYAREGKHIELPARPITIEQLDLLAWDAQQLTIAVDCSKGTYIRAIARDIG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 LGCGAH+ LRR + + + L L + E +P + Sbjct: 182 ALLGCGAHLTALRRTRAGAFDLSNSIGLAELDQQPEVFAAALLPPQAAI----------- 230 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV-TEGENGKFIGMGEIDDEGRVAPRR 307 +++P++NL + G V+ RV + G+ + + + + G P + Sbjct: 231 ANWPLINLADAIVADVRMGRVVQVDSQAE----RVGLLDQAGQLVAIAVLREAG-YQPIK 285 Query: 308 LVVEY 312 + Sbjct: 286 VFAAE 290 >UniRef50_B1CB51 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CB51_9FIRM Length = 302 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 92/309 (29%), Positives = 156/309 (50%), Gaps = 21/309 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGV+ ++K Q M+S+D KV++I + GH+G LDP+A G++ + +G +TK S Y+ Sbjct: 2 LNGVICINKEQDMTSHDVCFKVRKILGTKKVGHSGTLDPMAEGVMGVLVGRSTKLSSYIT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y + G+ +D+ D + + F+ + ++ F GDI Q P +YSA+K Sbjct: 62 SFDKEYIAGIKFGKDSDSYDIWTDMKDVPIPDFTKKDFKKVINRFVGDITQTPPIYSAIK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-LELEIHCSKGTYIRTIIDDLGE 189 +GK LY+YA +G EV +R + + + I ++++ CSKGTYIR++I D+G Sbjct: 122 VKGKPLYKYALKGEEVEIPSREVCIDSIEIIETNLPYSAKIKVSCSKGTYIRSLIHDIGV 181 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG A + L R +E +TL +L + V+ +D ++ D + Sbjct: 182 SLGTSAVMNSLVRTKNGVLNIEDSITLSNLEDKVKSGR---------VDEVIKRDDYFLT 232 Query: 250 DYPVVNLPLTSSVYFKNGNPV-------RTSGAPLEGLVRVTEGENGKFIGMGEIDDEG- 301 D V++ +S NGN + T VR+ KFIG+G+ DE Sbjct: 233 DIHRVDVNPSSGKILLNGNGLIKKNLITPTDDIKPGTTVRLYL--EDKFIGLGKKTDEEG 290 Query: 302 -RVAPRRLV 309 + P +++ Sbjct: 291 ILIRPIKIL 299 >UniRef50_Q0EZ77 TRNA pseudouridine synthase B n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ77_9PROT Length = 307 Score = 284 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 115/314 (36%), Positives = 164/314 (52%), Gaps = 31/314 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIY-----NANRAGHTGALDPLATGMLPICLGEATKF 65 I+GV+ LDKP G +S A+ + R+Y +AGH G LDPLATGMLPI LGEAT++ Sbjct: 2 ISGVVFLDKPYGWTSRQAVNAMIRLYTQPGEKRIKAGHAGTLDPLATGMLPILLGEATRY 61 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 ++ L +DK YRV L +TDT D +G++V + + AL F G IEQ+P Sbjct: 62 AEMGLSADKSYRVSFDLSYQTDTLDCEGEVVARFDGAVNQAAVQTALAAFTGLIEQVPPA 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 YSA++ GK+ + AR+G V ARP+TV+ + + E + L++ CSKGTYIR++ Sbjct: 122 YSAIRIDGKRAHAMARKGEAVHIPARPVTVHAITLVAFEFPLVTLQVDCSKGTYIRSLAR 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+G LG G V LRRL+ +P MVTLE L+ D ++P+ Sbjct: 182 DIGAALGMGGCVTALRRLSTGGWPEAMMVTLEQLQAQP--------------DSCVLPLA 227 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRT---SGAPLEG----LVRVTEGENGKFIGMGEID 298 + P V L + F G ++ SGAP G VRV GE +G G + Sbjct: 228 QWLREMPGVTLEQDMASRFVQGQRIQLQAASGAPDPGDGQLPVRVFAGE--LLLGTGMLK 285 Query: 299 D---EGRVAPRRLV 309 + P R++ Sbjct: 286 SGHHRTVLHPSRIL 299 >UniRef50_B3CM19 tRNA pseudouridine synthase B n=5 Tax=Wolbachia RepID=TRUB_WOLPP Length = 353 Score = 284 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 151/349 (43%), Gaps = 51/349 (14%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG L LDKP GMSS A+ ++KRI+ +AGH G LDPLA+G+LPI LGEATK YL Sbjct: 2 VNGWLNLDKPTGMSSAQAVTQIKRIFGIKKAGHLGTLDPLASGILPIALGEATKTIPYLS 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y + G++T T D G I+ + Q+ A+ F G+I Q P +SA+K Sbjct: 62 CDLKAYNFTIKWGKQTTTDDLGGDIIRTSDIKPEYNQINCAIKDFIGEITQTPPQFSAVK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLG 188 +G + Y+ AR G +V + R + ++EL I + N + + C G Y+R+I DLG Sbjct: 122 IKGARAYKLARSGQKVNIKPRQVKIHELKMIFLDTINNIADFSMICGSGVYVRSIARDLG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLR---------------------------- 220 +L C H+ LRR V + + VT+E L Sbjct: 182 IELNCFGHITQLRRTMVGDFKEDESVTIEQLTKKNTTTYSPQCLTLDTNTYKSCNGQKIL 241 Query: 221 -ELVEQAEQQDIPAAELLDP------------------LLMPMDSPASDYPVVNLPLTSS 261 V+ + +I +LD ++P++S V + L + Sbjct: 242 GAYVKNNVRDEIGLIPVLDTGMTSEGGMTEDDGGNTKGFIIPIESALKSMFKVEISLEEA 301 Query: 262 VYFKNGNPVRTSGAPLEGLVRVTEGENGKF-IGMGEIDDEGRVAPRRLV 309 + G + + + G I + G V P R+ Sbjct: 302 EKIRKGQEIILNNLRNLKNYDIFCTIVGNVPIAICSFT-HGYVKPIRVF 349 >UniRef50_Q5PAY2 tRNA pseudouridine synthase B n=10 Tax=Anaplasmataceae RepID=TRUB_ANAMM Length = 306 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 98/307 (31%), Positives = 153/307 (49%), Gaps = 21/307 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L +DKP MSS + +VK+I+N + GH G LDPLATG+LP+ +GEATK Y +D Sbjct: 9 GWLNVDKPLHMSSGSVVGRVKKIFNC-KVGHAGTLDPLATGVLPVAVGEATKTIPYAVDG 67 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y V + G + T DA+G+I++ + SA+ + AL F G+I Q+P +SA++ + Sbjct: 68 LKSYAVTVQWGSQRSTDDAEGEIIKTSSLRPSADSIREALGQFVGNIRQVPPAFSAVRVR 127 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFI--RHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G + Y AR+G V + + + + + E N + I C KG YIR+ DLG Sbjct: 128 GVRAYRLARRGEAVSLPPKEVCIVSIDLLSADEESNTADFLIVCKKGVYIRSFARDLGAS 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC +V +LRR +V + E VTL+ L L + A++L+ L+P+ D Sbjct: 188 LGCFGYVSFLRRKSVGPFSEENSVTLDRLEALAD---------ADVLNEALLPISYVMGD 238 Query: 251 -YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE-------NGKFIGMGEIDDEGR 302 +++ + K G V L GL + G + + ++ G Sbjct: 239 ALLRLHVDAEVAEIVKKGQSVSLQRTSLNGLYAAENYDMCYLSRVGGVPVAVCKVV-NGT 297 Query: 303 VAPRRLV 309 P R+ Sbjct: 298 ARPVRVF 304 >UniRef50_Q8R5X8 tRNA pseudouridine synthase B n=16 Tax=Fusobacterium RepID=TRUB_FUSNN Length = 287 Score = 282 bits (723), Expect = 8e-75, Method: Composition-based stats. Identities = 98/295 (33%), Positives = 159/295 (53%), Gaps = 14/295 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G+++++KP+G++S D ++K+K+ + GHTG LDPLA G++ +C+G+ATK + L Sbjct: 1 MEGIIVINKPKGITSFDVIRKLKKFLKTKKIGHTGTLDPLAIGVMLVCVGKATKLASDLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK Y +G TDT D +G+ + E + S E L +L F G+I+Q+P MYSA+K Sbjct: 61 AKDKVYIADFDIGYATDTYDIEGKKIAENIIEVSKENLEQSLKKFIGNIKQVPPMYSAIK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G KLY AR+GIEV R R IT+ + + + N+ ++E SKG YIR++I D+G+ Sbjct: 121 IDGNKLYHLARKGIEVERPERDITIEYINLLDFKDNKAKIETKVSKGCYIRSLIYDIGQD 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LG A + L+R V +Y +E +LE + E+ + + E + Sbjct: 181 LGTYATMTALQRKQVGEYSLENSYSLEQIEEMTLNNNFKFLKTIEEI-----------FS 229 Query: 251 YPVVNL-PLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 Y NL + +KNGN V+ R+ +FIG+ I++ + Sbjct: 230 YDKYNLQTEKEFILYKNGNTVKIKENLENKKYRIYF--QDEFIGLANIENNNLLK 282 >UniRef50_B5YEH8 tRNA pseudouridine synthase B n=2 Tax=Dictyoglomus RepID=B5YEH8_DICT6 Length = 293 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 86/304 (28%), Positives = 141/304 (46%), Gaps = 21/304 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG LL++KP G++S + +++VK++ + GH G LDP A G+L I LG+ + +YLL Sbjct: 1 MNGFLLINKPPGITSFEVVRRVKKLSKEKKVGHMGTLDPRACGLLIIGLGKYVRLEEYLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQ--IVEERPVTFSAEQLAAALDT-FRGDIEQIPSMYS 127 K Y V G +DT D + ++ + E L L F G+IEQ P YS Sbjct: 61 KLPKTYIVEVLFGVSSDTYDRESYRFFYDKEEKPVNTEILEETLKKYFTGEIEQTPPPYS 120 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG--NELELEIHCSKGTYIRTIID 185 A+ +G++ Y AR+ I V R +T+YE + + N + S GTYIR+++ Sbjct: 121 AVHIEGERAYNLARKNISVSLPKRKVTIYESEILNFDKTRNTALIRFKVSSGTYIRSLVH 180 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 D+GEKL V +L R + V + ++E + LL P++ Sbjct: 181 DIGEKLNTKTLVSFLVRTDIGHLSVNDSIPYNKIKEGIT-------------KKLLSPLE 227 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 D+PV NGN + + +E G+FI +G++ + P Sbjct: 228 --VLDFPVYKTSEEEEKKILNGNAIEARLSTIESPYISIINSQGRFIAVGKVSGN-IIKP 284 Query: 306 RRLV 309 ++ Sbjct: 285 DKVF 288 >UniRef50_B8DW45 tRNA pseudouridine synthase B n=5 Tax=Bifidobacterium RepID=B8DW45_BIFA0 Length = 350 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 101/345 (29%), Positives = 157/345 (45%), Gaps = 36/345 (10%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +R + +NGVL++DKPQG++S+D + V+ + + GH G LDP+ATG L I +G Sbjct: 1 MGTGKRDAK-VNGVLIVDKPQGVTSHDIVAAVRAALHTRKVGHAGTLDPMATGALVIGVG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVE---ERPVTFSAEQLAAALD-TFR 116 AT+ QY+++ K Y R GQRT T DADG+ VE E V + EQ+ A+ + Sbjct: 60 HATRLLQYIVEHTKTYSATIRFGQRTTTDDADGEFVEREAEAAVLPTLEQVREAVANEYT 119 Query: 117 GDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---------E 167 GDIEQIP+ SA+K G++ Y+ AR+G V +AR +TV+ + + Sbjct: 120 GDIEQIPNAVSAIKVNGQRAYDLAREGRHVELKARRVTVHAFDVLGGRQTQAANGTPVLD 179 Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTL----------- 216 +++ + CS GTYIR + DLG CGAH+ LRR AV + V + Sbjct: 180 VDVRVTCSAGTYIRALARDLGNDFHCGAHLTRLRREAVGAFRVRDARIVRAHAEARTFVN 239 Query: 217 EHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP 276 E+ D +L LL + + PV+ + + + G + Sbjct: 240 RDGEEITRNRAVLDCVGEDLAGHLLTMVQAAQLTLPVLAVSEAQAADLRFGRRIVAQAPT 299 Query: 277 LEGLVRVTEGE-----------NGKFIGMGEIDDEGRVAPRRLVV 310 + GE + + + E P + Sbjct: 300 DDERPAHHHGEHVWAAIGSADGEPEVVAIVERAKHHEFKPVTVFA 344 >UniRef50_B3CTX3 tRNA pseudouridine 55 synthase n=2 Tax=Orientia tsutsugamushi RepID=B3CTX3_ORITI Length = 302 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 88/305 (28%), Positives = 139/305 (45%), Gaps = 12/305 (3%) Query: 8 GRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQ 67 ING + L KP G+SS A+ K+K N ++ GH G LD A G+LPI +GEATK Q Sbjct: 2 KSKINGWINLYKPAGISSAQAVAKIKHWLNLSKVGHAGTLDVEAEGVLPIAIGEATKLVQ 61 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYS 127 YL+++ K Y + G +TD+ D G++V+ + ++ + F G+I Q+P YS Sbjct: 62 YLMEATKEYHFTMKFGAKTDSGDVSGKVVQVTSNIPTYDECLSVTKKFIGEIVQVPPSYS 121 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELE--IHCSKGTYIRTIID 185 ALK G + Y AR G +V R + ++ L ++ L CSKGTYIRT+ Sbjct: 122 ALKINGIRAYNLARSGHKVILSPRKVKIFSLKLESYDSINLTATYSTECSKGTYIRTLSQ 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVER-MVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 D+ L + V+ L R V + + + L L L +M Sbjct: 182 DIALCLQSLSFVVKLARTRVGCFNYKHGSLYLNALNSF------SFAKTIACLKDGIMDT 235 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 S+ P +++ + G V+ LV N + I +G+++D G Sbjct: 236 KCVLSNIPSLSIDDVVARKIYFGQLVQLPRLHNCSLV--WLQYNNQLIAIGKMED-GYFR 292 Query: 305 PRRLV 309 ++ Sbjct: 293 SSKVF 297 >UniRef50_Q9Z5I4 tRNA pseudouridine synthase B n=3 Tax=Mycobacterium RepID=TRUB_MYCLE Length = 320 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 97/311 (31%), Positives = 165/311 (53%), Gaps = 30/311 (9%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP GM+S+D + + +RI+ R GH G LDP+ATG+L + + ATK L + Sbjct: 13 GIVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGA 72 Query: 73 DKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y RLGQ T T DA+G++++ + E +A A+ RGDI+Q+PS SA+K Sbjct: 73 SKEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRH---------EGNELELEIHCSKGTYIRT 182 G++ Y R+G V +ARP+ + + + +L++E+ CS GTYIR Sbjct: 133 DGRRAYRLVREGHVVELQARPVRIDRFEVLAVRPGPEVGLADVIDLDVEVECSSGTYIRA 192 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + DLG+ G G H+ LRR V ++ +++ +LE L EL + D Sbjct: 193 LARDLGDAFGVGGHLTSLRRTRVGRFELDQAWSLEDLAELPRLSRTLD------------ 240 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 ++ +P +L ++ NG P+ ++G +G+ ++ +G+ I + + DEG Sbjct: 241 --ETCLLMFPRRDLTVSEVEATSNGRPISSAGI--DGIYAASDA-DGRVIAL--LRDEGP 293 Query: 303 VAPRRLVVEYP 313 + +VV +P Sbjct: 294 -RTKSVVVLHP 303 >UniRef50_Q7MBB8 tRNA pseudouridine synthase B n=3 Tax=Cyanobacteria RepID=TRUB_GLOVI Length = 292 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 90/304 (29%), Positives = 147/304 (48%), Gaps = 20/304 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L LDKP G++S+D + +++R+ R GH G LDP ATG+LP+ +G AT+ ++L Sbjct: 1 MEGFLNLDKPAGLTSHDCIARLRRVLGERRIGHGGTLDPAATGVLPVAVGRATRLLRFLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K YR R G TDT D +G I+ + ++ L FRG I Q+P YSA+ Sbjct: 61 EG-KVYRATVRFGLSTDTDDLEGNILADAGAADLDLGRVQVHLQAFRGTISQVPPRYSAI 119 Query: 130 KYQGKKLYEYARQGIEV-PREARPITVYELLFIRH---EGNELELEIHCSKGTYIRTIID 185 +G++LY+ AR+G+ + R + + L + EL++EI CS GTYIR+I Sbjct: 120 HQEGERLYDLARRGVAIAEIAPRTVEIQALTVLDWYPGHYPELQIEIACSTGTYIRSIAR 179 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DLG LG GA + L R + +E + L + + L+ Sbjct: 180 DLGTALGTGATLARLLRTRSGPFALEASLPLAAVEAGFQAGTVP-----------LIGPR 228 Query: 246 SPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + V+L + + G V G ++ E E +F+G+ + G + P Sbjct: 229 TALAHLAAVHLEPPLAARWLMGQRV--PGDCEGAFAQIWECETDRFLGVAACEA-GSLQP 285 Query: 306 RRLV 309 ++ Sbjct: 286 LVVL 289 >UniRef50_Q3ABA1 tRNA pseudouridine synthase B n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=TRUB_CARHZ Length = 288 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 144/306 (47%), Gaps = 29/306 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + L KP GM+S+D + V++ + GH G LDP A G+LP+ +G+AT+ +YL Sbjct: 1 MDGFINLLKPPGMTSHDVVAYVRKKLKTGKVGHLGTLDPAAAGVLPVAVGQATRLIEYLE 60 Query: 71 D-SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 + + K Y G T T D +G+I+E++ + +A + L F G+IEQ P + SA Sbjct: 61 NVAMKEYLAEIVFGITTATWDMEGEILEQKDASFLTAGDIEKVLGHFHGEIEQTPPLASA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTII 184 +K GK LY Y RQG +V R + + + + + L I CS+GTYIR+I Sbjct: 121 VKVSGKPLYRYQRQGEKVEPPKRKVFIDSIELLEFLADKPQPAVRLYIRCSRGTYIRSIA 180 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +++G L GA + +L R + ++ L D L+P Sbjct: 181 NEIGNLLKTGATLKFLLRTRSGPFLLDDSNLLHE-------------------DFTLIPP 221 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-GLVRVTEGENGKFIGMGEIDDEGRV 303 + D+P +NL + KNG V+ G V GE K I G I + Sbjct: 222 EQLFQDFPKINLTREQYLRVKNGGGVKVETKGENFGPVFAYYGE--KIIATGMICGQ-IF 278 Query: 304 APRRLV 309 P ++ Sbjct: 279 RPEKVF 284 >UniRef50_C9LRE6 tRNA pseudouridine synthase B n=1 Tax=Dialister invisus DSM 15470 RepID=C9LRE6_9FIRM Length = 283 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 90/299 (30%), Positives = 144/299 (48%), Gaps = 17/299 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVL + KP GM+S D + ++RIY + GH G LDP+A G+LP+ LG + + +Y Sbjct: 1 MDGVLNVLKPAGMTSFDVIACLRRIYGQKKIGHGGTLDPMAAGVLPVFLGRSARLIEYAP 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y +G TDT D G+I++ V F G IEQIPS YSA+ Sbjct: 61 IHRKTYEAEFVMGLATDTEDMTGRIIKTGKVCSDISLWERVASKFTGIIEQIPSSYSAIM 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GK+ Y+ AR G +V +R + VY L + + L + CS GTY+R + DLG K Sbjct: 121 VDGKRAYQLARNGKQVILPSRKVEVYHLQIREIQSPYIRLSVTCSAGTYVRALGRDLGNK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 +G + +L R + + + + TLE + + L+ + S+ Sbjct: 181 MGVPLAMSFLLRTKMGVFSIGQAKTLEEIERNPKDC-------------LMTDISLLLSN 227 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 V+L ++ F G +RT+ +E V E +F+G I + G + P+++ Sbjct: 228 LENVSLSEDAAKDFLQGKRLRTALPDME--VTAVFQEE-RFLGTAFI-ENGVLHPKKVF 282 >UniRef50_Q493T5 tRNA pseudouridine synthase B n=2 Tax=Candidatus Blochmannia RepID=TRUB_BLOPB Length = 260 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 126/256 (49%), Positives = 170/256 (66%), Gaps = 1/256 (0%) Query: 1 MSRPR-RRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICL 59 M R + R RDING+LLLDKP+G+SS L K+K+++NA + GHTG LDPLATGMLP+C Sbjct: 1 MKRYKNVRNRDINGILLLDKPKGISSGLFLNKIKKLFNAKKIGHTGTLDPLATGMLPVCF 60 Query: 60 GEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDI 119 G+ATK ++YLL SDKRY+V A+LG TDT D+DG I+ PV + L L++F G Sbjct: 61 GKATKLAKYLLHSDKRYKVSAQLGVSTDTFDSDGTIISVSPVQSNDYILEQCLESFIGIR 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 QIP M+S+LKY+G LY+YAR+GI PR+ R I +Y L I+ N +EL++HCS GTY Sbjct: 121 NQIPPMFSSLKYRGVPLYKYARKGIYFPRKPRSIHIYNLSLIKKTENIIELDVHCSTGTY 180 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 IR+I++D+GE LGCGAHVI LRRL+V +Y M+ L + D+ LD Sbjct: 181 IRSIVNDIGEYLGCGAHVIELRRLSVGQYISSSMINPATLEAIFYNDSFDDVQVFCKLDA 240 Query: 240 LLMPMDSPASDYPVVN 255 L PM+ + ++ Sbjct: 241 FLTPMNMIMLELANIS 256 >UniRef50_B9Y7W5 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y7W5_9FIRM Length = 291 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 149/295 (50%), Gaps = 20/295 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+ L++KP GM+S D + +V++ GHTG LDP ATG+L + LG A K YL Sbjct: 10 VDGICLINKPAGMTSFDVVYQVRKAAGIKSVGHTGTLDPQATGVLVVLLGRACKALPYLS 69 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG +TDT D G+ +E RP + Q+ A L++F G Q+P M SA+ Sbjct: 70 GKTKEYIAELTLGTKTDTGDIWGKPLETRPAIKLEPGQIKAVLNSFLGVSMQLPPMVSAI 129 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G+KLYEYAR+G+EV RE RP+ + E+ ++ + + CS GTY+RT+ +D+ E Sbjct: 130 KKDGRKLYEYAREGVEVEREKRPVEIIEIELLQVAS-SIRFRVVCSNGTYVRTLCEDIAE 188 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLG + L R Y +++ L+ +++ L+ D AS Sbjct: 189 KLGTVGTMSSLIRTRACGYTLDQCQPLDEVKQGH--------------FQLVSIYDGIAS 234 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 YP++ KNG +R E +V V + + M E ++G Sbjct: 235 QYPLIEANPAQIPDIKNGKRLRLD--STEPVVGVV--SENQVLAMMERQEDGIYR 285 >UniRef50_A1WLI1 tRNA pseudouridine synthase B n=103 Tax=cellular organisms RepID=TRUB_VEREI Length = 331 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 126/315 (40%), Positives = 171/315 (54%), Gaps = 19/315 (6%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 SR R + R ++GVLLLDKP +SSN ALQK K + A +AGHTG LDPLATG+LP+C G Sbjct: 5 SRTRVQRRPVHGVLLLDKPLALSSNQALQKAKWLLRAEKAGHTGTLDPLATGVLPLCFGA 64 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF---SAEQLAAALDTFRGD 118 ATKFSQ LD+ K Y IA G T T DA+G +++ V + E+L+A F G Sbjct: 65 ATKFSQLQLDAPKTYEAIALPGVTTSTGDAEGAVLQRCAVDPAQLAPERLSAVQRQFTGP 124 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF----IRHEGNELELEIHC 174 I Q+P M+SALK G+ LY YAR GI + R AR + ++ L +++ + C Sbjct: 125 ISQLPPMHSALKKDGRALYTYARAGIALERAARAVVIHALELSLVQHAPAQTAIKIAVTC 184 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAA 234 SKG YIRT+ +D+G LGCGAH+ LRR +ER ++LE L+ L E Sbjct: 185 SKGCYIRTLAEDIGAALGCGAHLSALRRTDSGGIGIERCISLERLQALPEAERL------ 238 Query: 235 ELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGM 294 L P S + + V L ++ F +G P R P V V + +G+ Sbjct: 239 ----ACLQPPQSLLTRHLRVTLDSDNAARFLSGLP-RRGAWPDAPAVAVFGADPPALLGV 293 Query: 295 GEIDDEGRVAPRRLV 309 G I G + P RL+ Sbjct: 294 GHIAG-GCLLPDRLL 307 >UniRef50_D1AS76 tRNA pseudouridine synthase B n=1 Tax=Anaplasma centrale str. Israel RepID=D1AS76_ANACI Length = 308 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 96/306 (31%), Positives = 148/306 (48%), Gaps = 20/306 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L +DKP MSS + ++++I+N + GH G LDPLATG+LPI +GEATK QY +D Sbjct: 12 GWLNIDKPLYMSSGGVVGRIRKIFNC-KVGHAGTLDPLATGVLPIAVGEATKTVQYAVDG 70 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y + G + T DA+G+++ + SA + AL F GDI+Q+P +SA++ Q Sbjct: 71 LKSYVAAVQWGAQRSTDDAEGEVIGTSSLRPSASSIREALGQFVGDIQQVPPAFSAVRVQ 130 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGEK 190 G + Y AR+G V + + + + + + + I C +G YIR+ DLG Sbjct: 131 GVRAYNLARKGKAVSLAPKSVCIVSVDLLSVDEEKNVANFLIVCRRGVYIRSFARDLGIS 190 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGC +V LRR +V + E +TLE L EL A LD +L+P+ Sbjct: 191 LGCLGYVSSLRRKSVGPFLEEDSITLERLEELAS---------ANALDGVLLPISHVMGA 241 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE-------NGKFIGMGEIDDEGRV 303 + + + + G V L GL V + G + + ++ G Sbjct: 242 TLKLCVDAEVAEIVRKGQSVSLQHTSLNGLYAVENYDMCYLSQVGGVPVAICKVV-NGTA 300 Query: 304 APRRLV 309 P R+ Sbjct: 301 RPVRVF 306 >UniRef50_Q8D2X8 tRNA pseudouridine synthase B n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=TRUB_WIGBR Length = 327 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 119/302 (39%), Positives = 185/302 (61%), Gaps = 6/302 (1%) Query: 9 RDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQY 68 R+ING+LLLDKP G+SSN LQK+K+++ A +AG+ G LDP+A+GMLPI G+ATKFS Y Sbjct: 30 RNINGILLLDKPIGLSSNLILQKIKKLFKAKKAGYIGTLDPIASGMLPIFFGDATKFSDY 89 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 LL+++K Y++ A+LG++T+T D+ G+I+ RP+ + L F+G+I Q P M+S Sbjct: 90 LLNTNKWYKIKAKLGEKTNTLDSFGKIICIRPILNIKKLNIEKILSEFQGEIYQKPPMFS 149 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 +LK+ GK LY+YARQGI +PRE R + V+ + + L I CSKGTY+R+I+DD+ Sbjct: 150 SLKHLGKPLYKYARQGIYIPREKRKVYVHYIKLLSFSKKYFSLTIKCSKGTYVRSIVDDI 209 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 GEKL CGAH++ LRR + Y M+ L + ++ + LD L+P++S Sbjct: 210 GEKLFCGAHIVKLRRTKLFNYKESHMIDSNKLYNIKKK-----FNDLKKLDECLLPIESI 264 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P++ + +NG + L ++ + KF+G+ +I+ GR + Sbjct: 265 FKKLPIIVVNDDIINRLRNGIKLNFWKIKKNNLFKIISKDTKKFVGIIDINKYGRANSIK 324 Query: 308 LV 309 L+ Sbjct: 325 LI 326 >UniRef50_A8SMZ3 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMZ3_9FIRM Length = 298 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 100/304 (32%), Positives = 150/304 (49%), Gaps = 18/304 (5%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 + NG+L + KP+G +S D + V++IY + GH G LDP ATG+LPI +G ATK +Y+ Sbjct: 2 NFNGILNVYKPKGFTSRDVVNIVRKIYKTKKIGHAGTLDPNATGVLPIAIGNATKIVEYI 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RGDIEQIPSMYSA 128 K Y LG TDT D G + + V Q + + I QIP MYSA Sbjct: 62 QSMGKCYVGEMTLGIETDTLDIWGGSLNSKEVYLDKNQFFEVIKEYDNKKISQIPPMYSA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LK GK+LYEYAR GIEV RE R +Y L+ + N++ E++CSKGTYIR++ +D+ Sbjct: 122 LKKNGKRLYEYARLGIEVEREKREAEIYSLIILNFYDNKIRFEVNCSKGTYIRSLFNDIA 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 A++ L R + +E +LE L+ E L LM ++ Sbjct: 182 SDTDNFAYMSSLCRSKYGIFKIENAFSLERLKNFNEN----------QLYNSLMKIEDVF 231 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE---GRVAP 305 +Y ++ + NG +T EG+ ++ + FIG+GE+ E + Sbjct: 232 -EYERIDFDKKYFKHISNGLR-KTFDIEKEGIFKIYC--DNIFIGIGELVSEESGKLLKM 287 Query: 306 RRLV 309 + Sbjct: 288 INIF 291 >UniRef50_A0LHM2 tRNA pseudouridine synthase B n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=TRUB_SYNFM Length = 306 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 104/298 (34%), Positives = 155/298 (52%), Gaps = 21/298 (7%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 R ++ +G+L+LDKP+GM+S+ + +VKR+ +AGH G LDP ATG+L +C+ +AT+F+ Sbjct: 2 REKEPSGLLVLDKPEGMTSSTLVTRVKRLLGLRKAGHCGTLDPFATGVLLVCVNQATRFA 61 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERP-VTFSAEQLAAALDTFRGDIEQIPSM 125 + L K YR ARLG TDT D G +V R V S +L A+ G Q Sbjct: 62 EQLTGQTKVYRFTARLGIETDTLDRTGTVVRTRDDVVPSERELLEAVRLHEGTQVQEVPR 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 Y+A+K QGK+LYE AR+GI+V R + ++ I + E+ LE CSKGTY+R + Sbjct: 122 YAAVKVQGKRLYELARKGIDVELPRREVHIHRFDLISYRYPEVVLETKCSKGTYVRQLAA 181 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMD 245 DLG +LGCGAHV++LRRLA + +ER +LE + + L+PM Sbjct: 182 DLGRRLGCGAHVMHLRRLACGPFGLERASSLEQMHDGASDGSWL---------AKLVPMA 232 Query: 246 SPASDYPVVNLPLTSS-VYFKNGNPVRTSGAPLE--------GLVRVTEGENGKFIGM 294 S P + + + G + G VR+ +G+ + Sbjct: 233 DALSHLPALTIEDGQVLSRLRYGQ-LDADWEAEHSGRFSRRVGPVRIVTA-DGRLAAL 288 >UniRef50_A6LLV6 tRNA pseudouridine synthase B n=1 Tax=Thermosipho melanesiensis BI429 RepID=TRUB_THEM4 Length = 304 Score = 279 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 91/303 (30%), Positives = 142/303 (46%), Gaps = 19/303 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L KP+G++S+D + +V+R N R GH G LDP A G+L + +G T+ +YL Sbjct: 1 MMGFLNLYKPKGVTSHDVVDEVRRKLNIRRVGHAGTLDPFAEGVLVVGVGSTTRLLEYLQ 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 KRY V A LG T+T D G+IVEER E++ + +F G +Q+P YSA K Sbjct: 61 VERKRYYVKALLGVITETFDITGEIVEERECNIPDERIIDVVKSFVGKYKQVPPAYSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 Y+G++LY+ AR+G + + +Y + I + E+ SKGTYIR++ D+G K Sbjct: 121 YKGERLYKLAREGKIISLPPVDVEIYGIDKIIVKKPHFSFEVEVSKGTYIRSLCMDIGYK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA L+RL+V + + + + E L L+ + Sbjct: 181 LGCGATAKELKRLSVGTFDIRDAINPFEV-------------GREKLLESLIDVQKVLP- 226 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPL-----EGLVRVTEGENGKFIGMGEIDDEGRVAP 305 P V + NGN V NG+ + + + + + Sbjct: 227 LPKVEIYKDFVENIYNGNQPTLDFVKEMVDSFSKDDDVMLICNGQLVAIAKAERNSKFLE 286 Query: 306 RRL 308 + L Sbjct: 287 KNL 289 >UniRef50_Q30WI7 tRNA pseudouridine synthase B n=4 Tax=Desulfovibrionaceae RepID=TRUB_DESDG Length = 309 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 89/293 (30%), Positives = 141/293 (48%), Gaps = 20/293 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVL+L+KP+G +S + ++KR + GH G LDP+A G+L + LG+ TK S YL++ Sbjct: 10 HGVLVLNKPKGPTSAHCIARIKR-LGQKKIGHAGTLDPMAQGVLLVLLGQCTKISGYLME 68 Query: 72 SD-KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y LG+ TDT D +G+ + + E + A+D + G EQ YSA Sbjct: 69 GGEKIYSGTLELGRTTDTWDDEGETLSTADWTHVTEEDVVRAVDLWTGSSEQQVPAYSAA 128 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K++G+ LY+ AR+G E P + R I + + + E + +HCS GTYIR++ LG Sbjct: 129 KHKGQPLYKLAREGKETPVKTRRIEISQAETLAVELPFVRFRVHCSSGTYIRSLAHSLGN 188 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LGCGA + L R + ++ L+ + + L ++P+D Sbjct: 189 RLGCGAVLTELIREYSHPFSLDEAHDLDDV-----------LAEPAELAGRVIPLDKALP 237 Query: 250 DYPVVNLPLTSSVYFKNGNP------VRTSGAPLEGLVRVTEGENGKFIGMGE 296 +P + L KNG P S EG+ V G + + E Sbjct: 238 HWPKLRLSAADEARVKNGMPHPYDPAEMASMPFTEGIRAVLLDPAGDPLALAE 290 >UniRef50_Q04ED7 tRNA pseudouridine synthase B n=1 Tax=Oenococcus oeni PSU-1 RepID=TRUB_OENOB Length = 298 Score = 279 bits (714), Expect = 9e-74, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 159/308 (51%), Gaps = 25/308 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG++L+DKP G++S D + K+++I+ + GHTG LDP TG+L I LG+ATK YL + Sbjct: 3 NGIVLVDKPAGLTSFDVVAKLRKIFQQKQVGHTGTLDPSVTGLLVIVLGKATKLIDYLQE 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQL--AAALDTFRGDIEQIPSMYSAL 129 + K+YR LG +TDT D DGQ+ E + + + AA D+F G +Q+P MYSA+ Sbjct: 63 NQKQYRGTLILGLKTDTQDMDGQVTEMQFLKEAIADFKKKAAFDSFLGSSDQLPPMYSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE-------LEIHCSKGTYIRT 182 K GK LYE AR+G + R++R I V E + + SKGTYIRT Sbjct: 123 KVGGKHLYELARKGETIERKSRKIKVMEFQQVGGSKFDASKGQEYINFVATVSKGTYIRT 182 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 +I+D G KLG A ++ LRR+ Y V+ + LE + ++ ++ Sbjct: 183 LIEDFGAKLGLPATMMRLRRIEADGYDVKNSINLEEILA------------SKTPRKFII 230 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 PM+ P ++ KNG ++ + V++ N F + E D G Sbjct: 231 PMEKLLPTLPKYSVGSDDWQLIKNGGWLKELPISV-SPVKIFY--NNSFQAIYEKQD-GF 286 Query: 303 VAPRRLVV 310 P+++++ Sbjct: 287 YKPKKMLI 294 >UniRef50_D2Q8K5 TruB tRNA pseudouridine synthase B n=6 Tax=Bifidobacterium RepID=D2Q8K5_9BIFI Length = 362 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 99/356 (27%), Positives = 157/356 (44%), Gaps = 54/356 (15%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 + +I+G+L++DKPQG++S+D + ++ + R GH G LDP+ATG+L I G AT+ Sbjct: 4 KKPEISGLLVVDKPQGVTSHDVVAAIRGALHMKRVGHAGTLDPMATGVLVIGFGNATRLL 63 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVE----ERPVTFSAEQLAAAL-DTFRGDIEQ 121 Y++D K Y RLGQRT T DADG+++E S E + + + F G IEQ Sbjct: 64 NYIVDHSKTYLATIRLGQRTATDDADGELLEPSAPIAEAFPSRETVERVIAERFTGRIEQ 123 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELE---------- 171 +P+ YSA+K G++ Y+ AR+G +V +ARP+TV E Sbjct: 124 VPNSYSAIKINGQRAYDLAREGKQVELKARPVTVEEFRVDAVRYGYASTRFADAPLTDAQ 183 Query: 172 --------------------------IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAV 205 + CS GTYIR + DLGE LG G ++ LRR+ + Sbjct: 184 DIGAGERWHPVSAAPDVRPVMELDVAVSCSAGTYIRALGRDLGEALGLGGYLTMLRRIRI 243 Query: 206 SKYPVE--RMVTLEHLRELVEQAEQQDI--------PAAELLDPLLMPMDSPASDYPVVN 255 + +VT + E ++ A L D L +DS + P++ Sbjct: 244 GDFTETMPNIVTAHTESKTFTNREGAEVTRNRAVIDDAEHLTDRALGMVDSAKASMPMLR 303 Query: 256 LPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVE 311 + + + G + + E G + + E G P + V+ Sbjct: 304 ISDQEATDLRFGRRIAHD---IRETTAAYVPETGDLVAIIERAKRGEAKPVAVFVQ 356 >UniRef50_D1BM63 tRNA pseudouridine synthase B n=3 Tax=Veillonella RepID=D1BM63_VEIPT Length = 313 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 90/328 (27%), Positives = 138/328 (42%), Gaps = 43/328 (13%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L KP G++S+DA+ +RI R GH+G LDP+A G+LP+ LG+AT+ +Y Sbjct: 1 MDGILPFLKPPGITSHDAVAICRRILKEKRIGHSGTLDPMAYGVLPVFLGKATRLIEYTE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQI-----------------------VEERPVTFSAEQ 107 D DK Y +LG TDT D+ GQ + V S E+ Sbjct: 61 DFDKTYVAECKLGTFTDTEDSSGQTVLPDTNMVLRDGVVLNQAIQSTEISATMVKPSFEE 120 Query: 108 LAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE 167 L + L F G +Q PS YSA+K G + YEYAR+GI V R I + + I + Sbjct: 121 LVSILKKFAGIQDQRPSKYSAIKVNGIRAYEYARKGIPVELPLRQIHIKNIELIAYGFPF 180 Query: 168 LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAE 227 + + C+ GTYIR+++ D+ LG + L R V + + E + Sbjct: 181 FTVRVTCTGGTYIRSLLRDICIALGIPGTMTSLARTQVGPFDIGSAKMAEEIM------- 233 Query: 228 QQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT----SGAPLEGLVRV 283 LL+P D+ S V + G + S + R Sbjct: 234 -------LHGKSLLLPTDAAVSHLSKVTVNSVQLRMMVQGKELPIEREFSFTEPDNFYRA 286 Query: 284 TEGENGKFIGMGEIDDEGRVAPRRLVVE 311 FIG+ + + + +E Sbjct: 287 YGPLG--FIGIMRRTNHSLKVEKNIFIE 312 >UniRef50_Q2G5F3 tRNA pseudouridine synthase B n=8 Tax=Sphingomonadales RepID=TRUB_NOVAD Length = 304 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 95/308 (30%), Positives = 146/308 (47%), Gaps = 25/308 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKF 65 ++G ++LDKP + S + VKR + GH G LDPLATG+LPI +GEATK Sbjct: 2 VDGWIILDKPLELGSTQGVAAVKRNLRQAGYGKCKVGHGGTLDPLATGVLPIAVGEATKL 61 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 +LD+ K Y G TD+ D +G IV V + L FR I+Q+P Sbjct: 62 CGRMLDASKVYAFTVAFGTETDSLDLEGGIVATSDVRPPLADVHVTLGAFRDSIDQVPPA 121 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-----LELEIHCSKGTYI 180 YSAL +G++ Y+ AR G V +R +T++ L G+E L H SKGTYI Sbjct: 122 YSALMVEGRRAYDLARAGETVELPSRRVTIHALTLDSWTGSEGAVETATLTAHVSKGTYI 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R++ D+ LG HV LRRL + +E+ ++L+ L L + A L+ + Sbjct: 182 RSLARDIARALGTVGHVTMLRRLKAGPFAIEQAISLDKLNALGQGAP---------LEHV 232 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKF-IGMGEIDD 299 L+P+++ D P ++L + + G + + G + + E+ D Sbjct: 233 LLPLEAGLVDIPALDLDPEQARAVRQGRVLTGLPFEDG----LYWARLGTVPVALVELSD 288 Query: 300 EGRVAPRR 307 G + R Sbjct: 289 -GNLKVSR 295 >UniRef50_A9BI94 tRNA pseudouridine synthase B n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BI94_PETMO Length = 305 Score = 277 bits (708), Expect = 4e-73, Method: Composition-based stats. Identities = 90/297 (30%), Positives = 147/297 (49%), Gaps = 24/297 (8%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G L+++KP+G++S+D + +++ + + GH G LDP ATG+L + + +ATK ++ + Sbjct: 3 SGFLVINKPKGITSHDVINILRKKFGLQKIGHAGTLDPFATGVLVVGVNKATKLLEFFQN 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y V A LG TDT D +G+I E+ V L +F G+ Q+P YSA K Sbjct: 63 EKKTYYVKAELGIITDTFDIEGKIQEKNIVTQQHISNLKDICFSFVGEYLQVPPAYSAKK 122 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 Y+GKKLYEYAR+G + + + +Y+L EG E + S GTYIR++I D+G Sbjct: 123 YKGKKLYEYAREGKIINLPPKKVKIYQLSNFSQEGQEFSFFVEVSSGTYIRSLIMDIGYA 182 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA L R+ K+ ++ + LE + L+ +L ++ D Sbjct: 183 LGCGAVTKELCRVKSGKFELKDSILLEEVS----------------LEKMLKMDEA--LD 224 Query: 251 YPVVNLPLTSS----VYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRV 303 P V + N + S V++ + E F+G+G + + Sbjct: 225 LPYVKINNGQLVIKGQQIYKDNVLEFSNFNKNDYVKIYD-EKECFLGIGRAEKKSTF 280 >UniRef50_B1ZX46 tRNA pseudouridine synthase B n=3 Tax=Verrucomicrobia RepID=TRUB_OPITP Length = 241 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 97/245 (39%), Positives = 143/245 (58%), Gaps = 14/245 (5%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +PR+ ++GVLL+DKP +S+D + +++R N R GH G LDP+ATG++ + +G Sbjct: 1 MIQPRKE---LDGVLLVDKPTAHTSHDVVARLRRKLNMKRIGHAGTLDPMATGLMILLIG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDI 119 +AT SQYL DK Y LG+ TD+ DADG+++ PV + ++ AA+ F GD Sbjct: 58 KATTISQYLTSLDKEYEGTIELGKVTDSQDADGEVLSTLPVPPFTEAEIRAAMAGFMGDQ 117 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTY 179 Q P MYSA+K G LY+ AR+G EV RE R I V R + + + C+KGTY Sbjct: 118 YQTPPMYSAIKVDGVPLYKTARKGGEVEREPRFIRVSSFELTRFALPQFDFRLRCTKGTY 177 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 +RTI DLG++LGCGAH+ LRR A K+ + +TL+ + L ++ Sbjct: 178 VRTIAHDLGQRLGCGAHLAALRRTATDKFKLADALTLDAIEAL----------PLPEIEK 227 Query: 240 LLMPM 244 L+P+ Sbjct: 228 RLIPV 232 >UniRef50_C0QHM4 TruB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHM4_DESAH Length = 302 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 89/296 (30%), Positives = 135/296 (45%), Gaps = 19/296 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L +DKP G+SS + +VKR N +AGHTG LDP ATG++ + T+ S++LL Sbjct: 3 SGILAVDKPGGISSARLVSRVKRCLNVKKAGHTGTLDPFATGLMLCGINSGTRISRFLLG 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVE----ERPVTFSAEQLAAALDTFRGDIEQIPSMYS 127 KRY LG TDT D G + + +Q+ ++TF G Q P +YS Sbjct: 63 GPKRYTATLCLGVETDTLDCTGVKEQPANPTTVAAITPDQIIRVVNTFVGVQMQQPPVYS 122 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 ALK++G+ LY ARQG V + R I ++ + + +++H S GTYIR++ D+ Sbjct: 123 ALKHEGQPLYRLARQGRPVQKPLRQIEIFSASVEAIDLPHVTIKVHSSTGTYIRSLARDI 182 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G LGCGAH++ LRR + V+ V L L + + ++PM Sbjct: 183 GSALGCGAHLVELRRTESCGFSVDNAVPLSDLEAMDKDEPLS----------RIVPMHEV 232 Query: 248 ASDYPVVNLPLTSSVYFKNGN-----PVRTSGAPLEGLVRVTEGENGKFIGMGEID 298 S P + G + L +G + E D Sbjct: 233 LSFMPSFAADMQMVKRVGFGQDIGLEKLMAPPEDPRSLFVQILDPHGALAAVVEYD 288 >UniRef50_B6BVJ8 tRNA pseudouridine synthase B n=1 Tax=beta proteobacterium KB13 RepID=B6BVJ8_9PROT Length = 298 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 99/300 (33%), Positives = 154/300 (51%), Gaps = 18/300 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G + + KP+G SSN L K+K + +AGH G LDP ATG++PI GEATKFS +L+ Sbjct: 10 SGYISVIKPKGWSSNQLLSKLKWLLQIKKAGHGGTLDPFATGIVPIFFGEATKFSNRVLE 69 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA--EQLAAALDTFRGDIEQIPSMYSAL 129 S+K Y +LG + T D +G+++++ L L+ F G Q P YSAL Sbjct: 70 SNKEYIAELKLGFESSTGDTEGELLKDDSFNEEKLPSNLENILNEFLGIQRQTPPKYSAL 129 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 KY GK YEYAR GIE+P + R I ++ + + +++ ++ CSKGTYIRT+ +D+ + Sbjct: 130 KYNGKPYYEYARAGIEIPIKTREIEIFSIDLVNFTNHQITFQVSCSKGTYIRTLGEDIAK 189 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 K+G ++ L R+ V K +++ + EL + E LL P+ Sbjct: 190 KIGTKGYLTNLERIRVGKIKKIDSFSVDQIEEL----------SIEERKKLLKPI-YQLL 238 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 + P + L + NG + + G + FIG+G I D + P RL+ Sbjct: 239 ELPKIELNNNDTKNILNGQNLDIA--IEAGEFLLFF--EKTFIGIG-ISDGEMIKPVRLI 293 >UniRef50_Q4JV56 tRNA pseudouridine synthase B n=5 Tax=Corynebacterium RepID=TRUB_CORJK Length = 308 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 97/322 (30%), Positives = 152/322 (47%), Gaps = 30/322 (9%) Query: 3 RPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEA 62 R R +GV+L+DKP G +S+D + K++RI R GH+G LDP+ATG+L + + Sbjct: 4 RSARSVLSRSGVVLVDKPSGPTSHDMVAKLRRIMGTRRIGHSGTLDPMATGLLVVGVERG 63 Query: 63 TKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT----FSAEQLAAALDTFRGD 118 TKF +++ DKRY RLG T T DA G ++ + +Q+ A RGD Sbjct: 64 TKFLAHVVTHDKRYEATVRLGVATHTDDAQGDVLSTASPQDLQALTEQQVREAFAAQRGD 123 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH------EGNELELEI 172 I Q P+ S++K GK+ +E R+G +V RP+T++ L + + + + Sbjct: 124 IMQRPTSVSSIKIDGKRAHELVREGHDVVLPERPVTIFSLEVLDVVVDDATSCIDARISV 183 Query: 173 HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIP 232 HCS GTYIR I D+GE LG G H+ LRR +V + V TLE L E D Sbjct: 184 HCSSGTYIRAIARDVGEALGVGGHLTQLRRTSVGPFDVSEARTLEQLEEDPSLTLNLD-- 241 Query: 233 AAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFI 292 ++ + + + V G ++ G VR +G+ Sbjct: 242 ------------EAMVRCFDTREISESEGVDLSLGKWLKPVG---NKGVRAAVTPSGQ-- 284 Query: 293 GMGEIDDEGRVAPRRLVVEYPA 314 + ++++G+ + V PA Sbjct: 285 AIALVEEKGK-RASSVFVARPA 305 >UniRef50_B1MZH0 tRNA pseudouridine synthase B n=3 Tax=Leuconostoc RepID=B1MZH0_LEUCK Length = 315 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 91/307 (29%), Positives = 145/307 (47%), Gaps = 22/307 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GV++++KP+G++S D + KV+R + GH G LDP +G+L + LG+ATK L Sbjct: 20 VDGVIVINKPRGVTSFDVVAKVRRAIGQKKVGHAGTLDPDVSGVLVVALGKATKLIDELQ 79 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQIPSMYSA 128 KRY LG T+T D G+I+ E+ V +S +Q+ A+ + G I+Q+P MYSA Sbjct: 80 SRPKRYVGDITLGFATETEDLSGEIISEKEITVPYSDQQIDEAIQSLNGSIKQVPPMYSA 139 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELL-----FIRHEGNELELEIHCSKGTYIRTI 183 +K GK+LYEYAR V R R +Y+ H+ + + E SKGTYIRT+ Sbjct: 140 VKVAGKRLYEYARAVETVTRPIREAHIYDFHRTSLVDYAHQQQKFDFEATVSKGTYIRTL 199 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 D G +LG A + L R+ S + + + L + A + ++P Sbjct: 200 AVDTGRQLGMPATMTRLERVMGSGMTLSQAIELNDVMTWPRTA----------ILEKVIP 249 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE-GR 302 + ++P+ L KNG + A L + E + + G Sbjct: 250 ISK-LLNWPIKPLTDDEWFAVKNGQVITQWPADDNYLQLTYQDE---VKAVYAYNQNTGE 305 Query: 303 VAPRRLV 309 R + Sbjct: 306 WRSRYVF 312 >UniRef50_C0W0C7 Possible tRNA-pseudouridine synthase I n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0C7_9ACTO Length = 339 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 97/330 (29%), Positives = 157/330 (47%), Gaps = 30/330 (9%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 PR +G+++++KP G++S+D + +R+ + GH G LDP+ATGML I +G+AT Sbjct: 21 PRAETTAADGLIIINKPAGVTSHDVVSASRRLSATRKVGHAGTLDPMATGMLIIGVGKAT 80 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSA-----EQLAAALDTFRGD 118 + Y+ +DK Y +LG TD+ DADG+I + + +++ A + F GD Sbjct: 81 RLLHYITGADKGYLARIQLGVSTDSDDADGEITAVNSIPGTRLFGLTKEIDAQMRYFVGD 140 Query: 119 IEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYE-------------LLFIRHEG 165 I Q P+ SA+K GK+ + R G E+ ARP+ V + L + Sbjct: 141 IMQRPTTVSAIKVNGKRAHALHRAGEEIELAARPVHVAKFARMSEVEFVEVTLDDEPYTF 200 Query: 166 NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 E ++ + CS GTY+R + DLG LG GAH+ +L R V + +M L + V + Sbjct: 201 AEFDVVVECSSGTYVRALARDLGAALGLGAHLTHLHRYRVGSWTASQMRELTDISAEVAE 260 Query: 226 AEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTE 285 Q + + D+ +Y + L ++ NGN R + + + V Sbjct: 261 NGQVQVISLT---------DACLQEYDGLELNEVQAIALCNGNTTRLTADATKSPI-VAA 310 Query: 286 GENGKFIGMGEIDDEGRVAPRRLV-VEYPA 314 NG+ G+ E D G P + E PA Sbjct: 311 LYNGQVRGLLERDGNG-YRPLVIFETEMPA 339 >UniRef50_B0S1E2 tRNA pseudouridine 5S synthase n=2 Tax=Finegoldia magna RepID=B0S1E2_FINM2 Length = 287 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 87/300 (29%), Positives = 151/300 (50%), Gaps = 18/300 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++ V+ + K +G +S D + K I + GH G LDP ATG+L + +G+ TK ++YL+ Sbjct: 1 MDCVINVFKEKGYTSQDVVSICKGILKTKKIGHAGTLDPDATGVLLLGVGKGTKITEYLM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRG-DIEQIPSMYSAL 129 + K Y G TDT D G + T+ E+L LD G IEQ+P MYSA+ Sbjct: 61 EHGKTYIFEMCFGTSTDTLDLSGNVTGFSEKTYDKEKLKKILDDLNGKTIEQVPPMYSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKKLYEYAR+ E+ R++R IT++ + + N +++ CSKGTYIR +I+D+ + Sbjct: 121 KVNGKKLYEYARENKEIKRKSRKITIFNIEPLYILENSCIIKVRCSKGTYIRVLIEDIAK 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KL A++ L R+ + ++ V ++ LR+ ++ + + + Sbjct: 181 KLDKLAYMKSLIRVNSGGFDIKDSVKIDSLRKCN-------------IEDVSFSVYESLT 227 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 + + L + NG + ++ + + +FIG+G I+D + ++ Sbjct: 228 EMKSIELDESLYKKITNGVKINIVHDNIDNIKVIC---KDRFIGIGSIEDH-ILKMNKVF 283 >UniRef50_Q46JB9 tRNA pseudouridine synthase B n=2 Tax=Prochlorococcus marinus RepID=TRUB_PROMT Length = 314 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 80/315 (25%), Positives = 155/315 (49%), Gaps = 28/315 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G +++DKP G++S+D + ++++++ + GH+G LDP TG+LPI +G+AT+ YL S Sbjct: 6 GFVVIDKPSGLTSHDCVNRLRKVFGIKKIGHSGTLDPAVTGVLPIAIGDATRLISYLQGS 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR I +LG T+T D G+I+E + + + L+ FRG+I Q P ++S++ Sbjct: 66 -KAYRGIIQLGATTNTDDMQGEIIESKAWPLITQNYINYLLENFRGEILQKPPIFSSVHI 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIIDDLGE 189 +G++ Y+ AR+G + + +T+ +L I + EL +++ CS GTYIR++ D+G+ Sbjct: 125 KGERAYKKARKGEKFDLIPKKVTINKLNLISWSQDKGELLVDVDCSTGTYIRSLARDIGD 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 K+GCG ++ LRR + V L + + ++ + + L + Sbjct: 185 KIGCGGYLKSLRRTKAYNFIENHSVKLPEKSDFYPEGDKPKVLNPNIFFKHLSSFEL--- 241 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVR---------------VTEGENGKFIGM 294 + + +++G + V + + K +G+ Sbjct: 242 ------ISEEEIISWRSGRKISFQNNVKRLKVTKNNEVEDSFIHNNHILVLNKENKILGI 295 Query: 295 GEIDDEGRVAPRRLV 309 +DD + P+ + Sbjct: 296 ACLDDSFAIKPKVVF 310 >UniRef50_A7BD72 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD72_9ACTO Length = 355 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 160/353 (45%), Gaps = 47/353 (13%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M+R R G+L++DKPQG++S+D + +V+R+ + GH G LDP+ATG+L I +G Sbjct: 6 MARRPDNPRP--GLLVIDKPQGLTSHDVVSRVRRLARTRKVGHGGTLDPMATGVLVIGIG 63 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE-RPVTFSAEQLAAALDTFRGDI 119 +ATK ++ K YR R G T+T DA+G + S EQL AAL RGDI Sbjct: 64 KATKLLTWVSGHSKEYRATIRFGVATNTDDAEGVATAAVGCASLSEEQLEAALAPQRGDI 123 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELEL--------- 170 Q+PS SA+K GK+ Y AR G +V ARP+ + L + + Sbjct: 124 MQVPSTVSAIKVNGKRAYALARAGEDVELAARPVRISRLEVLAPPRPAWCILDEPDPETA 183 Query: 171 -----------------EIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERM 213 + CS GTY+R + D GE LG GAH+ LRR V P+E Sbjct: 184 PDGAVAPGSVRVVDVDVVVECSSGTYVRALARDAGEALGVGAHLTALRRTRVGDVPLEAA 243 Query: 214 VTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT- 272 +TL+ L VE A + AE + PL+ ++ + +P + + + F +G R Sbjct: 244 MTLDELSAAVEAASAEGESDAEPVLPLVPLGEAARTMFPSLLMTEAEAGAFAHGQAPRRS 303 Query: 273 ----------------SGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 S E +G +G+ ID R+ + Sbjct: 304 RSELAQWAVEAGYCPKSAPEEEPAPIAAVAPDGTVLGLLRIDA-ARLRTVLVF 355 >UniRef50_Q8CWM3 tRNA pseudouridine synthase B n=6 Tax=Cyanobacteria RepID=TRUB_THEEB Length = 287 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 144/306 (47%), Gaps = 24/306 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L L+KP G +S+D + +++R R GH G LDP+ATG+LPI LG AT+ YL Sbjct: 1 MFGFLNLNKPAGCTSHDCINELRRRLRLKRIGHGGTLDPMATGVLPIALGAATRLLPYLS 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 D K Y R G T T D G+I +E+ + + L F G+IEQ+P YSA+ Sbjct: 61 D-RKAYIGTVRFGMSTTTDDITGEICQEQGASHLTLAAIQEQLPQFIGEIEQLPPAYSAI 119 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---NELELEIHCSKGTYIRTIIDD 186 + G++LY AR G V R +TVY + + + EL L I C GTYIR + D Sbjct: 120 QVAGQRLYARARAGEVVSVPPRIVTVYRIEVLHWQPGRYPELTLHITCGSGTYIRALARD 179 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LG LG G + L+R+ +E +LE + A E L L Sbjct: 180 LGTALGVGGTLAALQRIESGGLRIEESHSLESI-------------APEHLP--LCSPQE 224 Query: 247 PASDYPVVNLPLTSSVYFKNGNPVRTSG-APLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 S P + L + +G V G P + V VT +G+G I R+ P Sbjct: 225 VLSHLPWLELNAAQLNDWYHGRAVICEGLPPADSCVGVTFAT--ACVGVG-ISGGDRLHP 281 Query: 306 RRLVVE 311 + ++ E Sbjct: 282 KVVLKE 287 >UniRef50_C7R3E1 tRNA pseudouridine synthase B n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R3E1_JONDD Length = 333 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 85/319 (26%), Positives = 147/319 (46%), Gaps = 25/319 (7%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 R RR +G++++DKP GM+S+D + ++R+ + GH G LDP+ATG+L + +G Sbjct: 22 PRQPRRPTAADGIIVVDKPTGMTSHDVVAIMRRLAGTRKVGHAGTLDPMATGLLVVGVGR 81 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIE 120 T+ +L +DK Y RLG T + DADG + + +P + EQL AA G I+ Sbjct: 82 GTRLLHFLTAADKSYTATVRLGVATVSEDADGDVTDTQPCDHVTREQLQAAAARLTGVID 141 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIR---------HEGNELELE 171 Q+PS SA+K G++ Y+ R G +V AR +TV + ++ L Sbjct: 142 QVPSAVSAVKIDGRRAYDRVRAGEDVVLPARSVTVSRFDIVDVVDGPPHHGVATKDVLLS 201 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDI 231 + S GTY+R + DL + +G H++ LRR V+++ + ++ L++ + Sbjct: 202 VDVSSGTYVRALGRDLAQIVGTVGHLVALRRTRVAEWTLAEARSVPQLQDTDPTVPLDVM 261 Query: 232 PAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKF 291 + L V + + +G + T L G E G+ Sbjct: 262 DLGSAAERALR----------VWRVSEAQAGRLAHGQRLTTE---LSGQYAAV-SEAGEL 307 Query: 292 IGMGEIDDEGRVAPRRLVV 310 + + + +G P + V Sbjct: 308 VAVVQC-GQGVARPVTVFV 325 >UniRef50_D2R9Q7 tRNA pseudouridine synthase B n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2R9Q7_GARVA Length = 367 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 89/348 (25%), Positives = 153/348 (43%), Gaps = 50/348 (14%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+LL+DKPQG++S+D + + + + R GH G LDP+ATG+L I G AT+ Y+L Sbjct: 6 SGLLLVDKPQGVTSHDIVACARHLLHTKRVGHAGTLDPMATGLLIIGFGNATRLLNYMLG 65 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEER-----------------PVTFSAEQLAAALDT 114 +K Y + RLG+ T T DA+G+I+ + + S E++ + Sbjct: 66 HNKTYEAVIRLGEATTTDDAEGEILPDDALNIGPGVHVANKDMSFEKSLSFERIKQVVSE 125 Query: 115 -FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--------- 164 G I Q P+ +SA+K G++ Y+ AR+G V R I V + Sbjct: 126 NLVGKIMQAPTAFSAIKINGQRAYDLAREGKSVEIAPREIFVSDFSVSNPRITRGVSGKL 185 Query: 165 GNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 ++ ++ CS GTYIR + DLG LG G H+ LRR +V + V L+ ++ E Sbjct: 186 VCDISAKVSCSSGTYIRALARDLGRLLGVGGHLTQLRRTSVGDFSVTDSRVLKLRSQMRE 245 Query: 225 --------QAEQQDIPAAELLDPLLMP------MDSPASDYPVVNLPLTSSVYFKNGNPV 270 Q + +P+ + ++P MD+ + P +++ + + G + Sbjct: 246 FTDRNGVLQHRSKAVPSDDFDANNMLPKICLNMMDAASHSLPTLSIDENQAKDLRFGRWI 305 Query: 271 RT------SGAPLEGLVRVTEGENGKFIGMGEIDDE---GRVAPRRLV 309 P V E + + E+ ++ P + Sbjct: 306 ELKSGINYENYPAIAYVPNANTEECDVVAVVELTKNIKSNQIKPIVVF 353 >UniRef50_C0GUB0 tRNA pseudouridine synthase B n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUB0_9DELT Length = 309 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 91/298 (30%), Positives = 147/298 (49%), Gaps = 18/298 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GV++L+KP+G +S L K+K + + GH G LDP+A G+L LG+ATK + Y+ + Sbjct: 14 DGVMVLNKPEGPTSTACLNKIKSRFKLKKLGHAGTLDPMARGVLVALLGQATKLAPYITE 73 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y + RLG TDT D G ++EE+ S E + + ++ EQ SA K Sbjct: 74 GRKTYWGVIRLGVSTDTYDMQGTVLEEKDCSEVSPETIEREIKSWEDLKEQPVPAVSAAK 133 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +QGK Y AR G EVP + + I +Y+ + E +E I CS GTY+R++ LG + Sbjct: 134 HQGKPFYALARAGQEVPCKTKEIDIYQAQVLNIEPPLVEFRITCSAGTYVRSLAHSLGMR 193 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 +GC A + L R + +++ V L+ L E + L+ L+P+ S Sbjct: 194 VGCCAALAELVREKSHPFSLDQAVDLDTLMEARD------------LNEHLLPIPRAMSH 241 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAP----LEGLVRVTEGENGKFIGMGEIDD-EGRV 303 + V L + +NG P+ AP + + +G + + E +GR+ Sbjct: 242 WEHVRLDPEQEAFVRNGRPIEARNAPRTVDGQHPRALLLSMDGSSLALAEARKTDGRL 299 >UniRef50_D1N2Y9 tRNA pseudouridine synthase B n=2 Tax=Lentisphaerae RepID=D1N2Y9_9BACT Length = 254 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 128/220 (58%), Gaps = 1/220 (0%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFS 66 +GVLL+DKP+ +S D + V+ +N + GH G LDP ATG+L + LG+ T+ S Sbjct: 11 PPFQTSGVLLVDKPKEWTSFDVVNFVRARFNVPKVGHCGTLDPAATGLLVLVLGKFTQLS 70 Query: 67 QYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSM 125 DK Y +LG TD+ D DG + E + + EQL A L F G+ Q P M Sbjct: 71 SKFSGEDKIYEATLQLGLETDSCDLDGTVTAEHDWSGVTEEQLRATLAGFVGEQMQTPPM 130 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 SA+K GKKLYE ARQG+EV RE++PIT++ L R E + +HCSKGTY+RT+ Sbjct: 131 VSAVKKDGKKLYELARQGVEVERESKPITIFSLDVTRCELPFCDFTLHCSKGTYVRTLCS 190 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 D G+KLGCG + LRR ++ + VT++ L+ + Sbjct: 191 DAGKKLGCGGTLAALRRTRSGQFSLADAVTVDTLKTFEQA 230 >UniRef50_P59880 tRNA pseudouridine synthase B n=2 Tax=Prochlorococcus marinus RepID=TRUB_PROMA Length = 313 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 86/315 (27%), Positives = 154/315 (48%), Gaps = 30/315 (9%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L+++KP G++S+D + +++RIY R GH G LDP TG+LPI +G+AT+ +L S Sbjct: 7 GFLVINKPAGLTSHDCVNRLRRIYGIKRIGHGGTLDPAVTGVLPIAIGKATRLLSFLP-S 65 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ-LAAALDTFRGDIEQIPSMYSALKY 131 K Y +LG T+T D G+ + E E + L+ F+G+I+Q P ++S++ Sbjct: 66 PKTYEGTIKLGISTNTDDLTGETISEHSWDQVKENSILNCLNKFQGEIKQCPPIFSSVHI 125 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDDLGE 189 G++ Y+ AR+G + I +Y + I + ++LE+HCS GTYIR++ D+G+ Sbjct: 126 NGERAYKKARRGEFFELPPKLIKIYRIKLINWNKKDGTIDLEVHCSPGTYIRSLARDIGK 185 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 KLGCG + L R + +++ + L L +L P+++ S Sbjct: 186 KLGCGGALAKLNRTMALGFNIDQAIELPDLD-----------KNNDLNKPMIIDPLKALS 234 Query: 250 DYPVVNL-PLTSSVYFKNGNPVRTSGAPLEGLVRVTEGE-------------NGKFIGMG 295 P + L + ++ G + S + L+ + + E + IG+ Sbjct: 235 HLPSIKLMTIDELSSWRKGKHLILSKSRLKNPLYLIEDDKDIPKTFLTVINNENHLIGLA 294 Query: 296 EIDDEG-RVAPRRLV 309 E ++ P+ + Sbjct: 295 RWHHEPFKIEPKIVF 309 >UniRef50_Q2J732 tRNA pseudouridine synthase B n=1 Tax=Frankia sp. CcI3 RepID=Q2J732_FRASC Length = 327 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 95/311 (30%), Positives = 151/311 (48%), Gaps = 27/311 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++++DKP G +S+D + + +RI R GH G LDP+ATG+L + G T+ +L Sbjct: 33 VDGLVVVDKPAGWTSHDVVARARRILGQRRIGHAGTLDPMATGVLVLGAGRGTRLLGHLA 92 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +DK Y RLG+ T T DA+G VE+RPV A++L A+ G ++Q+P+ SA+K Sbjct: 93 LTDKVYDATIRLGRTTTTDDAEGAPVEDRPVDVDADRLTRAMAALTGVLDQVPASVSAVK 152 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFI----------RHEGNELELEIHCSKGTYI 180 G + Y R G V R +TV+ + G +LE+ + CS GTY+ Sbjct: 153 VGGVRAYARVRAGEVVDLAPRRVTVHRFDLLARRAAGDGAVDPAGTDLEVTVGCSSGTYV 212 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R + DLG L CGAH+ LRR AV + + VTL+ EL +A Sbjct: 213 RALARDLGAALDCGAHLTALRRTAVGPFDLAGAVTLDTFAELGPRAVTSLT--------- 263 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 D+ A+ + ++ ++ +G + G P G V G +G + + E + Sbjct: 264 ----DAVAAGFLRRDVTAEAAADVSHGRRLPPVGRP--GTYGVF-GPDGTVLALVEETEH 316 Query: 301 GRVAPRRLVVE 311 V + Sbjct: 317 A-VRSLVVFAP 326 >UniRef50_B3DZL5 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZL5_METI4 Length = 237 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 134/222 (60%), Gaps = 1/222 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 DI+GVLL+DKP+G +S+D + V++ + + GH G LDPLATG+L + LG+ATK L Sbjct: 2 DIDGVLLVDKPKGFTSHDVVDFVRKKFKIKKVGHCGTLDPLATGLLVLVLGKATKIQDLL 61 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSA 128 + DKRY + RLGQ T T D+DGQ+VEE+PV S E++ D + GD Q+P M SA Sbjct: 62 MSEDKRYEGVLRLGQSTLTQDSDGQLVEEKPVPPLSLEEIKKVFDRYVGDFYQVPPMISA 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K G LY+ AR+G E+ R+ R + VY + + + E+ C KG Y+RT D+G Sbjct: 122 IKSHGVPLYKLAREGKEIERKPRLVHVYSYEIKKWDSPFIHFEVVCGKGFYVRTYCHDIG 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD 230 + LGCG H+ L RL + + + ++ + L L E + Sbjct: 182 QDLGCGGHLFSLVRLQSGNFKLNQALSFDFLNSLKSPEELLN 223 >UniRef50_C7NH20 tRNA pseudouridine 55 synthase n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NH20_KYTSD Length = 348 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 100/351 (28%), Positives = 152/351 (43%), Gaps = 48/351 (13%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 MSRP +G+L+LDKP G +S+D + + + + + GH G LDPLATG+L + +G Sbjct: 1 MSRPAPAP---DGLLVLDKPSGPTSHDIVSRCRWLCATRKVGHAGTLDPLATGVLLVGVG 57 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTF------SAEQLAAALDT 114 AT+ +L+ +DK YR RLG+ T T DA G+ + V + L A + Sbjct: 58 RATRLLTHLVGADKTYRATVRLGEGTTTEDAQGKFTQTTGVPDRDALLADPQPLRDACNA 117 Query: 115 FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-------- 166 G++ Q+PS SALK GK+ + R G E EARP+TV+ + + Sbjct: 118 LSGELMQVPSTVSALKVGGKRAHARVRDGEEFELEARPVTVHAFELLDVQPAQGASGTEV 177 Query: 167 -ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 +L++ + S GTY+R + DLG LG AH+ LRR AV + + ++ L E E Sbjct: 178 LDLDVRVRVSSGTYVRALARDLGGSLGTAAHLTALRRQAVGGFTLASATPVDELVEAREG 237 Query: 226 AEQQDIPAAELLDPLLMPM-DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLV--- 281 ++PM + PV L + +NG V P V Sbjct: 238 GALPASMP-------VLPMGEVARRVLPVAQLDEELTGRVRNGQQVTLPEPPAWARVDAA 290 Query: 282 ----------------RVTEGENGKFIGMGEIDDEGRVAPRRLV--VEYPA 314 G +G + + E + R P + PA Sbjct: 291 GRVLSGPRPPLSADGRAALLGPDGDLVAVVEPSGQ-RWKPVTVFPPATPPA 340 >UniRef50_C7LXY6 tRNA pseudouridine synthase B n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LXY6_ACIFD Length = 298 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 98/311 (31%), Positives = 150/311 (48%), Gaps = 30/311 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 I G+ L+DKP G +S+D + + +R + R GH G LDP+A+G+L + + AT+ +YL Sbjct: 2 IQGIYLVDKPSGPTSHDVVARARRAFGTRRVGHAGTLDPMASGLLVLGVDRATRLLRYLE 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 KRYR +A LG TDT D DG +V+ RPV + E + A F +Q+P YSAL Sbjct: 62 AQTKRYRAVALLGVATDTDDLDGVVVDRRPVEEPTREAVVTACRRFVPGYDQVPPAYSAL 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---------ELELEIHCSKGTYI 180 G++ Y AR+G +V R + + E+ + +EL + C GTY+ Sbjct: 122 HLDGERAYVRARRGEDVTLPRRRVRIDEIEVGAIWRDGGPGEPQGVRVELTVTCGPGTYL 181 Query: 181 RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL 240 R+++ DLGE LG A + LRR V + V + V LE L Sbjct: 182 RSLVRDLGEALGTPATLASLRRERVGRLEVAQAVGLEDLERATP---------------- 225 Query: 241 LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 +P+ + V L + F +G + EG V V G G ++G+ D Sbjct: 226 -VPLPLALAGLGRVELDGVDATRFLHGQRIEAPSGLDEGDVLV--GAEGSWLGVASCDGH 282 Query: 301 GRVAPRRLVVE 311 +APR ++V+ Sbjct: 283 -VLAPRVVLVD 292 >UniRef50_C1ZEI4 tRNA pseudouridine 55 synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZEI4_PLALI Length = 313 Score = 269 bits (689), Expect = 8e-71, Method: Composition-based stats. Identities = 87/306 (28%), Positives = 144/306 (47%), Gaps = 21/306 (6%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G L + KP M+S D + K++R + GH G LDPLA G+L I +G AT+ ++++ Sbjct: 4 GFLNIHKPLRMTSRDVVSKIERAVRPLKVGHAGTLDPLAEGVLVIGIGPATRLTEHVQAL 63 Query: 73 DKRYRVIARLGQRTDTSDADGQI-VEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y LGQ T+T DA+GQ+ + + E + L F G I+QIP +SA+ Sbjct: 64 PKGYSATFHLGQTTETDDAEGQLSTQVDTQHLTRELIEQELTHFCGQIQQIPPRFSAVHV 123 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKL 191 GK+ Y+ AR G + + + V++L ++ ++EL+I C GTYIR++ DLGEKL Sbjct: 124 AGKRAYDLARSGQDFELTPKTVEVHQLALTKYANPDIELQIECGSGTYIRSLARDLGEKL 183 Query: 192 GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDY 251 CGA++ L R + + ++ + L+ L A+ L PLL+ ++ Sbjct: 184 QCGAYMSALTRTHIGPFHLDSALRLDSLPNGFSLAD---------LQPLLLHPMLAFTES 234 Query: 252 PVVNLPLTSSVYFKNGNPVRTSGA----------PLEGLVRVTEGENGKFIGMGEIDDE- 300 + V ++G + P E+ + I + E + Sbjct: 235 QRWVATRQAVVDLQHGKNISGDALQALHSTAESQPEIPAHVCILNEDREVIAVAEFCPQT 294 Query: 301 GRVAPR 306 + PR Sbjct: 295 KLLRPR 300 >UniRef50_C2BRN4 Possible tRNA-pseudouridine synthase I n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BRN4_9ACTO Length = 368 Score = 269 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 93/321 (28%), Positives = 155/321 (48%), Gaps = 31/321 (9%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP+G+SSN +++R+ + G+ G LDPLATG+L +G+AT+ QYL Sbjct: 38 GLVIVDKPRGLSSNAVASRIRRLAGQKKVGYAGTLDPLATGILICAIGKATRLLQYLTAH 97 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 DK Y R G TDT DA GQ++ S ++ AAL+ +RG ++QIP+ +SA+K Sbjct: 98 DKVYTARVRFGISTDTDDALGQVLSRAGAALSTAEITAALEPWRGAVDQIPAKFSAIKIG 157 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIR---------------HEGNELELEIHCSKG 177 GK+ Y+ AR G V + RP+T++ L + + ++ + CS G Sbjct: 158 GKRAYDLARAGKNVEIQPRPVTIHRLELRGAPVLETVAGDDSNPPVQVTDADIVVGCSAG 217 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TY+R++ DLG LG GAH+ LRR++V Y +++ +L + + + L Sbjct: 218 TYVRSLARDLGADLGVGAHLTALRRISVGSYGLDQAHSLSEFE---TEVRRYGVLRPLGL 274 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRT-------SGAPLEGLVRVTEGENGK 290 D ++ + ++P T G PLE +G Sbjct: 275 DAAILGI---FPEFPG---DETQVRALSFGQAPALRDSTHAAPNIPLETANSCPNASDGA 328 Query: 291 FIGMGEIDDEGRVAPRRLVVE 311 + + E E + +R+V Sbjct: 329 LVAVTEPVTETKAGDKRVVAL 349 >UniRef50_C7MBA9 tRNA pseudouridine synthase B n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MBA9_BRAFD Length = 318 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 101/322 (31%), Positives = 155/322 (48%), Gaps = 31/322 (9%) Query: 2 SRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE 61 + P G +GVLL+DK G +S+D + +V+ + + GH G LDP+ATG+L + +G+ Sbjct: 8 AAPSAPGSAPHGVLLVDKAAGRTSHDVVARVRWLLGTKKVGHAGTLDPMATGLLVLGVGQ 67 Query: 62 ATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDI 119 T+ YL+ DK Y RLG+ T T D +G+ + E +A +++ L + RGDI Sbjct: 68 GTRLLTYLVGLDKTYEATIRLGRSTTTDDREGEPLGEIVDASGLTAAEISPHLASLRGDI 127 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELL----FIRHEGNELELEIHCS 175 Q+PS SA+K GK+ Y AR G +V ARP+TV E +L+ I CS Sbjct: 128 AQVPSTVSAIKIDGKRAYARARAGEDVQLAARPVTVSRFEAGEARTEGEFLDLDAVIDCS 187 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 GTY+R + DLG LG G H+ LRR AV + V+ + +PA Sbjct: 188 SGTYVRALARDLGAALGMGGHLTALRRTAVGPFSVQDALR---------------VPARG 232 Query: 236 LLDPLLMPMD----SPASDYPVVNLPLTSSVYFKNGNPVRTSGA----PLEGLVRVTEGE 287 D + +P+ A PV+ + + G +R+ A +G V + Sbjct: 233 EGDDVDLPLQGLGAVAARVLPVLEVDAAQAAALGTGQRLRSDAAGDCDEADGPVAALDA- 291 Query: 288 NGKFIGMGEIDDEGRVAPRRLV 309 G+ I + E + G P +V Sbjct: 292 AGRLIAILEREGAG-WRPVLVV 312 >UniRef50_Q72ER4 tRNA pseudouridine synthase B n=10 Tax=Desulfovibrionales RepID=TRUB_DESVH Length = 304 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 88/293 (30%), Positives = 141/293 (48%), Gaps = 20/293 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL- 70 +G+L+LDKP G SS + KVKR + GH G LDP+A G+L + LG ATK S +L+ Sbjct: 6 HGLLVLDKPSGPSSAQCISKVKR-LGQKKIGHAGTLDPMAGGVLLVLLGHATKISGHLMA 64 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSAL 129 D +K Y RLG+ TDT DA+G + P + + A +D++ G EQ YSA Sbjct: 65 DGEKVYAGTLRLGETTDTWDAEGTVTATAPWHHVTEADVRAIVDSWLGSSEQEVPPYSAA 124 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K+QG+ LY+ +R G E P + + + + + + + + CS GTYIR++ LG Sbjct: 125 KHQGQPLYKLSRAGRETPVKTKTVEISLAEVVWCDLPHVRFRVRCSSGTYIRSLAHSLGI 184 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 +LGCGA + L R + ++ TL+ + + L ++P+ Sbjct: 185 RLGCGAVLTELTREYSHPFGLDMAHTLDAV-----------LAEPGRLAERVIPITHALP 233 Query: 250 DYPVVNLPLTSSVYFKNGNPVR------TSGAPLEGLVRVTEGENGKFIGMGE 296 +P V + L +NG P+ +EG+ + + + E Sbjct: 234 HWPKVGISLQQEASVRNGIPLPYQPEMVADMPFMEGVKAILLDTREVPVALVE 286 >UniRef50_D1IN94 Whole genome shotgun sequence of line PN40024, scaffold_66.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IN94_VITVI Length = 502 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 77/216 (35%), Positives = 121/216 (56%), Gaps = 3/216 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 V+L++KP+G +S K++R+ + GH G LDP+ATG+L +C+G+ATK + Sbjct: 285 VVLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMATGLLIVCVGKATKLVESYQGMV 344 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQ 132 K Y I RLG+ T T DAD +++ P E + +F G+I Q+P M+SA+K Sbjct: 345 KGYSGIFRLGEATSTWDADSPVIQREPWEHIKDENIKKTAASFCGEIWQVPPMFSAIKVG 404 Query: 133 GKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+K+YE AR+G V R I++++ R + L + CSKGTYIR++ D G+ Sbjct: 405 GEKMYEKARRGESVELSPRRISIFKFDIERSLDDRQNLVFRVTCSKGTYIRSLCADFGKA 464 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 LG AH+ LRR ++ Y + + L E + + Sbjct: 465 LGSCAHLAALRRDSIGPYSADDAWEFKDLEEAITKG 500 >UniRef50_D0MI93 tRNA pseudouridine synthase B n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI93_RHOM4 Length = 249 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 133/233 (57%), Gaps = 1/233 (0%) Query: 4 PRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEAT 63 PR R VLL+DKP+G++S D +++++++ + GH G LDP+ATG+L +G AT Sbjct: 17 PRLPERWDAAVLLIDKPKGITSFDVIRRLRKLLRVRKIGHAGTLDPMATGLLICLIGRAT 76 Query: 64 KFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQI 122 ++ + + +K Y + RLG+ T + DA+ ++VE R + L F G+I Q Sbjct: 77 RWMTHFMAQEKEYEGVMRLGEITPSYDAETEVVERRSWEHLTDADLERVRHQFVGEIVQQ 136 Query: 123 PSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRT 182 YSA+K +GK+LYE AR G V R +R + +Y + +G ++ + CSKGTYIR+ Sbjct: 137 VPAYSAVKVKGKRLYEQARAGKAVERPSRRVQIYAFELLGRDGADVAFRVRCSKGTYIRS 196 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 ++ D G+ LGCGAH++ LRR Y VE+ TLE L E ++ Sbjct: 197 LVHDFGQALGCGAHLVELRRTRSGPYRVEQAWTLEALAEALQARTSSQPERKS 249 >UniRef50_C4LJ77 tRNA pseudouridine synthase B n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJ77_CORK4 Length = 351 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 94/350 (26%), Positives = 153/350 (43%), Gaps = 53/350 (15%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++++DKP GM+S+D + ++R+ + GH G LDP ATG+L + + TKF +L+ Sbjct: 5 SGIVIVDKPAGMTSHDVVSAMRRLMRTRKVGHAGTLDPAATGVLILGIERGTKFMTHLVA 64 Query: 72 SDKRYRVIARLGQRTDTSDADGQIV------EERPVTF-------------------SAE 106 + K Y RLG T T DA+G+ + EE + E Sbjct: 65 NTKSYDATIRLGFATTTDDAEGEPIPYPDDSEENSIQAAARPLISPSTRERLSLLLSKPE 124 Query: 107 QLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG- 165 ++ A + GDI Q PS SA+K G++ Y+ R G EV RP+TV Sbjct: 125 RIDRAREQLTGDIMQRPSSVSAIKVDGRRAYDRVRSGEEVSLPPRPVTVSTFDIRDMRTA 184 Query: 166 ----------------NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYP 209 +L++ + CS GTYIR + DLGE LG G H+ LRR V + Sbjct: 185 TIDSGDNNDGDEDVTVIDLDVTVDCSSGTYIRALARDLGEILGVGGHLTALRRTRVGSFS 244 Query: 210 VERMVTLEHLRE----LVEQAEQQDIPAAELLDPLLMPMDSPA-SDYPVVNLPLTSSVYF 264 ++ TL+ LR+ ++ + + L +D +P+ +L + Sbjct: 245 LDDAKTLDQLRDEQSLAEQRIRDEQLTGETPRASLSYSLDQAITRSFPIRHLRDDEATAV 304 Query: 265 KNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA 314 G + S V G + + + +EG++A + + V PA Sbjct: 305 SMGKRIPASDLKD-----VYAGVSADGHAIALMKNEGKIA-KTVFVARPA 348 >UniRef50_B6AR13 tRNA pseudouridine synthase B n=2 Tax=Leptospirillum sp. Group II RepID=B6AR13_9BACT Length = 325 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 97/295 (32%), Positives = 147/295 (49%), Gaps = 20/295 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ L+DKP GM+S+D + V++ R GH G LDP+ATG+LP+ +G++T+ ++ + Sbjct: 14 SGMFLVDKPAGMTSHDVVDSVRKNLGFPRVGHGGTLDPMATGVLPVFVGKSTRLAEMIHG 73 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK YR R G TDT D++G+++ E +L L F G Q P MYSA+K Sbjct: 74 YDKTYRFDVRFGVTTDTGDSEGKLLTEIKFDQLDRVKLKGVLQDFTGVRLQKPPMYSAVK 133 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFI--RHEGNELELEIHCSKGTYIRTIIDDLG 188 G LY AR+GIEV REAR I +Y L + +G + CSKGT++RTI +++G Sbjct: 134 KNGTPLYRLARKGIEVEREARRIEIYSLEMLTVSPDGKTASFRVKCSKGTFVRTIAEEIG 193 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 E +G G HV+ L R + VE V+L L + E L L Sbjct: 194 EAIGLGGHVVSLCREEFGHFRVEDAVSLGDL---------ISMDMEEGLSSCLWSPSRIL 244 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGA-------PLEGLVRVTEGENGKFIGMGE 296 +P + + G + L +VR+++ GK I +G+ Sbjct: 245 ESFPEIRILDAHLPDIYRGARIPAFQIYRTSGLFNLSEMVRISD-RKGKCIAVGK 298 >UniRef50_Q6MMS4 tRNA pseudouridine synthase B n=1 Tax=Bdellovibrio bacteriovorus RepID=TRUB_BDEBA Length = 308 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 18/307 (5%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 NG+LL+DKP G+SS+D + +++RI + GH+G LDP+A+G++ + E TK SQY+L+ Sbjct: 8 NGLLLVDKPSGISSHDVVARLRRILSTRAVGHSGTLDPMASGLMACLVNEGTKLSQYILE 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALK 130 DK YR+ A+ G RTDT D G+ +E RP + E + + +G++E +YSA+K Sbjct: 68 GDKGYRLRAQFGIRTDTLDTTGETLETRPTDHLTRELILSEALKLQGEMEVEVPIYSAIK 127 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 QGKKLYEYAR EV + + +++ + + E +I CSKG+YIRT ID LG+ Sbjct: 128 VQGKKLYEYARGEQEVTIPKKVMKFWDIEPVEIGSDWAEFDIKCSKGSYIRTWIDLLGKA 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + LRR S Y +++ TLE + V+ L P +PM+ Sbjct: 188 LGCGAAMSGLRRTWSSPYKIDQAQTLEQIEASVKGG---------SLGPAFVPMELALPQ 238 Query: 251 YPVVNLPLTSSVYFKNGNP--------VRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGR 302 + + V NG + ++ ++V E G+ + + ++ Sbjct: 239 VKRIRIKGQDKVLLGNGQISHDLRSQLISAFNPDVDQYIQVLAQEGGELLAVIGLEPGRG 298 Query: 303 VAPRRLV 309 RR+ Sbjct: 299 FVLRRVF 305 >UniRef50_Q6MD66 tRNA pseudouridine synthase B n=15 Tax=Chlamydiales RepID=TRUB_PARUW Length = 262 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 84/214 (39%), Positives = 124/214 (57%), Gaps = 2/214 (0%) Query: 7 RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKF 65 + G+LL++KP+G +S ++ +++ + GH G LDP ATG++ + +G T+ Sbjct: 36 PPSHLEGILLINKPKGKTSFSLVRDLRKRLGVKKIGHAGTLDPFATGVMVMLVGRNYTRL 95 Query: 66 SQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSM 125 S L SDK Y A LG TD+ D +GQ++ + + + EQ+ A F+G IEQ+P M Sbjct: 96 SDQFLLSDKEYIAEAYLGVVTDSYDCEGQVLSQSNIIPTLEQIKEAFSLFQGKIEQVPPM 155 Query: 126 YSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIID 185 +SA K QGKKLYE ARQGI V R+ I+++ + + L I CSKGTYIR+I Sbjct: 156 FSAKKQQGKKLYELARQGIVVERQPVKISIHT-ELLSYNYPYLNFRIECSKGTYIRSIAY 214 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 DLG KLGCGAH+ L R + +E + + Sbjct: 215 DLGTKLGCGAHLSNLTRTRSGAFCLENCLNGAEI 248 >UniRef50_B7ICP6 tRNA pseudouridine synthase B n=1 Tax=Thermosipho africanus TCF52B RepID=B7ICP6_THEAB Length = 306 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 87/290 (30%), Positives = 142/290 (48%), Gaps = 19/290 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 + G L KP+G++S+D + ++++ + GH G LDP A G+L I + AT+ +YL Sbjct: 1 MVGFLNAFKPKGVTSHDVIDELRKKLKTKKIGHAGTLDPFAEGVLVIGISGATRLLEYLK 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + KRY V A LG T+T D GQ+ EER S +++ A+ F+G +Q+P YSA K Sbjct: 61 NEKKRYYVKAILGLITETFDITGQVKEERVCQKSNDEIKNAILAFKGKYKQVPPAYSAKK 120 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 Y G++LY+ AR+G + + +YE+ I+ E E+ S GTYIR++ D+G K Sbjct: 121 YNGERLYKLAREGKIISLPPVEVEIYEIENIKIVPPEFSFEVVVSPGTYIRSLCMDIGYK 180 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 LGCGA + L R +V K+ ++ + L +E + ++ ++ D Sbjct: 181 LGCGATAVELVRKSVGKFSIKDSINPFELS-------------SEQIVNRILRVEEVL-D 226 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPL-EGLVR----VTEGENGKFIGMG 295 P V + NG + R V NG+ + + Sbjct: 227 LPQVEIYKDYVEKIFNGVQPTMDFVKEIKDDFRKDQDVMLVCNGRLVAIA 276 >UniRef50_A8RBN0 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBN0_9FIRM Length = 276 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 134/297 (45%), Gaps = 24/297 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++GVLL+ K M+S+D + +++ I + GH+G LDP ATG+L + +G A K +L Sbjct: 1 MDGVLLIRKEAEMTSHDVVARLRHILKTKKIGHSGTLDPNATGVLLVLIGRACKVLPFLE 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 D+DK Y LG++T D +++ E+ +T L A L TF G +Q+P M S++K Sbjct: 61 DTDKEYIAELELGKQTLGDDIWSEVLAEKEITPII-DLQALLHTFLGKQKQLPPMLSSIK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 GKKLYEYAR V R +T YEL + E + + CS GTYIR++ D+ + Sbjct: 120 VNGKKLYEYARNKEAVEVPMRDVTFYELEVLDEES--MRFRVACSSGTYIRSLCRDVAQA 177 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 G + L R V ++ + VTLE + L + + Sbjct: 178 SGNLGCMKSLVRTKVGRFSLADCVTLEDVEA---------------GHFSLHSVAEVLAH 222 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P + NG VR R ++ + + + E D R Sbjct: 223 LPQI--TYEPMKDIYNGKHVRLDCKED----RAVIMDHLEAVAIYERDHGNVFRCVR 273 >UniRef50_Q1AW51 tRNA pseudouridine synthase B n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AW51_RUBXD Length = 265 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 18/280 (6%) Query: 32 VKRIY-NANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSD 90 +KR+ + GHTG LDPLA+G+L + +G AT+ S+Y+ DK Y AR G +DT D Sbjct: 1 MKRLLPRRTKVGHTGTLDPLASGLLVLLVGRATRLSRYVTGLDKTYVATARFGAASDTLD 60 Query: 91 ADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREA 150 ADG+I+E +L AL F G+I Q+P M SA++ G++LYE R+G+EV RE Sbjct: 61 ADGEILENAGPVPDEAELRRALPRFVGEIRQLPPMASAVRVGGRRLYELHRRGVEVEREP 120 Query: 151 RPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPV 210 R + V+ L + + + CS GTY+RT+I DL LG A++ LRR V V Sbjct: 121 RLVRVHSLELLSFDPPAATFAVSCSSGTYVRTLISDLAASLGTAAYLTALRRTRVGHLRV 180 Query: 211 ERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPV 270 E + + L + ++P + P V + +G + Sbjct: 181 EDALPPQDL-------------DPSTIHHRIIPPSGVLAHLPAVEADEGRARAVASGRGL 227 Query: 271 RTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVV 310 R +G LEG RV G+ + + + GR P ++ Sbjct: 228 RVAG-GLEGSFRV--ERGGELLAVYRAEG-GRARPEVVLC 263 >UniRef50_C1SPK2 tRNA pseudouridine 55 synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPK2_9BACT Length = 297 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 81/304 (26%), Positives = 143/304 (47%), Gaps = 16/304 (5%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVL + K + M+S D ++ V+RI + GH G LDP+A G+LP+C+G ATK Y++ Sbjct: 1 MNGVLNIYKEKDMTSFDVVKAVRRITGVKKCGHLGTLDPMAEGVLPVCVGYATKLVDYMM 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEER-PVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 +DK Y +LG TD+ D+ G ++E+ + E++ L +F G+ E +SA+ Sbjct: 61 AADKEYVAQFKLGCSTDSYDSTGNVLEKCEDIKPDYEEVEKVLKSFVGEPELTIPAFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GK+ YE AR+G R + + ++ + +E E + C KGTY+R++I + G Sbjct: 121 KINGKRAYELARKGEIEDAGKRVMKINDITLMGYEYPEGMFRMSCYKGTYVRSVIHEAGL 180 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG + L R + + L L EL ++ E + +D+ + Sbjct: 181 ILGTYGVMSGLIRTVSGNFDHKTAYKLGELEELKDKGELAGAFTSV--------VDA--T 230 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSG----APLEGLVRVTEGENGKFIGMGEIDDEGRVAP 305 + + + +NG ++ E + G+ + E G +P Sbjct: 231 GWGTAVVHRDAVRLVQNGVSIKRHNYVKLPDGESDMYFMATPEGELLAFAEY-AVGDTSP 289 Query: 306 RRLV 309 R++ Sbjct: 290 LRII 293 >UniRef50_B9XFC5 tRNA pseudouridine synthase B n=1 Tax=bacterium Ellin514 RepID=B9XFC5_9BACT Length = 236 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 1/229 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G LL+DKP G +S+D + ++R + + GH G LDP ATG+L I LG TK S+ L+ Sbjct: 8 DGALLIDKPVGYTSHDVVDAIRRRFQIKKVGHCGTLDPNATGLLIIVLGRGTKLSERLMS 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTF-SAEQLAAALDTFRGDIEQIPSMYSALK 130 SDK Y + G+ TD+ DADG++V PV + +L F GD Q+P M SA+K Sbjct: 68 SDKVYEGTIKFGETTDSYDADGELVTSLPVPPMTLGELNETAAAFVGDQMQVPPMVSAIK 127 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G LY+ AR+G+EV RE R I +Y F + + +KGTY+R++ DLG+K Sbjct: 128 KGGVPLYKLARKGVEVEREPRFIHIYNFRFAEYNEPIGRFRVAATKGTYVRSLAHDLGQK 187 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDP 239 LGCG H+ LRR K+ V + L+ EL ++ + L Sbjct: 188 LGCGGHLATLRRTVSGKFDVANAIRLDQALELSAAELEKRVIPFLKLAA 236 >UniRef50_Q0WVR7 tRNA synthase-like protein n=10 Tax=Magnoliophyta RepID=Q0WVR7_ARATH Length = 540 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 78/218 (35%), Positives = 121/218 (55%), Gaps = 4/218 (1%) Query: 12 NG-VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 NG VLL++KP+G +S K++R+ + GH G LDP+ATG+L +C+G+ATK Sbjct: 320 NGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDRYQ 379 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 K Y + RLG+ T T DAD +++ + + AL +F G+I Q+P M+SA+ Sbjct: 380 GMIKGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKKALTSFLGEIWQVPPMFSAI 439 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDL 187 K G+K+YE AR+G V R I++++ R + L + CSKGTYIR++ DL Sbjct: 440 KVGGEKMYEKARRGETVELSPRRISIFQFDIERSLDDRQNLIFRVICSKGTYIRSLCADL 499 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 + LG AH+ LRR ++ +Y L + + Sbjct: 500 AKALGSCAHLTALRRDSIGEYSANDAWEFNELEAAITK 537 >UniRef50_D0WDY9 tRNA pseudouridine synthase B n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WDY9_9ACTN Length = 315 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 94/323 (29%), Positives = 155/323 (47%), Gaps = 33/323 (10%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R ++ V+ +DKPQGMSS+DA+ +++R++ R GH G LDPLATG+L +C+G A++ Sbjct: 2 KRGQSGLSLVIGIDKPQGMSSHDAVNRIRRMFGERRVGHMGTLDPLATGVLAVCVGPASR 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ---LAAALDTFRGDIEQ 121 YL + DK Y G +TDT DA G+++ + V L + G Q Sbjct: 62 LDAYLTNHDKTYEARIAFGAQTDTDDAAGEVIRQAAVAPELSDATFAQEYLASIVGPRMQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-----LELEIHCSK 176 +P YSA+K G K YE AR+G V EARP+ V + + ++ ++ + SK Sbjct: 122 MPPAYSAIKKDGVKAYEAARRGKAVELEARPVEVRAADLLAIDTDDAGRVFWDVRLEVSK 181 Query: 177 GTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAEL 236 GTYIR+I D G +LG AH+ LRR+ + +E V+LE Sbjct: 182 GTYIRSIARDAGLELGSAAHLSALRRVRAGRLGIEACVSLEE-------------AGRSG 228 Query: 237 LDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE-------GLVRVTEGENG 289 + P+D +P + + + + + G P+ + + G+ + + Sbjct: 229 IAAACDPVD--LLGFPALEVDVRMAESIRCGRPLPLAALDPDAVHAHELGMRCIVFRDE- 285 Query: 290 KFIGMGEIDD-EGRVAPRRLVVE 311 + + E D G+ PR + + Sbjct: 286 -LVALYETDPFRGQAHPRCVFSQ 307 >UniRef50_A1R520 tRNA pseudouridine synthase B n=14 Tax=Actinomycetales RepID=TRUB_ARTAT Length = 311 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 142/314 (45%), Gaps = 29/314 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++++DKPQG +S+D + +++R+ + GH G LDP+ATG+L + + +AT+ Y++ Sbjct: 2 LSGLVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIV 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVE-ERPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K Y RLG+ T T DA+G++ E + + +A + G I+Q+PS SA+ Sbjct: 62 GTSKTYTATIRLGETTITDDAEGEVTEARTAAHITDDAVAVGVAALTGPIQQVPSSVSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRH------EGNELELEIHCSKGTYIRTI 183 K G++ Y R G EV ARP+T++ ++++ + CS GTYIR + Sbjct: 122 KVNGERSYARVRSGEEVKLAARPVTIHRFDVHSITRIDGGRVVDVDVTVECSSGTYIRAL 181 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DLG LG G H+ LRR V Y +++ T +E+ ++ L + Sbjct: 182 ARDLGNALGIGGHLTALRRTQVGPYSLDQART-------LEELAEELEVLEMSLAARSL- 233 Query: 244 MDSPASDYPVVNLPLTSSVYFKNGNPVRT------SGAPLEGLVRVTEGENGKFIGMGEI 297 P L + G + A +G+ + + Sbjct: 234 -------MPNRELSEQETTEISFGRRIAAGPGAGTPDAATAEKPAAAFAPSGELVAL-LA 285 Query: 298 DDEGRVAPRRLVVE 311 D P + Sbjct: 286 DTGSFAKPVLVFAP 299 >UniRef50_C2CXC9 Possible tRNA-pseudouridine synthase I n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CXC9_GARVA Length = 400 Score = 264 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 87/351 (24%), Positives = 144/351 (41%), Gaps = 67/351 (19%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+LL+DKP+G++S+D + + + + R GH G LDP+ATG+L + G AT+ YLL Sbjct: 10 GILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGH 69 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVT-------FSAEQLAA----ALDTFRGDIEQ 121 DK Y + RLG+ T+T DADG +V + E L F G I Q Sbjct: 70 DKTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQ 129 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN---------ELELEI 172 P+ +SA+K G + Y+ AR+G +V E R + +++ + N ++ I Sbjct: 130 TPTAFSAIKINGVRAYDLAREGKDVHLEPREVVIHDFSLLDARFNVGVSGAKVVDVRASI 189 Query: 173 HCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTL---------------- 216 CS GTYIR + DLG LG G H++ LRR + ++ VE L Sbjct: 190 SCSSGTYIRALARDLGRVLGVGGHLVSLRRTRIGEFSVEDDRVLKLETRIRTFTDKNGVT 249 Query: 217 ------------EHLRELVEQ----------------AEQQDIPAAELLDPLLMPMDSPA 248 + + + ++ +L + +L +S Sbjct: 250 QTRAKAVVADRHDSVSDYFSDSVSNSSVACDLSGDSSCKKSAQKNYDLQNRVLSMFESAK 309 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG---LVRVTEGENGKFIGMGE 296 V + + + G + + V+ + E + + E Sbjct: 310 LTMQTVEISENQAKDLRFGRKIVIPAISEKNTIAYVKAEKDEQNDVVAVLE 360 >UniRef50_Q2NIZ2 tRNA pseudouridine synthase B n=7 Tax=Acholeplasmataceae RepID=TRUB_AYWBP Length = 283 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 79/301 (26%), Positives = 148/301 (49%), Gaps = 20/301 (6%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG L++KP+ M+S+D + ++K+ ++ ++ GHTG LDPLA+G+L +C+G+ATK + Sbjct: 1 MNGFFLVNKPEKMTSHDVVFQIKKKFHFDKVGHTGTLDPLASGLLIVCVGKATKLAFLFD 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF-RGDIEQIPSMYSAL 129 K Y+ + DT D G++++ + + + + + +F + QIP M+SA+ Sbjct: 61 KLSKTYQGTFLFNKHYDTLDVKGKLLDTKNIPLNDFAIQTSFASFHQKKYWQIPPMFSAV 120 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR-HEGNELELEIHCSKGTYIRTIIDDLG 188 K +G+K+Y ARQ V R + ++ ++++ +H SKGTYIR++ DL Sbjct: 121 KIKGQKMYRLARQNQVVDIPPREVFIHHFEKKSLFCHDQVDFLVHVSKGTYIRSLARDLA 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +L ++ L+R A+ + ++ T+E+L L+ L++ Sbjct: 181 LQLNTYGALLRLQRTAIGTHLLQNAKTIENLE----------------LNDLIL-DSIFF 223 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRL 308 + Y + L KNG + + V + N F+ +I DE + PR Sbjct: 224 ASYDELILNDYLIKLVKNGTYLDQRQIITQKPFIVKDS-NKNFVAYYDILDENKYYPRYF 282 Query: 309 V 309 Sbjct: 283 F 283 >UniRef50_UPI000050FC6C tRNA pseudouridine synthase B n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FC6C Length = 305 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 85/309 (27%), Positives = 140/309 (45%), Gaps = 26/309 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 GV++ DKPQG++S+ + +++R Y + GH G LDP+ATG+L + LG TK Y+ Sbjct: 8 GVIVCDKPQGLTSHGVVSRIRRWYGTRKVGHAGTLDPMATGVLVLGLGRGTKLLGYITGV 67 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV----TFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y RLG T T DAD + + + +A + RG I+Q+PS SA Sbjct: 68 SKTYLATIRLGSATPTDDADSEPDLFAEPAALSAVTDDGIAHGVSALRGSIDQVPSAVSA 127 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFI------RHEGNELELEIHCSKGTYIRT 182 +K G++ Y R G +V +AR + + + + ++++E+ CS GTY+R Sbjct: 128 IKVNGQRSYARVRAGEDVVLKARRVEISDFTILATRYSVAQGHIDVDVEVDCSSGTYVRA 187 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 + DLG LG H+ LRR V + ++ V + ++ A A L Sbjct: 188 LARDLGGSLGVYGHLTALRRTRVGAFSLDEAVMIPDDLDIEAPALTSLAEVARTL----- 242 Query: 243 PMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEG-LVRVTEGENGKFIGMGEIDDEG 301 P V++ + G + T +P +G V V GE + + E+ G Sbjct: 243 --------LPTVHVDSVEAKALMQGKTIGTDRSPDQGNDVAVIVGEE--LVSIAEVRAGG 292 Query: 302 RVAPRRLVV 310 + + Sbjct: 293 VLKSQTAFA 301 >UniRef50_D1AL32 tRNA pseudouridine synthase B n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL32_SEBTE Length = 280 Score = 263 bits (672), Expect = 6e-69, Method: Composition-based stats. Identities = 91/296 (30%), Positives = 151/296 (51%), Gaps = 24/296 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G++LL+K + +SS A+ +K + GH G LDPLA G++ + + ATK S LL Sbjct: 1 MDGIILLNKEKDISSFKAINNLKYKLKLKKVGHAGTLDPLAEGLMIVLVNNATKLSDMLL 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERP--VTFSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y LG TDT D G+ + ++ E++ L+ F+G+ EQ P MYSA Sbjct: 61 KQSKEYYAECELGYETDTYDCTGEKTQVYDGEISVDKEKITDILEDFQGEYEQTPPMYSA 120 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 +K GKKLY+ AR+GIEV R+++ + + + I GN++ IH GTYIR++I D G Sbjct: 121 IKINGKKLYDLARKGIEVERKSKTVNIEYINRISINGNKIGFYIHAGSGTYIRSVIQDFG 180 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +LG A + L R + K+ +E + + + D +L+ ++ Sbjct: 181 RRLGTYATMTKLIRTKIGKFSLENAYREKEISD----------------DSVLLSVEKIF 224 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 DYP +++ KNG ++ + G + NG++ G+G I +G + Sbjct: 225 -DYPALDVTDEECFKMKNG--IKLNKEIPVGYYSIYN--NGEYKGIG-ISADGILK 274 >UniRef50_B0BXR2 tRNA pseudouridine synthase B n=16 Tax=Rickettsia RepID=TRUB_RICRO Length = 345 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 79/260 (30%), Positives = 125/260 (48%), Gaps = 12/260 (4%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 N L + KP+G+SS + VK+I + GH G LD A G+LP +GEATK + L+D Sbjct: 3 NYWLNIYKPRGISSAQLVSIVKKILGKTKIGHAGTLDVEAEGILPFAVGEATKLIRLLID 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 + K Y + G +T++ D G+++ + S E+ A F G + QIP +SALK Sbjct: 63 ARKTYIFTVKFGMQTNSGDCAGKVIATKDCVPSQEEAYAVCSKFIGSVTQIPPAFSALKV 122 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELE--IHCSKGTYIRTIIDDLGE 189 G + Y+ AR+ +V + R IT+Y+L + + CSKGTYIRT+ +DL Sbjct: 123 NGVRAYKLAREEKKVELKPRNITIYDLKCLNFDEKNATATYYTECSKGTYIRTLAEDLAL 182 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 L VI LRR V + E + + + D L+ + +++ Sbjct: 183 SLQSLGFVIELRRTQVGIFKEENAIRI----------KSPDEITKNALEAKSIKIEAILD 232 Query: 250 DYPVVNLPLTSSVYFKNGNP 269 D V++ + + K G Sbjct: 233 DILVLDATDSQAQQIKYGQK 252 >UniRef50_Q6AJY7 tRNA pseudouridine synthase B n=1 Tax=Desulfotalea psychrophila RepID=TRUB_DESPS Length = 246 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 93/238 (39%), Positives = 136/238 (57%), Gaps = 8/238 (3%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQYLLD 71 G+ L+DKP G++S + +V+RI + GH G LDP ATG+L +C G ATK +D Sbjct: 9 GIFLIDKPVGITSFGVVSRVRRILGMKKVGHAGTLDPFATGLLVVCAGRPATKMISSFMD 68 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y LG T+T D +G + + V AE + L F+G Q+P YSALK Sbjct: 69 GEKEYIATLCLGVETETQDPEGAEIARKQVGFLHAETIETCLAGFKGTQMQVPPAYSALK 128 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELL-----FIRHEGNELELEIHCSKGTYIRTIID 185 +QGK LY YAR+GIEV ++AR ITV+E+ + + L + + CSKG+YIRT+ Sbjct: 129 HQGKPLYYYARKGIEVKKDAREITVHEIERLGEGDLEGDHPSLVIRVRCSKGSYIRTLGS 188 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVT-LEHLRELVEQAEQQDIPAAELLDPLLM 242 D+G+ LGCGAH+ LRR + VE +T ++ L E + + + + E + LL Sbjct: 189 DIGKVLGCGAHLTDLRRTKSGFFNVEDALTDVDMLAEDAHERFMKKVLSVESVGKLLQ 246 >UniRef50_B2UQ50 tRNA pseudouridine synthase B n=3 Tax=Verrucomicrobia RepID=B2UQ50_AKKM8 Length = 244 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 132/232 (56%), Gaps = 1/232 (0%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVLL+DK + M+S+D + +R + GH G LDP+ATG+L + +G+ATK L+ Sbjct: 11 SGVLLIDKARDMTSHDVVAIARRSLGIKKIGHCGTLDPMATGLLMLVVGKATKLQDKLMC 70 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSALK 130 K Y LG T + DA G+IV E V + + + A D F G EQIP M SA+K Sbjct: 71 EHKEYAGTLMLGVETSSQDAMGEIVAEYSVDGVTEQAVREAFDRFDGAFEQIPPMVSAIK 130 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G LY+ AR+G E+ RE RP+ V+ R E++ + CSKG Y+R+ D+G+ Sbjct: 131 KDGVPLYKLARKGQEIVREPRPVEVFGHGISRVAIPEVDFTVQCSKGFYVRSYAYDIGKA 190 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLM 242 LGCGAH+ LRR + ++R +T++ L+ + + + + + L +L+ Sbjct: 191 LGCGAHLSALRRTRSGSFTLDRAITVDTLKTAPREELFRAMLSLKELADILI 242 >UniRef50_C5NXZ4 tRNA pseudouridine synthase B n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXZ4_9BACL Length = 307 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 92/300 (30%), Positives = 152/300 (50%), Gaps = 24/300 (8%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L + K +G++S+D + KV++I + GH+G LDP G+L + LG ATK S Y +D Sbjct: 4 GILPIYKERGVTSHDVVFKVRKILQMKKIGHSGTLDPEVDGVLLLLLGGATKVSDYAMDL 63 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K YR LG +T T D G+IV++ V + ++L L + G+IEQ P +YSA+K Sbjct: 64 GKSYRAEVCLGLKTTTEDLTGEIVDDCKVSNINIDELKEILSSMIGEIEQTPPIYSAIKV 123 Query: 132 QGKKLYEYARQGI-EVPREARPITVYELLFIRH------EGNELELEIHCSKGTYIRTII 184 G+KLYEYAR+G +V R + +Y++ FI + + ++I C KGTY+RTI Sbjct: 124 NGRKLYEYARRGQFDVEIPTRKVNIYDITFIENSEYYKDDRFYFSIDISCGKGTYVRTIA 183 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 +GEKL + + L R + +E + L + + V+ L+ L+ Sbjct: 184 TSIGEKLNLPSTMSKLTRTRSGEITLENCLKLSEVEQKVQDG---------SLEQSLLRK 234 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP----LEGLVRVTEGENGKFIGMGEIDDE 300 + ++ V +P + NG R + P +G+V + I + + D+ Sbjct: 235 EYALEEFQFVEIPKFRAKQVMNGLRFRKNQFPDYDFTDGIVFTY---ENEAIAIYHLKDK 291 >UniRef50_B9FM24 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9FM24_ORYSJ Length = 525 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%) Query: 19 KPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRV 78 KP G +S K++R+ N + GH G LDP+ATG+L +C+G+ATK K Y Sbjct: 314 KP-GWTSFTVCGKLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSG 372 Query: 79 IARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLY 137 + RLG+ T T DAD +++ P E + +FRG+I Q+P M+SA+K G+K+Y Sbjct: 373 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKVGGEKMY 432 Query: 138 EYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDLGEKLGCGA 195 + AR+G V R I++++ R + L + CSKGTYIR++ DLG+ LG A Sbjct: 433 DKARRGETVELSPRRISIHQFDIERSLEDRQNLIFRVICSKGTYIRSLCADLGKALGSCA 492 Query: 196 HVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 H+ LRR ++ + V + L E + + Sbjct: 493 HLTALRRDSIGDFSVNDAWSFAELEEQITKG 523 >UniRef50_C7MNL5 tRNA pseudouridine 55 synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNL5_CRYCD Length = 340 Score = 260 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 91/281 (32%), Positives = 132/281 (46%), Gaps = 23/281 (8%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M + RR + V+ +DKP GM+S+D + +++RIY R GHTG LDP ATG L +C+G Sbjct: 1 MGK-RREASGYSLVIGVDKPAGMTSHDVVDRIRRIYGERRVGHTGTLDPAATGALAVCVG 59 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFS---AEQLAAALDTFRG 117 AT+ ++L+ K Y G TDT DA G+++E+ PV S + A D+ G Sbjct: 60 PATRLDRFLVGHRKEYEFTVVFGAATDTDDAQGRVIEQLPVPVSVGNEAAVRAYFDSQLG 119 Query: 118 DIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----LELEIH 173 Q P YSA+K GKK Y AR+G + RPI +Y+L + E E + Sbjct: 120 TQHQRPPAYSAIKVNGKKSYAEARRGNVIELALRPIEIYKLDLVGFEQTEDMVSWCVRAE 179 Query: 174 CSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPA 233 S GTY+R+I D G G AHV LRRL VE +TL+ + + Sbjct: 180 VSAGTYVRSIARDAGLAFGTCAHVGSLRRLRSGSLAVEDCLTLDEIERNPH---TSALDP 236 Query: 234 AELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG 274 LL+ ++ + +G P+ Sbjct: 237 LTLLNRRIL------------FAGDGQANDVAHGRPLVIDN 265 >UniRef50_C1E906 Predicted protein n=5 Tax=Eukaryota RepID=C1E906_9CHLO Length = 230 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 84/217 (38%), Positives = 121/217 (55%), Gaps = 6/217 (2%) Query: 14 VLLLDKPQGMSSNDALQKVKRI---YNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 VLL+DKP+G +S D + K + + + + GH G LDP ATG+L +C+G+ATK Sbjct: 2 VLLIDKPKGWTSFDVVGKTRWLSRRMGSKKVGHCGTLDPNATGLLILCVGKATKMVDSFT 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y +LG+ T + D ++ E P S LAA GDI+QIP M+SA+ Sbjct: 62 GMDKVYTGTMKLGEGTPSQDCCEEVDERLPWEHVSDADLAAGAKAMEGDIKQIPPMFSAI 121 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIIDDL 187 K +G++LY+ AR+G V R+ R T+ R + + CSKGTY+RT+ DL Sbjct: 122 KVKGERLYKAARRGETVERKERACTINSFEVWRDKVDSQLAHFRVDCSKGTYVRTLAHDL 181 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVE 224 G LG AH+ LRR ++ ++ VE T+E L E E Sbjct: 182 GRNLGTVAHLTELRRESIGEHSVEDAWTVESLFEACE 218 >UniRef50_B6GCN3 Putative uncharacterized protein n=2 Tax=Collinsella RepID=B6GCN3_9ACTN Length = 316 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 87/320 (27%), Positives = 133/320 (41%), Gaps = 30/320 (9%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R+ ++N +L +DKP G++S+D + +V+R N R GH G LDPLA+G++ + +G+AT+ Sbjct: 3 KRKPSELNLLLAVDKPVGITSHDVVSRVRRALNERRVGHAGTLDPLASGVMIVGVGQATR 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRGDIEQ 121 + KRY G T T DA+G+ V+ S L F G+ EQ Sbjct: 63 LLGRITLERKRYLARIMFGCETTTDDAEGEPTRIADVSDDVLSPLFAKGVLREFVGEQEQ 122 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----LELEIHCSKG 177 +P YSA+ G + Y+ AR G +V AR I VY + + + SKG Sbjct: 123 VPPAYSAISVDGVRSYKRARAGEDVELPARTIEVYAADLVAVDEVDGRAVWTASFDVSKG 182 Query: 178 TYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELL 237 TYIR++ D+G G AHV LRR A +E L + A L Sbjct: 183 TYIRSLARDIGRAAGSAAHVADLRRTASGPVTSGMCARIEDLS--------PEHAHAAAL 234 Query: 238 DPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRV--------TEGENG 289 DP + PV L NG + G V +G Sbjct: 235 DP------ARVLGIPVRELTDDELAAVLNGRAIPCGSPRAAGEPFVPGDAASTYALVNDG 288 Query: 290 KFIGMGEIDDEGRVAPRRLV 309 + + + + + + Sbjct: 289 RLRAIAAREGD-YLRMETVF 307 >UniRef50_A4XL67 tRNA pseudouridine synthase B n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=TRUB_CALS8 Length = 287 Score = 259 bits (662), Expect = 9e-68, Method: Composition-based stats. Identities = 76/294 (25%), Positives = 145/294 (49%), Gaps = 23/294 (7%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NG+LL+DKP G++S+D ++ V++++ + GH G LDP A+G+L + +GEATK S + Sbjct: 1 MNGILLVDKPVGLTSHDVVEYVRKLFKT-KVGHCGTLDPFASGLLVLLIGEATKLSSFFT 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y + G +TDT D G++ + ++ L +G++E +YSA K Sbjct: 60 QTKKTYIATMQFGIKTDTLDITGKVQLRNNIFIEQNEIEDCLKDLKGEVELSVPIYSAKK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 +G+KLYEYAR+GI++ +Y + I + + ++ CS GTYIR++ +++ +K Sbjct: 120 VKGRKLYEYAREGIDIEIPKIKSIIYSIEMINYCYPYMTFKVECSHGTYIRSLAEEIAKK 179 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L A ++ LRR + ++ +L+ + E ++P+++ + Sbjct: 180 LSTVATLVQLRRAKNGVFDIKAAFSLDFISE-----------------DSIIPLENLILN 222 Query: 251 YPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 + + + NGNP+ +R+ + F + D Sbjct: 223 --EIIVNESVYKKLINGNPLTRKDIKE---IRLNDSLFEDFYKISMKDAFFVYK 271 >UniRef50_C2D7B6 Possible tRNA pseudouridine 55 synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7B6_9ACTN Length = 315 Score = 259 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 130/312 (41%), Gaps = 23/312 (7%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R IN ++ L KP+G++S+D + ++ I + R GH G LDPLA G+L I +G+AT+ Sbjct: 2 KRGQSGINCLIALHKPKGITSHDCINVLRNILHERRIGHAGTLDPLADGVLLIGIGQATR 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQ---LAAALDTFRGDIEQ 121 Y++ DK Y GQ+T T D +G I V E L F G I+Q Sbjct: 62 LLSYIVGHDKSYEASITFGQQTTTDDTEGDICASSLVPACVEDASYAQRVLRHFTGQIQQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH------EGNELELEIHCS 175 +P YSA+ G + Y RQG + R + VY+ + S Sbjct: 122 VPPAYSAISLGGIRAYNAVRQGTPLDLSPRSVCVYKAELSDITFEPSTHAPIWHVHFCVS 181 Query: 176 KGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAE 235 KGTYIR++ D+G AH+ L R + + +TL+ L++ + Sbjct: 182 KGTYIRSLARDIGLYAQTHAHLSALERSSSGSITIADCITLDELKK---------ESLSS 232 Query: 236 LLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE---GLVRVTEGENGKFI 292 L + +L P D D L T V G + L V K Sbjct: 233 LTNRILNPFD--VIDAARYMLGDTDLVDMSYGRSLTIRKNCLNDCANSQLVGCVYQNKLY 290 Query: 293 GMGEIDDEGRVA 304 G+ E D+ + Sbjct: 291 GIYERKDDKLIC 302 >UniRef50_C3JA73 tRNA pseudouridine synthase B n=6 Tax=Bacteria RepID=C3JA73_9PORP Length = 261 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 11/240 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRI------YNANRAGHTGALDPLATGMLPICLGEATK 64 + ++ +DKP +S D + + + + + GHTG LDP ATG+L +C G ATK Sbjct: 23 MGSIIAVDKPLDWTSFDVVNRFRIMVKQTVGLKKIKVGHTGTLDPKATGLLLLCTGRATK 82 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIP 123 + L+ + K Y + G T + D + P + L AL F G Q+P Sbjct: 83 QIEQLMLNRKEYVATLKFGATTPSFDLEHPEDAHYPYEHITQGMLEEALQEFLGTTLQVP 142 Query: 124 SMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTI 183 ++SA+ GK+ Y+ AR+G + E +PIT++EL + E L + C KGTYIR++ Sbjct: 143 PIFSAVSVGGKRAYDLARKGKDCQLEGKPITIHELEVVSFEPPYATLRVSCGKGTYIRSL 202 Query: 184 IDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMP 243 DLGE+L GA++ LRR + VE +TLE L + + AE E DP++ P Sbjct: 203 ARDLGERLQSGAYLTALRRTQLGNVRVEDSLTLEELPDFLAHAEL----NEEGFDPIVPP 258 >UniRef50_Q1NKV8 TRNA pseudouridine synthase B n=3 Tax=Deltaproteobacteria RepID=Q1NKV8_9DELT Length = 259 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 87/217 (40%), Positives = 127/217 (58%), Gaps = 4/217 (1%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGE-ATKFSQYLLDS 72 V+ LDKP G SS +Q V+R + GH G LDP A+G+L +C+G AT+ + L+ Sbjct: 13 VIPLDKPVGPSSFRLVQLVRRALGIKKVGHAGTLDPFASGLLLVCVGRGATRLVERLMAG 72 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPVTFSAE-QLAAALDTFRGDIEQIPSMYSALKY 131 DK Y +LG TDT D +GQ+ VT +L L FRG+I Q+P +SA+K+ Sbjct: 73 DKEYLATLQLGVATDTHDREGQVTATEEVTHEQLLRLQEVLFRFRGEILQVPPAFSAVKH 132 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDLGE 189 QG+ LY YAR+G + + R + ++EL + + L + + CSKGTYIR++ ++G+ Sbjct: 133 QGRPLYAYARRGEIIEKPPRRVKIHELTPLELDRRQRRLVIRVRCSKGTYIRSLAHEIGQ 192 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA 226 LGCGAH++ LRRLA + VE V + L E A Sbjct: 193 SLGCGAHLLELRRLASGPFRVEEAVPGDLLAEPATAA 229 >UniRef50_B3DQF2 tRNA pseudouridine synthase B n=6 Tax=Bifidobacterium RepID=TRUB_BIFLD Length = 387 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 88/381 (23%), Positives = 153/381 (40%), Gaps = 86/381 (22%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+L++DKPQG++S DA+ V+ + + GH G LDP+ATG L I G AT+ ++ Sbjct: 7 SGLLIIDKPQGVTSFDAVAAVRGALHIKKVGHAGTLDPMATGTLVIAFGHATRLLNAIVA 66 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDT----------------- 114 DK Y RLG RT T DA+G+++ + + L+A L Sbjct: 67 HDKTYEATIRLGLRTTTDDAEGEVLVDDEARSRWQTLSAQLTEGGQSGEPTALPTASWQD 126 Query: 115 ---------FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEG 165 F GDIEQ+P+ +SA+K G++ Y+ AR+G +V + RP+T+ E + Sbjct: 127 LLTRTIATNFTGDIEQVPNTFSAIKINGQRAYDLAREGKDVELKPRPVTISEFTVLDIRS 186 Query: 166 N-----------------------ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRR 202 ++++ I CS GTYIR + DLG++LG G ++ LRR Sbjct: 187 GFVAGEQTAEPLREDANTGAIPALDVDVRISCSSGTYIRALARDLGKELGVGGYLTRLRR 246 Query: 203 LAVSKYPV-ERMVTLEHLRELVE---------------------------------QAEQ 228 V ++ + + L +++ + Sbjct: 247 TRVGRFALPDDASGLIAPEAMLDTRTHTVTAHTDQKTFTNREGQTVTRNKCVLDTPEGLA 306 Query: 229 QDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGEN 288 D LLD L + P +++ + + G + + + + Sbjct: 307 GDERRNWLLDHALTMEQAARGAMPALDITPEEASELRFGRRIERT---ISEPTAAIVPQT 363 Query: 289 GKFIGMGEIDDEGRVAPRRLV 309 + E + + P + Sbjct: 364 HDVAAIIERANAHQAKPVTVF 384 >UniRef50_A0QIX1 tRNA pseudouridine synthase B n=93 Tax=Actinomycetales RepID=TRUB_MYCA1 Length = 309 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 96/307 (31%), Positives = 153/307 (49%), Gaps = 14/307 (4%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G++++DKP GM+S+D + + +RI+ R GH G LDP+ATG+L + + ATK L + Sbjct: 5 GLVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAA 64 Query: 73 DKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 K Y RLGQ T T DA+G +V +++ + AA+ RGDI Q+PS SA+K Sbjct: 65 AKSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 124 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRH----EGNELELEIHCSKGTYIRTIIDDL 187 GK+ Y+ R+G V ARP+ + E ++++E+ CS GTY+R + DL Sbjct: 125 AGKRAYKLVREGQAVELPARPVRIDRFEVRDLRAAGECVDVDVEVDCSSGTYVRALARDL 184 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 G LG G H+ LRR V ++ +E+ L+ L E + D + + D Sbjct: 185 GAALGVGGHLTALRRTRVGRFGLEQAYGLDELAECPRLSYSLDEACLLIFGRRDLSADEA 244 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 + L ++ + A ++G+ +G+ I + + DEG R Sbjct: 245 EAAGNGRALAAAAAGN-----GRALAAAGIDGVYAA-CAPDGRVIAL--LRDEG-ARTRS 295 Query: 308 LVVEYPA 314 +VV PA Sbjct: 296 VVVIRPA 302 >UniRef50_C8NZL8 tRNA pseudouridine synthase B (TRNA pseudouridine 55 synthase) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZL8_ERYRH Length = 277 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 92/298 (30%), Positives = 140/298 (46%), Gaps = 25/298 (8%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G+L ++KPQ M+S D + KV+++ + GH+G LDP+ATG+L + + +ATK YL Sbjct: 1 MDGILCINKPQEMTSFDVVAKVRKLLKV-KVGHSGTLDPMATGVLVLAVNQATKALPYLG 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 +DK YR +LG +T T D G + E+ + +S E + + G Q SA Sbjct: 60 LNDKTYRGKCKLGMKTSTGDIWGAVEEQASIPQYSREDVLTCFEKLTGPQTQRVPKVSAK 119 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K GKK YEY EV + IT+Y L I EG+E+E S GTYIRT+ +D+G Sbjct: 120 KINGKKSYEYVFNDEEVKQLYTDITIYNLELIALEGDEIEFRAFVSNGTYIRTLCEDIGM 179 Query: 190 KLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPAS 249 LG + L R V Y +E +TLE L + L+ + + Sbjct: 180 LLGTLGTMSALEREQVGPYTLENALTLEAL----------------TPETKLISVKDTIA 223 Query: 250 DYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRR 307 P + + Y KNG + E V + + G + + E + E R Sbjct: 224 -LPKI-VNPRMEDYVKNGKRLELD--IEEDQVLI---DTGTYYAVYEREHETTFKSVR 274 >UniRef50_C7N8V4 tRNA pseudouridine synthase B n=1 Tax=Leptotrichia buccalis C-1013-b RepID=C7N8V4_LEPBD Length = 355 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 169/343 (49%), Gaps = 47/343 (13%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++LL+K +G+SS A+ ++KR A +AGH G LDP+A G++ + + +ATKFS L+ Sbjct: 8 DGIILLNKSKGISSFKAIDELKRKIKAKKAGHAGTLDPMAEGLMVVMINDATKFSGDLMK 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y V LG +TDT D++G+++EE + S Q+ + +F+G I+Q+P MYSA+ Sbjct: 68 KDKEYYVEMELGYKTDTYDSEGKVIEEYKSEIELSDSQIIRTIHSFKGRIKQVPPMYSAI 127 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN-------ELELEIHCSKGTYIRT 182 K +G+KLY+ AR+GIE+ R R + + + I+ ++ H S GTYIR+ Sbjct: 128 KVEGQKLYDLARKGIEIERMPRDVEIMNIYKIKIHRPKENSSRIKISFYAHVSSGTYIRS 187 Query: 183 IIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH-------LRELVEQAEQQDIPAAE 235 ++ D+GEKL A + L R + + +E V+LE L+ELVE+ + + A Sbjct: 188 LVHDIGEKLKVFATMTKLVRTKIGRLSIEDAVSLEEVQSEIGKLKELVEEKRENESFWAT 247 Query: 236 LLDPLLMPMD----------SPASDYPVVNLPLTSSVYFKNGNPV--------------- 270 D + DY +N+ KNG V Sbjct: 248 KSDAAIRAEKIREIVCFVEIEYILDYYGINVSNEKYGKLKNGMTVIDTFKKFENIGKDIK 307 Query: 271 RTSGAPLEGLVRVT----EGENGKFIGMGEID--DEGRVAPRR 307 R ++ + + +F G+ +I R+ +R Sbjct: 308 RQEHIRENQKFKIYVRNRDTQKREFKGIVKIVSIRGNRIYLKR 350 >UniRef50_C8W716 tRNA pseudouridine synthase B n=2 Tax=Atopobium RepID=C8W716_ATOPD Length = 313 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 87/301 (28%), Positives = 136/301 (45%), Gaps = 21/301 (6%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +R IN ++ +DKP G++S+D + +V+R++ R GH G LDP A+G+L + +G ATK Sbjct: 2 KRGASGINALIAIDKPLGLTSHDVVSRVRRVFGEKRVGHAGTLDPNASGVLVVGIGLATK 61 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLA---AALDTFRGDIEQ 121 L K Y G RT T DADG++V V + A G I Q Sbjct: 62 LLGLLTLDRKGYVADISFGARTSTDDADGKVVATAAVPEELYDIEFARIACTKLVGTINQ 121 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-------LELEIHC 174 +P + SA+ GK+ Y+ R+G AR +++Y+ + + Sbjct: 122 LPPVVSAISVDGKRAYQLVREGKMPELVARRVSIYDASLLAVHTPSDKSDSLVWTVAFDV 181 Query: 175 SKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQA-EQQDIPA 233 SKGTYIR+I DLG+ LG AH+ LRR + V LE L + Q E + + Sbjct: 182 SKGTYIRSIARDLGQSLGTEAHISGLRRTFSGPITLGSCVLLEELEQSPAQILEAKHLNP 241 Query: 234 AELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIG 293 E L + + + ++Y V + + G P LV + E+ +G Sbjct: 242 TETLGYSVHRLTA--AEYKCVEVGK------RFGIPEDLCEIANNSLVSLVWNES--LVG 291 Query: 294 M 294 + Sbjct: 292 I 292 >UniRef50_B9MR51 tRNA pseudouridine synthase B n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR51_ANATD Length = 290 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 89/297 (29%), Positives = 144/297 (48%), Gaps = 36/297 (12%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +NGVLL+DKP G++S+D ++ V++++N +AGH G LDP ATG+L I LGEATK S + Sbjct: 1 MNGVLLVDKPVGITSHDVVEFVRKVFNV-KAGHAGTLDPFATGLLVILLGEATKLSSFFT 59 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 +K Y + G RTDT D G+I E+ V +++ +G+IE ++SA K Sbjct: 60 SQEKTYIATMQFGIRTDTLDITGKIKEKNSVIVEEKEIEECFKILKGEIELKVPIFSAKK 119 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGEK 190 G+KLYEYAR+GI + +Y + I LE ++ CS GTYIR++ + + E Sbjct: 120 LNGRKLYEYARKGINIEIPKVKSIIYNIEIINFSYPYLEFKVQCSHGTYIRSLAEKIAEN 179 Query: 191 LGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD 250 L + LRR+ + ++ VTL +R ++P+ + Sbjct: 180 LSTVGLLSELRRIRSGFFDLKDAVTLSDIRA-----------------ESIIPVCRLFKN 222 Query: 251 YPVVNLPLTSSVYFKNGNPV----------------RTSGAPLEGLVRVTEGENGKF 291 + + + NGNP+ ++ +V + + EN F Sbjct: 223 --EIKVGRKTYKKILNGNPLVNQDIEDIIDIDTVFADFYKIWVDKVVFIYKRENDVF 277 >UniRef50_D0RQI7 tRNA pseudouridine synthase B n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RQI7_9RICK Length = 297 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 75/302 (24%), Positives = 135/302 (44%), Gaps = 13/302 (4%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G + L KP G +S+ L +K+ + + GH G LDP+A G+LPI + EATK + Sbjct: 2 VHGWINLYKPTGFTSSYCLNVLKKKFKLKKIGHIGTLDPMAEGVLPIAINEATKTIPLIN 61 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 S K Y G++T+T D++G+I+ +T S E + A+ F G I Q P +SA K Sbjct: 62 KSKKTYFFEVNWGKQTNTLDSEGEIMNISKITPSYEDIKKAIKKFIGTINQSPPEFSAKK 121 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEGN--ELELEIHCSKGTYIRTIIDDLG 188 GK+ Y+ AR+G++ + +Y L + H+ N + + C GTY+R++ D+ Sbjct: 122 IDGKRAYQLAREGVKFELKKVKKKIYGLKILNHDFNNKKSLFVVSCESGTYVRSLAKDIA 181 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 +L + + RL + + L+ L + ++ + S Sbjct: 182 TELKTFCYCSKIVRLRDGIFRKKNSYALKTL---------INNENINDFFKYMLDIKSVL 232 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVR-VTEGENGKFIGMGEIDDEGRVAPRR 307 P + + KNG V + + + + +G + G P+R Sbjct: 233 YHIPTIEINDKKLKLIKNGMKVSMLEEVGSKEYKEILADYHQNVVALGSM-KNGVFYPKR 291 Query: 308 LV 309 ++ Sbjct: 292 IL 293 >UniRef50_Q2NBZ4 TRNA pseudouridine synthase B n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NBZ4_ERYLH Length = 362 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 157/369 (42%), Gaps = 78/369 (21%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNA-----NRAGHTGALDPLATGML 55 MS + +G ++LDKP+G+ S A+ VKR + GH G LDP A G+L Sbjct: 1 MSDLKPAP---HGWIILDKPRGLGSTQAVGAVKRNLREGGYAKTKVGHGGTLDPEAEGVL 57 Query: 56 PICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTF 115 PI LGEATK + +LD+ K Y + G+ TDT DA+G+I +AA L+ F Sbjct: 58 PIALGEATKLAGRMLDASKIYEFTVQFGEETDTLDAEGEITARSDRRPPMAAIAAVLEHF 117 Query: 116 RGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH-----------E 164 G+IEQ+P YSAL GK+ Y+ AR G EV + R +T+Y++ RH + Sbjct: 118 TGEIEQVPPKYSALMVDGKRAYDRARAGEEVELKTRRVTIYDISLSRHPREGGDPANLGD 177 Query: 165 GNELELEIHCSKG----------------------------------------------T 178 +E +L+ G T Sbjct: 178 HDESQLDPRLRGGDGVGFLADADLTSTFQTTSGRPDPYDPGAPLELADAITLTAHVSKGT 237 Query: 179 YIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLD 238 YIR++ D+ LG HV YLRR+ + + ++L+ L E+ + A L Sbjct: 238 YIRSLARDIARALGTVGHVTYLRRIKAGPFAEFQAISLDKLNEIGKGAP---------LQ 288 Query: 239 PLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEID 298 LL+P+++ D P + L S+ + G + +GL + + + E+ Sbjct: 289 DLLLPLEAGLDDIPALTLDSDSAQAVRQGRVLS-ELPQTDGLYLAKL--DDVPVALVELS 345 Query: 299 DEGRVAPRR 307 G R Sbjct: 346 G-GTARVVR 353 >UniRef50_B1GZN9 tRNA pseudouridine synthase B n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=TRUB_UNCTG Length = 230 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 90/210 (42%), Positives = 134/210 (63%), Gaps = 1/210 (0%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 +I+G+LLLDKP G++S DA+ K+K++ N + GH G LDP +TG+L + +G+ATK Sbjct: 7 NIDGLLLLDKPFGITSFDAVYKIKKVLNVEKTGHCGTLDPASTGLLLVLMGKATKLQAKF 66 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYSA 128 + DK Y LG TD+ D DG+++ E V + E++ ++ F G+I QIP MYSA Sbjct: 67 MKKDKVYLSSFLLGMVTDSGDLDGKVISENSVLNINIEKIKKMVEMFEGEIFQIPPMYSA 126 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLG 188 LKY GKKL E ARQGIEV R+ R +T+ + + ++G+ +++ I CS GTYIRT+ DLG Sbjct: 127 LKYNGKKLCELARQGIEVERKPRKVTIKKFEVLSYDGDIVKVRIECSSGTYIRTLAQDLG 186 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEH 218 L CGA V LRR + + ++ + + Sbjct: 187 NVLKCGATVKTLRREKIDIFDIKDALRFKD 216 >UniRef50_C2KR47 Possible tRNA-pseudouridine synthase I n=2 Tax=Mobiluncus mulieris RepID=C2KR47_9ACTO Length = 371 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 102/354 (28%), Positives = 148/354 (41%), Gaps = 62/354 (17%) Query: 13 GVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDS 72 G+L++DKPQG++SN L +V+RI + G+ G LDP+ATG+L LG+ATK QYL S Sbjct: 24 GLLVVDKPQGLTSNQVLSRVRRIAGQKKVGYAGTLDPMATGLLIFALGKATKLLQYLGSS 83 Query: 73 DKRYRVIARLGQRTDTSD-ADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKY 131 DK Y R G TDT D A + + LA +L +RG I Q+PS +SA+K Sbjct: 84 DKAYVARVRFGVSTDTDDAAGTVVGAAGAGGLTGSVLADSLGAYRGAIHQVPSSFSAIKV 143 Query: 132 QGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE------------------------ 167 G++ Y ARQG +V ++RP+T+ L Sbjct: 144 AGQRAYALARQGQDVKLKSRPVTISRLELESGLAPHEIDVSIGRAAQETTPRNPGGENPG 203 Query: 168 --------------------LELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSK 207 +++ + CS GTYIR + DLG LG GAH+ LRR V Sbjct: 204 ATGGGAALAAADGGRVTVADVDIAVECSAGTYIRALARDLGRDLGTGAHLTALRRTRVGN 263 Query: 208 YPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASD-YPVVNLPLTSSVYFKN 266 Y +E L L E V ++P+D+ +P + L T + Sbjct: 264 YGLEAARNLAELGEEVATQGIIS----------IIPLDAAVKALFPTLELDETQARALGY 313 Query: 267 GNPVRTSGAPL-----EGLVRVTEGENGKFIGMGEID-DEGRVAPRRLVVEYPA 314 G V + E G+ I + + + + V PA Sbjct: 314 GQTVTLPSPSPALYNNNQPLAAALDEAGQVIALVTPRVGDTAIRVKPTWVLRPA 367 >UniRef50_C9MUE6 tRNA pseudouridine synthase B n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MUE6_9FUSO Length = 358 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 94/336 (27%), Positives = 163/336 (48%), Gaps = 48/336 (14%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G++LL+K +G+SS A+ +K++ A + GH G LDP+A G++ + + EATKFS L+ Sbjct: 8 DGLILLNKSKGVSSFGAINHLKKVIKAKKVGHAGTLDPMAEGLMIVMINEATKFSDNLMK 67 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEE--RPVTFSAEQLAAALDTFRGDIEQIPSMYSAL 129 DK Y V LG +T T D +G ++ + + S ++ A+++F+G I+Q+P MYSA+ Sbjct: 68 KDKEYYVEMELGYKTGTYDLEGTVIAKYDSEINISDSEIIKAVNSFKGKIKQVPPMYSAI 127 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE----------LELEIHCSKGTY 179 K +G+KLY+ AR+GIEV R R + + E+ I+ + + + S GTY Sbjct: 128 KIEGQKLYDLARKGIEVERAERDVEISEIREIKVIRPDKNSENVQNIKISFYVKVSSGTY 187 Query: 180 IRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLE-------HLRELVEQAEQQDIP 232 IR+++ D+GEKLG A + L R + ++ +E ++LE L+ L+E + + Sbjct: 188 IRSLVYDIGEKLGVFATMTRLVRTKIGRFEIEDAISLEKAKAEIDKLKNLMEGKTENESF 247 Query: 233 AAELLDPLLMPMD----------SPASDYPVVNLPLTSSVYFKNGNPV------------ 270 A D + DY +N+ KNG V Sbjct: 248 WATKNDSAIRAEKIREIVCFVEIEYVLDYYGINVSNVKYGKLKNGMTVIDTFKKFENISK 307 Query: 271 ---RTSGAPLEGLVRVTEGENG----KFIGMGEIDD 299 + + ++ +F G+ +I + Sbjct: 308 EASKGANVRENQKFKIYVRNKNTNVREFKGIVKIVN 343 >UniRef50_C7M8Y8 tRNA pseudouridine synthase B n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M8Y8_CAPOD Length = 558 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 13/228 (5%) Query: 1 MSRPR--RRGRDINGVLLLDKPQGMSSNDALQKVKRI------YNANRAGHTGALDPLAT 52 M P R GR +LL+DKP SS A+ K+K + GH G LDPLA+ Sbjct: 1 MITPEELREGR----ILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIKIGHAGTLDPLAS 56 Query: 53 GMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAA 111 G+L IC G+ TK + D+ K Y +G T + D + +I P + E + Sbjct: 57 GLLVICTGKFTKKITEIQDAVKTYTGTITVGATTPSYDKETEINAHYPTDHITPELIEQV 116 Query: 112 LDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELE 171 F G++ Q P ++SA+K +GK+LYE+AR G E+ R I +Y + +L+ E Sbjct: 117 RMQFIGELTQTPPVFSAIKKEGKRLYEFARDGKEIEVPQRTIYIYSFNIDASQFPKLQFE 176 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHL 219 + CSKGTYIR++ +D G+ LG G ++ LRR + + V +T + Sbjct: 177 VVCSKGTYIRSLANDFGKALGSGGYLSALRRTKIGDFSVNDALTPDEF 224 >UniRef50_Q319E0 tRNA pseudouridine synthase B n=8 Tax=Prochlorococcus marinus RepID=TRUB_PROM9 Length = 307 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 80/313 (25%), Positives = 158/313 (50%), Gaps = 24/313 (7%) Query: 10 DINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYL 69 + +G L+++K +G +S+D +++++++ N + GHTG LDP G LPI +G AT+F QYL Sbjct: 3 NKDGFLVINKDKGCTSHDCVKQIRKLLNTRKVGHTGTLDPEVIGTLPIAIGSATRFIQYL 62 Query: 70 LDSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSA 128 K Y +LG RT+T D G+I+ ++ S E+L L+ FRG I+QIP S+ Sbjct: 63 PQG-KTYIGQIKLGIRTNTDDIHGEIINQKCWPKISDEKLDQYLNKFRGLIKQIPPKVSS 121 Query: 129 LKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE--LELEIHCSKGTYIRTIIDD 186 + G++ Y+ + R + + EL+ ++ + +EL+I+CS GTYIR I D Sbjct: 122 VHVNGERAYKKSFNNENFELAPREVKIDELILMKWDQINGIIELKINCSAGTYIRAIARD 181 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDS 246 LGE L ++ L+R++ + + + + +++ ++Q + ++P S Sbjct: 182 LGEILNSEGCLLQLKRISACGFHEKNSIKISDIKKGIDQKNASN---------FIIPTIS 232 Query: 247 PASDYPVVNLP-LTSSVYFKNGNPVRTS--------GAPLEGLVRVTEGENGKFIGMGEI 297 + + L +++ G ++ + ++V + +G+G + Sbjct: 233 ALNHISTLILNKEEDINFWQTGRAIKFDINYFNEGNNFDNKKPIKVVDKRK-MLLGIGFL 291 Query: 298 DDE-GRVAPRRLV 309 + E + P+ ++ Sbjct: 292 NKELTNINPKLVL 304 >UniRef50_C8WI31 tRNA pseudouridine synthase B n=2 Tax=Coriobacteriaceae RepID=C8WI31_EGGLE Length = 340 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 105/332 (31%), Positives = 150/332 (45%), Gaps = 25/332 (7%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R +R ++ V+ ++KP GMSS+D + + + I+ R GHTG LDP+ATG+LPIC+G Sbjct: 1 MPRVKRGLSGLSLVVGVNKPAGMSSHDVVNRCRSIFGERRVGHTGTLDPMATGVLPICVG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT---FSAEQLAAALDTFRG 117 AT+ YL DKRYRV G TDT DA G +V V E AA + + G Sbjct: 61 PATRLGAYLTGHDKRYRVSIAFGAGTDTDDAAGTVVRTGEVPDRVLDPEFAAAFVASLVG 120 Query: 118 DIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH------EGNELELE 171 +Q+P YSA+K GKK YE AR G + R I VY+ + E ++ Sbjct: 121 RRKQMPPAYSAIKVNGKKSYEAARAGNIIDLAPRDIEVYDARLLGVHEGDGEELPSWDVS 180 Query: 172 IHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDI 231 SKGTYIR++ D G LGC AHV L R + +E V+LE L +L ++A + Sbjct: 181 FEVSKGTYIRSLARDAGVALGCPAHVAALERTELGLLTLEECVSLETLADLKDRAALDPV 240 Query: 232 PAAELLDPL----LMPMDSPASDYPVVNL-------PLTSSVYFKN--GNPVRTSGAPLE 278 + L + + P L ++ G Sbjct: 241 RLLGVRFSYAQGDLAKKVANGAQLPAAELPLFERRRTTSAIEMCACTAGVRESCEPPRDG 300 Query: 279 GLVRVTEGENGKFIGMGEIDD-EGRVAPRRLV 309 LV V + K + + D+ R R + Sbjct: 301 ELVAVLT--DNKLVALYAYDEGRARFETRCVF 330 >UniRef50_D0NZ97 tRNA pseudouridine synthase B, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NZ97_PHYIN Length = 319 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 151/335 (45%), Gaps = 51/335 (15%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLL 70 ++G L + KP G++S+ + ++R+ + + GH G LDP+ATG+L + +G AT+F QYL Sbjct: 1 MSGFLNVRKPAGLTSHRCVGVMRRVLDTRQVGHGGTLDPMATGVLMLAVGRATRFLQYLT 60 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 + K YR RLG TD+ D G + + P S E + L F G+I+Q+P SA+ Sbjct: 61 -TGKEYRGAIRLGITTDSDDITGDVRTQLPAPWISEEMVNMTLQRFIGEIDQVPPRVSAI 119 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDLGE 189 K G +LY+ AR + + R + + ++ + E+ GTYIR+I + GE Sbjct: 120 KKNGVRLYKLARAKKDFDVKPRRVCIKKIDVQSFTQGDFP-EV---GGTYIRSIARECGE 175 Query: 190 KL--------------------GCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 L G + L R + + + + +R ++E+ E Sbjct: 176 ALIVPPEYLDSTCKLRNSVGDFCVGGTLTELERTRSGAFAIADSLDFDEIRSMLERGESP 235 Query: 230 DIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLE----GLVRVTE 285 L P+++ P LPL ++ Y+ NG V +E ++T Sbjct: 236 -----------LQPIENMLQHLPSAELPLQTAQYWLNGGTVTIPAEDIEFVDHNYYKLTS 284 Query: 286 GENGKF------IGMGEIDDEGRVAP----RRLVV 310 GE + +G+ ++D + + +RL + Sbjct: 285 GEPIRIYSSSTMLGIAQVDPQPQYKEVFLRKRLFI 319 >UniRef50_D2NNU2 Pseudouridine synthase n=2 Tax=Rothia mucilaginosa RepID=D2NNU2_9MICC Length = 365 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 133/303 (43%), Gaps = 38/303 (12%) Query: 5 RRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATK 64 +++ + +G++++DKP GMSS+DA+ +++RI R GH G LDP ATG+L + + +ATK Sbjct: 3 KKQPQGPSGLMVIDKPAGMSSHDAVSQMRRIAGTRRVGHAGTLDPAATGVLILGINKATK 62 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFS----------AEQLAAALDT 114 YL+ DK Y RLG T T DA+G+ P ++ A+ Sbjct: 63 LLTYLVGQDKTYDATIRLGIETLTEDAEGEHTAAHPDAVEALTGMDAEQMRARILEAVAQ 122 Query: 115 FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNEL------ 168 GDI Q+PS SA+K G + Y R G +V ARP+T+ E Sbjct: 123 LSGDILQVPSAVSAIKINGVRSYARVRSGEQVELVARPVTISEFTVHSVTAGFAEYVIED 182 Query: 169 -----------------ELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVE 211 ++ + CS GTYIR + DLG+ LG G H+ LRR V +E Sbjct: 183 PENEGEHMATSVPVIDCDVTVSCSSGTYIRALARDLGKILGTGGHLTALRRTRVGAVVLE 242 Query: 212 RMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVR 271 L L++ E++E L + + L + G + Sbjct: 243 DAADLAQLKQRREESEAPLEDLPLLPLEE-----AARRIFGARELSAAEASDISYGRRIS 297 Query: 272 TSG 274 SG Sbjct: 298 PSG 300 >UniRef50_B0MTY5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MTY5_9BACT Length = 240 Score = 250 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 6/222 (2%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKFSQY 68 + ++DKP +S+D ++K+K + GH G LDPLATG+L +C+G+ATK + Sbjct: 19 IAVIDKPLEWTSSDVVRKIKFALRRAGYPKIKVGHAGTLDPLATGILLVCIGKATKMADA 78 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 L +K Y LG T + D + I P + E + L + G+ Q P +YS Sbjct: 79 LQAEEKEYVADLMLGATTPSFDLEHPIDRTYPFEHITREAVEEVLRSLTGERLQTPPLYS 138 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDDL 187 A K +G + YE AR G EV I +YE+ + ++ + + + CSKGTYIR++ ++ Sbjct: 139 AKKVEGVRAYELARAGEEVELRKALINIYEMELMEYDLPRIRIRVRCSKGTYIRSLAGEI 198 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQ 229 G+ LG GAH+ L R + ++ L E +++AE + Sbjct: 199 GQALGSGAHLTSLCRTRSGGFRLDAAHELNFFLEKLQKAETK 240 >UniRef50_C8PR21 tRNA pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PR21_9SPIO Length = 372 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 89/367 (24%), Positives = 148/367 (40%), Gaps = 73/367 (19%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M +P + ++ KP G++S +L +VK + GHTG LD A G+L + G Sbjct: 1 MPKPEPQF-----IIPFAKPSGITSFTSLWQVKHALGTKKVGHTGTLDSFADGLLVLLSG 55 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE 120 + TK Y+ D DK YRV+ G+ TDT D +G +++E+P+ + +A+ G IE Sbjct: 56 KLTKLVPYITDFDKTYRVLFYFGKETDTLDPEGTVIDEKPLPV-YADVVSAIRQLTGTIE 114 Query: 121 QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELE----------- 169 Q+P +YSA+K G++L + R+G V R +T+Y + E+ Sbjct: 115 QVPPVYSAVKQAGERLSDRIRRGETVSVPPRTVTIYSIDIEEIFYEEVSAVPADAAGGNK 174 Query: 170 ------------------------------LEIHCSKGTYIRTIIDDLGEKLGCGAHVIY 199 L + CSKGTYIR+++ D+ + G A+V Sbjct: 175 AAIHADGTDRDTVGIDPLDAANDKTVTGAVLCVRCSKGTYIRSLVRDIAHRCGSAAYVYA 234 Query: 200 LRRLAVSKYPVERMVTLEHLREL-------------------VEQAEQQDIPAAELLDPL 240 LRR AV + +E+ L+ + A + + Sbjct: 235 LRRTAVGPFTLEQAAGFSALQPFGNAAAHAVDADSTDTPAGCADSAAVPHPVTDDAIKQA 294 Query: 241 LMPMDSPAS---DYPVVNLPLTSSVYFKNGNPVR----TSGAPLEGLVRVTEGENGKFIG 293 +P+ + + + L F NG P+ TS PL + T G +G Sbjct: 295 ALPLSETLARAMHFQMAALKEQYYAAFMNGKPISGHWFTSEQPLSDIGTATVFYEGCCVG 354 Query: 294 MGEIDDE 300 + + Sbjct: 355 LMTKNGN 361 >UniRef50_D0WR19 tRNA pseudouridine synthase B n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WR19_9ACTO Length = 345 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 85/267 (31%), Positives = 134/267 (50%), Gaps = 19/267 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ ++DK G++S+D + V+R+ + GH G LDP+ATG+L I LG ATK +Y+ Sbjct: 14 DGLAVIDKDPGVTSHDVVGAVRRLAGTKKVGHAGTLDPMATGVLCIGLGRATKLLRYVTG 73 Query: 72 SDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRGDIEQIPSMYSALK 130 + K Y R G T T DA G++V A +LA A+ G++ Q+PS SALK Sbjct: 74 TAKEYEATIRFGIETSTEDAQGELVRARGAREADAAELARAMANLTGEVLQVPSSVSALK 133 Query: 131 YQGKKLYEYARQGIEVPREARPITVYELLFIRHEG---------NELELEIHCSKGTYIR 181 +G++ Y+ R+G EV +ARPI V + +L++ + C GTY+R Sbjct: 134 VEGRRAYDLVREGREVVLDARPIRVDVFEAVGGPRFAEACGAPVFDLDVRVVCGAGTYVR 193 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 + DLGE LG GAH+ LRR V + V V++ + VE Q + Sbjct: 194 ALARDLGEALGFGAHLTSLRRTRVGPWDVGEAVSVRECADAVEADGQMPVHTLA------ 247 Query: 242 MPMDSPASDYPVVNLPLTSSVYFKNGN 268 D + +P + + ++ + G Sbjct: 248 ---DLCRAMFPALEVSEQAARDLRMGR 271 >UniRef50_C9RKT6 tRNA pseudouridine synthase B n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKT6_FIBSS Length = 318 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 98/328 (29%), Positives = 142/328 (43%), Gaps = 52/328 (15%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G +LLDK G +S AL +KR++ R GH G LD A+G++ G AT+ Y+ Sbjct: 4 SGFVLLDKIAGETSFKALFPLKRVFCTKRVGHAGTLDLRASGLIIAATGRATRLLPYIEA 63 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERP----------------VTFSAEQLAAALDTF 115 DK Y LG TDT + DG++VE+ + + L A L F Sbjct: 64 KDKCYTFRLHLGYETDTLEWDGKVVEQDKMGCHPGAEGDRIQCGVPSVTRADLEAVLPQF 123 Query: 116 RGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELL----------FIRHEG 165 GDI+Q+P YSA+K G + + A +G E+ + R I + L Sbjct: 124 IGDIDQVPPNYSAVKIDGHRASDLANRGREIELKPRRIHIESLKVVGEGLVTEGCTGKSF 183 Query: 166 NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 +LE +CSKGTYIR++ DL LG V +RR + V+R V + L Sbjct: 184 ATFDLECNCSKGTYIRSLGRDLARALGTCGCVSMIRRHRIGDVTVDRAVRGDALTP---- 239 Query: 226 AEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVR-------TSGAPLE 278 L+P+D D+PVV L + GN V S P Sbjct: 240 -------------EHLLPVDQVL-DFPVVRLNDDQVKAIRLGNWVPWRTPVENLSTTPGA 285 Query: 279 GLVRVTEGENGKFIGMGEIDDEGRVAPR 306 T ++G IG+G + D GR+ P+ Sbjct: 286 EKFVFTADKDGAVIGLG-VYDPGRICPK 312 >UniRef50_Q14NU4 Putative trna pseudouridine synthase b protein n=1 Tax=Spiroplasma citri RepID=Q14NU4_SPICI Length = 303 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 143/297 (48%), Gaps = 23/297 (7%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +G+ L++KP G +SN +Q++K+ N+ GH G LDPLATG+L + + ATK S+YLL Sbjct: 3 DGIFLINKPTGKTSNQVIQEIKQKLEINKIGHAGTLDPLATGLLVVLINNATKMSEYLLT 62 Query: 72 SDKRYRVIARLGQRTDTSDADGQIV-EERPVTFSAEQLAAALDTFRG-DIEQIPSMYSAL 129 +DK Y V RL TDT D G ++ + P + L + F G EQ P YSA+ Sbjct: 63 ADKAYDVEMRLFIETDTGDITGNVLNKTAPFKIQKKVLKKIFNEFNGFMYEQYPPKYSAI 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHE--GNELELEIHCSKGTYIRTIIDDL 187 K GKKLYEYARQ EV + R +T+ + +++ + ++ + C+KGTYIR+++ D+ Sbjct: 123 KVNGKKLYEYARQDKEVKIKPRTVTIKAIKLKKYDAHNHTIKFSVLCTKGTYIRSLVTDI 182 Query: 188 GEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSP 247 KL A V L R + + + ++ E + + L+ D+ Sbjct: 183 AAKLNTIATVTALCRTQSGNFLLSKAISPETVN----------------FNELISMYDAL 226 Query: 248 ASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 ++ + L + G P+ + +N + + + + A Sbjct: 227 FTNNQQLLLYHHD-EEIRQGKPIVI--IKHTDPIIFIIDKNKNVLAIYKHIGKHVYA 280 >UniRef50_A4S143 Predicted protein n=3 Tax=Mamiellales RepID=A4S143_OSTLU Length = 279 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 125/232 (53%), Gaps = 7/232 (3%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIY---NANRAGHTGALDPLATGMLPICLGEATKFSQY 68 N +L+DKPQ +S D + +V+R+ + GH G LDP+ATG+L +C+G+ATK + Sbjct: 45 NMTILMDKPQKYTSFDVVARVRRLSRERGVKKVGHCGTLDPMATGLLILCVGKATKSVEE 104 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 DK Y +LG+ T + DAD ++ E P + +L G I+Q+P MYS Sbjct: 105 YSGMDKTYTGTIKLGEGTPSQDADEEVNEREPWEHVTDVELREGARKLTGAIKQLPPMYS 164 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIR--HEGNELELEIHCSKGTYIRTIID 185 A+K GK+LY+ AR+G+EV R+ R + ++E R + + H SKGTY+RT+ Sbjct: 165 AIKVNGKRLYKSAREGVEVERKHRDVVIHEFEVERDAEDAQIVHFSAHVSKGTYVRTLAY 224 Query: 186 DLGEKLGCGAHVIYLRRLAVSK-YPVERMVTLEHLRELVEQAEQQDIPAAEL 236 DL + LG H+ LRR + + VE T+E L E + + + Sbjct: 225 DLCKSLGTTGHLTALRRTKIGSEFDVEDAWTIEQLAEACGEDPSKFKKTPKK 276 >UniRef50_A6GK85 TruB (Fragment) n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GK85_9DELT Length = 385 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 150/370 (40%), Gaps = 59/370 (15%) Query: 1 MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG 60 M R R+ GVLL+DKP+G +S+D + V+ GH G LDP A+G+L +C+G Sbjct: 1 MGRKRKAESRYTGVLLVDKPEGPTSHDVVGWVRWALGERSVGHCGTLDPPASGLLVVCVG 60 Query: 61 EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFS-AEQLAAALDTFRGDI 119 E TK L DKRY +G+ T T+D G+ + PV + E+ ++ RG + Sbjct: 61 EGTKLVDALTSVDKRYWTRLVIGRSTTTADGAGETLTTAPVDAAMLERARELVEALRGPL 120 Query: 120 EQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFI-------------RHEGN 166 E P YSA+K GK+ + AR G V RP+ V+ L + E Sbjct: 121 ELPPPAYSAVKVDGKRAHALARAGELVELPKRPMAVHALTVLGAGLEPAAATGEDEGEQG 180 Query: 167 ELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVER--------MVTLEH 218 +ELE+ +KGTYIR++ ++LG +LGC AH+ LRRLA V+ L Sbjct: 181 WIELELRVAKGTYIRSLAEELGRRLGCPAHMARLRRLACGPLTVDDPGAVGGLIAQELPP 240 Query: 219 LRELVEQAEQQDIPAA--------------ELLDPLLMPMDSPASDYPVVNLPLTS---- 260 + + PA E L+ L P V L + Sbjct: 241 REGAPPRWRVELPPADPPVTDNDARRARAREWLESRLRAPWRDLP-MPAVMLDADASEAA 299 Query: 261 ------SVYFKNGNPVR----------TSGAPLEGLVRVTEGENGKFIGMGEIDDEG--R 302 +G + V G + + E D++G R Sbjct: 300 EERAKLVERLLHGQRLPLHPTMRARLGLENVAGGPCALVHLGLQVMILAVVESDEDGDTR 359 Query: 303 VAPRRLVVEY 312 + P R+V Sbjct: 360 LQPTRIVRLR 369 >UniRef50_C1XV12 tRNA pseudouridine synthase B n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XV12_9DEIN Length = 322 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 91/341 (26%), Positives = 133/341 (39%), Gaps = 68/341 (19%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSD 73 + +DKP G++S+D + +R R GHTG LDPLATG+L + +TK +L D Sbjct: 3 LFAVDKPLGITSHDVVDAARRRLGTRRVGHTGTLDPLATGVLILASNSSTKLVPFLSAED 62 Query: 74 KRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIEQIPSMYSALKYQG 133 K Y G T+T DA+G + E PV FS + L L F EQ+P YSA+K G Sbjct: 63 KEYLAWVSFGATTETLDAEGPVTAEAPVRFSKKDLETTLPHFLSLTEQVPPAYSAVKIGG 122 Query: 134 KKLYEYARQGIEVPREARPITVYELLFIRHEG---------------------------- 165 K YE AR+G + RP+ E+ + E Sbjct: 123 VKAYEAARKGESLELTPRPVKYLEVTLLAFEPAPKTYRIGPSPNGWEITPVKGRQAPGDA 182 Query: 166 -----------------NELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKY 208 + + GTY+R DLGE LG A + L R V + Sbjct: 183 GTQRGRLVQLPRALGTYPTAVIRLVVGSGTYVRAFARDLGELLGTKAFLSGLVRTRVGRV 242 Query: 209 PVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGN 268 +ER V LE + E Q + +P+V L G Sbjct: 243 GLERCVPLEKIDPEHPLEETQAL------------------SFPLVQLSHAEVKRVLEGV 284 Query: 269 PVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLV 309 P+ P +G V + + + I + E D ++ +R+ Sbjct: 285 PLP---IPAQGYVALVDNRR-QLIAIAE-GDGFKLKIKRVF 320 >UniRef50_D1PGN2 tRNA pseudouridine synthase B n=2 Tax=Prevotella RepID=D1PGN2_9BACT Length = 238 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 8/225 (3%) Query: 14 VLLLDKPQGMSSNDALQKVKRIYNAN-----RAGHTGALDPLATGMLPICLGEATKFSQY 68 ++ +DKP MSS AL V+ + + + GH G LDPLATG+L +C G+ TK + Sbjct: 8 IIAIDKPYRMSSFGALAHVRYLLSKKLGFKVKIGHAGTLDPLATGVLVLCTGKCTKQIEQ 67 Query: 69 LLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMYS 127 L K Y +LG T + D + + P + + + L F G+I+Q+P YS Sbjct: 68 LQTHTKEYTATLQLGATTASYDKEHSVNHTYPTEHITRQLVEETLKQFVGEIQQVPPTYS 127 Query: 128 ALKYQGKKLYEYARQGIEVPREARPITVYELLFIRH--EGNELELEIHCSKGTYIRTIID 185 A+K G + Y R G EV + + + V E+ + E + + C KGTYIR++ Sbjct: 128 AVKVNGDRSYALRRAGEEVQLKPKTVRVDEIELTDYNDEEKTASIRVVCGKGTYIRSLAR 187 Query: 186 DLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQD 230 D+G L GA++ LRR + VE ++ +H +E +++ +D Sbjct: 188 DIGRALDSGAYLTALRRTKAGSFAVENCISFDHFQEWLDEQPLED 232 >UniRef50_A6LEL7 tRNA pseudouridine synthase B n=49 Tax=Bacteroidetes RepID=TRUB_PARD8 Length = 235 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 120/219 (54%), Gaps = 7/219 (3%) Query: 14 VLLLDKPQGMSSNDALQKVK----RIYNANR--AGHTGALDPLATGMLPICLGEATKFSQ 67 +L +KP +S D + K + R + GH G LDPLATG++ +C G ATK Sbjct: 8 ILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKRID 67 Query: 68 YLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV-TFSAEQLAAALDTFRGDIEQIPSMY 126 K Y +LG+ T + D + +I P + E + L TF G I+QIP ++ Sbjct: 68 EFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPPVF 127 Query: 127 SALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTIIDD 186 SA K +GK+ YE AR+G EV +++ + + EL + + +++ + CSKGTYIR + D Sbjct: 128 SACKVEGKRAYELARKGEEVELKSKTLVIDELELLECDLPVIKIRVVCSKGTYIRALARD 187 Query: 187 LGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQ 225 +G+ LG GAH+I L R + + ++ ++ E + + +EQ Sbjct: 188 IGKALGSGAHLIGLERTRIGEVTLDMCMSPEEIDDFLEQ 226 >UniRef50_C1A8P0 tRNA pseudouridine synthase B n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8P0_GEMAT Length = 310 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 89/306 (29%), Positives = 125/306 (40%), Gaps = 21/306 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLD 71 +GVL +DKP G SS+D + V+R R GH G LDP ATG+L I +G AT+ Y++ Sbjct: 15 SGVLYVDKPAGRSSHDMVGVVRRAARTRRVGHAGTLDPFATGLLVIAVGTATRLLPYIVG 74 Query: 72 SDKRYRVIARLGQRTDTSDADGQIVEERPVT-------FSAEQLAAALDTFRGDIEQIPS 124 K Y + G T+T D G +V E PV AA G I QIP Sbjct: 75 EPKVYDATIQFGADTNTDDGTGIVVREAPVPDAAVLADPVHAVRLAAEAILTGHITQIPP 134 Query: 125 MYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIRTII 184 YSA G + Y+ AR+G V P+ V + + L++ I C GTYIR + Sbjct: 135 QYSAKHVDGVRAYDLARRGEVVDLAPVPVHVRGWEWRGASESTLDVRITCGGGTYIRALA 194 Query: 185 DDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPM 244 DLG LG AH LRR+ V+ V+ + L + + L Sbjct: 195 RDLGRALGSAAHCSVLRRVQSGPASVDHAVSFDALA----------PGSVIDGEVPLRSP 244 Query: 245 DSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDEGRVA 304 D L V + G + + + V G +G R Sbjct: 245 LELLGDMATQILDEEGLVALRFGRTLEATVPGAQ----VALLHEGAIAALGVRTAGDRWQ 300 Query: 305 PRRLVV 310 PR +++ Sbjct: 301 PRVVLI 306 >UniRef50_C0QZ24 Pseudouridylate synthase n=2 Tax=Brachyspira RepID=C0QZ24_BRAHW Length = 295 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 71/300 (23%), Positives = 126/300 (42%), Gaps = 27/300 (9%) Query: 11 INGVLLLDKPQGMSSNDALQKVKRIYN------ANRAGHTGALDPLATGMLPICLGEATK 64 + G +L+KP G++S DA+++ K I R GH G LDP A G+L + G TK Sbjct: 1 MKGFCILNKPVGITSFDAIKQTKIILKQKENILEKRVGHAGTLDPFADGVLILAFGRYTK 60 Query: 65 FSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPV--TFSAEQLAAALDT-FRGDIEQ 121 D +K Y G+ DT D +G ++ S E+L + T F+G+I+Q Sbjct: 61 LFFLFDDLNKEYIASGIFGESRDTDDIEGNTIKTSNNNNKLSFEELENIIKTNFKGNIKQ 120 Query: 122 IPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYIR 181 P +YSA K GK+ Y+ AR + + + ++ + ++ +++ SKGTYIR Sbjct: 121 KPPIYSAKKINGKRAYDLARDNKSFELKDVDVCIEKIELLEYDYPYFKIKTSVSKGTYIR 180 Query: 182 TIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLL 241 +II D+GE G A+ L+R+++ Y ++ +E + + Sbjct: 181 SIIRDIGEITGNLAYTKELKRVSIGNYNIDMSCNIEDIN-----------------KNKI 223 Query: 242 MPMDSPASDYPVVNL-PLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE 300 + ++ + + GN + + + E + E Sbjct: 224 LSFFYMFKNFDKTIIEDASDIRQILCGNTKTIEKIKVNNKYMALTDNKNNLLAIIEKNIE 283 >UniRef50_D1BAB8 tRNA pseudouridine synthase B n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB8_THEAS Length = 301 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 89/302 (29%), Positives = 141/302 (46%), Gaps = 21/302 (6%) Query: 12 NGVLLLDKPQGMSSNDALQKVKRIYNAN-RAGHTGALDPLATGMLPICLGEATKFSQYLL 70 +G LL+DK +G+ S ++ V+R + + GH G LD A+G+L +G AT+ S ++ Sbjct: 3 SGFLLIDKEEGLRSTACVEAVRRSLGRDFKVGHAGTLDSGASGLLVALVGRATRLSNLVM 62 Query: 71 DSDKRYRVIARLGQRTDTSDADGQIVEERPVT-FSAEQLAAALDTFRGDIEQIPSMYSAL 129 K YR + RLG RTDT D G+I++ PV + A L+ L +F G Q P SA+ Sbjct: 63 SFSKEYRALVRLGIRTDTEDITGRILDRCPVPRWDAGDLSRVLASFLGCRLQRPPAVSAV 122 Query: 130 KYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNE-LELEIHCSKGTYIRTIIDDLG 188 G++ +E AR G E R + V + G + + + + C KGTY+R+I DLG Sbjct: 123 HVGGRRAHELARSGEEPNIVPREVFVRRIEVGEMLGPDVVSIRVSCGKGTYVRSIARDLG 182 Query: 189 EKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPLLMPMDSPA 248 E+LG + LRR +V + VE + + EL + L L+P++ Sbjct: 183 ERLGTWGTIERLRRTSVGPFRVEDALPSGQMGELGTRD----------LLSRLIPLERLG 232 Query: 249 SDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFI-------GMGEIDDEG 301 P +P NG +R VR G + G+ ++ +G Sbjct: 233 EFLPGGRVPAELDALCSNGGAIRIRDL-EAFSVRAPYVSGGLVLVRYSRGMGIYQLVGDG 291 Query: 302 RV 303 R+ Sbjct: 292 RL 293 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.155 0.442 Lambda K H 0.267 0.0473 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,144,577,423 Number of Sequences: 3077464 Number of extensions: 99502698 Number of successful extensions: 230984 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1180 Number of HSP's successfully gapped in prelim test: 51 Number of HSP's that attempted gapping in prelim test: 227214 Number of HSP's gapped (non-prelim): 1408 length of query: 314 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 186 effective length of database: 646,480,964 effective search space: 120245459304 effective search space used: 120245459304 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 93 (40.2 bits)