18/01/2012 22:54:24 : INFO  : Run start: Wed Jan 18 22:54:22 GMT 2012
18/01/2012 22:54:34 : INFO  : Initialised job
18/01/2012 22:54:38 : INFO  : Renaming log file 'phyre2_20120118_225421.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/1178dd69661e9c4d/phyre_20120118_225421.log'
18/01/2012 22:54:40 : INFO  : Initialised job:
Sequence
>batch____
MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLG
EATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDTFRGDIE
QIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEIHCSKGTYI
RTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPAAELLDPL
LMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAPLEGLVRVTEGENGKFIGMGEIDDE
GRVAPRRLVVEYPA

18/01/2012 22:54:42 : INFO  : Checked sequence
18/01/2012 22:54:48 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 22:54:50 : INFO  : PSI-BLAST 3 iterations
18/01/2012 22:56:37 : INFO  : PSI-BLAST 5 iterations
18/01/2012 22:57:51 : INFO  : Finished PSI-BLAST
18/01/2012 22:57:56 : INFO  : Running Buildali to generate a3m file
18/01/2012 23:07:28 : INFO  : Converting to HMM
18/01/2012 23:07:33 : INFO  : Calibrating HMM
18/01/2012 23:07:54 : INFO  : Searching HMM database
18/01/2012 23:13:41 : INFO  : Finished buildali
18/01/2012 23:13:44 : INFO  : Predicting secondary structure
18/01/2012 23:13:59 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 23:14:02 : INFO  : Predicting Disordered regions
18/01/2012 23:14:10 : INFO  : Predicted Disorder (Disopred)
18/01/2012 23:14:14 : INFO  : Running memsat_svm check
18/01/2012 23:18:40 : INFO  : Globular protein
18/01/2012 23:18:42 : INFO  : Predicted Transmembrane (memsat_svm) ID '1178dd69661e9c4d'
18/01/2012 23:18:45 : INFO  : Initialising fold library search
18/01/2012 23:18:52 : INFO  : Initialised search input
18/01/2012 23:18:57 : INFO  : Building Ensemble models
18/01/2012 23:19:03 : INFO  : Building hh.c1k8wA_.model.1.pdb
18/01/2012 23:19:33 : INFO  : Building hh.d1k8wa5.model.2.pdb
18/01/2012 23:19:57 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/1178dd69661e9c4d/hh.d1k8wa5.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/1178dd69661e9c4d/d1k8wa5.2.pdb
18/01/2012 23:20:05 : INFO  : Building c1k8wA_.1.pdb
18/01/2012 23:20:33 : INFO  : Building d1k8wa5.2.pdb
18/01/2012 23:20:59 : INFO  : Building d1r3ea2.3.pdb
18/01/2012 23:21:27 : INFO  : Building c1sgvA_.4.pdb
18/01/2012 23:21:55 : INFO  : Building c2ey4A_.5.pdb
18/01/2012 23:22:23 : INFO  : Building c3uaiA_.6.pdb
18/01/2012 23:22:50 : INFO  : Building c2apoA_.7.pdb
18/01/2012 23:23:19 : INFO  : Building d2ey4a2.8.pdb
18/01/2012 23:23:46 : INFO  : Building d1sgva2.9.pdb
18/01/2012 23:24:13 : INFO  : Building c1ze2B_.10.pdb
18/01/2012 23:24:41 : INFO  : Building d2apoa2.11.pdb
18/01/2012 23:25:09 : INFO  : Building c2omlA_.12.pdb
18/01/2012 23:25:36 : INFO  : Building d1k8wa3.13.pdb
18/01/2012 23:26:03 : INFO  : Building c2olwB_.14.pdb
18/01/2012 23:26:30 : INFO  : Building c2v9kA_.15.pdb
18/01/2012 23:26:59 : INFO  : Building d1vioa1.16.pdb
18/01/2012 23:27:27 : INFO  : Building c2gmlA_.17.pdb
18/01/2012 23:27:54 : INFO  : Building c3dh3C_.18.pdb
18/01/2012 23:28:24 : INFO  : Building d1kska4.19.pdb
18/01/2012 23:28:53 : INFO  : Building c1vioA_.20.pdb
18/01/2012 23:30:27 : INFO  : Finished HH model building
18/01/2012 23:30:31 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 23:31:49 : INFO  : html domain output complete ID '1178dd69661e9c4d'
19/01/2012 00:04:13 : INFO  : Run end  : Thu Jan 19 00:04:11 GMT 2012
