Phyre 2 Results for P60340

Email | l.a.kelley@imperial.ac.uk
Description | P60340
Date | Thu Jan 5 12:06:43 GMT 2012
Unique Job ID | 1178dd69661e9c4d

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1k8wA_ |
|  | 100.0 | 100 | PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna
2 | d1k8wa5 |
|  | 100.0 | 100 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
3 | d1r3ea2 |
|  | 100.0 | 33 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
4 | c1sgvA_ |
|  | 100.0 | 32 | PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub)
5 | c2ey4A_ |
|  | 100.0 | 29 | PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex
6 | c3uaiA_ |
|  | 100.0 | 28 | PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae
7 | c2apoA_ |
|  | 100.0 | 31 | PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex
8 | d2ey4a2 |
|  | 100.0 | 32 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
9 | d1sgva2 |
|  | 100.0 | 37 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
10 | c1ze2B_ |
|  | 100.0 | 29 | PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate
11 | d2apoa2 |
|  | 100.0 | 32 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
12 | c2omlA_ |
|  | 99.2 | 20 | PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue
13 | d1k8wa3 |
|  | 99.1 | 100 | Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain
14 | c2olwB_ |
|  | 98.9 | 20 | PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue
15 | c2v9kA_ |
|  | 98.3 | 17 | PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein flj32312; PDBTitle: crystal structure of human pus10, a novel pseudouridine2 synthase.
16 | d1vioa1 |
|  | 98.2 | 23 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD
17 | c2gmlA_ |
|  | 98.1 | 22 | PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf
18 | c3dh3C_ |
|  | 98.1 | 18 | PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate
19 | d1kska4 |
|  | 98.0 | 19 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD
20 | c1vioA_ |
|  | 97.7 | 24 | PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase
21 | d1v9ka_ |
| not modelled | 97.5 | 20 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD
22 | c3zv0D_ |
| not modelled | 97.5 | 19 | PDB header:cell cycle Chain: D: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1p-cbf5p complex
23 | c2i82D_ |
| not modelled | 97.4 | 17 | PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure
24 | c1kskA_ |
| not modelled | 97.3 | 21 | PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua
25 | c1qyuA_ |
| not modelled | 97.3 | 24 | PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud
26 | d1v9fa_ |
| not modelled | 97.3 | 23 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD
27 | c1v9fA_ |
| not modelled | 97.3 | 23 | PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli
28 | d2apoa1 |
| not modelled | 95.5 | 23 | Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain
29 | d1r3ea1 |
| not modelled | 93.5 | 20 | Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain
30 | d2ey4a1 |
| not modelled | 93.1 | 13 | Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain
31 | d1sgva1 |
| not modelled | 90.2 | 18 | Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain
32 | c1q7hA_ |
| not modelled | 75.1 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of a conserved pua domain protein from thermoplasma2 acidophilum
33 | c3d79A_ |
| not modelled | 74.1 | 19 | PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein ph0734; PDBTitle: crystal structure of hypothetical protein ph0734.1 from2 hyperthermophilic archaea pyrococcus horikoshii ot3
34 | d1iq8a3 |
| not modelled | 73.3 | 16 | Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain
35 | d2as0a1 |
| not modelled | 68.7 | 21 | Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD)
36 | c1sb7A_ |
| not modelled | 67.7 | 12 | PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase d; PDBTitle: crystal structure of the e.coli pseudouridine synthase trud
37 | d1szwa_ |
| not modelled | 67.5 | 10 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:tRNA pseudouridine synthase TruD
38 | d2b78a1 |
| not modelled | 59.6 | 12 | Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD)
39 | c2b78A_ |
| not modelled | 57.3 | 10 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein smu.776; PDBTitle: a putative sam-dependent methyltransferase from2 streptococcus mutans
40 | d1q7ha1 |
| not modelled | 54.4 | 20 | Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain
41 | c3r90E_ |
| not modelled | 50.6 | 11 | PDB header:rna binding protein Chain: E: PDB Molecule:malignant t cell-amplified sequence 1; PDBTitle: crystal structure of malignant t cell-amplified sequence 1 protein
42 | c1zs7A_ |
| not modelled | 44.3 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ape0525; PDBTitle: the structure of gene product ape0525 from aeropyrum pernix
43 | c2gagC_ |
| not modelled | 37.2 | 15 | PDB header:oxidoreductase Chain: C: PDB Molecule:heterotetrameric sarcosine oxidase gamma-subunit; PDBTitle: heteroteterameric sarcosine: structure of a diflavin metaloenzyme at2 1.85 a resolution
44 | c2frxD_ |
| not modelled | 35.0 | 21 | PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli
45 | c3m4xA_ |
| not modelled | 34.6 | 18 | PDB header:transferase Chain: A: PDB Molecule:nol1/nop2/sun family protein; PDBTitle: structure of a ribosomal methyltransferase
46 | c2xzmW_ |
| not modelled | 34.4 | 23 | PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
47 | c2hjgA_ |
| not modelled | 29.6 | 8 | PDB header:hydrolase Chain: A: PDB Molecule:gtp-binding protein enga; PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
48 | d2a2pa1 |
| not modelled | 28.4 | 21 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related
49 | d2jn9a1 |
| not modelled | 28.2 | 9 | Fold:Split barrel-like Superfamily:YkvR-like Family:YkvR-like
50 | d1o7qa_ |
| not modelled | 24.8 | 21 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:alpha-1,3-galactosyltransferase-like
51 | d2cx1a1 |
| not modelled | 22.1 | 20 | Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain
52 | d1lzia_ |
| not modelled | 21.7 | 15 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:alpha-1,3-galactosyltransferase-like
53 | d2gx8a1 |
| not modelled | 21.5 | 17 | Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like
54 | c1z2zB_ |
| not modelled | 18.9 | 16 | PDB header:lyase Chain: B: PDB Molecule:probable trna pseudouridine synthase d; PDBTitle: crystal structure of the putative trna pseudouridine2 synthase d (trud) from methanosarcina mazei, northeast3 structural genomics target mar1
55 | d1mkya3 |
| not modelled | 18.9 | 3 | Fold:Alpha-lytic protease prodomain-like Superfamily:Probable GTPase Der, C-terminal domain Family:Probable GTPase Der, C-terminal domain
56 | c2gx8B_ |
| not modelled | 18.3 | 17 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:nif3-related protein; PDBTitle: the crystal stucture of bacillus cereus protein related to nif3
57 | d1k7ia2 |
| not modelled | 16.6 | 33 | Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain
58 | c3czxA_ |
| not modelled | 15.3 | 50 | PDB header:hydrolase Chain: A: PDB Molecule:putative n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of the putative n-acetylmuramoyl-l-2 alanine amidase from neisseria meningitidis
59 | d1g9ka2 |
| not modelled | 14.5 | 39 | Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain
60 | c1mkyA_ |
| not modelled | 14.3 | 3 | PDB header:ligand binding protein Chain: A: PDB Molecule:probable gtp-binding protein enga; PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
61 | c3m6wA_ |
| not modelled | 13.7 | 22 | PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine
62 | c3or5A_ |
| not modelled | 13.6 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein, thioredoxin family PDBTitle: crystal structure of thiol:disulfide interchange protein, thioredoxin2 family protein from chlorobium tepidum tls
63 | c3eykA_ |
| not modelled | 13.2 | 15 | PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin ha1 chain; PDBTitle: structure of influenza haemagglutinin in complex with an2 inhibitor of membrane fusion
64 | c3cmiA_ |
| not modelled | 11.8 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin hyr1; PDBTitle: crystal structure of glutathione-dependent phospholipid peroxidase2 hyr1 from the yeast saccharomyces cerevisiae
65 | c1iq8B_ |
| not modelled | 11.5 | 16 | PDB header:transferase Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase; PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii
66 | c2nydB_ |
| not modelled | 11.5 | 13 | PDB header:unknown function Chain: B: PDB Molecule:upf0135 protein sa1388; PDBTitle: crystal structure of staphylococcus aureus hypothetical protein sa1388
67 | d1sata2 |
| not modelled | 11.3 | 33 | Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain
68 | d3saka_ |
| not modelled | 11.1 | 29 | Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain
69 | c2owlA_ |
| not modelled | 10.0 | 12 | PDB header:recombination Chain: A: PDB Molecule:recombination-associated protein rdgc; PDBTitle: crystal structure of e. coli rdgc
70 | c3ne8A_ |
| not modelled | 10.0 | 50 | PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of a domain from n-acetylmuramoyl-l-alanine2 amidase of bartonella henselae str. houston-1
71 | d1muga_ |
| not modelled | 9.1 | 19 | Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like
72 | c3kbgA_ |
| not modelled | 9.0 | 15 | PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28.
73 | c2d07A_ |
| not modelled | 8.8 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:g/t mismatch-specific thymine dna glycosylase; PDBTitle: crystal structure of sumo-3-modified thymine-dna glycosylase
74 | d1jwqa_ |
| not modelled | 8.3 | 50 | Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:N-acetylmuramoyl-L-alanine amidase-like
75 | d2gy9i1 |
| not modelled | 8.3 | 18 | Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components
76 | c1yp3C_ |
| not modelled | 7.7 | 24 | PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp
77 | c2xs4A_ |
| not modelled | 7.4 | 28 | PDB header:hydrolase Chain: A: PDB Molecule:karilysin protease; PDBTitle: structure of karilysin catalytic mmp domain in complex with2 magnesium
78 | d1xova2 |
| not modelled | 7.3 | 29 | Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:N-acetylmuramoyl-L-alanine amidase-like
79 | c1pk1B_ |
| not modelled | 7.3 | 12 | PDB header:transcription repression Chain: B: PDB Molecule:sex comb on midleg cg9495-pa; PDBTitle: hetero sam domain structure of ph and scm.
80 | d1hv5a_ |
| not modelled | 7.3 | 26 | Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain
81 | c1mszA_ |
| not modelled | 7.3 | 21 | PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein smubp-2; PDBTitle: solution structure of the r3h domain from human smubp-2
82 | d1msza_ |
| not modelled | 7.3 | 21 | Fold:IF3-like Superfamily:R3H domain Family:R3H domain
83 | c2vn1A_ |
| not modelled | 7.1 | 13 | PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506
84 | d1cgla_ |
| not modelled | 7.0 | 22 | Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain
85 | c3lfmA_ |
| not modelled | 7.0 | 46 | PDB header:oxidoreductase Chain: A: PDB Molecule:protein fto; PDBTitle: crystal structure of the fat mass and obesity associated (fto) protein2 reveals basis for its substrate specificity
86 | d1bqqm_ |
| not modelled | 7.0 | 32 | Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain
87 | d1g0da2 |
| not modelled | 6.8 | 21 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains
88 | d1nmpa_ |
| not modelled | 6.7 | 6 | Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like
89 | d2fg9a1 |
| not modelled | 6.6 | 19 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like
90 | d1s1qa_ |
| not modelled | 6.6 | 18 | Fold:UBC-like Superfamily:UBC-like Family:UEV domain
91 | c3eytA_ |
| not modelled | 6.6 | 24 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spoa0173; PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173
92 | c2e1cA_ |
| not modelled | 6.4 | 16 | PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
93 | d2ovxa1 |
| not modelled | 6.2 | 22 | Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain
94 | d2b5xa1 |
| not modelled | 6.2 | 15 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like
95 | c2obiA_ |
| not modelled | 6.1 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:phospholipid hydroperoxide glutathione PDBTitle: crystal structure of the selenocysteine to cysteine mutant2 of human phospholipid hydroperoxide glutathione peroxidase3 (gpx4)
96 | d1nkva_ |
| not modelled | 6.0 | 8 | Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Hypothetical Protein YjhP
97 | d1r9ha_ |
| not modelled | 5.8 | 16 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
98 | c2l4bA_ |
| not modelled | 5.7 | 24 | PDB header:transferase Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of a putative acyl carrier protein from anaplasma2 phagocytophilum. seattle structural genomics center for infectious3 disease target anpha.01018.a
99 | c3iz6D_ |
| not modelled | 5.7 | 14 | PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome