Phyre 2 alignment of P60340 with c2frxD_

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Job Description | P60340
Confidence | 35.04% | Date | Thu Jan 5 12:06:43 GMT 2012
Rank | 44 | Aligned Residues | 52
% Identity | 21% | Template | c2frxD_
PDB info | PDB header:transferase | Chain: D: PDB Molecule:hypothetical protein yebu; | PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli
Resolution | 2.90 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | D | Y | P | V | V | N | L | P | L | T | S | S | V | Y | F | K | N | G | N | P | V | R | T | S | G | A | P | L | E | G | L | V | R | V | T | E | G | E | N | G | K | F | I | G | M | G | E | I | D | D | E | G | R | V | A
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Template Sequence |  | N | X | N | A | F | E | L | T | P | Q | E | A | E | E | W | Y | R | G | R | D | V | Y | P | Q | A | A | P | V | A | D | D | V | L | V | T | F | . | . | Q | H | Q | P | I | G | L | A | K | R | . | I | G | S | R | L | K
Template Known Secondary structure |  | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  | S | S |  |  | S |  | S |  |  |  |  |  | S | . | . | S | S | S |  |  |  |  |  |  |  | . | T | T | T | T |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . |  |  | . | . | . | . | 450 | . | . | . | . | . |  | . | . | . | . | 460 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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