Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	R	P	R	R	R	G	R	D	I	N	G	V	L	L	L	D	K	P	Q	G	M	S	S	N	D	A	L	Q	K	V	K	R	I	Y	N	A	N	R	A	G	H	T	G	A	L	D	P	L	A	T	G	M	L	P	I	C	L	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	A	T	K	F	S	Q	Y	L	L	D	S	D	K	R	Y	R	V	I	A	R	L	G	Q	R	T	D	T	S	D	A	D	G	Q	I	V	E	E	R	P	V	T	F	S	A	E	Q	L	A	A	A	L	D	T	F	R	G	D	I	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	I	P	S	M	Y	S	A	L	K	Y	Q	G	K	K	L	Y	E	Y	A	R	Q	G	I	E	V	P	R	E	A	R	P	I	T	V	Y	E	L	L	F	I	R	H	E	G	N	E	L	E	L	E	I	H	C	S	K	G	T	Y	I
Secondary structure
SS confidence
Disorder		?										?														?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	T	I	I	D	D	L	G	E	K	L	G	C	G	A	H	V	I	Y	L	R	R	L	A	V	S	K	Y	P	V	E	R	M	V	T	L	E	H	L	R	E	L	V	E	Q	A	E	Q	Q	D	I	P	A	A	E	L	L	D	P	L
Secondary structure
SS confidence
Disorder																																															?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	M	P	M	D	S	P	A	S	D	Y	P	V	V	N	L	P	L	T	S	S	V	Y	F	K	N	G	N	P	V	R	T	S	G	A	P	L	E	G	L	V	R	V	T	E	G	E	N	G	K	F	I	G	M	G	E	I	D	D	E
Secondary structure
SS confidence
Disorder																																?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.
Sequence		G	R	V	A	P	R	R	L	V	V	E	Y	P	A
Secondary structure
SS confidence
Disorder												?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1k8w chain A Region: 10 - 312 Aligned: 303 Modelled: 302 Confidence: 100.0% Identity: 100% PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna Phyre2 PDB 1k8w chain A domain 5 Region: 10 - 250 Aligned: 241 Modelled: 241 Confidence: 100.0% Identity: 100% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 1r3e chain A domain 2 Region: 11 - 250 Aligned: 227 Modelled: 240 Confidence: 100.0% Identity: 33% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 1sgv chain A Region: 13 - 313 Aligned: 257 Modelled: 267 Confidence: 100.0% Identity: 32% PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) Phyre2 PDB 2ey4 chain A Region: 7 - 311 Aligned: 268 Modelled: 271 Confidence: 100.0% Identity: 29% PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex Phyre2 PDB 3uai chain A Region: 12 - 313 Aligned: 263 Modelled: 265 Confidence: 100.0% Identity: 28% PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae Phyre2 PDB 2apo chain A Region: 8 - 313 Aligned: 259 Modelled: 261 Confidence: 100.0% Identity: 31% PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex Phyre2 PDB 2ey4 chain A domain 2 Region: 12 - 250 Aligned: 203 Modelled: 205 Confidence: 100.0% Identity: 32% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 1sgv chain A domain 2 Region: 12 - 248 Aligned: 198 Modelled: 202 Confidence: 100.0% Identity: 37% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 1ze2 chain B Region: 11 - 303 Aligned: 209 Modelled: 234 Confidence: 100.0% Identity: 29% PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate Phyre2 PDB 2apo chain A domain 2 Region: 12 - 249 Aligned: 191 Modelled: 193 Confidence: 100.0% Identity: 32% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase II TruB Phyre2 PDB 2oml chain A Region: 14 - 212 Aligned: 157 Modelled: 163 Confidence: 99.2% Identity: 20% PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue Phyre2 PDB 1k8w chain A domain 3 Region: 251 - 312 Aligned: 62 Modelled: 61 Confidence: 99.1% Identity: 100% Fold: PUA domain-like Superfamily: PUA domain-like Family: PUA domain Phyre2 PDB 2olw chain B Region: 14 - 212 Aligned: 155 Modelled: 163 Confidence: 98.9% Identity: 20% PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue Phyre2 PDB 2v9k chain A Region: 70 - 200 Aligned: 99 Modelled: 114 Confidence: 98.3% Identity: 17% PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein flj32312; PDBTitle: crystal structure of human pus10, a novel pseudouridine2 synthase. Phyre2 PDB 1vio chain A domain 1 Region: 14 - 222 Aligned: 151 Modelled: 159 Confidence: 98.2% Identity: 23% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase RsuA/RluD Phyre2 PDB 2gml chain A Region: 14 - 224 Aligned: 148 Modelled: 159 Confidence: 98.1% Identity: 22% PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf Phyre2 PDB 3dh3 chain C Region: 14 - 212 Aligned: 141 Modelled: 147 Confidence: 98.1% Identity: 18% PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate Phyre2 PDB 1ksk chain A domain 4 Region: 14 - 215 Aligned: 145 Modelled: 152 Confidence: 98.0% Identity: 19% Fold: Pseudouridine synthase Superfamily: Pseudouridine synthase Family: Pseudouridine synthase RsuA/RluD Phyre2 PDB 1vio chain A Region: 14 - 215 Aligned: 144 Modelled: 152 Confidence: 97.7% Identity: 24% PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase Phyre2 1 c1k8wA_ 2 d1k8wa5 3 d1r3ea2 4 c1sgvA_ 5 c2ey4A_ 6 c3uaiA_ 7 c2apoA_ 8 d2ey4a2 9 d1sgva2 10 c1ze2B_ 11 d2apoa2 12 c2omlA_ 13 d1k8wa3 14 c2olwB_ 15 c2v9kA_ 16 d1vioa1 17 c2gmlA_ 18 c3dh3C_ 19 d1kska4 20 c1vioA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1k8wA_ 100.0 100 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 2 d1k8wa5 100.0 100 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 3 d1r3ea2 100.0 33 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 4 c1sgvA_ 100.0 32 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) 5 c2ey4A_ 100.0 29 PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex 6 c3uaiA_ 100.0 28 PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae 7 c2apoA_ 100.0 31 PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex 8 d2ey4a2 100.0 32 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 9 d1sgva2 100.0 37 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 10 c1ze2B_ 100.0 29 PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate 11 d2apoa2 100.0 32 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 12 c2omlA_ 99.2 20 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 13 d1k8wa3 99.1 100 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 14 c2olwB_ 98.9 20 PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 15 c2v9kA_ 98.3 17 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein flj32312; PDBTitle: crystal structure of human pus10, a novel pseudouridine2 synthase. 16 d1vioa1 98.2 23 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 17 c2gmlA_ 98.1 22 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf 18 c3dh3C_ 98.1 18 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 19 d1kska4 98.0 19 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 20 c1vioA_ 97.7 24 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase 21 d1v9ka_ not modelled 97.5 20 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 22 c3zv0D_ not modelled 97.5 19 PDB header:cell cycle Chain: D: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1p-cbf5p complex 23 c2i82D_ not modelled 97.4 17 PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure 24 c1kskA_ not modelled 97.3 21 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua 25 c1qyuA_ not modelled 97.3 24 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud 26 d1v9fa_ not modelled 97.3 23 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 27 c1v9fA_ not modelled 97.3 23 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli 28 d2apoa1 not modelled 95.5 23 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 29 d1r3ea1 not modelled 93.5 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 30 d2ey4a1 not modelled 93.1 13 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 31 d1sgva1 not modelled 90.2 18 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 32 c1q7hA_ not modelled 75.1 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of a conserved pua domain protein from thermoplasma2 acidophilum 33 c3d79A_ not modelled 74.1 19 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein ph0734; PDBTitle: crystal structure of hypothetical protein ph0734.1 from2 hyperthermophilic archaea pyrococcus horikoshii ot3 34 d1iq8a3 not modelled 73.3 16 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 35 d2as0a1 not modelled 68.7 21 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD) 36 c1sb7A_ not modelled 67.7 12 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase d; PDBTitle: crystal structure of the e.coli pseudouridine synthase trud 37 d1szwa_ not modelled 67.5 10 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:tRNA pseudouridine synthase TruD 38 d2b78a1 not modelled 59.6 12 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical RNA methyltransferase domain (HRMD) 39 c2b78A_ not modelled 57.3 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein smu.776; PDBTitle: a putative sam-dependent methyltransferase from2 streptococcus mutans 40 d1q7ha1 not modelled 54.4 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 41 c3r90E_ not modelled 50.6 11 PDB header:rna binding protein Chain: E: PDB Molecule:malignant t cell-amplified sequence 1; PDBTitle: crystal structure of malignant t cell-amplified sequence 1 protein 42 c1zs7A_ not modelled 44.3 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ape0525; PDBTitle: the structure of gene product ape0525 from aeropyrum pernix 43 c2gagC_ not modelled 37.2 15 PDB header:oxidoreductase Chain: C: PDB Molecule:heterotetrameric sarcosine oxidase gamma-subunit; PDBTitle: heteroteterameric sarcosine: structure of a diflavin metaloenzyme at2 1.85 a resolution 44 c2frxD_ not modelled 35.0 21 PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli 45 c3m4xA_ not modelled 34.6 18 PDB header:transferase Chain: A: PDB Molecule:nol1/nop2/sun family protein; PDBTitle: structure of a ribosomal methyltransferase 46 c2xzmW_ not modelled 34.4 23 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 47 c2hjgA_ not modelled 29.6 8 PDB header:hydrolase Chain: A: PDB Molecule:gtp-binding protein enga; PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp 48 d2a2pa1 not modelled 28.4 21 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Selenoprotein W-related 49 d2jn9a1 not modelled 28.2 9 Fold:Split barrel-like Superfamily:YkvR-like Family:YkvR-like 50 d1o7qa_ not modelled 24.8 21 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:alpha-1,3-galactosyltransferase-like 51 d2cx1a1 not modelled 22.1 20 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 52 d1lzia_ not modelled 21.7 15 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:alpha-1,3-galactosyltransferase-like 53 d2gx8a1 not modelled 21.5 17 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 54 c1z2zB_ not modelled 18.9 16 PDB header:lyase Chain: B: PDB Molecule:probable trna pseudouridine synthase d; PDBTitle: crystal structure of the putative trna pseudouridine2 synthase d (trud) from methanosarcina mazei, northeast3 structural genomics target mar1 55 d1mkya3 not modelled 18.9 3 Fold:Alpha-lytic protease prodomain-like Superfamily:Probable GTPase Der, C-terminal domain Family:Probable GTPase Der, C-terminal domain 56 c2gx8B_ not modelled 18.3 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:nif3-related protein; PDBTitle: the crystal stucture of bacillus cereus protein related to nif3 57 d1k7ia2 not modelled 16.6 33 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain 58 c3czxA_ not modelled 15.3 50 PDB header:hydrolase Chain: A: PDB Molecule:putative n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of the putative n-acetylmuramoyl-l-2 alanine amidase from neisseria meningitidis 59 d1g9ka2 not modelled 14.5 39 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain 60 c1mkyA_ not modelled 14.3 3 PDB header:ligand binding protein Chain: A: PDB Molecule:probable gtp-binding protein enga; PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains 61 c3m6wA_ not modelled 13.7 22 PDB header:transferase Chain: A: PDB Molecule:rrna methylase; PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine 62 c3or5A_ not modelled 13.6 18 PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein, thioredoxin family PDBTitle: crystal structure of thiol:disulfide interchange protein, thioredoxin2 family protein from chlorobium tepidum tls 63 c3eykA_ not modelled 13.2 15 PDB header:viral protein Chain: A: PDB Molecule:hemagglutinin ha1 chain; PDBTitle: structure of influenza haemagglutinin in complex with an2 inhibitor of membrane fusion 64 c3cmiA_ not modelled 11.8 13 PDB header:oxidoreductase Chain: A: PDB Molecule:peroxiredoxin hyr1; PDBTitle: crystal structure of glutathione-dependent phospholipid peroxidase2 hyr1 from the yeast saccharomyces cerevisiae 65 c1iq8B_ not modelled 11.5 16 PDB header:transferase Chain: B: PDB Molecule:archaeosine trna-guanine transglycosylase; PDBTitle: crystal structure of archaeosine trna-guanine2 transglycosylase from pyrococcus horikoshii 66 c2nydB_ not modelled 11.5 13 PDB header:unknown function Chain: B: PDB Molecule:upf0135 protein sa1388; PDBTitle: crystal structure of staphylococcus aureus hypothetical protein sa1388 67 d1sata2 not modelled 11.3 33 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Serralysin-like metalloprotease, catalytic (N-terminal) domain 68 d3saka_ not modelled 11.1 29 Fold:p53 tetramerization domain Superfamily:p53 tetramerization domain Family:p53 tetramerization domain 69 c2owlA_ not modelled 10.0 12 PDB header:recombination Chain: A: PDB Molecule:recombination-associated protein rdgc; PDBTitle: crystal structure of e. coli rdgc 70 c3ne8A_ not modelled 10.0 50 PDB header:hydrolase Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase; PDBTitle: the crystal structure of a domain from n-acetylmuramoyl-l-alanine2 amidase of bartonella henselae str. houston-1 71 d1muga_ not modelled 9.1 19 Fold:Uracil-DNA glycosylase-like Superfamily:Uracil-DNA glycosylase-like Family:Mug-like 72 c3kbgA_ not modelled 9.0 15 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 73 c2d07A_ not modelled 8.8 16 PDB header:hydrolase Chain: A: PDB Molecule:g/t mismatch-specific thymine dna glycosylase; PDBTitle: crystal structure of sumo-3-modified thymine-dna glycosylase 74 d1jwqa_ not modelled 8.3 50 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:N-acetylmuramoyl-L-alanine amidase-like 75 d2gy9i1 not modelled 8.3 18 Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:Translational machinery components 76 c1yp3C_ not modelled 7.7 24 PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp 77 c2xs4A_ not modelled 7.4 28 PDB header:hydrolase Chain: A: PDB Molecule:karilysin protease; PDBTitle: structure of karilysin catalytic mmp domain in complex with2 magnesium 78 d1xova2 not modelled 7.3 29 Fold:Phosphorylase/hydrolase-like Superfamily:Zn-dependent exopeptidases Family:N-acetylmuramoyl-L-alanine amidase-like 79 c1pk1B_ not modelled 7.3 12 PDB header:transcription repression Chain: B: PDB Molecule:sex comb on midleg cg9495-pa; PDBTitle: hetero sam domain structure of ph and scm. 80 d1hv5a_ not modelled 7.3 26 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 81 c1mszA_ not modelled 7.3 21 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding protein smubp-2; PDBTitle: solution structure of the r3h domain from human smubp-2 82 d1msza_ not modelled 7.3 21 Fold:IF3-like Superfamily:R3H domain Family:R3H domain 83 c2vn1A_ not modelled 7.1 13 PDB header:isomerase Chain: A: PDB Molecule:70 kda peptidylprolyl isomerase; PDBTitle: crystal structure of the fk506-binding domain of plasmodium2 falciparum fkbp35 in complex with fk506 84 d1cgla_ not modelled 7.0 22 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 85 c3lfmA_ not modelled 7.0 46 PDB header:oxidoreductase Chain: A: PDB Molecule:protein fto; PDBTitle: crystal structure of the fat mass and obesity associated (fto) protein2 reveals basis for its substrate specificity 86 d1bqqm_ not modelled 7.0 32 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 87 d1g0da2 not modelled 6.8 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:Transglutaminase, two C-terminal domains Family:Transglutaminase, two C-terminal domains 88 d1nmpa_ not modelled 6.7 6 Fold:NIF3 (NGG1p interacting factor 3)-like Superfamily:NIF3 (NGG1p interacting factor 3)-like Family:NIF3 (NGG1p interacting factor 3)-like 89 d2fg9a1 not modelled 6.6 19 Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like 90 d1s1qa_ not modelled 6.6 18 Fold:UBC-like Superfamily:UBC-like Family:UEV domain 91 c3eytA_ not modelled 6.6 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spoa0173; PDBTitle: crystal structure of thioredoxin-like superfamily protein spoa0173 92 c2e1cA_ not modelled 6.4 16 PDB header:transcription/dna Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519; PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex 93 d2ovxa1 not modelled 6.2 22 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Matrix metalloproteases, catalytic domain 94 d2b5xa1 not modelled 6.2 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 95 c2obiA_ not modelled 6.1 15 PDB header:oxidoreductase Chain: A: PDB Molecule:phospholipid hydroperoxide glutathione PDBTitle: crystal structure of the selenocysteine to cysteine mutant2 of human phospholipid hydroperoxide glutathione peroxidase3 (gpx4) 96 d1nkva_ not modelled 6.0 8 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Hypothetical Protein YjhP 97 d1r9ha_ not modelled 5.8 16 Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase 98 c2l4bA_ not modelled 5.7 24 PDB header:transferase Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of a putative acyl carrier protein from anaplasma2 phagocytophilum. seattle structural genomics center for infectious3 disease target anpha.01018.a 99 c3iz6D_ not modelled 5.7 14 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0