BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (68 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=S... 138 4e-32 UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24 82 5e-15 UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp... 48 8e-05 UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX 48 9e-05 UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=... 45 6e-04 UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax... 42 0.006 UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root R... 40 0.017 UniRef50_D1P2W3 Conserved domain protein n=2 Tax=Providencia Rep... 40 0.026 UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9... 38 0.092 UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Entero... 38 0.093 >UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=SRNB_ECOLI Length = 68 Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 68/68 (100%), Positives = 68/68 (100%) Query: 1 MKYLNTTDCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQV 60 MKYLNTTDCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQV Sbjct: 1 MKYLNTTDCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQV 60 Query: 61 TLAYEARK 68 TLAYEARK Sbjct: 61 TLAYEARK 68 >UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24 Length = 65 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 38/41 (92%), Positives = 40/41 (97%) Query: 28 LLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 + AVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEAR+ Sbjct: 1 MFAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARQ 41 >UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUJ6_AERS4 Length = 120 Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 8/67 (11%) Query: 2 KYLNTTDCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVT 61 K L + S+F K A++ LL VC T L + R+ LCEL +H+G T +++ Sbjct: 62 KPLQPKEASMF--------GKTAVVSLLIVCITALGVISLVRDSLCELEVHQGETEIRLN 113 Query: 62 LAYEARK 68 LAYEA++ Sbjct: 114 LAYEAKR 120 >UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX Length = 50 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 31/44 (70%) Query: 25 LIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 L+ L+ +C T+LCF + R+ LC L + +GNTV+ TLAYE ++ Sbjct: 7 LMMLIVICVTILCFVWMVRDSLCGLRLQQGNTVLVATLAYEVKR 50 >UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=HOKE_ECO57 Length = 50 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 31/49 (63%) Query: 20 MTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 +TKYAL+ ++ +C TVL F+L+ + LCE + N + LAYE +K Sbjct: 2 LTKYALVAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK 50 >UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001C3405D Length = 50 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%) Query: 20 MTKYALI-GLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 M K AL+ GL +C T+L F+ + R+ LCEL+ + T + LAYEA++ Sbjct: 1 MPKRALLLGLFLICTTLLIFTWMVRDSLCELHFRQEKTELAAVLAYEAKR 50 >UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root RepID=C8TT42_ECO26 Length = 70 Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 29/47 (61%) Query: 22 KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 K LI L+ +C TV+ +L+ R+ LCE+ I G T V V + YE+ K Sbjct: 24 KAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFVDYESEK 70 >UniRef50_D1P2W3 Conserved domain protein n=2 Tax=Providencia RepID=D1P2W3_9ENTR Length = 43 Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 28/41 (68%) Query: 25 LIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYE 65 +I ++++C T+L S + ++RL L+I NTVVQV L YE Sbjct: 1 MIAVVSICVTILGCSFLIKDRLSYLHIDNDNTVVQVKLDYE 41 >UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9F578_ECOLX Length = 53 Score = 38.1 bits (87), Expect = 0.092, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 26/39 (66%) Query: 28 LLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEA 66 LL VC T+L F+ + R RLCE+ + G+ V +LAYE+ Sbjct: 12 LLIVCCTLLIFTYLTRNRLCEVRLKDGDREVTASLAYES 50 >UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Enterobacteriaceae RepID=D2TJU7_CITRO Length = 50 Score = 38.1 bits (87), Expect = 0.093, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 29/47 (61%) Query: 22 KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 K L L+ +C T+L F+ + R+ LCEL+I +GN + LA E ++ Sbjct: 4 KCILCSLIVICLTILLFTWMVRDSLCELHIRQGNNELAAFLACEVKQ 50 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=S... 90 2e-17 UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp... 74 1e-12 UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24 61 1e-08 UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=... 59 6e-08 UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX 57 2e-07 Sequences not found previously or not previously below threshold: UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Entero... 47 3e-04 UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax... 46 3e-04 UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio ... 39 0.039 UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9... 39 0.051 UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella ba... 38 0.090 >UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=SRNB_ECOLI Length = 68 Score = 90.1 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 68/68 (100%), Positives = 68/68 (100%) Query: 1 MKYLNTTDCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQV 60 MKYLNTTDCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQV Sbjct: 1 MKYLNTTDCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQV 60 Query: 61 TLAYEARK 68 TLAYEARK Sbjct: 61 TLAYEARK 68 >UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUJ6_AERS4 Length = 120 Score = 74.0 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 8/67 (11%) Query: 2 KYLNTTDCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVT 61 K L + S+F K A++ LL VC T L + R+ LCEL +H+G T +++ Sbjct: 62 KPLQPKEASMF--------GKTAVVSLLIVCITALGVISLVRDSLCELEVHQGETEIRLN 113 Query: 62 LAYEARK 68 LAYEA++ Sbjct: 114 LAYEAKR 120 >UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24 Length = 65 Score = 60.9 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 38/41 (92%), Positives = 40/41 (97%) Query: 28 LLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 + AVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEAR+ Sbjct: 1 MFAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARQ 41 >UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=HOKE_ECO57 Length = 50 Score = 58.5 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%) Query: 20 MTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 +TKYAL+ ++ +C TVL F+L+ + LCE + N + LAYE +K Sbjct: 2 LTKYALVAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK 50 >UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX Length = 50 Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 32/47 (68%) Query: 22 KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 + L+ L+ +C T+LCF + R+ LC L + +GNTV+ TLAYE ++ Sbjct: 4 RTFLMMLIVICVTILCFVWMVRDSLCGLRLQQGNTVLVATLAYEVKR 50 >UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Enterobacteriaceae RepID=D2TJU7_CITRO Length = 50 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 29/47 (61%) Query: 22 KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 K L L+ +C T+L F+ + R+ LCEL+I +GN + LA E ++ Sbjct: 4 KCILCSLIVICLTILLFTWMVRDSLCELHIRQGNNELAAFLACEVKQ 50 >UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001C3405D Length = 50 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 29/44 (65%) Query: 25 LIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 L+GL +C T+L F+ + R+ LCEL+ + T + LAYEA++ Sbjct: 7 LLGLFLICTTLLIFTWMVRDSLCELHFRQEKTELAAVLAYEAKR 50 >UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus RepID=Q8D675_VIBVU Length = 65 Score = 39.3 bits (90), Expect = 0.039, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 8 DCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEAR 67 D SL L R K AL L+ VC T + + ++ LC++ + + LAYE R Sbjct: 6 DNSLLLHRRQVMPKKTALAALVVVCITAVILTALYTGSLCDIRYKDQQNDLSIKLAYEVR 65 >UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9F578_ECOLX Length = 53 Score = 38.9 bits (89), Expect = 0.051, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 26/39 (66%) Query: 28 LLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEA 66 LL VC T+L F+ + R RLCE+ + G+ V +LAYE+ Sbjct: 12 LLIVCCTLLIFTYLTRNRLCEVRLKDGDREVTASLAYES 50 >UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella baltica OS223 RepID=B8EG05_SHEB2 Length = 68 Score = 38.1 bits (87), Expect = 0.090, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 3 YLNTTDCSLFLAERSKFMT-KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVT 61 Y + T+ SLF R K + L VC T+L + R+ LC++ G ++ V Sbjct: 2 YPDNTNSSLFTFRRQDMPKRKTTTLSLAIVCFTLLAALALIRDDLCKVEYRNGAMLLNVV 61 Query: 62 LAYEAR 67 LAYE R Sbjct: 62 LAYEVR 67 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=S... 87 2e-16 UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp... 74 2e-12 UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Entero... 60 2e-08 UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24 59 4e-08 UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX 59 6e-08 UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=... 57 1e-07 UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax... 57 2e-07 Sequences not found previously or not previously below threshold: UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio ... 42 0.006 UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX 41 0.015 UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9... 40 0.018 UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root R... 40 0.023 UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella ba... 40 0.027 UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID... 40 0.031 UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI 40 0.031 UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronoba... 38 0.085 CONVERGED! >UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=SRNB_ECOLI Length = 68 Score = 86.7 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 68/68 (100%), Positives = 68/68 (100%) Query: 1 MKYLNTTDCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQV 60 MKYLNTTDCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQV Sbjct: 1 MKYLNTTDCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQV 60 Query: 61 TLAYEARK 68 TLAYEARK Sbjct: 61 TLAYEARK 68 >UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUJ6_AERS4 Length = 120 Score = 73.6 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 8/67 (11%) Query: 2 KYLNTTDCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVT 61 K L + S+F K A++ LL VC T L + R+ LCEL +H+G T +++ Sbjct: 62 KPLQPKEASMF--------GKTAVVSLLIVCITALGVISLVRDSLCELEVHQGETEIRLN 113 Query: 62 LAYEARK 68 LAYEA++ Sbjct: 114 LAYEAKR 120 >UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Enterobacteriaceae RepID=D2TJU7_CITRO Length = 50 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 29/47 (61%) Query: 22 KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 K L L+ +C T+L F+ + R+ LCEL+I +GN + LA E ++ Sbjct: 4 KCILCSLIVICLTILLFTWMVRDSLCELHIRQGNNELAAFLACEVKQ 50 >UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24 Length = 65 Score = 59.3 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 38/41 (92%), Positives = 40/41 (97%) Query: 28 LLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 + AVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEAR+ Sbjct: 1 MFAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARQ 41 >UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX Length = 50 Score = 58.5 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 32/47 (68%) Query: 22 KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 + L+ L+ +C T+LCF + R+ LC L + +GNTV+ TLAYE ++ Sbjct: 4 RTFLMMLIVICVTILCFVWMVRDSLCGLRLQQGNTVLVATLAYEVKR 50 >UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=HOKE_ECO57 Length = 50 Score = 57.4 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 31/49 (63%) Query: 20 MTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 +TKYAL+ ++ +C TVL F+L+ + LCE + N + LAYE +K Sbjct: 2 LTKYALVAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK 50 >UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001C3405D Length = 50 Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 30/47 (63%) Query: 22 KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 + L+GL +C T+L F+ + R+ LCEL+ + T + LAYEA++ Sbjct: 4 RALLLGLFLICTTLLIFTWMVRDSLCELHFRQEKTELAAVLAYEAKR 50 >UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus RepID=Q8D675_VIBVU Length = 65 Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%) Query: 8 DCSLFLAERSKFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEAR 67 D SL L R K AL L+ VC T + + ++ LC++ + + LAYE R Sbjct: 6 DNSLLLHRRQVMPKKTALAALVVVCITAVILTALYTGSLCDIRYKDQQNDLSIKLAYEVR 65 >UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX Length = 52 Score = 40.8 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 25/41 (60%) Query: 28 LLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 +L VC T+L F+ + R+ LCE+ G+ V +AYE+ K Sbjct: 12 VLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYESGK 52 >UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9F578_ECOLX Length = 53 Score = 40.4 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 26/39 (66%) Query: 28 LLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEA 66 LL VC T+L F+ + R RLCE+ + G+ V +LAYE+ Sbjct: 12 LLIVCCTLLIFTYLTRNRLCEVRLKDGDREVTASLAYES 50 >UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root RepID=C8TT42_ECO26 Length = 70 Score = 40.1 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 20/47 (42%), Positives = 29/47 (61%) Query: 22 KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 K LI L+ +C TV+ +L+ R+ LCE+ I G T V V + YE+ K Sbjct: 24 KAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFVDYESEK 70 >UniRef50_B8EG05 Hok/gef cell toxic protein n=2 Tax=Shewanella baltica OS223 RepID=B8EG05_SHEB2 Length = 68 Score = 39.7 bits (91), Expect = 0.027, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 3 YLNTTDCSLFLAERSKFMT-KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVT 61 Y + T+ SLF R K + L VC T+L + R+ LC++ G ++ V Sbjct: 2 YPDNTNSSLFTFRRQDMPKRKTTTLSLAIVCFTLLAALALIRDDLCKVEYRNGAMLLNVV 61 Query: 62 LAYEAR 67 LAYE R Sbjct: 62 LAYEVR 67 >UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID=C9Y3Z0_CROTZ Length = 52 Score = 39.7 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 25/51 (49%) Query: 18 KFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 K + +L +C T+L F+ + R LCEL + G LAYE+ K Sbjct: 2 KLLRSTLFWCVLMICITLLMFTFLTRHSLCELRLKDGQREFAAFLAYESGK 52 >UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI Length = 50 Score = 39.7 bits (91), Expect = 0.031, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 22 KYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEAR 67 K ++ L+ +C T + +L+ R+ LCE++I G T V V AYE+ Sbjct: 5 KAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 50 >UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MPJ9_ENTS8 Length = 56 Score = 38.1 bits (87), Expect = 0.085, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 24/45 (53%) Query: 23 YALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEAR 67 Y L L VC T+L F+L+ + LCEL I G+ V LA + Sbjct: 12 YLLACLFMVCITILIFALMNQGTLCELTIRSGSQEVAAKLACTGK 56 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.323 0.133 0.356 Lambda K H 0.267 0.0402 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 322,823,109 Number of Sequences: 3077464 Number of extensions: 7682821 Number of successful extensions: 28285 Number of sequences better than 1.0e-01: 20 Number of HSP's better than 0.1 without gapping: 50 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 28233 Number of HSP's gapped (non-prelim): 51 length of query: 68 length of database: 1,040,396,356 effective HSP length: 40 effective length of query: 28 effective length of database: 917,297,796 effective search space: 25684338288 effective search space used: 25684338288 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 87 (38.1 bits)