BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (44 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P76061 Uncharacterized protein ydaG n=10 Tax=Escherichi...    94   1e-18
UniRef50_C6EFM8 Predicted protein n=3 Tax=Escherichia coli RepID...    87   2e-16

>UniRef50_P76061 Uncharacterized protein ydaG n=10 Tax=Escherichia coli
          RepID=YDAG_ECOLI
          Length = 44

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MVHYEVVQYLMDCCGITYNQAVQALRSNDWDLWQAEVAIRSNKM 44
          MVHYEVVQYLMDCCGITYNQAVQALRSNDWDLWQAEVAIRSNKM
Sbjct: 1  MVHYEVVQYLMDCCGITYNQAVQALRSNDWDLWQAEVAIRSNKM 44


>UniRef50_C6EFM8 Predicted protein n=3 Tax=Escherichia coli RepID=C6EFM8_ECOBD
          Length = 44

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/44 (88%), Positives = 42/44 (95%)

Query: 1  MVHYEVVQYLMDCCGITYNQAVQALRSNDWDLWQAEVAIRSNKM 44
          MVHYEVVQYLMDCCGITY+ AVQALRSNDWDLWQAE +IR+NKM
Sbjct: 1  MVHYEVVQYLMDCCGITYSPAVQALRSNDWDLWQAEASIRNNKM 44


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_C6EFM8 Predicted protein n=3 Tax=Escherichia coli RepID...    79   4e-14
UniRef50_P76061 Uncharacterized protein ydaG n=10 Tax=Escherichi...    76   3e-13

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_C6EFM8 Predicted protein n=3 Tax=Escherichia coli RepID=C6EFM8_ECOBD
          Length = 44

 Score = 79.3 bits (194), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 39/44 (88%), Positives = 42/44 (95%)

Query: 1  MVHYEVVQYLMDCCGITYNQAVQALRSNDWDLWQAEVAIRSNKM 44
          MVHYEVVQYLMDCCGITY+ AVQALRSNDWDLWQAE +IR+NKM
Sbjct: 1  MVHYEVVQYLMDCCGITYSPAVQALRSNDWDLWQAEASIRNNKM 44


>UniRef50_P76061 Uncharacterized protein ydaG n=10 Tax=Escherichia coli
          RepID=YDAG_ECOLI
          Length = 44

 Score = 76.2 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/44 (100%), Positives = 44/44 (100%)

Query: 1  MVHYEVVQYLMDCCGITYNQAVQALRSNDWDLWQAEVAIRSNKM 44
          MVHYEVVQYLMDCCGITYNQAVQALRSNDWDLWQAEVAIRSNKM
Sbjct: 1  MVHYEVVQYLMDCCGITYNQAVQALRSNDWDLWQAEVAIRSNKM 44


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.324    0.140    0.468 

Lambda     K      H
   0.267   0.0420    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,069,942
Number of Sequences: 3077464
Number of extensions: 3779775
Number of successful extensions: 13833
Number of sequences better than 1.0e-01: 2
Number of HSP's better than  0.1 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13829
Number of HSP's gapped (non-prelim): 4
length of query: 44
length of database: 1,040,396,356
effective HSP length: 18
effective length of query: 26
effective length of database: 985,002,004
effective search space: 25610052104
effective search space used: 25610052104
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 87 (38.1 bits)