BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (232 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AE89 Transcriptional regulatory protein cpxR n=110 Ta... 467 e-130 UniRef50_Q12IJ0 Two component transcriptional regulator, winged ... 247 2e-64 UniRef50_P44895 Transcriptional regulatory protein cpxR homolog ... 241 1e-62 UniRef50_B3PFT8 AbfR arabinofuranosidase two component system re... 220 3e-56 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 216 5e-55 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 213 3e-54 UniRef50_B4S0I1 Transcriptional regulatory protein CpxR n=12 Tax... 206 6e-52 UniRef50_A5W315 Two component transcriptional regulator, winged ... 206 7e-52 UniRef50_A3WKN2 Response regulator (CheY,wHTH domains) n=1 Tax=I... 204 1e-51 UniRef50_A0LCI2 Two component transcriptional regulator, winged ... 204 3e-51 UniRef50_Q484N4 Transcriptional regulatory protein CpxR n=1 Tax=... 202 5e-51 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 197 2e-49 UniRef50_Q2BRQ1 Transcriptional regulatory protein CpxR (Fragmen... 192 6e-48 UniRef50_UPI0000E0E6C8 Transcriptional regulatory protein CpxR n... 192 1e-47 UniRef50_Q15TH0 Two component transcriptional regulator, winged ... 187 2e-46 UniRef50_C6CHY9 Two component transcriptional regulator, winged ... 187 2e-46 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 185 1e-45 UniRef50_Q1QBE9 Two component transcriptional regulator, winged ... 184 2e-45 UniRef50_A4VMA3 DNA-binding response regulator n=8 Tax=Pseudomon... 183 5e-45 UniRef50_A3JEV6 Two comoponent transcriptional regulator, winged... 181 2e-44 UniRef50_D1U362 Two component transcriptional regulator, winged ... 181 2e-44 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 181 2e-44 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 180 3e-44 UniRef50_A4XQE6 Two component transcriptional regulator, winged ... 179 5e-44 UniRef50_Q020N6 Two component transcriptional regulator, winged ... 178 1e-43 UniRef50_A9FFH2 Family membership n=32 Tax=Bacteria RepID=A9FFH2... 177 2e-43 UniRef50_A8GHG0 Two component transcriptional regulator, winged ... 177 2e-43 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 176 8e-43 UniRef50_Q1ZEN5 Transcriptional regulatory protein CpxR n=1 Tax=... 174 2e-42 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 174 2e-42 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 172 1e-41 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 171 1e-41 UniRef50_B1KFK3 Two component transcriptional regulator, winged ... 171 2e-41 UniRef50_B8G179 Two component transcriptional regulator, winged ... 170 3e-41 UniRef50_D1C280 Two component transcriptional regulator, winged ... 169 5e-41 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 169 6e-41 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 169 9e-41 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 167 2e-40 UniRef50_C0N4R8 Response regulator receiver domain protein n=3 T... 167 2e-40 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 167 3e-40 UniRef50_B5ESV4 Transcriptional regulatory protein CpxR n=22 Tax... 167 3e-40 UniRef50_Q2S740 Response regulator consisting of a CheY-like rec... 167 3e-40 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 167 4e-40 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 166 4e-40 UniRef50_Q7ULL1 Two-component system response regulator n=1 Tax=... 166 8e-40 UniRef50_A6TSQ9 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 165 1e-39 UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV... 164 2e-39 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 164 2e-39 UniRef50_B8JG70 Two component transcriptional regulator, winged ... 164 3e-39 UniRef50_C4ZB82 Putative uncharacterized protein n=1 Tax=Eubacte... 164 3e-39 UniRef50_A6BB82 Transcriptional regulator CpxR n=2 Tax=Vibrio pa... 164 3e-39 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 163 4e-39 UniRef50_A9D5A2 Osmolarity response regulator n=1 Tax=Hoeflea ph... 163 5e-39 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 163 5e-39 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 163 5e-39 UniRef50_D1U371 Two component transcriptional regulator, winged ... 162 7e-39 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 162 8e-39 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 162 8e-39 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 162 8e-39 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 162 9e-39 UniRef50_C6BZU5 Two component transcriptional regulator, winged ... 162 1e-38 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 162 1e-38 UniRef50_Q2BGC6 DNA-binding response regulator n=1 Tax=Neptuniib... 161 1e-38 UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromo... 161 1e-38 UniRef50_Q0JZE8 Response regulator, OmpR-family n=2 Tax=Cupriavi... 161 1e-38 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 160 3e-38 UniRef50_Q1IHT8 Two component transcriptional regulator, winged ... 160 3e-38 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 160 3e-38 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 160 4e-38 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 160 5e-38 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 159 5e-38 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 159 5e-38 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 159 5e-38 UniRef50_C1SP47 Response regulator with CheY-like receiver domai... 159 5e-38 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 159 6e-38 UniRef50_Q1N0E1 DNA-binding response regulator n=1 Tax=Bermanell... 159 6e-38 UniRef50_B4WSE4 Response regulator receiver domain protein n=1 T... 159 6e-38 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 159 7e-38 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 159 8e-38 UniRef50_A6G4N0 DNA-binding response regulator n=1 Tax=Plesiocys... 159 9e-38 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 159 9e-38 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 159 1e-37 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 159 1e-37 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_B0SB02 Sensor protein of a two-component response regul... 158 1e-37 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 158 1e-37 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 158 1e-37 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 158 1e-37 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 158 1e-37 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 158 2e-37 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 158 2e-37 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 157 2e-37 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 157 2e-37 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 157 3e-37 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 157 4e-37 UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostri... 157 4e-37 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 157 4e-37 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 156 5e-37 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 156 5e-37 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 156 6e-37 UniRef50_C0CWY8 Putative uncharacterized protein n=1 Tax=Clostri... 156 6e-37 UniRef50_C6D1N2 Two component transcriptional regulator, winged ... 156 6e-37 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 156 7e-37 UniRef50_A9KX94 Two component transcriptional regulator, winged ... 156 7e-37 UniRef50_Q188S4 Putative lantibiotic resistance two-component re... 155 8e-37 UniRef50_C5CP31 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 155 1e-36 UniRef50_A1U6I5 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_A1VTZ3 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphap... 155 1e-36 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 155 1e-36 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 154 2e-36 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 154 2e-36 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 154 2e-36 UniRef50_C4TUI5 Response regulator consisting of a CheY-like rec... 154 2e-36 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 154 2e-36 UniRef50_A3Y9U3 Response regulator protein n=1 Tax=Marinomonas s... 154 2e-36 UniRef50_B0KI24 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 154 2e-36 UniRef50_A7HP70 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 154 3e-36 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_C4L340 Two component transcriptional regulator, winged ... 154 3e-36 UniRef50_C8P1C0 Regulatory protein VanR n=1 Tax=Erysipelothrix r... 154 3e-36 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 154 3e-36 UniRef50_Q7UJC9 Probable two-component response regulator n=1 Ta... 154 3e-36 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 153 3e-36 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 153 4e-36 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 153 4e-36 UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacilla... 153 4e-36 UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regu... 153 5e-36 UniRef50_C6I3R1 Two-component system response regulator n=20 Tax... 153 5e-36 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 153 5e-36 UniRef50_A5VZA1 Two component transcriptional regulator, winged ... 153 6e-36 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 152 6e-36 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 152 7e-36 UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Ta... 152 8e-36 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 152 8e-36 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 152 8e-36 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 152 8e-36 UniRef50_B8IGE5 Two component transcriptional regulator, winged ... 152 9e-36 UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=... 152 9e-36 UniRef50_A3QF24 Two component transcriptional regulator, winged ... 152 9e-36 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 152 1e-35 UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1... 152 1e-35 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 152 1e-35 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 152 1e-35 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 152 1e-35 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 151 1e-35 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 151 2e-35 UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splen... 151 2e-35 UniRef50_Q3K1Z3 DNA-binding response regulator n=9 Tax=Bacteria ... 151 2e-35 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 151 2e-35 UniRef50_B1QW07 Regulatory protein VanR n=6 Tax=Clostridiales Re... 151 2e-35 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 150 2e-35 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 150 2e-35 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 150 3e-35 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 150 3e-35 UniRef50_Q212W6 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 150 3e-35 UniRef50_A8FS20 Response regulator consisting of a CheY-like rec... 150 3e-35 UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria... 150 3e-35 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 150 3e-35 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 150 4e-35 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 150 4e-35 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 150 4e-35 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 150 4e-35 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 150 4e-35 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 150 4e-35 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 150 4e-35 UniRef50_A1RJP8 Two component transcriptional regulator, winged ... 150 5e-35 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 150 5e-35 UniRef50_B6R185 Response regulator in two-component regulatory s... 149 5e-35 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 149 6e-35 UniRef50_Q1IY67 Two component transcriptional regulator, winged ... 149 6e-35 UniRef50_A4CEI9 Transcriptional regulatory protein RstA n=3 Tax=... 149 6e-35 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 149 6e-35 UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacte... 149 7e-35 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 149 8e-35 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 149 8e-35 UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Olig... 149 9e-35 UniRef50_B7IXR9 DNA-binding response regulator n=167 Tax=Bacilli... 149 9e-35 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 149 9e-35 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 149 1e-34 UniRef50_A9AXY0 Two component transcriptional regulator, winged ... 149 1e-34 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 149 1e-34 UniRef50_Q1GLX1 Two component transcriptional regulator, winged ... 149 1e-34 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 148 1e-34 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 148 1e-34 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_C2Z9H3 DNA-binding response regulator n=4 Tax=Bacillace... 148 1e-34 UniRef50_A9DQD6 Probable two-component response regulator protei... 148 1e-34 UniRef50_B0S1J7 Two-component response regulator n=16 Tax=Clostr... 148 1e-34 UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerof... 148 2e-34 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 148 2e-34 UniRef50_D0LHP7 Two component transcriptional regulator, winged ... 148 2e-34 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 148 2e-34 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 148 2e-34 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae ... 147 2e-34 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_D2LRZ1 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_A6TM13 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_Q2S9I1 Response regulator consisting of a CheY-like rec... 147 3e-34 UniRef50_B2SJA5 Two-component system regulatory protein n=11 Tax... 147 3e-34 UniRef50_C6VZ09 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_UPI000196BAD1 hypothetical protein CATMIT_00504 n=1 Tax... 147 4e-34 UniRef50_A6VT30 Two component transcriptional regulator, winged ... 147 4e-34 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 147 4e-34 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 147 4e-34 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 146 4e-34 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 146 5e-34 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 146 5e-34 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 146 5e-34 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 146 5e-34 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 146 6e-34 UniRef50_B3DXI2 Phosphate regulon transcriptional regulatory pro... 146 6e-34 UniRef50_Q01YI3 Two component transcriptional regulator, winged ... 146 7e-34 UniRef50_A7VCT3 Putative uncharacterized protein n=1 Tax=Clostri... 146 7e-34 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 145 7e-34 UniRef50_B9E984 Putative uncharacterized protein n=1 Tax=Macroco... 145 7e-34 UniRef50_A3Y9W5 DNA-binding response regulator n=1 Tax=Marinomon... 145 8e-34 UniRef50_C1SIE7 Response regulator with CheY-like receiver domai... 145 9e-34 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 145 1e-33 UniRef50_A7HMZ4 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 145 1e-33 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_Q488T3 DNA-binding response regulator n=4 Tax=Alteromon... 145 1e-33 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_A9AIE8 Two component transcriptional regulator, winged ... 145 1e-33 >UniRef50_P0AE89 Transcriptional regulatory protein cpxR n=110 Tax=Bacteria RepID=CPXR_ECO57 Length = 232 Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust. Identities = 232/232 (100%), Positives = 232/232 (100%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW Sbjct: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH Sbjct: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 >UniRef50_Q12IJ0 Two component transcriptional regulator, winged helix family n=3 Tax=Gammaproteobacteria RepID=Q12IJ0_SHEDO Length = 226 Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 134/230 (58%), Positives = 174/230 (75%), Gaps = 6/230 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 MN+ILL+DDD L+ LL +LLE+EGF++ A+DG+Q LD L DL+LLDVM+PK NG Sbjct: 1 MNRILLIDDDHGLSELLAQLLELEGFSLTQAYDGQQGLDNALKQEFDLILLDVMLPKLNG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D LKALRQ QTPV+MLTARG E+DRV+GLE+GADDYLPKPFNDRELVARIRAILRR+ Sbjct: 61 FDLLKALRQHKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAILRRAQ 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + ++ L+ + L+P RQE S Q + LTGTEF+LL+ L + G++VS+E Sbjct: 121 KPANEPRDE-----LKCGDIKLDPARQEVSCKEQLILLTGTEFSLLHALIKQAGELVSKE 175 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 LS+ VL K+L PFDR++DMH+SNLR+K P+R DG P KT+RG+GY+ + Sbjct: 176 TLSETVLHKKLMPFDRSLDMHLSNLRKKFPERADGRPRVKTIRGQGYIWI 225 >UniRef50_P44895 Transcriptional regulatory protein cpxR homolog n=174 Tax=Bacteria RepID=CPXR_HAEIN Length = 227 Score = 241 bits (616), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 136/230 (59%), Positives = 170/230 (73%), Gaps = 3/230 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 M+K+LLVDDD ELT LL LLE+EGF+V A++G +AL L++S L+LLDVMMPK NGI Sbjct: 1 MSKLLLVDDDIELTELLSTLLELEGFDVETANNGLEALQKLNESYKLVLLDVMMPKLNGI 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 +TLK +R+ PV+MLTARG ++DRVLGLELGADD LPKPFNDREL+ARI+AILRR Sbjct: 61 ETLKEIRKVSNVPVMMLTARGEDIDRVLGLELGADDCLPKPFNDRELIARIKAILRR--- 117 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 S NN + L D + L+ A+++ + L LT EF +L LL + G VVSRE Sbjct: 118 SASPSNNISNVEILSFDGITLHFSHGIATYNEENLNLTDYEFKILCLLLKSKGNVVSREE 177 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 LS EV+ K LTPFDR++DMHISNLRRKLP RK+ WFKTLRG+GY +V+ Sbjct: 178 LSLEVMEKPLTPFDRSLDMHISNLRRKLPKRKNKPSWFKTLRGKGYALVT 227 >UniRef50_B3PFT8 AbfR arabinofuranosidase two component system response regulator n=26 Tax=Proteobacteria RepID=B3PFT8_CELJU Length = 232 Score = 220 bits (561), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 113/229 (49%), Positives = 161/229 (70%), Gaps = 4/229 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M KILL+DDD+EL LL E L EGF V + HDG+QA++L + + L++LDVM+P ++G Sbjct: 1 MLKILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D LK LRQ QTPVIMLTA+G +DRV+GLE+GADDYL KP + RELVARIRAILRR+ Sbjct: 61 FDVLKILRQHSQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRRAS 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 +E Q N L L L+ G + A++D Q + LTGTEF++L +L + GQV+S++ Sbjct: 121 IAEANQPN---VERLTSGKLSLHLGTRTATWDNQDVVLTGTEFSVLEILVRRAGQVISKD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 ++++ L ++LTP+DR+ID+H+SN+R+K+ +RG GY++ Sbjct: 178 DMTEQALNRKLTPYDRSIDVHVSNIRKKIALAGSTKDLIINVRGAGYML 226 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 216 bits (550), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 114/227 (50%), Positives = 151/227 (66%), Gaps = 5/227 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDT 62 ILL+DDDREL L+ L EGF+V HDG L L D +L ++D+MMP KNG+D Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ LRQ+ PVIMLTARG E+DR+LGLELGADDY+PKP N REL ARIRA+LRR S+ Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRR---SD 119 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 QQ +D+ T +L +P + + G+ ++LT TE+ +L +L QH G+VVS+ LS Sbjct: 120 TQQESDDKQET-RFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSKYELS 178 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 Q LGKR PFDR +D+HI +LR+K+ + KT+R G+L V Sbjct: 179 QAALGKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFV 225 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 108/231 (46%), Positives = 165/231 (71%), Gaps = 5/231 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M K+LL DDD L+ L+KE + EG+ V A +G +AL+L+ D D+++LDVMMP+ +G Sbjct: 1 MVKLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +TLK +R PVIMLTA+G ++DR+LGLE+GADDYL KPFN REL+ARI+AILRR+ Sbjct: 61 FETLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRA- 119 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q+ D+ + +++ ++L + +G+ +ELT +E+TLL + GQV++++ Sbjct: 120 ---SQEREDDPTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQ 176 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 LS++ LG++LT +DR++DMHISNLR+K+ + ++G P KT+RG GY+ VS Sbjct: 177 ELSEKALGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVS 227 >UniRef50_B4S0I1 Transcriptional regulatory protein CpxR n=12 Tax=Bacteria RepID=B4S0I1_ALTMD Length = 247 Score = 206 bits (524), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 116/238 (48%), Positives = 155/238 (65%), Gaps = 14/238 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD--LLDDSIDLLLLDVMMPKKN 58 + IL++DDD ELT +L L G+ V V ++GE+ L + DL+LLDVMMPK + Sbjct: 17 LQSILVIDDDLELTEMLATYLSGMGYQVQVRNNGEEGLSEAVSGRHYDLILLDVMMPKMD 76 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G D LK LR +H TPV+MLTARG + DR+LGLE+GADDYLPKPFN RELVARI+AI+RR Sbjct: 77 GFDVLKKLRSSHSTPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRH 136 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + S + L V+ ++L+P Q A D L LT TEF +L LL + Q V++ Sbjct: 137 NLSSSGGAVEQ---DLFVNGILLSPSSQLAKVDDVELTLTTTEFLILRLLMLNAAQRVTK 193 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLP----DRKDGHPWFKTLRGRGYLMVSAS 232 E +S ++LGK L FDR+IDMH+SNLR+K+ D K KT+RG GY+++ S Sbjct: 194 EEISLKILGKPLQAFDRSIDMHVSNLRKKIGAVAVDEK-----IKTIRGVGYMLIVGS 246 >UniRef50_A5W315 Two component transcriptional regulator, winged helix family n=27 Tax=Proteobacteria RepID=A5W315_PSEP1 Length = 253 Score = 206 bits (523), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 109/234 (46%), Positives = 155/234 (66%), Gaps = 8/234 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQA-LDLLDDSIDLLLLDVMMPKKNG 59 M +LLVDDDRELT +L L EGF + GE+ L + +++LDVM+P +G Sbjct: 21 MIPVLLVDDDRELTEMLSLYLAREGFQAMAVDTGEEGETQALSGNFQVVVLDVMLPGISG 80 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 I+ L+ +R Q PV++LTARG +DR+ GLELGADDY+PKP + ELVAR+RAILRR Sbjct: 81 IEVLRRVRARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRRV- 139 Query: 120 WSEQQQNNDNGSP----TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQV 175 + D +P + AL + PGR+EA + TLELTG+EF+LL +LA+ GQ+ Sbjct: 140 --KPHLMGDTSAPEVPEQVRSGALKMWPGRREARWGTATLELTGSEFSLLEVLARQAGQL 197 Query: 176 VSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 VS++ LS LG+ LT +DR ID+H+S++R+KL R DG W +++RG GY+++ Sbjct: 198 VSKQDLSLNALGRPLTRYDRRIDVHVSSIRQKLGPRADGSSWIQSVRGMGYMLI 251 >UniRef50_A3WKN2 Response regulator (CheY,wHTH domains) n=1 Tax=Idiomarina baltica OS145 RepID=A3WKN2_9GAMM Length = 225 Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 109/231 (47%), Positives = 156/231 (67%), Gaps = 11/231 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 + +LL+DDD E++++L EL + E + V DG + LD L+ +L+LLDVM+P +G+ Sbjct: 3 HSVLLIDDDHEMSAMLTELFKREAVELTVVDDGVKGLDAALNGDFELILLDVMLPGIDGM 62 Query: 61 DTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 L+ LRQ H+ T V+MLTARG + DRV+GLELGADDYLPKPFN REL+AR+RA+LRR+ Sbjct: 63 QLLQRLRQQHRDTAVLMLTARGDDDDRVMGLELGADDYLPKPFNPRELIARVRALLRRTA 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + Q L V L+P + E + D Q L +T TEF +L L Q GQ+VS++ Sbjct: 123 NTMMQNE------VLTVSGFTLDPSKAEVTCDRQPLVMTPTEFDILRCLMQQAGQMVSKD 176 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 LS LG+++ PFDR++D+HISN+R+KLP + +T+RGRGY +V+ Sbjct: 177 QLSVAALGRKMGPFDRSLDVHISNIRKKLPANPE---RIQTVRGRGYRLVN 224 >UniRef50_A0LCI2 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A0LCI2_MAGSM Length = 231 Score = 204 bits (518), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 110/228 (48%), Positives = 143/228 (62%), Gaps = 6/228 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 MN ILLVDDD++L ++L E L EGF+ + H G +AL+ L + L+LDVM+P NG Sbjct: 1 MNTILLVDDDKQLCAMLAEYLYEEGFSCDLCHSGTEALNRALQSPYEALVLDVMLPGING 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D L+ LRQ + PVIMLTARG E D ++GLE+GADDYL KP N R L AR+RA+LRR+ Sbjct: 61 FDLLRKLRQQTEVPVIMLTARGEETDSIVGLEIGADDYLSKPCNPRVLAARLRAVLRRTG 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S L AL L P ++ +ELT EF +L L + GQVV +E Sbjct: 121 GERA-----TSSEQLNQGALTLYPMARKVMLGAVEIELTSAEFNILEQLLREAGQVVDKE 175 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 LSQ+ LG++ P+DR++DMHIS+LR+KL D P TLRG GYL Sbjct: 176 RLSQKGLGRKWMPYDRSVDMHISSLRKKLAATGDSSPRIHTLRGSGYL 223 >UniRef50_Q484N4 Transcriptional regulatory protein CpxR n=1 Tax=Colwellia psychrerythraea 34H RepID=Q484N4_COLP3 Length = 242 Score = 202 bits (515), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 108/229 (47%), Positives = 152/229 (66%), Gaps = 4/229 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGIDT 62 ILL+DDD EL+ LL E LE E F V DG L DDS DL+LLDVMMP NG + Sbjct: 11 ILLIDDDAELSELLTEYLESENFKVTSCLDGASGLAKAFDDSFDLILLDVMMPILNGFEV 70 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 LKAL H+TP++MLTA+G + DR+LGLELGADDYL KPF REL+ARI+AILRR + Sbjct: 71 LKALGGNHKTPILMLTAKGDDNDRILGLELGADDYLAKPFKHRELLARIKAILRRISIVK 130 Query: 123 QQQNNDNGSPT--LEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 Q +PT L ++ + +N +E + + LELTGTE+ +L + ++ +++S+ Sbjct: 131 SQSTLAVNAPTKQLTINQVKVNQATREITCRERLLELTGTEYLVLVYMIENHSKIISKAE 190 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 +S++VL ++L+P+DR +D+H+ N+RRKL D KT+RG GY+ + Sbjct: 191 ISEKVLQRKLSPYDRTVDVHVGNVRRKLL-AIDPIDKMKTVRGAGYVFL 238 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 105/232 (45%), Positives = 152/232 (65%), Gaps = 4/232 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 + ILL+DDD++L LL E L+ EG+ + AH GE ++ + DL+LLDVMMP +G Sbjct: 4 HSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGIDGF 63 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 +TLK +R++ PV+MLTA+G E DR+LGLELGADDYL KP++ REL+ARI+A+LRR Sbjct: 64 ETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIEL 123 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + Q+ +DNG L + + LN DG+ + +T +EF +L +L G+ V +E Sbjct: 124 DKNQKEDDNG--ILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPKED 181 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L EVLG+ + +DR+IDMH+SN+RRKL + +T+RG GY+ V S Sbjct: 182 LYLEVLGREIMAYDRSIDMHVSNVRRKLGGTTE-QSKIQTIRGIGYMFVDPS 232 >UniRef50_Q2BRQ1 Transcriptional regulatory protein CpxR (Fragment) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BRQ1_9GAMM Length = 235 Score = 192 bits (489), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 103/231 (44%), Positives = 149/231 (64%), Gaps = 4/231 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS--IDLLLLDVMMPKKNG 59 ++L+VDDD EL L+ + L EG+ + AH+ ++A + L S L++LDVMMP + G Sbjct: 4 QRLLMVDDDVELCELIGDYLRHEGYLIEFAHNADEACEQLKRSERFALMILDVMMPGRTG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ L+ +R Q PVIMLT RG ++DR+LGLE+GADDYL KP N REL+ARIRA+LRR+ Sbjct: 64 LELLQQIRPKVQIPVIMLTGRGEDIDRILGLEMGADDYLSKPCNPRELLARIRAVLRRA- 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 QQ+ +E + L+PG +E +G+ LELTGTEF +L L + G V+ +E Sbjct: 123 -EPQQRTTLFPDSLVEHAGVTLDPGLREVRINGELLELTGTEFNVLAYLIANAGSVLEKE 181 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L++ VL ++L +DRAID+H+S +R+KL KT+RG GY V Sbjct: 182 QLTELVLHRKLAAYDRAIDVHVSRVRQKLAKHLSDAELIKTIRGVGYQFVK 232 >UniRef50_UPI0000E0E6C8 Transcriptional regulatory protein CpxR n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E6C8 Length = 238 Score = 192 bits (487), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 105/232 (45%), Positives = 153/232 (65%), Gaps = 7/232 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M+K+L++DDD LT +LKE L +V V +D +++L D+LLLDVMMP+ +G Sbjct: 1 MHKLLMIDDDIALTDMLKEYLSEHSLDVSVENDPIAGIEVLRSHHYDVLLLDVMMPELDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + L+ +RQ PVIMLTA+G + DR+LGLELGADDYLPKPFN RELVARI+A+ RR + Sbjct: 61 FEVLRQIRQFSSIPVIMLTAKGDDFDRILGLELGADDYLPKPFNQRELVARIKALTRR-Y 119 Query: 120 WSEQQQNNDNGSPT----LEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQV 175 + Q +P L + +V++ R +AS + Q + LT TE +L+ L + G+V Sbjct: 120 VDQSPQFTSASAPEKPHLLSLHNIVIDIQRLQASINQQNVALTATELHMLHYLMLNAGKV 179 Query: 176 VSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 ++++ LSQ +L +RL+ FDR++DMH+SN+R+KL KT+RG GYL Sbjct: 180 ITKDTLSQAILHRRLSAFDRSLDMHVSNIRKKLA-LHGVTDVIKTMRGVGYL 230 >UniRef50_Q15TH0 Two component transcriptional regulator, winged helix family n=5 Tax=Gammaproteobacteria RepID=Q15TH0_PSEA6 Length = 244 Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 105/234 (44%), Positives = 149/234 (63%), Gaps = 11/234 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD--LLDDSIDLLLLDVMMPKKNGI 60 KILLVDDD L SLL E L+ EGF V H G A + L D D ++LD+MMP +G+ Sbjct: 7 KILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIMMPGMSGL 66 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D L+++R Q P++MLT RG ++DR++GLE+GADDYL KP N REL ARI+AI+RR Sbjct: 67 DVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRR--- 123 Query: 121 SEQQQNNDNGSPTLEVDALV----LNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 +E N T+ V AL+ L+ G + A + TL LT EF L LL + GQ + Sbjct: 124 TENSLGNGAAGKTI-VHALLHGIELDTGTRTAVVNNTTLPLTSAEFNALSLLMERAGQTI 182 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 +++ ++QEVL + L +DRA+D+HIS +R+KL + + K++RG GY M++ Sbjct: 183 TKQDMTQEVLNRPLEAYDRAMDVHISRIRQKLSSQGI-NDVIKSIRGVGYQMLT 235 >UniRef50_C6CHY9 Two component transcriptional regulator, winged helix family n=37 Tax=Gammaproteobacteria RepID=C6CHY9_DICZE Length = 232 Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 96/225 (42%), Positives = 148/225 (65%), Gaps = 4/225 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGID 61 KILLVDDD EL +L E L EGF+ G++ +D + D ++LD+M+P +GID Sbjct: 8 KILLVDDDAELGHMLCEYLTAEGFSTSQVMTGKEGVDGAMSDQYTAMILDIMLPDMSGID 67 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ +R+ P+IMLTA+G +DRV+GLE+GADDY+PKP RELVAR+RA+LRR + Sbjct: 68 VLRQVRRNRSIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRR-YED 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + +++ D G T+ LV++P + + + G+ +LT +EF LL LL + +VV+++ L Sbjct: 127 KAEKSEDAG--TINYGELVISPSTRSSEWRGKAFDLTASEFNLLELLIRSSERVVTKDEL 184 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 S++ LG+R +DR++D+HISN+R+KL +T+R GY Sbjct: 185 SEKCLGRRREAYDRSVDVHISNIRQKLAALDGCSLTIETVRSVGY 229 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 151/227 (66%), Gaps = 2/227 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 K+++VDD++ + +L+ L+ EG++V A+DG A+DL+ ++ D++LLD+M+P ++G++ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ ++ P+IMLTA+ SE+D+VLGLELGADDY+ KPF+ REL+AR++A LRR H+S Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR-HYS 122 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + Q+ N + + + +V+ P G+ +ELT EF L + L++H+GQV++REHL Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 Q V G R +D+ I LR K+ D + T RG GY + Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229 >UniRef50_Q1QBE9 Two component transcriptional regulator, winged helix family n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QBE9_PSYCK Length = 230 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 109/239 (45%), Positives = 148/239 (61%), Gaps = 20/239 (8%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI------DLLLLDVMM 54 M+ ILL DDD ELT LL+E L G HDGE ++ L ++ DLL+LD+MM Sbjct: 1 MSNILLGDDDEELTQLLQEYLHNHGVRCDCVHDGEAVIERLKTTMQDSSPYDLLVLDIMM 60 Query: 55 PKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAI 114 PK +G+ L+ L PVIMLTA+G E+DR++GLELGADDY+ KP N REL+ARI A+ Sbjct: 61 PKIDGLSVLRQLPAISDIPVIMLTAKGEEIDRIIGLELGADDYITKPCNPRELLARINAV 120 Query: 115 LRRS----HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQ 170 ++R+ ++EQ L L L+ ++ DG L+LTGTEF LL L + Sbjct: 121 IKRTSIAVSFTEQL--------PLPSSRLYLDQQQRLCQIDGVELQLTGTEFDLLLALLR 172 Query: 171 HLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 G+VVS+ LSQ VL + L PFDR++D+H+S LR+KL D P K +RG+GY +V Sbjct: 173 QKGEVVSKSWLSQHVLQRELQPFDRSLDVHVSRLRKKLQPFHD-EP-IKAIRGKGYQLV 229 >UniRef50_A4VMA3 DNA-binding response regulator n=8 Tax=Pseudomonadaceae RepID=A4VMA3_PSEU5 Length = 225 Score = 183 bits (464), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 105/230 (45%), Positives = 142/230 (61%), Gaps = 11/230 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M+++LL+DDD+EL LL L EGF HDG+ A L ++LDVM+P +G Sbjct: 1 MSELLLIDDDQELCELLISWLAQEGFVAHACHDGQSAKQALAQYQPAAVVLDVMLPDGSG 60 Query: 60 IDTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 ++ LK LR H PV+ML+ RG LDR+LGLELGADDYL KP + REL AR+RA+LRRS Sbjct: 61 LELLKQLRSEHPDLPVLMLSGRGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRS 120 Query: 119 HWSEQQQNNDNGSPT-LEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + +P+ LE+ L +P R AS G + LT +E +L L G+ + Sbjct: 121 QPA--------AAPSQLELGDLSYSPARGVASVGGHDVSLTLSEGRILEALLAQAGEPID 172 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 ++ L+Q LG++LT +DR++DMH+SNLRRKL DG P LR RGYL Sbjct: 173 KQALAQHALGRKLTLYDRSLDMHVSNLRRKLGPHADGSPRIVALRSRGYL 222 >UniRef50_A3JEV6 Two comoponent transcriptional regulator, winged helix family protein n=2 Tax=Marinobacter RepID=A3JEV6_9ALTE Length = 228 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 101/226 (44%), Positives = 143/226 (63%), Gaps = 7/226 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 N++LL++DD EL LL L +GF V A +G+ L L +S D+++LD+M+P NG+ Sbjct: 3 NRVLLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESCDIVVLDIMLPDINGL 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D L+ LR + PVI+LTA G E DR++G E+GADDY+ KP N RELVAR+ A+LRR W Sbjct: 63 DVLRQLRVSAHLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRRIAW 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ +D+ S L L P + +G L+LT TE+ +L +L H G VV + Sbjct: 123 DQKADLDDSRS----YGDLRLEPDHRRVRQNGTPLDLTATEYEVLQVLLAHAGSVVRKTD 178 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L Q LG+RL +DR +DMHISNLR+KL + + P +T+RG GY Sbjct: 179 LMQWALGRRLETYDRTLDMHISNLRKKLGNEEP--PRIETVRGLGY 222 >UniRef50_D1U362 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U362_9DELT Length = 236 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 104/235 (44%), Positives = 145/235 (61%), Gaps = 12/235 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 MNK+LL+DDD EL LL LE EGF + ++GE L + L++LDVM+P +G Sbjct: 1 MNKVLLIDDDPELAELLGRYLEGEGFALDATYNGESGLAQARSNEYCLIILDVMLPDTSG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + L LR PVIMLT RG E+DRV+GLE+GADDY+ KPF REL+AR+RA+LRR Sbjct: 61 FNVLSRLRGDSAVPVIMLTGRGEEIDRVVGLEMGADDYVSKPFPLRELLARMRAVLRR-- 118 Query: 120 WSEQQQNNDNGSPT-----LEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 ++ + D P ++V +++N G Q+ + + LT TEF L+ LA +LG Sbjct: 119 VGPERGDGDPQQPPRPQGDIKVGEILINRGAQQVTLSDAPVHLTSTEFGLIEQLALNLGN 178 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 +V RE L ++ LG+ D +++H+SNLRRKL GH KT+RGRGYL+ Sbjct: 179 IVQREDLMEKALGRDTDFDDYVLNVHMSNLRRKL----GGHASIKTIRGRGYLLA 229 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/228 (43%), Positives = 143/228 (62%), Gaps = 4/228 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGIDT 62 +L+VDDD +L +LL + LE G+ V GE ++ + S +++LD+MMP K+G++ Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ LR PVIMLTA+G + DR++GLELGADDY+ KPFN REL+ARI+A+LRR+ E Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGPE 126 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 NN+ S + V +VL+ Q+ +G +LEL+ TEF LL L + G+ ++R+ L Sbjct: 127 ---NNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLM 183 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 V GK FDR+ID+HIS LR D KT+ G GY+ VS Sbjct: 184 TSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVS 231 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 102/228 (44%), Positives = 144/228 (63%), Gaps = 8/228 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 ILLV+D++++ +L + L EGF V +A DG +AL + D DL++LD+M+P +G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 +K +RQ + TP+I+LTAR E+D++LGLELGADDY+ KPF+ REL RI+A+LRRS E Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 Q N + + L +NP R EA L LT TEF +L LLA++ GQV SR H+ Sbjct: 125 QVTN-------VSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHIL 177 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + V G ++R ID HISNLR K+ KT+ G GY +V+ Sbjct: 178 ERVFGDIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVA 225 >UniRef50_A4XQE6 Two component transcriptional regulator, winged helix family n=1 Tax=Pseudomonas mendocina ymp RepID=A4XQE6_PSEMY Length = 232 Score = 179 bits (455), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 104/228 (45%), Positives = 142/228 (62%), Gaps = 5/228 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 + +IL+V+DDR L + L ELL +G+ H GE L+ L ++ DLLLLDVM+P NG Sbjct: 5 LARILIVEDDRTLATQLGELLRGQGYATSACHLGEAGLETALREAPDLLLLDVMLPDVNG 64 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 L+ LR+ QTPVIMLTA G+E +R+ GL GADDYLPKPFN EL RI A+LRR Sbjct: 65 FSVLRRLREQQQTPVIMLTACGAEEERIRGLRHGADDYLPKPFNITELQLRIDAVLRR-- 122 Query: 120 WSEQQQNNDNGSP-TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + Q+ G P L+VD L L+ Q A G L LT +F LL+LL H G+ +S+ Sbjct: 123 -TRPQETARGGQPQQLQVDELHLDRHAQLARVAGCDLALTPLQFRLLWLLVSHRGEALSK 181 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 +L + L + + +DR++DMH+S +RR+L + G +TL GRGY Sbjct: 182 PYLYRMALEREYSQYDRSLDMHVSRIRRRLAEAGLGADRLQTLHGRGY 229 >UniRef50_Q020N6 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q020N6_SOLUE Length = 250 Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 99/227 (43%), Positives = 142/227 (62%), Gaps = 10/227 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 ILLV+DD ELTSL+ + GF V AHDG L ++ S DL++LDVM+P +G Sbjct: 25 RSILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGF 84 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + L+ LR+ TPVIMLTAR S+ DRV GL GADDYLPKPF EL+ARIRA+LRR+ Sbjct: 85 EVLRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRT-- 142 Query: 121 SEQQQNNDNGSPTL-EVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + D P + E L ++P + G+ +E+T EF +L +L + G+ V+R+ Sbjct: 143 ----GHTDAAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRD 198 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L+ + + TP++R++D+HIS+LR+KL +D +T+RG GY Sbjct: 199 ELTAVLYQRPATPYERSLDVHISHLRKKL--ERDDRSVIRTIRGVGY 243 >UniRef50_A9FFH2 Family membership n=32 Tax=Bacteria RepID=A9FFH2_SORC5 Length = 257 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 109/239 (45%), Positives = 146/239 (61%), Gaps = 12/239 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDG----EQALDLLDDSIDLLLLDVMMPKKN 58 +IL++DDD EL LL ELL EG+ V A D +A + + L++LDVM+P N Sbjct: 15 QILVIDDDAELCELLAELLGQEGYAVESARDAISGLARAQEERERPFTLVVLDVMLPGLN 74 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR- 117 G + L LRQ+ + PV+MLTARG ++DR++GLE+GADDYLPKPFN RELVAR+RA+ RR Sbjct: 75 GFEVLTRLRQSSRVPVLMLTARGEDVDRIVGLEMGADDYLPKPFNPRELVARVRALHRRA 134 Query: 118 -------SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQ 170 + + L VD L + P + G+ + LT EF LL +LA+ Sbjct: 135 SHAGAAAGPGAAAGPSAAEAQGALTVDDLEVLPAARRVRVRGEEVRLTTAEFDLLEVLAR 194 Query: 171 HLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 G VVSRE L++ VLG+RL +DR IDMH+SNLRRKL G KT+R GY++ Sbjct: 195 QAGTVVSREDLARRVLGRRLAAYDRGIDMHVSNLRRKLGPGPGGGERIKTVRNAGYILA 253 >UniRef50_A8GHG0 Two component transcriptional regulator, winged helix family n=11 Tax=Enterobacteriaceae RepID=A8GHG0_SERP5 Length = 226 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 97/225 (43%), Positives = 145/225 (64%), Gaps = 4/225 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGID 61 KILLVDDD EL ++L E L EGFN + G+ ++ L ++LD+M+P +GID Sbjct: 2 KILLVDDDLELGTMLSEYLTGEGFNATLVLTGKAGVEGALSGDYTAMILDIMLPDMSGID 61 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ +R+ + P+IMLTA+G +DRV+GLE+GADDY+PKP RELVAR+RA+LRR + Sbjct: 62 VLRDVRKKSRMPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRR--FD 119 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 E+ D+ + L LNP + + + G+ +LT +EF LL LL + +VVS++ L Sbjct: 120 ERPDEVDD-EIAINFGELTLNPSTRSSEWRGKAFDLTASEFNLLELLLRAPERVVSKDEL 178 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 S++ LG+ +DR++D+HISN+R+KL D +T+R GY Sbjct: 179 SEKGLGRPREAYDRSVDVHISNIRQKLGALTDNALSIETVRSIGY 223 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 176 bits (445), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 143/228 (62%), Gaps = 2/228 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGID 61 KI+++DDDR++ L+K+ L+ +GF+ G+ +L + DL++LD+M+P +NG+D Sbjct: 4 KIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENGLD 63 Query: 62 TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 K LR + P+IMLTA+G E+DR++GLE+GADDYLPKPFN REL+ARI +I RR Sbjct: 64 ICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHEM 123 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ N+ T++ D NP + D + ++LT EF+LL + ++ Q +SR+ Sbjct: 124 ELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLSRDQ 183 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + Q GK L FDR+ID+ IS +R+ + + + + KT G GY+ Sbjct: 184 IMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVF 231 >UniRef50_Q1ZEN5 Transcriptional regulatory protein CpxR n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZEN5_9GAMM Length = 233 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 105/230 (45%), Positives = 147/230 (63%), Gaps = 6/230 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 M K+LL+DDD+EL SLL + L E F V +A DGEQ L L D+L+LD MMP+ NG Sbjct: 1 MKKLLLIDDDKELVSLLSDFLRKENFIVDIAFDGEQGLQKALSGDYDMLILDAMMPRMNG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +D LK LRQ PV++L +G +D+ LG+ + ADDYL KPF +R+L+A+ +ILRR+ Sbjct: 61 MDMLKLLRQKSDVPVLILANKGDPIDKALGVAMNADDYLTKPFCERDLLAQTLSILRRN- 119 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q + D +D + + +Q+ T+ELT TE LL H G++ S+ Sbjct: 120 ---QHKKIDPKDMISYLDVQLYH-DQQQVICQNFTIELTTTELLLLETFLTHPGKIFSKV 175 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 LS+++LGK+L PFDR+IDMH+SN+RRKLP R DG+ K RG+GY+ V Sbjct: 176 ELSEDILGKKLLPFDRSIDMHLSNIRRKLPPRIDGNTRVKNFRGKGYMWV 225 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/229 (42%), Positives = 140/229 (61%), Gaps = 4/229 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 K+L+VDDD ++ +L LE EG++VI A DG +A+D D++LLDVM+P +G Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R+T P+IMLTAR E DR++GLELGADDY+ KPF+ +E++AR+RAI RR + Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 ++ D G L+V VL+ + + G +ELT TE+ LL L H GQV SR L Sbjct: 122 SRR---DGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQL 178 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 ++V ++R +D HI NLR+KL D + KT+ G GY +V Sbjct: 179 IEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVG 227 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 99/231 (42%), Positives = 143/231 (61%), Gaps = 8/231 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 +IL+VDDD++L L+ + L G++V AHDG + L++L ++LDVMMPK +G + Sbjct: 12 QILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFE 71 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 LK LR+ PV+MLTA G E DR++GLE+GADDYLPK F+ REL+AR+RA+ RR S Sbjct: 72 MLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRLS 131 Query: 122 E----QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + Q DN TL L ++ + A G+ L LT E+ LL LA+ +V+S Sbjct: 132 MDRTVKSQVKDN---TLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLS 188 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 R+ L V G+ FDR++D+HIS+LRRKL + + +T+R GY+ Sbjct: 189 RDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMF 239 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 137/230 (59%), Gaps = 2/230 (0%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL--DDSIDLLLLDVMMPKKNGID 61 I +VDDD E+ +LLK LE F V+ A GE L + +DL++LD+M+P ++G Sbjct: 7 IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQDGFA 66 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 ++LR Q PVIMLTA E+DR++GLE+GADDYL KPFN REL+ARI+AILRR + Sbjct: 67 VCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRRMEHT 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 E + L+ +E F + L+G ++ LL L H G V++RE + Sbjct: 127 EVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGAVLTRELI 186 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 ++ G+ P DR ID+H+S LR++L + KT+RG+GY++ ++ Sbjct: 187 AENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTAS 236 >UniRef50_B1KFK3 Two component transcriptional regulator, winged helix family n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KFK3_SHEWM Length = 232 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 97/228 (42%), Positives = 142/228 (62%), Gaps = 5/228 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGID 61 KIL+++DD+ L + L ELL +G+ V + DGE L + L+LLDVM+P ++G Sbjct: 9 KILVIEDDKLLNAQLAELLRAKGYLVNQSFDGEDGLLQASSKLYQLILLDVMLPGRDGFS 68 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 LK LR++ QTPVIM+TA+G+E +R+ G GADDY+ KPF+ EL+ RI A+LRRSH Sbjct: 69 LLKMLRKSCQTPVIMVTAKGAEEERIQGFSQGADDYVAKPFSSTELLLRIEALLRRSH-- 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 N+ S L +D+L +N Q Q LE T +F LL+ L H G+V+S+ +L Sbjct: 127 --TLKNELISHELILDSLQINYREQTVMVCEQVLEFTPIQFKLLWELLLHRGEVLSKAYL 184 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 Q+VL + + +DR++DMH+S +RRKL D +T G+GY +V Sbjct: 185 YQKVLNRNIGAYDRSLDMHLSRVRRKLNDADWQGERLQTCHGKGYCLV 232 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 101/230 (43%), Positives = 147/230 (63%), Gaps = 12/230 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M KILLV+DD + L+ LE EG+ V++A +G +AL+LL+ + DL+LLDVM+P+ +G Sbjct: 1 MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDG 60 Query: 60 IDTLKALRQTHQT---PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +D K +R +T P+IML+AR DRV+GLELGADDY+ KPF+ REL+ARI+A LR Sbjct: 61 LDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 E+++N+ +L L + P + G+ + LTG EF LL++ + QV Sbjct: 121 -----EERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVF 175 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 SRE+L Q+V G ++ R +D+HISNLR KL K P +++RG GY Sbjct: 176 SREYLLQKVWGYTVSGDTRTVDVHISNLRSKL---KSVSPIIESVRGVGY 222 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 169 bits (429), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 99/230 (43%), Positives = 140/230 (60%), Gaps = 4/230 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL----DDSIDLLLLDVMMPK 56 M I++V+D+REL +L++ L EG V V DG AL+ L DL++LD+M+P Sbjct: 1 MADIVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPN 60 Query: 57 KNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +G++ + +RQ+ TP++MLTAR +ELDRVLGLELGADDYL KPF+ REL AR+ AILR Sbjct: 61 VDGLEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 R ++G+ ++ L ++P +E + GQ + LT EF LL+LLA + G+V Sbjct: 121 RVEMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVF 180 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 SR++L V G+ DR +D HI LR+KL TL G GY Sbjct: 181 SRDYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGY 230 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 169 bits (428), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 99/237 (41%), Positives = 139/237 (58%), Gaps = 13/237 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 +IL V+D+ + L+ LE EG+NV A+ G QAL L + + D ++LDV +P +NG Sbjct: 5 KQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQNGF 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + K LRQ +QTP++ LTAR E+DRV+GLE+GADDY KPF+ RE+VARI+AI RR Sbjct: 65 EVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRR--- 121 Query: 121 SEQQQNNDNGSPT-------LEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLG 173 E Q N + P+ L+ NP + + GQ L+LT E+ LL+LL QH Sbjct: 122 MEIQAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPE 181 Query: 174 QVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPD-RKDGHPWFKTLRGRGYLMV 229 +V SR+ L + +R +D HI +LR+KL D P +T RG GY +V Sbjct: 182 KVFSRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDP-IRTHRGFGYSLV 237 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 169 bits (427), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 139/231 (60%), Gaps = 15/231 (6%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 M ++LV+D+ EL L+++ LE GF V + HDG++A + L +L++LD+M+P+ +G Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR-S 118 + + +R+ P+IM+TAR E+DRVLGL +GADDY+ KPF+ +ELVAR++A+LRR Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLD 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +E +QN D ++ +Q + ++L LT TEF LL L +HLGQV SR Sbjct: 121 RKAEPEQN----------DLFRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSR 170 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDG---HPWFKTLRGRGY 226 L + DR ID HI NLRRK+ + D H W + + G GY Sbjct: 171 AQLLDHINPDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGY 221 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 148/226 (65%), Gaps = 9/226 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 KIL+VDD++++ +LK LE F++ +A DG++AL +++ + DL++LD+M+P+ +G + Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEE 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +RQ QTP++MLTA+G+E D+V G GADDYL KPF+ REL+ARI+AILRRS+ Sbjct: 64 VCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSN-- 121 Query: 122 EQQQNNDNGSPTLEVDA-LVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 Q + + D L ++P R + +G+ +LT TEF +L L ++ GQV +RE Sbjct: 122 ---QKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQ 178 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L+++V+G +DR ID HI N+R+KL K+ T+ G GY Sbjct: 179 LAKKVMGLEYKGYDRTIDAHIKNIRKKLNLEKN--QLIITVYGVGY 222 >UniRef50_C0N4R8 Response regulator receiver domain protein n=3 Tax=Gammaproteobacteria RepID=C0N4R8_9GAMM Length = 234 Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 95/228 (41%), Positives = 141/228 (61%), Gaps = 4/228 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGID 61 +IL+++DD+ L L+ LL+ GF V ++DG+ L + D DL+LLDV +P +G + Sbjct: 10 RILIIEDDKILNKQLRVLLDGAGFEVTQSYDGDAGLLTAVSDQFDLILLDVALPGIDGYN 69 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 LK LRQ+ +TPVIMLTA G+E +R++GL GADDYL KPFN EL+ RI AILRRS Sbjct: 70 VLKVLRQSRETPVIMLTAHGAEEERIIGLRNGADDYLSKPFNLTELLLRIEAILRRSL-- 127 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 +Q + + L L+ QE FDG+ + T +F LL++L QH Q +S+ L Sbjct: 128 -RQTKPEVSVSHMNRSGLQLDKTTQEVYFDGKKITFTPLQFKLLWILMQHPSQTLSKPQL 186 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + VL + + +DR++DMH+S +RRKL +T+ G GY+++ Sbjct: 187 YRLVLERDFSRYDRSLDMHMSRVRRKLVAAGMPADRLQTVHGTGYILL 234 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 96/229 (41%), Positives = 137/229 (59%), Gaps = 5/229 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 M IL+VDD+ L L+ LE EGF V A DG +AL DL++LD+M+P +G Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +R TP+IMLTA+ ++D++LGLELGADDY+ KPFN REL+ARIRA+LRR+ Sbjct: 61 LTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + +Q L V LVL+P ++ A G+ LELT E+ LL LLA+H G V +R+ Sbjct: 121 AASRQDRAGR----LVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQ 176 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L V G +R +D+H+ +R KL + + +T G GY + Sbjct: 177 ELLDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYL 225 >UniRef50_B5ESV4 Transcriptional regulatory protein CpxR n=22 Tax=Gammaproteobacteria RepID=B5ESV4_VIBFM Length = 221 Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 101/232 (43%), Positives = 135/232 (58%), Gaps = 15/232 (6%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M++IL+VDDD EL +LL+E+L+ EG++V H GE AL+ + SIDL+LLDVM+PK +G Sbjct: 1 MSRILVVDDDIELCNLLQEVLQDEGYDVDCVHCGESALEFIQTHSIDLVLLDVMLPKLDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + Q TP++MLTA G E + GL+ GAD ++ KPFN EL+ARI AILRR Sbjct: 61 YQVARRICQRFATPILMLTALGDEASMLDGLQAGADHFIAKPFNVPELLARITAILRRVG 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q+Q+ + L L L LT TE LL L ++ VVS+ Sbjct: 121 LERQRQSYVGATEDLAEQFL--------------RLPLTETESELLQYLIKNTDVVVSKA 166 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L +L K L PFDR +DMHISN+RRKL KT+RGRGY + Sbjct: 167 DLQTNILKKELCPFDRNLDMHISNIRRKLLQSGLSKQHIKTVRGRGYSFIKV 218 >UniRef50_Q2S740 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S740_HAHCH Length = 242 Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 139/234 (59%), Gaps = 10/234 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 ++LLVDDD+ LT L+K+ LE G+ V V HDGE A+ L+ + L++LDVM+P +G+ Sbjct: 4 RLLLVDDDKGLTRLIKQFLEQNGYPVKVIHDGESAVSWLERNQPQLIILDVMLPGMDGLS 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ ++ P+IMLT+ ++D V GLE+GADDYL KP R L+A IRA LRR Sbjct: 64 VCREVRKHYKGPIIMLTSLDDDIDEVAGLEVGADDYLAKPVKSRVLLAHIRAQLRR---V 120 Query: 122 EQQQNNDNGSPT------LEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQV 175 E ND+ +P + + LV+N + G ++ T EF LLY LA+ G V Sbjct: 121 ETYSANDSDAPATQENGVIRIGELVINSNARTVVKAGVAIDFTTAEFNLLYYLARQAGSV 180 Query: 176 VSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 +SR+ + +E+ DR+ID+ +S +R++L D KT+RG GYL V Sbjct: 181 ISRDLVYREIFNLEYDGLDRSIDLRVSRIRKRLGDDPKQPRLIKTIRGEGYLFV 234 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 167 bits (422), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 95/228 (41%), Positives = 147/228 (64%), Gaps = 12/228 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS--IDLLLLDVMMPKKN 58 M+K+L+++D+ + +LK LE G+ V+ A +G++ LDL +++ I ++LLD+M+P + Sbjct: 2 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G LK +R+T + PV+M+TARG E D++LG ELGADDY+ KPF+ RE+VAR++AIL R+ Sbjct: 62 GWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + S+ D+G E +V++ +E + DG+ +ELT EF LL LL + G+VVSR Sbjct: 122 YGSQ-----DDGKT--EYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSR 174 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 E EV G R +D HI LR KL ++++ KT+ G GY Sbjct: 175 EKCLNEVWGYDFYGDLRTVDTHIKQLREKLGEKRN---LIKTVWGIGY 219 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 97/230 (42%), Positives = 138/230 (60%), Gaps = 9/230 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 N IL+V+DD L +L++ LE EG+ V +A DG AL+L + + L++LD+M+P+ +G+ Sbjct: 3 NPILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGL 62 Query: 61 DTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + LR + TP+IMLTARG + D+V GL LGADDYL KPFN EL+ARI A+LRR+H Sbjct: 63 EVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTH 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S+ Q+ G ++ L + RQ+ L+L+ EF +L L + GQ V RE Sbjct: 123 QSKPSQHVSVGDLEIDFQRLSVCKNRQK-------LDLSSREFQVLECLFRSAGQTVDRE 175 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + QEV G +R ID HI+ LR KL D + T+ G GY V Sbjct: 176 KIYQEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFV 225 >UniRef50_Q7ULL1 Two-component system response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7ULL1_RHOBA Length = 239 Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 137/232 (59%), Gaps = 7/232 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M +IL+ +DDR + L+ELL EG++V DG A +++ DL+ LDVMMP K+G Sbjct: 1 MPRILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKKFDLVCLDVMMPMKSG 60 Query: 60 IDTLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 D + LR + H+TPVI +TA+G E+D+V+GLELGADDY+ KPF E++AR++A+LRR Sbjct: 61 FDVCRLLRAEDHRTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVLRRC 120 Query: 119 HWSEQQ---QNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQV 175 + Q + T +D L + P + A+ T+ELT E +L LL G V Sbjct: 121 QPAPSQTPIAKDPTTHITFNMDDLQITPSKLRATRGETTIELTARELQILILLHDADGDV 180 Query: 176 VSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHP-WFKTLRGRGY 226 V R+ L QE G P R +D +S LR+++ +R HP +T+ G GY Sbjct: 181 VHRQTLFQECWGHNRVPNSRTVDQTVSQLRKRI-ERDPKHPRIIQTVYGLGY 231 >UniRef50_A6TSQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A6TSQ9_ALKMQ Length = 236 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/232 (38%), Positives = 143/232 (61%), Gaps = 5/232 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 K+L+VDD++ + L++ L GF +I ++G A+++ L + DL+LLD+M+P +G+ Sbjct: 4 TKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDIDGL 63 Query: 61 DTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + + +R + HQTP+IMLTA+ E D+V+GL LGADDY+ KPF REL AR+R +LRR Sbjct: 64 EVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLRR 123 Query: 118 SHWSEQQQ-NNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 S+ + ++V + ++ R + +E T +EF +L LA+ L V+ Sbjct: 124 VMDSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESLEHVL 183 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 SR L +EV G++ TP R +D+HI N+R+KL D D + +T+RG GY M Sbjct: 184 SRSLLLEEVTGEKSTPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYKM 235 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 139/224 (62%), Gaps = 2/224 (0%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDT 62 IL+ DD+ E+ L++ LE EG++V+ A DGE+A+ +++ IDL++LD+MMPK +G + Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGYEV 65 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R H P+I L+A+ S+ D+V GL LGADDY+ KPF ELVAR+ A LRR Sbjct: 66 TRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLTLN 125 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 Q + ++ S LEV +V++P R+ G+ +ELT EF +LYLLA H +V + E++ Sbjct: 126 QPKVAESKS-ALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENIF 184 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 Q+V + +HI LR+KL + K + KT+ G GY Sbjct: 185 QQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGY 228 >UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV27_9GAMM Length = 238 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/229 (42%), Positives = 142/229 (62%), Gaps = 3/229 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD--LLDDSIDLLLLDVMMPKKNGID 61 IL+VDDD L SL++ L GF V DG Q LD L +DL++LD+ +P ++G+ Sbjct: 9 ILVVDDDLRLRSLVEAHLRQVGFTVDGVRDG-QGLDHKLHGGEVDLIILDLGLPDEDGLQ 67 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR T+ TP+++LTARG E+DR+LGLE+GADDYL KPF+ REL+AR++AILRR+ Sbjct: 68 ICQRLRLTYDTPILILTARGDEVDRILGLEMGADDYLSKPFHPRELIARVQAILRRTKPM 127 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + + + A V++ RQ+ + G+ LEL+ +F L L +H GQ +SRE L Sbjct: 128 NRGRQHADEPEICMKGAFVVDTRRQKILWRGEPLELSQADFQTLSTLIKHEGQPLSRERL 187 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 G+ DR+IDM IS LR+ L + DG +T+ G GY+ +S Sbjct: 188 MLLSRGRTYASDDRSIDMQISRLRKLLDSKTDGAQHIRTVWGSGYMFLS 236 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/233 (41%), Positives = 141/233 (60%), Gaps = 12/233 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNG 59 +ILL++DD +L L+ + L M + V A G++ LD+LD +IDL++LD+M+P +G Sbjct: 4 QILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDG 63 Query: 60 IDTLKALR-----QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAI 114 + + +R QT++ P++MLTA+G DRVLGLE+GADDY+ KPF REL+ARIRA+ Sbjct: 64 MQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIRAV 123 Query: 115 LRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 LRR EQ D+ S +L L + P E + D + + LT +F LL+ A H G+ Sbjct: 124 LRR---HEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGK 180 Query: 175 VVSREHLSQEVLGKRLTP-FDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 V++RE L Q + + DRAID+HIS LR + D T+RG GY Sbjct: 181 VLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGY 233 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 6/225 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 +ILLV+D++ + + LE E + V DG+ AL+ DL++LD+M+P+ G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +A+R P+IMLTA+G DR++GLELGADDYL KPF+ RELVAR+RA+LRR H Sbjct: 70 VCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHAD 129 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + Q LE L ++ + G+ ++LT +EF LL L+++ G+V SR L Sbjct: 130 SEPQRE-----VLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMEL 184 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 ++VLG ++R ID H+ NLR K+ D W T+ G GY Sbjct: 185 VEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGY 229 >UniRef50_B8JG70 Two component transcriptional regulator, winged helix family n=2 Tax=Cystobacterineae RepID=B8JG70_ANAD2 Length = 238 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 100/232 (43%), Positives = 135/232 (58%), Gaps = 10/232 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGID 61 ++L V+DD L +L LE G V DG+ L + L D+++LD+M+P+K+G++ Sbjct: 10 RVLFVEDDERLAALTTRYLESHGHAVTWVADGQLGLAEALKGQHDVVILDLMLPRKSGLE 69 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR P+IMLTA G E DRVLGLE GADDYL KPF+ REL+AR+RA++RR S Sbjct: 70 VCRELRARLPVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRRGRGS 129 Query: 122 EQQQNNDNGSP--TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 G P + V L L+P AS G+ L LT EF LL +LA+ G+V++RE Sbjct: 130 -------LGPPREVIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLTRE 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L G FDR+ID HIS LR KL D KT+RG GY++ + Sbjct: 183 QLLDLTKGSADEAFDRSIDAHISRLRHKLGDDPRRPALLKTVRGAGYVLAAG 234 >UniRef50_C4ZB82 Putative uncharacterized protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZB82_EUBR3 Length = 231 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 147/228 (64%), Gaps = 3/228 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 M+KIL+V+DD+ + S +K+LLE++ ++V++A +G +AL+ +D+S L+++D+MMP+ +GI Sbjct: 1 MDKILVVEDDKTVYSGIKKLLELQHYSVVIAQNGMEALEKIDESFSLVIMDIMMPQLDGI 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS-H 119 +T + +R+ H P++ L+A+ ELD++ GLE+G DDY+ KPF++ EL+++++A++RR Sbjct: 61 ETCRRMRERHSVPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALIRRYLV 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + N N T+E D L L R + F+ ++LTG E+ +L LL ++ ++ + E Sbjct: 121 YDSGSANRTNKDETIETDGLKLFTNRNKVEFNDNEIKLTGKEYEILKLLMKNPDRIYTIE 180 Query: 180 HLSQEVLGKRLTPFDR-AIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + + V + T + + +HI NLR KL + G T GRGY Sbjct: 181 MIYEMVWDEAFTYNAKNTVMVHIKNLRNKLI-KACGDACIHTEWGRGY 227 >UniRef50_A6BB82 Transcriptional regulator CpxR n=2 Tax=Vibrio parahaemolyticus AQ3810 RepID=A6BB82_VIBPA Length = 178 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 85/138 (61%), Positives = 104/138 (75%), Gaps = 3/138 (2%) Query: 92 LGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFD 151 LGADDYLPKPF+DREL+ARIRAILRR+ S Q+N N S +E L L PG+QEA D Sbjct: 41 LGADDYLPKPFSDRELLARIRAILRRT--SHTQKNGKN-SDCIEYQELRLYPGKQEAYCD 97 Query: 152 GQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDR 211 Q L+LT TEF LL Q+ G V+++E LS +VLGKRL FDRAIDMH+SNLR+KLPD+ Sbjct: 98 QQLLDLTATEFALLTHFVQNPGHVLTKETLSLDVLGKRLAAFDRAIDMHVSNLRKKLPDQ 157 Query: 212 KDGHPWFKTLRGRGYLMV 229 +G P KTLRGRGY+++ Sbjct: 158 SNGKPRIKTLRGRGYMLL 175 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 91/226 (40%), Positives = 141/226 (62%), Gaps = 10/226 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 K+L++DD++ L L++ E EGF+V VA+DGE+AL + + S D ++LD+M+PK +GI Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +RQ +IMLTA+ ++D++LGLELGADDY+ KPFN REL+AR+R ++RR Sbjct: 78 LCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEKG 137 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 E +++ + L+++ G + + + + LT EF +L LL ++ G+V RE + Sbjct: 138 EVKKDE------YQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEI 191 Query: 182 SQEVLGKRLTPFD-RAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 Q V G+ +D R ID+H+ NLR KL D K P +T G GY Sbjct: 192 FQLVWGE--PCYDTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGY 235 >UniRef50_A9D5A2 Osmolarity response regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D5A2_9RHIZ Length = 235 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 97/232 (41%), Positives = 139/232 (59%), Gaps = 8/232 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD--LLDDSIDLLLLDVMMPKKNG 59 +++++VDDD EL +LL+ L GF A DG ALD L D ++LD+MM ++G Sbjct: 6 DRVIVVDDDPELRTLLRRFLSEHGFET-RAVDGGTALDRELSRSPADAIVLDLMMSGEDG 64 Query: 60 IDTLKALRQT-HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + + LR QTP+IMLTARG +DR++GLE GADDYL KPF RELVAR+ A+LRR+ Sbjct: 65 LAICRRLRAAGDQTPIIMLTARGDPIDRIVGLETGADDYLAKPFEPRELVARLSAVLRRT 124 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +D T+ + L +N + + DG +L+L+ EF LL + + G+ +SR Sbjct: 125 RGMRDVPTDD----TVTIGPLEINFSTRMVTRDGASLKLSSREFALLAAMVRSRGRPLSR 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L + LG+ DRA+D+ I+ LRR L DR D KT+ G GY++VS Sbjct: 181 AQLIERALGRDAEVTDRAVDVQIARLRRALGDRADDAGLIKTVWGVGYVLVS 232 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 101/230 (43%), Positives = 136/230 (59%), Gaps = 3/230 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M IL+VDDDRE+ LL LE + F V D +A L+ L++LD+M+P ++G Sbjct: 27 MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESG 86 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ID + LR Q P+IMLTA G E DR++GLELGADDY+ KPFN RELVARIRA+LRR Sbjct: 87 IDFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRVG 146 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQE-ASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +E ++ + VL R+ G + LTG E+ LL L +V++R Sbjct: 147 ENE-TPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTR 205 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + L + G++ PFDRAID+ IS LRRKL D KT+RG GY++ Sbjct: 206 DMLLDLLRGRQAGPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVL 255 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 136/227 (59%), Gaps = 8/227 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 + K+L+VDDD+ + L+K E EGF V+ DG+ L D ++ D+++LD+M+P ++G Sbjct: 4 LGKVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + LR P+IMLTA+G E DRVLGLE+GADDY+ KPF+ RELVARI+A+LRRS Sbjct: 64 LSLCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQ 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ N P LE+ A + ++ D E+T EF LLY LAQ+ +V +RE Sbjct: 124 AADPATNWQLKYPGLEIRADI-----RKVLVDAAESEVTPREFDLLYHLAQNPQRVFTRE 178 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L V G R +D+HI LR KL H + +T+ G GY Sbjct: 179 ELLGAVWGYDYFGDQRTVDVHIRRLRTKLASLP--HEYLQTVWGVGY 223 >UniRef50_D1U371 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U371_9DELT Length = 239 Score = 162 bits (411), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 134/227 (59%), Gaps = 12/227 (5%) Query: 12 ELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDTLKALRQTH 70 +L +LL E LE GF V G+ A++ + D+ L++LDVMMP +NG+D L+ +R Sbjct: 15 KLCALLTEYLEGYGFKVRTLPSGDGAVEAVGRDTPSLVILDVMMPGRNGLDVLRDIRAGS 74 Query: 71 QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNG 130 + PVIMLTA+G + DR++GLELGADDY+PKPFN REL+ARI+A+LRR+ + G Sbjct: 75 KVPVIMLTAKGEDTDRIVGLELGADDYMPKPFNPRELLARIKAVLRRA----ETVGTSGG 130 Query: 131 SPT-------LEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQ 183 +P+ +E L LN R D LEL+ TEF LL L ++ ++R+ L Sbjct: 131 APSAAQRAVLVEAGGLALNVSRHVLLVDEDELELSATEFRLLRALMENPDTALTRDELMS 190 Query: 184 EVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 G+ + +DR+ID+H+S LR L +T+ G GY+ V Sbjct: 191 LAWGRDFSAYDRSIDVHVSKLRSLLRPYAGHDKRIRTVWGTGYMFVG 237 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 136/230 (59%), Gaps = 9/230 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 +IL+ DD+ E+ +L+ LL EG+ VI A DG + L L D SIDL++LD+MMP NG T Sbjct: 4 RILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDSSIDLIVLDIMMPNMNGYQT 63 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS--HW 120 LR+T P++ LTA+G + D+ LG GADDYL KPF+ EL AR++A+LRR + Sbjct: 64 CLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQVYK 123 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++++ + L +D L L +Q A +G+ +ELT EF +L L ++ Q+ S E Sbjct: 124 GKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIFSAEQ 183 Query: 181 LSQEVLGKRLTPF----DRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L ++ + P+ + I +HI NLR+K+ + KT+ G+GY Sbjct: 184 LYEKAWNE---PYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGY 230 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 138/227 (60%), Gaps = 4/227 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDT 62 ILLV+DDRE++ L+ L V VA D + LL DS +DL++LD+M+P ++G+ Sbjct: 20 ILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGEDGLSI 79 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + LR P++MLTA+ E+DR++GLELGADDYL KPFN REL+ARIRA+LRR S Sbjct: 80 CRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRRG--SG 137 Query: 123 QQQNNDNGSPTLEVDALVLNPG-RQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 +++G L VL+ G RQ + DG + LT EF LL+ + G+V+SR+ L Sbjct: 138 GSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLSRDQL 197 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 G+ PF+R+ID+ +S +R+K+ KT+R GY+ Sbjct: 198 LDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVF 244 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 136/225 (60%), Gaps = 6/225 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGID 61 KIL+VDD+ ++ +++K L EG+ VI A +G +AL+ + DL++LD MMP+ +GI+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ +R+ Q P+IMLTA+ E+D+++G E G DDY+ KPF+ REL ARI+ IL+R Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR---- 119 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + N L L L P ++E G+ L+LT TEF LL ++ G+ SR L Sbjct: 120 -LEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLEL 178 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + +G+ ++R ID HISNLR+K+ + +T+ G GY Sbjct: 179 LEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGY 223 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 162 bits (410), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 138/233 (59%), Gaps = 2/233 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M KIL+V+D+ ++ L+ + L+ EGF V++AHDG+ A+D +D + +L +LD+M+P +G Sbjct: 1 MRKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + L+ +R+ PVIMLTA+ +++D+V+ LGADDY+ KPF+ EL AR++A+LRR+ Sbjct: 61 SEVLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTE 120 Query: 120 WSEQQQNNDNGSPT-LEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + N G T L +L +N E G + L EFTLL LA+ +VV+ Sbjct: 121 GTHHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTI 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + + V GK D + +HIS LR K+ + +T+RG GY +V Sbjct: 181 AQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLVCG 233 >UniRef50_C6BZU5 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZU5_DESAD Length = 232 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/234 (40%), Positives = 139/234 (59%), Gaps = 10/234 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNV---IVAHDGEQALDLLDDSIDLLLLDVMMPKK 57 MNKILL+DDD E+ LL L+ EG+++ A +G +A D DL+LLD+++P Sbjct: 1 MNKILLIDDDPEMGELLSTYLDGEGYSLHHKCTAKEGLKAFG--SDEYDLILLDIVLPDI 58 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 +G++ L+ +R PVIMLT +G E+DRV+GLE+GADDY+ KPF REL+AR+RA LRR Sbjct: 59 SGLNVLEKIRLDSTVPVIMLTGKGDEVDRVVGLEMGADDYICKPFPLRELLARMRASLRR 118 Query: 118 SHWSEQQQN-NDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 + Q + + L+V L +N G T EF+++ LA G+++ Sbjct: 119 CSMTPQSHSITPSSRGKLKVGELDINLDSHAIMVKGIETHFTAAEFSIVEHLAASCGKLI 178 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 R+ L + LG+ D +++H+SNLRRK+ D KT+RGRGY+M S Sbjct: 179 ERDELMEIALGRSADFDDYVLNVHMSNLRRKIGDSVS----IKTIRGRGYMMTS 228 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 136/226 (60%), Gaps = 4/226 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+VDD+ E+ L++ L+ E F V +D E+A + ++ + +DL LLD+MMPK +G++ Sbjct: 72 KILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISGLE 131 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R+ + P+IMLTA+G+E+D++ GL LGADDY+ KPF E+VAR++A LRR + Sbjct: 132 LCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRR--YK 189 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 LE L+LN E + + L LT TEF++L +L + G VVS E L Sbjct: 190 RYNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAEEL 249 Query: 182 SQEVLG-KRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 ++ + + + I +HI +LR K+ D + + KT+ G GY Sbjct: 250 FHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGY 295 >UniRef50_Q2BGC6 DNA-binding response regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BGC6_9GAMM Length = 241 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 143/230 (62%), Gaps = 13/230 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGID 61 +ILL++DDRE+++ + E+L +G++ + +++G + L ++ L+LLD M+P+ +G++ Sbjct: 18 RILLIEDDREVSNSIAEILSKKGYHTVQSYNGREGLVTAINQQFHLILLDKMLPELDGLE 77 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L LR+ TPV+ML+A G+E DR+ G GADDYLPKPFN EL+ RI A+LRRS S Sbjct: 78 LLHRLRKYRDTPVVMLSACGAEQDRIDGFSSGADDYLPKPFNMTELLFRIEALLRRSMSS 137 Query: 122 EQQQNN----DNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + + +G+ L+ L AS DG +ELT E+ LL H +V+S Sbjct: 138 AKSETCMGQIKDGTICLDTKNKCL------ASSDGD-IELTPIEYELLKTFLTHKDEVLS 190 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 + +L Q +L K + +DR++DMHISNLR K+ + H KT+RG+GY Sbjct: 191 KPYLYQLILSKPFSRYDRSLDMHISNLRSKMAPLVETHK-IKTIRGQGYC 239 >UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromonadales RepID=Q47ZA2_COLP3 Length = 238 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/230 (39%), Positives = 138/230 (60%), Gaps = 5/230 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 + KILLV+DDR+L+ L+ + L EGF+V G+ + S DL++LDVM+P K+G Sbjct: 8 VKKILLVEDDRQLSDLVTDFLTSEGFHVKQEFRGDTVAKRVKLFSPDLIILDVMLPGKDG 67 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LR PV+MLTA+ ++ D+VLGLE+GADDY+ KP R L+AR+ A+LRR Sbjct: 68 FGVCRDLRPEFNGPVLMLTAKSTDFDQVLGLEIGADDYVIKPVEPRVLLARVNALLRRGD 127 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q + + L +N ++ + + ++LT EF LL+LLA G+V +R+ Sbjct: 128 LPNQSEEKGE----ITCGGLYINKASRKVTLQDENVDLTSQEFDLLWLLAGKAGEVQNRD 183 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 ++ + V+G+ DR++D+ IS LR+KL D D KT+ G+GYL V Sbjct: 184 YIYKAVIGREYDGLDRSVDVRISRLRKKLHDSTDTPFRIKTIWGQGYLFV 233 >UniRef50_Q0JZE8 Response regulator, OmpR-family n=2 Tax=Cupriavidus RepID=Q0JZE8_RALEH Length = 240 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 104/233 (44%), Positives = 137/233 (58%), Gaps = 4/233 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 + ++LL+DDD EL +L+E LE + V +AH +Q LL + D+ LLD+M+P NG Sbjct: 9 LARVLLIDDDLELAQMLREYLEPDHCTVTLAHTRQQGETLLARNDYDVALLDLMLPDGNG 68 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +D L+ R Q PVIM TA G E DRVLGLELGADDYL KPF+ REL AR+ A+LRR H Sbjct: 69 LDLLRLHRARSQRPVIMFTAHGDEADRVLGLELGADDYLSKPFSPRELKARMHAVLRRFH 128 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 +P LE AL LN A LTG E +L +L + G+VV+R Sbjct: 129 --RAAPAAPAQAPWLEAGALRLNLASGLAIHGNAEAPLTGAEQRVLEILMRAPGRVVARA 186 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWF-KTLRGRGYLMVSA 231 + + LG+ +DR++D HIS LRRKL P + LRG+GYL+V A Sbjct: 187 EIGRFALGRAPERYDRSLDTHISALRRKLALDGITSPLLIRNLRGQGYLLVQA 239 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 135/235 (57%), Gaps = 15/235 (6%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL--DDSIDLLLLDVMMPKKNG 59 ++IL++DDD+ L +LL++ E V A G + + D+++LD+M+P +G Sbjct: 3 HRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDIDG 62 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +TLK +R Q PVIMLTAR + DR++GLELGADDY+ KPFN REL+ARI+A+LRR+ Sbjct: 63 FETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRAT 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLE-------LTGTEFTLLYLLAQHL 172 S + +P A + G E F G+ L +TG E +L L H Sbjct: 123 ASAE------AAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHK 176 Query: 173 GQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 G ++R+ L G+ FDR+ID+HIS +R+KL D + KT+ G+GY+ Sbjct: 177 GTPLTRDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYM 231 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 140/225 (62%), Gaps = 9/225 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 IL++DD+ +L LL+ L+ EGFNV A +G + L + D DL+LLD+MMP+ G+D Sbjct: 5 ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLDF 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 ++A + +TP+I+LTA+ + D+++GLELGADDY+ KPFN RE++AR+RA+LRRS+ ++ Sbjct: 65 MRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYKAQ 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 Q + L + +VL QT++LT +EF +L L G V SR L Sbjct: 125 PQAD------VLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLL 178 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKL-PDRKDGHPWFKTLRGRGY 226 G+ ++R ID+HI NLR K+ PD K+ + +T+ G GY Sbjct: 179 DRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPR-YIETVYGVGY 222 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 132/233 (56%), Gaps = 10/233 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 I++ DD+R +T + + LE EG V VA +GE+A+ L + DLL+LD+MMPK +G++ Sbjct: 5 IIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGLEV 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 +RQT TP+IMLTARG E DR+LGL +GADDY+ KPF+ RELV R+ ILRR+ W Sbjct: 65 CDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGWRS 124 Query: 123 QQQNNDNGSPTLEVDA---------LVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLG 173 + + + L +A L + P + S +ELT EF LL+LLA + G Sbjct: 125 EASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMYPG 184 Query: 174 QVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 +V SR L +V + +H+ LR K+ W KT+ G GY Sbjct: 185 KVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGY 237 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 137/234 (58%), Gaps = 13/234 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVA---HDGEQALDLLDDSIDLLLLDVMMPKKN 58 ++L++DDD LT+LL E L GF V A DG +AL D DL++LDVM+P + Sbjct: 16 TRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKA--DPPDLVILDVMLPDTD 73 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G+ + +R + P+IMLTARG DR++GLE+GADDYLPKPF RELVARI+A+LRR Sbjct: 74 GLAVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRG 133 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + + L + AL +N + + LELT EF LL LA++ G+V+SR Sbjct: 134 TRDDAE--------ALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSR 185 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + + G +DR+ID+ +S LR+KL D + +T+RG GY + Sbjct: 186 DRILDGTRGIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIGGG 239 >UniRef50_Q1IHT8 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IHT8_ACIBL Length = 247 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 134/230 (58%), Gaps = 9/230 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGID 61 +LL+DDD EL ++ E L G +V +G L + DL++LDVM+P NG Sbjct: 21 SLLLIDDDAELCEMMSEFLVQHGHSVDCIRNGPDGLKSAAETKYDLVILDVMLPGMNGFT 80 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L LR+ PVIMLTAR + DR+ GLE GADDYLPKPF+ EL+AR+RA+LRR+ + Sbjct: 81 LLSQLRRRTPVPVIMLTARTAPHDRIQGLEAGADDYLPKPFDPDELLARVRAVLRRASQA 140 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 D D + +N ++ ++LT EF +LYLL G+V++RE + Sbjct: 141 PADALFD-----FTFDDVRINARTRQVWLKADLIDLTAVEFDILYLLVCSAGRVLTREEI 195 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 S +L +RL DR++D+HIS++R KL + P+ +T+RG GY+ + Sbjct: 196 SLAILERRLMSHDRSLDVHISHIRSKL---ETLAPFIQTVRGVGYVFTGS 242 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 140/229 (61%), Gaps = 6/229 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 KIL+VDDD + L+ L EG++V+ A+D E+AL ++ ++S+D+ ++D+M+P +G Sbjct: 28 KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGF 87 Query: 61 DTLKALRQTHQ---TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + ++ LR + TPV+ L+A+G E D+VLGLELGADDY+ KPF+ RE++ARI+A+ RR Sbjct: 88 ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 S Q++ + + L ++ R E Q + LT EF LL LA++ G+V S Sbjct: 148 IQLSAQER--EERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFS 205 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 R+ L ++ G R +D+HI LR K+ + + T+RG+GY Sbjct: 206 RDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGY 254 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 14/227 (6%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M +IL+VDD+ ++ ++L+ L EG+ V A DGE+ L L + DL++LDVM+PKK+G Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 L+ +++ +TPVIMLTAR D V G E+GADDY+ KPFN++ L+AR++++LR++ Sbjct: 66 WSILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKT- 124 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 N+ +E+ LV+N S +EL E+ LL L ++ +SRE Sbjct: 125 -------NNMVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSRE 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L EV G DR ID HI NLR+K+ G KT+RG GY Sbjct: 178 KLLNEVWGYDFLGDDRTIDTHIKNLRKKI-----GKNAIKTIRGIGY 219 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 160 bits (404), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 143/238 (60%), Gaps = 21/238 (8%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 ++L+++D++ + ++K L+ E + IV H+G++A+ + S D ++LD+M+P +G + Sbjct: 7 RVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEE 66 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R Q P++MLTA+ E DR+ GL++GADDY+ KPF+ +ELVAR+RAI+RR+ Sbjct: 67 ICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRT--- 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASF-DGQT------LELTGTEFTLLYLLAQHLGQ 174 N+ G L+ + LN G + D +T +ELT TEF LL + Q+ G+ Sbjct: 124 -----NNEG---LKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGK 175 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 V SR+ L +VLG +DR ID+HI NLR K+ + + + T+ G GY V S Sbjct: 176 VFSRDELVVKVLGYDYVGYDRTIDVHIKNLRHKIE--CEYYKYIVTVYGVGYRFVKVS 231 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 142/236 (60%), Gaps = 13/236 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNG 59 + +IL+VDDD L +LL+ LE +GF V AHD Q LL + L++LD M+P ++G Sbjct: 20 VERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDG 79 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + + LRQ++ TP+IMLTARGS+ DR+ GLE GADDYLPKPFN EL+ARIRA+LRR Sbjct: 80 LSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR- 138 Query: 119 HWSEQQQNNDNGSPTLEVDAL-----VLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLG 173 Q G+P+ +V+ + L+ + + +GQ + LT EF +L L QH Sbjct: 139 -----QVREVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPR 193 Query: 174 QVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + ++R+ L G+ +R+ID+ +S LRR + D + +T+ G GY+ V Sbjct: 194 EPLTRDKLMNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFV 249 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 139/228 (60%), Gaps = 6/228 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 +KIL+VDD+ E+ L++ L+ E + V + ++AL+ +D S IDL +LD+M+P +G+ Sbjct: 3 DKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGL 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR-SH 119 + +R H P+IMLT + +E+D++ GL +GADDY+ KPF EL+AR++A LRR Sbjct: 63 TICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 +S ++ N+N + LV+N E + + L LT TEF++L +L ++ G VVS E Sbjct: 123 FSGVKEQNEN---VIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSE 179 Query: 180 HLSQEVLG-KRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L E+ G + + + I +HI +LR K+ D D + KT+ G GY Sbjct: 180 LLFHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGY 227 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 144/228 (63%), Gaps = 5/228 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGID 61 +IL+V+DD L L ++ L G +V + DG +A+ ++++ DL++LDVM+P +G+ Sbjct: 11 RILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDGLT 70 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R + +P++MLTAR ++D+VLGLE+GADDY+ KP R L+ARIRA+LRRS + Sbjct: 71 VCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSENA 130 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 ++ LE LV++ G + + +G+ ++ T E+ LL+LLA + G+++SRE + Sbjct: 131 PSEEIPQR----LEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDI 186 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + + G DR+ID+ IS +R K+ D + KT+R +GYL V Sbjct: 187 FERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFV 234 >UniRef50_C1SP47 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SP47_9BACT Length = 234 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 132/228 (57%), Gaps = 4/228 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGIDT 62 IL+VDDD +L +L L ++V V ++ L S +++LD+MMP NG D Sbjct: 5 ILIVDDDIKLCKMLSRYLRDYSYSVDVINNPLMLEKYLKSSKPSVIILDIMMPHINGFDL 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 K LR+ PVIML+ARG DR+ GLE GADDYL KPF REL+ARI A+++R SE Sbjct: 65 CKKLRKNSDIPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKRFEHSE 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 NN + + L ++ + +A+ DG LELT TEF +L L+ ++ ++SR+ L Sbjct: 125 DTANN---AAVYQYGELSIDTDKYKATMDGSNLELTKTEFIILSLMVRNPYILLSRDRLY 181 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 E+ G ++R +D+ +S LR KL D + KT+ G GY+ ++ Sbjct: 182 NELTGFDCDAYNRTVDISVSRLRTKLNDDPKSPKYIKTVWGEGYMFIA 229 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 144/235 (61%), Gaps = 15/235 (6%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+VDDD L +LL+ L +GF V + EQ LL +S L++LD+M+P ++G+ Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 TLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR Q++ P+IM+TA+G E+DR++GLE+GADDY+PKPFN REL+ARIRA+LRR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR--- 122 Query: 121 SEQQQNNDNGSPTLEVDALV-----LNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQV 175 Q N G+P+ E + LN G +E + + + LT EF +L L H + Sbjct: 123 ---QANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 Query: 176 VSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHP-WFKTLRGRGYLMV 229 +SR+ L G+ + +R+ID+ IS LRR + + HP + +T+ G GY+ V Sbjct: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMV-EEDPAHPRYIQTVWGLGYVFV 233 >UniRef50_Q1N0E1 DNA-binding response regulator n=1 Tax=Bermanella marisrubri RepID=Q1N0E1_9GAMM Length = 247 Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 89/234 (38%), Positives = 134/234 (57%), Gaps = 6/234 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 +IL+++DDR + LL L +G+ + A DG++ L + + D++LLDVM+PK +G+ Sbjct: 14 KRILIIEDDRSVNDLLCGNLSKKGYQIEAAFDGDRGLKKAIKEDFDIILLDVMLPKIDGL 73 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 L LR QTPV+MLTA+G E DR+ G + GADDYL KPF+ EL RI+AILRR+ Sbjct: 74 KLLTLLRSEKQTPVLMLTAKGGEEDRIYGFKSGADDYLIKPFSMTELDLRIKAILRRTQI 133 Query: 121 SEQQQNNDNGSPTLEVDA----LVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 + + + S E+ + + N + + + + T EF L Y L + +VV Sbjct: 134 QREFSSKEE-SKNFELKSIDKKIYFNKKKGVVHINNKEIAFTPIEFELFYALEKEKDEVV 192 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 S+ L Q VL + + +DR +DMHIS +R+KL KT+RG+GY S Sbjct: 193 SKAFLYQTVLLREFSRYDRTLDMHISKIRKKLTAAGMSKNTIKTIRGQGYYFES 246 >UniRef50_B4WSE4 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSE4_9SYNE Length = 243 Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 129/226 (57%), Gaps = 6/226 (2%) Query: 8 DDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL---DDSIDLLLLDVMMPKKNGIDTLK 64 DD+R T+L+K L E + VI A DG+ AL D IDL++LDVMMPK +G + Sbjct: 15 DDERTRTALVKSL-EAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLDGFQVCQ 73 Query: 65 ALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQ 124 LR T P+IM T GS DRV GLE+GA+DY+ KPF+ +EL+ARIR+ILRR+ ++ Sbjct: 74 RLRATSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSILRRAARRQEH 133 Query: 125 QNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQE 184 + +E+ V++ + A +G L LT EF L+ LLA G + SR + + Sbjct: 134 VSGVVHRSAIEIGQFVIDSSTRRAYIEGHNLRLTEIEFRLIELLASRPGHIFSRGDILEA 193 Query: 185 VLGKRLTPF--DRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + G + +D+HIS LR KL + + T+RGRGY+ Sbjct: 194 LWGYDANSAADTKTVDVHISRLRIKLNETTHNPKYIVTIRGRGYMF 239 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 138/235 (58%), Gaps = 12/235 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 KIL+VDD++ + ++K LE +GF+VI A DG+ ALD+ +++I L++LD+M+PK G + Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +R P+IMLTA+ E +++ G+ +GADDYL KPF+ RELV R+RA+LRR++ Sbjct: 66 VCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYRD 125 Query: 122 EQQQNN----DNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + +NG LEVD + +Q G + LT EF +L + + QV S Sbjct: 126 FSPMADILTFNNGD--LEVDIKKMVVKKQ-----GVVVNLTTNEFKILTVFLSNPTQVFS 178 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 RE L ++ G FDR +D +I N+R+K+ + T+ G GY + ++ Sbjct: 179 REKLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIPSN 233 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 137/224 (61%), Gaps = 10/224 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDT 62 +L+VDD+ ++ L+ LE F+ + A +GE+AL +L ++ +D++L+DVMMPK +G Sbjct: 6 VLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGFTL 65 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 +R+ P++ LTARG E D+V GL+LG DDY+ KPF+ EL+ARI AI+RR++ ++ Sbjct: 66 CARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHNK 125 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 Q+ + + P LV++ ++ + DG + LT EF LL LA+H GQV SRE L Sbjct: 126 QKNEDLSFGP------LVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLL 179 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 +V G T R +D HI LR KL D + +T+ G GY Sbjct: 180 AQVWGYDYTGNARTVDTHIKTLRMKLKQASD---FIQTVWGIGY 220 >UniRef50_A6G4N0 DNA-binding response regulator n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G4N0_9DELT Length = 223 Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 98/227 (43%), Positives = 132/227 (58%), Gaps = 13/227 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 + LL+DDD L LL L G + A DG L +L ++S D++LLD MMP +G++ Sbjct: 4 RALLIDDDARLFELLSGYLGQNGVELEHAVDGAAGLRVLANESHDVVLLDGMMPGMDGLE 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ LR PV+MLTARG E DRV+GLELGADDY+ KPF+ REL+AR+RA+LRR H Sbjct: 64 VLRRLRARSAIPVLMLTARGDEADRVVGLELGADDYIAKPFSSRELLARLRAVLRRMH-- 121 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + G L + +V G +E +G+ LTG EF LL L + G+VV+R L Sbjct: 122 -----PEVGRERLSANGVVALIGTREVRVEGEAASLTGLEFDLLVALLRRAGRVVTRAAL 176 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 E +R +D+HIS LR+KL G KT+RG GY+ Sbjct: 177 LHEAGRDDTVVSERTVDVHISKLRKKL-----GGDKIKTVRGVGYVF 218 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 135/228 (59%), Gaps = 3/228 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDG-EQALDLLDDSIDLLLLDVMMPKKNGID 61 IL+V+DDRE SL+ + L G +V A DG E + + D +DL+++D+M+P ++G+ Sbjct: 16 SILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGLS 75 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R Q P+IMLTARG ++DR++GLE+GADDY+ KPFN REL+ARI A+LRR S Sbjct: 76 LCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRR-QAS 134 Query: 122 EQQQNNDNGSPTLEVDALVLNPG-RQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + + G+ D ++ R+ + G + LT EF LL + G+V+SRE Sbjct: 135 ALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSREV 194 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + G FDR+ID+ +S +RRK+ KT+R GY+ Sbjct: 195 LLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMF 242 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/225 (37%), Positives = 136/225 (60%), Gaps = 4/225 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 KI +VDD+ ++T ++K LE G+ V VA++G A++L + + DL++LD+M+P G D Sbjct: 11 KIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGED 70 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR+ + P+IMLT + E D + GL++GADDY+ KPF+ R+LVAR++A+LRR + Sbjct: 71 ICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRR---T 127 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 E + N +L + L++N E G + LT E+ +L + ++ G++ +RE L Sbjct: 128 EDELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREEL 187 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 LG+ +DR ID HI NLR K+ D + T+RG GY Sbjct: 188 IIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGY 232 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/230 (43%), Positives = 142/230 (61%), Gaps = 7/230 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 I +VDD ++ L+ + L EG+ + V DG + LLD D DL++LDVMMP ++G+ Sbjct: 7 IAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDGLSL 66 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH-WS 121 + +R TPV+ L+AR +LD +LGLE+G DDYL KPFN REL+AR++A+LRR+ S Sbjct: 67 CRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRATPAS 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPG-RQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 E + GS + VLN R+ DG ++ L+GTEF LL L + G++V+R+ Sbjct: 127 EGASSLLEGS--IRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVTRDE 184 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKL-PDRKDGHPWFKTLRGRGYLMV 229 L +V G+ PFDR+ID IS LRRK+ PD K+ + +T G GY V Sbjct: 185 LLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKN-PIYIRTHWGGGYAFV 233 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/235 (40%), Positives = 139/235 (59%), Gaps = 15/235 (6%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS--IDLLLLDVMMPKKN 58 M ++L+V+DD + +++ L EG DGE AL+LL DS DL+LLDVM+P + Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 59 GIDTLKALRQTHQ----TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAI 114 GI + LR++H PV+MLTAR E V+GLE+GADDY+ KPF+ R+L +R+RA Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 115 LRRSHWSEQQQNNDNG--SPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHL 172 LRR + Q P LE+D L R+ + G+ +ELT EF +L LLA + Sbjct: 121 LRRQRMNAQASPEQRKLEFPGLEIDLL-----RRRVTARGEQVELTAREFEVLALLASNP 175 Query: 173 GQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKL-PDRKDGHPWFKTLRGRGY 226 G+V SRE + + G R+ D+HI +LR+K+ PD K+ + +T+RG GY Sbjct: 176 GRVYSREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPR-YIQTVRGMGY 229 >UniRef50_B0SB02 Sensor protein of a two-component response regulator n=7 Tax=Bacteria RepID=B0SB02_LEPBA Length = 225 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 135/226 (59%), Gaps = 7/226 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 M KILL++D+ + ++ LE EGF++ +A G Q L +L D I L+LLD+ +P ++G Sbjct: 1 MIKILLIEDEPGIQETIQIALEAEGFSLSIAPTGIQGLQMLADDISLILLDIGLPDQSGF 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LK++R+ PVI LTAR SE+D+VLGLE+GADDY+ KPF+ REL+ARIRAILRR+ Sbjct: 61 EVLKSIRKAASIPVIFLTARSSEIDKVLGLEIGADDYIVKPFSPRELLARIRAILRRTQN 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + N + +D ++ ++G+ L L+ E+ + L + G++ +RE Sbjct: 121 PLVLEQKSNQKLRISLD-------KKLVYYNGKNLNLSPYEYKTMELFFKWPGRIFTREE 173 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + V + FDRA+D I N+R + + +T RG+GY Sbjct: 174 IMDSVWTEPEDSFDRAVDTVIKNIRARFKEMDPNFDPIETRRGQGY 219 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 146/228 (64%), Gaps = 7/228 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 N IL+VDD++E+ +LL+ L+ EG++V A GE+AL +L+ + + L++LDVMMP +G Sbjct: 3 NNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGF 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R+ + P++ML+A+G ++D++ G+ GADDY+ KPFN+ EL RIRA+ RR+++ Sbjct: 63 EVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYF 122 Query: 121 --SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ Q ++D + +++++++ + + + + LT EF +LYLLA + G+V S Sbjct: 123 LNTKIQVSDD----IIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSA 178 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 E + ++V ++ + + +H+S LR KL +G+ T+ G GY Sbjct: 179 EEIFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGY 226 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 148/239 (61%), Gaps = 10/239 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 +IL+V+DD L L KE LE G V V +G +A++ + ++ DL++LD+M+P ++G+ Sbjct: 27 RILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLS 86 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR---- 117 + +R ++ P++MLTAR +LD+VLGLE+GADDY+ KP R L+ARIRA+LRR Sbjct: 87 ICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQ 146 Query: 118 ---SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 + S + + +G L + LV++ +EA + Q+++LT EF LL+LLA G+ Sbjct: 147 GEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLASSAGR 206 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHP-WFKTLRGRGYLMVSAS 232 V+SRE + + G DR+ID+ +S +R K+ D HP KT+R +GYL V + Sbjct: 207 VLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGD-DPVHPRRIKTVRSKGYLFVKEA 264 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 142/233 (60%), Gaps = 8/233 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M K+L+VDD+ + +LL+ L+ F+V A +G AL +++++ D++LLD+M+P+ +G Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 60 IDTLKALRQT-HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + LK +R + TPVI+LTA+ +E D+V GLE+GADDY+PKPF+ RE++ARI A+LRR Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNP-----GRQEASFDGQTLELTGTEFTLLYLLAQHLG 173 SE N N +P D P + + S + Q L+LT EF L+ L H Sbjct: 121 EKSE-PSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHEN 179 Query: 174 QVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 QV+SR+ L Q V G + R +D+ I++LR K+ + KT+RG GY Sbjct: 180 QVLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGY 232 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 136/228 (59%), Gaps = 15/228 (6%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDT 62 IL+V+D+ ++ L LE GF G++A + ++ DL+LLD+M+P K+G++ Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 K LR Q P+IMLTAR E+DR+LGLELGADDY+ KPF+ RE+VAR++A+LRRS+ + Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNTPQ 126 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 ++ P ++L+ +E S G +L+LT +EF +L ++ +V SR L Sbjct: 127 EESKRITEGP------IILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELL 180 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRK----LPDRKDGHPWFKTLRGRGY 226 +G + +DR ID HI NLR+K LPD + H + G GY Sbjct: 181 DLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIY----GAGY 224 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 135/231 (58%), Gaps = 2/231 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 ++ I +VDDD E+ SLL + L GF+ A + + L++ L+++D+M+P NG Sbjct: 4 IHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ + LR PVI LTA G DR++GLELGADDYL KPF REL+ARIR +LRR+ Sbjct: 64 LELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRRTE 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ + +P L+ R + DG + L+GTE+ LL + Q+ +V+SR+ Sbjct: 124 GGARRDQPET-TPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRVLSRD 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L + G+ P+DR+ID+ IS LR +L D KT+RG GY++ + Sbjct: 183 ELLERTQGRNAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLAT 233 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 138/227 (60%), Gaps = 8/227 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGIDT 62 IL+VDD+ + ++ K LE G+ V+ A G + L + LD+ DL++LD+M+P +G++ Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 LR+ ++MLTAR E+DRV GL +GADDYL KPF+ RELVAR+ AILRR Sbjct: 65 TARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRR----- 119 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 ++ S + + ++P +EA GQ LELT TEF LL LA++ +V+SRE L Sbjct: 120 -RRGKPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLI 178 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 ++V G DR +D+++S +RRK+ + G +T RG GY V Sbjct: 179 EKVWGADFYGTDRVVDVYVSQVRRKI-EALTGENLIRTARGVGYRFV 224 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 137/234 (58%), Gaps = 8/234 (3%) Query: 1 MNK---ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPK 56 MNK +LLV+D+ ++ +L+ LE E F V+ A + AL++L +DL++LDVMMP Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60 Query: 57 KNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL- 115 +G T + +R+ + P++ LTARG E DRVLG ELGADDY+ KPF+ RELV R++A+L Sbjct: 61 LDGWTTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLR 120 Query: 116 RRSHWSEQQQNNDNGSPT--LEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLG 173 RRS Q+ +P L L L P ++A G+TL L+ E+ LL LAQ+ G Sbjct: 121 RRSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAG 180 Query: 174 QVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDG-HPWFKTLRGRGY 226 +V+SR+ L V G R +D H+ LR KL + T+RG GY Sbjct: 181 RVLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGY 234 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 142/226 (62%), Gaps = 10/226 (4%) Query: 5 LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGIDTL 63 L+V+DD +++ L++ +L E F V VAHDG++ L++ + +L++LD+M+P +G + Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 KALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR T TP+IMLTA+ E D+VLGL++GADDYL KPF RE +AR+ A+LRR+ Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRT-- 126 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ Q +D TL L + P +A + +T++LT EF LL +LA++ G+ + RE Sbjct: 127 TDYNQPDD----TLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQ 182 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L ++V G R ID HI LR+K+ + G+ + +T+ G GY Sbjct: 183 LLEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGY 228 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 138/232 (59%), Gaps = 2/232 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 KIL+V+DD ++ ++ LLE E + VI A +G L LLD++IDL++LD+MMPK NG+ Sbjct: 10 KILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLLDETIDLVILDIMMPKLNGLKV 69 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R+T PV+ LTA+ E D++LGL +G DDYL KPF+ EL+ R++A+LRR + Sbjct: 70 CEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRRYQVYQ 129 Query: 123 QQQNNDN-GSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + N+N +E+ ++ LN E DG +E++ E+ +L L+ QH G++ S +++ Sbjct: 130 GKSTNENEAEKIIEIGSIKLNTAFNEIVADGNKVEVSDLEYKILRLMMQHPGKIFSTQNI 189 Query: 182 SQEVLGK-RLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + V + + +HI LR K+ + KT+ G+GY A+ Sbjct: 190 YESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRFEDAT 241 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/228 (41%), Positives = 140/228 (61%), Gaps = 9/228 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M+ IL+VDD+ L +L+ LE EGF+V+ A DG +AL + + DL++LD+MMP+ G Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + L+A + +TPVI+LTA+ + D++LGLELGADDY+ KPFN REL+ARIRA+LRR+ Sbjct: 61 YEFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + L +VL+ + G+ ++LT +EF +L L GQV SR Sbjct: 121 QTPLEPD------VLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRL 174 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHP-WFKTLRGRGY 226 L V G +R ID+HI NLR K+ + HP + +T+ G GY Sbjct: 175 DLLDRVSGDAFEGSERTIDVHIRNLRAKI-EADPRHPQYIETVYGMGY 221 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 132/234 (56%), Gaps = 11/234 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M IL+V+D+R + LL L EGF I A GE+A+ LL IDL ++DVMMP +G Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D +K LR+T PVI LTAR E DR+ GL LG DDYL KPF+ EL+ARI+A+LRR++ Sbjct: 61 FDFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTY 120 Query: 120 WSEQQQNNDNGS----PTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQV 175 Q+ N G L ++ + LN + D + LT EF LL L +H GQV Sbjct: 121 ---QRNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQV 177 Query: 176 VSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 +REHL V G +R +D HI LR KL K +T+ G GY +V Sbjct: 178 FTREHLLTSVWGLDYEGTERTVDTHIKTLRMKL---KPYGNVIQTVWGIGYKLV 228 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 134/226 (59%), Gaps = 2/226 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 N I++VDD++E+ L+ LE EG+ VI A +G +AL+LL+ + +DL++LD+MMP +GI Sbjct: 4 NTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGI 63 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R+ P+IML+A+ ++D++ GL GADDY+ KPFN EL+AR+++ LRR + Sbjct: 64 EACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRR-YK 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 QN +E+D L +N E + + LT EF +L LLA++ G V S E Sbjct: 123 KFNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEK 182 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + + V + D + +HI LR K+ + + KT+ G GY Sbjct: 183 IYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGY 228 >UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostridiales RepID=B0S0W9_FINM2 Length = 238 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 139/227 (61%), Gaps = 14/227 (6%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHD-GEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 I V+DD+ + L+ L EG++ + D GE L SIDL++LD+M+P K+G++ Sbjct: 18 ICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGLEI 77 Query: 63 LKALRQTHQT---PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 LK +R +T PV+MLTA+ +E D+++GL+ GADDY+ KPF+ EL+AR+RA+LRRS Sbjct: 78 LKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRSS 137 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S+ + + L+ D ++ S DG+ +ELT EF LLY L ++G+V++RE Sbjct: 138 LSKTKSKIIYKNIELDYD-------KRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRE 190 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 ++ ++ G R +D+HI+ LR+KL K+ KT+R GY Sbjct: 191 NIMTKIWGFDFEGESRTVDVHIATLRQKL---KNASSIIKTIRNLGY 234 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 94/231 (40%), Positives = 137/231 (59%), Gaps = 8/231 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGID 61 K+L+VDD+ + +L+ L M G+ V+ A DGE+AL+L + D+++LD+MMPK +G Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ P+IMLTA G DR+ GLELGADDY+ KPF+ +EL ARIRA+LRR++ + Sbjct: 76 VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 ++ S + + L ++ +++ D + + LTG EF+LL LL GQ SR + Sbjct: 136 -AFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADI 194 Query: 182 SQEVLGKRLTPF----DRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 QEV G TP R +D+HIS LR KL T RG GYL Sbjct: 195 LQEVWG--YTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 137/229 (59%), Gaps = 8/229 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSID--LLLLDVMMPKKNGID 61 IL+++DDRE++ +L E L EG+ V++AHDGE L SI LLL+D+M+PK +G + Sbjct: 16 ILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFA-SIHPHLLLVDLMLPKVDGFE 74 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +RQ + P+I+++AR S++D++ L LGADDY+ KPF+ ELVAR+++ LRR H Sbjct: 75 VCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYHRY 134 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + L D L +N R+ DG+ L LT EF LL LA+ GQV S+E L Sbjct: 135 NGLKEQEK---VLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQL 191 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWF-KTLRGRGYLMV 229 V + R + +HI N+RRKL D HP F T+ G GY + Sbjct: 192 YNRVWKQDDADDIRTVTVHIKNVRRKLGD-GSKHPRFIDTVWGIGYKFI 239 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 131/227 (57%), Gaps = 2/227 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 ++LLVDD+ + LL L EGF + DG AL L + + D ++LD+M+P+ +GI Sbjct: 10 KRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGI 69 Query: 61 DTLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K LR + +TP++M++A+ E D+VL LELGADDY+ KPF+ REL+AR++AILRR+ Sbjct: 70 EVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTE 129 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ P + L L P R E D + L LT E+ LL L +H ++RE Sbjct: 130 AEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRE 189 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L + + G R +D+HI LR K+ D + +T+RG GY Sbjct: 190 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGY 236 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 138/231 (59%), Gaps = 9/231 (3%) Query: 1 MNK-ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKN 58 +NK I +V+D+R+L+ LLKE LE F V G++ + + DL+LLD+M+P + Sbjct: 9 INKNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGAD 68 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G+ + +R P+IM+TA+ E+DR+LGLE+GADDY+ KPF+ RE+VAR++A+LRR Sbjct: 69 GVTLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRRG 128 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + + + L+L P + G+ L++T +EF+LL+ H G+V SR Sbjct: 129 -------GEEPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSR 181 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + L ++ G+ +DR ID HI NLR+KL + G +++ G GY + Sbjct: 182 DELIAKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKFI 232 >UniRef50_C0CWY8 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CWY8_9CLOT Length = 231 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 98/231 (42%), Positives = 137/231 (59%), Gaps = 9/231 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQA-LDLLDDSIDLLLLDVMMPKKNG 59 M KIL+VDD+R++ L L +G+ A+DG +A L + D +LLDVM+PK +G Sbjct: 1 MKKILIVDDERDIVECLDMNLRKKGYATAFAYDGTEAVLTARRERPDCILLDVMLPKISG 60 Query: 60 IDT---LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 I+ LKA + T PVIMLTA+G E D+V G + GADDY+ KPF REL ARI LR Sbjct: 61 IEVCHLLKADQATGHIPVIMLTAKGEEDDKVTGFDAGADDYITKPFGWRELFARIEVALR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 RS S Q DN L V L + P + DG+ ++LT TEF +L +LA+H G +V Sbjct: 121 RSQPSAPQSQEDNA---LRVKDLAIYPDKYVVEQDGRRVDLTPTEFGILRVLAEHRGNIV 177 Query: 177 SREHLSQEVLGKRLTPFD-RAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 +R L+ E LG + R++D+H+ NLR+KL D + +T+R G+ Sbjct: 178 TRNELN-EALGITNNGGEIRSLDVHMRNLRKKLGDDIQECRYIETIRRIGF 227 >UniRef50_C6D1N2 Two component transcriptional regulator, winged helix family n=3 Tax=Bacillales RepID=C6D1N2_PAESJ Length = 232 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 139/229 (60%), Gaps = 5/229 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 K+L+V+DD ++S + LE EG+ V A DGE+AL+ + D+++LD+MMPK NG + Sbjct: 2 KVLVVEDDFSISSAITYALEREGYTVRTAADGEKALEKAEVFKPDVIILDIMMPKMNGYE 61 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + L Q + V++LT + +D+VLGLELGADDY+ KPF+ RE++AR++ + RRSH++ Sbjct: 62 VFRKLNQKERPGVLLLTVKNDIVDKVLGLELGADDYMTKPFDIREVLARVKVLYRRSHFT 121 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 +N++ T E+ L + P + DGQ L+LT EF LL LA + QV SR+ L Sbjct: 122 -TFKNSEIEKVTTEMGGLSIEPYSRTVRMDGQELDLTLKEFDLLVELACNPDQVYSRKVL 180 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 ++V R +D+HI LR+KL H +T+ G GY +S Sbjct: 181 LKKVWDIHYAGGTRTVDIHIQRLRKKL---GRWHGLIQTINGIGYKFIS 226 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 156 bits (394), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 140/228 (61%), Gaps = 9/228 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL--DDSIDLLLLDVMMPKKNGI 60 KIL+VDDD+E+ LL ++ EG+ I A+ G++A+ L + I L++LD+MMP +G+ Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSGM 61 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D +K +R+ Q P+I+++A+ +++D++ GL GADDY+ KPFN E++AR++++LRRS Sbjct: 62 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS-- 119 Query: 121 SEQQQNNDNGSP-TLEVDALVLNPGRQEA-SFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 Q N P LEV L + E + G+ ++LT EF +LYLLA H +V S Sbjct: 120 ---QNEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSA 176 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + + + V + + + +H+S+LR K+ + DG +T+ G GY Sbjct: 177 DEIFERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGY 224 >UniRef50_A9KX94 Two component transcriptional regulator, winged helix family n=7 Tax=Gammaproteobacteria RepID=A9KX94_SHEB9 Length = 235 Score = 156 bits (394), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 135/231 (58%), Gaps = 1/231 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 KIL+V+DD L ++E L EG+ V + +G A+ +L+ L++LD+M+P+K+G+ Sbjct: 3 TKILIVEDDLPLAESIQEYLNYEGYQVEIISNGVLAVSRILEWQPALVILDIMLPQKDGL 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R + ++M TARG E+D+++GLE+GADDYL KP R L+A+I+A LRR Sbjct: 63 SVCREVRPQYNGYILMFTARGEEIDQIVGLEIGADDYLLKPVKPRMLLAKIKAFLRRDRL 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 +E N S + L +N ++ + ++LT E+ LL LA++ G ++SR Sbjct: 123 AESIAENQQVSEYISFGQLAINTQKRSVTLADVAIKLTDGEYDLLITLAKNAGNILSRND 182 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + ++V G +R +D HI LR+KL D KT+R +GYL VS+ Sbjct: 183 IVEQVKGYYYDGIERGVDNHICQLRKKLGDDARNPFKIKTIRSKGYLFVSS 233 >UniRef50_Q188S4 Putative lantibiotic resistance two-component response regulator n=6 Tax=Clostridium difficile RepID=Q188S4_CLOD6 Length = 230 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 129/226 (57%), Gaps = 1/226 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 M+KIL++DD+ +L LL++ L+ +G V++A+DG+ ++L DL++LD+MMPK NG Sbjct: 1 MSKILIIDDEMDLVMLLEDELKAKGHEVLIAYDGQAGIELSKQEPDLIILDIMMPKMNGF 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +A+R P+I L+A+ SE D++ GL G DDY+ KPF REL+ARI A LRR Sbjct: 61 EVCQAIRDDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 S Q N +N TL L L + DG+ ++LT E+ ++ LLA H GQV SRE Sbjct: 121 S-QYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQ 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + ++V G + + +R K + T+ G GY Sbjct: 180 IYEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGY 225 >UniRef50_C5CP31 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=C5CP31_VARPS Length = 249 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/232 (40%), Positives = 132/232 (56%), Gaps = 6/232 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M +ILL+DDD L + L G+ + A + L L D +LDVM+P+ +G Sbjct: 18 MPRILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAKLRAGPFDAAILDVMLPEMDG 77 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +R+ P++MLTARG +DRV+GLELGADDY+PKPF RELVAR++ ILRR Sbjct: 78 FALCREIRKESDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILRRQR 137 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S N NG+ D L ++ R++ G+ +ELTGTEF LL LLA G+V SR+ Sbjct: 138 -STPAAANGNGTQHRVFDGLSIDLDRRQVLRHGERVELTGTEFELLALLAAEPGKVFSRD 196 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + + G + RA+D+ +S LR+KL + KTLR GY + A Sbjct: 197 DILNRLRGHEAELYTRAVDIVVSRLRKKL----EPLDCIKTLRNAGYALAVA 244 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/230 (40%), Positives = 137/230 (59%), Gaps = 14/230 (6%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGIDT 62 IL+VDDD EL L+ LE + + + A +GE+ALD + + + DL+LLD+M+P +G+ Sbjct: 8 ILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGLSV 67 Query: 63 LKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 LK +RQ TPV+MLTARG DRV GL+ GADDYL KPF+ EL+ARIRA+LRR Sbjct: 68 LKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDGKR 127 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + L L LN + + D + LT EF++L L + G VSR ++ Sbjct: 128 DT---------ILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNM 178 Query: 182 SQEVLGKRLTPFDRA--IDMHISNLRRKLPDRKDGH-PWFKTLRGRGYLM 228 ++ V G PF + +D+HI NLR+K+ D + P +T+RG G+++ Sbjct: 179 AEHVWGNEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFII 228 >UniRef50_A1U6I5 Two component transcriptional regulator, winged helix family n=5 Tax=Gammaproteobacteria RepID=A1U6I5_MARAV Length = 234 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 143/227 (62%), Gaps = 4/227 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGID 61 KIL+V+DD+ L+ L LL G+ V+ ++G+QAL + +DL+LLDV++P+ NG + Sbjct: 10 KILIVEDDQSLSDQLSGLLASRGYQVVQRYEGDQALITAMGQRLDLILLDVLLPRMNGFE 69 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ LR+T QTPV+MLTA G+E +R++G + GADDY+PKPF+ EL+ RI A+LRR+ Sbjct: 70 FLEKLRKTRQTPVMMLTACGAEQERIMGYQQGADDYVPKPFSFTELLLRIEALLRRT-LG 128 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 E Q D TL L L+ SF G + LT +F LL++L H + +S+ +L Sbjct: 129 ETDQRADPA--TLAAGELKLDRHAMTVSFQGNPVSLTPIQFRLLWILVLHQSEALSKPYL 186 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 Q VL K + +DR++DMH+S +RRKL + +T+ G+GY Sbjct: 187 YQVVLEKEFSRYDRSLDMHLSRVRRKLVEAGVAGDRLQTVHGKGYCF 233 >UniRef50_A1VTZ3 Two component transcriptional regulator, winged helix family n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VTZ3_POLNA Length = 255 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 96/230 (41%), Positives = 131/230 (56%), Gaps = 10/230 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNV-IVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 +L++DDD EL ++ ELL +G + A L D+LLLD+M+P NG+D Sbjct: 31 VLMIDDDAELAGMVGELLLGQGMQLRSAATAALGLAALAQRQPDVLLLDLMLPDANGLDV 90 Query: 63 LKALRQT-HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR++ + PV+MLTARG DRVLGLELGADDYL KPF+ RELVARIRA+ RR + Sbjct: 91 CRRLRESGNDLPVLMLTARGDPFDRVLGLELGADDYLGKPFDPRELVARIRALARRGQSA 150 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + S L + L L+ + A+ L LT +EF LL LA G VSRE L Sbjct: 151 RR-------STQLRFNGLSLDLLARRATCPAGALALTSSEFKLLLALASQPGASVSREAL 203 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 V P DRA+D+ ++ LR+KL + W +T+RG GY+ + Sbjct: 204 CAAVQPGSYMPLDRAVDVQVARLRKKLAAAGE-REWIETVRGEGYVFTGS 252 >UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphaproteobacteria RepID=Q0BQV4_GRABC Length = 253 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 137/229 (59%), Gaps = 4/229 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGIDT 62 IL+V+DD + L+ +L GF DG + ++ + DL+L+DVM+P +G D Sbjct: 22 ILVVEDDPGMRVLIMRVLRENGFRTSAVRDGREMWPSIEQLMPDLILMDVMLPGGSGFDL 81 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 KALRQ+ Q P+IM++ARG E+DRVLGLELGADDY+ KPF +EL+AR+RA+LRR +E Sbjct: 82 CKALRQSSQVPIIMVSARGEEMDRVLGLELGADDYIAKPFGKQELLARVRAVLRRGPVNE 141 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEAS-FDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 S T+ ++ R+E + G ++L+G E+ LL ++ +V+ R+ L Sbjct: 142 PTAKGK--SETISFAGWQIDMKRRELTDPSGAVVDLSGAEYDLLLSFLENAQRVIGRDRL 199 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + + DR+ID+ +S LRRK+ +R P +T+RG GY+ + Sbjct: 200 LELSRTRLGDVSDRSIDVLVSRLRRKIGNRVGERPLIRTIRGVGYMFAA 248 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 137/233 (58%), Gaps = 6/233 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL---DDSIDLLLLDVMMPKKNG 59 +IL+VDDD + +LL L +GF+V V G + +D+ D +DLL+LD+M+P ++G Sbjct: 16 RILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAE-MDIALAADPRVDLLVLDIMLPGEDG 74 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + L + PVIML+ARG ++DR++GLE+GADDY+PKPFN REL+ARIRA+LRR Sbjct: 75 LSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + V ++P ++A L+LT E+ LL + +V++R+ Sbjct: 135 MEPDARGKQDER--IRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVINRD 192 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + + G + FDR+ID+ I+ LRRK+ + T+ G GYL + Sbjct: 193 QIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSG 245 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 136/226 (60%), Gaps = 3/226 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 ILLV+DD+ + ++ + L E ++V A DG A+++ + S D++LLD+M+PK +G + Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 LK +R PVI+ TA+ S+ D++LGL LGADDY+ KPF+ EL+ARI+A +RR+ Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 +N+ + ++ L++N + S G L LT TEF ++ LLA + G+ S+E L Sbjct: 123 SSRNSQD--MVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLY 180 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + + ++ HI+ LR KL D + + + KTL G GY M Sbjct: 181 NAIWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKM 226 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 136/226 (60%), Gaps = 7/226 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGID 61 KIL+++D+ + ++ + EGF HDG + +++ DL++LD+M+P +G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+T P+IMLTA+ +E D+V+G E+GADDY+ KPF+ LVARI+A++RR + Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLE-LTGTEFTLLYLLAQHLGQVVSREH 180 + +++ +E + +N +E +G+ +E LT EF LLY L Q+ QV SRE Sbjct: 122 GKAVIDED---MIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQ 178 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L ++V G + +R +D+HI LR+KL + P+ T+ G GY Sbjct: 179 LLEQVWGYQFYGDERTVDVHIKRLRKKLA--SEDKPFLYTVWGVGY 222 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/225 (41%), Positives = 131/225 (58%), Gaps = 9/225 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+VDD+ ++ LL L+ E + A +G++ALDL+ D+ L+LLDVMMP+ +G+ Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +R+ P+IMLTAR ELDR+ GL++GADDY+ KPF+ REL+ARI A LRRSH Sbjct: 67 ACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHRF 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 Q S TL + L L+ + G+ + LT EF LL+L Q+ +V SRE L Sbjct: 127 TVDQ-----SATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQL 181 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 ++ G R +D HI LR KL + +T+ G GY Sbjct: 182 LDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGY 223 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 138/227 (60%), Gaps = 9/227 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 IL+ DD++++ L + +E EG+ + A +G++ LD+++ +DL+LLDVMMP+ +G++ Sbjct: 8 ILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGMEA 67 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ LR + + PVIM+TA+ E DRV GL GADDY+ KPF+ +EL+ARI A +RR++ Sbjct: 68 LRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRNYGY- 126 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 N+D L+ ++ +N ++ DG+ + LT EF LL +H QV +RE L Sbjct: 127 ---NDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQLL 183 Query: 183 QEVLGKRLTPFD-RAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 V G T R +D H+ +R K+ G +F+T+ G GY++ Sbjct: 184 DHVWGVNYTTGGHRTVDTHMKTMRFKMG---SGGDYFRTVYGVGYVL 227 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 132/228 (57%), Gaps = 2/228 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQA-LDLLDDSIDLLLLDVMMPKKNGID 61 IL+VDDD E+T LL E L F V A D + L +++L++LDVM+P +G+ Sbjct: 34 SILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPGTDGLT 93 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ Q PVIMLTAR + DR++GLE GADDY+ KPF RELVARI +LRRS + Sbjct: 94 LSREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLRRSQGA 153 Query: 122 EQQQNNDNGSPTLEVDALVLN-PGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ N S + D L+ R S G + L+ EF LL Q ++ SR+ Sbjct: 154 KEVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRRLFSRDQ 213 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L ++ G+ + F+R+ID+ +S LR+KL D D KT+RG GY+ Sbjct: 214 LMEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMF 261 >UniRef50_C4TUI5 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Yersinia RepID=C4TUI5_YERKR Length = 235 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 133/234 (56%), Gaps = 17/234 (7%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDT 62 +L++DDD E+ SLL E F V+ DGE L L +S+DL++LDVM+P +G Sbjct: 6 LLVIDDDEEIRSLLTEYFTKANFRVLSLPDGEHLLATLKQESVDLVILDVMLPGDDGFTL 65 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + RQ P+IMLTA E D+V+GLELGADDYL KPF+ REL+AR++A+LRR+ + Sbjct: 66 CRKARQVSAVPIIMLTAASDESDKVIGLELGADDYLAKPFSARELLARVKALLRRNQIVQ 125 Query: 123 QQQNNDNGSPTLEVDALVLN------PGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 SP E L N R+ Q+ L+G EFTLL L +H Q++ Sbjct: 126 --------SPGTEARFLCFNGWKLDLVRRELIDPQKQSEPLSGIEFTLLSLFLRHPNQIL 177 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 R+ +S+ + P +R ID+ IS LR++L D + +TLR +GY++ Sbjct: 178 DRDQISEITRRRENNPLERGIDVQISRLRQRLQDSQ--RLLLRTLRNQGYMLCC 229 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/235 (38%), Positives = 136/235 (57%), Gaps = 6/235 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNG 59 M+KIL+VDD+ + +LL L+ G+ V+ A DG AL L L S +LLD+M+PK +G Sbjct: 3 MDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDG 62 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 ++ K LRQ QTP+I++TA+ E D+V GLELGADDY+ KPF+ RE++ARI+A++RR+ Sbjct: 63 MEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRT 122 Query: 119 HWSEQQQNNDN----GSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 E + V L ++ + + +G+ + LT EF LL + G+ Sbjct: 123 TPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGR 182 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 V+SR+ + V G R +D+HIS+LR K+ +T+RG GY V Sbjct: 183 VLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFV 237 >UniRef50_A3Y9U3 Response regulator protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y9U3_9GAMM Length = 243 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/238 (39%), Positives = 137/238 (57%), Gaps = 13/238 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KILL+DDD L LLK+ L ++ A+ LL+ + ++LDVM+P+++G + Sbjct: 4 KILLIDDDESLADLLKQYLARYDMQLVSANCPSLGYQLLEKEQPQAIILDVMLPEEDGFE 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R+ P+IMLTARG +DRV+GLE+GADDYL KPF RELVAR++ ILRR Sbjct: 64 VCKHVRRKSDIPIIMLTARGDVMDRVIGLEIGADDYLGKPFEPRELVARLQTILRRLEKQ 123 Query: 122 EQQQNNDNGSPT---LEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 Q++N + S L + +N RQ+ Q L+LT TE+ LL L+A+ V SR Sbjct: 124 SQKENQTDASSAEHILTFKGMGINTERQQVKLFDQRLDLTTTEYRLLLLMAKSPQTVFSR 183 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKL----PDRKDGH---PWFKTLRGRGYLMV 229 + + + G + F R++D+ IS LR+K PD D H + KT+ G GY V Sbjct: 184 DDILNHLKGVEIELFSRSVDIAISRLRQKFKAATPD--DHHVSVDFIKTVWGAGYCFV 239 >UniRef50_B0KI24 Two component transcriptional regulator, winged helix family n=3 Tax=Pseudomonas putida RepID=B0KI24_PSEPG Length = 240 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 94/236 (39%), Positives = 143/236 (60%), Gaps = 12/236 (5%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGIDT 62 +L+VDDD E+ LL + L+ G+NV+ A DGEQ + L ++L++LD+M+P ++G+ Sbjct: 5 LLVVDDDDEIRELLCDYLKDAGYNVLAAADGEQMREQLARQKVELVVLDLMLPGEDGLSL 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + L+ T VIML+A+GS LDR++GLE+GADDYL KPF REL+ARI+A+LRR + Sbjct: 65 CRQLQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQRLD 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQE------ASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 Q P + +DA + R E DG+TL L +++ +L L + +VV Sbjct: 125 AQAEE----PAV-MDAQLFAGFRLEHVKRLLTRPDGETLTLPRSDYRVLRELLEANNRVV 179 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 SR+ L++ G+ P DR++DM +S LR++L G T+R GYL+ AS Sbjct: 180 SRDQLTRSAFGRDHLPDDRSVDMCVSRLRQQLRRAPAGAAQILTIRNEGYLLSIAS 235 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 134/228 (58%), Gaps = 3/228 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNG 59 M IL+VDD+ + +LL+ LE E F V+ A DG QAL + L D ++LD+M+PK +G Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 I K +R+ +TP+++LTA+ +E D+++GLE+GADDY+ KPF+ RE++ARIRAI RR+ Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +Q + S T+ V L ++ A L LT EF LL L +V SR Sbjct: 121 -TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSR 179 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 E L V G R +D+ +S+LR K+ D + KT+RG GY Sbjct: 180 EKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGY 227 >UniRef50_A7HP70 Two component transcriptional regulator, winged helix family n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HP70_PARL1 Length = 257 Score = 154 bits (389), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/233 (39%), Positives = 130/233 (55%), Gaps = 7/233 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 +LLVDDD ++ ++ L G + A D AL++ DL++LD+++ NG D Sbjct: 20 SLLLVDDDPDIREEMRTYLSANGMIITEAADAASALEMFSGGKFDLVILDLLLGADNGFD 79 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ +RQTH TP IM+T + D+V+GLELGADDY+ KP N REL+ARIRA+LRR+ S Sbjct: 80 VLREIRQTHSTPCIMVTGQSEATDKVVGLELGADDYVVKPVNLRELLARIRALLRRTANS 139 Query: 122 EQQQNNDNGSPTLEVDALV---LNPGRQE-ASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 N +A +P R+ + DG + LT E LL L H G + Sbjct: 140 GGSGARTNAGAADSDEAAAQWKFDPHRRRLCAPDGALVPLTTAECDLLIELVAHEGNPQT 199 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPW-FKTLRGRGYLMV 229 RE L + V ++ P+DR++D + LRRKL D HP KT+RG+GYL Sbjct: 200 REELCRRVFNRQWQPYDRSLDSIVVKLRRKLEPNPD-HPMVIKTIRGKGYLFT 251 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 139/227 (61%), Gaps = 7/227 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M KILLV+DD+ + + L LL EG+ V VA+DG +AL+ + DL+LLD+M+P+K+G Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K +R+ P+IMLTA+ E+D+VLGL++GADDY+ KPF +EL+ARI A+LRR Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S+ ++ +P E+D + ++ G+ + L+ EF +L LL G+V +R+ Sbjct: 121 -SDLSKSQKIVAPPFEMDLV-----KRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRD 174 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + + + G+ RA+D++I LR K+ D + T+R GY Sbjct: 175 MIIKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGY 221 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 130/230 (56%), Gaps = 8/230 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGI 60 KIL+VDDD + L+ L E F+ + +DGE+A+ + +L+LLD+M+P +G Sbjct: 5 QKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGY 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR--- 117 + + +R+T P+IML+A+G D+VLGLELGADDY+ KPF+ +ELVAR++A+LRR Sbjct: 65 EVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 S + +Q + L++N ++ G ++E+ E L Y LA H QV + Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPW-FKTLRGRGY 226 RE L + G R +D+HI LR K+ KD W T+ G GY Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKI---KDHISWRLSTVWGIGY 231 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 132/228 (57%), Gaps = 8/228 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 M +IL+++D+ + + LK+ LE EG+ VI A DGE+ L ++ + DL+LLDVMMPK +G Sbjct: 1 MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDG 60 Query: 60 IDTLKALRQ-THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 LR+ + P++MLTA+G DRV GL+ GADDYL KPF+ EL+AR+RA+LRR Sbjct: 61 FALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRR- 119 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 Q TL + ++ +Q A + L T E+ +L LL++ G+ +SR Sbjct: 120 -----HQREKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISR 174 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 E V G P R +D HI++LR K+ + W KT+ G GY Sbjct: 175 ERFLDVVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGY 222 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 139/231 (60%), Gaps = 4/231 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 +IL+V+DD ++ +L L E + V+ + DG + L LL+ + D L+LD+M+P +G+ Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 61 DTLKALRQ-THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + R T TP+I+ +AR SE+ R+LGLELGADDYL KPF+ ELVAR++A+LRR Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + D G TL+V L ++P +EAS DG L+LT EF LLY A+H G+V SR Sbjct: 125 ALARDSRIDAG--TLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRM 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L V G + ++ ++ HI+ LR K+ T+ GRGY + + Sbjct: 183 DLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAA 233 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 135/227 (59%), Gaps = 9/227 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 M +IL+ DD+ ++ LL LE EG+ + A +G +A++ L +++ L+LLDVMMP+ +G Sbjct: 5 MFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDG 64 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +R+ P+I+LTAR ELDR+ GL++GADDY+ KPF+ REL+ARI A LRR+H Sbjct: 65 LTACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTH 124 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++Q T +V L ++ + S G+T+ LT EF LLYL + +V SRE Sbjct: 125 SFSKEQE-----ATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSRE 179 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L ++ G R +D HI LR KL + + +T+ G GY Sbjct: 180 QLLDQIWGTEYHGNLRTVDTHIKTLRLKLG---EAGGYIQTVWGIGY 223 >UniRef50_C8P1C0 Regulatory protein VanR n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1C0_ERYRH Length = 231 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 138/228 (60%), Gaps = 2/228 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 M KIL+VDDD+E+ L+K LE++G+ V+VA DG A+ LD+SI L++LDVMMP+ G Sbjct: 1 MKKILIVDDDKEIRDLMKRYLEIDGYEVVVASDGHDAMRALDESIKLVILDVMMPEITGF 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS-H 119 + +A+R+ + P++ ++A+ +E D+ +G +G DDYL KPF+ EL R++++LRR Sbjct: 61 EVSEAIRKHYNVPILFVSAKATEQDKFVGFSVGGDDYLSKPFSFSELSLRVKSLLRRYIQ 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + +N + +D++ ++ + DG L+LT EF +L LLA + G++ S + Sbjct: 121 YDRATENALEQNKVNTIDSITIDLEKGITLKDGLPLDLTEREFRILKLLATNRGKIFSIQ 180 Query: 180 HLSQEVL-GKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + + V + L + +HI NLR+K+ + + K + GRGY Sbjct: 181 SIYENVWQDEYLYSSANTVMVHIRNLRKKIENCPENPKIIKNIWGRGY 228 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 94/228 (41%), Positives = 132/228 (57%), Gaps = 7/228 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 +LLVDDD + L + LE GF+V+ A DG AL L+ +D+++LD+M+P+ +G Sbjct: 1 MLLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQV 60 Query: 63 LKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L +R+ PVIMLTA G E DR++GL+ GADDYL KPF+ RELV+R+RA+LRR+ + Sbjct: 61 LAEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLA 120 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + P L VD ++ L LT EF LLY LA H QV SREHL Sbjct: 121 PADEGKLLRHPGLIVDV-----AQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHL 175 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 V G R +D+H++ LR+KL + + +T+ G+GY V Sbjct: 176 LDRVWGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFV 223 >UniRef50_Q7UJC9 Probable two-component response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UJC9_RHOBA Length = 237 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 138/228 (60%), Gaps = 7/228 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 +++LLV+DD L +++ + L GF+V + +DG+ A ++ D D ++LD+ +P NGI Sbjct: 14 DRLLLVEDDTHLAAMVSDFLHENGFHVEIENDGKLAAQRIVHDRFDAIVLDIGLPSMNGI 73 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D +++R P+I+LTARG E+D V+ LE+GADD++ KP R L+AR++ LR+S Sbjct: 74 DVCRSVRNQFSGPIIVLTARGEEIDEVVALEVGADDFMSKPVRPRALLARLKNHLRKSDA 133 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ + V LV+ P R++ + G +++T EF L+ LA G VV+R+ Sbjct: 134 QLTDEDR------IIVGDLVVTPARRQVTIAGDPVDMTTAEFDLIEYLALRAGSVVARKD 187 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + ++LG DR+ID+ +S +RRKL D + K++RG GYLM Sbjct: 188 IYVDLLGLPYDGLDRSIDLRVSRVRRKLGDDPNQPTRIKSVRGVGYLM 235 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 94/228 (41%), Positives = 134/228 (58%), Gaps = 8/228 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDT 62 +LLV+DD + L+ L EG+ V+VA DGE+ L L IDL+++DVM+P+ NG + Sbjct: 19 VLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGFEL 78 Query: 63 LKALRQTHQT-PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ LR +T PVIML+ARG+E+D+V+GLELGA+DY+ KPF+ EL+AR++A+LRR + Sbjct: 79 LRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDAIA 138 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 L +V+N +E +ELT TEF +L LA+ G+V+SRE + Sbjct: 139 RAD------GAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQI 192 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 +V G R ID I LR KL + T+RG GY V Sbjct: 193 QAKVWGPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRFV 240 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 139/230 (60%), Gaps = 8/230 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 IL+VDD++E+ L++ L+ EGF V + G++AL+ ++ ++D+ +LD+M+P +G Sbjct: 5 ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDGFHI 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR----S 118 + +R+ + P+IMLTA+ ++D+++GL +GADDY+ KPFN E+VAR++ LRR + Sbjct: 65 CQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMRYN 124 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + EQQ N ++ L++N + S G+ + LT EF++L+ L +H G+VV Sbjct: 125 NSYEQQSIIVN---EYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPS 181 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 E L + V G++ + + HI LR K+ + + KT+ G GY + Sbjct: 182 EELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTI 231 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 143/230 (62%), Gaps = 10/230 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIV--AHDGEQALDLLD-DSIDLLLLDVMMPKKN 58 N+IL+V+DD E+ LL+ + M+ N V +DG AL+ DL+LLD+ +PK N Sbjct: 8 NQILIVEDDLEIVDLLE--IHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLN 65 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G++ + LR+T TP+IM+TA+ E+D+VLGLE+GADDY+ KPF+ REL AR +A++RRS Sbjct: 66 GVEVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRS 125 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + QQ ND+ + L+ L +N + + +G+ ++L+ EF LL LLA + G+ SR Sbjct: 126 D-AANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSR 184 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKL-PDRKDGHP-WFKTLRGRGY 226 L + G + ++ ++ HI+ LR K+ PD G+P + T G GY Sbjct: 185 SELLDVIWGYNFSGYEHTVNSHINRLRAKIEPDM--GNPIYILTTWGIGY 232 >UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacillales RepID=C3ALG3_BACMY Length = 238 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 136/224 (60%), Gaps = 2/224 (0%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 IL+VDD+ E+ +L+ LEMEGF+++ A DG+ AL+ + IDL ++D+MMP NG + Sbjct: 5 ILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGYEL 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 +K +R+ ++ P+I+L+A+ E+D+++GL LGADD++ KPF+ E++ARI+A LRR++ Sbjct: 65 IKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYDFN 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 N GS T +D LVL+ G ++L+ E+ LL L G++ +++ + Sbjct: 125 TDLLNQEGSQTC-IDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQIF 183 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + V D I + IS LR K+ D + KT+RG GY Sbjct: 184 ENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGY 227 >UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=18 Tax=Proteobacteria RepID=Q4ZUU7_PSEU2 Length = 259 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 93/228 (40%), Positives = 129/228 (56%), Gaps = 7/228 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGID 61 + L+VDDD + LL + L N DG Q L D++ D+++LD+M+P ++G+ Sbjct: 31 RALIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDGLS 90 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR T P++MLTAR DR++GLELGADDY+ KPF RELVARI+ ILRR Sbjct: 91 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 150 Query: 122 EQQQNNDNGSPTLEVDALVLNPG-RQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 Q T+ DA LN RQ + DG + L+ EF LL + + +V+SRE Sbjct: 151 RSDQRT-----TIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQ 205 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L G+ + FDR+ID+ +S LR+KL D KT+RG GYL Sbjct: 206 LLDAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLF 253 >UniRef50_C6I3R1 Two-component system response regulator n=20 Tax=Bacteroidales RepID=C6I3R1_9BACE Length = 229 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 84/209 (40%), Positives = 133/209 (63%), Gaps = 7/209 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI-- 60 +IL+VDD+ +L +LK LE EG+ V A+ E+AL + S LLLLDVMM + +G Sbjct: 5 RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKMNISSYHLLLLDVMMGEISGFKM 64 Query: 61 -DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LK ++T Q P+I +TA+ +E D V G LGADDY+ KPF+ RE++AR++A+LRR+ Sbjct: 65 ANLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTA 124 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S+ ++ L +LV++ +++ S DG+ + LT EF +L+LL Q+ G+V SRE Sbjct: 125 TSDTEK----APEQLCYQSLVIDITKKKVSIDGEEVPLTKKEFEILFLLLQNKGRVFSRE 180 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKL 208 + + + DR ID++I+ LR+K+ Sbjct: 181 DILSRIWSDEVYVLDRTIDVNITRLRKKI 209 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 98/234 (41%), Positives = 136/234 (58%), Gaps = 5/234 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M +IL+VDD+ + +++ E EGF V GE AL L +++ DLL+LD+ +P +G Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60 Query: 60 IDTLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR- 117 L+ +R + + PVIMLTAR E+DRV+GLELGADDY+ KPF+ RELVAR+RA+LRR Sbjct: 61 FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + S +Q + +PT L L+ R+ A+F L L EF LL LA H GQV + Sbjct: 121 AEASRLRQQIGDAAPT--SSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFT 178 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 RE L +V G R +D+HI LR KL + +T G GY + Sbjct: 179 REVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIEG 232 >UniRef50_A5VZA1 Two component transcriptional regulator, winged helix family n=27 Tax=Gammaproteobacteria RepID=A5VZA1_PSEP1 Length = 260 Score = 153 bits (386), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 134/234 (57%), Gaps = 9/234 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 IL+VDDD+E+ LL+ L GF V DG+ L+ + DL++LDVM+P ++G Sbjct: 25 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 84 Query: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + +RQ + P+IMLTA E DRV+GLELGADDYL KPF+ REL ARI+A+LRR Sbjct: 85 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 144 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNP-GRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 S + + GS L D L+ + DG+ + L+G +F LL L H Q++ Sbjct: 145 SEFGQAA----PGSAVLAFDDWRLDTVSHRLFHRDGEEVILSGADFALLKLFLDHPQQIL 200 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 R+ + G+ P DR +DM +S LR++L D +T+RG GYL+ + Sbjct: 201 DRDTIGNATRGREPMPLDRIVDMAVSRLRQRLRDTDKPPRLIRTVRGSGYLLAA 254 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 134/228 (58%), Gaps = 10/228 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 +L+VDDD+++ LL E L+ G V +AHDGE+ D++ ++DL++LDVM+P K+GI+ Sbjct: 83 VLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSGIEI 142 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R+ + P+IMLTA D++LGLE+GADDYL KPF+ REL+ARIRA+LRR Sbjct: 143 CQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRR----- 197 Query: 123 QQQNNDNGSP---TLEVDALVLNPGRQE-ASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + N P + L+ R+ S +ELT EF LL + ++SR Sbjct: 198 LENNRAPSRPVTHSYRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHILSR 257 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + L + + + +DR++D+ IS LRRKL D T+R GY Sbjct: 258 DQLMEMAGNQAVYGYDRSVDILISRLRRKLNDDSRSPKLILTIRNGGY 305 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 152 bits (385), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 136/229 (59%), Gaps = 13/229 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+VDDD ++ +++K E E FNV A+ + L+ D DL++LD+M+P +G+D Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 62 TLKAL-RQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 +K L R+ + PVI LTAR S+LD +LGLELGADDY+ KPFN R L+ARI+A+ RR Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + +N +++ + ++ DG+ EL EF LL L+ ++ G+V +R+ Sbjct: 122 GPKDRN------VVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQE 175 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + V G R +D+HIS LR K+ G + KT+RG GY +V Sbjct: 176 ILDRVWGMDFFGDFRTVDVHISKLREKI-----GSEFIKTVRGVGYKLV 219 >UniRef50_P69229 Transcriptional regulatory protein baeR n=214 Tax=Bacteria RepID=BAER_ECOL6 Length = 240 Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 7/225 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGID 61 +IL+V+D+ +L LL + L + + G+Q L + + DL+LLD+M+P +G+ Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ P++M+TA+ E+DR+LGLE+GADDY+ KP++ RE+VAR++ ILRR Sbjct: 72 LCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKPQ 131 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + Q D SP L+++ GR +AS+ G+ L+LT EF LL L+ G+V SRE L Sbjct: 132 RELQQQDAESP------LIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQL 185 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + DR ID HI NLRRKL + + + G GY Sbjct: 186 LNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGY 230 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 86/209 (41%), Positives = 134/209 (64%), Gaps = 11/209 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGID 61 KIL+V+D+++L +K+ LE+EGF V +A+DG + LDL L + D ++LD+++P +GI+ Sbjct: 2 KILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGIE 61 Query: 62 TLKALR--QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LR + Q P++MLTA GS +RV GL +GADDY+PKPF+ RELVAR+RA++RR+ Sbjct: 62 ICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRNQ 121 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q+ TL+ LV+N +E S G+ L L+ EF+LL L ++ G V SRE Sbjct: 122 VVRQE--------TLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSRE 173 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKL 208 + ++ P +D+++ LR+KL Sbjct: 174 QILDKLWESGFEPRSNIVDVYVLYLRKKL 202 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 131/224 (58%), Gaps = 11/224 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDT 62 +L+VDD+ + L++ L E V+ A DG AL + D+ DL+LLDVMMP+ +G T Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ +R+ PVIMLTARG DRV GL +GADDY+ KPF+ REL AR++A+LRRS + Sbjct: 68 LQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRS--AG 125 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 Q + N + +L + P + A + G+ L LT EF LL LLA H GQV SRE L Sbjct: 126 QVEANV----PIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLL 181 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + G R +D HI NLR KL +G T+ G GY Sbjct: 182 DRIWGPDFQGDARTVDAHIKNLRDKL---GEGAGLILTVWGVGY 222 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 134/239 (56%), Gaps = 29/239 (12%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 +KI++++D+ ++ +LL L+ G++ VA DG++ L L+ + DL+LLD+M+P +G Sbjct: 3 HKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGT 62 Query: 61 DTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 D KA++ + P+IMLTARG E+DR+LG ELGADDY+ KPF+ REL+ RI+ +LRR Sbjct: 63 DVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRR 122 Query: 118 --------SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLA 169 +HW D + TL V DG LT TEF L Sbjct: 123 NVNILPKVAHWQRDGLAADFEAYTLLV--------------DGVDAHLTPTEFNLFGEFV 168 Query: 170 QHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 ++ G+V+SRE L G + R +D H+ LR+KL D W +T+RG GY M Sbjct: 169 RNEGKVLSREQLLSNAWGYEFEGYSRTVDTHVRRLRKKLGPYAD---WLETVRGIGYRM 224 >UniRef50_B8IGE5 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=B8IGE5_METNO Length = 246 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 134/232 (57%), Gaps = 4/232 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 ++ +L+VDDDRE+ L+ L+ G V VA DG Q LD D +D+++LD+M+P +G Sbjct: 4 VDHVLIVDDDREIRELVSGYLKKNGLRVTVAADGRQMRSFLDADRVDIIVLDIMLPGDDG 63 Query: 60 IDTLKALR--QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + + LR + TP+++LTAR E DR++GLE+GADDYL KPF REL+ARI+A+LRR Sbjct: 64 LVLCRELRAGKHKTTPIVLLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRR 123 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLN-PGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 + + L A L+ R G + L+G E+ LL + H +V+ Sbjct: 124 TRMLPPNLQVTEVAQLLTFGAWQLDTTARHLLDATGTVVALSGAEYRLLRVFLDHPQRVL 183 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 SR+ L G+ FDR+ID+ +S LR++L D + KT+R GY+ Sbjct: 184 SRDQLLNLTQGREAELFDRSIDLLVSRLRQRLRDDAREPTYIKTVRSEGYVF 235 >UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCY7_9BURK Length = 248 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 89/231 (38%), Positives = 132/231 (57%), Gaps = 12/231 (5%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQ---ALDLLDDSIDLLLLDVMMPKKNGI 60 +L+VDDD++ +LLK LE + V VAHDG + D + L++LDVM+P +G Sbjct: 14 LLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPDTDGF 73 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 +++R P+IMLTA + DR++GLELGADDY+ KP+N REL+ARI+AI RR Sbjct: 74 TLCRSVRSQSPVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKAIHRR--- 130 Query: 121 SEQQQNNDNGSPT--LEVDALVLN-PGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q G+P L+ ++ R GQ + LT +F LL A+H G+ + Sbjct: 131 ---MQLGAPGAPVRFLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLLRFFAEHAGETLD 187 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 R L ++ G+ L P DR++D+ +S LR++L D KT+RG GY+ Sbjct: 188 RARLMEQTRGRDLGPLDRSLDVQVSRLRQRLHDDGKQPVLIKTVRGSGYVF 238 >UniRef50_A3QF24 Two component transcriptional regulator, winged helix family n=4 Tax=Gammaproteobacteria RepID=A3QF24_SHELP Length = 246 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 137/243 (56%), Gaps = 18/243 (7%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 N IL+VDDD +L +L+ + LEM G+ + H+G +A++ ++ + L++LDVM+P +G+ Sbjct: 5 NWILIVDDDADLANLVADFLEMNGYKTEIEHNGAKAVERIIAEQPMLVILDVMLPDMDGL 64 Query: 61 DTLKALRQTH-------QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRA 113 +A+R H P++MLTA +++D V GLE GADDYL KP R L+AR+RA Sbjct: 65 SICRAVRHGHPGIEGSYNGPILMLTALNNDIDEVAGLETGADDYLAKPVRSRVLLARVRA 124 Query: 114 ILRRS-------HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLY 166 +LRR S+ NN++ +E D L ++ Q GQ +ELT EF LL+ Sbjct: 125 LLRRKPEPPVTEKLSKLHSNNES---LIEFDGLSIDKKYQRIQQHGQDIELTTAEFELLW 181 Query: 167 LLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 LLA G++ R+ +S R ID+ +S +RRKL D KT+ G+GY Sbjct: 182 LLASRPGEICDRDSISDYFSDLGYESSHRTIDLRVSRIRRKLGDDPSHATRIKTIHGKGY 241 Query: 227 LMV 229 L V Sbjct: 242 LFV 244 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 133/231 (57%), Gaps = 8/231 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 KIL+VDD+ + +L+ L + G+ VI A +GE+AL + + L++LDVMMPK +G Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR+ P+IMLTA G DR+ GLE+GADDY+ KPF+ +EL ARIR++LRR+ Sbjct: 67 VCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKI 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 N S + + L ++ +++ + + + LTG EF+LL LL G+ SR + Sbjct: 127 TTNLGVPN-SGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185 Query: 182 SQEVLGKRLTPF----DRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 QEV G TP R +D+HIS LR KL D T RG GYL Sbjct: 186 LQEVWG--YTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_C0QFG8 Two-component DNA-binding response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFG8_DESAH Length = 233 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 88/228 (38%), Positives = 137/228 (60%), Gaps = 11/228 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGID 61 KIL+VDD+R++ L++ L+ EG++ +VA GE+AL + + DL++LD+M+P +G + Sbjct: 5 KILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDGFE 64 Query: 62 TLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + +R T + P++MLTA+G E D V GLE+GA+DY+ KPF+ RELVARIR ILRR Sbjct: 65 VTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRRR 124 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 E+ T+ L ++ GR D L+LT +EF +L+ L G V +R Sbjct: 125 TRVEKPATQ----ATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTR 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + V G+ +R++D+ I+ LR+KL D + +T+RG GY Sbjct: 181 GQIVDAVHGENYAVTERSVDVTIAGLRKKLGPCAD---FIETVRGVGY 225 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 137/240 (57%), Gaps = 16/240 (6%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 + IL+VDDDRE+ LL LE G +A +G Q +L+ S+DL++LD+M+P ++G+ Sbjct: 5 DHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGL 64 Query: 61 DTLKALR--QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + LR + PV+MLTAR E DR++GLE+GADDYL KPF REL ARIR++LRR+ Sbjct: 65 TLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRA 124 Query: 119 HW-------SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQH 171 SE Q G L+ A R G + L+G E+ LL + H Sbjct: 125 RMLPANLQVSEPAQFLVFGDWKLDTTA------RHLLDTQGTMVALSGAEYRLLRVFLDH 178 Query: 172 LGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 +V++R+ L G+ PFDR+ID+ IS LR++L D + KTLR GY+ +A Sbjct: 179 PQRVLTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSAA 238 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/229 (38%), Positives = 143/229 (62%), Gaps = 10/229 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+++DD +++ LL+ L+ EGF+V A+DG++ L++ S D++LLDVM+PK +G++ Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R+T Q P+IMLTA+ D+V+G + GADDY+ KPF++ EL+ARI+A+LRR+ S Sbjct: 64 VCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKKS 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFD-GQTL-ELTGTEFTLLYLLAQHLGQVVSRE 179 + E + L +N E D G+ L +L+ EF LL L + G V+SR+ Sbjct: 124 VVHKG------IFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + +EV G D +D++I LR K+ DR + +T+RG G++ Sbjct: 178 KILEEVWGFDYIGNDNILDLYIKYLRDKI-DRPYERKFIQTVRGIGFIF 225 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 133/230 (57%), Gaps = 1/230 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M+ IL+V+D+ ++ SLL + L G+ + H+G + + + + DL+LLD+M+P K+G Sbjct: 1 MSHILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +++ +IM+TAR E+DR+LGLELGADDY+ KPF+ RE+VAR++ ILRR + Sbjct: 61 LTICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRIN 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 N N + + + LN +A+ + +ELT EF LL +LA G++ SR Sbjct: 121 PPLTTGINTNIAKQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRIYSRS 180 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L V +R ID HI LR+KL + + +++ GY +V Sbjct: 181 QLIDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKLV 230 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 135/230 (58%), Gaps = 10/230 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 N IL+VDDD+++ + L EGF V+ AH+GE+AL ++++ SI L +LD+MMP +GI Sbjct: 19 NSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGI 78 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R+ H P++ L+A+ S++D+V+G GADDY+ KPF+ E +AR++A LRR + Sbjct: 79 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138 Query: 121 SEQQQNNDNGSPTLE----VDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 N N +E + L ++ + G+T+ LT TE+ +LYL+A +V Sbjct: 139 F-----NQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVF 193 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + E + + V +R + + +HI+ LR K+ + + + + G GY Sbjct: 194 TIEEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 243 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 138/228 (60%), Gaps = 5/228 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 +IL+VDD+ + LL L+ G+ V +A DG AL ++ DL+LLD+M+P+ +G++ Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA-DLVLLDIMLPEVDGLEV 60 Query: 63 LKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + L+ QT P+IMLTA+ E+DRVLGLELGADDY+ KPF+ REL+AR++A+LRRS Sbjct: 61 CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRSA 120 Query: 120 WSEQ-QQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ + N +L + L L+ +A +T+ LT E+ LL LL + G+ SR Sbjct: 121 SVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFSR 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + L + + G R +D+HI +LR KL D +T+RG GY Sbjct: 181 DELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGY 228 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 139/228 (60%), Gaps = 10/228 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGID 61 +ILLV+D+ L S LK+LL+ + V VAHDGE DL L DS DL +LD+M+PK +G+D Sbjct: 2 RILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGLD 61 Query: 62 TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 L+A+R+ QTPV++LTA+ + DRV GL+ GADDYL KPF+++EL+AR+RA+ RR+ Sbjct: 62 ILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRT-- 119 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 G +E L+ + + +G+ L LT EF LL L ++ +V+S+E Sbjct: 120 -----GQIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEV 174 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + V G A++ ++ LR+K+ D D + T+RG GY+ Sbjct: 175 ILDRVWGPDADVIGNAVENYVHFLRKKI-DEPDLPSYITTVRGVGYMF 221 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 129/226 (57%), Gaps = 13/226 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS--IDLLLLDVMMPKKNGI 60 K+L+VDD+ + L+K+ L ++V+ A +GEQA+D+ + I L++LDVMMPK +G Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 K +R+ + P+IMLTA+ E D +LG ELG D+Y+ KPF+ + LVAR+ AI+RRS Sbjct: 65 QVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRSI- 123 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 Q D T+E+ +V++ E D +EL+ EF LL + G +SRE Sbjct: 124 ----QTLDE---TMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREK 176 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + V R ID H+ LR K+ D+ D + KT+ G GY Sbjct: 177 ILNNVWNYDYFGDARTIDTHVKKLRSKMGDKGD---YIKTIWGMGY 219 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 143/229 (62%), Gaps = 5/229 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDT 62 IL+VDD+ + +L+ LE + V+ +G A++++ +D +++D+M+P+ +GI+ Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64 Query: 63 LKALRQ-THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R+ Q P+IMLTA+ S++D++LGLELGADDY+ KPF+ +EL++RI+ ILRR + Sbjct: 65 TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRR---T 121 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 ++ N PTL+ + + ++ R + + ++LT EF LL L ++ QV+SR+ + Sbjct: 122 DRAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQI 181 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 ++V G R +D+HIS+LR KL + KT+RG GY VS Sbjct: 182 LEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVS 230 >UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splendidus LGP32 RepID=B7VKB0_VIBSL Length = 244 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/228 (39%), Positives = 136/228 (59%), Gaps = 9/228 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 IL+VDD +++ L E LE F VI A +G + L+ + DL++LD+M+P +G+ Sbjct: 14 ILVVDDSQDILDALSEYLERSSFTVITALEGNEMWKKLEIVTPDLIILDIMLPGDDGLTL 73 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + LR Q P+IMLTA + DR+ GLE+GADDY+ K FN REL+ARI+A+LRRS +S Sbjct: 74 CQKLRLQSQVPIIMLTAVTDDADRIAGLEIGADDYITKSFNPRELLARIKALLRRSTFSH 133 Query: 123 QQQNNDNGSPTLE-VDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 Q G TL+ +D RQ DG+ + L+ ++ LL L+ Q++SR + Sbjct: 134 SQ-----GERTLKFMDWTFDTLKRQLKHEDGEVVSLSSADYNLLTLMLDSPNQLLSRNDI 188 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 +Q + G+ P +R ID+ IS LR++L R D T+R RGY++V Sbjct: 189 AQALWGRDAEPLERGIDVQISRLRKQL--RDDDRNTIMTVRHRGYMLV 234 >UniRef50_Q3K1Z3 DNA-binding response regulator n=9 Tax=Bacteria RepID=Q3K1Z3_STRA1 Length = 234 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 137/230 (59%), Gaps = 9/230 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M +L+V D E LL+ LE + V++A DGE+A L IDL ++D+ +PK +G Sbjct: 1 MRTVLVVQGDDETIELLRSYLEGALYKVVMASDGEEAFSLFQQHQIDLAIIDITLPKIDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +RQ Q P+IML A+ +++DR+LGL +GADD++ KPFN E++ARI + LRR + Sbjct: 61 YELTRLIRQDSQIPIIMLAAKTTDMDRILGLNIGADDFITKPFNSLEVLARINSQLRRYY 120 Query: 120 WSEQQQNNDNGSPT---LEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 + N P +++ L L+ E + +G+ ++LT TEF +L++L G++ Sbjct: 121 -----EFNSLAKPKNQFIKIGELELDEEHVELTKNGKHIKLTATEFKILHILMSSPGRIY 175 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 ++ L +++ G+ L + I +HISN+R K+ D + KTLRG GY Sbjct: 176 TKTQLYEKINGRYLEGDETTIMVHISNIRDKIEDDSKYPKYIKTLRGVGY 225 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 134/224 (59%), Gaps = 4/224 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGIDT 62 IL+ DD+R++ S+L+ LE G+NV+ A DG+QALD LL +D+ LLD+MMP+ +G Sbjct: 5 ILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDGYQV 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 LK LR+T PVI+++A+G + +++LGL LGADDY+ KPFN E VAR+ +RR Sbjct: 65 LKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLKGMA 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 Q + L L L+ + +G+ +ELT E+ ++ + QH G+V +++ + Sbjct: 125 AAQPK-RPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQQIY 183 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + + + ++ + +S LR KL D DG KT+RG GY Sbjct: 184 ECGWDEDYVAAENSVMVCMSRLRSKLGD--DGQEAIKTIRGLGY 225 >UniRef50_B1QW07 Regulatory protein VanR n=6 Tax=Clostridiales RepID=B1QW07_CLOBU Length = 235 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 131/230 (56%), Gaps = 8/230 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 KIL+ DDD E+ +L LL +G+++ A +G++ + L D+S L++LDV MPK +G Sbjct: 9 KILIADDDAEILDILSILLSGDGYDITTASNGDEVVSLADESFSLIVLDVNMPKLSGFLA 68 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR-SHWS 121 +R+ P++ LTAR E D+ +G G DDYL KPF++ E + R++A++RR S + Sbjct: 69 CSEIRKKTMAPILFLTARTQESDKAIGFSAGGDDYLSKPFSNAEFLMRVKALIRRYSQYG 128 Query: 122 E--QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 QQ+N P L V +V+N + S DG + LT TE+ +L LLA + ++ S E Sbjct: 129 SIPTQQSN----PILLVSDMVINTDEKTVSVDGVLIPLTSTEYDILELLALNRKKIFSME 184 Query: 180 HLSQEVLG-KRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 ++ + + D AI +HI NLR+K+ + KT GRGY + Sbjct: 185 NIYSSIWNDSYIGASDNAIMVHIKNLRKKIEKNPKEPKYIKTSWGRGYYI 234 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 95/232 (40%), Positives = 132/232 (56%), Gaps = 13/232 (5%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGI 60 +LL++DD +L L+ E L M + V A + L+ L + SIDL++LD+M+P +G+ Sbjct: 11 VLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDMDGM 70 Query: 61 DTLKALRQTH-----QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 + +RQ QT +IMLTA+G DRVLGLE+GADDY+ KPF REL+ARIRA++ Sbjct: 71 QVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIRAVM 130 Query: 116 RRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQV 175 RR QQ DN L L + P E + D + + LT +F LL+ A H G+V Sbjct: 131 RRHDLPLHQQKEDN----LVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSGKV 186 Query: 176 VSREHLSQEVLGKRLTP-FDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 +SRE L + + DRAID+HIS LR + D T+RG GY Sbjct: 187 LSREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGY 238 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 142/227 (62%), Gaps = 3/227 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 +ILLV+DD ++ LL+ L G V V DG+ L L ++ DL++LD+M+P +G Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D + LRQ TP++M+TA+ E+D+VLGLELGADDY+ KPF+ RE++AR++A+ RR Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ Q + +P +E+ +V+ P +++ + +G+ ++LT EF LL L A+H G+ SR+ Sbjct: 127 VDQETQGQADDTP-IELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRD 185 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L EV G + + + ++ HI+ LR K+ + KT+ G GY Sbjct: 186 ELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGY 232 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 139/241 (57%), Gaps = 25/241 (10%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 IL+ DDD+++ LL+ LE EG+ V A DG +AL + IDL+LLD+MMP+ +G Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ +R+T PVIM++A+G + D+++GL+LGADDYL KPFN E +AR+R+ LRR++ Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 123 QQQNNDNGSP---------------TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYL 167 + D+ S TL++DA VL+ G + L+LT EF +L L Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRG-------DEPLDLTPVEFRMLSL 183 Query: 168 LAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 H G+V +++ + +E G+ + + IS LR KL D D + T+RG GY Sbjct: 184 FMSHPGRVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSD--DPGAYIATVRGLGYR 241 Query: 228 M 228 M Sbjct: 242 M 242 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 129/230 (56%), Gaps = 2/230 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M +LLVDDD ++ SLL + V +A +G L+ ++IDL++LDVM+ ++G Sbjct: 1 MPHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +R + PVIMLTA DRV+GLE+GADDYL KPF+ REL+AR++A+LRR+ Sbjct: 61 FSLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTA 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQE-ASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 E P L L+ R+E S D + L+G EF LL A+H +V++R Sbjct: 121 ELEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQRVLTR 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + L G FDR+ID+ +S LR KL D +T+R GY+ Sbjct: 181 DQLLDLARGLSHAAFDRSIDVQVSRLRHKLEDDPKKPSVIRTVRNGGYIF 230 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 136/227 (59%), Gaps = 8/227 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 K+L+ DDD + +++ E + +I A DG +AL++++ + D+++LDVMMP+ +G + Sbjct: 34 KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ TP+IMLTA+ E DRVLGLELGADDY+ KPF+ RE+VARIRAI+RR Sbjct: 94 ACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ-P 152 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + ++ T + L ++ ++E G+ + EF LL L + G V SRE L Sbjct: 153 KPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQL 212 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPW--FKTLRGRGY 226 ++V G R ID+HI +R++L D P+ +T+ G GY Sbjct: 213 LEQVWGFDYFGDVRTIDVHIKKIRQRL----DKLPYDCIQTVWGIGY 255 >UniRef50_Q212W6 Two component transcriptional regulator, winged helix family n=17 Tax=Alphaproteobacteria RepID=Q212W6_RHOPB Length = 270 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 98/230 (42%), Positives = 134/230 (58%), Gaps = 8/230 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHD-GEQALDLLDDSIDLLLLDVMMPKKNGID 61 +IL+VDDD E+ LL +E + F V++A E L + IDL++LDVM+P +G+D Sbjct: 36 QILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRQRLATEQIDLVVLDVMLPDGSGLD 95 Query: 62 TLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR + + P+I+LTA ++DR+LGLE+GADDYL KPFN RELVARIRA+LRR Sbjct: 96 ACRDLRAKRNPIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVLRRRSE 155 Query: 121 SEQQQNNDNGSPTLEVDALVLNPG-RQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + S + V +P R G +ELTG EF LL + G+V+SR+ Sbjct: 156 TPAPV---GASRAYRFEGFVADPQVRSVVDPTGTAIELTGAEFDLLQVFLDRPGRVLSRD 212 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L G+ T FDR+ID+ IS +RRKL D KT+R GY V Sbjct: 213 QLLDFTRGRSDT-FDRSIDVLISRVRRKL-DPSGTARLLKTVRNGGYQFV 260 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 135/233 (57%), Gaps = 11/233 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNG 59 M IL+V+DD+E+ L++E LE E F IV +DGE L + + + DL++LD+M+PK +G Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 60 IDTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 ++ +RQ + ++MLTA+G E+DR++GL GADDYL KPF+ RELVAR+RA+LR Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDG---QTLELTGTEFTLLYLLAQHLG 173 R Q + +VD Q + + G + LELTG EF LL + G Sbjct: 131 RQLRQGQPVGQIYRTNHFQVDL----DQHQASRYQGDRQEELELTGLEFNLLATFMSYPG 186 Query: 174 QVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 +V +R L +++ G +R +D HI LR+K+ + KT+ G GY Sbjct: 187 RVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGY 239 >UniRef50_A8FS20 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Shewanella sediminis HAW-EB3 RepID=A8FS20_SHESH Length = 232 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 131/226 (57%), Gaps = 3/226 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDG-EQALDLLDDSIDLLLLDVMMPKKNGIDT 62 +LL+DDD EL L+++ L + V V +DG A ++L + +++LD+M+P +G+ Sbjct: 7 VLLIDDDIELCELVRDYLIQNDYRVSVLNDGLNAAKEILSQNPHIVILDLMLPHVDGLTI 66 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 K +R+ + +IMLTA ++D V GLE+GADDYL KP R L+A IRA LR H + Sbjct: 67 CKQVREDYHGSIIMLTALDDDIDEVTGLEVGADDYLAKPVKPRVLLAHIRAQLR--HLEK 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 ++ + S VLNP + S D Q +ELTG E+ +L LA H G++VSR+ L Sbjct: 125 HKKRQEMESIQFGNQCFVLNPANRTLSVDHQPIELTGAEYDVLLQLAIHCGEIVSRDALH 184 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + +R+ID+ IS LR KL + +T+R +GYL+ Sbjct: 185 KTIFNFEYDGIERSIDLRISRLRNKLNQHAESGNIIQTVRNKGYLL 230 >UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria RepID=Q0K0A7_RALEH Length = 247 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/231 (39%), Positives = 131/231 (56%), Gaps = 4/231 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 + IL+VDDDRE+ L+ L G V V DG LD +S+DL++LDVMMP +G+ Sbjct: 6 DHILIVDDDREIRELVSTYLTKNGLRVTVVPDGRHMRSFLDVNSVDLIVLDVMMPGDDGL 65 Query: 61 DTLKALR--QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + LR + TPV+MLTAR E DR++GLE+GADDYL KPF REL+ARI+A+LRR+ Sbjct: 66 VLCRELRAGKHKATPVLMLTARSDETDRIIGLEMGADDYLAKPFAARELLARIKAVLRRT 125 Query: 119 HW-SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q + G D + R DG + L+G E+ LL + H +V++ Sbjct: 126 RMLPPNLQITEAGQLLAFGDWQLDTTARHLIDQDGVIVALSGAEYRLLRVFVDHPQRVLN 185 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 R+ L G+ F+R+ID+ +S LR+ L D + KT+R GY+ Sbjct: 186 RDQLLSLTQGREAEMFERSIDLLVSRLRQHLRDDAREPRYIKTVRSEGYVF 236 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 80/227 (35%), Positives = 137/227 (60%), Gaps = 2/227 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M ++L+ DD+ E+ LL LE +G + A +G +AL +++++ +D+ ++D+MMP+ +G Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ +R+ + PVIML+A+ D++LGL+LGADDY+ KPFN E++AR++A LRR + Sbjct: 61 YHLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S ++ LE L LN + + LT TE+ +L+ L ++ G+V +++ Sbjct: 121 KSMSEKEKCE-KQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKK 179 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + + V + D AI +HISNLR K+ D + KT+RG GY Sbjct: 180 QIFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGY 226 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 144/231 (62%), Gaps = 14/231 (6%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 KIL+VDD++++ LL+ LE +G+ V A GE+AL++ L DL++LD+M+P +G+ Sbjct: 4 EKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDGL 63 Query: 61 DTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + +A+R + TP++ML+A+G E D + GLELGADDY+ KPF+ + L+ARIR++LRR Sbjct: 64 EVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRR 123 Query: 118 SHWSEQQQNNDNGSP--TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQV 175 QQ P T+ V + ++P + +G+ ++LT +EF +L LA G V Sbjct: 124 -----QQAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLV 178 Query: 176 VSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 +R + ++ G+ DR++D+ IS LR+KL D + + +T+RG GY Sbjct: 179 FTRWQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYGE---YIETVRGVGY 226 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 138/227 (60%), Gaps = 7/227 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD--SIDLLLLDVMMPKKNGI 60 KIL+VDDD+E+ LL+ EG+ + A++G+ A+ L+ I L++LD+MMP+ NG+ Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNGM 61 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D ++ +R+ P+++L+A+ +++D++ GL GADDY+ KPFN E++AR++++LRR Sbjct: 62 DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRR--- 118 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEA-SFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 SE Q ND L V LV+N E + G ++LT EF +LYLLA H +V S + Sbjct: 119 SENQVTNDKPD-VLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSAD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + + V + + + +H+S+LR K+ G +T+ G GY Sbjct: 178 DIFERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGY 224 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 139/234 (59%), Gaps = 9/234 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL----DDSIDLLLLDVMMPK 56 M +IL+VDD+ + ++L+ LE EGF V A DG AL L + +DL+LLDVMMP Sbjct: 1 MTRILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPG 60 Query: 57 KNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +G++ L+ LR T VI++TAR E+D+++GL +GADDY+ KPF+ RE+ AR++++LR Sbjct: 61 MDGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 R ++ P L D L ++P +E + DG + LT EF LL+ L + G+V Sbjct: 121 R-----RRDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVF 175 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 SR L ++V G +R +D+HI NLR +L D T+RG GY + Sbjct: 176 SRAQLLEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFIG 229 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/235 (38%), Positives = 133/235 (56%), Gaps = 13/235 (5%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKKNGID 61 IL+VDD+ E+ LL+++LE EGF+V A GE AL LL + +L+LLD+MMP +G + Sbjct: 5 ILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNMSGYE 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR----- 116 +R+ P++ L+A+G +D+V+G E+GADDY+ KPF+ EL+ARIRA LR Sbjct: 65 LCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRRYERI 124 Query: 117 RSHWSEQQQNNDNGSP--TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 R H EQ + SP L+ L ++ Q +EL+ EF LL LA++ G Sbjct: 125 RKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAENAGI 184 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 V +RE + V G + + +HI NLR KL + + KT G GY+ + Sbjct: 185 VFTREQIYDRVWGYGYGSLN-TVTVHIKNLREKLETERQ---FIKTQWGTGYVFI 235 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 139/226 (61%), Gaps = 7/226 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGID 61 +ILL +DD L L + L+ EG+ V DG+ AL + + S DL+LLDVM+P+++G D Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 K LR++ P++MLTARG +D+V+GL+ GADDYL KPF EL+ARI A+LRR Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRR--- 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + +++ + G T ++ + ++ R E + G+ + L+ E+ LL L H G+ V+RE Sbjct: 121 APVRRSLNAG--TFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTRED 178 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L +V G T R +D+H++ LR+KL + + +T+RG GY Sbjct: 179 LLTQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGY 224 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 IL+V+D +L +L L G+ V A DG AL L DL++LD M+P+ +G++ Sbjct: 8 ILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGLEV 67 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ +RQT TPV+MLTAR E D V+GLELGADDYL KPF REL+AR+RA+LRR + Sbjct: 68 LRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQRIQ 127 Query: 123 Q--QQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 Q Q + + L LVL+P + Q L+LT TEF +L LL ++ G+ SR + Sbjct: 128 QLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSRNY 187 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L + G+ DR++D + LR+KL D D +T+ G GY Sbjct: 188 LLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGY 230 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 137/227 (60%), Gaps = 7/227 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 KILLVDDD L + LL EG+ V+ A DG +AL+ LD + DL++LD+MMP+ +G Sbjct: 3 EKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSGF 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LK +R+ PVI+LTA+ +D+V+GLELGADDY+ KPF+ +EL+ARI+AILRR Sbjct: 63 EVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRRLGR 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 E + + L + L ++ + DG+ L+LT TEF +L LL + GQ +R Sbjct: 123 REGGRRDG----VLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRAQ 178 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHP-WFKTLRGRGY 226 +S+ V R ID+HIS LR K+ +R P +T+ GY Sbjct: 179 ISEAVSTGSHYLASRYIDVHISRLRSKI-ERDPSRPEIIQTVPSVGY 224 >UniRef50_A1RJP8 Two component transcriptional regulator, winged helix family n=19 Tax=Shewanella RepID=A1RJP8_SHESW Length = 236 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 133/227 (58%), Gaps = 6/227 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNG 59 M+KILLVDDD + L + L G V A +G L+ + D+++LD++MP+ NG Sbjct: 11 MSKILLVDDDPLFRTWLADALIAHGHEVECATNGLDGLNRIRAGFADVIMLDLVMPQMNG 70 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LKA + TPV+ML+AR SE DR++G ELGADD+L KPF+ +EL+ R+ A+ RR H Sbjct: 71 FEVLKA--RECSTPVMMLSARDSEDDRIMGYELGADDFLSKPFSIKELIVRLGALERRLH 128 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q+ S +V ++ + + + ++LT TEF L L + GQV++++ Sbjct: 129 SHRIMQHKTEHS---QVKSVNFDETSYRITIGNRGVDLTQTEFRLFKYLFERKGQVITKQ 185 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L + VL K L FDR +DMHISN RRKL T+RG+GY Sbjct: 186 ELQRSVLQKDLGRFDRNLDMHISNTRRKLAKTSLPRNLINTVRGQGY 232 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 135/228 (59%), Gaps = 6/228 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 + KIL+ DD+ + + L+ + I A+DG++AL+ + + DL++LD+MMPK G Sbjct: 4 IKKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K +R+ P+IMLTA+G E+DR++GLE+GADDY+ KPF+ RE+V RI+ I RR Sbjct: 64 TEVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVG 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + N + T + ++ + E + + +++T E +LYLLA + G+V+SRE Sbjct: 124 NANIDTNLNRKLVTF--NNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSRE 181 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPW-FKTLRGRGY 226 + +V G R +D I +R+K+P+ +G W KT+ G GY Sbjct: 182 EILDKVWGYDYFGDTRVVDTQIKRIRKKIPE--EGEKWSIKTVYGIGY 227 >UniRef50_B6R185 Response regulator in two-component regulatory system with EnvZ, OmpR family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R185_9RHOB Length = 239 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 135/227 (59%), Gaps = 4/227 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 +L+VDDD E+ SL + L+ G+ V A+ E+A++LLD + IDL++LD+M+P +NG+ Sbjct: 8 LLIVDDDEEIASLTADFLKDRGYTVFTANSAEEAMELLDTNHIDLMVLDIMLPGENGLTL 67 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +RQT + P+I+++A + +R++GLELGADDYL KPFN REL ARI AI RR+ E Sbjct: 68 CQRVRQTSKMPIIIISAITGDTERIVGLELGADDYLEKPFNPRELQARIFAIFRRTEDVE 127 Query: 123 QQQNNDNGSPTLEVDALVLNPG-RQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + E L+ R + DG + L+ +EF L + + +SR+ L Sbjct: 128 TAAA--PKAQRFEFSGWKLDEATRHLTAPDGVLVHLSSSEFDALLTFVKSPQKPISRDTL 185 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + G ++ DR+ID+ IS LR+KL + T+R +GYL Sbjct: 186 GRVLRGAKVDSHDRSIDILISRLRKKLAQTDPNTDFITTVRHQGYLF 232 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 129/226 (57%), Gaps = 4/226 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 ++L+VDD++ L ++ L GF+ AH G QA+D S D+++LD+ +P+ +G+ Sbjct: 41 GRVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGL 100 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R ++MLTARGSE D++ GL LGADDY+ KPF+ RELV R+ A+LRR Sbjct: 101 EVCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 S L V L+L+P + T+ELT TEF LL LA GQV++R Sbjct: 161 STTPPQVTT---PLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHD 217 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L EV +R +D+HI NLRRKL G + T+RG GY Sbjct: 218 LVTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263 >UniRef50_Q1IY67 Two component transcriptional regulator, winged helix family n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IY67_DEIGD Length = 227 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 129/224 (57%), Gaps = 8/224 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDT 62 IL+V+D+ +L +L+ EG+ A DG AL + DL+LLDVM+P ++G+D Sbjct: 5 ILIVEDEPQLAEVLEAYARQEGYRTERAGDGLAALTAYRAAQPDLILLDVMLPGRSGLDV 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 LK +R TPVI++TAR E D+++GLELGADDY+ KPF RE++AR++A+LRR+H + Sbjct: 65 LKTVRADGPTPVILVTARAEETDQIVGLELGADDYVVKPFRPREVMARVKAVLRRAHAAL 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 + LEVD A +GQ L LT EF LL LAQ G+ +RE L Sbjct: 125 EGTERPLRVGPLEVDRRAAR-----ARVNGQPLGLTPAEFRLLAYLAQVPGRACTREELL 179 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L +R +D H++++RRKL D T+RG GY Sbjct: 180 AAALPDS-DALERVVDAHLASVRRKL-DAAQAGELLHTVRGVGY 221 >UniRef50_A4CEI9 Transcriptional regulatory protein RstA n=3 Tax=Gammaproteobacteria RepID=A4CEI9_9GAMM Length = 245 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 136/234 (58%), Gaps = 5/234 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 ILLV+DD L +KE LEM+ + V V G+ A+ ++ + + DL++LD M+P +GID Sbjct: 11 ILLVEDDISLADWIKEYLEMKHYQVTVQERGDLAVQIIQEQNPDLVILDGMLPGLDGIDV 70 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 LKA+R +IM+TAR ELD VLGLE+GADDYL KP L +IR L R + Sbjct: 71 LKAVRPAFANTIIMVTARDEELDEVLGLEMGADDYLTKPLRANVLSTKIRKHLERQTIMK 130 Query: 123 QQQNNDN----GSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + Q+ ++ S + + ++ + + + ++++ EF LL+LLA+ G V+R Sbjct: 131 RSQDIESEVGRSSDSFQYGDFSIDKQARSVELNNKIVDISSNEFDLLWLLAERAGNTVTR 190 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + L Q + G FDR +D+ +S LR+KL D KT+ G+GYL+V ++ Sbjct: 191 DELIQALRGFDYDGFDRTVDLIVSKLRKKLNDNPSKPYRIKTVWGKGYLLVKSA 244 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 94/230 (40%), Positives = 130/230 (56%), Gaps = 13/230 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M KILL++DD +L SLLK LE EGF++ H G+ A++L DL+LLD+M+P +G Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDG 65 Query: 60 IDTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +D K +R+ PVI LTAR SE DR++GLELGA+DY+ KPF REL+ARI+ Sbjct: 66 LDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKL--- 122 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 Q +N + LE + L+ + +G L LT TEF LL L G V Sbjct: 123 ------QFRNQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVF 176 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 SRE L V G+ DRA+D+++ LR+K+ ++RG GY Sbjct: 177 SREQLLNAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGY 226 >UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCX3_9FIRM Length = 228 Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 141/235 (60%), Gaps = 15/235 (6%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M ++L+V+DD + LLK L + ++ +G+ A D L D+ +DL +LD+M+P NG Sbjct: 1 MERVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNG 60 Query: 60 IDTLKALRQT---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 D LK +R PVI+L+A+ ELD+++GL+LGADDYL KPF+ EL ARIR++LR Sbjct: 61 YDILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 RS E+ +++ L ++ ++ + + +ELT EF LL LA++ G+ V Sbjct: 121 RSKKDER---------LIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAV 171 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 SRE L ++ G R +D+HI++LR+KL + + W +++R GY +VS Sbjct: 172 SREELINQIWGYDFIGESRTLDVHINSLRKKLGN--EYAHWIQSVRQVGYRLVSG 224 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 149 bits (376), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M +L+V+D+ L L LL EGF V DG AL D + D++LLD+M+P +G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K LR PVIM+TAR SE+D+V+GLELGADDY+ KP++ REL+ARIRA+LRR Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGG 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + ++ LE + ++ R S +G T+ L EF LL L ++ G+V++R Sbjct: 121 DDDSEMSDG----VLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRG 176 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L V G + +D+H+ LR K+ T+RG GY Sbjct: 177 QLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGY 223 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 149 bits (376), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 6/230 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNG 59 M I++VDD++ L + L+ +G+ I+A DGE+AL L+ D++ DL+LLD+ MP +G Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ + +R PVI L+ R S +D+V ELGADDY+ KPF+ EL ARI+A +R Sbjct: 61 LEVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRM-- 118 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 N + P L LV++P + +G+++ LT E LL A+H QV + E Sbjct: 119 ---YAMNPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHE 175 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L + T + + +HIS+LRRK+ + + +T+RG GY V Sbjct: 176 QLYDRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFV 225 >UniRef50_B6JIF2 DNA-binding response regulator OmpR n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JIF2_OLICO Length = 241 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 131/230 (56%), Gaps = 3/230 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPK-KNGI 60 +IL+VDDD L + + L EG+ A DG L + DL++LD+ P ++GI Sbjct: 5 RILMVDDDPRLCGFVSKFLTREGYATEFAFDGNAMQRALANVPFDLIILDLSFPNGEDGI 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R + TP++ML+ R +D+++ LE+GADDYL KPF REL+ARIR +LRR+ Sbjct: 65 TLARDIRTRYDTPLVMLSGRHETVDKIICLEIGADDYLTKPFEPRELLARIRTVLRRARP 124 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQE-ASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + Q+ + L+ GR+E S D + + LT EF LL L Q G+V++R+ Sbjct: 125 TPQRSAAPAEKDIILFAGWRLDLGRRELFSPDDEAVVLTSQEFHLLAALVQRAGRVLTRD 184 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + + + TPFDR+ID+ I LRRKL D + KT+RG GY+ Sbjct: 185 QILDLIANRHWTPFDRSIDVLIGKLRRKLNDNNRANQIIKTVRGAGYVFT 234 >UniRef50_B7IXR9 DNA-binding response regulator n=167 Tax=Bacilli RepID=B7IXR9_BACC2 Length = 225 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 132/230 (57%), Gaps = 16/230 (6%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQA-LDLLDDSIDLLLLDVMMPKKNG 59 M ILLVDD+ + LL L G+N + A GE+A L + + + +LLD+MMPK +G Sbjct: 1 MIDILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +T K +R P+IM+TAR +D + GL+LGADDY+ KPF++ EL ARI A+LRR+ Sbjct: 61 WETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRT- 119 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 +E +Q ++ +V + + AS + L LT EF+LL L +H+ V+SR+ Sbjct: 120 -NEHKQ--------IQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRD 170 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHP---WFKTLRGRGY 226 L + + G DR +D HI NLR KL RK P KT+ G GY Sbjct: 171 QLIERIWGLNTNTEDRTVDSHIRNLRDKL--RKANFPIDHHLKTVYGVGY 218 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 138/230 (60%), Gaps = 6/230 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 M I LV+DD L+ L+ L+ F+V V G+ LD DL++LD+M+P +G Sbjct: 47 MPNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDG 106 Query: 60 IDTLKALRQTHQT-PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + + LRQ QT P++MLTAR D+VLGLE+GADDY+ KP R L+AR+R +LRRS Sbjct: 107 LQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS 166 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +E + +ND + + L ++ + S+ G+ +EL+ E+ LL +LA++ G+V++R Sbjct: 167 SVNEPRLDND----LILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNR 222 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + Q++ G DR++D+ IS LRRK D KT+ G+GYL Sbjct: 223 DRILQQLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 272 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 139/230 (60%), Gaps = 11/230 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 M I +++DD ++ LL + EGF+V +G+ A + + + D+++LD+MMP+ +G Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDG 60 Query: 60 IDTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 ++ K +R + P+IMLTA+ +E+D+++GLELGADDY+ KPF+ REL+AR++A+LR Sbjct: 61 LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 RS + + P + L ++P + E + GQ + LT T+F LL L G+V+ Sbjct: 121 RS----KSLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVL 176 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 SR+++ + V +DR ID+HI LR L K+ KT+RG GY Sbjct: 177 SRDYIIEHVWAWDKDVYDRTIDVHIKKLRELL---KEYGNCIKTIRGVGY 223 >UniRef50_A9AXY0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXY0_HERA2 Length = 225 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/210 (39%), Positives = 122/210 (58%), Gaps = 8/210 (3%) Query: 21 LEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDTLKALRQTHQTPVIMLTA 79 LE GF +A DG L L+ L++LD+M+PK +G+ K +RQT TP+IM+TA Sbjct: 22 LEQAGFTTYLASDGLAGLALVQQHQPSLVVLDLMLPKLDGLAVFKTIRQTSNTPIIMVTA 81 Query: 80 RGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDAL 139 R S+ +R+ GLELGADDY+ KPFN RELVAR+RA+LRRS + Q G L+++ Sbjct: 82 RSSDEERIHGLELGADDYVGKPFNARELVARVRAVLRRSQPIQASQMLKRGPIELDLE-- 139 Query: 140 VLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDM 199 + + + Q +EL+ + LL +H Q++SRE L + V FDR++D Sbjct: 140 -----QHSCTVNQQPVELSKIQLALLATFMRHPNQILSREQLLEAVFAGDYAGFDRSLDA 194 Query: 200 HISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 HI+ LR+++ + + T+ G GY V Sbjct: 195 HIARLRQRIEHDRTNPQYIVTVYGLGYKFV 224 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 127/227 (55%), Gaps = 2/227 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNG 59 M KIL+V+D+ + + K LE E + V A +G + D+ L DL++LD+MMPKK+G Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +RQ P+IMLTA+G E DR+LGL +GADDYL KPF+ RELV R++ ILRR + Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q ++ S +E L + P + +ELT EF +LY++A+H QV SR Sbjct: 121 -QVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRS 179 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L + + + + +S LR KL + W T+ G GY Sbjct: 180 QLLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGY 226 >UniRef50_Q1GLX1 Two component transcriptional regulator, winged helix family n=1 Tax=Ruegeria sp. TM1040 RepID=Q1GLX1_SILST Length = 238 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 136/230 (59%), Gaps = 3/230 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 +IL+ DD+ L +L E L G+ V+ A + + L + DD+ D+++LD+ MP +G+ Sbjct: 8 KRILVCDDEHHLREMLSEYLCERGYEVMEAENADAMLAVFNDDTPDVVVLDINMPGTDGL 67 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 L+ LR PVIML+A G +DR++GLE+GADDYL KP + REL ARI+A LRR + Sbjct: 68 TALRTLRVNSTIPVIMLSAAGEVVDRIVGLEMGADDYLAKPVDLRELEARIKAALRRQGF 127 Query: 121 S-EQQQNNDNGSPTLEVDALVLN-PGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + E+ D + T+ L+ G + G+ + +T EF+LL + AQ+ G+V++R Sbjct: 128 AGEESAQRDRMTGTVPFGMCRLDLDGAKLFGESGEEIAITSMEFSLLRVFAQNRGRVLNR 187 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + L ++ + FDR+ID+ IS LRRK+ +T+RG GY+ Sbjct: 188 DQLLEQAHDRGWEHFDRSIDLRISRLRRKIEQNPTKPETIRTVRGIGYIF 237 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 137/226 (60%), Gaps = 5/226 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 IL+VDD++ + L++ L+ EGF + +++G+ A ++ + ++L +LDVM+P +G Sbjct: 5 ILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGFTL 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR-SHWS 121 + +R+ H PVIMLTA+ E+D++ GL LGADDY+ KPF ELVAR++A LRR + ++ Sbjct: 65 CQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTKYN 124 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + N + + L+L+ E + + + + LT EF++L++L + G+VVS E L Sbjct: 125 SVEPNQEEH--LIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEEL 182 Query: 182 SQEVLG-KRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 EV G K T + + +HI +LR K+ + + KT+ G GY Sbjct: 183 FHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGY 228 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 134/229 (58%), Gaps = 13/229 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KIL+++DD ++ L+ L+MEGF DG L L D +LLD+M+P +G+ Sbjct: 3 KKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGL 62 Query: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + ++Q TPV+++TA+G E DRV+GLE+GADDY+ KPF+ +E+VAR++A+LRR Sbjct: 63 TVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRR 122 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 E QQ + + + + ++ GR EA+F+G LT EF LL L + G+V+ Sbjct: 123 ---RETQQRL---TERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLD 176 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 RE L V G DR +D+HI LR+K+ + W +T++ GY Sbjct: 177 RETLLNTVWGDDYEGTDRTVDVHIRRLRKKM---GESAAWVETVKQIGY 222 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 10/224 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 IL+VDDD + L+ LE EGF A DG AL +++ +D+++LD+MMP +G D Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 LR+ + P++MLTA+G +V G LG DDYL KPF+ ELV R++A+L+R + Sbjct: 94 CFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITV 153 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 Q +++V ++LN E + QT+ L EF LL+ L G+ SRE L Sbjct: 154 SQ--------SIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLI 205 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 ++V G +R +D+HI+ LR K + K KT+RG GY Sbjct: 206 EDVWGYDFEGNERTLDVHINRLREKFQEEKSKFS-IKTIRGLGY 248 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 133/232 (57%), Gaps = 5/232 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 IL+VDDD E+ +LL L+ GF A DG + +L+ DL++LDVM+P +G+ Sbjct: 7 ILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGDDGLTL 66 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + LR + PVIMLTA + DR++GLELGADDY+ KPFN RELVARIR +LRR+ Sbjct: 67 CRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRARALP 126 Query: 123 Q---QQNNDNGSPTLEVDALVLNP-GRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + + + S T+ L+ R + DG + L+G E+ LL ++ +V+SR Sbjct: 127 ENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRVMSR 186 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + L G+ FDR+ID+ +S LR +L D KT+RG GY + + Sbjct: 187 DQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLAT 238 >UniRef50_C2Z9H3 DNA-binding response regulator n=4 Tax=Bacillaceae RepID=C2Z9H3_BACCE Length = 226 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 132/223 (59%), Gaps = 6/223 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDTL 63 IL+VDD+ E+ +L ++ + V+ A++GEQALD L +DL++LD+MMPK +G + Sbjct: 5 ILVVDDESEIVDVLSDIFSDRDYKVLKAYNGEQALDHLKTQVDLVILDIMMPKMDGFEFC 64 Query: 64 KALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQ 123 K +R+ + P++ L+A+ SE+D+V G LG DDY+ KPF +EL+AR+ A LRR + Sbjct: 65 KVVREQIKCPILFLSAKHSEIDKVKGFTLGGDDYITKPFQVKELIARVEAHLRR-----E 119 Query: 124 QQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQ 183 ++ N + L +N + + DG +++T EF +L LL +LGQ+ S+E + + Sbjct: 120 KRERVNLQNQRFLGNLTINYSQHDVFIDGVKIDVTSKEFKILELLTVNLGQIFSKEQIYE 179 Query: 184 EVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 ++ G I +HI+NLR KL + KT+ G GY Sbjct: 180 KIWGLDAVGDLNTIIVHINNLRAKLSLGMSTYH-IKTVWGVGY 221 >UniRef50_A9DQD6 Probable two-component response regulator protein n=2 Tax=Rhodobacteraceae RepID=A9DQD6_9RHOB Length = 247 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 138/239 (57%), Gaps = 9/239 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 KIL+VDDD + +LL+ LE +G+ V+ A + D + DL+ LD+ + NG+ Sbjct: 4 KKILVVDDDVRIRTLLRRCLEGDGYRVVEAESAQSVRDAFGAAAFDLVTLDLNLGADNGL 63 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D L+ LR+TH P++M+T + +DRV+GLELGADDYL KPF+ RE++AR+R++LRRS Sbjct: 64 DILRELRRTHDVPIVMVTGKDDVIDRVVGLELGADDYLTKPFHVREVLARVRSVLRRSSR 123 Query: 121 SEQQQNNDNGS-----PTLEVDALVLNPGRQ-EASFDGQTLELTGTEFTLLYLLAQHLGQ 174 + D S P L +D L + R G+ +LT +F LL ++ + Sbjct: 124 PMPAETTDRDSDTSDAPWLSLDGLKIRLDRMLLVDRQGEDCDLTTADFKLLAAFLKNAKK 183 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHP-WFKTLRGRGYLMVSAS 232 +SR+ L + G+ P DR ID ++ LR+K+ +R P KT+RG GY++ ++ Sbjct: 184 PLSRDRLMDLIDGQEWAPLDRTIDNQVARLRKKV-ERDASRPLLIKTVRGIGYILTESA 241 >UniRef50_B0S1J7 Two-component response regulator n=16 Tax=Clostridia RepID=B0S1J7_FINM2 Length = 239 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 138/232 (59%), Gaps = 18/232 (7%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 KIL+V+D++ +++ K+ LE+EGF V A DG++A+D+++ + +++LD+M+PK +G Sbjct: 10 KILIVEDEKNISNAEKKYLEVEGFRVEQAFDGQEAIDMINSTDYSMIILDLMLPKISGEK 69 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 ++ +R +TPVIM+TA+ E + + GL+LGADDY+ KPF+ + LV +++ ILRR Sbjct: 70 VMEVIRSRTETPVIMVTAKIDEDEILEGLKLGADDYITKPFSLKILVQKVKTILRRVEKL 129 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASF-------DGQTLELTGTEFTLLYLLAQHLGQ 174 G P + D + + GR SF DG+++ LT EF ++ L + + Sbjct: 130 --------GLP--KSDKIYFDNGRVSISFDDNTFIKDGESISLTSNEFQIIKTLFSNPNK 179 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + +R+ + + G FDRAID HI N+R K+ D + KT+ G GY Sbjct: 180 IFTRDEIIELSFGYDYEAFDRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGY 231 >UniRef50_B1C9A4 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9A4_9FIRM Length = 226 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 135/229 (58%), Gaps = 12/229 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGE-QALDLLDDSIDLLLLDVMMPKKNGI 60 N I +V+DD ++ LLK LE + V V + E + L ++ L+LLD+M+P +GI Sbjct: 3 NYIYVVEDDNNISELLKCSLEAFNYYVKVFENCEDMMIALKEEKPKLMLLDIMLPGMSGI 62 Query: 61 DTLKALRQTHQ---TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 D LK L+ +++ P+I+L+A+ SE+D+V LELGADDY+ KPF+ EL +RI+++LRR Sbjct: 63 DALKLLKNSNKYKSIPIIILSAKSSEIDKVNALELGADDYVTKPFSVLELSSRIKSVLRR 122 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 S+ E DN L + ++ S DG+ + LT E+ +L + ++ G+VV+ Sbjct: 123 SYKVE-----DN---ILNYKDITIDKENYLVSHDGEEVILTKKEYKILLYMLENKGRVVT 174 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 RE L EV G R +DMH+ LR K+ D + + KT+RG GY Sbjct: 175 REELLNEVWGYDFEGESRTLDMHMKTLRNKIGSEDDKYKYIKTIRGIGY 223 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 137/228 (60%), Gaps = 12/228 (5%) Query: 1 MNK-ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKN 58 MNK +L+V+D+ + L+++ + EGFNV+ A DGE+AL + ++I DL +LD+MMPK + Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G+ + +R+ TP+I+LTA+ E D++LG ELGADDY+ KPF+ + L+A+ +A+LRR+ Sbjct: 61 GLAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 N L+ + L +N E +G+ L L+ E+ LL L+ + G +SR Sbjct: 121 -------GTLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSR 173 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + + V G R +D +I LR KL D+ + + T+RG GY Sbjct: 174 DRILDNVWGYDYFGDIRTVDTNIKRLREKLLDKAN---YIATVRGSGY 218 >UniRef50_D0LHP7 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHP7_HALO1 Length = 227 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 6/225 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 +IL+ DD+ + +++ LE +G+ V A DG+ AL ++ IDL++LDV+MP+ +G++ Sbjct: 5 RILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPELDGLN 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR+ P+I L++R E DR+LGLELG DDY+ KPF+ REL R++A+LRR Sbjct: 65 LCRKLRERGDVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRR---V 121 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 ++ D+ P L + L L+P E D + LT TEF +L+ + + G+V++R L Sbjct: 122 AARRGADDAPPALVYERLTLDPAAHELRVDDDKIALTVTEFRVLHAILERPGRVLTRSQL 181 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L +R ID HI +R KL R G +T+ G GY Sbjct: 182 IDRAYEDGLHVSERTIDTHIRRIRAKL--RPYGIEAIETVHGLGY 224 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/231 (36%), Positives = 138/231 (59%), Gaps = 12/231 (5%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 IL+ +DD ++ L+ L EG+ ++ A DG +A+ L+ ++IDL++LD+MMP +G + Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67 Query: 63 LKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 ++ +R Q ++ P+I L+A+ S+ D++ GL +GADDY+ KPFN EL+AR+ A LRR Sbjct: 68 VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRF--- 124 Query: 122 EQQQNNDNGSPTLEVDALV-----LNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 +Q N +PT A+V ++ ++ + ++LT EF +LYLLA H +V Sbjct: 125 -RQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVF 183 Query: 177 SREHLSQEVLGKRLT-PFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 S EH+ Q+V G+ + +HI LR+KL + K W KT+ G GY Sbjct: 184 SAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGY 234 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/227 (32%), Positives = 133/227 (58%), Gaps = 1/227 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M +L++DD+ E+ L++ L EG+ V A++G ++++ ++ I +++LDVMMP +G Sbjct: 1 MFNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +R+ + P+IML+A+ ++D++ GL GADDY+ KPFN EL+AR+++ +RR Sbjct: 61 FQVCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYV 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + ++ N N +E + +N + F G+ L+LT E+ +L LLA +LG V S E Sbjct: 121 FLNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAE 180 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + +EV ++ + + +HI LR K+ + +T+ G GY Sbjct: 181 DIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGY 227 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/227 (40%), Positives = 136/227 (59%), Gaps = 12/227 (5%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGIDT 62 +L+V+D+ L +LL+ LE EG++V VA DGE AL +++ DL+++D M+PK +GI+ Sbjct: 5 VLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIEV 64 Query: 63 LKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LR +T P+IMLTARG E DRV GL+ GADDY+ KPF+ EL ARIRA+LRR Sbjct: 65 CRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRIR 124 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + G T++ A + +E + L TEF LL L QH G+V SRE Sbjct: 125 PGLAEDVIEAGDITMDRVAHRVKRADRE-------IHLGPTEFRLLDYLMQHPGRVFSRE 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L V G + R +D+H+ LR+ L ++++ P +T+R GY Sbjct: 178 QLLDAVWGSDVYVEARTVDVHVGRLRKALNNKEERDP-IRTVRSAGY 223 >UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae RepID=Q2S514_SALRD Length = 237 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 131/229 (57%), Gaps = 14/229 (6%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDTL 63 +L+VDD++++ ++ LE EG+ V A DGE+AL+ IDL++LD+M+P +G + Sbjct: 12 VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETASGKIDLIVLDIMLPGVDGYEVC 71 Query: 64 KALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR +T + P++ L+A+ E D++ GL LG DDYL KP + + LVA ++A+LRRS Sbjct: 72 RELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRRSGV 131 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 E S LEVD L + A +G+ L LT TEF LL L +H + +R+ Sbjct: 132 EE--------SSILEVDGLKIYEDEYRAELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQ 183 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L + + + +R +D HI NLR KL D +T+RG GY V Sbjct: 184 LLETIWKDAMMVTERTVDAHIKNLREKLGDFA---KHIQTVRGVGYRFV 229 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 138/231 (59%), Gaps = 2/231 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 N IL+VDDD E+ LL + L GF+V A +G + +++ + ++L++LD+M+P ++G+ Sbjct: 5 NHILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGL 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R P+IMLTA+G+ +DR++GLE+GADDYLPKPF+ REL+ARI+ ILRR+ Sbjct: 65 SLCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRN 124 Query: 121 SEQQQNNDNGSPTLEVDALVLNP-GRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + + L+ RQ S +G + L +++ +L L +H + +SR+ Sbjct: 125 DRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRPLSRD 184 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L + V GK DR+ID+ IS LR + +T+R GY++ S Sbjct: 185 FLVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLAS 235 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 138/230 (60%), Gaps = 11/230 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGIDT 62 +L+VDD+ + + ++ LE+EG V A +G +A++ + + + D++LLDVMMP +G + Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ +R Q PVI+LTA+ E DRV GLELGADDY+ KPF+ REL++RIRA+LRR H+++ Sbjct: 69 LRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRR-HYTQ 127 Query: 123 QQQNNDNGSPTLEV---DALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 P V D L ++ R+E DG+ + L TE+ LLY L Q+ G V++ E Sbjct: 128 PP------IPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHE 181 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L +V G + ++I+ LR+K+ + + T RG GY V Sbjct: 182 MLLSKVWGPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFV 231 >UniRef50_D2LRZ1 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ1_BACS4 Length = 230 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 133/228 (58%), Gaps = 9/228 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 ++ILLVDD++E+ LL+ L + + A +GE+A+D + D DL+LLD+MMP+ +G Sbjct: 3 DRILLVDDEQEMRKLLRVCLTPYSYLLDEASNGEEAIDKISADFYDLILLDIMMPEVDGF 62 Query: 61 DTLKALRQ--THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + LK LR+ ++TPVI+LTA G V GL+LGADDYL KPF +EL AR+ +++RR+ Sbjct: 63 ELLKTLREHLDNKTPVILLTALGDTERIVEGLKLGADDYLVKPFEPKELAARVESVIRRT 122 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +N + + V LV P SF+ + L LT EF + Y LA + G+V SR Sbjct: 123 ------KNYKSKVESFIVKDLVFQPSNYNISFNNKILPLTKKEFQIFYRLASNRGKVYSR 176 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 +HL + G +R +D H+ N+R KL +T+ G GY Sbjct: 177 DHLLELEWGMEYEGDNRTVDTHVKNIREKLKAVGYTDAIIETVWGIGY 224 >UniRef50_A6TM13 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TM13_ALKMQ Length = 231 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 129/228 (56%), Gaps = 12/228 (5%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD--SIDLLLLDVMMPKKNGID 61 IL+V+DD L++ LE F V+ A DG LDLL + ID ++LD+ +P NG++ Sbjct: 6 ILVVEDDPTTQRLIRHTLEQHQFQVLSAEDGAMTLDLLSNHKDIDAIILDLFLPDCNGLE 65 Query: 62 TLKALRQ--THQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 LK +R H PV++LT+ +LD V+ LE+GADDY+ KPF+ REL+ARI LRR+ Sbjct: 66 LLKTVRSHSIHSDIPVVILTSNDDKLDLVIALEMGADDYITKPFHKRELIARINVCLRRA 125 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + + N + + L+ +E D + LT EF LL L H G+V SR Sbjct: 126 QNTIRSHNTSRS-----ISGITLDITTREVKKDDGLISLTFAEFELLLLFVTHPGKVFSR 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + L ++ G+ R IDMHIS+LR+KL D + +T+RG GY Sbjct: 181 DDLLTKLWGESFVSETRVIDMHISSLRKKLDDSDN--QLIETIRGVGY 226 >UniRef50_Q2S9I1 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=10 Tax=Gammaproteobacteria RepID=Q2S9I1_HAHCH Length = 252 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/233 (39%), Positives = 140/233 (60%), Gaps = 4/233 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGI 60 +++LLV+DD+EL SL+++ L GF V V +G A+ ++L L++LDVM+P +G+ Sbjct: 12 HRLLLVEDDQELASLIQDYLTKNGFQVAVVANGLDAVREILTQRPALVILDVMLPGLSGM 71 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR--- 117 D + R + ++MLTA ++D++LGLELGADDY+ KP R L++RIRA+LRR Sbjct: 72 DVCRQARLDYNGFILMLTALDEDMDQMLGLELGADDYIVKPVQPRLLLSRIRALLRRLEH 131 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + E S + AL ++ + +++ELT EF LL LLA+ LG+VV Sbjct: 132 TGRGEGVAATIQDSSVISAGALTIDLRNRVVRLGARSVELTTAEFELLLLLARSLGEVVD 191 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 R+ + QE+ G DR+ID IS LR+KL D G KT+RG+GY + + Sbjct: 192 RDFIIQELRGFDYDGLDRSIDRRISRLRKKLQDGGAGQDIIKTIRGKGYQLCT 244 >UniRef50_B2SJA5 Two-component system regulatory protein n=11 Tax=Proteobacteria RepID=B2SJA5_XANOP Length = 247 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 13/227 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 + +L+V+D+ L +++ L G + DG QAL DL+LLD+M+P ++G Sbjct: 19 IGHVLIVEDEPRLAAVVGAYLHAGGHSHDWIADGAQALGAFRAKKPDLVLLDLMLPNRDG 78 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ + LR+ PVIM+TAR E+DR+ G+E+GADDY+ KPF+ RE+ AR++A+L R Sbjct: 79 LEICRDLRKESAVPVIMVTARVEEIDRLRGVEIGADDYICKPFSPREVAARVQAVLPR-- 136 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 +++ G+P L ++ AS DG+ L+LT F LL LA G+V SRE Sbjct: 137 ----HRHDPYGAPA---PGLHIDEDACRASVDGRALDLTQVAFRLLRTLAAAPGRVCSRE 189 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 H + + DR +D H+ NLRRKL D +D W +++ G GY Sbjct: 190 HRMGRLSADHRSVTDRTVDSHVKNLRRKLADGED---WVRSVSGAGY 233 >UniRef50_C6VZ09 Two component transcriptional regulator, winged helix family n=28 Tax=Bacteroidetes RepID=C6VZ09_DYAFD Length = 236 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 88/231 (38%), Positives = 136/231 (58%), Gaps = 16/231 (6%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGID 61 K+L+VDDD ++ LL+ L EG++V+ A +G++A+D+ + DL+LLD+MMP+ +GI+ Sbjct: 12 KVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILLDIMMPQLDGIE 71 Query: 62 TLKALRQT---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 T + LRQ T ++ LTAR E V E+GADDY+ KP R L++RI A+ RR Sbjct: 72 TGRILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFRR- 130 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQ-TLELTGTEFTLLYLLAQHLGQVVS 177 + Q ++G T+E+ L +N + G+ + L EF LL+ LAQ +V S Sbjct: 131 ----EAQKAESGD-TIEILDLSINRKNYTVTQGGEKSTVLPKKEFELLFFLAQTPNKVFS 185 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 R+ L Q++ G + +R +D+HI LR KL G + KTL+G GY+ Sbjct: 186 RDELLQKIWGADIYVLERTVDVHIRKLREKL-----GDTYIKTLKGVGYMF 231 >UniRef50_UPI000196BAD1 hypothetical protein CATMIT_00504 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD1 Length = 223 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 136/229 (59%), Gaps = 17/229 (7%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 +KI++VDD+ + L++ L+ GF+ I A + E+ALD++++ IDL ++D+MMP +G Sbjct: 3 SKIMVVDDEMHIRELVRFYLDKAGFDTIEAANAEEALDIVENQYIDLAVVDIMMPGMDGF 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + ++ +RQ + PVIMLTA+ D++ G LG DDY+ KPF+ EL+AR++ IL+R Sbjct: 63 ELVEQMRQYREFPVIMLTAKSQSKDKLRGFSLGIDDYVTKPFDPDELMARVKTILKRYSI 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 N S +++ ++ + + E + Q + L +F L + LA++ Q+ +RE Sbjct: 123 --------NSSNVVKIGDVIFDGDKYEVRYQEQVIHLPLKQFELAFELAKNPNQIFTREQ 174 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGH-PWFK--TLRGRGY 226 L +++ G FDR +D+HI +R L GH P FK T+RG GY Sbjct: 175 LIEKIWGMDYDGFDRTVDVHIKRIRENL-----GHLPGFKVVTVRGLGY 218 >UniRef50_A6VT30 Two component transcriptional regulator, winged helix family n=26 Tax=Gammaproteobacteria RepID=A6VT30_MARMS Length = 245 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 144/233 (61%), Gaps = 9/233 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 ILL++DD +L L+ L +GF V A DG++ L+L + L++LD+M+P +G+ Sbjct: 9 ILLIEDDLKLAELITSYLGQQGFVVHHADDGQKGLELAEIIQPQLIILDLMLPNLDGLTV 68 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + L+ +Q +++LTA G ++D+V LE+GADD++ KP + R L+AR+RA+LRR E Sbjct: 69 CRRLQTWYQGALLILTASGDDMDQVAALEMGADDFVNKPIHPRVLLARVRALLRR---DE 125 Query: 123 QQQNNDNGSPTLEVDALV-----LNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 ++ N + + T+ D L+ +N GR++ G+ ++LT TEF LL+LLA + + VS Sbjct: 126 KRANPLSPASTINNDQLIFDSLKINIGRRQVELAGELIKLTETEFELLWLLASNPEKTVS 185 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 R+ +SQ + G DR+ID I +LR+KL D T+RG+GYL ++ Sbjct: 186 RDEISQSLRGIEYDGLDRSIDNKIVSLRKKLGDSNGLPRRIITVRGKGYLFIT 238 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 136/225 (60%), Gaps = 3/225 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 +L+V+D++E+ ++ L+ +G+NV A +G + L+++++ ++ L ++D+MMPK +GI Sbjct: 6 VLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGITM 65 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR-SHWS 121 + LR+ + PVIMLTA+ E+D++LGL +GADDY+ KPFN EL+AR+ + LRR S + Sbjct: 66 VMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSKYL 125 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + S + L LN +E DG+ +++T EF +L LL ++ G+V S E + Sbjct: 126 SVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSAEEI 185 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 ++V + D + +H+ N+R K+ + K + G GY Sbjct: 186 YEKVWNEEAINTDTVM-VHVRNIREKIEIDTKNPKYLKVVWGVGY 229 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 136/228 (59%), Gaps = 14/228 (6%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL--DDSIDLLLLDVMMPKKNGID 61 ILLV+D+ +L + ++ L+ EG+ VAHDG AL+ L + + D +LLD+M+P +G + Sbjct: 13 ILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISGTE 72 Query: 62 TLKALRQTHQT---PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 K LR+ +T PVIM+TA+G+E+DRV+G E+GADDY+ KPF+ REL+ RIRA+LRR Sbjct: 73 ICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLRR- 131 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +E+ +N + + D L ++ D Q + LT EF LLY G+V +R Sbjct: 132 --TERPADNPD---MITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTR 186 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + L +V G R +D H+ LR KL D + +TLRG GY Sbjct: 187 DALLSDVWGIEADVTTRTVDTHVKRLREKL---GDAGRYVETLRGVGY 231 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 2/227 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 N+IL+VDD+ + LLK LE E F + A +G++A +L ++++ +LLD+M+P+ +GI Sbjct: 3 NEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGI 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 LR+ QTP+IMLTA+G E +RV G E GADDY+ KPF+ RE+V R++A+LRR+ Sbjct: 63 QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + +Q+ + +E L ++ D Q + LT E+ LL LA+ +V RE Sbjct: 123 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPD-RKDGHPWFKTLRGRGY 226 L +EV R +D H+ LR KL + +T+ G GY Sbjct: 183 LLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGY 229 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 133/227 (58%), Gaps = 6/227 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KIL+VDD+ ++ L++ L++ G++V DGE ++L DL++LD+M+PK +GI Sbjct: 3 KKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGI 62 Query: 61 DTLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LR Q++ P++MLTA D++ GL+ GADDY+ KPF+ +EL++RI+AI RR Sbjct: 63 QVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQ 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q S T ++ L + ++E DG+T+ELT EF LL L +H G+V+SR+ Sbjct: 123 TLPGQAE----STTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQ 178 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L V R +D+HIS+LR K+ + T+R GY Sbjct: 179 QLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGY 225 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 129/227 (56%), Gaps = 4/227 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M +L+V+D+ L L LL EGF V DG AL + S D++LLD+M+P +G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K LR PVIM+TAR SE+D+V+GLELGADDY+ KP++ REL+ARIRA+LRR Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGA 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ +D LE + ++ R S +G+ + L EF LL L ++ G+V++R Sbjct: 121 DNDDAGADDG---VLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRG 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L V G + +D+H+ LR K+ + T+RG GY Sbjct: 178 QLIDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGY 224 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 142/234 (60%), Gaps = 12/234 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGID 61 K+LL++D+ + S ++ L G++V VA DG+ L + +++ L++LDVM+P NGI Sbjct: 2 KLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGIA 61 Query: 62 TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH- 119 KALRQ TP++MLTA GS + V GL+ GADDYL KPF EL+ARIR++LRR++ Sbjct: 62 VCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNND 121 Query: 120 -----WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 Q+N N L+V L L+ + AS GQT+ LT TE+ LL + ++ + Sbjct: 122 TAAAATPAVTQSNGN---VLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKR 178 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 V+SR + + V G + +D++++ LR+K+ +RKD +T+ G GY++ Sbjct: 179 VLSRMEILENVWGVDFNMNTKVVDVYVNYLRKKV-NRKDQPALIQTVVGMGYML 231 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 146 bits (368), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 89/229 (38%), Positives = 139/229 (60%), Gaps = 8/229 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 +IL+VDDDR + L+ L G+ V +AHDG +AL+++ D D L+LDVMMP+ +G++ Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63 Query: 62 TLKALRQT-HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR T P+++LTAR S +RV GL+ GADDYLPKPF EL+AR+RA+LRR+ Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKL 123 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + + + S + L L+P +E + + + LT TEF LL +L + +V++R Sbjct: 124 EDDEAAD---SVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSR 180 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHP-WFKTLRGRGYLM 228 + +EV G A+++++ LRRK +G P T+RG GY++ Sbjct: 181 ILEEVWGFDFPTSGNALEVYVGYLRRK--TEAEGEPRLIHTVRGVGYVL 227 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 136/237 (57%), Gaps = 18/237 (7%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL----------LDDSIDLLLLD 51 ++IL+V+D+ + ++ +L+ EGF V VA DG AL+ + ++ DL++LD Sbjct: 24 SRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLD 83 Query: 52 VMMPKKNGIDTLKALRQTHQT-PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVAR 110 +M+P NG+D + LR+ T P++ML+A+ +E DRV+GLE+GADDYL KPF RELVAR Sbjct: 84 LMLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVAR 143 Query: 111 IRAILRRSHWSEQQQNNDNGSP-TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLA 169 RA+LRRS QN +P L + L L P D + L L+ EF LL L Sbjct: 144 CRALLRRS------QNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFM 197 Query: 170 QHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 +H +V SR+ L +++ G + ID+HI LR K+ + T+RG GY Sbjct: 198 RHPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGY 254 >UniRef50_B3DXI2 Phosphate regulon transcriptional regulatory protein phoB n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DXI2_METI4 Length = 258 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 92/229 (40%), Positives = 136/229 (59%), Gaps = 12/229 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGI 60 KIL+V+D+ ++ SL+ L +GF I A +G +AL + + DL++LD+M+P+ +G+ Sbjct: 32 KKILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKELPDLIVLDLMIPEFSGL 91 Query: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 D K L++ T P+++LTA+ DR+LGLELGADDY+ KPF+ REL+ RI++ILRR Sbjct: 92 DVCKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSILRR 151 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + ++N + D + L+P + A F + +ELT EF LL L + G V S Sbjct: 152 -----RLEDNPLAEQIQQEDGIRLDPIDKVAYFKKKKIELTPIEFRLLSTLVEREGAVQS 206 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 RE L +EV G T R ID HI LR KL + +T+RG GY Sbjct: 207 REQLLKEVWGYDKTVDTRTIDTHIRRLRDKL---GRASQYLRTVRGIGY 252 >UniRef50_Q01YI3 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=Q01YI3_SOLUE Length = 225 Score = 146 bits (368), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 137/228 (60%), Gaps = 9/228 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNG 59 M +IL+V+D+ + L++ L +EG++V VA DG A + + DL+LLDVM+P K+G Sbjct: 1 MIRILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDG 60 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 ++ + LR+ +TP++MLTA+ E ++V+GLE+GADDY+ KPF +EL ARI+A+LRR+ Sbjct: 61 LEVCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRA 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + G +EVD R E G+ +ELT EF LL + + G+V+SR Sbjct: 121 SGDTDLETCSFGD--VEVDF-----ARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSR 173 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + L G+ R +D HI+NLRRK+ D + + +RG GY Sbjct: 174 DQLIAATWGRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGY 221 >UniRef50_A7VCT3 Putative uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VCT3_9CLOT Length = 229 Score = 146 bits (368), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 79/210 (37%), Positives = 128/210 (60%), Gaps = 5/210 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD---DSIDLLLLDVMMPKK 57 MN +L++DDD++L +L+K+ +E E + +VAH G + L LL+ D+ L++LDVMMP Sbjct: 1 MNSVLIIDDDKKLCALMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTCSLIILDVMMPDM 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 NG L+ +R+ + PV+MLTA+ E D+V GL LGADDYL KPF EL+AR+ +++RR Sbjct: 61 NGFQVLQKIREKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRR 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 ++ N + T+ + +V++ + + ++LTG EF LL LA + G+V + Sbjct: 121 --YTTLNPVTGNEAATMLLKDMVIDKINRTVTVQNLPVDLTGKEFDLLLFLASNKGRVFT 178 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRK 207 ++ L +V + D + IS LR+K Sbjct: 179 KKQLYTQVWTEEYDFDDNNLMAFISKLRKK 208 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 137/231 (59%), Gaps = 12/231 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 ++L+VDD++ + LK L + V A+DGE+AL+ + ++ D++LLD+M+PK +G+ Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ P+IMLTA+G ++D++LGL+ GADDY+ KPFN E+ AR++AILRR+ Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSI 132 Query: 122 EQQQNNDN----GSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q++ N G ++ D+ L +E + LT EF LL +LA + G+V S Sbjct: 133 TQKEQKSNVIKAGDMKIDCDSRSLYIADKE-------INLTAKEFDLLEILAVNPGKVYS 185 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 R++L + V G+ T R +D+H+ LR K+ + + T G GY Sbjct: 186 RDNLLKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_B9E984 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E984_MACCJ Length = 223 Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 131/226 (57%), Gaps = 11/226 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 N IL+VDD+ + +KE F V VA +G++A++LLD +SIDL ++D+MMP +G Sbjct: 3 NNILVVDDEAAIRCEVKEGFLRHSFQVYVASNGDEAINLLDNESIDLCIVDIMMPGIDGF 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + ++Q +Q PVIMLTAR + D+ + + G+DDY+ KPF E++ R +AIL+R Sbjct: 63 QLCEQIKQDYQLPVIMLTARDALGDKRIAFQAGSDDYVTKPFEIEEVIFRAQAILKRY-- 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + +E L+++ E + + ++L L EF LLY L +H +V +RE Sbjct: 121 -------EKAVEKVEFGKLIIDADSYEVTMEDESLYLPRKEFELLYYLVRHYPKVATREQ 173 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L +E+ G +R +D+H+ +R++L D D +T+RG GY Sbjct: 174 LIEEIWGYDFDGDERTVDVHVKRIRKRL-DAFDSGVEIQTVRGVGY 218 >UniRef50_A3Y9W5 DNA-binding response regulator n=1 Tax=Marinomonas sp. MED121 RepID=A3Y9W5_9GAMM Length = 244 Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 127/224 (56%), Gaps = 7/224 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGIDT 62 IL+VDD + LL E L G+ V +A +G+ AL L++ + DL+LLD+MMP+ +G Sbjct: 21 ILVVDDKSNVQQLLSEFLTGHGYQVRLASNGKAALLALEERVPDLILLDIMMPEMDGYGF 80 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +RQTH PVIM+TA+ E D + G ELGADDYL KPF EL+ RI+A+LRR E Sbjct: 81 IHTMRQTHDLPVIMVTAKQHEGDLIKGFELGADDYLIKPFKLSELLVRIKAVLRRCIKHE 140 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 + L L L+ R +A + GQ + LT +EF LL LL Q+ Q V++ L Sbjct: 141 TLTTH------LSFAELELDKHRHDAIYKGQLIPLTSSEFCLLSLLLQYAEQTVNKAELC 194 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + ++ T + + +HI NLR KL + ++ G GY Sbjct: 195 RYLIENGNTGLESTLKIHIRNLRIKLKQNTNKAFEIDSVFGVGY 238 >UniRef50_C1SIE7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIE7_9BACT Length = 240 Score = 145 bits (367), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 90/230 (39%), Positives = 137/230 (59%), Gaps = 14/230 (6%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGID 61 KIL+VDD+ +L LK +LE ++V A G+ LD + D+ L++LDVM+P +G Sbjct: 15 KILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGFC 74 Query: 62 TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 L+A+R+ TPV+MLTA+ DR+ GL+ G+DDYL KPF EL+AR+RA+LRR Sbjct: 75 ILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRR--- 131 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 +N + +P L+V +VLN + DG L+LT E+ + L + +VV++ Sbjct: 132 -----DNLDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAA 186 Query: 181 LSQEVLGKRLTPFDRA--IDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L+ V G F+ + ID+HI NLR+K+ D + H +T RG GY++ Sbjct: 187 LAGHVWGDEFDEFNASNFIDVHIKNLRKKIGD--ENHLIIRTKRGIGYII 234 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 2/226 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 KIL++DD++++ LL+ L+ E + V + A+ ++ IDL +LD+M+P NG Sbjct: 21 KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ + P+IMLTA+ E D++ GL LGADDY+ KPF E+VAR++A LRR Sbjct: 81 LCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKKY 140 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + L + L LN E DG+ + LT TEF++L++L G VVS E L Sbjct: 141 SPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIEEL 200 Query: 182 SQEVLG-KRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 V + + I +HI +LR KL D D + KT+ G GY Sbjct: 201 FHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGY 246 >UniRef50_A7HMZ4 Two component transcriptional regulator, winged helix family n=7 Tax=Thermotogaceae RepID=A7HMZ4_FERNB Length = 229 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 137/226 (60%), Gaps = 16/226 (7%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHD-GEQALDLLDDSIDLLLLDVMMPKKNGID 61 ++L+V+D+R + L++LL+ +GF VA+ + L ++ +++LLD+M+P N I+ Sbjct: 2 RVLIVEDERIIAENLQKLLKSDGFESDVANGINDMYRKLEKNTYEVILLDLMLPDGNAIN 61 Query: 62 TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 ++ L+ +I+++A+ +++D++LG+ELGADDY+ KPFN RE+VAR++A LRR+ Sbjct: 62 EIQTLKNEFPDIGIIVISAKSTDIDKILGIELGADDYVGKPFNPREVVARVKAYLRRTKG 121 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ + L + P +DGQ ++LT EF +L LLAQ +V SRE Sbjct: 122 IKE---------VIRYGKLEIYPSDYVVLYDGQKIDLTAKEFEILKLLAQRPDRVYSREE 172 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + + + FDR +D+HI++LR+KL G W T+RG GY Sbjct: 173 ILETIWTDEYDVFDRVVDVHINSLRKKL-----GKDWIITVRGVGY 213 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 3/227 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 +ILL++D +++ +L+ LE+ ++V DG + L L + DL++LD+M+P +G+ Sbjct: 3 KRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGL 62 Query: 61 DTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LR + TP++MLTA+ SE DRV+GLE GADDYL KPF+ REL AR++A LRR+ Sbjct: 63 QVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTD 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S Q+++ L L ++ ++ + + + LT EF LL +A H GQV SRE Sbjct: 123 MS-QKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSRE 181 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 L V G + + ++ ++ HI+ LR KL + T+ G GY Sbjct: 182 KLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGY 228 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 127/228 (55%), Gaps = 10/228 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M KIL+VDD+ + L++E L+ G+ A DG AL LL DL++LDVMMP +G Sbjct: 72 MAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDG 131 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + L+ +R H TPVI+LTARG E D++ GLE GADDY+ KPF+ RELVAR++A+L R+ Sbjct: 132 MTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRT 191 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ T+ L ++ G+ + LT EF LL LA + G +SR Sbjct: 192 -----MPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSR 246 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 E + Q+V DR +D H+ LR L + + T+ G GY Sbjct: 247 EKILQKVWNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGY 291 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 134/225 (59%), Gaps = 10/225 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 +ILLVDDD++ LL L+ EG++V AH + A + LL+LD M+P K+G++ Sbjct: 2 RILLVDDDQKAARLLARGLQEEGYDVETAHSVDVAAAHNCYAFSLLILDWMLPGKSGVEF 61 Query: 63 LKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR Q +TP++MLTAR + DR+ GL+ GADDYL KPF EL+A +RA+LRR + Sbjct: 62 CRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVELA 121 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + ++ LV++P + + G L+LT E+ +L LL H G++VSR L Sbjct: 122 Q--------PAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQL 173 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 ++ + L D ID+H+ NLRRKL D +T+RG+G+ Sbjct: 174 AEHIWHADLIAIDNLIDVHMKNLRRKL-DPPGMAALIQTVRGQGF 217 >UniRef50_Q488T3 DNA-binding response regulator n=4 Tax=Alteromonadales RepID=Q488T3_COLP3 Length = 246 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 129/238 (54%), Gaps = 17/238 (7%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M ILLV+DD L + E L +GFNV G+ +D++ ++ D++LLDVM+P NG Sbjct: 1 MYNILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIKKNTTDIVLLDVMLPGLNG 60 Query: 60 IDTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 I+ + +RQ + Q P+IMLTAR E D V+GLE GADDY+ KP R L+ARI Sbjct: 61 IEVCRLIRQHEQSKQVPIIMLTARADEFDEVIGLEAGADDYVIKPVRPRALLARI----- 115 Query: 117 RSHWSEQQQNNDNGSPTLEV----DALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHL 172 + Q +ND P L L +N + + G+ +EL+ + F L LAQH Sbjct: 116 ----NRQLSHNDKVEPDLNAPLIFGELTINQEAKRVLYQGKEVELSTSLFAFLTYLAQHA 171 Query: 173 GQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 G VV R+ + + + + DR D+ +S LR+ D FKT+ G+GYL VS Sbjct: 172 GNVVDRDSVFKALKKREYDGQDRRFDVMLSTLRKLFNDDPQKPQKFKTIWGKGYLFVS 229 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/227 (36%), Positives = 133/227 (58%), Gaps = 11/227 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 +L+++D++ L +LK LE EG+ V +HDG L+L + D+++LD+M+P +G + Sbjct: 10 VLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEEI 69 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R+ +TP++MLTA+GSE +++ GL +GADDY+ KP + RE++AR++ ILRR Sbjct: 70 ARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKEP 129 Query: 123 ---QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 QQ+ G T++ A ++ G + LT TEF +L LA + +V SRE Sbjct: 130 GRIQQEIITAGEITIDTLA-------KKIYLRGTEISLTQTEFDILSTLALYPKKVFSRE 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 +L+ + G R ID HI NLRRK+ + KT+ G GY Sbjct: 183 NLADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGY 229 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 131/229 (57%), Gaps = 11/229 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 MN IL+++D++ ++ ++K LE EG+ V +G +++ + IDL++LD+M+P +G Sbjct: 1 MNNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K LR+ + MLTA+ + D++ GL +GAD+YL KP + REL AR+ A+ RR Sbjct: 61 EEVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVG 120 Query: 120 WSEQQ--QNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 ++ NDN L+++ ++ G+ + LT EF +LY+LA + G+V + Sbjct: 121 CKKENVISFNDN--------KLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFT 172 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 RE + + G DR+ID+HI NLR+K+ + + T+ GY Sbjct: 173 REAIIERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGY 221 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 132/226 (58%), Gaps = 1/226 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 M+KIL++DD++E+ LLK+ LE +G V+ A++G++ ++ + DL++LD+MMP +G Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEMPDLIVLDIMMPDIDGY 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R T P++ L+A+ SE+DR+ G LG DDY+ KPF+ +EL+ARI A LRR Sbjct: 61 EVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + N + L + ++ +E G + LT EF +L LL+ H GQV S+E Sbjct: 121 A-ILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQ 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + ++V G + HI N+R K+ + + KT+ G GY Sbjct: 180 IYEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGY 225 >UniRef50_A9AIE8 Two component transcriptional regulator, winged helix family n=243 Tax=Bacteria RepID=A9AIE8_BURM1 Length = 305 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 95/233 (40%), Positives = 134/233 (57%), Gaps = 9/233 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 +IL+VDDD+EL LL++ L +G V V HD L+ + DL++LD+MMP G+ Sbjct: 67 TQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMP---GV 123 Query: 61 DTLKALRQTHQT----PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 D L ALRQ PVIMLTAR ++DR++GLELGADDYL KPFN REL+AR++A+LR Sbjct: 124 DGLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLR 183 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 R + + P VL+ + S DG+ L+ +EF LL + H + + Sbjct: 184 RRRATPSAAAPEQREP-FAFGRFVLDFQARTLSIDGKPATLSSSEFALLKIFVNHALRTL 242 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 +RE L + + G DR ID+ + LRR L + +T+RGRGY+ V Sbjct: 243 TRERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFV 295 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AE89 Transcriptional regulatory protein cpxR n=110 Ta... 362 4e-99 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 340 2e-92 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 338 8e-92 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 337 1e-91 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 336 3e-91 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 335 6e-91 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 335 6e-91 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 335 7e-91 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 335 7e-91 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 334 1e-90 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 334 1e-90 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 334 2e-90 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 333 3e-90 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 332 5e-90 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 332 8e-90 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 331 9e-90 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 329 5e-89 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 328 7e-89 UniRef50_B8G179 Two component transcriptional regulator, winged ... 328 8e-89 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 328 1e-88 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 327 2e-88 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 326 5e-88 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 325 5e-88 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 325 7e-88 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 325 8e-88 UniRef50_D1C280 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 324 2e-87 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 323 3e-87 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_C4L340 Two component transcriptional regulator, winged ... 322 4e-87 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 322 4e-87 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 322 8e-87 UniRef50_B8G223 Two component transcriptional regulator, winged ... 322 8e-87 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 321 9e-87 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 320 2e-86 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 320 2e-86 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 320 3e-86 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 320 3e-86 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 319 5e-86 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 319 5e-86 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 319 6e-86 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 319 7e-86 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 318 1e-85 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 317 1e-85 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 317 3e-85 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 315 5e-85 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 315 6e-85 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 315 7e-85 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 315 9e-85 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 315 1e-84 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 315 1e-84 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 315 1e-84 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 314 1e-84 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_B8I014 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 314 2e-84 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 314 2e-84 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 314 2e-84 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 313 3e-84 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 313 3e-84 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 312 5e-84 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 312 7e-84 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 312 8e-84 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 312 8e-84 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 311 1e-83 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 310 2e-83 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 310 3e-83 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 310 3e-83 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 309 4e-83 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_D1C683 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 309 5e-83 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_A4J267 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 309 7e-83 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 309 8e-83 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 308 8e-83 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 308 8e-83 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 308 9e-83 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_B8I272 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 308 1e-82 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 308 1e-82 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 307 2e-82 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 307 2e-82 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 306 3e-82 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 306 5e-82 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 305 6e-82 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 305 7e-82 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 305 7e-82 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 305 8e-82 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 305 8e-82 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 305 8e-82 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 305 9e-82 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 305 9e-82 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 305 1e-81 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 304 1e-81 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 304 1e-81 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 304 2e-81 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 304 2e-81 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 304 2e-81 UniRef50_B3PFT8 AbfR arabinofuranosidase two component system re... 304 2e-81 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_Q188S4 Putative lantibiotic resistance two-component re... 304 2e-81 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 303 2e-81 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 303 2e-81 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 303 2e-81 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 303 3e-81 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 303 3e-81 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 303 4e-81 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 302 7e-81 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 302 7e-81 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 302 9e-81 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 301 1e-80 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 301 1e-80 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 301 1e-80 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 301 1e-80 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 301 1e-80 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 301 1e-80 UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae ... 301 2e-80 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 301 2e-80 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 300 2e-80 UniRef50_B4WSE4 Response regulator receiver domain protein n=1 T... 300 2e-80 UniRef50_C0WE14 Two-component system transcriptional regulator n... 300 2e-80 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 300 2e-80 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 300 2e-80 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 300 3e-80 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 300 3e-80 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 300 4e-80 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 300 4e-80 UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromo... 299 4e-80 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regu... 299 4e-80 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 299 5e-80 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 298 7e-80 UniRef50_A9KX94 Two component transcriptional regulator, winged ... 298 9e-80 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 298 9e-80 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 298 9e-80 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 298 1e-79 UniRef50_A0LCI2 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_D1U371 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 297 2e-79 UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea f... 297 2e-79 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 297 2e-79 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 297 2e-79 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_C9XJX9 Two-component system response regulator n=108 Ta... 297 2e-79 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 297 3e-79 UniRef50_C1SP47 Response regulator with CheY-like receiver domai... 297 3e-79 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 297 3e-79 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 296 3e-79 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 296 3e-79 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 296 5e-79 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 296 5e-79 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 295 5e-79 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 295 6e-79 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_B8JG70 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 295 7e-79 UniRef50_Q020N6 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_P54443 Uncharacterized transcriptional regulatory prote... 295 1e-78 UniRef50_A6TSQ9 Two component transcriptional regulator, winged ... 295 1e-78 UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleid... 295 1e-78 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 295 1e-78 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 295 1e-78 UniRef50_B1YJZ1 Two component transcriptional regulator, winged ... 295 1e-78 UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostrid... 294 1e-78 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 294 1e-78 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 294 2e-78 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 294 2e-78 UniRef50_C6CSH8 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_Q2BRQ1 Transcriptional regulatory protein CpxR (Fragmen... 293 2e-78 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 293 2e-78 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_C8P1C0 Regulatory protein VanR n=1 Tax=Erysipelothrix r... 293 3e-78 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_B8G869 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacilla... 293 3e-78 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 293 4e-78 UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria... 293 4e-78 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 293 4e-78 UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicut... 293 4e-78 UniRef50_Q3A190 Two component signal transduction response regul... 293 4e-78 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 292 5e-78 Sequences not found previously or not previously below threshold: UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 310 2e-83 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 305 6e-82 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 304 1e-81 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 303 2e-81 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 302 5e-81 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 302 6e-81 UniRef50_C4L703 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 300 3e-80 UniRef50_A4AL32 Putative two-component system response regulator... 299 5e-80 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 298 8e-80 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 298 9e-80 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 298 1e-79 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 298 1e-79 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 295 1e-78 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 294 1e-78 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 294 2e-78 >UniRef50_P0AE89 Transcriptional regulatory protein cpxR n=110 Tax=Bacteria RepID=CPXR_ECO57 Length = 232 Score = 362 bits (932), Expect = 4e-99, Method: Composition-based stats. Identities = 232/232 (100%), Positives = 232/232 (100%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW Sbjct: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH Sbjct: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 340 bits (874), Expect = 2e-92, Method: Composition-based stats. Identities = 91/231 (39%), Positives = 138/231 (59%), Gaps = 5/231 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 +IL+VDD+ + LL L+ G+ V +A DG AL ++ DL+LLD+M+P+ +G++ Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA-DLVLLDIMLPEVDGLEV 60 Query: 63 LKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + L+ QT P+IMLTA+ E+DRVLGLELGADDY+ KPF+ REL+AR++A+LRRS Sbjct: 61 CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRSA 120 Query: 120 WSEQ-QQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ + N +L + L L+ +A +T+ LT E+ LL LL + G+ SR Sbjct: 121 SVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFSR 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + L + + G R +D+HI +LR KL D +T+RG GY Sbjct: 181 DELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 338 bits (869), Expect = 8e-92, Method: Composition-based stats. Identities = 89/230 (38%), Positives = 126/230 (54%), Gaps = 8/230 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL---DLLDDSIDLLLLDVMMPKKN 58 +KIL+V+DD L LL L EG+ + A DG +AL L L++LDVM+P + Sbjct: 30 HKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFK--PSLVILDVMLPGID 87 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G + + +R P++MLTAR SE D+V GLE GADDYL KPF REL+AR++A+LRRS Sbjct: 88 GFELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRS 147 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 Q G L++ L + R +G L+ + EF L + Q+ +V SR Sbjct: 148 QTQNSQTETTGG---LKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSR 204 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 E L ++V G + R +D+HIS LR+K+ T+RG GY Sbjct: 205 EQLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 337 bits (867), Expect = 1e-91, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 2/229 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 ++L+ DD++E+ LLK+ LE E + V A DGE+AL L ++ +L++LD+MMPK +GI+ Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGIE 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR P++MLTA+ E+D+++GL +GADDY+ KPF+ E++ARI+A++RR Sbjct: 65 VCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLVL 124 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 N + L L ++ + + + + LTG E LL A + QV ++ L Sbjct: 125 GSNANTQEKT-ILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQL 183 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + V D + +HI LR+K+ + +T+ G GY V Sbjct: 184 FRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVG 232 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 98/229 (42%), Positives = 138/229 (60%), Gaps = 4/229 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 K+L+VDDD ++ +L LE EG++VI A DG +A+D D++LLDVM+P +G Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R+T P+IMLTAR E DR++GLELGADDY+ KPF+ +E++AR+RAI RR Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRR---L 118 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + D G L+V VL+ + + G +ELT TE+ LL L H GQV SR L Sbjct: 119 QPASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQL 178 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 ++V ++R +D HI NLR+KL D + KT+ G GY +V Sbjct: 179 IEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVG 227 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 335 bits (861), Expect = 6e-91, Method: Composition-based stats. Identities = 90/238 (37%), Positives = 136/238 (57%), Gaps = 6/238 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNG 59 M+KIL+VDD+ + +LL L+ G+ V+ A DG AL L L S +LLD+M+PK +G Sbjct: 3 MDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDG 62 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 ++ K LRQ QTP+I++TA+ E D+V GLELGADDY+ KPF+ RE++ARI+A++RR+ Sbjct: 63 MEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRT 122 Query: 119 HWSEQQQNND----NGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 E + V L ++ + + +G+ + LT EF LL + G+ Sbjct: 123 TPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGR 182 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 V+SR+ + V G R +D+HIS+LR K+ +T+RG GY V Sbjct: 183 VLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGDG 240 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 335 bits (861), Expect = 6e-91, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 135/230 (58%), Gaps = 4/230 (1%) Query: 1 MNK--ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKK 57 MNK I++VDD++E+ L+ LE EG+ VI A +G +AL+LL+ + +DL++LD+MMP Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 +GI+ +R+ P+IML+A+ ++D++ GL GADDY+ KPFN EL+AR+++ LRR Sbjct: 61 DGIEACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRR 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q N +E+D L +N E + + LT EF +L LLA++ G V S Sbjct: 121 YKKFNVQNGYIN-DDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFS 179 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 E + + V + D + +HI LR K+ + + KT+ G GY Sbjct: 180 IEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 335 bits (861), Expect = 7e-91, Method: Composition-based stats. Identities = 90/227 (39%), Positives = 132/227 (58%), Gaps = 6/227 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 +ILLV+D++ + + LE E + V DG+ AL+ DL++LD+M+P+ G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +A+R P+IMLTA+G DR++GLELGADDYL KPF+ RELVAR+RA+LRR H Sbjct: 70 VCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHAD 129 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + Q LE L ++ + G+ ++LT +EF LL L+++ G+V SR L Sbjct: 130 SEPQRE-----VLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMEL 184 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 ++VLG ++R ID H+ NLR K+ D W T+ G GY Sbjct: 185 VEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRF 231 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 335 bits (861), Expect = 7e-91, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 2/229 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNG 59 M KIL+V+D+ + + K LE E + V A +G + D+ L DL++LD+MMPKK+G Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +RQ P+IMLTA+G E DR+LGL +GADDYL KPF+ RELV R++ ILRR + Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q ++ S +E L + P + +ELT EF +LY++A+H QV SR Sbjct: 121 QVAIQAK-ESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRS 179 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + + + + +S LR KL + W T+ G GY Sbjct: 180 QLLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRF 228 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 334 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 95/231 (41%), Positives = 139/231 (60%), Gaps = 5/231 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M IL+VDD+ L L+ LE EGF V A DG +AL DL++LD+M+P +G Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +R TP+IMLTA+ ++D++LGLELGADDY+ KPFN REL+ARIRA+LRR+ Sbjct: 61 LTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRA- 119 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + + L V LVL+P ++ A G+ LELT E+ LL LLA+H G V +R+ Sbjct: 120 ---EAASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQ 176 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L V G +R +D+H+ +R KL + + +T G GY + + Sbjct: 177 ELLDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEA 227 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 334 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 127/233 (54%), Gaps = 2/233 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 KIL+VDD+ + LL+ LE E + + A +G++A+ L+ + DL+LLD+MMP +GI Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGI 66 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R+ TP+IMLTA+G E +RV G E G DDY+ KPF+ RE+V R++A+LRR+ Sbjct: 67 EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + N L L ++ + DG + LT E+ LLY LA+ +V RE Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPD-RKDGHPWFKTLRGRGYLMVSAS 232 L +EV R +D H+ LR KL + T+ G GY + Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGA 239 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 87/231 (37%), Positives = 138/231 (59%), Gaps = 6/231 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 KIL+VDDD + L+ L EG++V+ A+D E+AL ++ ++S+D+ ++D+M+P +G Sbjct: 28 KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGF 87 Query: 61 DTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + ++ LR + TPV+ L+A+G E D+VLGLELGADDY+ KPF+ RE++ARI+A+ RR Sbjct: 88 ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 S Q + + L ++ R E Q + LT EF LL LA++ G+V S Sbjct: 148 IQLS--AQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFS 205 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 R+ L ++ G R +D+HI LR K+ + + T+RG+GY Sbjct: 206 RDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 88/227 (38%), Positives = 137/227 (60%), Gaps = 6/227 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 KIL+VDD+ ++ +++K L EG+ VI A +G +AL+ + DL++LD MMP+ +GI+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ +R+ Q P+IMLTA+ E+D+++G E G DDY+ KPF+ REL ARI+ IL+R Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR---- 119 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + N L L L P ++E G+ L+LT TEF LL ++ G+ SR L Sbjct: 120 -LEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLEL 178 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + +G+ ++R ID HISNLR+K+ + +T+ G GY + Sbjct: 179 LEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKL 225 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 333 bits (855), Expect = 3e-90, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 151/227 (66%), Gaps = 2/227 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 K+++VDD++ + +L+ L+ EG++V A+DG A+DL+ ++ D++LLD+M+P ++G++ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ ++ P+IMLTA+ SE+D+VLGLELGADDY+ KPF+ REL+AR++A LRR H+S Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR-HYS 122 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + Q+ N + + + +V+ P G+ +ELT EF L + L++H+GQV++REHL Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 Q V G R +D+ I LR K+ D + T RG GY + Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 332 bits (854), Expect = 5e-90, Method: Composition-based stats. Identities = 91/236 (38%), Positives = 134/236 (56%), Gaps = 9/236 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS--IDLLLLDVMMPKKN 58 M ++L+V+DD + +++ L EG DGE AL+LL DS DL+LLDVM+P + Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 59 GIDTLKALRQTHQ----TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAI 114 GI + LR++H PV+MLTAR E V+GLE+GADDY+ KPF+ R+L +R+RA Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 115 LRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 LRR + Q LE L ++ R+ + G+ +ELT EF +L LLA + G+ Sbjct: 121 LRRQRMNAQASPEQRK---LEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGR 177 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 V SRE + + G R+ D+HI +LR+K+ + +T+RG GY Sbjct: 178 VYSREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 332 bits (852), Expect = 8e-90, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 140/242 (57%), Gaps = 14/242 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M++ILLV+D+ + L+ L EG+ V G++A ++ DL++LD+M+P +G Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 60 IDTLKALRQTH--QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR- 116 ++ + +R PVIMLTA+ E+++++GLE+GADDY+ KPF+ REL+AR++A LR Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 117 RSHWSEQQQNNDNGSPTLE----------VDALVLNPGRQEASFDGQTLELTGTEFTLLY 166 R+ +++ DN + + L + P + A + Q L+LT EF LL Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180 Query: 167 LLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 ++ + GQV++RE L +++ G R +D+HI +LR+K+ + +T+RG GY Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 227 LM 228 + Sbjct: 241 RL 242 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 331 bits (851), Expect = 9e-90, Method: Composition-based stats. Identities = 91/231 (39%), Positives = 140/231 (60%), Gaps = 4/231 (1%) Query: 1 MNKI--LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKK 57 M +I L+ DD+ E+ L++ LE EG++V+ A DGE+A+ +++ DL++LD+MMPK Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 +G + + +R H P+I L+A+ S+ D+V GL LGADDY+ KPF ELVAR+ A LRR Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q + ++ S LEV +V++P R+ G+ +ELT EF +LYLLA H +V + Sbjct: 121 FLTLNQPKVAESKS-ALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 E++ Q+V + +HI LR+KL + K + KT+ G GY Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 93/227 (40%), Positives = 131/227 (57%), Gaps = 9/227 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+VDD+ ++ LL L+ E + A +G++ALDL+ D+ L+LLDVMMP+ +G+ Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +R+ P+IMLTAR ELDR+ GL++GADDY+ KPF+ REL+ARI A LRRSH Sbjct: 67 ACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHRF 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 Q S TL + L L+ + G+ + LT EF LL+L Q+ +V SRE L Sbjct: 127 TVDQ-----SATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQL 181 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 ++ G R +D HI LR KL + +T+ G GY Sbjct: 182 LDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKF 225 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 129/231 (55%), Gaps = 2/231 (0%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDT 62 IL+VDD+ + LLK LE E F + A +G++A +L +++ +LLD+M+P+ +GI Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 LR+ QTP+IMLTA+G E +RV G E GADDY+ KPF+ RE+V R++A+LRR+ + Sbjct: 65 ATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTT 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 +Q+ + +E L ++ D Q + LT E+ LL LA+ +V RE L Sbjct: 125 VEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQLL 184 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPD-RKDGHPWFKTLRGRGYLMVSAS 232 +EV R +D H+ LR KL + +T+ G GY S Sbjct: 185 KEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKS 235 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 328 bits (843), Expect = 7e-89, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 134/233 (57%), Gaps = 7/233 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M KILLV+DD+ + + L LL EG+ V VA+DG +AL+ + DL+LLD+M+P+K+G Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K +R+ P+IMLTA+ E+D+VLGL++GADDY+ KPF +EL+ARI A+LRR Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + P ++ ++ G+ + L+ EF +L LL G+V +R+ Sbjct: 121 SDLSKSQKIVAPP------FEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRD 174 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + + + G+ RA+D++I LR K+ D + T+R GY + Sbjct: 175 MIIKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGN 227 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 328 bits (843), Expect = 8e-89, Method: Composition-based stats. Identities = 101/233 (43%), Positives = 148/233 (63%), Gaps = 12/233 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M KILLV+DD + L+ LE EG+ V++A +G +AL+LL+ + DL+LLDVM+P+ +G Sbjct: 1 MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDG 60 Query: 60 IDTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +D K +R +T P+IML+AR DRV+GLELGADDY+ KPF+ REL+ARI+A LR Sbjct: 61 LDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 E+++N+ +L L + P + G+ + LTG EF LL++ + QV Sbjct: 121 -----EERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVF 175 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 SRE+L Q+V G ++ R +D+HISNLR KL K P +++RG GY + Sbjct: 176 SREYLLQKVWGYTVSGDTRTVDVHISNLRSKL---KSVSPIIESVRGVGYRLA 225 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 130/229 (56%), Gaps = 2/229 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 ++LLVDD+ + LL L EGF + DG AL L + + D ++LD+M+P+ +GI Sbjct: 10 KRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGI 69 Query: 61 DTLKALRQT-HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K LR +TP++M++A+ E D+VL LELGADDY+ KPF+ REL+AR++AILRR+ Sbjct: 70 EVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTE 129 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ P + L L P R E D + L LT E+ LL L +H ++RE Sbjct: 130 AEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRE 189 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + + G R +D+HI LR K+ D + +T+RG GY Sbjct: 190 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 125/228 (54%), Gaps = 6/228 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 +IL VDDD ++ +L+ L EGF VI A GE+AL S DL++LD+MMP +G Sbjct: 3 QRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGF 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 +T + L+ + P+I+L+AR E+DRV+G +G DDY KPF+ EL R++A+LRR Sbjct: 63 ETYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLG- 121 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + N L+ L L+ ++ + + +ELT +F LL+L+A + +V ++ H Sbjct: 122 ----EPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAH 177 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L ++ D + +HI LR K+ + KT+ G GY Sbjct: 178 LLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKF 225 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 136/228 (59%), Gaps = 7/228 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 KIL+++D+ + ++ + EGF HDG + +++ DL++LD+M+P +G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+T P+IMLTA+ +E D+V+G E+GADDY+ KPF+ LVARI+A++RR + Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLE-LTGTEFTLLYLLAQHLGQVVSREH 180 + +++ +E + +N +E +G+ +E LT EF LLY L Q+ QV SRE Sbjct: 122 GKAVIDED---MIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQ 178 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L ++V G + +R +D+HI LR+KL + P+ T+ G GY Sbjct: 179 LLEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKF 224 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 140/238 (58%), Gaps = 6/238 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M K+L+VDD+ + +LL+ L+ F+V A +G AL +++++ D++LLD+M+P+ +G Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 60 IDTLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + LK +R + TPVI+LTA+ +E D+V GLE+GADDY+PKPF+ RE++ARI A+LRR Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 119 HWSEQQQNNDNGS----PTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 SE + ++ + + S + Q L+LT EF L+ L H Q Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQ 180 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 V+SR+ L Q V G + R +D+ I++LR K+ + KT+RG GY + Sbjct: 181 VLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGG 238 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 133/229 (58%), Gaps = 3/229 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 +ILL++D +++ +L+ LE+ ++V DG + L L + DL++LD+M+P +G+ Sbjct: 3 KRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGL 62 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LR + TP++MLTA+ SE DRV+GLE GADDYL KPF+ REL AR++A LRR+ Sbjct: 63 QVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTD 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S Q+++ L L ++ ++ + + + LT EF LL +A H GQV SRE Sbjct: 123 MS-QKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSRE 181 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L V G + + ++ ++ HI+ LR KL + T+ G GY Sbjct: 182 KLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 136/227 (59%), Gaps = 4/227 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 ++L+VDD++ + LK L + V A+DGE+AL+ + ++ D++LLD+M+PK +G+ Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ P+IMLTA+G ++D++LGL+ GADDY+ KPFN E+ AR++AILRR+ Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSI 132 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 Q++ N ++ + ++ + + + LT EF LL +LA + G+V SR++L Sbjct: 133 TQKEQKSN---VIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNL 189 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + V G+ T R +D+H+ LR K+ + + T G GY Sbjct: 190 LKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 325 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 128/231 (55%), Gaps = 6/231 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KIL+VDDD + L+ L E F+ + +DGE+A+ + +L+LLD+M+P +G Sbjct: 5 QKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGY 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR--- 117 + + +R+T P+IML+A+G D+VLGLELGADDY+ KPF+ +ELVAR++A+LRR Sbjct: 65 EVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 S + +Q + L++N ++ G ++E+ E L Y LA H QV + Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 RE L + G R +D+HI LR K+ D T+ G GY Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISW--RLSTVWGIGYKF 233 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 99/231 (42%), Positives = 140/231 (60%), Gaps = 4/231 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS----IDLLLLDVMMPK 56 M I++V+D+REL +L++ L EG V V DG AL+ L DL++LD+M+P Sbjct: 1 MADIVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPN 60 Query: 57 KNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +G++ + +RQ+ TP++MLTAR +ELDRVLGLELGADDYL KPF+ REL AR+ AILR Sbjct: 61 VDGLEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 R ++G+ ++ L ++P +E + GQ + LT EF LL+LLA + G+V Sbjct: 121 RVEMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVF 180 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 SR++L V G+ DR +D HI LR+KL TL G GY Sbjct: 181 SRDYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYK 231 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 82/234 (35%), Positives = 136/234 (58%), Gaps = 6/234 (2%) Query: 1 MNK--ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKK 57 M + IL+ +DD ++ L+ L EG+ ++ A DG +A+ L+ ++IDL++LD+MMP Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 58 NGIDTLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +G + ++ +R Q ++ P+I L+A+ S+ D++ GL +GADDY+ KPFN EL+AR+ A LR Sbjct: 63 DGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLR 122 Query: 117 RSHWSEQQ-QNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQV 175 R Q + + + L ++ ++ + ++LT EF +LYLLA H +V Sbjct: 123 RFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKV 182 Query: 176 VSREHLSQEVLGK-RLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 S EH+ Q+V G+ + +HI LR+KL + K W KT+ G GY Sbjct: 183 FSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAF 236 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 132/238 (55%), Gaps = 16/238 (6%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD----------DSIDLLLLD 51 ++IL+V+D+ + ++ +L+ EGF V VA DG AL+ ++ DL++LD Sbjct: 24 SRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLD 83 Query: 52 VMMPKKNGIDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVAR 110 +M+P NG+D + LR+ P++ML+A+ +E DRV+GLE+GADDYL KPF RELVAR Sbjct: 84 LMLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVAR 143 Query: 111 IRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQ 170 RA+LRRS + L + L L P D + L L+ EF LL L + Sbjct: 144 CRALLRRSQNQPAET-----PAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMR 198 Query: 171 HLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 H +V SR+ L +++ G + ID+HI LR K+ + T+RG GY + Sbjct: 199 HPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 93/229 (40%), Positives = 133/229 (58%), Gaps = 8/229 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 K+L+VDDD+ + L+K E EGF V+ DG+ L D ++ D+++LD+M+P ++G+ Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR P+IMLTA+G E DRVLGLE+GADDY+ KPF+ RELVARI+A+LRRS + Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + N L+ L + ++ D E+T EF LLY LAQ+ +V +RE L Sbjct: 126 DPATN-----WQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREEL 180 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 V G R +D+HI LR KL H + +T+ G GY Sbjct: 181 LGAVWGYDYFGDQRTVDVHIRRLRTKLASLP--HEYLQTVWGVGYKFTP 227 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 89/230 (38%), Positives = 127/230 (55%), Gaps = 10/230 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M KIL+VDD+ + L++E L+ G+ A DG AL LL DL++LDVMMP +G Sbjct: 72 MAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDG 131 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + L+ +R H TPVI+LTARG E D++ GLE GADDY+ KPF+ RELVAR++A+L R+ Sbjct: 132 MTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRT 191 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ T+ L ++ G+ + LT EF LL LA + G +SR Sbjct: 192 -----MPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSR 246 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 E + Q+V DR +D H+ LR L + + T+ G GY Sbjct: 247 EKILQKVWNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKF 293 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 132/228 (57%), Gaps = 1/228 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 M+KIL++DD++E+ LLK+ LE +G V+ A++G++ ++ + DL++LD+MMP +G Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEMPDLIVLDIMMPDIDGY 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R T P++ L+A+ SE+DR+ G LG DDY+ KPF+ +EL+ARI A LRR Sbjct: 61 EVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + N + L + ++ +E G + LT EF +L LL+ H GQV S+E Sbjct: 121 A-ILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQ 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + ++V G + HI N+R K+ + + KT+ G GY Sbjct: 180 IYEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKW 227 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 89/233 (38%), Positives = 136/233 (58%), Gaps = 9/233 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M +IL+ DD+ ++ LL LE EG+ + A +G +A++ L +++ L+LLDVMMP+ +G Sbjct: 5 MFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDG 64 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +R+ P+I+LTAR ELDR+ GL++GADDY+ KPF+ REL+ARI A LRR+H Sbjct: 65 LTACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTH 124 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++Q T +V L ++ + S G+T+ LT EF LLYL + +V SRE Sbjct: 125 SFSKEQEA-----TFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSRE 179 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L ++ G R +D HI LR KL + + +T+ G GY + Sbjct: 180 QLLDQIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 134/230 (58%), Gaps = 4/230 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 MN IL+VDD++ + L++ L+ EGF + +++G+ A ++ + ++L +LDVM+P +G Sbjct: 3 MN-ILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDG 61 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +R+ H PVIMLTA+ E+D++ GL LGADDY+ KPF ELVAR++A LRR Sbjct: 62 FTLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + N + L+L+ E + + + + LT EF++L++L + G+VVS E Sbjct: 122 KYNSVEPNQEEH-LIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSE 180 Query: 180 HLSQEVLGKRLTPFD-RAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L EV G + + +HI +LR K+ + + KT+ G GY + Sbjct: 181 ELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKI 230 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 135/231 (58%), Gaps = 10/231 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 ++L+VDDD++L +++K LE EGF+V +A+DG+ + ++ + + ++LD+M+P+ +G Sbjct: 4 QQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGW 63 Query: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + +R + P+IMLTA+ E D+++GL+LGADDY+ KPF+ RELVAR+RA++RR Sbjct: 64 EVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRR 123 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q+ + LE L ++ + ++L EF LLYLL ++ +V + Sbjct: 124 ------DQDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFT 177 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 RE + +++ G R +D H+ +R+KL +T+ G GY Sbjct: 178 REEILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKF 228 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 99/228 (43%), Positives = 143/228 (62%), Gaps = 4/228 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 +L+VDDD +L +LL + LE G+ V GE ++ + S +++LD+MMP K+G++ Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ LR PVIMLTA+G + DR++GLELGADDY+ KPFN REL+ARI+A+LRR+ Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKG-- 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 +NN+ S + V +VL+ Q+ +G +LEL+ TEF LL L + G+ ++R+ L Sbjct: 125 -PENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLM 183 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 V GK FDR+ID+HIS LR D KT+ G GY+ VS Sbjct: 184 TSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVS 231 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 1/227 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 K+LLVDD+ + +++++L+ E + ++ A +GE AL+ +S DL++LDVM+P +G + Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+T + P++ML+A+G +D+ +G LGADDYL KPF+ EL R++A+LRRS Sbjct: 66 VCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFDK 125 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 EQ + + + L +N E G+ + LT EF LL +A+H QV +RE L Sbjct: 126 EQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQL 185 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + I + I LR K+ + +T+ G GY Sbjct: 186 FAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 321 bits (825), Expect = 9e-87, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 134/229 (58%), Gaps = 1/229 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M +L++DD+ E+ L++ L EG+ V A++G ++++ ++ I +++LDVMMP +G Sbjct: 1 MFNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +R+ + P+IML+A+ ++D++ GL GADDY+ KPFN EL+AR+++ +RR Sbjct: 61 FQVCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYV 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + ++ N N +E + +N + F G+ L+LT E+ +L LLA +LG V S E Sbjct: 121 FLNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAE 180 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + +EV ++ + + +HI LR K+ + +T+ G GY + Sbjct: 181 DIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKI 229 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 137/230 (59%), Gaps = 7/230 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M+ IL+VDD+ L +L+ LE EGF+V+ A DG +AL + + DL++LD+MMP+ G Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + L+A + +TPVI+LTA+ + D++LGLELGADDY+ KPFN REL+ARIRA+LRR+ Sbjct: 61 YEFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + L +VL+ + G+ ++LT +EF +L L GQV SR Sbjct: 121 QTPLEPD------VLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRL 174 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L V G +R ID+HI NLR K+ + +T+ G GY Sbjct: 175 DLLDRVSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 136/228 (59%), Gaps = 10/228 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 +L+VDD+ ++ L+ LE F+ + A +GE+AL +L ++ +D++L+DVMMPK +G Sbjct: 4 KTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGF 63 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 +R+ P++ LTARG E D+V GL+LG DDY+ KPF+ EL+ARI AI+RR++ Sbjct: 64 TLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYH 123 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++Q+ + L LV++ ++ + DG + LT EF LL LA+H GQV SRE Sbjct: 124 NKQKNED------LSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSRED 177 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L +V G T R +D HI LR KL D + +T+ G GY Sbjct: 178 LLAQVWGYDYTGNARTVDTHIKTLRMKLKQASD---FIQTVWGIGYKF 222 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 96/228 (42%), Positives = 142/228 (62%), Gaps = 2/228 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 +IL+VDDD++L L+ + L G++V AHDG + L++L ++LDVMMPK +G + Sbjct: 12 QILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFE 71 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 LK LR+ PV+MLTA G E DR++GLE+GADDYLPK F+ REL+AR+RA+ RR S Sbjct: 72 MLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRLS 131 Query: 122 -EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ + TL L ++ + A G+ L LT E+ LL LA+ +V+SR+ Sbjct: 132 MDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRDQ 191 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L V G+ FDR++D+HIS+LRRKL + + +T+R GY+ Sbjct: 192 LLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMF 239 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 132/230 (57%), Gaps = 3/230 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGID 61 +IL+ DD+ E+ +L+ LL EG+ VI A DG + L L D SIDL++LD+MMP NG Sbjct: 3 TRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDSSIDLIVLDIMMPNMNGYQ 62 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 T LR+T P++ LTA+G + D+ LG GADDYL KPF+ EL AR++A+LRR Sbjct: 63 TCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQVY 122 Query: 122 EQQQNND--NGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + ++ + L +D L L +Q A +G+ +ELT EF +L L ++ Q+ S E Sbjct: 123 KGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIFSAE 182 Query: 180 HLSQEVLGKR-LTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L ++ + + I +HI NLR+K+ + KT+ G+GY Sbjct: 183 QLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRF 232 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 134/233 (57%), Gaps = 6/233 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KIL+VDD+ ++ L++ L++ G++V DGE ++L DL++LD+M+PK +GI Sbjct: 3 KKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGI 62 Query: 61 DTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LR+ P++MLTA D++ GL+ GADDY+ KPF+ +EL++RI+AI RR Sbjct: 63 QVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQ 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q S T ++ L + ++E DG+T+ELT EF LL L +H G+V+SR+ Sbjct: 123 TLPGQAE----STTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQ 178 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L V R +D+HIS+LR K+ + T+R GY + + + Sbjct: 179 QLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAPN 231 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 87/231 (37%), Positives = 142/231 (61%), Gaps = 3/231 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGI 60 +ILLV+DD ++ LL+ L G V V DG+ L L ++ DL++LD+M+P +G Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D + LRQ TP++M+TA+ E+D+VLGLELGADDY+ KPF+ RE++AR++A+ RR Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ Q + +P +E+ +V+ P +++ + +G+ ++LT EF LL L A+H G+ SR+ Sbjct: 127 VDQETQGQADDTP-IELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRD 185 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L EV G + + + ++ HI+ LR K+ + KT+ G GY Sbjct: 186 ELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAE 236 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 84/227 (37%), Positives = 134/227 (59%), Gaps = 4/227 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 K+L+ DDD + +++ E + +I A DG +AL++++ + D+++LDVMMP+ +G + Sbjct: 34 KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ TP+IMLTA+ E DRVLGLELGADDY+ KPF+ RE+VARIRAI+RR Sbjct: 94 ACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQP- 152 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + ++ T + L ++ ++E G+ + EF LL L + G V SRE L Sbjct: 153 KPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQL 212 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 ++V G R ID+HI +R++L + +T+ G GY Sbjct: 213 LEQVWGFDYFGDVRTIDVHIKKIRQRLDKLP--YDCIQTVWGIGYKF 257 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 92/237 (38%), Positives = 133/237 (56%), Gaps = 10/237 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 I++ DD+R +T + + LE EG V VA +GE+A+ L + DLL+LD+MMPK +G+ Sbjct: 3 ANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGL 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +RQT TP+IMLTARG E DR+LGL +GADDY+ KPF+ RELV R+ ILRR+ W Sbjct: 63 EVCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGW 122 Query: 121 SEQQQNNDNGSPTLE---------VDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQH 171 + + + L ++ L + P + S +ELT EF LL+LLA + Sbjct: 123 RSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMY 182 Query: 172 LGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 G+V SR L +V + +H+ LR K+ W KT+ G GY + Sbjct: 183 PGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 134/229 (58%), Gaps = 4/229 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 K+L+VDD+ + +L+ L M G+ V+ A DGE+AL+L + D+++LD+MMPK +G Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ P+IMLTA G DR+ GLELGADDY+ KPF+ +EL ARIRA+LRR++ + Sbjct: 76 VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + S + + L ++ +++ D + + LTG EF+LL LL GQ SR + Sbjct: 136 AFSSHLTT-SGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADI 194 Query: 182 SQEVLGK--RLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 QEV G R +D+HIS LR KL T RG GYL Sbjct: 195 LQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 135/229 (58%), Gaps = 3/229 (1%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKN 58 MN IL+VDD++E+ L++ L+ EGF V + G++AL+ ++ ++D+ +LD+M+P + Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDID 60 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G + +R+ + P+IMLTA+ ++D+++GL +GADDY+ KPFN E+VAR++ LRR Sbjct: 61 GFHICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRY 120 Query: 119 HWSEQQ-QNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + ++ L++N + S G+ + LT EF++L+ L +H G+VV Sbjct: 121 MRYNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVP 180 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 E L + V G++ + + HI LR K+ + + KT+ G GY Sbjct: 181 SEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGY 229 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 319 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 135/231 (58%), Gaps = 5/231 (2%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKN 58 M KIL+VDD+ E+ L++ L+ E F V +D E+A + ++ + +DL LLD+MMPK + Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G++ K +R+ + P+IMLTA+G+E+D++ GL LGADDY+ KPF E+VAR++A LRR Sbjct: 129 GLELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRY 188 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 LE L+LN E + + L LT TEF++L +L + G VVS Sbjct: 189 KRYN--MGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSA 246 Query: 179 EHLSQEVLGKRLTP-FDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 E L ++ + I +HI +LR K+ D + + KT+ G GY + Sbjct: 247 EELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKI 297 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 102/228 (44%), Positives = 144/228 (63%), Gaps = 8/228 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 ILLV+D++++ +L + L EGF V +A DG +AL + D DL++LD+M+P +G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 +K +RQ + TP+I+LTAR E+D++LGLELGADDY+ KPF+ REL RI+A+LRRS E Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 Q N + + L +NP R EA L LT TEF +L LLA++ GQV SR H+ Sbjct: 125 QVTN-------VSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHIL 177 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + V G ++R ID HISNLR K+ KT+ G GY +V+ Sbjct: 178 ERVFGDIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVA 225 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 88/236 (37%), Positives = 132/236 (55%), Gaps = 13/236 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M IL+V+DD+E+ L++E LE E F IV +DGE L + + DL++LD+M+PK +G Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 60 IDTLKALRQT---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 ++ +RQ ++MLTA+G E+DR++GL GADDYL KPF+ RELVAR+RA+LR Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASF----DGQTLELTGTEFTLLYLLAQHL 172 R Q + ++ + +AS + LELTG EF LL + Sbjct: 131 RQLRQGQPVGQ-----IYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYP 185 Query: 173 GQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 G+V +R L +++ G +R +D HI LR+K+ + KT+ G GY Sbjct: 186 GRVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 98/240 (40%), Positives = 143/240 (59%), Gaps = 13/240 (5%) Query: 1 MNK-ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL---DDSIDLLLLDVMMPK 56 M+K ILL++DD +L L+ + L M + V A G++ LD+L + +IDL++LD+M+P Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 57 KNGIDTLKALR-----QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARI 111 +G+ + +R QT++ P++MLTA+G DRVLGLE+GADDY+ KPF REL+ARI Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120 Query: 112 RAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQH 171 RA+LRR EQ D+ S +L L + P E + D + + LT +F LL+ A H Sbjct: 121 RAVLRR---HEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATH 177 Query: 172 LGQVVSREHLSQEVLGKR-LTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 G+V++RE L Q + DRAID+HIS LR + D T+RG GY + Sbjct: 178 AGKVLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFAT 237 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 90/236 (38%), Positives = 135/236 (57%), Gaps = 8/236 (3%) Query: 1 MNK----ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMP 55 M + IL+++DDRE++ +L E L EG+ V++AHDGE L LLL+D+M+P Sbjct: 9 MKRMTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLP 68 Query: 56 KKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 K +G + + +RQ + P+I+++AR S++D++ L LGADDY+ KPF+ ELVAR+++ L Sbjct: 69 KVDGFEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHL 128 Query: 116 RRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQV 175 RR H + + L D L +N R+ DG+ L LT EF LL LA+ GQV Sbjct: 129 RRYHRYNGLKEQE---KVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQV 185 Query: 176 VSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 S+E L V + R + +HI N+RRKL D + T+ G GY + Sbjct: 186 FSKEQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIGQ 241 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 91/228 (39%), Positives = 147/228 (64%), Gaps = 7/228 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KIL+VDD++++ +LK LE F++ +A DG++AL +++ + DL++LD+M+P+ +G Sbjct: 3 PKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGE 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +RQ QTP++MLTA+G+E D+V G GADDYL KPF+ REL+ARI+AILRRS+ Sbjct: 63 EVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ + L ++P R + +G+ +LT TEF +L L ++ GQV +RE Sbjct: 123 KAEKAEI----FVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQ 178 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L+++V+G +DR ID HI N+R+KL + + T+ G GY Sbjct: 179 LAKKVMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKF 224 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 88/228 (38%), Positives = 139/228 (60%), Gaps = 10/228 (4%) Query: 5 LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGIDTL 63 L+V+DD +++ L++ +L E F V VAHDG++ L++ + +L++LD+M+P +G + Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 KALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR T TP+IMLTA+ E D+VLGL++GADDYL KPF RE +AR+ A+LRR+ Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 Q TL L + P +A + +T++LT EF LL +LA++ G+ + RE Sbjct: 129 YNQP------DDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQ 182 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L ++V G R ID HI LR+K+ + G+ + +T+ G GY + Sbjct: 183 LLEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKL 230 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 144/233 (61%), Gaps = 6/233 (2%) Query: 1 MNK-ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKN 58 M+K IL+VDD+ + +L+ LE + V+ +G A++++ +D +++D+M+P+ + Sbjct: 1 MSKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLD 60 Query: 59 GIDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 GI+ K +R+ Q P+IMLTA+ S++D++LGLELGADDY+ KPF+ +EL++RI+ ILRR Sbjct: 61 GIEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRR 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + N PTL+ + + ++ R + + ++LT EF LL L ++ QV+S Sbjct: 121 TDR---AINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLS 177 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 R+ + ++V G R +D+HIS+LR KL + KT+RG GY VS Sbjct: 178 RDQILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVS 230 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 133/231 (57%), Gaps = 4/231 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 KIL+VDD++ + ++K LE +GF+VI A DG+ ALD+ +++I L++LD+M+PK G + Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +R P+IMLTA+ E +++ G+ +GADDYL KPF+ RELV R+RA+LRR++ Sbjct: 66 VCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYRD 125 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + T L ++ + G + LT EF +L + + QV SRE L Sbjct: 126 FSPMADI---LTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKL 182 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 ++ G FDR +D +I N+R+K+ + T+ G GY + ++ Sbjct: 183 VEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIPSN 233 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 127/229 (55%), Gaps = 4/229 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M +L+V+D+ L L LL EGF V DG AL + S D++LLD+M+P +G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K LR PVIM+TAR SE+D+V+GLELGADDY+ KP++ REL+ARIRA+LRR Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR-- 118 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + LE + ++ R S +G+ + L EF LL L ++ G+V++R Sbjct: 119 -GADNDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRG 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L V G + +D+H+ LR K+ + T+RG GY + Sbjct: 178 QLIDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKL 226 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 315 bits (809), Expect = 6e-85, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 138/229 (60%), Gaps = 2/229 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M ++L+ DD+ E+ LL LE +G + A +G +AL +++++ +D+ ++D+MMP+ +G Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ +R+ + PVIML+A+ D++LGL+LGADDY+ KPFN E++AR++A LRR + Sbjct: 61 YHLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S ++ LE L LN + + LT TE+ +L+ L ++ G+V +++ Sbjct: 121 KSMSEKEKCEKQ-YLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKK 179 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + V + D AI +HISNLR K+ D + KT+RG GY + Sbjct: 180 QIFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKL 228 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 90/231 (38%), Positives = 121/231 (52%), Gaps = 8/231 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGID 61 +IL+ DDD + +L+ L EGF VI A DG++ALDL L DL++LDVMMPK +G Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +R P+++LTARG +D+V+G LGADDY+ KPF+ ELV R+ AILRR Sbjct: 66 VCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPTL 125 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + S TL L +N + + ELT EF LL+L+A H G +RE L Sbjct: 126 PE-------SRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESL 178 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 V + + I LR K+ D W KT+ G GY A Sbjct: 179 LARVWHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAG 229 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 108/231 (46%), Positives = 164/231 (70%), Gaps = 5/231 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNG 59 M K+LL DDD L+ L+KE + EG+ V A +G +AL+L D D+++LDVMMP+ +G Sbjct: 1 MVKLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +TLK +R PVIMLTA+G ++DR+LGLE+GADDYL KPFN REL+ARI+AILRR+ Sbjct: 61 FETLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRAS 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q+ D+ + +++ ++L + +G+ +ELT +E+TLL + GQV++++ Sbjct: 121 ----QEREDDPTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQ 176 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 LS++ LG++LT +DR++DMHISNLR+K+ + ++G P KT+RG GY+ VS Sbjct: 177 ELSEKALGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVS 227 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 137/233 (58%), Gaps = 2/233 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M KIL+V+D+ ++ L+ + L+ EGF V++AHDG+ A+D +D + +L +LD+M+P +G Sbjct: 1 MRKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + L+ +R+ PVIMLTA+ +++D+V+ LGADDY+ KPF+ EL AR++A+LRR+ Sbjct: 61 SEVLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTE 120 Query: 120 WSEQ-QQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + +N L +L +N E G + L EFTLL LA+ +VV+ Sbjct: 121 GTHHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTI 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + + V GK D + +HIS LR K+ + +T+RG GY +V Sbjct: 181 AQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLVCG 233 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 92/230 (40%), Positives = 135/230 (58%), Gaps = 3/230 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNG 59 M IL+VDD+ + +LL+ LE E F V+ A DG QAL + L D ++LD+M+PK +G Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 I K +R+ +TP+++LTA+ +E D+++GLE+GADDY+ KPF+ RE++ARIRAI RR+ Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +Q + S T+ V L ++ A L LT EF LL L +V SR Sbjct: 121 -TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSR 179 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 E L V G R +D+ +S+LR K+ D + KT+RG GY + Sbjct: 180 EKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQL 229 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 132/228 (57%), Gaps = 8/228 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 K+L+V+D+ + + LEM G+ V A GE AL LL + DL++LD+M+P +G++ Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 62 TLKALRQTHQTP-VIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R+T P +I+LTA+G + D+++GLELGADDY+ KPFN EL+ARI+A+LRR Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 E G +L L+ + + Q +ELT TE++LL + ++ G+ + RE Sbjct: 127 YE------AGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREE 180 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + G+ + +D+HI LR K+ D + KT+ G GY Sbjct: 181 MLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRW 228 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 134/232 (57%), Gaps = 3/232 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 KIL+VDDD L +LL+ L +GF V + EQ LL +S L++LD+M+P ++G+ Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 TLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR P+IM+TA+G E+DR++GLE+GADDY+PKPFN REL+ARIRA+LRR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR-QA 124 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 +E + LN G +E + + + LT EF +L L H + +SR+ Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L G+ + +R+ID+ IS LRR + + + +T+ G GY+ V Sbjct: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 138/232 (59%), Gaps = 7/232 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 ++L+++D++ + ++K L+ E + IV H+G++A+ + D ++LD+M+P +G Sbjct: 6 KRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGE 65 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + K +R Q P++MLTA+ E DR+ GL++GADDY+ KPF+ +ELVAR+RAI+RR++ Sbjct: 66 EICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + + L L ++ E + +ELT TEF LL + Q+ G+V SR+ Sbjct: 126 EGLKAHLIE----LNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDE 181 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L +VLG +DR ID+HI NLR K+ + + + T+ G GY V S Sbjct: 182 LVVKVLGYDYVGYDRTIDVHIKNLRHKIE--CEYYKYIVTVYGVGYRFVKVS 231 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 3/229 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+V+DDRE+ L+ + L EG+ I HDG A++ L D L++LD+M+PK G + Sbjct: 6 KILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYE 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ +R+ TPV++L+A+ E D+++GL LGADDYL KPF EL AR++A LRR Sbjct: 66 VLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRY--L 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 D + + + +N E ++ LT EF +L L Q+ +V ++ L Sbjct: 124 NFSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQL 183 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + + G+ + + +HI LR K+ + +T+ G GY +V Sbjct: 184 FKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVE 232 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 94/236 (39%), Positives = 136/236 (57%), Gaps = 8/236 (3%) Query: 1 MNK---ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPK 56 MNK +LLV+D+ ++ +L+ LE E F V+ A + AL++L +DL++LDVMMP Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60 Query: 57 KNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +G T + +R+ + P++ LTARG E DRVLG ELGADDY+ KPF+ RELV R++A+LR Sbjct: 61 LDGWTTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLR 120 Query: 117 RSHWSEQQQNND---NGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLG 173 R + Q++ L L L P ++A G+TL L+ E+ LL LAQ+ G Sbjct: 121 RRSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAG 180 Query: 174 QVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPD-RKDGHPWFKTLRGRGYLM 228 +V+SR+ L V G R +D H+ LR KL + T+RG GY Sbjct: 181 RVLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKF 236 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 84/240 (35%), Positives = 132/240 (55%), Gaps = 17/240 (7%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-----------DDSIDLLL 49 + IL+++D+ + + L+ EG++ +VA DG +AL+L+ + L++ Sbjct: 21 VANILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLII 80 Query: 50 LDVMMPKKNGIDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELV 108 LDVM+P NG+D + +R+ P++M++A+GSE+DRV+GLE+GADDYL KPF RE++ Sbjct: 81 LDVMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREML 140 Query: 109 ARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLL 168 AR RA+LRR+ + P L L L P A+ G+ L L+ E+ LL L Sbjct: 141 ARCRALLRRTRIQQA-----TLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELF 195 Query: 169 AQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 +H +V RE L +V G + +D+HI LR K+ + T+RG GY Sbjct: 196 MRHPRRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 132/231 (57%), Gaps = 4/231 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL--DDSIDLLLLDVMMPKKNG 59 KIL+VDDD+E+ L++ L EG+ V A+D L +L ++ I L +LD+MMP +G Sbjct: 25 AKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMDG 84 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +K +R+T PVIML+A+ ++LD+++GL GADDY+ KPFN EL AR++A LRR Sbjct: 85 LSMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRFT 144 Query: 120 W--SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 S Q+ D+G +E L +N +E + +LT E+ +L LLA + G+V S Sbjct: 145 EFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVFS 204 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + V ++ + + +HI LR K+ KT+ G GY + Sbjct: 205 TDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKI 255 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 124/228 (54%), Gaps = 2/228 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 KIL++DD++++ LL+ L+ E + V + A+ ++ IDL +LD+M+P NG Sbjct: 21 KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ + P+IMLTA+ E D++ GL LGADDY+ KPF E+VAR++A LRR Sbjct: 81 LCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKKY 140 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + L + L LN E DG+ + LT TEF++L++L G VVS E L Sbjct: 141 SPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIEEL 200 Query: 182 SQEVLGKRLTP-FDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 V I +HI +LR KL D D + KT+ G GY + Sbjct: 201 FHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 131/229 (57%), Gaps = 4/229 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 KIL+VDD+ + +L+ L + G+ VI A +GE+AL + + L++LDVMMPK +G Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR+ P+IMLTA G DR+ GLE+GADDY+ KPF+ +EL ARIR++LRR+ Sbjct: 67 VCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKI 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 N S + + L ++ +++ + + + LTG EF+LL LL G+ SR + Sbjct: 127 TTNLGVPN-SGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185 Query: 182 SQEVLGK--RLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 QEV G R +D+HIS LR KL D T RG GYL Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 91/233 (39%), Positives = 133/233 (57%), Gaps = 5/233 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 IL+VDDD E+ +LL L+ GF A DG + +L+ DL++LDVM+P +G+ Sbjct: 6 HILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGDDGLT 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR + PVIMLTA + DR++GLELGADDY+ KPFN RELVARIR +LRR+ Sbjct: 66 LCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRARAL 125 Query: 122 EQ---QQNNDNGSPTLEVDALVLNPG-RQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + + + S T+ L+ R + DG + L+G E+ LL ++ +V+S Sbjct: 126 PENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRVMS 185 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 R+ L G+ FDR+ID+ +S LR +L D KT+RG GY + + Sbjct: 186 RDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLAT 238 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 + ++L+VDDD ++ ++ L GF+V A DG AL + + DL++LD+M+P +G Sbjct: 55 VARVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDG 114 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 I+ + LR PVIMLTAR E DR+ GLE+GADDY+ KPF+ REL R++++LRR++ Sbjct: 115 IEVFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRAN 174 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + L LV++ + A+ G L LT EF LL L + G+ +R Sbjct: 175 ETVPGAE----AGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRG 230 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 L + V G + +HI LR K+ D T+ G GY Sbjct: 231 ELLEHVWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYR 277 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 136/232 (58%), Gaps = 10/232 (4%) Query: 1 MNK---ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPK 56 M K IL+V+D+ ++ L LE GF G++A + ++ DL+LLD+M+P Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 57 KNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 K+G++ K LR Q P+IMLTAR E+DR+LGLELGADDY+ KPF+ RE+VAR++A+LR Sbjct: 61 KDGMEVCKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 RS+ +++ S + ++L+ +E S G +L+LT +EF +L ++ +V Sbjct: 121 RSNTPQEE------SKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVF 174 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 SR L +G + +DR ID HI NLR+K+ ++ G GY Sbjct: 175 SRNELLDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 2/231 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 + ++V+D+ EL +++ LE G+ V +AHDG +A+DL + D+++LD+ +P +GI+ Sbjct: 65 RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW- 120 + LR V+MLTAR E+D ++GL +GADDY+ KPF+ REL+AR++AILRR Sbjct: 125 VCRRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPK 184 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + Q+ + L AL ++ +E + + LT TEF LL LA+ V SR Sbjct: 185 TGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQ 244 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L V G+ + +D+HI +LRRKL D + +T+RG GY M + Sbjct: 245 LIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRMGTG 295 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 144/232 (62%), Gaps = 5/232 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 +IL+V+DD L L ++ L G +V + DG +A+ ++++ DL++LDVM+P +G+ Sbjct: 10 PRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDGL 69 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R + +P++MLTAR ++D+VLGLE+GADDY+ KP R L+ARIRA+LRRS Sbjct: 70 TVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + ++ LE LV++ G + + +G+ ++ T E+ LL+LLA + G+++SRE Sbjct: 130 APSEEIPQR----LEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSRED 185 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + + + G DR+ID+ IS +R K+ D + KT+R +GYL V Sbjct: 186 IFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEG 237 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 77/228 (33%), Positives = 142/228 (62%), Gaps = 3/228 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 N IL+VDD++E+ +LL+ L+ EG++V A GE+AL +L+ + + L++LDVMMP +G Sbjct: 3 NNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGF 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R+ + P++ML+A+G ++D++ G+ GADDY+ KPFN+ EL RIRA+ RR+++ Sbjct: 63 EVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYF 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + + +++++++ + + + + LT EF +LYLLA + G+V S E Sbjct: 123 LNTK--IQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEE 180 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + ++V ++ + + +H+S LR KL +G+ T+ G GY + Sbjct: 181 IFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKI 228 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 129/229 (56%), Gaps = 3/229 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 K+L+++DD ++ +L+K L G + +A DG ++ L ++ D+++LD+M+PK +G+ Sbjct: 4 KKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGL 63 Query: 61 DTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + LR+ H P++MLT+R E D+V L GADDY+ KPF+ REL AR+ A +RR Sbjct: 64 EVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYR 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 E++ + N T D L L+ + + + +E+T EF LL L ++ G+ SR Sbjct: 124 P-EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRT 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L V G + ++ ++ HI+ LR K+ + + T+ G GY Sbjct: 183 ELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 128/229 (55%), Gaps = 5/229 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M +L+V+D+ L L LL EGF V DG AL D + D++LLD+M+P +G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K LR PVIM+TAR SE+D+V+GLELGADDY+ KP++ REL+ARIRA+LRR Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGG 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + LE + ++ R S +G T+ L EF LL L ++ G+V++R Sbjct: 121 DDDSEMS----DGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRG 176 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L V G + +D+H+ LR K+ T+RG GY + Sbjct: 177 QLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 93/229 (40%), Positives = 136/229 (59%), Gaps = 8/229 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 IL+VDD+ + ++ K LE G+ V+ A G + L + LD+ DL++LD+M+P +G+ Sbjct: 3 PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGM 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR+ ++MLTAR E+DRV GL +GADDYL KPF+ RELVAR+ AILRR Sbjct: 63 EITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + S + + ++P +EA GQ LELT TEF LL LA++ +V+SRE Sbjct: 123 KPVK------SSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSRED 176 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L ++V G DR +D+++S +RRK+ G +T RG GY V Sbjct: 177 LIEKVWGADFYGTDRVVDVYVSQVRRKIEALT-GENLIRTARGVGYRFV 224 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 136/227 (59%), Gaps = 3/227 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDT 62 +L+V+D++E+ ++ L+ +G+NV A +G + L+++++ + L ++D+MMPK +GI Sbjct: 6 VLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGITM 65 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR-SHWS 121 + LR+ + PVIMLTA+ E+D++LGL +GADDY+ KPFN EL+AR+ + LRR S + Sbjct: 66 VMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSKYL 125 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + S + L LN +E DG+ +++T EF +L LL ++ G+V S E + Sbjct: 126 SVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSAEEI 185 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 ++V + D + +H+ N+R K+ + K + G GY + Sbjct: 186 YEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKI 231 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 133/229 (58%), Gaps = 4/229 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 +KIL+VDD+ E+ L++ L+ E + V + ++AL+ +D S IDL +LD+M+P +G+ Sbjct: 3 DKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGL 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R H P+IMLT + +E+D++ GL +GADDY+ KPF EL+AR++A LRR Sbjct: 63 TICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + + + LV+N E + + L LT TEF++L +L ++ G VVS E Sbjct: 123 FSGVKEQNEN--VIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSEL 180 Query: 181 LSQEVLGKRLTP-FDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L E+ G + I +HI +LR K+ D D + KT+ G GY + Sbjct: 181 LFHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKI 229 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 119/229 (51%), Gaps = 5/229 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M ILLV+DD L L E GF V A DG L++ DL++LDVM+P +G Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +A+ + P+++LTA E R+ GLELGA DY+ KPF+ EL+AR+RAILR Sbjct: 61 FSVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILR--- 117 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++Q S L V + L+ + + + +EL+ EF LL L + G +SR+ Sbjct: 118 -WNERQRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRD 176 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + V G +R ID+H+ LR KL +T+RG GY Sbjct: 177 LLLERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 131/229 (57%), Gaps = 2/229 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+V+DD + +++KE L EG+++ A G +A++ ++ ++++D+MMP +GI+ Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +++ +R+ + P+I+L+A+G + D+++GL +GADDY+ KPF+ EL+AR++ +RR+ + Sbjct: 65 SMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIYY 124 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + ++ + E + + + G+ L LT E +L L ++ +V ++ + Sbjct: 125 NETKSIKE-NKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 V G+ + +H+ LR K+ D + +T+ G GY + Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTG 232 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 92/238 (38%), Positives = 144/238 (60%), Gaps = 8/238 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 +IL+V+DD L L KE LE G V V +G +A++ + + DL++LD+M+P ++G+ Sbjct: 27 RILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLS 86 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH-- 119 + +R ++ P++MLTAR +LD+VLGLE+GADDY+ KP R L+ARIRA+LRR Sbjct: 87 ICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQ 146 Query: 120 -----WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 S + + +G L + LV++ +EA + Q+++LT EF LL+LLA G+ Sbjct: 147 GEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLASSAGR 206 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 V+SRE + + G DR+ID+ +S +R K+ D KT+R +GYL V + Sbjct: 207 VLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFVKEA 264 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 12/230 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDL--LLLDVMMPKKN 58 M+K+L+++D+ + +LK LE G+ V+ A +G++ LDL +++ D+ +LLD+M+P + Sbjct: 2 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G LK +R+T + PV+M+TARG E D++LG ELGADDY+ KPF+ RE+VAR++AIL R+ Sbjct: 62 GWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + S+ E +V++ +E + DG+ +ELT EF LL LL + G+VVSR Sbjct: 122 YGSQDDGKT-------EYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSR 174 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 E EV G R +D HI LR KL + KT+ G GY + Sbjct: 175 EKCLNEVWGYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKL 221 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 91/240 (37%), Positives = 132/240 (55%), Gaps = 14/240 (5%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKK 57 M IL+VDD+ E+ LL+++LE EGF+V A GE AL LL + +L+LLD+MMP Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 +G + +R+ P++ L+A+G +D+V+G E+GADDY+ KPF+ EL+ARIRA LRR Sbjct: 61 SGYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRR 120 Query: 118 S-----HWSEQQQNNDNGSP--TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQ 170 H EQ + SP L+ L ++ Q +EL+ EF LL LA+ Sbjct: 121 YERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAE 180 Query: 171 HLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + G V +RE + V G + +HI NLR KL + KT G GY+ + Sbjct: 181 NAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE---TERQFIKTQWGTGYVFIG 236 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 134/232 (57%), Gaps = 9/232 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 ++L++DDD LT+LL E L GF V A L L D DL++LDVM+P +G+ Sbjct: 16 TRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGL 75 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R + P+IMLTARG DR++GLE+GADDYLPKPF RELVARI+A+LRR Sbjct: 76 AVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGTR 135 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + + L + AL +N + + LELT EF LL LA++ G+V+SR+ Sbjct: 136 DDAEA--------LRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDR 187 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + G +DR+ID+ +S LR+KL D + +T+RG GY + Sbjct: 188 ILDGTRGIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIGGG 239 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 139/232 (59%), Gaps = 2/232 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 KIL+V+DD ++ ++ LLE E + VI A +G L LLD++IDL++LD+MMPK NG+ Sbjct: 10 KILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLLDETIDLVILDIMMPKLNGLKV 69 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R+T PV+ LTA+ E D++LGL +G DDYL KPF+ EL+ R++A+LRR + Sbjct: 70 CEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRRYQVYQ 129 Query: 123 QQQNNDNGSP-TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + N+N + +E+ ++ LN E DG +E++ E+ +L L+ QH G++ S +++ Sbjct: 130 GKSTNENEAEKIIEIGSIKLNTAFNEIVADGNKVEVSDLEYKILRLMMQHPGKIFSTQNI 189 Query: 182 SQEVLGKRL-TPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + V + + +HI LR K+ + KT+ G+GY A+ Sbjct: 190 YESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRFEDAT 241 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 136/233 (58%), Gaps = 3/233 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M KIL++DD+ + L + +L+ EGF V A +G + + L+ DL+LLD+M+P +G Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K + + PVIM++A+ +D+VLGLELGA+DY+ KPF++REL+ARI+ +LRR Sbjct: 61 YDLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 +++ + + L L +NP + +G + LT E+ +L L + ++ +R+ Sbjct: 121 HNDEAKYE--YTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRD 178 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L + V G + R++DM I LR+K+ + + + KT+ G GY + S Sbjct: 179 ELLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGDS 231 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 129/228 (56%), Gaps = 8/228 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 +L+VDD+ ++ +L+++ LE EG+ V+ A+DG AL L+ + +D +LLDVMMP +G Sbjct: 5 TTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGY 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D L+ +R+ PV+ LTAR + D++ GL LGADD++ K E+VARI+A+LRR Sbjct: 65 DVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYRR 124 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 E L+ LV++ E DG+ ++LT EF LL L A+H QV +RE Sbjct: 125 GEPAPRA-----VLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQ 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L Q + G+ + +HI LR K+ + + T+ G GY Sbjct: 180 LFQRLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRF 225 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 135/231 (58%), Gaps = 4/231 (1%) Query: 1 MNK--ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKK 57 M K IL+VDDD+++ + L EGF V+ AH+GE+AL +++++ I L +LD+MMP Sbjct: 16 MEKNSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHM 75 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 +GI+ + +R+ H P++ L+A+ S++D+V+G GADDY+ KPF+ E +AR++A LRR Sbjct: 76 DGIELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + Q + + L ++ + G+T+ LT TE+ +LYL+A +V + Sbjct: 136 YTYFNQNAVQ-VIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFT 194 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 E + + V +R + + +HI+ LR K+ + + + + G GY + Sbjct: 195 IEEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKI 245 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 1/229 (0%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 ILLVDDD ++ ++ K L EGF + A G +A+ L DL++LDV +P +G + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R + P++ L+ R ++D+++G +G DDY+ KPF+ LVA++++ +RR Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKELS 125 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 + L L ++ E + +G+ + L EF LL LA++ G+V S EHL Sbjct: 126 GSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLF 185 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + GK R + +HISNLR+K+ + T+RG GY Sbjct: 186 DSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNGG 234 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 93/233 (39%), Positives = 139/233 (59%), Gaps = 4/233 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 +IL+V+DD ++ +L L E + V+ + DG + L LL+ + D L+LD+M+P +G+ Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 61 DTLKALRQ-THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + R T TP+I+ +AR SE+ R+LGLELGADDYL KPF+ ELVAR++A+LRR Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + D G TL+V L ++P +EAS DG L+LT EF LLY A+H G+V SR Sbjct: 125 ALARDSRIDAG--TLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRM 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L V G + ++ ++ HI+ LR K+ T+ GRGY + + Sbjct: 183 DLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPG 235 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 124/229 (54%), Gaps = 5/229 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 IL+ DDD + ++ LE EG+ VI A DGEQA+ L D++++D+MMPK +G++ Sbjct: 5 TILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLE 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + ++ P+I+L+A+ +D+++G ++G DDY KPF+ EL R++A+LRRS Sbjct: 65 ASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKAV 124 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 +++ D L+ + + G+ + LT EF +L+L+A H Q+ SR L Sbjct: 125 PEKKGKD----VLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQL 180 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 +++ + + +HI LRRK+ KT+ G GY + Sbjct: 181 LEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEA 229 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGF-NVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 +K+L++DD++E+ L+K +L EG V+ A L ++ DL++LD+M+P G Sbjct: 38 SKVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEG 97 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K +R P+I L+A+G E D+++GL +G DDY+ KPF+ +E+ R++A LRR Sbjct: 98 YDICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVS 157 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + Q ++ LN + E + + +ELT E L+ QH +V+S+E Sbjct: 158 YLQPSQTGT----IIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKE 213 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L Q V G+ D + +HI LR K+ + + T++G GY V Sbjct: 214 TLYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFV 263 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 95/233 (40%), Positives = 130/233 (55%), Gaps = 3/233 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M +IL+VDD+ + +++ E EGF V GE AL L +++ DLL+LD+ +P +G Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 L+ +R + PVIMLTAR E+DRV+GLELGADDY+ KPF+ RELVAR+RA+LRR+ Sbjct: 61 FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + G L L+ R+ A+F L L EF LL LA H GQV +R Sbjct: 121 -AEASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTR 179 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 E L +V G R +D+HI LR KL + +T G GY + Sbjct: 180 EVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIEG 232 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 309 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 136/229 (59%), Gaps = 7/229 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 IL++DD+ +L LL+ L+ EGFNV A +G + L + D DL+LLD+MMP+ G+ Sbjct: 3 QTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGL 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D ++A + +TP+I+LTA+ + D+++GLELGADDY+ KPFN RE++AR+RA+LRRS+ Sbjct: 63 DFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYK 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ Q + L + +VL QT++LT +EF +L L G V SR Sbjct: 123 AQPQAD------VLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLD 176 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L G+ ++R ID+HI NLR K+ + +T+ G GY Sbjct: 177 LLDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 4/229 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M IL+ DD+ ++T +L + E ++A DGE+A+ + + ++LLDVMMPK++G Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +R PVI++TARG + ++++GL++GADDY+ KPF+ E++ARIRAILRR Sbjct: 61 YEVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMT 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 E +Q ++N L + L +N G + LT E ++ LA + +V +R+ Sbjct: 121 KKENEQTSEN---VLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 +L + G R +D HI LR KL + + KT+ G GY Sbjct: 178 NLLDSLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKF 226 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 131/227 (57%), Gaps = 5/227 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 +L+++D++ L +LK LE EG+ V +HDG L+L + D+++LD+M+P +G + Sbjct: 9 TVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEE 68 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ +TP++MLTA+GSE +++ GL +GADDY+ KP + RE++AR++ ILRR Sbjct: 69 IARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKE 128 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + + + ++ ++ G + LT TEF +L LA + +V SRE+L Sbjct: 129 PGRIQQE----IITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENL 184 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + G R ID HI NLRRK+ + KT+ G GY Sbjct: 185 ADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 131/227 (57%), Gaps = 7/227 (3%) Query: 5 LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGIDTL 63 LLVDDD + L + LE GF+V+ A DG AL L+ D+++LD+M+P+ +G L Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 64 KALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 +R+ PVIMLTA G E DR++GL+ GADDYL KPF+ RELV+R+RA+LRR+ + Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 + L L+++ ++ L LT EF LLY LA H QV SREHL Sbjct: 122 ADEGK-----LLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLL 176 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 V G R +D+H++ LR+KL + + +T+ G+GY V Sbjct: 177 DRVWGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFV 223 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 9/226 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 ++L+VDDD L +L +L EG+ DG +A+ D++LLD+M+P +NG+ Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R P++MLTA+G +D V GLE GADDY+ KPF ELVAR+RA LRR Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETG 136 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + L + + ++ + + DG + LT EF LL LA+ QV +RE L Sbjct: 137 QAEN--------LSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELL 188 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 ++V G R R +++H+ LR K+ + T+RG GY Sbjct: 189 LEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 132/227 (58%), Gaps = 2/227 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 KIL++DD+ E+ L+K L +GF VI A +G AL+L + + DL++LDV++P NG++ Sbjct: 5 KILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLE 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR+ ++P++ L+ + +++D++LGL +G DDY+ KPF+ ELVARI A LRR+ Sbjct: 65 LCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRIL 124 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 Q N+ + S L + L ++ D + + LT EF +L LL+QH V S L Sbjct: 125 TNQTNSADLS-ILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQL 183 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + G R + +HISNLR+K+ T++G GY + Sbjct: 184 YDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKL 230 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 134/229 (58%), Gaps = 14/229 (6%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M +IL+VDD+ ++ ++L+ L EG+ V A DGE+ L L + DL++LDVM+PKK+G Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 L+ +++ +TPVIMLTAR D V G E+GADDY+ KPFN++ L+AR++++LR+++ Sbjct: 66 WSILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTN 125 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + +E+ LV+N S +EL E+ LL L ++ +SRE Sbjct: 126 NMVES--------IIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSRE 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L EV G DR ID HI NLR+K+ KT+RG GY + Sbjct: 178 KLLNEVWGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKL 221 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 85/230 (36%), Positives = 137/230 (59%), Gaps = 12/230 (5%) Query: 1 MNK-ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKN 58 MNK +L+V+D+ + L+++ + EGFNV+ A DGE+AL + ++I DL +LD+MMPK + Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G+ + +R+ TP+I+LTA+ E D++LG ELGADDY+ KPF+ + L+A+ +A+LRR+ Sbjct: 61 GLAVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 N L+ + L +N E +G+ L L+ E+ LL L+ + G +SR Sbjct: 121 G-------TLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSR 173 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + V G R +D +I LR KL D+ + + T+RG GY Sbjct: 174 DRILDNVWGYDYFGDIRTVDTNIKRLREKLLDKAN---YIATVRGSGYKF 220 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 90/229 (39%), Positives = 143/229 (62%), Gaps = 2/229 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KI+++DDDR++ L+K+ L+ +GF+ G+ +L + DL++LD+M+P +NG+ Sbjct: 3 KKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENGL 62 Query: 61 DTLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K LR + P+IMLTA+G E+DR++GLE+GADDYLPKPFN REL+ARI +I RR Sbjct: 63 DICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHE 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ N+ T++ D NP + D + ++LT EF+LL + ++ Q +SR+ Sbjct: 123 MELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLSRD 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + Q GK L FDR+ID+ IS +R+ + + + + KT G GY+ Sbjct: 183 QIMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVF 231 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 129/232 (55%), Gaps = 6/232 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M I++VDD++ L + L+ +G+ I+A DGE+AL L+ D+ DL+LLD+ MP +G Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ + +R PVI L+ R S +D+V ELGADDY+ KPF+ EL ARI+A +R Sbjct: 61 LEVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIR--- 117 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 N + P L LV++P + +G+++ LT E LL A+H QV + E Sbjct: 118 --MYAMNPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHE 175 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L + T + + +HIS+LRRK+ + + +T+RG GY V Sbjct: 176 QLYDRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVPG 227 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 136/228 (59%), Gaps = 2/228 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 N+IL+V+DD E+ LL+ ++ V +DG AL+ DL+LLD+ +PK NG+ Sbjct: 8 NQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGV 67 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + LR+T TP+IM+TA+ E+D+VLGLE+GADDY+ KPF+ REL AR +A++RRS Sbjct: 68 EVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDA 127 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + Q Q ND+ + L+ L +N + + +G+ ++L+ EF LL LLA + G+ SR Sbjct: 128 ANQ-QTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSE 186 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + G + ++ ++ HI+ LR K+ + T G GY Sbjct: 187 LLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRF 234 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 135/232 (58%), Gaps = 3/232 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD--LLDDSIDLLLLDVMMPKKNG 59 ++IL++DDD+ L +LL++ E V A G + D+++LD+M+P +G Sbjct: 3 HRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDIDG 62 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +TLK +R Q PVIMLTAR + DR++GLELGADDY+ KPFN REL+ARI+A+LRR+ Sbjct: 63 FETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRAT 122 Query: 120 WSEQQQNNDNGSP-TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 S + + S + ++ ++ + G+ + +TG E +L L H G ++R Sbjct: 123 ASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPLTR 182 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + L G+ FDR+ID+HIS +R+KL D + KT+ G+GY+ Sbjct: 183 DRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWAE 234 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 128/229 (55%), Gaps = 1/229 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M KIL+V+DD + L K+ LE+ F V + DG L ++ ++ DL++LDVM+PK +G Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D L+ + T PV+M++A+ E+D++ GL LGADDY+ KPF+ ELVAR+++ ++ Sbjct: 61 FDILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYE 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + ++ + + + L +N ++ + + + L EF LL +AQ+ +V ++ Sbjct: 121 RLKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKD 180 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + + G + +HI +R K+ + +T+ G GY + Sbjct: 181 ELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRI 229 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 92/230 (40%), Positives = 137/230 (59%), Gaps = 2/230 (0%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD--LLDDSIDLLLLDVMMPKKNGID 61 I +VDDD E+ +LLK LE F V+ A GE L + +DL++LD+M+P ++G Sbjct: 7 IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQDGFA 66 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 ++LR Q PVIMLTA E+DR++GLE+GADDYL KPFN REL+ARI+AILRR + Sbjct: 67 VCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRRMEHT 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 E + L+ +E F + L+G ++ LL L H G V++RE + Sbjct: 127 EVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGAVLTRELI 186 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 ++ G+ P DR ID+H+S LR++L + KT+RG+GY++ ++ Sbjct: 187 AENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTAS 236 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 90/227 (39%), Positives = 139/227 (61%), Gaps = 8/227 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 K+L++DD++ L L++ E EGF+V VA+DGE+AL + + S D ++LD+M+PK +GI Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +RQ +IMLTA+ ++D++LGLELGADDY+ KPFN REL+AR+R ++RR Sbjct: 78 LCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEKG 137 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 E +++ + L+++ G + + + + LT EF +L LL ++ G+V RE + Sbjct: 138 EVKKDE------YQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEI 191 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 Q V G+ R ID+H+ NLR KL D K P +T G GY Sbjct: 192 FQLVWGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYF 237 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 134/232 (57%), Gaps = 3/232 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 + IL+V+DDRE SL+ + L G +V A DG + + D +DL+++D+M+P ++G Sbjct: 14 IPSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDG 73 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +R Q P+IMLTARG ++DR++GLE+GADDY+ KPFN REL+ARI A+LRR Sbjct: 74 LSLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRR-Q 132 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEAS-FDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 S + + G+ D ++ +E G + LT EF LL + G+V+SR Sbjct: 133 ASALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSR 192 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 E L + G FDR+ID+ +S +RRK+ KT+R GY+ Sbjct: 193 EVLLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTP 244 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 130/235 (55%), Gaps = 5/235 (2%) Query: 1 MNKI--LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKK 57 M I L+V+D+ ++ +++K+ L + F+ + G +A+ L +S D ++LD+ +P Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 +GI+ + +R+ +++L+ARGS+ D+VLGL GADDY+ KPF+ ELVARI A LRR Sbjct: 61 DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q++D L +D +++N D + + L+ EF LL+ LA++ QV S Sbjct: 121 QDRWL--QDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFS 178 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + L V G + I ++I +R K+ + +T+ G GY +++ Sbjct: 179 KSQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFSTSN 233 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 91/230 (39%), Positives = 137/230 (59%), Gaps = 3/230 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 I +VDD ++ L+ + L EG+ + V DG + LLD DL++LDVMMP ++G+ Sbjct: 5 QHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDGL 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R TPV+ L+AR +LD +LGLE+G DDYL KPFN REL+AR++A+LRR+ Sbjct: 65 SLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRATP 124 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEAS-FDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + ++ ++ VLN +E DG ++ L+GTEF LL L + G++V+R+ Sbjct: 125 ASEGASSLL-EGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVTRD 183 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L +V G+ PFDR+ID IS LRRK+ + +T G GY V Sbjct: 184 ELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 86/228 (37%), Positives = 123/228 (53%), Gaps = 5/228 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 + ILLVDD++ + + L G+ V A +G+ AL + DL +LD+MMP NG Sbjct: 6 STILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGY 65 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + LR PV+ L+AR SELD+V+GLE+GADDYL KPF REL+AR+RA+LRR Sbjct: 66 ELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQM 125 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + ++ + + L+ R A +++LT EF LL L + G+V SRE Sbjct: 126 DAEPMAGES----ITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASRED 181 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L +E G + +D HI LR KL +T+RG GY Sbjct: 182 LLREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRF 229 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 305 bits (784), Expect = 7e-82, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 141/229 (61%), Gaps = 10/229 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+++DD +++ LL+ L+ EGF+V A+DG++ L++ S D++LLDVM+PK +G++ Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R+T Q P+IMLTA+ D+V+G + GADDY+ KPF++ EL+ARI+A+LRR+ S Sbjct: 64 VCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKKS 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFD--GQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + E + L +N E D ++L+ EF LL L + G V+SR+ Sbjct: 124 VVHK------GIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + +EV G D +D++I LR K+ DR + +T+RG G++ Sbjct: 178 KILEEVWGFDYIGNDNILDLYIKYLRDKI-DRPYERKFIQTVRGIGFIF 225 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 133/229 (58%), Gaps = 4/229 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 + KIL+ DD+ + + L+ + I A+DG++AL+ + + DL++LD+MMPK G Sbjct: 4 IKKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K +R+ P+IMLTA+G E+DR++GLE+GADDY+ KPF+ RE+V RI+ I RR Sbjct: 64 TEVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVG 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + N + + + ++ + E + + +++T E +LYLLA + G+V+SRE Sbjct: 124 NANIDTNLNRK--LVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSRE 181 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + +V G R +D I +R+K+P+ + KT+ G GY Sbjct: 182 EILDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWS-IKTVYGIGYKF 229 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 ++L+VDDD + +++ L+ G+ V +A DGE AL L + DL++LD+M+P G+ Sbjct: 9 ARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGL 68 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + LR+ + PV+MLTA G E DRV+GLE GADDY+ KPF+ RELV R+ +ILRR+ Sbjct: 69 EVCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 128 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 S+ + L AL L+ + + DG L LTG EF LL L +H G+ SR Sbjct: 129 SQPAEGE-----VLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAE 183 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 L ++V G + +H+ LR K+ T+ G GY Sbjct: 184 LLEQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYR 229 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 110/228 (48%), Positives = 147/228 (64%), Gaps = 5/228 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDT 62 ILL+DDDREL L+ L EGF+V HDG L L D +L ++D+MMP KNG+D Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ LRQ+ PVIMLTARG E+DR+LGLELGADDY+PKP N REL ARIRA+LRRS + Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDTQQ 122 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 + + +L +P + + G+ ++LT TE+ +L +L QH G+VVS+ LS Sbjct: 123 ESDDKQET----RFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSKYELS 178 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 Q LGKR PFDR +D+HI +LR+K+ + KT+R G+L V Sbjct: 179 QAALGKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFVP 226 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 105/232 (45%), Positives = 152/232 (65%), Gaps = 4/232 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 + ILL+DDD++L LL E L+ EG+ + AH GE ++ + DL+LLDVMMP +G Sbjct: 4 HSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGIDGF 63 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 +TLK +R++ PV+MLTA+G E DR+LGLELGADDYL KP++ REL+ARI+A+LRR Sbjct: 64 ETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIEL 123 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + Q+ +DNG L + + LN DG+ + +T +EF +L +L G+ V +E Sbjct: 124 DKNQKEDDNG--ILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPKED 181 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L EVLG+ + +DR+IDMH+SN+RRKL + +T+RG GY+ V S Sbjct: 182 LYLEVLGREIMAYDRSIDMHVSNVRRKLGGTTEQSK-IQTIRGIGYMFVDPS 232 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 KIL+VDD+ ++ S +K+ E +G+ VI A +G +A++ D ID++LLD+MMP +G Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKDIDIILLDIMMPNIDGFQV 63 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R P+I L+AR SE+D++ GL +G DDY+ KPF+ +EL AR++A LRR Sbjct: 64 CQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR----- 118 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 +++ N + L L+ ++ ++ + + T EF ++ LLA H QV S+E + Sbjct: 119 EKRIPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIY 178 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 ++V G + HI +R K R T+ G GY Sbjct: 179 EKVWGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRW 224 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 7/228 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M KIL+V+DD+++ L LL+ E ++ + A+DGE A++ ++ DL++LD+ +PK++G Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 LK ++ PVI+LTARG E+D++ G LG DDYL KPF+ EL+ RI+A+LRR Sbjct: 61 FSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ L+ + +N +E +G+ +ELT E+ LL LL ++ ++ ++E Sbjct: 121 KGRGEEE------ILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKE 174 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 + + + + + LR K+ + KT+ G GY Sbjct: 175 QIMDRLWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 95/228 (41%), Positives = 127/228 (55%), Gaps = 11/228 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDT 62 +L+VDD+ + L++ L E V+ A DG AL + D+ DL+LLDVMMP+ +G T Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ +R+ PVIMLTARG DRV GL +GADDY+ KPF+ REL AR++A+LRRS Sbjct: 68 LQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRS---- 123 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 + + +L + P + A + G+ L LT EF LL LLA H GQV SRE L Sbjct: 124 --AGQVEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLL 181 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + G R +D HI NLR KL + T+ G GY Sbjct: 182 DRIWGPDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRFAE 226 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 95/234 (40%), Positives = 133/234 (56%), Gaps = 5/234 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 +IL V+D+ + L+ LE EG+NV A+ G QAL L + D ++LDV +P +NG Sbjct: 5 KQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQNGF 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + K LRQ +QTP++ LTAR E+DRV+GLE+GADDY KPF+ RE+VARI+AI RR Sbjct: 65 EVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEI 124 Query: 121 SEQ----QQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 Q Q + L+ NP + + GQ L+LT E+ LL+LL QH +V Sbjct: 125 QAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPEKVF 184 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 SR+ L + +R +D HI +LR+KL +T RG GY +V Sbjct: 185 SRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSLVK 238 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 7/228 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDT 62 ILL++DDR + +++KE LE E F V+ DGE + + L+L+D+M+PK +G Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R + + P+I+++A+ ++ D+V LGADDY+ KPF+ EL AR++A +RR S Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 QQ + L+ + ++ + G+ + LT EF LL LA H G+V ++E L Sbjct: 123 PQQEDR-----LQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELY 177 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 V R + +H+ N+R KL D + +T+ G GY + Sbjct: 178 AAVWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIG 224 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 138/228 (60%), Gaps = 7/228 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSID--LLLLDVMMPKKNGI 60 KIL+VDDD+E+ LL+ EG+ + A++G+ A+ L+ D L++LD+MMP+ NG+ Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNGM 61 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D ++ +R+ P+++L+A+ +++D++ GL GADDY+ KPFN E++AR++++LRRS Sbjct: 62 DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRS-- 119 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEA-SFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + Q ++ L V LV+N E + G ++LT EF +LYLLA H +V S + Sbjct: 120 --ENQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSAD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 + + V + + + +H+S+LR K+ G +T+ G GY Sbjct: 178 DIFERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYK 225 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 88/236 (37%), Positives = 134/236 (56%), Gaps = 11/236 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 IL+ DDD+++ LL+ LE EG+ V A DG +AL + IDL+LLD+MMP+ +G Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ +R+T PVIM++A+G + D+++GL+LGADDYL KPFN E +AR+R+ LRR++ Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 123 QQQNNDNGSP--------TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 + D+ S L V L L+ + L+LT EF +L L H G+ Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPGR 190 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 V +++ + +E G+ + + IS LR KL D + T+RG GY M + Sbjct: 191 VFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRMEA 244 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 93/232 (40%), Positives = 134/232 (57%), Gaps = 3/232 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 +IL+VDDD L +LL+ LE +GF V AHD Q LL L++LD M+P ++G+ Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 62 TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LRQ++ TP+IMLTARGS+ DR+ GLE GADDYLPKPFN EL+ARIRA+LRR Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR-QV 140 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 E + + L+ + + +GQ + LT EF +L L QH + ++R+ Sbjct: 141 REVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDK 200 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L G+ +R+ID+ +S LRR + D + +T+ G GY+ V Sbjct: 201 LMNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPDG 252 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 129/226 (57%), Gaps = 4/226 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 ++L+VDD++ L ++ L GF+ AH G QA+D S D+++LD+ +P+ +G++ Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R ++MLTARGSE D++ GL LGADDY+ KPF+ RELV R+ A+LRR S Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 L V L+L+P + T+ELT TEF LL LA GQV++R L Sbjct: 162 TTPPQVTTP---LIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDL 218 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 EV +R +D+HI NLRRKL G + T+RG GY Sbjct: 219 VTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_B3PFT8 AbfR arabinofuranosidase two component system response regulator n=26 Tax=Proteobacteria RepID=B3PFT8_CELJU Length = 232 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 113/230 (49%), Positives = 161/230 (70%), Gaps = 4/230 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M KILL+DDD+EL LL E L EGF V + HDG+QA++L + + L++LDVM+P ++G Sbjct: 1 MLKILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D LK LRQ QTPVIMLTA+G +DRV+GLE+GADDYL KP + RELVARIRAILRR+ Sbjct: 61 FDVLKILRQHSQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRRAS 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 +E Q N L L L+ G + A++D Q + LTGTEF++L +L + GQV+S++ Sbjct: 121 IAEANQPN---VERLTSGKLSLHLGTRTATWDNQDVVLTGTEFSVLEILVRRAGQVISKD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 ++++ L ++LTP+DR+ID+H+SN+R+K+ +RG GY++ Sbjct: 178 DMTEQALNRKLTPYDRSIDVHVSNIRKKIALAGSTKDLIINVRGAGYMLT 227 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 137/232 (59%), Gaps = 11/232 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M I +++DD ++ LL + EGF+V +G+ A + + + D+++LD+MMP+ +G Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDG 60 Query: 60 IDTLKALRQTHQ---TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 ++ K +R + P+IMLTA+ +E+D+++GLELGADDY+ KPF+ REL+AR++A+LR Sbjct: 61 LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 RS P + L ++P + E + GQ + LT T+F LL L G+V+ Sbjct: 121 RSKSLHFP----TAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVL 176 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 SR+++ + V +DR ID+HI LR L + + KT+RG GY Sbjct: 177 SRDYIIEHVWAWDKDVYDRTIDVHIKKLRELLKEYGN---CIKTIRGVGYKW 225 >UniRef50_Q188S4 Putative lantibiotic resistance two-component response regulator n=6 Tax=Clostridium difficile RepID=Q188S4_CLOD6 Length = 230 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 129/228 (56%), Gaps = 1/228 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 M+KIL++DD+ +L LL++ L+ +G V++A+DG+ ++L DL++LD+MMPK NG Sbjct: 1 MSKILIIDDEMDLVMLLEDELKAKGHEVLIAYDGQAGIELSKQEPDLIILDIMMPKMNGF 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +A+R P+I L+A+ SE D++ GL G DDY+ KPF REL+ARI A LRR Sbjct: 61 EVCQAIRDDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 S Q N +N TL L L + DG+ ++LT E+ ++ LLA H GQV SRE Sbjct: 121 S-QYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQ 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + ++V G + + +R K + T+ G GY Sbjct: 180 IYEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGYKW 227 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 3/229 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M KIL+V+DD ++ + ++ L GF V A DG L + D DL+LLD+M+P +G Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LR+ + PV+M+TAR E+D + GL +GADDY+ KPFN ELVAR+R+ + R Sbjct: 61 FAVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYE 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + ++ AL + D + + T EF LL LA+H V SRE Sbjct: 121 RILASVKPEQH--VVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSRE 178 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + V G + +HI+ +R K+ + + +T+RG GY Sbjct: 179 ALFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 3/225 (1%) Query: 5 LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDTL 63 +LV+DD ++ ++ L EGF ++ A DGE+ + L S DL+LLD+M+PK NG+D L Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 64 KALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQ 123 K +R+ PV+M++A+ ++D+ LGL GADDY+ KPF+ EL AR++A +RR+ Sbjct: 61 KIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYSA 120 Query: 124 QQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQ 183 ++ N + + L ++ +G+ L+LT TE+ LL L A + +V ++E + + Sbjct: 121 EEPAVNK--VIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYR 178 Query: 184 EVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 V + I++H+ LR K+ D + KTL G GY + Sbjct: 179 SVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 136/228 (59%), Gaps = 4/228 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KI +VDD+ ++T ++K LE G+ V VA++G A++L + + DL++LD+M+P G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D + LR+ + P+IMLT + E D + GL++GADDY+ KPF+ R+LVAR++A+LRR+ Sbjct: 70 DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRT-- 127 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 E + N +L + L++N E G + LT E+ +L + ++ G++ +RE Sbjct: 128 -EDELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREE 186 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L LG+ +DR ID HI NLR K+ D + T+RG GY Sbjct: 187 LIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 129/227 (56%), Gaps = 11/227 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 IL+V+D+ +L ++ L+ EG+ V V +DG L + + DL+LLD M+P +G+D Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 LKALRQT-HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K LRQT + P+I+LTA+ DRV GL+ GADDY+ KPFN EL+AR+RA LRR+H Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNH-- 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + L+ L LN +E + +ELT EF LL L H QV+SR+ + Sbjct: 124 ------EEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQI 177 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + V G I++++ LR KL ++ +T+RG GY++ Sbjct: 178 LERVWGYDFMGDSNIIEVYVRYLRLKLEAEQEK-RLIQTVRGVGYVL 223 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 138/228 (60%), Gaps = 7/228 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSID--LLLLDVMMPKKNGI 60 KIL+VDDD+E+ LL ++ EG+ I A+ G++A+ L + D L++LD+MMP +G+ Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSGM 61 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D +K +R+ Q P+I+++A+ +++D++ GL GADDY+ KPFN E++AR++++LRRS Sbjct: 62 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 121 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEA-SFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 D LEV L + E + G+ ++LT EF +LYLLA H +V S + Sbjct: 122 EVTNSEPD----VLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSAD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 + + V + + + +H+S+LR K+ + DG +T+ G GY Sbjct: 178 EIFERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYK 225 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 123/229 (53%), Gaps = 6/229 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 + +ILL++DD + + ++ L +G VI A G L+L D++L+D+M+P +G Sbjct: 18 VPRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDG 77 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + LR++ P+IM+TAR D V GLE GADDY+ KPF +EL ARIRA+LRRS Sbjct: 78 FECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSR 137 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + +++ L + P +G+ L LT TEF LL LA +V SRE Sbjct: 138 SAGGPAGE-----VIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSRE 192 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + V G R +D+H+ LR K+ + T+RG GY + Sbjct: 193 QLLERVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKI 241 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 95/235 (40%), Positives = 137/235 (58%), Gaps = 6/235 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 + IL+V+D +L +L L G+ V A DG AL L DL++LD M+P+ +G Sbjct: 5 VPTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDG 64 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ L+ +RQT TPV+MLTAR E D V+GLELGADDYL KPF REL+AR+RA+LRR Sbjct: 65 LEVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQ 124 Query: 120 WSEQ--QQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 +Q Q + + L LVL+P + Q L+LT TEF +L LL ++ G+ S Sbjct: 125 RIQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFS 184 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 R +L + G+ DR++D + LR+KL D D +T+ G GY + + + Sbjct: 185 RNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRLQAEA 236 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 94/238 (39%), Positives = 130/238 (54%), Gaps = 13/238 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL---DDSIDLLLLDVMMPKKN 58 +LL++DD +L L+ E L M + V A + L+ L SIDL++LD+M+P + Sbjct: 9 KTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDMD 68 Query: 59 GIDTLKALRQTHQ-----TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRA 113 G+ + +RQ T +IMLTA+G DRVLGLE+GADDY+ KPF REL+ARIRA Sbjct: 69 GMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIRA 128 Query: 114 ILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLG 173 ++RR QQ DN L L + P E + D + + LT +F LL+ A H G Sbjct: 129 VMRRHDLPLHQQKEDN----LVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSG 184 Query: 174 QVVSREHLSQEVLGKR-LTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 +V+SRE L + DRAID+HIS LR + D T+RG GY + Sbjct: 185 KVLSREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFAT 242 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 131/232 (56%), Gaps = 9/232 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 K+L+++DD + L++ ++ G++ I A DGE+ L+L +S D ++LD+M+PK NG + Sbjct: 6 KVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGWE 65 Query: 62 TLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 K +R + P+IMLT +G D + GL +GADDY+ KPF+ EL+AR++ +LRR+ Sbjct: 66 VCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTIL 125 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 SE +++ L+ D ++++ + + +++ E L Y LA + QV++R+ Sbjct: 126 SESEKDR------LQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQ 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L V G R +D+HI +R KL + K T+RG GY S Sbjct: 180 LLDRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAKWS-IVTIRGVGYRFEENS 230 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 93/234 (39%), Positives = 137/234 (58%), Gaps = 9/234 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD----DSIDLLLLDVMMPK 56 M +IL+VDD+ + ++L+ LE EGF V A DG AL L + +DL+LLDVMMP Sbjct: 1 MTRILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPG 60 Query: 57 KNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +G++ L+ LR T VI++TAR E+D+++GL +GADDY+ KPF+ RE+ AR++++LR Sbjct: 61 MDGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 R P L D L ++P +E + DG + LT EF LL+ L + G+V Sbjct: 121 RRRDG-----TTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVF 175 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 SR L ++V G +R +D+HI NLR +L D T+RG GY + Sbjct: 176 SRAQLLEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFIG 229 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 90/231 (38%), Positives = 130/231 (56%), Gaps = 12/231 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 +L+V+D+ L +LL+ LE EG++V VA DGE AL +++ DL+++D M+PK +GI Sbjct: 3 AHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGI 62 Query: 61 DTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + + LR +T P+IMLTARG E DRV GL+ GADDY+ KPF+ EL ARIRA+LRR Sbjct: 63 EVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRR 122 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + +E + ++ + + L TEF LL L QH G+V S Sbjct: 123 IRPGLAE-------DVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFS 175 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 RE L V G + R +D+H+ LR+ L K+ +T+R GY Sbjct: 176 REQLLDAVWGSDVYVEARTVDVHVGRLRKALN-NKEERDPIRTVRSAGYAF 225 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 8/231 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 IL+VDDD+ + LL++ LE + F V+ A + E+A + S +D L+LD+MMP +NG Sbjct: 4 KTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGF 63 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R P++ L+AR +++D++ GL LG DDY+ K + E+VAR++A+LRRS Sbjct: 64 AFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRS-- 121 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 N LE L LN +E + DG+ + LT E+ LL L +H V S + Sbjct: 122 ---ASNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQ 178 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L ++ + +H+S LR K+ + + + G GY Sbjct: 179 LLDKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEGG 227 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 123/231 (53%), Gaps = 4/231 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 ++L+VDD+ + +LL+ L EGF V A +G +AL++ + D++LLD+M+P +G Sbjct: 15 QVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQ 74 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R+ ++MLTAR D+V GL +GADDYL KPF EL+AR+ +++RRS + Sbjct: 75 VCKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + + LE L + P +E ++E T EF L LA+ + SRE L Sbjct: 135 QSIRRQEAA---LEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREEL 191 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + G R +D HI N+R K G+ +T+ G GY A Sbjct: 192 VNLIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNGAG 242 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 132/231 (57%), Gaps = 7/231 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDT 62 IL+V+D++E+ ++ L +G+NV ++G + L ++++ I L ++D+MMPK +GI Sbjct: 6 ILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGITL 65 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW-- 120 LR+ + PVIML+A+ E+D+++GL +GADDY+ KPF EL+AR+ + LRR Sbjct: 66 TMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKYL 125 Query: 121 ---SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 ++Q ++ + L LN +E + DG+ ++ T EF +L LL ++ G+V S Sbjct: 126 NMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNAGRVFS 185 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + + V + D + +H+ N+R K+ + K + G GY + Sbjct: 186 ADEIYERVWNENAINTD-TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKI 235 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 132/227 (58%), Gaps = 2/227 (0%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGIDT 62 IL+VDDD E+T LL E L F V A D + L +++L++LDVM+P +G+ Sbjct: 35 ILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPGTDGLTL 94 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R+ Q PVIMLTAR + DR++GLE GADDY+ KPF RELVARI +LRRS ++ Sbjct: 95 SREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLRRSQGAK 154 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQE-ASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + N S + D L+ + S G + L+ EF LL Q ++ SR+ L Sbjct: 155 EVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRRLFSRDQL 214 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 ++ G+ + F+R+ID+ +S LR+KL D D KT+RG GY+ Sbjct: 215 MEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMF 261 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 125/228 (54%), Gaps = 2/228 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 KILLV+DD ++ ++K LE EGF V +DG A + L + DL+LLD+M+P +G Sbjct: 4 KKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGY 63 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R+T TP+IMLTA+G ++V GL +GADDY+ KPF EL+ARI A+LRR Sbjct: 64 QVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQ 123 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ N G+ LE D L+ + + + + E LL L + QV RE Sbjct: 124 DHEEVNRKEGNR-LEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREE 182 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + + G DR ID++I LR++L + KT+ G GY Sbjct: 183 LIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKF 230 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 130/229 (56%), Gaps = 3/229 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 + IL++DD+ ++ LL L+ GF A +G AL + + IDL++ D+MMP +G Sbjct: 11 IKTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDG 70 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LK +R + P + L+A+ ++D+++GL+LGADDY+ KPFN E+V+R++A+ RR Sbjct: 71 YELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMD 130 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + +++ ++L+ + +GQ E+T EF +L LL +H G+V ++ Sbjct: 131 VFSKGEKQ--NHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKA 188 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + V G+ + I ++IS LR K+ D + T+RG GY Sbjct: 189 SIYEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRF 237 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 83/257 (32%), Positives = 128/257 (49%), Gaps = 32/257 (12%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 IL+V+D+ ++ L++ L EGF + DG+ ALD DL++LD+M+P +G++ Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 63 LKALRQTHQT---PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +RQ ++ ++MLTARG E+DR++GL GADDY+ KPF+ RELVAR+RA+LRRS Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 120 WSEQQQNNDNGSPTLEVD------------------ALVLNPGRQ----------EASFD 151 Q + VD L + + + Sbjct: 123 RGSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQLEIA 182 Query: 152 GQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDR 211 LELT EF LL + G+V +R L ++ G+ +R +D HI+ LR+K+ Sbjct: 183 QIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRKKIEPD 242 Query: 212 KDGHPWFKTLRGRGYLM 228 + KT+ G GY Sbjct: 243 PSAPTFVKTVVGVGYRF 259 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 7/230 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGF-NVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 +IL+VDD+++L +L++ LE EGF + AH + D+ + L +LDVM+P G Sbjct: 4 PRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGEG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +R P++ L+A+ E+D++LGL +G DDY+ KPF+ +E+ R++A LRR Sbjct: 64 YQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRVS 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 E V +N E +G+ LELT E LL ++ +++S+E Sbjct: 124 MMEAPVAETT-----TVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKE 178 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L +V G+ D + +HI LR K+ + KT++G GY + Sbjct: 179 TLFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLT 228 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 136/232 (58%), Gaps = 4/232 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNG 59 ++ I +VDDD E+ SLL + L GF+ A + + L++ L+++D+M+P NG Sbjct: 4 IHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ + LR PVI LTA G DR++GLELGADDYL KPF REL+ARIR +LRR+ Sbjct: 64 LELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRRTE 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNP-GRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ + L+ +L+ R + DG + L+GTE+ LL + Q+ +V+SR Sbjct: 124 GGARRDQPETTP--LQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRVLSR 181 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + L + G+ P+DR+ID+ IS LR +L D KT+RG GY++ + Sbjct: 182 DELLERTQGRNAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLAT 233 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 129/230 (56%), Gaps = 12/230 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 +IL+V+D+ + ++ +LE GF + A D + A++ L++ DL+LLD M+P +GI Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 TLKALRQTH---QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 +K L++ PV+MLTARG E DRV GLE GADDY+ KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ +E+ L L+P + LE+ TEF LL+ H +V SR Sbjct: 124 SPMAVEE-------VIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 E L V G + DR +D+HI LR+ L +T+RG GY Sbjct: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 95/228 (41%), Positives = 136/228 (59%), Gaps = 9/228 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDT 62 IL+V+DD L +L++ LE EG+ V +A DG AL+L + + L++LD+M+P+ +G++ Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 LKALRQTHQT-PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR + P+IMLTARG + D+V GL LGADDYL KPFN EL+ARI A+LRR+H S Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + Q+ + V L ++ R + Q L+L+ EF +L L + GQ V RE + Sbjct: 125 KPSQH-------VSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKI 177 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 QEV G +R ID HI+ LR KL D + T+ G GY V Sbjct: 178 YQEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFV 225 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 131/230 (56%), Gaps = 8/230 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M +IL+++D+ + + LK+ LE EG+ VI A DGE+ L + + DL+LLDVMMPK +G Sbjct: 1 MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDG 60 Query: 60 IDTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 LR+ P++MLTA+G DRV GL+ GADDYL KPF+ EL+AR+RA+LRR Sbjct: 61 FALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRR- 119 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 Q TL + ++ +Q A + L T E+ +L LL++ G+ +SR Sbjct: 120 -----HQREKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISR 174 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 E V G P R +D HI++LR K+ + W KT+ G GY + Sbjct: 175 ERFLDVVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRL 224 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M KIL+ +D+ + S + L+ G+ VI A +G +ALD + D+LLLD+MMP+ +G Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60 Query: 60 IDTLKALRQTHQT-PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + R + +IMLTAR E D+V+GL +GADDY+ KPF+ EL+ARI+++LRR Sbjct: 61 FAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +++ L ++ G + G +E+T TE+ LL ++ QV+SR Sbjct: 121 ETLRRRKQPRE----LVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSR 176 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + L V G+ + +D++I LR+K+ + + +TL G GY Sbjct: 177 DELLDAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKW 226 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGID 61 +I +V+D+R + L+ LE EGF + +G +A + ++ + DL+LLDVM+P +G+ Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R+ P+IMLTA+ D+V GL++GADDY+ KPF EL+ARIR LR Sbjct: 66 ICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALR---KH 122 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 L+V LV+ P R E DG+T+ LT E++LL + ++ V++R+ + Sbjct: 123 VPDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQI 182 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 ++V G + +D++I LR KL D + + T+RG GY Sbjct: 183 LEKVWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGY 226 >UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae RepID=Q2S514_SALRD Length = 237 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 131/229 (57%), Gaps = 14/229 (6%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDTL 63 +L+VDD++++ ++ LE EG+ V A DGE+AL+ IDL++LD+M+P +G + Sbjct: 12 VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETASGKIDLIVLDIMLPGVDGYEVC 71 Query: 64 KALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR +T + P++ L+A+ E D++ GL LG DDYL KP + + LVA ++A+LRRS Sbjct: 72 RELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRRSGV 131 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 E S LEVD L + A +G+ L LT TEF LL L +H + +R+ Sbjct: 132 EE--------SSILEVDGLKIYEDEYRAELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQ 183 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L + + + +R +D HI NLR KL D +T+RG GY V Sbjct: 184 LLETIWKDAMMVTERTVDAHIKNLREKLGDFA---KHIQTVRGVGYRFV 229 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 8/226 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 IL+V+D+ ++ +L+ LE EG++V + H+G + LD + L+LLDVM+P +G++ Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 62 TLKALRQT-HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 L+ LR+T QTPVI+LTAR S D+V GL++GA+DY+ KPF EL+ARIRA LR Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR---- 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + ++ L D L +N +E + +ELT EF LL + +H QV++RE Sbjct: 121 -QNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQ 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + V G +D++I +R+KL D T+RG GY Sbjct: 180 ILSSVWGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGY 224 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 4/230 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGF-NVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KILLVDD++ + +L L+ E F ++ A +G + L L+ + D++LLDVM+P +G Sbjct: 18 KILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDIDGF 77 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R TP++ +TAR S+LD++ GL +G DDY+ KPFN E+ ARI LRR H Sbjct: 78 ELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQHM 137 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 +++ N + + L + L P + + + + T E LL L H ++ + E Sbjct: 138 TQEPNNGEKLN--LHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTAEQ 195 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L ++V G D+ + MHIS LR+K+ + + LRG GY + Sbjct: 196 LYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIP 245 >UniRef50_B4WSE4 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSE4_9SYNE Length = 243 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 129/232 (55%), Gaps = 5/232 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS---IDLLLLDVMMPKKN 58 IL+ +DD + L + LE + VI A DG+ AL + IDL++LDVMMPK + Sbjct: 8 QTILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLD 67 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G + LR T P+IM T GS DRV GLE+GA+DY+ KPF+ +EL+ARIR+ILRR+ Sbjct: 68 GFQVCQRLRATSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSILRRA 127 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ + +E+ V++ + A +G L LT EF L+ LLA G + SR Sbjct: 128 ARRQEHVSGVVHRSAIEIGQFVIDSSTRRAYIEGHNLRLTEIEFRLIELLASRPGHIFSR 187 Query: 179 EHLSQEVLGKRL--TPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + + G + +D+HIS LR KL + + T+RGRGY+ Sbjct: 188 GDILEALWGYDANSAADTKTVDVHISRLRIKLNETTHNPKYIVTIRGRGYMF 239 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 87/233 (37%), Positives = 128/233 (54%), Gaps = 7/233 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 N IL+ DDD +L S+L + E F V +A DG +AL L + D+++LD+MMP +G Sbjct: 4 NSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGF 63 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + RQ P+I L+A+ E DR++GL LGADDY+ KPF+ REL+AR+++ LRR Sbjct: 64 EVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRG 123 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 Q + E+ L ++ R E + LT TEF+LL +LA +V SR Sbjct: 124 EVLSQ-----VASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQ 178 Query: 181 LSQEVL-GKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L ++ + G +R ID HI NLR+KL + T+ G GY A+ Sbjct: 179 LLEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQGAN 231 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 131/229 (57%), Gaps = 7/229 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 MN IL+++D++ ++ ++K LE EG+ V +G +++ + IDL++LD+M+P +G Sbjct: 1 MNNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K LR+ + MLTA+ + D++ GL +GAD+YL KP + REL AR+ A+ RR Sbjct: 61 EEVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVG 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ + N + L+++ ++ G+ + LT EF +LY+LA + G+V +RE Sbjct: 121 CKKENVISFNDNK------LIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTRE 174 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + G DR+ID+HI NLR+K+ + + T+ GY Sbjct: 175 AIIERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 131/238 (55%), Gaps = 18/238 (7%) Query: 1 MNK-ILLVDDDRELTSLLKELLEMEG-FNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKK 57 M + I++++DD ++ ++ LE EG F+V + GE L +L+ +L+LLD+ +P Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 58 NGIDTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAI 114 NG + + LR+ T P+IMLTAR E D++ GL LGADDY+ KPF+ REL+ARI A+ Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 115 LRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 LRR+ + +D L ++ GQ + LT EF LL LLAQ G+ Sbjct: 121 LRRTEGTPSSVYDD--------GTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGR 172 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 V++RE+L V G R +D+HI +R+KL + +T G GY V A Sbjct: 173 VLTREYLLDRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRFVEAG 226 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 127/231 (54%), Gaps = 2/231 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M IL+++DD ++ +L+++ L+ ++ + GE+ L + D+++LD+ +P +G Sbjct: 1 MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 60 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 I+ + +R+ TP+ ++TAR E+DR++GLELGADDY+ KPF+ REL R+ RR Sbjct: 61 IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + N S + AL ++P R+ + + ++ EF +L L+A G+V SR Sbjct: 121 DKKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSR 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 E + + V G F+R ID H+ +R KL W +T+ G GY Sbjct: 181 EMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFT 231 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 5/233 (2%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKN 58 M K+L+++DD ++ L L+ + V A DG + ++++ ++ L+LLD+++P Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G + + +R + P+I L+ + D+V GL+ GADDYL KPF+ EL ARI+A LRRS Sbjct: 61 GYEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRS 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + N + L ++ + G + L E LL LL ++ V S Sbjct: 121 KMN---ANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSA 177 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 E + ++ G + + +HISNLRRK+ + KT+RG GY +A Sbjct: 178 EKIYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFSTA 230 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 128/232 (55%), Gaps = 2/232 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M +LLVDDD ++ SLL + V +A +G L+ ++IDL++LDVM+ ++G Sbjct: 1 MPHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +R + PVIMLTA DRV+GLE+GADDYL KPF+ REL+AR++A+LRR+ Sbjct: 61 FSLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTA 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASF-DGQTLELTGTEFTLLYLLAQHLGQVVSR 178 E P L L+ R+E D + L+G EF LL A+H +V++R Sbjct: 121 ELEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQRVLTR 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + L G FDR+ID+ +S LR KL D +T+R GY+ Sbjct: 181 DQLLDLARGLSHAAFDRSIDVQVSRLRHKLEDDPKKPSVIRTVRNGGYIFTP 232 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 132/231 (57%), Gaps = 13/231 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 +KI++++D+ ++ +LL L+ G++ VA DG++ L L+ + DL+LLD+M+P +G Sbjct: 3 HKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGT 62 Query: 61 DTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 D KA++ + P+IMLTARG E+DR+LG ELGADDY+ KPF+ REL+ RI+ +LRR Sbjct: 63 DVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRR 122 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + N + D L + DG LT TEF L ++ G+V+S Sbjct: 123 N------VNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLS 176 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 RE L G + R +D H+ LR+KL D W +T+RG GY M Sbjct: 177 REQLLSNAWGYEFEGYSRTVDTHVRRLRKKLGPYAD---WLETVRGIGYRM 224 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 91/232 (39%), Positives = 137/232 (59%), Gaps = 13/232 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 M ++LV+D+ EL L+++ LE GF V + HDG++A + L +L++LD+M+P+ +G Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +R+ P+IM+TAR E+DRVLGL +GADDY+ KPF+ +ELVAR++A+LRR Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLD 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + ND ++ +Q + ++L LT TEF LL L +HLGQV SR Sbjct: 121 RKAEPEQNDL---------FRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRA 171 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKL---PDRKDGHPWFKTLRGRGYLM 228 L + DR ID HI NLRRK+ D + H W + + G GY Sbjct: 172 QLLDHINPDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRF 223 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 125/233 (53%), Gaps = 8/233 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFN-VIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 KIL+VDD++E+ +LL+ +L+ EGF + G+ + + DL+LLD+M+P +G Sbjct: 11 KKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLDG 70 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +RQ P+ L+A+ +LD++LGL +G DDY+ KPF+ +E+ +++A RR+ Sbjct: 71 YSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + E+ N + + ++ + G L LT EF +L L ++ Q+ S+ Sbjct: 131 YKEKNPN------MYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKA 184 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L + V G+ D + +H+ +LR K+ D + T+RG GY + + Sbjct: 185 RLYEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLNTKG 237 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 97/231 (41%), Positives = 130/231 (56%), Gaps = 5/231 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M IL+V+D+R + LL L EGF I A GE+A+ LL IDL ++DVMMP +G Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS- 118 D +K LR+T PVI LTAR E DR+ GL LG DDYL KPF+ EL+ARI+A+LRR+ Sbjct: 61 FDFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTY 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + + + L ++ + LN + D + LT EF LL L +H GQV +R Sbjct: 121 QRNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTR 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 EHL V G +R +D HI LR KL + +T+ G GY +V Sbjct: 181 EHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYGN---VIQTVWGIGYKLV 228 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 92/234 (39%), Positives = 134/234 (57%), Gaps = 4/234 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 + IL+VDDDRE+ LL LE G +A +G Q +L+ S+DL++LD+M+P ++G+ Sbjct: 5 DHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGL 64 Query: 61 DTLKALR--QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + LR + PV+MLTAR E DR++GLE+GADDYL KPF REL ARIR++LRR+ Sbjct: 65 TLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRA 124 Query: 119 HWSEQQQNNDNGSPTLEVDALVLN-PGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + L L+ R G + L+G E+ LL + H +V++ Sbjct: 125 RMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVLT 184 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 R+ L G+ PFDR+ID+ IS LR++L D + KTLR GY+ +A Sbjct: 185 RDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSAA 238 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 132/233 (56%), Gaps = 4/233 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI--DLLLLDVMMPKKNG 59 +IL+VDDD + +LL L +GF+V V G + L DLL+LD+M+P ++G Sbjct: 15 PRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDG 74 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + L + PVIML+ARG ++DR++GLE+GADDY+PKPFN REL+ARIRA+LRR Sbjct: 75 LSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + V ++P ++A L+LT E+ LL + +V++R+ Sbjct: 135 MEPDARGKQ--DERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVINRD 192 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + + G + FDR+ID+ I+ LRRK+ + T+ G GYL + Sbjct: 193 QIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSG 245 >UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromonadales RepID=Q47ZA2_COLP3 Length = 238 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 139/233 (59%), Gaps = 5/233 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 + KILLV+DDR+L+ L+ + L EGF+V G+ + S DL++LDVM+P K+G Sbjct: 8 VKKILLVEDDRQLSDLVTDFLTSEGFHVKQEFRGDTVAKRVKLFSPDLIILDVMLPGKDG 67 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LR PV+MLTA+ ++ D+VLGLE+GADDY+ KP R L+AR+ A+LRR Sbjct: 68 FGVCRDLRPEFNGPVLMLTAKSTDFDQVLGLEIGADDYVIKPVEPRVLLARVNALLRRGD 127 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q + + L +N ++ + + ++LT EF LL+LLA G+V +R+ Sbjct: 128 LPNQSEEKGE----ITCGGLYINKASRKVTLQDENVDLTSQEFDLLWLLAGKAGEVQNRD 183 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 ++ + V+G+ DR++D+ IS LR+KL D D KT+ G+GYL V + Sbjct: 184 YIYKAVIGREYDGLDRSVDVRISRLRKKLHDSTDTPFRIKTIWGQGYLFVPDA 236 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 137/232 (59%), Gaps = 2/232 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 N IL+VDDD E+ LL + L GF+V A +G + +++ + ++L++LD+M+P ++G+ Sbjct: 5 NHILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGL 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R P+IMLTA+G+ +DR++GLE+GADDYLPKPF+ REL+ARI+ ILRR+ Sbjct: 65 SLCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRN 124 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEAS-FDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + + L+ ++ +G + L +++ +L L +H + +SR+ Sbjct: 125 DRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRPLSRD 184 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L + V GK DR+ID+ IS LR + +T+R GY++ S Sbjct: 185 FLVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLASQ 236 >UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=9 Tax=Gammaproteobacteria RepID=Q4ZQ24_PSEU2 Length = 247 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 133/231 (57%), Gaps = 4/231 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGE-QALDLLDDSIDLLLLDVMMPKKNGID 61 +L+V+DD+ L L + L+ G V + DG A ++ + DL++LD+M+P ++G Sbjct: 9 HVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGEDGFS 68 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +++R + P++MLTAR + D + GL+ GADD++ KP + R L+ARI+A+LRRS Sbjct: 69 ICRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRS--- 125 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 E Q L LV++ +EA Q++ELTG EF LL+LL + G+ +SRE + Sbjct: 126 EAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEI 185 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + G DR+ID+ IS +R K+ D KT+R +GYL V + Sbjct: 186 FTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEA 236 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 138/230 (60%), Gaps = 6/230 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M I LV+DD L+ L+ L+ F+V V G+ L + DL++LD+M+P +G Sbjct: 47 MPNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDG 106 Query: 60 IDTLKALRQTHQT-PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + + LRQ QT P++MLTAR D+VLGLE+GADDY+ KP R L+AR+R +LRRS Sbjct: 107 LQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS 166 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +E + +ND + + L ++ + S+ G+ +EL+ E+ LL +LA++ G+V++R Sbjct: 167 SVNEPRLDND----LILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNR 222 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + Q++ G DR++D+ IS LRRK D KT+ G+GYL Sbjct: 223 DRILQQLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 272 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 113/227 (49%), Gaps = 8/227 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 ++L+V+DD + + L GF V A DG ALD + DL++LD M+P +G + Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R P+I+LTA GS +R+ GLE GADDY+ KPF+ RELV R+++ILRRS Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + T + L+ G+ L LT EF LL L +H GQ SRE L Sbjct: 161 LTPEA------TFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQL 214 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + V G + + + LR K+ T+ G GY + Sbjct: 215 LKSVWGWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 298 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 132/229 (57%), Gaps = 9/229 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M +L+V+D+ + +++E LE G+ V VA +G++ L + DL+LLDVMMP +G Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ L+ R T Q PVI LTAR +ELD+VLGLELGADDY+ KPF+ EL+AR+RA LRRS Sbjct: 82 LEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRS- 140 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + L L L+P + G+ ++LT +EF L+ + G+V +R Sbjct: 141 ------SEPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRL 194 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 E L + +R ID+H+ NLR K+ +T+ G GY + Sbjct: 195 E-LLEQLQEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRL 242 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 298 bits (766), Expect = 8e-80, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 120/229 (52%), Gaps = 9/229 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGIDT 62 IL+V+DD + ++ LE G A DG +A L L DL++LD M+P +G+ Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 63 LKALRQ-THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + R+ + PV+MLTAR E RV L GADDYL KPF+ +ELVAR++A+LRR++ S Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + L+++ ++ G+ ++L EF LL LA H G+V SR+ L Sbjct: 134 GYRDCSPKN-------GLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDEL 186 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + V G R ID+H+ LR KL + T+ G GY Sbjct: 187 LERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAG 235 >UniRef50_A9KX94 Two component transcriptional regulator, winged helix family n=7 Tax=Gammaproteobacteria RepID=A9KX94_SHEB9 Length = 235 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 135/232 (58%), Gaps = 1/232 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGI 60 KIL+V+DD L ++E L EG+ V + +G A+ +L+ L++LD+M+P+K+G+ Sbjct: 3 TKILIVEDDLPLAESIQEYLNYEGYQVEIISNGVLAVSRILEWQPALVILDIMLPQKDGL 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R + ++M TARG E+D+++GLE+GADDYL KP R L+A+I+A LRR Sbjct: 63 SVCREVRPQYNGYILMFTARGEEIDQIVGLEIGADDYLLKPVKPRMLLAKIKAFLRRDRL 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 +E N S + L +N ++ + ++LT E+ LL LA++ G ++SR Sbjct: 123 AESIAENQQVSEYISFGQLAINTQKRSVTLADVAIKLTDGEYDLLITLAKNAGNILSRND 182 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + ++V G +R +D HI LR+KL D KT+R +GYL VS+ Sbjct: 183 IVEQVKGYYYDGIERGVDNHICQLRKKLGDDARNPFKIKTIRSKGYLFVSSG 234 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 125/231 (54%), Gaps = 11/231 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGI 60 + +V+DD ++ L++ LE GF V G + + +L LLD+M+P +G+ Sbjct: 3 QTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADGL 62 Query: 61 DTLKALRQTHQ---TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + + +R + TPVI LTA+ SE D++ GL+LGADDY+ KPF+ REL+ARI+A+LRR Sbjct: 63 EICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLRR 122 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + +V++ G + G + T TEF LL LA+H G+V + Sbjct: 123 FERPLPPA-------VVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFT 175 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 R+ L V + R++D+++ +R K+ + + + KT+RG GY Sbjct: 176 RDQLLDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRF 226 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 123/227 (54%), Gaps = 9/227 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 +IL+VDDD L ++ +L +GF + DG QAL++ S DL+LLD+M+P +GI Sbjct: 32 ARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDGI 91 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R P++MLTA+ D V GLE GADDY+PKPF ELVAR+RA LR Sbjct: 92 EVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR---- 147 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + TL + + ++ + G+ + LT EF LL LA+ QV +RE Sbjct: 148 ----PGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTREL 203 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 L ++V G R R +++H+ LR K+ + T+RG GY Sbjct: 204 LLEQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 138/228 (60%), Gaps = 9/228 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 IL+ DD++++ L + +E EG+ + A +G++ LD+++ +DL+LLDVMMP+ +G++ Sbjct: 7 TILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGME 66 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ LR + + PVIM+TA+ E DRV GL GADDY+ KPF+ +EL+ARI A +RR++ Sbjct: 67 ALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRNYGY 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 N+D L+ ++ +N ++ DG+ + LT EF LL +H QV +RE L Sbjct: 127 ----NDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQL 182 Query: 182 SQEVLGKRL-TPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 V G T R +D H+ +R K+ G +F+T+ G GY++ Sbjct: 183 LDHVWGVNYTTGGHRTVDTHMKTMRFKMG---SGGDYFRTVYGVGYVL 227 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 133/230 (57%), Gaps = 1/230 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M+ IL+V+D+ ++ SLL + L G+ + H+G + + + + DL+LLD+M+P K+G Sbjct: 1 MSHILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +++ +IM+TAR E+DR+LGLELGADDY+ KPF+ RE+VAR++ ILRR + Sbjct: 61 LTICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRIN 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 N N + + + LN +A+ + +ELT EF LL +LA G++ SR Sbjct: 121 PPLTTGINTNIAKQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRIYSRS 180 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L V +R ID HI LR+KL + + +++ GY +V Sbjct: 181 QLIDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKLV 230 >UniRef50_A0LCI2 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A0LCI2_MAGSM Length = 231 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 110/230 (47%), Positives = 142/230 (61%), Gaps = 6/230 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 MN ILLVDDD++L ++L E L EGF+ + H G +AL L + L+LDVM+P NG Sbjct: 1 MNTILLVDDDKQLCAMLAEYLYEEGFSCDLCHSGTEALNRALQSPYEALVLDVMLPGING 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D L+ LRQ + PVIMLTARG E D ++GLE+GADDYL KP N R L AR+RA+LRR+ Sbjct: 61 FDLLRKLRQQTEVPVIMLTARGEETDSIVGLEIGADDYLSKPCNPRVLAARLRAVLRRTG 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S L AL L P ++ +ELT EF +L L + GQVV +E Sbjct: 121 GERA-----TSSEQLNQGALTLYPMARKVMLGAVEIELTSAEFNILEQLLREAGQVVDKE 175 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 LSQ+ LG++ P+DR++DMHIS+LR+KL D P TLRG GYL Sbjct: 176 RLSQKGLGRKWMPYDRSVDMHISSLRKKLAATGDSSPRIHTLRGSGYLYA 225 >UniRef50_D1U371 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U371_9DELT Length = 239 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 12 ELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDTLKALRQTH 70 +L +LL E LE GF V G+ A++ + D+ L++LDVMMP +NG+D L+ +R Sbjct: 15 KLCALLTEYLEGYGFKVRTLPSGDGAVEAVGRDTPSLVILDVMMPGRNGLDVLRDIRAGS 74 Query: 71 QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH---WSEQQQNN 127 + PVIMLTA+G + DR++GLELGADDY+PKPFN REL+ARI+A+LRR+ S + Sbjct: 75 KVPVIMLTAKGEDTDRIVGLELGADDYMPKPFNPRELLARIKAVLRRAETVGTSGGAPSA 134 Query: 128 DNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLG 187 + +E L LN R D LEL+ TEF LL L ++ ++R+ L G Sbjct: 135 AQRAVLVEAGGLALNVSRHVLLVDEDELELSATEFRLLRALMENPDTALTRDELMSLAWG 194 Query: 188 KRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + + +DR+ID+H+S LR L +T+ G GY+ V Sbjct: 195 RDFSAYDRSIDVHVSKLRSLLRPYAGHDKRIRTVWGTGYMFVGT 238 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 124/229 (54%), Gaps = 6/229 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFN-VIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 IL+VDD++ + ++K +LE EG+ ++ A E+A+ ++ + +DL++LDVMM +G + Sbjct: 6 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +R+ P+ LTAR S+ D++ G +GADDY+ KPFN EL ARIRA L+R++ S Sbjct: 66 ACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQS 125 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 ++ +N T D +P E G+ + + LL +H V+S++ + Sbjct: 126 KETSSNQ----TYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQI 181 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 ++V G + + +HI LR K+ + T+RG GY + Sbjct: 182 YEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIP 230 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 101/231 (43%), Positives = 136/231 (58%), Gaps = 3/231 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNG 59 M IL+VDDDRE+ LL LE + F V D +A L+ L++LD+M+P ++G Sbjct: 27 MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESG 86 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ID + LR Q P+IMLTA G E DR++GLELGADDY+ KPFN RELVARIRA+LRR Sbjct: 87 IDFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRVG 146 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQE-ASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +E ++ + VL R+ G + LTG E+ LL L +V++R Sbjct: 147 ENETP-GRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTR 205 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + L + G++ PFDRAID+ IS LRRKL D KT+RG GY++ Sbjct: 206 DMLLDLLRGRQAGPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVLA 256 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 7/229 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 KIL+VDD+ + +L++ L +G+N++ A +G++AL + S L++LDVMMP+ +G Sbjct: 3 TKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGW 62 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +R+ + P++MLTAR D+V GL++GADDYL KPF EL+AR+ A+LRR+ Sbjct: 63 EVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRA- 121 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 N + L L ++ + + LT EF LL LL + QV +R+ Sbjct: 122 ----VVNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L ++ G +R +D HI ++R KL +T+ G GY + Sbjct: 178 QLLLKIWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKL 226 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 13/228 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL--DDSIDLLLLDVMMPKKNGI 60 K+L+VDD+ + L+K+ L ++V+ A +GEQA+D+ I L++LDVMMPK +G Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 K +R+ + P+IMLTA+ E D +LG ELG D+Y+ KPF+ + LVAR+ AI+RRS Sbjct: 65 QVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRS-- 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 T+E+ +V++ E D +EL+ EF LL + G +SRE Sbjct: 123 ------IQTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREK 176 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + V R ID H+ LR K+ D+ D + KT+ G GY Sbjct: 177 ILNNVWNYDYFGDARTIDTHVKKLRSKMGDKGD---YIKTIWGMGYKF 221 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 10/229 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 + IL+VDDD + L+ LE EGF A DG AL +++ +D+++LD+MMP +G Sbjct: 31 IPNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDG 90 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D LR+ + P++MLTA+G +V G LG DDYL KPF+ ELV R++A+L+R Sbjct: 91 FDVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQ 150 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + Q +++V ++LN E + QT+ L EF LL+ L G+ SRE Sbjct: 151 ITVSQ--------SIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSRE 202 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L ++V G +R +D+HI+ LR K + K KT+RG GY + Sbjct: 203 QLIEDVWGYDFEGNERTLDVHINRLREKFQEEKSKFS-IKTIRGLGYRL 250 >UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2J4_9FIRM Length = 257 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 84/255 (32%), Positives = 129/255 (50%), Gaps = 28/255 (10%) Query: 1 MNK--ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKK 57 M+K IL+VDD+ E+ ++ LL EGF V A +G QAL L++ DL++LD+MMP Sbjct: 1 MDKTCILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 NG T + +R+ P++ L+AR E D+ LG G DDYL KPF+ EL++R +A++RR Sbjct: 61 NGYQTCRKIRELSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRR 120 Query: 118 SH------------------------WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQ 153 + +D+ L L +N +E +GQ Sbjct: 121 YQVYKGKNESGNQSINSASVNPTAEPIASTSNASDSRHRILLFHDLEINQTVREVHKNGQ 180 Query: 154 TLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKR-LTPFDRAIDMHISNLRRKLPDRK 212 L+LT TE+++L LL + Q S + L + V + + + +HI NLR K+ D Sbjct: 181 LLDLTETEYSMLELLVANRHQTFSAQRLFESVWQEPYYYGANNTVTVHIRNLRSKVEDHP 240 Query: 213 DGHPWFKTLRGRGYL 227 KT+ G+GY Sbjct: 241 GNPELIKTVWGKGYR 255 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 135/226 (59%), Gaps = 3/226 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 ILLV+DD+ + ++ + L E ++V A DG A+++ + S D++LLD+M+PK +G + Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 LK +R PVI+ TA+ S+ D++LGL LGADDY+ KPF+ EL+ARI+A +RR+ Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 +N+ ++ L++N + S G L LT TEF ++ LLA + G+ S+E L Sbjct: 123 SSRNSQ--DMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLY 180 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + + ++ HI+ LR KL D + + + KTL G GY M Sbjct: 181 NAIWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKM 226 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 126/231 (54%), Gaps = 3/231 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGF-NVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 IL+VDD+ + ++K +L EGF V+ A E+ALD++ D++ L+LLDVMMP + G Sbjct: 4 ATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQTG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D +R+ P+ LTA+ S+LD++ G GADDY+ KPFN EL+ARI+A L+R++ Sbjct: 64 FDVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKRTY 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ + S E + + +P E DG+T+ + LL H +V+S++ Sbjct: 124 I-HKEVAAASVSSAYEYERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLSKD 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + ++V G + +HI LR K+ + T+RG GY V Sbjct: 183 QIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVP 233 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 129/228 (56%), Gaps = 4/228 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 K+L+VDD+ ++ ++K LE EG V A+DG Q L++ + + DL++LD+M+P G Sbjct: 5 KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGE 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R+ + P+IMLTA+ E + GL +GADDY+ KPF+ REL+ARI AI RR Sbjct: 65 EICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRR--- 121 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ + + + LV++ ++E +G+ + LT ++ +L L ++ + +RE Sbjct: 122 LNEEVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTREE 181 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L LG +DR +D H+ N+R+K+ + T+ G GY Sbjct: 182 LISTALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRF 229 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 129/230 (56%), Gaps = 5/230 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 +K+L+++D+ L LL L EG++ V G L L + DL++LD+M+P NG Sbjct: 3 HKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGF 62 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + L LRQ +TP+I+LTAR +E + V GL+ GADDY+ KPF EL+AR+ A+LRR+ Sbjct: 63 EILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQ 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + V L + P + E +G+T+ L EF +L L Q G V++R+ Sbjct: 123 QDD-SVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRD 181 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L V G R +D+H+S+LR+KL +++RG GY +V Sbjct: 182 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLEL--GQSVQIESIRGVGYKLV 229 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 132/236 (55%), Gaps = 5/236 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M IL+VDD++ + +++ LE G+ VI A DG AL+L + DL++LD++MP +G Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60 Query: 60 IDTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 + L++ T + P+IML+AR ELD+VLGLE+GADDY+ KPF+ RELVAR+ A LR Sbjct: 61 YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 R E D+ + + L+++ G+ L EF LLY LA G+ Sbjct: 121 RDKKEEFIIPRDSKNIIMR-GKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYF 179 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 SR L ++ ++ R +D+HI +R+KL + +T RG GY + + Sbjct: 180 SRYFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFIETN 235 >UniRef50_C9XJX9 Two-component system response regulator n=108 Tax=Firmicutes RepID=C9XJX9_CLODC Length = 222 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 13/228 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 + IL+++DD + L+ E L EG+ V A+DG + + S DL++LD+MMP +G Sbjct: 3 SSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLDGY 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 K +R++ P+I LTA E D++ G +L DDY+ KPF+ L+ R+ AILRRS Sbjct: 63 GVCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRS-- 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 N + + L L+ A DG+ +ELT EF +L L + QV++RE Sbjct: 121 -----NKTINDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREG 175 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + G R +D HI N+R+K+ P+ KT++G GY + Sbjct: 176 LLDSIWGYDYYGDTRIVDAHIKNIRKKI-----SLPYIKTVKGIGYTL 218 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 8/232 (3%) Query: 1 MNK---ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPK 56 M + IL+ DD++++ +L LE GF V+ +G + L L+ L++LD+M+P Sbjct: 1 MKRHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPD 60 Query: 57 KNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 G + A+R P++MLTA+ + DR+ GL++GADDY+ KPFN E+VAR++AILR Sbjct: 61 IPGEEVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 R+ + LV++ Q G ELT TE+ LL +L++H +V Sbjct: 121 RTMLDHPLADRLE----YRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVF 176 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 SRE L + V G R ID H+ NLR K+ D + +T+ G GY Sbjct: 177 SREELIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRF 228 >UniRef50_C1SP47 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SP47_9BACT Length = 234 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 89/230 (38%), Positives = 133/230 (57%), Gaps = 4/230 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 + IL+VDDD +L +L L ++V V ++ L S +++LD+MMP NG Sbjct: 3 HNILIVDDDIKLCKMLSRYLRDYSYSVDVINNPLMLEKYLKSSKPSVIILDIMMPHINGF 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D K LR+ PVIML+ARG DR+ GLE GADDYL KPF REL+ARI A+++R Sbjct: 63 DLCKKLRKNSDIPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKRFEH 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 SE NN + + L ++ + +A+ DG LELT TEF +L L+ ++ ++SR+ Sbjct: 123 SEDTANN---AAVYQYGELSIDTDKYKATMDGSNLELTKTEFIILSLMVRNPYILLSRDR 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L E+ G ++R +D+ +S LR KL D + KT+ G GY+ ++ Sbjct: 180 LYNELTGFDCDAYNRTVDISVSRLRTKLNDDPKSPKYIKTVWGEGYMFIA 229 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 138/231 (59%), Gaps = 7/231 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 K+L+VDD+ ++ L++ LE G+ V +G + L L+ ++ DL++LD+M+P G+ Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGM 69 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D K +++ + P+IM+TA+ E + VLGLELGADDY+ KPF+ REL+AR+R++LRR+ Sbjct: 70 DLCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKE 129 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 E+++ + + + + LN +A + ++LT E+ +L L + G +R+ Sbjct: 130 GEEEEQFEGN---ITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRDK 186 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L V GK + DRA+D++I LR KL D K +T+RG GY A Sbjct: 187 LLDRVWGKDIYVTDRAVDVNIKRLRDKLGDEK---ERLETIRGIGYRFNEA 234 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 132/229 (57%), Gaps = 4/229 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 +L+VDDD+++ LL E L+ G V +AHDGE+ D++ + +DL++LDVM+P K+GI Sbjct: 81 AHVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSGI 140 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R+ + P+IMLTA D++LGLE+GADDYL KPF+ REL+ARIRA+LRR Sbjct: 141 EICQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRLEN 200 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEAS-FDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + S L+ R+ + +ELT EF LL + ++SR+ Sbjct: 201 NRAPSRPVTHS--YRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHILSRD 258 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + + + +DR++D+ IS LRRKL D T+R GY Sbjct: 259 QLMEMAGNQAVYGYDRSVDILISRLRRKLNDDSRSPKLILTIRNGGYQF 307 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 123/227 (54%), Gaps = 6/227 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGIDT 62 IL+V+DD + + L L EG+ V+ A DG L LD+S DL++LDVM+P+ NG + Sbjct: 8 ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67 Query: 63 LKALRQT-HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 LK LRQ TPV++L+A+G E D+++GL LGADDY+ KPF +EL+ARI+A+LRR + S Sbjct: 68 LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 P + + ++ + + +ELT EF LL H G+ +RE L Sbjct: 128 AGA----GSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREEL 183 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 G R +D + LR K + F T+RG GY Sbjct: 184 LSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRF 230 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 131/228 (57%), Gaps = 7/228 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 + +V+D+ + +LK LE G+ V A +G++ L + + + D ++LD+M+P G + Sbjct: 4 TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEE 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R T P++ML+A+ SE DR+ G+ +GADDY+ KPF+ RE++ R+ AILRR+ Sbjct: 64 ICKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTL 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + + +++ ++E + +T+ LT EF ++ ++A+H G+V SR L Sbjct: 124 NKMEIFSFNKKEI-----IIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADL 178 Query: 182 SQEVLGKR-LTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 Q++ ++R+ID+HI NLR+KL + T+ G GY Sbjct: 179 LQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKF 226 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 131/230 (56%), Gaps = 7/230 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 MN+IL+ +D+ + S + L+ GF+V A +G +A+ D + D++LLDVMMP+ +G Sbjct: 1 MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDG 60 Query: 60 IDTLKALRQ-THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + A+R +IMLTAR E D++ GL GADDY+ KPF+ ELVARI+A+LRR Sbjct: 61 FEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRV 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +++ S L+ ++ ++ + GQ+++LT TE+ L+ L Q+ V+SR Sbjct: 121 EKVKRKD-----SKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSR 175 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + L V G + +D++I LR+K+ D + +TL G GY Sbjct: 176 DALLDAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKW 225 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 136/229 (59%), Gaps = 7/229 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGI 60 +ILL +DD L L + L+ EG+ V DG+ AL + + S DL+LLDVM+P+++G Sbjct: 3 PRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGF 62 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K LR++ P++MLTARG +D+V+GL+ GADDYL KPF EL+ARI A+LRR+ Sbjct: 63 DVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRA- 121 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + T ++ + ++ R E + G+ + L+ E+ LL L H G+ V+RE Sbjct: 122 ----PVRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTRE 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L +V G T R +D+H++ LR+KL + + +T+RG GY + Sbjct: 178 DLLTQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 134/235 (57%), Gaps = 13/235 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 IL+VDD+ + ++ LEM G+ + A + +QA ++D DL+LLD M+P +GI Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 61 DTLKALRQTH---QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + + L++ P+IMLTA+G E +++ GLE+GADDY+ KPF+ RELVAR++A+LRR Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + + + +EV L+L+P + DG+ E+ TE+ LL H + + Sbjct: 124 TGPGDSEAP-------IEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYT 176 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 R L +V G + +R +D+HI LR+ L + + +T+RG GY + S Sbjct: 177 RGQLLDQVWGGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRFSTKS 229 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 129/229 (56%), Gaps = 4/229 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 MNKIL++DDD+EL +L+K ++ E + G++ L L + L++LDVMMP +G Sbjct: 18 MNKILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 77 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +TL+ +R+ + P++M T++ + +V GL GADDYL KPF+ EL+ARI +++RR Sbjct: 78 FETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYT 137 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 QQ L D L ++ + A+ T EL EF LL A+H G++++++ Sbjct: 138 RFNQQAGAIQK---LNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKILTKQ 194 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + +EV G+ D I IS LR+KL + +T++G GY Sbjct: 195 QIYEEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRF 243 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 93/231 (40%), Positives = 137/231 (59%), Gaps = 4/231 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 ILLV+DDRE++ L+ L V VA D + LL D +DL++LD+M+P ++G+ Sbjct: 18 PHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGEDGL 77 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR P++MLTA+ E+DR++GLELGADDYL KPFN REL+ARIRA+LRR Sbjct: 78 SICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRRGSG 137 Query: 121 SEQQQNNDNGSPTLEVDALVLNPG-RQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + +++G L VL+ G RQ + DG + LT EF LL+ + G+V+SR+ Sbjct: 138 GSAR--DEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLSRD 195 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L G+ PF+R+ID+ +S +R+K+ KT+R GY+ Sbjct: 196 QLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTP 246 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 133/227 (58%), Gaps = 4/227 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGID 61 IL+ DD+R++ S+L+ LE G+NV+ A DG+QALD LL +D+ LLD+MMP+ +G Sbjct: 4 TILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDGYQ 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 LK LR+T PVI+++A+G + +++LGL LGADDY+ KPFN E VAR+ +RR Sbjct: 64 VLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLKGM 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 Q + L L L+ + +G+ +ELT E+ ++ + QH G+V +++ + Sbjct: 124 AAAQPK-RPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQQI 182 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + + ++ + +S LR KL D KT+RG GY + Sbjct: 183 YECGWDEDYVAAENSVMVCMSRLRSKLGDDGQEA--IKTIRGLGYRL 227 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 132/229 (57%), Gaps = 6/229 (2%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKN 58 M KILLVDDD L + LL EG+ V+ A DG +AL+ LD + DL++LD+MMP+ + Sbjct: 1 MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLS 60 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G + LK +R+ PVI+LTA+ +D+V+GLELGADDY+ KPF+ +EL+ARI+AIL Sbjct: 61 GFEVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL--- 117 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ L + L ++ + DG+ L+LT TEF +L LL + GQ +R Sbjct: 118 -RRLGRREGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTR 176 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 +S+ V R ID+HIS LR K+ +T+ GY Sbjct: 177 AQISEAVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_B8JG70 Two component transcriptional regulator, winged helix family n=2 Tax=Cystobacterineae RepID=B8JG70_ANAD2 Length = 238 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 98/230 (42%), Positives = 133/230 (57%), Gaps = 6/230 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGID 61 ++L V+DD L +L LE G V DG+ L + L D+++LD+M+P+K+G++ Sbjct: 10 RVLFVEDDERLAALTTRYLESHGHAVTWVADGQLGLAEALKGQHDVVILDLMLPRKSGLE 69 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR P+IMLTA G E DRVLGLE GADDYL KPF+ REL+AR+RA++RR S Sbjct: 70 VCRELRARLPVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRRGRGS 129 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + V L L+P AS G+ L LT EF LL +LA+ G+V++RE L Sbjct: 130 LGPPRE-----VIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLTREQL 184 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 G FDR+ID HIS LR KL D KT+RG GY++ + Sbjct: 185 LDLTKGSADEAFDRSIDAHISRLRHKLGDDPRRPALLKTVRGAGYVLAAG 234 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 295 bits (758), Expect = 7e-79, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 12/229 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNG 59 M +L+V+D++ + ++ E + G A DG AL +L + DL++LDVMMP +G Sbjct: 20 MANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDG 79 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 K R+ P+IMLTA+G E D++ G E GADDY+ KPF+ + L+A+ A+LRRS Sbjct: 80 FSVCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSS 139 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + L V +++ P + DGQ + LT E+ LLY L + GQ+ +R+ Sbjct: 140 PAPLDA--------LNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARD 191 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + G R +D HI LR+KL D TL GY Sbjct: 192 QLLNRIWGYDFEGTTRTVDTHIKTLRQKLGDEG---KHIVTLIRSGYKF 237 >UniRef50_Q020N6 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q020N6_SOLUE Length = 250 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 96/229 (41%), Positives = 141/229 (61%), Gaps = 8/229 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGIDT 62 ILLV+DD ELTSL+ + GF V AHDG L ++ S DL++LDVM+P +G + Sbjct: 27 ILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGFEV 86 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ LR+ TPVIMLTAR S+ DRV GL GADDYLPKPF EL+ARIRA+LRR+ ++ Sbjct: 87 LRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRTGHTD 146 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 +E L ++P + G+ +E+T EF +L +L + G+ V+R+ L+ Sbjct: 147 AAPPQ-----IVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDELT 201 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + + TP++R++D+HIS+LR+KL +T+RG GY ++ Sbjct: 202 AVLYQRPATPYERSLDVHISHLRKKLERDDRS--VIRTIRGVGYQFMAG 248 >UniRef50_P54443 Uncharacterized transcriptional regulatory protein yrkP n=4 Tax=Bacillus RepID=YRKP_BACSU Length = 231 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 135/230 (58%), Gaps = 3/230 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 +IL+V+DD ++ LL+E L G+ V+ A DG++AL L++DS+DL++LD+MMP +GI+T Sbjct: 4 RILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLVNDSLDLVILDIMMPGISGIET 63 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R++ P++ LTAR S LD+ GL G DDY+ KPF++ EL AR+ A LRR + Sbjct: 64 CQHIRKSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTIYQ 123 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 +++ + L L ++ E + + ++L+ E+ +L LL ++ S +++ Sbjct: 124 EKKEQEE--TFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNIY 181 Query: 183 QEVLGKRL-TPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + V G+ + + +HI LR K+ D + KT GRGY ++ Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRFGAS 231 >UniRef50_A6TSQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A6TSQ9_ALKMQ Length = 236 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 142/232 (61%), Gaps = 5/232 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 K+L+VDD++ + L++ L GF +I ++G A+++ L + DL+LLD+M+P +G+ Sbjct: 4 TKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDIDGL 63 Query: 61 DTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + + +R + HQTP+IMLTA+ E D+V+GL LGADDY+ KPF REL AR+R +LRR Sbjct: 64 EVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLRR 123 Query: 118 SHWSEQQQNNDNGSP-TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 S+ ++V + ++ R + +E T +EF +L LA+ L V+ Sbjct: 124 VMDSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESLEHVL 183 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 SR L +EV G++ TP R +D+HI N+R+KL D D + +T+RG GY M Sbjct: 184 SRSLLLEEVTGEKSTPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYKM 235 >UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleidia extructa W1219 RepID=D2MMT6_9FIRM Length = 232 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 132/228 (57%), Gaps = 4/228 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M++ILLVDD++++ LK L E F ++ A +G++AL+++ + +DL+L+D+MMP +G Sbjct: 1 MDRILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K +R+ P+I L+A+G D++ GL +GADDY+ KPF+ E++ARI+A LRR Sbjct: 61 VKATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFK 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 QQ + + + LN + + DG+ + LT E+ +L Q+ ++++ + Sbjct: 121 ELGSQQKDQ---EVYMLGGITLNDSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQ 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 + QEV + + I +HI +LR K+ + K + GRGY Sbjct: 178 DIYQEVWKEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYK 225 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 12/227 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGID 61 I +VDDD + +++ L+ EG+ E+A+ L ++ DL +LD+M+P NG + Sbjct: 5 HIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGMNGYE 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R +TP+IM++AR E+D++LGLELG+DDYL KPF+ RELVAR+ L+R Sbjct: 65 FCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWKQM 124 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + ALVL+ ++ G+ +E+T EF +L LL++H + SR+ L Sbjct: 125 KSHAEQTA------ISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDEL 178 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + G DR +D I +R+KL +T+ G GY + Sbjct: 179 LSLIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRL 220 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 135/229 (58%), Gaps = 8/229 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGI 60 I +V+D+R+L+ LLKE LE F V G++ + + DL+LLD+M+P +G+ Sbjct: 11 KNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGADGV 70 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R P+IM+TA+ E+DR+LGLE+GADDY+ KPF+ RE+VAR++A+LRR Sbjct: 71 TLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRRGG- 129 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + + + L+L P + G+ L++T +EF+LL+ H G+V SR+ Sbjct: 130 ------EEPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSRDE 183 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L ++ G+ +DR ID HI NLR+KL + G +++ G GY + Sbjct: 184 LIAKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKFI 232 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 132/232 (56%), Gaps = 4/232 (1%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKN 58 MN KIL+++DD E+ ++++ L E ++V + G++ L+ D+ DL++LD+M+P+ + Sbjct: 1 MNGKILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEID 60 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G K +R P+++L+A+ E+D+V GL+LGADDY+ KPF+ EL AR+ ++R Sbjct: 61 GFTVCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRY 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + D+ S + L + + D + +ELT EF+LL +LAQ+ +V ++ Sbjct: 121 KGYN--KKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTK 178 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + L + V + + I +H+ LR+KL D + +T+ G GY + Sbjct: 179 KELYENVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFIG 230 >UniRef50_B1YJZ1 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YJZ1_EXIS2 Length = 220 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 135/233 (57%), Gaps = 14/233 (6%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M IL+ +D+ ++ LL ELLE G++V A +G +AL L + DL++LD+MMP +G Sbjct: 1 MTHILIAEDEFDIRELLTELLESSGYHVTSAANGMEALKLHQSATFDLMILDIMMPYLDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +R+T QTP+I LTA E ++V G +LG DDY+ KPF+ R L+ RI A++RR Sbjct: 61 FEVAQQVRKTSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIRRIR 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++++Q L + L P G + LT EF +L+LL ++ G+V+ RE Sbjct: 121 TNDEEQ--------LSFREITLFPASYNVLISGNAVILTLKEFQILHLLLENPGRVLERE 172 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L Q++ G R +D HI NLR+K+ P+ +T++G GY + + + Sbjct: 173 QLIQQLWGFDAFGDTRFLDTHIKNLRKKI-----NVPYIQTVKGVGYKLEATN 220 >UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostridium RepID=A7GIT8_CLOBL Length = 230 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 128/227 (56%), Gaps = 5/227 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+VDDD+ + L+ L EG+ V +++GE+AL+ ++ + DL+L+D+MMPK +G + Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKIDGFE 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +K +R+ P+I LTA+ ++ D++ G G DDY+ KPF+ EL R+ AIL+R Sbjct: 64 AIKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVSTG 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 ++N D ++V L LN + LT EF +L LLA++ G+V L Sbjct: 124 VVEENED----LIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSEL 179 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + V G+ D ++ HI NLR KL D + KT+ G GY + Sbjct: 180 YERVWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKI 226 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 137/239 (57%), Gaps = 15/239 (6%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD---DSIDLLLLDVMMPKKNG 59 KIL+V+D++ ++ ++ + E ++ A+DG +A++ DS D++ LD+ +P +G Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 60 IDTLKALRQTHQT-PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + + +R+ + P+IMLTAR SE D+VLGLELGADDY+ KPF+ L+ARI+A+ RR+ Sbjct: 62 MQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 121 Query: 119 HWSEQQ--------QNNDNGSPTLEVDALVLNPGRQEASFDGQTL-ELTGTEFTLLYLLA 169 ++Q + DN ++ D ++ +EA + + +LT EF LL LA Sbjct: 122 ELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLA 181 Query: 170 QHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 ++ QV SRE L + V + +R +D HI LR+K+ + G +T+ G GY Sbjct: 182 KNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEV--GPQVIQTVWGVGYKF 238 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 135/228 (59%), Gaps = 8/228 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 KIL++DDD+ ++++++ L EG+ V VA+ G++ L+L L+D DL++LD+MMP +G+ Sbjct: 3 TKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGL 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + K LR+ P++M+T S DRV GLE GADDYL KPF ELVAR++A+LRR Sbjct: 63 EVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 +++ L LV++ ++A +T+E + TEF LL +H QV++RE Sbjct: 123 KKKE------DEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTREL 176 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L V G +++++ LR KL + + T+RG GY++ Sbjct: 177 LMDRVWGFDFRGESNVLEVYVGYLRSKLEAQ-NEPRLIHTVRGAGYVL 223 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 131/232 (56%), Gaps = 12/232 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 ++L++DDD ++T++L+ L EG+ V VA+DG + +++ ++ +LL+LD+M+P +G Sbjct: 3 ARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGW 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + R+ + TP+++L+AR +V GL LGADDYL KPF EL+AR++A+LRR Sbjct: 63 EICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR--- 119 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + ++ L ++ +E G L LT EF LL H QV++RE Sbjct: 120 ------RITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQ 173 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + V G T ++++I+ LR+K+ D G T+RG GY++ Sbjct: 174 IIDRVWGLDFTGGSNVLEVYINMLRQKIEDY--GSRIIHTVRGVGYVLKEQG 223 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 5/231 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 IL+V+DD + +L +L+ GF G + + DL++LD M+P ++G Sbjct: 13 AHILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGEDGF 72 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR P++MLTA ++DR+LGLELGADDY+ KPFN REL+ARI++ILRR+ + Sbjct: 73 SICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRASY 132 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEAS-FDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + Q+ + ++P ++ DG + +T EF +L + +V++RE Sbjct: 133 AHHQEEALGP---MMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTRE 189 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L P +R+ID HIS +R+K+ + KT+R GYL S Sbjct: 190 QLLSMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFAS 240 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 132/228 (57%), Gaps = 8/228 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 ++L+V+D+ ++ +LK+ L EG+ V + G++ + + ++ ++LLD+M+P+ +G Sbjct: 5 QVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRLDGKT 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ P+IM+TA+ E+DR++G ELG DDY+ KPF+ RE+VAR+ A+LRR+ Sbjct: 65 VCREVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRRTF-- 122 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + L + + LN + A +G L LT +EF + +L + +V +R L Sbjct: 123 -----KKSSDDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQL 177 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 ++V G ++R ID HI NLR+K+ G ++ G GY +V Sbjct: 178 IEKVQGYNYDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKIV 225 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 134/231 (58%), Gaps = 4/231 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 ++L+++D+ L+ LL L EG+ VIV G+ + L DL+LLD+M+P NG Sbjct: 3 QRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGF 62 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + LR +TPVI+LTA+ +E + V GL+ GADDY+ KPF EL+AR+ A+LRRS Sbjct: 63 EIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRST 122 Query: 120 WSEQQQNN-DNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 E+++ + + + + AL + P + E + +G+ + L EF +L LA+ G V++R Sbjct: 123 GKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTR 182 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + L V G R +D+H+S+LR+KL ++RG GY +V Sbjct: 183 DDLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDP-QSVHIDSIRGVGYKLV 232 >UniRef50_C6CSH8 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSH8_PAESJ Length = 240 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 131/233 (56%), Gaps = 3/233 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M K+L+++DD + +L L EG++V A GE+ L ++ + + D++LLD+M+P +G Sbjct: 1 MYKVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + ++R+ P+++L+ + +RV L+ GADDY+ KPF+ E+ AR+ A++RRS Sbjct: 61 MGVCASIRERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQ 120 Query: 120 WSEQQQNNDNGSPTLEVD--ALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 +S + + S E D + L+ R+ G+ +E T +EF ++ L H G+V S Sbjct: 121 FSATEAEAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFS 180 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 RE L + G DRAID+HI NLR+K+ +T+ G GY + Sbjct: 181 REELINTIRGFDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYKYTT 233 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 127/234 (54%), Gaps = 13/234 (5%) Query: 1 MNK----ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMP 55 M +L+++DD + L++ +E G+ VA+DGE L+ + D + LD+M+P Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 56 KKNGIDTLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAI 114 K +G + + +R + P+IMLT +G D++ GL++GADDY+ KPF+ ELVAR++A+ Sbjct: 61 KIDGWELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAV 120 Query: 115 LRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 +RR+ + + + LV++ +A+ + + + E LLY LA + Q Sbjct: 121 MRRADLLNDE------DQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQ 174 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 V +R+ L ++ G R ID+HI +R KL + D KT+RG GY Sbjct: 175 VFTRQQLLDQIWGYAFEGDPRTIDVHIKRIREKLTE-ADAKWTIKTIRGVGYKF 227 >UniRef50_Q2BRQ1 Transcriptional regulatory protein CpxR (Fragment) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BRQ1_9GAMM Length = 235 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 102/233 (43%), Positives = 150/233 (64%), Gaps = 4/233 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKKNG 59 ++L+VDDD EL L+ + L EG+ + AH+ ++A + L + L++LDVMMP + G Sbjct: 4 QRLLMVDDDVELCELIGDYLRHEGYLIEFAHNADEACEQLKRSERFALMILDVMMPGRTG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ L+ +R Q PVIMLT RG ++DR+LGLE+GADDYL KP N REL+ARIRA+LRR+ Sbjct: 64 LELLQQIRPKVQIPVIMLTGRGEDIDRILGLEMGADDYLSKPCNPRELLARIRAVLRRAE 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 QQ+ +E + L+PG +E +G+ LELTGTEF +L L + G V+ +E Sbjct: 124 --PQQRTTLFPDSLVEHAGVTLDPGLREVRINGELLELTGTEFNVLAYLIANAGSVLEKE 181 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L++ VL ++L +DRAID+H+S +R+KL KT+RG GY V + Sbjct: 182 QLTELVLHRKLAAYDRAIDVHVSRVRQKLAKHLSDAELIKTIRGVGYQFVKDA 234 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 131/231 (56%), Gaps = 12/231 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 IL+VDD+ + +L+ LEM + V+ A D +QA L+ D DL+LLD M+P +GI Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + + L++ T + P+IMLTA+G E ++V GLE+GADDY+ KPF+ RELVAR++A+LRR Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + S ++V+ L L+P + +++ TE+ LL H +V + Sbjct: 124 TDSM-------GISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYT 176 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 R L V G + +R +D+HI LR+ L + +T+RG GY Sbjct: 177 RNQLLDHVWGGNVYVEERTVDVHIRRLRKALSLEGHD-RFIQTVRGAGYRF 226 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 133/231 (57%), Gaps = 13/231 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KIL+++DD ++ L+ L+MEGF DG L L D +LLD+M+P +G+ Sbjct: 3 KKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGL 62 Query: 61 DTLKALRQT---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + ++Q TPV+++TA+G E DRV+GLE+GADDY+ KPF+ +E+VAR++A+LRR Sbjct: 63 TVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRR 122 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 ++ + + + + ++ GR EA+F+G LT EF LL L + G+V+ Sbjct: 123 ------RETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLD 176 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 RE L V G DR +D+HI LR+K+ + W +T++ GY Sbjct: 177 RETLLNTVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRF 224 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 130/233 (55%), Gaps = 6/233 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 ++IL+V+D+ + L++ E+E + V A DGE+A+ D L+LLDVM+PKK+G Sbjct: 4 HRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKKSGF 63 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS- 118 + + +R+ H + +IMLTA+ E +V GL++GADDY+ KPF+ EL+AR++A LRR Sbjct: 64 EVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRRID 123 Query: 119 -HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 ++ + L+ + A+ G LEL+ EF +L Q G+VV Sbjct: 124 LQTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGEVVL 183 Query: 178 REHLSQEVLGK--RLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 RE L Q++ G P R ID HI NLRRKL D + ++RG GY Sbjct: 184 REDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKF 236 >UniRef50_C8P1C0 Regulatory protein VanR n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1C0_ERYRH Length = 231 Score = 293 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 137/230 (59%), Gaps = 2/230 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 M KIL+VDDD+E+ L+K LE++G+ V+VA DG A+ LD+SI L++LDVMMP+ G Sbjct: 1 MKKILIVDDDKEIRDLMKRYLEIDGYEVVVASDGHDAMRALDESIKLVILDVMMPEITGF 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS-H 119 + +A+R+ + P++ ++A+ +E D+ +G +G DDYL KPF+ EL R++++LRR Sbjct: 61 EVSEAIRKHYNVPILFVSAKATEQDKFVGFSVGGDDYLSKPFSFSELSLRVKSLLRRYIQ 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + +N + +D++ ++ + DG L+LT EF +L LLA + G++ S + Sbjct: 121 YDRATENALEQNKVNTIDSITIDLEKGITLKDGLPLDLTEREFRILKLLATNRGKIFSIQ 180 Query: 180 HLSQEVLGKRL-TPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + V + +HI NLR+K+ + + K + GRGY + Sbjct: 181 SIYENVWQDEYLYSSANTVMVHIRNLRKKIENCPENPKIIKNIWGRGYKI 230 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 85/230 (36%), Positives = 142/230 (61%), Gaps = 10/230 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGID 61 KIL+VDD++++ LL+ LE +G+ V A GE+AL++ L DL++LD+M+P +G++ Sbjct: 5 KILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDGLE 64 Query: 62 TLKALRQTHQ---TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 +A+R + TP++ML+A+G E D + GLELGADDY+ KPF+ + L+ARIR++LRR Sbjct: 65 VARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRRQ 124 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + + T+ V + ++P + +G+ ++LT +EF +L LA G V +R Sbjct: 125 Q---AKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFTR 181 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + ++ G+ DR++D+ IS LR+KL D + +T+RG GY Sbjct: 182 WQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRF 228 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 128/228 (56%), Gaps = 11/228 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 +++++D+ + L+ L EG V VA +G AL ++++ DL++LD+M+P +G+ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 62 TLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR + P+I+LTARG +RV GL+LGADDY+ KPF+ EL+AR+ AI RR+ Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 S L+V L LN +E + G+ +ELT TEF LL +H +V +R+ Sbjct: 138 SRP-------VTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQT 190 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L V G +++HISNLR K+ D +T+ G GY + Sbjct: 191 LLSRVWGFTYVGDSNIVEVHISNLREKIGDH--ERKLIRTVYGVGYTL 236 >UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacillales RepID=C3ALG3_BACMY Length = 238 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 136/229 (59%), Gaps = 2/229 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 IL+VDD+ E+ +L+ LEMEGF+++ A DG+ AL+ + IDL ++D+MMP NG + Sbjct: 4 TILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGYE 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +K +R+ ++ P+I+L+A+ E+D+++GL LGADD++ KPF+ E++ARI+A LRR++ Sbjct: 64 LIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYDF 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 N GS T +D LVL+ G ++L+ E+ LL L G++ +++ + Sbjct: 124 NTDLLNQEGSQT-CIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQI 182 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + V D I + IS LR K+ D + KT+RG GY Sbjct: 183 FENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRFAK 231 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 129/232 (55%), Gaps = 14/232 (6%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI--DLLLLDVMMPKKNG 59 ILLV+D+ +L + ++ L+ EG+ VAHDG AL+ L D +LLD+M+P +G Sbjct: 11 KTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISG 70 Query: 60 IDTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 + K LR+ T PVIM+TA+G+E+DRV+G E+GADDY+ KPF+ REL+ RIRA+LR Sbjct: 71 TEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLR 130 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 R+ + + D L ++ D Q + LT EF LLY G+V Sbjct: 131 RTERPA------DNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQ 184 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 +R+ L +V G R +D H+ LR KL D + +TLRG GY Sbjct: 185 TRDALLSDVWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRF 233 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 130/233 (55%), Gaps = 8/233 (3%) Query: 1 MNK--ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPK- 56 M + IL+VDD+ L L+K L G+ V A DG+ A+++L+ S DLL+LD+M+P Sbjct: 1 MKRKTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGP 60 Query: 57 KNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 NG + K +R+ P+IMLT R E DR+ G + GADDY+ KPF+ EL+ R++AILR Sbjct: 61 LNGFEVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 RSH SE+ P + LV+N ++ G+ + LT TE+ +LY L + G+V+ Sbjct: 121 RSHPSEEFPKG----PVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVI 176 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + E L V G + +IS+LR+K+ D + G GY + Sbjct: 177 THEDLLTRVWGAEYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYLA 229 >UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria RepID=Q0K0A7_RALEH Length = 247 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 91/231 (39%), Positives = 129/231 (55%), Gaps = 4/231 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 + IL+VDDDRE+ L+ L G V V DG LD +S+DL++LDVMMP +G+ Sbjct: 6 DHILIVDDDREIRELVSTYLTKNGLRVTVVPDGRHMRSFLDVNSVDLIVLDVMMPGDDGL 65 Query: 61 DTLKALR--QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + LR + TPV+MLTAR E DR++GLE+GADDYL KPF REL+ARI+A+LRR+ Sbjct: 66 VLCRELRAGKHKATPVLMLTARSDETDRIIGLEMGADDYLAKPFAARELLARIKAVLRRT 125 Query: 119 HWSEQQQNNDNGSPTLEVDALVLN-PGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 L L+ R DG + L+G E+ LL + H +V++ Sbjct: 126 RMLPPNLQITEAGQLLAFGDWQLDTTARHLIDQDGVIVALSGAEYRLLRVFVDHPQRVLN 185 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 R+ L G+ F+R+ID+ +S LR+ L D + KT+R GY+ Sbjct: 186 RDQLLSLTQGREAEMFERSIDLLVSRLRQHLRDDAREPRYIKTVRSEGYVF 236 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 129/227 (56%), Gaps = 13/227 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 IL+V+DD+E+ L+K+ L + + V+VA DG + + + S DL+LLDVMMP NG + Sbjct: 5 HILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFE 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R P+IMLTA E D++ G +LG DDY+ KPF+ L+ R+ A+LRRS+ Sbjct: 65 VSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY-- 122 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + N + L + ++ + + LT EF +L LL Q+ +V++RE++ Sbjct: 123 -----DKNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENI 177 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 ++V G R ID HI NLR+KL P+ KT++G GY + Sbjct: 178 VEKVWGYDYFGETRIIDTHIKNLRKKL-----AIPYIKTIKGIGYKI 219 >UniRef50_A0RL52 DNA-binding response regulator n=93 Tax=Firmicutes RepID=A0RL52_BACAH Length = 241 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 134/227 (59%), Gaps = 8/227 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 KIL+VDD+ + +L++ LEMEG+ V+ A DG +AL+ ++ D+L+LDVM+P +G + Sbjct: 20 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEGPDVLILDVMLPDTDGYEL 79 Query: 63 LKALRQT-HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ R+ PV+MLTA+ D++LGL+LGADDY+ KPFN EL+ R++ + RR + Sbjct: 80 LRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVKKT 139 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 E +++ +E + + P ++ GQ ++LT EF L L + +V R+ L Sbjct: 140 EVTVSHE----VIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDEL 195 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 ++V G RA+D+ + LR+KL + + KT+ G GY + Sbjct: 196 LEKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 239 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 123/233 (52%), Gaps = 3/233 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 ++IL+ +DD + L ++LE EG+ V+ A DG +AL + ++S DL LLD+MMP NG Sbjct: 4 SRILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCNGY 63 Query: 61 DTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D + LR+ +IMLTA+G E+D+V+GLELGADDY+ KPF EL ARI A+LRRS Sbjct: 64 DVCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRRSR 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + S TL + ++ + LT E LL +H + + R Sbjct: 124 RTAPGAAGELPS-TLAIGPATIDRKTYRGCLGTRNFRLTAREMKLLEAFYRHPDEALPRN 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L G R +D HI+ LR+K+ T+ G GY V+ S Sbjct: 183 TLLNLAWGIDYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYRYVAGS 235 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 133/227 (58%), Gaps = 5/227 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDT 62 +L+VDD+ + + ++ LE+EG V A +G +A++ + ++ D++LLDVMMP +G + Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ +R Q PVI+LTA+ E DRV GLELGADDY+ KPF+ REL++RIRA+LRR + Sbjct: 69 LRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQP 128 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 D L ++ R+E DG+ + L TE+ LLY L Q+ G V++ E L Sbjct: 129 PIPQTLVKVD----DRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLL 184 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 +V G + ++I+ LR+K+ + + T RG GY V Sbjct: 185 SKVWGPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFV 231 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 351 1e-95 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 350 3e-95 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 348 8e-95 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 347 2e-94 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 346 4e-94 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 345 6e-94 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 345 7e-94 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 345 8e-94 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 345 9e-94 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 344 1e-93 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 344 1e-93 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 342 5e-93 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 342 5e-93 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 342 5e-93 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 341 1e-92 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 341 1e-92 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 341 1e-92 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 339 4e-92 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 339 5e-92 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 339 6e-92 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 339 6e-92 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 338 1e-91 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 337 2e-91 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 336 4e-91 UniRef50_B8G223 Two component transcriptional regulator, winged ... 335 6e-91 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 335 9e-91 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 334 1e-90 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 334 2e-90 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 334 2e-90 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_C4L340 Two component transcriptional regulator, winged ... 332 5e-90 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 332 5e-90 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 332 7e-90 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 332 8e-90 UniRef50_B8G179 Two component transcriptional regulator, winged ... 331 9e-90 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 331 9e-90 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 331 1e-89 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 331 1e-89 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 330 3e-89 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 330 3e-89 UniRef50_D1C280 Two component transcriptional regulator, winged ... 329 4e-89 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 329 4e-89 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 329 4e-89 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 329 5e-89 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 329 5e-89 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 329 6e-89 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 328 1e-88 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 328 1e-88 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 327 1e-88 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 327 1e-88 UniRef50_P0AE89 Transcriptional regulatory protein cpxR n=110 Ta... 327 2e-88 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 327 2e-88 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 326 4e-88 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 326 5e-88 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 325 6e-88 UniRef50_B8I272 Two component transcriptional regulator, winged ... 325 7e-88 UniRef50_B8I014 Two component transcriptional regulator, winged ... 325 7e-88 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 325 8e-88 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 325 1e-87 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 325 1e-87 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 324 1e-87 UniRef50_D1C683 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 324 2e-87 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 324 2e-87 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 324 2e-87 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 323 2e-87 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 323 3e-87 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 323 3e-87 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 323 3e-87 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 323 3e-87 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 322 5e-87 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 322 6e-87 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 322 6e-87 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 322 8e-87 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 321 9e-87 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 321 1e-86 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 321 1e-86 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 321 1e-86 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 321 1e-86 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 320 2e-86 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 320 2e-86 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 320 3e-86 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 319 4e-86 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 319 7e-86 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 319 7e-86 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 318 8e-86 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 318 8e-86 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 318 1e-85 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 318 1e-85 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 317 1e-85 UniRef50_A4J267 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 317 1e-85 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 317 2e-85 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 317 2e-85 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 317 3e-85 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 317 3e-85 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 316 3e-85 UniRef50_C4L703 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 316 4e-85 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 315 5e-85 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 315 6e-85 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 314 1e-84 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 314 2e-84 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 314 2e-84 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 314 2e-84 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 314 2e-84 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 314 2e-84 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 313 3e-84 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 313 4e-84 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 313 4e-84 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 313 4e-84 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 313 4e-84 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 312 4e-84 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 312 5e-84 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 312 5e-84 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 312 6e-84 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 312 7e-84 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 312 7e-84 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 312 8e-84 UniRef50_A4AL32 Putative two-component system response regulator... 312 8e-84 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 311 9e-84 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 311 1e-83 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 311 2e-83 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 310 2e-83 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 310 3e-83 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_Q188S4 Putative lantibiotic resistance two-component re... 309 4e-83 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 309 4e-83 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 309 5e-83 UniRef50_C0WE14 Two-component system transcriptional regulator n... 309 5e-83 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 309 5e-83 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 309 6e-83 UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea f... 309 7e-83 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 308 8e-83 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 308 1e-82 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 308 1e-82 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 308 1e-82 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 308 1e-82 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 307 1e-82 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 307 2e-82 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 307 3e-82 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 307 3e-82 UniRef50_P54443 Uncharacterized transcriptional regulatory prote... 306 3e-82 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 306 4e-82 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 306 5e-82 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 305 6e-82 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 305 7e-82 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 305 8e-82 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleid... 304 1e-81 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 304 2e-81 UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus la... 304 2e-81 UniRef50_B4WSE4 Response regulator receiver domain protein n=1 T... 304 2e-81 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae ... 303 2e-81 UniRef50_C6PZ92 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 303 2e-81 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 303 2e-81 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 303 2e-81 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 303 3e-81 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_C7N5H9 Response regulator with CheY-like receiver domai... 303 4e-81 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 303 4e-81 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 302 4e-81 UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostrid... 302 4e-81 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 302 5e-81 UniRef50_C4L1R5 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_B8G869 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_C8P1C0 Regulatory protein VanR n=1 Tax=Erysipelothrix r... 302 6e-81 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 302 6e-81 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 302 7e-81 UniRef50_A6LQJ3 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 302 7e-81 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 302 8e-81 UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacilla... 302 8e-81 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_A9AVR8 Two component transcriptional regulator, winged ... 302 9e-81 UniRef50_A6M2A3 Two component transcriptional regulator, winged ... 302 9e-81 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 302 9e-81 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 302 9e-81 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 302 9e-81 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 302 9e-81 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 302 1e-80 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 301 1e-80 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_D1BL25 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regu... 301 1e-80 UniRef50_Q5WBT6 Two-component response regulator n=3 Tax=Bacilla... 301 1e-80 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 301 1e-80 UniRef50_C4IAX3 DNA-binding response regulator n=1 Tax=Clostridi... 301 1e-80 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax... 301 2e-80 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 301 2e-80 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 301 2e-80 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 300 2e-80 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 300 2e-80 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 300 2e-80 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 300 2e-80 UniRef50_A6TSQ9 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q3A190 Two component signal transduction response regul... 300 2e-80 UniRef50_B1YJZ1 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 300 2e-80 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 300 3e-80 UniRef50_A4J7U5 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 300 3e-80 Sequences not found previously or not previously below threshold: >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 351 bits (902), Expect = 1e-95, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 129/234 (55%), Gaps = 4/234 (1%) Query: 1 MN--KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKK 57 M ++L+ DD++E+ LLK+ LE E + V A DGE+AL L + +L++LD+MMPK Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 +GI+ + LR P++MLTA+ E+D+++GL +GADDY+ KPF+ E++ARI+A++RR Sbjct: 61 DGIEVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRR 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 N + L L ++ + + + + LTG E LL A + QV + Sbjct: 121 FLVLGSNANTQEKT-ILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFT 179 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + L + V D + +HI LR+K+ + +T+ G GY V Sbjct: 180 KTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGE 233 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 350 bits (899), Expect = 3e-95, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 125/230 (54%), Gaps = 4/230 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 +KIL+V+DD L LL L EG+ + A DG +AL L++LDVM+P +G Sbjct: 30 HKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGF 89 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R P++MLTAR SE D+V GLE GADDYL KPF REL+AR++A+LRRS Sbjct: 90 ELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 Q G L++ L + R +G L+ + EF L + Q+ +V SRE Sbjct: 150 QNSQTETTGG---LKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQ 206 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L ++V G + R +D+HIS LR+K+ T+RG GY Sbjct: 207 LLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 348 bits (895), Expect = 8e-95, Method: Composition-based stats. Identities = 91/230 (39%), Positives = 137/230 (59%), Gaps = 5/230 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDTL 63 IL+VDD+ + LL L+ G+ V +A DG AL ++ DL+LLD+M+P+ +G++ Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA-DLVLLDIMLPEVDGLEVC 61 Query: 64 KALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + L+ QT P+IMLTA+ E+DRVLGLELGADDY+ KPF+ REL+AR++A+LRRS Sbjct: 62 RQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRSAS 121 Query: 121 SEQ-QQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ + N +L + L L+ +A +T+ LT E+ LL LL + G+ SR+ Sbjct: 122 VQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAFSRD 181 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L + + G R +D+HI +LR KL D +T+RG GY Sbjct: 182 ELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 347 bits (891), Expect = 2e-94, Method: Composition-based stats. Identities = 95/232 (40%), Positives = 139/232 (59%), Gaps = 5/232 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M IL+VDD+ L L+ LE EGF V A DG +AL DL++LD+M+P +G Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +R TP+IMLTA+ ++D++LGLELGADDY+ KPFN REL+ARIRA+LRR+ Sbjct: 61 LTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRA- 119 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + + L V LVL+P ++ A G+ LELT E+ LL LLA+H G V +R+ Sbjct: 120 ---EAASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQ 176 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L V G +R +D+H+ +R KL + + +T G GY + + Sbjct: 177 ELLDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 346 bits (889), Expect = 4e-94, Method: Composition-based stats. Identities = 86/233 (36%), Positives = 126/233 (54%), Gaps = 2/233 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M KIL+V+D+ + + K LE E + V A +G + D+ DL++LD+MMPKK+G Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +RQ P+IMLTA+G E DR+LGL +GADDYL KPF+ RELV R++ ILRR + Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q ++ S +E L + P + +ELT EF +LY++A+H QV SR Sbjct: 121 QVAIQA-KESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRS 179 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L + + + + +S LR KL + W T+ G GY Sbjct: 180 QLLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNG 232 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 345 bits (887), Expect = 6e-94, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 135/230 (58%), Gaps = 4/230 (1%) Query: 1 MNK--ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKK 57 MNK I++VDD++E+ L+ LE EG+ VI A +G +AL+LL+ + +DL++LD+MMP Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 +GI+ +R+ P+IML+A+ ++D++ GL GADDY+ KPFN EL+AR+++ LRR Sbjct: 61 DGIEACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRR 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q N +E+D L +N E + + LT EF +L LLA++ G V S Sbjct: 121 YKKFNVQNGYIN-DDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFS 179 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 E + + V + D + +HI LR K+ + + KT+ G GY Sbjct: 180 IEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 345 bits (887), Expect = 7e-94, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 137/235 (58%), Gaps = 6/235 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 KIL+VDDD + L+ L EG++V+ A+D E+AL ++ ++S+D+ ++D+M+P +G Sbjct: 28 KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGF 87 Query: 61 DTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + ++ LR + TPV+ L+A+G E D+VLGLELGADDY+ KPF+ RE++ARI+A+ RR Sbjct: 88 ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q + + L ++ R E Q + LT EF LL LA++ G+V S Sbjct: 148 IQL--SAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFS 205 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 R+ L ++ G R +D+HI LR K+ + + T+RG+GY Sbjct: 206 RDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPG 260 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 345 bits (886), Expect = 8e-94, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 127/233 (54%), Gaps = 2/233 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 KIL+VDD+ + LL+ LE E + + A +G++A+ L+ + DL+LLD+MMP +GI Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGI 66 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R+ TP+IMLTA+G E +RV G E G DDY+ KPF+ RE+V R++A+LRR+ Sbjct: 67 EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + N L L ++ + DG + LT E+ LLY LA+ +V RE Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPD-RKDGHPWFKTLRGRGYLMVSAS 232 L +EV R +D H+ LR KL + T+ G GY + Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGA 239 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 345 bits (886), Expect = 9e-94, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 132/230 (57%), Gaps = 6/230 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 +ILLV+D++ + + LE E + V DG+ AL+ DL++LD+M+P+ G Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +A+R P+IMLTA+G DR++GLELGADDYL KPF+ RELVAR+RA+LRR H Sbjct: 70 VCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHAD 129 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + Q LE L ++ + G+ ++LT +EF LL L+++ G+V SR L Sbjct: 130 SEPQR-----EVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMEL 184 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 ++VLG ++R ID H+ NLR K+ D W T+ G GY Sbjct: 185 VEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDP 234 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 344 bits (885), Expect = 1e-93, Method: Composition-based stats. Identities = 90/238 (37%), Positives = 136/238 (57%), Gaps = 6/238 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNG 59 M+KIL+VDD+ + +LL L+ G+ V+ A DG AL L L S +LLD+M+PK +G Sbjct: 3 MDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDG 62 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 ++ K LRQ QTP+I++TA+ E D+V GLELGADDY+ KPF+ RE++ARI+A++RR+ Sbjct: 63 MEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRT 122 Query: 119 HWSEQQQNND----NGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 E + V L ++ + + +G+ + LT EF LL + G+ Sbjct: 123 TPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGR 182 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 V+SR+ + V G R +D+HIS+LR K+ +T+RG GY V Sbjct: 183 VLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGDG 240 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 344 bits (884), Expect = 1e-93, Method: Composition-based stats. Identities = 98/230 (42%), Positives = 138/230 (60%), Gaps = 4/230 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 K+L+VDDD ++ +L LE EG++VI A DG +A+D D++LLDVM+P +G Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R+T P+IMLTAR E DR++GLELGADDY+ KPF+ +E++AR+RAI RR Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRR---L 118 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + D G L+V VL+ + + G +ELT TE+ LL L H GQV SR L Sbjct: 119 QPASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQL 178 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 ++V ++R +D HI NLR+KL D + KT+ G GY +V Sbjct: 179 IEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGE 228 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 342 bits (880), Expect = 5e-93, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 131/229 (57%), Gaps = 9/229 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 KIL+VDD+ ++ LL L+ E + A +G++ALDL+ D+ L+LLDVMMP+ +G+ Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +R+ P+IMLTAR ELDR+ GL++GADDY+ KPF+ REL+ARI A LRRSH Sbjct: 67 ACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHRF 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + S TL + L L+ + G+ + LT EF LL+L Q+ +V SRE L Sbjct: 127 -----TVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQL 181 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 ++ G R +D HI LR KL + +T+ G GY Sbjct: 182 LDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKFEE 227 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 342 bits (880), Expect = 5e-93, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 137/233 (58%), Gaps = 7/233 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M KILLV+DD+ + + L LL EG+ V VA+DG +AL+ + DL+LLD+M+P+K+G Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K +R+ P+IMLTA+ E+D+VLGL++GADDY+ KPF +EL+ARI A+LRR Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ + S + ++ ++ G+ + L+ EF +L LL G+V +R+ Sbjct: 121 ------SDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRD 174 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + + + G+ RA+D++I LR K+ D + T+R GY + Sbjct: 175 MIIKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGN 227 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 342 bits (879), Expect = 5e-93, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 137/231 (59%), Gaps = 6/231 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 KIL+VDD+ ++ +++K L EG+ VI A +G +AL+ + DL++LD MMP+ +GI+ Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ +R+ Q P+IMLTA+ E+D+++G E G DDY+ KPF+ REL ARI+ IL+R Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR---- 119 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + N L L L P ++E G+ L+LT TEF LL ++ G+ SR L Sbjct: 120 -LEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLEL 178 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + +G+ ++R ID HISNLR+K+ + +T+ G GY + Sbjct: 179 LEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRG 229 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 341 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 91/225 (40%), Positives = 149/225 (66%), Gaps = 2/225 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 K+++VDD++ + +L+ L+ EG++V A+DG A+DL+ ++ D++LLD+M+P ++G++ Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ ++ P+IMLTA+ SE+D+VLGLELGADDY+ KPF+ REL+AR++A LRR + S Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHY-S 122 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + Q+ N + + + +V+ P G+ +ELT EF L + L++H+GQV++REHL Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 Q V G R +D+ I LR K+ D + T RG GY Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 341 bits (876), Expect = 1e-92, Method: Composition-based stats. Identities = 90/236 (38%), Positives = 133/236 (56%), Gaps = 9/236 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD--SIDLLLLDVMMPKKN 58 M ++L+V+DD + +++ L EG DGE AL+LL D DL+LLDVM+P + Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 59 GIDTLKALRQTHQ----TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAI 114 GI + LR++H PV+MLTAR E V+GLE+GADDY+ KPF+ R+L +R+RA Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 115 LRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 LRR + Q LE L ++ R+ + G+ +ELT EF +L LLA + G+ Sbjct: 121 LRRQRMNAQASPEQRK---LEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGR 177 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 V SRE + + G R+ D+HI +LR+K+ + +T+RG GY Sbjct: 178 VYSREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 341 bits (876), Expect = 1e-92, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 125/229 (54%), Gaps = 6/229 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 +IL VDDD ++ +L+ L EGF VI A GE+AL S DL++LD+MMP +G Sbjct: 3 QRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGF 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 +T + L+ + P+I+L+AR E+DRV+G +G DDY KPF+ EL R++A+LRR Sbjct: 63 ETYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLG- 121 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + N L+ L L+ ++ + + +ELT +F LL+L+A + +V ++ H Sbjct: 122 ----EPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAH 177 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L ++ D + +HI LR K+ + KT+ G GY Sbjct: 178 LLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 339 bits (872), Expect = 4e-92, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 133/229 (58%), Gaps = 3/229 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 +ILL++D +++ +L+ LE+ ++V DG + L L + DL++LD+M+P +G+ Sbjct: 3 KRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGL 62 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LR + TP++MLTA+ SE DRV+GLE GADDYL KPF+ REL AR++A LRR+ Sbjct: 63 QVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTD 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S+ +++ L L ++ ++ + + + LT EF LL +A H GQV SRE Sbjct: 123 MSQ-KESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSRE 181 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L V G + + ++ ++ HI+ LR KL + T+ G GY Sbjct: 182 KLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 339 bits (871), Expect = 5e-92, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 134/227 (59%), Gaps = 4/227 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 ++L+VDD++ + LK L + V A+DGE+AL+ + ++ D++LLD+M+PK +G+ Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ P+IMLTA+G ++D++LGL+ GADDY+ KPFN E+ AR++AILRR + Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRR---N 129 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + S ++ + ++ + + + LT EF LL +LA + G+V SR++L Sbjct: 130 SSITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNL 189 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + V G+ T R +D+H+ LR K+ + + T G GY Sbjct: 190 LKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 128/231 (55%), Gaps = 2/231 (0%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDT 62 IL+VDD+ + LLK LE E F + A +G++A +L +++ +LLD+M+P+ +GI Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 LR+ QTP+IMLTA+G E +RV G E GADDY+ KPF+ RE+V R++A+LRR+ + Sbjct: 65 ATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTT 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 +Q+ + +E L ++ D Q + LT E+ LL LA+ +V RE L Sbjct: 125 VEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQLL 184 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDG-HPWFKTLRGRGYLMVSAS 232 +EV R +D H+ LR KL +T+ G GY S Sbjct: 185 KEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKS 235 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 140/242 (57%), Gaps = 14/242 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M++ILLV+D+ + L+ L EG+ V G++A ++ DL++LD+M+P +G Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 60 IDTLKALRQTH--QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR- 116 ++ + +R PVIMLTA+ E+++++GLE+GADDY+ KPF+ REL+AR++A LR Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 117 RSHWSEQQQNNDNGSPTL----------EVDALVLNPGRQEASFDGQTLELTGTEFTLLY 166 R+ +++ DN + + L + P + A + Q L+LT EF LL Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180 Query: 167 LLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 ++ + GQV++RE L +++ G R +D+HI +LR+K+ + +T+RG GY Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 227 LM 228 + Sbjct: 241 RL 242 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 128/232 (55%), Gaps = 6/232 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KIL+VDDD + L+ L E F+ + +DGE+A+ + +L+LLD+M+P +G Sbjct: 5 QKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGY 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR--- 117 + + +R+T P+IML+A+G D+VLGLELGADDY+ KPF+ +ELVAR++A+LRR Sbjct: 65 EVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 S + +Q + L++N ++ G ++E+ E L Y LA H QV + Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 RE L + G R +D+HI LR K+ D T+ G GY Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISW--RLSTVWGIGYKFE 234 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 91/233 (39%), Positives = 140/233 (60%), Gaps = 4/233 (1%) Query: 1 MNKI--LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKK 57 M +I L+ DD+ E+ L++ LE EG++V+ A DGE+A+ +++ DL++LD+MMPK Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 +G + + +R H P+I L+A+ S+ D+V GL LGADDY+ KPF ELVAR+ A LRR Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q + ++ S LEV +V++P R+ G+ +ELT EF +LYLLA H +V + Sbjct: 121 FLTLNQPKVAESKSA-LEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 E++ Q+V + +HI LR+KL + K + KT+ G GY Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFNG 232 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 336 bits (863), Expect = 4e-91, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 131/238 (55%), Gaps = 16/238 (6%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD----------DSIDLLLLD 51 ++IL+V+D+ + ++ +L+ EGF V VA DG AL+ ++ DL++LD Sbjct: 24 SRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLD 83 Query: 52 VMMPKKNGIDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVAR 110 +M+P NG+D + LR+ P++ML+A+ +E DRV+GLE+GADDYL KPF RELVAR Sbjct: 84 LMLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVAR 143 Query: 111 IRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQ 170 RA+LRRS L + L L P D + L L+ EF LL L + Sbjct: 144 CRALLRRSQ-----NQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMR 198 Query: 171 HLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 H +V SR+ L +++ G + ID+HI LR K+ + T+RG GY + Sbjct: 199 HPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 335 bits (862), Expect = 6e-91, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 1/227 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 K+LLVDD+ + +++++L+ E + ++ A +GE AL+ +S DL++LDVM+P +G + Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+T + P++ML+A+G +D+ +G LGADDYL KPF+ EL R++A+LRRS Sbjct: 66 VCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFDK 125 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 EQ + + + L +N E G+ + LT EF LL +A+H QV +RE L Sbjct: 126 EQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQL 185 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + I + I LR K+ + +T+ G GY Sbjct: 186 FAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 335 bits (860), Expect = 9e-91, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 130/229 (56%), Gaps = 2/229 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 ++LLVDD+ + LL L EGF + DG AL L + + D ++LD+M+P+ +GI Sbjct: 10 KRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGI 69 Query: 61 DTLKALRQT-HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K LR +TP++M++A+ E D+VL LELGADDY+ KPF+ REL+AR++AILRR+ Sbjct: 70 EVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTE 129 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ P + L L P R E D + L LT E+ LL L +H ++RE Sbjct: 130 AEISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRE 189 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + + G R +D+HI LR K+ D + +T+RG GY Sbjct: 190 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 334 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 89/234 (38%), Positives = 128/234 (54%), Gaps = 10/234 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M KIL+VDD+ + L++E L+ G+ A DG AL LL DL++LDVMMP +G Sbjct: 72 MAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDG 131 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + L+ +R H TPVI+LTARG E D++ GLE GADDY+ KPF+ RELVAR++A+L R+ Sbjct: 132 MTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRT 191 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ T+ L ++ G+ + LT EF LL LA + G +SR Sbjct: 192 -----MPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSR 246 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 E + Q+V DR +D H+ LR L + + T+ G GY + Sbjct: 247 EKILQKVWNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKFDPDA 297 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 134/231 (58%), Gaps = 4/231 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 MN IL+VDD++ + L++ L+ EGF + +++G+ A ++ + ++L +LDVM+P +G Sbjct: 3 MN-ILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDG 61 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +R+ H PVIMLTA+ E+D++ GL LGADDY+ KPF ELVAR++A LRR Sbjct: 62 FTLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + N + L+L+ E + + + + LT EF++L++L + G+VVS E Sbjct: 122 KYNSVEPNQEEH-LIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSE 180 Query: 180 HLSQEVLGKRLTPFD-RAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L EV G + + +HI +LR K+ + + KT+ G GY + Sbjct: 181 ELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 140/238 (58%), Gaps = 6/238 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M K+L+VDD+ + +LL+ L+ F+V A +G AL +++++ D++LLD+M+P+ +G Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 60 IDTLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + LK +R + TPVI+LTA+ +E D+V GLE+GADDY+PKPF+ RE++ARI A+LRR Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 119 HWSEQQQNNDNGS----PTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 SE + ++ + + S + Q L+LT EF L+ L H Q Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQ 180 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 V+SR+ L Q V G + R +D+ I++LR K+ + KT+RG GY + Sbjct: 181 VLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGG 238 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 131/229 (57%), Gaps = 1/229 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 M+KIL++DD++E+ LLK+ LE +G V+ A++G++ ++ + DL++LD+MMP +G Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEMPDLIVLDIMMPDIDGY 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R T P++ L+A+ SE+DR+ G LG DDY+ KPF+ +EL+ARI A LRR Sbjct: 61 EVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRR-EK 119 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 N + L + ++ +E G + LT EF +L LL+ H GQV S+E Sbjct: 120 RAILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQ 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + ++V G + HI N+R K+ + + KT+ G GY Sbjct: 180 IYEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWE 228 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 92/230 (40%), Positives = 132/230 (57%), Gaps = 8/230 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 K+L+VDDD+ + L+K E EGF V+ DG+ L ++ D+++LD+M+P ++G+ Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR P+IMLTA+G E DRVLGLE+GADDY+ KPF+ RELVARI+A+LRRS + Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + N L+ L + ++ D E+T EF LLY LAQ+ +V +RE L Sbjct: 126 DPATNWQ-----LKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREEL 180 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 V G R +D+HI LR KL H + +T+ G GY Sbjct: 181 LGAVWGYDYFGDQRTVDVHIRRLRTKLASLP--HEYLQTVWGVGYKFTPP 228 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 332 bits (853), Expect = 5e-90, Method: Composition-based stats. Identities = 89/233 (38%), Positives = 136/233 (58%), Gaps = 9/233 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M +IL+ DD+ ++ LL LE EG+ + A +G +A++ L +++ L+LLDVMMP+ +G Sbjct: 5 MFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDG 64 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +R+ P+I+LTAR ELDR+ GL++GADDY+ KPF+ REL+ARI A LRR+H Sbjct: 65 LTACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTH 124 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++Q T +V L ++ + S G+T+ LT EF LLYL + +V SRE Sbjct: 125 SFSKEQEA-----TFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSRE 179 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L ++ G R +D HI LR KL + + +T+ G GY + Sbjct: 180 QLLDQIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 332 bits (853), Expect = 5e-90, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 136/230 (59%), Gaps = 7/230 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M+ IL+VDD+ L +L+ LE EGF+V+ A DG +AL + + DL++LD+MMP+ G Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + L+A + +TPVI+LTA+ + D++LGLELGADDY+ KPFN REL+ARIRA+LRR+ Sbjct: 61 YEFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + L +VL+ + G+ ++LT +EF +L L GQV SR Sbjct: 121 QTPLEP------DVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRL 174 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L V G +R ID+HI NLR K+ + +T+ G GY Sbjct: 175 DLLDRVSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 332 bits (852), Expect = 7e-90, Method: Composition-based stats. Identities = 82/236 (34%), Positives = 136/236 (57%), Gaps = 6/236 (2%) Query: 1 MNK--ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKK 57 M + IL+ +DD ++ L+ L EG+ ++ A DG +A+ L+ ++IDL++LD+MMP Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 58 NGIDTLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +G + ++ +R Q ++ P+I L+A+ S+ D++ GL +GADDY+ KPFN EL+AR+ A LR Sbjct: 63 DGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLR 122 Query: 117 RSHWSEQQ-QNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQV 175 R Q + + + L ++ ++ + ++LT EF +LYLLA H +V Sbjct: 123 RFRQLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKV 182 Query: 176 VSREHLSQEVLGKRLT-PFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 S EH+ Q+V G+ + +HI LR+KL + K W KT+ G GY Sbjct: 183 FSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQG 238 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 332 bits (852), Expect = 8e-90, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 134/231 (58%), Gaps = 1/231 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M +L++DD+ E+ L++ L EG+ V A++G ++++ ++ I +++LDVMMP +G Sbjct: 1 MFNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +R+ + P+IML+A+ ++D++ GL GADDY+ KPFN EL+AR+++ +RR Sbjct: 61 FQVCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYV 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + ++ N N +E + +N + F G+ L+LT E+ +L LLA +LG V S E Sbjct: 121 FLNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAE 180 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + +EV ++ + + +HI LR K+ + +T+ G GY + Sbjct: 181 DIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIEE 231 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 331 bits (851), Expect = 9e-90, Method: Composition-based stats. Identities = 100/233 (42%), Positives = 146/233 (62%), Gaps = 12/233 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M KILLV+DD + L+ LE EG+ V++A +G +AL+LL + DL+LLDVM+P+ +G Sbjct: 1 MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDG 60 Query: 60 IDTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +D K +R +T P+IML+AR DRV+GLELGADDY+ KPF+ REL+ARI+A LR Sbjct: 61 LDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 E+++N+ +L L + P + G+ + LTG EF LL++ + QV Sbjct: 121 -----EERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVF 175 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 SRE+L Q+V G ++ R +D+HISNLR KL P +++RG GY + Sbjct: 176 SREYLLQKVWGYTVSGDTRTVDVHISNLRSKLK---SVSPIIESVRGVGYRLA 225 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 331 bits (851), Expect = 9e-90, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 135/228 (59%), Gaps = 7/228 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 KIL+++D+ + ++ + EGF HDG + +++ DL++LD+M+P +G+ Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+T P+IMLTA+ +E D+V+G E+GADDY+ KPF+ LVARI+A++RR + Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLE-LTGTEFTLLYLLAQHLGQVVSREH 180 + ++ +E + +N +E +G+ +E LT EF LLY L Q+ QV SRE Sbjct: 122 GKAVIDE---DMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQ 178 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L ++V G + +R +D+HI LR+KL + P+ T+ G GY Sbjct: 179 LLEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKF 224 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 87/231 (37%), Positives = 142/231 (61%), Gaps = 3/231 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGI 60 +ILLV+DD ++ LL+ L G V V DG+ L L ++ DL++LD+M+P +G Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D + LRQ TP++M+TA+ E+D+VLGLELGADDY+ KPF+ RE++AR++A+ RR Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ Q + +P +E+ +V+ P +++ + +G+ ++LT EF LL L A+H G+ SR+ Sbjct: 127 VDQETQGQADDTP-IELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRD 185 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L EV G + + + ++ HI+ LR K+ + KT+ G GY Sbjct: 186 ELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAE 236 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 1/229 (0%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 ILLVDDD ++ ++ K L EGF + A G +A+ L DL++LDV +P +G + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R + P++ L+ R ++D+++G +G DDY+ KPF+ LVA++++ +RR Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKELS 125 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 + L L ++ E + +G+ + L EF LL LA++ G+V S EHL Sbjct: 126 GSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLF 185 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + GK R + +HISNLR+K+ + T+RG GY Sbjct: 186 DSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNGG 234 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 135/232 (58%), Gaps = 10/232 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 ++L+VDDD++L +++K LE EGF+V +A+DG+ + ++ + + ++LD+M+P+ +G Sbjct: 4 QQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGW 63 Query: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + +R + P+IMLTA+ E D+++GL+LGADDY+ KPF+ RELVAR+RA++RR Sbjct: 64 EVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRR 123 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q+ + LE L ++ + ++L EF LLYLL ++ +V + Sbjct: 124 ------DQDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFT 177 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 RE + +++ G R +D H+ +R+KL +T+ G GY Sbjct: 178 REEILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFE 229 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 134/231 (58%), Gaps = 4/231 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 K+L+ DDD + +++ E + +I A DG +AL++++ + D+++LDVMMP+ +G + Sbjct: 34 KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ TP+IMLTA+ E DRVLGLELGADDY+ KPF+ RE+VARIRAI+RR Sbjct: 94 ACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQP- 152 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + ++ T + L ++ ++E G+ + EF LL L + G V SRE L Sbjct: 153 KPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQL 212 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 ++V G R ID+HI +R++L +T+ G GY S Sbjct: 213 LEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD--CIQTVWGIGYKFGVDS 261 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 90/231 (38%), Positives = 137/231 (59%), Gaps = 10/231 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 +L+VDD+ ++ L+ LE F+ + A +GE+AL +L ++ +D++L+DVMMPK +G Sbjct: 4 KTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGF 63 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 +R+ P++ LTARG E D+V GL+LG DDY+ KPF+ EL+ARI AI+RR++ Sbjct: 64 TLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYH 123 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++Q+ + L LV++ ++ + DG + LT EF LL LA+H GQV SRE Sbjct: 124 NKQKNED------LSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSRED 177 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L +V G T R +D HI LR KL D + +T+ G GY + Sbjct: 178 LLAQVWGYDYTGNARTVDTHIKTLRMKLKQASD---FIQTVWGIGYKFEVS 225 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 134/233 (57%), Gaps = 6/233 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 KIL+VDD+ ++ L++ L++ G++V DGE ++L DL++LD+M+PK +GI Sbjct: 3 KKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGI 62 Query: 61 DTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LR+ P++MLTA D++ GL+ GADDY+ KPF+ +EL++RI+AI RR Sbjct: 63 QVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQ 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q S T ++ L + ++E DG+T+ELT EF LL L +H G+V+SR+ Sbjct: 123 TLPGQAE----STTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQ 178 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L V R +D+HIS+LR K+ + T+R GY + + + Sbjct: 179 QLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAPN 231 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 99/231 (42%), Positives = 140/231 (60%), Gaps = 4/231 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS----IDLLLLDVMMPK 56 M I++V+D+REL +L++ L EG V V DG AL+ L DL++LD+M+P Sbjct: 1 MADIVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPN 60 Query: 57 KNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +G++ + +RQ+ TP++MLTAR +ELDRVLGLELGADDYL KPF+ REL AR+ AILR Sbjct: 61 VDGLEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 R ++G+ ++ L ++P +E + GQ + LT EF LL+LLA + G+V Sbjct: 121 RVEMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVF 180 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 SR++L V G+ DR +D HI LR+KL TL G GY Sbjct: 181 SRDYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYK 231 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 90/231 (38%), Positives = 121/231 (52%), Gaps = 8/231 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGID 61 +IL+ DDD + +L+ L EGF VI A DG++ALDL L DL++LDVMMPK +G Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +R P+++LTARG +D+V+G LGADDY+ KPF+ ELV R+ AILRR Sbjct: 66 VCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPTL 125 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + S TL L +N + + ELT EF LL+L+A H G +RE L Sbjct: 126 PE-------SRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESL 178 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 V + + I LR K+ D W KT+ G GY A Sbjct: 179 LARVWHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAG 229 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 130/230 (56%), Gaps = 2/230 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+V+DD + +++KE L EG+++ A G +A++ ++ ++++D+MMP +GI+ Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +++ +R+ + P+I+L+A+G + D+++GL +GADDY+ KPF+ EL+AR++ +RR+ + Sbjct: 65 SMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIYY 124 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + ++ E + + + G+ L LT E +L L ++ +V ++ + Sbjct: 125 NETKSIKEN-KIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 V G+ + +H+ LR K+ D + +T+ G GY + Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGD 233 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 92/237 (38%), Positives = 133/237 (56%), Gaps = 10/237 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 I++ DD+R +T + + LE EG V VA +GE+A+ L + DLL+LD+MMPK +G+ Sbjct: 3 ANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGL 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +RQT TP+IMLTARG E DR+LGL +GADDY+ KPF+ RELV R+ ILRR+ W Sbjct: 63 EVCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGW 122 Query: 121 SEQQQNNDNGSPTLE---------VDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQH 171 + + + L ++ L + P + S +ELT EF LL+LLA + Sbjct: 123 RSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMY 182 Query: 172 LGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 G+V SR L +V + +H+ LR K+ W KT+ G GY + Sbjct: 183 PGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 132/239 (55%), Gaps = 13/239 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M IL+V+DD+E+ L++E LE E F IV +DGE L + + DL++LD+M+PK +G Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 60 IDTLKALRQT---HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 ++ +RQ ++MLTA+G E+DR++GL GADDYL KPF+ RELVAR+RA+LR Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASF----DGQTLELTGTEFTLLYLLAQHL 172 R Q + ++ + +AS + LELTG EF LL + Sbjct: 131 RQLRQGQPVGQ-----IYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYP 185 Query: 173 GQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 G+V +R L +++ G +R +D HI LR+K+ + KT+ G GY Sbjct: 186 GRVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDP 244 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 329 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 132/231 (57%), Gaps = 8/231 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 K+L+V+D+ + + LEM G+ V A GE AL LL + DL++LD+M+P +G++ Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 62 TLKALRQTHQTP-VIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R+T P +I+LTA+G + D+++GLELGADDY+ KPFN EL+ARI+A+LRR Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + G +L L+ + + Q +ELT TE++LL + ++ G+ + RE Sbjct: 127 Y------EAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREE 180 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + + G+ + +D+HI LR K+ D + KT+ G GY Sbjct: 181 MLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 132/231 (57%), Gaps = 3/231 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGID 61 +IL+ DD+ E+ +L+ LL EG+ VI A DG + L L D SIDL++LD+MMP NG Sbjct: 3 TRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDSSIDLIVLDIMMPNMNGYQ 62 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 T LR+T P++ LTA+G + D+ LG GADDYL KPF+ EL AR++A+LRR Sbjct: 63 TCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQVY 122 Query: 122 EQQQNND--NGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + ++ + L +D L L +Q A +G+ +ELT EF +L L ++ Q+ S E Sbjct: 123 KGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIFSAE 182 Query: 180 HLSQEVLGKR-LTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L ++ + + I +HI NLR+K+ + KT+ G+GY Sbjct: 183 QLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 127/231 (54%), Gaps = 4/231 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M +L+V+D+ L L LL EGF V DG AL + S D++LLD+M+P +G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K LR PVIM+TAR SE+D+V+GLELGADDY+ KP++ REL+ARIRA+LRR Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR-- 118 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + LE + ++ R S +G+ + L EF LL L ++ G+V++R Sbjct: 119 -GADNDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRG 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L V G + +D+H+ LR K+ + T+RG GY + Sbjct: 178 QLIDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 73/229 (31%), Positives = 128/229 (55%), Gaps = 3/229 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 K+L+++DD ++ +L+K L G + +A DG ++ L ++ D+++LD+M+PK +G+ Sbjct: 4 KKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGL 63 Query: 61 DTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + LR+ H P++MLT+R E D+V L GADDY+ KPF+ REL AR+ A +RR Sbjct: 64 EVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYR 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ ++ L D L L+ + + + +E+T EF LL L ++ G+ SR Sbjct: 124 PEKEPSFINSKKTFL-FDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRT 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L V G + ++ ++ HI+ LR K+ + + T+ G GY Sbjct: 183 ELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 120/233 (51%), Gaps = 5/233 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M ILLV+DD L L E GF V A DG L++ DL++LDVM+P +G Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +A+ + P+++LTA E R+ GLELGA DY+ KPF+ EL+AR+RAILR Sbjct: 61 FSVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILR--- 117 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++Q S L V + L+ + + + +EL+ EF LL L + G +SR+ Sbjct: 118 -WNERQRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRD 176 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L + V G +R ID+H+ LR KL +T+RG GY + Sbjct: 177 LLLERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDPA 229 >UniRef50_P0AE89 Transcriptional regulatory protein cpxR n=110 Tax=Bacteria RepID=CPXR_ECO57 Length = 232 Score = 327 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 232/232 (100%), Positives = 232/232 (100%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI Sbjct: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW Sbjct: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH Sbjct: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 122/231 (52%), Gaps = 6/231 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 ++L+VDDD ++ ++ L GF+V A DG AL + + DL++LD+M+P +GI Sbjct: 56 ARVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGI 115 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + LR PVIMLTAR E DR+ GLE+GADDY+ KPF+ REL R++++LRR++ Sbjct: 116 EVFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + + L LV++ + A+ G L LT EF LL L + G+ +R Sbjct: 176 TVPGAE----AGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGE 231 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L + V G + +HI LR K+ D T+ G GY Sbjct: 232 LLEHVWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDPG 281 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 90/236 (38%), Positives = 135/236 (57%), Gaps = 8/236 (3%) Query: 1 MNK----ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMP 55 M + IL+++DDRE++ +L E L EG+ V++AHDGE L LLL+D+M+P Sbjct: 9 MKRMTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLP 68 Query: 56 KKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115 K +G + + +RQ + P+I+++AR S++D++ L LGADDY+ KPF+ ELVAR+++ L Sbjct: 69 KVDGFEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHL 128 Query: 116 RRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQV 175 RR H + + L D L +N R+ DG+ L LT EF LL LA+ GQV Sbjct: 129 RRYHRYNGLKEQE---KVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQV 185 Query: 176 VSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 S+E L V + R + +HI N+RRKL D + T+ G GY + Sbjct: 186 FSKEQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIGQ 241 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 84/239 (35%), Positives = 130/239 (54%), Gaps = 17/239 (7%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-----------DDSIDLLLL 50 IL+++D+ + + L+ EG++ +VA DG +AL+L+ + L++L Sbjct: 22 ANILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIIL 81 Query: 51 DVMMPKKNGIDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVA 109 DVM+P NG+D + +R+ P++M++A+GSE+DRV+GLE+GADDYL KPF RE++A Sbjct: 82 DVMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLA 141 Query: 110 RIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLA 169 R RA+LRR+ P L L L P A+ G+ L L+ E+ LL L Sbjct: 142 RCRALLRRTRI-----QQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFM 196 Query: 170 QHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 +H +V RE L +V G + +D+HI LR K+ + T+RG GY Sbjct: 197 RHPRRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 91/233 (39%), Positives = 133/233 (57%), Gaps = 5/233 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 +LLV+D+ ++ +L+ LE E F V+ A + AL++L +DL++LDVMMP +G Sbjct: 5 ATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGW 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 T + +R+ + P++ LTARG E DRVLG ELGADDY+ KPF+ RELV R++A+LRR Sbjct: 65 TTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSS 124 Query: 121 SEQQQNND---NGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + Q++ L L L P ++A G+TL L+ E+ LL LAQ+ G+V+S Sbjct: 125 TPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLS 184 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPD-RKDGHPWFKTLRGRGYLMV 229 R+ L V G R +D H+ LR KL + T+RG GY Sbjct: 185 RDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFE 237 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 325 bits (836), Expect = 6e-88, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 138/229 (60%), Gaps = 2/229 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M ++L+ DD+ E+ LL LE +G + A +G +AL +++++ +D+ ++D+MMP+ +G Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ +R+ + PVIML+A+ D++LGL+LGADDY+ KPFN E++AR++A LRR + Sbjct: 61 YHLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S ++ LE L LN + + LT TE+ +L+ L ++ G+V +++ Sbjct: 121 KSMSEKEKCEK-QYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKK 179 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + V + D AI +HISNLR K+ D + KT+RG GY + Sbjct: 180 QIFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKL 228 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 134/231 (58%), Gaps = 2/231 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL++DD+ E+ L+K L +GF VI A +G AL+L + + DL++LDV++P NG++ Sbjct: 5 KILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLE 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR+ ++P++ L+ + +++D++LGL +G DDY+ KPF+ ELVARI A LRR+ Sbjct: 65 LCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRIL 124 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 Q N+ + S L + L ++ D + + LT EF +L LL+QH V S L Sbjct: 125 TNQTNSADLS-ILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQL 183 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + G R + +HISNLR+K+ T++G GY + + + Sbjct: 184 YDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDTTA 234 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 3/230 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+V+DDRE+ L+ + L EG+ I HDG A++ L D L++LD+M+PK G + Sbjct: 6 KILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYE 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ +R+ TPV++L+A+ E D+++GL LGADDYL KPF EL AR++A LRR Sbjct: 66 VLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRY--L 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 D + + + +N E ++ LT EF +L L Q+ +V ++ L Sbjct: 124 NFSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQL 183 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + + G+ + + +HI LR K+ + +T+ G GY +V Sbjct: 184 FKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 325 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 136/232 (58%), Gaps = 3/232 (1%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKN 58 MN IL+VDD++E+ L++ L+ EGF V + G++AL+ ++ ++D+ +LD+M+P + Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDID 60 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G + +R+ + P+IMLTA+ ++D+++GL +GADDY+ KPFN E+VAR++ LRR Sbjct: 61 GFHICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRY 120 Query: 119 HWSEQQ-QNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + ++ L++N + S G+ + LT EF++L+ L +H G+VV Sbjct: 121 MRYNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVP 180 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 E L + V G++ + + HI LR K+ + + KT+ G GY + Sbjct: 181 SEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIE 232 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 135/232 (58%), Gaps = 5/232 (2%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKN 58 M KIL+VDD+ E+ L++ L+ E F V +D E+A + ++ + +DL LLD+MMPK + Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G++ K +R+ + P+IMLTA+G+E+D++ GL LGADDY+ KPF E+VAR++A LRR Sbjct: 129 GLELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRY 188 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 LE L+LN E + + L LT TEF++L +L + G VVS Sbjct: 189 KRYN--MGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSA 246 Query: 179 EHLSQEVLGKRLTP-FDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 E L ++ + I +HI +LR K+ D + + KT+ G GY + Sbjct: 247 EELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIE 298 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 133/233 (57%), Gaps = 8/233 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 KIL+VDD++ + ++K LE +GF+VI A DG+ ALD+ +++I L++LD+M+PK G + Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +R P+IMLTA+ E +++ G+ +GADDYL KPF+ RELV R+RA+LRR++ Sbjct: 66 VCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYRD 125 Query: 122 EQQQNNDNGSPTLEV--DALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + L L ++ + G + LT EF +L + + QV SRE Sbjct: 126 FSPM-----ADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSRE 180 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L ++ G FDR +D +I N+R+K+ + T+ G GY + ++ Sbjct: 181 KLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIPSN 233 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 134/229 (58%), Gaps = 4/229 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 K+L+VDD+ + +L+ L M G+ V+ A DGE+AL+L + D+++LD+MMPK +G Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ P+IMLTA G DR+ GLELGADDY+ KPF+ +EL ARIRA+LRR++ + Sbjct: 76 VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + S + + L ++ +++ D + + LTG EF+LL LL GQ SR + Sbjct: 136 AFSSHLTT-SGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADI 194 Query: 182 SQEVLGK--RLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 QEV G R +D+HIS LR KL T RG GYL Sbjct: 195 LQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 324 bits (832), Expect = 1e-87, Method: Composition-based stats. Identities = 84/232 (36%), Positives = 128/232 (55%), Gaps = 8/232 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGI 60 +L+VDD+ ++ +L+++ LE EG+ V+ A+DG AL L+ D +LLDVMMP +G Sbjct: 5 TTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGY 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D L+ +R+ PV+ LTAR + D++ GL LGADD++ K E+VARI+A+LRR Sbjct: 65 DVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYRR 124 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 E L+ LV++ E DG+ ++LT EF LL L A+H QV +RE Sbjct: 125 GEPAPRA-----VLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQ 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L Q + G+ + +HI LR K+ + + T+ G GY + Sbjct: 180 LFQRLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGEA 229 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 141/231 (61%), Gaps = 5/231 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 IL+VDD+ + +L+ LE + V+ +G A++++ +D +++D+M+P+ +GI Sbjct: 3 KTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGI 62 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K +R+ Q P+IMLTA+ S++D++LGLELGADDY+ KPF+ +EL++RI+ ILRR+ Sbjct: 63 EATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTD 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 N PTL+ + + ++ R + + ++LT EF LL L ++ QV+SR+ Sbjct: 123 R---AINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRD 179 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + ++V G R +D+HIS+LR KL + KT+RG GY VS Sbjct: 180 QILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVS 230 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 95/230 (41%), Positives = 140/230 (60%), Gaps = 2/230 (0%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDT 62 IL+VDDD++L L+ + L G++V AHDG + L++L ++LDVMMPK +G + Sbjct: 13 ILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFEM 72 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH-WS 121 LK LR+ PV+MLTA G E DR++GLE+GADDYLPK F+ REL+AR+RA+ RR Sbjct: 73 LKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRLSM 132 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 ++ + TL L ++ + A G+ L LT E+ LL LA+ +V+SR+ L Sbjct: 133 DRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRDQL 192 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 V G+ FDR++D+HIS+LRRKL + + +T+R GY+ Sbjct: 193 LDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFNDP 242 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 131/232 (56%), Gaps = 4/232 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL--DDSIDLLLLDVMMPKKNG 59 KIL+VDDD+E+ L++ L EG+ V A+D L +L ++ I L +LD+MMP +G Sbjct: 25 AKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMDG 84 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +K +R+T PVIML+A+ ++LD+++GL GADDY+ KPFN EL AR++A LRR Sbjct: 85 LSMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRFT 144 Query: 120 WSE--QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q+ D+G +E L +N +E + +LT E+ +L LLA + G+V S Sbjct: 145 EFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVFS 204 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + + V ++ + + +HI LR K+ KT+ G GY + Sbjct: 205 TDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIE 256 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 323 bits (830), Expect = 2e-87, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 137/233 (58%), Gaps = 2/233 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M KIL+V+D+ ++ L+ + L+ EGF V++AHDG+ A+D +D + +L +LD+M+P +G Sbjct: 1 MRKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + L+ +R+ PVIMLTA+ +++D+V+ LGADDY+ KPF+ EL AR++A+LRR+ Sbjct: 61 SEVLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTE 120 Query: 120 WSEQ-QQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + +N L +L +N E G + L EFTLL LA+ +VV+ Sbjct: 121 GTHHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTI 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + + V GK D + +HIS LR K+ + +T+RG GY +V Sbjct: 181 AQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLVCG 233 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 92/234 (39%), Positives = 136/234 (58%), Gaps = 3/234 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNG 59 M IL+VDD+ + +LL+ LE E F V+ A DG QAL + L D ++LD+M+PK +G Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 I K +R+ +TP+++LTA+ +E D+++GLE+GADDY+ KPF+ RE++ARIRAI RR+ Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +Q + S T+ V L ++ A L LT EF LL L +V SR Sbjct: 121 TQ-PIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSR 179 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 E L V G R +D+ +S+LR K+ D + KT+RG GY + + Sbjct: 180 EKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDPA 233 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 134/231 (58%), Gaps = 3/231 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 +L+V+D++E+ ++ L+ +G+NV A +G + L+++++ + L ++D+MMPK +GI Sbjct: 5 NVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGIT 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR+ + PVIMLTA+ E+D++LGL +GADDY+ KPFN EL+AR+ + LRR Sbjct: 65 MVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSKY 124 Query: 122 -EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + S + L LN +E DG+ +++T EF +L LL ++ G+V S E Sbjct: 125 LSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSAEE 184 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + ++V + D + +H+ N+R K+ + K + G GY + Sbjct: 185 IYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIEKQ 234 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 102/229 (44%), Positives = 144/229 (62%), Gaps = 8/229 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 ILLV+D++++ +L + L EGF V +A DG +AL + D DL++LD+M+P +G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 +K +RQ + TP+I+LTAR E+D++LGLELGADDY+ KPF+ REL RI+A+LRRS E Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 Q N + + L +NP R EA L LT TEF +L LLA++ GQV SR H+ Sbjct: 125 QVTN-------VSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHIL 177 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + V G ++R ID HISNLR K+ KT+ G GY +V+ Sbjct: 178 ERVFGDIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 128/229 (55%), Gaps = 1/229 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M KIL+V+DD + L K+ LE+ F V + DG L ++ ++ DL++LDVM+PK +G Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D L+ + T PV+M++A+ E+D++ GL LGADDY+ KPF+ ELVAR+++ ++ Sbjct: 61 FDILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYE 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + ++ + + + L +N ++ + + + L EF LL +AQ+ +V ++ Sbjct: 121 RLKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKD 180 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + + G + +HI +R K+ + +T+ G GY + Sbjct: 181 ELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRI 229 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 91/231 (39%), Positives = 147/231 (63%), Gaps = 7/231 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KIL+VDD++++ +LK LE F++ +A DG++AL +++ + DL++LD+M+P+ +G Sbjct: 3 PKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGE 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +RQ QTP++MLTA+G+E D+V G GADDYL KPF+ REL+ARI+AILRRS+ Sbjct: 63 EVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ + L ++P R + +G+ +LT TEF +L L ++ GQV +RE Sbjct: 123 KAEKAEI----FVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQ 178 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L+++V+G +DR ID HI N+R+KL + + T+ G GY Sbjct: 179 LAKKVMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKFEGD 227 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 89/231 (38%), Positives = 128/231 (55%), Gaps = 5/231 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M +L+V+D+ L L LL EGF V DG AL D + D++LLD+M+P +G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K LR PVIM+TAR SE+D+V+GLELGADDY+ KP++ REL+ARIRA+LRR Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR-- 118 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 +++ LE + ++ R S +G T+ L EF LL L ++ G+V++R Sbjct: 119 --GGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRG 176 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L V G + +D+H+ LR K+ T+RG GY + Sbjct: 177 QLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 14/241 (5%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKK 57 M IL+VDD+ E+ LL+++LE EGF+V A GE AL LL + +L+LLD+MMP Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 +G + +R+ P++ L+A+G +D+V+G E+GADDY+ KPF+ EL+ARIRA LRR Sbjct: 61 SGYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRR 120 Query: 118 SHW-------SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQ 170 +++ + L+ L ++ Q +EL+ EF LL LA+ Sbjct: 121 YERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAE 180 Query: 171 HLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + G V +RE + V G + +HI NLR KL + KT G GY+ + Sbjct: 181 NAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE---TERQFIKTQWGTGYVFIG 236 Query: 231 A 231 Sbjct: 237 E 237 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 92/229 (40%), Positives = 135/229 (58%), Gaps = 8/229 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 IL+VDD+ + ++ K LE G+ V+ A G + L + LD+ DL++LD+M+P +G+ Sbjct: 3 PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGM 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR+ ++MLTAR E+DRV GL +GADDYL KPF+ RELVAR+ AILRR Sbjct: 63 EITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + S + + ++P +EA GQ LELT TEF LL LA++ +V+SRE Sbjct: 123 KPVK------SSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSRED 176 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L ++V G DR +D+++S +RRK+ +T RG GY V Sbjct: 177 LIEKVWGADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRFV 224 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 138/232 (59%), Gaps = 7/232 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 ++L+++D++ + ++K L+ E + IV H+G++A+ + D ++LD+M+P +G Sbjct: 6 KRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGE 65 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + K +R Q P++MLTA+ E DR+ GL++GADDY+ KPF+ +ELVAR+RAI+RR++ Sbjct: 66 EICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + + L L ++ E + +ELT TEF LL + Q+ G+V SR+ Sbjct: 126 EGLKAHLIE----LNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDE 181 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L +VLG +DR ID+HI NLR K+ + + + T+ G GY V S Sbjct: 182 LVVKVLGYDYVGYDRTIDVHIKNLRHKIE--CEYYKYIVTVYGVGYRFVKVS 231 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 8/231 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 IL+VDDD+ + LL++ LE + F V+ A + E+A + S +D L+LD+MMP +NG Sbjct: 4 KTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGF 63 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R P++ L+AR +++D++ GL LG DDY+ K + E+VAR++A+LRRS Sbjct: 64 AFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRS-- 121 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 N LE L LN +E + DG+ + LT E+ LL L +H V S + Sbjct: 122 ---ASNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQ 178 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L ++ + +H+S LR K+ + + + G GY Sbjct: 179 LLDKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEGG 227 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 321 bits (825), Expect = 9e-87, Method: Composition-based stats. Identities = 98/241 (40%), Positives = 143/241 (59%), Gaps = 13/241 (5%) Query: 1 MNK-ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL---DDSIDLLLLDVMMPK 56 M+K ILL++DD +L L+ + L M + V A G++ LD+L + +IDL++LD+M+P Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 57 KNGIDTLKALR-----QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARI 111 +G+ + +R QT++ P++MLTA+G DRVLGLE+GADDY+ KPF REL+ARI Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120 Query: 112 RAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQH 171 RA+LRR EQ D+ S +L L + P E + D + + LT +F LL+ A H Sbjct: 121 RAVLRRH---EQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATH 177 Query: 172 LGQVVSREHLSQEVLGKR-LTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 G+V++RE L Q + DRAID+HIS LR + D T+RG GY + Sbjct: 178 AGKVLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFAT 237 Query: 231 A 231 Sbjct: 238 D 238 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 135/232 (58%), Gaps = 4/232 (1%) Query: 1 MNK--ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKK 57 M K IL+VDDD+++ + L EGF V+ AH+GE+AL +++++ I L +LD+MMP Sbjct: 16 MEKNSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHM 75 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 +GI+ + +R+ H P++ L+A+ S++D+V+G GADDY+ KPF+ E +AR++A LRR Sbjct: 76 DGIELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + Q + + L ++ + G+T+ LT TE+ +LYL+A +V + Sbjct: 136 YTYFNQNA-VQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFT 194 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 E + + V +R + + +HI+ LR K+ + + + + G GY + Sbjct: 195 IEEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 3/229 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M KIL+V+DD ++ + ++ L GF V A DG L + DL+LLD+M+P +G Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LR+ + PV+M+TAR E+D + GL +GADDY+ KPFN ELVAR+R+ + R Sbjct: 61 FAVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYE 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + ++ AL + D + + T EF LL LA+H V SRE Sbjct: 121 RILASVKPEQH--VVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSRE 178 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L + V G + +HI+ +R K+ + + +T+RG GY Sbjct: 179 ALFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 2/231 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 + ++V+D+ EL +++ LE G+ V +AHDG +A+DL + D+++LD+ +P +GI+ Sbjct: 65 RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW- 120 + LR V+MLTAR E+D ++GL +GADDY+ KPF+ REL+AR++AILRR Sbjct: 125 VCRRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPK 184 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + Q+ + L AL ++ +E + + LT TEF LL LA+ V SR Sbjct: 185 TGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQ 244 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L V G+ + +D+HI +LRRKL D + +T+RG GY M + Sbjct: 245 LIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRMGTG 295 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 130/235 (55%), Gaps = 5/235 (2%) Query: 1 MNKI--LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKK 57 M I L+V+D+ ++ +++K+ L + F+ + G +A+ L +S D ++LD+ +P Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 +GI+ + +R+ +++L+ARGS+ D+VLGL GADDY+ KPF+ ELVARI A LRR Sbjct: 61 DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q++D L +D +++N D + + L+ EF LL+ LA++ QV S Sbjct: 121 QDRWL--QDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFS 178 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + L V G + I ++I +R K+ + +T+ G GY +++ Sbjct: 179 KSQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFSTSN 233 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 124/228 (54%), Gaps = 2/228 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 KIL++DD++++ LL+ L+ E + V + A+ ++ IDL +LD+M+P NG Sbjct: 21 KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ + P+IMLTA+ E D++ GL LGADDY+ KPF E+VAR++A LRR Sbjct: 81 LCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKKY 140 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + L + L LN E DG+ + LT TEF++L++L G VVS E L Sbjct: 141 SPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIEEL 200 Query: 182 SQEVLGKRLTP-FDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 V I +HI +LR KL D D + KT+ G GY + Sbjct: 201 FHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 139/229 (60%), Gaps = 10/229 (4%) Query: 5 LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGIDTL 63 L+V+DD +++ L++ +L E F V VAHDG++ L++ + +L++LD+M+P +G + Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 KALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR T TP+IMLTA+ E D+VLGL++GADDYL KPF RE +AR+ A+LRR+ Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 Q TL L + P +A + +T++LT EF LL +LA++ G+ + RE Sbjct: 129 YNQP------DDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQ 182 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L ++V G R ID HI LR+K+ + G+ + +T+ G GY + Sbjct: 183 LLEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLE 231 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 93/233 (39%), Positives = 139/233 (59%), Gaps = 4/233 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 +IL+V+DD ++ +L L E + V+ + DG + L LL+ + D L+LD+M+P +G+ Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 61 DTLKALRQ-THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + R T TP+I+ +AR SE+ R+LGLELGADDYL KPF+ ELVAR++A+LRR Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + D G TL+V L ++P +EAS DG L+LT EF LLY A+H G+V SR Sbjct: 125 ALARDSRIDAG--TLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRM 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L V G + ++ ++ HI+ LR K+ T+ GRGY + + Sbjct: 183 DLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPG 235 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 134/232 (57%), Gaps = 3/232 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 KIL+VDDD L +LL+ L +GF V + EQ LL +S L++LD+M+P ++G+ Sbjct: 6 KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65 Query: 62 TLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR P+IM+TA+G E+DR++GLE+GADDY+PKPFN REL+ARIRA+LRR Sbjct: 66 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRR-QA 124 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 +E + LN G +E + + + LT EF +L L H + +SR+ Sbjct: 125 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 184 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L G+ + +R+ID+ IS LRR + + + +T+ G GY+ V Sbjct: 185 LMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 89/229 (38%), Positives = 135/229 (58%), Gaps = 7/229 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 IL++DD+ +L LL+ L+ EGFNV A +G + L + D DL+LLD+MMP+ G+ Sbjct: 3 QTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGL 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D ++A + +TP+I+LTA+ + D+++GLELGADDY+ KPFN RE++AR+RA+LRRS+ Sbjct: 63 DFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYK 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ Q L + +VL QT++LT +EF +L L G V SR Sbjct: 123 AQPQA------DVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLD 176 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L G+ ++R ID+HI NLR K+ + +T+ G GY Sbjct: 177 LLDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 9/226 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 ++L+VDDD L +L +L EG+ DG +A+ D++LLD+M+P +NG+ Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R P++MLTA+G +D V GLE GADDY+ KPF ELVAR+RA LRR Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETG 136 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + L + + ++ + + DG + LT EF LL LA+ QV +RE L Sbjct: 137 QAEN--------LSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELL 188 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 ++V G R R +++H+ LR K+ + T+RG GY Sbjct: 189 LEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 91/229 (39%), Positives = 131/229 (57%), Gaps = 4/229 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+VDD+ + +L+ L + G+ VI A +GE+AL + + L++LDVMMPK +G Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR+ P+IMLTA G DR+ GLE+GADDY+ KPF+ +EL ARIR++LRR+ Sbjct: 67 VCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKI 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 N S + + L ++ +++ + + + LTG EF+LL LL G+ SR + Sbjct: 127 TTNLGVPN-SGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185 Query: 182 SQEVLGK--RLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 QEV G R +D+HIS LR KL D T RG GYL Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 99/229 (43%), Positives = 143/229 (62%), Gaps = 4/229 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 +L+VDDD +L +LL + LE G+ V GE ++ + S +++LD+MMP K+G++ Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ LR PVIMLTA+G + DR++GLELGADDY+ KPFN REL+ARI+A+LRR+ Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKG-- 124 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 +NN+ S + V +VL+ Q+ +G +LEL+ TEF LL L + G+ ++R+ L Sbjct: 125 -PENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLM 183 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 V GK FDR+ID+HIS LR D KT+ G GY+ VS Sbjct: 184 TSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVSE 232 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 129/229 (56%), Gaps = 4/229 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 KIL+VDD+ E+ L++ L+ E + V + ++AL+ + IDL +LD+M+P +G+ Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R H P+IMLT + +E+D++ GL +GADDY+ KPF EL+AR++A LRR Sbjct: 64 ICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKF 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + LV+N E + + L LT TEF++L +L ++ G VVS E L Sbjct: 124 SGV--KEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELL 181 Query: 182 SQEVLGKRLTP-FDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 E+ G + I +HI +LR K+ D D + KT+ G GY + Sbjct: 182 FHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIE 230 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 319 bits (819), Expect = 4e-86, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 134/232 (57%), Gaps = 10/232 (4%) Query: 1 MNK---ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPK 56 M K IL+V+D+ ++ L LE GF G++A + DL+LLD+M+P Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 57 KNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 K+G++ K LR Q P+IMLTAR E+DR+LGLELGADDY+ KPF+ RE+VAR++A+LR Sbjct: 61 KDGMEVCKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 RS+ +++ S + ++L+ +E S G +L+LT +EF +L ++ +V Sbjct: 121 RSNTPQEE------SKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVF 174 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 SR L +G + +DR ID HI NLR+K+ ++ G GY Sbjct: 175 SRNELLDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGF-NVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 +K+L++DD++E+ L+K +L EG V+ A L ++ DL++LD+M+P G Sbjct: 38 SKVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEG 97 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K +R P+I L+A+G E D+++GL +G DDY+ KPF+ +E+ R++A LRR Sbjct: 98 YDICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVS 157 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + Q ++ LN + E + + +ELT E L+ QH +V+S+E Sbjct: 158 YLQPSQTGT----IIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKE 213 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L Q V G+ D + +HI LR K+ + + T++G GY V Sbjct: 214 TLYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFV 263 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 135/233 (57%), Gaps = 3/233 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M KIL++DD+ + L + +L+ EGF V A +G + + L+ DL+LLD+M+P +G Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K + + PVIM++A+ +D+VLGLELGA+DY+ KPF++REL+ARI+ +LRR Sbjct: 61 YDLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 +++ + L L +NP + +G + LT E+ +L L + ++ +R+ Sbjct: 121 HNDEA--KYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRD 178 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L + V G + R++DM I LR+K+ + + + KT+ G GY + S Sbjct: 179 ELLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGDS 231 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 318 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 127/227 (55%), Gaps = 7/227 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 ++L+VDDD + +++ L+ G+ V +A DGE AL L + DL++LD+M+P G+ Sbjct: 9 ARVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGL 68 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + LR+ + PV+MLTA G E DRV+GLE GADDY+ KPF+ RELV R+ +ILRR+ Sbjct: 69 EVCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 128 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 S+ + L AL L+ + + DG L LTG EF LL L +H G+ SR Sbjct: 129 SQPAEG-----EVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAE 183 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 L ++V G + +H+ LR K+ T+ G GY Sbjct: 184 LLEQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYR 229 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 318 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 5/233 (2%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKN 58 M K+L+++DD ++ L L+ + V A DG + ++++ ++ L+LLD+++P Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G + + +R + P+I L+ + D+V GL+ GADDYL KPF+ EL ARI+A LRRS Sbjct: 61 GYEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRS 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 N + L ++ + G + L E LL LL ++ V S Sbjct: 121 KM---NANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSA 177 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 E + ++ G + + +HISNLRRK+ + KT+RG GY +A Sbjct: 178 EKIYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFSTA 230 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 123/231 (53%), Gaps = 6/231 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 +ILL++DD + + ++ L +G VI A G L+L D++L+D+M+P +G Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + LR++ P+IM+TAR D V GLE GADDY+ KPF +EL ARIRA+LRRS Sbjct: 79 ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + +++ L + P +G+ L LT TEF LL LA +V SRE Sbjct: 139 AGGPAG-----EVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQ 193 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L + V G R +D+H+ LR K+ + T+RG GY + A Sbjct: 194 LLERVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQPA 244 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 7/228 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDT 62 ILL++DDR + +++KE LE E F V+ DGE + + L+L+D+M+PK +G Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R + + P+I+++A+ ++ D+V LGADDY+ KPF+ EL AR++A +RR S Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 QQ L+ + ++ + G+ + LT EF LL LA H G+V ++E L Sbjct: 123 PQQE-----DRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELY 177 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 V R + +H+ N+R KL D + +T+ G GY + Sbjct: 178 AAVWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIG 224 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 136/231 (58%), Gaps = 2/231 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 N+IL+V+DD E+ LL+ ++ V +DG AL+ DL+LLD+ +PK NG+ Sbjct: 8 NQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGV 67 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + LR+T TP+IM+TA+ E+D+VLGLE+GADDY+ KPF+ REL AR +A++RRS Sbjct: 68 EVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDA 127 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + QQ N D+ + L+ L +N + + +G+ ++L+ EF LL LLA + G+ SR Sbjct: 128 ANQQTN-DSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSE 186 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L + G + ++ ++ HI+ LR K+ + T G GY Sbjct: 187 LLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 131/227 (57%), Gaps = 5/227 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 +L+++D++ L +LK LE EG+ V +HDG L+L + D+++LD+M+P +G + Sbjct: 9 TVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEE 68 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ +TP++MLTA+GSE +++ GL +GADDY+ KP + RE++AR++ ILRR Sbjct: 69 IARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKE 128 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + + + ++ ++ G + LT TEF +L LA + +V SRE+L Sbjct: 129 PGRIQQE----IITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENL 184 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + G R ID HI NLRRK+ + KT+ G GY Sbjct: 185 ADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 128/232 (55%), Gaps = 6/232 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M I++VDD++ L + L+ +G+ I+A DGE+AL L+ D+ DL+LLD+ MP +G Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ + +R PVI L+ R S +D+V ELGADDY+ KPF+ EL ARI+A +R Sbjct: 61 LEVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYA 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + L LV++P + +G+++ LT E LL A+H QV + E Sbjct: 121 MNPSSEGPK-----LRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHE 175 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L + T + + +HIS+LRRK+ + + +T+RG GY V Sbjct: 176 QLYDRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVPG 227 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 124/230 (53%), Gaps = 5/230 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 IL+ DDD + ++ LE EG+ VI A DGEQA+ L D++++D+MMPK +G++ Sbjct: 5 TILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLE 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + ++ P+I+L+A+ +D+++G ++G DDY KPF+ EL R++A+LRRS Sbjct: 65 ASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKAV 124 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 +++ D L+ + + G+ + LT EF +L+L+A H Q+ SR L Sbjct: 125 PEKKGKD----VLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQL 180 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 +++ + + +HI LRRK+ KT+ G GY + Sbjct: 181 LEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAP 230 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 138/231 (59%), Gaps = 2/231 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 KIL+V+DD ++ ++ LLE E + VI A +G L LLD++IDL++LD+MMPK NG+ Sbjct: 10 KILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLLDETIDLVILDIMMPKLNGLKV 69 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R+T PV+ LTA+ E D++LGL +G DDYL KPF+ EL+ R++A+LRR + Sbjct: 70 CEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRRYQVYQ 129 Query: 123 QQQNNDNGSP-TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + N+N + +E+ ++ LN E DG +E++ E+ +L L+ QH G++ S +++ Sbjct: 130 GKSTNENEAEKIIEIGSIKLNTAFNEIVADGNKVEVSDLEYKILRLMMQHPGKIFSTQNI 189 Query: 182 SQEVLGKRL-TPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + V + + +HI LR K+ + KT+ G+GY A Sbjct: 190 YESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRFEDA 240 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 127/231 (54%), Gaps = 6/231 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M IL+ DD+ ++T +L + E ++A DGE+A+ + + ++LLDVMMPK++G Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +R PVI++TARG + ++++GL++GADDY+ KPF+ E++ARIRAILRR Sbjct: 61 YEVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMT 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++N L + L +N G + LT E ++ LA + +V +R+ Sbjct: 121 K---KENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPW-FKTLRGRGYLMV 229 +L + G R +D HI LR KL D + W KT+ G GY Sbjct: 178 NLLDSLWGFDYFGDSRTVDSHIKRLRAKL-DMLEHPNWSIKTIWGVGYKFE 227 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 141/229 (61%), Gaps = 3/229 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 N IL+VDD++E+ +LL+ L+ EG++V A GE+AL +L+ + + L++LDVMMP +G Sbjct: 3 NNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGF 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R+ + P++ML+A+G ++D++ G+ GADDY+ KPFN+ EL RIRA+ RR+++ Sbjct: 63 EVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYF 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + +++++++ + + + + LT EF +LYLLA + G+V S E Sbjct: 123 LN--TKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEE 180 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + ++V ++ + + +H+S LR KL +G+ T+ G GY + Sbjct: 181 IFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIE 229 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 121/235 (51%), Gaps = 11/235 (4%) Query: 1 MNK--ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKK 57 M IL+V+DD + ++ LE G A DG +A L L DL++LD M+P Sbjct: 9 MPNAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGV 68 Query: 58 NGIDTLKALRQ-THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +G+ + R+ + PV+MLTAR E RV L GADDYL KPF+ +ELVAR++A+LR Sbjct: 69 DGLALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLR 128 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 R++ S + + L+++ ++ G+ ++L EF LL LA H G+V Sbjct: 129 RAYASGYRDCSPKN-------GLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVY 181 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 SR+ L + V G R ID+H+ LR KL + T+ G GY Sbjct: 182 SRDELLERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAGP 236 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 77/225 (34%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 5 LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDTL 63 +LV+DD ++ ++ L EGF ++ A DGE+ + L S DL+LLD+M+PK NG+D L Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 64 KALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQ 123 K +R+ PV+M++A+ ++D+ LGL GADDY+ KPF+ EL AR++A +RR+ Sbjct: 61 KIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQY-- 118 Query: 124 QQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQ 183 + + + L ++ +G+ L+LT TE+ LL L A + +V ++E + + Sbjct: 119 SAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYR 178 Query: 184 EVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 V + I++H+ LR K+ D + KTL G GY + Sbjct: 179 SVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 132/229 (57%), Gaps = 11/229 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGI 60 +L+V+D+ + L+++ + EGFNV+ A DGE+AL + ++I DL +LD+MMPK +G+ Sbjct: 3 KTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGL 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R+ TP+I+LTA+ E D++LG ELGADDY+ KPF+ + L+A+ +A+LRR+ Sbjct: 63 AVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGT 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + L+ + L +N E +G+ L L+ E+ LL L+ + G +SR+ Sbjct: 123 LNDK-------NILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDR 175 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + V G R +D +I LR KL D + T+RG GY Sbjct: 176 ILDNVWGYDYFGDIRTVDTNIKRLREKLLD---KANYIATVRGSGYKFE 221 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 93/233 (39%), Positives = 142/233 (60%), Gaps = 12/233 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDL--LLLDVMMPKKN 58 M+K+L+++D+ + +LK LE G+ V+ A +G++ LDL +++ D+ +LLD+M+P + Sbjct: 2 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G LK +R+T + PV+M+TARG E D++LG ELGADDY+ KPF+ RE+VAR++AIL R+ Sbjct: 62 GWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + S+ E +V++ +E + DG+ +ELT EF LL LL + G+VVSR Sbjct: 122 YGSQDDGKT-------EYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSR 174 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 E EV G R +D HI LR KL + KT+ G GY + Sbjct: 175 EKCLNEVWGYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEGD 224 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 7/230 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGF-NVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 +IL+VDD+++L +L++ LE EGF + AH + D+ + L +LDVM+P G Sbjct: 4 PRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGEG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +R P++ L+A+ E+D++LGL +G DDY+ KPF+ +E+ R++A LRR Sbjct: 64 YQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRVS 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 E V +N E +G+ LELT E LL ++ +++S+E Sbjct: 124 MMEAPVAETT-----TVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKE 178 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L +V G+ D + +HI LR K+ + KT++G GY + Sbjct: 179 TLFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRLT 228 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 123/233 (52%), Gaps = 8/233 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFN-VIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 KIL+VDD++E+ +LL+ +L+ EGF + G+ + + DL+LLD+M+P +G Sbjct: 11 KKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLDG 70 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +RQ P+ L+A+ +LD++LGL +G DDY+ KPF+ +E+ +++A RR+ Sbjct: 71 YSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + + ++ + G L LT EF +L L ++ Q+ S+ Sbjct: 131 Y------KEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKA 184 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L + V G+ D + +H+ +LR K+ D + T+RG GY + + Sbjct: 185 RLYEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLNTKG 237 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 7/228 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M KIL+V+DD+++ L LL+ E ++ + A+DGE A++ ++ DL++LD+ +PK++G Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 LK ++ PVI+LTARG E+D++ G LG DDYL KPF+ EL+ RI+A+LRR Sbjct: 61 FSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ L+ + +N +E +G+ +ELT E+ LL LL ++ ++ ++E Sbjct: 121 KGRGEE------EILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKE 174 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 + + + + + LR K+ + KT+ G GY Sbjct: 175 QIMDRLWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 127/230 (55%), Gaps = 6/230 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 M KIL+ +D+ + S + L+ G+ VI A +G +ALD + D+LLLD+MMP+ +G Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60 Query: 60 IDTLKALRQTHQT-PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + R + +IMLTAR E D+V+GL +GADDY+ KPF+ EL+ARI+++LRR Sbjct: 61 FAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +++ L ++ G + G +E+T TE+ LL ++ QV+SR Sbjct: 121 ETLRRRKQPRE----LVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSR 176 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + L V G+ + +D++I LR+K+ + + +TL G GY Sbjct: 177 DELLDAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKW 226 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 94/233 (40%), Positives = 132/233 (56%), Gaps = 3/233 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M +IL+VDD+ + +++ E EGF V GE AL L +++ DLL+LD+ +P +G Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 L+ +R + PVIMLTAR E+DRV+GLELGADDY+ KPF+ RELVAR+RA+LRR+ Sbjct: 61 FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + + + + L L+ R+ A+F L L EF LL LA H GQV +R Sbjct: 121 AEASRLRQQIGDAAPTSSG-LQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTR 179 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 E L +V G R +D+HI LR KL + +T G GY + Sbjct: 180 EVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIEG 232 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 5/227 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 KIL+VDD+ ++ S +K+ E +G+ VI A +G +A++ D ID++LLD+MMP +G Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKDIDIILLDIMMPNIDGFQV 63 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R P+I L+AR SE+D++ GL +G DDY+ KPF+ +EL AR++A LRR Sbjct: 64 CQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKRIP 123 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 N + L L+ ++ ++ + + T EF ++ LLA H QV S+E + Sbjct: 124 L-----NNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIY 178 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 ++V G + HI +R K R T+ G GY Sbjct: 179 EKVWGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 130/230 (56%), Gaps = 3/230 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 + IL++DD+ ++ LL L+ GF A +G AL + + IDL++ D+MMP +G Sbjct: 11 IKTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDG 70 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LK +R + P + L+A+ ++D+++GL+LGADDY+ KPFN E+V+R++A+ RR Sbjct: 71 YELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMD 130 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + +++ ++L+ + +GQ E+T EF +L LL +H G+V ++ Sbjct: 131 VFSKGEKQ--NHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKA 188 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + + V G+ + I ++IS LR K+ D + T+RG GY Sbjct: 189 SIYEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFE 238 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 129/227 (56%), Gaps = 11/227 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 IL+V+D+ +L ++ L+ EG+ V V +DG L + + DL+LLD M+P +G+D Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 LKALRQT-HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K LRQT + P+I+LTA+ DRV GL+ GADDY+ KPFN EL+AR+RA LRR Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR---- 121 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 N++ L+ L LN +E + +ELT EF LL L H QV+SR+ + Sbjct: 122 ----NHEEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQI 177 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + V G I++++ LR KL ++ +T+RG GY++ Sbjct: 178 LERVWGYDFMGDSNIIEVYVRYLRLKLEAEQEK-RLIQTVRGVGYVL 223 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 132/230 (57%), Gaps = 4/230 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 + KIL+ DD+ + + L+ + I A+DG++AL+ + + DL++LD+MMPK G Sbjct: 4 IKKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K +R+ P+IMLTA+G E+DR++GLE+GADDY+ KPF+ RE+V RI+ I RR Sbjct: 64 TEVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVG 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + + ++ + E + + +++T E +LYLLA + G+V+SRE Sbjct: 124 --NANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSRE 181 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + +V G R +D I +R+K+P+ + KT+ G GY Sbjct: 182 EILDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWS-IKTVYGIGYKFE 230 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 80/228 (35%), Positives = 138/228 (60%), Gaps = 7/228 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSID--LLLLDVMMPKKNGI 60 KIL+VDDD+E+ LL+ EG+ + A++G+ A+ L+ D L++LD+MMP+ NG+ Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNGM 61 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D ++ +R+ P+++L+A+ +++D++ GL GADDY+ KPFN E++AR++++LRRS Sbjct: 62 DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRS-- 119 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEA-SFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + Q ++ L V LV+N E + G ++LT EF +LYLLA H +V S + Sbjct: 120 --ENQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSAD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 + + V + + + +H+S+LR K+ G +T+ G GY Sbjct: 178 DIFERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYK 225 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 11/232 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGI 60 + +V+DD ++ L++ LE GF V G + + +L LLD+M+P +G+ Sbjct: 3 QTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADGL 62 Query: 61 DTLKALRQTHQT---PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + + +R + PVI LTA+ SE D++ GL+LGADDY+ KPF+ REL+ARI+A+LRR Sbjct: 63 EICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLRR 122 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + +V++ G + G + T TEF LL LA+H G+V + Sbjct: 123 FERPLPPA-------VVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFT 175 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 R+ L V + R++D+++ +R K+ + + + KT+RG GY Sbjct: 176 RDQLLDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFE 227 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 130/230 (56%), Gaps = 7/230 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 MN+IL+ +D+ + S + L+ GF+V A +G +A+ + D++LLDVMMP+ +G Sbjct: 1 MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDG 60 Query: 60 IDTLKALRQ-THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + A+R +IMLTAR E D++ GL GADDY+ KPF+ ELVARI+A+LRR Sbjct: 61 FEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRV 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +++ S L+ ++ ++ + GQ+++LT TE+ L+ L Q+ V+SR Sbjct: 121 EKVKRK-----DSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSR 175 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + L V G + +D++I LR+K+ D + +TL G GY Sbjct: 176 DALLDAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKW 225 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 90/229 (39%), Positives = 133/229 (58%), Gaps = 14/229 (6%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M +IL+VDD+ ++ ++L+ L EG+ V A DGE+ L L + DL++LDVM+PKK+G Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 L+ +++ +TPVIMLTAR D V G E+GADDY+ KPFN++ L+AR++++LR Sbjct: 66 WSILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLR--- 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + N+ +E+ LV+N S +EL E+ LL L ++ +SRE Sbjct: 123 -----KTNNMVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSRE 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L EV G DR ID HI NLR+K+ KT+RG GY + Sbjct: 178 KLLNEVWGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKL 221 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 144/232 (62%), Gaps = 5/232 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 +IL+V+DD L L ++ L G +V + DG +A+ ++++ DL++LDVM+P +G+ Sbjct: 10 PRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDGL 69 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R + +P++MLTAR ++D+VLGLE+GADDY+ KP R L+ARIRA+LRRS Sbjct: 70 TVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRS-- 127 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + ++ LE LV++ G + + +G+ ++ T E+ LL+LLA + G+++SRE Sbjct: 128 --ENAPSEEIPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSRED 185 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + + + G DR+ID+ IS +R K+ D + KT+R +GYL V Sbjct: 186 IFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEG 237 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 4/230 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDT 62 +L+VDD+ + +LL+ L EGF V A +G +AL++ + D++LLD+M+P +G Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 K +R+ ++MLTAR D+V GL +GADDYL KPF EL+AR+ +++RRS ++ Sbjct: 76 CKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAITQ 135 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 + + LE L + P +E ++E T EF L LA+ + SRE L Sbjct: 136 SIRRQEAA---LEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELV 192 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + G R +D HI N+R K G+ +T+ G GY A Sbjct: 193 NLIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNGAG 242 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 131/232 (56%), Gaps = 9/232 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 K+L+++DD + L++ ++ G++ I A DGE+ L+L +S D ++LD+M+PK NG + Sbjct: 6 KVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGWE 65 Query: 62 TLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 K +R + P+IMLT +G D + GL +GADDY+ KPF+ EL+AR++ +LRR+ Sbjct: 66 VCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTIL 125 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 SE +++ L+ D ++++ + + +++ E L Y LA + QV++R+ Sbjct: 126 SESEKDR------LQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQ 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L V G R +D+HI +R KL + K T+RG GY S Sbjct: 180 LLDRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAKWS-IVTIRGVGYRFEENS 230 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 91/234 (38%), Positives = 133/234 (56%), Gaps = 5/234 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 IL+VDDD E+ +LL L+ GF A DG + +L+ DL++LDVM+P +G+ Sbjct: 6 HILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGDDGLT 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR + PVIMLTA + DR++GLELGADDY+ KPFN RELVARIR +LRR+ Sbjct: 66 LCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRARAL 125 Query: 122 EQ---QQNNDNGSPTLEVDALVLNPG-RQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + + + S T+ L+ R + DG + L+G E+ LL ++ +V+S Sbjct: 126 PENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRVMS 185 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 R+ L G+ FDR+ID+ +S LR +L D KT+RG GY + + Sbjct: 186 RDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATD 239 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 122/227 (53%), Gaps = 9/227 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 +IL+VDDD L ++ +L +GF + DG QAL++ DL+LLD+M+P +GI Sbjct: 32 ARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDGI 91 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R P++MLTA+ D V GLE GADDY+PKPF ELVAR+RA LR Sbjct: 92 EVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR---- 147 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + TL + + ++ + G+ + LT EF LL LA+ QV +RE Sbjct: 148 ----PGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTREL 203 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 L ++V G R R +++H+ LR K+ + T+RG GY Sbjct: 204 LLEQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 132/233 (56%), Gaps = 7/233 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 IL+V+D++E+ ++ L +G+NV ++G + L ++++ I L ++D+MMPK +GI Sbjct: 5 NILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGIT 64 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 LR+ + PVIML+A+ E+D+++GL +GADDY+ KPF EL+AR+ + LRR Sbjct: 65 LTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKY 124 Query: 122 -----EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 ++Q ++ + L LN +E + DG+ ++ T EF +L LL ++ G+V Sbjct: 125 LNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNAGRVF 184 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 S + + + V + D + +H+ N+R K+ + K + G GY + Sbjct: 185 SADEIYERVWNENAINTD-TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIE 236 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 124/230 (53%), Gaps = 5/230 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 + ILLVDD++ + + L G+ V A +G+ AL + DL +LD+MMP NG Sbjct: 6 STILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGY 65 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + LR PV+ L+AR SELD+V+GLE+GADDYL KPF REL+AR+RA+LRR Sbjct: 66 ELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQM 125 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + ++ + + L+ R A +++LT EF LL L + G+V SRE Sbjct: 126 DAEPMAGES----ITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASRED 181 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L +E G + +D HI LR KL +T+RG GY + Sbjct: 182 LLREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 95/228 (41%), Positives = 127/228 (55%), Gaps = 11/228 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDT 62 +L+VDD+ + L++ L E V+ A DG AL + D+ DL+LLDVMMP+ +G T Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ +R+ PVIMLTARG DRV GL +GADDY+ KPF+ REL AR++A+LRRS Sbjct: 68 LQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRS---- 123 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 + + +L + P + A + G+ L LT EF LL LLA H GQV SRE L Sbjct: 124 --AGQVEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLL 181 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + G R +D HI NLR KL + T+ G GY Sbjct: 182 DRIWGPDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRFAE 226 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 129/226 (57%), Gaps = 4/226 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 ++L+VDD++ L ++ L GF+ AH G QA+D S D+++LD+ +P+ +G++ Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R ++MLTARGSE D++ GL LGADDY+ KPF+ RELV R+ A+LRR S Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 L V L+L+P + T+ELT TEF LL LA GQV++R L Sbjct: 162 TTPPQVTTP---LIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDL 218 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 EV +R +D+HI NLRRKL G + T+RG GY Sbjct: 219 VTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 136/228 (59%), Gaps = 4/228 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KI +VDD+ ++T ++K LE G+ V VA++G A++L + + DL++LD+M+P G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D + LR+ + P+IMLT + E D + GL++GADDY+ KPF+ R+LVAR++A+LRR+ Sbjct: 70 DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRT-- 127 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 E + N +L + L++N E G + LT E+ +L + ++ G++ +RE Sbjct: 128 -EDELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREE 186 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L LG+ +DR ID HI NLR K+ D + T+RG GY Sbjct: 187 LIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 4/230 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGF-NVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGI 60 KILLVDD++ + +L L+ E F ++ A +G + L L+ + D++LLDVM+P +G Sbjct: 18 KILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDIDGF 77 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R TP++ +TAR S+LD++ GL +G DDY+ KPFN E+ ARI LRR H Sbjct: 78 ELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQHM 137 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 +++ N + + L + L P + + + + T E LL L H ++ + E Sbjct: 138 TQEPNNGEKLN--LHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTAEQ 195 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L ++V G D+ + MHIS LR+K+ + + LRG GY + Sbjct: 196 LYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIP 245 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 88/236 (37%), Positives = 134/236 (56%), Gaps = 11/236 (4%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 IL+ DDD+++ LL+ LE EG+ V A DG +AL + IDL+LLD+MMP+ +G Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ +R+T PVIM++A+G + D+++GL+LGADDYL KPFN E +AR+R+ LRR++ Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 123 QQQNNDNGS--------PTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 + D+ S L V L L+ + L+LT EF +L L H G+ Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPGR 190 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 V +++ + +E G+ + + IS LR KL D + T+RG GY M + Sbjct: 191 VFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRMEA 244 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 124/232 (53%), Gaps = 5/232 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 + IL+ DD++++ +L LE GF V+ +G + L L+ L++LD+M+P G Sbjct: 5 HTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIPGE 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + A+R P++MLTA+ + DR+ GL++GADDY+ KPFN E+VAR++AILRR+ Sbjct: 65 EVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRTML 124 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + LV++ Q G ELT TE+ LL +L++H +V SRE Sbjct: 125 DHPLADRLE----YRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREE 180 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L + V G R ID H+ NLR K+ D + +T+ G GY Sbjct: 181 LIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGGDG 232 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 83/263 (31%), Positives = 129/263 (49%), Gaps = 42/263 (15%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 IL+V+D+ ++ L++ L EGF + DG+ ALD DL++LD+M+P +G++ Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 63 LKALRQTHQT---PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +RQ ++ ++MLTARG E+DR++GL GADDY+ KPF+ RELVAR+RA+LRRS Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEAS------------------------------ 149 Q T + ++ ++ AS Sbjct: 123 RGSHQPRT-----TYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQN 177 Query: 150 ---FDGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRR 206 LELT EF LL + G+V +R L ++ G+ +R +D HI+ LR+ Sbjct: 178 QLEIAQIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIARLRK 237 Query: 207 KLPDRKDGHPWFKTLRGRGYLMV 229 K+ + KT+ G GY Sbjct: 238 KIEPDPSAPTFVKTVVGVGYRFE 260 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 93/234 (39%), Positives = 137/234 (58%), Gaps = 9/234 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD----DSIDLLLLDVMMPK 56 M +IL+VDD+ + ++L+ LE EGF V A DG AL L + +DL+LLDVMMP Sbjct: 1 MTRILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPG 60 Query: 57 KNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +G++ L+ LR T VI++TAR E+D+++GL +GADDY+ KPF+ RE+ AR++++LR Sbjct: 61 MDGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 R P L D L ++P +E + DG + LT EF LL+ L + G+V Sbjct: 121 RRR-----DGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVF 175 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 SR L ++V G +R +D+HI NLR +L D T+RG GY + Sbjct: 176 SRAQLLEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFIG 229 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 92/227 (40%), Positives = 131/227 (57%), Gaps = 7/227 (3%) Query: 5 LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGIDTL 63 LLVDDD + L + LE GF+V+ A DG AL L+ D+++LD+M+P+ +G L Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 64 KALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 +R+ PVIMLTA G E DR++GL+ GADDYL KPF+ RELV+R+RA+LRR+ + Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 + L L+++ ++ L LT EF LLY LA H QV SREHL Sbjct: 122 ADEGK-----LLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLL 176 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 V G R +D+H++ LR+KL + + +T+ G+GY V Sbjct: 177 DRVWGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFV 223 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 6/229 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFN-VIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 IL+VDD++ + ++K +LE EG+ ++ A E+A+ ++ + +DL++LDVMM +G + Sbjct: 6 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +R+ P+ LTAR S+ D++ G +GADDY+ KPFN EL ARIRA L+R++ Sbjct: 66 ACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTY-- 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 Q + + T D +P E G+ + + LL +H V+S++ + Sbjct: 124 --QSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQI 181 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 ++V G + + +HI LR K+ + T+RG GY + Sbjct: 182 YEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIP 230 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 78/227 (34%), Positives = 113/227 (49%), Gaps = 8/227 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 ++L+V+DD + + L GF V A DG ALD + DL++LD M+P +G + Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R P+I+LTA GS +R+ GLE GADDY+ KPF+ RELV R+++ILRRS Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + T + L+ G+ L LT EF LL L +H GQ SRE L Sbjct: 161 LTPEA------TFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQL 214 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + V G + + + LR K+ T+ G GY + Sbjct: 215 LKSVWGWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 91/230 (39%), Positives = 136/230 (59%), Gaps = 3/230 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 I +VDD ++ L+ + L EG+ + V DG + LLD DL++LDVMMP ++G+ Sbjct: 5 QHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDGL 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R TPV+ L+AR +LD +LGLE+G DDYL KPFN REL+AR++A+LRR+ Sbjct: 65 SLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRATP 124 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEAS-FDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + ++ + VLN +E DG ++ L+GTEF LL L + G++V+R+ Sbjct: 125 ASEGASSLLEGS-IRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVTRD 183 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L +V G+ PFDR+ID IS LRRK+ + +T G GY V Sbjct: 184 ELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 141/229 (61%), Gaps = 10/229 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+++DD +++ LL+ L+ EGF+V A+DG++ L++ S D++LLDVM+PK +G++ Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R+T Q P+IMLTA+ D+V+G + GADDY+ KPF++ EL+ARI+A+LRR+ S Sbjct: 64 VCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKKS 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFD--GQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + E + L +N E D ++L+ EF LL L + G V+SR+ Sbjct: 124 VVHKG------IFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + +EV G D +D++I LR K+ DR + +T+RG G++ Sbjct: 178 KILEEVWGFDYIGNDNILDLYIKYLRDKI-DRPYERKFIQTVRGIGFIF 225 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 140/228 (61%), Gaps = 7/228 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSID--LLLLDVMMPKKNGI 60 KIL+VDDD+E+ LL ++ EG+ I A+ G++A+ L + D L++LD+MMP +G+ Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSGM 61 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D +K +R+ Q P+I+++A+ +++D++ GL GADDY+ KPFN E++AR++++LRRS Sbjct: 62 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ- 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEA-SFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + ++ LEV L + E + G+ ++LT EF +LYLLA H +V S + Sbjct: 121 ---NEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSAD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 + + V + + + +H+S+LR K+ + DG +T+ G GY Sbjct: 178 EIFERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYK 225 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 136/233 (58%), Gaps = 11/233 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNG 59 M I +++DD ++ LL + EGF+V +G+ A + + + D+++LD+MMP+ +G Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDG 60 Query: 60 IDTLKALRQTHQ---TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 ++ K +R + P+IMLTA+ +E+D+++GLELGADDY+ KPF+ REL+AR++A+LR Sbjct: 61 LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 RS + L ++P + E + GQ + LT T+F LL L G+V+ Sbjct: 121 RSKSLHFPTAKPE----YKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVL 176 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 SR+++ + V +DR ID+HI LR L + + KT+RG GY Sbjct: 177 SRDYIIEHVWAWDKDVYDRTIDVHIKKLRELLKEYGN---CIKTIRGVGYKWE 226 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 132/232 (56%), Gaps = 9/232 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M +L+V+D+ + +++E LE G+ V VA +G++ L + DL+LLDVMMP +G Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ L+ R T Q PVI LTAR +ELD+VLGLELGADDY+ KPF+ EL+AR+RA LRRS Sbjct: 82 LEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRS- 140 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + L L L+P + G+ ++LT +EF L+ + G+V +R Sbjct: 141 ------SEPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRL 194 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 E L + +R ID+H+ NLR K+ +T+ G GY + Sbjct: 195 E-LLEQLQEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPD 245 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 90/231 (38%), Positives = 131/231 (56%), Gaps = 12/231 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 +L+V+D+ L +LL+ LE EG++V VA DGE AL +++ DL+++D M+PK +GI Sbjct: 3 AHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGI 62 Query: 61 DTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + + LR +T P+IMLTARG E DRV GL+ GADDY+ KPF+ EL ARIRA+LRR Sbjct: 63 EVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRR 122 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + +E + ++ + + L TEF LL L QH G+V S Sbjct: 123 IRPGLAE-------DVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFS 175 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 RE L V G + R +D+H+ LR+ L + K+ +T+R GY Sbjct: 176 REQLLDAVWGSDVYVEARTVDVHVGRLRKAL-NNKEERDPIRTVRSAGYAF 225 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 7/229 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 KIL+VDD+ + +L++ L +G+N++ A +G++AL + S L++LDVMMP+ +G Sbjct: 3 TKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGW 62 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +R+ + P++MLTAR D+V GL++GADDYL KPF EL+AR+ A+LRR+ Sbjct: 63 EVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRA- 121 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 N + L L ++ + + LT EF LL LL + QV +R+ Sbjct: 122 ----VVNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRD 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L ++ G +R +D HI ++R KL +T+ G GY + Sbjct: 178 QLLLKIWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKL 226 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 95/234 (40%), Positives = 136/234 (58%), Gaps = 6/234 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 IL+V+D +L +L L G+ V A DG AL L DL++LD M+P+ +G+ Sbjct: 6 PTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGL 65 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + L+ +RQT TPV+MLTAR E D V+GLELGADDYL KPF REL+AR+RA+LRR Sbjct: 66 EVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQR 125 Query: 121 SEQ--QQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +Q Q + + L LVL+P + Q L+LT TEF +L LL ++ G+ SR Sbjct: 126 IQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSR 185 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 +L + G+ DR++D + LR+KL D D +T+ G GY + + + Sbjct: 186 NYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRLQAEA 236 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 134/232 (57%), Gaps = 9/232 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 ++L++DDD LT+LL E L GF V A L L D DL++LDVM+P +G+ Sbjct: 16 TRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGL 75 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R + P+IMLTARG DR++GLE+GADDYLPKPF RELVARI+A+LRR Sbjct: 76 AVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGTR 135 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + + L + AL +N + + LELT EF LL LA++ G+V+SR+ Sbjct: 136 DDAEA--------LRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDR 187 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + G +DR+ID+ +S LR+KL D + +T+RG GY + Sbjct: 188 ILDGTRGIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIGGG 239 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 8/230 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGI 60 N IL+VDDD+ + LL++ LE + F+V A D E+A + ++LD+MMP +NG Sbjct: 5 NTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGF 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + +R P++ L+AR ++D++ GL LG DDY+ K + E+VAR++A+LRRS Sbjct: 65 ELCRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSAT 124 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + L+ L LN +E DG + LT EF LL + A+H V + + Sbjct: 125 RRPMEER-----VLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQ 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L + I +H+S LR K+ + + + G GY Sbjct: 180 LLAKFW--DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFEG 227 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 130/231 (56%), Gaps = 11/231 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 MN IL+++D++ ++ ++K LE EG+ V +G +++ + IDL++LD+M+P +G Sbjct: 1 MNNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K LR+ + MLTA+ + D++ GL +GAD+YL KP + REL AR+ A+ RR Sbjct: 61 EEVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVG 120 Query: 120 WSEQQQNNDNGSPTLEVDA--LVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 ++ + + L+++ ++ G+ + LT EF +LY+LA + G+V + Sbjct: 121 CKKE--------NVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFT 172 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 RE + + G DR+ID+HI NLR+K+ + + T+ GY Sbjct: 173 REAIIERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >UniRef50_Q188S4 Putative lantibiotic resistance two-component response regulator n=6 Tax=Clostridium difficile RepID=Q188S4_CLOD6 Length = 230 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 129/228 (56%), Gaps = 1/228 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 M+KIL++DD+ +L LL++ L+ +G V++A+DG+ ++L DL++LD+MMPK NG Sbjct: 1 MSKILIIDDEMDLVMLLEDELKAKGHEVLIAYDGQAGIELSKQEPDLIILDIMMPKMNGF 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +A+R P+I L+A+ SE D++ GL G DDY+ KPF REL+ARI A LRR Sbjct: 61 EVCQAIRDDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 S+ N +N TL L L + DG+ ++LT E+ ++ LLA H GQV SRE Sbjct: 121 SQY-INEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQ 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + ++V G + + +R K + T+ G GY Sbjct: 180 IYEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGYKW 227 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 135/232 (58%), Gaps = 3/232 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD--LLDDSIDLLLLDVMMPKKNG 59 ++IL++DDD+ L +LL++ E V A G + D+++LD+M+P +G Sbjct: 3 HRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDIDG 62 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +TLK +R Q PVIMLTAR + DR++GLELGADDY+ KPFN REL+ARI+A+LRR+ Sbjct: 63 FETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRAT 122 Query: 120 WSEQQQNNDNGSP-TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 S + + S + ++ ++ + G+ + +TG E +L L H G ++R Sbjct: 123 ASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPLTR 182 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + L G+ FDR+ID+HIS +R+KL D + KT+ G+GY+ Sbjct: 183 DRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWAE 234 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 97/231 (41%), Positives = 129/231 (55%), Gaps = 5/231 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M IL+V+D+R + LL L EGF I A GE+A+ LL IDL ++DVMMP +G Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR-S 118 D +K LR+T PVI LTAR E DR+ GL LG DDYL KPF+ EL+ARI+A+LRR Sbjct: 61 FDFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTY 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + + + L ++ + LN + D + LT EF LL L +H GQV +R Sbjct: 121 QRNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTR 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 EHL V G +R +D HI LR KL + +T+ G GY +V Sbjct: 181 EHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYGN---VIQTVWGIGYKLV 228 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 84/228 (36%), Positives = 123/228 (53%), Gaps = 6/228 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGIDT 62 IL+V+DD + + L L EG+ V+ A DG L LD+S DL++LDVM+P+ NG + Sbjct: 8 ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67 Query: 63 LKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 LK LRQ TPV++L+A+G E D+++GL LGADDY+ KPF +EL+ARI+A+LRR + S Sbjct: 68 LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + + ++ + + +ELT EF LL H G+ +RE L Sbjct: 128 AGAGSPPP----VTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREEL 183 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 G R +D + LR K + F T+RG GY Sbjct: 184 LSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 127/231 (54%), Gaps = 7/231 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 IL+ DDD +L S+L + E F V +A DG +AL L + D+++LD+MMP +G + Sbjct: 6 ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGFEV 65 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + RQ P+I L+A+ E DR++GL LGADDY+ KPF+ REL+AR+++ LRR Sbjct: 66 CRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRG-- 123 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 + + E+ L ++ R E + LT TEF+LL +LA +V SR L Sbjct: 124 ---EVLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLL 180 Query: 183 QEVLGKRLT-PFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 ++ +G +R ID HI NLR+KL + T+ G GY A+ Sbjct: 181 EKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQGAN 231 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 91/238 (38%), Positives = 144/238 (60%), Gaps = 8/238 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 +IL+V+DD L L KE LE G V V +G +A++ + + DL++LD+M+P ++G+ Sbjct: 27 RILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLS 86 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R ++ P++MLTAR +LD+VLGLE+GADDY+ KP R L+ARIRA+LRR Sbjct: 87 ICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQ 146 Query: 122 EQ-------QQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 + + + +G L + LV++ +EA + Q+++LT EF LL+LLA G+ Sbjct: 147 GEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLASSAGR 206 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 V+SRE + + G DR+ID+ +S +R K+ D KT+R +GYL V + Sbjct: 207 VLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFVKEA 264 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 309 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 126/231 (54%), Gaps = 3/231 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGF-NVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 IL+VDD+ + ++K +L EGF V+ A E+ALD++ D++ L+LLDVMMP + G Sbjct: 4 ATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQTG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D +R+ P+ LTA+ S+LD++ G GADDY+ KPFN EL+ARI+A L+R++ Sbjct: 64 FDVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKRTY 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ + S E + + +P E DG+T+ + LL H +V+S++ Sbjct: 124 I-HKEVAAASVSSAYEYERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLSKD 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + ++V G + +HI LR K+ + T+RG GY V Sbjct: 183 QIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVP 233 >UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2J4_9FIRM Length = 257 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 85/255 (33%), Positives = 130/255 (50%), Gaps = 28/255 (10%) Query: 1 MNK--ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKK 57 M+K IL+VDD+ E+ ++ LL EGF V A +G QAL L++ DL++LD+MMP Sbjct: 1 MDKTCILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 NG T + +R+ P++ L+AR E D+ LG G DDYL KPF+ EL++R +A++RR Sbjct: 61 NGYQTCRKIRELSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRR 120 Query: 118 SHWSEQQQNNDNGS------------------------PTLEVDALVLNPGRQEASFDGQ 153 + + + N S L L +N +E +GQ Sbjct: 121 YQVYKGKNESGNQSINSASVNPTAEPIASTSNASDSRHRILLFHDLEINQTVREVHKNGQ 180 Query: 154 TLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKR-LTPFDRAIDMHISNLRRKLPDRK 212 L+LT TE+++L LL + Q S + L + V + + + +HI NLR K+ D Sbjct: 181 LLDLTETEYSMLELLVANRHQTFSAQRLFESVWQEPYYYGANNTVTVHIRNLRSKVEDHP 240 Query: 213 DGHPWFKTLRGRGYL 227 KT+ G+GY Sbjct: 241 GNPELIKTVWGKGYR 255 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 94/239 (39%), Positives = 130/239 (54%), Gaps = 13/239 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL---DDSIDLLLLDVMMPKKN 58 +LL++DD +L L+ E L M + V A + L+ L SIDL++LD+M+P + Sbjct: 9 KTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDMD 68 Query: 59 GIDTLKALRQTHQ-----TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRA 113 G+ + +RQ T +IMLTA+G DRVLGLE+GADDY+ KPF REL+ARIRA Sbjct: 69 GMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIRA 128 Query: 114 ILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLG 173 ++RR QQ DN L L + P E + D + + LT +F LL+ A H G Sbjct: 129 VMRRHDLPLHQQKEDN----LVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSG 184 Query: 174 QVVSREHLSQEVLGKR-LTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 +V+SRE L + DRAID+HIS LR + D T+RG GY + Sbjct: 185 KVLSREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFATD 243 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 8/226 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 IL+V+D+ ++ +L+ LE EG++V + H+G + LD + L+LLDVM+P +G++ Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 62 TLKALRQT-HQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 L+ LR+T QTPVI+LTAR S D+V GL++GA+DY+ KPF EL+ARIRA LR Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR---- 120 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + ++ L D L +N +E + +ELT EF LL + +H QV++RE Sbjct: 121 -QNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQ 179 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 + V G +D++I +R+KL D T+RG GY Sbjct: 180 ILSSVWGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGY 224 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 130/238 (54%), Gaps = 18/238 (7%) Query: 1 MNK-ILLVDDDRELTSLLKELLEMEG-FNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKK 57 M + I++++DD ++ ++ LE EG F+V + GE L +L+ +L+LLD+ +P Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 58 NGIDTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAI 114 NG + + LR T P+IMLTAR E D++ GL LGADDY+ KPF+ REL+ARI A+ Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 115 LRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 LRR+ + S + L ++ GQ + LT EF LL LLAQ G+ Sbjct: 121 LRRTEGTP--------SSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGR 172 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 V++RE+L V G R +D+HI +R+KL + +T G GY V A Sbjct: 173 VLTREYLLDRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRFVEAG 226 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 93/232 (40%), Positives = 134/232 (57%), Gaps = 3/232 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 +IL+VDDD L +LL+ LE +GF V AHD Q LL L++LD M+P ++G+ Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 62 TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LRQ++ TP+IMLTARGS+ DR+ GLE GADDYLPKPFN EL+ARIRA+LRR Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR-QV 140 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 E + + L+ + + +GQ + LT EF +L L QH + ++R+ Sbjct: 141 REVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDK 200 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L G+ +R+ID+ +S LRR + D + +T+ G GY+ V Sbjct: 201 LMNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPDG 252 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 3/229 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGID 61 ++L+V+DD +++ + + LE GF+ + DG + LL +S DL+LLD+M+P K+G D Sbjct: 6 RVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKSGYD 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R+ P++M+TAR +D++ GL LGADDY+ KPF+ ELVAR+ A LR+ Sbjct: 66 ICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQYDRM 125 Query: 122 EQQ--QNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ + + V L + + + ++ EF LL LA + V SRE Sbjct: 126 MRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIVFSRE 185 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L +++ G + +HI+ +R K+ D +T+ G GY Sbjct: 186 QLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRF 234 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 129/232 (55%), Gaps = 12/232 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 +IL+V+D+ + ++ +LE GF + A D + A++ L++ DL+LLD M+P +GI Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 TLKALRQTH---QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 +K L++ PV+MLTARG E DRV GLE GADDY+ KPF+ +ELVARI+A++RR Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + +E+ L L+P + LE+ TEF LL+ H +V SR Sbjct: 124 SPMAVE-------EVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSR 176 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 E L V G + DR +D+HI LR+ L +T+RG GY + Sbjct: 177 EQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFST 227 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 138/230 (60%), Gaps = 8/230 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 K+L++DD++ L L++ E EGF+V VA+DGE+AL + + S D ++LD+M+PK +GI Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +RQ +IMLTA+ ++D++LGLELGADDY+ KPFN REL+AR+R ++RR Sbjct: 78 LCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRR---- 133 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 Q+ + + L+++ G + + + + LT EF +L LL ++ G+V RE + Sbjct: 134 --QEKGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEI 191 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 Q V G+ R ID+H+ NLR KL D K P +T G GY Sbjct: 192 FQLVWGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 143/230 (62%), Gaps = 2/230 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KI+++DDDR++ L+K+ L+ +GF+ G+ +L + DL++LD+M+P +NG+ Sbjct: 3 KKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENGL 62 Query: 61 DTLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K LR + P+IMLTA+G E+DR++GLE+GADDYLPKPFN REL+ARI +I RR Sbjct: 63 DICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHE 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++ N+ T++ D NP + D + ++LT EF+LL + ++ Q +SR+ Sbjct: 123 MELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLSRD 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + Q GK L FDR+ID+ IS +R+ + + + + KT G GY+ Sbjct: 183 QIMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVFE 232 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 125/229 (54%), Gaps = 2/229 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 KILLV+DD ++ ++K LE EGF V +DG A + L + DL+LLD+M+P +G Sbjct: 4 KKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGY 63 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R+T TP+IMLTA+G ++V GL +GADDY+ KPF EL+ARI A+LRR Sbjct: 64 QVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQ 123 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ N G+ LE D L+ + + + + E LL L + QV RE Sbjct: 124 DHEEVNRKEGNR-LEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREE 182 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L + + G DR ID++I LR++L + KT+ G GY Sbjct: 183 LIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFE 231 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 12/230 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNG 59 M +L+V+D++ + ++ E + G A DG AL +L + DL++LDVMMP +G Sbjct: 20 MANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDG 79 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 K R+ P+IMLTA+G E D++ G E GADDY+ KPF+ + L+A+ A+LRRS Sbjct: 80 FSVCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSS 139 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + L V +++ P + DGQ + LT E+ LLY L + GQ+ +R+ Sbjct: 140 PAPL--------DALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARD 191 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L + G R +D HI LR+KL D TL GY Sbjct: 192 QLLNRIWGYDFEGTTRTVDTHIKTLRQKLGDEG---KHIVTLIRSGYKFE 238 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGID 61 +I +V+D+R + L+ LE EGF + +G +A + ++ + DL+LLDVM+P +G+ Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R+ P+IMLTA+ D+V GL++GADDY+ KPF EL+ARIR LR Sbjct: 66 ICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALR---KH 122 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 L+V LV+ P R E DG+T+ LT E++LL + ++ V++R+ + Sbjct: 123 VPDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQI 182 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGY 226 ++V G + +D++I LR KL D + + T+RG GY Sbjct: 183 LEKVWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGY 226 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 131/236 (55%), Gaps = 5/236 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M IL+VDD++ + +++ LE G+ VI A DG AL+L + DL++LD++MP +G Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60 Query: 60 IDTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 + L+ T + P+IML+AR ELD+VLGLE+GADDY+ KPF+ RELVAR+ A LR Sbjct: 61 YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 R E D+ + + L+++ G+ L EF LLY LA G+ Sbjct: 121 RDKKEEFIIPRDSKNIIMR-GKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYF 179 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 SR L ++ ++ R +D+HI +R+KL + +T RG GY + + Sbjct: 180 SRYFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFIETN 235 >UniRef50_P54443 Uncharacterized transcriptional regulatory protein yrkP n=4 Tax=Bacillus RepID=YRKP_BACSU Length = 231 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 135/230 (58%), Gaps = 3/230 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDT 62 +IL+V+DD ++ LL+E L G+ V+ A DG++AL L++DS+DL++LD+MMP +GI+T Sbjct: 4 RILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLVNDSLDLVILDIMMPGISGIET 63 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 + +R++ P++ LTAR S LD+ GL G DDY+ KPF++ EL AR+ A LRR + Sbjct: 64 CQHIRKSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTIYQ 123 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 +++ + L L ++ E + + ++L+ E+ +L LL ++ S +++ Sbjct: 124 EKKEQEE--TFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNIY 181 Query: 183 QEVLGKRLTP-FDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + V G+ + + +HI LR K+ D + KT GRGY ++ Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRFGAS 231 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 134/232 (57%), Gaps = 3/232 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 + IL+V+DDRE SL+ + L G +V A DG + + D +DL+++D+M+P ++G Sbjct: 14 IPSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDG 73 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +R Q P+IMLTARG ++DR++GLE+GADDY+ KPFN REL+ARI A+LRR Sbjct: 74 LSLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRR-Q 132 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEAS-FDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 S + + G+ D ++ +E G + LT EF LL + G+V+SR Sbjct: 133 ASALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSR 192 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 E L + G FDR+ID+ +S +RRK+ KT+R GY+ Sbjct: 193 EVLLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTP 244 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 133/232 (57%), Gaps = 8/232 (3%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M +IL+++D+ + + LK+ LE EG+ VI A DGE+ L ++ + DL+LLDVMMPK +G Sbjct: 1 MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDG 60 Query: 60 IDTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 LR+ P++MLTA+G DRV GL+ GADDYL KPF+ EL+AR+RA+LRR Sbjct: 61 FALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRH 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ TL + ++ +Q A + L T E+ +L LL++ G+ +SR Sbjct: 121 QREKRAVA------TLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISR 174 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 E V G P R +D HI++LR K+ + W KT+ G GY + Sbjct: 175 ERFLDVVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 81/243 (33%), Positives = 138/243 (56%), Gaps = 15/243 (6%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD---DSIDLLLLDVMMPKKNG 59 KIL+V+D++ ++ ++ + E ++ A+DG +A++ DS D++ LD+ +P +G Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 60 IDTLKALRQTHQT-PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + + +R+ + P+IMLTAR SE D+VLGLELGADDY+ KPF+ L+ARI+A+ RR+ Sbjct: 62 MQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 121 Query: 119 HWSEQQ--------QNNDNGSPTLEVDALVLNPGRQEASFDGQTL-ELTGTEFTLLYLLA 169 ++Q + DN ++ D ++ +EA + + +LT EF LL LA Sbjct: 122 ELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLA 181 Query: 170 QHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 ++ QV SRE L + V + +R +D HI LR+K+ + +T+ G GY Sbjct: 182 KNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEVG--PQVIQTVWGVGYKFD 239 Query: 230 SAS 232 ++ Sbjct: 240 DSA 242 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 130/232 (56%), Gaps = 12/232 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNGI 60 ++L++DDD ++T++L+ L EG+ V VA+DG + +++ ++ +LL+LD+M+P +G Sbjct: 3 ARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGW 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + + R+ + TP+++L+AR +V GL LGADDYL KPF EL+AR++A+LRR Sbjct: 63 EICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR--- 119 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + ++ L ++ +E G L LT EF LL H QV++RE Sbjct: 120 ------RITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQ 173 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + V G T ++++I+ LR+K+ D T+RG GY++ Sbjct: 174 IIDRVWGLDFTGGSNVLEVYINMLRQKIEDYGS--RIIHTVRGVGYVLKEQG 223 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 127/231 (54%), Gaps = 2/231 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M IL+++DD ++ +L+++ L+ ++ + GE+ L + D+++LD+ +P +G Sbjct: 1 MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 60 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 I+ + +R+ TP+ ++TAR E+DR++GLELGADDY+ KPF+ REL R+ RR Sbjct: 61 IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + N S + AL ++P R+ + + ++ EF +L L+A G+V SR Sbjct: 121 DKKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSR 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 E + + V G F+R ID H+ +R KL W +T+ G GY Sbjct: 181 EMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFT 231 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 108/231 (46%), Positives = 164/231 (70%), Gaps = 5/231 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNG 59 M K+LL DDD L+ L+KE + EG+ V A +G +AL+L D D+++LDVMMP+ +G Sbjct: 1 MVKLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +TLK +R PVIMLTA+G ++DR+LGLE+GADDYL KPFN REL+ARI+AILRR+ Sbjct: 61 FETLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRA- 119 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q+ D+ + +++ ++L + +G+ +ELT +E+TLL + GQV++++ Sbjct: 120 ---SQEREDDPTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQ 176 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 LS++ LG++LT +DR++DMHISNLR+K+ + ++G P KT+RG GY+ VS Sbjct: 177 ELSEKALGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVS 227 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 92/230 (40%), Positives = 137/230 (59%), Gaps = 2/230 (0%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD--LLDDSIDLLLLDVMMPKKNGID 61 I +VDDD E+ +LLK LE F V+ A GE L + +DL++LD+M+P ++G Sbjct: 7 IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQDGFA 66 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 ++LR Q PVIMLTA E+DR++GLE+GADDYL KPFN REL+ARI+AILRR + Sbjct: 67 VCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRRMEHT 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 E + L+ +E F + L+G ++ LL L H G V++RE + Sbjct: 127 EVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGAVLTRELI 186 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 ++ G+ P DR ID+H+S LR++L + KT+RG+GY++ ++ Sbjct: 187 AENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTAS 236 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 80/229 (34%), Positives = 129/229 (56%), Gaps = 4/229 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 MNKIL++DDD+EL +L+K ++ E + G++ L L + L++LDVMMP +G Sbjct: 18 MNKILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 77 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 +TL+ +R+ + P++M T++ + +V GL GADDYL KPF+ EL+ARI +++RR Sbjct: 78 FETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYT 137 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 QQ L D L ++ + A+ T EL EF LL A+H G++++++ Sbjct: 138 RFNQQAGAIQK---LNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKILTKQ 194 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + +EV G+ D I IS LR+KL + +T++G GY Sbjct: 195 QIYEEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRF 243 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 129/228 (56%), Gaps = 4/228 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 K+L+VDD+ ++ ++K LE EG V A+DG Q L++ + + DL++LD+M+P G Sbjct: 5 KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGE 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R+ + P+IMLTA+ E + GL +GADDY+ KPF+ REL+ARI AI RR Sbjct: 65 EICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRR--- 121 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 ++ + + + LV++ ++E +G+ + LT ++ +L L ++ + +RE Sbjct: 122 LNEEVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTREE 181 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L LG +DR +D H+ N+R+K+ + T+ G GY Sbjct: 182 LISTALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRF 229 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 95/228 (41%), Positives = 136/228 (59%), Gaps = 9/228 (3%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDT 62 IL+V+DD L +L++ LE EG+ V +A DG AL+L + + L++LD+M+P+ +G++ Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 LKALRQTHQT-PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + LR + P+IMLTARG + D+V GL LGADDYL KPFN EL+ARI A+LRR+H S Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + Q+ + V L ++ R + Q L+L+ EF +L L + GQ V RE + Sbjct: 125 KPSQH-------VSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKI 177 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 QEV G +R ID HI+ LR KL D + T+ G GY V Sbjct: 178 YQEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFV 225 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 132/227 (58%), Gaps = 5/227 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGIDT 62 +L+VDD+ + + ++ LE+EG V A +G +A++ + + D++LLDVMMP +G + Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ +R Q PVI+LTA+ E DRV GLELGADDY+ KPF+ REL++RIRA+LRR + Sbjct: 69 LRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQP 128 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 D L ++ R+E DG+ + L TE+ LLY L Q+ G V++ E L Sbjct: 129 PIPQTLVKVD----DRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLL 184 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 +V G + ++I+ LR+K+ + + T RG GY V Sbjct: 185 SKVWGPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFV 231 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 130/234 (55%), Gaps = 6/234 (2%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKN 58 MN KIL+++DD E+ ++++ L E ++V + G++ L+ D+ DL++LD+M+P+ + Sbjct: 1 MNGKILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEID 60 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G K +R P+++L+A+ E+D+V GL+LGADDY+ KPF+ EL AR+ ++R Sbjct: 61 GFTVCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRY 120 Query: 119 HWSEQQQNNDNGSPTLEV-DALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + + + L + + D + +ELT EF+LL +LAQ+ +V + Sbjct: 121 KGYN---KKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFT 177 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 ++ L + V + + I +H+ LR+KL D + +T+ G GY + Sbjct: 178 KKELYENVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFIGE 231 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 73/228 (32%), Positives = 131/228 (57%), Gaps = 7/228 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 + +V+D+ + +LK LE G+ V A +G++ L + + + D ++LD+M+P G + Sbjct: 4 TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEE 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 K +R T P++ML+A+ SE DR+ G+ +GADDY+ KPF+ RE++ R+ AILRR+ Sbjct: 64 ICKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTL 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + ++++ ++E + +T+ LT EF ++ ++A+H G+V SR L Sbjct: 124 NKMEIFSFNKK-----EIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADL 178 Query: 182 SQEVLGKRLT-PFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 Q++ ++R+ID+HI NLR+KL + T+ G GY Sbjct: 179 LQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKF 226 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 132/233 (56%), Gaps = 4/233 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI--DLLLLDVMMPKKNG 59 +IL+VDDD + +LL L +GF+V V G + L DLL+LD+M+P ++G Sbjct: 15 PRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDG 74 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + L + PVIML+ARG ++DR++GLE+GADDY+PKPFN REL+ARIRA+LRR Sbjct: 75 LSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + V ++P ++A L+LT E+ LL + +V++R+ Sbjct: 135 M--EPDARGKQDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVINRD 192 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + + G + FDR+ID+ I+ LRRK+ + T+ G GYL + Sbjct: 193 QIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSG 245 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 90/229 (39%), Positives = 131/229 (57%), Gaps = 6/229 (2%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKN 58 M KILLVDDD L + LL EG+ V+ A DG +AL+ L + DL++LD+MMP+ + Sbjct: 1 MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLS 60 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G + LK +R+ PVI+LTA+ +D+V+GLELGADDY+ KPF+ +EL+ARI+AIL Sbjct: 61 GFEVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL--- 117 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ L + L ++ + DG+ L+LT TEF +L LL + GQ +R Sbjct: 118 -RRLGRREGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTR 176 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 +S+ V R ID+HIS LR K+ +T+ GY Sbjct: 177 AQISEAVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleidia extructa W1219 RepID=D2MMT6_9FIRM Length = 232 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 132/228 (57%), Gaps = 4/228 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M++ILLVDD++++ LK L E F ++ A +G++AL+++ + +DL+L+D+MMP +G Sbjct: 1 MDRILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K +R+ P+I L+A+G D++ GL +GADDY+ KPF+ E++ARI+A LRR Sbjct: 61 VKATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFK 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 QQ + + + LN + + DG+ + LT E+ +L Q+ ++++ + Sbjct: 121 ELGSQQKDQ---EVYMLGGITLNDSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQ 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 + QEV + + I +HI +LR K+ + K + GRGY Sbjct: 178 DIYQEVWKEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYK 225 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 120/233 (51%), Gaps = 11/233 (4%) Query: 6 LVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDTLK 64 +V+D+ + + L EG+ V A DG ++L + + D+++LDVM+P +G++ + Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 65 ALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE-- 122 ++ PV+MLTAR E D+++GL +GADDY+ KPF+ RELVAR+ ++RR + Sbjct: 82 RVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARAL 141 Query: 123 ---QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + L ++ ++ G + LT TEF LL LA+ V++RE Sbjct: 142 VGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTRE 201 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L +EV R +D H+ LRRKL +T+ G GY Sbjct: 202 KLLEEVWDWADASGTRTVDSHVKALRRKLGAD-----LVRTVHGVGYAFEPGG 249 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 13/234 (5%) Query: 1 MNK----ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMP 55 M +L+++DD + L++ +E G+ VA+DGE L+ + D + LD+M+P Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 56 KKNGIDTLKALR-QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAI 114 K +G + + +R + P+IMLT +G D++ GL++GADDY+ KPF+ ELVAR++A+ Sbjct: 61 KIDGWELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAV 120 Query: 115 LRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQ 174 +RR+ + + + LV++ +A+ + + + E LLY LA + Q Sbjct: 121 MRRADLLNDE------DQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQ 174 Query: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 V +R+ L ++ G R ID+HI +R KL + KT+RG GY Sbjct: 175 VFTRQQLLDQIWGYAFEGDPRTIDVHIKRIREKLTEADAKWT-IKTIRGVGYKF 227 >UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT63_9FIRM Length = 233 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 131/232 (56%), Gaps = 8/232 (3%) Query: 1 MN--KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKK 57 M KIL+ +DD+ + + + LE EGF+VI A+DG +A+++ + DL+++D+MMP+ Sbjct: 1 MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRL 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 +G + +K LR P+I+L+A+ + D+V+GL +GADDY+ KPFN EL+AR+ + LRR Sbjct: 61 SGEEAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRR 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 H +N S +++ + LN + S D + + LT E+ +L L ++ +V S Sbjct: 121 YHSY----DNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFS 176 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 E + + V + + + +HI +R K+ + + G GY V Sbjct: 177 IESIYEHVWNEPAI-EAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFV 227 >UniRef50_B4WSE4 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSE4_9SYNE Length = 243 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 129/232 (55%), Gaps = 5/232 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS---IDLLLLDVMMPKKN 58 IL+ +DD + L + LE + VI A DG+ AL + IDL++LDVMMPK + Sbjct: 8 QTILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLD 67 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G + LR T P+IM T GS DRV GLE+GA+DY+ KPF+ +EL+ARIR+ILRR+ Sbjct: 68 GFQVCQRLRATSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSILRRA 127 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ + +E+ V++ + A +G L LT EF L+ LLA G + SR Sbjct: 128 ARRQEHVSGVVHRSAIEIGQFVIDSSTRRAYIEGHNLRLTEIEFRLIELLASRPGHIFSR 187 Query: 179 EHLSQEVLGKRL--TPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + + G + +D+HIS LR KL + + T+RGRGY+ Sbjct: 188 GDILEALWGYDANSAADTKTVDVHISRLRIKLNETTHNPKYIVTIRGRGYMF 239 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 131/231 (56%), Gaps = 13/231 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 +KI++++D+ ++ +LL L+ G++ VA DG++ L L+ + DL+LLD+M+P +G Sbjct: 3 HKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGT 62 Query: 61 DTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 D KA++ + P+IMLTARG E+DR+LG ELGADDY+ KPF+ REL+ RI+ +LRR Sbjct: 63 DVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRR 122 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 N + D L + DG LT TEF L ++ G+V+S Sbjct: 123 ------NVNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLS 176 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 RE L G + R +D H+ LR+KL D W +T+RG GY M Sbjct: 177 REQLLSNAWGYEFEGYSRTVDTHVRRLRKKLGPYAD---WLETVRGIGYRM 224 >UniRef50_Q2S514 Response regulator DrrA n=3 Tax=Rhodothermaceae RepID=Q2S514_SALRD Length = 237 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 85/229 (37%), Positives = 130/229 (56%), Gaps = 14/229 (6%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGIDTL 63 +L+VDD++++ ++ LE EG+ V A DGE+AL+ IDL++LD+M+P +G + Sbjct: 12 VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETASGKIDLIVLDIMLPGVDGYEVC 71 Query: 64 KALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR +T + P++ L+A+ E D++ GL LG DDYL KP + + LVA ++A+LRRS Sbjct: 72 RELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRRSGV 131 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 S LEVD L + A +G+ L LT TEF LL L +H + +R+ Sbjct: 132 --------EESSILEVDGLKIYEDEYRAELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQ 183 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L + + + +R +D HI NLR KL D +T+RG GY V Sbjct: 184 LLETIWKDAMMVTERTVDAHIKNLREKLGDFA---KHIQTVRGVGYRFV 229 >UniRef50_C6PZ92 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ92_9CLOT Length = 235 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 66/228 (28%), Positives = 129/228 (56%), Gaps = 4/228 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD--DSIDLLLLDVMMPKKNGI 60 KIL+V+DD+E+++L+ ++LE EG+ ++ A DG A+D + L++LD+M+P +G Sbjct: 8 KILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMVPFVDGF 67 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + ++ +RQ P+++++A+ +E+D++ + +GADDY+ KPF+ E V RI+A++RR + Sbjct: 68 EIIRRVRQKSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIRRYIY 127 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 +Q + + LV++ Q +++T EF +L L + +V ++ Sbjct: 128 FNSEQ--EMHESAINYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVFTKSQ 185 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + G+ D + +HI LR K+ D + T+ G GY + Sbjct: 186 IYDSIWGQDALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYKL 233 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 137/231 (59%), Gaps = 7/231 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGI 60 K+L+VDD+ ++ L++ LE G+ V +G + L L+ ++ DL++LD+M+P G+ Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGM 69 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 D K +++ + P+IM+TA+ E + VLGLELGADDY+ KPF+ REL+AR+R++LRR+ Sbjct: 70 DLCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKE 129 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 E+++ + + + + LN +A + ++LT E+ +L L + G +R+ Sbjct: 130 GEEEEQFEGN---ITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRDK 186 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L V GK + DRA+D++I LR KL D +T+RG GY A Sbjct: 187 LLDRVWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRFNEA 234 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 85/232 (36%), Positives = 128/232 (55%), Gaps = 10/232 (4%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 + IL+VDDD + L+ LE EGF A DG AL +++ +D+++LD+MMP +G Sbjct: 31 IPNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDG 90 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D LR+ + P++MLTA+G +V G LG DDYL KPF+ ELV R++A+L+R Sbjct: 91 FDVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQ 150 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + Q ++V ++LN E + QT+ L EF LL+ L G+ SRE Sbjct: 151 ITVSQS--------IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSRE 202 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L ++V G +R +D+HI+ LR K + K KT+RG GY + + Sbjct: 203 QLIEDVWGYDFEGNERTLDVHINRLREKFQEEKSKFS-IKTIRGLGYRLEVS 253 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 135/235 (57%), Gaps = 13/235 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 IL+VDD+ + ++ LEM G+ + A + +QA ++D DL+LLD M+P +GI Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + + L++ T P+IMLTA+G E +++ GLE+GADDY+ KPF+ RELVAR++A+LRR Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + + + +EV L+L+P + DG+ E+ TE+ LL H + + Sbjct: 124 TGPGDSEAP-------IEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYT 176 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 R L +V G + +R +D+HI LR+ L + + +T+RG GY + S Sbjct: 177 RGQLLDQVWGGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRFSTKS 229 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 136/232 (58%), Gaps = 2/232 (0%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 N IL+VDDD E+ LL + L GF+V A +G + ++ + ++L++LD+M+P ++G+ Sbjct: 5 NHILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGL 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + +R P+IMLTA+G+ +DR++GLE+GADDYLPKPF+ REL+ARI+ ILRR+ Sbjct: 65 SLCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRN 124 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEAS-FDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + + L+ ++ +G + L +++ +L L +H + +SR+ Sbjct: 125 DRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRPLSRD 184 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L + V GK DR+ID+ IS LR + +T+R GY++ S Sbjct: 185 FLVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLASQ 236 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 88/232 (37%), Positives = 128/232 (55%), Gaps = 2/232 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M +LLVDDD ++ SLL + V +A +G L+ ++IDL++LDVM+ ++G Sbjct: 1 MPHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +R + PVIMLTA DRV+GLE+GADDYL KPF+ REL+AR++A+LRR+ Sbjct: 61 FSLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTA 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASF-DGQTLELTGTEFTLLYLLAQHLGQVVSR 178 E P L L+ R+E D + L+G EF LL A+H +V++R Sbjct: 121 ELEATPTPSETRPMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQRVLTR 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 + L G FDR+ID+ +S LR KL D +T+R GY+ Sbjct: 181 DQLLDLARGLSHAAFDRSIDVQVSRLRHKLEDDPKKPSVIRTVRNGGYIFTP 232 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 134/231 (58%), Gaps = 5/231 (2%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKN 58 M IL+ DD+R++ S+L+ LE G+NV+ A DG+QALD LL +D+ LLD+MMP+ + Sbjct: 1 MPYTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMD 60 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G LK LR+T PVI+++A+G + +++LGL LGADDY+ KPFN E VAR+ +RR Sbjct: 61 GYQVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRL 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 Q + L L L+ + +G+ +ELT E+ ++ + QH G+V ++ Sbjct: 121 KGMAAAQPK-RPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTK 179 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + + + + + ++ + +S LR KL D KT+RG GY + Sbjct: 180 QQIYECGWDEDYVAAENSVMVCMSRLRSKLGDDGQEA--IKTIRGLGYRLE 228 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 127/229 (55%), Gaps = 13/229 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSID--LLLLDVMMPKKNGI 60 K+L+VDD+ + L+K+ L ++V+ A +GEQA+D+ + D L++LDVMMPK +G Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 K +R+ + P+IMLTA+ E D +LG ELG D+Y+ KPF+ + LVAR+ AI+RRS Sbjct: 65 QVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRS-- 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 T+E+ +V++ E D +EL+ EF LL + G +SRE Sbjct: 123 ------IQTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREK 176 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + V R ID H+ LR K+ D+ D + KT+ G GY Sbjct: 177 ILNNVWNYDYFGDARTIDTHVKKLRSKMGDKGD---YIKTIWGMGYKFE 222 >UniRef50_C7N5H9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5H9_SLAHD Length = 234 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 5/234 (2%) Query: 1 MNK-ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKN 58 M K IL+VDDD + + ++ EG +V+ A +G +AL++ +DL++LDVMM N Sbjct: 1 MPKTILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHLDLVILDVMMEGYN 60 Query: 59 GIDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR- 116 G + A+R P+I+L+A+ +D+ LG +LGADDY+ KPF ELV R + LR Sbjct: 61 GFEVCSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLRN 120 Query: 117 RS-HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQV 175 RS +E + G + + L ++ ++ + + L+LT E+ +L L+A+ V Sbjct: 121 RSPQEAEAEPQAGGGGSVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVV 180 Query: 176 VSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 +R+ + V G + + I LR K+ T G GY +V Sbjct: 181 FTRQQILDSVWGYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGYRIV 234 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 135/230 (58%), Gaps = 8/230 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 KIL++DDD+ ++++++ L EG+ V VA+ G++ L+L L+D DL++LD+MMP +G+ Sbjct: 3 TKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGL 62 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + K LR+ P++M+T S DRV GLE GADDYL KPF ELVAR++A+LRR Sbjct: 63 EVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 +++ L LV++ ++A +T+E + TEF LL +H QV++RE Sbjct: 123 KKKE------DEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTREL 176 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 L V G +++++ LR KL + + T+RG GY++ Sbjct: 177 LMDRVWGFDFRGESNVLEVYVGYLRSKLEAQ-NEPRLIHTVRGAGYVLRE 225 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 109/229 (47%), Positives = 146/229 (63%), Gaps = 5/229 (2%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 ILL+DDDREL L+ L EGF+V HDG L L +L ++D+MMP KNG+D Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 L+ LRQ+ PVIMLTARG E+DR+LGLELGADDY+PKP N REL ARIRA+LRRS + Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDTQQ 122 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 + + +L +P + + G+ ++LT TE+ +L +L QH G+VVS+ LS Sbjct: 123 ESDDKQET----RFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSKYELS 178 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 Q LGKR PFDR +D+HI +LR+K+ + KT+R G+L V Sbjct: 179 QAALGKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFVPE 227 >UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostridium RepID=A7GIT8_CLOBL Length = 230 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 129/231 (55%), Gaps = 5/231 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 KIL+VDDD+ + L+ L EG+ V +++GE+AL+ ++ + DL+L+D+MMPK +G + Sbjct: 4 KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKIDGFE 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +K +R+ P+I LTA+ ++ D++ G G DDY+ KPF+ EL R+ AIL+R Sbjct: 64 AIKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVSTG 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 ++N D ++V L LN + LT EF +L LLA++ G+V L Sbjct: 124 VVEENED----LIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSEL 179 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + V G+ D ++ HI NLR KL D + KT+ G GY + + Sbjct: 180 YERVWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 1/230 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M+ IL+V+D+ ++ SLL + L G+ + H+G + + + DL+LLD+M+P K+G Sbjct: 1 MSHILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +++ +IM+TAR E+DR+LGLELGADDY+ KPF+ RE+VAR++ ILRR + Sbjct: 61 LTICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRIN 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 N N + + + LN +A+ + +ELT EF LL +LA G++ SR Sbjct: 121 PPLTTGINTNIAKQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRIYSRS 180 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L V +R ID HI LR+KL + + +++ GY +V Sbjct: 181 QLIDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKLV 230 >UniRef50_C4L1R5 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L1R5_EXISA Length = 230 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 3/226 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDT 62 I + DDD + LL L+ EG+ + A +G++ LDL ++IDLL+LD+MMP GI+ Sbjct: 7 ICIADDDEAIRELLAIYLKNEGYALRFAKNGQEVLDLASTETIDLLILDLMMPVMGGIEA 66 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 +R+T P++MLTA+ S+LD + G+ +GADDY+ KPFN E+ R++++LRR Sbjct: 67 CIEIRKTQFMPILMLTAKTSDLDLMQGISVGADDYIKKPFNPLEVTLRVKSLLRRYRDYG 126 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 + + + TL + + L+ ++ D + LT EF +L +H QV++ E + Sbjct: 127 S--DRADLTSTLVFENVTLDLQTRQCRKDEMLIRLTPKEFDILAYFMRHPNQVLTVEQIY 184 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + V G+ D + +HI+ +R KL D KT+ G GY + Sbjct: 185 EAVWGEAAFEVDNTVMVHITKIREKLEDTPRKPTIIKTVWGVGYRL 230 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 128/231 (55%), Gaps = 11/231 (4%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 +++++D+ + L+ L EG V VA +G AL ++++ DL++LD+M+P +G+ Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 62 TLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR + P+I+LTARG +RV GL+LGADDY+ KPF+ EL+AR+ AI RR+ Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 S L+V L LN +E + G+ +ELT TEF LL +H +V +R+ Sbjct: 138 SRP-------VTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQT 190 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L V G +++HISNLR K+ D +T+ G GY + Sbjct: 191 LLSRVWGFTYVGDSNIVEVHISNLREKIGDH--ERKLIRTVYGVGYTLRPD 239 >UniRef50_C8P1C0 Regulatory protein VanR n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1C0_ERYRH Length = 231 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 80/230 (34%), Positives = 137/230 (59%), Gaps = 2/230 (0%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVMMPKKNGI 60 M KIL+VDDD+E+ L+K LE++G+ V+VA DG A+ LD+SI L++LDVMMP+ G Sbjct: 1 MKKILIVDDDKEIRDLMKRYLEIDGYEVVVASDGHDAMRALDESIKLVILDVMMPEITGF 60 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS-H 119 + +A+R+ + P++ ++A+ +E D+ +G +G DDYL KPF+ EL R++++LRR Sbjct: 61 EVSEAIRKHYNVPILFVSAKATEQDKFVGFSVGGDDYLSKPFSFSELSLRVKSLLRRYIQ 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + +N + +D++ ++ + DG L+LT EF +L LLA + G++ S + Sbjct: 121 YDRATENALEQNKVNTIDSITIDLEKGITLKDGLPLDLTEREFRILKLLATNRGKIFSIQ 180 Query: 180 HLSQEVLGKRL-TPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + V + +HI NLR+K+ + + K + GRGY + Sbjct: 181 SIYENVWQDEYLYSSANTVMVHIRNLRKKIENCPENPKIIKNIWGRGYKI 230 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 93/237 (39%), Positives = 135/237 (56%), Gaps = 5/237 (2%) Query: 1 MNK---ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPK 56 M+ IL+VDDD E+T LL E L F V A D + L +++L++LDVM+P Sbjct: 29 MHTKISILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPG 88 Query: 57 KNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +G+ + +R+ Q PVIMLTAR + DR++GLE GADDY+ KPF RELVARI +LR Sbjct: 89 TDGLTLSREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLR 148 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQE-ASFDGQTLELTGTEFTLLYLLAQHLGQV 175 RS +++ N S + D L+ + S G + L+ EF LL Q ++ Sbjct: 149 RSQGAKEVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRRL 208 Query: 176 VSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 SR+ L ++ G+ + F+R+ID+ +S LR+KL D D KT+RG GY+ S Sbjct: 209 FSRDQLMEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMFNVQS 265 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 125/230 (54%), Gaps = 6/230 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPK-KNG 59 IL+VDD+ L L+K L G+ V A DG+ A+++L+ S DLL+LD+M+P NG Sbjct: 4 KTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGPLNG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + K +R+ P+IMLT R E DR+ G + GADDY+ KPF+ EL+ R++AILRRSH Sbjct: 64 FEVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILRRSH 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 P + LV+N ++ G+ + LT TE+ +LY L + G+V++ E Sbjct: 124 ----PSEEFPKGPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVITHE 179 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L V G + +IS+LR+K+ D + G GY + Sbjct: 180 DLLTRVWGAEYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYLA 229 >UniRef50_A6LQJ3 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridium RepID=A6LQJ3_CLOB8 Length = 231 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 76/228 (33%), Positives = 127/228 (55%), Gaps = 6/228 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGID 61 IL+V+D+R++ +L+ + E + V A DG +AL++ + + IDL+LLD+MMP +GI Sbjct: 2 NILIVEDERDIRNLISLHMRKENYEVYEASDGREALNIFENEKIDLILLDIMMPNVDGIS 61 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 ++ +R P+I +TA G++ D+VL L LGADDYL KP + EL AR+ + LRR + Sbjct: 62 VIQKVRAISTIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCYKY 121 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 ++ L L E + ++L EF +L LL +LG+V +++ + Sbjct: 122 A-----EHKDIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQI 176 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 +EV + I +H+S++R K+ D + KT+RG GY + Sbjct: 177 YEEVWEEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYKIE 224 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 136/229 (59%), Gaps = 3/229 (1%) Query: 4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGIDT 62 ILLV+DD+ + ++ + L E ++V A DG A+++ + S D++LLD+M+PK +G + Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 63 LKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSE 122 LK +R PVI+ TA+ S+ D++LGL LGADDY+ KPF+ EL+ARI+A +RR+ Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 123 QQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLS 182 +N+ + ++ L++N + S G L LT TEF ++ LLA + G+ S+E L Sbjct: 123 SSRNSQDM--VIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLY 180 Query: 183 QEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + + + ++ HI+ LR KL D + + + KTL G GY M Sbjct: 181 NAIWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKMEEE 229 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 131/231 (56%), Gaps = 12/231 (5%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 IL+VDD+ + +L+ LEM + V+ A D +QA L+ D DL+LLD M+P +GI Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 61 DTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + + L++ T + P+IMLTA+G E ++V GLE+GADDY+ KPF+ RELVAR++A+LRR Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + + ++V+ L L+P + +++ TE+ LL H +V + Sbjct: 124 TDSMGISEP-------IQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYT 176 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 R L V G + +R +D+HI LR+ L + +T+RG GY Sbjct: 177 RNQLLDHVWGGNVYVEERTVDVHIRRLRKALSLEGHD-RFIQTVRGAGYRF 226 >UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacillales RepID=C3ALG3_BACMY Length = 238 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 136/228 (59%), Gaps = 2/228 (0%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 IL+VDD+ E+ +L+ LEMEGF+++ A DG+ AL+ + IDL ++D+MMP NG + Sbjct: 4 TILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGYE 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +K +R+ ++ P+I+L+A+ E+D+++GL LGADD++ KPF+ E++ARI+A LRR++ Sbjct: 64 LIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYDF 123 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 N GS T +D LVL+ G ++L+ E+ LL L G++ +++ + Sbjct: 124 NTDLLNQEGSQT-CIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQI 182 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + V D I + IS LR K+ D + KT+RG GY Sbjct: 183 FENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRFA 230 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 94/234 (40%), Positives = 129/234 (55%), Gaps = 13/234 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M KILL++DD +L SLLK LE EGF++ H G+ A++L DL+LLD+M+P +G Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDG 65 Query: 60 IDTLKALRQTHQ---TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 +D K +R+ PVI LTAR SE DR++GLELGA+DY+ KPF REL+ARI+ R Sbjct: 66 LDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR 125 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 N + LE + L+ + +G L LT TEF LL L G V Sbjct: 126 ---------NQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVF 176 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 SRE L V G+ DRA+D+++ LR+K+ ++RG GY Sbjct: 177 SREQLLNAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEP 230 >UniRef50_A9AVR8 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A9AVR8_HERA2 Length = 248 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 121/231 (52%), Gaps = 5/231 (2%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 KIL+ DDD + L++ L + + ++ +G +AL + D LLL+DVMMP +G Sbjct: 20 KILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVMMPYIDGFT 79 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R P+I++TAR D V G ELGADDY+ KPF EL AR+ AI+RR Sbjct: 80 VTERIRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVEGY 139 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + ++ SP + + L ++ R + G+ + LT EF LLY LA + GQV RE L Sbjct: 140 QHRK----ASPIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDREVL 195 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 +EV G +D+ + LR K+ ++ T+RG GY + Sbjct: 196 FREVWGYEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKLADGG 246 >UniRef50_A6M2A3 Two component transcriptional regulator, winged helix family n=13 Tax=Clostridium RepID=A6M2A3_CLOB8 Length = 242 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 17/241 (7%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 KIL+V+D+ + LK L E F V A++GE AL + ++ L+LLD+M+P +G Sbjct: 4 KKILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPDISGF 63 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + K + Q ++MLTAR +D++LG+E+GADDY+ KPF RE+ ARI AI RR Sbjct: 64 ELCKIMSQKS--YIVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIFRRVSK 121 Query: 121 SEQQQNNDNGSPTLEVDAL-------------VLNPGRQEASFDGQTLELTGTEFTLLYL 167 + ++N + T+ + L +N + DG+ + L EF LL Sbjct: 122 NIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVIKDGKEIMLKRKEFDLLSY 181 Query: 168 LAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYL 227 L ++ G V +R+ L EV G R +D+HI LR L D K+ +T+ G GY+ Sbjct: 182 LYKNKGIVFNRQQLLNEVWGYDYYGDTRTVDVHIRRLRANLGDDKEN-SIVETVFGVGYV 240 Query: 228 M 228 + Sbjct: 241 I 241 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 6/229 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGI 60 ++L+VDD+ + L++ L GF+V+ A G++AL D DLL+LDVM+P +G Sbjct: 21 PRVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGF 80 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + LR + V+ LTAR + D++ GL G DDY+ KPF EL+AR+RA+LRR+ Sbjct: 81 EVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTR 140 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + G L + L+P Q +EL+ TEF+LL + +V+SR Sbjct: 141 RPAPEPSPAPG--LLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRA 198 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + V + +D ++S LRRKL P T RG GY + Sbjct: 199 QILAAVWDRDFDGEPTVVDQYVSYLRRKLGQHG--PPLIHTQRGFGYAL 245 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 132/231 (57%), Gaps = 4/231 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 ++L+++D+ L+ LL L EG+ VIV G+ + L DL+LLD+M+P NG Sbjct: 3 QRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGF 62 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + LR +TPVI+LTA+ +E + V GL+ GADDY+ KPF EL+AR+ A+LRRS Sbjct: 63 EIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRST 122 Query: 120 WSEQQQNNDNGSP-TLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 E+++ + + AL + P + E + +G+ + L EF +L LA+ G V++R Sbjct: 123 GKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTR 182 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + L V G R +D+H+S+LR+KL ++RG GY +V Sbjct: 183 DDLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDP-QSVHIDSIRGVGYKLV 232 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 88/233 (37%), Positives = 136/233 (58%), Gaps = 4/233 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKKNG 59 ++ I +VDDD E+ SLL + L GF+ A + + L++ L+++D+M+P NG Sbjct: 4 IHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ++ + LR PVI LTA G DR++GLELGADDYL KPF REL+ARIR +LRR+ Sbjct: 64 LELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRRTE 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNP-GRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 ++ + L+ +L+ R + DG + L+GTE+ LL + Q+ +V+SR Sbjct: 124 GGARRDQPETTP--LQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRVLSR 181 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + L + G+ P+DR+ID+ IS LR +L D KT+RG GY++ + Sbjct: 182 DELLERTQGRNAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLATD 234 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 138/231 (59%), Gaps = 9/231 (3%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGID 61 IL+ DD++++ L + +E EG+ + A +G++ LD+++ +DL+LLDVMMP+ +G++ Sbjct: 7 TILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGME 66 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 L+ LR + + PVIM+TA+ E DRV GL GADDY+ KPF+ +EL+ARI A +RR++ Sbjct: 67 ALRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRNYGY 126 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 ++ + L+ ++ +N ++ DG+ + LT EF LL +H QV +RE L Sbjct: 127 NDDESKEE----LQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQL 182 Query: 182 SQEVLGKRL-TPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 V G T R +D H+ +R K+ G +F+T+ G GY++ Sbjct: 183 LDHVWGVNYTTGGHRTVDTHMKTMRFKMG---SGGDYFRTVYGVGYVLEDG 230 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 129/230 (56%), Gaps = 5/230 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNGI 60 +K+L+++D+ L LL L EG++ V G L L + DL++LD+M+P NG Sbjct: 3 HKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGF 62 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + L LRQ +TP+I+LTAR +E + V GL+ GADDY+ KPF EL+AR+ A+LRR+ Sbjct: 63 EILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQ 122 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + + V L + P + E +G+T+ L EF +L L Q G V++R+ Sbjct: 123 Q-DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRD 181 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L V G R +D+H+S+LR+KL +++RG GY +V Sbjct: 182 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLEL--GQSVQIESIRGVGYKLV 229 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 91/233 (39%), Positives = 137/233 (58%), Gaps = 13/233 (5%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALD-LLDDSIDLLLLDVMMPKKNG 59 M ++LV+D+ EL L+++ LE GF V + HDG++A + L +L++LD+M+P+ +G Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +R+ P+IM+TAR E+DRVLGL +GADDY+ KPF+ +ELVAR++A+LRR Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLD 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + ND ++ +Q + ++L LT TEF LL L +HLGQV SR Sbjct: 121 RKAEPEQNDL---------FRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRA 171 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLP---DRKDGHPWFKTLRGRGYLMV 229 L + DR ID HI NLRRK+ D + H W + + G GY Sbjct: 172 QLLDHINPDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRFE 224 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 100/231 (43%), Positives = 135/231 (58%), Gaps = 3/231 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNG 59 M IL+VDDDRE+ LL LE + F V D +A L+ L++LD+M+P ++G Sbjct: 27 MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESG 86 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 ID + LR Q P+IMLTA G E DR++GLELGADDY+ KPFN RELVARIRA+LRR Sbjct: 87 IDFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRV- 145 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEAS-FDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + ++ + VL R+ G + LTG E+ LL L +V++R Sbjct: 146 GENETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTR 205 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + L + G++ PFDRAID+ IS LRRKL D KT+RG GY++ Sbjct: 206 DMLLDLLRGRQAGPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVLA 256 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 136/229 (59%), Gaps = 7/229 (3%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGI 60 +ILL +DD L L + L+ EG+ V DG+ AL + + S DL+LLDVM+P+++G Sbjct: 3 PRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGF 62 Query: 61 DTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D K LR++ P++MLTARG +D+V+GL+ GADDYL KPF EL+ARI A+LRR+ Sbjct: 63 DVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRA- 121 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + T ++ + ++ R E + G+ + L+ E+ LL L H G+ V+RE Sbjct: 122 ----PVRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTRE 177 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 L +V G T R +D+H++ LR+KL + + +T+RG GY + Sbjct: 178 DLLTQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >UniRef50_D1BL25 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BL25_VEIPT Length = 229 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 63/228 (27%), Positives = 126/228 (55%), Gaps = 3/228 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGID 61 IL+++DD ++ ++ ++ L + G++V + +G ++ L+ +DL++LDVM+P+ +G + Sbjct: 4 HILIIEDDLDIANIERDYLMVAGYDVTIMTNGTDGIEAALNTPVDLIILDVMLPEMDGFE 63 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 + +R + P++M+TAR ++D++ GL +GADDY+ KPF+ L+A+I+A+L + + Sbjct: 64 VCRQIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAML--AQYK 121 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + + + ++ + L+P + + + + L EF LL L ++ V S+E L Sbjct: 122 RLTERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEEL 181 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 V G + +HI+ LR ++ D T+ G GY V Sbjct: 182 YSRVWGLDSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGYKFV 229 >UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=9 Tax=Gammaproteobacteria RepID=Q4ZQ24_PSEU2 Length = 247 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 132/231 (57%), Gaps = 4/231 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGE-QALDLLDDSIDLLLLDVMMPKKNGID 61 +L+V+DD+ L L + L+ G V + DG A ++ + DL++LD+M+P ++G Sbjct: 9 HVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGEDGFS 68 Query: 62 TLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWS 121 +++R + P++MLTAR + D + GL+ GADD++ KP + R L+ARI+A+LRRS Sbjct: 69 ICRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRSEAP 128 Query: 122 EQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHL 181 + L LV++ +EA Q++ELTG EF LL+LL + G+ +SRE + Sbjct: 129 QVPAAEL---RRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEI 185 Query: 182 SQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 + G DR+ID+ IS +R K+ D KT+R +GYL V + Sbjct: 186 FTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEA 236 >UniRef50_Q5WBT6 Two-component response regulator n=3 Tax=Bacillaceae RepID=Q5WBT6_BACSK Length = 238 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 6/233 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGF-NVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNG 59 KIL+VDD+ + LL+ LE E F ++ A G++AL L + +L+LLD+M+P +G Sbjct: 4 AKILIVDDEIGIVKLLEITLEKENFIHIDKATTGKEALQLTKEKTFNLILLDIMLPDISG 63 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + +R+ TP+I +++R ++ D++ GL +G DDY+ KPFN E++ARI+AILRR Sbjct: 64 FELCTEIRRNTDTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQK 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 E+ + P + P QT+E T E LL+ ++ ++ + Sbjct: 124 MYERSEKK----PVYDYGYFAFYPESAILMVQNQTVECTAKELELLHFFCENPNRIFTTA 179 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L + V G + ++ + +HIS LR+KL D LRG GY + + Sbjct: 180 QLYERVWGNDVFGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKFIPPN 232 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 84/231 (36%), Positives = 129/231 (55%), Gaps = 15/231 (6%) Query: 1 MN--KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKK 57 M IL+V+DD+E+ L+K+ L + + V+VA DG + + S DL+LLDVMMP Sbjct: 1 MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 NG + K +R P+IMLTA E D++ G +LG DDY+ KPF+ L+ R+ A+LRR Sbjct: 61 NGFEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 S+ + N + L + ++ + + LT EF +L LL Q+ +V++ Sbjct: 121 SY-------DKNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLT 173 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 RE++ ++V G R ID HI NLR+KL P+ KT++G GY + Sbjct: 174 RENIVEKVWGYDYFGETRIIDTHIKNLRKKL-----AIPYIKTIKGIGYKI 219 >UniRef50_C4IAX3 DNA-binding response regulator n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IAX3_CLOBU Length = 234 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 131/231 (56%), Gaps = 2/231 (0%) Query: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKN 58 M KIL+ +DD ++ +LK L+ GF V+ +G AL + ++ IDL LLD++MP N Sbjct: 1 MKYKILVAEDDNDIVKILKLYLDNSGFEVVYVDNGMDALKKIQEEHIDLALLDLIMPIMN 60 Query: 59 GIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 G + K +R+ P+++ +A+ D++L L +GADDYL KPF E++ARI + LRR Sbjct: 61 GYELTKNIREISNIPILIFSAKYEISDKILALSIGADDYLTKPFEPMEVIARINSNLRRC 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + + + N + + L+V L L+ +G + +T TE+ +L L ++ G+V S+ Sbjct: 121 YELDDRFKNQDKNFKLQVGELNLDLDNFTIEKNGLPINVTATEYKILAKLMKYPGRVYSK 180 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 L + + G+ D + +HISNLR K+ + + KT+RG GY + Sbjct: 181 AQLYESINGEYCDSDDSTMMVHISNLREKIEEDPKNPKYIKTVRGIGYKIE 231 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 92/232 (39%), Positives = 136/232 (58%), Gaps = 4/232 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 ILLV+DDRE++ L+ L V VA D + LL D +DL++LD+M+P ++G+ Sbjct: 18 PHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGEDGL 77 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + LR P++MLTA+ E+DR++GLELGADDYL KPFN REL+ARIRA+LRR Sbjct: 78 SICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR--G 135 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEAS-FDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 S +++G L VL+ G ++ DG + LT EF LL+ + G+V+SR+ Sbjct: 136 SGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLSRD 195 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 L G+ PF+R+ID+ +S +R+K+ KT+R GY+ Sbjct: 196 QLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPE 247 >UniRef50_UPI000196AEE3 hypothetical protein CATMIT_00609 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196AEE3 Length = 238 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 75/229 (32%), Positives = 130/229 (56%), Gaps = 3/229 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGI 60 +IL++DD++E+ L++ L EG++V ++ L L+ IDL++LD+MMP +GI Sbjct: 11 PRILVIDDEKEICDLIEIYLSQEGYHVEKRYNAYTLLRDLEKFKIDLVILDMMMPGVDGI 70 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 L+ +R+ + PVI ++A+ ++ D++ GL GADDY+ KPFN ELVAR+++ LRR Sbjct: 71 QALEMIREKYNIPVIFVSAKTADQDKIEGLLKGADDYIAKPFNAMELVARVKSQLRRYQV 130 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + DN ++ + L+++ ++ S D + + +T E+ +L LLA H G V S E Sbjct: 131 YSKPIGVDNS--IIQANDLLIDTNKKMVSVDNRPVAVTKIEYEILVLLASHPGTVFSTED 188 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + ++ + T + I +HI LR K+ + T+ G GY Sbjct: 189 IYTKIWHEEATHANNTIMVHIRKLREKIERQPRTPRHIITVWGIGYKFE 237 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 4/234 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNG 59 M KILL+DD+ + L+ + G+ A DG + L + + ++ DL+++DVMMP+ +G Sbjct: 1 MKKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDG 60 Query: 60 IDTLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 T + +R+ PVI L+A+G +D+ +G + G DDY+ KPF+ REL+ I A LRR+ Sbjct: 61 FTTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRRA 120 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + L VL+ G+ + DG+ L LT EF + + LA G V+S+ Sbjct: 121 SMAAAPVAP--RGDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSK 178 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 E L + GK +I + I LR K+ D +T+ G GY Sbjct: 179 EQLVEAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRFEPEG 232 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 90/232 (38%), Positives = 129/232 (55%), Gaps = 14/232 (6%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI--DLLLLDVMMPKKNG 59 ILLV+D+ +L + ++ L+ EG+ VAHDG AL+ L D +LLD+M+P +G Sbjct: 11 KTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISG 70 Query: 60 IDTLKALRQ---THQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 + K LR+ T PVIM+TA+G+E+DRV+G E+GADDY+ KPF+ REL+ RIRA+LR Sbjct: 71 TEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLR 130 Query: 117 RSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 R+ + + D L ++ D Q + LT EF LLY G+V Sbjct: 131 RTER------PADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQ 184 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 +R+ L +V G R +D H+ LR KL D + +TLRG GY Sbjct: 185 TRDALLSDVWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRF 233 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 94/233 (40%), Positives = 134/233 (57%), Gaps = 5/233 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 +IL V+D+ + L+ LE EG+NV A+ G QAL L + D ++LDV +P +NG Sbjct: 5 KQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQNGF 64 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 + K LRQ +QTP++ LTAR E+DRV+GLE+GADDY KPF+ RE+VARI+AI RR Sbjct: 65 EVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEI 124 Query: 121 SEQQQNNDNGSPTLEV----DALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 Q ++ +E+ NP + + GQ L+LT E+ LL+LL QH +V Sbjct: 125 QAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPEKVF 184 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 SR+ L + +R +D HI +LR+KL +T RG GY +V Sbjct: 185 SRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSLV 237 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 105/232 (45%), Positives = 152/232 (65%), Gaps = 4/232 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 + ILL+DDD++L LL E L+ EG+ + AH GE ++ + DL+LLDVMMP +G Sbjct: 4 HSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGIDGF 63 Query: 61 DTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 +TLK +R++ PV+MLTA+G E DR+LGLELGADDYL KP++ REL+ARI+A+LRR Sbjct: 64 ETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIEL 123 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + Q+ +DNG L + + LN DG+ + +T +EF +L +L G+ V +E Sbjct: 124 DKNQKEDDNG--ILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPKED 181 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L EVLG+ + +DR+IDMH+SN+RRKL + +T+RG GY+ V S Sbjct: 182 LYLEVLGREIMAYDRSIDMHVSNVRRKLGGTTEQSK-IQTIRGIGYMFVDPS 232 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 79/229 (34%), Positives = 125/229 (54%), Gaps = 11/229 (4%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGI 60 IL+++D+ +L ++ L EG+ V VA DG L D + DL+LLD M+P +G+ Sbjct: 9 AHILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGL 68 Query: 61 DTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + LR T PV+++TAR DR GL+ GADDY+ KPF+ +EL++RIR LR Sbjct: 69 EICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLR--- 125 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 Q + L L+L+P +E + + +ELT E+ LL L +H QV++R+ Sbjct: 126 -----QPRRSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQ 180 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + V G T I+++I LR K+ +T+RG GY++ Sbjct: 181 QILEHVWGCDFTGDSNIIEVYIRYLRLKIE-GPGEKRLIQTVRGVGYVL 228 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 133/233 (57%), Gaps = 4/233 (1%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 IL+VDDDRE+ LL LE G +A +G Q +L+ S+DL++LD+M+P ++G+ Sbjct: 6 HILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLT 65 Query: 62 TLKALR--QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + LR + PV+MLTAR E DR++GLE+GADDYL KPF REL ARIR++LRR+ Sbjct: 66 LCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRAR 125 Query: 120 WSEQQQNNDNGSPTLEVDALVLN-PGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 + L L+ R G + L+G E+ LL + H +V++R Sbjct: 126 MLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVLTR 185 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 + L G+ PFDR+ID+ IS LR++L D + KTLR GY+ +A Sbjct: 186 DQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSAA 238 >UniRef50_A6TSQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A6TSQ9_ALKMQ Length = 236 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 89/232 (38%), Positives = 141/232 (60%), Gaps = 5/232 (2%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDL-LDDSIDLLLLDVMMPKKNGI 60 K+L+VDD++ + L++ L GF +I ++G A+++ L + DL+LLD+M+P +G+ Sbjct: 4 TKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDIDGL 63 Query: 61 DTLKALR---QTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 + + +R + HQTP+IMLTA+ E D+V+GL LGADDY+ KPF REL AR+R +LRR Sbjct: 64 EVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLRR 123 Query: 118 S-HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVV 176 + ++V + ++ R + +E T +EF +L LA+ L V+ Sbjct: 124 VMDSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESLEHVL 183 Query: 177 SREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 SR L +EV G++ TP R +D+HI N+R+KL D D + +T+RG GY M Sbjct: 184 SRSLLLEEVTGEKSTPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYKM 235 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 123/233 (52%), Gaps = 3/233 (1%) Query: 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPKKNGI 60 ++IL+ +DD + L ++LE EG+ V+ A DG +AL + ++S DL LLD+MMP NG Sbjct: 4 SRILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCNGY 63 Query: 61 DTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 D + LR+ +IMLTA+G E+D+V+GLELGADDY+ KPF EL ARI A+LRRS Sbjct: 64 DVCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRRSR 123 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 + + S TL + ++ + LT E LL +H + + R Sbjct: 124 RTAPGAAGELPS-TLAIGPATIDRKTYRGCLGTRNFRLTAREMKLLEAFYRHPDEALPRN 182 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L G R +D HI+ LR+K+ T+ G GY V+ S Sbjct: 183 TLLNLAWGIDYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYRYVAGS 235 >UniRef50_B1YJZ1 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YJZ1_EXIS2 Length = 220 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 135/233 (57%), Gaps = 14/233 (6%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNG 59 M IL+ +D+ ++ LL ELLE G++V A +G +AL L + DL++LD+MMP +G Sbjct: 1 MTHILIAEDEFDIRELLTELLESSGYHVTSAANGMEALKLHQSATFDLMILDIMMPYLDG 60 Query: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119 + + +R+T QTP+I LTA E ++V G +LG DDY+ KPF+ R L+ RI A++RR Sbjct: 61 FEVAQQVRKTSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIRRIR 120 Query: 120 WSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSRE 179 ++++Q L + L P G + LT EF +L+LL ++ G+V+ RE Sbjct: 121 TNDEEQ--------LSFREITLFPASYNVLISGNAVILTLKEFQILHLLLENPGRVLERE 172 Query: 180 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS 232 L Q++ G R +D HI NLR+K+ P+ +T++G GY + + + Sbjct: 173 QLIQQLWGFDAFGDTRFLDTHIKNLRKKI-----NVPYIQTVKGVGYKLEATN 220 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 138/230 (60%), Gaps = 6/230 (2%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNG 59 M I LV+DD L+ L+ L+ F+V V G+ L + DL++LD+M+P +G Sbjct: 47 MPNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDG 106 Query: 60 IDTLKALRQTHQT-PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 + + LRQ QT P++MLTAR D+VLGLE+GADDY+ KP R L+AR+R +LRRS Sbjct: 107 LQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS 166 Query: 119 HWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSR 178 +E + +ND + + L ++ + S+ G+ +EL+ E+ LL +LA++ G+V++R Sbjct: 167 SVNEPRLDND----LILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNR 222 Query: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228 + + Q++ G DR++D+ IS LRRK D KT+ G+GYL Sbjct: 223 DRILQQLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 272 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 14/233 (6%) Query: 1 MN--KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI-DLLLLDVMMPKK 57 M I +VDDD + +++ L+ EG+ E+A+ L ++ DL +LD+M+P Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60 Query: 58 NGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 NG + + +R +TP+IM++AR E+D++LGLELG+DDYL KPF+ RELVAR+ L+R Sbjct: 61 NGYEFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQR 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 + + ALVL+ ++ G+ +E+T EF +L LL++H + S Sbjct: 121 WKQMKSHAEQTA------ISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFS 174 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVS 230 R+ L + G DR +D I +R+KL +T+ G GY + + Sbjct: 175 RDELLSLIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRLRT 222 >UniRef50_A4J7U5 Two component transcriptional regulator, winged helix family n=89 Tax=Firmicutes RepID=A4J7U5_DESRM Length = 239 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 128/234 (54%), Gaps = 4/234 (1%) Query: 1 MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD--SIDLLLLDVMMPKKN 58 M KIL+++D+ + S ++ L+ GF + A GE+AL+ ++ I + LLDVM+P + Sbjct: 1 MQKILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGID 60 Query: 59 GIDTLKALRQTHQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 G + + L++ + +IMLTA+G E D+V GL LGADDY+ KPF+ +EL+ARI A++RR Sbjct: 61 GFEVCRILKERYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALIRR 120 Query: 118 SHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVS 177 Q + + L + +++ + ++LT EF ++ L ++ + +S Sbjct: 121 LQPFNTQLGGEAENR-LCSGIYCICLDKKKFYKGEKEIDLTPKEFEIIKLFLHNVDKAIS 179 Query: 178 REHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMVSA 231 R+ + ++ G+ + +D++I +R+K+ + + + G GY Sbjct: 180 RDDILNQIWGRHYIGDLKIVDVNIRRIRQKIENDPSNPATLEKVWGYGYRWRGG 233 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 135/229 (58%), Gaps = 13/229 (5%) Query: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD-SIDLLLLDVMMPKKNGID 61 KIL+VDDD ++ +++K E E FNV A+ + L++ DL++LD+M+P +G+D Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 62 TLKAL-RQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120 +K L R+ + PVI LTAR S+LD +LGLELGADDY+ KPFN R L+ARI+A+ RR Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180 + +N +++ + ++ DG+ EL EF LL L+ ++ G+V +R+ Sbjct: 122 GPKDRN------VVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQE 175 Query: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229 + V G R +D+HIS LR K+ + KT+RG GY +V Sbjct: 176 ILDRVWGMDFFGDFRTVDVHISKLREKIG-----SEFIKTVRGVGYKLV 219 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.215 0.849 Lambda K H 0.267 0.0661 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,462,267,229 Number of Sequences: 3077464 Number of extensions: 179084023 Number of successful extensions: 533816 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 26057 Number of HSP's successfully gapped in prelim test: 25731 Number of HSP's that attempted gapping in prelim test: 408289 Number of HSP's gapped (non-prelim): 60683 length of query: 232 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 108 effective length of database: 658,790,820 effective search space: 71149408560 effective search space used: 71149408560 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 93 (39.7 bits)