BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (196 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q9AME2 Probable HTH-type transcriptional regulator matA... 392 e-108 UniRef50_C8Q4Z8 Transcriptional regulator, LuxR family n=1 Tax=P... 68 1e-10 UniRef50_D2TJM7 Putative regulatory protein n=1 Tax=Citrobacter ... 65 2e-09 UniRef50_C3SWA2 Putative uncharacterized protein n=11 Tax=Entero... 64 2e-09 UniRef50_B4SXG3 RmbA n=36 Tax=Enterobacteriaceae RepID=B4SXG3_SALNS 64 3e-09 UniRef50_Q46941 Uncharacterized protein yqeH n=35 Tax=Enterobact... 62 1e-08 UniRef50_Q6ML78 Two-component response regulator n=1 Tax=Bdellov... 54 4e-06 UniRef50_B6R3D7 Transcriptional regulatory protein FixJ n=1 Tax=... 47 3e-04 UniRef50_P0AGA8 Transcriptional regulatory protein uhpA n=167 Ta... 46 9e-04 UniRef50_A3HVN1 Two-component response regulator n=1 Tax=Algorip... 44 0.002 UniRef50_C3R1G9 Transcriptional regulator n=3 Tax=Bacteroidales ... 44 0.003 UniRef50_B5MAD0 Putative DNA binding response regulator n=1 Tax=... 44 0.003 UniRef50_A4XNE1 Two component transcriptional regulator, LuxR fa... 44 0.004 UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltapr... 43 0.005 UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=... 43 0.006 UniRef50_UPI00016A4E80 probable transcriptional activator of quo... 43 0.007 UniRef50_UPI00017463AF response regulator receiver domain protei... 43 0.007 UniRef50_B4RW61 Response regulator (Activator) in two-component ... 42 0.008 UniRef50_B1KE04 Two component transcriptional regulator, LuxR fa... 42 0.008 UniRef50_C8X5Y3 Transcriptional regulator, LuxR family n=1 Tax=N... 42 0.009 UniRef50_Q6MJE1 Two-component response regulator homolog n=1 Tax... 42 0.010 UniRef50_C2M9D5 Transcriptional regulator, LuxR family domain pr... 42 0.010 UniRef50_D1W148 Transcriptional regulator, LuxR family n=3 Tax=P... 42 0.012 UniRef50_B4D2X8 Two component transcriptional regulator, LuxR fa... 42 0.013 UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR fa... 42 0.015 UniRef50_A3HUJ9 Transcriptional regulator, LuxR family protein n... 42 0.015 UniRef50_B8KL12 Transcriptional regulator, LuxR family n=1 Tax=g... 41 0.019 UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR fa... 41 0.020 UniRef50_D0FXM2 LuxR family transcriptional regulator n=3 Tax=Er... 41 0.028 UniRef50_C4KWB3 DNA-binding response regulator n=35 Tax=pseudoma... 41 0.028 UniRef50_B8CN77 Nitrate/nitrite DNA-binding response regulator, ... 40 0.031 UniRef50_B0QRI5 Sugar phosphate antiporter n=1 Tax=Haemophilus p... 40 0.038 UniRef50_C7PCU2 Two component transcriptional regulator, LuxR fa... 40 0.038 UniRef50_B5JQZ3 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 40 0.039 UniRef50_B4CVL8 Two component transcriptional regulator, LuxR fa... 40 0.039 UniRef50_Q0K482 Transcriptional regulator, LuxR-family n=2 Tax=R... 40 0.040 UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromon... 40 0.041 UniRef50_Q1YPZ2 Transcriptional regulator, LuxR family protein n... 40 0.042 UniRef50_C2FSZ9 LuxR family response regulator n=2 Tax=Sphingoba... 40 0.046 UniRef50_Q8PM22 Transcriptional regulator n=3 Tax=Xanthomonas Re... 40 0.048 UniRef50_D2Q6G2 Two-component response regulator, LuxR family n=... 40 0.051 UniRef50_Q391P2 Two component transcriptional regulator, LuxR fa... 40 0.052 UniRef50_Q1VWI3 Transcriptional regulator n=1 Tax=Psychroflexus ... 40 0.055 UniRef50_C9MNB9 Transcriptional regulator, LuxR family domain pr... 40 0.059 UniRef50_A8GJF4 Transcriptional regulator, LuxR family n=1 Tax=S... 40 0.061 UniRef50_B9XAW3 Two component transcriptional regulator, LuxR fa... 39 0.066 UniRef50_C6MDL5 Two component transcriptional regulator, LuxR fa... 39 0.082 UniRef50_A9DX27 Response regulator n=1 Tax=Kordia algicida OT-1 ... 39 0.086 UniRef50_A9EQD2 Putative two-component system response regulator... 39 0.090 UniRef50_C1SGH5 Response regulator containing a CheY-like receiv... 39 0.093 UniRef50_B5JNS6 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 39 0.097 UniRef50_Q3JL34 DNA-binding response regulator n=30 Tax=pseudoma... 39 0.100 >UniRef50_Q9AME2 Probable HTH-type transcriptional regulator matA n=56 Tax=Bacteria RepID=MATA_ECOLX Length = 196 Score = 392 bits (1008), Expect = e-108, Method: Compositional matrix adjust. Identities = 190/196 (96%), Positives = 194/196 (98%) Query: 1 MTWQSDYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD 60 MTWQ+DYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD Sbjct: 1 MTWQNDYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD 60 Query: 61 FVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS 120 FVFINL+TDSL+EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS Sbjct: 61 FVFINLNTDSLTEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS 120 Query: 121 RDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 RDIRKEL YVINGRFLRKDIKKDKITDREMEIIRMTAQGM PKSIARIENCSVKTVYTHR Sbjct: 121 RDIRKELAYVINGRFLRKDIKKDKITDREMEIIRMTAQGMLPKSIARIENCSVKTVYTHR 180 Query: 181 RNAEAKLYSKIYKLVQ 196 RNAEAKLYSK+YKLVQ Sbjct: 181 RNAEAKLYSKLYKLVQ 196 >UniRef50_C8Q4Z8 Transcriptional regulator, LuxR family n=1 Tax=Pantoea sp. At-9b RepID=C8Q4Z8_9ENTR Length = 206 Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 90/173 (52%), Gaps = 21/173 (12%) Query: 27 IWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLS--A 84 +W + Y L ELI + ++ +D + I+ S +L FIN +EWL+ + Sbjct: 38 LWPEGNDYLKLALHELIFKGNGC------ELSEDTLIIDCSLRNLGLFIN--DEWLTFLS 89 Query: 85 VKGKQVVLIAARKSEALANYWYYNS-NIRGVVY--AGLS---RDIRKELVYVINGRFLRK 138 +G +VLI R+ A+A+YW+ S +I+GV+ AG+ RD++K L G R+ Sbjct: 90 AQGMGMVLIPDRRMIAIAHYWWRKSTSIKGVISTDAGMGNFMRDLKKRLC----GGSDRQ 145 Query: 139 DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKI 191 K T+REM ++ M G + IA + CSVK+VY H+ + K+ + I Sbjct: 146 S-KTPVATEREMHVLAMIYAGRTVQEIATLLGCSVKSVYIHKSAIKKKMGNDI 197 >UniRef50_D2TJM7 Putative regulatory protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJM7_CITRO Length = 211 Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 82/157 (52%), Gaps = 15/157 (9%) Query: 27 IWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVK 86 IW + F L ++ + D+ + +D + I+ D+++ FI D++WL K Sbjct: 38 IWPGDNPLFTDSLFYILSENDK------PALHEDLLLIDFCLDNIAFFI--DDDWLEGWK 89 Query: 87 --GKQVVLIAARKSEALANYWYYNS---NIRGVVYAGLSRDIRKELVYVINGRFLRKDIK 141 G ++VL+ R +ALA+YW+ + V G S+ +R +L V+NG+ + D Sbjct: 90 KTGARIVLVVDRFMQALAHYWHKKHPALTLLPVTGDGGSQFLR-DLENVLNGQSIMPD-G 147 Query: 142 KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 IT+ E+ ++R G+ + +A + NCS+KTVY+ Sbjct: 148 VTAITNNEISVLRKRITGLSAQRVAAVLNCSLKTVYS 184 >UniRef50_C3SWA2 Putative uncharacterized protein n=11 Tax=Enterobacteriaceae RepID=C3SWA2_ECOLX Length = 230 Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 13/172 (7%) Query: 27 IWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLS--A 84 +WS +YF +G+ E I+ + LS ++F++ S L F+ +D W+ A Sbjct: 59 MWSEESSYFNRGVVEGILTKNHNARLS------GYIFVDFSVSFLRLFLEKD--WIDYLA 110 Query: 85 VKGKQVVLIAARKSEALANYWY-YNSNIRGVVYAGLSRDIRKELV-YVINGRFLRKDIKK 142 +VL++ R ++LANYW +NS I V+Y D+ E + + GR+L + Sbjct: 111 SSDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYL-SFTRG 169 Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKL 194 + +T E I+ G P IA + + ++++Y +++ E ++ KI +L Sbjct: 170 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINEL 221 >UniRef50_B4SXG3 RmbA n=36 Tax=Enterobacteriaceae RepID=B4SXG3_SALNS Length = 205 Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 14/181 (7%) Query: 19 CQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRD 78 C N + IW +A+ KG E ++ +DR +LS F+F++ S +L F D Sbjct: 31 CHNAAFS-IWPDGNAFLKKGFIEKLL-LDRHNHLS-----SGFIFVDFSFPNLRRF--TD 81 Query: 79 NEWLSAV--KGKQVVLIAARKSEALANYWYYNSN-IRGVVYAGLSRDIRKELVY-VINGR 134 +W ++ G +VLI+ R LANYW SN I+G++Y+ ++++ ++ + GR Sbjct: 82 LQWADSLADSGMHIVLISDRSLTPLANYWILKSNKIQGIIYSDDDDIVQQQKMHRLFTGR 141 Query: 135 FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKL 194 L + + E +++ G+ + I I+N +K +Y H+ E KL I K+ Sbjct: 142 -LANSKRGRTLNYTEFILLKRFVSGISIQQIVNIDNIDIKKLYVHKLRLENKLGHSIQKI 200 Query: 195 V 195 + Sbjct: 201 I 201 >UniRef50_Q46941 Uncharacterized protein yqeH n=35 Tax=Enterobacteriaceae RepID=YQEH_ECOLI Length = 210 Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 13/172 (7%) Query: 27 IWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLS--A 84 +W +YF +G+ E I+ + LS ++F++ S L F+ +D W+ A Sbjct: 39 MWPEESSYFNRGVVEGILTKNHNARLS------GYIFVDFSVSFLRLFLEKD--WIDYLA 90 Query: 85 VKGKQVVLIAARKSEALANYWY-YNSNIRGVVYAGLSRDIRKELV-YVINGRFLRKDIKK 142 +VL++ R ++LANYW +NS I V+Y D+ E + + GR+L Sbjct: 91 STDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYL-SFTGG 149 Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKL 194 + +T E I+ G P IA + + ++++Y +++ E ++ KI +L Sbjct: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINEL 201 >UniRef50_Q6ML78 Two-component response regulator n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6ML78_BDEBA Length = 204 Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 11/107 (10%) Query: 90 VVLIAARKSEALANYWYYNSNIRGVVYAG-LSRDIRKELVYVING-RFLRKDIKK--DK- 144 +V + +S L YW NS + +V G L D+ K L+ + G RFL +I++ DK Sbjct: 82 MVFTQSLESAILKTYW--NSPVVAIVSKGSLLEDVPKALLALKRGERFLSANIREAIDKA 139 Query: 145 ----ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 +T RE+E+ RM A G K IA + CS +T+ TH+ N KL Sbjct: 140 GVEVLTKREIEVARMIATGRSNKEIAEVLGCSDQTIKTHKTNIMTKL 186 >UniRef50_B6R3D7 Transcriptional regulatory protein FixJ n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R3D7_9RHOB Length = 225 Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Query: 140 IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK----IYKLV 195 +K D++T+RE E++ AQG+Q KSIA SVKTV HR N KL + +Y+L Sbjct: 149 MKVDRLTNREREVMGYLAQGLQNKSIANALGLSVKTVEIHRHNVLTKLEVQTLVDVYQLT 208 Query: 196 Q 196 Q Sbjct: 209 Q 209 >UniRef50_P0AGA8 Transcriptional regulatory protein uhpA n=167 Tax=Gammaproteobacteria RepID=UHPA_ECO57 Length = 196 Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 11/118 (9%) Query: 80 EWLSAV-KGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI--NGRFL 136 E LS + KG ++++ S AL N+ RG + S D V+ + G +L Sbjct: 64 ELLSQLPKGMATIMLSVHDSPALVEQ-ALNAGARGFLSKRCSPDELIAAVHTVATGGCYL 122 Query: 137 RKDI-------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 DI ++D +T RE ++ AQGM K IA S KTV+ HR N KL Sbjct: 123 TPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL 180 >UniRef50_A3HVN1 Two-component response regulator n=1 Tax=Algoriphagus sp. PR1 RepID=A3HVN1_9SPHI Length = 208 Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 32/45 (71%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 K++ RE++II++ GMQ K IA + SV+T+ THR+N +KL+ Sbjct: 148 KLSRREVQIIKLIKDGMQNKEIADDLSLSVQTIETHRKNIHSKLH 192 >UniRef50_C3R1G9 Transcriptional regulator n=3 Tax=Bacteroidales RepID=C3R1G9_9BACE Length = 255 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 139 DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 D + +T+RE+E++R+ QG+ K IA S+ TV THR+N KL Sbjct: 187 DTLDEPLTNRELEVLRLMKQGLLSKEIANTLKVSINTVNTHRQNILQKL 235 >UniRef50_B5MAD0 Putative DNA binding response regulator n=1 Tax=Rhodococcus sp. PY11 RepID=B5MAD0_9NOCA Length = 222 Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 16/107 (14%) Query: 81 WLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDI 140 +L+ V QVV + L + + I V+ GL ++IR ++GR L Sbjct: 113 YLTKVASGQVV------RDTLVDVAAGQTVIPPVLQTGLVKEIRAR--QEVSGRVL---- 160 Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 +T RE++++R+ A G+ IA + SV TV TH RN KL Sbjct: 161 ----LTPRELDVLRLAATGLTTSQIAGKLHVSVPTVKTHLRNTYDKL 203 >UniRef50_A4XNE1 Two component transcriptional regulator, LuxR family n=2 Tax=Pseudomonadaceae RepID=A4XNE1_PSEMY Length = 210 Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 132 NGRFLRKDIK----KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 +G RK +K +D++T RE E++ M AQG+ K +AR SV+TV THR + KL Sbjct: 130 SGDIARKLVKPAPSEDELTPREREVLLMLAQGLNNKVMARTLQISVRTVETHRLSIRRKL 189 >UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltaproteobacteria RepID=Q2LSF1_SYNAS Length = 217 Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 11/87 (12%) Query: 101 LANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGM 160 L+N+ Y + I +V K V+ G + + ++T RE E++++ A+G+ Sbjct: 120 LSNHTYLSPTIADIVV--------KNYVHKAAGTSV---VVSSELTPRERELLQLLAEGL 168 Query: 161 QPKSIARIENCSVKTVYTHRRNAEAKL 187 K IA + SVKTV THRRN KL Sbjct: 169 SAKQIAANLHVSVKTVETHRRNITQKL 195 >UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=Gammaproteobacteria RepID=A5F1Q5_VIBC3 Length = 216 Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/47 (46%), Positives = 30/47 (63%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 K + ++ RE I+RM AQG K IA + N S +TV THR+N + KL Sbjct: 151 KPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKL 197 >UniRef50_UPI00016A4E80 probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A4E80 Length = 236 Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 10/103 (9%) Query: 87 GKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDI--KKDK 144 G +L AR +E L N+R + A +L +++ RK++ DK Sbjct: 123 GGLGMLTLARSNEELCGKELAAKNLRMCLLA--------DLTHMVLSDAYRKEMTASADK 174 Query: 145 ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 ++ RE+EI+R A G I RI + S+ TV H +NA KL Sbjct: 175 LSAREVEILRWHADGKTADEIGRILSISIDTVKFHTKNAVVKL 217 >UniRef50_UPI00017463AF response regulator receiver domain protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017463AF Length = 251 Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 32/50 (64%) Query: 138 KDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 +D + +++DRE+++ RM +GM SIA+ S KTV THR+ + KL Sbjct: 148 RDAEVSRLSDRELQVFRMIGRGMSSTSIAQELGVSSKTVETHRQRMKDKL 197 >UniRef50_B4RW61 Response regulator (Activator) in two-component regulatory system wtih UhpB, regulates uhpT expression (LuxR/UhpA family) protein n=2 Tax=Alteromonas macleodii RepID=B4RW61_ALTMD Length = 218 Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 7/69 (10%) Query: 119 LSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 LS DI K+L + + L +TDRE EI + A+G QPK IA + + KTV Sbjct: 124 LSSDISKKLAF--GDKCLTS-----LLTDREKEIFLLLAKGFQPKQIAYHIDTAPKTVMV 176 Query: 179 HRRNAEAKL 187 HR N KL Sbjct: 177 HRTNIYKKL 185 >UniRef50_B1KE04 Two component transcriptional regulator, LuxR family n=2 Tax=Alteromonadales RepID=B1KE04_SHEWM Length = 206 Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 K +T RE ++R+ A G+ K +AR + SV+T+ THRRN + KL K Sbjct: 141 KNTVLTTREQTVLRLLASGLNNKELARELDISVRTIETHRRNIKDKLAIK 190 >UniRef50_C8X5Y3 Transcriptional regulator, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X5Y3_NAKMY Length = 938 Score = 42.4 bits (98), Expect = 0.009, Method: Composition-based stats. Identities = 22/45 (48%), Positives = 28/45 (62%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 D +TDRE E+ + QG+ K IA SV+TV +H RNA AKL Sbjct: 877 DGLTDREAEVAGLVGQGLTNKQIAAQLFLSVRTVESHVRNALAKL 921 >UniRef50_Q6MJE1 Two-component response regulator homolog n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJE1_BDEBA Length = 226 Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 26/43 (60%) Query: 145 ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 +T RE+E++RM AQG K +A CS T+ TH+ N KL Sbjct: 166 LTPRELEVVRMIAQGKTNKEVAACLECSEHTIKTHKTNVMRKL 208 >UniRef50_C2M9D5 Transcriptional regulator, LuxR family domain protein n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9D5_9PORP Length = 201 Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 30/47 (63%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 K++ ++ RE E++ A+G+ K IA + + S TV THRRN AKL Sbjct: 129 KQNPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKL 175 >UniRef50_D1W148 Transcriptional regulator, LuxR family n=3 Tax=Prevotella RepID=D1W148_9BACT Length = 221 Score = 42.0 bits (97), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 136 LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 L K +KK ++DRE+E++ + QG K IA N + TV THR+N KL K Sbjct: 147 LPKVLKKKVLSDREIEVLSLIVQGYINKEIADRLNIGMTTVITHRKNIMEKLGVK 201 >UniRef50_B4D2X8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2X8_9BACT Length = 242 Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 29/161 (18%) Query: 52 LSLEKIRK---DFVFINLSTDSLS--EFINRDNEWLSAVKGKQVVLI--------AARKS 98 ++LE +R+ D I++S + E I L+ G Q++++ A R Sbjct: 59 MALEAMRRLNPDIAVIDISMPGTNGVELIKL---MLAEQPGLQILMLSMHDESVYALRAL 115 Query: 99 EALANYWYYNSNIRGVVYAGLSRDIRKELVYV---INGRFLRKDIKK---------DKIT 146 A A + V GL R + + +YV + R + K I+ DK++ Sbjct: 116 RAGAKGYVMKGEALECVLTGL-RKVGEGEIYVSPKFSDRLIFKTIQSTIAGVASPVDKLS 174 Query: 147 DREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 DRE E++R+ +G + IA + SVKTV THR + + KL Sbjct: 175 DREFEVLRLLGRGFGSREIAEELSLSVKTVETHRAHIKEKL 215 >UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=Q2RMH6_MOOTA Length = 221 Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 29/44 (65%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 ++T+RE+E++R+ A+G+ IAR SVKTV HR N KL Sbjct: 155 ELTERELEVLRLAAEGLTNAEIARRLVISVKTVQAHRANIMQKL 198 >UniRef50_A3HUJ9 Transcriptional regulator, LuxR family protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HUJ9_9SPHI Length = 269 Score = 41.6 bits (96), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 140 IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 +K +T +E +I++M GM+ K I ++ N S TV THR+N KL +K Sbjct: 201 LKTVSLTKKEKQIVKMILDGMKSKEIGQVLNISFNTVSTHRKNILRKLGAK 251 >UniRef50_B8KL12 Transcriptional regulator, LuxR family n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KL12_9GAMM Length = 294 Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 6/71 (8%) Query: 117 AGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 +G IRK L ++ D +T+RE ++I + G KS+A+ SV+TV Sbjct: 190 SGSGEGIRKHLHLALD------DFGSSLLTERETQVINLVLHGHSTKSVAQRLGISVETV 243 Query: 177 YTHRRNAEAKL 187 HR++A AKL Sbjct: 244 KLHRKHAYAKL 254 >UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAQ5_9BACT Length = 229 Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + +TDRE E+ R+ +G+ K IA + S KTV HR N + KL K Sbjct: 161 ENLTDREFEVFRLIGEGLSTKEIAANMHVSAKTVEVHRMNIKTKLGLK 208 >UniRef50_D0FXM2 LuxR family transcriptional regulator n=3 Tax=Erwinia RepID=D0FXM2_ERWPY Length = 207 Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 28/45 (62%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 + +T RE EI+R A+G+ +AR N S KTV H+RN +KL Sbjct: 139 NNLTRRETEILRYLARGISNGGVARFLNISEKTVSAHKRNIMSKL 183 >UniRef50_C4KWB3 DNA-binding response regulator n=35 Tax=pseudomallei group RepID=C4KWB3_BURPS Length = 210 Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 29/47 (61%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 +++ RE+E++R+ A GM IA S+KTV TH+ NA KL K Sbjct: 149 QLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLGLK 195 >UniRef50_B8CN77 Nitrate/nitrite DNA-binding response regulator, putative n=2 Tax=Shewanella RepID=B8CN77_SHEPW Length = 206 Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 K+ +T RE ++R+ + GM K IA+ + SV+TV TH+RN + KL Sbjct: 141 KQALVTQREQLVLRLISLGMNNKRIAQEMDVSVRTVETHKRNIKQKL 187 >UniRef50_B0QRI5 Sugar phosphate antiporter n=1 Tax=Haemophilus parasuis 29755 RepID=B0QRI5_HAEPR Length = 135 Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 26/47 (55%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 ++T RE EI + G +PK I N S KTV+ HR NA KL K Sbjct: 75 QLTKREREICELLILGFEPKEIGEKLNLSFKTVHVHRSNAINKLNVK 121 >UniRef50_C7PCU2 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PCU2_CHIPD Length = 220 Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 K++ E +++M A+GM K IA+ N S+KTV HR N KL Sbjct: 153 KLSKTEFRVMQMIAEGMSTKEIAQSLNISIKTVENHRHNISKKL 196 >UniRef50_B5JQZ3 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQZ3_9BACT Length = 222 Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 KK+++++RE E+++ A+G K IA + SVKT+ HR N KL Sbjct: 143 KKNRLSNREREVLQAVAEGFSTKQIAEMLEVSVKTIEAHRANLMKKL 189 >UniRef50_B4CVL8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVL8_9BACT Length = 217 Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 10/87 (11%) Query: 106 YYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSI 165 Y+ + + +++A K+ ++GR +TDRE EI+++ A+G K + Sbjct: 126 YFTTQVGEILFAKFLHGKPKDEEQTVDGR----------LTDREREIVQLLAEGASNKEV 175 Query: 166 ARIENCSVKTVYTHRRNAEAKLYSKIY 192 A SVKTV THR KL K + Sbjct: 176 ADSLGISVKTVETHRAAIMKKLKFKSF 202 >UniRef50_Q0K482 Transcriptional regulator, LuxR-family n=2 Tax=Ralstonia eutropha H16 RepID=Q0K482_RALEH Length = 1290 Score = 40.0 bits (92), Expect = 0.040, Method: Composition-based stats. Identities = 19/42 (45%), Positives = 27/42 (64%) Query: 145 ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAK 186 +++RE EI+ + AQ M K IAR+ N S +TV H +N AK Sbjct: 1225 LSEREREILYLLAQAMSNKKIARVLNVSAETVKWHLKNIYAK 1266 >UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q485W6_COLP3 Length = 215 Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 28/45 (62%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 +K+T RE ++ A+G K IA+I N S +TV HRRN + KL Sbjct: 151 EKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHRRNMKTKL 195 >UniRef50_Q1YPZ2 Transcriptional regulator, LuxR family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPZ2_9GAMM Length = 275 Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 138 KDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 KD +TDRE +++++ G KSIA S +TV HR+N+ AKL Sbjct: 194 KDFGTAYLTDRETQVVQLFLHGHSTKSIAERLGISPETVKLHRKNSYAKL 243 >UniRef50_C2FSZ9 LuxR family response regulator n=2 Tax=Sphingobacterium spiritivorum RepID=C2FSZ9_9SPHI Length = 216 Score = 40.0 bits (92), Expect = 0.046, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%) Query: 134 RFLRKDI--KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 +FL D+ KK K+T RE+EI+R+ Q + IA S+ TV THR+N KL Sbjct: 143 KFLSSDVFLKKYKLTSRELEILRLIGQNFTSQQIAEKLFISMFTVDTHRKNMIYKL 198 >UniRef50_Q8PM22 Transcriptional regulator n=3 Tax=Xanthomonas RepID=Q8PM22_XANAC Length = 237 Score = 40.0 bits (92), Expect = 0.048, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 4/56 (7%) Query: 136 LRKDIKKD----KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 LR+ K D ++T RE EI+++ ++G+ + IA + SVKTV THR N KL Sbjct: 139 LRRAAKADSAYTRLTSREREIVQLYSEGLSTRQIANRLHLSVKTVGTHRENCMLKL 194 >UniRef50_D2Q6G2 Two-component response regulator, LuxR family n=2 Tax=Bifidobacterium dentium RepID=D2Q6G2_9BIFI Length = 218 Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 27/45 (60%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 K+TD E I+ ++A G+ K IA S TV++HRRN + K + Sbjct: 157 KLTDAEQRILTLSASGLNAKQIATHLGISADTVFSHRRNIKTKFH 201 >UniRef50_Q391P2 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia sp. 383 RepID=Q391P2_BURS3 Length = 216 Score = 39.7 bits (91), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 108 NSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIAR 167 +S +RGV Y ++++ L+ G+ + ++ RE+EI+RM +G+ + IA Sbjct: 117 DSVLRGVPY--FPPEVQQNLLRRARGQAAKPTTPLAALSPREIEILRMIGEGLTKQQIAE 174 Query: 168 IENCSVKTVYTHRRNAEAKL 187 S TV HR N + KL Sbjct: 175 RIGHSANTVEAHRTNIKRKL 194 >UniRef50_Q1VWI3 Transcriptional regulator n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VWI3_9FLAO Length = 209 Score = 39.7 bits (91), Expect = 0.055, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 28/46 (60%) Query: 142 KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 K +++ E +I+ + A+G + IA C+V T++THRRN KL Sbjct: 144 KTSLSNAEKDILNLIAEGKTSQEIANERACAVSTIHTHRRNMAHKL 189 >UniRef50_C9MNB9 Transcriptional regulator, LuxR family domain protein n=10 Tax=Prevotella RepID=C9MNB9_9BACT Length = 349 Score = 39.7 bits (91), Expect = 0.059, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 25/43 (58%) Query: 145 ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 ++DRE ++I AQGM K IA S TV THRRN KL Sbjct: 282 LSDREKDVIVSVAQGMTNKEIANHLCISTNTVITHRRNIARKL 324 >UniRef50_A8GJF4 Transcriptional regulator, LuxR family n=1 Tax=Serratia proteamaculans 568 RepID=A8GJF4_SERP5 Length = 229 Score = 39.7 bits (91), Expect = 0.061, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 28/51 (54%) Query: 137 RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 R + +TDRE+EI+R A G + I+ S KTV H+RNA KL Sbjct: 114 RTSAHRQPLTDREIEILRYLANGQRACEISHYLCISAKTVSGHKRNAMEKL 164 >UniRef50_B9XAW3 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAW3_9BACT Length = 224 Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 111 IRGVVYAGLSRDIRKELVY-VINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIE 169 +RG VY LS+ +R +V +NG ++++DRE+E+ ++ G + IA Sbjct: 130 LRGEVY--LSKQMRSLVVQKFLNGEPAHGHFGVEQLSDRELEVFQLIGSGRRTGQIAAEL 187 Query: 170 NCSVKTVYTHRRNAEAKL 187 + S+KTV T+R + + KL Sbjct: 188 HLSIKTVETYRAHIKEKL 205 >UniRef50_C6MDL5 Two component transcriptional regulator, LuxR family n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MDL5_9PROT Length = 218 Score = 39.3 bits (90), Expect = 0.082, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 111 IRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIEN 170 ++G VY LS+ + ++L+ I + + +T E E++ + QG + IA++ Sbjct: 124 LKGNVY--LSKQMHEKLLKRIASGHSEPEQLINTLTPSEFEVLHLIGQGHSSQEIAKLLC 181 Query: 171 CSVKTVYTHRRNAEAKLYSK 190 S+KT+ THR N KL+ K Sbjct: 182 RSIKTIETHRFNIRVKLHLK 201 >UniRef50_A9DX27 Response regulator n=1 Tax=Kordia algicida OT-1 RepID=A9DX27_9FLAO Length = 213 Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 4/48 (8%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKI 191 K+T RE++I+++ AQ + K IA + SV TV +H++N LYSK+ Sbjct: 150 KLTPREIDILKLIAQNKKTKEIAELLFISVNTVQSHKKN----LYSKL 193 >UniRef50_A9EQD2 Putative two-component system response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EQD2_SORC5 Length = 212 Score = 38.9 bits (89), Expect = 0.090, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Query: 145 ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKI 191 ++DRE +++R+ A G+ K +A + SVKTV THR A+L +K+ Sbjct: 150 LSDRERQVLRLLAMGLSAKEVAAQLSISVKTVETHR----ARLCAKV 192 >UniRef50_C1SGH5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGH5_9BACT Length = 193 Score = 38.9 bits (89), Expect = 0.093, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 9/117 (7%) Query: 78 DNEWLSAVKGK----QVVLIAARKSEALANYWYYNSNIRGVVYAGLSRD-IRKELVYVIN 132 D E L+ +K K +VV++ ++++ L Y+ Y +R VY D I L V+ Sbjct: 61 DEEILNLLKNKYDTSKVVVLTTKQNDMLT-YFSYTYGVRHYVYLDADVDEIIAGLCEVLG 119 Query: 133 GRFLRKDIKK--DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 G + KK +T RE EI+++ A G + I + S TV THR KL Sbjct: 120 G-LSENNCKKRNGSLTSRECEILKLIASGKTSREIGEMLCISKNTVDTHRNKMLQKL 175 >UniRef50_B5JNS6 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNS6_9BACT Length = 220 Score = 38.9 bits (89), Expect = 0.097, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKL 194 + ++DRE +I+ A GM K IA+ S+KTV +HR N KL KI+ + Sbjct: 156 ETLSDREKQIVVFVASGMTNKEIAQNLGLSIKTVESHRSNISKKL--KIFDI 205 >UniRef50_Q3JL34 DNA-binding response regulator n=30 Tax=pseudomallei group RepID=Q3JL34_BURP1 Length = 223 Score = 38.9 bits (89), Expect = 0.100, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 132 NGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 GR L + D++T RE +++++ A GM+ + IA + N S KTV HR+ KL ++ Sbjct: 145 GGRTLASPV--DELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGAR 201 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9AME2 Probable HTH-type transcriptional regulator matA... 271 1e-71 UniRef50_B4SXG3 RmbA n=36 Tax=Enterobacteriaceae RepID=B4SXG3_SALNS 179 4e-44 UniRef50_Q46941 Uncharacterized protein yqeH n=35 Tax=Enterobact... 174 1e-42 UniRef50_C3SWA2 Putative uncharacterized protein n=11 Tax=Entero... 172 6e-42 UniRef50_C8Q4Z8 Transcriptional regulator, LuxR family n=1 Tax=P... 164 1e-39 UniRef50_D2TJM7 Putative regulatory protein n=1 Tax=Citrobacter ... 159 4e-38 UniRef50_P0AGA8 Transcriptional regulatory protein uhpA n=167 Ta... 109 4e-23 UniRef50_Q6ML78 Two-component response regulator n=1 Tax=Bdellov... 96 9e-19 UniRef50_B6R3D7 Transcriptional regulatory protein FixJ n=1 Tax=... 71 3e-11 Sequences not found previously or not previously below threshold: UniRef50_B0BF91 Putative uncharacterized protein n=9 Tax=Enterob... 98 1e-19 UniRef50_C8Q4X9 Response regulator receiver protein n=1 Tax=Pant... 81 3e-14 UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 T... 62 8e-09 UniRef50_C4KBL1 Two component transcriptional regulator, LuxR fa... 60 4e-08 UniRef50_A7HA46 Two component transcriptional regulator, LuxR fa... 60 4e-08 UniRef50_Q13QW9 Two component transcriptional regulator, LuxR fa... 60 5e-08 UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR fa... 58 1e-07 UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ecto... 58 1e-07 UniRef50_B2JSN3 Two component transcriptional regulator, LuxR fa... 58 2e-07 UniRef50_C0N6H7 Response regulator receiver domain protein n=1 T... 58 2e-07 UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR fa... 58 2e-07 UniRef50_B6A2W0 Two component transcriptional regulator, LuxR fa... 57 3e-07 UniRef50_C7I0E4 Two component transcriptional regulator, LuxR fa... 57 3e-07 UniRef50_A4ABN5 Two-component system response regulator n=1 Tax=... 57 3e-07 UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromon... 57 3e-07 UniRef50_Q72LA2 Probable two-component response regulator n=1 Ta... 57 4e-07 UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR fa... 57 4e-07 UniRef50_B6BTE7 Two component transcriptional regulator, LuxR fa... 57 4e-07 UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltapr... 57 5e-07 UniRef50_Q5NZX4 Two-component response regulator n=3 Tax=Betapro... 57 5e-07 UniRef50_C1D8M5 Probable transcriptional regulatory, LuxR family... 56 5e-07 UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 T... 56 5e-07 UniRef50_Q47DK2 Two component transcriptional regulator, LuxR fa... 56 6e-07 UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR fa... 56 6e-07 UniRef50_Q3JL34 DNA-binding response regulator n=30 Tax=pseudoma... 56 6e-07 UniRef50_Q391P2 Two component transcriptional regulator, LuxR fa... 56 6e-07 UniRef50_B1ZN14 Two component transcriptional regulator, LuxR fa... 56 6e-07 UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator rece... 56 6e-07 UniRef50_C4KWB3 DNA-binding response regulator n=35 Tax=pseudoma... 56 6e-07 UniRef50_Q023R1 Two component transcriptional regulator, LuxR fa... 56 6e-07 UniRef50_A1WN26 Two component transcriptional regulator, LuxR fa... 56 7e-07 UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi... 56 7e-07 UniRef50_Q46SR4 Two component transcriptional regulator, LuxR fa... 56 8e-07 UniRef50_D0LYS4 Two component transcriptional regulator, LuxR fa... 56 9e-07 UniRef50_A4TJY3 Two-component response regulator n=27 Tax=Yersin... 56 9e-07 UniRef50_B5JQZ3 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 56 1e-06 UniRef50_A6CG81 DNA-binding response regulator, LuxR family prot... 55 1e-06 UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepI... 55 2e-06 UniRef50_A0NNP3 Response regulator containing a CheY-like receiv... 55 2e-06 UniRef50_C7LUF3 Two component transcriptional regulator, LuxR fa... 55 2e-06 UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=... 55 2e-06 UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteri... 55 2e-06 UniRef50_UPI00017452CB response regulator with a HTH DNA-binding... 55 2e-06 UniRef50_A7LKW1 Putative two component transcriptional regulator... 55 2e-06 UniRef50_Q313W8 Two component transcriptional regulator, LuxR fa... 54 2e-06 UniRef50_A4W740 Two component transcriptional regulator, LuxR fa... 54 2e-06 UniRef50_Q2W8X3 Response regulator n=2 Tax=Magnetospirillum RepI... 54 2e-06 UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR fa... 54 2e-06 UniRef50_C6C961 Two component transcriptional regulator, LuxR fa... 54 2e-06 UniRef50_A6AS40 Two component response regulator n=5 Tax=Vibrio ... 54 2e-06 UniRef50_C6DD36 Two component transcriptional regulator, LuxR fa... 54 3e-06 UniRef50_Q6MJE1 Two-component response regulator homolog n=1 Tax... 54 3e-06 UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR fa... 54 3e-06 UniRef50_B4DAD9 Two component transcriptional regulator, LuxR fa... 54 3e-06 UniRef50_Q3BU15 Two-component system response regulator, LuxR fa... 54 3e-06 UniRef50_C7RKP7 Two component transcriptional regulator, LuxR fa... 54 3e-06 UniRef50_Q2W0G1 Response regulator containing a CheY-like receiv... 54 4e-06 UniRef50_B4D2X8 Two component transcriptional regulator, LuxR fa... 54 4e-06 UniRef50_Q7NTU2 Probable transcriptional regulatory, LuxR family... 53 4e-06 UniRef50_Q2BNZ3 Transcriptional regulator, LuxR family protein n... 53 4e-06 UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacilla... 53 4e-06 UniRef50_B1KE04 Two component transcriptional regulator, LuxR fa... 53 4e-06 UniRef50_Q11XC0 Fimbrial Z protein; probable signal transducer n... 53 4e-06 UniRef50_Q2YB36 Two component transcriptional regulator, LuxR fa... 53 5e-06 UniRef50_B9Z8S5 Two component transcriptional regulator, LuxR fa... 53 5e-06 UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 ... 53 5e-06 UniRef50_Q0A525 Two component transcriptional regulator, LuxR fa... 53 5e-06 UniRef50_A0JU95 Transcriptional regulator, LuxR family n=1 Tax=A... 53 5e-06 UniRef50_D0IVR3 Two component transcriptional regulator, LuxR n=... 53 5e-06 UniRef50_C6VVK2 Two component transcriptional regulator, LuxR fa... 53 5e-06 UniRef50_D0IY57 Two component transcriptional regulator, LuxR n=... 53 5e-06 UniRef50_B4CVL8 Two component transcriptional regulator, LuxR fa... 53 5e-06 UniRef50_B2JQB0 Two component transcriptional regulator, LuxR fa... 53 5e-06 UniRef50_Q0EZ33 Regulatory protein, LuxR:Response regulator rece... 53 6e-06 UniRef50_C4KD43 Two component transcriptional regulator, LuxR fa... 53 6e-06 UniRef50_Q47I89 Two component transcriptional regulator, LuxR fa... 53 7e-06 UniRef50_A8AF51 Putative uncharacterized protein n=1 Tax=Citroba... 52 7e-06 UniRef50_P0AEL9 Fimbriae Z protein n=80 Tax=Enterobacteriaceae R... 52 7e-06 UniRef50_D1W148 Transcriptional regulator, LuxR family n=3 Tax=P... 52 7e-06 UniRef50_C6C0G1 Two component transcriptional regulator, LuxR fa... 52 7e-06 UniRef50_B9XL75 Two component transcriptional regulator, LuxR fa... 52 8e-06 UniRef50_C1DAE4 Probable transcriptional regulatory protein, Lux... 52 8e-06 UniRef50_C6CGT1 Two component transcriptional regulator, LuxR fa... 52 8e-06 UniRef50_A6UL44 Response regulator receiver protein n=7 Tax=Rhiz... 52 8e-06 UniRef50_A9IGY8 Two-component response regulator n=3 Tax=Burkhol... 52 8e-06 UniRef50_C5S952 Two component transcriptional regulator, LuxR fa... 52 8e-06 UniRef50_Q0SZI3 Putative uncharacterized protein n=2 Tax=Shigell... 52 8e-06 UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplas... 52 9e-06 UniRef50_A9EQD2 Putative two-component system response regulator... 52 9e-06 UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=... 52 9e-06 UniRef50_Q89DY0 Two-component response regulator n=1 Tax=Bradyrh... 52 1e-05 UniRef50_UPI0001C31456 two component transcriptional regulator, ... 52 1e-05 UniRef50_C7PJC5 Two component transcriptional regulator, LuxR fa... 52 1e-05 UniRef50_B1ZU68 Two component transcriptional regulator, LuxR fa... 52 1e-05 UniRef50_Q2BNR9 DNA-binding response regulator, LuxR family prot... 52 1e-05 UniRef50_A5FQU5 Two component transcriptional regulator, LuxR fa... 52 1e-05 UniRef50_C1ZLY1 Response regulator containing a CheY-like receiv... 52 1e-05 UniRef50_A6GFX0 Two component transcriptional regulator, LuxR fa... 52 1e-05 UniRef50_Q04VJ6 Receiver component of a two-component response r... 52 1e-05 UniRef50_C4UJG9 Response regulator containing a CheY-like receiv... 52 1e-05 UniRef50_UPI00016C4750 two-component transcriptional regulator, ... 52 1e-05 UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=... 52 1e-05 UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium ... 52 1e-05 UniRef50_C7PCU2 Two component transcriptional regulator, LuxR fa... 52 1e-05 UniRef50_C9LCY4 Transcriptional regulator, LuxR family domain pr... 52 1e-05 UniRef50_A2SC82 Two component transcriptional regulator, LuxR fa... 52 1e-05 UniRef50_C6VTA1 Transcriptional regulator, LuxR family n=1 Tax=D... 52 1e-05 UniRef50_UPI00017443C2 hypothetical protein VspiD_13430 n=2 Tax=... 52 1e-05 UniRef50_C7QC31 Two component transcriptional regulator, LuxR fa... 52 1e-05 UniRef50_C4XMF2 NarL family two-component response regulator n=1... 52 2e-05 UniRef50_UPI0001AEC81D LuxR family transcriptional regulator n=1... 52 2e-05 UniRef50_B0SY65 Two component transcriptional regulator, LuxR fa... 52 2e-05 UniRef50_Q2RYV1 Two-component response regulator n=1 Tax=Salinib... 52 2e-05 UniRef50_A3U430 DNA-binding response regulator, LuxR family prot... 51 2e-05 UniRef50_C1TL94 Response regulator containing a CheY-like receiv... 51 2e-05 UniRef50_A0LGT7 Two component transcriptional regulator, LuxR fa... 51 2e-05 UniRef50_A3Z7P9 Two-component response regulator, CheY-like rece... 51 2e-05 UniRef50_Q1GM69 Transcriptional regulator, LuxR family n=7 Tax=R... 51 2e-05 UniRef50_A8L345 Two component transcriptional regulator, LuxR fa... 51 2e-05 UniRef50_UPI0001746AEC response regulator with a HTH DNA-binding... 51 2e-05 UniRef50_Q7UXT1 Response regulator n=1 Tax=Rhodopirellula baltic... 51 2e-05 UniRef50_B8H3Q4 Two-component response regulator n=12 Tax=Bacter... 51 2e-05 UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC... 51 2e-05 UniRef50_B5JNS6 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 51 2e-05 UniRef50_A2SCN0 Two-component response regulator n=1 Tax=Methyli... 51 2e-05 UniRef50_P58664 Uncharacterized response regulatory protein ygeK... 51 2e-05 UniRef50_C8PZQ8 PAS domain containing response regulator, LuxR f... 51 2e-05 UniRef50_C8WS10 Two component transcriptional regulator, LuxR fa... 51 2e-05 UniRef50_B9Z3N9 Two component transcriptional regulator, LuxR fa... 51 2e-05 UniRef50_B4CWX5 Two component transcriptional regulator, LuxR fa... 51 2e-05 UniRef50_C9PHC4 Putative fimbrial protein Z transcriptional regu... 51 2e-05 UniRef50_A3VTU0 Two-component response regulator n=1 Tax=Parvula... 51 2e-05 UniRef50_B6IQR3 Transcriptional regulatory protein FixJ n=1 Tax=... 51 2e-05 UniRef50_A5FAZ3 Two component transcriptional regulator, LuxR fa... 51 2e-05 UniRef50_UPI00017463AF response regulator receiver domain protei... 51 2e-05 UniRef50_Q1GZT3 Two component transcriptional regulator, LuxR fa... 51 2e-05 UniRef50_A1AKZ0 Two component transcriptional regulator, LuxR fa... 51 2e-05 UniRef50_D2QQM0 Two component transcriptional regulator, LuxR fa... 51 2e-05 UniRef50_B8D0J2 Two component transcriptional regulator, LuxR fa... 51 2e-05 UniRef50_C6XAP6 Two component transcriptional regulator, LuxR fa... 51 2e-05 UniRef50_A0L9F1 Two component transcriptional regulator, LuxR fa... 51 2e-05 UniRef50_P31802 Nitrate/nitrite response regulator protein narP ... 51 3e-05 UniRef50_C7RMN3 Two component transcriptional regulator, LuxR fa... 51 3e-05 UniRef50_A1K8Y3 Two-component response regulator n=6 Tax=Proteob... 51 3e-05 UniRef50_C1ZHR0 Response regulator n=1 Tax=Planctomyces limnophi... 51 3e-05 UniRef50_Q0C2U0 DNA-binding response regulator FixJ n=1 Tax=Hyph... 51 3e-05 UniRef50_B8G436 Transcriptional regulator, LuxR family n=3 Tax=C... 51 3e-05 UniRef50_A8G0P8 Two component transcriptional regulator, LuxR fa... 51 3e-05 UniRef50_A6UG27 Response regulator receiver protein n=1 Tax=Sino... 51 3e-05 UniRef50_Q07JN9 Two component transcriptional regulator, LuxR fa... 51 3e-05 UniRef50_C3R1G9 Transcriptional regulator n=3 Tax=Bacteroidales ... 51 3e-05 UniRef50_A5VJY7 Two component transcriptional regulator, LuxR fa... 51 3e-05 UniRef50_UPI00017458E5 two component transcriptional regulator, ... 51 3e-05 UniRef50_B2STP5 Transcriptional regulator LuxR/uhpA family n=22 ... 51 3e-05 UniRef50_A4WGH9 Two component transcriptional regulator, LuxR fa... 51 3e-05 UniRef50_B8L628 Regulatory protein, LuxR:Response regulator rece... 51 3e-05 UniRef50_B3RBJ1 Putative transcriptional regulator, signal recei... 51 3e-05 UniRef50_B3PWQ9 Two-component response regulator nitrogen regula... 51 3e-05 UniRef50_C6W2Z0 Two component transcriptional regulator, LuxR fa... 51 3e-05 UniRef50_A5WFD3 Two component transcriptional regulator, LuxR fa... 51 3e-05 UniRef50_B1T1G9 Two component transcriptional regulator, LuxR fa... 51 3e-05 UniRef50_C1ZGK9 Response regulator containing a CheY-like receiv... 51 3e-05 UniRef50_B5JEZ9 Transcriptional regulator, LuxR family protein n... 51 3e-05 UniRef50_Q5NY27 DNA-binding response regulator, LuxR family n=1 ... 51 3e-05 UniRef50_C8QGG5 Two component transcriptional regulator, LuxR fa... 51 3e-05 UniRef50_Q21TB2 Transcriptional regulator, LuxR family n=1 Tax=R... 51 3e-05 UniRef50_Q021D5 Two component transcriptional regulator, LuxR fa... 51 3e-05 UniRef50_A9BWP2 Two component transcriptional regulator, LuxR fa... 51 3e-05 UniRef50_UPI0001C314AF two component transcriptional regulator, ... 51 3e-05 UniRef50_Q5E1C3 Two component response regulator n=17 Tax=Gammap... 51 3e-05 UniRef50_UPI0001744C34 response regulator with a HTH DNA-binding... 51 3e-05 UniRef50_A4XNE1 Two component transcriptional regulator, LuxR fa... 50 4e-05 UniRef50_C6VTJ6 Two component transcriptional regulator, LuxR fa... 50 4e-05 UniRef50_C4XGR4 Putative NarL family two-component response regu... 50 4e-05 UniRef50_B8CMA1 Response regulator containing a CheY-like receiv... 50 4e-05 UniRef50_B1ZPK5 Two component transcriptional regulator, LuxR fa... 50 4e-05 UniRef50_Q7NWW0 Probable two-component response regulator, LuxR ... 50 4e-05 UniRef50_B8EIF2 Two component transcriptional regulator, LuxR fa... 50 4e-05 UniRef50_D2R8D7 Two component transcriptional regulator, LuxR fa... 50 4e-05 UniRef50_A0LVS2 Two component transcriptional regulator, LuxR fa... 50 4e-05 UniRef50_UPI0001744DFC response regulator with a HTH DNA-binding... 50 4e-05 UniRef50_A9FM25 DNA-binding response regulator n=1 Tax=Sorangium... 50 4e-05 UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR fa... 50 4e-05 UniRef50_Q46V74 Regulatory protein, LuxR:Response regulator rece... 50 4e-05 UniRef50_C1A5E6 NarL family two-component response regulator n=1... 50 4e-05 UniRef50_Q3IGR9 Response regulator (Activator) in two-component ... 50 4e-05 UniRef50_C9PZ73 Transcriptional regulator n=6 Tax=Prevotella Rep... 50 4e-05 UniRef50_C1A6M2 NarL family two-component response regulator n=1... 50 4e-05 UniRef50_Q2JYB4 Probable two-component response regulator protei... 50 4e-05 UniRef50_A0NVX8 Two component transcriptional regulator, LuxR fa... 50 4e-05 UniRef50_Q7UVB4 Nitrate/nitrite regulatory protein narP n=1 Tax=... 50 5e-05 UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillac... 50 5e-05 UniRef50_UPI00017468E1 two-component response regulator n=1 Tax=... 50 5e-05 UniRef50_B8IGH6 Two component transcriptional regulator, LuxR fa... 50 5e-05 UniRef50_C4ZNR1 Two component transcriptional regulator, LuxR fa... 50 5e-05 UniRef50_C4DI56 Response regulator containing a CheY-like receiv... 50 5e-05 UniRef50_A9B6R2 ATP-dependent transcriptional regulator, MalT-li... 50 5e-05 UniRef50_Q15U24 Two component transcriptional regulator, LuxR fa... 50 5e-05 UniRef50_A4BMD7 Response regulator n=1 Tax=Nitrococcus mobilis N... 50 5e-05 UniRef50_C4ZM15 Two component transcriptional regulator, LuxR fa... 50 5e-05 UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family prot... 50 5e-05 UniRef50_A1AUQ3 Two component transcriptional regulator, LuxR fa... 50 5e-05 UniRef50_Q5P6A6 Two-component response regulator n=4 Tax=Rhodocy... 50 5e-05 UniRef50_A3D3Y4 Two component transcriptional regulator, LuxR fa... 50 5e-05 UniRef50_UPI000038452B COG2197: Response regulator containing a ... 50 5e-05 UniRef50_D1AEE5 Two component transcriptional regulator, LuxR fa... 50 5e-05 UniRef50_B4D4R4 Two component transcriptional regulator, LuxR fa... 50 5e-05 UniRef50_C7Q6M6 Two component transcriptional regulator, LuxR fa... 50 5e-05 UniRef50_C3KMY2 Putative uncharacterized protein n=1 Tax=Rhizobi... 50 5e-05 UniRef50_Q0FK57 Putative two-component response regulator n=1 Ta... 50 5e-05 UniRef50_Q124P8 Two component transcriptional regulator, LuxR fa... 50 5e-05 UniRef50_Q1QVM5 Two component transcriptional regulator, LuxR fa... 50 5e-05 UniRef50_C6QDU5 Two component transcriptional regulator, LuxR fa... 50 6e-05 UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 ... 50 6e-05 UniRef50_B7AAT6 Two component transcriptional regulator, LuxR fa... 50 6e-05 UniRef50_A8TRW2 Response regulator, NarL-family protein n=1 Tax=... 50 6e-05 UniRef50_Q3JAH3 Two component transcriptional regulator, LuxR fa... 50 6e-05 UniRef50_Q1LMP7 Two component transcriptional regulator, LuxR fa... 50 6e-05 UniRef50_C5S6K7 Two component transcriptional regulator, LuxR fa... 50 6e-05 UniRef50_C6E3E1 Two component transcriptional regulator, LuxR fa... 50 6e-05 UniRef50_A3XI64 DNA-binding response regulator, LuxR family prot... 50 6e-05 UniRef50_D1Y4J2 Two-component response regulator n=1 Tax=Pyramid... 50 6e-05 UniRef50_Q89GQ5 Two-component response regulator n=1 Tax=Bradyrh... 50 6e-05 UniRef50_Q7NCA4 LuxR family transcriptional regulatory protein n... 49 6e-05 UniRef50_C1SGH5 Response regulator containing a CheY-like receiv... 49 6e-05 UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR fa... 49 6e-05 UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides... 49 6e-05 UniRef50_Q01NC6 Two component transcriptional regulator, LuxR fa... 49 6e-05 UniRef50_B3E9L1 Two component transcriptional regulator, LuxR fa... 49 6e-05 UniRef50_B4CYJ9 Two component transcriptional regulator, LuxR fa... 49 6e-05 UniRef50_A9DUF6 Two-component response regulator n=1 Tax=Oceanib... 49 6e-05 UniRef50_C5V5K1 Two component transcriptional regulator, LuxR fa... 49 6e-05 UniRef50_Q7MEM2 Response regulator VieA n=31 Tax=Vibrio RepID=Q7... 49 7e-05 UniRef50_A8U4H7 Transcriptional regulator, LuxR family protein n... 49 7e-05 UniRef50_C8X5Y3 Transcriptional regulator, LuxR family n=1 Tax=N... 49 7e-05 UniRef50_C1DGA2 Transcriptional regulator, LuxR family n=3 Tax=P... 49 7e-05 UniRef50_C1DAL9 Response regulator n=3 Tax=Proteobacteria RepID=... 49 7e-05 UniRef50_A1ATT6 Two component transcriptional regulator, LuxR fa... 49 7e-05 UniRef50_UPI0001B57527 transcriptional regulator, LuxR family pr... 49 7e-05 UniRef50_D2TRD6 LuxR-family transcriptional regulator n=1 Tax=Ci... 49 7e-05 UniRef50_C7RSC2 Two component transcriptional regulator, LuxR fa... 49 7e-05 >UniRef50_Q9AME2 Probable HTH-type transcriptional regulator matA n=56 Tax=Bacteria RepID=MATA_ECOLX Length = 196 Score = 271 bits (692), Expect = 1e-71, Method: Composition-based stats. Identities = 190/196 (96%), Positives = 194/196 (98%) Query: 1 MTWQSDYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD 60 MTWQ+DYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD Sbjct: 1 MTWQNDYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD 60 Query: 61 FVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS 120 FVFINL+TDSL+EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS Sbjct: 61 FVFINLNTDSLTEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS 120 Query: 121 RDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 RDIRKEL YVINGRFLRKDIKKDKITDREMEIIRMTAQGM PKSIARIENCSVKTVYTHR Sbjct: 121 RDIRKELAYVINGRFLRKDIKKDKITDREMEIIRMTAQGMLPKSIARIENCSVKTVYTHR 180 Query: 181 RNAEAKLYSKIYKLVQ 196 RNAEAKLYSK+YKLVQ Sbjct: 181 RNAEAKLYSKLYKLVQ 196 >UniRef50_B4SXG3 RmbA n=36 Tax=Enterobacteriaceae RepID=B4SXG3_SALNS Length = 205 Score = 179 bits (454), Expect = 4e-44, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 12/180 (6%) Query: 19 CQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRD 78 C N + IW +A+ KG E ++ +DR +LS F+F++ S +L F D Sbjct: 31 CHNAAFS-IWPDGNAFLKKGFIEKLL-LDRHNHLS-----SGFIFVDFSFPNLRRF--TD 81 Query: 79 NEWLSAV--KGKQVVLIAARKSEALANYWYYNSN-IRGVVYAGLSRDIRKELVYVINGRF 135 +W ++ G +VLI+ R LANYW SN I+G++Y+ ++++ ++ + Sbjct: 82 LQWADSLADSGMHIVLISDRSLTPLANYWILKSNKIQGIIYSDDDDIVQQQKMHRLFTGR 141 Query: 136 LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKLV 195 L + + E +++ G+ + I I+N +K +Y H+ E KL I K++ Sbjct: 142 LANSKRGRTLNYTEFILLKRFVSGISIQQIVNIDNIDIKKLYVHKLRLENKLGHSIQKII 201 >UniRef50_Q46941 Uncharacterized protein yqeH n=35 Tax=Enterobacteriaceae RepID=YQEH_ECOLI Length = 210 Score = 174 bits (441), Expect = 1e-42, Method: Composition-based stats. Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 14/180 (7%) Query: 19 CQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRD 78 C N +W +YF +G+ E I+ + LS ++F++ S L F+ +D Sbjct: 32 CANSCF-CMWPEESSYFNRGVVEGILTKNHNARLS------GYIFVDFSVSFLRLFLEKD 84 Query: 79 NEWLS--AVKGKQVVLIAARKSEALANYWY-YNSNIRGVVYAGLSRDIRKELV-YVINGR 134 W+ A +VL++ R ++LANYW +NS I V+Y D+ E + + GR Sbjct: 85 --WIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGR 142 Query: 135 FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKL 194 +L + +T E I+ G P IA + + ++++Y +++ E ++ KI +L Sbjct: 143 YLS-FTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINEL 201 >UniRef50_C3SWA2 Putative uncharacterized protein n=11 Tax=Enterobacteriaceae RepID=C3SWA2_ECOLX Length = 230 Score = 172 bits (436), Expect = 6e-42, Method: Composition-based stats. Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 14/180 (7%) Query: 19 CQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRD 78 C N +WS +YF +G+ E I+ + LS ++F++ S L F+ +D Sbjct: 52 CANSCF-CMWSEESSYFNRGVVEGILTKNHNARLS------GYIFVDFSVSFLRLFLEKD 104 Query: 79 NEWLS--AVKGKQVVLIAARKSEALANYWY-YNSNIRGVVYAGLSRDIRKELV-YVINGR 134 W+ A +VL++ R ++LANYW +NS I V+Y D+ E + + GR Sbjct: 105 --WIDYLASSDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGR 162 Query: 135 FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKL 194 +L + + +T E I+ G P IA + + ++++Y +++ E ++ KI +L Sbjct: 163 YLS-FTRGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINEL 221 >UniRef50_C8Q4Z8 Transcriptional regulator, LuxR family n=1 Tax=Pantoea sp. At-9b RepID=C8Q4Z8_9ENTR Length = 206 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 21/173 (12%) Query: 27 IWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLS--A 84 +W + Y L ELI + ++ +D + I+ S +L FIN +EWL+ + Sbjct: 38 LWPEGNDYLKLALHELIFKGNGC------ELSEDTLIIDCSLRNLGLFIN--DEWLTFLS 89 Query: 85 VKGKQVVLIAARKSEALANYWYYNSN-IRGVVYAGLS-----RDIRKELVYVINGRFLRK 138 +G +VLI R+ A+A+YW+ S I+GV+ RD++K L G R+ Sbjct: 90 AQGMGMVLIPDRRMIAIAHYWWRKSTSIKGVISTDAGMGNFMRDLKKRLC----GGSDRQ 145 Query: 139 DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKI 191 K T+REM ++ M G + IA + CSVK+VY H+ + K+ + I Sbjct: 146 S-KTPVATEREMHVLAMIYAGRTVQEIATLLGCSVKSVYIHKSAIKKKMGNDI 197 >UniRef50_D2TJM7 Putative regulatory protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJM7_CITRO Length = 211 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 49/176 (27%), Positives = 92/176 (52%), Gaps = 17/176 (9%) Query: 27 IWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVK 86 IW + F L ++ + D+ + +D + I+ D+++ FI D++WL K Sbjct: 38 IWPGDNPLFTDSLFYILSENDK------PALHEDLLLIDFCLDNIAFFI--DDDWLEGWK 89 Query: 87 --GKQVVLIAARKSEALANYWYYNSN---IRGVVYAGLSRDIRKELVYVINGRFLRKDIK 141 G ++VL+ R +ALA+YW+ + V G S+ +R +L V+NG+ + D Sbjct: 90 KTGARIVLVVDRFMQALAHYWHKKHPALTLLPVTGDGGSQFLR-DLENVLNGQSIMPD-G 147 Query: 142 KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY--SKIYKLV 195 IT+ E+ ++R G+ + +A + NCS+KTVY+ + + KL +++ KL+ Sbjct: 148 VTAITNNEISVLRKRITGLSAQRVAAVLNCSLKTVYSCQYSLCRKLGAPARLEKLI 203 >UniRef50_P0AGA8 Transcriptional regulatory protein uhpA n=167 Tax=Gammaproteobacteria RepID=UHPA_ECO57 Length = 196 Score = 109 bits (273), Expect = 4e-23, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 16/138 (11%) Query: 63 FINLSTDSLSEFINRDNEWLSAV-KGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSR 121 ++S +S E LS + KG ++++ S AL N+ RG + S Sbjct: 52 ICDISMPDIS-----GLELLSQLPKGMATIMLSVHDSPALVEQ-ALNAGARGFLSKRCSP 105 Query: 122 DIRKELVYVI--NGRFLRKDI-------KKDKITDREMEIIRMTAQGMQPKSIARIENCS 172 D V+ + G +L DI ++D +T RE ++ AQGM K IA S Sbjct: 106 DELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLS 165 Query: 173 VKTVYTHRRNAEAKLYSK 190 KTV+ HR N KL Sbjct: 166 PKTVHVHRANLMEKLGVS 183 >UniRef50_B0BF91 Putative uncharacterized protein n=9 Tax=Enterobacteriaceae RepID=B0BF91_ECOLX Length = 209 Score = 98.3 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 73/181 (40%), Gaps = 12/181 (6%) Query: 19 CQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRD 78 CQ+ W YF G+ E ++ + + +F++ S L F N Sbjct: 33 CQDYCF-CTWPEGSGYFSLGIMEGLLKQNYNN------LYLGCIFVDFSISHLRFFTN-- 83 Query: 79 NEWLSAV--KGKQVVLIAARKSEALANYWYYNS-NIRGVVYAGLSRDIRKELVYVINGRF 135 W+ + ++V++ + + LANYW+ +S +I V+Y + E + Sbjct: 84 ERWIDYLIETKLKIVIVCDKYLKPLANYWFKHSKDIFLVIYQQDRLTLACEKLKKRFIYQ 143 Query: 136 LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKLV 195 + +++ E ++ G +A N ++T+Y +R AE K+ + I L Sbjct: 144 RDAFFGGESLSELEFAVLSALISGDGCLQLADELNVDIRTIYAAKRRAEKKMGADINTLF 203 Query: 196 Q 196 + Sbjct: 204 R 204 >UniRef50_Q6ML78 Two-component response regulator n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6ML78_BDEBA Length = 204 Score = 95.6 bits (236), Expect = 9e-19, Method: Composition-based stats. Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 11/110 (10%) Query: 90 VVLIAARKSEALANYWYYNSNIRGVVYAG-LSRDIRKELVYVING-RFLRKDIK------ 141 +V + +S L YW NS + +V G L D+ K L+ + G RFL +I+ Sbjct: 82 MVFTQSLESAILKTYW--NSPVVAIVSKGSLLEDVPKALLALKRGERFLSANIREAIDKA 139 Query: 142 -KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + +T RE+E+ RM A G K IA + CS +T+ TH+ N KL Sbjct: 140 GVEVLTKREIEVARMIATGRSNKEIAEVLGCSDQTIKTHKTNIMTKLGVN 189 >UniRef50_C8Q4X9 Response regulator receiver protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q4X9_9ENTR Length = 201 Score = 80.6 bits (197), Expect = 3e-14, Method: Composition-based stats. Identities = 32/179 (17%), Positives = 77/179 (43%), Gaps = 13/179 (7%) Query: 17 MECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFIN 76 M+ + + IW + Y G+ + + ++ F+F++ S ++ F Sbjct: 25 MQDHSDVEYAIWPDRNYYLRLGIHATLREKQHN------HLKFSFIFVDFSHYNIKFF-- 76 Query: 77 RDNEWLSAV--KGKQVVLIAARKSEALANYWYYNSNIRGVV--YAGLSRDIRKELVYVIN 132 D +W+ + G ++L++ + + LA++W+ + V + + I K++ V+ Sbjct: 77 SDADWIKNLARSGSGLILLSDYRMDNLASWWWKHHQRIATVIYSSDCQQTINKKIKDVLI 136 Query: 133 GRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKI 191 GR+ +K +T E+E++ + + IA K +Y R + + L ++ Sbjct: 137 GRW-GNGVKAGSLTTSEVEVLNLLVREYTLTEIADSLQLDKKKLYNIRFSLQKNLTVRL 194 >UniRef50_B6R3D7 Transcriptional regulatory protein FixJ n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R3D7_9RHOB Length = 225 Score = 70.6 bits (171), Expect = 3e-11, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%) Query: 140 IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK----IYKLV 195 +K D++T+RE E++ AQG+Q KSIA SVKTV HR N KL + +Y+L Sbjct: 149 MKVDRLTNREREVMGYLAQGLQNKSIANALGLSVKTVEIHRHNVLTKLEVQTLVDVYQLT 208 Query: 196 Q 196 Q Sbjct: 209 Q 209 >UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 Tax=Vibrio RepID=C9QDP7_VIBOR Length = 209 Score = 62.5 bits (150), Expect = 8e-09, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 18/149 (12%) Query: 56 KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVV 115 +++ D + ++++ +L+ I + V++++ S + +G V Sbjct: 45 ELKPDVLLLDINMPNLNG-IEVLEQLAKTSSATSVIMLSMHDSRDYVVR-SVKAGAKGYV 102 Query: 116 YAG-LSRDIRKELVYVINGRFL---------------RKDIKKDKITDREMEIIRMTAQG 159 S ++ + V GR + K D ++ RE ++++ A G Sbjct: 103 LKDVGSEELVMAINQVAQGRSYLCPQASDRLLEQINEAPEEKDDTLSKRESDVLKAIANG 162 Query: 160 MQPKSIARIENCSVKTVYTHRRNAEAKLY 188 K IA + SV+TV THR + KL Sbjct: 163 AGNKEIADSLHISVRTVETHRLRIKKKLG 191 >UniRef50_C4KBL1 Two component transcriptional regulator, LuxR family n=8 Tax=Betaproteobacteria RepID=C4KBL1_THASP Length = 212 Score = 60.2 bits (144), Expect = 4e-08, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 145 ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 +T RE E++ + G K IA + S+KTV HR K+ + +LVQ Sbjct: 148 LTQREREVLELIIVGKLNKQIADVLGISIKTVEVHRARVMEKMGAHSLAELVQ 200 >UniRef50_A7HA46 Two component transcriptional regulator, LuxR family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HA46_ANADF Length = 212 Score = 60.2 bits (144), Expect = 4e-08, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 65/168 (38%), Gaps = 24/168 (14%) Query: 45 DIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANY 104 R +++R D V ++++ L+ + E ++V +++L+ S+ L Sbjct: 30 SNGREAVRLAQELRPDVVVLDVTMPELNG-LEATREIRASVPDTEIILLTVHDSDQLLGQ 88 Query: 105 WYYNSNIRGVVYAGLSRDIRKELVYVI----------------------NGRFLRKDIKK 142 ++ RG V + + + + + + + Sbjct: 89 -ALDAGARGYVLKEDAARHLVDAIDALSKHAPYVPSRAAERPGNAAAQERNTVVSRGGRV 147 Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 +T RE E++R+ AQG + +A + S KTV THR N KL + Sbjct: 148 TSLTQREREVLRLLAQGDSNREVAGQLSISAKTVETHRANVMRKLGAS 195 >UniRef50_Q13QW9 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderia RepID=Q13QW9_BURXL Length = 220 Score = 59.8 bits (143), Expect = 5e-08, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 56/157 (35%), Gaps = 18/157 (11%) Query: 50 IYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNS 109 Y +R D V +++S S I L+ +V++ + + ++ Sbjct: 43 AYQRFCALRPDVVVMDVSLPGASG-IEAMRRMLAREPDARVLIFSVHEEAIFVRR-ALDA 100 Query: 110 NIRGVVYAGLSRDIRKELVYVI--NGRFLRKDIK--------------KDKITDREMEII 153 G V + D+ E V I +L DI +++ RE E++ Sbjct: 101 GALGYVTKASAPDVLVEAVRTIARRAGYLSPDISQALALRNAFSEGPPGRQLSAREFEVL 160 Query: 154 RMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 R+ QG SIA S KTV H+ K + Sbjct: 161 RLLVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGAD 197 >UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR family n=29 Tax=Alphaproteobacteria RepID=Q1GIA7_SILST Length = 233 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 14/155 (9%) Query: 48 RLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYY 107 R E + D + ++L+ + + +V++++ S Sbjct: 59 REAIARAEALVPDVILMDLNMPDVGGLSATEI-IQERCPEIRVLILSMHDSPEYITT-AL 116 Query: 108 NSNIRGVVYAGLSRDIRKELV--------YVING--RFLRKDIKK--DKITDREMEIIRM 155 + G V + + K + Y+ G L + + +T RE I+ Sbjct: 117 SHGAVGYVLKDVQPEEIKTAIDAVMRGEQYLCTGAAGSLSPQSQTSREALTGREQTILLE 176 Query: 156 TAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 AQG K +A+ + SV+TV THR+N + KL Sbjct: 177 LAQGKSNKEVAQALDISVRTVETHRKNIKRKLGIS 211 >UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ectothiorhodospiraceae RepID=B8GSX5_THISH Length = 220 Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 19/156 (12%) Query: 52 LSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNI 111 + ++++ D V ++++ + + + K +VL A + W + Sbjct: 44 VEAKRLKPDVVLMDINMPGIGGLVATRRIVEAQPSVKVLVLTAMDEGP--VPRWVLEAGA 101 Query: 112 RGVVYAGLSRDIRKELVY--VINGRFLRKDIKK---------------DKITDREMEIIR 154 G + G + + + R + + + D+++ RE +I+ Sbjct: 102 SGYLTKGCRIEEMIAAIQGAMQGERHISPAVAQRLALGGLAKGQANPFDELSGRERQILL 161 Query: 155 MTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 M QG P++IA N S KTV T++ KL Sbjct: 162 MILQGQTPQAIATALNISPKTVSTYKCRVMGKLGIS 197 >UniRef50_B2JSN3 Two component transcriptional regulator, LuxR family n=28 Tax=Proteobacteria RepID=B2JSN3_BURP8 Length = 210 Score = 58.2 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 16/114 (14%) Query: 91 VLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI--NGRFLRKDI-------- 140 VL+ + EA + G + D+ + + GRF+ + Sbjct: 78 VLVLSIHDEAQVASRALRAGATGYLTKDSDPDVLLAAIRKLADGGRFIDPKLVDAMVFET 137 Query: 141 -KKD-----KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 + D ++DRE ++++M A G IA I S KT+ TH+ KL Sbjct: 138 HRGDMPPHEVLSDREFQVLQMLAAGKSINEIADICALSAKTISTHKMRLMQKLG 191 >UniRef50_C0N6H7 Response regulator receiver domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6H7_9GAMM Length = 214 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 16/154 (10%) Query: 50 IYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNS 109 Y + +I D + +++S + + L+ G +V++ + ++ A Sbjct: 42 AYQTYPEISPDVLVMDMSMPGMGG-LEAVRRILNRWSGAKVIMFSMHENATYAIQSLTAG 100 Query: 110 NIRGVVYAGLSRDIRKELVYVINGR-FLRKDIK--------------KDKITDREMEIIR 154 + V +G + D+ K + V +G+ FL D+ ++T RE E+ R Sbjct: 101 AMGYVAKSGHAEDLVKAVREVKSGKSFLSSDMAHKVALQSLAGDDNPTQRLTSREFEVFR 160 Query: 155 MTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 + A+G IA N KTV ++ + + KL Sbjct: 161 LLAEGKLVDDIASRLNIGQKTVANYQTSLKQKLG 194 >UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=Q2RMH6_MOOTA Length = 221 Score = 57.9 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 23/156 (14%) Query: 55 EKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGV 114 E+ R + V ++L + + E + +VV+++ E L + S RG Sbjct: 45 EESRPEVVVMDLQLGAGRNGVEATRELVEKKPEIKVVILSMYDDEELV-FRALESGARGY 103 Query: 115 VYAGLSRDIRKELVYVI--NGRFLRKDI--------------------KKDKITDREMEI 152 V + + ++ +L I + ++T+RE+E+ Sbjct: 104 VLKRAGIEELTTAIRLVARGEAYLDPQIARRVIEGLQERLPFTRASRPEGPELTERELEV 163 Query: 153 IRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 +R+ A+G+ IAR SVKTV HR N KL Sbjct: 164 LRLAAEGLTNAEIARRLVISVKTVQAHRANIMQKLG 199 >UniRef50_B6A2W0 Two component transcriptional regulator, LuxR family n=47 Tax=Proteobacteria RepID=B6A2W0_RHILW Length = 223 Score = 57.5 bits (137), Expect = 3e-07, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 15/146 (10%) Query: 56 KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVV 115 +I+ V ++++ LS I+ + + +VV+++ S + G V Sbjct: 50 QIQPQVVLMDINMPKLSG-IDAIELFRNEFPEIRVVMLSMHDSREYISSSVM-HGAAGYV 107 Query: 116 YAGLSRDIRKELVYVI--NGRFL-----------RKDIKKDKITDREMEIIRMTAQGMQP 162 +S D + + G + R + D +T RE +I+ + G Sbjct: 108 LKDVSTDEIVAAIETVADGGTYFSSGVFDALMGERAEEGSDPLTPREHDILGLIVAGRSN 167 Query: 163 KSIARIENCSVKTVYTHRRNAEAKLY 188 + IA + S T THR+N + KL Sbjct: 168 REIAEVLGISSATAETHRKNLKKKLG 193 >UniRef50_C7I0E4 Two component transcriptional regulator, LuxR family n=2 Tax=Thiomonas intermedia K12 RepID=C7I0E4_THIIN Length = 226 Score = 57.1 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 30/148 (20%), Positives = 54/148 (36%), Gaps = 28/148 (18%) Query: 62 VFINLSTDSLSEFINRDNEWLSAVKGKQ----VVLIAARKSEALANYWYYNSNIRGVVYA 117 V ++LS + L +K V++++ + A G + Sbjct: 66 VLLDLSMPR-----GNGLDLLKRIKLMHPDLPVLILSMHPEQQFA-LRALRGGAAGYLTK 119 Query: 118 GLSRDIRKELVY--VINGRFLRKDIKKD----------------KITDREMEIIRMTAQG 159 G S D+ E + V GR+L + + +++DREM++ +G Sbjct: 120 GCSPDVLVEAIQKVVHGGRYLTPGVAEQLANYMNEGEAAEEPHARLSDREMQVFMRLVEG 179 Query: 160 MQPKSIARIENCSVKTVYTHRRNAEAKL 187 +A + S KTV TH+ KL Sbjct: 180 KSVNQVADELHISCKTVSTHKTRLMHKL 207 >UniRef50_A4ABN5 Two-component system response regulator n=1 Tax=Congregibacter litoralis KT71 RepID=A4ABN5_9GAMM Length = 222 Score = 57.1 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 17/156 (10%) Query: 53 SLEKIRKDFVFINLSTDSLS--EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSN 110 +++ R +F+++S E I+ W ++V+ S ++ + Sbjct: 59 AIKAKRPGLLFLDVSMPLAGGAEIIHDVRRW---SPDTRIVIFTGVTSPSVLA-GILEAG 114 Query: 111 IRGVVYA-GLSRDIRKELVYVING-RFLRKDI--------KKDKITDREMEIIRMTAQGM 160 + +RD+ +L ++ G R++ ++ + + +T RE +++ M G Sbjct: 115 ADAIFSKLSPARDMLAKLPLILMGERYVAPELTDIIRKGQQGETLTGRERQVLNMIVMGK 174 Query: 161 QPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLV 195 K IA+ N S KTV HR + KL + +L+ Sbjct: 175 SNKEIAQELNISPKTVEKHRGSVMLKLEVHSVAQLM 210 >UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q485W6_COLP3 Length = 215 Score = 57.1 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 73/176 (41%), Gaps = 16/176 (9%) Query: 35 FYKGLSELIVDIDRLIYLSLE-KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLI 93 FY + + D L+ +++ D + +++S +++ I+ + +V+++ Sbjct: 30 FYDDIIIVGSTDDGSDALNKAIELKPDVILMDISMPTMNG-IDATEIITEQLPETKVLIL 88 Query: 94 AARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDI------------- 140 + + + ++ S +I + V NG+ Sbjct: 89 SMHSNPEFVKSAIQAGAVGYLLKDTTSEEIYYAIKAVANGKTHFSSSIAKLLIDNPVNTN 148 Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLV 195 + +K+T RE ++ A+G K IA+I N S +TV HRRN + KL + KL+ Sbjct: 149 ESEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHRRNMKTKLGIHSLAKLI 204 >UniRef50_Q72LA2 Probable two-component response regulator n=1 Tax=Thermus thermophilus HB27 RepID=Q72LA2_THET2 Length = 198 Score = 57.1 bits (136), Expect = 4e-07, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 26/180 (14%) Query: 30 PHDAYFYKGLSELIVDIDRLIYLSLEKIRKDF--------VFINLSTDSLSEFINRDNEW 81 KGLS L+ + + + V ++L+ + E Sbjct: 7 EDHHLVRKGLSLLLEEGGHQVVAEFASAEEALATPWEAEVVLLDLNLPGMG-----GLEA 61 Query: 82 LSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAG-LSRDIRKELVYVING-RFLRKD 139 L + + VL+ + +E + RG + L +D+ + L + G R+L Sbjct: 62 LPHLAQRAKVLVVSMHNEPAYVARAFALGARGYLPKDALDQDLLEALARLSQGLRYLHPS 121 Query: 140 IKK-----------DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 + + + +++RE ++ + AQG +A SVKT T+++ A KL Sbjct: 122 LTEALLEGQAEPGPEVLSERERAVVALLAQGYTLSQVAERLGLSVKTASTYKQRALNKLG 181 >UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y1_9BACT Length = 220 Score = 57.1 bits (136), Expect = 4e-07, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 23/157 (14%) Query: 55 EKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRG- 113 E + D V ++LS L+ + + +++++ ++E + +RG Sbjct: 49 EDLAPDIVILDLSMPELNG-LEAARRIAAHCPRSRMLMLTMHETEQFVRE-ALAAGVRGY 106 Query: 114 VVYAGLSRDIRKELVYVINGRFL--------------------RKDIKKDKITDREMEII 153 ++ RD+ + +I G R+ + +T RE EI+ Sbjct: 107 ILKTDAGRDLANAVDALIRGETFFASRLAATIYAAEFAGMGRRRRSKSQAGLTPREREIL 166 Query: 154 RMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 ++ A+G + + + + N SVKT THR AKL Sbjct: 167 QLLAEGRKNRDVGKALNISVKTAETHRARIMAKLGID 203 >UniRef50_B6BTE7 Two component transcriptional regulator, LuxR family n=2 Tax=Betaproteobacteria RepID=B6BTE7_9PROT Length = 199 Score = 56.7 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 74/151 (49%), Gaps = 6/151 (3%) Query: 45 DIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANY 104 D R+ Y ++ + +++S + +S ++ ++ ++ + +++++++ S+ + Sbjct: 33 DSGRVAYSLAQENSYSLIIMDISMEGMSG-LDALSKIINRLPKQKILILSMHDSDLVIEK 91 Query: 105 WYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKK-----DKITDREMEIIRMTAQG 159 + V + +S ++ + + +++NG + K +++ +RE EI +M A G Sbjct: 92 AKKLGAMGFVTKSDISDNLFQAVEHILNGGNFFPETKASYNQLNQLNEREFEIFKMIASG 151 Query: 160 MQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 K+IA N S KTV ++ + + KL Sbjct: 152 KSIKNIAADMNISQKTVANYQTSIKQKLEID 182 >UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltaproteobacteria RepID=Q2LSF1_SYNAS Length = 217 Score = 56.7 bits (135), Expect = 5e-07, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 70/164 (42%), Gaps = 27/164 (16%) Query: 56 KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWY--YNSNIRG 113 ++ + + +++S ++ I+ + S + G +V+ ++ A ++ + G Sbjct: 46 ELHPEIIIMDISMPDMNG-IDATRKITSDLPGIKVIALS---MHADRHFVIGMLEAGASG 101 Query: 114 VVYAGLSRDIRKELVYVI--NGRFLRKDIK------------------KDKITDREMEII 153 + + + + + N +L I ++T RE E++ Sbjct: 102 YLLKDCAFEELVNAIQTVLSNHTYLSPTIADIVVKNYVHKAAGTSVVVSSELTPRERELL 161 Query: 154 RMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 ++ A+G+ K IA + SVKTV THRRN KL + +L++ Sbjct: 162 QLLAEGLSAKQIAANLHVSVKTVETHRRNITQKLGVGSVAELIK 205 >UniRef50_Q5NZX4 Two-component response regulator n=3 Tax=Betaproteobacteria RepID=Q5NZX4_AZOSE Length = 211 Score = 56.7 bits (135), Expect = 5e-07, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 18/142 (12%) Query: 62 VFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSR 121 + +++S LS ++ S G +++++ LA S G V G R Sbjct: 51 LLLDMSMPGLSG-VDLVRRVKSEWPGLPILVLSMYGETQLAAK-VLQSGASGYVTKGKGR 108 Query: 122 DIRKELVYVI--NGRFLRKDIK--------------KDKITDREMEIIRMTAQGMQPKSI 165 +I + + R++ D+ ++++T RE +I+RM G I Sbjct: 109 EILLSAIRKVASGHRYIDPDLAEKILFDVRMPTASVQEQLTHRESQILRMLQAGKSVTQI 168 Query: 166 ARIENCSVKTVYTHRRNAEAKL 187 A + S KTV TH+ A KL Sbjct: 169 ANELSVSPKTVSTHKIRAMQKL 190 >UniRef50_C1D8M5 Probable transcriptional regulatory, LuxR family n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8M5_LARHH Length = 211 Score = 56.3 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 28/54 (51%) Query: 137 RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 R D ++T+RE E++++ G K IA + S+KTV HR K+ K Sbjct: 140 RIDAALQQLTEREHEVMQLIVAGRLNKQIAEELDISIKTVEVHRSRVLDKMGVK 193 >UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QSJ5_9RHOB Length = 212 Score = 56.3 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 68/172 (39%), Gaps = 22/172 (12%) Query: 45 DIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANY 104 R ++R D + +++S ++ + E + V++++ + Sbjct: 37 TNGREAVKLAHELRPDVLLMDVSMPVMNG-LEAAAEVRKSFPEIAVLILSIYDNSEYVR- 94 Query: 105 WYYNSNIRGVVYAGLS-RDIRKELVYVINGRFLRKDIKKDKI---------------TDR 148 + RG + +S ++ + V +G + + TDR Sbjct: 95 GVVQAGARGYILKDISAPEMITAISSVASGGYYFSSAVGPTLVGTATSAPIEDPYGLTDR 154 Query: 149 EMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK----IYKLVQ 196 E +++ A+G+ K +A+ SV+TV +HR N K+ +K +YK+ Q Sbjct: 155 ERQVLTAIAKGLPNKEVAKSLGISVRTVESHRLNLREKVGNKNAAQLYKVAQ 206 >UniRef50_Q47DK2 Two component transcriptional regulator, LuxR family n=1 Tax=Dechloromonas aromatica RCB RepID=Q47DK2_DECAR Length = 211 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 18/125 (14%) Query: 89 QVVLIAARKSEALANYWYYNSNIRGVVYAG-LSRDIRKELVYVING-RFLRKDIK----- 141 +++++++ + + + G + + ++ + L V++G RFL I+ Sbjct: 79 KILVLSSVDRPEIIEQ-ALAAGVNGYLLKDFVLAELLQALEMVLHGERFLSPKIREMSRF 137 Query: 142 ---------KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKI 191 ++T R+ EI+R+ A G K IAR S KTV HR ++ + Sbjct: 138 SDAEGTSGSGTQLTARQTEILRLVASGRTTKEIARDLGISPKTVEFHRSRLMERIGVHDV 197 Query: 192 YKLVQ 196 L + Sbjct: 198 TGLTR 202 >UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q01NJ8_SOLUE Length = 224 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 6/104 (5%) Query: 94 AARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEII 153 A + A+ S + + + L D R + G + +T RE EI+ Sbjct: 110 ADQLITAIREVQRGGSYLSPRLLSRLVDDFR---LQGRGGGTRSP--RFGTLTKREREIL 164 Query: 154 RMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 +M A+G K IA SVKTV H+ N KL +LVQ Sbjct: 165 KMLAEGKSVKEIAAFFELSVKTVEAHKFNLMRKLDIHNKAQLVQ 208 >UniRef50_Q3JL34 DNA-binding response regulator n=30 Tax=pseudomallei group RepID=Q3JL34_BURP1 Length = 223 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 132 NGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 GR L + D++T RE +++++ A GM+ + IA + N S KTV HR+ KL ++ Sbjct: 145 GGRTLASPV--DELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGAR 201 >UniRef50_Q391P2 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia sp. 383 RepID=Q391P2_BURS3 Length = 216 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 106 YYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSI 165 +S +RGV Y ++++ L+ G+ + ++ RE+EI+RM +G+ + I Sbjct: 115 AIDSVLRGVPY--FPPEVQQNLLRRARGQAAKPTTPLAALSPREIEILRMIGEGLTKQQI 172 Query: 166 ARIENCSVKTVYTHRRNAEAKLYSK 190 A S TV HR N + KL Sbjct: 173 AERIGHSANTVEAHRTNIKRKLGLD 197 >UniRef50_B1ZN14 Two component transcriptional regulator, LuxR family n=3 Tax=Verrucomicrobia RepID=B1ZN14_OPITP Length = 215 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 20/159 (12%) Query: 56 KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVV 115 +++ D + ++ L+ ++ + G +V++ + ++ L + G V Sbjct: 45 EVKPDLLVLDAKLPGLNG-VDLLRRISKKLSGMRVLVFSGHENPVLIRE-MLEAGAHGFV 102 Query: 116 YAGLSRDIRKELVYVI--NGRFLRK---------------DIKKDKITDREMEIIRMTAQ 158 K+ + + G + D +TDRE EI+++ A+ Sbjct: 103 EKTAGLFEFKKGLETVASGGTYFGPAVAALLRNVVANPSASNTADFLTDREREILQLVAE 162 Query: 159 GMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 K IA S+KTV HR N KL + L + Sbjct: 163 SHSTKEIAAKLGISIKTVDNHRTNLMRKLNLHDVASLTR 201 >UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator receiver n=32 Tax=Betaproteobacteria RepID=Q46VQ7_RALEJ Length = 231 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 53/145 (36%), Gaps = 16/145 (11%) Query: 58 RKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYA 117 R D V ++ + I V++++ + A + RG V Sbjct: 68 RPDLVITDIGMRGMGG-IALTAALHEQYPEIAVLVVSMHDNLEYARQ-AVRAGARGYVLK 125 Query: 118 GLSRDIRKELV-YVINGR--FLRKDIKK-----------DKITDREMEIIRMTAQGMQPK 163 D + V+ GR + + + D +T RE +I+ +GM K Sbjct: 126 DAPADELMAAIEAVLAGRVFYSARIARGMAEQMPATGPLDALTRRERDILGCIGRGMANK 185 Query: 164 SIARIENCSVKTVYTHRRNAEAKLY 188 IA SV+TV THR N + KL Sbjct: 186 EIATQLGVSVRTVETHRLNLKRKLG 210 >UniRef50_C4KWB3 DNA-binding response regulator n=35 Tax=pseudomallei group RepID=C4KWB3_BURPS Length = 210 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 15/122 (12%) Query: 83 SAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRD-IRKELVYVINGR------- 134 +V+++ + L + + V+ D + + L V GR Sbjct: 75 DGYPSVRVIVLTMLDNPVLMHT-MRQAGALAVLSKRGDLDELPRALAAVYQGRPFVGTHA 133 Query: 135 ------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 +R +++ RE+E++R+ A GM IA S+KTV TH+ NA KL Sbjct: 134 GAAGGGAMRGTDAPRQLSPREIEVVRLCATGMTMTDIANRYGRSIKTVSTHKHNAMGKLG 193 Query: 189 SK 190 K Sbjct: 194 LK 195 >UniRef50_Q023R1 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023R1_SOLUE Length = 214 Score = 56.3 bits (134), Expect = 6e-07, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 71/170 (41%), Gaps = 19/170 (11%) Query: 45 DIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANY 104 R + + +++ D V +++S L+ I+ E A+ +++ + + Sbjct: 34 KNGRALIETAVRLKPDLVVLDVSMPILNG-IDAAREIKKALPAAKLIFLTMHTNAIYLRK 92 Query: 105 WYYNSNIRGVVYAGLSRDIRKELVYVINGR-FLRKDIKKD----------------KITD 147 + V+ +G + ++ + V G ++ D +D +TD Sbjct: 93 ALHAGASGYVLKSGAAEELLTAIEEVCKGYIYVGPDFGQDVIESIRSTGDSQGGLPALTD 152 Query: 148 REMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 R+ I+++ A+G Q K I I + SV+TV HR ++L + +L + Sbjct: 153 RQRHILQLLAEGKQNKEIGEIAHISVRTVEFHRSRLMSRLGAHSVAELTR 202 >UniRef50_A1WN26 Two component transcriptional regulator, LuxR family n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WN26_VEREI Length = 222 Score = 55.9 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 18/157 (11%) Query: 50 IYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNS 109 Y +++ D V +++ S I+ LS G ++++ + S L N Sbjct: 43 AYAQYKRMHPDVVIMDIMLQGASG-IDASRRILSNHPGAKILIFSMYVSPVLLQQ-ALNV 100 Query: 110 NIRGVVYAGLSRD-IRKELVYVING---------------RFLRKDIKKDKITDREMEII 153 + G V D +R+ + V G R+ R D ++ RE EI Sbjct: 101 GVLGAVGKQCDPDTLREAAIAVAGGDRYLDASMAQSLVFSRYDRGQKIFDALSPREFEIF 160 Query: 154 RMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + G K IA+ N S KTV KL Sbjct: 161 LLLISGAPVKEIAQALNLSAKTVANRASMIRQKLGVS 197 >UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2C4B6_LISGR Length = 214 Score = 55.9 bits (133), Expect = 7e-07, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 21/161 (13%) Query: 50 IYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNS 109 +L +E R D V ++LS + A +V+L+ EA + Sbjct: 38 AFLFIESNRPDIVLMDLSMPPGENGLLTTKRITEAFPETKVILLTMHDEEAYITQ-ALQA 96 Query: 110 NIRGVVYAGLSRDIRKELVYVING--------------------RFLRKDIKKDKITDRE 149 +G + S ++ + + + G R + ++++ RE Sbjct: 97 GAQGYIMKNSSEELLLDAIRSVMGGQIIIDPVFNYSSKQIEQLKRADASENIIERLSKRE 156 Query: 150 MEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 EI+ + A G K IA S KTV H+ + KL K Sbjct: 157 KEILPLIALGYGNKEIAERLFISAKTVEVHKSHIMKKLEMK 197 >UniRef50_Q46SR4 Two component transcriptional regulator, LuxR family n=14 Tax=Burkholderiales RepID=Q46SR4_RALEJ Length = 232 Score = 55.9 bits (133), Expect = 8e-07, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 14/117 (11%) Query: 87 GKQVVLIAARKSEALANYWYYNSNIRGVVYA-GLSRDIRKELVYVINGRFLRKDI----- 140 G ++++I+ + A + G V +I + + V+ G + D+ Sbjct: 100 GVRILVISGQDQNTFAPR-ARQAGANGYVSKTQELPEIVRCVESVLAGYSVMPDVDGGRA 158 Query: 141 -------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + ++D+E+ I++M A+GM K I + S KTV TH+ KL ++ Sbjct: 159 DGVDETRRLGSLSDKELVIMQMLAKGMSNKQIGEVLFISNKTVSTHKTRIMEKLGAR 215 >UniRef50_D0LYS4 Two component transcriptional regulator, LuxR family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYS4_HALO1 Length = 212 Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 119 LSRDIRKELVYVINGRFLRKDIKKD---KITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 R + ++ R +R D +K ++ RE +++ AQGM + IA + SVKT Sbjct: 121 GQRYLPDKIATSFAERHIRPDAEKPLVETLSKREFQVMTHLAQGMTNREIAGVLQISVKT 180 Query: 176 VYTHRRNAEAKLY 188 V THR + KL Sbjct: 181 VDTHRSHVLKKLE 193 >UniRef50_A4TJY3 Two-component response regulator n=27 Tax=Yersinia RepID=A4TJY3_YERPP Length = 210 Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 19/146 (13%) Query: 60 DFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAG- 118 D V I++ + F GK + ++A+ + A + G + Sbjct: 50 DLVIIDIELPNFDGFSLLKKLQQRGFTGKSL-FLSAKNEQVFAVR-ALQAGANGFISKNK 107 Query: 119 LSRDIRKELVYVINGRFLRKDI----------------KKDKITDREMEIIRMTAQGMQP 162 +I V+ G + +++RE+ ++R G+ Sbjct: 108 DISEILFAAQNVLRGYSFFPSETLTQLAGQPSSHDPVNRARLLSEREINVLRYLVNGLSN 167 Query: 163 KSIARIENCSVKTVYTHRRNAEAKLY 188 K IA S KTV T++ KL Sbjct: 168 KQIADEMFISNKTVSTYKTRILTKLG 193 >UniRef50_B5JQZ3 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQZ3_9BACT Length = 222 Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 140 IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 KK+++++RE E+++ A+G K IA + SVKT+ HR N KL Sbjct: 142 KKKNRLSNREREVLQAVAEGFSTKQIAEMLEVSVKTIEAHRANLMKKL 189 >UniRef50_A6CG81 DNA-binding response regulator, LuxR family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CG81_9PLAN Length = 222 Score = 55.2 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 8/117 (6%) Query: 85 VKGKQVVLIAARKSEALANYWYYN----SNIRGVVYAGLSRDIRKELVYVINGRFLRKDI 140 V G V +A R +A A + + + G+ DI+ I + L + Sbjct: 94 VSGYGDVPMAVRAMKAGAIDFLEKPVSDQVLLDYIQKGIETDIKN-KQNRIQNQDLME-- 150 Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK-IYKLVQ 196 +K+ +T RE E++ G + IA N S KTV HR K+ +K + KL+Q Sbjct: 151 RKELLTRREREVMEYVVAGFSSREIAGTLNVSFKTVEAHRAKIMKKMQAKSVPKLIQ 207 >UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepID=Q2W7M4_MAGSA Length = 209 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 7/76 (9%) Query: 112 RGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENC 171 + + GLS D+ KE + D+ +T RE E++++ A+G + + IA Sbjct: 122 KTYLGPGLSEDLVKEYLE-------GSDMGGGSLTAREREVLQLIARGHKNREIADELGI 174 Query: 172 SVKTVYTHRRNAEAKL 187 ++KTV THR KL Sbjct: 175 AIKTVETHRTKIMQKL 190 >UniRef50_A0NNP3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNP3_9RHOB Length = 205 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 66/172 (38%), Gaps = 22/172 (12%) Query: 45 DIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANY 104 R +R D + +++S ++ + + + V++++ + Sbjct: 30 TNGREALTLAHDLRPDVLLMDVSMPVMNG-LEAATQMRKLLPEIAVLILSVYDNPEYVR- 87 Query: 105 WYYNSNIRGVVYAGLSR-DIRKELVYVINGRFLRKDIKKDKI---------------TDR 148 + RG + +S ++ + V +G + + TDR Sbjct: 88 GVVQAGARGYILKDISAAEMITAITSVASGGYYFSSAVGPTLVGAGTSAPVEDPYGLTDR 147 Query: 149 EMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK----IYKLVQ 196 E +++ A+G K +A+ SV+TV +HR N K+ +K +YK+ Q Sbjct: 148 ERQVLTAIARGQPNKEVAKELGISVRTVESHRLNLREKVGNKNAAQLYKVAQ 199 >UniRef50_C7LUF3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LUF3_DESBD Length = 203 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 16/153 (10%) Query: 48 RLIYLSLEKIRKDFVFINLSTDSLS--EFINRDNEWLSAVKGKQVVLIAARKSEALANYW 105 L LE R D V +++S S +F+ E G V++++ A Sbjct: 36 HEARLVLEDARFDLVILDISLPDGSGLDFLEYAQE---HSPGLPVIMLSMHHEIEYA-QR 91 Query: 106 YYNSNIRGVVYAGLSRDIRKELVYVI--NGRFLRKDI--------KKDKITDREMEIIRM 155 + RG + + + +E + I G ++ + D ++ +E ++ R Sbjct: 92 CLSLGARGYLSKNSAPEELEEAMISILDGGIYVNPSLLDSRRSTSAMDTLSRQERDVARR 151 Query: 156 TAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 A+G +IA+ SVKT T+R A KL Sbjct: 152 LAKGETMTAIAQAMGVSVKTASTYRTRAMRKLG 184 >UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=Bacteria RepID=B4VFW8_9ACTO Length = 216 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 23/152 (15%) Query: 55 EKIRKDFVFINLSTDSLS--EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIR 112 E++R D + +++ E + R E + + VLI +E + Sbjct: 50 EELRPDVILMDIKMPGTDGIEALRRLRELANPAR----VLIVTSFTEQRTVVPALRAGAA 105 Query: 113 GVVYAGLSRDIRKELVYVINGRFLR-----------------KDIKKDKITDREMEIIRM 155 G VY + D + ++ + + +TDRE E++ Sbjct: 106 GYVYKDIDPDALAGAIRSVHAGHVLLQPEVAVALLTQDDQGPSSSRGGALTDREREVLSH 165 Query: 156 TAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 A G + IAR S KTV TH N KL Sbjct: 166 IADGRSNREIARALVLSEKTVKTHVSNILMKL 197 >UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteria RepID=C1F9F6_ACIC5 Length = 213 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 14/163 (8%) Query: 40 SELIVD-IDRLIYLSLEKIRK-DFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARK 97 E+I + D + ++L + + D ++L ++ + G ++V++ Sbjct: 35 FEVIAEAGDGVEAIALHREHQPDITIMDLRLPRMNG-VEAITRIREESPGARIVVLTTFD 93 Query: 98 SEALANYWYYNSNIRGVVYAGLSRDIRKELVY----------VINGRFLRKDIKKDKITD 147 + Y + RG + G+ D + + L + + ++T Sbjct: 94 GDEDI-YRALQAGARGYLLKGMDADDLTAAIRSVHAGKSRIPTVVAERLAERMSGSELTA 152 Query: 148 REMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 RE++++R+ QG + IA + S TV TH N +KL Sbjct: 153 RELDVLRLIVQGRSNREIAADLHISEATVKTHINNLLSKLGVS 195 >UniRef50_UPI00017452CB response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017452CB Length = 235 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 33/199 (16%) Query: 20 QNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLST 68 + K + GL +L+ + LE+ + D + +++S Sbjct: 15 HSDKKKIAFVDDHTMLRDGLQKLVESQPDLCCYWTASNTQDALQQLEQGKPDMLAVDISL 74 Query: 69 DSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELV 128 + + L+ +++I+ E+ + RG V + + Sbjct: 75 PG-RNGLELIKDALALHPDLPILVISMHD-ESFYAQRVLKAGARGYVMKDAESTTLLQAI 132 Query: 129 Y--VINGRFLRKDI------------------KKDKITDREMEIIRMTAQGMQPKSIARI 168 + GR++ + +++DRE E+ ++ ++G + I Sbjct: 133 RNVLEGGRYVSPAMSAQIMEAFSGRGAARPVDGVQRLSDREFEVFQLISEGKSTQQIGDA 192 Query: 169 ENCSVKTVYTHRRNAEAKL 187 N SVKTV HR + KL Sbjct: 193 LNISVKTVEVHRAHIREKL 211 >UniRef50_A7LKW1 Putative two component transcriptional regulator n=1 Tax=uncultured Methylophaga sp. RepID=A7LKW1_9GAMM Length = 217 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 30/160 (18%) Query: 51 YLSLEKIRKDFVFINLSTDS------LSEFINRDNEWLSAVKGKQVVLIAARKSEALANY 104 Y + ++ I+L+ + NRD K ++++ + + LA Sbjct: 43 YQAFIALQPKVCIIDLTMPGTGGLECVRRICNRD-------KDARILVCSMHEETTLAMR 95 Query: 105 WYYNSNIRGVVYAGLSRDIRKELVYVINGR----------------FLRKDIKKDKITDR 148 G + S D+ E V + + ++ D K D ++ + Sbjct: 96 -ALELGAIGYITKSCSSDVLIEAVKSVAEKRHYLGAEVARSIAMEKLIKTDQKIDSLSHQ 154 Query: 149 EMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 E + RM A+GM + I++ + KTV ++ N KL Sbjct: 155 EFAVFRMVAEGMSIEEISKSLTLAPKTVSNYKTNMMRKLG 194 >UniRef50_Q313W8 Two component transcriptional regulator, LuxR family n=3 Tax=Proteobacteria RepID=Q313W8_DESDG Length = 223 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 67/198 (33%), Gaps = 34/198 (17%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEW-- 81 I + +GL L+ + LI + + ++L + E + D Sbjct: 5 YSLIIAEDHTLLREGLKSLLQSVPHLI--VTGEASDGQMAVDLCDRNQPELVLMDISMPR 62 Query: 82 LSAVKGKQV---------VLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 + V+ ++ VL+ Y + G V S D V + Sbjct: 63 MDGVQATRLIKKRHPEVRVLVLTVHGAGEYVYAALAAGADGYVLKDASNDEFILAVESVL 122 Query: 133 GR--FLRK------------DIKK-------DKITDREMEIIRMTAQGMQPKSIARIENC 171 G +L D + + +T RE EI ++ A+G + + IA + Sbjct: 123 GGKIYLSPGVSDAVVKGYLNDARGQSVSSSWETLTPREQEIFQLVAEGYKNREIAEMLVV 182 Query: 172 SVKTVYTHRRNAEAKLYS 189 SVKTV HR N KL Sbjct: 183 SVKTVEKHRSNLMQKLGV 200 >UniRef50_A4W740 Two component transcriptional regulator, LuxR family n=73 Tax=Gammaproteobacteria RepID=A4W740_ENT38 Length = 210 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 15/115 (13%) Query: 87 GKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN--GRFLRKDIKK-- 142 G + ++++ + A ++ G + + + V + G +L D K Sbjct: 76 GFRAIILSIYDTPAFV-QSALDAGASGYLTKRCGPEELVQAVRSVGMGGHYLCADAVKAL 134 Query: 143 ----------DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 D +T RE E+ + +G K+IA S KTV+ HR N KL Sbjct: 135 RGGQPVSKVLDVLTPREREVFDLLVKGESVKAIAFTLELSHKTVHVHRANVLGKL 189 >UniRef50_Q2W8X3 Response regulator n=2 Tax=Magnetospirillum RepID=Q2W8X3_MAGSA Length = 216 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 34/67 (50%) Query: 124 RKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNA 183 R E +V R + + + +T RE E++ + AQG+ K+ A+ SV+TV HR Sbjct: 123 RSERAWVERRRLDGIEARANSLTPREYEVMVLVAQGLSNKAAAQELGISVRTVEIHRARV 182 Query: 184 EAKLYSK 190 K+ + Sbjct: 183 MEKMAAD 189 >UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAQ5_9BACT Length = 229 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 29/198 (14%) Query: 22 RSDKYIWSPHDAYFYKGLSELI-VDIDRLIYLSLEKIRKDFVFI-----NLSTDSLSEFI 75 ++ K + +GL ++I +ID + E + + +L ++ Sbjct: 11 KATKILLVDDHPMMREGLRQIIGNEIDLAVCGEAENAFQALELVKSEKPDLVLADITLPD 70 Query: 76 NRDNEWLSAVKGKQV---VLIAARKSEALANYWYYNSNIRGVVYA-GLSRDIRKELVYVI 131 E L ++ + VL+ + EAL + RG + + I + + +V+ Sbjct: 71 KNGLELLKDLQAQHPKLPVLVISMHDEALYAERVLRAGGRGYIMKHEGGKKIMQAIRHVL 130 Query: 132 NGRFL-------------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCS 172 +G+ + +TDRE E+ R+ +G+ K IA + S Sbjct: 131 SGQIFVSEKMSARILELFSGHGTQAASSPIENLTDREFEVFRLIGEGLSTKEIAANMHVS 190 Query: 173 VKTVYTHRRNAEAKLYSK 190 KTV HR N + KL K Sbjct: 191 AKTVEVHRMNIKTKLGLK 208 >UniRef50_C6C961 Two component transcriptional regulator, LuxR family n=24 Tax=Gammaproteobacteria RepID=C6C961_DICDC Length = 211 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 15/113 (13%) Query: 89 QVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI--NGRFLRKD------- 139 + ++++ + A ++ G + + + V + G +L D Sbjct: 79 RAIILSIYDTAAFV-QSALDAGACGYLTKRCGPEELVQAVRAVHAGGSYLCADAMRALRH 137 Query: 140 -----IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 + +T RE EI + G+ K+IA + S KTV+ HR N KL Sbjct: 138 SRQRPKALEALTPREREIFDLLVNGLSVKTIAEQLDLSHKTVHVHRANVLDKL 190 >UniRef50_A6AS40 Two component response regulator n=5 Tax=Vibrio harveyi group RepID=A6AS40_VIBHA Length = 198 Score = 54.4 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 130 VINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS 189 + NG L +T RE E++ + +GM+ + +A + S++T+ HR N KL + Sbjct: 125 LKNGEKLGAKQVLQSLTKREREVLGLVVKGMKNQEMADLLCVSLRTIEVHRSNVMKKLEA 184 Query: 190 K 190 + Sbjct: 185 E 185 >UniRef50_C6DD36 Two component transcriptional regulator, LuxR family n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PC1 RepID=C6DD36_PECCP Length = 218 Score = 54.0 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 15/113 (13%) Query: 89 QVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI--NGRFLRKD------- 139 + ++++ + A ++ G + + + V V+ G +L D Sbjct: 86 RAIILSIYDTTAFV-QSALDAGAGGYLTKRCGPEELVQAVRVVSSGGIYLCADALHAIRH 144 Query: 140 -----IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 + +T RE EI + G+ KSIA S KTV+ HR N +KL Sbjct: 145 QQQPPKELLALTPREREIFSLLINGISVKSIAEQLELSHKTVHVHRANILSKL 197 >UniRef50_Q6MJE1 Two-component response regulator homolog n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJE1_BDEBA Length = 226 Score = 54.0 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 12/108 (11%) Query: 90 VVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--VINGRFLRKDIKK----- 142 +++ +E LA Y ++ ++ + D+ ++ V + + ++ ++K Sbjct: 103 MLVTQCEDAETLAQYQRL--GVKVMLSKVSAMDVLEDAVKSLLEDKDYVCPALEKVMGEP 160 Query: 143 ---DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 + +T RE+E++RM AQG K +A CS T+ TH+ N KL Sbjct: 161 RLTNVLTPRELEVVRMIAQGKTNKEVAACLECSEHTIKTHKTNVMRKL 208 >UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=Q1J0X7_DEIGD Length = 228 Score = 54.0 bits (128), Expect = 3e-06, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 31/207 (14%) Query: 12 EVKNHMECQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKD 60 + + + R + KG EL+ + L ++ D Sbjct: 3 DATDALPAHTRPITLLLVDDHPVVRKGTRELLEGEADLRVVGEAESGEEAILKARQLMPD 62 Query: 61 FVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS 120 + +++S ++ I + G ++++ + +A + + G + S Sbjct: 63 VILMDVSMPGMNG-IEATRAIKAERPGVGILVLTSYDDDAYV-FALLEAGAAGYLLKNAS 120 Query: 121 RDIRKELVYVINGR------------------FLRKDIKKDKITDREMEIIRMTAQGMQP 162 D V + +D ++ RE+E++R+ A G Sbjct: 121 EDELLGAVRAVAAGESALHPAVARKVLERFSTHQTPTPPEDALSPRELEVLRVAATGRTN 180 Query: 163 KSIARIENCSVKTVYTHRRNAEAKLYS 189 K IAR + S +TV H N +KL Sbjct: 181 KEIARDLDISPRTVQVHLANIFSKLGV 207 >UniRef50_B4DAD9 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAD9_9BACT Length = 237 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 22/167 (13%) Query: 42 LIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEAL 101 + EK D V ++L+ S + L A++ VL+ + E L Sbjct: 45 GLATNAGDAVQLFEKEHPDLVVMDLNLPGRSGLDLVKD--LLALEPSARVLVCSMHDEML 102 Query: 102 ANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKK------------------- 142 + +G V S + + + G + + Sbjct: 103 YAERSLRAGAKGYVTKDCSAALLLTAIRRVLGGNIHVSERLAVRVLEAFAGARPRGSHSP 162 Query: 143 -DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 +K++DRE E+ + +G K I N S KTV HR + + K+ Sbjct: 163 LEKLSDREFEVFVLFGEGKTAKEIGAKLNLSPKTVSVHRDHIKQKME 209 >UniRef50_Q3BU15 Two-component system response regulator, LuxR family n=12 Tax=Xanthomonadaceae RepID=Q3BU15_XANC5 Length = 221 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 34/150 (22%), Positives = 53/150 (35%), Gaps = 23/150 (15%) Query: 58 RKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYA 117 R D V ++LS ++ + L A VV+++ + G V Sbjct: 57 RPDLVLMDLSLPG-RSGLDAMTDVLRAAPRTHVVMMSMHDDPVHVRD-ALDRGAVGFVVK 114 Query: 118 G-------------------LSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQ 158 LS I +++ + GR K + ++ R+ EI+R + Sbjct: 115 DAAPLELELALRAAAAGQVFLSPQISSKMIAPMLGR--EKPVGIAALSPRQREILREIGR 172 Query: 159 GMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 G K IA SVKTV THR L Sbjct: 173 GQSNKEIAADLGISVKTVETHRARMMESLG 202 >UniRef50_C7RKP7 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RKP7_9PROT Length = 216 Score = 53.6 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 30/163 (18%) Query: 50 IYLSLEKIRKDFVFINLS------TDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALAN 103 Y + +R D V ++LS +++ +RD + +++ S L Sbjct: 45 AYAQYQTLRPDTVVMDLSMEGFGGIEAIRRIRSRDPQ-------AAILVYTVHNSRVLLE 97 Query: 104 YWYYNSNIRGVVYAGLSRDIRKELVYVINGR--FLRKDI--------------KKDKITD 147 + G V G D + + I R F+ D+ D++T Sbjct: 98 R-ALEAGALGFVTKGSDIDTLLQAIKRIASRESFVSPDMLPALLDRHFPAGGVSFDRLTQ 156 Query: 148 REMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 RE ++ ++ ++G A I N S KTV H AKL Sbjct: 157 REFQVFKLLSEGHALPECADILNLSSKTVSNHFTQIRAKLGVD 199 >UniRef50_Q2W0G1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W0G1_MAGSA Length = 225 Score = 53.6 bits (127), Expect = 4e-06, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 27/47 (57%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 ++ RE +++++ A+G + +A I SVKTV HR N KL + Sbjct: 163 PLSGRERQVLKLLAEGYTNQKVAGILGISVKTVDRHRENIMNKLGVR 209 >UniRef50_B4D2X8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2X8_9BACT Length = 242 Score = 53.6 bits (127), Expect = 4e-06, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 31/49 (63%) Query: 142 KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 DK++DRE E++R+ +G + IA + SVKTV THR + + KL K Sbjct: 170 VDKLSDREFEVLRLLGRGFGSREIAEELSLSVKTVETHRAHIKEKLGFK 218 >UniRef50_Q7NTU2 Probable transcriptional regulatory, LuxR family n=1 Tax=Chromobacterium violaceum RepID=Q7NTU2_CHRVO Length = 206 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 25/46 (54%) Query: 145 ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 +T+RE E++++ G K IA + S+KTV HR K+ K Sbjct: 142 LTEREREVMQLILAGKLNKQIAEELSISMKTVEVHRSRVFEKMGVK 187 >UniRef50_Q2BNZ3 Transcriptional regulator, LuxR family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BNZ3_9GAMM Length = 223 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 26/161 (16%) Query: 42 LIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEAL 101 +I+D++ + E++ + N +++ I+ D K K +VL A Sbjct: 54 VIMDLNMPSDANTEEMSNNL---NGGLEAIRRIISHDP------KAKVLVLTAMEIDPFP 104 Query: 102 ANYWYYNSNIRGVVYAGLSRDIRKELVYVINGR--FLRKDIKKD-------------KIT 146 A+ N+ +G + + D E V I+ ++ ++I+ +T Sbjct: 105 AH--VVNAGAKGFLTKRCAPDELLEAVKAIHAGEEYITEEIRLRITEGGSADGASLASLT 162 Query: 147 DREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 RE++I + A+G +A S KTV+ HR N KL Sbjct: 163 KRELQIFSLLAEGRTVSIVAEEMFLSPKTVHAHRTNIFRKL 203 >UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacillales RepID=C0ZDE8_BREBN Length = 214 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 17/162 (10%) Query: 52 LSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNI 111 L +++ D V ++LS + + E + ++V++ E Sbjct: 41 LKANQLKPDVVLMDLSLPNGLDGFTASKEIRKSNPLVKIVILTMHDEEIFVQEAITVGAH 100 Query: 112 RGVVYAGLSRDIRKELVYVINGR--------------FLRKDIKK--DKITDREMEIIRM 155 ++ + + +V V G+ +LR D K +T RE E++R+ Sbjct: 101 GYILKNSHGELLFQAIVEVYRGKCFYKTSVSQEIINLWLRSDAKTLPSVLTLREKELVRL 160 Query: 156 TAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 G K +A SVKTV H+ N KL ++L+Q Sbjct: 161 IVLGYSNKEMADKLLISVKTVENHKTNIMQKLGLDSKHQLIQ 202 >UniRef50_B1KE04 Two component transcriptional regulator, LuxR family n=2 Tax=Alteromonadales RepID=B1KE04_SHEWM Length = 206 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 71/186 (38%), Gaps = 27/186 (14%) Query: 30 PHDAYFYKGLSELIVDID-----------RLIYLSLEKIRKDFVFINLSTDSLSEFINRD 78 F +GL + D + + + D V +++S ++ ++ Sbjct: 7 DDHPIFREGLIARLSMDDDFVIVGQAANGKEALEKMPNLMPDIVLMDISMPEMNG-MDAA 65 Query: 79 NEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI--NGRFL 136 + ++++++ + N +RG +S + VI G + Sbjct: 66 EIFKDKFPEIKILILSMHDDKEYV-LSVLNRGVRGYALKDISAAEMFYALRVIHNGGIYY 124 Query: 137 RKDI------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAE 184 + I K +T RE ++R+ A G+ K +AR + SV+T+ THRRN + Sbjct: 125 SRAISDLLVQSSQEPDKNTVLTTREQTVLRLLASGLNNKELARELDISVRTIETHRRNIK 184 Query: 185 AKLYSK 190 KL K Sbjct: 185 DKLAIK 190 >UniRef50_Q11XC0 Fimbrial Z protein; probable signal transducer n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11XC0_CYTH3 Length = 212 Score = 53.2 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 32/65 (49%) Query: 126 ELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEA 185 ++ V+ FL +DRE+E++R +G + IA I S KT+ THRRN Sbjct: 130 DVTQVLLKGFLANQTSDSIFSDRELEVLRYICKGRSNEQIADILFISEKTIATHRRNIMK 189 Query: 186 KLYSK 190 K K Sbjct: 190 KAGVK 194 >UniRef50_Q2YB36 Two component transcriptional regulator, LuxR family n=3 Tax=Betaproteobacteria RepID=Q2YB36_NITMU Length = 217 Score = 53.2 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 65/167 (38%), Gaps = 25/167 (14%) Query: 45 DIDRLIYLSLEKIRKDFVFINLSTDSLSEF--INRDNEWLSAVKGKQVVLIAARKSEALA 102 D D + D V +++S +LS F I + L A+ VL+ + E + Sbjct: 39 DGDEALATLKAGHHADIVLMDVSLKTLSGFEVIKSIHTLLPALP----VLVVSMHDEGVY 94 Query: 103 NYWYYNSNIRGVVYAG-------------------LSRDIRKELVYVINGRFLRKDIKKD 143 + RG V LS+ + +L+ + G + + Sbjct: 95 AERALRAGARGYVMKQEPGEVLVTAIHEVLKGNIYLSKPMHAKLLNRVAGGNSEPEPLIN 154 Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 +T E E++ + G + IA++ + S+KT+ THR N KL K Sbjct: 155 SLTPSEFEVLHLIGSGHSSQEIAKLLSRSIKTIETHRFNIRTKLNLK 201 >UniRef50_B9Z8S5 Two component transcriptional regulator, LuxR family n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z8S5_9NEIS Length = 208 Score = 53.2 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%) Query: 123 IRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRN 182 +R + GR R + +T+RE E++++ G K IA S+KTV HR Sbjct: 120 LRDQQERDRFGRLSRLNQSLALLTEREREVMQLILAGKLNKQIADELAISMKTVEVHRSR 179 Query: 183 AEAKLYSK 190 K+ K Sbjct: 180 VFDKMGVK 187 >UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y661_9BACT Length = 216 Score = 53.2 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 39/206 (18%), Positives = 85/206 (41%), Gaps = 34/206 (16%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDIDRL-----------IYLSLEKIRKDFVFINLSTDSL 71 S + + + F +GL EL+ D + + E+++ D ++++ L Sbjct: 2 SIRVLLADDHEMFLEGLRELLGKADGIELAGLARDGAEAVAAAERLQPDVALMDMTMPRL 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS-RDIRKELVYV 130 + I + + G +V++++ + L + RG V S +++ + V Sbjct: 62 NG-IQATQKIAAGSPGTKVLVLSMHGDKNLIVE-SLKAGARGYVLKECSSQELCLAIQTV 119 Query: 131 INGRF-LRKDIKKD------------------KITDREMEIIRMTAQGMQPKSIARIENC 171 NG++ L I +++RE++++++ +G K IA + Sbjct: 120 ANGQYYLTPAILSTLIGDYLRLTENEEQGSDCPLSERELDVLKLLVKGCNAKQIAEQLSI 179 Query: 172 SVKTVYTHRRNAEAKLY-SKIYKLVQ 196 S TV THRR+ KL + + +L + Sbjct: 180 SKNTVDTHRRHILDKLGCNSMAELTR 205 >UniRef50_Q0A525 Two component transcriptional regulator, LuxR family n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A525_ALHEH Length = 214 Score = 53.2 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 14/150 (9%) Query: 50 IYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNS 109 Y + + R D V +++S +S + +V++ + + A + Sbjct: 47 AYRACARERFDVVVMDISLPGISG-LETLARLQRRAPEIRVLIFSMHEEPVFAEQ-ALSG 104 Query: 110 NIRGVVYAGLSRDIRKELVYVI--NGRFLRKDIKKD----------KITDREMEIIRMTA 157 G + + ++ E V I G +L D++ ++ RE EI R+ A Sbjct: 105 GAAGYITKSSAPEVLVEAVQRIAAGGHYLGPDVRCRHGDADTAGLQSLSAREFEIFRLLA 164 Query: 158 QGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 +G IAR+ N S KTV + KL Sbjct: 165 EGCGSAEIARLLNISYKTVANYGSGIREKL 194 >UniRef50_A0JU95 Transcriptional regulator, LuxR family n=1 Tax=Arthrobacter sp. FB24 RepID=A0JU95_ARTS2 Length = 910 Score = 53.2 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%) Query: 116 YAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 A ++ LV + L ++T+RE ++ RM +QG+ K +A S++T Sbjct: 825 SARAAQHRLDRLVETLPVLPLMPHTVGPELTERERQVARMASQGLSNKEVANRLQLSIRT 884 Query: 176 VYTHRRNAEAKLYSK 190 V H K+ Sbjct: 885 VEGHLYQIFTKMGIS 899 >UniRef50_D0IVR3 Two component transcriptional regulator, LuxR n=90 Tax=Bacteria RepID=D0IVR3_COMTE Length = 217 Score = 53.2 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 22/44 (50%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 K+T RE +++ G K IA S+KTV HR N KL Sbjct: 145 KLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKL 188 >UniRef50_C6VVK2 Two component transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VVK2_DYAFD Length = 212 Score = 53.2 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 7/111 (6%) Query: 87 GKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKIT 146 G L+ + L I V+ G + + V G F +K +T Sbjct: 101 GMHGYLLKDSTTAVLLK------GINTVLSGGTYFESLTKKVNGGAGDFGDTFTQKLNLT 154 Query: 147 DREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 RE+EII +G + I+ N S TV THR+N KL + + +L++ Sbjct: 155 FREIEIIGFIKKGYTNEQISAALNLSFFTVKTHRKNIHFKLGINNVAELIE 205 >UniRef50_D0IY57 Two component transcriptional regulator, LuxR n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0IY57_COMTE Length = 201 Score = 53.2 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 19/159 (11%) Query: 53 SLEKIRKDFVFINLSTDS--LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSN 110 +L K D V ++ + I L +G +V+++ + + Y + Sbjct: 30 ALTKSLPDIVIVDYHMPDSQYGDGIKFIGYLLRQFEGLKVIVLTMLSNPMIVKA-LYKAG 88 Query: 111 IRGVVYAGLSRDIRKELVYVIN-GRFLRK---------------DIKKDKITDREMEIIR 154 ++GVV+ + + +++ G + +T RE E++R Sbjct: 89 VKGVVFKQDDPSEVFKAIRLVSLGNIYTPPSFLETNVSLQHQMLQERFKSLTPREFEVLR 148 Query: 155 MTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYK 193 +G IA N S+KTV + + A KL +K + Sbjct: 149 YYVRGGSLAEIAERLNRSIKTVSSQKMTAMRKLEAKSNQ 187 >UniRef50_B4CVL8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVL8_9BACT Length = 217 Score = 53.2 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 10/85 (11%) Query: 103 NYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQP 162 + Y+ + + +++A K+ ++GR +TDRE EI+++ A+G Sbjct: 123 HKPYFTTQVGEILFAKFLHGKPKDEEQTVDGR----------LTDREREIVQLLAEGASN 172 Query: 163 KSIARIENCSVKTVYTHRRNAEAKL 187 K +A SVKTV THR KL Sbjct: 173 KEVADSLGISVKTVETHRAAIMKKL 197 >UniRef50_B2JQB0 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JQB0_BURP8 Length = 194 Score = 53.2 bits (126), Expect = 5e-06, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 7/132 (5%) Query: 61 FVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS 120 ++L + I+ + SA G ++V+ ++ E L N+ G V Sbjct: 46 LAIVDLRLPD-GDGIDLIAQLSSAKPGLRIVVFSSVD-ERLNGAHVRNAGAHGFVSKLRG 103 Query: 121 RDIRKELVYVINGRFL-----RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 D + ++ + + ++ RE ++ +G IA N S KT Sbjct: 104 PDELLASLGLVMIGYTCFASELVEPAGVALSRRETSVLHRLIRGQSNVEIATSLNLSPKT 163 Query: 176 VYTHRRNAEAKL 187 V T++ KL Sbjct: 164 VSTYKMRLMQKL 175 >UniRef50_Q0EZ33 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ33_9PROT Length = 217 Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 22/161 (13%) Query: 55 EKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGV 114 EK D V +++S +S + L A ++++++ + RG Sbjct: 49 EKWLPDIVIMDISLPDISG-LEVMRRILLAHPEARILMLSMHS--GMVAERAMQMGARGF 105 Query: 115 VYAGLSRDIRKELVY-VINGRFLRKDIKK-----------------DKITDREMEIIRMT 156 V + ++ V+ GR D +T RE+E+ + Sbjct: 106 VCKRSGARLLISAIHEVMAGRRYLDDETGVQLPLLHSASETLKPLPSSLTRRELEVCLLL 165 Query: 157 AQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS-KIYKLVQ 196 G IA + S KTVY+HR++ KL + +LVQ Sbjct: 166 TDGRSVSDIAAALHLSEKTVYSHRQHIMEKLGVATMAELVQ 206 >UniRef50_C4KD43 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4KD43_THASP Length = 224 Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 25/51 (49%) Query: 140 IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 ++ D+++ RE E++ + G K IA + KTV HR K+ + Sbjct: 147 MRLDRLSAREREVMELVVLGRLNKQIAAELGIAEKTVKIHRGRVMEKMEVQ 197 >UniRef50_Q47I89 Two component transcriptional regulator, LuxR family n=3 Tax=Betaproteobacteria RepID=Q47I89_DECAR Length = 203 Score = 52.8 bits (125), Expect = 7e-06, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 10/95 (10%) Query: 106 YYNSNIRGVVYAGLSRD-IRKELVYVINGRFLRKDIKKDK---------ITDREMEIIRM 155 + SN + + D + + + N + L +D K +T RE E++ + Sbjct: 96 AFKSNAIDFLEKPIDHDKMLEAIEQAFNSQSLMQDRKSASEKANYLLGQLTPREQEVMNL 155 Query: 156 TAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 G + IA SV+TV H+ + +KL Sbjct: 156 VVGGYHNREIAEKLGISVRTVEVHKAHVMSKLDVD 190 >UniRef50_A8AF51 Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC BAA-895 RepID=A8AF51_CITK8 Length = 174 Score = 52.5 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 40/99 (40%) Query: 90 VVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDRE 149 +VLI +L N+ + D+ + + R ++ + K+T RE Sbjct: 59 LVLIVKSDLASLCRELLDLENVLILTENASCSDLSAIFKHPLTAREYQRLYTRRKLTTRE 118 Query: 150 MEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 +++ + K IA + N KT +THR + KL Sbjct: 119 QQVLALMIANHNNKQIAELLNIDYKTAHTHRASIMRKLG 157 >UniRef50_P0AEL9 Fimbriae Z protein n=80 Tax=Enterobacteriaceae RepID=FIMZ_ECO57 Length = 210 Score = 52.5 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 114 VVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 ++ +G + + L Y+ + + +++RE+ I+R G+ K IA S Sbjct: 119 MILSGYTFFPSETLNYIKSNKCSTNSSTVTVLSNREVTILRYLVSGLSNKEIADKLLLSN 178 Query: 174 KTVYTHRRNAEAKLY-SKIYKLV 195 KTV H+ N KL I +L+ Sbjct: 179 KTVSAHKSNIYGKLGLHSIVELI 201 >UniRef50_D1W148 Transcriptional regulator, LuxR family n=3 Tax=Prevotella RepID=D1W148_9BACT Length = 221 Score = 52.5 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 136 LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 L K +KK ++DRE+E++ + QG K IA N + TV THR+N KL K Sbjct: 147 LPKVLKKKVLSDREIEVLSLIVQGYINKEIADRLNIGMTTVITHRKNIMEKLGVK 201 >UniRef50_C6C0G1 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C0G1_DESAD Length = 218 Score = 52.5 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 73/191 (38%), Gaps = 36/191 (18%) Query: 30 PHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFI------NLSTDSLSEFINRDNEWLS 83 A +GL ++ + L + + ++ V + +++ LS I + + Sbjct: 11 DDHALVREGLKTILKSQSGISVLGMAENGEEAVRLCRRLNPDVALMDLSMPIKSGVQAIQ 70 Query: 84 AVKGKQVVLIAARKSEALAN------YWYYNSNIRG-VVYAGLSRDIRKELVYVINGR-F 135 + G+ + A+ Y ++ G V+ S+++ + V+ G+ + Sbjct: 71 ELSGEG----KTKFLALTAHVEPDHIYSALDAGASGYVLKTSSSKELVMAIETVMQGKVY 126 Query: 136 LRKDIKKDK------------------ITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 L DI + +T+RE E+++ G + + IA + SVKTV Sbjct: 127 LAPDISAEVAKGFLQRDRSNSCDSLESLTEREREVLKQVLAGYKNREIADLLVISVKTVE 186 Query: 178 THRRNAEAKLY 188 HR N KL Sbjct: 187 KHRSNFMKKLG 197 >UniRef50_B9XL75 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XL75_9BACT Length = 234 Score = 52.5 bits (124), Expect = 8e-06, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 2/117 (1%) Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 LS N+D G Q ++ L +S+ + + + Sbjct: 98 LSIHTNKDYVLQIIKSGAQGYVLKDAPLTELVRAIESVHGGGAFFSPDISQIMLDQYLAE 157 Query: 131 INGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 + K K+T+RE E++ M A+G K +A V+TV THR KL Sbjct: 158 ATNGEESGNSK--KLTNRETEVLSMIAEGQSNKEMASRMGVGVRTVETHRERVMNKL 212 >UniRef50_C1DAE4 Probable transcriptional regulatory protein, LuxR family n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DAE4_LARHH Length = 224 Score = 52.5 bits (124), Expect = 8e-06, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 29/61 (47%) Query: 129 YVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 + + + + +++ RE+EI+R GM + IA + S +TV HR N KL Sbjct: 135 HTKQAQTREVEERLTRLSKRELEIVRYIVDGMSSREIAHLLELSPRTVEAHRANIYDKLE 194 Query: 189 S 189 Sbjct: 195 V 195 >UniRef50_C6CGT1 Two component transcriptional regulator, LuxR family n=21 Tax=Proteobacteria RepID=C6CGT1_DICZE Length = 213 Score = 52.5 bits (124), Expect = 8e-06, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 17/114 (14%) Query: 91 VLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY-----------------VING 133 +L+ + SE S G + + + V Sbjct: 81 ILVLSMYSEPQIARRVLKSGALGYITKDKDPEALLSAIRRVAQGARYIDHSIAEQIVFAD 140 Query: 134 RFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 R D + + +T RE +I+ M AQG+ +IA + S KTV TH+ K+ Sbjct: 141 CQTRGDGRHELLTSREHQIMVMLAQGLGVNAIAEMLAISNKTVSTHKSRLMEKM 194 >UniRef50_A6UL44 Response regulator receiver protein n=7 Tax=Rhizobiales RepID=A6UL44_SINMW Length = 218 Score = 52.5 bits (124), Expect = 8e-06, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 14/153 (9%) Query: 47 DRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWY 106 D L LS + + ++L LS + ++ +V + R +E A Sbjct: 37 DLLARLSDPE--AGCILLDLHMPGLSG-LELQDQLAECAPMLPIVFLTGR-AEIRATVQA 92 Query: 107 YNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDK----------ITDREMEIIRMT 156 + + SR+ E V R + + D+ +T RE E+ + Sbjct: 93 IKAGAEDFLEKPASREALLEAVDRALRRCDARRAEYDRIHALKARLVSLTPREFEVFGLI 152 Query: 157 AQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS 189 +G + K IA + S +TV HRR+A KL Sbjct: 153 TRGRRNKQIAYDLSTSERTVKAHRRSAMEKLGV 185 >UniRef50_A9IGY8 Two-component response regulator n=3 Tax=Burkholderiales RepID=A9IGY8_BORPD Length = 210 Score = 52.5 bits (124), Expect = 8e-06, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 23/48 (47%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 D +T RE +I G + IA N SV+TV HR AKL K Sbjct: 141 DVLTPRERDIASHIVAGRTNREIADALNISVRTVEVHRARLFAKLEVK 188 >UniRef50_C5S952 Two component transcriptional regulator, LuxR family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S952_CHRVI Length = 208 Score = 52.5 bits (124), Expect = 8e-06, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 16/149 (10%) Query: 54 LEKIRKDFVFINL---STDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSN 110 L+ + + ++L D L+ + W+ V++++A A + Sbjct: 44 LDTLECGCLILDLRMPDMDGLALLETLRSRWML----LPVIVVSAHGEIPTAVRSLHLGA 99 Query: 111 I----RGVVYAGLSRDIRKELVYVINGRFLRKDIKK-----DKITDREMEIIRMTAQGMQ 161 I + V + L +R L + R + ++ +T RE E++ QG Sbjct: 100 IDFLEKPVNHQRLLERVRAALEANLEFRRVFGSPRQLAERLASLTPREREVMEALVQGKA 159 Query: 162 PKSIARIENCSVKTVYTHRRNAEAKLYSK 190 K IA S++T+ +HR N KL + Sbjct: 160 NKVIAADLGASIRTIESHRANLMHKLGVR 188 >UniRef50_Q0SZI3 Putative uncharacterized protein n=2 Tax=Shigella flexneri RepID=Q0SZI3_SHIF8 Length = 242 Score = 52.5 bits (124), Expect = 8e-06, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 44/101 (43%) Query: 90 VVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDRE 149 +V+I SE L + ++ + I + N + + D ++ ++ Sbjct: 126 IVIITGHHSEDLCSLASKLGGVKIISPTEKIAKIENAINDAFNSKPKKIRFLTDILSPQQ 185 Query: 150 MEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 +E ++M AQG I+ N S+KTVY H+ A KL K Sbjct: 186 IETMKMVAQGRSVNEISAAMNISIKTVYAHKVRAINKLGIK 226 >UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFU8_DESAH Length = 219 Score = 52.5 bits (124), Expect = 9e-06, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 24/166 (14%) Query: 45 DIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANY 104 + R +E++ D V +++S L+ ++ + ++++++ +E + Sbjct: 36 ENGREAIKMVEELAPDVVLMDISMPELNG-MDATRQLKKKYPDVKILILSMHSTEEYI-F 93 Query: 105 WYYNSNIRGVVYAGLSRDIRKELVYVI--NGRFLRKDIKK-------------------- 142 + G + + + ++ FL I K Sbjct: 94 ETLRAGASGYLIKRSAPTDLIKAIHAAHAGDCFLSPSISKKVIKNYVQQKQGLSLEPRGL 153 Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 D ++ RE E++++ A+G + IA S KTV HR + + KL Sbjct: 154 DLLSAREREVLQLIAEGHANREIAGHLYISPKTVEAHRNHIQKKLG 199 >UniRef50_A9EQD2 Putative two-component system response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EQD2_SORC5 Length = 212 Score = 52.5 bits (124), Expect = 9e-06, Method: Composition-based stats. Identities = 39/184 (21%), Positives = 72/184 (39%), Gaps = 31/184 (16%) Query: 38 GLSELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQ----VVLI 93 G+SE++ L ++I + ++ L + + +KG +VL Sbjct: 25 GVSEVVQAGSGQEALRAQEIHR----CQVAVIELGLADRSGVDLIRELKGIAELRVIVLS 80 Query: 94 AARKSEALANYWYYNSNIRGVVYAGL-SRDIRKELVYVINGRF-LRKDI----------- 140 R +A + G + D+ + L V+ GR + D+ Sbjct: 81 MHRDEFRVAE--AMRAGADGYLSKQSRLADLLEALRTVVRGRTAVSPDVSAAMVRALQRR 138 Query: 141 ----KKD---KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIY 192 + D ++DRE +++R+ A G+ K +A + SVKTV THR AK+ + Sbjct: 139 DAAARGDMVAALSDRERQVLRLLAMGLSAKEVAAQLSISVKTVETHRARLCAKVATHSVA 198 Query: 193 KLVQ 196 L + Sbjct: 199 DLTR 202 >UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=Gammaproteobacteria RepID=A5F1Q5_VIBC3 Length = 216 Score = 52.1 bits (123), Expect = 9e-06, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 130 VINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY- 188 + + L K + ++ RE I+RM AQG K IA + N S +TV THR+N + KL Sbjct: 140 LFSQEILPVANKPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVETHRQNIKHKLDI 199 Query: 189 SKIYKLVQ 196 +L Q Sbjct: 200 HSTAELAQ 207 >UniRef50_Q89DY0 Two-component response regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89DY0_BRAJA Length = 225 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 119 LSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 S R EL + G + +T RE ++++ A+G K I+ I N SVKT Sbjct: 141 CSESCRNELDHGAGGEAD----RGRGLTPREQLVVKLVAEGYSNKGISAILNLSVKTTEA 196 Query: 179 HRRNAEAKL 187 HR A KL Sbjct: 197 HRAAAMRKL 205 >UniRef50_UPI0001C31456 two component transcriptional regulator, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31456 Length = 213 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 60/152 (39%), Gaps = 24/152 (15%) Query: 56 KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVV 115 ++R D + ++L + + + K +V+ A K+E L + + G + Sbjct: 46 ELRPDVIVLDLHMPEIGGMMVLERLRTELPSAKSIVMTATEKAEPLLD--AIAAGAAGYL 103 Query: 116 YAGLS-RDIRKELVYVINGRFL--------------------RKDIKKDKITDREMEIIR 154 S ++R+ ++ V G + D++K K+T E E++R Sbjct: 104 TKRTSGEELRQAILTVHGGGSVIAPQLAPHLLQAYSRASTGEAPDVRK-KLTATEHEVLR 162 Query: 155 MTAQGMQPKSIARIENCSVKTVYTHRRNAEAK 186 + AQGM + IA S +TV H K Sbjct: 163 LVAQGMTDRQIAERLFVSPRTVQNHLARIREK 194 >UniRef50_C7PJC5 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteroidetes RepID=C7PJC5_CHIPD Length = 208 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 26/158 (16%) Query: 53 SLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQ----VVLIAARKSEALANYWYYN 108 + EK D + ++++ + E +AVK K V+ ++ + N Sbjct: 42 AFEKKEPDILLLDINLPDI-----NGVELCAAVKKKHPDVYVIALSVHNEAPIINS-ILR 95 Query: 109 SNIRGVVYAGLSRDIRKELVY--VINGRFLRKDIKK--------------DKITDREMEI 152 G + +I E + + G ++ + ++ K+T RE EI Sbjct: 96 QGASGYIQKNALSEIIVEAIQDVLKGGSYVCEQSREILRRQRGKGGLTQLPKMTRREKEI 155 Query: 153 IRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 +++ A+G+ IA S TV +HR+N K Sbjct: 156 LKLAAEGLTIAQIAEKLFISPYTVESHRKNLMDKFEVN 193 >UniRef50_B1ZU68 Two component transcriptional regulator, LuxR family n=2 Tax=Opitutus terrae PB90-1 RepID=B1ZU68_OPITP Length = 238 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 17/115 (14%) Query: 91 VLIAARKSEALANYWYYNSNIRGVVYAGLSRDI-RKELVYVINGR-FLRKDIK------- 141 VL+ + + ALA + +G + D + L V GR +L K Sbjct: 84 VLVFSAITSALAVREALAAGAKGYLEKTAPFDEFKMALRSVAAGREYLGASAKRLLQQEA 143 Query: 142 --------KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 +T+RE E++R A+G+ K IA S +TV HR N + Sbjct: 144 HAAMRLGAGPALTNREREVLRYVAEGLGSKEIADRLALSTRTVENHRANILKRTG 198 >UniRef50_Q2BNR9 DNA-binding response regulator, LuxR family protein n=2 Tax=Neptuniibacter caesariensis RepID=Q2BNR9_9GAMM Length = 214 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 19/164 (11%) Query: 41 ELIVDIDRLIYLSL-EKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSE 99 E++ + SL + D V ++++ +S I L +++ + Sbjct: 28 EVLEAGNGDQAYSLCQSDSPDVVIMDVNMQGISG-IEATRRILQKKPDTRILFFSMYDEI 86 Query: 100 ALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFL----------------RKDIKKD 143 + + +G + + +I E V ++ L +KD + Sbjct: 87 PVVTQ-ALEAGAKGYITKSCTPEILIEAVKKVSAGQLYVEHELAMRLAVSRPEQKDKRLK 145 Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 ++T RE EI M AQG K I+ S KTV + ++KL Sbjct: 146 EMTQREFEIFVMLAQGSNVKEISEQLCISSKTVSNYTAILKSKL 189 >UniRef50_A5FQU5 Two component transcriptional regulator, LuxR family n=1 Tax=Dehalococcoides sp. BAV1 RepID=A5FQU5_DEHSB Length = 209 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 30/166 (18%) Query: 45 DIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVL----IAARKSEA 100 + L + D + ++L+ D++ L+ +K + + I Sbjct: 34 QNAKETKLKISANNYDLILLDLTLP--------DSQGLNLLKDIKTIKKHTPILVLSVHP 85 Query: 101 LANYWYY--NSNIRGVVYAGLSRDIRKELVYVI--NGRFLRK-----------DIKKDK- 144 Y + G + + + + + GR++ D + Sbjct: 86 EEQYGIRCIKAGASGFISKESAPFELIKAIRKVQAGGRYISPALAEIMACQIFDKDGPRH 145 Query: 145 --ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 ++DRE +I AQG++ +A S KT+YT+R + K+ Sbjct: 146 LCLSDREFDIFIGIAQGLRVTELAERFKLSPKTIYTYREHVLTKMG 191 >UniRef50_C1ZLY1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZLY1_PLALI Length = 243 Score = 52.1 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 120 SRDIRKELVYVINGR--FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 S +IR+ L R L D +T R++E++R A G K IAR+ + S K+V Sbjct: 154 SPEIRQRLAQDPVSRRFSLPADTPLTGLTGRQLEVLRHLANGASVKEIARLMHLSQKSVD 213 Query: 178 THRRNAEAKLY 188 +H+ KL Sbjct: 214 SHKYRIMHKLG 224 >UniRef50_A6GFX0 Two component transcriptional regulator, LuxR family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GFX0_9DELT Length = 220 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 25/47 (53%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS 189 D +T RE E++ + +G IA+I SVKT+ HR AKL Sbjct: 154 DSLTKREREVLTLVGEGKSSPEIAKILGLSVKTIEGHRGRIMAKLGV 200 >UniRef50_Q04VJ6 Receiver component of a two-component response regulator n=4 Tax=Leptospira RepID=Q04VJ6_LEPBJ Length = 221 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 59/166 (35%), Gaps = 28/166 (16%) Query: 56 KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVV 115 K+ D V ++S LS I+ + ++++ + I G V Sbjct: 47 KLNPDLVITDISMPGLSG-IDLVKNLRKQYPNIRTIILSRHDNREYV-QKLLELGINGYV 104 Query: 116 YAGL-SRDIRKELVYVINGR-FLRKDIKK-----------------------DKITDREM 150 D+ + + V G +L I ++DRE Sbjct: 105 LKDDAGNDLLRAIEAVHKGETYLSPGITAHFLSGFVGSGKPGEENQDAKKAFSVLSDRER 164 Query: 151 EIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLV 195 EI+++ A+G +SI +I S TV HR N KL K+ LV Sbjct: 165 EILKLVAEGNSNESIGKILGISPATVKVHRANIMKKLNLHKVADLV 210 >UniRef50_C4UJG9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UJG9_YERRU Length = 222 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 4/115 (3%) Query: 86 KGKQVVLIAARKSEALANYWYYNSNIRGVV-YAGLSRDIRKELVYVINGRFLRKDIKKDK 144 + K +V+ L NY N+ V+ +++R+ L ++ G K +K Sbjct: 85 QAKIIVMTQCDSIGMLKNYLLGLGNVSAVLDSKIEIQELRQSLQAILTGSLDSKAKRKQT 144 Query: 145 --ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS-KIYKLVQ 196 +T++E+++++ QGM +AR KTV +H+R A KL +Y L++ Sbjct: 145 MLLTNQEVKVLKHLLQGMPVFKVARKLQIHCKTVSSHKRAALNKLEVTSLYALMK 199 >UniRef50_UPI00016C4750 two-component transcriptional regulator, LuxR family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4750 Length = 216 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 15/121 (12%) Query: 82 LSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI--NGRFLRKD 139 L AVK + V+++ A + +A + +RG V S + +E V I GR+ Sbjct: 66 LRAVKDQSVLVLTASEHAGMARLF-LGMGVRGYVLKSSSTENVEEAVRTIAAGGRYFSPG 124 Query: 140 I------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 I + +RE+ ++ + A+G K I+ CSVK+V H+R A +L Sbjct: 125 IIGHSSGEGPRGPSGMALVEREVTVLVLVARGYSNKEISVKLMCSVKSVEIHKRRAMRRL 184 Query: 188 Y 188 Sbjct: 185 E 185 >UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=Mesorhizobium loti RepID=Q98DH9_RHILO Length = 215 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 138 KDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 D+ +T+RE E++R ++G K IA SVKTV +HR A KL Sbjct: 146 SDVTSRNLTNREREVVRFVSEGESNKRIAARLGVSVKTVDSHRTTAMRKLG 196 >UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1R6_THERP Length = 221 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 17/44 (38%), Positives = 25/44 (56%) Query: 145 ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 +++RE E++R+TA G + IA S KTV T+R KL Sbjct: 156 LSEREREVLRLTAAGYTAQEIADQLFLSPKTVETYRHRVMQKLG 199 >UniRef50_C7PCU2 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PCU2_CHIPD Length = 220 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 27/44 (61%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 K++ E +++M A+GM K IA+ N S+KTV HR N KL Sbjct: 153 KLSKTEFRVMQMIAEGMSTKEIAQSLNISIKTVENHRHNISKKL 196 >UniRef50_C9LCY4 Transcriptional regulator, LuxR family domain protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LCY4_9BACT Length = 235 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 + +T RE E++R+ G+ K IA S+ TV +HR+N AKL Sbjct: 166 RISPLTPRETEVLRLVVSGLLNKEIANRLGVSLTTVISHRKNLTAKLG 213 >UniRef50_A2SC82 Two component transcriptional regulator, LuxR family n=19 Tax=Proteobacteria RepID=A2SC82_METPP Length = 225 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + ++T+RE E++ + G K IA + SV+TV HR K+ K Sbjct: 158 RLTELTEREREVMMLVIDGRPNKLIAHALDISVRTVEVHRARVFEKMGVK 207 >UniRef50_C6VTA1 Transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTA1_DYAFD Length = 267 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%) Query: 106 YYNSNIRGVVYAGLSRDIRKELVYVINGRFLRK-DIKKD---KITDREMEIIRMTAQGMQ 161 + + + V D+R +++ G ++ + D K+T RE EI+ M +G Sbjct: 163 WLSLGVIDVSPNQSQTDVRSQVINFRTGELIQPVASRIDPGIKLTSREKEILGMIGKGKL 222 Query: 162 PKSIARIENCSVKTVYTHRRNAEAKLYSK 190 K I+ + + SV TV THR+ KL++ Sbjct: 223 SKEISALLDISVHTVNTHRQRILEKLHAD 251 >UniRef50_UPI00017443C2 hypothetical protein VspiD_13430 n=2 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017443C2 Length = 257 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 35/199 (17%) Query: 22 RSDKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTD- 69 R+ + + F G+ E++ DID S + D V +++S Sbjct: 26 RATRVLVVDDHPGFRLGVVEMLHDIDGFEVCGEAGDSTTAIASFRDLEPDLVVMDISLPG 85 Query: 70 ----------------SLSEFINRDNEWLSAVK----GKQVVLIAARKSEALANYWYYNS 109 + + +E ++ G L LA+ + + Sbjct: 86 RDGIEVTKMMLAERPHTTVLVLTMHDELFYGLRALKAGAYGYLRKDDTLTQLADAVRHTA 145 Query: 110 NIRGVVYAGLSRDIRKELVYVIN-GRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARI 168 N V L + +L + + I+ ++DREME+ A+G+ + IA Sbjct: 146 NRTHYVSPRLLAQLINKLAHTPTVDEEGKPAIQG--LSDREMEVFHWLAKGLGTRQIATQ 203 Query: 169 ENCSVKTVYTHRRNAEAKL 187 S+KT+ THR + ++KL Sbjct: 204 LCLSIKTIETHRAHIKSKL 222 >UniRef50_C7QC31 Two component transcriptional regulator, LuxR family n=95 Tax=Actinobacteria (class) RepID=C7QC31_CATAD Length = 236 Score = 51.7 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 25/159 (15%) Query: 56 KIRKDFVFINLSTDSL-SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGV 114 + R D V +++ L R ++ G +V+++ + + + S G Sbjct: 57 EARADVVLMDIRMPGLDGLAATRRIAADDSLAGVRVLILTTFEVDDYV-FEALRSGASGF 115 Query: 115 VYAGLSRDIRKELVYVI---------------NGRFLR--------KDIKKDKITDREME 151 + G D + + + RFL +TDRE E Sbjct: 116 LGKGARPDALIDAIRTVARGDALLSPSATRGLIARFLSLQDTEPVHPSPLLTTLTDRERE 175 Query: 152 IIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + + A GM IAR S TV TH +A KL ++ Sbjct: 176 LTALVADGMSNTDIARQLTLSPLTVKTHVNHAMTKLGAR 214 >UniRef50_C4XMF2 NarL family two-component response regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XMF2_DESMR Length = 218 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 26/48 (54%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 D +T RE E++R+ +G+ K +A SVKT HR + KL + Sbjct: 155 DSLTPREREVMRLVVEGLSNKEVAAALEISVKTAEHHRGSLMRKLGMQ 202 >UniRef50_UPI0001AEC81D LuxR family transcriptional regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC81D Length = 209 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 17/147 (11%) Query: 56 KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVV 115 K+ D + +++S +S + D + LS ++++++ ++ +G + Sbjct: 46 KLSPDVILMDISMPRMSGLVAID-KILSQRSDAKILVLSMHNEVEYIEA-MRDAGAKGYI 103 Query: 116 ---YAGLSRDIRKELVYVINGRF---LRKDIKK---------DKITDREMEIIRMTAQGM 160 +G S + V F L + +T RE E+ + G Sbjct: 104 LKESSGESLVEAIKKVAANKTCFPDELTQSSSDQCQKHVSPLSVLTRREREVFFLVVAGN 163 Query: 161 QPKSIARIENCSVKTVYTHRRNAEAKL 187 K IA + + S+KT HR N KL Sbjct: 164 TSKKIAELLDMSLKTAENHRSNIYKKL 190 >UniRef50_B0SY65 Two component transcriptional regulator, LuxR family n=1 Tax=Caulobacter sp. K31 RepID=B0SY65_CAUSK Length = 222 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 28/177 (15%) Query: 45 DIDRLIYLSLEKIRKDFVFINLSTDSL-SEFINRDNEWLSAVKGKQVVLIAARKSEALAN 103 R +++ D + +++S L + RD L ++++ SE L Sbjct: 39 SNGRDAVRMAKELVPDVMILDISMPDLSGVIVARDVRKLKTHT--ELLIFTMHDSEQLVR 96 Query: 104 YWYYNSNIRGVVYAGLSRDIRKELVY---------------VINGRFLRKD--------I 140 ++ RG V S D V + +L Sbjct: 97 E-VLSAGARGFVLKSASTDNIIAAVASLLNHKPYFCPGITDTVLRGYLSPGGHALGELIE 155 Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 + +T RE+ I+++ A+ K IA + + SVKTV +HR N KL + +V+ Sbjct: 156 GAETLTTRELLIVQLLAESRSNKVIASMLDISVKTVESHRGNIMRKLGAHSLADIVR 212 >UniRef50_Q2RYV1 Two-component response regulator n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYV1_SALRD Length = 229 Score = 51.7 bits (122), Expect = 2e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 34/64 (53%) Query: 127 LVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAK 186 L ++ G + +K+TDRE+ + R +G + IA + + KT+ T+RR A+ K Sbjct: 142 LSRLVRGSGDTETSPLEKLTDRELTVFRKIGEGHSVRQIADQLDLNRKTIETYRRRAKEK 201 Query: 187 LYSK 190 L + Sbjct: 202 LGHE 205 >UniRef50_A3U430 DNA-binding response regulator, LuxR family protein n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U430_9RHOB Length = 196 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 9/165 (5%) Query: 33 AYFYK-GLSEL-IVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQV 90 AY + GL E+ V+ +L D V ++ + F A V Sbjct: 19 AYLRQTGLHEVHPVEGLNAAQDALRAESFDLVLLDYRMPGMEAFDGLRL-IRRAFPDVPV 77 Query: 91 VLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELV-YVINGRFLRKDIKKDK----I 145 LI+ S +A G + L+ D V ++ G D + + Sbjct: 78 ALISGAASPEVARQ-AMGFGASGFLPKTLAPDELIRAVDRLVAGGTFLPDEAVARMSFSL 136 Query: 146 TDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 T RE+E++R A G K IAR TV H + KL ++ Sbjct: 137 TPREVEVVRGIAAGYSNKEIARELGVQEVTVKLHVKTLSRKLEAR 181 >UniRef50_C1TL94 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL94_9BACT Length = 215 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 35/202 (17%), Positives = 77/202 (38%), Gaps = 34/202 (16%) Query: 27 IWSPHDAYFYKGLSELIVDIDRLIYLSLEKI-----------RKDFVFINLSTDSLSEFI 75 I + F +G+ +++ D L L+L + D V ++++ ++ I Sbjct: 5 IIADDHELFLEGVRDILSREDDLDVLALARTGQEALELTLQHHPDVVVMDVTMPKMNG-I 63 Query: 76 NRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGR- 134 S++ +++ ++ + L + G S + +++++ Sbjct: 64 EASRRIKSSLGDVKILALSMHADKRLIAE-ILKAGASGYALKEGSSEELIRAIHIVSSGE 122 Query: 135 -FLRKDI------------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 +L I + ++DRE E++ + A+G K +A + S T Sbjct: 123 TYLSPKIASILIKDYLKLLDTAVPSRASLLSDREREVLALLAKGSSTKEVASSLHISKNT 182 Query: 176 VYTHRRNAEAKLY-SKIYKLVQ 196 V THRR KL I +L++ Sbjct: 183 VDTHRRRIMEKLDCGNIAELIR 204 >UniRef50_A0LGT7 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=A0LGT7_SYNFM Length = 214 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 85 VKGKQVVLIAARKSEALANYWYYN----SNIRGVVYAGLSRDIRKELVYVINGRFLRKDI 140 + G V ++ R +A A + +++ VV + +D R+ + R LR+ Sbjct: 83 ITGHGTVPMSVRAMKAGAVDFLQKPFGDTDLLSVVGQAIEKD-RESRRHRKEIRDLRQ-- 139 Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + +T RE E+ GM K IA KT+ HR AK+ ++ Sbjct: 140 RLATLTPREHEVFAHVVAGMLNKQIAFALGTVEKTIKVHRARVMAKMGAE 189 >UniRef50_A3Z7P9 Two-component response regulator, CheY-like receiver and wHTH DNA-binding domains n=1 Tax=Synechococcus sp. RS9917 RepID=A3Z7P9_9SYNE Length = 207 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 8/139 (5%) Query: 60 DFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL 119 D + ++LS + + + ++++++A+ A+ + ++++ +++A + Sbjct: 64 DLLILDLSLPDQGGEVVAE-ALVEFHPEARLIVLSAQ-----ASSFVCPASLQPMLHAVV 117 Query: 120 SRDIRKELVYVINGRFLRKDIKKD--KITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 + + + LR K+T RE E++ G+ + IA + SV TV Sbjct: 118 DKIEAYDCLGAEIAELLRAKAPAPLAKLTRREREVLSGIGAGLSNQQIADRMHLSVHTVE 177 Query: 178 THRRNAEAKLYSKIYKLVQ 196 THRRN KL K +LV+ Sbjct: 178 THRRNLSGKLGFKGAELVR 196 >UniRef50_Q1GM69 Transcriptional regulator, LuxR family n=7 Tax=Rhodobacterales RepID=Q1GM69_SILST Length = 185 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 26/49 (53%) Query: 142 KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 ++T RE ++ +M A+G+ K IAR S +TV HR K ++ Sbjct: 119 VTEMTRRERQVAKMLAEGLTSKEIARGLEISPRTVEVHRARLMDKFGAR 167 >UniRef50_A8L345 Two component transcriptional regulator, LuxR family n=33 Tax=Bacteria RepID=A8L345_FRASN Length = 249 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 21/108 (19%) Query: 104 YWYYNSNIRGVVYAGLSRDIRKELVYV-----------INGRFLRKDIK----------K 142 Y + RG + D+ + V+ + R L Sbjct: 114 YAALRAGARGFLLKDAGPDLLAQAVHAAACGDALIAPNVTARLLATFAGSGPAPVPAQPV 173 Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + +TDRE +++ A G IA + S+ TV TH + AKL ++ Sbjct: 174 EALTDREEQVLATVAGGRTNSEIAADLHISLSTVKTHIASLMAKLGAR 221 >UniRef50_UPI0001746AEC response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746AEC Length = 222 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 27/46 (58%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 +K++DRE E+ R+ +G K IA N S KTV HR + + KL Sbjct: 158 EKLSDREFEVFRLFGEGKTAKEIAAQLNLSPKTVSVHRDHIKEKLG 203 >UniRef50_Q7UXT1 Response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UXT1_RHOBA Length = 211 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 26/51 (50%) Query: 140 IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + D ++ RE EI+ + G K IA + SVKTV HR N K++ Sbjct: 137 KRIDSLSPREREILALVMDGRLSKQIASQLDISVKTVEAHRANILRKMHVD 187 >UniRef50_B8H3Q4 Two-component response regulator n=12 Tax=Bacteria RepID=B8H3Q4_CAUCN Length = 201 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 13/139 (9%) Query: 60 DFVFINLSTDSLSEFINRDNEWLSAVKGKQV-VLIAARKSEALANYWYYNSNIRGVVYAG 118 D + ++ +L+ D G VLI ++ ++G + Sbjct: 49 DVLISDIEMPNLT---GIDVAARLKADGAGTRVLIVTTFGRPGYLRRAMDAGVKGYLLKD 105 Query: 119 LSRDIRKELVYVI--NGRFLRK-------DIKKDKITDREMEIIRMTAQGMQPKSIARIE 169 + V I GR + D + D +TDRE EI+R+ +G K IA + Sbjct: 106 GPSSVLAAAVRTIAAGGRAIAPELSEAVWDAEPDPLTDREREILRLAEEGRSNKDIADVL 165 Query: 170 NCSVKTVYTHRRNAEAKLY 188 + S TV + A KL Sbjct: 166 DLSPGTVRNYLSEAAQKLG 184 >UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC-HTH domains) n=7 Tax=Bacteria RepID=B3DW63_METI4 Length = 243 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 73/207 (35%), Gaps = 33/207 (15%) Query: 15 NHMECQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVF 63 ++M + K + A +GL +LI + +EK D V Sbjct: 10 SYMNAGEKVHKVLIVDDHAILREGLIQLINSTPGLSVCGAAKNAHEGFELIEKTMPDVVL 69 Query: 64 INLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDI 123 +++S + + +A +++++ + E+L + RG + Sbjct: 70 VDISLPG-KSGLELIKDIHAAYPDIALLVLSMHE-ESLYAERVLRAGARGYLMKNEGGQK 127 Query: 124 RKELVYVINGRFLRKDIKK--------------------DKITDREMEIIRMTAQGMQPK 163 + + + + + ++DRE E+ ++ +G + Sbjct: 128 LIAAIQKVLAGGISVSERVANRILQGVSGKRKALSISPIEALSDREFEVFQLIGKGYGSR 187 Query: 164 SIARIENCSVKTVYTHRRNAEAKLYSK 190 IA + SVKTV +R + + KLY K Sbjct: 188 QIAEQLSLSVKTVEAYRASIKQKLYLK 214 >UniRef50_B5JNS6 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNS6_9BACT Length = 220 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 + ++DRE +I+ A GM K IA+ S+KTV +HR N KL Sbjct: 156 ETLSDREKQIVVFVASGMTNKEIAQNLGLSIKTVESHRSNISKKL 200 >UniRef50_A2SCN0 Two-component response regulator n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SCN0_METPP Length = 210 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 11/127 (8%) Query: 65 NLSTDSLSEFINRDNEWLSAV---KGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSR 121 + + L+ ++RD W++ V ++ S+ +A N R V+ +S Sbjct: 74 DEACRMLAFSMHRDAVWVAQALRAGALGYVTKSSAPSQLVAAVREVNQG-RRVLSPDVSG 132 Query: 122 DIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRR 181 ++ L+ +D ++ RE E++R+ G P+ IA+ + SVKTV+ Sbjct: 133 EVASALL-------DPQDSAAHGLSPREFEVMRLLVGGRTPQEIAQSLSLSVKTVHNVHY 185 Query: 182 NAEAKLY 188 ++KL Sbjct: 186 QIKSKLG 192 >UniRef50_P58664 Uncharacterized response regulatory protein ygeK n=21 Tax=Escherichia coli RepID=YGEK_ECO57 Length = 210 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 13/121 (10%) Query: 80 EWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFL--- 136 +W+ + K ++ K + + + +G V+ + I+ + Sbjct: 70 KWVKSHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFD 129 Query: 137 ----------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAK 186 + +++T+RE EI+++ A G K IA S KTV THR N K Sbjct: 130 SVHMDCEKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKK 189 Query: 187 L 187 L Sbjct: 190 L 190 >UniRef50_C8PZQ8 PAS domain containing response regulator, LuxR family n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZQ8_9GAMM Length = 202 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%) Query: 142 KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + ++T RE +I + G K I ++ S +T+ H+ N KL ++ Sbjct: 121 ESQLTAREAQIAQYVVNGYTCKEIGKLLGLSPRTIEVHKANLMKKLGAR 169 >UniRef50_C8WS10 Two component transcriptional regulator, LuxR family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WS10_ALIAD Length = 224 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 132 NGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 N + ++++ RE E++ + AQG + +A + SVKTV THR++ ++ Sbjct: 137 NAETVSPSRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQHIMRRIG 193 >UniRef50_B9Z3N9 Two component transcriptional regulator, LuxR family n=2 Tax=Chromobacterium group RepID=B9Z3N9_9NEIS Length = 217 Score = 51.3 bits (121), Expect = 2e-05, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 27/50 (54%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + +I+ RE E++ M A G+ K IAR S +TV HR N +KL Sbjct: 144 RLSRISGREREVLEMVADGLSSKEIARAMELSPRTVEAHRANLFSKLGVD 193 >UniRef50_B4CWX5 Two component transcriptional regulator, LuxR family n=3 Tax=Verrucomicrobia RepID=B4CWX5_9BACT Length = 210 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 18/147 (12%) Query: 56 KIRKDFVFINLSTDSLSEFINRDN---EWLSAVKGKQVVLIAA----RKSEALANYWYYN 108 K D V ++L + + EW A R +A A + Sbjct: 50 KHHPDVVLMDLRLPGANGTAATADLRREWPDARVLMFTTFDGEEDIYRAMQAGARGYLLK 109 Query: 109 SNIRGVV------YAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQP 162 S R + A R + L + GR D ++DRE E++++ A+G Sbjct: 110 SAAREELLSAIRAVAAGERHLSAALAQRLAGRVAAPD-----VSDREREVLQLIARGKAN 164 Query: 163 KSIARIENCSVKTVYTHRRNAEAKLYS 189 K IA S +TV H N K+ Sbjct: 165 KEIAAALGISEETVKRHASNLFVKMGV 191 >UniRef50_C9PHC4 Putative fimbrial protein Z transcriptional regulator n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PHC4_VIBFU Length = 183 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 68/165 (41%), Gaps = 11/165 (6%) Query: 39 LSELIVDIDRLIYLS-LEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARK 97 +E++V+ D + + L + + DF+ ++++ L F L GK + ++A + Sbjct: 13 FTEVLVESDPFVGVKKLRQTQVDFLILDVNLVKLDGFEVLRRLKLQGFTGK-TLFVSASE 71 Query: 98 SEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDK------ITDREME 151 S L + G + I ++ V I + + D ++ +E+ Sbjct: 72 SR-LYSETAMRVGADGYISKSEDLSILQDAVECILNGYSFFKVTTDTKSMDVELSKQELA 130 Query: 152 IIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKLVQ 196 + R G K IA I + S KT+ T++ K ++ +V+ Sbjct: 131 VFRFLVDGKSNKEIAEILSLSPKTISTYKSRILDK--YQVNSIVE 173 >UniRef50_A3VTU0 Two-component response regulator n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VTU0_9PROT Length = 200 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 23/48 (47%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 D +T RE E+ +G+ K +AR CS +T+ HR KL Sbjct: 137 DALTPREREVALALNEGLTNKEVARRLGCSPRTIEVHRARVFHKLGVS 184 >UniRef50_B6IQR3 Transcriptional regulatory protein FixJ n=1 Tax=Rhodospirillum centenum SW RepID=B6IQR3_RHOCS Length = 209 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 132 NGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 R K +++RE+E++ +G ++I + S+KTV HR K Sbjct: 133 TARRRAAAEKLAALSEREVEVLGQVIEGRTNRAIGDVLGISIKTVEAHRARIMEKTG 189 >UniRef50_A5FAZ3 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteroidetes RepID=A5FAZ3_FLAJ1 Length = 219 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 60/159 (37%), Gaps = 26/159 (16%) Query: 56 KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVV 115 + D + +++ +L+ I + S ++++++ +SE + G + Sbjct: 48 ATKPDLLIVDIRMPNLTG-IEVVEKLRSENNNVKIIMLSMHESEEYV-LKSIKAGADGYL 105 Query: 116 YAGLSRDIRKELVYVI--NGRFLRKDI----------------------KKDKITDREME 151 G S++ + ++ + G++ DI ++ IT RE E Sbjct: 106 LKGSSKEEFLKALHAVSSGGKYFSGDISSILISQLTNSTASLEPKQTLGEEMMITKREKE 165 Query: 152 IIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 I+ + G K IA S +T HR N KL K Sbjct: 166 ILTLLLSGKGNKEIAEALEISKRTAEVHRFNLMKKLKVK 204 >UniRef50_UPI00017463AF response regulator receiver domain protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017463AF Length = 251 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Query: 116 YAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 +S + ++L GR +D + +++DRE+++ RM +GM SIA+ S KT Sbjct: 128 SNRVSSSLLQDLSCGALGR--PRDAEVSRLSDRELQVFRMIGRGMSSTSIAQELGVSSKT 185 Query: 176 VYTHRRNAEAKL 187 V THR+ + KL Sbjct: 186 VETHRQRMKDKL 197 >UniRef50_Q1GZT3 Two component transcriptional regulator, LuxR family n=10 Tax=Proteobacteria RepID=Q1GZT3_METFK Length = 215 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 70/191 (36%), Gaps = 30/191 (15%) Query: 25 KYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRK-----------DFVFINLSTDSLSE 73 K + + A +GL +++ + + + ++ K D V +++S Sbjct: 8 KVVIADDHAILREGLKQILAETEDIEVVADAKNAAEAIKLAGTKGLDVVVLDISLPD-RS 66 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI-- 131 I N G V++++ + +A A + G + + D + + Sbjct: 67 GIEACNIIKKEHPGVAVLMLSMHREDAYA-IRALRAGAVGYLSKQSASDQLVTAIRTVAK 125 Query: 132 NGRFLRKDIK---------------KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 +++ ++ D +++RE + + M A G+ IA + SVKTV Sbjct: 126 GKKYISAEVALALADQVSGGLEKPIHDTLSNREFQTLTMIASGLSVSEIAENLSLSVKTV 185 Query: 177 YTHRRNAEAKL 187 +R KL Sbjct: 186 SMYRARLLEKL 196 >UniRef50_A1AKZ0 Two component transcriptional regulator, LuxR family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AKZ0_PELPD Length = 240 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 25/44 (56%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 +T RE EI+ AQG + IA + SV+TV +HR + KL Sbjct: 179 PLTRREAEILGYIAQGHTNRQIAELLFVSVRTVESHRARLQGKL 222 >UniRef50_D2QQM0 Two component transcriptional regulator, LuxR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQM0_9SPHI Length = 214 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 72/200 (36%), Gaps = 30/200 (15%) Query: 17 MECQNRSDKYIWSPHDAYFYKGLSELIVDID------------RLIYLSLEKIRKDFVFI 64 ME +S + + F GL L+ R + + +++ D + + Sbjct: 1 MEPITKSTTILIADDHQLFSDGLRTLLTTAHSPFTVIGQVYDGRDVIPVVHQLQPDLILL 60 Query: 65 NLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRD-I 123 +++ ++ + VV+I + L + G + S D + Sbjct: 61 DINLPH-RNGVDIARQLRREFPHVGVVIITMYSYQKLTEE-LRAVGVAGYLLKSASPDRL 118 Query: 124 RKELVYVING---------------RFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARI 168 L V++G R +K+ +T RE+EIIR+ G+ IA Sbjct: 119 MTCLTSVVSGKPFFDQLPNELAIDPRETDPFVKQFSLTPREIEIIRLIRNGLSTSQIAER 178 Query: 169 ENCSVKTVYTHRRNAEAKLY 188 S +T+ THR+N KL Sbjct: 179 LFLSAETIKTHRKNIYFKLG 198 >UniRef50_B8D0J2 Two component transcriptional regulator, LuxR family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0J2_HALOH Length = 211 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 16/142 (11%) Query: 60 DFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL 119 D V ++L+ + I + G +V+++ E Y S G + + Sbjct: 51 DLVLLDLNMPRMGG-ITAIKKIKEISPGIKVLILTIHDEEEYV-YEVIRSGAEGYIQKDV 108 Query: 120 SRDIRKELV-YVING-----RFLRKDIKKDK--------ITDREMEIIRMTAQGMQPKSI 165 + K + VI G R ++++ ++ RE E++ + AQGM K I Sbjct: 109 KPEELKRAIDKVIKGDKVFPRSTENEVREVVNEKYEVCELSSREQEVLELLAQGMSNKQI 168 Query: 166 ARIENCSVKTVYTHRRNAEAKL 187 A+ S KTV H N KL Sbjct: 169 AQELFISEKTVKNHVSNILRKL 190 >UniRef50_C6XAP6 Two component transcriptional regulator, LuxR family n=3 Tax=cellular organisms RepID=C6XAP6_METSD Length = 214 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 61/155 (39%), Gaps = 18/155 (11%) Query: 50 IYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNS 109 Y + D ++LS + + L+ + +V++ + ++ A A S Sbjct: 43 AYQVFGEYLPDVTVMDLSMPGMGG-LEAMRRILARYRTARVLIFSMHENAAFAMQ-TLKS 100 Query: 110 NIRGVVYAGLSRDIR-KELVYVINGR-FLRKDIKKD--------------KITDREMEII 153 RG V S D K +V V G+ ++ I + +++ RE E+ Sbjct: 101 GARGYVAKTGSFDELVKAVVEVARGKSYISTSIAQKIALQTVIGDGDLISQLSPREFEVF 160 Query: 154 RMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 R+ A+G + IA + S KTV + + KL Sbjct: 161 RLFAEGKNAEEIAEVLKISQKTVANYHTLVKQKLG 195 >UniRef50_A0L9F1 Two component transcriptional regulator, LuxR family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9F1_MAGSM Length = 206 Score = 50.9 bits (120), Expect = 2e-05, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 25/187 (13%) Query: 25 KYIWSPHDAYFYKGLSELIVDIDRLIYLS-----------LEKIRKDFVFINLSTDSLSE 73 + I + F +GL+ L+ L + + + D +++S L+ Sbjct: 3 RIIMADDHTIFRQGLAHLLSAHQELEIVGEAGRGDDALQLIRDLNPDVALLDISMPGLNG 62 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING 133 ++ + + +++L+ LA + VV ++ ++ V G Sbjct: 63 -LDVVKRVVEEKRPTRLLLLTMHDDPTLAIKAEQAGALGYVVKDNAFSELLDAILAVAAG 121 Query: 134 RFLRKDIKKDKITD-------------REMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 + ++ +K+ + RE E++R+ A G K IAR S KTV THR Sbjct: 122 KRFVSEVVAEKVNELERLDDLPVQLSPREKEVVRLVADGQTNKEIARSLGISPKTVDTHR 181 Query: 181 RNAEAKL 187 KL Sbjct: 182 TRLMRKL 188 >UniRef50_P31802 Nitrate/nitrite response regulator protein narP n=142 Tax=Bacteria RepID=NARP_ECOLI Length = 215 Score = 50.9 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 59/153 (38%), Gaps = 21/153 (13%) Query: 56 KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVL-IAARKSEALANYWYYNSNIRGV 114 ++ D + ++L+ +S + V + ++L ++ S+ A ++ G Sbjct: 50 RLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFA---LIDAGADGY 106 Query: 115 VYAGLSRDIRKELVYVINGRFLRKDIKKD-----------------KITDREMEIIRMTA 157 + ++ E + + + +T+RE++++ A Sbjct: 107 LLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLHELA 166 Query: 158 QGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 QG+ K IA + N S +TV H RN KL + Sbjct: 167 QGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199 >UniRef50_C7RMN3 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RMN3_9PROT Length = 213 Score = 50.9 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 66/192 (34%), Gaps = 25/192 (13%) Query: 22 RSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFI------NLSTDSLSEFI 75 R + + A GL L+ D + +S + + + + +++ + Sbjct: 4 RKLQILLVDDHAVVRGGLRLLLAQTDDMEVVSEAENAEQAISMIRQNEFDVALVDIGLPG 63 Query: 76 NRDNEWLSAVKGKQ---VVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + L +K ++ VL+ + +E + + G + + + Sbjct: 64 KGGLDLLKQIKAERPRIAVLMLSMYAEEVYAVRALKAGASGYLTKNSPPGTLLAAIRKVA 123 Query: 132 -NGRFLRKDI--------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 GR + + D ++DRE+E++R A G IA + S KTV Sbjct: 124 GGGRHVSPALLEQLAVEVGQGRKSASDALSDREIEVLRRLASGESLTQIAEALHLSPKTV 183 Query: 177 YTHRRNAEAKLY 188 T+R K Sbjct: 184 TTYRARIVEKTG 195 >UniRef50_A1K8Y3 Two-component response regulator n=6 Tax=Proteobacteria RepID=A1K8Y3_AZOSB Length = 215 Score = 50.9 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 27/46 (58%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS 189 +++ RE E+ R+ AQG+ K +AR S KTV+ HR++ K Sbjct: 151 RLSPREREVARLVAQGLPNKRVARALGISEKTVHVHRQHVMEKAGV 196 >UniRef50_C1ZHR0 Response regulator n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHR0_PLALI Length = 231 Score = 50.9 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 26/50 (52%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + D++TDRE E+ +G+ K I + + S KTV HR K+ + Sbjct: 156 RYDRLTDREREVFEEVIEGLSSKEIGQRLSVSFKTVEAHRAKIMKKMEAD 205 >UniRef50_Q0C2U0 DNA-binding response regulator FixJ n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C2U0_HYPNA Length = 205 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 11/112 (9%) Query: 85 VKGKQVVLIAARKSEA----LANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDI 140 + G V +A R +A Y + + R + V L + Sbjct: 82 LTGHGDVAVAVRAMKAGAVDFVEKPYAKQTLVDALTRAFERLESRRKEDV-----LADEA 136 Query: 141 KK--DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + + +T RE E++ G K IA + S +TV HR N K+ + Sbjct: 137 RGLIENLTAREKEVLHGLVDGQTNKEIAISLDISPRTVEIHRANVMEKMGAS 188 >UniRef50_B8G436 Transcriptional regulator, LuxR family n=3 Tax=Chloroflexus RepID=B8G436_CHLAD Length = 508 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 140 IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + I++RE EI+R+ A G + IA N SV TV H RN AK+ + Sbjct: 2 TNESPISEREREILRLVATGATNQQIAVALNISVNTVKVHLRNIFAKIGVE 52 >UniRef50_A8G0P8 Two component transcriptional regulator, LuxR family n=16 Tax=Gammaproteobacteria RepID=A8G0P8_SHESH Length = 209 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 46/121 (38%), Gaps = 9/121 (7%) Query: 76 NRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNI----RGVVYAGLSRDIRKELVY-- 129 + L ++ + +A + + V LS I K ++Y Sbjct: 65 EVQQKLLEIDSPLGIIFLTGHGDMPMAVDAFRKGACDFFQKPVSGKALSCAIDKAMLYSH 124 Query: 130 -VINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 + L++ K +++RE E++ + +GM K I+ S++T+ HR KL Sbjct: 125 RTFEAQSLKR--KLSTLSEREQEVLNLLTKGMTNKQISEALFLSLRTIEVHRAKVMKKLE 182 Query: 189 S 189 Sbjct: 183 V 183 >UniRef50_A6UG27 Response regulator receiver protein n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6UG27_SINMW Length = 215 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 26/51 (50%) Query: 140 IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 ++ D++T RE +++ + G+ K IA KT+ HR +KL + Sbjct: 139 MRIDRLTARETQVMHLVVSGLLNKQIAADLGTVEKTIKVHRGRMMSKLGVR 189 >UniRef50_Q07JN9 Two component transcriptional regulator, LuxR family n=8 Tax=Alphaproteobacteria RepID=Q07JN9_RHOP5 Length = 210 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 25/53 (47%) Query: 138 KDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 ++ +T RE E++ + + G K R S +T+ HR N KL +K Sbjct: 142 NFPGREPLTMREREVLDLFSSGNTNKEAGRQLGISPRTIEYHRANIMKKLGAK 194 >UniRef50_C3R1G9 Transcriptional regulator n=3 Tax=Bacteroidales RepID=C3R1G9_9BACE Length = 255 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Query: 106 YYNSNIRGVVYAGLSRDIRKELVYVINGRFL---RKDIKKDKITDREMEIIRMTAQGMQP 162 + ++ V + S I+ L G + D + +T+RE+E++R+ QG+ Sbjct: 151 WLMLSVIDVDASHESEIIKSHLYNFKTGEQIFIDLSDTLDEPLTNRELEVLRLMKQGLLS 210 Query: 163 KSIARIENCSVKTVYTHRRNAEAKL 187 K IA S+ TV THR+N KL Sbjct: 211 KEIANTLKVSINTVNTHRQNILQKL 235 >UniRef50_A5VJY7 Two component transcriptional regulator, LuxR family n=14 Tax=Lactobacillus RepID=A5VJY7_LACRD Length = 217 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 21/159 (13%) Query: 50 IYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNS 109 L E+ D + ++L+ + ++++ ++R N YN Sbjct: 39 ASLRAEQGDIDIIIMDLAMPPGENGLITIKRIHEHFPNTKIIIFSSRNEPQYINQAIYNG 98 Query: 110 NIRGVVYAGLSRDIRKELVYVING-RFLRKDIKKDK--------------------ITDR 148 ++ + +++ L + ING ++L +I K ++ R Sbjct: 99 ANSYILKSSSPKELVHALRHAINGEKYLDNNIMVTKKDLLVIKGGSPHFDLGNYVALSKR 158 Query: 149 EMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 E EI+ + G K IA S KTV H+ KL Sbjct: 159 EQEILPLIVLGYTNKEIATKMFISPKTVEAHKTKIMQKL 197 >UniRef50_UPI00017458E5 two component transcriptional regulator, LuxR family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017458E5 Length = 225 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 124 RKELVYVINGRFLRKD--IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRR 181 K + R ++K+ + +T R+ME++ + +GM +S+A+ + T+ HRR Sbjct: 121 LKRSANLATKRAIQKEAHTRVSSLTQRQMEVLELLIRGMSNRSVAQALGATEATIKIHRR 180 Query: 182 NAEAKL 187 K+ Sbjct: 181 RIMEKM 186 >UniRef50_B2STP5 Transcriptional regulator LuxR/uhpA family n=22 Tax=Xanthomonadaceae RepID=B2STP5_XANOP Length = 215 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 18/151 (11%) Query: 56 KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVV 115 +++ D V +L +S + + G +V++++ + L + G V Sbjct: 46 QLKPDIVLCDLHLPGVSG-LEITERIVKGDYGTRVIIVSVLEDGPLPKR-LLEAGASGYV 103 Query: 116 YAGLS--RDIRKELVYVINGRFLRKDIKK--------------DKITDREMEIIRMTAQG 159 G +R + R+L I + D ++ RE+E+ + QG Sbjct: 104 GKGGDAHELLRAVREVALGRRYLGNTIAQNLALSNLEGGGSPFDALSPRELEVALLLTQG 163 Query: 160 MQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 ++ + IA+ N S KT+ TH+ K+ + Sbjct: 164 LRQEDIAKRLNLSAKTINTHKARLFEKVGIQ 194 >UniRef50_A4WGH9 Two component transcriptional regulator, LuxR family n=1 Tax=Enterobacter sp. 638 RepID=A4WGH9_ENT38 Length = 202 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 66/187 (35%), Gaps = 26/187 (13%) Query: 27 IWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRK-----------DFVFINLSTDSLSEFI 75 I + F +++ + + + + D + ++L L + Sbjct: 4 IIADDHPLFRDAMAKKLAQQNDPDIIEAGSFSELESVLETFPAPDILILDLQFPGLDS-L 62 Query: 76 NRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRD-IRKELVYVINGR 134 ++ + +K +++++ AL + + G + + + + ++ + NG Sbjct: 63 SKLVTLKNKLKRTALIIVSMNTDAALV-QAVMATGVDGYISKNVPPEQLLSDIADIQNGN 121 Query: 135 FLRKDIKK------------DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRN 182 + I D +T+R+ E++++ QG K IA+ N S TV H Sbjct: 122 IVVNYIPGTLPNLRVTPAELDLLTERQREVLQLLVQGKSNKQIAQSLNISPFTVRIHVSQ 181 Query: 183 AEAKLYS 189 L Sbjct: 182 VLHVLGV 188 >UniRef50_B8L628 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L628_9GAMM Length = 199 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 13/113 (11%) Query: 88 KQVVLIAARKSEALANYWYYNSNIRGVVYAGLS-RDIRKELVYVI-NGRFLRKDI----- 140 ++V++ +L N + G+V G + ++ ++ N RFL + Sbjct: 68 LRIVVMTGLDQPSLLNR-LDAHGVHGIVSKGDDLQHVQSAVMAAYANRRFLSPSVAEILD 126 Query: 141 -----KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 + ++ RE E++ + G+ IAR + +TV T + NA KL Sbjct: 127 RREQRRATALSPREQEVVELFIAGLSVAEIARKLDRKKQTVSTQKNNAMRKLG 179 >UniRef50_B3RBJ1 Putative transcriptional regulator, signal receiver N-trem domain,LuxR C-term domain n=1 Tax=Cupriavidus taiwanensis RepID=B3RBJ1_CUPTR Length = 223 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 16/119 (13%) Query: 89 QVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY---VINGRFLRKDIKK--- 142 +VV+I+AR + A+ +RG V + G F ++ Sbjct: 93 RVVVISARANAAIVRR-AMKLGVRGYVSKEDPLEEVVRACAHAAFGRGCFCSPAVQAALQ 151 Query: 143 ---------DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIY 192 + T RE+E+IR+ AQG Q IA SV TV + + A KL + Sbjct: 152 RAALAGTPAREPTQRELEVIRLFAQGAQLTEIAAKLGRSVSTVSSQKTVAMRKLGVQTN 210 >UniRef50_B3PWQ9 Two-component response regulator nitrogen regulation protein n=7 Tax=Bacteria RepID=B3PWQ9_RHIE6 Length = 222 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 9/94 (9%) Query: 106 YYNSNIRGVVYAGLSRDIRKELVYVING-----RFLRKD----IKKDKITDREMEIIRMT 156 + + L + + + G R + + ++TDRE +++ Sbjct: 94 AMKAGASDFLEKPLREETLIAAINLAMGQRRPGRSIADSESVAARLRQLTDREHQVLTGV 153 Query: 157 AQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 G+Q K IA S +TV HR N AK+ ++ Sbjct: 154 LDGLQNKMIAYQLGISSRTVEVHRANVMAKMGAR 187 >UniRef50_C6W2Z0 Two component transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W2Z0_DYAFD Length = 205 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 12/142 (8%) Query: 60 DFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL 119 D F++++ +S I+ + + + ++ A + N ++ + Sbjct: 50 DIAFLDINLPDISG-IDLCKKVKDQFPEVKTLALSTFNERAYVSRMIQNGASGYLIKSSG 108 Query: 120 SRDIRKELVYVINGRFLRK-----------DIKKDKITDREMEIIRMTAQGMQPKSIARI 168 DI + + V G + +T RE E++ + A+G+ IA Sbjct: 109 KEDILEAIAQVQAGGYFMNVQFDQVTPATAPKTVPFLTRREKEVLVLIAEGLTNPQIAEQ 168 Query: 169 ENCSVKTVYTHRRNAEAKLYSK 190 SV TV +HR+N K Sbjct: 169 LFISVTTVNSHRQNLLIKFEVS 190 >UniRef50_A5WFD3 Two component transcriptional regulator, LuxR family n=3 Tax=Psychrobacter RepID=A5WFD3_PSYWF Length = 211 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 62/156 (39%), Gaps = 23/156 (14%) Query: 54 LEKIRKDFVFINLSTDSLS--EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNI 111 ++ + D V ++++ ++ E R ++ VK V ++++ ++ + + Sbjct: 43 VKALSPDVVLLDVNMPNIGGVETTKRLRQFDEKVKILAVSSVSSQPYPSM----LLKAGV 98 Query: 112 RGVVYAGLSRDIRKELVYVI--NGRFLRKDIKK---------------DKITDREMEIIR 154 G + G D + + + ++ D+ + D++++RE ++ Sbjct: 99 NGYITKGTPLDEMIKAIKKVYQGSKYFSSDVAEQLADMLLTDNEESPFDRLSEREKQVAM 158 Query: 155 MTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 M P+ IA SVKTV T+R K+ Sbjct: 159 MVVNCQSPQQIADQLFVSVKTVNTYRYRIFEKVGVD 194 >UniRef50_B1T1G9 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T1G9_9BURK Length = 204 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 27/44 (61%) Query: 145 ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 +++RE+ ++R A+G+ K I + S KT+ TH+ N AKL Sbjct: 144 LSERELTVLRYLAKGLSNKEIGDSLSLSNKTISTHKANILAKLG 187 >UniRef50_C1ZGK9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGK9_PLALI Length = 217 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 61/153 (39%), Gaps = 32/153 (20%) Query: 60 DFVFINLSTDSLSEFINRDNEWLSAVKGKQ-----VVLIAARKSEALANYWYYNSNIRGV 114 D V ++LS L+ F E L ++ ++ +V+ A ++L W N G Sbjct: 50 DVVVLDLSIPHLNGF-----ELLEQLQHQKRPPKVLVVTANEDLDSLQRSW--NLGAAGH 102 Query: 115 VYAGLSRDIRKELV-YVINGRFLRKDIKKDK-------------------ITDREMEIIR 154 + + D + + G + ++ K +++RE E+++ Sbjct: 103 LAKRSAADELIVAIRKIAAGEKVFPSKEESKAVKTLGFNETSGRLTGAESLSERETEVLK 162 Query: 155 MTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 + A G K IA + S+KTV T++ KL Sbjct: 163 LIAAGHMAKEIAAKLDISLKTVETYKSRGMQKL 195 >UniRef50_B5JEZ9 Transcriptional regulator, LuxR family protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JEZ9_9BACT Length = 200 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 25/52 (48%) Query: 136 LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 R + D +T RE E++ A G K IA SVKT+ HR + KL Sbjct: 125 DRSSERTDNLTAREREVLTFIASGNSNKDIALKLGLSVKTIDNHRCSMMRKL 176 >UniRef50_Q5NY27 DNA-binding response regulator, LuxR family n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NY27_AZOSE Length = 215 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 138 KDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 KDI +IT RE +++++ A+G IA + + TV HRRN KL + +L + Sbjct: 144 KDISAPRITARERQVLQLIAEGYTSTRIADRLHLAPSTVEVHRRNIMRKLDLHSVAELTK 203 >UniRef50_C8QGG5 Two component transcriptional regulator, LuxR family n=1 Tax=Pantoea sp. At-9b RepID=C8QGG5_9ENTR Length = 194 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Query: 114 VVYAGLSRDIRKELVYVINGRFLRKDIKKD---KITDREMEIIRMTAQGMQPKSIARIEN 170 VV + + ++ V+ G+ D+ + +T++E +I+ + A+G+ IA + Sbjct: 102 VVKSQSMAQLLSAILAVLGGQQAFPDLPERIDLPLTEKEQQIVALLARGLSNLQIAEQLH 161 Query: 171 CSVKTVYTHRRNAEAKLYSK 190 S KTV TH++N K + Sbjct: 162 ISNKTVSTHKKNILEKTGVQ 181 >UniRef50_Q21TB2 Transcriptional regulator, LuxR family n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TB2_RHOFD Length = 202 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 24/47 (51%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 +T RE EI+R A G K IAR S +T+ HR K+ ++ Sbjct: 143 TLTAREREIVRQLAAGQGTKQIARTLGVSPRTIDGHRARIMRKVGAQ 189 >UniRef50_Q021D5 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q021D5_SOLUE Length = 210 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 17/146 (11%) Query: 56 KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWY--YNSNIRG 113 ++ V ++ + S++ + + +A + ++L A A+Y + +RG Sbjct: 49 ELHPRVVVMDFAMPSMNGAVAARHILRTAPETAILIL----SMHAEASYVRTCLEAGVRG 104 Query: 114 VVYAGLSRDIRKELVYVIN----------GRFLRKDIKKDK-ITDREMEIIRMTAQGMQP 162 + V + G +T RE+E++++ G Sbjct: 105 YLLKNALDLEMVAAVKQVAAGKQVLDRRLGALDLPSGAAPAGLTTRELEVLQLIVHGKSN 164 Query: 163 KSIARIENCSVKTVYTHRRNAEAKLY 188 K IA + + S TV HR N L Sbjct: 165 KEIAAVLSLSANTVAVHRANIMQTLG 190 >UniRef50_A9BWP2 Two component transcriptional regulator, LuxR family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BWP2_DELAS Length = 218 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 110 NIRGVVYAG--LSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIAR 167 ++ +YA + I ++ G +L +++ RE E++ + GM IA+ Sbjct: 117 SLLPAIYAAYTDGQFISPSASKLLGGEWLGAVRTSIELSKREEEVLLLFISGMTVSEIAK 176 Query: 168 IENCSVKTVYTHRRNAEAKLY 188 S+KTV TH+ KL Sbjct: 177 KLYRSIKTVSTHKVAVMNKLG 197 >UniRef50_UPI0001C314AF two component transcriptional regulator, LuxR family n=2 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C314AF Length = 228 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 15/113 (13%) Query: 89 QVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN-GR-FLRKDIKK---- 142 VV++ ++ A A S RG V + D + V + GR +L ++ Sbjct: 89 AVVVLTMQQDPAFARE-ALRSGARGYVLKEAADDELVQAVRLAREGRTYLNPELGARMAA 147 Query: 143 --------DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 D +T RE+E++R+ A G IA+ S++TV +HR + + K+ Sbjct: 148 EPPPSGPPDDLTARELEVLRLIALGHTNAEIAQQLFLSIRTVESHRAHIQQKV 200 >UniRef50_Q5E1C3 Two component response regulator n=17 Tax=Gammaproteobacteria RepID=Q5E1C3_VIBF1 Length = 205 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 26/47 (55%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 +T RE E++++ QGM+ + +A S++T+ HR N KL Sbjct: 144 SLTAREQEVLKLIVQGMKNQQMADAMCVSLRTIEVHRSNLMKKLGVN 190 >UniRef50_UPI0001744C34 response regulator with a HTH DNA-binding domain n=2 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C34 Length = 234 Score = 50.5 bits (119), Expect = 3e-05, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 52/148 (35%), Gaps = 22/148 (14%) Query: 60 DFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL 119 + + ++++ + + + V++++ + + A + +G + Sbjct: 64 NVLIVDITLPD-RSGLELIKDLHATHNQMHVLVVSMHEEDLYAER-ALKAGAKGYIMKNA 121 Query: 120 SRDIRKE--------------------LVYVINGRFLRKDIKKDKITDREMEIIRMTAQG 159 D+ + L+ +G R D ++DRE E+ + +G Sbjct: 122 PHDVFESALTRVSQGGVAVSHKMTDRVLMAFSSGVQPRPDSGLHNLSDREFEVFQHLGEG 181 Query: 160 MQPKSIARIENCSVKTVYTHRRNAEAKL 187 +A S KTV HR N + KL Sbjct: 182 KSTHQVAESMRISPKTVDVHRMNIKNKL 209 >UniRef50_A4XNE1 Two component transcriptional regulator, LuxR family n=2 Tax=Pseudomonadaceae RepID=A4XNE1_PSEMY Length = 210 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 134 RFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + ++ +D++T RE E++ M AQG+ K +AR SV+TV THR + KL Sbjct: 136 KLVKPAPSEDELTPREREVLLMLAQGLNNKVMARTLQISVRTVETHRLSIRRKLAID 192 >UniRef50_C6VTJ6 Two component transcriptional regulator, LuxR family n=2 Tax=Sphingobacteriales RepID=C6VTJ6_DYAFD Length = 207 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 15/164 (9%) Query: 40 SELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSE 99 I D +L+ + + ++++ +S + + A +VV ++ Sbjct: 28 VTGIFDQADSALAALDSHIPEVMLMDINLPDISG-VTLCQQVKQAHPEIRVVALSIHNER 86 Query: 100 ALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGR-FLRKDIKK-------------DKI 145 ++ + V+ + DI L + G+ +L + +K ++ Sbjct: 87 SVIMSMLQSGASGYVLKNAIGDDIVAALQAAMEGQIYLCAETQKALNEAPGTEPKEIPRL 146 Query: 146 TDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS 189 T RE EI+ + QG + IA S TV +HR+N + K Sbjct: 147 TRREKEILELIGQGYTTQQIAAELFISTHTVESHRKNLKEKFGV 190 >UniRef50_C4XGR4 Putative NarL family two-component response regulator n=2 Tax=Desulfovibrio magneticus RS-1 RepID=C4XGR4_DESMR Length = 217 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 25/57 (43%) Query: 138 KDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKL 194 + ++T RE I +G K IA + S +TV T+R N KL K+ Sbjct: 151 PVLGDARLTQRERSIAARIRRGNSTKEIAEALDLSPRTVETYRDNIRKKLGIANKKI 207 >UniRef50_B8CMA1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=3 Tax=Gammaproteobacteria RepID=B8CMA1_SHEPW Length = 196 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Query: 86 KGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING-RFLRKDIKK-- 142 K +V+ + + A + V+ + D+ + V+ G ++L K ++ Sbjct: 72 KDLRVICLTMHDEQEYAEGAIAAGALGYVLKHEATDDLVDAVNSVLAGKQYLSKSVQVED 131 Query: 143 --DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIY-KLVQ 196 ++ R++ ++R+ AQG K +A S +TV H+ + + +K +L+Q Sbjct: 132 SAPTLSARQLSVLRLLAQGKSAKQVADALFISPRTVEFHKYSIMKLIEAKSSAELIQ 188 >UniRef50_B1ZPK5 Two component transcriptional regulator, LuxR family n=2 Tax=Verrucomicrobia RepID=B1ZPK5_OPITP Length = 196 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 26/50 (52%) Query: 133 GRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRN 182 GR ++T RE E++++ A+G K IA + S+KTV HR Sbjct: 147 GRDGLARTSGTRLTSRETEVLQLVAEGQANKQIASVLGISIKTVEKHRHR 196 >UniRef50_Q7NWW0 Probable two-component response regulator, LuxR family n=1 Tax=Chromobacterium violaceum RepID=Q7NWW0_CHRVO Length = 222 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 11/140 (7%) Query: 60 DFVFINLSTDSLSE--FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYA 117 D + I+ S ++ F +A K ++ + + N + ++Y Sbjct: 63 DVLVIDFSMPDEAKDGFAWLRVAQETARNAKIILFTSQLYLTKICQ--GKNVGVCEIIYK 120 Query: 118 GLSRDIRKELVYV---INGR----FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIEN 170 G S+ E + I GR D + +++T +E E++ A+GM IA + Sbjct: 121 GDSQLALLESIRTAADIEGRVKPEMESCDKEANRLTKKEWEVLLWIAEGMSVSEIASKKQ 180 Query: 171 CSVKTVYTHRRNAEAKLYSK 190 S+KT+ T +R+ KL K Sbjct: 181 RSIKTISTQKRSVMKKLGIK 200 >UniRef50_B8EIF2 Two component transcriptional regulator, LuxR family n=1 Tax=Methylocella silvestris BL2 RepID=B8EIF2_METSB Length = 209 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 12/111 (10%) Query: 90 VVLIAARKSEALANYWYYNSNIRGVVYAGLS-RDIRKELVYVINGRFLRK------DIKK 142 VV+I+A + N N G + S D+ L V++G + + Sbjct: 80 VVIISAIDDTTIVNQ-AINCGAAGFIPKSSSMEDLAAALKQVLDGGVYIPGSDEAREKRG 138 Query: 143 ----DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS 189 D +T R++ ++ + + G K IAR + S TV H KL Sbjct: 139 PAEADALTPRQLAVLGLLSAGKSNKEIARALSISDLTVKVHITTIFRKLGV 189 >UniRef50_D2R8D7 Two component transcriptional regulator, LuxR family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R8D7_9PLAN Length = 209 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 124 RKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNA 183 +++ + + + + + +T E+ ++R +G+ K IA + ++TV R N Sbjct: 123 QEQAQQTLRRQRAEIETRMNTLTSDEVVVMRKLLEGLPNKRIAADLDIGLRTVELRRSNI 182 Query: 184 EAKLYSK-IYKLVQ 196 K+ + + +LVQ Sbjct: 183 MRKMEADSLSELVQ 196 >UniRef50_A0LVS2 Two component transcriptional regulator, LuxR family n=35 Tax=Actinomycetales RepID=A0LVS2_ACIC1 Length = 303 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 39/79 (49%) Query: 109 SNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARI 168 + ++ ++ + E +I R + K+T+REME++R+ A+G+ + IA+ Sbjct: 204 HGGQSLISPSMASKLLNEFASLIKRGDARHQVPAPKLTEREMEVLRLVAKGLNNRDIAKQ 263 Query: 169 ENCSVKTVYTHRRNAEAKL 187 S TV H RN KL Sbjct: 264 LFISENTVKNHVRNILEKL 282 >UniRef50_UPI0001744DFC response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744DFC Length = 224 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 26/44 (59%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 +TDREME+ + ++G K IA +KT+ THR N A+L Sbjct: 159 TLTDREMEVFQWLSRGYGTKRIAERLGLGIKTIETHRANIMARL 202 >UniRef50_A9FM25 DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FM25_SORC5 Length = 233 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 26/48 (54%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 D +T RE +++R+ A G+ + A S KTV THR AKL K Sbjct: 169 DALTPRERQVLRLLAAGVSTRETAARLTISPKTVETHRVRIYAKLGCK 216 >UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ASJ5_PELPD Length = 208 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 19/146 (13%) Query: 44 VDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALAN 103 +D R+I+ L +++ I LS + E + R + G + L+ L + Sbjct: 63 IDATRMIHGRLPEVK----VIVLSMHNTREHVFRAMQ-----AGARAYLLKESAGSGLVD 113 Query: 104 YWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPK 163 + IRG Y G D + + F D ++ RE E+I++ +G Sbjct: 114 --AVRAVIRGECYFGEGVDAPQAVA-----GFKSP---LDSLSLREREVIQLVVEGRTSA 163 Query: 164 SIARIENCSVKTVYTHRRNAEAKLYS 189 IA + + S K++ T+R KL Sbjct: 164 EIAELLSLSPKSIETYRSRLMVKLGV 189 >UniRef50_Q46V74 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46V74_RALEJ Length = 206 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%) Query: 112 RGVVYAGLSRDIRKELVYV--INGRFLRKDIKKD---KITDREMEIIRMTAQGMQPKSIA 166 + V L + +R L + ++ R L ++ +T +E EI A G + I+ Sbjct: 106 KPVDGERLVQTVRAALEHSRGLHARRLAMSERRKRLATLTPKEREIAEHVASGKSSRQIS 165 Query: 167 RIENCSVKTVYTHRRNAEAKL 187 N SV+TV HR KL Sbjct: 166 EALNISVRTVENHRARVTEKL 186 >UniRef50_C1A5E6 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5E6_GEMAT Length = 213 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 22/150 (14%) Query: 54 LEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQ----VVLIAARKSEALANYWYYNS 109 +E R D V ++L+ + E L V+ K V++++ L ++ Sbjct: 46 IEAERPDLVILDLNMPGI-----DGLETLRRVRAKGLTTRVLVLSMHDETHLVGQ-ALSA 99 Query: 110 NIRGVVYAG-LSRDIRKELVYVING-RFLRKDI----------KKDKITDREMEIIRMTA 157 G + + ++ + V+ G R+L I + +T RE E++++ A Sbjct: 100 GADGYLLKDSMDDELFFAIESVLRGQRYLAAAIDRARLQESRMRPVSLTAREREVLQLIA 159 Query: 158 QGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 G+ ++A N S T HR N KL Sbjct: 160 NGLTTSAVAEALNISPHTATRHRANLMQKL 189 >UniRef50_Q3IGR9 Response regulator (Activator) in two-component regulatory system wtih UhpB, regulates uhpT expression (LuxR/UhpA family) n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3IGR9_PSEHT Length = 209 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 56/149 (37%), Gaps = 12/149 (8%) Query: 50 IYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNS 109 L++E + D +++S + + + + ++ + E + Sbjct: 38 AKLAVELEQPDIFIVDISLNGKETGLTFLSYLFEHFPNIKTIVASMHDHEPYVSN-ALRL 96 Query: 110 NIRGVVYAGLSRDIRKELVY--VINGRFLRKDIK---------KDKITDREMEIIRMTAQ 158 G V + + + V + R++ +D+ +T+RE+E + + ++ Sbjct: 97 GALGYVSKRSASEELIDAVKSVALGKRYISEDVNFALTTESSALTLLTNREIEALPLFSK 156 Query: 159 GMQPKSIARIENCSVKTVYTHRRNAEAKL 187 G+ K +A+ K + H+ N KL Sbjct: 157 GLNAKQVAQALGIMPKAAHVHKANIYTKL 185 >UniRef50_C9PZ73 Transcriptional regulator n=6 Tax=Prevotella RepID=C9PZ73_9BACT Length = 206 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query: 133 GRFLRK---DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS 189 GR L ++ ++DRE+E++ + QG+ K IA N + TV THR+N KL Sbjct: 126 GRNLPPLPHALQMKVLSDREIEVLSLIVQGLINKEIADRLNIGLTTVITHRKNIMDKLGM 185 Query: 190 K 190 K Sbjct: 186 K 186 >UniRef50_C1A6M2 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6M2_GEMAT Length = 206 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 26/47 (55%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 + +++T RE E+ A+G+ KSIA ++KTV HR K+ Sbjct: 142 RIERLTAREREVFEGVARGLPNKSIATELGIALKTVKVHRGRVMTKM 188 >UniRef50_Q2JYB4 Probable two-component response regulator protein n=1 Tax=Rhizobium etli CFN 42 RepID=Q2JYB4_RHIEC Length = 217 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 4/128 (3%) Query: 62 VFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNI--RGVVYAGL 119 V I+ + L + L AV+ +VL + S+ Y R L Sbjct: 69 VIIDNTVPDLDVDVLTLLICLQAVRHPVIVLTSEGDSQVTLTATRYPVTFLPRPFGTDNL 128 Query: 120 SRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTH 179 + IR + I+ L D + ++ RE ++++ +G+ K +A N SV TV H Sbjct: 129 VQLIRSSVEATISISQL--DCRYQSLSARERQVMQFVVEGLLNKQVAYKLNISVITVKAH 186 Query: 180 RRNAEAKL 187 R K+ Sbjct: 187 RGQVMRKM 194 >UniRef50_A0NVX8 Two component transcriptional regulator, LuxR family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NVX8_9RHOB Length = 217 Score = 50.1 bits (118), Expect = 4e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLV 195 +TDRE + + + G K IA S+KTV HR + KL + +L+ Sbjct: 149 PVLTDRERQTLNLILAGRSNKEIAEGLGISIKTVDKHRTSLMQKLNVHSVPQLM 202 >UniRef50_Q7UVB4 Nitrate/nitrite regulatory protein narP n=1 Tax=Rhodopirellula baltica RepID=Q7UVB4_RHOBA Length = 210 Score = 50.1 bits (118), Expect = 5e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Query: 118 GLSRDIRKELVYVINGRFLRKDIKKD---KITDREMEIIRMTAQGMQPKSIARIENCSVK 174 + +E + + G + +D +T RE E++R A G+ K IA++ S + Sbjct: 120 DGQQSWTREELRRVTGALATPRMNQDIDVPLTQRESEVLRQMALGLTNKEIAKMLGISYE 179 Query: 175 TVYTHRRNAEAKLYSK 190 TV H ++ KL Sbjct: 180 TVKEHVQHILRKLGVS 195 >UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillaceae RepID=A0RDP4_BACAH Length = 221 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 36/76 (47%) Query: 115 VYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 +Y G + K ++ ++K+ +T RE E+++ A+G K IA + + + Sbjct: 131 IYEGNANFHPKVTPALLGRSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQ 190 Query: 175 TVYTHRRNAEAKLYSK 190 TV TH N AKL Sbjct: 191 TVKTHVSNILAKLEVD 206 >UniRef50_UPI00017468E1 two-component response regulator n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468E1 Length = 210 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 10/97 (10%) Query: 104 YWYYNSNIRGVVYAGLSR-DIRKELVYVING-RFLRKDIKKDKI--------TDREMEII 153 Y + G + R D+ K + V G R+L DI + + RE E++ Sbjct: 97 YRAIRAGALGYLQKSAPREDLLKAIRTVGLGKRYLPGDIAQRLAERLGRPEPSPREREVL 156 Query: 154 RMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 A+G K IA + S +TV H N KL ++ Sbjct: 157 AQMAKGRSNKEIASVLGLSEETVKRHVSNVLEKLGAQ 193 >UniRef50_B8IGH6 Two component transcriptional regulator, LuxR family n=2 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IGH6_METNO Length = 232 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 60/163 (36%), Gaps = 25/163 (15%) Query: 57 IRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVY 116 ++ D ++++ L G +V++++ + E + + + G V Sbjct: 53 LQPDIAILDVALPGLHG-SEIRQRLAERAAGTRVIILSGTE-EPICAQRALAAGVCGYVL 110 Query: 117 AGLSRDIRKELVYVI--NGRFLRKDIKKD--------------------KITDREMEIIR 154 + + + + G +L I +T+RE E+IR Sbjct: 111 KRSAPETLLHAIRAVRTGGLYLDPTIAGQLVPAGGPPATRTSGIDGFSASLTNREREVIR 170 Query: 155 MTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIY-KLVQ 196 + A G K IA + K++ T+R A KL + K+VQ Sbjct: 171 LIALGFTNKEIAGKLGITAKSIETYRTRASEKLDIRTRAKIVQ 213 >UniRef50_C4ZNR1 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZNR1_THASP Length = 247 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + ++ RE E++++ G K IA S+KTV HR N + + Sbjct: 149 RLAALSGREREVLKLVIDGRLNKQIADDLGISIKTVKVHRANMMKTMAVR 198 >UniRef50_C4DI56 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DI56_9ACTO Length = 235 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 27/162 (16%) Query: 47 DRLIYLSLEKIRK-DFVFINLSTDS------LSEFINRDNEWLSAVKGKQVVLIAARKSE 99 D L+L + D V ++L+ L+ D+ + K +VL + ++ Sbjct: 38 DGDEALALIAAHEPDVVLLDLNMPGSDGAKVLTRLAASDH------RAKVIVLTSVTEAV 91 Query: 100 ALANYWYYNSNIRGVVYAGLSRD-IRKELVYVINGRFLRKDIKKDK-----------ITD 147 + + G +Y + D + + + V +G+ + +T Sbjct: 92 RVTE--AVAAGAAGFLYKDIDPDSLAQAIRSVADGQVIFAREAVTAMTAPAPGPVAALTA 149 Query: 148 REMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS 189 RE E++ + A G + IA+ + + KTV TH + KL Sbjct: 150 REREVLALVAAGRSNREIAKQLSVAEKTVKTHLSSLFRKLGV 191 >UniRef50_A9B6R2 ATP-dependent transcriptional regulator, MalT-like, LuxR family n=2 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B6R2_HERA2 Length = 870 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 3/84 (3%) Query: 107 YNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKK---DKITDREMEIIRMTAQGMQPK 163 +R ++ GL ++++ L + + +++RE+E++ + A G+ + Sbjct: 769 LKQLLRELIGRGLGNAYARQILAAFGQMPLMPSAQVALIEPLSERELEVLGLIAAGLSNQ 828 Query: 164 SIARIENCSVKTVYTHRRNAEAKL 187 +IA S+ TV H RN KL Sbjct: 829 AIADQLYLSLYTVKAHVRNIYGKL 852 >UniRef50_Q15U24 Two component transcriptional regulator, LuxR family n=4 Tax=Gammaproteobacteria RepID=Q15U24_PSEA6 Length = 212 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Query: 121 RDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 RD ++ ++ L + + +T+RE E++ G K IA N S +TV HR Sbjct: 135 RDNQQRTLH-----ALEVEKRCQSLTERETEVMHRVIAGQANKVIASELNLSQRTVEIHR 189 Query: 181 RNAEAKLYSK 190 N K+ + Sbjct: 190 ANVMDKMQVR 199 >UniRef50_A4BMD7 Response regulator n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BMD7_9GAMM Length = 217 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 + +T RE E++ +G K IAR + S +TV HR K+ + +LV+ Sbjct: 146 RLQTLTPRECEVMERLIEGKVNKIIARELDVSTRTVEIHRARVLHKMGVGNVSQLVR 202 >UniRef50_C4ZM15 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZM15_THASP Length = 226 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Query: 111 IRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIEN 170 +RG VY LS + + LV + R + +T R+ EI+ + G+ K IAR + Sbjct: 121 MRGDVY--LSPAVSRHLVGNMLARPPEDERAASVLTPRQTEILELIGSGLGTKEIARRLD 178 Query: 171 CSVKTVYTHRRNAEAKLYSK 190 SVKTV HR +L + Sbjct: 179 LSVKTVEAHRAQIMERLGVR 198 >UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFI8_DESAH Length = 220 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 69/164 (42%), Gaps = 20/164 (12%) Query: 43 IVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALA 102 + + R K + D V ++++ +++ I + + + A+ +V+ ++ Sbjct: 32 MAENGRQAVCLAVKFKPDIVIMDITMPNMNGSIATE-KIMQALPRTRVIALSMHADRRYI 90 Query: 103 NYWYYNSNIRGVVYAGLSRDIRKELVYVINGRF-LRKDIKKD------------------ 143 + + I V+ ++ + V G++ + I K Sbjct: 91 DRMFNAGAIAYVLKDSAFAELFDAIQAVGRGKYYISPSIAKTLADSCTSAPDTPQKCPFG 150 Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 +I+ RE E++++ A+G++ + IA S+KTV HRRN KL Sbjct: 151 RISPREREVLQLIAEGVKTRQIAERLFVSIKTVEAHRRNIMNKL 194 >UniRef50_A1AUQ3 Two component transcriptional regulator, LuxR family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AUQ3_PELPD Length = 212 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 28/150 (18%) Query: 60 DFVFINLSTDSLSEFINRDNEWLSAVKGKQ----VVLIAARKSEALANYWYYNSNIRGVV 115 + V +++S L A++ K V++++ E A + G V Sbjct: 50 NLVLLDISLPD-----QNGLNVLKALQQKHPRLPVIMVSTHPEEHYAVR-ALRAGASGYV 103 Query: 116 YAGLSRDIRKELVY--VINGRFLRKDIKK----------------DKITDREMEIIRMTA 157 G + + KE + + R++ + ++DRE ++ M A Sbjct: 104 NKGDAAVVLKEAIEKVLAGRRYVTPSQAELLADALCDGAEPAVLHHALSDREYQLACMMA 163 Query: 158 QGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 G IAR + SVKTV T+R KL Sbjct: 164 AGKTLTEIARELSLSVKTVSTYRTRVLEKL 193 >UniRef50_Q5P6A6 Two-component response regulator n=4 Tax=Rhodocyclaceae RepID=Q5P6A6_AZOSE Length = 218 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK-IYKLVQ 196 + ++ RE EI+ + G K +ARI S KTV HR +KL K + +L+Q Sbjct: 144 ESLSQREKEILDLVVGGNSSKEVARILGISHKTVEAHRGRLMSKLGVKSLGELIQ 198 >UniRef50_A3D3Y4 Two component transcriptional regulator, LuxR family n=46 Tax=Proteobacteria RepID=A3D3Y4_SHEB5 Length = 214 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 19/164 (11%) Query: 50 IYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNS 109 +Y K+R D VF++L + F + + ++++ A E A + Sbjct: 46 VYEKCLKLRPDLVFMDLKLPGMGGF-DVIRQLRQRWPEMMIIMLTATVEEKSARE-ALDV 103 Query: 110 NIRGVV--YAGLSRDIRKELVYVINGRFLRKDIKKDK--------------ITDREMEII 153 G V Y+ S + F+ + + + +T RE +++ Sbjct: 104 GANGYVLKYSPKSTLLAAIKCVCKGKNFIDPSLDERQIAALSGVVDGDMPLLTPREQQVL 163 Query: 154 RMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL-YSKIYKLVQ 196 ++ +G + + IA +KTV THR N KL + +L+ Sbjct: 164 KLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELMH 207 >UniRef50_UPI000038452B COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038452B Length = 220 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 14/117 (11%) Query: 84 AVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDI--- 140 A V+L ++ +S A+A + G + L+R+ + + V+ + Sbjct: 72 AAPDVPVILFSSVESAAVA-FHALVCGAAGFISKSLTREEMLQAIAVVLDGSTYPPLVDA 130 Query: 141 ----------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 + D +T RE ++ +G K IA S TV H + KL Sbjct: 131 KGRRRSESGERVDTLTVRERMVLEALVRGCSNKQIAYELQVSDTTVKVHVSSVLRKL 187 >UniRef50_D1AEE5 Two component transcriptional regulator, LuxR family n=37 Tax=Bacteria RepID=D1AEE5_THECD Length = 244 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Query: 118 GLSRDIRKELVYVINGRFLRKDIKK----DKITDREMEIIRMTAQGMQPKSIARIENCSV 173 + + V+ +L + + +T RE EI+++ A+G + IA SV Sbjct: 151 RGEPFLYPGAISVLIRSYLEQARQGEEPETPLTPREEEILKLVAEGHSSREIADTLFISV 210 Query: 174 KTVYTHRRNAEAKLYSK 190 KTV HR N AKL K Sbjct: 211 KTVERHRANILAKLGMK 227 >UniRef50_B4D4R4 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4R4_9BACT Length = 195 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 145 ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 +TDRE I++M A+GM K +A + + KTV HR KL + L + Sbjct: 131 LTDRERAILQMIAEGMSNKEMAERISIAPKTVEHHRAQVMQKLGMHDVATLTR 183 >UniRef50_C7Q6M6 Two component transcriptional regulator, LuxR family n=89 Tax=Bacteria RepID=C7Q6M6_CATAD Length = 225 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 53/157 (33%), Gaps = 29/157 (18%) Query: 56 KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIA----ARKSEALANYWYYNSNI 111 ++ D + ++L + E L VL+ R+ A + Sbjct: 51 ELEPDVILLDLVMPGVDGV--GAMELLREAGSTARVLVVTSFTDRRMIIPA----IRAGA 104 Query: 112 RGVVYAGLSR-------------------DIRKELVYVINGRFLRKDIKKDKITDREMEI 152 RG VY + ++ L+ + + + +T RE E+ Sbjct: 105 RGYVYKDVDPAALAAAVRSVHAGHVLLEPEVATALLDSGSNGAADQGPQAPALTAREREV 164 Query: 153 IRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS 189 + + AQG + IAR + KTV TH N KL Sbjct: 165 LVLIAQGRANREIARALVLAEKTVKTHVSNILMKLGV 201 >UniRef50_C3KMY2 Putative uncharacterized protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KMY2_RHISN Length = 365 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 24/50 (48%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + + +++RE +++ G K IA SV+T+ HR +L + Sbjct: 299 RVESLSERERQVLHALVAGCSHKVIAHELGISVRTIEVHRARMMRRLGVR 348 >UniRef50_Q0FK57 Putative two-component response regulator n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FK57_9RHOB Length = 209 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 134 RFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK-IY 192 R + + +T RE E++ G K IA + KTV HR K+ + I Sbjct: 136 CTARYEERLQSLTPRETEVLDAVVSGSLNKEIAHDLGLAEKTVKVHRARVMKKMGMRTIA 195 Query: 193 KLVQ 196 +LV+ Sbjct: 196 ELVR 199 >UniRef50_Q124P8 Two component transcriptional regulator, LuxR family n=6 Tax=Burkholderiales RepID=Q124P8_POLSJ Length = 229 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 29/50 (58%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + ++++RE E++ + G+ K I R S +TV THR N AKL ++ Sbjct: 161 RYAQLSEREREVLGLIVAGLTNKEIGRALAVSPRTVETHRANLFAKLEAE 210 >UniRef50_Q1QVM5 Two component transcriptional regulator, LuxR family n=29 Tax=Gammaproteobacteria RepID=Q1QVM5_CHRSD Length = 214 Score = 49.8 bits (117), Expect = 5e-05, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 18/151 (11%) Query: 56 KIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVV 115 ++R D V +++ + + + + + +VV++ A EA A ++ G + Sbjct: 45 ELRPDIVLMDIRMPGIGG-LEATRKIMRGMSDIKVVIVTAFLEEAFA-QRLMDAGAAGFI 102 Query: 116 YAGLSRDIRKELV-YVING-RFLRKDIKK--------------DKITDREMEIIRMTAQG 159 G D + + +G R++ DI + D+++ RE+++ M Sbjct: 103 SKGTELDEMVRAIRAIFDGQRYISPDIAQKVVLSKMGTQDNPFDQLSHRELQVAMMIVNC 162 Query: 160 MQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + I+ S KTV T+R KL + Sbjct: 163 QKVSDISDRLFLSPKTVNTYRYRIFEKLNVQ 193 >UniRef50_C6QDU5 Two component transcriptional regulator, LuxR family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QDU5_9RHIZ Length = 218 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 139 DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL-YSKIYKLVQ 196 D +++T RE E+ + GM K IA S KTV HR N K+ + LVQ Sbjct: 136 DANFNRLTCREREVAWLIFGGMSNKQIAAELELSCKTVEAHRANVMGKMSAHCVVDLVQ 194 >UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KCH2_PSEF5 Length = 208 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 132 NGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS 189 GR +T+RE+E++++ A+G+ IA + S KTV H+ N +KL Sbjct: 135 GGRGKHSSDVLAALTNRELEVLKLLAEGLTNLEIAEKLHLSNKTVSGHKINILSKLGV 192 >UniRef50_B7AAT6 Two component transcriptional regulator, LuxR family n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7AAT6_THEAQ Length = 207 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 35/72 (48%) Query: 117 AGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 A R + L + +R+ ++ ++ RE E++R+ AQG+ K +A S KTV Sbjct: 119 ARGERYLNPALAMRLAMELVRESAEEAPLSPREEEVLRLLAQGLSHKEVAEKLGISEKTV 178 Query: 177 YTHRRNAEAKLY 188 T+R KL Sbjct: 179 ATYRERGMEKLG 190 >UniRef50_A8TRW2 Response regulator, NarL-family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TRW2_9PROT Length = 207 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL-YSKIYKLVQ 196 ++ RE++++ G K IA S +TV HR N K+ S + +LV+ Sbjct: 141 TLSARELQVLEAMVAGRLNKQIAHDLGISQRTVEVHRANVMEKMRASSLAELVR 194 >UniRef50_Q3JAH3 Two component transcriptional regulator, LuxR family n=2 Tax=Nitrosococcus oceani RepID=Q3JAH3_NITOC Length = 201 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 18/45 (40%), Positives = 26/45 (57%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 + +T RE ++ ++ AQG K IA S++TV THR N KL Sbjct: 140 ESLTRRERQVFKLLAQGKMNKHIAAELCISIRTVETHRANIMEKL 184 >UniRef50_Q1LMP7 Two component transcriptional regulator, LuxR family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LMP7_RALME Length = 191 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 24/50 (48%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 K +++T RE E++ G++ K +A KT+ HR + KL Sbjct: 122 KIERLTPREREVLGWIVSGLRNKQVASELGTVEKTIKVHRAHVMQKLEVD 171 >UniRef50_C5S6K7 Two component transcriptional regulator, LuxR family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S6K7_CHRVI Length = 209 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 26/48 (54%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 + ++T RE E++ +T +G+ K IAR S +TV HR K+ Sbjct: 139 RFRQLTPREHEVLTLTTRGLTNKDIARQLGISPRTVENHRARMMEKMG 186 >UniRef50_C6E3E1 Two component transcriptional regulator, LuxR family n=4 Tax=Deltaproteobacteria RepID=C6E3E1_GEOSM Length = 223 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 35/74 (47%) Query: 114 VVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 V +S+D+ +L +D K +T RE +++R+ A+G + IA S Sbjct: 126 FVDGQVSQDLVAKLAQGAARDQALQDEKYGLLTPREQQVLRLVAEGSSTRQIAAAIELSP 185 Query: 174 KTVYTHRRNAEAKL 187 KTV HR N KL Sbjct: 186 KTVENHRTNLMKKL 199 >UniRef50_A3XI64 DNA-binding response regulator, LuxR family protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XI64_9FLAO Length = 212 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 74/186 (39%), Gaps = 28/186 (15%) Query: 35 FYKGLSELI--VDIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVL 92 E+I V + + SLE+ D V + + +L ++ E G ++++ Sbjct: 21 LKDTPHEIIDVVSDGKDLIPSLEEQVPDLVIMEIDMPNLQG-LSAIKELRKLFPGIKIMV 79 Query: 93 IAAR--KSEALANYWYYNSNIRGVVYA-GLSRDIRKELVYVINGR-FLRKDI-------- 140 + AL+ + G + ++ + K +V V G +L ++ Sbjct: 80 FSTHPEGMYALS---AIKAGAMGYIGKIAETQTVHKAVVQVARGGIYLNNNLVEMLSNTD 136 Query: 141 ---------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL-YSK 190 + K++ RE E++ M + G + K IA + + KTV T++ KL Sbjct: 137 SAQNNSLAYRYKKLSTRETEVLNMLSSGKRNKDIAESLDINEKTVSTYKTRLLKKLDAGS 196 Query: 191 IYKLVQ 196 + +L+Q Sbjct: 197 LAELIQ 202 >UniRef50_D1Y4J2 Two-component response regulator n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4J2_9BACT Length = 203 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 56/145 (38%), Gaps = 7/145 (4%) Query: 52 LSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNI 111 L E+ D V +++ T++ S ++ +VV++ + Sbjct: 41 LYCERTSPDLVLMDVCTENDSSGLDAAAAIKKRFPRVRVVMMTGLPEVTFVER-AREAGA 99 Query: 112 RGVVYAGLSRD-IRKELVYVINGRFLRKDIKKDKI-----TDREMEIIRMTAQGMQPKSI 165 VY L + + + G+ + +++ + T RE E++ + G+ + I Sbjct: 100 DSFVYKDLDVNGLAGVIRDTCAGKSVYPGRREEVLNFGELTRREREVLTLICDGLSRREI 159 Query: 166 ARIENCSVKTVYTHRRNAEAKLYSK 190 A N ++ +V TH N +K + Sbjct: 160 AERLNITINSVKTHFSNILSKTGYE 184 >UniRef50_Q89GQ5 Two-component response regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89GQ5_BRAJA Length = 274 Score = 49.8 bits (117), Expect = 6e-05, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 6/100 (6%) Query: 91 VLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREM 150 +++ SEAL + +N V+ + S I + + +T+RE Sbjct: 148 IILRDTDSEALVESLRHIANGHNVLPSTPSESIASRE------QGTNSESGLTTLTERER 201 Query: 151 EIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 +I+R+ ++G+ K I R N + T+ H N KL Sbjct: 202 QIMRLVSEGLSNKEIGRRLNTTDGTIKVHLHNIFQKLEIS 241 >UniRef50_Q7NCA4 LuxR family transcriptional regulatory protein n=1 Tax=Gloeobacter violaceus RepID=Q7NCA4_GLOVI Length = 232 Score = 49.4 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 1/140 (0%) Query: 48 RLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYY 107 + + ++R V ++ + + + FI + L + VL+ A + L W Sbjct: 76 QNLRAWSPQLRLLVVLLSANLEEAARFIESGADSLWTEQSSVSVLLRAMRKTTLGQRWVD 135 Query: 108 NSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIAR 167 + +R + V+ G + ++ RE EI+++ QG+ + IA Sbjct: 136 PACEVTSTLLESNRSPQVAAAPVVPGHR-AGVTQAVALSRREREILQLIQQGLSNQQIAD 194 Query: 168 IENCSVKTVYTHRRNAEAKL 187 SV TV H KL Sbjct: 195 HLYLSVNTVKNHMSRIFTKL 214 >UniRef50_C1SGH5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGH5_9BACT Length = 193 Score = 49.4 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 5/137 (3%) Query: 53 SLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIR 112 S+ D++ I+L L V++ K + Y+ Y +R Sbjct: 42 SIAVSYPDYIIIDL---FSRVADEEILNLLKNKYDTSKVVVLTTKQNDMLTYFSYTYGVR 98 Query: 113 GVVYAGLSRDIRKE-LVYVINGRFLRKDIKKD-KITDREMEIIRMTAQGMQPKSIARIEN 170 VY D L V+ G K++ +T RE EI+++ A G + I + Sbjct: 99 HYVYLDADVDEIIAGLCEVLGGLSENNCKKRNGSLTSRECEILKLIASGKTSREIGEMLC 158 Query: 171 CSVKTVYTHRRNAEAKL 187 S TV THR KL Sbjct: 159 ISKNTVDTHRNKMLQKL 175 >UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=B1ZVM0_OPITP Length = 219 Score = 49.4 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 106 YYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIK-KDKITDREMEIIRMTAQGMQPKS 164 N+ +G Y LS I K ++ + + +T R EI+++ A+G K Sbjct: 117 ALNAVRKGETY--LSPSISKSVLARFRQQEQDPRAEPTKALTPRMREIVQLIAEGRSTKE 174 Query: 165 IARIENCSVKTVYTHRRNAEAKLY 188 IA + N SVKT+ THR + A+L Sbjct: 175 IAFLLNLSVKTIETHRMHLMARLG 198 >UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides sp. JS614 RepID=A1SGL7_NOCSJ Length = 213 Score = 49.4 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 23/149 (15%) Query: 60 DFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL 119 D V +++ I AV +++++ EA Y S G + Sbjct: 46 DVVLLDIRMPK-RSGIEACLAIKEAVPSAKIIMLTVSDEEA-DLYEAVKSGASGYLLKDS 103 Query: 120 S-RDIRKELVYVINGRFL--------------------RKDIKKDKITDREMEIIRMTAQ 158 S ++ + + V +G+ L R + ++T+RE+E++R+ A+ Sbjct: 104 SIEEVAQAVRVVADGQSLISPSMAVKLIDEFKQMSRPERDHVPGLRLTERELEVLRLVAK 163 Query: 159 GMQPKSIARIENCSVKTVYTHRRNAEAKL 187 GM + IA+ S TV H RN KL Sbjct: 164 GMNNREIAKELFISENTVKNHVRNILEKL 192 >UniRef50_Q01NC6 Two component transcriptional regulator, LuxR family n=3 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NC6_SOLUE Length = 216 Score = 49.4 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 23/149 (15%) Query: 60 DFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL 119 D V ++++ L+ I + + + +V ++ E+ + R + Sbjct: 51 DVVVMDVAMPGLNG-IEAARQISAKLPHTAIVFLSMHSDESYV-LKALKAGARAYLLKDS 108 Query: 120 SR-DIRKELVYVINGR-FLRKDIKK-------------------DKITDREMEIIRMTAQ 158 + D+ ++ V G+ F I K + +T RE E++++ A+ Sbjct: 109 AEHDLIAAVIAVSEGKAFFSPAISKMLVEDYMRQMQERQIEDSYELLTTREREVLQLLAE 168 Query: 159 GMQPKSIARIENCSVKTVYTHRRNAEAKL 187 G K +A I N S+ TV THR N KL Sbjct: 169 GKNNKEVAAILNLSLYTVETHRGNILQKL 197 >UniRef50_B3E9L1 Two component transcriptional regulator, LuxR family n=1 Tax=Geobacter lovleyi SZ RepID=B3E9L1_GEOLS Length = 223 Score = 49.4 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 28/48 (58%) Query: 143 DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 +++ REMEI R+ A+G K IA S+KTV T++ AK+ K Sbjct: 161 TRLSRREMEIFRLLARGYMLKRIANDLGLSIKTVSTYKVRLSAKMGFK 208 >UniRef50_B4CYJ9 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYJ9_9BACT Length = 219 Score = 49.4 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%) Query: 136 LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 L K++DRE+ + + G+ + IA S+KTV THR N + KL + Sbjct: 149 LSAADGVAKLSDRELHVFELIGAGIPTREIATRLGISIKTVETHRENIKHKLELQ 203 >UniRef50_A9DUF6 Two-component response regulator n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DUF6_9RHOB Length = 209 Score = 49.4 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 144 KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 ++T +E + A G+ + IA + SVKTV HR KL + + +LV+ Sbjct: 142 RLTPQEHRVFERVAAGLSNREIASEMDISVKTVEVHRARVMRKLEANSVAELVR 195 >UniRef50_C5V5K1 Two component transcriptional regulator, LuxR family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V5K1_9PROT Length = 211 Score = 49.4 bits (116), Expect = 6e-05, Method: Composition-based stats. Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 29/159 (18%) Query: 54 LEKIRKDFVFINLSTD-----SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYN 108 L+ + D V ++L +L E I R +++++A + + Sbjct: 44 LQATQVDLVLLDLDMPGENGANLIERIRRH------YPDLLILILSAHDEIKVVSR-AVQ 96 Query: 109 SNIRGVVYAGLSRDIRKELVY--VINGRFLRKDIKKDK---------------ITDREME 151 + G + S E ++ V G++L + ++ ++ RE E Sbjct: 97 AGASGYICKDCSPKTLLEAIHKVVATGKYLSPLMAEELAYTSAIPQANNSLALLSSREQE 156 Query: 152 IIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 I R+ +G+ I+R S +TV H+ N KL K Sbjct: 157 IFRLLVEGLSNDDISRQLFISDRTVSAHKINLLNKLGLK 195 >UniRef50_Q7MEM2 Response regulator VieA n=31 Tax=Vibrio RepID=Q7MEM2_VIBVY Length = 588 Score = 49.4 bits (116), Expect = 7e-05, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 32/56 (57%) Query: 135 FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 F + K D++++RE+ + +M +G+ K IA + + KTV T++ + KL K Sbjct: 521 FSAQQNKLDQLSERELAVAQMLFKGLGNKQIANQLDINQKTVSTYKTRVQTKLGIK 576 >UniRef50_A8U4H7 Transcriptional regulator, LuxR family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8U4H7_9PROT Length = 305 Score = 49.4 bits (116), Expect = 7e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 25/49 (51%) Query: 139 DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 + ++ RE EI+ + A+G+ K IA S +TV HR +K+ Sbjct: 239 SERLRTLSAREREIMFLVAEGLANKQIAFRLGISFRTVEIHRARMMSKM 287 >UniRef50_C8X5Y3 Transcriptional regulator, LuxR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X5Y3_NAKMY Length = 938 Score = 49.4 bits (116), Expect = 7e-05, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 28/51 (54%) Query: 137 RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL 187 D +TDRE E+ + QG+ K IA SV+TV +H RNA AKL Sbjct: 871 SPAAHGDGLTDREAEVAGLVGQGLTNKQIAAQLFLSVRTVESHVRNALAKL 921 >UniRef50_C1DGA2 Transcriptional regulator, LuxR family n=3 Tax=Proteobacteria RepID=C1DGA2_AZOVD Length = 188 Score = 49.4 bits (116), Expect = 7e-05, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 28/72 (38%) Query: 119 LSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 L+ + L+ R R +T RE EI G+ K I R S +TV Sbjct: 104 LTPEEPFRLMVWHFERIDRPIRAAVNLTPREREISAHIVNGLTCKEIGRKLGISHRTVEV 163 Query: 179 HRRNAEAKLYSK 190 HR KL +K Sbjct: 164 HRARLMKKLAAK 175 >UniRef50_C1DAL9 Response regulator n=3 Tax=Proteobacteria RepID=C1DAL9_LARHH Length = 225 Score = 49.4 bits (116), Expect = 7e-05, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 25/48 (52%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 + D++T RE EI + A G K IA S KTV++HR N K Sbjct: 146 RLDRLTPREYEIACLAAAGHPNKRIAAQLGISEKTVHSHRLNLMDKTG 193 >UniRef50_A1ATT6 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ATT6_PELPD Length = 203 Score = 49.4 bits (116), Expect = 7e-05, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 37/196 (18%) Query: 30 PHDAYFYKGLSELIVD----------IDRLIYLSL-EKIRKDFVFINLSTDSLSEFINRD 78 F +GL L+ D L L + D ++++ L Sbjct: 8 DDHVMFRQGLINLLTTAEDIHIAAECGDGATALELIRSLEPDIAVLDITMPKL------- 60 Query: 79 NEWLSAVKGKQVVLIAARKSE------ALANYWYYNSNIRGVVYAGLS-RDIRKELVYVI 131 + +S + + +A R L ++ G + + ++ L V Sbjct: 61 -DGISITRAMGNLGLATRAIILTMHDDPLMYGRAVSAGAHGFILKDDAYEELLSALRTVA 119 Query: 132 NGRF----------LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRR 181 G + + ++T+RE EI+ + A G + IA+ S+KTV HR Sbjct: 120 AGGTAISRAIQHAAIEPEPPVAELTEREREILGLIAHGCTNRMIAQHLGISIKTVNNHRT 179 Query: 182 NAEAKLY-SKIYKLVQ 196 N KL +LV+ Sbjct: 180 NLMGKLNLHSTAELVR 195 >UniRef50_UPI0001B57527 transcriptional regulator, LuxR family protein n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B57527 Length = 845 Score = 49.4 bits (116), Expect = 7e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%) Query: 119 LSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 L R+ K + R L ++ RE ++ M +G+ K IA S +TV Sbjct: 763 LLRETTKVQRRLAGQRKLESPSGGRTLSRRERQVAEMVVRGLTTKEIAAELFLSPRTVDA 822 Query: 179 HRRNAEAKL 187 H KL Sbjct: 823 HVARVLNKL 831 >UniRef50_D2TRD6 LuxR-family transcriptional regulator n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TRD6_CITRO Length = 221 Score = 49.4 bits (116), Expect = 7e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 30/52 (57%) Query: 139 DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + +++ +++++I+ QG + IA++ N S KT++ H+ ++ +K Sbjct: 137 SCRHCRLSKKQLQVIQYMRQGYNVQRIAKLMNVSAKTIHAHKYRIMQRIGTK 188 >UniRef50_C7RSC2 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RSC2_9PROT Length = 211 Score = 49.4 bits (116), Expect = 7e-05, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%) Query: 141 KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKL-YSKIYKLVQ 196 + +T RE+ ++R G K IA S +TV HR KL + +L + Sbjct: 139 RFAALTRRELGVLRHVVTGRLNKQIAADLGISERTVKLHRTAITTKLQAHSVAELTR 195 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9AME2 Probable HTH-type transcriptional regulator matA... 219 5e-56 UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR fa... 175 6e-43 UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltapr... 166 5e-40 UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplas... 164 1e-39 UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family prot... 164 2e-39 UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR fa... 162 5e-39 UniRef50_P0AGA8 Transcriptional regulatory protein uhpA n=167 Ta... 162 6e-39 UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi... 161 9e-39 UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC... 159 5e-38 UniRef50_UPI00017452CB response regulator with a HTH DNA-binding... 158 1e-37 UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 T... 157 2e-37 UniRef50_A7HA46 Two component transcriptional regulator, LuxR fa... 156 4e-37 UniRef50_D1AAU8 Two component transcriptional regulator, LuxR fa... 156 4e-37 UniRef50_Q313W8 Two component transcriptional regulator, LuxR fa... 155 7e-37 UniRef50_D2QQM0 Two component transcriptional regulator, LuxR fa... 154 1e-36 UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 ... 154 1e-36 UniRef50_Q01NC6 Two component transcriptional regulator, LuxR fa... 153 3e-36 UniRef50_B8D0J2 Two component transcriptional regulator, LuxR fa... 153 3e-36 UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR fa... 153 3e-36 UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR fa... 153 3e-36 UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR fa... 153 4e-36 UniRef50_Q13QW9 Two component transcriptional regulator, LuxR fa... 153 5e-36 UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromon... 152 5e-36 UniRef50_C1A9U5 NarL family two-component response regulator n=1... 152 7e-36 UniRef50_Q0A525 Two component transcriptional regulator, LuxR fa... 152 7e-36 UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsoni... 151 9e-36 UniRef50_A6GFX0 Two component transcriptional regulator, LuxR fa... 151 9e-36 UniRef50_Q2BNR9 DNA-binding response regulator, LuxR family prot... 151 1e-35 UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=... 151 1e-35 UniRef50_C8WS10 Two component transcriptional regulator, LuxR fa... 151 1e-35 UniRef50_B1KE04 Two component transcriptional regulator, LuxR fa... 150 2e-35 UniRef50_B8FDP3 Two component transcriptional regulator, LuxR fa... 150 2e-35 UniRef50_C0Q9H4 Two component transcriptional regulator (LuxR fa... 150 2e-35 UniRef50_C7MN84 Response regulator containing a CheY-like receiv... 150 2e-35 UniRef50_B6A2W0 Two component transcriptional regulator, LuxR fa... 150 2e-35 UniRef50_A0L9F1 Two component transcriptional regulator, LuxR fa... 149 6e-35 UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacilla... 149 6e-35 UniRef50_A1ATT6 Two component transcriptional regulator, LuxR fa... 149 6e-35 UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR fa... 148 7e-35 UniRef50_B0SY65 Two component transcriptional regulator, LuxR fa... 148 7e-35 UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteri... 148 8e-35 UniRef50_A0NNP3 Response regulator containing a CheY-like receiv... 148 8e-35 UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR fa... 148 8e-35 UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Baci... 148 9e-35 UniRef50_Q021D5 Two component transcriptional regulator, LuxR fa... 148 1e-34 UniRef50_B4DAD9 Two component transcriptional regulator, LuxR fa... 148 1e-34 UniRef50_C6E3E1 Two component transcriptional regulator, LuxR fa... 148 1e-34 UniRef50_Q023R1 Two component transcriptional regulator, LuxR fa... 148 1e-34 UniRef50_A0LVS2 Two component transcriptional regulator, LuxR fa... 147 2e-34 UniRef50_Q1LE49 Two component transcriptional regulator, LuxR fa... 147 2e-34 UniRef50_Q04VJ6 Receiver component of a two-component response r... 147 2e-34 UniRef50_Q8YV43 Two-component response regulator n=7 Tax=Bacteri... 147 2e-34 UniRef50_B8G137 Two component transcriptional regulator, LuxR fa... 147 2e-34 UniRef50_B8GAC9 Two component transcriptional regulator, LuxR fa... 147 2e-34 UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ecto... 147 3e-34 UniRef50_C6E2Z1 Two component transcriptional regulator, LuxR fa... 146 3e-34 UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 T... 146 3e-34 UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator rece... 146 3e-34 UniRef50_B4D2X8 Two component transcriptional regulator, LuxR fa... 146 4e-34 UniRef50_C5T9P3 Two component transcriptional regulator, LuxR fa... 146 5e-34 UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=... 146 5e-34 UniRef50_B9XL75 Two component transcriptional regulator, LuxR fa... 145 6e-34 UniRef50_Q47DK2 Two component transcriptional regulator, LuxR fa... 145 6e-34 UniRef50_Q1H354 Two component transcriptional regulator, LuxR fa... 145 7e-34 UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR fa... 145 7e-34 UniRef50_C0N6H7 Response regulator receiver domain protein n=1 T... 145 7e-34 UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 ... 145 8e-34 UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=... 145 8e-34 UniRef50_Q2BNZ3 Transcriptional regulator, LuxR family protein n... 145 8e-34 UniRef50_B4CWX5 Two component transcriptional regulator, LuxR fa... 145 1e-33 UniRef50_B2JSN3 Two component transcriptional regulator, LuxR fa... 144 1e-33 UniRef50_C6XAP6 Two component transcriptional regulator, LuxR fa... 144 1e-33 UniRef50_B6JD38 Two component transcriptional regulator, LuxR fa... 144 1e-33 UniRef50_B5YIR2 Response regulator UvrY n=1 Tax=Thermodesulfovib... 144 1e-33 UniRef50_A1SKW0 Two component transcriptional regulator, LuxR fa... 144 2e-33 UniRef50_C7PJC5 Two component transcriptional regulator, LuxR fa... 144 2e-33 UniRef50_C1TL94 Response regulator containing a CheY-like receiv... 144 2e-33 UniRef50_UPI00017443C2 hypothetical protein VspiD_13430 n=2 Tax=... 144 2e-33 UniRef50_C7RMN3 Two component transcriptional regulator, LuxR fa... 144 2e-33 UniRef50_Q3BU15 Two-component system response regulator, LuxR fa... 143 3e-33 UniRef50_A1HU08 Two component transcriptional regulator, LuxR fa... 143 3e-33 UniRef50_C4DI56 Response regulator containing a CheY-like receiv... 143 3e-33 UniRef50_C7I0E4 Two component transcriptional regulator, LuxR fa... 143 3e-33 UniRef50_B1M5J4 Two component transcriptional regulator, LuxR fa... 143 3e-33 UniRef50_UPI0001C314AF two component transcriptional regulator, ... 143 4e-33 UniRef50_C0A9E4 Response regulator receiver protein n=1 Tax=Opit... 143 4e-33 UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistip... 143 4e-33 UniRef50_C6W2Z0 Two component transcriptional regulator, LuxR fa... 142 5e-33 UniRef50_Q5NZX4 Two-component response regulator n=3 Tax=Betapro... 142 6e-33 UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=... 142 6e-33 UniRef50_C4XMF2 NarL family two-component response regulator n=1... 142 6e-33 UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillac... 141 8e-33 UniRef50_Q67MG8 Two-component response regulator n=1 Tax=Symbiob... 141 9e-33 UniRef50_UPI0001AEC81D LuxR family transcriptional regulator n=1... 141 9e-33 UniRef50_D0LYS4 Two component transcriptional regulator, LuxR fa... 141 1e-32 UniRef50_Q1LEP5 Two component transcriptional regulator, LuxR fa... 141 1e-32 UniRef50_B4T4T3 EsrB n=38 Tax=Enterobacteriaceae RepID=B4T4T3_SALNS 141 1e-32 UniRef50_C1A5E6 NarL family two-component response regulator n=1... 141 1e-32 UniRef50_B9PAD6 Predicted protein n=33 Tax=cellular organisms Re... 141 1e-32 UniRef50_Q46SR4 Two component transcriptional regulator, LuxR fa... 141 2e-32 UniRef50_Q1GZT3 Two component transcriptional regulator, LuxR fa... 141 2e-32 UniRef50_Q0EZ33 Regulatory protein, LuxR:Response regulator rece... 141 2e-32 UniRef50_B2A6W2 Two component transcriptional regulator, LuxR fa... 140 2e-32 UniRef50_C4V5Y3 Response regulator n=3 Tax=Selenomonas RepID=C4V... 140 2e-32 UniRef50_C7RKP7 Two component transcriptional regulator, LuxR fa... 140 2e-32 UniRef50_A3D3Y4 Two component transcriptional regulator, LuxR fa... 140 2e-32 UniRef50_B2KBW2 Two component transcriptional regulator, LuxR fa... 140 2e-32 UniRef50_B8FFJ9 Two component transcriptional regulator, LuxR fa... 140 2e-32 UniRef50_A7LKW1 Putative two component transcriptional regulator... 140 3e-32 UniRef50_A1WT06 Two component transcriptional regulator, LuxR fa... 140 3e-32 UniRef50_C4ZM15 Two component transcriptional regulator, LuxR fa... 140 3e-32 UniRef50_B4SLZ0 Two component transcriptional regulator, LuxR fa... 140 3e-32 UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepI... 139 3e-32 UniRef50_B4CVL8 Two component transcriptional regulator, LuxR fa... 139 4e-32 UniRef50_A0R9S0 DNA-binding response regulator n=37 Tax=Bacillus... 139 5e-32 UniRef50_A5FAZ3 Two component transcriptional regulator, LuxR fa... 139 5e-32 UniRef50_D1AEE5 Two component transcriptional regulator, LuxR fa... 139 5e-32 UniRef50_C6C0G1 Two component transcriptional regulator, LuxR fa... 139 6e-32 UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR fa... 139 6e-32 UniRef50_A1TUY1 Two component transcriptional regulator, LuxR fa... 139 6e-32 UniRef50_Q3JL34 DNA-binding response regulator n=30 Tax=pseudoma... 139 7e-32 UniRef50_B6BTE7 Two component transcriptional regulator, LuxR fa... 138 7e-32 UniRef50_B6WQV4 Putative uncharacterized protein n=1 Tax=Desulfo... 138 9e-32 UniRef50_A1WBJ7 Two component transcriptional regulator, LuxR fa... 138 9e-32 UniRef50_C5SGD8 Two component transcriptional regulator, LuxR fa... 138 9e-32 UniRef50_Q2YB36 Two component transcriptional regulator, LuxR fa... 138 1e-31 UniRef50_C5V5K1 Two component transcriptional regulator, LuxR fa... 138 1e-31 UniRef50_B4DA09 Two component transcriptional regulator, LuxR fa... 138 1e-31 UniRef50_C6WIC9 Two component transcriptional regulator, LuxR fa... 138 1e-31 UniRef50_B2J8J5 Two component transcriptional regulator, LuxR fa... 138 1e-31 UniRef50_B8ET67 Two component transcriptional regulator, LuxR fa... 138 1e-31 UniRef50_B8IGH6 Two component transcriptional regulator, LuxR fa... 138 1e-31 UniRef50_C7Q6M6 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_A9FM25 DNA-binding response regulator n=1 Tax=Sorangium... 137 2e-31 UniRef50_B4CYJ9 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_B3RA82 Response regulator protein; Response regulator r... 136 3e-31 UniRef50_Q5NY27 DNA-binding response regulator, LuxR family n=1 ... 136 3e-31 UniRef50_B1ZN14 Two component transcriptional regulator, LuxR fa... 136 3e-31 UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium ... 136 3e-31 UniRef50_B7AAT6 Two component transcriptional regulator, LuxR fa... 136 4e-31 UniRef50_A1VB77 Two component transcriptional regulator, LuxR fa... 136 4e-31 UniRef50_UPI0001746AEC response regulator with a HTH DNA-binding... 136 5e-31 UniRef50_A1WN26 Two component transcriptional regulator, LuxR fa... 136 6e-31 UniRef50_A1BJU3 Two component transcriptional regulator, LuxR fa... 136 6e-31 UniRef50_A8L345 Two component transcriptional regulator, LuxR fa... 136 6e-31 UniRef50_A5WFD3 Two component transcriptional regulator, LuxR fa... 135 6e-31 UniRef50_Q11YW8 Two component transcriptional regulator, LuxR fa... 135 6e-31 UniRef50_B1ZPK5 Two component transcriptional regulator, LuxR fa... 135 7e-31 UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides... 135 7e-31 UniRef50_Q1QVM5 Two component transcriptional regulator, LuxR fa... 135 9e-31 UniRef50_C6VTJ6 Two component transcriptional regulator, LuxR fa... 135 9e-31 UniRef50_A4ABN5 Two-component system response regulator n=1 Tax=... 135 1e-30 UniRef50_A4CN07 Response regulator containing a CheY-like receiv... 134 1e-30 UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR fa... 134 1e-30 UniRef50_B2G7N1 Two component response regulator n=7 Tax=Lactoba... 134 1e-30 UniRef50_C6DD36 Two component transcriptional regulator, LuxR fa... 134 1e-30 UniRef50_Q72LA2 Probable two-component response regulator n=1 Ta... 134 1e-30 UniRef50_C6C961 Two component transcriptional regulator, LuxR fa... 134 2e-30 UniRef50_C4KBL1 Two component transcriptional regulator, LuxR fa... 134 2e-30 UniRef50_B8CMA1 Response regulator containing a CheY-like receiv... 134 2e-30 UniRef50_D1XHI5 Two component transcriptional regulator, LuxR fa... 134 2e-30 UniRef50_A3WDJ9 Two-component response regulator n=1 Tax=Erythro... 134 2e-30 UniRef50_P31802 Nitrate/nitrite response regulator protein narP ... 133 3e-30 UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 ... 133 4e-30 UniRef50_C7LUF3 Two component transcriptional regulator, LuxR fa... 133 4e-30 UniRef50_B2JVP2 Two component transcriptional regulator, LuxR fa... 133 4e-30 UniRef50_B5JPJ0 Sigma-70, region 4 family n=3 Tax=Verrucomicrobi... 133 5e-30 UniRef50_A2SCN0 Two-component response regulator n=1 Tax=Methyli... 133 5e-30 UniRef50_C6CGT1 Two component transcriptional regulator, LuxR fa... 133 5e-30 UniRef50_A9WKI8 Response regulator receiver n=3 Tax=Chloroflexac... 133 5e-30 Sequences not found previously or not previously below threshold: UniRef50_B7GL14 DNA-binding response regulator, NarL family (REC... 157 2e-37 UniRef50_C7RBI1 Two component transcriptional regulator, LuxR fa... 150 2e-35 UniRef50_D2BDI1 Response regulator receiver protein n=8 Tax=Acti... 149 3e-35 UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicut... 148 1e-34 UniRef50_O07528 Uncharacterized transcriptional regulatory prote... 145 7e-34 UniRef50_UPI00018507A5 two component LuxR family transcriptional... 144 1e-33 UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR fa... 144 2e-33 UniRef50_C4ZNU7 Two component transcriptional regulator, LuxR fa... 144 2e-33 UniRef50_P54662 Transcriptional regulatory protein degU n=24 Tax... 144 2e-33 UniRef50_C8WSR5 Two component transcriptional regulator, LuxR fa... 143 3e-33 UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=... 143 3e-33 UniRef50_A5G586 Two component transcriptional regulator, LuxR fa... 143 4e-33 UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR fa... 142 7e-33 UniRef50_A8MF72 Two component transcriptional regulator, LuxR fa... 141 9e-33 UniRef50_Q024Y7 Two component transcriptional regulator, LuxR fa... 141 1e-32 UniRef50_C0A2L6 Response regulator receiver protein n=1 Tax=Opit... 141 1e-32 UniRef50_B2A8K6 Two component transcriptional regulator, LuxR fa... 141 2e-32 UniRef50_C4V1Z2 Transcriptional regulator n=1 Tax=Selenomonas fl... 140 2e-32 UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=... 140 3e-32 UniRef50_B7A7I0 Two component transcriptional regulator, LuxR fa... 140 3e-32 UniRef50_B9XC41 Two component transcriptional regulator, LuxR fa... 139 4e-32 UniRef50_A7NP18 Two component transcriptional regulator, LuxR fa... 139 5e-32 UniRef50_C6W5G0 Two component transcriptional regulator, LuxR fa... 139 5e-32 UniRef50_A1ZEE6 Two-component response regulator n=2 Tax=Microsc... 139 7e-32 UniRef50_A8ZMB6 Two-component transcriptional regulator, LuxR fa... 138 1e-31 UniRef50_Q09C30 Two-component system regulatory protein n=3 Tax=... 138 1e-31 UniRef50_A4J6C2 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_Q39TN7 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_C4KAM8 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_A9B5L0 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_C7PEC4 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_B1Y743 Two component transcriptional regulator, LuxR fa... 137 2e-31 UniRef50_Q15T22 Two component transcriptional regulator, LuxR fa... 137 3e-31 UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP ... 136 4e-31 UniRef50_UPI0001B502C9 two component LuxR family transcriptional... 136 4e-31 UniRef50_A1ZYF0 DNA-binding response regulator, LuxR family n=1 ... 136 4e-31 UniRef50_B4D831 Two component transcriptional regulator, LuxR fa... 136 4e-31 UniRef50_Q6ADI3 Two-component system, regulatory protein n=1 Tax... 136 4e-31 UniRef50_C0DXM6 Putative uncharacterized protein n=1 Tax=Eikenel... 136 4e-31 UniRef50_Q51373 Response regulator gacA n=50 Tax=Gammaproteobact... 136 5e-31 UniRef50_Q89IF1 Two-component response regulator n=2 Tax=Bradyrh... 136 5e-31 UniRef50_C0QJ84 Two-component response regulator protein n=1 Tax... 136 5e-31 UniRef50_C9M8B3 DNA-binding response regulator, LuxR family n=1 ... 136 6e-31 UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Sele... 136 6e-31 UniRef50_B5EEC0 Two component transcriptional regulator, LuxR fa... 135 7e-31 UniRef50_C0N7Q7 Sigma-70, region 4 family n=1 Tax=Methylophaga t... 135 7e-31 UniRef50_A3TJD7 Two-component response regulator n=1 Tax=Janibac... 135 7e-31 UniRef50_A8L9Z7 Two component transcriptional regulator, LuxR fa... 135 7e-31 UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. ora... 135 8e-31 UniRef50_Q1ASU8 Two component transcriptional regulator, LuxR fa... 135 8e-31 UniRef50_B2J2N1 Two component transcriptional regulator, LuxR fa... 135 8e-31 UniRef50_D1Y4N4 Two component transcriptional regulator, LuxR fa... 135 9e-31 UniRef50_D2AX12 Response regulator receiver protein n=100 Tax=Ac... 134 1e-30 UniRef50_Q39C19 Two component transcriptional regulator, LuxR fa... 134 1e-30 UniRef50_C1TQ52 Response regulator containing a CheY-like receiv... 134 1e-30 UniRef50_B1ZT64 Two component transcriptional regulator, LuxR fa... 134 1e-30 UniRef50_A4VZN8 Response regulator containing a CheY-like receiv... 134 1e-30 UniRef50_C4RQT0 LuxR family two-component system transcriptional... 134 2e-30 UniRef50_C4L5Q6 Two component transcriptional regulator, LuxR fa... 134 2e-30 UniRef50_A1K960 Probable transcriptional regulator, LuxR family ... 134 2e-30 UniRef50_C0INV4 Two component transcriptional regulator n=1 Tax=... 134 2e-30 UniRef50_B8CZJ8 Two component transcriptional regulator, LuxR fa... 134 2e-30 UniRef50_B9XH34 Two component transcriptional regulator, LuxR fa... 134 2e-30 UniRef50_B9XAW3 Two component transcriptional regulator, LuxR fa... 133 2e-30 UniRef50_B2JVJ8 Two component transcriptional regulator, LuxR fa... 133 3e-30 UniRef50_Q47FR0 Two component transcriptional regulator, LuxR fa... 133 3e-30 UniRef50_C6CZA5 Two component transcriptional regulator, LuxR fa... 133 3e-30 UniRef50_B1WQK4 Two-component response regulator n=19 Tax=Cyanob... 133 3e-30 UniRef50_Q1IK52 Two component transcriptional regulator, LuxR fa... 133 3e-30 UniRef50_C6X598 Two-component response regulator n=1 Tax=Flavoba... 133 3e-30 UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92... 133 4e-30 UniRef50_Q11VM8 Two-component response regulator n=1 Tax=Cytopha... 133 4e-30 UniRef50_C7R398 Two component transcriptional regulator, LuxR fa... 133 4e-30 UniRef50_Q1AST2 Two component transcriptional regulator, LuxR fa... 133 4e-30 UniRef50_D1C9Z8 Two component transcriptional regulator, LuxR fa... 133 4e-30 UniRef50_D1VBH1 Two component transcriptional regulator, LuxR fa... 133 5e-30 UniRef50_C5BV53 Two component transcriptional regulator, LuxR fa... 132 5e-30 UniRef50_A4VLT5 DNA-binding response regulator, LuxR family n=15... 132 5e-30 UniRef50_D1C6S1 Two component transcriptional regulator, LuxR fa... 132 6e-30 UniRef50_D1C3I4 Two component transcriptional regulator, LuxR fa... 132 6e-30 >UniRef50_Q9AME2 Probable HTH-type transcriptional regulator matA n=56 Tax=Bacteria RepID=MATA_ECOLX Length = 196 Score = 219 bits (558), Expect = 5e-56, Method: Composition-based stats. Identities = 190/196 (96%), Positives = 194/196 (98%) Query: 1 MTWQSDYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD 60 MTWQ+DYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD Sbjct: 1 MTWQNDYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKD 60 Query: 61 FVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS 120 FVFINL+TDSL+EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS Sbjct: 61 FVFINLNTDSLTEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS 120 Query: 121 RDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 RDIRKEL YVINGRFLRKDIKKDKITDREMEIIRMTAQGM PKSIARIENCSVKTVYTHR Sbjct: 121 RDIRKELAYVINGRFLRKDIKKDKITDREMEIIRMTAQGMLPKSIARIENCSVKTVYTHR 180 Query: 181 RNAEAKLYSKIYKLVQ 196 RNAEAKLYSK+YKLVQ Sbjct: 181 RNAEAKLYSKLYKLVQ 196 >UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=Q1J0X7_DEIGD Length = 228 Score = 175 bits (445), Expect = 6e-43, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 68/207 (32%), Gaps = 31/207 (14%) Query: 12 EVKNHMECQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKD 60 + + + R + KG EL+ + L ++ D Sbjct: 3 DATDALPAHTRPITLLLVDDHPVVRKGTRELLEGEADLRVVGEAESGEEAILKARQLMPD 62 Query: 61 FVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS 120 + +++S ++ I + G ++++ + +A + + G + S Sbjct: 63 VILMDVSMPGMNG-IEATRAIKAERPGVGILVLTSYDDDAYV-FALLEAGAAGYLLKNAS 120 Query: 121 RDIRKELVYVINGR------------------FLRKDIKKDKITDREMEIIRMTAQGMQP 162 D V + +D ++ RE+E++R+ A G Sbjct: 121 EDELLGAVRAVAAGESALHPAVARKVLERFSTHQTPTPPEDALSPRELEVLRVAATGRTN 180 Query: 163 KSIARIENCSVKTVYTHRRNAEAKLYS 189 K IAR + S +TV H N +KL Sbjct: 181 KEIARDLDISPRTVQVHLANIFSKLGV 207 >UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltaproteobacteria RepID=Q2LSF1_SYNAS Length = 217 Score = 166 bits (420), Expect = 5e-40, Method: Composition-based stats. Identities = 34/206 (16%), Positives = 75/206 (36%), Gaps = 34/206 (16%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + + GL L+ + + ++ + + +++S + Sbjct: 2 CVNVLLADDHKIVRDGLRTLLETHGSMNVVAEAENGQKTITLARELHPEIIIMDISMPDM 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + I+ + S + G +V+ ++ + G + + + + + Sbjct: 62 NG-IDATRKITSDLPGIKVIALSMHADRHFV-IGMLEAGASGYLLKDCAFEELVNAIQTV 119 Query: 132 --NGRFLRKDIK------------------KDKITDREMEIIRMTAQGMQPKSIARIENC 171 N +L I ++T RE E++++ A+G+ K IA + Sbjct: 120 LSNHTYLSPTIADIVVKNYVHKAAGTSVVVSSELTPRERELLQLLAEGLSAKQIAANLHV 179 Query: 172 SVKTVYTHRRNAEAKLYS-KIYKLVQ 196 SVKTV THRRN KL + +L++ Sbjct: 180 SVKTVETHRRNITQKLGVGSVAELIK 205 >UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFU8_DESAH Length = 219 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 74/208 (35%), Gaps = 36/208 (17%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 K + + KGL L+ + R +E++ D V +++S L Sbjct: 3 KIKVLVAEDHTIVRKGLCSLLYSEPDIEVVGEAENGREAIKMVEELAPDVVLMDISMPEL 62 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + ++ + ++++++ +E + + G + + + ++ Sbjct: 63 NG-MDATRQLKKKYPDVKILILSMHSTEEYI-FETLRAGASGYLIKRSAPTDLIKAIHAA 120 Query: 132 NGR--FLRKDI--------------------KKDKITDREMEIIRMTAQGMQPKSIARIE 169 + FL I D ++ RE E++++ A+G + IA Sbjct: 121 HAGDCFLSPSISKKVIKNYVQQKQGLSLEPRGLDLLSAREREVLQLIAEGHANREIAGHL 180 Query: 170 NCSVKTVYTHRRNAEAKLYSK-IYKLVQ 196 S KTV HR + + KL +L + Sbjct: 181 YISPKTVEAHRNHIQKKLGLNGTAELTK 208 >UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFI8_DESAH Length = 220 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 77/203 (37%), Gaps = 33/203 (16%) Query: 25 KYIWSPHDAYFYKGLSELI----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSEF 74 + + + A +GL L+ + R K + D V ++++ +++ Sbjct: 4 RILIADDHAIVREGLRVLLERKGLEVPWMAENGRQAVCLAVKFKPDIVIMDITMPNMNGS 63 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGR 134 I + + A+ +V+ ++ + + N+ V + + + + Sbjct: 64 I-ATEKIMQALPRTRVIALSMHADRRYIDRMF-NAGAIAYVLKDSAFAELFDAIQAVGRG 121 Query: 135 --FLRKDIKKD------------------KITDREMEIIRMTAQGMQPKSIARIENCSVK 174 ++ I K +I+ RE E++++ A+G++ + IA S+K Sbjct: 122 KYYISPSIAKTLADSCTSAPDTPQKCPFGRISPREREVLQLIAEGVKTRQIAERLFVSIK 181 Query: 175 TVYTHRRNAEAKLYS-KIYKLVQ 196 TV HRRN KL + L + Sbjct: 182 TVEAHRRNIMNKLMISSVAGLTR 204 >UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR family n=29 Tax=Alphaproteobacteria RepID=Q1GIA7_SILST Length = 233 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 68/200 (34%), Gaps = 26/200 (13%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 N + + +G+ ++ V R E + D + ++L+ Sbjct: 21 NGPIRVLIVDDHPMVAEGIQSILESYGDIEVVGAVSSGREAIARAEALVPDVILMDLNMP 80 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 + ++ +V++++ S + G V + + K + Sbjct: 81 DVGG-LSATEIIQERCPEIRVLILSMHDSPEYIT-TALSHGAVGYVLKDVQPEEIKTAID 138 Query: 130 VI----------NGRFLRKDIKK--DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 + L + + +T RE I+ AQG K +A+ + SV+TV Sbjct: 139 AVMRGEQYLCTGAAGSLSPQSQTSREALTGREQTILLELAQGKSNKEVAQALDISVRTVE 198 Query: 178 THRRNAEAKLYS-KIYKLVQ 196 THR+N + KL L + Sbjct: 199 THRKNIKRKLGISSTAGLTR 218 >UniRef50_P0AGA8 Transcriptional regulatory protein uhpA n=167 Tax=Gammaproteobacteria RepID=UHPA_ECO57 Length = 196 Score = 162 bits (410), Expect = 6e-39, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 68/195 (34%), Gaps = 28/195 (14%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 G ++L+ R L ++S +S Sbjct: 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDIS 61 Query: 73 EFINRDNEWLSAVK-GKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 E LS + G ++++ S AL N+ RG + S D V+ + Sbjct: 62 GL-----ELLSQLPKGMATIMLSVHDSPALVEQ-ALNAGARGFLSKRCSPDELIAAVHTV 115 Query: 132 --NGRFLRKDI-------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRN 182 G +L DI ++D +T RE ++ AQGM K IA S KTV+ HR N Sbjct: 116 ATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRAN 175 Query: 183 AEAKLYSKI-YKLVQ 196 KL +L + Sbjct: 176 LMEKLGVSNDVELAR 190 >UniRef50_C2C4B6 Transcriptional regulator n=1 Tax=Listeria grayi DSM 20601 RepID=C2C4B6_LISGR Length = 214 Score = 161 bits (409), Expect = 9e-39, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 65/197 (32%), Gaps = 32/197 (16%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 K + + A L +I +L +E R D V ++LS Sbjct: 2 KLLIADDHAVVRSALKFMINAQKDMEVIGDAADGTEAFLFIESNRPDIVLMDLSMPPGEN 61 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING 133 + A +V+L+ EA + +G + S ++ + + + G Sbjct: 62 GLLTTKRITEAFPETKVILLTMHDEEAYITQ-ALQAGAQGYIMKNSSEELLLDAIRSVMG 120 Query: 134 --------------------RFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 R + ++++ RE EI+ + A G K IA S Sbjct: 121 GQIIIDPVFNYSSKQIEQLKRADASENIIERLSKREKEILPLIALGYGNKEIAERLFISA 180 Query: 174 KTVYTHRRNAEAKLYSK 190 KTV H+ + KL K Sbjct: 181 KTVEVHKSHIMKKLEMK 197 >UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC-HTH domains) n=7 Tax=Bacteria RepID=B3DW63_METI4 Length = 243 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 75/214 (35%), Gaps = 34/214 (15%) Query: 15 NHMECQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVF 63 ++M + K + A +GL +LI + +EK D V Sbjct: 10 SYMNAGEKVHKVLIVDDHAILREGLIQLINSTPGLSVCGAAKNAHEGFELIEKTMPDVVL 69 Query: 64 INLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDI 123 +++S S + + +A +++++ + A + RG + Sbjct: 70 VDISLPGKSG-LELIKDIHAAYPDIALLVLSMHEESLYAER-VLRAGARGYLMKNEGGQK 127 Query: 124 RKELVYVINGRFLRKDIKK--------------------DKITDREMEIIRMTAQGMQPK 163 + + + + + ++DRE E+ ++ +G + Sbjct: 128 LIAAIQKVLAGGISVSERVANRILQGVSGKRKALSISPIEALSDREFEVFQLIGKGYGSR 187 Query: 164 SIARIENCSVKTVYTHRRNAEAKLYSKI-YKLVQ 196 IA + SVKTV +R + + KLY K +LV Sbjct: 188 QIAEQLSLSVKTVEAYRASIKQKLYLKSGPQLVH 221 >UniRef50_UPI00017452CB response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017452CB Length = 235 Score = 158 bits (399), Expect = 1e-37, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 69/201 (34%), Gaps = 33/201 (16%) Query: 18 ECQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINL 66 + + K + GL +L+ + LE+ + D + +++ Sbjct: 13 DPHSDKKKIAFVDDHTMLRDGLQKLVESQPDLCCYWTASNTQDALQQLEQGKPDMLAVDI 72 Query: 67 STDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKE 126 S + + + L+ +++I+ A + RG V + Sbjct: 73 SLPGRNG-LELIKDALALHPDLPILVISMHDESFYA-QRVLKAGARGYVMKDAESTTLLQ 130 Query: 127 LVYVI--NGRFLRKDI------------------KKDKITDREMEIIRMTAQGMQPKSIA 166 + + GR++ + +++DRE E+ ++ ++G + I Sbjct: 131 AIRNVLEGGRYVSPAMSAQIMEAFSGRGAARPVDGVQRLSDREFEVFQLISEGKSTQQIG 190 Query: 167 RIENCSVKTVYTHRRNAEAKL 187 N SVKTV HR + KL Sbjct: 191 DALNISVKTVEVHRAHIREKL 211 >UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QSJ5_9RHOB Length = 212 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 71/199 (35%), Gaps = 29/199 (14%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 + + + + A G+ + R ++R D + +++S Sbjct: 2 TKPIRVLLADDHALVRDGIRARLNKVPEIEVVGEATNGREAVKLAHELRPDVLLMDVSMP 61 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS-RDIRKELV 128 ++ + E + V++++ + + RG + +S ++ + Sbjct: 62 VMNG-LEAAAEVRKSFPEIAVLILSIYDNSEYV-RGVVQAGARGYILKDISAPEMITAIS 119 Query: 129 YVINGRFLRKDIKKDKI---------------TDREMEIIRMTAQGMQPKSIARIENCSV 173 V +G + + TDRE +++ A+G+ K +A+ SV Sbjct: 120 SVASGGYYFSSAVGPTLVGTATSAPIEDPYGLTDRERQVLTAIAKGLPNKEVAKSLGISV 179 Query: 174 KTVYTHRRNAEAKLYSKIY 192 +TV +HR N K+ +K Sbjct: 180 RTVESHRLNLREKVGNKNA 198 >UniRef50_B7GL14 DNA-binding response regulator, NarL family (REC-HTH domains) n=30 Tax=Bacillales RepID=B7GL14_ANOFW Length = 260 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 76/233 (32%), Gaps = 46/233 (19%) Query: 2 TWQSDYSRDYEVKNHMECQ---NRSDKYIWSPHDAYFYKGLSELI-----------VDID 47 TW D D + E + + + F +G+ ++ Sbjct: 12 TWTRDDCDDAHSDSVSEKERGTTMKTRIVLIDDHKLFREGIKRILDFEQDFEVVAEGSDG 71 Query: 48 RLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYY 107 +E+ + D V ++++ ++ + + + A +V++++ E+ + Sbjct: 72 DEALALVERYKPDVVIMDINMPHVNG-VEATRQLIEAYPDTKVIILSIHDDESYVMH-AL 129 Query: 108 NSNIRGVVYAGLSRDIRKELVYVI--NGRFLRKDIKKDK--------------------- 144 + G + + D E V V+ G +L + + Sbjct: 130 QTGAMGYLLKEMDADALIEAVRVVAEGGSYLHPKVTHNLVKEYRRLVAGEGGGKEKQNQD 189 Query: 145 -------ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 +T RE E++++ A G K IA S KTV H N KL Sbjct: 190 VCRPYHLLTRRECEVLQLLADGKSNKGIADALYISEKTVKNHVSNILQKLNVN 242 >UniRef50_A7HA46 Two component transcriptional regulator, LuxR family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HA46_ANADF Length = 212 Score = 156 bits (395), Expect = 4e-37, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 76/204 (37%), Gaps = 36/204 (17%) Query: 27 IWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSEFI 75 + + +G+ L+ R +++R D V ++++ L+ + Sbjct: 1 MVADDHEVVRRGVRALVESHPGWTVCGEASNGREAVRLAQELRPDVVVLDVTMPELNG-L 59 Query: 76 NRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRF 135 E ++V +++L+ S+ L ++ RG V + + + ++ Sbjct: 60 EATREIRASVPDTEIILLTVHDSDQLLGQ-ALDAGARGYVLKEDAARHLVDAIDALSKHA 118 Query: 136 ----------------------LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 + + + +T RE E++R+ AQG + +A + S Sbjct: 119 PYVPSRAAERPGNAAAQERNTVVSRGGRVTSLTQREREVLRLLAQGDSNREVAGQLSISA 178 Query: 174 KTVYTHRRNAEAKLYS-KIYKLVQ 196 KTV THR N KL + I LV Sbjct: 179 KTVETHRANVMRKLGASSIVDLVH 202 >UniRef50_D1AAU8 Two component transcriptional regulator, LuxR family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAU8_THECD Length = 220 Score = 156 bits (394), Expect = 4e-37, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 65/200 (32%), Gaps = 31/200 (15%) Query: 19 CQNRSDKYIWSPHDAYFYKGLSELI----------VDIDRLIYLSLEKIRKDFVFINLST 68 N + + + + F +GL L+ + +++ D V ++L Sbjct: 5 PGNEAIRVLITDDHPVFRQGLRGLLEALGVEVVGEAESGPQAVQLAAELQPDVVVMDLHM 64 Query: 69 DSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKE-- 126 + I V+++ + + + + + RG + + Sbjct: 65 PGGNG-IEATRTITRTSPRIGVLVLTMFRDDD-SVFAAMRAGARGYLLKESGAEEIARAV 122 Query: 127 --------------LVYVINGRFLRKDIKKDK---ITDREMEIIRMTAQGMQPKSIARIE 169 V+ D K+ +T+RE E++++ AQG IA+ Sbjct: 123 RAVAAGEAIYGPEIARRVLTYFADMPDPKQTAFPELTEREREVLQLIAQGRSNGEIAQTL 182 Query: 170 NCSVKTVYTHRRNAEAKLYS 189 S KTV H N KL+ Sbjct: 183 FLSPKTVRNHVSNIFMKLHV 202 >UniRef50_Q313W8 Two component transcriptional regulator, LuxR family n=3 Tax=Proteobacteria RepID=Q313W8_DESDG Length = 223 Score = 155 bits (392), Expect = 7e-37, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 35/204 (17%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 I + +GL L+ ++ ++ + + V +++S + Sbjct: 5 YSLIIAEDHTLLREGLKSLLQSVPHLIVTGEASDGQMAVDLCDRNQPELVLMDISMPRMD 64 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 + +V+++ + Y + G V S D V + Sbjct: 65 G-VQATRLIKKRHPEVRVLVLTVHGAGEYV-YAALAAGADGYVLKDASNDEFILAVESVL 122 Query: 133 GR--FLRK-------------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENC 171 G +L + +T RE EI ++ A+G + + IA + Sbjct: 123 GGKIYLSPGVSDAVVKGYLNDARGQSVSSSWETLTPREQEIFQLVAEGYKNREIAEMLVV 182 Query: 172 SVKTVYTHRRNAEAKLYS-KIYKL 194 SVKTV HR N KL +L Sbjct: 183 SVKTVEKHRSNLMQKLGVHSAAEL 206 >UniRef50_D2QQM0 Two component transcriptional regulator, LuxR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQM0_9SPHI Length = 214 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 31/208 (14%) Query: 17 MECQNRSDKYIWSPHDAYFYKGLSELIVD------------IDRLIYLSLEKIRKDFVFI 64 ME +S + + F GL L+ R + + +++ D + + Sbjct: 1 MEPITKSTTILIADDHQLFSDGLRTLLTTAHSPFTVIGQVYDGRDVIPVVHQLQPDLILL 60 Query: 65 NLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRD-I 123 +++ + ++ + VV+I + L + G + S D + Sbjct: 61 DINLPHRNG-VDIARQLRREFPHVGVVIITMYSYQKLTEE-LRAVGVAGYLLKSASPDRL 118 Query: 124 RKELVYVING---------------RFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARI 168 L V++G R +K+ +T RE+EIIR+ G+ IA Sbjct: 119 MTCLTSVVSGKPFFDQLPNELAIDPRETDPFVKQFSLTPREIEIIRLIRNGLSTSQIAER 178 Query: 169 ENCSVKTVYTHRRNAEAKLYS-KIYKLV 195 S +T+ THR+N KL + L+ Sbjct: 179 LFLSAETIKTHRKNIYFKLGINSVAALI 206 >UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y661_9BACT Length = 216 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 77/206 (37%), Gaps = 34/206 (16%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSL 71 S + + + F +GL EL+ D + E+++ D ++++ L Sbjct: 2 SIRVLLADDHEMFLEGLRELLGKADGIELAGLARDGAEAVAAAERLQPDVALMDMTMPRL 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + I + + G +V++++ + L + RG V S + + Sbjct: 62 NG-IQATQKIAAGSPGTKVLVLSMHGDKNLIVES-LKAGARGYVLKECSSQELCLAIQTV 119 Query: 132 --NGRFLRKDIKKD------------------KITDREMEIIRMTAQGMQPKSIARIENC 171 +L I +++RE++++++ +G K IA + Sbjct: 120 ANGQYYLTPAILSTLIGDYLRLTENEEQGSDCPLSERELDVLKLLVKGCNAKQIAEQLSI 179 Query: 172 SVKTVYTHRRNAEAKLYS-KIYKLVQ 196 S TV THRR+ KL + +L + Sbjct: 180 SKNTVDTHRRHILDKLGCNSMAELTR 205 >UniRef50_Q01NC6 Two component transcriptional regulator, LuxR family n=3 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NC6_SOLUE Length = 216 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 73/207 (35%), Gaps = 35/207 (16%) Query: 22 RSDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDS 70 ++ + + + KGL L+ R + D V ++++ Sbjct: 2 KTIRILLADDHTVVRKGLRLLLESHPGFQVIGDAADGRDAVSLAGEHTPDVVVMDVAMPG 61 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSR-DIRKELVY 129 L+ I + + + +V ++ E+ + R + + D+ ++ Sbjct: 62 LNG-IEAARQISAKLPHTAIVFLSMHSDESYVLK-ALKAGARAYLLKDSAEHDLIAAVIA 119 Query: 130 VINGRFLRK--------------------DIKKDKITDREMEIIRMTAQGMQPKSIARIE 169 V G+ + + +T RE E++++ A+G K +A I Sbjct: 120 VSEGKAFFSPAISKMLVEDYMRQMQERQIEDSYELLTTREREVLQLLAEGKNNKEVAAIL 179 Query: 170 NCSVKTVYTHRRNAEAKLY-SKIYKLV 195 N S+ TV THR N KL +L+ Sbjct: 180 NLSLYTVETHRGNILQKLNLHSGAELI 206 >UniRef50_B8D0J2 Two component transcriptional regulator, LuxR family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0J2_HALOH Length = 211 Score = 153 bits (388), Expect = 3e-36, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 68/200 (34%), Gaps = 29/200 (14%) Query: 22 RSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDS 70 + K + + +G+ +L+ + D V ++L+ Sbjct: 2 KPTKVLVADDHDLVREGICKLLELYEDIKVVGEAGDGLETVKGVRDHFPDLVLLDLNMPR 61 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 + I + G +V+++ E Y S G + + + K + Sbjct: 62 MGG-ITAIKKIKEISPGIKVLILTIHDEEEYV-YEVIRSGAEGYIQKDVKPEELKRAIDK 119 Query: 131 ING------RFLRKDIKKD--------KITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 + R ++++ +++ RE E++ + AQGM K IA+ S KTV Sbjct: 120 VIKGDKVFPRSTENEVREVVNEKYEVCELSSREQEVLELLAQGMSNKQIAQELFISEKTV 179 Query: 177 YTHRRNAEAKLYSKIYKLVQ 196 H N KL + Q Sbjct: 180 KNHVSNILRKL--SVNDRTQ 197 >UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAQ5_9BACT Length = 229 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 75/207 (36%), Gaps = 34/207 (16%) Query: 22 RSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDS 70 ++ K + +GL ++I + ++ + D V +++ Sbjct: 11 KATKILLVDDHPMMREGLRQIIGNEIDLAVCGEAENAFQALELVKSEKPDLVLADITLPD 70 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYA-GLSRDIRKELVY 129 + + + + V++I+ A + RG + + I + + + Sbjct: 71 KNG-LELLKDLQAQHPKLPVLVISMHDEALYAER-VLRAGGRGYIMKHEGGKKIMQAIRH 128 Query: 130 VINGRFL-------------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIEN 170 V++G+ + +TDRE E+ R+ +G+ K IA + Sbjct: 129 VLSGQIFVSEKMSARILELFSGHGTQAASSPIENLTDREFEVFRLIGEGLSTKEIAANMH 188 Query: 171 CSVKTVYTHRRNAEAKLYSKI-YKLVQ 196 S KTV HR N + KL K +L++ Sbjct: 189 VSAKTVEVHRMNIKTKLGLKTAAELIR 215 >UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q01NJ8_SOLUE Length = 224 Score = 153 bits (387), Expect = 3e-36, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 66/208 (31%), Gaps = 36/208 (17%) Query: 23 SDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSL 71 K + + F +G+ L+ +++R D V +++ + Sbjct: 3 KTKILLTDDHTLFRQGVRTLLAAEADMEVAGEAANAMDAVALAQQLRPDVVLMDIGMAGM 62 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 S F +V+ ++ E + G + D + + Sbjct: 63 SSF-EATRLIRKERPEVKVIFLSMYDDEDYLAECV-DMGANGYILKDSPADQLITAIREV 120 Query: 132 --NGRFLRK--------------------DIKKDKITDREMEIIRMTAQGMQPKSIARIE 169 G +L + +T RE EI++M A+G K IA Sbjct: 121 QRGGSYLSPRLLSRLVDDFRLQGRGGGTRSPRFGTLTKREREILKMLAEGKSVKEIAAFF 180 Query: 170 NCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 SVKTV H+ N KL +LVQ Sbjct: 181 ELSVKTVEAHKFNLMRKLDIHNKAQLVQ 208 >UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y1_9BACT Length = 220 Score = 153 bits (387), Expect = 4e-36, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 75/207 (36%), Gaps = 35/207 (16%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + + + +GL L+ R E + D V ++LS L Sbjct: 6 KTRILLADDHDIVRRGLRTLLELRSDWEICAEASDGRAAVQFAEDLAPDIVILDLSMPEL 65 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYA-GLSRDIRKELVYV 130 + + + +++++ ++E + +RG + RD+ + + Sbjct: 66 NG-LEAARRIAAHCPRSRMLMLTMHETEQFVRE-ALAAGVRGYILKTDAGRDLANAVDAL 123 Query: 131 ING--------------------RFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIEN 170 I G R+ + +T RE EI+++ A+G + + + + N Sbjct: 124 IRGETFFASRLAATIYAAEFAGMGRRRRSKSQAGLTPREREILQLLAEGRKNRDVGKALN 183 Query: 171 CSVKTVYTHRRNAEAKLYS-KIYKLVQ 196 SVKT THR AKL + LV+ Sbjct: 184 ISVKTAETHRARIMAKLGIDSVADLVR 210 >UniRef50_Q13QW9 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderia RepID=Q13QW9_BURXL Length = 220 Score = 153 bits (386), Expect = 5e-36, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 29/194 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSLS 72 + A +G L+ Y +R D V +++S S Sbjct: 6 ISVLLVDDHAVVREGYRRLLELNADVHVCGEAADAAQAYQRFCALRPDVVVMDVSLPGAS 65 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 I L+ +V++ + + ++ G V + D+ E V I Sbjct: 66 G-IEAMRRMLAREPDARVLIFSVHEEAIFVRR-ALDAGALGYVTKASAPDVLVEAVRTIA 123 Query: 133 GR--FLRKDI--------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 R +L DI +++ RE E++R+ QG SIA S KTV Sbjct: 124 RRAGYLSPDISQALALRNAFSEGPPGRQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTV 183 Query: 177 YTHRRNAEAKLYSK 190 H+ K + Sbjct: 184 ANHQSVIRQKFGAD 197 >UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q485W6_COLP3 Length = 215 Score = 152 bits (385), Expect = 5e-36, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 70/194 (36%), Gaps = 28/194 (14%) Query: 28 WSPHDAYFYKGLSELIV-----------DIDRLIYLSLEKIRKDFVFINLSTDSLSEFIN 76 GL + D +++ D + +++S +++ I+ Sbjct: 13 IVDDHPMVQGGLKACLSFYDDIIIVGSTDDGSDALNKAIELKPDVILMDISMPTMNG-ID 71 Query: 77 RDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL-SRDIRKELVYVINGRF 135 + +V++++ + + G + S +I + V NG+ Sbjct: 72 ATEIITEQLPETKVLILSMHSNPEFV-KSAIQAGAVGYLLKDTTSEEIYYAIKAVANGKT 130 Query: 136 LRKDI-------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRN 182 + +K+T RE ++ A+G K IA+I N S +TV HRRN Sbjct: 131 HFSSSIAKLLIDNPVNTNESEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEAHRRN 190 Query: 183 AEAKLY-SKIYKLV 195 + KL + KL+ Sbjct: 191 MKTKLGIHSLAKLI 204 >UniRef50_C1A9U5 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9U5_GEMAT Length = 223 Score = 152 bits (384), Expect = 7e-36, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 64/207 (30%), Gaps = 33/207 (15%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 + + + A +GL ++ R + D V ++++ Sbjct: 8 TAPIRVLIADDHALVREGLRYVLDADPGIEVVGEASNGRTAVDLALQHVPDVVVLDITMP 67 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 S + A+ +V+L++ G + + + + + Sbjct: 68 EESG-LKAAARLREALPDTRVLLLSMHDQGEYVREG-MRIGTHGYLLKDSAGEELRAAIR 125 Query: 130 VINGR-------------------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIEN 170 ++ + D +T RE +++ A+G+ K+IA Sbjct: 126 AVHAGGTFFSPAVVRRLTSTEVVSEGAPAAQLDLLTPRERDVLAGVARGLTNKAIAAELG 185 Query: 171 CSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 S +TV HR + KL + L + Sbjct: 186 ISRRTVEAHRESLMRKLQIHSVAGLTR 212 >UniRef50_Q0A525 Two component transcriptional regulator, LuxR family n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A525_ALHEH Length = 214 Score = 152 bits (384), Expect = 7e-36, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 67/196 (34%), Gaps = 26/196 (13%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + A G L+ D Y + + R D V +++S +S Sbjct: 11 TLLLVDDHAVVRAGYRRLLEQASRCWQVTEADSGESAYRACARERFDVVVMDISLPGISG 70 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--VI 131 + +V++ + + A + G + + ++ E V Sbjct: 71 -LETLARLQRRAPEIRVLIFSMHEEPVFAEQ-ALSGGAAGYITKSSAPEVLVEAVQRIAA 128 Query: 132 NGRFLRKDIK----------KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRR 181 G +L D++ ++ RE EI R+ A+G IAR+ N S KTV + Sbjct: 129 GGHYLGPDVRCRHGDADTAGLQSLSAREFEIFRLLAEGCGSAEIARLLNISYKTVANYGS 188 Query: 182 NAEAKLYS-KIYKLVQ 196 KL + ++ + Sbjct: 189 GIREKLALNNVAEMTR 204 >UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11VH7_CYTH3 Length = 220 Score = 151 bits (383), Expect = 9e-36, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 73/213 (34%), Gaps = 40/213 (18%) Query: 22 RSDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDS 70 + + G+ + D ++++++ D V ++++ Sbjct: 2 KKINILLVDDHTIVRDGIKATLKDQKNFHIVGEAANGLDGIEAVKQLKPDVVIMDITMPE 61 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELV-- 128 +S I + +V++++ +E + G + + +D + + Sbjct: 62 MSG-IEAADVISKKYPDSKVLILSMHDNETYILKSV-EAGAYGYLLKDVDKDEFIKAITA 119 Query: 129 -------------YVINGRFLRKDIKKDK-----------ITDREMEIIRMTAQGMQPKS 164 V+ +L K + D +T RE I++M G + Sbjct: 120 VYNGDKYFNTAISSVLVSGYLSKVKQTDSIQSGYSNDEYELTKREKGILKMITDGKNNRE 179 Query: 165 IARIENCSVKTVYTHRRNAEAKLYSKIY-KLVQ 196 IA S++T+ THR N KL K +LV+ Sbjct: 180 IADGLGISIRTIETHRANIMKKLKVKNAVELVR 212 >UniRef50_A6GFX0 Two component transcriptional regulator, LuxR family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GFX0_9DELT Length = 220 Score = 151 bits (383), Expect = 9e-36, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 35/209 (16%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 ++ + + +GL L+ V R + E++ D V ++++ Sbjct: 2 TQTVRVLLVEDHTIVREGLKALLTATEDLEVVGEVADGRAAVEAAERLAPDVVVMDINMP 61 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 L + E V +V++++ E + G + G + Sbjct: 62 KLDG-VGATREIREKVNAPRVLILSMYDGEEYV-RPAIRAGASGYLLKGSGLSDLVTAIR 119 Query: 130 VINGR--FLRKDIK-------------------KDKITDREMEIIRMTAQGMQPKSIARI 168 + G F + D +T RE E++ + +G IA+I Sbjct: 120 EVAGGNAFFSPTVAKILLQESRGERSVKEAPDPADSLTKREREVLTLVGEGKSSPEIAKI 179 Query: 169 ENCSVKTVYTHRRNAEAKLYS-KIYKLVQ 196 SVKT+ HR AKL + LV+ Sbjct: 180 LGLSVKTIEGHRGRIMAKLGVHNVAGLVR 208 >UniRef50_Q2BNR9 DNA-binding response regulator, LuxR family protein n=2 Tax=Neptuniibacter caesariensis RepID=Q2BNR9_9GAMM Length = 214 Score = 151 bits (383), Expect = 1e-35, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 68/200 (34%), Gaps = 30/200 (15%) Query: 25 KYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLSE 73 K + + A +G + L+ Y + D V ++++ +S Sbjct: 2 KIVIADDHAVVRQGYASLLSAMLAPCEVLEAGNGDQAYSLCQSDSPDVVIMDVNMQGISG 61 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING 133 I L +++ + + + +G + + +I E V ++ Sbjct: 62 -IEATRRILQKKPDTRILFFSMYDEIPVVTQ-ALEAGAKGYITKSCTPEILIEAVKKVSA 119 Query: 134 RFL----------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 L +KD + ++T RE EI M AQG K I+ S KTV Sbjct: 120 GQLYVEHELAMRLAVSRPEQKDKRLKEMTQREFEIFVMLAQGSNVKEISEQLCISSKTVS 179 Query: 178 THRRNAEAKLYS-KIYKLVQ 196 + ++KL +LV Sbjct: 180 NYTAILKSKLNIGSTAELVH 199 >UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=Thermomicrobia (class) RepID=B9L2G4_THERP Length = 246 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 66/199 (33%), Gaps = 32/199 (16%) Query: 22 RSDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDS 70 R + + F +GL +LI + + +++ D V ++++ Sbjct: 26 RRIRVLIVDDHDLFREGLRQLIETDPAIEVVGEAANGQDALKMVAELQPDVVLMDINMPG 85 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 + I + + V+++ E + + R + + ++V Sbjct: 86 MDG-IRATEAIVQQYRHVHVLMLTMYDDEEYVLH-AIRAGARSYLVKNSKPEELLRAIHV 143 Query: 131 I--NGRFLRKD-----------------IKKDKITDREMEIIRMTAQGMQPKSIARIENC 171 G + D + ++DRE+ ++R+ AQG + IA N Sbjct: 144 AAEGGATIDPDLAPILMREYQRLLTKAPTRGQDLSDRELTMLRLLAQGYNNRQIADALNL 203 Query: 172 SVKTVYTHRRNAEAKLYSK 190 + TV + KL + Sbjct: 204 AESTVKNNLSALFQKLGVR 222 >UniRef50_C8WS10 Two component transcriptional regulator, LuxR family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WS10_ALIAD Length = 224 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 65/200 (32%), Gaps = 28/200 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIV-----------DIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + A +GL ++ + K R D + +++ Sbjct: 4 TRVVIVDDHALVRQGLRLILHGVAGIEVVGECSCGEDALKAAVKDRPDVMLMDVHMPQGL 63 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--- 129 + I +V+++ ++ + G+V+ + Sbjct: 64 DGITTARHLRQIAPQVRVIMLTMFDDRVHVEKM-LDAGVSGIVFKHDDSSEIVAAIQHGQ 122 Query: 130 ------------VINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 N + ++++ RE E++ + AQG + +A + SVKTV Sbjct: 123 PGHPYLSRRWGQRANAETVSPSRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVE 182 Query: 178 THRRNAEAKLY-SKIYKLVQ 196 THR++ ++ LV+ Sbjct: 183 THRQHIMRRIGLHSRAALVR 202 >UniRef50_B1KE04 Two component transcriptional regulator, LuxR family n=2 Tax=Alteromonadales RepID=B1KE04_SHEWM Length = 206 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 74/198 (37%), Gaps = 28/198 (14%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + F +GL + + + + D V +++S ++ Sbjct: 2 RIFIVDDHPIFREGLIARLSMDDDFVIVGQAANGKEALEKMPNLMPDIVLMDISMPEMNG 61 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI-- 131 ++ + ++++++ + N +RG +S + VI Sbjct: 62 -MDAAEIFKDKFPEIKILILSMHDDKEYV-LSVLNRGVRGYALKDISAAEMFYALRVIHN 119 Query: 132 NGRFLRKDI------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTH 179 G + + I K +T RE ++R+ A G+ K +AR + SV+T+ TH Sbjct: 120 GGIYYSRAISDLLVQSSQEPDKNTVLTTREQTVLRLLASGLNNKELARELDISVRTIETH 179 Query: 180 RRNAEAKLYSKI-YKLVQ 196 RRN + KL K LV+ Sbjct: 180 RRNIKDKLAIKTSAGLVR 197 >UniRef50_B8FDP3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDP3_DESAA Length = 219 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 62/195 (31%), Gaps = 33/195 (16%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 K + + A KGL LI D K + D + ++LS ++ Sbjct: 6 IKILITEDHALVRKGLKSLISSRSEFQVVGEADNGLAAIEMTRKCKPDLILLDLSMPKMN 65 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + + ++++I S+ G + G + I Sbjct: 66 G-LATMRQLKKERPEVKILVITMHASQDYL-IPALKEGADGYLLKGDDPQELFMAIRAIM 123 Query: 132 -NGRFLRKDIKKD------------------KITDREMEIIRMTAQGMQPKSIARIENCS 172 +L D+ +T RE E+ ++ A+G + IA + S Sbjct: 124 DGKAYLSSDLSGQLIHSVINPDTREAADPLASLTQREKEVFQLVAEGNTNQQIADLLFIS 183 Query: 173 VKTVYTHRRNAEAKL 187 KTV HR N KL Sbjct: 184 PKTVDKHRTNLMKKL 198 >UniRef50_C0Q9H4 Two component transcriptional regulator (LuxR family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9H4_DESAH Length = 217 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 79/207 (38%), Gaps = 34/207 (16%) Query: 22 RSDKYIWSPHDAYFYKGLSELIVDI----------DRLIYLSLEKIRK-DFVFINLSTDS 70 ++ + + + A +G+ ++I D + L+L + D V +++S Sbjct: 2 KACRVVIADDHAMLRRGICQVIETQEGVSVVGEVGDGIELLNLLSTQPADLVILDISMPK 61 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYA-GLSRDIRKELVY 129 +S I + + G +++ ++ K Y +++ G + +I + Sbjct: 62 MSG-IEAAKKIRATYPGIKILFLSMHKRNEYL-YHAFSAGANGYLLKEDTDTEILTAMDT 119 Query: 130 VINGRFLRKDI-------------------KKDKITDREMEIIRMTAQGMQPKSIARIEN 170 ++ G+ I ++ RE E++ + A+G K IA I Sbjct: 120 ILEGKAFLSSIFTKDMPDILTDMVKNGSSFPGGTLSPREEEVLTLLAEGKSNKKIADILC 179 Query: 171 CSVKTVYTHRRNAEAKLYSK-IYKLVQ 196 S +TV HR + +L + + L++ Sbjct: 180 ISTRTVEHHRASIMKRLDLRTLADLIK 206 >UniRef50_C7RBI1 Two component transcriptional regulator, LuxR family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBI1_KANKD Length = 212 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 65/204 (31%), Gaps = 33/204 (16%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + +GL L+ + R I++S L+ Sbjct: 2 IRVMLADDHTILRQGLVSLLSKDADCTVVAEASNGLEAVEKALETRPQVAVIDISMPELN 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--- 129 + + +++++ + + + + G + + + + V Sbjct: 62 G-MEVVKRIHDKLPECKILVLTMHEEQEYVIHMV-RAGASGYLLKDSASEELIDAVKALA 119 Query: 130 ------------VINGRFLRKDIK----KDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 V+ ++ + D + +T RE E+ + G K IAR + SV Sbjct: 120 TGKTYYSQYAASVLATQYSQPDKEWQDPYKNLTQREREVFHLVVDGKTTKDIARTLDISV 179 Query: 174 KTVYTHRRNAEAKLYSK-IYKLVQ 196 KT HR KL +LV+ Sbjct: 180 KTAENHRGKVLDKLGVSNTAELVR 203 >UniRef50_C7MN84 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MN84_CRYCD Length = 215 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 64/205 (31%), Gaps = 33/205 (16%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + A +G + +I + Y + ++ + +++S Sbjct: 2 IDVAIADDHAVVRQGFAFIINSQCDMRVVGEAADGKEAYDLVARVEPHVLLLDISMPPGE 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 + +++++ + Y G V S ++ + + Sbjct: 62 NGLIACERISCDFPSTRIIILTMFEETDYLFYT-LRGGAAGYVLKNSSTEVLLGAIRKVA 120 Query: 133 GR--FLRKDIKKD------------------KITDREMEIIRMTAQGMQPKSIARIENCS 172 ++ ++ + +++ RE EI + AQG K A S Sbjct: 121 TGETYIEPNMAQALSGKLHGQSGVAEKNPYHELSSREFEIFSLLAQGYTNKEAADKLFIS 180 Query: 173 VKTVYTHRRNAEAKLYS-KIYKLVQ 196 VKTV THR AKL +LV Sbjct: 181 VKTVETHRSKIYAKLGVNSRAELVH 205 >UniRef50_B6A2W0 Two component transcriptional regulator, LuxR family n=47 Tax=Proteobacteria RepID=B6A2W0_RHILW Length = 223 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 27/199 (13%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDIDRLIYLS-----------LEKIRKDFVFINLSTDSL 71 + + + GL ++ D + +I+ V ++++ L Sbjct: 6 KIRVLLIDNHPLVLDGLKAVLETFDHIEVAGTAGLAQTGLDIARQIQPQVVLMDINMPKL 65 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 S I+ + + +VV+++ S + G V +S D + + Sbjct: 66 SG-IDAIELFRNEFPEIRVVMLSMHDSREYISSSVM-HGAAGYVLKDVSTDEIVAAIETV 123 Query: 132 --NGRFLRK-----------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 G + + D +T RE +I+ + G + IA + S T T Sbjct: 124 ADGGTYFSSGVFDALMGERAEEGSDPLTPREHDILGLIVAGRSNREIAEVLGISSATAET 183 Query: 179 HRRNAEAKLY-SKIYKLVQ 196 HR+N + KL + L++ Sbjct: 184 HRKNLKKKLGIATTAGLIR 202 >UniRef50_D2BDI1 Response regulator receiver protein n=8 Tax=Actinomycetales RepID=D2BDI1_STRRD Length = 227 Score = 149 bits (378), Expect = 3e-35, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 59/200 (29%), Gaps = 30/200 (15%) Query: 18 ECQNRSDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINL 66 E + + GL L+ + + D V ++L Sbjct: 13 ESIGEPIRVLLVDDHPLLRHGLRALLEQVGGAEVVGEAGDGEEAIALVLSLNPDVVVMDL 72 Query: 67 STDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKE 126 ++ I + V+++ + +A + + + RG V G + Sbjct: 73 VMPGVTG-IEATRTLIDRRPDLGVLVLTMSEDDA-SVFAALRAGARGYVLKGADGNDFIA 130 Query: 127 LVYVINGRFL-----------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIE 169 V + + ++T RE EI+ + A G IAR Sbjct: 131 AVRAVARGEAVYGPAVARRIRRFLTTGPESGPFPELTQREREILDLLASGKSNAEIARRL 190 Query: 170 NCSVKTVYTHRRNAEAKLYS 189 S KTV H + AKL Sbjct: 191 FLSQKTVKNHLTSIFAKLQV 210 >UniRef50_A0L9F1 Two component transcriptional regulator, LuxR family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9F1_MAGSM Length = 206 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 71/199 (35%), Gaps = 28/199 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTDSLS 72 + I + F +GL+ L+ + + D +++S L+ Sbjct: 2 IRIIMADDHTIFRQGLAHLLSAHQELEIVGEAGRGDDALQLIRDLNPDVALLDISMPGLN 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAG-LSRDIRKELVYVI 131 ++ + + +++L+ LA + G V ++ ++ V Sbjct: 62 G-LDVVKRVVEEKRPTRLLLLTMHDDPTLAIK-AEQAGALGYVVKDNAFSELLDAILAVA 119 Query: 132 NGRFLRKDIKKDK-------------ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 G+ ++ +K ++ RE E++R+ A G K IAR S KTV T Sbjct: 120 AGKRFVSEVVAEKVNELERLDDLPVQLSPREKEVVRLVADGQTNKEIARSLGISPKTVDT 179 Query: 179 HRRNAEAKLY-SKIYKLVQ 196 HR KL +V+ Sbjct: 180 HRTRLMRKLNLHTTADVVR 198 >UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacillales RepID=C0ZDE8_BREBN Length = 214 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 68/202 (33%), Gaps = 30/202 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + KGL L+ L +++ D V ++LS + Sbjct: 2 IRVLLVDDHTMIRKGLRVLLESYSQIKIVGESHTGNDAILKANQLKPDVVLMDLSLPNGL 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELV-YVI 131 + E + ++V++ E G + ++ + + V Sbjct: 62 DGFTASKEIRKSNPLVKIVILTMHDEEIFV-QEAITVGAHGYILKNSHGELLFQAIVEVY 120 Query: 132 NGR--------------FLRKDIKK--DKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 G+ +LR D K +T RE E++R+ G K +A SVKT Sbjct: 121 RGKCFYKTSVSQEIINLWLRSDAKTLPSVLTLREKELVRLIVLGYSNKEMADKLLISVKT 180 Query: 176 VYTHRRNAEAKLYSKIY-KLVQ 196 V H+ N KL +L+Q Sbjct: 181 VENHKTNIMQKLGLDSKHQLIQ 202 >UniRef50_A1ATT6 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ATT6_PELPD Length = 203 Score = 149 bits (376), Expect = 6e-35, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 65/196 (33%), Gaps = 25/196 (12%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + F +GL L+ + + D ++++ L Sbjct: 2 IRVLIADDHVMFRQGLINLLTTAEDIHIAAECGDGATALELIRSLEPDIAVLDITMPKLD 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 I+ + + +++ + ++ G + + + + + Sbjct: 62 G-ISITRAMGNLGLATRAIILTMHDDPLMYGR-AVSAGAHGFILKDDAYEELLSALRTVA 119 Query: 133 GR-----------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRR 181 + + ++T+RE EI+ + A G + IA+ S+KTV HR Sbjct: 120 AGGTAISRAIQHAAIEPEPPVAELTEREREILGLIAHGCTNRMIAQHLGISIKTVNNHRT 179 Query: 182 NAEAKLY-SKIYKLVQ 196 N KL +LV+ Sbjct: 180 NLMGKLNLHSTAELVR 195 >UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=Q2RMH6_MOOTA Length = 221 Score = 148 bits (375), Expect = 7e-35, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 35/208 (16%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDIDRLIY-----------LSLEKIRKDFVFINLSTDSL 71 + + + A +GL L+ + E+ R + V ++L + Sbjct: 2 AIRVMLVDDHALVREGLRALLEREGDIEVVGETGSAAGVLALAEESRPEVVVMDLQLGAG 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + E + +VV+++ E L + S RG V + + ++ Sbjct: 62 RNGVEATRELVEKKPEIKVVILSMYDDEELV-FRALESGARGYVLKRAGIEELTTAIRLV 120 Query: 132 NGR--FLRKDIK--------------------KDKITDREMEIIRMTAQGMQPKSIARIE 169 +L I ++T+RE+E++R+ A+G+ IAR Sbjct: 121 ARGEAYLDPQIARRVIEGLQERLPFTRASRPEGPELTERELEVLRLAAEGLTNAEIARRL 180 Query: 170 NCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 SVKTV HR N KL LV+ Sbjct: 181 VISVKTVQAHRANIMQKLGLHDRVDLVK 208 >UniRef50_B0SY65 Two component transcriptional regulator, LuxR family n=1 Tax=Caulobacter sp. K31 RepID=B0SY65_CAUSK Length = 222 Score = 148 bits (375), Expect = 7e-35, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 71/207 (34%), Gaps = 37/207 (17%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + + + GL E + R +++ D + +++S LS Sbjct: 8 TILLADDHSIVRAGLREALESQPGWTICGEASNGRDAVRMAKELVPDVMILDISMPDLSG 67 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY---- 129 I + ++++ SE L ++ RG V S D V Sbjct: 68 VIVA-RDVRKLKTHTELLIFTMHDSEQLVRE-VLSAGARGFVLKSASTDNIIAAVASLLN 125 Query: 130 -----------VINGRFLRKD--------IKKDKITDREMEIIRMTAQGMQPKSIARIEN 170 + +L + +T RE+ I+++ A+ K IA + + Sbjct: 126 HKPYFCPGITDTVLRGYLSPGGHALGELIEGAETLTTRELLIVQLLAESRSNKVIASMLD 185 Query: 171 CSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 SVKTV +HR N KL + +V+ Sbjct: 186 ISVKTVESHRGNIMRKLGAHSLADIVR 212 >UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteria RepID=C1F9F6_ACIC5 Length = 213 Score = 148 bits (375), Expect = 8e-35, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 65/193 (33%), Gaps = 23/193 (11%) Query: 19 CQNRSDKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLS 67 + + + +GL L+ + + + D ++L Sbjct: 5 THTATIRILVVDDHHIVRQGLVALLNTLPGFEVIAEAGDGVEAIALHREHQPDITIMDLR 64 Query: 68 TDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKEL 127 ++ + G ++V++ + Y + RG + G+ D Sbjct: 65 LPRMNG-VEAITRIREESPGARIVVLTTFDGDEDI-YRALQAGARGYLLKGMDADDLTAA 122 Query: 128 VYVINGR----------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 + ++ L + + ++T RE++++R+ QG + IA + S TV Sbjct: 123 IRSVHAGKSRIPTVVAERLAERMSGSELTARELDVLRLIVQGRSNREIAADLHISEATVK 182 Query: 178 THRRNAEAKLYSK 190 TH N +KL Sbjct: 183 THINNLLSKLGVS 195 >UniRef50_A0NNP3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNP3_9RHOB Length = 205 Score = 148 bits (375), Expect = 8e-35, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 64/193 (33%), Gaps = 29/193 (15%) Query: 27 IWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSEFI 75 + + G+ + R +R D + +++S ++ + Sbjct: 1 MLADDHELVRDGIRARLQKVADLEVVGEATNGREALTLAHDLRPDVLLMDVSMPVMNG-L 59 Query: 76 NRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELV-YVINGR 134 + + V++++ + + RG + +S + V +G Sbjct: 60 EAATQMRKLLPEIAVLILSVYDNPEYV-RGVVQAGARGYILKDISAAEMITAITSVASGG 118 Query: 135 FLRKDIKKDKI---------------TDREMEIIRMTAQGMQPKSIARIENCSVKTVYTH 179 + + TDRE +++ A+G K +A+ SV+TV +H Sbjct: 119 YYFSSAVGPTLVGAGTSAPVEDPYGLTDRERQVLTAIARGQPNKEVAKELGISVRTVESH 178 Query: 180 RRNAEAKLYSKIY 192 R N K+ +K Sbjct: 179 RLNLREKVGNKNA 191 >UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=B1ZVM0_OPITP Length = 219 Score = 148 bits (375), Expect = 8e-35, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 69/204 (33%), Gaps = 34/204 (16%) Query: 25 KYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLSE 73 K + + A G+ L+ R + D ++++ L+ Sbjct: 6 KIVLADDHALVRAGIRTLLEKLPGVTIVGEAGDGRETVTLVHTFAPDIAIMDITMPGLNG 65 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING 133 F + +V++++ +E + G + + + + + Sbjct: 66 F-DATARIAREHPRTKVLILSMHTAEDYVLQ-ALRAGATGYLLKDAATAELQLALNAVRK 123 Query: 134 R--FLRKDI------------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 +L I +T R EI+++ A+G K IA + N SV Sbjct: 124 GETYLSPSISKSVLARFRQQEQDPRAEPTKALTPRMREIVQLIAEGRSTKEIAFLLNLSV 183 Query: 174 KTVYTHRRNAEAKLY-SKIYKLVQ 196 KT+ THR + A+L + +V+ Sbjct: 184 KTIETHRMHLMARLGLHDVAGVVR 207 >UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VTE0_9BACI Length = 219 Score = 148 bits (375), Expect = 9e-35, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 63/201 (31%), Gaps = 35/201 (17%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + + F GL ++ D + D + +++S L Sbjct: 2 KTRIMLVDDHPVFRSGLKHILCTEADYHVIAEADDGESAIEMAAEANPDIIIMDISMPGL 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 I E + +++++ EA ++ G V V ++ Sbjct: 62 DG-IEVTREIKRKIPDIRILMLTMYADEAFLKES-LDAGASGYVLKRAVDTELVHAVKLV 119 Query: 132 NGR------------FLRKDIKKDK----------ITDREMEIIRMTAQGMQPKSIARIE 169 + ++D ++ RE E+++ A G K I+ Sbjct: 120 MNGEHYIYPTLIPKLYHANQPQQDAVSPDSNQAVELSQREQEVLKYIALGYTQKEISTEL 179 Query: 170 NCSVKTVYTHRRNAEAKLYSK 190 S+KTV T+++ K+ SK Sbjct: 180 FISIKTVDTYKKRVMEKIGSK 200 >UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicutes RepID=NREC_STAEQ Length = 218 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 37/208 (17%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 K + + A G S ++ Y + + R D + ++LS Sbjct: 2 KIVIADDHAVVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEHRPDVLILDLSMPPGES 61 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING 133 + ++ + +++++ E + S +G + + V + Sbjct: 62 GLIATSKISESFPDTKILILTMFDDEEYL-FHVLKSGAKGYILKNSPDEQLILAVRTVYQ 120 Query: 134 RFLRKDIKKDK------------------------ITDREMEIIRMTAQGMQPKSIARIE 169 D+K ++ RE+EI+ + A+G K IA Sbjct: 121 GETYVDMKLTTSLVNEFVNQSQTDEVSSSSDPFKILSKRELEILPLIAKGYGNKDIAEKL 180 Query: 170 NCSVKTVYTHRRNAEAKLYSKI-YKLVQ 196 SVKTV H+ + KL K +LV+ Sbjct: 181 FVSVKTVEAHKTHIMTKLNLKSKPELVE 208 >UniRef50_Q021D5 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q021D5_SOLUE Length = 210 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 25/198 (12%), Positives = 59/198 (29%), Gaps = 25/198 (12%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 + + +G ++ + ++ V ++ + Sbjct: 3 EAPISVLLVDDHSLVRRGFRRMLEDDPAIVVVGEAEDGHQAVQLAGELHPRVVVMDFAMP 62 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 S++ + L +++++ + + +RG + V Sbjct: 63 SMNGAV-AARHILRTAPETAILILSMHAEASYV-RTCLEAGVRGYLLKNALDLEMVAAVK 120 Query: 130 VINGRFLRKDIKKDKI-----------TDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 + D + + T RE+E++++ G K IA + + S TV Sbjct: 121 QVAAGKQVLDRRLGALDLPSGAAPAGLTTRELEVLQLIVHGKSNKEIAAVLSLSANTVAV 180 Query: 179 HRRNAEAKLY-SKIYKLV 195 HR N L +LV Sbjct: 181 HRANIMQTLGIHNTAELV 198 >UniRef50_B4DAD9 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAD9_9BACT Length = 237 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 33/197 (16%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + ++ G S ++ EK D V ++L+ Sbjct: 15 KYRLLFVDDHPVVLDGYSLMLKSQPDLDICGLATNAGDAVQLFEKEHPDLVVMDLNLPGR 74 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 S ++ + L+ +V++ + A + +G V S + + + Sbjct: 75 SG-LDLVKDLLALEPSARVLVCSMHDEMLYAERS-LRAGAKGYVTKDCSAALLLTAIRRV 132 Query: 132 NGRFLRKDIKK--------------------DKITDREMEIIRMTAQGMQPKSIARIENC 171 G + + +K++DRE E+ + +G K I N Sbjct: 133 LGGNIHVSERLAVRVLEAFAGARPRGSHSPLEKLSDREFEVFVLFGEGKTAKEIGAKLNL 192 Query: 172 SVKTVYTHRRNAEAKLY 188 S KTV HR + + K+ Sbjct: 193 SPKTVSVHRDHIKQKME 209 >UniRef50_C6E3E1 Two component transcriptional regulator, LuxR family n=4 Tax=Deltaproteobacteria RepID=C6E3E1_GEOSM Length = 223 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 71/209 (33%), Gaps = 37/209 (17%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTDSL 71 + + F +G+ L+ ++++ D V +++S + Sbjct: 3 KKRVLIVDDHPLFREGVKSLVERSANYQAVGEAGCGAEALALAQELKPDLVTMDVSLPDM 62 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYA-------------- 117 S I L ++++++ + + +G V Sbjct: 63 SG-IEVVRGILDLAPETRILMLSMYPKFDYVAE-AFKAGAKGYVVKETTTARLIQGFDAL 120 Query: 118 ---------GLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARI 168 +S+D+ +L +D K +T RE +++R+ A+G + IA Sbjct: 121 CRGEFFVDGQVSQDLVAKLAQGAARDQALQDEKYGLLTPREQQVLRLVAEGSSTRQIAAA 180 Query: 169 ENCSVKTVYTHRRNAEAKLYS-KIYKLVQ 196 S KTV HR N KL +LV+ Sbjct: 181 IELSPKTVENHRTNLMKKLDVHSKMELVK 209 >UniRef50_Q023R1 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023R1_SOLUE Length = 214 Score = 148 bits (373), Expect = 1e-34, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 73/203 (35%), Gaps = 30/203 (14%) Query: 22 RSDKYIWSPHDAYFYKGLSELIV---------DIDRLIYLSLEKIRKDFVFINLSTDSLS 72 R + + A G+ L+ R + + +++ D V +++S L+ Sbjct: 2 RKLRILLGDDHAMILSGIKGLLEGHYEVIGSEKNGRALIETAVRLKPDLVVLDVSMPILN 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 I+ E A+ +++ + + ++ G V + + + + Sbjct: 62 G-IDAAREIKKALPAAKLIFLTMHTNAIYLRK-ALHAGASGYVLKSGAAEELLTAIEEVC 119 Query: 133 GRFL------------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 ++ +TDR+ I+++ A+G Q K I I + SV+ Sbjct: 120 KGYIYVGPDFGQDVIESIRSTGDSQGGLPALTDRQRHILQLLAEGKQNKEIGEIAHISVR 179 Query: 175 TVYTHRRNAEAKLY-SKIYKLVQ 196 TV HR ++L + +L + Sbjct: 180 TVEFHRSRLMSRLGAHSVAELTR 202 >UniRef50_A0LVS2 Two component transcriptional regulator, LuxR family n=35 Tax=Actinomycetales RepID=A0LVS2_ACIC1 Length = 303 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 66/200 (33%), Gaps = 36/200 (18%) Query: 22 RSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDS 70 K + + A F +GL ++ + D V +++ Sbjct: 85 DPIKVLVADDHALFRRGLEMVLRQEPDIQLVAEASDGAEAVARAAETLPDVVLLDVRMPK 144 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 + I +++++ EA Y + G + +S D + Sbjct: 145 RTG-IEACAAIKEVCPSAKIIMLTISDEEADL-YEAIKAGAMGYLLKEISIDEVAAAIRA 202 Query: 131 INGRF--LRKDIK---------------------KDKITDREMEIIRMTAQGMQPKSIAR 167 ++G + + K+T+REME++R+ A+G+ + IA+ Sbjct: 203 VHGGQSLISPSMASKLLNEFASLIKRGDARHQVPAPKLTEREMEVLRLVAKGLNNRDIAK 262 Query: 168 IENCSVKTVYTHRRNAEAKL 187 S TV H RN KL Sbjct: 263 QLFISENTVKNHVRNILEKL 282 >UniRef50_Q1LE49 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderiaceae RepID=Q1LE49_RALME Length = 264 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 30/208 (14%), Positives = 68/208 (32%), Gaps = 35/208 (16%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 N + + GL ++ R + D + ++LS Sbjct: 2 NNNCSVLIVEDHNLLRAGLRSMLSAQMGYHVAGEARDGREACQLAISLCPDLILMDLSLP 61 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 ++ I+ G +++ ++ +++ + + G V S D + Sbjct: 62 GMNG-IDAIAAIKRRSPGIRIIALSVHQNDEYVRE-ALRAGVDGYVLKDTSFDDLVTAMR 119 Query: 130 VI--NGRFLRKD-------------------IKKDKITDREMEIIRMTAQGMQPKSIARI 168 V+ + L + D +T RE ++++ A+G + + Sbjct: 120 VVLLGKKHLSPELYGNLVESYVSGHEMSTAKTGWDLLTARERSVLKLVAEGRSNRQVGIY 179 Query: 169 ENCSVKTVYTHRRNAEAKLYS-KIYKLV 195 N S KT+ +R + KL + +LV Sbjct: 180 MNLSPKTIEKYRASLMRKLGITNLTELV 207 >UniRef50_Q04VJ6 Receiver component of a two-component response regulator n=4 Tax=Leptospira RepID=Q04VJ6_LEPBJ Length = 221 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 66/207 (31%), Gaps = 37/207 (17%) Query: 24 DKYIWSPHDAYFYKGLSELIVDI---------DRLIYLSLEKIRKDFVFINLSTDSLSEF 74 K A +GL ++ + K+ D V ++S LS Sbjct: 6 TKIFLVDDHAILREGLKMILSGQFEICGESGDAEKALDQIGKLNPDLVITDISMPGLSG- 64 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGR 134 I+ + ++++ + I G V + + + ++ Sbjct: 65 IDLVKNLRKQYPNIRTIILSRHDNREYV-QKLLELGINGYVLKDDAGNDLLRAIEAVHKG 123 Query: 135 --FLRKDI-----------------------KKDKITDREMEIIRMTAQGMQPKSIARIE 169 +L I ++DRE EI+++ A+G +SI +I Sbjct: 124 ETYLSPGITAHFLSGFVGSGKPGEENQDAKKAFSVLSDREREILKLVAEGNSNESIGKIL 183 Query: 170 NCSVKTVYTHRRNAEAKLY-SKIYKLV 195 S TV HR N KL K+ LV Sbjct: 184 GISPATVKVHRANIMKKLNLHKVADLV 210 >UniRef50_Q8YV43 Two-component response regulator n=7 Tax=Bacteria RepID=Q8YV43_ANASP Length = 209 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 69/188 (36%), Gaps = 23/188 (12%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + A F +GL+ +I + + E+ + D ++L + Sbjct: 7 IRVLIADDHAIFRQGLATIINRDPEMQVVAQAENGEQVIALFEEHQPDVTLMDLRMPEVE 66 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + + + K +++++ S+ Y + +G + D + + Sbjct: 67 G-VAAISAICATAKSARIIVLTTYDSDEDI-YRGLQAGAKGYLLKETEPDELLNAIRTVH 124 Query: 132 -NGRFLRKDIKK--------DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRN 182 +++ D+ ++++RE+E++R AQGM IA + TV +H Sbjct: 125 RGHKYIPPDVGAKLVQRLSNPELSERELEVLRSLAQGMSNADIADALSIGEGTVKSHVNR 184 Query: 183 AEAKLYSK 190 KL Sbjct: 185 ILNKLDVS 192 >UniRef50_B8G137 Two component transcriptional regulator, LuxR family n=3 Tax=Desulfitobacterium hafniense RepID=B8G137_DESHD Length = 217 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 74/210 (35%), Gaps = 36/210 (17%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 N+ + + + A GL L+ ++ + D V ++L+ Sbjct: 2 NKKLRIVLADDHAVLRAGLKVLLNAEPDLEVIGEASDGEEAIDRVDDLHPDLVLLDLTMP 61 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 L+ ++ E L +++++ E +G V + + Sbjct: 62 KLNG-VDCIEELLKKHADLKILVLTMHDDEEYL-KAVLQVGAKGYVLKKAADVELLSAIR 119 Query: 130 VINGRFL----------------------RKDIKKDKITDREMEIIRMTAQGMQPKSIAR 167 + + ++ K ++++RE+E++R A G + IA Sbjct: 120 TVARGEMFIYPTMAAEFVYRHLVSPREPEKESKKLKQLSERELEVLRNLALGHTNQDIAD 179 Query: 168 IENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 + + SVKTV T++ KL K +LV+ Sbjct: 180 LLHVSVKTVETYKARVMEKLEMHKRAELVR 209 >UniRef50_B8GAC9 Two component transcriptional regulator, LuxR family n=3 Tax=Chloroflexus RepID=B8GAC9_CHLAD Length = 213 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 64/201 (31%), Gaps = 32/201 (15%) Query: 26 YIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSEF 74 + A GL L+ + R ++ D + ++LS + S Sbjct: 4 ILLVDDHAVLRAGLRLLLESQPDMVVVGEAEDSRTAITQATTLQPDLILLDLSLTNSSG- 62 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGR 134 + +A +++++ E + G V + + + Sbjct: 63 LAAIQSLRAAAPQARILVLTMHDDEGYVRQ-ALAAGAHGYVLKRAADAELIAAIRAVLRG 121 Query: 135 FL------------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 L + + +++RE E++ + A+G IA N S KTV Sbjct: 122 ELYIHPALTRRLLEDILPQPQPTNPWESLSEREREVLVLVARGYTAAEIAGQLNLSPKTV 181 Query: 177 YTHRRNAEAKLYSKI-YKLVQ 196 T+R KL + LVQ Sbjct: 182 ETYRTRGMEKLGLRSRAALVQ 202 >UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ectothiorhodospiraceae RepID=B8GSX5_THISH Length = 220 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 65/198 (32%), Gaps = 33/198 (16%) Query: 24 DKYIWSPHDAYFYKGLSELIVD--------------IDRLIYLSLEKIRKDFVFINLSTD 69 + G+ L+ + + ++++ D V ++++ Sbjct: 2 IDVLLVDDHELVRMGIRGLLDERAAVTGIQVVGEAHSGEEALVEAKRLKPDVVLMDINMP 61 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 + + + A +V+++ A W + G + G + + Sbjct: 62 GIGGLV-ATRRIVEAQPSVKVLVLTAMDEGP-VPRWVLEAGASGYLTKGCRIEEMIAAIQ 119 Query: 130 VI--NGRFLRKDIKK---------------DKITDREMEIIRMTAQGMQPKSIARIENCS 172 R + + + D+++ RE +I+ M QG P++IA N S Sbjct: 120 GAMQGERHISPAVAQRLALGGLAKGQANPFDELSGRERQILLMILQGQTPQAIATALNIS 179 Query: 173 VKTVYTHRRNAEAKLYSK 190 KTV T++ KL Sbjct: 180 PKTVSTYKCRVMGKLGIS 197 >UniRef50_C6E2Z1 Two component transcriptional regulator, LuxR family n=2 Tax=Geobacter RepID=C6E2Z1_GEOSM Length = 216 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 75/205 (36%), Gaps = 34/205 (16%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 K + + +G+ L+ D R + V ++++ L+ Sbjct: 2 IKVMVVDDHSIVREGIRILLERFPDLSVVAEADNGRKASELAADLAPHVVLMDMTMPGLN 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 I+ L+A +V++++ K + + + + RG + + + V + Sbjct: 62 G-IDATQRLLAACPEVRVLILSMHKDKRFVSQ-AFRAGARGYLLKDCASAELVQAVRQVA 119 Query: 133 GRFL--------------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCS 172 + + +T RE E++++ A+G K+ A N + Sbjct: 120 CGEMYVCHGIIGVVVHDYVTRLPESLTQPEVPLTPREREVLQLIAEGNNAKNAAYQLNIN 179 Query: 173 VKTVYTHRRNAEAKLYSK-IYKLVQ 196 VKTV THR+ KL + + +L + Sbjct: 180 VKTVDTHRQQIMKKLKMRSVAELTK 204 >UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 Tax=Vibrio RepID=C9QDP7_VIBOR Length = 209 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 30/201 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSLS 72 + I + GL + D + +++ D + ++++ +L+ Sbjct: 2 IRLILADDHRLMQDGLKSRLEREDNLDIIACVGTGTEALEATLELKPDVLLLDINMPNLN 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELV-YVI 131 I + V++++ S + +G V + + + V Sbjct: 62 G-IEVLEQLAKTSSATSVIMLSMHDSRDYVVRSV-KAGAKGYVLKDVGSEELVMAINQVA 119 Query: 132 NGRFL---------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 GR + K D ++ RE ++++ A G K IA + SV+TV Sbjct: 120 QGRSYLCPQASDRLLEQINEAPEEKDDTLSKRESDVLKAIANGAGNKEIADSLHISVRTV 179 Query: 177 YTHRRNAEAKLYS-KIYKLVQ 196 THR + KL + LV+ Sbjct: 180 ETHRLRIKKKLGATSTAALVK 200 >UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator receiver n=32 Tax=Betaproteobacteria RepID=Q46VQ7_RALEJ Length = 231 Score = 146 bits (370), Expect = 3e-34, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 60/198 (30%), Gaps = 31/198 (15%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKI----RKDFVFIN 65 + + + A G+ + D LE+ R D V + Sbjct: 16 DAPARVLLIDDHALVRDGMRMHLTLQPDLYVVGEADGGEAALAWLERAGARERPDLVITD 75 Query: 66 LSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRK 125 + + I V++++ + A + RG V D Sbjct: 76 IGMRGMGG-IALTAALHEQYPEIAVLVVSMHDNLEYARQ-AVRAGARGYVLKDAPADELM 133 Query: 126 ELVYVINGRFLRKDIK--------------KDKITDREMEIIRMTAQGMQPKSIARIENC 171 + + + + D +T RE +I+ +GM K IA Sbjct: 134 AAIEAVLAGRVFYSARIARGMAEQMPATGPLDALTRRERDILGCIGRGMANKEIATQLGV 193 Query: 172 SVKTVYTHRRNAEAKLYS 189 SV+TV THR N + KL Sbjct: 194 SVRTVETHRLNLKRKLGI 211 >UniRef50_B4D2X8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2X8_9BACT Length = 242 Score = 146 bits (369), Expect = 4e-34, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 78/204 (38%), Gaps = 34/204 (16%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + + +G++ +I + ++ ++ D I++S + Sbjct: 24 RVLLVDDHPAIRRGMAAIIDEEPDLTTCGEASTAPMALEAMRRLNPDIAVIDISMPGTNG 83 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRD-IRKELVYVIN 132 + L+ G Q+++++ A + +G V G + + + L V Sbjct: 84 -VELIKLMLAEQPGLQILMLSMHDESVYALR-ALRAGAKGYVMKGEALECVLTGLRKVGE 141 Query: 133 GR-FLRK------------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 G ++ DK++DRE E++R+ +G + IA + SV Sbjct: 142 GEIYVSPKFSDRLIFKTIQSTIAGVASPVDKLSDREFEVLRLLGRGFGSREIAEELSLSV 201 Query: 174 KTVYTHRRNAEAKLYSKIY-KLVQ 196 KTV THR + + KL K ++V+ Sbjct: 202 KTVETHRAHIKEKLGFKEAGEMVR 225 >UniRef50_C5T9P3 Two component transcriptional regulator, LuxR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9P3_ACIDE Length = 239 Score = 146 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 27/190 (14%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSL 71 + + G+ + + + D V ++ + Sbjct: 4 PIRILLVDDHPLVRDGVRMRLEATEHICVAGEAASVGESLPLAHALAPDIVLTDIRMPAA 63 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 S I+ + +V++++ + RG V E + + Sbjct: 64 SG-IHLAAVFREQFPRVRVLVLSMHDDAEYVRR-AVSLGARGYVLKDAPAQQLIEAIEAV 121 Query: 132 --NGRFLRKDIKK------------DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 G + +++ +T RE +++ ++G K IA + SV+TV Sbjct: 122 HQGGCYFSPGLEQLLDDAGSVARSNRSLTPREASVLQWVSEGRSNKEIAALMGTSVRTVE 181 Query: 178 THRRNAEAKL 187 THR + KL Sbjct: 182 THRLHLRRKL 191 >UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=Gammaproteobacteria RepID=A5F1Q5_VIBC3 Length = 216 Score = 146 bits (368), Expect = 5e-34, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 68/204 (33%), Gaps = 30/204 (14%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 ++ + + G + ++ + D V +++S Sbjct: 6 DKPIRVVMVDDHQVVLDGFIARLEQEPEIEVVATASNGLEALELVKLHQPDVVLMDVSMP 65 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 ++ I V +V+++ + + G + +S + + Sbjct: 66 IMNG-IEATRLIKEEVPHTKVLMLTMHDNREYIMQ-VMQAGAMGYMLKEISALKMVQAIK 123 Query: 130 VINGRF----------------LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 ++ L K + ++ RE I+RM AQG K IA + N S Sbjct: 124 TVHQGATYFCESTTSTLFSQEILPVANKPNPLSRREEAILRMVAQGCSSKKIATLLNISY 183 Query: 174 KTVYTHRRNAEAKLY-SKIYKLVQ 196 +TV THR+N + KL +L Q Sbjct: 184 RTVETHRQNIKHKLDIHSTAELAQ 207 >UniRef50_B9XL75 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XL75_9BACT Length = 234 Score = 145 bits (367), Expect = 6e-34, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 35/208 (16%) Query: 22 RSDKYIWSPHDAYFYKGL---------SELIVD--IDRLIYLSLEKIRKDFVFINLSTDS 70 ++ K + + KGL E++ + + + ++ + V ++L + Sbjct: 17 KTIKVLLADDHPVVRKGLGSCLNNLEHIEIVGEAVDGQETVSKVRELSPEIVLMDLDMPT 76 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 +S + +V++++ ++ S +G V + Sbjct: 77 MSG-LEATKIIRREFPLVKVLILSIHTNKDYVLQ-IIKSGAQGYVLKDAPLTELVRAIES 134 Query: 131 INGR--FLRKDIKK-------------------DKITDREMEIIRMTAQGMQPKSIARIE 169 ++G F DI + K+T+RE E++ M A+G K +A Sbjct: 135 VHGGGAFFSPDISQIMLDQYLAEATNGEESGNSKKLTNRETEVLSMIAEGQSNKEMASRM 194 Query: 170 NCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 V+TV THR KL + L + Sbjct: 195 GVGVRTVETHRERVMNKLDIHNVAGLTK 222 >UniRef50_Q47DK2 Two component transcriptional regulator, LuxR family n=1 Tax=Dechloromonas aromatica RCB RepID=Q47DK2_DECAR Length = 211 Score = 145 bits (367), Expect = 6e-34, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 70/203 (34%), Gaps = 30/203 (14%) Query: 22 RSDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDS 70 + + I + G+ ++ ++++++ D V ++++ Sbjct: 2 KKTRIILADDQLLIRAGIRAIVETLPGFQIEAECTDGYEAISAIQRLQPDVVLLDIAMPG 61 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 S I +++++++ + + + G + + + + Sbjct: 62 PSG-IEVARTIRQFDPNTKILVLSSVDRPEIIEQ-ALAAGVNGYLLKDFVLAELLQALEM 119 Query: 131 I--NGRFLRKDIK--------------KDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 + RFL I+ ++T R+ EI+R+ A G K IAR S K Sbjct: 120 VLHGERFLSPKIREMSRFSDAEGTSGSGTQLTARQTEILRLVASGRTTKEIARDLGISPK 179 Query: 175 TVYTHRRNAEAKLYS-KIYKLVQ 196 TV HR ++ + L + Sbjct: 180 TVEFHRSRLMERIGVHDVTGLTR 202 >UniRef50_Q1H354 Two component transcriptional regulator, LuxR family n=4 Tax=Proteobacteria RepID=Q1H354_METFK Length = 213 Score = 145 bits (367), Expect = 7e-34, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 30/201 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSLS 72 + + GL L+ D Y + D + +++S + Sbjct: 5 IRIMLVDDHEVVRSGLRRLLEQNDGVEVIAEADSGEQAYQFYGEHMPDVIVMDMSMPGMG 64 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + ++ +V++ + ++ A A+ + R V + D + V + Sbjct: 65 G-LEALRRIIARYPQARVIIFSMHENAAFASQ-ALGAGARAYVAKSGAADDLVQAVREVA 122 Query: 132 -NGRFLRK--------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 +L D ++ RE E+ R+ A G + I+ I S KTV Sbjct: 123 QGKGYLSPGIAQQIALQTLSGSDDPTRLLSAREFEVFRLLAAGKGVEEISTILKISQKTV 182 Query: 177 YTHRRNAEAKLYSKIY-KLVQ 196 ++ + KL +LV+ Sbjct: 183 ANYQTLLKQKLGITSPIELVR 203 >UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ASJ5_PELPD Length = 208 Score = 145 bits (367), Expect = 7e-34, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 69/196 (35%), Gaps = 26/196 (13%) Query: 25 KYIWSPHDAYFYKGLSELI----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSEF 74 + + + A +GL+ ++ R E +R D V ++++ L+ Sbjct: 4 RILIADDHAIVREGLTMILESSGMIVAGEARDGRDALSQTEVLRPDVVVMDIAMPELNG- 62 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI--- 131 I+ + +V++++ + + + R + + + V + Sbjct: 63 IDATRMIHGRLPEVKVIVLSMHNTREHV-FRAMQAGARAYLLKESAGSGLVDAVRAVIRG 121 Query: 132 ----NGRFLRKDI------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRR 181 D ++ RE E+I++ +G IA + + S K++ T+R Sbjct: 122 ECYFGEGVDAPQAVAGFKSPLDSLSLREREVIQLVVEGRTSAEIAELLSLSPKSIETYRS 181 Query: 182 NAEAKLYS-KIYKLVQ 196 KL I LV+ Sbjct: 182 RLMVKLGVGNIPALVK 197 >UniRef50_C0N6H7 Response regulator receiver domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6H7_9GAMM Length = 214 Score = 145 bits (367), Expect = 7e-34, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 30/202 (14%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTDSL 71 + + + A GL L+ Y + +I D + +++S + Sbjct: 4 AIRVMLVDDHAVVRSGLCRLLEQNTDISVVGEAESGEQAYQTYPEISPDVLVMDMSMPGM 63 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL-SRDIRKELVYV 130 + L+ G +V++ + ++ A + G V + D+ K + V Sbjct: 64 GG-LEAVRRILNRWSGAKVIMFSMHENATYAIQS-LTAGAMGYVAKSGHAEDLVKAVREV 121 Query: 131 INGRFLRK---------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 +G+ D ++T RE E+ R+ A+G IA N KT Sbjct: 122 KSGKSFLSSDMAHKVALQSLAGDDNPTQRLTSREFEVFRLLAEGKLVDDIASRLNIGQKT 181 Query: 176 VYTHRRNAEAKLY-SKIYKLVQ 196 V ++ + + KL LV+ Sbjct: 182 VANYQTSLKQKLGIHSPVDLVR 203 >UniRef50_O07528 Uncharacterized transcriptional regulatory protein yhcZ n=3 Tax=Bacillus RepID=YHCZ_BACSU Length = 214 Score = 145 bits (367), Expect = 7e-34, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 59/194 (30%), Gaps = 31/194 (15%) Query: 25 KYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSLSE 73 K + + KGL D +E+ + D V ++LS + Sbjct: 2 KIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDG 61 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING 133 I + + ++++ + + + + + + V G Sbjct: 62 -IQAIKKAIQQFPDTNIIVLTSYSDQEHV-IPALQAGAKAYQLKDTEPEELVKTRQVHGG 119 Query: 134 RF------------------LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 + + K ++T RE +++ A G K IA S KT Sbjct: 120 EYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNKEIAAALFISEKT 179 Query: 176 VYTHRRNAEAKLYS 189 V TH N AKL Sbjct: 180 VKTHVSNLLAKLEV 193 >UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 Tax=Bacteria RepID=Q3Z7M1_DEHE1 Length = 232 Score = 145 bits (367), Expect = 8e-34, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 66/206 (32%), Gaps = 35/206 (16%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + GL L+ +E ++ + +L +S Sbjct: 2 ISIVLADDHQIVRHGLKALLEAEADFEVVGEASDGIEAVNLVESLQPGVLVTDLMMGGMS 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--V 130 I + + VV+++ +EA + + R V + + V V Sbjct: 62 G-IEVTYQVVKRSPKTAVVILSMYGNEAYVHE-ALRAGARAYVLKDSTSEELVRSVREAV 119 Query: 131 INGRFLRKDI-------------------KKDKITDREMEIIRMTAQGMQPKSIARIENC 171 R+L + + +T RE E++ + AQG IA Sbjct: 120 QGHRYLSSPLSEKAIEAYMEKSAEATSLDPYETLTIREREVLHLVAQGHTCAEIAERLFI 179 Query: 172 SVKTVYTHRRNAEAKLYSKIY-KLVQ 196 S +TV HR N KL + +L++ Sbjct: 180 SPRTVEVHRANMMRKLDLRNQTQLLR 205 >UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=Bacteria RepID=B4VFW8_9ACTO Length = 216 Score = 145 bits (366), Expect = 8e-34, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 30/193 (15%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + + +GL + E++R D + +++ Sbjct: 9 RVLLVDDHQVVRRGLRTFLEVQEDIEVVGEASDGEEGIARAEELRPDVILMDIKMPGTDG 68 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING 133 I +V+++ + + + G VY + D + ++ Sbjct: 69 -IEALRRLRELANPARVLIVTSFTEQRTVV-PALRAGAAGYVYKDIDPDALAGAIRSVHA 126 Query: 134 RFL-----------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 + + +TDRE E++ A G + IAR S KTV Sbjct: 127 GHVLLQPEVAVALLTQDDQGPSSSRGGALTDREREVLSHIADGRSNREIARALVLSEKTV 186 Query: 177 YTHRRNAEAKLYS 189 TH N KL Sbjct: 187 KTHVSNILMKLDV 199 >UniRef50_Q2BNZ3 Transcriptional regulator, LuxR family protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BNZ3_9GAMM Length = 223 Score = 145 bits (366), Expect = 8e-34, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 72/213 (33%), Gaps = 38/213 (17%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 + K + G L+ D + D V ++L+ Sbjct: 2 SSPIKILLVDDHPLVRAGFQRLLISDESIEIVGEADNGQSACEMYASHMPDVVIMDLNMP 61 Query: 70 ----------SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL 119 +L+ + +S +V+++ A + + + N+ +G + Sbjct: 62 SDANTEEMSNNLNGGLEAIRRIISHDPKAKVLVLTAMEIDPFPAH-VVNAGAKGFLTKRC 120 Query: 120 SRDIRKELVYVINGR--FLRKDIKKD-------------KITDREMEIIRMTAQGMQPKS 164 + D E V I+ ++ ++I+ +T RE++I + A+G Sbjct: 121 APDELLEAVKAIHAGEEYITEEIRLRITEGGSADGASLASLTKRELQIFSLLAEGRTVSI 180 Query: 165 IARIENCSVKTVYTHRRNAEAKLYSKIY-KLVQ 196 +A S KTV+ HR N KL +LV Sbjct: 181 VAEEMFLSPKTVHAHRTNIFRKLKISNNSELVH 213 >UniRef50_B4CWX5 Two component transcriptional regulator, LuxR family n=3 Tax=Verrucomicrobia RepID=B4CWX5_9BACT Length = 210 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 23/189 (12%) Query: 22 RSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDS 70 + + + GL+ + K D V ++L Sbjct: 5 KPIRILVVDDHHVVRSGLAASLGLEDDLNVVGEAGNAGEAVTQFRKHHPDVVLMDLRLPG 64 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 + + +V++ E Y + RG + +R+ + Sbjct: 65 ANGT-AATADLRREWPDARVLMFTTFDGEEDI-YRAMQAGARGYLLKSAAREELLSAIRA 122 Query: 131 INGR----------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 + L + ++DRE E++++ A+G K IA S +TV H Sbjct: 123 VAAGERHLSAALAQRLAGRVAAPDVSDREREVLQLIARGKANKEIAAALGISEETVKRHA 182 Query: 181 RNAEAKLYS 189 N K+ Sbjct: 183 SNLFVKMGV 191 >UniRef50_B2JSN3 Two component transcriptional regulator, LuxR family n=28 Tax=Proteobacteria RepID=B2JSN3_BURP8 Length = 210 Score = 144 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 73/201 (36%), Gaps = 30/201 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRK-----------DFVFINLSTDSLS 72 + + + A GL ++I + ++ + D + ++++ +S Sbjct: 2 IRILIADDHAIVRGGLKQIIATTNDIVVAAEAAQGSEVVDKLRTCAVDLLLLDMTMPGIS 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 ++ + V++++ +A+ + G + D+ + + Sbjct: 62 G-VDLIRRVRAEQPALPVLVLSIHDEAQVASR-ALRAGATGYLTKDSDPDVLLAAIRKLA 119 Query: 132 -NGRFLRKD--------------IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 GRF+ + ++DRE ++++M A G IA I S KT+ Sbjct: 120 DGGRFIDPKLVDAMVFETHRGDMPPHEVLSDREFQVLQMLAAGKSINEIADICALSAKTI 179 Query: 177 YTHRRNAEAKLY-SKIYKLVQ 196 TH+ KL + ++++ Sbjct: 180 STHKMRLMQKLGLANNAEVIR 200 >UniRef50_C6XAP6 Two component transcriptional regulator, LuxR family n=3 Tax=cellular organisms RepID=C6XAP6_METSD Length = 214 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 71/204 (34%), Gaps = 30/204 (14%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 + + GL L+ + Y + D ++LS Sbjct: 3 EEIIRVLLVDDHTVVRSGLCRLLEQHSGIKVVAEAESGEQAYQVFGEYLPDVTVMDLSMP 62 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELV- 128 + + L+ + +V++ + ++ A A S RG V S D + V Sbjct: 63 GMGG-LEAMRRILARYRTARVLIFSMHENAAFAMQT-LKSGARGYVAKTGSFDELVKAVV 120 Query: 129 YVINGR-FLRKDIKKD--------------KITDREMEIIRMTAQGMQPKSIARIENCSV 173 V G+ ++ I + +++ RE E+ R+ A+G + IA + S Sbjct: 121 EVARGKSYISTSIAQKIALQTVIGDGDLISQLSPREFEVFRLFAEGKNAEEIAEVLKISQ 180 Query: 174 KTVYTHRRNAEAKLYSKIY-KLVQ 196 KTV + + KL ++V+ Sbjct: 181 KTVANYHTLVKQKLGLSNPVEMVR 204 >UniRef50_B6JD38 Two component transcriptional regulator, LuxR family n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JD38_OLICO Length = 210 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 73/203 (35%), Gaps = 32/203 (15%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 + I + F +GL +++ + + + L + D V ++LS +S Sbjct: 2 TRIIIADDHTIFREGLRQILAEANDFTLVGEATNGDDLLVRLREAPCDIVLLDLSMPGIS 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 I ++++++ + + G V + D + ++ Sbjct: 62 G-ITLVRAAREIAGAHRIIVLSMHEEHQYVVE-ALKAGADGYVTKNSASDQLIAAIRKVS 119 Query: 133 GRFL------------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 L ++ ++T RE E+ M G + IAR + S+K Sbjct: 120 QGELFVSAAASQEAILREMRTSPTELPHTRLTRREREVFDMLVAGHKISRIARDLDLSIK 179 Query: 175 TVYTHRRNAEAKLYSK-IYKLVQ 196 TV TH+ N AK+ ++ LV+ Sbjct: 180 TVSTHKTNLLAKMDAETTADLVR 202 >UniRef50_B5YIR2 Response regulator UvrY n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIR2_THEYD Length = 213 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 30/200 (15%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTD 69 + K + F KGL E+++D L K D VF++++ Sbjct: 2 TKRLKVLIVDDHTLFRKGLKEILLDTPYIKECKEAKSGYEAIDILSKESFDIVFLDIAMS 61 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 ++ I + ++++++ E A G + + + V Sbjct: 62 DING-IETLKKIKILYPETKILMLSMYPEEQYAIRS-LKCGASGYLTKSADPEELLKAVD 119 Query: 130 VI--NGRFLRKD---------------IKKDKITDREMEIIRMTAQGMQPKSIARIENCS 172 I G++L +K+++RE ++ M A+G I++ + S Sbjct: 120 KIIKGGKYLPHTFSEKLLHYIDKSEDIPPHEKLSEREFQVFLMIAKGKSLIEISKELSIS 179 Query: 173 VKTVYTHRRNAEAKLYSKIY 192 +KTV T+R KL + Sbjct: 180 IKTVSTYRARILEKLGLENN 199 >UniRef50_UPI00018507A5 two component LuxR family transcriptional regulator n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI00018507A5 Length = 212 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 66/203 (32%), Gaps = 36/203 (17%) Query: 22 RSDKYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTDS 70 +S + + + F +G+S ++ + + D V +++ Sbjct: 2 KSIRVLIADDHPLFRQGVSSVLANTPDNEVIAEAGSGEEAVQMACNLLPDLVLMDIQMPD 61 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 L+ I + LS + +++I + + + + + RG V ++ V Sbjct: 62 LNG-IEATRKILSKCRDIYIIIITMFEDDT-SVFSAMQAGARGYVLKDAEKEDILRAVRA 119 Query: 131 INGR-----------------------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIAR 167 I + ++T RE E++ + ++G +A Sbjct: 120 IAKGEVLFSSGVASRMIDYFAQGEVTQTVVASTLFPELTSRESEVLFLLSKGASNSEVAE 179 Query: 168 IENCSVKTVYTHRRNAEAKLYSK 190 S KTVY + N KL Sbjct: 180 TLGLSNKTVYNYVANILNKLQVS 202 >UniRef50_Q2RJU9 Two component transcriptional regulator, LuxR family n=3 Tax=Clostridia RepID=Q2RJU9_MOOTA Length = 222 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 25/199 (12%), Positives = 56/199 (28%), Gaps = 33/199 (16%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + + + +G+ +++ + + + + ++++ L Sbjct: 6 KITILIADDHSLVREGIRKILELEPDLQVVGEAATGQEAIEMTRRYQPQVIIMDINMPGL 65 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + I ++ + E S + G V +S + + VY + Sbjct: 66 NG-IEATKVIRQEWPQIAILALTIHDDEEYIIE-LLRSGVSGYVLKDISAEELVQAVYQV 123 Query: 132 NGRF--------------------LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENC 171 +T RE EI+ + G + IAR Sbjct: 124 ARGARVIHPGVAQKVIGCIQKQKPFTPAPVSIPLTAREREILIHVSLGKSNREIARELFI 183 Query: 172 SVKTVYTHRRNAEAKLYSK 190 S KTV H + K+ Sbjct: 184 SEKTVKNHLTHIFHKIGVS 202 >UniRef50_C4ZNU7 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZNU7_THASP Length = 220 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 70/204 (34%), Gaps = 32/204 (15%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDI----------DRLIYLSLEKIRK-DFVFINLSTDSL 71 S + + + F L L+ L++ + D V ++++ + Sbjct: 2 SLRILLADDHQMFRHALRALLARDPELEVVAEAASGEEVLAIADAQPVDLVCMDIAMPGM 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 I L+ +V+ ++A + RG + G + D + + Sbjct: 62 DG-IEATRRLLARHPALRVIGLSAFADRQFVTD-LLAAGARGYITKGEAGDELLRAIRTV 119 Query: 132 --NGRFLRKDIKK----------------DKITDREMEIIRMTAQGMQPKSIARIENCSV 173 +L ++ ++T RE +++++ A+G+ I + + Sbjct: 120 CEGRSYLCPEVAATVADALRDSPGVYAAAPRLTARERQVLQLIAEGLTSVQIGDRLHIAA 179 Query: 174 KTVYTHRRNAEAKLY-SKIYKLVQ 196 TV HRRN KL + +L + Sbjct: 180 STVEVHRRNLMRKLDLHNVAELTR 203 >UniRef50_A1SKW0 Two component transcriptional regulator, LuxR family n=1 Tax=Nocardioides sp. JS614 RepID=A1SKW0_NOCSJ Length = 215 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 55/189 (29%), Gaps = 25/189 (13%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 + G ++ + ++ V +++ ++ Sbjct: 6 IAVLVVDDHTLHRDGTRRILEQYDDVDVVGDAASGEDALAMVNRLHPRVVLMDIRLPGMN 65 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 I +V+++ A E ++ G + E V + Sbjct: 66 G-IEATRRIRERHPDTRVLIVTAYDDEEYV-RGAFDVGAAGYLSKTAPGRELVEAVRAVA 123 Query: 133 GR------------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 G ++ + +TDRE ++R+ A+GM K IA S +TV H Sbjct: 124 GGNSVLQPTLMAALLAKRSSPANTLTDRERAVLRLLAEGMHNKQIASRLGISARTVERHC 183 Query: 181 RNAEAKLYS 189 KL Sbjct: 184 DRIYGKLGV 192 >UniRef50_C7PJC5 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteroidetes RepID=C7PJC5_CHIPD Length = 208 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 28/193 (14%), Positives = 63/193 (32%), Gaps = 29/193 (15%) Query: 25 KYIWSPHDAYFYKGLSELIV-----------DIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + + +GL ++ + + EK D + ++++ ++ Sbjct: 3 RIFITDDHPIVREGLKNVLNATEGFAVTGTCSTGKETLEAFEKKEPDILLLDINLPDING 62 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--VI 131 + V+ ++ + N G + +I E + + Sbjct: 63 -VELCAAVKKKHPDVYVIALSVHNEAPIIN-SILRQGASGYIQKNALSEIIVEAIQDVLK 120 Query: 132 NGRFLRKDIK--------------KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 G ++ + + K+T RE EI+++ A+G+ IA S TV Sbjct: 121 GGSYVCEQSREILRRQRGKGGLTQLPKMTRREKEILKLAAEGLTIAQIAEKLFISPYTVE 180 Query: 178 THRRNAEAKLYSK 190 +HR+N K Sbjct: 181 SHRKNLMDKFEVN 193 >UniRef50_C1TL94 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL94_9BACT Length = 215 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 77/205 (37%), Gaps = 34/205 (16%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDRLIYLSLE-----------KIRKDFVFINLSTDSLS 72 I + F +G+ +++ D L L+L + D V ++++ ++ Sbjct: 2 IPLIIADDHELFLEGVRDILSREDDLDVLALARTGQEALELTLQHHPDVVVMDVTMPKMN 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 I S++ +++ ++ + L + G S + +++++ Sbjct: 62 G-IEASRRIKSSLGDVKILALSMHADKRLIAE-ILKAGASGYALKEGSSEELIRAIHIVS 119 Query: 133 GR--FLRKDI------------------KKDKITDREMEIIRMTAQGMQPKSIARIENCS 172 +L I + ++DRE E++ + A+G K +A + S Sbjct: 120 SGETYLSPKIASILIKDYLKLLDTAVPSRASLLSDREREVLALLAKGSSTKEVASSLHIS 179 Query: 173 VKTVYTHRRNAEAKLYS-KIYKLVQ 196 TV THRR KL I +L++ Sbjct: 180 KNTVDTHRRRIMEKLDCGNIAELIR 204 >UniRef50_UPI00017443C2 hypothetical protein VspiD_13430 n=2 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017443C2 Length = 257 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 35/204 (17%) Query: 17 MECQNRSDKYIWSPHDAYFYKGLSELIVDIDRL-----------IYLSLEKIRKDFVFIN 65 ++ R+ + + F G+ E++ DID S + D V ++ Sbjct: 21 LQKSARATRVLVVDDHPGFRLGVVEMLHDIDGFEVCGEAGDSTTAIASFRDLEPDLVVMD 80 Query: 66 LSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRK 125 +S I L+ V+++ E + G + + Sbjct: 81 ISLPGRDG-IEVTKMMLAERPHTTVLVLTMHD-ELFYGLRALKAGAYGYLRKDDTLTQLA 138 Query: 126 ELVYVINGR--FLRKD--------------------IKKDKITDREMEIIRMTAQGMQPK 163 + V R ++ ++DREME+ A+G+ + Sbjct: 139 DAVRHTANRTHYVSPRLLAQLINKLAHTPTVDEEGKPAIQGLSDREMEVFHWLAKGLGTR 198 Query: 164 SIARIENCSVKTVYTHRRNAEAKL 187 IA S+KT+ THR + ++KL Sbjct: 199 QIATQLCLSIKTIETHRAHIKSKL 222 >UniRef50_C7RMN3 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RMN3_9PROT Length = 213 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 62/204 (30%), Gaps = 30/204 (14%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIV-----------DIDRLIYLSLEKIRKDFVFINLSTD 69 R + + A GL L+ + + + D +++ Sbjct: 3 ERKLQILLVDDHAVVRGGLRLLLAQTDDMEVVSEAENAEQAISMIRQNEFDVALVDIGLP 62 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 ++ + + V++++ E A + G + + Sbjct: 63 G-KGGLDLLKQIKAERPRIAVLMLSMYAEEVYAVR-ALKAGASGYLTKNSPPGTLLAAIR 120 Query: 130 VI--NGRFLRKDI--------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 + GR + + D ++DRE+E++R A G IA + S Sbjct: 121 KVAGGGRHVSPALLEQLAVEVGQGRKSASDALSDREIEVLRRLASGESLTQIAEALHLSP 180 Query: 174 KTVYTHRRNAEAKLY-SKIYKLVQ 196 KTV T+R K +L + Sbjct: 181 KTVTTYRARIVEKTGLHSNAELTR 204 >UniRef50_P54662 Transcriptional regulatory protein degU n=24 Tax=Bacillales RepID=DEGU_BREBE Length = 236 Score = 144 bits (363), Expect = 2e-33, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 67/217 (30%), Gaps = 46/217 (21%) Query: 18 ECQNRSDKYIWSPHDAYFYKGLSELIV-----------DIDRLIYLSLEKIRKDFVFINL 66 + + + F +G+ ++ + +EK D + +++ Sbjct: 4 QVNENKIQIVIIDDHQLFREGVKRILAMEPEFEVVADGEDGENAVELVEKYNPDVILMDI 63 Query: 67 STDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKE 126 + ++ + + + +V++++ E+ + + G + + D E Sbjct: 64 NMPKVNG-VEATRDLIQRYPDVKVLVLSIHDDESYVTH-VLKTGASGYLLKEMDADALIE 121 Query: 127 LVYVI--NGRFLRKDIKKDK-------------------------------ITDREMEII 153 V V+ G ++ + + +T RE E++ Sbjct: 122 AVKVVAQGGAYIHPKVTHNLIKEYRRLVNEDEQESSEIGFKEVEYRKPLHILTRRECEVL 181 Query: 154 RMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 ++ G + I S KTV H N K+ Sbjct: 182 QLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVN 218 >UniRef50_Q3BU15 Two-component system response regulator, LuxR family n=12 Tax=Xanthomonadaceae RepID=Q3BU15_XANC5 Length = 221 Score = 143 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 62/200 (31%), Gaps = 34/200 (17%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + + I GLS L+ + R D V ++LS Sbjct: 11 AVRVIIVDDHTLVRAGLSRLLQTFAGIDVVGEASNAQQALDMTSLHRPDLVLMDLSLPGR 70 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL------------ 119 S ++ + L A VV+++ + G V Sbjct: 71 SG-LDAMTDVLRAAPRTHVVMMSMHDDPVHVRD-ALDRGAVGFVVKDAAPLELELALRAA 128 Query: 120 -------SRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCS 172 S I +++ + GR + ++ R+ EI+R +G K IA S Sbjct: 129 AAGQVFLSPQISSKMIAPMLGREKP--VGIAALSPRQREILREIGRGQSNKEIAADLGIS 186 Query: 173 VKTVYTHRRNAEAKLYSKIY 192 VKTV THR L + Sbjct: 187 VKTVETHRARMMESLGCRRA 206 >UniRef50_A1HU08 Two component transcriptional regulator, LuxR family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU08_9FIRM Length = 216 Score = 143 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 33/198 (16%), Positives = 69/198 (34%), Gaps = 31/198 (15%) Query: 22 RSDKYIWSPHDAYFYKGLSELIVDIDRLI-----------YLSLEKIRKDFVFINLSTDS 70 + K + GL ++ + + +K+R D V +++S Sbjct: 2 KKIKVLIVDDHTLMRSGLRLMLSAQEDIEVVGEAADGSGGIAMAQKMRPDVVLLDISMPE 61 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 +S + L+ +V+L+ + + G V + D+ + V Sbjct: 62 MSG-LECLKTLLANQPDLRVILLTMHEDARYVKEGF-ALGAMGYVLKKAADDVLYQAVRA 119 Query: 131 I--NGRFLRKDIKKD----------------KITDREMEIIRMTAQGMQPKSIARIENCS 172 + +++ I K ++D+E +++ + A G + IA S Sbjct: 120 VYSGEMYIQPSITKAVVAELTERPRADDLRKPLSDQEKKVLSLIAAGYANREIAEQLVIS 179 Query: 173 VKTVYTHRRNAEAKLYSK 190 VKTV T++ KL K Sbjct: 180 VKTVETYKYRIMEKLNCK 197 >UniRef50_C8WSR5 Two component transcriptional regulator, LuxR family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WSR5_ALIAD Length = 231 Score = 143 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 29/203 (14%), Positives = 65/203 (32%), Gaps = 35/203 (17%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTD 69 K + F +G+ ++ R + ++ D +++ Sbjct: 7 ESVIKVLVVDDHELFRRGVVTVLRSTPGIYVVGEAGNGREAIECFQTLQPDVTLLDIHMP 66 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 + + + A +++++ ++E + + S G V +S + E V Sbjct: 67 VCNG-LETARKMREANPNTKILMLTVSETEEML-FEAVKSGASGYVLKSVSPERLIECVR 124 Query: 130 VI----------------------NGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIAR 167 + + ++T+RE E+++ + G K IAR Sbjct: 125 QVYEGEPVVPSSLAMKMIAEFSRTAETRMPSSESVTELTEREREVLQYLSAGASNKEIAR 184 Query: 168 IENCSVKTVYTHRRNAEAKLYSK 190 S TV H R+ KL+ Sbjct: 185 ALFISENTVRNHVRHILDKLHLS 207 >UniRef50_C4DI56 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DI56_9ACTO Length = 235 Score = 143 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 25/192 (13%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 + + + + +GL + + D V ++L+ Sbjct: 2 SEPIRVLVADDHPIVRQGLKTFLDIQPDLSVVAEARDGDEALALIAAHEPDVVLLDLNMP 61 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 S + K +VL + +EA+ + G +Y + D + + Sbjct: 62 GSDGAKVLTRLAASDHRAKVIVLTSV--TEAVRVTEAVAAGAAGFLYKDIDPDSLAQAIR 119 Query: 130 VINGRFL------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 + + +T RE E++ + A G + IA+ + + KTV Sbjct: 120 SVADGQVIFAREAVTAMTAPAPGPVAALTAREREVLALVAAGRSNREIAKQLSVAEKTVK 179 Query: 178 THRRNAEAKLYS 189 TH + KL Sbjct: 180 THLSSLFRKLGV 191 >UniRef50_C7I0E4 Two component transcriptional regulator, LuxR family n=2 Tax=Thiomonas intermedia K12 RepID=C7I0E4_THIIN Length = 226 Score = 143 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 65/200 (32%), Gaps = 30/200 (15%) Query: 25 KYIWSPHDAYFYKGLSELIVDIDRLIY---------LSLEKIRKDFVFINLSTDSLSEFI 75 + + A + L+ + D S+ V ++LS + + Sbjct: 20 RVLIIDDHALLGESLARFLGSNDMQAVWCGDLVEAMQSIRDRSWSVVLLDLSMPRGNG-L 78 Query: 76 NRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--VING 133 + V++++ + A G + G S D+ E + V G Sbjct: 79 DLLKRIKLMHPDLPVLILSMHPEQQFALR-ALRGGAAGYLTKGCSPDVLVEAIQKVVHGG 137 Query: 134 RFLRK----------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 R+L + +++DREM++ +G +A + S KTV Sbjct: 138 RYLTPGVAEQLANYMNEGEAAEEPHARLSDREMQVFMRLVEGKSVNQVADELHISCKTVS 197 Query: 178 THRRNAEAKLYSKI-YKLVQ 196 TH+ KL LV+ Sbjct: 198 THKTRLMHKLALDNDADLVR 217 >UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0H3_THERP Length = 245 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 61/204 (29%), Gaps = 41/204 (20%) Query: 26 YIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTDSLSEF 74 + F G+ + +++ D + ++LS ++ Sbjct: 6 ILIVDDHPLFRSGIRWSLEQNPQFVIVGEAADGSEALRLADELSPDVILVDLSLPGMNG- 64 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELV-YVING 133 + V+++ + + + + + + +++ V G Sbjct: 65 LEVARALKRRQPQAGVIILTMHQDDEQL-FNAIRAGASAYCTKDIEPEQLIDVITRVARG 123 Query: 134 RFLRKDIKKDK---------------------------ITDREMEIIRMTAQGMQPKSIA 166 +L ++ + +T RE+EI+ A+G K IA Sbjct: 124 EYLINEMVLSRPFVASRVLDQFRELSRLDRTSSGFFSPLTPREIEILDCVARGYSNKEIA 183 Query: 167 RIENCSVKTVYTHRRNAEAKLYSK 190 + N S +TV H + KL Sbjct: 184 QALNISDQTVKNHITSILRKLAVN 207 >UniRef50_B1M5J4 Two component transcriptional regulator, LuxR family n=7 Tax=Bacteria RepID=B1M5J4_METRJ Length = 222 Score = 143 bits (361), Expect = 3e-33, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 69/209 (33%), Gaps = 35/209 (16%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 + + G+ L+ + D +++S Sbjct: 2 TDRIRVALADDHPIVLAGIRTLLNADPEIELVGEATSGSEALPMIHAADPDVAVVDVSMP 61 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 L+ + + +V+++ + A + RG + + + V Sbjct: 62 GLNG-LELTERVAGSCPRTRVLVLTVHEDAAYV-QPLLKAGARGYLLKRSAAEDLLRAVR 119 Query: 130 VI--NGRFLRKDIK-------------------KDKITDREMEIIRMTAQGMQPKSIARI 168 + G +L + + ++ RE +++R+ AQG K IAR Sbjct: 120 AVAAGGIYLDPSVASHAMAHPATPTQGGDTEPSAEALSPRETDVLRLIAQGFSNKEIARR 179 Query: 169 ENCSVKTVYTHRRNAEAKLYSKI-YKLVQ 196 + SVK++ T++ A KL + ++++ Sbjct: 180 FDLSVKSIETYKARAAEKLGLRTRAEIIR 208 >UniRef50_UPI0001C314AF two component transcriptional regulator, LuxR family n=2 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C314AF Length = 228 Score = 143 bits (361), Expect = 4e-33, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 70/204 (34%), Gaps = 28/204 (13%) Query: 19 CQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLS-----------LEKIRKDFVFINLS 67 + + + GL ++ + ++ + + ++L+ Sbjct: 9 AHGAQIRVVIADDHRVVRSGLRMVLDAEPDIAVVAEAGDVPSAERAVRAHHPHVLVLDLN 68 Query: 68 TDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKEL 127 + ++ + VV++ ++ A A S RG V + D + Sbjct: 69 MPGEQS-LPAIPRLVAELPETAVVVLTMQQDPAFARE-ALRSGARGYVLKEAADDELVQA 126 Query: 128 VYVINGRFL--------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 V + D +T RE+E++R+ A G IA+ S+ Sbjct: 127 VRLAREGRTYLNPELGARMAAEPPPSGPPDDLTARELEVLRLIALGHTNAEIAQQLFLSI 186 Query: 174 KTVYTHRRNAEAKL-YSKIYKLVQ 196 +TV +HR + + K+ S +LV+ Sbjct: 187 RTVESHRAHIQQKVRRSSRAELVR 210 >UniRef50_C0A9E4 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A9E4_9BACT Length = 227 Score = 143 bits (361), Expect = 4e-33, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 71/195 (36%), Gaps = 23/195 (11%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 I +G++ L+ + + +++ D V +LS + Sbjct: 3 PISVIIVDDHQLMLEGIASLLRATPDITLVAKAQSAKEAFELVKQHNPDIVVADLSMPGV 62 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + ++ + A +++++ ++ + ++ V + + ++++ + Sbjct: 63 TG-LDLIQQIKDAGLLTRIIMLTMHRTRLTVHE-AFSVGANAFVLKSDAFEDLVDIIHRV 120 Query: 132 NGRFLRKDIKK---------DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRN 182 + K ++ RE +++ + G+ K I+R S KTV THR Sbjct: 121 HEGENTLTSKGLPPYEPACAATLSPREKDVLEGISAGLSNKEISRRLAISSKTVETHRSR 180 Query: 183 AEAKLYS-KIYKLVQ 196 KL K +LV+ Sbjct: 181 IMQKLNVTKATELVR 195 >UniRef50_A5G586 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=A5G586_GEOUR Length = 226 Score = 143 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 68/205 (33%), Gaps = 34/205 (16%) Query: 24 DKYIWSPHDAYFYKGLSELIV-----------DIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + KGL ++ R +++ D V ++L+ ++ Sbjct: 13 IRVLLVDDHKIMRKGLKAILALEHTIEVVAEAANGREAIRKADELLPDVVVMDLTMPEMN 72 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 I + ++A + ++++ A + + G + + + ++ + Sbjct: 73 G-IEAIRQIVAAHPDVRTLVLSMVLDRACVMETF-KAGATGYLLKDCAVEELVGAIHTVA 130 Query: 133 GR--FLRK------------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCS 172 +L +++ RE E++++ A G K IA S Sbjct: 131 SGEPYLCPQITSLVIRDYTKGADANSSDSCVQLSKREREVLQLIANGNSTKEIAFTFGVS 190 Query: 173 VKTVYTHRRNAEAKLYS-KIYKLVQ 196 +KTV R + KL + L + Sbjct: 191 IKTVAVQRMSVMKKLNLFNVADLTK 215 >UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVU6_9BACT Length = 216 Score = 143 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 33/203 (16%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + I + F G+ L+ L D VF++ + ++ Sbjct: 4 CRIILVDDHSLFRSGMRGLLDRYDGIRVVGEASTGEEFLAMLPATEADVVFMDFAMPGMN 63 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + L+ G +V+ ++ E + + +G + D + + Sbjct: 64 GA-ETTEKALALEPGLKVITLSMFGDENYYSRMV-QAGAKGFLMKDSPMDEVLRAIETVA 121 Query: 132 -NGRFLRKDI-----------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 G + +++ ++++ RE+EI+ +G+ + IA S Sbjct: 122 AGGTYFCEEVLRSLASRMQTAVSGYEGSDERLSTREIEILVCVCRGLSNQEIADELFISK 181 Query: 174 KTVYTHRRNAEAKLYSK-IYKLV 195 +TV HR N K K LV Sbjct: 182 RTVDKHRANILEKTGCKNTASLV 204 >UniRef50_C6W2Z0 Two component transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W2Z0_DYAFD Length = 205 Score = 142 bits (359), Expect = 5e-33, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 66/198 (33%), Gaps = 26/198 (13%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSL 71 S + + +GL L+ D + L+ D F++++ + Sbjct: 2 SVRILIVDDHPLVLEGLKSLLADAEGVQVVGTATNAIEAIAFLKGNEVDIAFLDINLPDI 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS-RDIRKELVYV 130 S I+ + + + ++ A + N G + DI + + V Sbjct: 62 SG-IDLCKKVKDQFPEVKTLALSTFNERAYVSRMIQN-GASGYLIKSSGKEDILEAIAQV 119 Query: 131 INGRFLRK-----------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTH 179 G + +T RE E++ + A+G+ IA SV TV +H Sbjct: 120 QAGGYFMNVQFDQVTPATAPKTVPFLTRREKEVLVLIAEGLTNPQIAEQLFISVTTVNSH 179 Query: 180 RRNAEAKLYSK-IYKLVQ 196 R+N K L++ Sbjct: 180 RQNLLIKFEVSNTASLIK 197 >UniRef50_Q5NZX4 Two-component response regulator n=3 Tax=Betaproteobacteria RepID=Q5NZX4_AZOSE Length = 211 Score = 142 bits (359), Expect = 6e-33, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 29/196 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIV-----------DIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + +GL I + +++ + +++S LS Sbjct: 2 IRVLVADDHFLVREGLKMTIAAMQDVEVVAEATNGGEVLAAIKTCNAHVLLLDMSMPGLS 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 ++ S G +++++ LA S G V G R+I + + Sbjct: 62 G-VDLVRRVKSEWPGLPILVLSMYGETQLAAK-VLQSGASGYVTKGKGREILLSAIRKVA 119 Query: 132 -NGRFLRKDIK--------------KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 R++ D+ ++++T RE +I+RM G IA + S KTV Sbjct: 120 SGHRYIDPDLAEKILFDVRMPTASVQEQLTHRESQILRMLQAGKSVTQIANELSVSPKTV 179 Query: 177 YTHRRNAEAKLYSKIY 192 TH+ A KL+ + Sbjct: 180 STHKIRAMQKLHCQNN 195 >UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=Mesorhizobium loti RepID=Q98DH9_RHILO Length = 215 Score = 142 bits (359), Expect = 6e-33, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 64/202 (31%), Gaps = 31/202 (15%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 K + + G+ ++ D + V ++ S L+ Sbjct: 6 IKIVIADDHPIVRSGIRAVLEQRAEWWVCGEADNGETAVRLAREHAAKIVILDYSLPVLN 65 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 + + +V++ + E+L + RG + V + Sbjct: 66 G-LEATRIIRRTMPETEVLIYTMHEDESLIRET-LRAGARGYLLKIEDDSELVAAVAALI 123 Query: 133 GR--FLRK---------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 + D+ +T+RE E++R ++G K IA SVKT Sbjct: 124 RGQTYFSPRVSECVLQDFLDGQSDVTSRNLTNREREVVRFVSEGESNKRIAARLGVSVKT 183 Query: 176 VYTHRRNAEAKLYSKIY-KLVQ 196 V +HR A KL + LV+ Sbjct: 184 VDSHRTTAMRKLGLRNAVDLVR 205 >UniRef50_C4XMF2 NarL family two-component response regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XMF2_DESMR Length = 218 Score = 142 bits (359), Expect = 6e-33, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 62/209 (29%), Gaps = 37/209 (17%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSL 71 S + + F +GL ++ + + R D +++S Sbjct: 3 SKRLLIVDDHPLFREGLKAILRRDPSYAVAGEAGSYAEALRTAKDCRPDLAVLDISLPDR 62 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 S I E + +++++ G + + D + + Sbjct: 63 SG-IQLARELRQMLPSLGILMVSMHAKVDYVAE-ALKVGALGYLTKDAATDNLLSGLRAV 120 Query: 132 NGRF-----------------------LRKDIKKDKITDREMEIIRMTAQGMQPKSIARI 168 D +T RE E++R+ +G+ K +A Sbjct: 121 AAGQPWLDPTLSVEISRSLLAKTPRAEEESHSAYDSLTPREREVMRLVVEGLSNKEVAAA 180 Query: 169 ENCSVKTVYTHRRNAEAKLYSKIY-KLVQ 196 SVKT HR + KL + +LV+ Sbjct: 181 LEISVKTAEHHRGSLMRKLGMQNSVELVR 209 >UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR family n=29 Tax=Actinobacteria (class) RepID=C7QHJ1_CATAD Length = 222 Score = 142 bits (358), Expect = 7e-33, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 57/200 (28%), Gaps = 32/200 (16%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 + + + GL + + + D V ++L Sbjct: 9 SSPLRLLIVDDHPIVRDGLRGVFDGEDGFEVVGEASDGAQALVRAAESGPDVVLMDLRMP 68 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 ++ + +V+++ +E+ + G + R+ V Sbjct: 69 TMGG-VEAIRRLRVEQPAVRVLVLTTYDTESDV-LPAIEAGATGYLLKDAPREDLIRAVR 126 Query: 130 VINGRF-------------------LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIEN 170 D +T+RE+E++R+ A G + AR Sbjct: 127 AAAAGQPVLAPTVAQRLMTRVQTPLAEPAPPGDALTERELEVLRLVASGTTNRETARKLF 186 Query: 171 CSVKTVYTHRRNAEAKLYSK 190 S TV TH +A AK + Sbjct: 187 ISEATVKTHLLHAYAKFGVR 206 >UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillaceae RepID=A0RDP4_BACAH Length = 221 Score = 141 bits (357), Expect = 8e-33, Method: Composition-based stats. Identities = 28/195 (14%), Positives = 63/195 (32%), Gaps = 29/195 (14%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 K + +GL + + + R D V ++LS + Sbjct: 14 KIKLLLVEDHHIVRRGLVFFLKTREEFEIVGEAENGEDALTFVRTERPDVVLMDLSMPKM 73 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELV--- 128 I + + +++++++ + + G + + + Sbjct: 74 DG-IEATKQIKQYDETIKILILSSFSEQDYV-LPALEAGADGYQLKEVQPEQLVASIIAI 131 Query: 129 -------------YVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 ++ ++K+ +T RE E+++ A+G K IA + + +T Sbjct: 132 YEGNANFHPKVTPALLGRSAVKKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQT 191 Query: 176 VYTHRRNAEAKLYSK 190 V TH N AKL Sbjct: 192 VKTHVSNILAKLEVD 206 >UniRef50_Q67MG8 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67MG8_SYMTH Length = 197 Score = 141 bits (357), Expect = 9e-33, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 25/173 (14%) Query: 47 DRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWY 106 + ++ D V +++S +S I AV +V+ + + E + Sbjct: 17 GEEAVELTKALKPDVVIMDISLPDMSG-IEATRLIKEAVPETRVIGLTMHEEEPFVLEF- 74 Query: 107 YNSNIRGVVYAGLSRDIRKELVYVIN----------------------GRFLRKDIKKDK 144 + + + + + GR + + + Sbjct: 75 LRAGADAYIVKRSAAADLVGAIRAVMEGQAVLDPAVTRAVVEGYVSRPGRAVGQPEEPCP 134 Query: 145 ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 +T RE EI+ + A+G+ IAR S KTV THR N KL +LV+ Sbjct: 135 LTPREREILVLIAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGIHDRTELVR 187 >UniRef50_UPI0001AEC81D LuxR family transcriptional regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC81D Length = 209 Score = 141 bits (357), Expect = 9e-33, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 73/200 (36%), Gaps = 29/200 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIV-----------DIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + +G+S+++ D + ++ K+ D + +++S +S Sbjct: 3 IRVVLADDHVLMRQGVSQMLNANPDISVVGECDDGVALIAAVLKLSPDVILMDISMPRMS 62 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 + ++ LS ++++++ ++ +G + S + E + + Sbjct: 63 GLV-AIDKILSQRSDAKILVLSMHNEVEYIE-AMRDAGAKGYILKESSGESLVEAIKKVA 120 Query: 133 G-RFLRKD--------------IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 + D +T RE E+ + G K IA + + S+KT Sbjct: 121 ANKTCFPDELTQSSSDQCQKHVSPLSVLTRREREVFFLVVAGNTSKKIAELLDMSLKTAE 180 Query: 178 THRRNAEAKLYS-KIYKLVQ 196 HR N KL +L++ Sbjct: 181 NHRSNIYKKLNLSSSAELIR 200 >UniRef50_A8MF72 Two component transcriptional regulator, LuxR family n=14 Tax=Clostridia RepID=A8MF72_ALKOO Length = 224 Score = 141 bits (357), Expect = 9e-33, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 66/201 (32%), Gaps = 34/201 (16%) Query: 22 RSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDS 70 + + + A +GL ++I L +++ D V +++S Sbjct: 9 KKINVLIADDHALVRQGLKQIIELEPDIKVIGLAADGEEAVLKTQQLSPDVVLLDISMPK 68 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 + I +++++ + + N G V + + + Sbjct: 69 QNG-IQTLRRLKDMDSTIKIIMLTFHEDREYL-FETINLGANGYVLKDAESESLIKAIRD 126 Query: 131 I-------------------NGRFLRKDIK--KDKITDREMEIIRMTAQGMQPKSIARIE 169 + N R ++ + +D++T RE E++ + A+G+ K I Sbjct: 127 VYQGLNYIYPTLATELVKEFNRREVKSQKRNNEDELTRREYEVLTLLAEGINNKEIGDCL 186 Query: 170 NCSVKTVYTHRRNAEAKLYSK 190 S KTV H N K+ Sbjct: 187 FISEKTVKNHVSNIFKKINVN 207 >UniRef50_D0LYS4 Two component transcriptional regulator, LuxR family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYS4_HALO1 Length = 212 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 69/198 (34%), Gaps = 31/198 (15%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 K + A +G+ ++ +++ D + ++++ Sbjct: 2 IKIAIADDHALLREGMRRMLSQSELIEVVGEASNGAEAVEVVKEKAPDVLLLDITMPVKD 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--- 129 I + L+ ++++++ E A + G + G + + + Sbjct: 62 G-IEATADILALNVNTKILILSMHADEQYALRT-LRAGANGFISKGARLEELLKAITDVH 119 Query: 130 ------------VINGRFLRKDIK---KDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 R +R D + + ++ RE +++ AQGM + IA + SVK Sbjct: 120 EGQRYLPDKIATSFAERHIRPDAEKPLVETLSKREFQVMTHLAQGMTNREIAGVLQISVK 179 Query: 175 TVYTHRRNAEAKLYSKIY 192 TV THR + KL + Sbjct: 180 TVDTHRSHVLKKLELRNN 197 >UniRef50_Q024Y7 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024Y7_SOLUE Length = 225 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 69/207 (33%), Gaps = 35/207 (16%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + G+ ++ + +K D V +++ + Sbjct: 2 PFDIVLVDDHKLVRDGVRMILERGSEFLVVGEAENGADAVQLCKKSSPDIVLMDIGLPGM 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + I E L +V++++ E S R V S + + + + Sbjct: 62 NG-IEATTELLRHCPSVKVIILSMYDDENSVV-SAIRSGARAFVLKKASSNELLDALRTV 119 Query: 132 --NGRFLRKDI-------------------KKDKITDREMEIIRMTAQGMQPKSIARIEN 170 G +L + + ++ RE++++R+ A+G K IA + + Sbjct: 120 ARGGSYLSSQVSDRLLQRIQRGDLETHDRSPLESLSPRELQVLRLVAEGKTSKDIAVLLD 179 Query: 171 CSVKTVYTHRRNAEAKLYS-KIYKLVQ 196 ++TV ++R+ KL + L Q Sbjct: 180 LGLQTVRSYRKTMMKKLGVNNVAGLTQ 206 >UniRef50_Q1LEP5 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderiaceae RepID=Q1LEP5_RALME Length = 214 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 63/201 (31%), Gaps = 30/201 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDRLIYLS-----------LEKIRKDFVFINLSTDSLS 72 + I + GL ++ + + ++ + ++LS + Sbjct: 2 IRVIIADDHTVVRNGLRHILERTSDFEVVGEAARGTEVPQLVRELSPHVILLDLSMPGRN 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--V 130 + + + +++++ E + + G + + E + Sbjct: 62 G-LELIRQLRTDHPALRILVLTMHAEEQYVVR-AFRAGAAGYLTKESAATELVEALRKVA 119 Query: 131 INGRFLRK--------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 G ++ D + ++DRE+E+ R G IA S KTV Sbjct: 120 AGGTYVSPAMAEKLALGLQEKPDAPHEGLSDRELEVFRRIVDGESLTQIAAALCVSAKTV 179 Query: 177 YTHRRNAEAKLYSKI-YKLVQ 196 T++ KL + LV+ Sbjct: 180 STYKMRLMEKLQLRSDAALVR 200 >UniRef50_B4T4T3 EsrB n=38 Tax=Enterobacteriaceae RepID=B4T4T3_SALNS Length = 212 Score = 141 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 72/202 (35%), Gaps = 30/202 (14%) Query: 22 RSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDS 70 + K + G+ + V +Y + D + ++LS Sbjct: 2 KEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACCAYEPDILILDLSLPG 61 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 ++ ++ + +++ A + + + G V S+ + + Sbjct: 62 ING-LDIIPQLHQRWSAMNILVYTAYQ-QEYMTIKTLAAGANGYVLKSSSQQVLLAALQT 119 Query: 131 I--NGRFLRKDIKKDK--------------ITDREMEIIRMTAQGMQPKSIARIENCSVK 174 + N R++ + ++ +T RE +++++ +G I+ + S+K Sbjct: 120 VAVNKRYIDPTLNREAILAELNADTTNHQLLTLRERQVLKLIDEGYTNHGISEKLHISIK 179 Query: 175 TVYTHRRNAEAKLYS-KIYKLV 195 TV THR N KL K+ +L+ Sbjct: 180 TVETHRMNMMRKLQVHKVTELL 201 >UniRef50_C1A5E6 NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5E6_GEMAT Length = 213 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 67/200 (33%), Gaps = 26/200 (13%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIVDIDRL-----------IYLSLEKIRKDFVFINLSTD 69 N + + + +GL+ L+ R +E R D V ++L+ Sbjct: 2 NTRTRVVLVDDHSLVRRGLAVLLRLDGRHDVVGEAGTGEAAVPLIEAERPDLVILDLNMP 61 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 + + + +V++++ L ++ G + D + Sbjct: 62 GIDG-LETLRRVRAKGLTTRVLVLSMHDETHLVGQ-ALSAGADGYLLKDSMDDELFFAIE 119 Query: 130 VI------------NGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 + R ++ +T RE E++++ A G+ ++A N S T Sbjct: 120 SVLRGQRYLAAAIDRARLQESRMRPVSLTAREREVLQLIANGLTTSAVAEALNISPHTAT 179 Query: 178 THRRNAEAKLYS-KIYKLVQ 196 HR N KL +LV+ Sbjct: 180 RHRANLMQKLNVHNQVELVR 199 >UniRef50_C0A2L6 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2L6_9BACT Length = 240 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 63/202 (31%), Gaps = 25/202 (12%) Query: 18 ECQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINL 66 + +NR + +G+ L+ + + R D + +L Sbjct: 15 QERNRPVTVAIADDHHVVRQGIEALLRMCPDMEYVGGASTVDEARQLVHRTRPDVLVSDL 74 Query: 67 STDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKE 126 S S + ++V++ ALA ++S V + D Sbjct: 75 SMPGGSG-VGFLRNLRRECPDTRIVVLTMHA-TALAMQDAFDSGAHAFVAKDDAFDTLVS 132 Query: 127 LVYVINGRF-----------LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 ++ ++ + ++ RE E+++ +G+ K I S KT Sbjct: 133 IIRRVHSGEEFLFSRTMKEVTGGSQETPRLAPREREVLQGITKGLSTKEIGAQLFLSPKT 192 Query: 176 VYTHRRNAEAKLYS-KIYKLVQ 196 V +R K K +L+ Sbjct: 193 VEVYRGRLMKKFNVTKGTELIH 214 >UniRef50_B9PAD6 Predicted protein n=33 Tax=cellular organisms RepID=B9PAD6_POPTR Length = 326 Score = 141 bits (356), Expect = 1e-32, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 61/204 (29%), Gaps = 30/204 (14%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKI---------------RKDFVFIN 65 + + + + A G+ + L + D V + Sbjct: 112 SSAARVLLIDDHALVRDGMRMHLTLQPGLEVVGEADDGEAALAWLAAAEAGRMPDLVITD 171 Query: 66 LSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRK 125 + + I V++++ + + RG V D Sbjct: 172 IGMRGMGG-IALAGALHDRYPELAVLIVSMHDNLEYVRQ-AIRAGARGYVLKDAPADELL 229 Query: 126 ELVYVINGRFLRKDIK------------KDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 + + + + D +T RE +I+ +G K IA SV Sbjct: 230 AAIQAVLAGRVFYSARIARGMAAQAVSPLDALTPRERDILHGIGRGQANKDIAVQLGVSV 289 Query: 174 KTVYTHRRNAEAKLYSK-IYKLVQ 196 +TV THR N + KL + +LV+ Sbjct: 290 RTVETHRLNLKRKLGIEGRAELVK 313 >UniRef50_Q46SR4 Two component transcriptional regulator, LuxR family n=14 Tax=Burkholderiales RepID=Q46SR4_RALEJ Length = 232 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 71/190 (37%), Gaps = 26/190 (13%) Query: 25 KYIWSPHDAYFY----------KGLSELI-VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + G++ ++ D + + + D V ++L ++ Sbjct: 28 TILIVDDHPAVRVVLKTHLSQVLGVTHVLEADNGQAAVEIVRQYAPDVVILDLDIPRING 87 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS-RDIRKELVYVIN 132 ++ + G ++++I+ + A + G V +I + + V+ Sbjct: 88 -LDVIPRLKAIQPGVRILVISGQDQNTFAPR-ARQAGANGYVSKTQELPEIVRCVESVLA 145 Query: 133 GRFLRKDI------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 G + D+ + ++D+E+ I++M A+GM K I + S KTV TH+ Sbjct: 146 GYSVMPDVDGGRADGVDETRRLGSLSDKELVIMQMLAKGMSNKQIGEVLFISNKTVSTHK 205 Query: 181 RNAEAKLYSK 190 KL ++ Sbjct: 206 TRIMEKLGAR 215 >UniRef50_Q1GZT3 Two component transcriptional regulator, LuxR family n=10 Tax=Proteobacteria RepID=Q1GZT3_METFK Length = 215 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 75/205 (36%), Gaps = 31/205 (15%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRK-----------DFVFINLSTD 69 + K + + A +GL +++ + + + ++ K D V +++S Sbjct: 4 TSTIKVVIADDHAILREGLKQILAETEDIEVVADAKNAAEAIKLAGTKGLDVVVLDISLP 63 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 S I N G V++++ + +A A + G + + D + Sbjct: 64 DRSG-IEACNIIKKEHPGVAVLMLSMHREDAYAIR-ALRAGAVGYLSKQSASDQLVTAIR 121 Query: 130 VI--NGRFLRKDIKK---------------DKITDREMEIIRMTAQGMQPKSIARIENCS 172 + +++ ++ D +++RE + + M A G+ IA + S Sbjct: 122 TVAKGKKYISAEVALALADQVSGGLEKPIHDTLSNREFQTLTMIASGLSVSEIAENLSLS 181 Query: 173 VKTVYTHRRNAEAKLYSK-IYKLVQ 196 VKTV +R KL + +L Sbjct: 182 VKTVSMYRARLLEKLNLRHNAELTH 206 >UniRef50_B2A8K6 Two component transcriptional regulator, LuxR family n=9 Tax=Clostridia RepID=B2A8K6_NATTJ Length = 228 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 69/208 (33%), Gaps = 39/208 (18%) Query: 19 CQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLS 67 +N++ + + + A F +GL +++ + ++ ++ + + ++++ Sbjct: 5 DENKTIRILLADDHALFRQGLKKILDMEEDLAVCGEAQNGEEVVDKVKLLKPNIILMDIN 64 Query: 68 TDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKEL 127 L+ + +V+ + + E + G + + + Sbjct: 65 MPLLNG-VEATKYVKEVSPETKVIALTIHEDEEYL-FEIVKEGAAGFLLKDVETPTLVQA 122 Query: 128 VYVINGRFL--------------------------RKDIKKDKITDREMEIIRMTAQGMQ 161 + +N + + ++T RE EI+ + AQG Sbjct: 123 IQEVNKGNSFIHPTITHKLLGEFNRLAQNSPRNIKSDEAVQSELTGREKEILELMAQGYT 182 Query: 162 PKSIARIENCSVKTVYTHRRNAEAKLYS 189 K I++ S KTV H N K+ Sbjct: 183 NKEISKELYISEKTVKNHVSNILRKMDV 210 >UniRef50_Q0EZ33 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ33_9PROT Length = 217 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 33/206 (16%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIVDID-----------RLIYLSLEKIRKDFVFINLSTD 69 +R+ G L+ D + EK D V +++S Sbjct: 4 SRAITVQLVDDHEVVRIGFRYLLEADDLMQVVAESASGKQACRDYEKWLPDIVIMDISLP 63 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 +S + L A ++++++ + RG V + ++ Sbjct: 64 DISG-LEVMRRILLAHPEARILMLSMHS--GMVAERAMQMGARGFVCKRSGARLLISAIH 120 Query: 130 --VINGRFLRKDIKKD----------------KITDREMEIIRMTAQGMQPKSIARIENC 171 + R+L + +T RE+E+ + G IA + Sbjct: 121 EVMAGRRYLDDETGVQLPLLHSASETLKPLPSSLTRRELEVCLLLTDGRSVSDIAAALHL 180 Query: 172 SVKTVYTHRRNAEAKLYS-KIYKLVQ 196 S KTVY+HR++ KL + +LVQ Sbjct: 181 SEKTVYSHRQHIMEKLGVATMAELVQ 206 >UniRef50_B2A6W2 Two component transcriptional regulator, LuxR family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6W2_NATTJ Length = 215 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 68/205 (33%), Gaps = 35/205 (17%) Query: 24 DKYIWSPHDAYFYKGLSELIVDID-----------RLIYLSLEKIRKDFVFINLSTDSLS 72 + A KGLS L+ D + + ++ D V ++LS Sbjct: 3 ISVLVVDDHAVLGKGLSMLLNSQDDMEVCGQVGTAKEALDTCKEKCPDVVLLDLSLPDKQ 62 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 E + +V+ + + EA + G + + D + + Sbjct: 63 GH-EIIKELKESCS-ARVLALTMHEDEAY-FKRVVEAGGDGYILKKAADDELISAIRSVY 119 Query: 133 GR---------------FLRKDIKKDK-----ITDREMEIIRMTAQGMQPKSIARIENCS 172 + D + ++DRE E++++ A G K IA S Sbjct: 120 QGEVIVDKTFTKLLIDYYRNPDKQSGTEKNYDLSDREKEVLQLIALGYTNKEIAEKLYIS 179 Query: 173 VKTVYTHRRNAEAKLYS-KIYKLVQ 196 +KTV TH + KL + +LV+ Sbjct: 180 IKTVETHIARIKEKLGLNRRSELVR 204 >UniRef50_C4V5Y3 Response regulator n=3 Tax=Selenomonas RepID=C4V5Y3_9FIRM Length = 223 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 24/212 (11%), Positives = 76/212 (35%), Gaps = 42/212 (19%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + + + + A +G+ ++ + + ++ D + ++++ L Sbjct: 2 AIRILLADDHALLRQGIKRVLNFEDDLEVVGEAEDGQEALARTLMLKPDILLLDINMPGL 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + ++ + A +++ + S+ + G + + ++ + ++++ Sbjct: 62 TG-LDVAKQLKQARSRVKIIALTIHDSDNYVLE-LLKNGALGYLLKDVEPNVLIKAIHMV 119 Query: 132 N---------------------------GRFLRKDIKKDKITDREMEIIRMTAQGMQPKS 164 N + + + + +++T REM+++ A+G+ + Sbjct: 120 NEGNPFVYPKLAERLFGTSSISGDVGRMAKEIWDESRGERLTPREMDVLGCIAKGLSNQD 179 Query: 165 IARIENCSVKTVYTHRRNAEAKLYSKIYKLVQ 196 I + S KTV H + KL K+ Q Sbjct: 180 IGKALGLSEKTVKNHLTSVFHKL--KVNDRTQ 209 >UniRef50_C7RKP7 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RKP7_9PROT Length = 216 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 65/203 (32%), Gaps = 29/203 (14%) Query: 17 MECQNRSDKYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFIN 65 M+ + + A GL +I + Y + +R D V ++ Sbjct: 1 MKAAGKQVTVMVVDDHAALRAGLRSVIDSDPGLRVVLDVPSGEVAYAQYQTLRPDTVVMD 60 Query: 66 LSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRK 125 LS + I S +++ S L + G V G D Sbjct: 61 LSMEGFGG-IEAIRRIRSRDPQAAILVYTVHNSRVLLER-ALEAGALGFVTKGSDIDTLL 118 Query: 126 ELVYVINGR--FLRKD--------------IKKDKITDREMEIIRMTAQGMQPKSIARIE 169 + + I R F+ D + D++T RE ++ ++ ++G A I Sbjct: 119 QAIKRIASRESFVSPDMLPALLDRHFPAGGVSFDRLTQREFQVFKLLSEGHALPECADIL 178 Query: 170 NCSVKTVYTHRRNAEAKLYSKIY 192 N S KTV H AKL Sbjct: 179 NLSSKTVSNHFTQIRAKLGVDSP 201 >UniRef50_C4V1Z2 Transcriptional regulator n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V1Z2_9FIRM Length = 209 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 34/201 (16%) Query: 27 IWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSEFI 75 + G+ L+ + L + D V +++S + + Sbjct: 1 MIVDDHLLIRAGIKLLLKNTSAYTVTAEAESGEEALRLLAQQPIDLVIMDISMPGMGG-L 59 Query: 76 NRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI--NG 133 E + ++++++ + E Y G + + + + + V+ Sbjct: 60 ACIREIRAHYPAVKILVLSMHEDEEYI-YKAMQYGAMGYLPKTSADNELFDALQVLSQGR 118 Query: 134 RFLRK------------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 R+L D + +T RE E+ G IA + SVKT Sbjct: 119 RYLSPNAQQSLMDIMFRPAEEAADDPRSVLTAREREVFDELIHGYTITEIAEQLHLSVKT 178 Query: 176 VYTHRRNAEAKLYS-KIYKLV 195 V TH+++ KL+ + +LV Sbjct: 179 VDTHKKHIYEKLHCSRRSELV 199 >UniRef50_A3D3Y4 Two component transcriptional regulator, LuxR family n=46 Tax=Proteobacteria RepID=A3D3Y4_SHEB5 Length = 214 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 70/205 (34%), Gaps = 30/205 (14%) Query: 20 QNRSDKYIWSPHDAYFYKGLSELIV-----------DIDRLIYLSLEKIRKDFVFINLST 68 + + + + GL + + +Y K+R D VF++L Sbjct: 5 HGKVINILVVDDHSLIFDGLLGCLAPYPELNLIGSVEDGLAVYEKCLKLRPDLVFMDLKL 64 Query: 69 DSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELV 128 + F + + ++++ A E A + G V + + Sbjct: 65 PGMGGF-DVIRQLRQRWPEMMIIMLTATVEEKSARE-ALDVGANGYVLKYSPKSTLLAAI 122 Query: 129 YVI--NGRFLRKDIKKDK--------------ITDREMEIIRMTAQGMQPKSIARIENCS 172 + F+ + + + +T RE +++++ +G + + IA Sbjct: 123 KCVCKGKNFIDPSLDERQIAALSGVVDGDMPLLTPREQQVLKLICEGRRNRDIAEDLVIG 182 Query: 173 VKTVYTHRRNAEAKLY-SKIYKLVQ 196 +KTV THR N KL + +L+ Sbjct: 183 LKTVETHRMNLMRKLNAHNVAELMH 207 >UniRef50_B2KBW2 Two component transcriptional regulator, LuxR family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBW2_ELUMP Length = 215 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 35/206 (16%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDRLIYL-------------SLEKIRKDFVFINLSTDS 70 + + + A G+ ++ + I + +++ D ++++ Sbjct: 2 IRILLADDHALVRDGIKSILERKGKNISVVAEMGNGKEMLDYAVKNKNIDVYVVDIAMPI 61 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 L+ I + L +V++++ A + + RG V S D E + Sbjct: 62 LNG-IAAVQKLLKINPDAKVIVLSMYDDRASVEK-AFKAGARGFVVKVSSADEIIEAIKE 119 Query: 131 INGRFL------------------RKDIKKDK-ITDREMEIIRMTAQGMQPKSIARIENC 171 ++ K +T +E +I+++ A+G K IA+ Sbjct: 120 VSAGRFYLCSKVSKFVVQGFLGKASPSKKDPSGLTPKEKQILQLIAEGFSSKEIAKEFGL 179 Query: 172 SVKTVYTHRRNAEAKLY-SKIYKLVQ 196 S+ TV+ HR N KL K +LV+ Sbjct: 180 SLNTVHVHRNNIMRKLDIHKQAELVR 205 >UniRef50_B8FFJ9 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfobacteraceae RepID=B8FFJ9_DESAA Length = 212 Score = 140 bits (354), Expect = 2e-32, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 65/198 (32%), Gaps = 31/198 (15%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + GL +I D + + D +++S + Sbjct: 2 IRVLLADDHVIVRAGLRRIIEDSEDIKVIVEASNGKEAIDLTLEHCPDVAVVDISMPGID 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + + + + ++++ + E + G + + + + + Sbjct: 62 G-LEVVSRLHAELPDLPMLILTMHEEEQYVVR-AIEAGAMGYMTKKSAPEQLVTAIRKLH 119 Query: 132 -NGRFLRKDIK----------------KDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 RFL ++ D ++ RE++++R A G + IA + SVK Sbjct: 120 SGSRFLTEEAAELLALRVSRWSKGGSLLDSLSKRELQVLRHLASGHTNREIADSYHISVK 179 Query: 175 TVYTHRRNAEAKLYSKIY 192 TV T+R KL + Sbjct: 180 TVDTYRARLLKKLNLRNN 197 >UniRef50_A7LKW1 Putative two component transcriptional regulator n=1 Tax=uncultured Methylophaga sp. RepID=A7LKW1_9GAMM Length = 217 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 31/199 (15%), Positives = 70/199 (35%), Gaps = 29/199 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIVD----------IDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + A +G +L+ Y + ++ I+L+ + Sbjct: 6 TTILLIDDHAILREGYQQLLESAGFEVIGQSGNAEEGYQAFIALQPKVCIIDLTMPG-TG 64 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING 133 + + K ++++ + + LA G + S D+ E V + Sbjct: 65 GLECVRRICNRDKDARILVCSMHEETTLAMR-ALELGAIGYITKSCSSDVLIEAVKSVAE 123 Query: 134 RF----------------LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 + ++ D K D ++ +E + RM A+GM + I++ + KTV Sbjct: 124 KRHYLGAEVARSIAMEKLIKTDQKIDSLSHQEFAVFRMVAEGMSIEEISKSLTLAPKTVS 183 Query: 178 THRRNAEAKLY-SKIYKLV 195 ++ N KL +K+ ++ Sbjct: 184 NYKTNMMRKLGTTKLADII 202 >UniRef50_A1WT06 Two component transcriptional regulator, LuxR family n=1 Tax=Halorhodospira halophila SL1 RepID=A1WT06_HALHL Length = 216 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 29/202 (14%), Positives = 68/202 (33%), Gaps = 31/202 (15%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + + + ++ + ++ + D V ++L + Sbjct: 2 IRVVLADDHRLIRQAIDGMLRDIPDIQIVAHAENAEHAVAAVREQEPDVVLMDLQMPGMG 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + + V+ + +S + + +G V+ G RD E + + Sbjct: 62 G-VEAIRRLYRSHPKVGVIALTVYQSGPYPAH-ALRAGAKGYVHKGADRDELIEAIRSVY 119 Query: 132 -NGRFLRKDIK---------------KDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 R++ ++ D +T RE E++ G + SIA+ S KT Sbjct: 120 LGRRYICHEVARHVALNSLDGTGESPFDHLTPREFEVLMRILNGQRGTSIAKDLCLSPKT 179 Query: 176 VYTHRRNAEAKLYSKI-YKLVQ 196 V T+R +L + +L + Sbjct: 180 VSTYRSRIFERLGVRNDAQLTR 201 >UniRef50_C4ZM15 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZM15_THASP Length = 226 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 63/196 (32%), Gaps = 32/196 (16%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + + + G+ L+ R ++ D V ++++ D + Sbjct: 5 RVLLVDDHSLVRAGIRALLGSIAGVAGIEEASSGRQAVELAATMQPDLVLMDIAMDDMDG 64 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING 133 + +A +VV+++ + RG + + + + + Sbjct: 65 -LAATRTIAAAHPHIKVVILSMHDTGDFFEQ-ALRCGARGYLLKDAAVAELEMAIAAVMR 122 Query: 134 R--FLRK-----------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 +L + +T R+ EI+ + G+ K IAR + SVK Sbjct: 123 GDVYLSPAVSRHLVGNMLARPPEDERAASVLTPRQTEILELIGSGLGTKEIARRLDLSVK 182 Query: 175 TVYTHRRNAEAKLYSK 190 TV HR +L + Sbjct: 183 TVEAHRAQIMERLGVR 198 >UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C48EF Length = 220 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 26/192 (13%) Query: 24 DKYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + +GL LI + + ++LS Sbjct: 4 TRIVLADDHVILREGLRALISAQPDLEVVGEAASGTETVDCVRATEPRVLCLDLSMPGW- 62 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL-SRDIRKELVYVI 131 +V+++ A + G S D+ + V Sbjct: 63 GSATTITRVTQLAPRTRVLVLTMHNDPAYV-RSALAAGAAGYFLKTTPSPDLLAAIRAVA 121 Query: 132 NGRFL------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTH 179 G + ++ +++ RE E++ + +G+ + IA SVKTV T+ Sbjct: 122 TGARVIDPALGDVLGGPPPPAERSQLSRRETEVLELLVKGLTHQEIADQLFLSVKTVETY 181 Query: 180 RRNAEAKLYSKI 191 R K K Sbjct: 182 RARLREKTGLKT 193 >UniRef50_B7A7I0 Two component transcriptional regulator, LuxR family n=2 Tax=Thermaceae RepID=B7A7I0_THEAQ Length = 192 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 13/177 (7%) Query: 25 KYIWSPHDAYFYKGLSELI----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSEF 74 + + + F GL + + + ++ D V ++L + Sbjct: 2 RVLIADDHPLFRLGLKAGLEAQGLAVVAEAENGQEALDKALALKPDAVLLDLRMPGMDGL 61 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS-RDIRKELVYVING 133 +G + + + AL + LS ++++ L+ V+ G Sbjct: 62 TCARKLRERGYRGL-IAFLTTYQEPALLKEAAL-AGADAYFSKELSAPELKRRLLRVMQG 119 Query: 134 RFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 +T RE E++ + AQG+ K +A+ S TV H N AKL ++ Sbjct: 120 EERLTPPDLPSLTPREGEVLALLAQGLSVKEMAKALGLSPDTVKDHLENLYAKLEAR 176 >UniRef50_B4SLZ0 Two component transcriptional regulator, LuxR family n=18 Tax=cellular organisms RepID=B4SLZ0_STRM5 Length = 217 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 61/186 (32%), Gaps = 24/186 (12%) Query: 26 YIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSEF 74 + GL+ L+ ++++ D V ++L L Sbjct: 10 VLVVDDHPLLRDGLAALLGAQPDLRLLGEAADGEEAIACYQRLQPDVVLMDLQMPRLDG- 68 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGR 134 + + +++++ + + A + + + R + + ++ G Sbjct: 69 VEAIVRIRALDPRARIIVLTTYRGDVRAVR-ALQAGASAYLLKDMLRHELVDTIRMVAGG 127 Query: 135 FLRK-----------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNA 183 + +D+++ RE E++R A G+ K I S +TV H ++ Sbjct: 128 RRAPIPPAVAASIAAHVVEDRLSPRETEVLRHVAGGLSNKRIGERMQISEQTVKAHMKSL 187 Query: 184 EAKLYS 189 KL Sbjct: 188 MDKLGV 193 >UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepID=Q2W7M4_MAGSA Length = 209 Score = 139 bits (352), Expect = 3e-32, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 62/197 (31%), Gaps = 29/197 (14%) Query: 25 KYIWSPHDAYFYKGLSELIV----------DIDRLIYLSLEKIRKDFVFINLSTDSLSEF 74 + + + +GL L+ + + + D V ++LS L Sbjct: 4 RILIAEDQQLVRQGLVALLAVDDVTIVGEAEDGKGAIEMARTLAPDVVLMDLSMPELDG- 62 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI--N 132 + +V+++ E + G L + + Sbjct: 63 VEATRRIKQVAPQVRVLVLTVANCERRVAE-ALAAGADGYALKKLGHGELMAAINAVCAG 121 Query: 133 GRFLRK--------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 +L D+ +T RE E++++ A+G + + IA ++KTV T Sbjct: 122 KTYLGPGLSEDLVKEYLEGSDMGGGSLTAREREVLQLIARGHKNREIADELGIAIKTVET 181 Query: 179 HRRNAEAKLY-SKIYKL 194 HR KL +L Sbjct: 182 HRTKIMQKLDLHNSAEL 198 >UniRef50_B4CVL8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVL8_9BACT Length = 217 Score = 139 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 76/206 (36%), Gaps = 35/206 (16%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 K + + +G+ ++ R +EK++ V ++++ L+ Sbjct: 4 TKVLIADDHQVMRRGVRAVVELLEGWEVCGEASTGREAVEMVEKLQPQIVVMDVTMPELN 63 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKEL----- 127 + + ++++ ++E L + + R + R+ + Sbjct: 64 G-LEATRQIKKIAPATEILMFTGLETEELIRQ-VFEAGARSYILKTDGREQLEAALTALA 121 Query: 128 ---------------VYVINGRFLRKDIKKD-KITDREMEIIRMTAQGMQPKSIARIENC 171 ++G+ ++ D ++TDRE EI+++ A+G K +A Sbjct: 122 AHKPYFTTQVGEILFAKFLHGKPKDEEQTVDGRLTDREREIVQLLAEGASNKEVADSLGI 181 Query: 172 SVKTVYTHRRNAEAKLYSKI-YKLVQ 196 SVKTV THR KL K LV+ Sbjct: 182 SVKTVETHRAAIMKKLKFKSFSDLVR 207 >UniRef50_B9XC41 Two component transcriptional regulator, LuxR family n=7 Tax=Verrucomicrobia RepID=B9XC41_9BACT Length = 267 Score = 139 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 67/206 (32%), Gaps = 35/206 (16%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + +GL L+ R +K+ D + ++++ ++ Sbjct: 31 IRVLLADDHTVVRQGLRALLSGEKDIQIVGEAGTGREAVQMAQKLTPDVILMDIAMPLMN 90 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 + + +V+++++ + + G + + + V + Sbjct: 91 G-LEATRKIAEVAPSAKVLVLSSYGEDDYV-QKLTEAGASGYLIKHAAANDLVAAVRETH 148 Query: 133 GR--FLRKDIKKD-------------------KITDREMEIIRMTAQGMQPKSIARIENC 171 F I K ++T+RE+E + G K IA Sbjct: 149 KGNAFFSPGIAKRLRDQVRAGFANGNGTKASFELTERELETLGHIVAGKPNKVIACDMGI 208 Query: 172 SVKTVYTHRRNAEAKLY-SKIYKLVQ 196 S+KTV HR+ KL ++ L + Sbjct: 209 SIKTVEKHRQQVMNKLNIHEVASLTR 234 >UniRef50_A7NP18 Two component transcriptional regulator, LuxR family n=12 Tax=Bacteria RepID=A7NP18_ROSCS Length = 222 Score = 139 bits (351), Expect = 5e-32, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 67/196 (34%), Gaps = 30/196 (15%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + + + F +GL EL+ R + +R D V +++ + Sbjct: 5 PIRILLADDHRMFRQGLRELLERKGGFIIVGEASTGREVLAQAAALRPDIVLLDIQMPEI 64 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + + +V+++ + + + + R + D +++ + Sbjct: 65 DG-VAVARQLAQTHPDVKVIMLTMYRQDQHL-FEAIKAGARAYLLKDADADELIDVIERV 122 Query: 132 NG-----------------RFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 + R L D +++T+RE +I+ + A+G ++IA+ S K Sbjct: 123 HRGEAALDPTVTLRVFDEFRRLSIDQDAEQLTERERDILTLLAEGHDNRTIAQRLFLSEK 182 Query: 175 TVYTHRRNAEAKLYSK 190 TV KL Sbjct: 183 TVGNRLSEIFQKLGVS 198 >UniRef50_C6W5G0 Two component transcriptional regulator, LuxR family n=2 Tax=Flexibacteraceae RepID=C6W5G0_DYAFD Length = 219 Score = 139 bits (351), Expect = 5e-32, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 60/201 (29%), Gaps = 37/201 (18%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 K + F KG ++ + + L D VF++L + Sbjct: 5 KLGIADDHELFRKGFISMLSGIPDFEFILEAGNGQELLDRLPANTPDIVFMDLQMPVMDG 64 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI-- 131 I ++++++ + + ++G + S D ++ + + Sbjct: 65 -IQATEAAFERFPNIKIIVVSMYNEDRFVIHMLEK-GVQGYLLKDTSPDEVEKAIRRVHE 122 Query: 132 ----------------------NGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIE 169 N + ++ RE E++++ G+ I Sbjct: 123 EGFYYNDFVSKAMHRKMVNRQVNKHPFFPNACNVALSSREKEVLQLICDGLSTTEIGDKL 182 Query: 170 NCSVKTVYTHRRNAEAKLYSK 190 SV+TV HR K +K Sbjct: 183 FISVRTVEGHRLRVLEKTGTK 203 >UniRef50_A0R9S0 DNA-binding response regulator n=37 Tax=Bacillus RepID=A0R9S0_BACAH Length = 216 Score = 139 bits (351), Expect = 5e-32, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 65/198 (32%), Gaps = 31/198 (15%) Query: 22 RSDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDS 70 + K + A+ + ++ D + +E R D + ++++ Sbjct: 3 KMIKILVVDDHAFLRDAIRSILEDESDMNVVGEASSGDGVLEKVEACRPDCILMDINLPG 62 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 + I +V++ + + + G + S + + + Sbjct: 63 KNG-IEATELVKKNYPNCRVLVFTMYEHDEYLMD-ALQAGADGYLLKDSSSEQVVAAIRM 120 Query: 131 I------------------NGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCS 172 + + + ++ + ++++T+RE EI+ +G+ K IA S Sbjct: 121 LYRGDSVIHPRMTKKLITYHQQKMKVESNENELTEREKEILFELVKGLSNKEIAEALYIS 180 Query: 173 VKTVYTHRRNAEAKLYSK 190 KTV H KL K Sbjct: 181 DKTVKIHINKIFKKLNVK 198 >UniRef50_A5FAZ3 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteroidetes RepID=A5FAZ3_FLAJ1 Length = 219 Score = 139 bits (351), Expect = 5e-32, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 70/202 (34%), Gaps = 37/202 (18%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + + G+ L+ + + + D + +++ +L+ Sbjct: 5 IRVVLADDHVFVRDGIKSLLENEANIEVVGEAIDGADALEVVTATKPDLLIVDIRMPNLT 64 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 I + S ++++++ +SE + G + G S++ + ++ + Sbjct: 65 G-IEVVEKLRSENNNVKIIMLSMHESEEYVLKS-IKAGADGYLLKGSSKEEFLKALHAVS 122 Query: 132 -NGRFLRKDI----------------------KKDKITDREMEIIRMTAQGMQPKSIARI 168 G++ DI ++ IT RE EI+ + G K IA Sbjct: 123 SGGKYFSGDISSILISQLTNSTASLEPKQTLGEEMMITKREKEILTLLLSGKGNKEIAEA 182 Query: 169 ENCSVKTVYTHRRNAEAKLYSK 190 S +T HR N KL K Sbjct: 183 LEISKRTAEVHRFNLMKKLKVK 204 >UniRef50_D1AEE5 Two component transcriptional regulator, LuxR family n=37 Tax=Bacteria RepID=D1AEE5_THECD Length = 244 Score = 139 bits (351), Expect = 5e-32, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 74/208 (35%), Gaps = 37/208 (17%) Query: 18 ECQNRSDKYIWSPHDAYFYKGLSELI--------VDIDRLIYLSLEKIRK--------DF 61 + + + A +G+ ++ V ++E++R+ D Sbjct: 22 PDGPAKTRILLADDHALVRRGVRLILDGEPDLWVVGEAGDGAEAIEQVRRRAGTPQEVDL 81 Query: 62 VFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSR 121 ++++ ++ + E +++++ +E + + G V L+ Sbjct: 82 AVLDVAMPRMTG-LQAARELSRMYPRLRILILTMHDNEQYL-FEALKAGAAGYVLKSLAD 139 Query: 122 DIRKELVY---------------VINGRFLRKDIKKD----KITDREMEIIRMTAQGMQP 162 + V+ +L + + + +T RE EI+++ A+G Sbjct: 140 RDLVQACRAAVRGEPFLYPGAISVLIRSYLEQARQGEEPETPLTPREEEILKLVAEGHSS 199 Query: 163 KSIARIENCSVKTVYTHRRNAEAKLYSK 190 + IA SVKTV HR N AKL K Sbjct: 200 REIADTLFISVKTVERHRANILAKLGMK 227 >UniRef50_C6C0G1 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C0G1_DESAD Length = 218 Score = 139 bits (350), Expect = 6e-32, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 62/197 (31%), Gaps = 34/197 (17%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + + A +GL ++ + ++ D ++LS S Sbjct: 6 TVVIADDHALVREGLKTILKSQSGISVLGMAENGEEAVRLCRRLNPDVALMDLSMPIKSG 65 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING 133 LS + + + A Y ++ G V S + + Sbjct: 66 VQAIQE--LSGEGKTKFLALTAHVEPDHI-YSALDAGASGYVLKTSSSKELVMAIETVMQ 122 Query: 134 R--FLRKDIK------------------KDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 +L DI + +T+RE E+++ G + + IA + SV Sbjct: 123 GKVYLAPDISAEVAKGFLQRDRSNSCDSLESLTEREREVLKQVLAGYKNREIADLLVISV 182 Query: 174 KTVYTHRRNAEAKLYSK 190 KTV HR N KL + Sbjct: 183 KTVEKHRSNFMKKLGLR 199 >UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1Z3_LEPCP Length = 235 Score = 139 bits (350), Expect = 6e-32, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 71/200 (35%), Gaps = 31/200 (15%) Query: 26 YIWSPHDAYFYKGLSELIVDID----------RLIYLSLEKIRK-DFVFINLSTDSLSEF 74 + +GL ++ L + + + D ++LS ++ Sbjct: 15 ILIVDDHVIVREGLQRILEATGAGWVVAEASSGFQALEVMRHQPIDLAIVDLSMPGMNG- 73 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI--N 132 ++ + +V++++ E A + + G V + V + Sbjct: 74 LDLIKRIRTEFPRVRVLVLSMHAEEQYAMR-AFKAGANGYVTKDGASAELVNAVRKVATG 132 Query: 133 GRFLRKDIKKD---------------KITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 G ++ + + +++DRE+E++R G + IA + SVKTV Sbjct: 133 GAYVTASLAERVVLQLNGATTAPGHAQLSDRELEVLRRIVAGERITDIAEALHLSVKTVS 192 Query: 178 THRRNAEAKLYS-KIYKLVQ 196 TH+ + KL + L++ Sbjct: 193 THKSRIQEKLQLPTMAALIR 212 >UniRef50_A1TUY1 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderiales RepID=A1TUY1_ACIAC Length = 219 Score = 139 bits (350), Expect = 6e-32, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 63/204 (30%), Gaps = 25/204 (12%) Query: 16 HMECQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFI 64 + R + A GL + + ++ V + Sbjct: 5 AIAPLERPVRLFLVDDHALVRDGLRARLGSLPWVAIVGEASGAEEAGPLIARLAPGIVLM 64 Query: 65 NLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIR 124 ++ +S ++ L+ +V++++ + G V Sbjct: 65 DVGMKDVSG-LDFAARLLAGDGAPRVLMLSMYDNPEYV-QRALQVGASGYVLKDAPASEL 122 Query: 125 KELVY-----------VINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 + ++ R R K +T RE EI+ +G K IA SV Sbjct: 123 VAALEAVAAGGTFLSPAVSQRLFRNQAPKPLLTPRESEILAALGRGASSKQIACDLGLSV 182 Query: 174 KTVYTHRRNAEAKLYS-KIYKLVQ 196 +TV HR+N +L + +L++ Sbjct: 183 RTVEAHRQNIRRRLELGSLAELIR 206 >UniRef50_Q3JL34 DNA-binding response regulator n=30 Tax=pseudomallei group RepID=Q3JL34_BURP1 Length = 223 Score = 139 bits (350), Expect = 7e-32, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 74/203 (36%), Gaps = 31/203 (15%) Query: 17 MECQNRSDKYIWSPHDAYFYKGLSELI------VDIDR-----LIYLSLEKIRKDFVFIN 65 M + + ++ + G+ ++ +D+D + R D V ++ Sbjct: 1 MVVERKCERVLVVDSHPIVRDGIEVVLGKAYAGIDVDGAADMAEASDRCGRDRPDLVLLD 60 Query: 66 LSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRK 125 + + E L A G + V+ A SEA A G + S D Sbjct: 61 VMLPGED-PLPAMGEILRAHPGLRFVVFTALGSEARAAD-AIRFGASGYLLKWCSPDGIV 118 Query: 126 ELVYVINGRFLRKDIKKDK------------------ITDREMEIIRMTAQGMQPKSIAR 167 + + + + D D+ +T RE +++++ A GM+ + IA Sbjct: 119 QAIRRVMAGRVHIDPSLDEARVASAAGGRTLASPVDELTRREKQVLKLIADGMRNREIAS 178 Query: 168 IENCSVKTVYTHRRNAEAKLYSK 190 + N S KTV HR+ KL ++ Sbjct: 179 LLNISPKTVDCHRQRLMQKLGAR 201 >UniRef50_A1ZEE6 Two-component response regulator n=2 Tax=Microscilla marina ATCC 23134 RepID=A1ZEE6_9SPHI Length = 213 Score = 139 bits (350), Expect = 7e-32, Method: Composition-based stats. Identities = 26/202 (12%), Positives = 64/202 (31%), Gaps = 35/202 (17%) Query: 28 WSPHDAYFYKGLSELIVD------------IDRLIYLSLEKIRKDFVFINLSTDSLSEFI 75 +GL +L+ D+++ + R D V +++ + + Sbjct: 6 IVEDHTIVRQGLKQLLAKYAEMKVLAEFGVPDQIMDNLAKGERPDIVLCDINLPGMDG-L 64 Query: 76 NRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI--NG 133 + ++++++ + E +++ G + + I Sbjct: 65 ALTEKIKQKYPDQKIIILTMHQKEFYVLK-AFDAGADGYFHKDTEESELIMGIKKIYNGQ 123 Query: 134 RFLRKDIKK------------------DKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 ++ + + + +T RE E++ G+ + I S +T Sbjct: 124 KYFCQSVSQILINRLLDTKNSSGKTLLPTLTFREKEVLEQVVAGLGNREIGDKLCISTRT 183 Query: 176 VYTHRRNAEAKLYSK-IYKLVQ 196 V HR N K K +LV+ Sbjct: 184 VENHRANILRKFGLKNTVELVK 205 >UniRef50_B6BTE7 Two component transcriptional regulator, LuxR family n=2 Tax=Betaproteobacteria RepID=B6BTE7_9PROT Length = 199 Score = 138 bits (349), Expect = 7e-32, Method: Composition-based stats. Identities = 34/181 (18%), Positives = 75/181 (41%), Gaps = 18/181 (9%) Query: 26 YIWSPHDAYFYKGLSELI----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSEFI 75 + GL L+ D R+ Y ++ + +++S + +S + Sbjct: 4 LLLVDDHKIVRSGLKTLLSDLNFDQIDEADSGRVAYSLAQENSYSLIIMDISMEGMSG-L 62 Query: 76 NRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELV-YVINGR 134 + ++ ++ + +++++++ S+ L G V D + V +++NG Sbjct: 63 DALSKIINRLPKQKILILSMHDSD-LVIEKAKKLGAMGFVTKSDISDNLFQAVEHILNGG 121 Query: 135 FLRKDIK-----KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS 189 + K +++ +RE EI +M A G K+IA N S KTV ++ + + KL Sbjct: 122 NFFPETKASYNQLNQLNEREFEIFKMIASGKSIKNIAADMNISQKTVANYQTSIKQKLEI 181 Query: 190 K 190 Sbjct: 182 D 182 >UniRef50_B6WQV4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQV4_9DELT Length = 222 Score = 138 bits (349), Expect = 9e-32, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 63/212 (29%), Gaps = 39/212 (18%) Query: 22 RSDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDS 70 + + +G+ L+ + + D V +++S Sbjct: 3 DVCRILLVDDHKLLMEGIRSLLAPHSHLRVAGMAPDGKEAVGLAATLSPDLVIMDISMPG 62 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 ++ + L ++++ + + I G V + + + Sbjct: 63 MNG-VEASRAILQIRPETRILIYTGHEDQRHLLE-LIQLGIMGHVCKSDPPSVLLQAIDA 120 Query: 131 I----------------------NGRFLRKDIKKD---KITDREMEIIRMTAQGMQPKSI 165 + N + L ++ RE EI R+ A G + I Sbjct: 121 VRQGEVFLSCADPGGCMAALMRQNRQRLSPAEGGPDIGMLSPREKEIFRLLADGYSVRQI 180 Query: 166 ARIENCSVKTVYTHRRNAEAKLYS-KIYKLVQ 196 N S KTV TH+ + KL + I +L + Sbjct: 181 GDALNISPKTVETHKYSVLTKLRASSINELTK 212 >UniRef50_A1WBJ7 Two component transcriptional regulator, LuxR family n=30 Tax=root RepID=A1WBJ7_ACISJ Length = 239 Score = 138 bits (349), Expect = 9e-32, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 61/197 (30%), Gaps = 30/197 (15%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 K A GL + + + R + D + ++LS S Sbjct: 31 IKIGIVDDHAIVRAGLRQFLSEHVDLRVVGEASNGREAIDLVRVHEIDVLVMDLSMPGQS 90 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV-- 130 ++ + +++++ E A G + E + Sbjct: 91 G-LDALAMLRAKAPDMGILILSGYPEEHYAIN-LIRQGASGYLNKECEPKEIVEAIRTIA 148 Query: 131 INGRFLRKDIK---------------KDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 + R+L + +++++RE ++ A+G IA+ + SVKT Sbjct: 149 LGRRYLTPSVADLLAQQLNRKDDAPPHEQLSEREFQVFLKLAKGETAGDIAKSLSLSVKT 208 Query: 176 VYTHRRNAEAKLYSKIY 192 V T+R K+ Sbjct: 209 VSTYRTRLMEKMGLSSN 225 >UniRef50_C5SGD8 Two component transcriptional regulator, LuxR family n=2 Tax=Caulobacteraceae RepID=C5SGD8_9CAUL Length = 218 Score = 138 bits (349), Expect = 9e-32, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 29/196 (14%) Query: 22 RSDKYIWSPHDAYFYKGLSELI----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + + A +GL ++ E + D V +++ Sbjct: 4 DPLRILIVDDHALAREGLKAVLTSSGFSVVGEAADGPAAIALTEALCPDVVLMDVRLKGD 63 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS-RDIRKELVYV 130 + + + +V+++ A + G V + D++ +V V Sbjct: 64 MDGLEATRRIAALGLAARVLMLTLHDLPAYVRE-ALAAGAAGYVLKDTAIDDLQAAIVRV 122 Query: 131 INGRFLRK-----------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 G+ +T RE EI+ + A+GM K I R S Sbjct: 123 AQGQTALPLDLVSAAMRAPEPVERDPTALSSLTGREREIVHLIAEGMTNKEIGRSLGISP 182 Query: 174 KTVYTHRRNAEAKLYS 189 TV H AKL Sbjct: 183 ATVKAHVERLIAKLGV 198 >UniRef50_Q2YB36 Two component transcriptional regulator, LuxR family n=3 Tax=Betaproteobacteria RepID=Q2YB36_NITMU Length = 217 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 70/204 (34%), Gaps = 34/204 (16%) Query: 25 KYIWSPHDAYFYKGLSELIV------------DIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + A G++ LI D D + D V +++S +LS Sbjct: 7 QVMLVDDHAMLRHGMAMLINLEPDMEVFAEAGDGDEALATLKAGHHADIVLMDVSLKTLS 66 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--- 129 F + + V++++ A + RG V ++ ++ Sbjct: 67 GF-EVIKSIHTLLPALPVLVVSMHDEGVYAER-ALRAGARGYVMKQEPGEVLVTAIHEVL 124 Query: 130 ----------------VINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 + G + + +T E E++ + G + IA++ + S+ Sbjct: 125 KGNIYLSKPMHAKLLNRVAGGNSEPEPLINSLTPSEFEVLHLIGSGHSSQEIAKLLSRSI 184 Query: 174 KTVYTHRRNAEAKLYSK-IYKLVQ 196 KT+ THR N KL K L++ Sbjct: 185 KTIETHRFNIRTKLNLKDGADLIR 208 >UniRef50_A8ZMB6 Two-component transcriptional regulator, LuxR family n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZMB6_ACAM1 Length = 215 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 66/201 (32%), Gaps = 35/201 (17%) Query: 23 SDKYIWSPHDAYFYKGL-----------SELIVDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + + + +G+ + + ++ + + +++ L Sbjct: 2 AIQILLVDDQYLIREGIASLLELEEDLEVAGMAANGKEAIKQAIDLKPNIILMDIRMPEL 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + + + ++ Q++++ E L + G + + D + + + Sbjct: 62 NG-VEATAKIKQSLPHCQIIMLTTFDDEELIVQSLL-AGACGYLMKDIPPDDLGQAIKLA 119 Query: 132 NGR--FLRKDIKK--------------------DKITDREMEIIRMTAQGMQPKSIARIE 169 + L ++ +T RE+E++++ A+G K IA+ Sbjct: 120 DAGVFQLAPEVAGKLIGSLKTQRAGDAPKLPTDTPLTTRELEVLKLLAKGNTNKEIAKAF 179 Query: 170 NCSVKTVYTHRRNAEAKLYSK 190 N S TV H N +L + Sbjct: 180 NLSEGTVKNHVSNILMRLGLR 200 >UniRef50_C5V5K1 Two component transcriptional regulator, LuxR family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V5K1_9PROT Length = 211 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 31/201 (15%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + I + GL +L + L+ + D V ++L + Sbjct: 4 RLIVTDDHELVRAGLLQLFEGAPGIEVVGEAVNGEELMRKLQATQVDLVLLDLDMPGENG 63 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--VI 131 N +++++A + + + G + S E ++ V Sbjct: 64 A-NLIERIRRHYPDLLILILSAHDEIKVVSR-AVQAGASGYICKDCSPKTLLEAIHKVVA 121 Query: 132 NGRFLRKDIKKDK---------------ITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 G++L + ++ ++ RE EI R+ +G+ I+R S +TV Sbjct: 122 TGKYLSPLMAEELAYTSAIPQANNSLALLSSREQEIFRLLVEGLSNDDISRQLFISDRTV 181 Query: 177 YTHRRNAEAKLYSK-IYKLVQ 196 H+ N KL K + +LV Sbjct: 182 SAHKINLLNKLGLKNVVELVH 202 >UniRef50_B4DA09 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DA09_9BACT Length = 249 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 72/210 (34%), Gaps = 35/210 (16%) Query: 19 CQNRSDKYIWSPHDAYFYKGLSELIV-DIDRLIYLSLEK----------IRKDFVFINLS 67 ++R K + GL++ I + D + + E D ++LS Sbjct: 13 PESRPWKVLLVDDHPVVRDGLAQRIALEPDLSVCAACESVSRALREVTVHHPDLAVVDLS 72 Query: 68 TDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKEL 127 S ++ E + ++++ + + S +G V S D Sbjct: 73 LPSGHG-LDLIKEIHARYPEVRLLVFSMHDEQTY-GERALLSGAQGYVMKDESPDEVLAA 130 Query: 128 VYVINGRFLRKDI---------------------KKDKITDREMEIIRMTAQGMQPKSIA 166 + + + D++++RE+E++ QG K+IA Sbjct: 131 IRKVLSGRISISAHLSARLAEAAASTRGTRARKLPMDRLSNRELEVLEWMGQGKSVKAIA 190 Query: 167 RIENCSVKTVYTHRRNAEAKLYS-KIYKLV 195 + S KT+ T+R+ + KL +L+ Sbjct: 191 QRLERSAKTIETYRQRLKEKLNIESNSELI 220 >UniRef50_C6WIC9 Two component transcriptional regulator, LuxR family n=31 Tax=Actinobacteria (class) RepID=C6WIC9_ACTMD Length = 302 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 62/202 (30%), Gaps = 34/202 (16%) Query: 26 YIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSEF 74 + + A L+ + ++R D V +++ ++ Sbjct: 73 VVIADDQALLRGSFEVLVGSAPDLRVLGTAEDGERAVAVAARVRPDVVLMDVRMPNVDG- 131 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGR 134 I +A G +V+++ + Y + G + + V+ Sbjct: 132 IEATARICAAQAGVRVLILTTFDLDEYV-YAALRAGASGFLLKDTPPADLLAAIRVVASG 190 Query: 135 --------------------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 R D +T RE E++R+ A+G+ I + S Sbjct: 191 EALLSPSVTRRLITEFAARPAARPLPALDAVTAREREVLRLVAEGLSNTEITEALHVSRG 250 Query: 175 TVYTHRRNAEAKLYSK-IYKLV 195 T+ TH KL ++ +LV Sbjct: 251 TLKTHVGRLLHKLGARDRAQLV 272 >UniRef50_B2J8J5 Two component transcriptional regulator, LuxR family n=3 Tax=Cyanobacteria RepID=B2J8J5_NOSP7 Length = 211 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 69/195 (35%), Gaps = 23/195 (11%) Query: 17 MECQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFIN 65 + Q+ + + + + L+ + R + + D ++ Sbjct: 2 IMSQSNVIRILLADDHPILGQALTMFLQCESDMTVIGHAGDGREALELFHQHQPDVALMD 61 Query: 66 LSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRK 125 L + + + K ++V++ + Y + +G + G + Sbjct: 62 LRMPKMEGA-DAIAAICAKFKHARIVVLTTFDGDEDI-YRGLRAGAKGYLLKGAEPNELL 119 Query: 126 ELVYVI--NGRFLRKDIKK--------DKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 + + + +++ I ++++DRE+E++R+ A+G + I+ + N + T Sbjct: 120 DAIRTVHKGQKYIPPTIAAKLAERMSSEELSDRELEVLRLIAKGKNNQQISNVLNIAEST 179 Query: 176 VYTHRRNAEAKLYSK 190 V H N KL Sbjct: 180 VRFHTNNIFGKLNVS 194 >UniRef50_B8ET67 Two component transcriptional regulator, LuxR family n=12 Tax=Proteobacteria RepID=B8ET67_METSB Length = 223 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 37/194 (19%), Positives = 65/194 (33%), Gaps = 29/194 (14%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSL 71 + + A +G L+ R Y ++++ D V ++L+ L Sbjct: 4 AATILLVDDHAIVREGYRALLQQQPRLKVVAEAGDGAEAYRLFKQVKPDLVIMDLTMPGL 63 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKE-LVYV 130 + ++++ ++ A A + +G V + V Sbjct: 64 GG-VEAVKRIRQWDPAARILVFTMHQNAAFAVQ-AIRAGAKGYVTKSSPPEALIRGAFDV 121 Query: 131 INGR-FLRKDI--------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 + GR L DI D +T RE EI+R+ ++IA I S KT Sbjct: 122 LQGRIALSADIDHELALSRVTETPTATDVLTPREFEILRLLLAEKSTEAIAAILGLSPKT 181 Query: 176 VYTHRRNAEAKLYS 189 V R +AKL Sbjct: 182 VANTRYLIKAKLGV 195 >UniRef50_B8IGH6 Two component transcriptional regulator, LuxR family n=2 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IGH6_METNO Length = 232 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 36/210 (17%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 N + + + +G+ L+ ++ D ++++ Sbjct: 6 NSCTRVLVADAHPLLLRGVQHLLRHEPDLSIIGEAISGAQALRLASDLQPDIAILDVALP 65 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 L G +V++++ E + + + G V + + + Sbjct: 66 GLHGS-EIRQRLAERAAGTRVIILSG-TEEPICAQRALAAGVCGYVLKRSAPETLLHAIR 123 Query: 130 VI--NGRFLRKDIKKD--------------------KITDREMEIIRMTAQGMQPKSIAR 167 + G +L I +T+RE E+IR+ A G K IA Sbjct: 124 AVRTGGLYLDPTIAGQLVPAGGPPATRTSGIDGFSASLTNREREVIRLIALGFTNKEIAG 183 Query: 168 IENCSVKTVYTHRRNAEAKLYSKI-YKLVQ 196 + K++ T+R A KL + K+VQ Sbjct: 184 KLGITAKSIETYRTRASEKLDIRTRAKIVQ 213 >UniRef50_Q09C30 Two-component system regulatory protein n=3 Tax=Proteobacteria RepID=Q09C30_STIAU Length = 213 Score = 138 bits (347), Expect = 1e-31, Method: Composition-based stats. Identities = 30/197 (15%), Positives = 70/197 (35%), Gaps = 34/197 (17%) Query: 26 YIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSEF 74 + A +G+ L+ + ++ D V +++ ++ Sbjct: 4 IVLVDDHALIREGIRSLLEFTPDLHVVGEASDGEEAVKRVRELSPDVVLMDVRMPRMTG- 62 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY-VING 133 + ++VVL+ +++ + ++G + ++RD + + V NG Sbjct: 63 LEALRAMRREAPERRVVLLTTFDEDSVVVE-ALRAGVKGFLLKDVTRDQLADAIRRVANG 121 Query: 134 RFLRKDIKKDK--------------------ITDREMEIIRMTAQGMQPKSIARIENCSV 173 L ++ +T RE+E++R+ A+G+ + IA + + Sbjct: 122 ETLLPPGVAERVQRGFTEVPQEFPHAELPEGLTRRELEVMRLIARGLSNREIATVLGTAE 181 Query: 174 KTVYTHRRNAEAKLYSK 190 TV N AKL + Sbjct: 182 GTVKNQTSNILAKLGVR 198 >UniRef50_A4J6C2 Two component transcriptional regulator, LuxR family n=2 Tax=Clostridia RepID=A4J6C2_DESRM Length = 218 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 66/201 (32%), Gaps = 34/201 (16%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 N S K + + +GL +++ V + K D V ++++ Sbjct: 2 NTSIKLLIADDHILIREGLRKILSIEPHISVVGEVTNGQQAVDYCLKNPVDIVLMDINMP 61 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKE-LV 128 ++ I + ++ + + + I G V + D + ++ Sbjct: 62 IMNG-IEACRQIKKLNPNIGIIALTIHDQDEYL-FELIKYGISGYVLKDIHPDQLIKTIL 119 Query: 129 YVINGRFLRK--------------------DIKKDKITDREMEIIRMTAQGMQPKSIARI 168 V G + K +T+RE+E+++ A+G K+IA Sbjct: 120 GVAQGESFIPPSLTARVLAEFTRLSSGDYSEKKHLNLTEREIEVLKQVAKGQSNKAIANA 179 Query: 169 ENCSVKTVYTHRRNAEAKLYS 189 S KTV H N K+ Sbjct: 180 LYISEKTVKNHLTNIFQKIGV 200 >UniRef50_C7Q6M6 Two component transcriptional regulator, LuxR family n=89 Tax=Bacteria RepID=C7Q6M6_CATAD Length = 225 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 62/197 (31%), Gaps = 32/197 (16%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDIDRLIYL-----------SLEKIRKDFVFINLSTDSL 71 + + + +GL + + + ++ D + ++L + Sbjct: 7 VIRVLIADDHRMVRQGLRTFLELQEGIEVAGEAADGAECAERAAELEPDVILLDLVMPGV 66 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + A +V+++ + + + RG VY + V + Sbjct: 67 DG-VGAMELLREAGSTARVLVVTSFTDRRMI-IPAIRAGARGYVYKDVDPAALAAAVRSV 124 Query: 132 NGRFL-------------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCS 172 + + + + +T RE E++ + AQG + IAR + Sbjct: 125 HAGHVLLEPEVATALLDSGSNGAADQGPQAPALTAREREVLVLIAQGRANREIARALVLA 184 Query: 173 VKTVYTHRRNAEAKLYS 189 KTV TH N KL Sbjct: 185 EKTVKTHVSNILMKLGV 201 >UniRef50_Q39TN7 Two component transcriptional regulator, LuxR family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TN7_GEOMG Length = 210 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 78/203 (38%), Gaps = 31/203 (15%) Query: 23 SDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSL 71 S + + + A F +GL ++I + + ++ D V ++++ Sbjct: 2 STRILVADDHAIFREGLKQVIGTTVDMSVVDEAVDGKELLNKIQANDYDMVILDITMPGR 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY-- 129 + ++ E S V++++ E A Y S G + G + + + ++ Sbjct: 62 NG-LDVLTEMKSIKPKLPVLVMSMHPEEQYALR-AYKSGAAGYLNKGSASNELLDALHKI 119 Query: 130 VINGRFLRKDIK---------------KDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 + +++ + +++RE +++ M A G IA + SVK Sbjct: 120 SMGKKYVSSALAESLVSGLSDHNQQDLLQSLSNREYQVMSMIASGKTVGKIATELSLSVK 179 Query: 175 TVYTHRRNAEAKLYSK-IYKLVQ 196 TV T+R + KL K +L + Sbjct: 180 TVSTYRAHILRKLNMKNNAELTR 202 >UniRef50_A9FM25 DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FM25_SORC5 Length = 233 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 70/225 (31%), Gaps = 34/225 (15%) Query: 3 WQSDYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDR-----------LIY 51 W +S V ++ Y+ +G + + D Sbjct: 2 WSEGHSNPPVVIMAETPASKLHIYLI-DDHPVVREGFARALSDEPDMVVVGQAGTAADAL 60 Query: 52 LSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNI 111 + D V ++L+ I + + ++++++ E + Sbjct: 61 RETASCKPDVVLVDLNIPDRDG-IELLGALRAQLPQAKLLVLSGYDDE-FRVAEALRAGA 118 Query: 112 RGVVYAGLSRDIRKELVYVI--NGRFLRKDIKK-----------------DKITDREMEI 152 +G + + E + I G L I D +T RE ++ Sbjct: 119 QGYLVKTSKLEEVIEGIRRIATGGAPLSSSIAGAVVRAMRKPASEGSGGLDALTPRERQV 178 Query: 153 IRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYSKIY-KLVQ 196 +R+ A G+ + A S KTV THR AKL K +L + Sbjct: 179 LRLLAAGVSTRETAARLTISPKTVETHRVRIYAKLGCKSAVELTR 223 >UniRef50_B4CYJ9 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYJ9_9BACT Length = 219 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 75/211 (35%), Gaps = 34/211 (16%) Query: 17 MECQNRSDKYIWSPHDAYFYKGLSELIV-----------DIDRLIYLSLEKIRKDFVFIN 65 M + + + F +GL++LI D + I ++EK D + ++ Sbjct: 1 MNDTPQKARVLIVEDHEIFREGLAQLINRQPDFMVCGECDDPKGIAAAIEKAEPDVLLLD 60 Query: 66 LSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAG-LSRDIR 124 L I+ + + ++++++ A + G V S + Sbjct: 61 LMLHGAGG-IDLIKQLHTLFPKVRILVLSMHDETVFAPR-ALRAGALGYVMKQEASGQVL 118 Query: 125 KELVYVINGR-------------------FLRKDIKKDKITDREMEIIRMTAQGMQPKSI 165 L V+ G L K++DRE+ + + G+ + I Sbjct: 119 AALRAVVVGELHVSRKVGITLMQRAIKMPELSAADGVAKLSDRELHVFELIGAGIPTREI 178 Query: 166 ARIENCSVKTVYTHRRNAEAKLYSKI-YKLV 195 A S+KTV THR N + KL + +LV Sbjct: 179 ATRLGISIKTVETHRENIKHKLELQSGTELV 209 >UniRef50_C4KAM8 Two component transcriptional regulator, LuxR family n=4 Tax=Proteobacteria RepID=C4KAM8_THASP Length = 217 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 61/196 (31%), Gaps = 28/196 (14%) Query: 23 SDKYIWSPHDAYFYKGLSELI----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + + A G L+ D + ++ D + +++S + Sbjct: 9 ALRILLADDHAVVRMGFRLLLEGAGAEVVGEADCGEAAVQAFGQLHPDVLLMDVSMPGIG 68 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + L+ +V++++A + + G + D V + Sbjct: 69 G-LGALERVLAHHPAARVLMLSAHDDAQIPAR-ALRAGAGGYLSKRAHPDELLHAVATVA 126 Query: 132 -NGRFLRKDI--------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 R++ I +T++E + A+G IA + S TV Sbjct: 127 RGQRYIDPAIAPALALAQFAGGGDPVAALTEKEFAVFLQLARGRSVAEIAETHSLSPSTV 186 Query: 177 YTHRRNAEAKLYSKIY 192 TH + + KL Sbjct: 187 GTHLYHIKQKLEVSNA 202 >UniRef50_A9B5L0 Two component transcriptional regulator, LuxR family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5L0_HERA2 Length = 207 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 67/192 (34%), Gaps = 27/192 (14%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + GL ++ + +E+ + D V ++L LS Sbjct: 2 IRVLVVDDHPVVRHGLMAMLGWEQDFEPVGDAADGQQAVNLIEQQQPDVVLLDLRLPQLS 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 I ++ + +++ ++ N+ G + S + + I Sbjct: 62 G-IEVMRHTRASAPNTRFLVLTTYDTDEYIG-PALNAGAAGYLLKDASPEEVFRAIRSIY 119 Query: 133 GR--------------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 L + +D+++ RE++++++ +G K+IA N S T+ + Sbjct: 120 EGGAALQSGIAARVLKRLATEPAEDELSQRELDVLQLLVRGESNKAIALSLNISENTIKS 179 Query: 179 HRRNAEAKLYSK 190 H + +KL + Sbjct: 180 HVSHIFSKLDVR 191 >UniRef50_C7PEC4 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEC4_CHIPD Length = 207 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 32/196 (16%), Positives = 72/196 (36%), Gaps = 27/196 (13%) Query: 26 YIWSPHDAYFYKGLS-----------ELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSEF 74 I + F G+ + I +++ L++ + D +++S L+ Sbjct: 7 IILADDHTLFADGIRSLLEQTPYITVQGIASNGQVLIEMLQRHQPDLAILDISMPVLNG- 65 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSR-DIRKELVYVING 133 + + + +++++ L + + G + ++ D+ + + V+ G Sbjct: 66 LEVTKIIRKDMPHIRTIILSSYSDPHLIS-LSRSYGADGYLMKTCNQYDLLQTITRVVRG 124 Query: 134 RFLRK------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRR 181 ++ +T RE+EI+ + Q + IA S+ TV THR+ Sbjct: 125 ESCFPQLPRIQEAEIDHSFREFNLTRRELEILHLINQQFTNQQIATHLYLSIYTVETHRK 184 Query: 182 NAEAKLYSKI-YKLVQ 196 N KL K L + Sbjct: 185 NIMQKLQLKSPAALTR 200 >UniRef50_B1Y743 Two component transcriptional regulator, LuxR family n=6 Tax=Bacteria RepID=B1Y743_LEPCP Length = 211 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 67/201 (33%), Gaps = 31/201 (15%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + + +GL +L+ + + D ++ Sbjct: 4 RVFIADDHPVVRQGLKQLLGAEADFSVAGEASSGHEVIDQCGRFAWDVAVLDYRMPG-KG 62 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI-- 131 I+ E + V++++ + A + G + + + + + Sbjct: 63 GIDLIKELRQRFPDRPVLVLSVCPEDQYAMR-VLRAGAAGYLTKESAPEDLVNAIRKVAR 121 Query: 132 NGRFLRKDIKKD---------------KITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 GRF+ + + +++DRE +I+ + A G + IA+ S T+ Sbjct: 122 GGRFVSAALGEQLALSLSTGGDEPLHCRLSDREYQIMWLLASGKKVGEIAQQLFLSPNTI 181 Query: 177 YTHRRNAEAKLYSKI-YKLVQ 196 T+R+ KL K +L++ Sbjct: 182 STYRKRILEKLDLKSNAELMR 202 >UniRef50_Q15T22 Two component transcriptional regulator, LuxR family n=4 Tax=Alteromonadales RepID=Q15T22_PSEA6 Length = 214 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 30/196 (15%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 K + G+ ++ D K D V +++S + Sbjct: 2 IKILLVDDHELVRTGIRRILEDVQGFVVVGEATTGEEAVKFCRKNAPDLVLMDMSMPGIG 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--V 130 + + L + +V++++ K + G + + + Sbjct: 62 G-LEATKQILRFSENTRVIVLSVHKENPIPAK-VMRMGAFGYLTKDSDPKEMELAIRKVA 119 Query: 131 INGRFLRKDIKK---------------DKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 +++ DI + + +++RE+EI M +G + IA+ N S KT Sbjct: 120 AGQKYVSPDIAQQIAIGALDFSDGNPFESLSERELEITLMLTKGSKVPDIAKFLNISAKT 179 Query: 176 VYTHRRNAEAKLYSKI 191 V THR KL Sbjct: 180 VNTHRYRMFEKLNVST 195 >UniRef50_B3RA82 Response regulator protein; Response regulator receiver domain, HTH LuxR domain; higly similar to B. subtilis Transcriptional regulatory protein degU (Protease production enhancer protein) n=1 Tax=Cupriavidus taiwanensis RepID=B3RA82_CUPTR Length = 223 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 55/190 (28%), Gaps = 27/190 (14%) Query: 25 KYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSLSE 73 + + + G+ + + + D V ++ + Sbjct: 6 RVLLVDDHPFVLDGVRLRLEATGEMTVIGQAASVEEAIVLAGRHAPDLVVSDIHMPDANG 65 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI-- 131 + + +V+ ++ K + + V + + Sbjct: 66 -LQLAARFAEQFPSVRVIALSMHKDPEYVRR-AFALGVAAYVLKEAPAHELVTAIRTVAA 123 Query: 132 NGRFL------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTH 179 G +L + +T +E ++++ A+G K IA SV+TV TH Sbjct: 124 GGTYLNAELQAFLHTDEPPPSSRRALTPKEATVLKLLAEGRSNKEIAERLGTSVRTVETH 183 Query: 180 RRNAEAKLYS 189 R + KL Sbjct: 184 RLHLRRKLRV 193 >UniRef50_Q5NY27 DNA-binding response regulator, LuxR family n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NY27_AZOSE Length = 215 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 69/203 (33%), Gaps = 32/203 (15%) Query: 24 DKYIWSPHDAYFYKGLSELIVD----------IDRLIYLSLEKIRK-DFVFINLSTDSLS 72 + + + F L ++ + + L + D +++ ++ Sbjct: 3 IRIVLADDHQMFRHALRAMLEKEPGIRIVGEASNGDELIDLISHQPVDIACVDIGMPGMN 62 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 I L+ +V+ ++A N+ G V + + ++ + Sbjct: 63 G-IEATRRLLAIRPHVRVIGLSAFSDRQFVLD-LLNAGATGYVTKAEAGEELLRAIHTVQ 120 Query: 132 -NGRFLRKDIKK----------------DKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 + +L D+ +IT RE +++++ A+G IA + + Sbjct: 121 QSKTYLCPDVAATVTNALLDNAPKDISAPRITARERQVLQLIAEGYTSTRIADRLHLAPS 180 Query: 175 TVYTHRRNAEAKLY-SKIYKLVQ 196 TV HRRN KL + +L + Sbjct: 181 TVEVHRRNIMRKLDLHSVAELTK 203 >UniRef50_B1ZN14 Two component transcriptional regulator, LuxR family n=3 Tax=Verrucomicrobia RepID=B1ZN14_OPITP Length = 215 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 68/201 (33%), Gaps = 31/201 (15%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + + + L E++ + +++ D + ++ L+ Sbjct: 3 RLVIVEDQTAIREMLVEILRLDANYQLVGESGDGQSALALCLEVKPDLLVLDAKLPGLNG 62 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI-- 131 ++ + G +V++ + ++ L + G V K+ + + Sbjct: 63 -VDLLRRISKKLSGMRVLVFSGHENPVLIREM-LEAGAHGFVEKTAGLFEFKKGLETVAS 120 Query: 132 NGRFLRKDIKK---------------DKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 G + + D +TDRE EI+++ A+ K IA S+KTV Sbjct: 121 GGTYFGPAVAALLRNVVANPSASNTADFLTDREREILQLVAESHSTKEIAAKLGISIKTV 180 Query: 177 YTHRRNAEAKLY-SKIYKLVQ 196 HR N KL + L + Sbjct: 181 DNHRTNLMRKLNLHDVASLTR 201 >UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1R6_THERP Length = 221 Score = 136 bits (344), Expect = 3e-31, Method: Composition-based stats. Identities = 31/209 (14%), Positives = 62/209 (29%), Gaps = 36/209 (17%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTD 69 + + + GL L+ ++ D +++S Sbjct: 3 TNKIRVLLADDHPIVRVGLRALLEAEPDIAVVGEAGTADEAVELARTLQPDVAVLDISMP 62 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 + S + +++ E + G V E + Sbjct: 63 G--NGLEALRRIASLGLPTRTLILTVHAEERYL-LPVLQAGGSGYVRKSSLHTDLVEAIR 119 Query: 130 VINGRFLRKDIKKDK---------------------ITDREMEIIRMTAQGMQPKSIARI 168 ++ + D + +++RE E++R+TA G + IA Sbjct: 120 LVARGEVFIDQAAARTLLQGYLDHARTGEVQDPAQLLSEREREVLRLTAAGYTAQEIADQ 179 Query: 169 ENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 S KTV T+R KL S+ +LV+ Sbjct: 180 LFLSPKTVETYRHRVMQKLGFSRRSELVR 208 >UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP n=13 Tax=Gammaproteobacteria RepID=C5B7B5_EDWI9 Length = 215 Score = 136 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 67/195 (34%), Gaps = 27/195 (13%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 + + +G+ +L+ + + D + ++L+ Sbjct: 8 TAPFRVMIVDDHPLMRRGVRQLLELDSVFSVVAEASNGSEAIALAGRSQPDLILLDLNMK 67 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRD-IRKELV 128 LS ++ S +++++ + + Y ++ + + + ++ Sbjct: 68 GLSG-LDTLKALRSEGIDARIIILTVSDARSDV-YALVDAGADSYLLKDSEPEALLAQIR 125 Query: 129 YVINGRFLRKDI-------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 GR + + +T+RE+++++ +GM K IA + S +T Sbjct: 126 QAAEGRSVFSESVSAYLSTRSEIADPLADLTERELDVLQEVVRGMSNKQIAAQLHISEET 185 Query: 176 VYTHRRNAEAKLYSK 190 V H RN KL + Sbjct: 186 VKVHIRNLLRKLNVR 200 >UniRef50_B7AAT6 Two component transcriptional regulator, LuxR family n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7AAT6_THEAQ Length = 207 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 34/200 (17%), Positives = 72/200 (36%), Gaps = 29/200 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIVDID-----------RLIYLSLEKIRKDFVFINLSTDSLS 72 + + GL L+ R LEK++ D +++S + Sbjct: 2 IRVVLVEDHLLVRSGLRHLLEARGPVRVVGEAGSCREALELLEKVQADVAILDVSLPDGT 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL-SRDIRKELVYVI 131 I +++ ++ + + + +G V +++ ++ V Sbjct: 62 G-IALCQRLRERFPELRLLALSMHEDLEYV-RGFLQAGGQGYVSKAAVDQELLDAVLAVA 119 Query: 132 NG-RFLRK-------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 G R+L ++ ++ RE E++R+ AQG+ K +A S KTV Sbjct: 120 RGERYLNPALAMRLAMELVRESAEEAPLSPREEEVLRLLAQGLSHKEVAEKLGISEKTVA 179 Query: 178 THRRNAEAKLY-SKIYKLVQ 196 T+R KL + +L++ Sbjct: 180 TYRERGMEKLGLASRSELLR 199 >UniRef50_A1VB77 Two component transcriptional regulator, LuxR family n=5 Tax=Desulfovibrio RepID=A1VB77_DESVV Length = 216 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 76/205 (37%), Gaps = 34/205 (16%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSL 71 + +G+ L+ +EK D V ++L+ + Sbjct: 2 PITVVIVEDLDIVREGIKALLDANGEFIIVGEASDGIEALRIVEKHAPDIVLMDLTLPVM 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 E + +V+ + A K ++L Y ++ G + SRDI + + + Sbjct: 62 EGA-EAIREIKRRRETTKVLALTAHKKDSLI-YRTLSAGADGYLLKNASRDILFQAMQTV 119 Query: 132 --NGRFLRKDIK------------------KDKITDREMEIIRMTAQGMQPKSIARIENC 171 R++ +I D ++DRE +++++ A+G K++A Sbjct: 120 LAGRRYISPEISDLLIDDFLRHGRRDEASMLDLLSDREKQVLKLVAEGHGNKAVAEKLCI 179 Query: 172 SVKTVYTHRRNAEAKLY-SKIYKLV 195 S KTV H+ N + KL + +LV Sbjct: 180 SHKTVEKHKANLKRKLGTASTAELV 204 >UniRef50_UPI0001B502C9 two component LuxR family transcriptional regulator n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B502C9 Length = 229 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 64/192 (33%), Gaps = 27/192 (14%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + + + + A +GL ++ R ++ D V ++L + Sbjct: 2 ALRVLIADDHAVVRQGLRMILGLDNEIKVVGETTNGREAVRLARELCPDVVLMDLLMPVM 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 ++ E + +VV + + +A+ + G + D + V Sbjct: 62 DG-VSATAEIRQDIPEVEVVALTSSLDDAMVM-GAVRAGAIGFLLKNAEADDLRNAVKAA 119 Query: 132 NGRFLRKDIKK--------------DKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 + +++T+RE E++ M A+G K IAR +TV Sbjct: 120 AAGQIHVSPAAISRLMGQVREPSGPEQLTERETEVLTMLARGKANKEIARDLRIGQQTVK 179 Query: 178 THRRNAEAKLYS 189 T+ + KL Sbjct: 180 TYVSHILTKLGV 191 >UniRef50_A1ZYF0 DNA-binding response regulator, LuxR family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZYF0_9SPHI Length = 218 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 60/200 (30%), Gaps = 36/200 (18%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 K + F KGL ++ D + + ++ D + ++L + Sbjct: 4 KVAIADDHVLFRKGLVTILELDDNIEVVYGADNGKELIDKVDAQPPDVILMDLKMPVMDG 63 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING 133 + + +V++++ E + G + D + + Sbjct: 64 -MEATKIIKAKYPEVKVLVLSMYDEEKFIIHC-LELGANGYLLKNTDPDELVHAIGTVMA 121 Query: 134 RFL-----------------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIEN 170 + + ++T RE E++ + + + +A Sbjct: 122 KDFYFNNHISTVMLKGLNQKKRAKGKPQFENSIELTKREQEVLELICKELTTPEMAEKLF 181 Query: 171 CSVKTVYTHRRNAEAKLYSK 190 S +TV HR+N K +K Sbjct: 182 ISNRTVEGHRKNLLEKTGAK 201 >UniRef50_B4D831 Two component transcriptional regulator, LuxR family n=2 Tax=Verrucomicrobia RepID=B4D831_9BACT Length = 209 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 23/189 (12%) Query: 22 RSDKYIWSPHDAYFYKGLSELIV-----------DIDRLIYLSLEKIRKDFVFINLSTDS 70 R + + A GL E I K + D V ++ Sbjct: 3 RKIRVLIVDDHAMMRLGLVEAIAGERDLTLVGEAANGTQCLEQYRKHQPDVVTMDFRLPG 62 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 + +VV+++ + E + + G V + E + Sbjct: 63 ADGA-ESTAHLRTEFPDARVVVLSVFEGEEDI-WRAVEAGAMGYVSKSAEVEEVLEAIRC 120 Query: 131 INGRF----------LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 + G L +D +T RE +++ G+ K IA + S TV H Sbjct: 121 VVGGETYFPAPIASKLASRRTRDALTPREHQVLHHIVAGLSNKEIAAALHMSEATVKLHI 180 Query: 181 RNAEAKLYS 189 N AKL+ Sbjct: 181 SNTLAKLHV 189 >UniRef50_Q6ADI3 Two-component system, regulatory protein n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6ADI3_LEIXX Length = 207 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 27/191 (14%), Positives = 59/191 (30%), Gaps = 24/191 (12%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDRLIY-----------LSLEKIRKDFVFINLSTDSLS 72 + + G+ L+ + L L+ R D V ++L+ + Sbjct: 2 IRIVLVDDHPILRHGMRTLLDTQEDFEVVGDCGDPEEYRLLLKSARPDIVLMDLALGGDT 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + + + V++ S+A ++ G + + + Sbjct: 62 DGVALTAHTRATSPSTAVLVFTTYDSDADFVRS-LDAGASGYLLKDSTPVELFAAIRTAR 120 Query: 132 -NGRFLRKDIK----------KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 G L + ++ +T RE+E++ + A G + + S TV TH Sbjct: 121 DGGSALSPAVASRLMDRMRAPQESLTPREIEVLALLATGRTNRQVGERLFVSETTVKTHV 180 Query: 181 RNAEAKLYSKI 191 + KL Sbjct: 181 NHIFTKLGVDT 191 >UniRef50_C0DXM6 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXM6_EIKCO Length = 215 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 63/196 (32%), Gaps = 28/196 (14%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLSLEK-----------IRKDFVFINLSTD 69 + + + F +GLS L+ ++ R D V +++ Sbjct: 3 ESNIRILLVDDHPLFRRGLSFLLAQEYGFEIVAEATDGLEGVKLARFHRPDLVLLDVEMP 62 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 ++ + L G V+++ + RG + D E + Sbjct: 63 VMNGP-EALAQMLDFQPGLPVLMLTISEDADNLKKC-LELGARGYILKNADTDFLVEAIR 120 Query: 130 --VINGRFLRKDIK-------------KDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 V + + ++ D +T RE +++R A G+ K IAR S Sbjct: 121 QAVAGQQTVSPEMNNAGQSIPPEHSAILDSLTQRERDVLRYVAGGISNKMIARRMFLSEN 180 Query: 175 TVYTHRRNAEAKLYSK 190 TV H +N KL Sbjct: 181 TVKAHMQNIFRKLNID 196 >UniRef50_Q51373 Response regulator gacA n=50 Tax=Gammaproteobacteria RepID=GACA_PSEAE Length = 214 Score = 136 bits (343), Expect = 5e-31, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 66/193 (34%), Gaps = 31/193 (16%) Query: 24 DKYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTDSLS 72 K + G++ ++ DI +++ D V +++ + Sbjct: 2 IKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIG 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + + L + +VV++ + + + G + G + + + + Sbjct: 62 G-LEATRKLLRSQPDIKVVVVTVCEEDPFPTR-LMQAGAAGYMTKGAGLEEMVQAIRQVF 119 Query: 132 -NGRFLRK----------------DIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 R++ D D +++RE++I M A + +SI+ S K Sbjct: 120 AGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALMIANCHKVQSISDKLCLSPK 179 Query: 175 TVYTHRRNAEAKL 187 TV T+R KL Sbjct: 180 TVNTYRYRIFEKL 192 >UniRef50_Q89IF1 Two-component response regulator n=2 Tax=Bradyrhizobium RepID=Q89IF1_BRAJA Length = 217 Score = 136 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 30/201 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSLS 72 + +G ++ Y + + D V +++S S Sbjct: 9 ISVLLVDDHPIVRQGYRRVLESQGDLHVVAEADNAADAYGAFKAHDPDVVVLDISMPGAS 68 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + + ++++ L +++ G V + + Sbjct: 69 G-LEAIRNIRARSPRARILVFTMHNEAVLV-KAAFSAGASGFVTKSSEPSAVVNAIRSVA 126 Query: 132 -NGRFLRKDIK--------------KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 R + DI D++ +RE+EI+R A G + IA N SVKTV Sbjct: 127 RGERAMSDDIAHILADDSLSPTGSVLDQLGEREIEILRQFAGGATTEQIATHLNLSVKTV 186 Query: 177 YTHRRNAEAKLYSKI-YKLVQ 196 + + K ++ +LV+ Sbjct: 187 QNYHYLIKTKTGARTDAQLVR 207 >UniRef50_UPI0001746AEC response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746AEC Length = 222 Score = 136 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 34/204 (16%), Positives = 69/204 (33%), Gaps = 34/204 (16%) Query: 25 KYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSLSE 73 + + +G ++ LE++R D V +L+ S Sbjct: 11 RVLLVDDHRMVLEGYRFMLNAQPDLEVCATAVSAAEALGLLEQVRPDLVVTDLTLGGRSG 70 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS-RDIRKELVYVIN 132 ++ + ++ ++++ + AN + RG V + V+ Sbjct: 71 -LDLIKDVMALFPETKILVCSMHDEMLWANRT-LQAGARGYVMKDADGPTFLTAVRTVLA 128 Query: 133 GRFLRKDI-------------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 G+ +K++DRE E+ R+ +G K IA N S Sbjct: 129 GQRYMSSRLAASVLESFGQSKPRGSSSPIEKLSDREFEVFRLFGEGKTAKEIAAQLNLSP 188 Query: 174 KTVYTHRRNAEAKLYSKI-YKLVQ 196 KTV HR + + KL ++++ Sbjct: 189 KTVSVHRDHIKEKLGFSTSAEMIR 212 >UniRef50_C0QJ84 Two-component response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ84_DESAH Length = 218 Score = 136 bits (342), Expect = 5e-31, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 70/206 (33%), Gaps = 34/206 (16%) Query: 23 SDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSL 71 + + L + + + EK + V ++++ L Sbjct: 5 PITILLVDDHDILRQSLKKALEEKPNVKVLQGACNGLDAVRLTEKHCPNIVIMDINMPDL 64 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS-RDIRKELVYV 130 + I + +S +++ ++ E + +G + S D+ ++ V Sbjct: 65 NG-IEAAKQIISKNPDIKIIALSMLCDE-FNVKSMIQAGAKGFLLKTSSLEDLHTAILMV 122 Query: 131 INGR-FLRKDI------------------KKDKITDREMEIIRMTAQGMQPKSIARIENC 171 +G+ +L + ++T RE +I++ A+G + I+ N Sbjct: 123 ASGKSYLCPEALNIMMEDIQTPGDTKLLCPLQRLTLRERGVIQLIAEGYTSQEISEKLNI 182 Query: 172 SVKTVYTHRRNAEAKLY-SKIYKLVQ 196 S +TV HR N KL I L + Sbjct: 183 SKRTVDVHRTNTMNKLKIHTIAGLTR 208 >UniRef50_C9M8B3 DNA-binding response regulator, LuxR family n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M8B3_9BACT Length = 212 Score = 136 bits (342), Expect = 6e-31, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 60/189 (31%), Gaps = 24/189 (12%) Query: 23 SDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSL 71 + I + +GL + + +E+++ D +++ Sbjct: 3 KIRVILADDHPLTRQGLKAYLEREENVALVGEAADGDEAWKLIEELKPDVALLDIRMPGA 62 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 I +++ + S+ + +G V S + + + Sbjct: 63 DG-ITLARRIKENKLPVAAIMLTSYDSQQYV-LASLKAGAKGFVLKTTSAGALMKAIQTV 120 Query: 132 NGRFL-----------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 L ++ + ++ RE E++ A+G+ K +A S +TV TH Sbjct: 121 ATGSLFLDSEVASVVGAQEELTEALSPREREVLLCAARGLSSKEVAAQLYISERTVQTHL 180 Query: 181 RNAEAKLYS 189 + KL + Sbjct: 181 ASVYDKLGA 189 >UniRef50_A1WN26 Two component transcriptional regulator, LuxR family n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WN26_VEREI Length = 222 Score = 136 bits (342), Expect = 6e-31, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 63/197 (31%), Gaps = 29/197 (14%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTD 69 + + + A G + + Y +++ D V +++ Sbjct: 3 TETIRTLIVDDHAVVRSGYRSYLEQVPGFQVVAEADCANEAYAQYKRMHPDVVIMDIMLQ 62 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRD-IRKELV 128 S I+ LS G ++++ + S L N + G V D +R+ + Sbjct: 63 GASG-IDASRRILSNHPGAKILIFSMYVSPVLLQQ-ALNVGVLGAVGKQCDPDTLREAAI 120 Query: 129 YVING---------------RFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 V G R+ R D ++ RE EI + G K IA+ N S Sbjct: 121 AVAGGDRYLDASMAQSLVFSRYDRGQKIFDALSPREFEIFLLLISGAPVKEIAQALNLSA 180 Query: 174 KTVYTHRRNAEAKLYSK 190 KTV KL Sbjct: 181 KTVANRASMIRQKLGVS 197 >UniRef50_A1BJU3 Two component transcriptional regulator, LuxR family n=1 Tax=Chlorobium phaeobacteroides DSM 266 RepID=A1BJU3_CHLPD Length = 203 Score = 136 bits (342), Expect = 6e-31, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 71/191 (37%), Gaps = 24/191 (12%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSLS 72 I + F +GLS L+ D DR + K + ++LS Sbjct: 2 ITIIIADDHKIFRQGLSRLLADDDRFKLLGEASNGKEALNLIWKEKPQVAVLDLSMPRPD 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRD------IRKE 126 + + +A + +++ + S + G V + + ++ Sbjct: 62 G-LEVVSSIRAAHSNTRCIILTMKDDIETVRR-ALESGVYGYVLKEAAYEEIAEAIVKVA 119 Query: 127 LVYVINGRF-----LRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRR 181 + GRF L + ++T+RE+E++R +G+ + IA S +TV THR+ Sbjct: 120 DNKLYLGRFQDNPNLYASCCEGQLTNREVEVLRCVVRGLTSRQIASELFISHRTVETHRQ 179 Query: 182 NAEAKLYSKIY 192 + KL + Sbjct: 180 HIMEKLNIRTA 190 >UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LUT0_9FIRM Length = 216 Score = 136 bits (342), Expect = 6e-31, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 63/206 (30%), Gaps = 29/206 (14%) Query: 17 MECQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFIN 65 ME + + + + KGLS L+ K D ++ Sbjct: 1 MENKKEPLRILLADDHRVLRKGLSLLLSSEEDFSVVAEASDGEEALEKAAKTPVDIALLD 60 Query: 66 LSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRK 125 LS + + + +V+++ + G + Sbjct: 61 LSMPHMGG-LECLRRLKAMQPAVRVLILTMHSERQYVCEC-LRAGANGYLCKDTLDAELF 118 Query: 126 ELVYVI--NGRFLRKDIKK-------------DKITDREMEIIRMTAQGMQPKSIARIEN 170 + + GR+L + + ++ RE E++ + G +IA Sbjct: 119 RALRTVAAGGRYLGEREAELLIDGALEEPEEPAALSTREREVLELIVHGYSLSTIADKLY 178 Query: 171 CSVKTVYTHRRNAEAKLYS-KIYKLV 195 S+KTV T++ KL + +LV Sbjct: 179 LSIKTVSTYKTRLLQKLDCTQNSELV 204 >UniRef50_A8L345 Two component transcriptional regulator, LuxR family n=33 Tax=Bacteria RepID=A8L345_FRASN Length = 249 Score = 136 bits (342), Expect = 6e-31, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 59/200 (29%), Gaps = 34/200 (17%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + GL ++ R ++R D I++ + Sbjct: 23 IRVVVADDQEIVRTGLRMILDAQPGIVVVGVAVDGRRAVELARRLRPDVCLIDIRMPVMD 82 Query: 73 EFINRDNEWLSAVKG-KQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 V VV+I + Y + RG + D+ + V+ Sbjct: 83 GIQATLALAGPGVADPLAVVVITTFDLDEYV-YAALRAGARGFLLKDAGPDLLAQAVHAA 141 Query: 132 N---------------------GRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIEN 170 G + +TDRE +++ A G IA + Sbjct: 142 ACGDALIAPNVTARLLATFAGSGPAPVPAQPVEALTDREEQVLATVAGGRTNSEIAADLH 201 Query: 171 CSVKTVYTHRRNAEAKLYSK 190 S+ TV TH + AKL ++ Sbjct: 202 ISLSTVKTHIASLMAKLGAR 221 >UniRef50_A5WFD3 Two component transcriptional regulator, LuxR family n=3 Tax=Psychrobacter RepID=A5WFD3_PSYWF Length = 211 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 68/195 (34%), Gaps = 30/195 (15%) Query: 24 DKYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTDSLS 72 K + G+S ++ D ++ + D V ++++ ++ Sbjct: 2 IKVLVVDDHDLVRMGISRMLADDPEIEVIGEADSGEAAIRMVKALSPDVVLLDVNMPNIG 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + + +++ +++ S+ + + + G + G D + + + Sbjct: 62 G-VETTKRLRQFDEKVKILAVSSVSSQPYPS-MLLKAGVNGYITKGTPLDEMIKAIKKVY 119 Query: 132 -NGRFLRKDIKK---------------DKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 ++ D+ + D++++RE ++ M P+ IA SVKT Sbjct: 120 QGSKYFSSDVAEQLADMLLTDNEESPFDRLSEREKQVAMMVVNCQSPQQIADQLFVSVKT 179 Query: 176 VYTHRRNAEAKLYSK 190 V T+R K+ Sbjct: 180 VNTYRYRIFEKVGVD 194 >UniRef50_Q11YW8 Two component transcriptional regulator, LuxR family n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11YW8_CYTH3 Length = 215 Score = 135 bits (341), Expect = 6e-31, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 34/207 (16%) Query: 22 RSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDS 70 + I + G+ L+ + ++ + + V ++++ Sbjct: 3 KKISIIIADDHTLIRDGIKSLLQSVDEFEVVGEATDGDELIQFIDTLDPEIVVLDITMPK 62 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 S I E + ++++ + S + + + V Sbjct: 63 KSG-IEVITEVKKYNNRVKFIVLSMHDNPEYVLKSV-QSGALSYLLKNTDHEEIIKAVKA 120 Query: 131 I--NGRFLRKDIK------------------KDKITDREMEIIRMTAQGMQPKSIARIEN 170 + ++ DI + +T RE+E+++ + G+ K IA Sbjct: 121 VSAGQKYFSPDIYSIILNGLANPELVKASQIAETLTKRELEVLKEVSMGLSTKLIADKLF 180 Query: 171 CSVKTVYTHRRNAEAKLYS-KIYKLVQ 196 SV+TV THR N KL +L++ Sbjct: 181 ISVRTVETHRINLMKKLDVHNSAELIK 207 >UniRef50_B5EEC0 Two component transcriptional regulator, LuxR family n=2 Tax=Geobacter RepID=B5EEC0_GEOBB Length = 216 Score = 135 bits (341), Expect = 7e-31, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 31/201 (15%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDRLIYLSLE-----------KIRKDFVFINLSTDSLS 72 + I + F +G+ L+ + ++ ++ + D V ++LS ++ Sbjct: 3 IRIILADDHVMFREGMRALLEREEDMVVVAEAGDGVSVVEKTLENMPDVVVLDLSMPGMN 62 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 + V G +++++ ++ + + V + Sbjct: 63 GT-EAASVIHQKVPGIGIIILSMHSDRQYVIE-ALKLGVKSFILKEWAFQELVTAVRCVF 120 Query: 133 G--RFLRKDI---------------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 +L + K +T RE + R+ G K I S KT Sbjct: 121 KDTSYLSPRLSDIIISGLADEGKPLGKYSLTPREEQAYRLLVAGKNCKEIGYELKISSKT 180 Query: 176 VYTHRRNAEAKLYSK-IYKLV 195 V T+R KL I +LV Sbjct: 181 VETYRLKVMKKLNISNIAQLV 201 >UniRef50_C0N7Q7 Sigma-70, region 4 family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N7Q7_9GAMM Length = 226 Score = 135 bits (341), Expect = 7e-31, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 64/204 (31%), Gaps = 30/204 (14%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTD 69 + A +G L+ D Y +K + D V +++S Sbjct: 2 TNVITIMLVDDHAIVREGYRSLLQKQDNLEVIAEACDGTEAYSQYKKYQPDIVVMDISLP 61 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 S + ++++ + ++ + A + G + + + Sbjct: 62 GQSG-LKAIERIRQFDAKAKILVFSMHQNPSFALQ-ATRAGALGYITKSSDPEDLIRAIA 119 Query: 130 --VINGRFLRKDIKK--------------DKITDREMEIIRMTAQGMQPKSIARIENCSV 173 N L DI + D++T RE EI+R+ + IA + N S Sbjct: 120 EVAKNKHTLSADIAQALAMEKLGQEQSALDELTVREFEILRLLVDAKSNQDIAELLNISP 179 Query: 174 KTVYTHRRNAEAKLYSKIY-KLVQ 196 KTV + KL +L + Sbjct: 180 KTVSNSHYIIKKKLGVSSDIELTR 203 >UniRef50_B1ZPK5 Two component transcriptional regulator, LuxR family n=2 Tax=Verrucomicrobia RepID=B1ZPK5_OPITP Length = 196 Score = 135 bits (341), Expect = 7e-31, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 68/194 (35%), Gaps = 35/194 (18%) Query: 22 RSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDS 70 + + + A +GL L+ + R +R + V ++++ Sbjct: 5 KRITVLLAEDHAVVRQGLCTLLETEGSFEVIGQAETGREAVELTATLRPEVVVMDIAMPV 64 Query: 71 LSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY- 129 L+ + + L+A +V++++A + G + S +I + ++ Sbjct: 65 LNG-LEATRQILNANAAARVLILSAHSDDEYIERM-IAVGAAGFLEKQTSAEILTKAIHE 122 Query: 130 ---------------------VINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARI 168 GR ++T RE E++++ A+G K IA + Sbjct: 123 VARGKAFYSPAIAKRMVDGQKRAQGRDGLARTSGTRLTSRETEVLQLVAEGQANKQIASV 182 Query: 169 ENCSVKTVYTHRRN 182 S+KTV HR Sbjct: 183 LGISIKTVEKHRHR 196 >UniRef50_A3TJD7 Two-component response regulator n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TJD7_9MICO Length = 207 Score = 135 bits (341), Expect = 7e-31, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 27/191 (14%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + G+ L+ + ++ D V ++LS + Sbjct: 2 IRVYLVDDHQLVRAGVRTLLESDPGLSVVGEARDGQEAVAGIDAAASDVVLMDLSMPVMD 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 + LS +V+++ + + G V V+ Sbjct: 62 G-VEATRAILSTHPDTRVLVLTSFSDRERVKE-VLAAGAIGYVLKDAEPADLLAAVHAAA 119 Query: 133 GRFLRKDIK--------------KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 + D + D+++ RE +++R+ AQG+ K +AR + +TV Sbjct: 120 RGEVPIDPRVAGALLPSAGGPSVADRLSPRETQVLRLVAQGLANKQVARALGITERTVKA 179 Query: 179 HRRNAEAKLYS 189 H ++ Sbjct: 180 HLGRVFREIGV 190 >UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides sp. JS614 RepID=A1SGL7_NOCSJ Length = 213 Score = 135 bits (341), Expect = 7e-31, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 34/193 (17%) Query: 27 IWSPHDAYFYKGLSELIVDIDRLIYLS-----------LEKIRKDFVFINLSTDSLSEFI 75 + F +GL+ L+ + + D V +++ S I Sbjct: 2 LVVDDQELFRRGLTMLLGTEAGIEVVGEAGDGVEGTNLAATAAPDVVLLDIRMPKRSG-I 60 Query: 76 NRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRF 135 AV +++++ EA Y S G + S + + V V+ Sbjct: 61 EACLAIKEAVPSAKIIMLTVSDEEADL-YEAVKSGASGYLLKDSSIEEVAQAVRVVADGQ 119 Query: 136 --LRKDIKKD-------------------KITDREMEIIRMTAQGMQPKSIARIENCSVK 174 + + ++T+RE+E++R+ A+GM + IA+ S Sbjct: 120 SLISPSMAVKLIDEFKQMSRPERDHVPGLRLTERELEVLRLVAKGMNNREIAKELFISEN 179 Query: 175 TVYTHRRNAEAKL 187 TV H RN KL Sbjct: 180 TVKNHVRNILEKL 192 >UniRef50_A8L9Z7 Two component transcriptional regulator, LuxR family n=2 Tax=Frankia sp. EAN1pec RepID=A8L9Z7_FRASN Length = 218 Score = 135 bits (341), Expect = 7e-31, Method: Composition-based stats. Identities = 32/204 (15%), Positives = 68/204 (33%), Gaps = 33/204 (16%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + GLS LI D V +++ + Sbjct: 8 IRVLLADDHRLVLDGLSALIDSVDGLTVVGEATSGEQAVDLAGTEHPDVVLMDIEMPGIG 67 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSR-DIRKELVYVI 131 + +A VV++ + + + RG + G + D+ + + V Sbjct: 68 G-VEATRRITTAQPTIAVVMLTMYGEDEFV-FAALRAGARGYLLKGAQQKDVVRTIGAVA 125 Query: 132 NGRFL-----------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 G + ++ ++T+RE E++ + A G IAR + K Sbjct: 126 RGDAVFGPDVAHRVLRTFTSPPAENAPFPELTEREREVLSLLANGWPNSRIARHLQLTPK 185 Query: 175 TVYTHRRNAEAKLYS--KIYKLVQ 196 TV + N AKL++ + +++ Sbjct: 186 TVANNVSNILAKLHAPDRTAAILR 209 >UniRef50_C6J7D2 Response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J7D2_9BACL Length = 227 Score = 135 bits (340), Expect = 8e-31, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 63/201 (31%), Gaps = 34/201 (16%) Query: 18 ECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLS---------------LEKIRKDFV 62 E + K + GL ++ ++ L + + D + Sbjct: 7 EPRMSKIKVMIVDDHDMVRMGLKTYLMQDPGFEVIAEAGDGREAVELLERGLREGQPDII 66 Query: 63 FINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRD 122 ++L ++ E S ++V++ + + L + V +S + Sbjct: 67 LMDLMMPGMNGA-EATKEVRSRFPDMKIVILTSFLEDDLVVQ-AVEAGAVSYVLKTVSAE 124 Query: 123 IRKELVY-VINGRFLRKDIKKDKIT----------------DREMEIIRMTAQGMQPKSI 165 + G + +T +RE E++ + A+G K I Sbjct: 125 ELIYALQGAYRGMPVMTGEVAQALTRGLRQRTVQGDDSGMTEREKEVLLLIAEGKSNKDI 184 Query: 166 ARIENCSVKTVYTHRRNAEAK 186 A + S+KTV TH N K Sbjct: 185 AEELHISIKTVKTHVSNLLMK 205 >UniRef50_Q1ASU8 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=Q1ASU8_RUBXD Length = 207 Score = 135 bits (340), Expect = 8e-31, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 26/187 (13%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + +GLS ++ + +R D V ++L + Sbjct: 4 IRILVADDHPMLREGLSAVLGTRPGFEVVGEAGDGEEVLRLASGLRPDVVLLDLEMPG-T 62 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + +VV+ A E L RG + G SR + V + Sbjct: 63 GGVEVLRRLRGLDDPPKVVVFTAYDDERLLE--ALREGARGCLLKGASRTEIFDAVRTVH 120 Query: 132 -NGRFLRKDI----------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 G + +I + + +T RE+E++R+ A+G+ + +AR S +TV H Sbjct: 121 AGGSVIPPEITARVLKEMRGESEPLTPRELEVLRLVARGLTNREVARALFISERTVKFHV 180 Query: 181 RNAEAKL 187 + AKL Sbjct: 181 SSLLAKL 187 >UniRef50_B2J2N1 Two component transcriptional regulator, LuxR family n=12 Tax=Cyanobacteria RepID=B2J2N1_NOSP7 Length = 232 Score = 135 bits (340), Expect = 8e-31, Method: Composition-based stats. Identities = 21/207 (10%), Positives = 67/207 (32%), Gaps = 36/207 (17%) Query: 18 ECQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINL 66 ++ + + + +GL ++ + ++ + +++ D V +++ Sbjct: 3 NDKSSPIRLLIVDDQSLIRQGLKAMLEQEPDLEVVGDAENGKVALELVAELQPDVVLMDI 62 Query: 67 STDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKE 126 + + + +V++++ ++ + +G + + + Sbjct: 63 RMPEMDGR-TATKLIMQSFPNIKVLVLSTFDDDSYLT-GAMRAGAKGYLLKDMPSSELAD 120 Query: 127 LVYVINGRFL-----------------------RKDIKKDKITDREMEIIRMTAQGMQPK 163 + + + K +IT RE E++ + G + Sbjct: 121 AIRFGHSGYTQFGPGLFDKLLVTEAASASANQNSASSKPSEITAREQEVLCLIGVGATNR 180 Query: 164 SIARIENCSVKTVYTHRRNAEAKLYSK 190 IA+ + TV TH + ++L K Sbjct: 181 EIAQQLYITEGTVKTHVTSILSRLNLK 207 >UniRef50_Q1QVM5 Two component transcriptional regulator, LuxR family n=29 Tax=Gammaproteobacteria RepID=Q1QVM5_CHRSD Length = 214 Score = 135 bits (340), Expect = 9e-31, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 67/194 (34%), Gaps = 29/194 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSLS 72 K + + ++ ++ D ++R D V +++ + Sbjct: 2 IKVLVADDHHLVRTSIARMLDSEDGLKVIAEAVDGEEAVNMARELRPDIVLMDIRMPGIG 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + + + + +VV++ A EA A ++ G + G D + I Sbjct: 62 G-LEATRKIMRGMSDIKVVIVTAFLEEAFA-QRLMDAGAAGFISKGTELDEMVRAIRAIF 119 Query: 132 -NGRFLRKDIKK--------------DKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 R++ DI + D+++ RE+++ M + I+ S KTV Sbjct: 120 DGQRYISPDIAQKVVLSKMGTQDNPFDQLSHRELQVAMMIVNCQKVSDISDRLFLSPKTV 179 Query: 177 YTHRRNAEAKLYSK 190 T+R KL + Sbjct: 180 NTYRYRIFEKLNVQ 193 >UniRef50_D1Y4N4 Two component transcriptional regulator, LuxR family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y4N4_9BACT Length = 215 Score = 135 bits (340), Expect = 9e-31, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 69/189 (36%), Gaps = 24/189 (12%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + GL+ LI + + + +EK+R D +++ + Sbjct: 2 ISIVLADDHPLTRAGLAALINEEEGLNLLGEASDGKQAWEMIEKLRPDVALLDIRMPEMD 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 I + A +V+++ A ++ ++ RG + + + + + Sbjct: 62 G-ITVARKVKDAKLPTKVIMLTAYNAQPYIV-AALSAGARGFIVKTSAVMELTQALQSVI 119 Query: 133 GR-----------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRR 181 G + ++++ RE E++ +++QG K +A + +TV H Sbjct: 120 GGGIYLDSAIANSVDSASNELEQLSPREREVLLLSSQGFPVKEVAAKLFITERTVQAHLS 179 Query: 182 NAEAKLYSK 190 + AK +K Sbjct: 180 SVYAKFGAK 188 >UniRef50_C6VTJ6 Two component transcriptional regulator, LuxR family n=2 Tax=Sphingobacteriales RepID=C6VTJ6_DYAFD Length = 207 Score = 135 bits (340), Expect = 9e-31, Method: Composition-based stats. Identities = 30/199 (15%), Positives = 61/199 (30%), Gaps = 29/199 (14%) Query: 25 KYIWSPHDAYFYKGLS-----------ELIVDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 +GL I D +L+ + + ++++ +S Sbjct: 2 DVFIIDDHPIVLQGLKNLLESREGIRVTGIFDQADSALAALDSHIPEVMLMDINLPDISG 61 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING 133 + + A +VV ++ ++ S G V D + Sbjct: 62 -VTLCQQVKQAHPEIRVVALSIHNERSVIM-SMLQSGASGYVLKNAIGDDIVAALQAAME 119 Query: 134 RFL---------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 + + + ++T RE EI+ + QG + IA S TV + Sbjct: 120 GQIYLCAETQKALNEAPGTEPKEIPRLTRREKEILELIGQGYTTQQIAAELFISTHTVES 179 Query: 179 HRRNAEAKLYS-KIYKLVQ 196 HR+N + K +V+ Sbjct: 180 HRKNLKEKFGVPNTATVVR 198 >UniRef50_A4ABN5 Two-component system response regulator n=1 Tax=Congregibacter litoralis KT71 RepID=A4ABN5_9GAMM Length = 222 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 76/209 (36%), Gaps = 33/209 (15%) Query: 18 ECQNRSDKYIWSPHDAYFYKGLSELI--------------------VDIDRLIYLSLEKI 57 E + + + + + +L+ + +++ Sbjct: 4 EAPTGTTTVVIADDHSIIRDAIYDLLSVATLPGAADSPGNFEIVGTAENGLEAIAAIKAK 63 Query: 58 RKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYA 117 R +F+++S L+ ++ ++V+ S ++ + + Sbjct: 64 RPGLLFLDVSMP-LAGGAEIIHDVRRWSPDTRIVIFTGVTSPSVLA-GILEAGADAIFSK 121 Query: 118 -GLSRDIRKEL-VYVINGRFLRKDI--------KKDKITDREMEIIRMTAQGMQPKSIAR 167 +RD+ +L + ++ R++ ++ + + +T RE +++ M G K IA+ Sbjct: 122 LSPARDMLAKLPLILMGERYVAPELTDIIRKGQQGETLTGRERQVLNMIVMGKSNKEIAQ 181 Query: 168 IENCSVKTVYTHRRNAEAKLYS-KIYKLV 195 N S KTV HR + KL + +L+ Sbjct: 182 ELNISPKTVEKHRGSVMLKLEVHSVAQLM 210 >UniRef50_A4CN07 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CN07_9FLAO Length = 217 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 64/196 (32%), Gaps = 29/196 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 + F +G+ ++ + L+ R D V ++ + Sbjct: 2 IRIALVDDHRLFLEGIRSILDREIGLEVHASVGQGVELLNLLKTTRADVVLTDIRMPGMD 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 ++ + + +V+ + E ++ RG + + ++ + ++ + Sbjct: 62 G-LSLTRQICRSFPNTRVIALTMLDHEQDVKD-LLDAGARGYLVKNVEKEELVQAIHTVA 119 Query: 133 GR----------------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 + ++T RE +++ + AQG + IA S T+ Sbjct: 120 RGDYYLSRKFRPIYKNWKSQEPRQESVRLTRRERQVLELIAQGRTSQQIAESLKLSRFTI 179 Query: 177 YTHRRNAEAKLYSKIY 192 THR+N K+ + Sbjct: 180 DTHRKNIHKKMGIRSN 195 >UniRef50_D2AX12 Response regulator receiver protein n=100 Tax=Actinobacteria (class) RepID=D2AX12_STRRD Length = 239 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 63/200 (31%), Gaps = 35/200 (17%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + +GLS ++ + ++R D V +++ L Sbjct: 11 IRVLIVDDQPLVRRGLSLILSPDPSFEVVGEAENGAQAVTLARRLRPDVVVMDIRMPVLD 70 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 + E + V +V+ ++ + + G + S + + ++ Sbjct: 71 G-VGATRELAATVPDCRVLALSTFDLDEYVV-GALRAGAYGFLPKDSSPEDLSAAIRTVH 128 Query: 133 GRFLRKDIKK----------------------DKITDREMEIIRMTAQGMQPKSIARIEN 170 + ++T RE+E+ R+ A G+ I+R + Sbjct: 129 AGEAAVAPRLLTRLISTYVRAPHGTRPTPTGLGELTPREVEVWRLMATGLDNTGISRTLD 188 Query: 171 CSVKTVYTHRRNAEAKLYSK 190 S+ TV + + KL + Sbjct: 189 ISLSTVKNYITSIFDKLAVR 208 >UniRef50_Q39C19 Two component transcriptional regulator, LuxR family n=60 Tax=Betaproteobacteria RepID=Q39C19_BURS3 Length = 271 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 69/193 (35%), Gaps = 30/193 (15%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 S + A +G+ +L+ + +++K D + +++S Sbjct: 2 SLNILLVDDHAIVRQGIRQLLIDRGVARDVTEAENGGDAVAAVDKQEFDVILLDISLPDT 61 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL-SRDIRKELVYV 130 + I + V++ + + + A + G + + + + + V Sbjct: 62 NG-IEVLKRLKRKLPRTPVLMFSMYREDQYAVR-ALKAGAAGYLSKTVNAAQMIGAIQQV 119 Query: 131 INGR-FLRKDIKK---------------DKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 GR ++ + + +K++DRE + + M A G + IA + SVK Sbjct: 120 AAGRKYVSPAMAEALAEYVSFENEPLPHEKLSDREYQTLCMLASGKRLTDIANTLSLSVK 179 Query: 175 TVYTHRRNAEAKL 187 TV +R K+ Sbjct: 180 TVSVYRSRLLEKM 192 >UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QGZ7_9SPHI Length = 218 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 34/212 (16%), Positives = 70/212 (33%), Gaps = 44/212 (20%) Query: 27 IWSPHDAYFYKGLSELIVDIDRLIYLSL-----------------EKIRKDFVFINLSTD 69 + + G+ L+ D L + + D + +++S Sbjct: 1 MLVDDHSIVRDGIRLLLEQADGLEIIDEANDGEEVLDKLKVLQPDPSLLPDLILMDISLP 60 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 +S I K +V++++ +E + G + S D + + Sbjct: 61 GMSG-IQTTQVISRLYKNVRVLMLSMHNNEDYILRSV-EAGAYGYILKDSSSDEMIKAIR 118 Query: 130 VIN------------------------GRFLRKDIKKDKITDREMEIIRMTAQGMQPKSI 165 I G + ++ K++++E EI++ GM + I Sbjct: 119 TIASGEKYYSSPVASIILSGYMQQLKKGDRHGRAERQSKLSNKEKEILQFLVDGMSSREI 178 Query: 166 ARIENCSVKTVYTHRRNAEAKLYSKI-YKLVQ 196 A SV+TV HR N +L + +LV+ Sbjct: 179 AEKLQLSVRTVDNHRANMMRRLQVRNAAELVR 210 >UniRef50_B2G7N1 Two component response regulator n=7 Tax=Lactobacillus RepID=B2G7N1_LACRJ Length = 217 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 75/206 (36%), Gaps = 33/206 (16%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + A G+S L+ Y+ +E+ D + ++LS Sbjct: 2 YNVLVADDHAIVRSGISYLVDLQPNFTVVDGTASGTDTYIRVEQGGIDILIMDLSMPPGE 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 + ++++++ + + N N + ++ + +I L +VIN Sbjct: 62 NGLITTRRIHDKFPKVKIIILSMHEEQEYINKAMANGAMSYILKSSPDSEIVNGLKHVIN 121 Query: 133 G-RFLRKDI--------------------KKDKITDREMEIIRMTAQGMQPKSIARIENC 171 G ++L +I + ++ RE E+ + A G K I++ Sbjct: 122 GEKYLDANIIVSKKDIKEINASGNILKLKGYNGLSKREKEVFPLIALGYSNKEISQKMFI 181 Query: 172 SVKTVYTHRRNAEAKLY-SKIYKLVQ 196 S KTV H+ N KL+ +LVQ Sbjct: 182 STKTVEAHKANISRKLHLHGRVELVQ 207 >UniRef50_C1TQ52 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQ52_9BACT Length = 214 Score = 134 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 34/203 (16%), Positives = 67/203 (33%), Gaps = 33/203 (16%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 K + + +G+ L+ +IR D +++ + Sbjct: 3 IKILLADDHKILREGVKALLNRQEDMEVVAEAGNGEEALSIAGEIRPDVTVMDVMMPQMD 62 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 I + +VV ++ + + G + + E V + Sbjct: 63 G-IEATRRIVEDGS-SRVVALSMYADRSFVSEM-LKVGALGFLLKDCASTELVEAVRKVM 119 Query: 133 GR--FLRKDIK----------------KDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 +L I + +T RE EI+ + A+G + +A + S+K Sbjct: 120 DGEIYLGPSISHIVAKLYVSSLHDPDDIEPLTPREKEILMLLAEGNTNREVAERLHLSIK 179 Query: 175 TVYTHRRNAEAKLYSK-IYKLVQ 196 TV THR++ KL K + LV+ Sbjct: 180 TVGTHRQHIMNKLKLKNLADLVK 202 >UniRef50_B1ZT64 Two component transcriptional regulator, LuxR family n=2 Tax=Verrucomicrobia RepID=B1ZT64_OPITP Length = 274 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 67/212 (31%), Gaps = 35/212 (16%) Query: 18 ECQNRSDKYIWSPHDAYFYKGLS---------ELIVDIDRLIYLSLE--KIRKDFVFINL 66 + GL E+I + + E K+R D V ++ Sbjct: 36 PPATTKTRIYVVDDHPLMRMGLRAMINGEPDMEVIGEAADSATATAEIMKLRPDLVIADI 95 Query: 67 STDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKE 126 S S I + G VV+++ A + R V + Sbjct: 96 SLRGNSG-IELIKNVKAFDPGIDVVVVSMYDESIYALR-VLKAGARAYVMKQDVTTRVLD 153 Query: 127 LVYVINGRFL---------------------RKDIKKDKITDREMEIIRMTAQGMQPKSI 165 + L D ++DRE+EI+ + +G+ + I Sbjct: 154 AIRRARNGQLFVSERVATQMLNRFVDGTEDGAADSPVSSLSDRELEIVNLIGEGLPTREI 213 Query: 166 ARIENCSVKTVYTHRRNAEAKLY-SKIYKLVQ 196 A S+KTV THR + + KL + +LVQ Sbjct: 214 AAKLFLSIKTVETHRVHIKRKLNLANATQLVQ 245 >UniRef50_C6DD36 Two component transcriptional regulator, LuxR family n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PC1 RepID=C6DD36_PECCP Length = 218 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 66/197 (33%), Gaps = 28/197 (14%) Query: 26 YIWSPHDAYFYKGLSELIV-DIDRLI---YLSLEKIRK-------DFVFINLSTDSLSEF 74 G ++L+ + D + Y S + D I+++ S Sbjct: 13 VALVDDHIVVRSGFAQLLALENDIQVVGQYASAAQAWPHLLKQPIDVAVIDIAMPDESG- 71 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI--N 132 ++ + ++++ + A ++ G + + + V V+ Sbjct: 72 LSLLTRLRQQRPQFRAIILSIYDTTAFV-QSALDAGAGGYLTKRCGPEELVQAVRVVSSG 130 Query: 133 GRFLRKDIKKD------------KITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 G +L D +T RE EI + G+ KSIA S KTV+ HR Sbjct: 131 GIYLCADALHAIRHQQQPPKELLALTPREREIFSLLINGISVKSIAEQLELSHKTVHVHR 190 Query: 181 RNAEAKLYS-KIYKLVQ 196 N +KL +LV Sbjct: 191 ANILSKLQCESTVELVH 207 >UniRef50_Q72LA2 Probable two-component response regulator n=1 Tax=Thermus thermophilus HB27 RepID=Q72LA2_THET2 Length = 198 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 27/194 (13%) Query: 25 KYIWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRK--------DFVFINLSTDSLSEFIN 76 + + KGLS L+ + + + + V ++L+ + Sbjct: 2 RVVLVEDHHLVRKGLSLLLEEGGHQVVAEFASAEEALATPWEAEVVLLDLNLPGMGGL-- 59 Query: 77 RDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL-SRDIRKELVYVING-R 134 + +V++++ A + RG + +D+ + L + G R Sbjct: 60 --EALPHLAQRAKVLVVSMHNEPAYVAR-AFALGARGYLPKDALDQDLLEALARLSQGLR 116 Query: 135 FLRKD-----------IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNA 183 +L + +++RE ++ + AQG +A SVKT T+++ A Sbjct: 117 YLHPSLTEALLEGQAEPGPEVLSERERAVVALLAQGYTLSQVAERLGLSVKTASTYKQRA 176 Query: 184 EAKLY-SKIYKLVQ 196 KL +LV+ Sbjct: 177 LNKLGLMDTPELVR 190 >UniRef50_A4VZN8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=52 Tax=Bacilli RepID=A4VZN8_STRS2 Length = 213 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 32/192 (16%), Positives = 61/192 (31%), Gaps = 27/192 (14%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + GL + +++ D V ++L ++ Sbjct: 4 IRVMLVDDHEMVRLGLKSYLNLQPDVEVVAEASDGEEGLAKALEVKPDVVVMDLVMPKMT 63 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 + L Q+V++ + Y + RG + S D + + Sbjct: 64 G-VEATLALLKEWPQAQIVILTSYLDNEKI-YPVLEAGARGYMLKTSSADEILAAIRKVA 121 Query: 133 GRFLRKDIKKDK--------------ITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 + + +K +T RE EI+ + A+G + IA S+KTV T Sbjct: 122 LGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLAKGYDNQRIADESFISLKTVKT 181 Query: 179 HRRNAEAKLYSK 190 H N +KL Sbjct: 182 HVSNILSKLAVS 193 >UniRef50_C6C961 Two component transcriptional regulator, LuxR family n=24 Tax=Gammaproteobacteria RepID=C6C961_DICDC Length = 211 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 67/197 (34%), Gaps = 28/197 (14%) Query: 26 YIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINLSTDSLSEF 74 G ++L+ +SL K+ D ++++ S Sbjct: 6 VALIDDHIVVRSGFAQLLSLEGDIQVVGQYASAADAGVSLLKLNVDVAVMDIAMPDESG- 64 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI--N 132 ++ + ++++ + A ++ G + + + V + Sbjct: 65 LSLLARLRQKRPTFRAIILSIYDTAAFV-QSALDAGACGYLTKRCGPEELVQAVRAVHAG 123 Query: 133 GRFLRKD------------IKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHR 180 G +L D + +T RE EI + G+ K+IA + S KTV+ HR Sbjct: 124 GSYLCADAMRALRHSRQRPKALEALTPREREIFDLLVNGLSVKTIAEQLDLSHKTVHVHR 183 Query: 181 RNAEAKLY-SKIYKLVQ 196 N KL+ + +LV Sbjct: 184 ANVLDKLHCATTVELVH 200 >UniRef50_C4RQT0 LuxR family two-component system transcriptional regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RQT0_9ACTO Length = 279 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 57/196 (29%), Gaps = 31/196 (15%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + + G+ E++ ++R D + +++ Sbjct: 60 QIRVCLADDHTLLRDGIREMLSTEPEFAVVGEASSGPEAVALAVRLRPDVLLLDVEMPG- 118 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + +V+++ + + + + + RD V + Sbjct: 119 PGAAAVIRQVRRTASETRVIVLTMHDDPDMVHE-LLEAGAVAYLLKTILRDDLVAAVRSV 177 Query: 132 NGR------------------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSV 173 R + +T RE+E++R+TA+ M IA + Sbjct: 178 VRRPTQSVLLAVSRETVERLDRQKPRTNGTPLTSRELEVLRLTAEAMSNAQIASRLFITE 237 Query: 174 KTVYTHRRNAEAKLYS 189 TV H N AKL + Sbjct: 238 ATVKRHLTNIYAKLQA 253 >UniRef50_C4KBL1 Two component transcriptional regulator, LuxR family n=8 Tax=Betaproteobacteria RepID=C4KBL1_THASP Length = 212 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 53/189 (28%), Gaps = 22/189 (11%) Query: 28 WSPHDAYFYKGLSELIVDIDRLI---------YLSLEKIRKDFVFINLSTDSLSEFINRD 78 D L+ ++ + + V +++ +S + Sbjct: 14 VVDDDEALRDSLAWMLEANGHAVAVHESGEAFLAACTPEMTGCVLLDVRMPGMSG-LEVF 72 Query: 79 NEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING----- 133 E G VV I +A V +V Sbjct: 73 EELGRRRCGLPVVFITGHGDVPMAV-SALKQGAVDFVEKPFGEREMLRVVEQCLRLERET 131 Query: 134 -----RFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLY 188 + + +T RE E++ + G K IA + S+KTV HR K+ Sbjct: 132 RDRRLQEADTARRLGLLTQREREVLELIIVGKLNKQIADVLGISIKTVEVHRARVMEKMG 191 Query: 189 -SKIYKLVQ 196 + +LVQ Sbjct: 192 AHSLAELVQ 200 >UniRef50_C4L5Q6 Two component transcriptional regulator, LuxR family n=2 Tax=Bacillales RepID=C4L5Q6_EXISA Length = 230 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 24/211 (11%), Positives = 62/211 (29%), Gaps = 45/211 (21%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + F +GL + R + + + + ++++ + Sbjct: 5 QTRIAIVDDHELFREGLKRIFDLEDEFTVVAEGRTGREAIRIAGEQKPEILIMDINMPDM 64 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + I + +V++++ E+ + + G + ++ V + Sbjct: 65 NG-IEATKQLSLLSPETRVLILSIHDDESYITH-ALEAGASGFLLKEVASTELISAVRAV 122 Query: 132 N--GRFLRK------------------------------DIKKDKITDREMEIIRMTAQG 159 G +L D ++ RE+E++ + A G Sbjct: 123 AKDGAYLHPKVTTNVLKEYRRLLQFKGEQAGRGVESRTDDPVYQLLSRREVEVLHLLADG 182 Query: 160 MQPKSIARIENCSVKTVYTHRRNAEAKLYSK 190 + I+ + S KTV H + K+ Sbjct: 183 RSNRDISDMLFISEKTVKNHVSSVLRKMDVN 213 >UniRef50_A1K960 Probable transcriptional regulator, LuxR family n=1 Tax=Azoarcus sp. BH72 RepID=A1K960_AZOSB Length = 209 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 67/201 (33%), Gaps = 31/201 (15%) Query: 25 KYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLSE 73 K + + A GL + + + + D V ++++ L+ Sbjct: 3 KVLIADDHAVVRGGLRQFLSSTEEFDIVAEAANGQTALELVRTSGCDVVLLDITLPDLNG 62 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--VI 131 + + V++ + + A N+ G + ++ V Sbjct: 63 -LEVLKRIKRSKPDLPVLIFSMFSEDEFA-LPALNAGASGYLNKDSPPAQILAALHTVVA 120 Query: 132 NGRFLRKDIKK---------------DKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 R++ + + + ++ REM ++ + ++G+ I + SVKT+ Sbjct: 121 GARYVSPSLAERLLAGTMSPGKRLPHENLSPREMAVLLLLSKGVPLTRIGEQFHLSVKTI 180 Query: 177 YTHRRNAEAKLY-SKIYKLVQ 196 T+R KL + ++ + Sbjct: 181 STYRARILEKLDLASNAEITR 201 >UniRef50_C0INV4 Two component transcriptional regulator n=1 Tax=uncultured bacterium BLR5 RepID=C0INV4_9BACT Length = 215 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 65/192 (33%), Gaps = 24/192 (12%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTD 69 + + + +KG+S LI + + D ++L Sbjct: 8 SAEIRIMCVDDHPLMHKGISALIQSQPDMTIVGAVSKAGDALATFREKVPDITLMDLRLP 67 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 + I+ L +++++ + + S G + + + +++ Sbjct: 68 DGNG-IDTMISILKEHPKARIIILTMFEGDVEI-QRALKSGACGYILKNMPPEDLLQVIR 125 Query: 130 VINGR-----------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 ++ L ++ +T RE E++++ ++G K + + S +TV Sbjct: 126 KVHSGEKKRLHPVIAATLADHFGEENLTSRETEVLQLISEGNSNKEVGNRLSISEETVKG 185 Query: 179 HRRNAEAKLYSK 190 H +N KL + Sbjct: 186 HVKNILGKLGAN 197 >UniRef50_B8CZJ8 Two component transcriptional regulator, LuxR family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZJ8_HALOH Length = 209 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 59/193 (30%), Gaps = 28/193 (14%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + +GL + + K+ + ++L L+ Sbjct: 2 IQVYLVDDHPFVLQGLKAYLNTREGIEIVGTSGNGEKAIKEIAKLNPEVAVVDLRLPGLN 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 I E G +V+++++ E ++ V + E + Sbjct: 62 G-IEVTREIKKKNPGTEVIILSSFNKEDEVIE-AIDAGALSYVMKDSRPEKLVEAIKAAR 119 Query: 133 G---------------RFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 R RK K + +T RE E++ +G + IA+ S TV Sbjct: 120 RGEPVLTPGVAKKIMKRAARKGRKTEPLTPREKEVLACLVRGNSNRDIAKTLCISETTVK 179 Query: 178 THRRNAEAKLYSK 190 TH N KL K Sbjct: 180 THVSNILKKLDVK 192 >UniRef50_B8CMA1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=3 Tax=Gammaproteobacteria RepID=B8CMA1_SHEPW Length = 196 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 71/188 (37%), Gaps = 18/188 (9%) Query: 25 KYIWSPHDAYFYKGLSEL---------IVDIDRLIYLSLEKIRKDFVFINLSTDSLSEFI 75 + I + +G++ L I + +++ + V ++S ++ I Sbjct: 3 RIIIADDHLIVAQGIAGLLKAEHQVLAIAKDGEELVELVKQHDPELVITDISMPGMTG-I 61 Query: 76 NRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY--VING 133 K +V+ + + A + G V + D + V + Sbjct: 62 AAVAALKRIKKDLRVICLTMHDEQEYAE-GAIAAGALGYVLKHEATDDLVDAVNSVLAGK 120 Query: 134 RFLRKDIK----KDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNAEAKLYS 189 ++L K ++ ++ R++ ++R+ AQG K +A S +TV H+ + + + Sbjct: 121 QYLSKSVQVEDSAPTLSARQLSVLRLLAQGKSAKQVADALFISPRTVEFHKYSIMKLIEA 180 Query: 190 K-IYKLVQ 196 K +L+Q Sbjct: 181 KSSAELIQ 188 >UniRef50_B9XH34 Two component transcriptional regulator, LuxR family n=3 Tax=bacterium Ellin514 RepID=B9XH34_9BACT Length = 226 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 64/202 (31%), Gaps = 31/202 (15%) Query: 18 ECQNRSDKYIWSPHDAYFYKGLSELIVDIDR-----------LIYLSLEKIRKDFVFINL 66 E + S K +A + L+E + + + + D V +++ Sbjct: 11 EHADVSTKIAIVEDNATLRQYLAEFVAGAPGNRCVCACGSAEEALVKIPSLNPDVVLMDI 70 Query: 67 STDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKE 126 S I + QV+++ K + + + G V E Sbjct: 71 HLPGESG-IVCTARLREKLPNLQVIMLTVYKDTKMI-FQALKAGACGYVLKRSDDKEILE 128 Query: 127 LVYVINGR-----------------FLRKDIKKD-KITDREMEIIRMTAQGMQPKSIARI 168 + + + + +++ RE EI+ + A+G+ K I Sbjct: 129 AIAEVRAGGAPMTSEIARMVVRSFIADTPEKDETGQLSGREQEILALLAEGLSNKEIGSK 188 Query: 169 ENCSVKTVYTHRRNAEAKLYSK 190 N S TV TH + KL+ + Sbjct: 189 LNISFTTVRTHLMHIYEKLHVR 210 >UniRef50_D1XHI5 Two component transcriptional regulator, LuxR family n=4 Tax=Streptomyces RepID=D1XHI5_9ACTO Length = 222 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 60/200 (30%), Gaps = 38/200 (19%) Query: 27 IWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSEFI 75 + + A +G+ L+ + + D V ++L + Sbjct: 2 VVADDQAIVREGIVMLLGLLPGIEVVGAAKDGDEAVALVAEKAPDVVLMDLRMPRCDG-V 60 Query: 76 NRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVINGRF 135 QVV++ + + + + RG + + + + + Sbjct: 61 EATRRIRKEHPRTQVVVLTTFADDD-SLFTALQAGARGYLTKDARGEEIVQAIDAVMSGE 119 Query: 136 LR-------------------------KDIKKDKITDREMEIIRMTAQGMQPKSIARIEN 170 D +T RE E++ + A+G+ + IAR + Sbjct: 120 AGLSPKVQRRLLERVTGSETVPAPCALPSELPDGLTPREAEVLVLIAEGLSNREIARALH 179 Query: 171 CSVKTVYTHRRNAEAKLYSK 190 S TV TH N AK ++ Sbjct: 180 VSAATVKTHINNLFAKTGAR 199 >UniRef50_A3WDJ9 Two-component response regulator n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WDJ9_9SPHN Length = 217 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 30/193 (15%), Positives = 62/193 (32%), Gaps = 29/193 (15%) Query: 25 KYIWSPHDAYFYKGLSELIV----------DIDRLIYLSLEKIRKDFVFINLSTDSLSEF 74 + + +GL ++ + D + +++ + Sbjct: 5 RILIVDDHQLAREGLRAVLAGDGMEVVGLASTGEEAVELAGSLVPDVILMDVRLGDGIDG 64 Query: 75 INRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSR-DIRKELVYVING 133 + + ++ +VV++ + + G V D+R + V+ G Sbjct: 65 LEATRQVVALGLPIKVVMLTLHEMPGYVRE-ALAAGAAGYVLKDTEIGDLRAAINQVMAG 123 Query: 134 RFL--------------RKDIKKDK---ITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 + R + K D +T RE E++ + A+G+ K IAR + S TV Sbjct: 124 QSALPLDLVSAAMRAENRPEPKGDLSQILTSREQEVVELVAEGLTNKEIARKLDISPATV 183 Query: 177 YTHRRNAEAKLYS 189 H KL Sbjct: 184 KVHVERLIGKLGV 196 >UniRef50_B9XAW3 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAW3_9BACT Length = 224 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 78/213 (36%), Gaps = 34/213 (15%) Query: 16 HMECQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFI 64 + Q R + + +G ++LI V + S+ ++ D I Sbjct: 5 KLPPQKRKYQILLVDDHPIMREGFTQLINNEPDLHVCAHVGNATKAFDSIGSLKPDLAII 64 Query: 65 NLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIR 124 +++ S I S + ++ ++ + + RG V + + Sbjct: 65 DIAL-GSSSGIEVIKNIHSRWNNQLLMALSMHEESVY-GERALRAGARGYVMKNETTEEI 122 Query: 125 KELVYVINGR--FLRKDIK------------------KDKITDREMEIIRMTAQGMQPKS 164 + + +L K ++ ++++DRE+E+ ++ G + Sbjct: 123 MRAIREVLRGEVYLSKQMRSLVVQKFLNGEPAHGHFGVEQLSDRELEVFQLIGSGRRTGQ 182 Query: 165 IARIENCSVKTVYTHRRNAEAKLYSKIY-KLVQ 196 IA + S+KTV T+R + + KL + +LV+ Sbjct: 183 IAAELHLSIKTVETYRAHIKEKLMLRNGMELVR 215 >UniRef50_B2JVJ8 Two component transcriptional regulator, LuxR family n=16 Tax=Proteobacteria RepID=B2JVJ8_BURP8 Length = 219 Score = 133 bits (336), Expect = 3e-30, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 66/193 (34%), Gaps = 33/193 (17%) Query: 25 KYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTDSLSE 73 + A F KG+++LI R+ +++ D V I+L+ ++ Sbjct: 6 TVLLIDDHALFRKGVAQLIQMNPAFRVVGEASSGRVGVDLAVRLKPDVVLIDLNMPDMNG 65 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRK-------- 125 I + +++ +E + G + + + Sbjct: 66 -IETLEMMRQHGVDARFLMLTVSDNERDVV-AALRAGASGYLLKDMEPEELCLNLQKALQ 123 Query: 126 -----------ELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 +L + ++ + + ++ RE E++ +GM K IAR + SV Sbjct: 124 GTAVLSEAVTGKLFHALSAGQPLPANQSN-LSVREQEVLDYLVEGMCNKEIARKLDISVG 182 Query: 175 TVYTHRRNAEAKL 187 TV H ++ KL Sbjct: 183 TVKVHVKHLLHKL 195 >UniRef50_Q47FR0 Two component transcriptional regulator, LuxR family n=9 Tax=Betaproteobacteria RepID=Q47FR0_DECAR Length = 218 Score = 133 bits (336), Expect = 3e-30, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 69/203 (33%), Gaps = 32/203 (15%) Query: 24 DKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + + GL ++ D + L K D + ++L+ + Sbjct: 2 IRTLIADDHDILRIGLKHILSDTGDIVVTAEASNGIEALVELRKGTFDALVLDLTMPGRN 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN 132 I + +++++ K + A + G + + + + + + Sbjct: 62 G-IELIKQIKGEFPKLPILILSMHKEDIYAVRS-LKAGASGYLCKDSAETLLADAIRKVA 119 Query: 133 GRFL------------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 L D +TDRE +I M QG+ I R N SVK Sbjct: 120 DGGLFINQAVAEKLTLQILHGRDTDAPHTGLTDREHQIFLMILQGLGVTEIGRQLNLSVK 179 Query: 175 TVYTHRRNAEAKLYSK-IYKLVQ 196 TV TH+ + AK+ + +LV+ Sbjct: 180 TVSTHKASILAKMNLRNSAELVR 202 >UniRef50_C6CZA5 Two component transcriptional regulator, LuxR family n=4 Tax=Firmicutes RepID=C6CZA5_PAESJ Length = 221 Score = 133 bits (336), Expect = 3e-30, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 62/200 (31%), Gaps = 34/200 (17%) Query: 19 CQNRSDKYIWSPHDAYFYKGLSELIVDIDRLIYLS---------------LEKIRKDFVF 63 + K + GL ++ + ++ L D + Sbjct: 2 TGTNTLKVMIVDDHDMVRTGLRTYLMLEPKFEVVAEAGSGQAAISMLEAGLPSGLPDVIL 61 Query: 64 INLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDI 123 ++L + I + + +++++ + + Y + V +S + Sbjct: 62 MDLMMPGMDG-IETTRQLIVEYPNLKIIMLTSFLEDDKV-YGAIEAGAVSYVLKTVSAEE 119 Query: 124 RKELVY-----------------VINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIA 166 ++ R +++T+RE E++ + A+G K I Sbjct: 120 LIYALHGAVKGMPVMTADVSQALTRGLRQRTAQSGDEELTEREKEVLLLIAEGRSNKEIG 179 Query: 167 RIENCSVKTVYTHRRNAEAK 186 + SVKTV TH N K Sbjct: 180 EELHISVKTVKTHVSNLLMK 199 >UniRef50_B1WQK4 Two-component response regulator n=19 Tax=Cyanobacteria RepID=B1WQK4_CYAA5 Length = 247 Score = 133 bits (336), Expect = 3e-30, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 58/198 (29%), Gaps = 32/198 (16%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 S + + D GL + + + +++ D V +++ L Sbjct: 37 SMRILIVEDDPLMQLGLEQALSEHPNFEIIGQAEDGYTGVQQALELKPDLVVMDIGLPRL 96 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 I + VV++ + + +S G S + + Sbjct: 97 DG-IAATKQIKEQEPNIHVVMLTSHTLQTEVV-AALSSGADAYCIKGASLERLLAAIEAA 154 Query: 132 --NGRFLRKDIK-----------------KDKITDREMEIIRMTAQGMQPKSIARIENCS 172 +L I +++RE+E++++ +G IA S Sbjct: 155 QDGATYLDPQIARLVLDNLKSPNPEPNQNIALLSERELEVLKLIVEGKSNNEIAEDLYLS 214 Query: 173 VKTVYTHRRNAEAKLYSK 190 T+ TH R KL Sbjct: 215 TNTIKTHVRGIMNKLAVD 232 >UniRef50_Q1IK52 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=Q1IK52_ACIBL Length = 211 Score = 133 bits (336), Expect = 3e-30, Method: Composition-based stats. Identities = 25/193 (12%), Positives = 62/193 (32%), Gaps = 23/193 (11%) Query: 19 CQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLS 67 ++S + + +GL +I D ++L Sbjct: 4 AASKSIRILSVEDHPVVREGLVSIIGSQPDMVLVAQATNGSDAIAQFRTHHPDITLMDLR 63 Query: 68 TDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKEL 127 +S + +V+++ S + + + + + + Sbjct: 64 LPGISGT-DALISIRGEFPRARVIILTTSDSHTEIDR-ALRAGAAAYILKSMPMNEMLAV 121 Query: 128 VYVINGR----------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVY 177 + ++ L ++I ++ +T RE+E++ + G + K IA + S TV Sbjct: 122 IRSVHAGARHIPQEVASRLAENIGEESLTSRELEVLHLIRDGHRNKQIADELSISETTVN 181 Query: 178 THRRNAEAKLYSK 190 H +N K+ + Sbjct: 182 FHIKNIVGKMGAN 194 >UniRef50_P31802 Nitrate/nitrite response regulator protein narP n=142 Tax=Bacteria RepID=NARP_ECOLI Length = 215 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 67/196 (34%), Gaps = 30/196 (15%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + + +G+ +L+ ++ D + ++L+ + Sbjct: 6 PFQVMIVDDHPLMRRGVRQLLELDPGSEVVAEAGDGASAIDLANRLDIDVILLDLNMKGM 65 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 S + V + ++L + S + + ++ G + ++ E + Sbjct: 66 SGLDTLNALRRDGVTAQIIILTVSDASSDV--FALIDAGADGYLLKDSDPEVLLEAIRAG 123 Query: 132 NGRFLRKDIKKDK-----------------ITDREMEIIRMTAQGMQPKSIARIENCSVK 174 + ++ +T+RE++++ AQG+ K IA + N S + Sbjct: 124 AKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQGLSNKQIASVLNISEQ 183 Query: 175 TVYTHRRNAEAKLYSK 190 TV H RN KL + Sbjct: 184 TVKVHIRNLLRKLNVR 199 >UniRef50_C6X598 Two-component response regulator n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X598_FLAB3 Length = 226 Score = 133 bits (335), Expect = 3e-30, Method: Composition-based stats. Identities = 31/204 (15%), Positives = 70/204 (34%), Gaps = 35/204 (17%) Query: 16 HMECQNRSDKYIWSPHDAYFYKGLSELIVDID-----------RLIYLSLEKIRKDFVFI 64 M + + + +GL L+ D D + L + D + + Sbjct: 2 KMNKASDKIRILIVDDHQLMIEGLKSLLEDEDSISFVAGATTMKETLDFLAEHEIDVILM 61 Query: 65 NLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIR 124 +++ S I + + +V+ + + ++ + + G V + Sbjct: 62 DVNMPDSSG-IEITKKVRALYPHPKVIALTMHEDISIISKMI-KAGASGYVLKRTNMHEV 119 Query: 125 KELVYVI--NGRFLRKDIK--------------------KDKITDREMEIIRMTAQGMQP 162 + + + NGR+L ++ K ++ RE+E++++ A+ Sbjct: 120 IDALKTVHQNGRYLSTSVQNVIMDNLMLPEDLMDAKDDNKPVLSGRELEVLKLIAKEFSN 179 Query: 163 KSIARIENCSVKTVYTHRRNAEAK 186 + I S +TV HRRN K Sbjct: 180 EQIGEQLFISERTVEAHRRNIFMK 203 >UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KCH2_PSEF5 Length = 208 Score = 133 bits (335), Expect = 4e-30, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 29/200 (14%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDIDR----------LIYLSLEKIRKDFVFINLSTDSLS 72 S + + + + + + +R D V +++S + + Sbjct: 2 SKSVLIVDDHPVVCEAIRKTLESQGYTIVGETADGISALNMILSLRPDIVILDVSLEKMD 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + A +V++ A+ + A + G V + V I Sbjct: 62 G-LTVLKRIAQANLDVRVLVFTAQSVDTYAMRC-LQAGASGFVSKNEPLTKLLKAVDTIV 119 Query: 132 ---------------NGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 GR +T+RE+E++++ A+G+ IA + S KTV Sbjct: 120 EGYVFFPKKSMPFSDGGRGKHSSDVLAALTNRELEVLKLLAEGLTNLEIAEKLHLSNKTV 179 Query: 177 YTHRRNAEAKLYS-KIYKLV 195 H+ N +KL + LV Sbjct: 180 SGHKINILSKLGVTSVVDLV 199 >UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92 Tax=Burkholderiales RepID=Q3JFS6_BURP1 Length = 282 Score = 133 bits (335), Expect = 4e-30, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 59/192 (30%), Gaps = 30/192 (15%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDRLI-----------YLSLEKIRKDFVFINLSTDSLS 72 K + + A GL ++ + + + ++LS + Sbjct: 69 IKVLIADDHALVRDGLRHILQNASGYEVAGEAFDSATTIALVRSTPAQVLVLDLSMPGRN 128 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + + +++++ + A + + G + + V + Sbjct: 129 G-VELIKQIKEEKPALRILVLTMHAEQQYAVR-AFRAGASGYLTKESASSELVGAVTKVA 186 Query: 132 -NGRFLRKDIKKD---------------KITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 G ++ + + +++DRE ++ R A G IA S KT Sbjct: 187 SGGVYVSLAMAERFAQSLNEPAETLPHHRLSDREFDVFRRIASGQTLTQIADELCVSAKT 246 Query: 176 VYTHRRNAEAKL 187 V T++ K+ Sbjct: 247 VSTYKTRILEKM 258 >UniRef50_Q11VM8 Two-component response regulator n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11VM8_CYTH3 Length = 227 Score = 133 bits (335), Expect = 4e-30, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 63/214 (29%), Gaps = 40/214 (18%) Query: 21 NRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTD 69 + K + F G+ +LI L+ D V +++ Sbjct: 3 TKKIKVFIADDHEIFRDGVRQLISNESDMEVVGTASSGEEALELLKDNHADVVIMDIRMS 62 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDI-RKELV 128 ++ + L ++ + + G + S I K + Sbjct: 63 GMNG-LETSRAILKNDSNTHILFFSLYDRDDYVV-TALEMGASGYILKDTSNKIFLKGIR 120 Query: 129 YVINGRFLRKDIKKDKI------------TD-------------REMEIIRMTAQGMQPK 163 V NG+F D + T RE +I+ +G K Sbjct: 121 AVSNGQFYFTGDVTDVLIKKYKELKDVKNTPEISSSSIQSSLSKREYQILNRIREGKTNK 180 Query: 164 SIARIENCSVKTVYTHRRNAEAKLYSKI-YKLVQ 196 IA N SV+TV THR N K +L++ Sbjct: 181 EIAEEYNLSVRTVETHRMNILRKFNVSNFDELIK 214 >UniRef50_C7R398 Two component transcriptional regulator, LuxR family n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R398_JONDD Length = 230 Score = 133 bits (335), Expect = 4e-30, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 62/201 (30%), Gaps = 37/201 (18%) Query: 25 KYIWSPHDAYFYKGLSELIV-----------DIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + I DA GL ++ + D V +++ + + Sbjct: 10 RIIIVDDDALVRAGLRMILGGDPGITVVAEGTHGEEAVSLYAAHQPDVVLMDIRMP-VRD 68 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVIN- 132 ++ + ++ V+++ ++ + RG + S V + Sbjct: 69 GLSATKDIVTRWPHANVLVLTTFDTDEFIVK-ALRAGARGFLLKDTSPPDLVRAVNLAGD 127 Query: 133 -----------------------GRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIE 169 GR + +++T+RE+++ + AQG + I++ Sbjct: 128 GHPTLSPSVTAQLIAKVSEEPDTGRQRQARRMVEQLTERELDVAQQIAQGKSNQEISQTL 187 Query: 170 NCSVKTVYTHRRNAEAKLYSK 190 S+ TV TH K Sbjct: 188 YMSIPTVKTHISRIFTKFDVD 208 >UniRef50_Q1AST2 Two component transcriptional regulator, LuxR family n=2 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AST2_RUBXD Length = 232 Score = 133 bits (334), Expect = 4e-30, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 58/208 (27%), Gaps = 34/208 (16%) Query: 15 NHMECQNRSDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVF 63 + M + I G ++ R ++R D V Sbjct: 2 HGMSGAGGPVRLIVVDDHDLIRAGFRLVLEQEPDFEVVGEASSGREAIELCRRLRPDVVV 61 Query: 64 INLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLS-RD 122 ++L+ + + V+++ A + + G V Sbjct: 62 MDLAMPGVDG-LEATRRIKEEHPQVAVLVVTALEDPEYMLE-ALKAGAAGYVLKSSPLPR 119 Query: 123 IRKELVYVINGRF--------------------LRKDIKKDKITDREMEIIRMTAQGMQP 162 + L +++G +++T RE E++ + A+G Sbjct: 120 VISALRRLLSGESPLNQELAARLIQDLARRPGGGGNPPPAEELTAREREVLVLMARGRTN 179 Query: 163 KSIARIENCSVKTVYTHRRNAEAKLYSK 190 IAR S T +H +N KL Sbjct: 180 PEIARELVISRGTAKSHVQNIIRKLGVS 207 >UniRef50_C7LUF3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LUF3_DESBD Length = 203 Score = 133 bits (334), Expect = 4e-30, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 23/186 (12%) Query: 25 KYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSLSE 73 + + A +G +I+D L LE R D V +++S S Sbjct: 2 RILIVDDHAVVRRGTMNIIIDRFPECEFSEAGTLHEARLVLEDARFDLVILDISLPDGSG 61 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI-- 131 ++ G V++++ A + RG + + + +E + I Sbjct: 62 -LDFLEYAQEHSPGLPVIMLSMHHEIEYA-QRCLSLGARGYLSKNSAPEELEEAMISILD 119 Query: 132 NGRFLRKDI--------KKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYTHRRNA 183 G ++ + D ++ +E ++ R A+G +IA+ SVKT T+R A Sbjct: 120 GGIYVNPSLLDSRRSTSAMDTLSRQERDVARRLAKGETMTAIAQAMGVSVKTASTYRTRA 179 Query: 184 EAKLYS 189 KL Sbjct: 180 MRKLGI 185 >UniRef50_B2JVP2 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JVP2_BURP8 Length = 215 Score = 133 bits (334), Expect = 4e-30, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 67/195 (34%), Gaps = 33/195 (16%) Query: 23 SDKYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTDSL 71 + A F KG+++LI + +++ D V I+L+ + Sbjct: 3 PHTVLLIDDHALFRKGVAQLIQMNPSFEVTGEATSGQDGIEMAVRLKPDVVLIDLNMPRM 62 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRK------ 125 + I A + +++ +E + G + + + Sbjct: 63 NG-IETLEGMRQAGVDARFIMLTVSDNERDVV-AALRAGAHGYLLKDMDPEDLCVSLQKA 120 Query: 126 -------------ELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCS 172 LV+ ++G + D +T RE+E+ G+ K+IAR + S Sbjct: 121 LKGTAVLSESVTGSLVHALSGGQRIPAAQND-LTARELEVFDYLVAGLCNKAIARKLDIS 179 Query: 173 VKTVYTHRRNAEAKL 187 V TV H ++ KL Sbjct: 180 VGTVKVHVKHVLRKL 194 >UniRef50_D1C9Z8 Two component transcriptional regulator, LuxR family n=4 Tax=Bacteria RepID=D1C9Z8_SPHTD Length = 212 Score = 133 bits (334), Expect = 4e-30, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 66/196 (33%), Gaps = 31/196 (15%) Query: 24 DKYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTDSLS 72 + + +GL ++ ++ D V ++L+ Sbjct: 2 IRILVVDDHPVVREGLVAILEAQEDLTVVGEAGDGDQAVQQYRDLKPDVVLMDLAMPGTD 61 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + E +VV++ A ++ + G + G R+ V V+ Sbjct: 62 G-VQAIQEIKRIDPNARVVVLTAYDTDERILQ-AVQAGASGYLLKGAPREDIFRAVRVVY 119 Query: 132 -----------------NGRFLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVK 174 G LR + ++++T RE++++ + A+G++ K IA + + + Sbjct: 120 RGGSLLEPVVAGKLLNRMGDLLRGEPVEEELTARELDVLTLMARGLRNKEIAYELSITER 179 Query: 175 TVYTHRRNAEAKLYSK 190 TV H KL Sbjct: 180 TVKFHANAIYRKLDVS 195 >UniRef50_D1VBH1 Two component transcriptional regulator, LuxR family n=29 Tax=Actinobacteria (class) RepID=D1VBH1_9ACTO Length = 248 Score = 133 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 63/209 (30%), Gaps = 37/209 (17%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + + + + G L+ ++R D V +++ + Sbjct: 25 PIRVLIADDEGLVRAGFRALVEATPDLTVVAEAADGVAAVRESRRLRPDVVLMDIRMPVM 84 Query: 72 SEFINRDNEWLSAV-KGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYV 130 + AV G ++++ + + + G + + + Sbjct: 85 NGLEATRLIAADAVRPGPGILVVTTFDDDEYV-FEALRAGAAGFILKDTQPENLLAAIRT 143 Query: 131 ING-----------RFLRKDIKKD------------KITDREMEIIRMTAQGMQPKSIAR 167 + R + ++ +TDRE ++ A G IA+ Sbjct: 144 VAAGDALLAPGVTRRLIAAFVRVPAPPASPLTGLASTLTDRERAVLTQIANGYSNAEIAQ 203 Query: 168 IENCSVKTVYTHRRNAEAKLYSK-IYKLV 195 SV TV TH + AKL ++ +LV Sbjct: 204 ALYVSVSTVKTHVGHLLAKLAARDRAQLV 232 >UniRef50_B5JPJ0 Sigma-70, region 4 family n=3 Tax=Verrucomicrobiales RepID=B5JPJ0_9BACT Length = 213 Score = 133 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 32/200 (16%), Positives = 67/200 (33%), Gaps = 31/200 (15%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIV-----------DIDRLIYLSLEKIRKDFVFINLSTD 69 S K + L +I L K R D V +++ Sbjct: 3 EASIKIAIVEDQDTTRESLEAIINLEHSMECILTCSSGEEALSKLPKARPDVVLMDIMMP 62 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 ++ I ++ + ++V+I + L Y + G + + + + Sbjct: 63 YMTG-IECASKLKDLMPEIEIVMITVYQDPDLI-YSALRAGACGYLLKRSTPEQVTTAIR 120 Query: 130 VINGR--------------FLRKDIKK----DKITDREMEIIRMTAQGMQPKSIARIENC 171 + R++ + D +++RE E++ AQG K IA + Sbjct: 121 DAKRGGMPMSVEVARRVISYFRQEAQVSSDVDSLSNREREVLEFVAQGFTNKEIAAKLSV 180 Query: 172 SVKTVYTHRRNAEAKLYSKI 191 + +TV+ H +N KL+ + Sbjct: 181 TPETVHWHLKNCYKKLHVRT 200 >UniRef50_A2SCN0 Two-component response regulator n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SCN0_METPP Length = 210 Score = 133 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 63/201 (31%), Gaps = 30/201 (14%) Query: 24 DKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLS 72 + + A +G L+ +R V I+L + Sbjct: 3 IRVMLVDDHAIVREGYKRLLELQSDIVVVAEAGDGGEALNQWRALRPAVVVIDLGLPGMG 62 Query: 73 EFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI- 131 + + +++ + + + G V + V + Sbjct: 63 G-LELIARLRQRDEACRMLAFSMHRDAVWVAQ-ALRAGALGYVTKSSAPSQLVAAVREVN 120 Query: 132 -NGRFLRKDIKKDK--------------ITDREMEIIRMTAQGMQPKSIARIENCSVKTV 176 R L D+ + ++ RE E++R+ G P+ IA+ + SVKTV Sbjct: 121 QGRRVLSPDVSGEVASALLDPQDSAAHGLSPREFEVMRLLVGGRTPQEIAQSLSLSVKTV 180 Query: 177 YTHRRNAEAKLY-SKIYKLVQ 196 + ++KL + ++L + Sbjct: 181 HNVHYQIKSKLGTASDFELAR 201 >UniRef50_C6CGT1 Two component transcriptional regulator, LuxR family n=21 Tax=Proteobacteria RepID=C6CGT1_DICZE Length = 213 Score = 133 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 30/195 (15%), Positives = 68/195 (34%), Gaps = 30/195 (15%) Query: 21 NRSDKYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTD 69 +R K + + +GL ++ + L + + D + +++S Sbjct: 2 DRLIKLMIADDHVIMREGLKQIFALDENLEVVAEAGTGSQVLSQLRENQVDLLLLDMSMP 61 Query: 70 SLSEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY 129 + ++ +++++ +A S G + + + Sbjct: 62 GICGE-ELIIRIVAQYPRLPILVLSMYSEPQIARR-VLKSGALGYITKDKDPEALLSAIR 119 Query: 130 VI--NGRFL---------------RKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCS 172 + R++ R D + + +T RE +I+ M AQG+ +IA + S Sbjct: 120 RVAQGARYIDHSIAEQIVFADCQTRGDGRHELLTSREHQIMVMLAQGLGVNAIAEMLAIS 179 Query: 173 VKTVYTHRRNAEAKL 187 KTV TH+ K+ Sbjct: 180 NKTVSTHKSRLMEKM 194 >UniRef50_A9WKI8 Response regulator receiver n=3 Tax=Chloroflexaceae RepID=A9WKI8_CHLAA Length = 209 Score = 133 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 56/190 (29%), Gaps = 25/190 (13%) Query: 23 SDKYIWSPHDAYFYKGLSELIVD-----------IDRLIYLSLEKIRKDFVFINLSTDSL 71 + + +GLS + + D + +++ Sbjct: 3 PIRVALVDDHSIVRRGLSAYLAAQPDIVVVGEAANGESALQMASTWQADVIVMDVLMPGG 62 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVI 131 + I + + +++++ +A + + + E + Sbjct: 63 IDGIETTRQLKRLIPHTHIIILSGYADDARV-IGALRAGAITYIEKESQPEQLLEAIRGA 121 Query: 132 NGR-------------FLRKDIKKDKITDREMEIIRMTAQGMQPKSIARIENCSVKTVYT 178 + D +T+RE E++++ A+G+ IA S +TV T Sbjct: 122 MAGKAVLAPALMQRILEAQTSKAADTLTEREREVLKLVAEGLTNAEIASRLTVSEETVKT 181 Query: 179 HRRNAEAKLY 188 H + KL Sbjct: 182 HVASILRKLG 191 >UniRef50_C5BV53 Two component transcriptional regulator, LuxR family n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BV53_BEUC1 Length = 220 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 65/205 (31%), Gaps = 34/205 (16%) Query: 24 DKYIWSPHDAYFYKGLSELIVDIDRLIYLSLE----------KIRKDFVFINLSTDSLSE 73 + + +G++ L+ + ++R V ++L S Sbjct: 2 TTVLVVDDHPVYRRGIAHLLAAGGYDVVGEAAGVREAEQLALRLRPSVVIMDLGLPDGSG 61 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVYVING 133 ++ + ++A G +VV++ + + + G V D V + Sbjct: 62 -VDATSRIVAANPGTRVVVVTLFDDDG-SVQRALAAGAAGYVVKDADPDEILAAVRAVET 119 Query: 134 RFLRKDIKKDK------------------ITDREMEIIRMTAQGMQPKSIARIENCSVKT 175 + +T RE +++ + +G+ ++IA S KT Sbjct: 120 GAMVLGAHLAGAVLGAAAVAARPAEDVWGLTPRERQVLDLLVKGLTNRAIAERLGLSGKT 179 Query: 176 VYTHRRNAEAKLY----SKIYKLVQ 196 V + KL + +LV+ Sbjct: 180 VANNVSVILGKLGATDRVEATQLVR 204 >UniRef50_A4VLT5 DNA-binding response regulator, LuxR family n=15 Tax=Pseudomonas RepID=A4VLT5_PSEU5 Length = 219 Score = 132 bits (333), Expect = 5e-30, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 32/202 (15%) Query: 25 KYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSLSE 73 K + A +G + L+ + +++ + V ++L +S Sbjct: 2 KILLVDDHAVVRQGYASLLKALLPEVSVSEAESGEQALQQVQESIPNLVVLDLGLPGISG 61 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRKELVY-VIN 132 + + V++ + AL ++ G + + D+ E V V+ Sbjct: 62 -LETCRRLRQRLPLLPVLVFSMHDELALVRQ-ALDAGASGYLTKRCAPDVLVEAVRKVLA 119 Query: 133 GRFLRKDIKKDKI-----------------TDREMEIIRMTAQGMQPKSIARIENCSVKT 175 G+ + + T REMEI M A+G+ + IA S KT Sbjct: 120 GQTFIEQPLATDLACQRPSRSPVRGRLVDMTPREMEIFIMLARGIGNREIAERLCISSKT 179 Query: 176 VYTHRRNAEAKLYSKI-YKLVQ 196 V H ++KL +LV Sbjct: 180 VSNHLALLKSKLEVSSQAELVH 201 >UniRef50_D1C6S1 Two component transcriptional regulator, LuxR family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6S1_SPHTD Length = 223 Score = 132 bits (333), Expect = 6e-30, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 61/200 (30%), Gaps = 34/200 (17%) Query: 23 SDKYIWSPHDAYFYKGLSELI-----------VDIDRLIYLSLEKIRKDFVFINLSTDSL 71 + A F +GL+ L+ ++ D V +++ + Sbjct: 3 QISLLLVDDHALFREGLASLLSYQPDFTVVGEAASGEEAVERARELVPDVVLMDIDLPGI 62 Query: 72 SEFINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGLSRDIRK------ 125 I + +VV++ + +G + + Sbjct: 63 DG-IEATRRIKRQLPEVRVVMLTVYDDHERLFQSI-KAGAQGYLIKNIRSAELLDQLRGL 120 Query: 126 -----ELVYVINGRFLRKDIKKDK----------ITDREMEIIRMTAQGMQPKSIARIEN 170 + + R L + + ++ ++ RE+E++ + A + K IA + Sbjct: 121 ARGEAAISRRMAARILEEFARLERQAEILEPDGGLSPREVEVLELVALRLSNKEIAARLS 180 Query: 171 CSVKTVYTHRRNAEAKLYSK 190 S TV H +N AKL Sbjct: 181 ISEHTVKNHLKNILAKLQLS 200 >UniRef50_D1C3I4 Two component transcriptional regulator, LuxR family n=2 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3I4_SPHTD Length = 249 Score = 132 bits (333), Expect = 6e-30, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 62/209 (29%), Gaps = 45/209 (21%) Query: 25 KYIWSPHDAYFYKGLSELIVDI-----------DRLIYLSLEKIRKDFVFINLSTDSLSE 73 + F +GL LI + + R I++ ++ Sbjct: 12 TVLIVDDHPLFRQGLRRLIEEGGAFKVVAEATSGHEAIREADIHRPSIALIDIQLPGVTG 71 Query: 74 FINRDNEWLSAVKGKQVVLIAARKSEALANYWYYNSNIRGVVYAGL-SRDIRKELVYVIN 132 +N +++++ + + + + + ++++ L V+ Sbjct: 72 -LNVARILKKQHPSMHIIILSMHVDDERL-FEAVRAGASAFLTKDIEAQELISSLDRVVQ 129 Query: 133 GRFL-------------------------------RKDIKKDKITDREMEIIRMTAQGMQ 161 G L D K+ ++ RE+E++ AQG+ Sbjct: 130 GEQLINLEVMSRPELAWRVLSEFRQLTGDDGEAGPASDPKRLPLSVREVEVLDCVAQGLS 189 Query: 162 PKSIARIENCSVKTVYTHRRNAEAKLYSK 190 K IA + +TV H + KL Sbjct: 190 NKEIAEALFITEQTVKNHMTSVLRKLQVN 218 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.159 0.467 Lambda K H 0.267 0.0487 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,099,555,722 Number of Sequences: 3077464 Number of extensions: 43609261 Number of successful extensions: 194682 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 8927 Number of HSP's successfully gapped in prelim test: 11125 Number of HSP's that attempted gapping in prelim test: 172202 Number of HSP's gapped (non-prelim): 22578 length of query: 196 length of database: 1,040,396,356 effective HSP length: 122 effective length of query: 74 effective length of database: 664,945,748 effective search space: 49205985352 effective search space used: 49205985352 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 90 (39.0 bits)