Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	E	L	D	G	I	K	Q	F	T	T	V	V	A	D	S	G	D	I	E	S	I	R	H	Y	H	P	Q	D	A	T	T	N	P	S	L	L	L	K	A	A	G	L	S	Q	Y	E	H	L	I	D	D	A	I	A	W	G	K	K
Secondary structure
SS confidence
Disorder		?	?	?	?		?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		N	G	K	T	Q	E	Q	Q	V	V	A	A	C	D	K	L	A	V	N	F	G	A	E	I	L	K	I	V	P	G	R	V	S	T	E	V	D	A	R	L	S	F	D	K	E	K	S	I	E	K	A	R	H	L	V	D	L	Y	Q	Q
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	G	V	E	K	S	R	I	L	I	K	L	A	S	T	W	E	G	I	R	A	A	E	E	L	E	K	E	G	I	N	C	N	L	T	L	L	F	S	F	A	Q	A	R	A	C	A	E	A	G	V	F	L	I	S	P	F	V	G	R
Secondary structure
SS confidence
Disorder		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	Y	D	W	Y	Q	A	R	K	P	M	D	P	Y	V	V	E	E	D	P	G	V	K	S	V	R	N	I	Y	D	Y	Y	K	Q	H	H	Y	E	T	I	V	M	G	A	S	F	R	R	T	E	Q	I	L	A	L	T	G	C	D	R
Secondary structure
SS confidence
Disorder								?		?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	T	I	A	P	N	L	L	K	E	L	Q	E	K	V	S	P	V	V	R	K	L	I	P	P	S	Q	T	F	P	R	P	A	P	M	S	E	A	E	F	R	W	E	H	N	Q	D	A	M	A	V	E	K	L	S	E	G	I	R	L
Secondary structure
SS confidence
Disorder															?			?	?	?	?	?			?	?	?		?		?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Sequence		F	A	V	D	Q	R	K	L	E	D	L	L	A	A	K	L
Secondary structure
SS confidence
Disorder																?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1onr chain A Region: 2 - 316 Aligned: 315 Modelled: 315 Confidence: 100.0% Identity: 64% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class I aldolase Phyre2 PDB 2e1d chain A domain 1 Region: 3 - 316 Aligned: 314 Modelled: 314 Confidence: 100.0% Identity: 60% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class I aldolase Phyre2 PDB 1f05 chain A Region: 3 - 316 Aligned: 314 Modelled: 314 Confidence: 100.0% Identity: 60% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class I aldolase Phyre2 PDB 3m16 chain A Region: 2 - 316 Aligned: 315 Modelled: 315 Confidence: 100.0% Identity: 57% PDB header:transferase Chain: A: PDB Molecule:transaldolase; PDBTitle: structure of a transaldolase from oleispira antarctica Phyre2 PDB 3igx chain A Region: 2 - 316 Aligned: 315 Modelled: 315 Confidence: 100.0% Identity: 48% PDB header:transferase Chain: A: PDB Molecule:transaldolase; PDBTitle: 1.85 angstrom resolution crystal structure of transaldolase b (tala)2 from francisella tularensis. Phyre2 PDB 3hjz chain A Region: 2 - 316 Aligned: 315 Modelled: 315 Confidence: 100.0% Identity: 51% PDB header:transferase Chain: A: PDB Molecule:transaldolase b; PDBTitle: the structure of an aldolase from prochlorococcus marinus Phyre2 PDB 3cq0 chain B Region: 3 - 316 Aligned: 308 Modelled: 314 Confidence: 100.0% Identity: 55% PDB header:transferase Chain: B: PDB Molecule:putative transaldolase ygr043c; PDBTitle: crystal structure of tal2_yeast Phyre2 PDB 3clm chain A Region: 4 - 312 Aligned: 293 Modelled: 309 Confidence: 100.0% Identity: 26% PDB header:lyase Chain: A: PDB Molecule:transaldolase; PDBTitle: crystal structure of transaldolase (yp_208650.1) from neisseria2 gonorrhoeae fa 1090 at 1.14 a resolution Phyre2 PDB 3s1v chain D Region: 12 - 308 Aligned: 207 Modelled: 210 Confidence: 100.0% Identity: 40% PDB header:transferase Chain: D: PDB Molecule:probable transaldolase; PDBTitle: transaldolase from thermoplasma acidophilum in complex with d-fructose2 6-phosphate schiff-base intermediate Phyre2 PDB 1vpx chain A Region: 11 - 310 Aligned: 197 Modelled: 207 Confidence: 100.0% Identity: 37% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class I aldolase Phyre2 PDB 1l6w chain A Region: 11 - 308 Aligned: 208 Modelled: 220 Confidence: 100.0% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class I aldolase Phyre2 PDB 1wx0 chain A domain 1 Region: 12 - 257 Aligned: 200 Modelled: 203 Confidence: 100.0% Identity: 34% Fold: TIM beta/alpha-barrel Superfamily: Aldolase Family: Class I aldolase Phyre2 PDB 1xm3 chain A Region: 133 - 249 Aligned: 101 Modelled: 102 Confidence: 94.6% Identity: 20% Fold: TIM beta/alpha-barrel Superfamily: ThiG-like Family: ThiG-like Phyre2 PDB 2htm chain B Region: 132 - 248 Aligned: 102 Modelled: 102 Confidence: 90.9% Identity: 18% PDB header:biosynthetic protein Chain: B: PDB Molecule:thiazole biosynthesis protein thig; PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8 Phyre2 PDB 2p10 chain D Region: 139 - 223 Aligned: 72 Modelled: 85 Confidence: 87.2% Identity: 18% PDB header:hydrolase Chain: D: PDB Molecule:mll9387 protein; PDBTitle: crystal structure of a putative phosphonopyruvate hydrolase (mll9387)2 from mesorhizobium loti maff303099 at 2.15 a resolution Phyre2 PDB 1o4u chain A Region: 133 - 244 Aligned: 90 Modelled: 96 Confidence: 83.2% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:type ii quinolic acid phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate nucleotide pyrophosphorylase2 (tm1645) from thermotoga maritima at 2.50 a resolution Phyre2 PDB 2p10 chain A domain 1 Region: 139 - 179 Aligned: 40 Modelled: 41 Confidence: 82.6% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: Phosphoenolpyruvate/pyruvate domain Family: Mll9387-like Phyre2 PDB 1o4u chain A domain 1 Region: 113 - 244 Aligned: 110 Modelled: 111 Confidence: 77.1% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like Family: NadC C-terminal domain-like Phyre2 PDB 2jbm chain A Region: 137 - 244 Aligned: 86 Modelled: 92 Confidence: 76.8% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: qprtase structure from human Phyre2 PDB 1ofa chain B Region: 81 - 176 Aligned: 89 Modelled: 96 Confidence: 74.3% Identity: 24% PDB header:lyase Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase; PDBTitle: crystal structure of the tyrosine-regulated2 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase3 from saccharomyces cerevisiae in complex with4 phosphoenolpyruvate and cobalt(ii) Phyre2 1 d1onra_ 2 d2e1da1 3 d1f05a_ 4 c3m16A_ 5 c3igxA_ 6 c3hjzA_ 7 c3cq0B_ 8 c3clmA_ 9 c3s1vD_ 10 d1vpxa_ 11 d1l6wa_ 12 d1wx0a1 13 d1xm3a_ 14 c2htmB_ 15 c2p10D_ 16 c1o4uA_ 17 d2p10a1 18 d1o4ua1 19 c2jbmA_ 20 c1ofaB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1onra_ 100.0 64 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 2 d2e1da1 100.0 60 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 3 d1f05a_ 100.0 60 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 4 c3m16A_ 100.0 57 PDB header:transferase Chain: A: PDB Molecule:transaldolase; PDBTitle: structure of a transaldolase from oleispira antarctica 5 c3igxA_ 100.0 48 PDB header:transferase Chain: A: PDB Molecule:transaldolase; PDBTitle: 1.85 angstrom resolution crystal structure of transaldolase b (tala)2 from francisella tularensis. 6 c3hjzA_ 100.0 51 PDB header:transferase Chain: A: PDB Molecule:transaldolase b; PDBTitle: the structure of an aldolase from prochlorococcus marinus 7 c3cq0B_ 100.0 55 PDB header:transferase Chain: B: PDB Molecule:putative transaldolase ygr043c; PDBTitle: crystal structure of tal2_yeast 8 c3clmA_ 100.0 26 PDB header:lyase Chain: A: PDB Molecule:transaldolase; PDBTitle: crystal structure of transaldolase (yp_208650.1) from neisseria2 gonorrhoeae fa 1090 at 1.14 a resolution 9 c3s1vD_ 100.0 40 PDB header:transferase Chain: D: PDB Molecule:probable transaldolase; PDBTitle: transaldolase from thermoplasma acidophilum in complex with d-fructose2 6-phosphate schiff-base intermediate 10 d1vpxa_ 100.0 37 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 11 d1l6wa_ 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 12 d1wx0a1 100.0 34 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 13 d1xm3a_ 94.6 20 Fold:TIM beta/alpha-barrel Superfamily:ThiG-like Family:ThiG-like 14 c2htmB_ 90.9 18 PDB header:biosynthetic protein Chain: B: PDB Molecule:thiazole biosynthesis protein thig; PDBTitle: crystal structure of ttha0676 from thermus thermophilus hb8 15 c2p10D_ 87.2 18 PDB header:hydrolase Chain: D: PDB Molecule:mll9387 protein; PDBTitle: crystal structure of a putative phosphonopyruvate hydrolase (mll9387)2 from mesorhizobium loti maff303099 at 2.15 a resolution 16 c1o4uA_ 83.2 17 PDB header:transferase Chain: A: PDB Molecule:type ii quinolic acid phosphoribosyltransferase; PDBTitle: crystal structure of a nicotinate nucleotide pyrophosphorylase2 (tm1645) from thermotoga maritima at 2.50 a resolution 17 d2p10a1 82.6 25 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Mll9387-like 18 d1o4ua1 77.1 15 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 19 c2jbmA_ 76.8 19 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: qprtase structure from human 20 c1ofaB_ 74.3 24 PDB header:lyase Chain: B: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase; PDBTitle: crystal structure of the tyrosine-regulated2 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase3 from saccharomyces cerevisiae in complex with4 phosphoenolpyruvate and cobalt(ii) 21 d1cjca2 not modelled 67.2 19 Fold:Nucleotide-binding domain Superfamily:Nucleotide-binding domain Family:N-terminal domain of adrenodoxin reductase-like 22 d1wa3a1 not modelled 62.8 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 23 d1of8a_ not modelled 61.6 24 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 24 d1m5wa_ not modelled 60.8 17 Fold:TIM beta/alpha-barrel Superfamily:Pyridoxine 5'-phosphate synthase Family:Pyridoxine 5'-phosphate synthase 25 c3labA_ not modelled 58.0 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative kdpg (2-keto-3-deoxy-6-phosphogluconate) PDBTitle: crystal structure of a putative kdpg (2-keto-3-deoxy-6-2 phosphogluconate) aldolase from oleispira antarctica 26 c3o6cA_ not modelled 57.0 14 PDB header:transferase Chain: A: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: pyridoxal phosphate biosynthetic protein pdxj from campylobacter2 jejuni 27 c2yw3E_ not modelled 54.0 30 PDB header:lyase Chain: E: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- PDBTitle: crystal structure analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-2 deydro-3-deoxyphosphogluconate aldolase from tthb1 28 d1vc4a_ not modelled 51.6 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 29 c3gk0H_ not modelled 50.3 19 PDB header:transferase Chain: H: PDB Molecule:pyridoxine 5'-phosphate synthase; PDBTitle: crystal structure of pyridoxal phosphate biosynthetic2 protein from burkholderia pseudomallei 30 d1o66a_ not modelled 49.1 22 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 31 c1qpoA_ not modelled 48.2 13 PDB header:transferase Chain: A: PDB Molecule:quinolinate acid phosphoribosyl transferase; PDBTitle: quinolinate phosphoribosyl transferase (qaprtase) apo-enzyme from2 mycobacterium tuberculosis 32 c1cjcA_ not modelled 48.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:protein (adrenodoxin reductase); PDBTitle: structure of adrenodoxin reductase of mitochondrial p4502 systems 33 c1x1oC_ not modelled 46.3 17 PDB header:transferase Chain: C: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of project id tt0268 from thermus thermophilus hb8 34 c3sz8D_ not modelled 44.5 13 PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 2; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia pseudomallei 35 d1nkua_ not modelled 44.1 25 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase I (Tag) 36 c1ps9A_ not modelled 43.6 26 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 37 c3ez4B_ not modelled 43.0 19 PDB header:transferase Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase; PDBTitle: crystal structure of 3-methyl-2-oxobutanoate2 hydroxymethyltransferase from burkholderia pseudomallei 38 c2b7pA_ not modelled 40.3 18 PDB header:transferase Chain: A: PDB Molecule:probable nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of quinolinic acid phosphoribosyltransferase from2 helicobacter pylori 39 c3pajA_ not modelled 39.6 15 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase, carboxylating; PDBTitle: 2.00 angstrom resolution crystal structure of a quinolinate2 phosphoribosyltransferase from vibrio cholerae o1 biovar eltor str.3 n16961 40 d1vhca_ not modelled 39.5 9 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 41 d1mxsa_ not modelled 39.3 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 42 c3ef6A_ not modelled 39.1 23 PDB header:oxidoreductase Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin--nad(+) PDBTitle: crystal structure of toluene 2,3-dioxygenase reductase 43 c2v3aA_ not modelled 38.6 19 PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin reductase; PDBTitle: crystal structure of rubredoxin reductase from pseudomonas2 aeruginosa. 44 d1qpoa1 not modelled 37.8 13 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 45 d1wbha1 not modelled 37.1 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 46 c3llvA_ not modelled 36.0 10 PDB header:nad(p) binding protein Chain: A: PDB Molecule:exopolyphosphatase-related protein; PDBTitle: the crystal structure of the nad(p)-binding domain of an2 exopolyphosphatase-related protein from archaeoglobus fulgidus to3 1.7a 47 c3ffsC_ not modelled 33.9 16 PDB header:oxidoreductase Chain: C: PDB Molecule:inosine-5-monophosphate dehydrogenase; PDBTitle: the crystal structure of cryptosporidium parvum inosine-5'-2 monophosphate dehydrogenase 48 d1f61a_ not modelled 33.9 17 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 49 c2gr2A_ not modelled 32.7 19 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin reductase; PDBTitle: crystal structure of ferredoxin reductase, bpha4 (oxidized form) 50 d1itza3 not modelled 30.9 30 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Transketolase C-terminal domain-like 51 c2jg6A_ not modelled 30.8 18 PDB header:hydrolase Chain: A: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i2 from staphylococcus aureus 52 d1bd3a_ not modelled 29.4 12 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 53 c3lxdA_ not modelled 28.9 21 PDB header:oxidoreductase Chain: A: PDB Molecule:fad-dependent pyridine nucleotide-disulphide PDBTitle: crystal structure of ferredoxin reductase arr from novosphingobium2 aromaticivorans 54 d1pv8a_ not modelled 27.7 24 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) 55 c1yqzA_ not modelled 27.2 10 PDB header:oxidoreductase Chain: A: PDB Molecule:coenzyme a disulfide reductase; PDBTitle: structure of coenzyme a-disulfide reductase from2 staphylococcus aureus refined at 1.54 angstrom resolution 56 c3t4cD_ not modelled 26.0 18 PDB header:transferase Chain: D: PDB Molecule:2-dehydro-3-deoxyphosphooctonate aldolase 1; PDBTitle: crystal structure of 2-dehydro-3-deoxyphosphooctonate aldolase from2 burkholderia ambifaria 57 c1kbiB_ not modelled 25.6 17 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome b2; PDBTitle: crystallographic study of the recombinant flavin-binding domain of2 baker's yeast flavocytochrome b2: comparison with the intact wild-3 type enzyme 58 d1j5ta_ not modelled 25.3 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 59 c3l0gD_ not modelled 25.3 19 PDB header:transferase Chain: D: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide pyrophosphorylase from2 ehrlichia chaffeensis at 2.05a resolution 60 d1wv2a_ not modelled 24.8 19 Fold:TIM beta/alpha-barrel Superfamily:ThiG-like Family:ThiG-like 61 d1kbia1 not modelled 24.5 18 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 62 c1q1wA_ not modelled 24.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:putidaredoxin reductase; PDBTitle: crystal structure of putidaredoxin reductase from2 pseudomonas putida 63 d1n8fa_ not modelled 23.9 22 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 64 c2p0iA_ not modelled 23.3 16 PDB header:lyase Chain: A: PDB Molecule:l-rhamnonate dehydratase; PDBTitle: crystal structure of l-rhamnonate dehydratase from gibberella zeae 65 c1zcoA_ not modelled 22.9 15 PDB header:lyase Chain: A: PDB Molecule:2-dehydro-3-deoxyphosphoheptonate aldolase; PDBTitle: crystal structure of pyrococcus furiosus 3-deoxy-d-arabino-2 heptulosonate 7-phosphate synthase 66 c3hyxC_ not modelled 22.9 19 PDB header:oxidoreductase Chain: C: PDB Molecule:sulfide-quinone reductase; PDBTitle: 3-d x-ray structure of the sulfide:quinone oxidoreductase from aquifex2 aeolicus in complex with aurachin c 67 d1d9ea_ not modelled 22.1 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 68 c3fg2P_ not modelled 22.1 19 PDB header:oxidoreductase Chain: P: PDB Molecule:putative rubredoxin reductase; PDBTitle: crystal structure of ferredoxin reductase for the cyp199a2 system from2 rhodopseudomonas palustris 69 d2dw4a2 not modelled 21.6 27 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 70 d1b5qa1 not modelled 21.3 29 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD-linked reductases, N-terminal domain 71 d1nu5a1 not modelled 20.8 17 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 72 c2hxtA_ not modelled 20.4 15 PDB header:unknown function Chain: A: PDB Molecule:l-fuconate dehydratase; PDBTitle: crystal structure of l-fuconate dehydratase from xanthomonas2 campestris liganded with mg++ and d-erythronohydroxamate 73 d1iyna_ not modelled 20.4 20 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:CCP-like 74 c2h2wA_ not modelled 19.6 38 PDB header:transferase Chain: A: PDB Molecule:homoserine o-succinyltransferase; PDBTitle: crystal structure of homoserine o-succinyltransferase (ec 2.3.1.46)2 (homoserine o-transsuccinylase) (hts) (tm0881) from thermotoga3 maritima at 2.52 a resolution 75 c3tqkA_ not modelled 19.6 28 PDB header:transferase Chain: A: PDB Molecule:phospho-2-dehydro-3-deoxyheptonate aldolase; PDBTitle: structure of phospho-2-dehydro-3-deoxyheptonate aldolase from2 francisella tularensis schu s4 76 d1nhpa2 not modelled 19.5 24 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 77 c3bw2A_ not modelled 19.5 15 PDB header:oxidoreductase Chain: A: PDB Molecule:2-nitropropane dioxygenase; PDBTitle: crystal structures and site-directed mutagenesis study of nitroalkane2 oxidase from streptomyces ansochromogenes 78 d1eepa_ not modelled 19.0 10 Fold:TIM beta/alpha-barrel Superfamily:Inosine monophosphate dehydrogenase (IMPDH) Family:Inosine monophosphate dehydrogenase (IMPDH) 79 d1oy0a_ not modelled 18.8 24 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 80 d1d7ya2 not modelled 18.7 26 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 81 c3dmpD_ not modelled 18.3 14 PDB header:transferase Chain: D: PDB Molecule:uracil phosphoribosyltransferase; PDBTitle: 2.6 a crystal structure of uracil phosphoribosyltransferase2 from burkholderia pseudomallei 82 c3ktcB_ not modelled 17.9 15 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution 83 c3gnnA_ not modelled 17.3 14 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide2 pyrophosphorylase from burkholderi pseudomallei 84 d2flia1 not modelled 17.2 16 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 85 c3noyA_ not modelled 16.4 14 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: crystal structure of ispg (gcpe) 86 c2bt7A_ not modelled 16.1 29 PDB header:viral protein Chain: A: PDB Molecule:sigma c; PDBTitle: structure of the c-terminal receptor-binding domain of2 avian reovirus fibre sigmac, cd crystal form 87 d1qapa1 not modelled 16.1 15 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 88 c3dg7B_ not modelled 15.7 10 PDB header:isomerase Chain: B: PDB Molecule:muconate cycloisomerase; PDBTitle: crystal structure of muconate lactonizing enzyme from mucobacterium2 smegmatis complexed with muconolactone 89 c3rcyC_ not modelled 15.6 14 PDB header:isomerase Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme-like PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme-2 like protein from roseovarius sp. tm1035 90 c2v82A_ not modelled 15.1 13 PDB header:lyase Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase; PDBTitle: kdpgal complexed to kdpgal 91 d1o5oa_ not modelled 15.1 16 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 92 c2v5jB_ not modelled 14.7 17 PDB header:lyase Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PDBTitle: apo class ii aldolase hpch 93 d2csua3 not modelled 14.5 20 Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains 94 c2oz3F_ not modelled 14.5 21 PDB header:lyase Chain: F: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of l-rhamnonate dehydratase from azotobacter2 vinelandii 95 d1o60a_ not modelled 14.4 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 96 c2zv3E_ not modelled 14.4 18 PDB header:hydrolase Chain: E: PDB Molecule:peptidyl-trna hydrolase; PDBTitle: crystal structure of project mj0051 from methanocaldococcus2 jannaschii dsm 2661 97 c1zfjA_ not modelled 14.3 16 PDB header:oxidoreductase Chain: A: PDB Molecule:inosine monophosphate dehydrogenase; PDBTitle: inosine monophosphate dehydrogenase (impdh; ec 1.1.1.205) from2 streptococcus pyogenes 98 d1a9xa3 not modelled 14.3 29 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 99 d1vkfa_ not modelled 14.3 18 Fold:TIM beta/alpha-barrel Superfamily:GlpP-like Family:GlpP-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0