09/01/2012 01:25:30 : INFO  : Run start: Mon Jan  9 01:25:29 GMT 2012
09/01/2012 01:25:37 : INFO  : Initialised job
09/01/2012 01:25:40 : INFO  : Renaming log file 'phyre2_20120109_012527.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/0f76df8d86d653b5/phyre_20120109_012527.log'
09/01/2012 01:25:41 : INFO  : Initialised job:
Sequence
>batch____
MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI
IIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANE
LMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII
EHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGEDFR
L

09/01/2012 01:25:43 : INFO  : Checked sequence
09/01/2012 01:25:48 : INFO  : Finding homologues with PSI-BLAST
09/01/2012 01:25:50 : INFO  : PSI-BLAST 3 iterations
09/01/2012 01:28:09 : INFO  : PSI-BLAST 5 iterations
09/01/2012 01:31:43 : INFO  : Finished PSI-BLAST
09/01/2012 01:31:45 : INFO  : Running Buildali to generate a3m file
09/01/2012 03:04:50 : INFO  : Converting to HMM
09/01/2012 03:05:05 : INFO  : Calibrating HMM
09/01/2012 03:05:21 : INFO  : Searching HMM database
09/01/2012 03:09:35 : INFO  : Finished buildali
09/01/2012 03:09:37 : INFO  : Predicting secondary structure
09/01/2012 03:09:50 : INFO  : Predicted secondary structure (PSI-Pred)
09/01/2012 03:09:52 : INFO  : Predicting Disordered regions
09/01/2012 03:09:57 : INFO  : Predicted Disorder (Disopred)
09/01/2012 03:09:59 : INFO  : Running memsat_svm check
09/01/2012 03:14:15 : INFO  : Globular protein
09/01/2012 03:14:16 : INFO  : Predicted Transmembrane (memsat_svm) ID '0f76df8d86d653b5'
09/01/2012 03:14:18 : INFO  : Initialising fold library search
09/01/2012 03:14:23 : INFO  : Initialised search input
09/01/2012 03:14:26 : INFO  : Building Ensemble models
09/01/2012 03:14:30 : INFO  : Building hh.c2olkD_.model.1.pdb
09/01/2012 03:14:49 : INFO  : Building hh.c2yyzA_.model.2.pdb
09/01/2012 03:15:02 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0f76df8d86d653b5/hh.c2yyzA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0f76df8d86d653b5/c2yyzA_.2.pdb
09/01/2012 03:15:07 : INFO  : Building hh.d1g2912.model.3.pdb
09/01/2012 03:15:25 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0f76df8d86d653b5/hh.d1g2912.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0f76df8d86d653b5/d1g2912.3.pdb
09/01/2012 03:15:30 : INFO  : Building hh.c2it1B_.model.4.pdb
09/01/2012 03:15:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0f76df8d86d653b5/hh.c2it1B_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0f76df8d86d653b5/c2it1B_.4.pdb
09/01/2012 03:15:51 : INFO  : Building hh.d1g6ha_.model.5.pdb
09/01/2012 03:16:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0f76df8d86d653b5/hh.d1g6ha_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0f76df8d86d653b5/d1g6ha_.5.pdb
09/01/2012 03:16:11 : INFO  : Building hh.d1oxxk2.model.6.pdb
09/01/2012 03:16:26 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0f76df8d86d653b5/hh.d1oxxk2.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0f76df8d86d653b5/d1oxxk2.6.pdb
09/01/2012 03:16:31 : INFO  : Building c2olkD_.1.pdb
09/01/2012 03:16:51 : INFO  : Building c2yyzA_.2.pdb
09/01/2012 03:17:11 : INFO  : Building d1g2912.3.pdb
09/01/2012 03:17:33 : INFO  : Building c2it1B_.4.pdb
09/01/2012 03:17:56 : INFO  : Building d1g6ha_.5.pdb
09/01/2012 03:18:18 : INFO  : Building d1oxxk2.6.pdb
09/01/2012 03:18:40 : INFO  : Building c1oxtB_.7.pdb
09/01/2012 03:19:03 : INFO  : Building c3fvqB_.8.pdb
09/01/2012 03:19:23 : INFO  : Building d1ji0a_.9.pdb
09/01/2012 03:19:46 : INFO  : Building d3dhwc1.10.pdb
09/01/2012 03:20:07 : INFO  : Building c1z47B_.11.pdb
09/01/2012 03:20:29 : INFO  : Building d1vpla_.12.pdb
09/01/2012 03:20:49 : INFO  : Building c1vciA_.13.pdb
09/01/2012 03:21:10 : INFO  : Building d1b0ua_.14.pdb
09/01/2012 03:21:31 : INFO  : Building c3dhwC_.15.pdb
09/01/2012 03:21:53 : INFO  : Building d1v43a3.16.pdb
09/01/2012 03:22:13 : INFO  : Building c3gfoA_.17.pdb
09/01/2012 03:22:35 : INFO  : Building c1q1bD_.18.pdb
09/01/2012 03:22:56 : INFO  : Building c2d62A_.19.pdb
09/01/2012 03:23:18 : INFO  : Building d3d31a2.20.pdb
09/01/2012 03:25:56 : INFO  : Finished HH model building
09/01/2012 03:25:58 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
09/01/2012 03:27:17 : INFO  : html domain output complete ID '0f76df8d86d653b5'
09/01/2012 04:07:35 : INFO  : Run end  : Mon Jan  9 04:07:33 GMT 2012
