Phyre 2 Results for P0A9V1

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Email | l.a.kelley@imperial.ac.uk
Description | P0A9V1
Date | Thu Jan 5 11:11:27 GMT 2012
Unique Job ID | 0f76df8d86d653b5

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c2olkD_
Top template information
PDB header:hydrolase Chain: D: PDB Molecule:amino acid abc transporter; PDBTitle: abc protein artp in complex with adp-beta-s
Confidence and coverage
Confidence: | 100.0% | Coverage: | 99%
239 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | T | L | T | A | K | N | L | A | K | A | Y | K | G | R | R | V | V | E | D | V | S | L | T | V | N | S | G | E | I | V | G | L | L | G | P | N | G | A | G | K | T | T | T | F | Y | M | V | V | G | I | V | P | R | D | A | G | N | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | I | I | D | D | D | D | I | S | L | L | P | L | H | A | R | A | R | R | G | I | G | Y | L | P | Q | E | A | S | I | F | R | R | L | S | V | Y | D | N | L | M | A | V | L | Q | I | R | D | D | L | S | A | E | Q | R | E | D | R | A | N | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | M | E | E | F | H | I | E | H | L | R | D | S | M | G | Q | S | L | S | G | G | E | R | R | R | V | E | I | A | R | A | L | A | A | N | P | K | F | I | L | L | D | E | P | F | A | G | V | D | P | I | S | V | I | D | I | K | R | I | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | E | H | L | R | D | S | G | L | G | V | L | I | T | D | H | N | V | R | E | T | L | A | V | C | E | R | A | Y | I | V | S | Q | G | H | L | I | A | H | G | T | P | T | E | I | L | Q | D | E | H | V | K | R | V | Y | L | G | E | D | F | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | .
Sequence |  | L
Secondary structure |  |
SS confidence |  |
Disorder |  | ?
Disorder confidence |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2olkD_ |

### PDB 2olk chain D

Region: 1 - 239
Aligned: 239
Modelled: 239
Confidence: 100.0%
Identity: 26%
PDB header:hydrolase
Chain: D: PDB Molecule:amino acid abc transporter;
PDBTitle: abc protein artp in complex with adp-beta-s

Phyre2
2 |
| c2yyzA_ |

### PDB 2yyz chain A

Region: 2 - 229
Aligned: 224
Modelled: 228
Confidence: 100.0%
Identity: 33%
PDB header:transport protein
Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein;
PDBTitle: crystal structure of sugar abc transporter, atp-binding protein

Phyre2
3 |
| d1g2912 |

### PDB 1g29 chain 1 domain 2

Region: 1 - 228
Aligned: 227
Modelled: 228
Confidence: 100.0%
Identity: 28%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2
4 |
| c2it1B_ |

### PDB 2it1 chain B

Region: 3 - 237
Aligned: 231
Modelled: 235
Confidence: 100.0%
Identity: 30%
PDB header:transport protein
Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin
PDBTitle: structure of ph0203 protein from pyrococcus horikoshii

Phyre2
5 |
| d1g6ha_ |

### PDB 1g6h chain A

Region: 1 - 237
Aligned: 237
Modelled: 237
Confidence: 100.0%
Identity: 31%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2
6 |
| d1oxxk2 |

### PDB 1oxx chain K domain 2

Region: 1 - 236
Aligned: 235
Modelled: 236
Confidence: 100.0%
Identity: 26%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2
7 |
| c1oxtB_ |

### PDB 1oxt chain B

Region: 1 - 241
Aligned: 240
Modelled: 241
Confidence: 100.0%
Identity: 27%
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, atp binding protein;
PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus

Phyre2
8 |
| c3fvqB_ |

### PDB 3fvq chain B

Region: 2 - 229
Aligned: 227
Modelled: 228
Confidence: 100.0%
Identity: 31%
PDB header:hydrolase
Chain: B: PDB Molecule:fe(3+) ions import atp-binding protein fbpc;
PDBTitle: crystal structure of the nucleotide binding domain fbpc2 complexed with atp

Phyre2
9 |
| d1ji0a_ |

### PDB 1ji0 chain A

Region: 1 - 236
Aligned: 235
Modelled: 236
Confidence: 100.0%
Identity: 32%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2
10 |
| d3dhwc1 |

### PDB 3dhw chain C domain 1

Region: 3 - 229
Aligned: 226
Modelled: 227
Confidence: 100.0%
Identity: 30%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2
11 |
| c1z47B_ |

### PDB 1z47 chain B

Region: 3 - 228
Aligned: 222
Modelled: 226
Confidence: 100.0%
Identity: 31%
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative abc-transporter atp-binding protein;
PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius

Phyre2
12 |
| d1vpla_ |

### PDB 1vpl chain A

Region: 3 - 234
Aligned: 229
Modelled: 232
Confidence: 100.0%
Identity: 28%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2
13 |
| c1vciA_ |

### PDB 1vci chain A

Region: 1 - 229
Aligned: 217
Modelled: 229
Confidence: 100.0%
Identity: 30%
PDB header:transport protein
Chain: A: PDB Molecule:sugar-binding transport atp-binding protein;
PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp

Phyre2
14 |
| d1b0ua_ |

### PDB 1b0u chain A

Region: 2 - 229
Aligned: 228
Modelled: 228
Confidence: 100.0%
Identity: 26%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2
15 |
| c3dhwC_ |

### PDB 3dhw chain C

Region: 3 - 229
Aligned: 226
Modelled: 227
Confidence: 100.0%
Identity: 30%
PDB header:membrane protein/hydrolase
Chain: C: PDB Molecule:methionine import atp-binding protein metn;
PDBTitle: crystal structure of methionine importer metni

Phyre2
16 |
| d1v43a3 |

### PDB 1v43 chain A domain 3

Region: 1 - 237
Aligned: 225
Modelled: 237
Confidence: 100.0%
Identity: 30%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2
17 |
| c3gfoA_ |

### PDB 3gfo chain A

Region: 2 - 234
Aligned: 232
Modelled: 233
Confidence: 100.0%
Identity: 28%
PDB header:atp binding protein
Chain: A: PDB Molecule:cobalt import atp-binding protein cbio 1;
PDBTitle: structure of cbio1 from clostridium perfringens: part of2 the abc transporter complex cbionq.

Phyre2
18 |
| c1q1bD_ |

### PDB 1q1b chain D

Region: 4 - 229
Aligned: 222
Modelled: 226
Confidence: 100.0%
Identity: 29%
PDB header:transport protein
Chain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk;
PDBTitle: crystal structure of e. coli malk in the nucleotide-free form

Phyre2
19 |
| c2d62A_ |

### PDB 2d62 chain A

Region: 2 - 229
Aligned: 227
Modelled: 228
Confidence: 100.0%
Identity: 28%
PDB header:sugar binding protein
Chain: A: PDB Molecule:multiple sugar-binding transport atp-binding
PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein

Phyre2
20 |
| d3d31a2 |

### PDB 3d31 chain A domain 2

Region: 3 - 236
Aligned: 226
Modelled: 234
Confidence: 100.0%
Identity: 33%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: ABC transporter ATPase domain-like

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2olkD_ |
|  | 100.0 | 26 | PDB header:hydrolase Chain: D: PDB Molecule:amino acid abc transporter; PDBTitle: abc protein artp in complex with adp-beta-s
2 | c2yyzA_ |
|  | 100.0 | 33 | PDB header:transport protein Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein
3 | d1g2912 |
|  | 100.0 | 28 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
4 | c2it1B_ |
|  | 100.0 | 30 | PDB header:transport protein Chain: B: PDB Molecule:362aa long hypothetical maltose/maltodextrin PDBTitle: structure of ph0203 protein from pyrococcus horikoshii
5 | d1g6ha_ |
|  | 100.0 | 31 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
6 | d1oxxk2 |
|  | 100.0 | 26 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
7 | c1oxtB_ |
|  | 100.0 | 27 | PDB header:transport protein Chain: B: PDB Molecule:abc transporter, atp binding protein; PDBTitle: crystal structure of glcv, the abc-atpase of the glucose abc2 transporter from sulfolobus solfataricus
8 | c3fvqB_ |
|  | 100.0 | 31 | PDB header:hydrolase Chain: B: PDB Molecule:fe(3+) ions import atp-binding protein fbpc; PDBTitle: crystal structure of the nucleotide binding domain fbpc2 complexed with atp
9 | d1ji0a_ |
|  | 100.0 | 32 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
10 | d3dhwc1 |
|  | 100.0 | 30 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
11 | c1z47B_ |
|  | 100.0 | 31 | PDB header:ligand binding protein Chain: B: PDB Molecule:putative abc-transporter atp-binding protein; PDBTitle: structure of the atpase subunit cysa of the putative2 sulfate atp-binding cassette (abc) transporter from3 alicyclobacillus acidocaldarius
12 | d1vpla_ |
|  | 100.0 | 28 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
13 | c1vciA_ |
|  | 100.0 | 30 | PDB header:transport protein Chain: A: PDB Molecule:sugar-binding transport atp-binding protein; PDBTitle: crystal structure of the atp-binding cassette of multisugar2 transporter from pyrococcus horikoshii ot3 complexed with3 atp
14 | d1b0ua_ |
|  | 100.0 | 26 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
15 | c3dhwC_ |
|  | 100.0 | 30 | PDB header:membrane protein/hydrolase Chain: C: PDB Molecule:methionine import atp-binding protein metn; PDBTitle: crystal structure of methionine importer metni
16 | d1v43a3 |
|  | 100.0 | 30 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
17 | c3gfoA_ |
|  | 100.0 | 28 | PDB header:atp binding protein Chain: A: PDB Molecule:cobalt import atp-binding protein cbio 1; PDBTitle: structure of cbio1 from clostridium perfringens: part of2 the abc transporter complex cbionq.
18 | c1q1bD_ |
|  | 100.0 | 29 | PDB header:transport protein Chain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form
19 | c2d62A_ |
|  | 100.0 | 28 | PDB header:sugar binding protein Chain: A: PDB Molecule:multiple sugar-binding transport atp-binding PDBTitle: crystal structure of multiple sugar binding transport atp-2 binding protein
20 | d3d31a2 |
|  | 100.0 | 33 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
21 | c2pcjB_ |
| not modelled | 100.0 | 23 | PDB header:hydrolase Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold; PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5
22 | c2d2fA_ |
| not modelled | 100.0 | 26 | PDB header:protein binding Chain: A: PDB Molecule:sufc protein; PDBTitle: crystal structure of atypical cytoplasmic abc-atpase sufc from thermus2 thermophilus hb8
23 | c3d31B_ |
| not modelled | 100.0 | 33 | PDB header:transport protein Chain: B: PDB Molecule:sulfate/molybdate abc transporter, atp-binding PDBTitle: modbc from methanosarcina acetivorans
24 | c3g5uB_ |
| not modelled | 100.0 | 25 | PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
25 | d2pmka1 |
| not modelled | 100.0 | 25 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
26 | d1mv5a_ |
| not modelled | 100.0 | 25 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
27 | c2yz2B_ |
| not modelled | 100.0 | 25 | PDB header:hydrolase Chain: B: PDB Molecule:putative abc transporter atp-binding protein tm_0222; PDBTitle: crystal structure of the abc transporter in the cobalt transport2 system
28 | d3b60a1 |
| not modelled | 100.0 | 24 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
29 | c2nq2C_ |
| not modelled | 100.0 | 27 | PDB header:metal transport Chain: C: PDB Molecule:hypothetical abc transporter atp-binding protein PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.
30 | d1l2ta_ |
| not modelled | 100.0 | 29 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
31 | d1jj7a_ |
| not modelled | 100.0 | 21 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
32 | c2d3wB_ |
| not modelled | 100.0 | 25 | PDB header:biosynthetic protein Chain: B: PDB Molecule:probable atp-dependent transporter sufc; PDBTitle: crystal structure of escherichia coli sufc, an atpase2 compenent of the suf iron-sulfur cluster assembly machinery
33 | c2hydB_ |
| not modelled | 100.0 | 23 | PDB header:transport protein Chain: B: PDB Molecule:abc transporter homolog; PDBTitle: multidrug abc transporter sav1866
34 | c3nhaA_ |
| not modelled | 100.0 | 24 | PDB header:transport protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 6, mitochondrial; PDBTitle: nucleotide binding domain of human abcb6 (adp mg bound structure)
35 | d2hyda1 |
| not modelled | 100.0 | 22 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
36 | c2yl4A_ |
| not modelled | 100.0 | 30 | PDB header:membrane protein Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10, PDBTitle: structure of the human mitochondrial abc transporter, abcb10
37 | d2onka1 |
| not modelled | 100.0 | 32 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
38 | c2ihyB_ |
| not modelled | 100.0 | 24 | PDB header:hydrolase Chain: B: PDB Molecule:abc transporter, atp-binding protein; PDBTitle: structure of the staphylococcus aureus putative atpase subunit of an2 atp-binding cassette (abc) transporter
39 | c3gd7C_ |
| not modelled | 100.0 | 24 | PDB header:hydrolase Chain: C: PDB Molecule:fusion complex of cystic fibrosis transmembrane PDBTitle: crystal structure of human nbd2 complexed with n6-2 phenylethyl-atp (p-atp)
40 | c2cbzA_ |
| not modelled | 100.0 | 20 | PDB header:transport Chain: A: PDB Molecule:multidrug resistance-associated protein 1; PDBTitle: structure of the human multidrug resistance protein 12 nucleotide binding domain 1
41 | c2pzfB_ |
| not modelled | 100.0 | 23 | PDB header:hydrolase Chain: B: PDB Molecule:cystic fibrosis transmembrane conductance regulator; PDBTitle: minimal human cftr first nucleotide binding domain as a head-to-tail2 dimer with delta f508
42 | c3b5xB_ |
| not modelled | 100.0 | 25 | PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae
43 | c3b5wE_ |
| not modelled | 100.0 | 24 | PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba
44 | d1pf4a1 |
| not modelled | 100.0 | 25 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
45 | d1l7vc_ |
| not modelled | 100.0 | 25 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
46 | c2ghiD_ |
| not modelled | 100.0 | 20 | PDB header:transport protein Chain: D: PDB Molecule:transport protein; PDBTitle: crystal structure of plasmodium yoelii multidrug resistance2 protein 2
47 | d2awna2 |
| not modelled | 100.0 | 28 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
48 | d1xmia_ |
| not modelled | 100.0 | 21 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
49 | c1yqtA_ |
| not modelled | 100.0 | 30 | PDB header:hydrolyase/translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: rnase-l inhibitor
50 | c3ozxA_ |
| not modelled | 100.0 | 25 | PDB header:hydrolase, translation Chain: A: PDB Molecule:rnase l inhibitor; PDBTitle: crystal structure of abce1 of sulfolubus solfataricus (-fes domain)
51 | c2pjzA_ |
| not modelled | 100.0 | 27 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st1066; PDBTitle: the crystal structure of putative cobalt transport atp-2 binding protein (cbio-2), st1066
52 | d1sgwa_ |
| not modelled | 100.0 | 26 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
53 | d1r0wa_ |
| not modelled | 100.0 | 21 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
54 | c3bk7A_ |
| not modelled | 100.0 | 28 | PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii
55 | c2iw3B_ |
| not modelled | 100.0 | 21 | PDB header:translation Chain: B: PDB Molecule:elongation factor 3a; PDBTitle: elongation factor 3 in complex with adp
56 | c2r6fA_ |
| not modelled | 100.0 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:excinuclease abc subunit a; PDBTitle: crystal structure of bacillus stearothermophilus uvra
57 | c2ygrD_ |
| not modelled | 100.0 | 20 | PDB header:hydrolase Chain: D: PDB Molecule:uvrabc system protein a; PDBTitle: mycobacterium tuberculosis uvra
58 | c3pihA_ |
| not modelled | 100.0 | 21 | PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna
59 | c2vf7B_ |
| not modelled | 100.0 | 29 | PDB header:dna-binding protein Chain: B: PDB Molecule:excinuclease abc, subunit a.; PDBTitle: crystal structure of uvra2 from deinococcus radiodurans
60 | d1w1wa_ |
| not modelled | 99.9 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
61 | d1cr2a_ |
| not modelled | 99.9 | 10 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
62 | c3tauB_ |
| not modelled | 99.8 | 15 | PDB header:transferase Chain: B: PDB Molecule:guanylate kinase; PDBTitle: crystal structure of a putative guanylate monophosphaste kinase from2 listeria monocytogenes egd-e
63 | c2j41A_ |
| not modelled | 99.8 | 15 | PDB header:transferase Chain: A: PDB Molecule:guanylate kinase; PDBTitle: crystal structure of staphylococcus aureus guanylate2 monophosphate kinase
64 | c3a4mB_ |
| not modelled | 99.7 | 13 | PDB header:transferase Chain: B: PDB Molecule:l-seryl-trna(sec) kinase; PDBTitle: crystal structure of archaeal o-phosphoseryl-trna(sec)2 kinase
65 | c1xexB_ |
| not modelled | 99.6 | 14 | PDB header:cell cycle Chain: B: PDB Molecule:smc protein; PDBTitle: structural biochemistry of atp-driven dimerization and dna2 stimulated activation of smc atpases.
66 | d1ls1a2 |
| not modelled | 99.6 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
67 | c1f2uD_ |
| not modelled | 99.6 | 23 | PDB header:replication Chain: D: PDB Molecule:rad50 abc-atpase; PDBTitle: crystal structure of rad50 abc-atpase
68 | d2qy9a2 |
| not modelled | 99.6 | 8 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
69 | d1vmaa2 |
| not modelled | 99.5 | 10 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
70 | c2o5vA_ |
| not modelled | 99.5 | 26 | PDB header:replication/recombination Chain: A: PDB Molecule:dna replication and repair protein recf; PDBTitle: recombination mediator recf
71 | c1ii8B_ |
| not modelled | 99.4 | 26 | PDB header:replication Chain: B: PDB Molecule:rad50 abc-atpase; PDBTitle: crystal structure of the p. furiosus rad50 atpase domain
72 | c1u9iA_ |
| not modelled | 99.4 | 10 | PDB header:circadian clock protein Chain: A: PDB Molecule:kaic; PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites
73 | c3lncB_ |
| not modelled | 99.4 | 16 | PDB header:transferase Chain: B: PDB Molecule:guanylate kinase; PDBTitle: crystal structure of guanylate kinase from anaplasma2 phagocytophilum
74 | c3geiB_ |
| not modelled | 99.4 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:trna modification gtpase mnme; PDBTitle: crystal structure of mnme from chlorobium tepidum in complex2 with gcp
75 | d1okkd2 |
| not modelled | 99.4 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
76 | d1ye8a1 |
| not modelled | 99.2 | 11 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
77 | d1e69a_ |
| not modelled | 99.0 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
78 | d1np6a_ |
| not modelled | 99.0 | 11 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
79 | c1q57G_ |
| not modelled | 99.0 | 10 | PDB header:transferase Chain: G: PDB Molecule:dna primase/helicase; PDBTitle: the crystal structure of the bifunctional primase-helicase of2 bacteriophage t7
80 | c2dr3A_ |
| not modelled | 98.9 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0273 protein ph0284; PDBTitle: crystal structure of reca superfamily atpase ph0284 from pyrococcus2 horikoshii ot3
81 | d1qzxa3 |
| not modelled | 98.8 | 12 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
82 | d1ewqa2 |
| not modelled | 98.6 | 27 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
83 | c2w0mA_ |
| not modelled | 98.6 | 16 | PDB header:unknown function Chain: A: PDB Molecule:sso2452; PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2
84 | c2o8bA_ |
| not modelled | 98.6 | 25 | PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna mismatch repair protein msh2; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair
85 | d2i3ba1 |
| not modelled | 98.5 | 12 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
86 | c3thxB_ |
| not modelled | 98.5 | 23 | PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh3; PDBTitle: human mutsbeta complexed with an idl of 3 bases (loop3) and adp
87 | c2o8dB_ |
| not modelled | 98.5 | 26 | PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh6; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g du mispair
88 | d1wb9a2 |
| not modelled | 98.4 | 21 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like
89 | c1wbdA_ |
| not modelled | 98.4 | 22 | PDB header:dna-binding Chain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure of e. coli dna mismatch repair enzyme2 muts, e38q mutant, in complex with a g.t mismatch
90 | d1nlfa_ |
| not modelled | 98.3 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
91 | c1ewqA_ |
| not modelled | 98.3 | 30 | PDB header:replication/dna Chain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure taq muts complexed with a heteroduplex2 dna at 2.2 a resolution
92 | c1ewrA_ |
| not modelled | 98.3 | 26 | PDB header:hydrolase Chain: A: PDB Molecule:dna mismatch repair protein muts; PDBTitle: crystal structure of taq muts
93 | c1wxqA_ |
| not modelled | 98.2 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of gtp binding protein from pyrococcus horikoshii2 ot3
94 | d1tf7a1 |
| not modelled | 98.2 | 9 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
95 | c3bh0A_ |
| not modelled | 98.0 | 14 | PDB header:replication Chain: A: PDB Molecule:dnab-like replicative helicase; PDBTitle: atpase domain of g40p
96 | d1yrba1 |
| not modelled | 98.0 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
97 | c2vyeA_ |
| not modelled | 98.0 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the dnac-ssdna complex
98 | d2i1qa2 |
| not modelled | 97.9 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
99 | d1tf7a2 |
| not modelled | 97.8 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
100 | c3qg5A_ |
| not modelled | 97.8 | 39 | PDB header:hydrolase Chain: A: PDB Molecule:rad50; PDBTitle: the mre11:rad50 complex forms an atp dependent molecular clamp in dna2 double-strand break repair
101 | c1pznG_ |
| not modelled | 97.8 | 11 | PDB header:recombination Chain: G: PDB Molecule:dna repair and recombination protein rad51; PDBTitle: rad51 (rada)
102 | c3qkuB_ |
| not modelled | 97.8 | 25 | PDB header:replication Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: mre11 rad50 binding domain in complex with rad50 and amp-pnp
103 | c1xp8A_ |
| not modelled | 97.7 | 20 | PDB header:dna binding protein Chain: A: PDB Molecule:reca protein; PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
104 | d1xp8a1 |
| not modelled | 97.7 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
105 | c2recB_ |
| not modelled | 97.7 | 18 | PDB header:helicase PDB COMPND:
106 | c3auyB_ |
| not modelled | 97.7 | 25 | PDB header:recombination Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: crystal structure of rad50 bound to adp
107 | c2q6tB_ |
| not modelled | 97.6 | 13 | PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer
108 | d1mo6a1 |
| not modelled | 97.6 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
109 | c2ztsB_ |
| not modelled | 97.6 | 15 | PDB header:atp-binding protein Chain: B: PDB Molecule:putative uncharacterized protein ph0186; PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3
110 | c3bgwD_ |
| not modelled | 97.6 | 13 | PDB header:replication Chain: D: PDB Molecule:dnab-like replicative helicase; PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
111 | d1u94a1 |
| not modelled | 97.5 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
112 | d1n0wa_ |
| not modelled | 97.4 | 21 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
113 | d1zp6a1 |
| not modelled | 97.4 | 24 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Atu3015-like
114 | d1v5wa_ |
| not modelled | 97.4 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
115 | c2qthA_ |
| not modelled | 97.4 | 27 | PDB header:nucleotide binding protein Chain: A: PDB Molecule:gtp-binding protein; PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp
116 | d1znwa1 |
| not modelled | 97.3 | 33 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
117 | c1ii8A_ |
| not modelled | 97.3 | 25 | PDB header:replication Chain: A: PDB Molecule:rad50 abc-atpase; PDBTitle: crystal structure of the p. furiosus rad50 atpase domain
118 | c2zroA_ |
| not modelled | 97.3 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:protein reca; PDBTitle: msreca adp form iv
119 | c2kjqA_ |
| not modelled | 97.3 | 20 | PDB header:replication Chain: A: PDB Molecule:dnaa-related protein; PDBTitle: solution structure of protein nmb1076 from neisseria meningitidis.2 northeast structural genomics consortium target mr101b.
120 | d1ubea1 |
| not modelled | 97.3 | 22 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0