BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (419 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B2IAB8 Transcription termination factor Rho n=6 Tax=Bac... 626 e-178 UniRef50_P52156 Transcription termination factor rho n=224 Tax=B... 595 e-169 UniRef50_Q1RIJ6 Transcription termination factor n=863 Tax=cellu... 590 e-167 UniRef50_C8PNN3 Transcription termination factor Rho n=1 Tax=Tre... 540 e-152 UniRef50_O83281 Transcription termination factor rho n=27 Tax=Ba... 516 e-145 UniRef50_D2R072 Transcription termination factor Rho n=1 Tax=Pir... 507 e-142 UniRef50_D1N6X9 Transcription termination factor Rho n=1 Tax=Vic... 503 e-141 UniRef50_D2QLY9 Transcription termination factor Rho n=2 Tax=Fle... 494 e-138 UniRef50_A6DIN5 Transcription termination factor Rho n=2 Tax=Chl... 493 e-138 UniRef50_D1CBT1 Transcription termination factor Rho n=9 Tax=Bac... 487 e-136 UniRef50_Q9ZLS9 Transcription termination factor rho n=117 Tax=B... 486 e-136 UniRef50_D0MEG0 Transcription termination factor Rho n=1 Tax=Rho... 479 e-133 UniRef50_B1I6H8 Transcription termination factor Rho n=6 Tax=Bac... 472 e-132 UniRef50_C7PLF9 Transcription termination factor Rho n=1 Tax=Chi... 467 e-130 UniRef50_D1PY04 Transcription termination factor Rho n=1 Tax=Pre... 462 e-129 UniRef50_C5CGH1 Transcription termination factor Rho n=1 Tax=Kos... 460 e-128 UniRef50_Q7UGV0 Probable transcription termination factor n=1 Ta... 459 e-128 UniRef50_D1P9V5 Transcription termination factor Rho n=1 Tax=Pre... 457 e-127 UniRef50_A9BEQ5 Transcription termination factor Rho n=3 Tax=Bac... 456 e-127 UniRef50_P52157 Transcription termination factor rho n=260 Tax=c... 444 e-123 UniRef50_C2MD13 Transcription termination factor Rho n=1 Tax=Por... 439 e-122 UniRef50_D1VSG2 Transcription termination factor Rho n=1 Tax=Pep... 438 e-121 UniRef50_Q1AVG2 Transcription termination factor Rho n=1 Tax=Rub... 438 e-121 UniRef50_B1R2H4 Transcription termination factor Rho n=3 Tax=Clo... 435 e-120 UniRef50_C9XS91 Transcription termination factor Rho n=16 Tax=Ba... 432 e-119 UniRef50_Q0TNA5 Transcription termination factor Rho n=24 Tax=Ba... 431 e-119 UniRef50_A7BDQ9 Putative uncharacterized protein n=1 Tax=Actinom... 431 e-119 UniRef50_B8DWV6 Transcription termination factor Rho n=4 Tax=Bif... 417 e-115 UniRef50_P52153 Transcription termination factor rho n=16 Tax=Ba... 416 e-114 UniRef50_C9RLJ9 Transcription termination factor Rho n=1 Tax=Fib... 415 e-114 UniRef50_C2CU97 Transcription termination factor Rho n=1 Tax=Gar... 415 e-114 UniRef50_C5RGE3 Transcription termination factor Rho n=1 Tax=Clo... 414 e-114 UniRef50_P45835 Transcription termination factor rho n=20 Tax=Ac... 413 e-114 UniRef50_C7M177 Transcription termination factor Rho n=1 Tax=Aci... 413 e-114 UniRef50_C4GAL5 Putative uncharacterized protein n=2 Tax=Bacteri... 408 e-112 UniRef50_A9KHD0 Transcription termination factor Rho n=13 Tax=Cl... 405 e-111 UniRef50_C2D7C6 Possible transcription termination factor Rho n=... 404 e-111 UniRef50_C7HUP3 Transcription termination factor Rho n=1 Tax=Ana... 397 e-109 UniRef50_C8WA24 Transcription termination factor Rho n=133 Tax=B... 392 e-107 UniRef50_B5JM54 Rho termination factor, RNA-binding domain famil... 391 e-107 UniRef50_B6WAG5 Putative uncharacterized protein n=1 Tax=Anaeroc... 382 e-104 UniRef50_C4G1L0 Putative uncharacterized protein n=1 Tax=Abiotro... 382 e-104 UniRef50_C2KVL4 Transcription termination factor Rho n=1 Tax=Ori... 376 e-102 UniRef50_B1ZZF9 Transcription termination factor Rho n=1 Tax=Opi... 367 e-100 UniRef50_B2UR37 Transcription termination factor Rho n=2 Tax=Ver... 362 2e-98 UniRef50_Q1D9H4 Transcription termination factor Rho n=5 Tax=Myx... 347 4e-94 UniRef50_A5TX87 Transcription termination factor Rho n=11 Tax=Ba... 346 1e-93 UniRef50_Q9FC33 Putative transcription terminator factor n=2 Tax... 338 2e-91 UniRef50_A6CBM4 Transcription termination factor Rho n=3 Tax=Pla... 334 3e-90 UniRef50_C1A5H8 Transcription termination factor n=1 Tax=Gemmati... 333 8e-90 UniRef50_D2QWP2 Transcription termination factor Rho n=3 Tax=Pla... 328 2e-88 UniRef50_B2UQ10 Transcription termination factor Rho n=2 Tax=Bac... 326 1e-87 UniRef50_B4CU50 Transcription termination factor Rho n=3 Tax=Ver... 322 2e-86 UniRef50_C0ACT9 H+transporting two-sector ATPase alpha/beta subu... 314 3e-84 UniRef50_C0QKE9 Rho1 n=1 Tax=Desulfobacterium autotrophicum HRM2... 305 1e-81 UniRef50_B1ZX59 H+transporting two-sector ATPase alpha/beta subu... 304 4e-81 UniRef50_Q2S040 Transcription termination factor rho n=1 Tax=Sal... 298 2e-79 UniRef50_A6VWI3 H+transporting two-sector ATPase alpha/beta subu... 265 2e-69 UniRef50_UPI00018529F8 transcription termination factor Rho n=2 ... 227 8e-58 UniRef50_Q83MV6 Transcription termination factor Rho n=2 Tax=Tro... 205 3e-51 UniRef50_B9TD12 Transcription termination factor rho, putative (... 183 1e-44 UniRef50_A9U7E2 Predicted protein (Fragment) n=3 Tax=cellular or... 171 6e-41 UniRef50_UPI0001B43522 transcription termination factor Rho n=1 ... 139 3e-31 UniRef50_B0FLD3 Transcription termination factor Rho (Fragment) ... 130 1e-28 UniRef50_UPI0001C31DE0 transcription termination factor Rho n=1 ... 114 8e-24 UniRef50_UPI00017437AB transcription termination factor Rho n=1 ... 103 8e-21 UniRef50_Q93EE2 Probable transcription termination factor (Fragm... 91 8e-17 UniRef50_B0SE01 Endoflagellar biosynthesis/type III secretory pa... 85 4e-15 UniRef50_P74857 Probable secretion system apparatus ATP synthase... 85 5e-15 UniRef50_P55717 Probable ATP synthase y4yI n=30 Tax=Bacteria Rep... 83 2e-14 UniRef50_Q141X8 ATPase FliI/YscN n=11 Tax=Proteobacteria RepID=Q... 80 1e-13 UniRef50_C0QAK1 FliI n=9 Tax=root RepID=C0QAK1_DESAH 80 1e-13 UniRef50_A3SFS3 Flagellum-specific ATP synthase n=3 Tax=Rhodobac... 80 1e-13 UniRef50_C3KNB0 Type III secretion component, RhcN, ATP synthase... 80 2e-13 UniRef50_UPI00016C3500 Flagellar biosynthesis/type III secretory... 79 3e-13 UniRef50_UPI0001C31239 flagellar protein export ATPase FliI n=1 ... 79 3e-13 UniRef50_C0QPA7 Flagellar protein export ATPase FliI n=1 Tax=Per... 78 6e-13 UniRef50_Q0EZL2 Flagellum-specific ATP synthase n=1 Tax=Mariprof... 78 8e-13 UniRef50_O85632 EscN n=34 Tax=Enterobacteriaceae RepID=O85632_ECOLX 77 8e-13 UniRef50_D2R528 ATPase, FliI/YscN family n=4 Tax=Planctomycetace... 77 1e-12 UniRef50_P0A1C0 Probable ATP synthase spaL n=121 Tax=Proteobacte... 77 1e-12 UniRef50_B2V6Q6 Flagellar protein export ATPase FliI n=4 Tax=Bac... 77 1e-12 UniRef50_A7HV56 Flagellar protein export ATPase FliI n=8 Tax=Rhi... 77 2e-12 UniRef50_O67531 Flagellum-specific ATP synthase n=3 Tax=Aquifica... 76 3e-12 UniRef50_D1BD12 Type III secretion system ATPase, FliI/YscN n=1 ... 75 5e-12 UniRef50_Q1D9L1 ATPase, FliI/YscN family n=2 Tax=Cystobacterinea... 74 7e-12 UniRef50_P80153 Probable ATP synthase hrpB6 n=230 Tax=Bacteria R... 74 1e-11 UniRef50_A6W8K0 ATPase, FliI/YscN family n=44 Tax=Bacteria RepID... 74 1e-11 UniRef50_Q12T73 ATPase FliI/YscN n=1 Tax=Shewanella denitrifican... 74 1e-11 UniRef50_C1A560 Flagellum-specific ATP synthase n=6 Tax=Bacteria... 73 2e-11 UniRef50_B9L4D4 Flagellar protein export ATPase FliI n=13 Tax=Ba... 73 2e-11 UniRef50_O83417 Flagellum-specific ATP synthase n=106 Tax=Bacter... 73 2e-11 UniRef50_B3Q296 Type III secretion system ATP synthase protein n... 72 3e-11 UniRef50_Q9I4N1 Flagellum-specific ATP synthase n=174 Tax=Proteo... 71 9e-11 UniRef50_UPI0001854468 transcription termination factor Rho n=1 ... 70 1e-10 UniRef50_Q5DY25 Lateral flagellar export/assembly protein (LfiI-... 70 1e-10 UniRef50_B8H363 Flagellum-specific ATP synthase n=5 Tax=Alphapro... 70 2e-10 UniRef50_A0AGH1 Complete genome n=21 Tax=Listeria RepID=A0AGH1_L... 70 2e-10 UniRef50_C8WBT8 ATPase, FliI/YscN family n=7 Tax=Sphingomonadale... 70 2e-10 UniRef50_Q52371 Type III secretion ATP synthase hrcN n=14 Tax=Ps... 69 2e-10 UniRef50_O34171 Flagellum-specific ATP synthase n=19 Tax=Alphapr... 69 3e-10 UniRef50_P52607 Flagellum-specific ATP synthase n=21 Tax=Borreli... 69 3e-10 UniRef50_Q1GNY4 ATPase FliI/YscN n=3 Tax=Bacteria RepID=Q1GNY4_S... 69 5e-10 UniRef50_Q65JM5 Flagellar-specific ATP synthase n=9 Tax=Bacteria... 68 5e-10 UniRef50_C7R0J8 ATPase, FliI/YscN family n=1 Tax=Jonesia denitri... 67 8e-10 UniRef50_Q2LRZ2 Flagellum-specific ATP synthase n=20 Tax=Bacteri... 67 9e-10 UniRef50_A3V245 FliI, Flagellum-specific ATPase n=4 Tax=Rhodobac... 67 1e-09 UniRef50_D2UDN1 Probable xanthomonas secretion apparatus protein... 67 2e-09 UniRef50_Q2RX15 ATPase FliI/YscN n=35 Tax=Alphaproteobacteria Re... 67 2e-09 UniRef50_C0QZ72 Flagellar biosynthesis/type III secretory pathwa... 66 2e-09 UniRef50_Q6AGA5 Flagellum-like ATP synthase n=1 Tax=Leifsonia xy... 66 2e-09 UniRef50_B8J143 ATPase FliI/YscN n=13 Tax=cellular organisms Rep... 66 2e-09 UniRef50_A8LMQ4 Flagellum-specific ATP synthase n=32 Tax=Rhodoba... 66 3e-09 UniRef50_Q2NVI5 Type III secretion apparatus SpaL/InvC n=11 Tax=... 66 3e-09 UniRef50_C7UQS9 Transcription termination factor Rho n=1 Tax=Ent... 65 4e-09 UniRef50_A6GN32 Type III secretion protein n=1 Tax=Limnobacter s... 65 4e-09 UniRef50_C6N705 Flagellar protein export ATPase FliI n=1 Tax=Leg... 65 6e-09 UniRef50_D2TY23 Type III secretion cytoplasmic ATP synthase (Ysc... 65 6e-09 UniRef50_D2LCY5 ATPase, FliI/YscN family n=1 Tax=Rhodomicrobium ... 64 9e-09 UniRef50_Q058C4 Flagellum-specific ATP synthase n=2 Tax=cellular... 62 4e-08 UniRef50_A6AXF1 VcsN2 n=15 Tax=Gammaproteobacteria RepID=A6AXF1_... 62 5e-08 UniRef50_A1T0I0 ATPase, FliI/YscN family protein n=1 Tax=Psychro... 62 5e-08 UniRef50_Q0C5J4 Flagellar protein export ATPase FliI n=1 Tax=Hyp... 61 1e-07 UniRef50_C5CYE4 ATPase, FliI/YscN family n=1 Tax=Variovorax para... 59 3e-07 UniRef50_D2BZ50 Type III secretion apparatus H+-transporting two... 59 3e-07 UniRef50_P52158 Transcription termination factor rho (Fragment) ... 58 8e-07 UniRef50_A0RC86 Flagellum-specific ATP synthase n=70 Tax=Bacillu... 57 1e-06 UniRef50_B1TCL2 ATPase, FliI/YscN family n=1 Tax=Burkholderia am... 56 2e-06 UniRef50_UPI0001B464D8 transcription termination factor Rho n=6 ... 56 3e-06 UniRef50_A1WUC0 Flagellar protein export ATPase FliI n=15 Tax=Ba... 56 3e-06 UniRef50_C6DIX7 Type III secretion apparatus H+-transporting two... 55 3e-06 UniRef50_A1UTV1 Flagellum-specific ATP synthase n=55 Tax=Alphapr... 55 3e-06 UniRef50_A2W3Z6 ATPase FliI/YscN n=1 Tax=Burkholderia cenocepaci... 55 4e-06 UniRef50_C0QS16 ATP synthase subunit alpha n=2 Tax=Bacteria RepI... 54 8e-06 UniRef50_Q9ZJJ3 Flagellum-specific ATP synthase n=41 Tax=Epsilon... 54 1e-05 UniRef50_Q74MJ7 V-type ATP synthase alpha chain n=1 Tax=Nanoarch... 54 2e-05 UniRef50_C1F987 Flagellar protein export ATPase FliI n=1 Tax=Aci... 53 2e-05 UniRef50_B1H0B7 ATP synthase subunit alpha n=3 Tax=Bacteria RepI... 53 2e-05 UniRef50_Q3J9F3 V-type ATP synthase alpha chain n=6 Tax=cellular... 52 3e-05 UniRef50_Q0AEI9 ATP synthase subunit alpha 2 n=5 Tax=Proteobacte... 52 5e-05 UniRef50_B7JY91 H+transporting two-sector ATPase alpha/beta subu... 51 7e-05 UniRef50_P52612 Flagellum-specific ATP synthase n=269 Tax=Proteo... 51 1e-04 UniRef50_C6P430 H+transporting two-sector ATPase alpha/beta subu... 51 1e-04 UniRef50_Q21Z99 ATP synthase subunit alpha 2 n=29 Tax=cellular o... 50 2e-04 UniRef50_Q98QX5 ATP SYNTHASE ALPHA CHAIN n=2 Tax=Mycoplasma RepI... 50 2e-04 UniRef50_C5S8P1 H+transporting two-sector ATPase alpha/beta subu... 49 4e-04 UniRef50_B0B8U3 Flagellum-specific ATP synthase n=15 Tax=Chlamyd... 49 4e-04 UniRef50_D1B4Z7 Flagellar protein export ATPase FliI n=6 Tax=Cam... 49 4e-04 UniRef50_B9L760 ATP synthase alpha/beta family, nucleotide-bindi... 48 7e-04 UniRef50_Q4A6P2 ATP synthase alpha chain n=2 Tax=Mycoplasma syno... 48 7e-04 UniRef50_C0QV76 V-type ATP synthase subunit A n=3 Tax=Bacteria R... 47 0.001 UniRef50_Q724W6 ATP synthase subunit alpha 1 n=17 Tax=Listeria R... 47 0.001 UniRef50_Q1K2D4 ATP synthase subunit alpha n=1 Tax=Desulfuromona... 47 0.002 UniRef50_A3MXY7 V-type ATP synthase alpha chain n=12 Tax=Archaea... 46 0.002 UniRef50_C4ZAP4 Flagellar protein export ATPase FliI n=1 Tax=Eub... 45 0.004 UniRef50_A1RX21 V-type ATP synthase alpha chain n=14 Tax=cellula... 45 0.004 UniRef50_Q4A6P1 ATP synthase beta chain n=10 Tax=Mycoplasma RepI... 45 0.006 UniRef50_D1J8A1 ATP synthase alpha chain n=1 Tax=Mycoplasma homi... 44 0.008 UniRef50_A5IY82 ATP synthase alpha chain n=23 Tax=Mycoplasmatace... 44 0.008 UniRef50_Q2ST36 ATP synthase subunit alpha n=4 Tax=Mycoplasma my... 44 0.009 UniRef50_C3JMT5 Putative transcriptional regulator n=1 Tax=Rhodo... 44 0.010 UniRef50_C1TMJ4 Archaeal/vacuolar-type H+-ATPase subunit A n=1 T... 44 0.014 UniRef50_A2BKX6 V-type ATP synthase alpha chain n=17 Tax=cellula... 43 0.017 UniRef50_Q15SF7 ATP synthase subunit beta 1 n=26 Tax=cellular or... 43 0.021 UniRef50_Q4HGU5 Transcription termination factor Cj1156 n=1 Tax=... 43 0.021 UniRef50_C0QT21 V-type ATP synthase alpha chain (V-type ATPase s... 43 0.024 UniRef50_Q98QB7 ATP synthase subunit alpha 2 n=1 Tax=Mycoplasma ... 43 0.024 UniRef50_B7AW25 ATP synthase subunit alpha n=10 Tax=Bacteria Rep... 43 0.026 UniRef50_Q6MAJ5 V-type ATP synthase alpha chain n=39 Tax=Bacteri... 43 0.026 UniRef50_Q2SNG7 ATP synthase subunit alpha 1 n=10 Tax=Bacteria R... 42 0.030 UniRef50_A7HDG9 V-type ATP synthase alpha chain n=2 Tax=Deltapro... 42 0.038 UniRef50_Q8FXF0 Flagellum-specific ATP synthase FliI n=3 Tax=Bru... 42 0.042 UniRef50_D1J8A0 ATP synthase beta chain n=1 Tax=Mycoplasma homin... 41 0.074 UniRef50_C4N426 ATP synthase F1 alpha subunit n=1 Tax=uncultured... 41 0.080 UniRef50_C4DDR2 Archaeal/vacuolar-type H+-ATPase subunit A n=2 T... 41 0.086 UniRef50_Q9C5A9 ATP synthase subunit beta-3, mitochondrial n=930... 41 0.092 >UniRef50_B2IAB8 Transcription termination factor Rho n=6 Tax=Bacteria RepID=B2IAB8_XYLF2 Length = 564 Score = 626 bits (1615), Expect = e-178, Method: Compositional matrix adjust. Identities = 298/418 (71%), Positives = 360/418 (86%), Gaps = 1/418 (0%) Query: 2 NLTELKNTPVSELITLGENMGL-ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +L++LK P +L+ + E + + E +AR RKQD+IFA+LK + GE +F DGVLEIL D Sbjct: 147 SLSDLKKMPAHKLLEIAEQLNIHEGVARARKQDVIFALLKVLTRHGEGVFADGVLEILPD 206 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLR+A++SYLAGPDD Y+SPSQIRRFNLRTGD +SG+IR PK+GERYFAL V+ +N Sbjct: 207 GFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTIN 266 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 + E ++NKILFENLTPL R R+ER +GSTED+T R+LDL +P G+GQR LIV+PP Sbjct: 267 GEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRILDLMAPQGKGQRALIVSPP 326 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 KAGKTML+Q +A +I NHP+ L+VLLIDERPEEVTEMQR V+GEV++STFDEPA+RHV Sbjct: 327 KAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHV 386 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 QVAEMVIE+AKRL+EHKKDV+ILLDSITRLARAYN VVP+SGKVLTGGVDA+ALHRPKRF Sbjct: 387 QVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAHALHRPKRF 446 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGN ELHL+R+IAEKRV+PAID Sbjct: 447 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNCELHLNRRIAEKRVYPAIDI 506 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 NRSGTR+E+LL + LQK+WILRK++HPM EI A+EF+++K+ TK+ND+FF MKR Sbjct: 507 NRSGTRREDLLIESDLLQKIWILRKLLHPMDEIAAIEFVLDKMKNTKSNDEFFGSMKR 564 >UniRef50_P52156 Transcription termination factor rho n=224 Tax=Bacteria RepID=RHO_RHOS4 Length = 422 Score = 595 bits (1535), Expect = e-169, Method: Compositional matrix adjust. Identities = 281/416 (67%), Positives = 354/416 (85%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +NL +LK ++L+ + E +EN MRK +++F+ILK+HA+ G ++ GDGVLE+LQD Sbjct: 5 LNLADLKAKTPADLLAMAEEWEIENAPSMRKGEMMFSILKEHAEEGYEVGGDGVLEVLQD 64 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRS +++YL GPDDIYVSP +R+F+LRTGDTI G I P+E ERYF+L +V ++N Sbjct: 65 GFGFLRSPEANYLPGPDDIYVSPEILRQFSLRTGDTIEGVIVAPRENERYFSLTRVTKIN 124 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 FD PE AR+K+ F+NLTPL+ + RL+ME + + +D +AR++DL +PIG+GQRGLIVAPP Sbjct: 125 FDDPERARHKVHFDNLTPLYPDERLKMEVDDPTMKDRSARIIDLVAPIGKGQRGLIVAPP 184 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+LLQNIA SIA NHP+C L+VLLIDERPEEVT+MQR VKGEVV+STFDEPA+RHV Sbjct: 185 RTGKTVLLQNIAHSIATNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV 244 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 VAEMVIEKAKRLVEHK+DV+ILLDSITRL RA+NTVVP+SGKVLTGGVDANAL RPKRF Sbjct: 245 AVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQRPKRF 304 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARN+EEGGSLTIIATALIDTGS+MDEVI+EEFKGTGN E+ L RK+A+KRVFPA+D Sbjct: 305 FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVFPAMDI 364 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 +SGTRKE+LL + +LQK ++LR+I++PMG DA+EFLI+KL TK+N +FF+ M Sbjct: 365 LKSGTRKEDLLVDKSDLQKTYVLRRILNPMGTTDAIEFLISKLRQTKSNAEFFDSM 420 >UniRef50_Q1RIJ6 Transcription termination factor n=863 Tax=cellular organisms RepID=RHO_RICBR Length = 449 Score = 590 bits (1521), Expect = e-167, Method: Compositional matrix adjust. Identities = 283/417 (67%), Positives = 350/417 (83%), Gaps = 1/417 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +NL ELK EL E + +EN++ +RKQ+++FAILK+ + G I G+GVLE+L D Sbjct: 28 INLKELKRKLPEELQAQAEELKIENVSSLRKQELVFAILKKSVEQGGSIVGEGVLEVLPD 87 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRS + +YLAGPDDIY+SPSQIRRF LRTGDT+ G+IR PKEGERYFALLKVN+VN Sbjct: 88 GFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGRIRAPKEGERYFALLKVNKVN 147 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 F+ P A +++ F+NLTPL+ + +L +E + S +D + RV++L +P+G+GQR LIVAPP Sbjct: 148 FEDPSKAYHRVNFDNLTPLYPDEKLGLELEDNS-KDFSTRVIELVAPMGKGQRALIVAPP 206 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+LLQNIA +I N+P+ L+VLLIDERPEEVT+MQR V+GEVV+STFDEPASRHV Sbjct: 207 RTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPASRHV 266 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 Q+AEMVIEKAKRLVEHKKDV+IL+D+ITRLARAYNTVVP+SGKVLTGGVDANAL RPKRF Sbjct: 267 QLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF 326 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARN+E GGSLTII TALI+TGS+MDEVI+EEFKGTGN E+ L RKIA+KR++PAID Sbjct: 327 FGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEIVLDRKIADKRIYPAIDI 386 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 RSGTRKE+LL + L KMW+LR+II PMG +A+EFL+ KL TKTN++FFEMMK Sbjct: 387 TRSGTRKEDLLVDKIVLNKMWVLRRIIDPMGSSEAIEFLLKKLEHTKTNNEFFEMMK 443 >UniRef50_C8PNN3 Transcription termination factor Rho n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNN3_9SPIO Length = 543 Score = 540 bits (1392), Expect = e-152, Method: Compositional matrix adjust. Identities = 251/393 (63%), Positives = 328/393 (83%), Gaps = 3/393 (0%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSP 83 E++ M+KQ+IIF ILK H ++G IF G LEIL DG+GFLRS +SYL+G DDIY+SP Sbjct: 148 EDMVAMKKQEIIFFILKHHTENGGIIFASGALEILPDGYGFLRSPQNSYLSGSDDIYISP 207 Query: 84 SQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANS 143 SQIR FNL+TGDT+ G+IR PKEGER+FALL+V VNF+ A+++I F+NLTPL+ Sbjct: 208 SQIRLFNLKTGDTVYGQIRSPKEGERFFALLRVESVNFEDVSVAQSRIPFDNLTPLYPRE 267 Query: 144 RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 203 +L +E ++E + R++DL PIG+GQR LIVAPP+ GKT+L+Q IA +I NHP+ Sbjct: 268 KLNLE---TTSELYSTRIMDLFCPIGKGQRSLIVAPPRTGKTILMQQIANAITQNHPEVY 324 Query: 204 LMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 L+VLLIDERPEEVT+M+R V GEV++STFDE A+RHVQVAEMV+EKAKRLVEHKKDV+IL Sbjct: 325 LIVLLIDERPEEVTDMERTVHGEVISSTFDEQATRHVQVAEMVLEKAKRLVEHKKDVVIL 384 Query: 264 LDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDT 323 LDSITRLARAYN VP SGKVL+GGVD+NALH+PKRFFGAARN+EEGGSLTIIATALI+T Sbjct: 385 LDSITRLARAYNQTVPTSGKVLSGGVDSNALHKPKRFFGAARNIEEGGSLTIIATALIET 444 Query: 324 GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWIL 383 GS+MDEVI+EEFKGTGNME++L R+++++R+FPAI+ +SGTRKEELL + +LQ++W+L Sbjct: 445 GSRMDEVIFEEFKGTGNMEINLDRRLSDRRIFPAINIKKSGTRKEELLINEADLQRIWLL 504 Query: 384 RKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 RK+I+PM +++ M+ L++K+ +K N+ F ++M Sbjct: 505 RKVINPMDDLEIMDLLLDKMKKSKNNEVFLKLM 537 >UniRef50_O83281 Transcription termination factor rho n=27 Tax=Bacteria RepID=RHO_TREPA Length = 519 Score = 516 bits (1330), Expect = e-145, Method: Compositional matrix adjust. Identities = 248/393 (63%), Positives = 324/393 (82%), Gaps = 3/393 (0%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSP 83 E++ M+K DIIF +LK H ++G IF G LEIL DG+GFLRS +SYL G DDIYVSP Sbjct: 123 EDVVVMKKSDIIFHVLKNHTENGGVIFASGSLEILPDGYGFLRSPQNSYLPGSDDIYVSP 182 Query: 84 SQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANS 143 SQIR FNL+TGDTI G+IR PKEGER+FA+L+V VNF++ ++++ F++LTPL+ Sbjct: 183 SQIRLFNLKTGDTIYGQIRSPKEGERFFAMLRVETVNFEEVAKVQDRVPFDSLTPLYPRE 242 Query: 144 RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 203 +L +E TED++ RV++L PIG+GQR LIVAPP+ GKT+L+Q IA +I NHP+ Sbjct: 243 KLNLET---RTEDISTRVMNLFCPIGKGQRALIVAPPRTGKTILMQKIANAITQNHPEVY 299 Query: 204 LMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 L+VLLIDERPEEVT+M+R V EV++STFDE A+RHVQ+AE+V+E+AKRLVEH+KDV+IL Sbjct: 300 LIVLLIDERPEEVTDMERTVDAEVISSTFDEQATRHVQIAEIVLERAKRLVEHRKDVVIL 359 Query: 264 LDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDT 323 LDSITRLARAYN +P SGKVL+GGVD+NALH+PKRFFGAARNVEEGGSLTIIATALI+T Sbjct: 360 LDSITRLARAYNQTMPTSGKVLSGGVDSNALHKPKRFFGAARNVEEGGSLTIIATALIET 419 Query: 324 GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWIL 383 GS+MDEVI+EEFKGTGNME++L R+++++R+FPA+ +SGTRKEELL T+EE+Q++W+L Sbjct: 420 GSRMDEVIFEEFKGTGNMEINLDRRLSDRRLFPAVSIKKSGTRKEELLLTEEEMQRIWVL 479 Query: 384 RKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 RK+I+PM + + +E LI+K+ TK N+ F M Sbjct: 480 RKVINPMDDAEIVELLIDKMRKTKNNEAFLRSM 512 >UniRef50_D2R072 Transcription termination factor Rho n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R072_9PLAN Length = 518 Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust. Identities = 239/419 (57%), Positives = 328/419 (78%), Gaps = 6/419 (1%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +++TEL+ +++LI ++ A M++QD+IF ILK+ K ++G+G LEIL D Sbjct: 100 LHITELQRMSMAQLIEEARQENVDEAAGMKRQDLIFRILKERVKISGLMYGEGTLEILPD 159 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRS D YL+ PDDIYVSPSQIRRF LRTG T+SG+IRPPKE ERYFALL+V +N Sbjct: 160 GFGFLRSPDYHYLSCPDDIYVSPSQIRRFGLRTGATVSGQIRPPKENERYFALLRVEAIN 219 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 + P +N++ F++LTPLH + R+ ME +++ RV+DL +PIG GQRGLIV+PP Sbjct: 220 YQDPNLTQNRVQFDDLTPLHPDKRITMEY---DADEIATRVIDLVTPIGFGQRGLIVSPP 276 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG---EVVASTFDEPAS 237 +AGKT+++Q +A+++ N P+ +++LL+DERPEEVT+M+R VKG EV++STFDEP + Sbjct: 277 RAGKTVIMQKMARAVLQNFPEAYVIMLLVDERPEEVTDMERQVKGPNCEVISSTFDEPPA 336 Query: 238 RHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRP 297 RHVQV++MV+EKAKRLVE DV+I LDSITRLARA+N+ P SGK+LTGG+DANAL +P Sbjct: 337 RHVQVSQMVLEKAKRLVECGVDVVIFLDSITRLARAWNSECPQSGKLLTGGLDANALQQP 396 Query: 298 KRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPA 357 KRFFG+AR VEEGGSLTI+ATALIDTGSKMD+VI+EEFKGTGN+E++L R++ +KR++PA Sbjct: 397 KRFFGSARKVEEGGSLTILATALIDTGSKMDDVIFEEFKGTGNLEIYLDRRLVDKRIWPA 456 Query: 358 IDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 ID RSGTR+EE+L EE +++ ++R+++ M DAM+ L+ ++A TKTN +F M Sbjct: 457 IDITRSGTRREEILMDPEEYRRVSVMRRLLSEMNPPDAMDLLVTRMAKTKTNAEFLMSM 515 >UniRef50_D1N6X9 Transcription termination factor Rho n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N6X9_9BACT Length = 637 Score = 503 bits (1295), Expect = e-141, Method: Compositional matrix adjust. Identities = 243/413 (58%), Positives = 315/413 (76%), Gaps = 3/413 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +N++EL+ + EL +G +G+E + + K ++ IL+ +A+ +FG G LE+L D Sbjct: 220 LNISELQEKSMQELAVMGAELGIEGIGALDKSTLVCEILRANAEKCGQMFGSGYLEVLPD 279 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRS SYL +DIY+SPSQI+RF L+TGD I+G+IR P+E ER+FA+LKV +N Sbjct: 280 GFGFLRSPSYSYLPCSEDIYLSPSQIKRFALKTGDFIAGQIRTPREKERFFAMLKVESIN 339 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 D PE + I F +L P RL +ER D + R++DL +PIG+GQRGLIVAPP Sbjct: 340 NDSPERKKEIIPFNSLVPYFPTQRLVLER---DPADYSTRIVDLVTPIGKGQRGLIVAPP 396 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+LLQ IA SI N+P+ L++LLIDERPEEVT+M R V EVV+STFDEP RHV Sbjct: 397 RTGKTVLLQKIANSIRANNPEVKLIILLIDERPEEVTDMMRSVDAEVVSSTFDEPPERHV 456 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 QVAEMVIEKAKR+VE+K+DV+ILLDSITRLARAYNT+ P SGK+LTGGVDA ALH+PKRF Sbjct: 457 QVAEMVIEKAKRMVEYKQDVVILLDSITRLARAYNTLQPHSGKILTGGVDATALHKPKRF 516 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARN+E GSLTIIATAL++TGS+MD+VI+EEFKGTGNMELHL R ++++R++PAI+ Sbjct: 517 FGAARNIENHGSLTIIATALVETGSRMDDVIFEEFKGTGNMELHLDRNVSDRRIYPAINV 576 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFF 413 +SGTRKEELL +EL K+WILRK I+ + +AME L+ +L KTN +F Sbjct: 577 EKSGTRKEELLLHPDELNKVWILRKAINGVPPAEAMELLLGRLKKVKTNIEFL 629 >UniRef50_D2QLY9 Transcription termination factor Rho n=2 Tax=Flexibacteraceae RepID=D2QLY9_9SPHI Length = 750 Score = 494 bits (1271), Expect = e-138, Method: Compositional matrix adjust. Identities = 248/393 (63%), Positives = 308/393 (78%), Gaps = 11/393 (2%) Query: 28 RMRKQDIIFAILKQHAKSGEDIF-GDGVLEILQDG-FGFLRSADSSYLAGPDDIYVSPSQ 85 R+R+Q QH + + I +GVLEI+QDG +GFLRSAD +YLA PDDIYVSPSQ Sbjct: 367 RIRRQ------YNQHIREFDGIIDNEGVLEIMQDGGYGFLRSADYNYLASPDDIYVSPSQ 420 Query: 86 IRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRL 145 I+ F L+TGDT+ G IRPPKEGE+YFALL+V+ VN E R++I FE LTPL +L Sbjct: 421 IKLFGLKTGDTVRGAIRPPKEGEKYFALLRVSTVNGKTTEEIRDRIPFEYLTPLFPEEQL 480 Query: 146 RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 205 + + E+ ++RVLDL +PIG+GQRG+IVA PK GKT+LL+ IA +I NHP+ L+ Sbjct: 481 HL---SNRPENYSSRVLDLFAPIGKGQRGMIVAQPKTGKTVLLKEIANAITKNHPEVYLI 537 Query: 206 VLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLD 265 VLLIDERPEEVT+M R V EV++STFDE A RHV+V+ MV+EKAKR+VE DV+ILLD Sbjct: 538 VLLIDERPEEVTDMARSVNAEVISSTFDEQADRHVKVSSMVLEKAKRMVECGHDVVILLD 597 Query: 266 SITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGS 325 SITRLARAYNTVVP+SGK+L+GGVDANALHRPKRFFGAARNVE GGSLTIIATALIDTGS Sbjct: 598 SITRLARAYNTVVPSSGKILSGGVDANALHRPKRFFGAARNVENGGSLTIIATALIDTGS 657 Query: 326 KMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRK 385 KMDEVI+EEFKGTGNMEL L RK+A KRV+PAID SGTR+E+LL +E LQ++WILRK Sbjct: 658 KMDEVIFEEFKGTGNMELQLDRKLANKRVYPAIDVMASGTRREDLLLDKETLQRVWILRK 717 Query: 386 IIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 + M +++M+FL+ + T++N++F M R Sbjct: 718 HMADMNPMESMDFLLGHMKGTRSNEEFLISMNR 750 >UniRef50_A6DIN5 Transcription termination factor Rho n=2 Tax=Chlamydiae/Verrucomicrobia group RepID=A6DIN5_9BACT Length = 613 Score = 493 bits (1268), Expect = e-138, Method: Compositional matrix adjust. Identities = 236/415 (56%), Positives = 318/415 (76%), Gaps = 3/415 (0%) Query: 2 NLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61 NL+E++ ++EL L + +E + + KQ +++ IL+ A ++G GVLE+ ++G Sbjct: 200 NLSEIQQKSMAELNELANALEVEGVGSIGKQQLVYEILQAQASDQGILYGGGVLEVFKEG 259 Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 +GFLRS++ SY+ P+DIY+SP Q+RRF+LRTGDT+ G +R ++ ER+FA++KV+ +N Sbjct: 260 YGFLRSSEYSYMPSPEDIYLSPKQVRRFSLRTGDTVMGAVRAAQDQERFFAMIKVDAING 319 Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 + P+ +NKI FE+LTP R+ ME + + RVLDL P+G GQRGLIVAPP+ Sbjct: 320 EDPKEKKNKIPFESLTPDFPEYRMHMET---EPTNHSMRVLDLVVPVGAGQRGLIVAPPR 376 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQ 241 GKT+L+Q+IA SIA N+PD L+VLLIDERPEEVT+M+R VKGEV++STFDEP +RHVQ Sbjct: 377 TGKTVLMQSIANSIATNNPDFHLIVLLIDERPEEVTDMKRNVKGEVISSTFDEPPTRHVQ 436 Query: 242 VAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFF 301 VAEMVIEKAKR+VEH K+V++LLDSITRLARAYNTV P SGK+L+GGVDANALH+PKRFF Sbjct: 437 VAEMVIEKAKRMVEHGKNVVVLLDSITRLARAYNTVQPHSGKILSGGVDANALHKPKRFF 496 Query: 302 GAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYN 361 GAAR ++EGGSLTI+ATAL+DTGSKMDEVI+EEFKGTGNME+ L R + +KR+FPAI+ Sbjct: 497 GAARRIQEGGSLTILATALVDTGSKMDEVIFEEFKGTGNMEICLDRGMIDKRIFPAINIE 556 Query: 362 RSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 +SG RKEELL +E + MW LR+ M + M+ ++N + TK+N +F M Sbjct: 557 KSGARKEELLLDPKEKELMWKLRRAAISMPTTEGMKIILNGVKKTKSNVEFLMTM 611 >UniRef50_D1CBT1 Transcription termination factor Rho n=9 Tax=Bacteria RepID=D1CBT1_THET1 Length = 642 Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust. Identities = 233/416 (56%), Positives = 313/416 (75%), Gaps = 5/416 (1%) Query: 3 LTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGF 62 EL++ + L+ LG ++ +E M K+ +I+ IL+ A + G+L+I++DGF Sbjct: 230 FAELQSMTKTNLLALGRSLEVEVSGSMTKETLIYKILEAQANRAGYLLKQGILDIIEDGF 289 Query: 63 GFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFD 122 GFLR YL PDD+YVS SQIRRF LRTGD + G++R PK+ E+Y +LL+V VN+ Sbjct: 290 GFLRQ--ERYLPSPDDVYVSQSQIRRFGLRTGDHVIGQVRAPKDNEKYHSLLRVEAVNYM 347 Query: 123 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKA 182 PE AR + F+ LTP+ N +L +E + + L+ R++DL +PIGRGQRGLIV+PPKA Sbjct: 348 DPEAARKRPFFDQLTPIFPNRQLVLE---TTPKQLSTRLIDLVAPIGRGQRGLIVSPPKA 404 Query: 183 GKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQV 242 GKT LL++IA I +N+ D LM+LLI ERPEEVT+++R V+GEVVASTFDEP H +V Sbjct: 405 GKTTLLKDIANGITHNYDDVHLMMLLIGERPEEVTDIRRSVEGEVVASTFDEPVEDHTKV 464 Query: 243 AEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFG 302 AEM +E+AKRLVE KDV+IL+DSITRLARAYN VVPASG+ L+GG+D AL+ PKRFFG Sbjct: 465 AEMALERAKRLVECGKDVVILMDSITRLARAYNLVVPASGRTLSGGIDPVALYPPKRFFG 524 Query: 303 AARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 362 AARN++EGGSLTIIAT LIDTGS+MD+VIYEEFKGTGNMELHL RK+ E+R+FPAID R Sbjct: 525 AARNIDEGGSLTIIATCLIDTGSRMDDVIYEEFKGTGNMELHLDRKLQERRIFPAIDVQR 584 Query: 363 SGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 SGTR+EELL + +LQK+W +R+++ +G ++ E L+N+LA T+ N++F + + Sbjct: 585 SGTRREELLIPEPKLQKIWTMRRMVSMLGGLEGTELLLNRLAKTENNEEFLNTLNK 640 >UniRef50_Q9ZLS9 Transcription termination factor rho n=117 Tax=Bacteria RepID=RHO_HELPJ Length = 438 Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust. Identities = 225/415 (54%), Positives = 316/415 (76%), Gaps = 3/415 (0%) Query: 2 NLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61 ++ +L+ P +L+ + + +EN ++QD++F ILK G I G+LEI+ DG Sbjct: 24 HIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDG 83 Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 +GFLR D S+ G +D YVSPSQIRRF LR GD ++G++R PK+ E+Y+ALLK+ +N+ Sbjct: 84 YGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINY 143 Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 + +N+ LF+NLTPL + ++++E +T R+LDL SP+G+GQR LIVAPP+ Sbjct: 144 LPSDEIKNRPLFDNLTPLFPDEQIKLEY---EPTKVTGRMLDLFSPVGKGQRALIVAPPR 200 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQ 241 GKT L++ +AQ I NHP+ L++LL+DERPEEVT+MQR VKG+V +STFD PA+ H++ Sbjct: 201 TGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIR 260 Query: 242 VAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFF 301 +AE+V+E+AKR VE KDV++LLDSITRLARAYN V P+SGKVL+GGVDANALHRPKRFF Sbjct: 261 IAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFF 320 Query: 302 GAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYN 361 GAARN+EEGGSLTIIATALI+TGS+MDEVI+EEFKGTGN E+ L+R IA++R++PA D Sbjct: 321 GAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDIL 380 Query: 362 RSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 +SGTRK+ +L ++ L K+W+LR ++ M +I+A+ F+ +K+ TK N++F +M Sbjct: 381 KSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQTKDNEEFLNLM 435 >UniRef50_D0MEG0 Transcription termination factor Rho n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEG0_RHOM4 Length = 518 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/368 (61%), Positives = 296/368 (80%), Gaps = 3/368 (0%) Query: 49 IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGE 108 I GVLEI+ DG+GFLRS D +YL GPDDIYVSPSQI+RF+LR GDTI G +RPPKEGE Sbjct: 152 IIKSGVLEIMPDGYGFLRSPDYNYLPGPDDIYVSPSQIKRFSLRLGDTIEGLVRPPKEGE 211 Query: 109 RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPI 168 R+FAL++V++VN PE + F+ LTPL+ ++R+E S + + R+LDL +PI Sbjct: 212 RFFALIQVHKVNGRPPEEMEERQSFDYLTPLYPTEQIRLE---TSPNEYSTRILDLFAPI 268 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVV 228 G+GQRGLIVAPPK GKT+LLQ IA +I NHP+ L++LL+DERPEEVT+M+R VK EV+ Sbjct: 269 GKGQRGLIVAPPKTGKTILLQKIANAITTNHPEIYLIILLVDERPEEVTDMERNVKAEVI 328 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGG 288 +STFD+ RHV+VA++V+EKAKRLVE K+DV+ILLDSITRLARA+N V P++GK L+GG Sbjct: 329 SSTFDQDPERHVEVADIVLEKAKRLVEAKQDVVILLDSITRLARAHNAVTPSTGKTLSGG 388 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 ++A AL PKRFFGAARNVEEGGSLTII TALI+TGS+MDEVI+EEFKGTGNMEL L R+ Sbjct: 389 IEAGALRGPKRFFGAARNVEEGGSLTIIGTALIETGSRMDEVIFEEFKGTGNMELVLDRQ 448 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKT 408 +A++R+FPAI +SGTR+EELL + +L ++W+LRKI+ M ++AM FL+ K+ T++ Sbjct: 449 LADRRIFPAIHLIKSGTRREELLIPEAKLHRIWLLRKILADMDPVEAMIFLLEKMRGTRS 508 Query: 409 NDDFFEMM 416 ND+F M Sbjct: 509 NDEFLVTM 516 >UniRef50_B1I6H8 Transcription termination factor Rho n=6 Tax=Bacteria RepID=B1I6H8_DESAP Length = 492 Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust. Identities = 233/363 (64%), Positives = 284/363 (78%), Gaps = 5/363 (1%) Query: 51 GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERY 110 G LEIL +G+GFLR S +L DDIYVS SQIR+F+LRTGD +SG++RPPK+ E+Y Sbjct: 108 AQGYLEILPEGYGFLRP--SQFLPSNDDIYVSASQIRKFDLRTGDLVSGQVRPPKDTEKY 165 Query: 111 FALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGR 170 ALL+V VN ++ A + F+ LTPL+ RL +E S + + AR++DL SP+G+ Sbjct: 166 LALLRVETVNGEEAALAGRRRHFDELTPLYPQERLTLE---TSPDRIAARIIDLISPLGK 222 Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAS 230 GQRGLIVAPPKAGKT LL+ IA SI NHP+ VLM+LLIDERPEEVT++QR VK EV+AS Sbjct: 223 GQRGLIVAPPKAGKTTLLKEIANSITSNHPEVVLMILLIDERPEEVTDIQRSVKAEVIAS 282 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVD 290 TFDEPA HV+V EMV+E+AKRLVEHKKDV ILLDSITRL RAYN VVP SG+ L+GGVD Sbjct: 283 TFDEPAENHVRVTEMVLERAKRLVEHKKDVAILLDSITRLGRAYNLVVPTSGRTLSGGVD 342 Query: 291 ANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA 350 ALH+PKRFFGAAR +EEGGSLTI+ATALI+TGS+MDEVI+EEFKGTGNMEL L R+I+ Sbjct: 343 PAALHKPKRFFGAARKIEEGGSLTILATALIETGSRMDEVIFEEFKGTGNMELILDRRIS 402 Query: 351 EKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 E+R+FPAID RSGTRKEELL T +EL+ MW RK + M DAME LI ++ T++N Sbjct: 403 ERRIFPAIDVQRSGTRKEELLLTSDELELMWYFRKTTNQMSSSDAMEHLIEEMRRTRSNR 462 Query: 411 DFF 413 D Sbjct: 463 DLL 465 >UniRef50_C7PLF9 Transcription termination factor Rho n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLF9_CHIPD Length = 576 Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust. Identities = 221/368 (60%), Positives = 292/368 (79%), Gaps = 3/368 (0%) Query: 49 IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGE 108 I +GVLE++ DG+GFLRS+D +YL+ PDDIYVSPSQI+ F L+TGDT+ G +RPPKEGE Sbjct: 210 IISEGVLEMMPDGYGFLRSSDYNYLSSPDDIYVSPSQIKLFGLKTGDTVKGSVRPPKEGE 269 Query: 109 RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPI 168 +YFALLKV +N PE R+++ F+ LTPL +LR+ ++ + + R++DL +PI Sbjct: 270 KYFALLKVETINGKSPEEVRDRVPFDYLTPLFPFEKLRL---TTTSNNYSTRIMDLFTPI 326 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVV 228 G+GQRGLIVA PK GKTMLL+ +A +IA NHP+ LMV+LIDERPEEVT+M+R VK EV+ Sbjct: 327 GKGQRGLIVAQPKVGKTMLLKEVANAIATNHPEVYLMVVLIDERPEEVTDMERSVKAEVI 386 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGG 288 ASTFDEPA +HV+V+ + ++KAKRLVE DV+ILLDSITRLARA+NTV PASGKVL+GG Sbjct: 387 ASTFDEPAEKHVKVSAIALQKAKRLVECGHDVVILLDSITRLARAHNTVAPASGKVLSGG 446 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 V+ANA+ +PK+FFGAAR +E GGSLTI+ATALIDTGSKMDEVI+EEFKGTGNMEL L RK Sbjct: 447 VEANAMQKPKQFFGAARKIENGGSLTILATALIDTGSKMDEVIFEEFKGTGNMELQLDRK 506 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKT 408 +A +R+FPAID + S TR+++LL ++ L+++ ILR + M ++M F++ + TK Sbjct: 507 LANRRIFPAIDVSASSTRRDDLLLEKDILKRIHILRNHLADMNTEESMHFMLQHMRGTKN 566 Query: 409 NDDFFEMM 416 N++F M Sbjct: 567 NEEFLISM 574 >UniRef50_D1PY04 Transcription termination factor Rho n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PY04_9BACT Length = 666 Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust. Identities = 220/368 (59%), Positives = 283/368 (76%), Gaps = 1/368 (0%) Query: 49 IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGE 108 I +GVLEI+ DG+GFLRS+D +YL+ PDDIYV+ QI+ +NL+TGD + +RPP+EGE Sbjct: 298 IEANGVLEIMPDGYGFLRSSDYNYLSSPDDIYVAGQQIKHYNLKTGDVVMCHVRPPREGE 357 Query: 109 RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPI 168 +YF L ++ +N P R++I FE+LTPL + + G+ T +++ R++DL SPI Sbjct: 358 KYFPLTSIDMINGRTPAEVRDRIPFEHLTPLFPEEKFTL-CGDSKTTNMSTRIVDLFSPI 416 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVV 228 G+GQR LIVA PK GKT+L++NIA +IA NHP+ LM+LLIDERPEEVT+M R V EV+ Sbjct: 417 GKGQRALIVAQPKTGKTILMKNIANAIAANHPEAYLMMLLIDERPEEVTDMARTVDAEVI 476 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGG 288 ASTFDEPA RHV++A +V+EKAKR+VE DV+I LDSITRLARAYNTV PASGKVLTGG Sbjct: 477 ASTFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGKVLTGG 536 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 VDANAL +PKRFFGAARN+E+GGSLTIIATALIDTGSKMDEVI+EEFKGTGNMEL L R Sbjct: 537 VDANALQKPKRFFGAARNIEKGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRS 596 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKT 408 ++ KR+FP+++ S TR+++LL + L +MWILRK I M I+AM + ++ T Sbjct: 597 LSNKRIFPSVNLIASSTRRDDLLQDKTTLDRMWILRKYISDMNPIEAMNTIHGRMQQTHD 656 Query: 409 NDDFFEMM 416 N +F M Sbjct: 657 NAEFLLSM 664 >UniRef50_C5CGH1 Transcription termination factor Rho n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGH1_KOSOT Length = 468 Score = 460 bits (1184), Expect = e-128, Method: Compositional matrix adjust. Identities = 222/418 (53%), Positives = 310/418 (74%), Gaps = 7/418 (1%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +++++L P+ EL L + +M K+D+IFA+LK +S F +GVLEI Sbjct: 49 IDISQLLKMPIRELYKLARKYSITGYTQMAKKDLIFAVLKAQTESYGYFFAEGVLEITDG 108 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G+GFLR+ D++ L +DIYVS SQIRRFNL TGD ++G++R PKEGE+YFALL++ +N Sbjct: 109 GYGFLRTLDNNLLPSSNDIYVSQSQIRRFNLNTGDWVAGQVRSPKEGEKYFALLRIEAIN 168 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTED--LTARVLDLASPIGRGQRGLIVA 178 A +I F+NL P++ + + +E TE ++ R++DL SPIG+GQRGLIVA Sbjct: 169 QKPVSYAEERISFQNLVPVYPDEKFILE-----TEPYIVSTRIIDLFSPIGKGQRGLIVA 223 Query: 179 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASR 238 PPKAGKT LL+ IA IA NHP+ + ++LLIDERPEEVT+++R V+A+ FD + Sbjct: 224 PPKAGKTTLLKEIANGIAENHPNTIRIILLIDERPEEVTDLRRSTDAHVIAAPFDMSPDK 283 Query: 239 HVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPK 298 ++VAE+ +E AKRLVE DV+ILLDSITRLARAYN VP SGK+L+GGVD +AL+ PK Sbjct: 284 QIRVAELTLEMAKRLVEFGYDVVILLDSITRLARAYNLYVPPSGKLLSGGVDPSALYHPK 343 Query: 299 RFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAI 358 FFGAARN+E+GGSLTII+TAL++TGSKMDEVI+EEFKGTGNMEL LSR++A KR+FPAI Sbjct: 344 HFFGAARNIEDGGSLTIISTALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAI 403 Query: 359 DYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 + N SGTRKEELL E L+K+W+LR+++ + E + ++ +++K+ TK+N++F +++ Sbjct: 404 NLNLSGTRKEELLLPPEILRKVWVLRRMLAGISEEEGLKVIVDKMKTTKSNEEFLDLI 461 >UniRef50_Q7UGV0 Probable transcription termination factor n=1 Tax=Rhodopirellula baltica RepID=Q7UGV0_RHOBA Length = 514 Score = 459 bits (1181), Expect = e-128, Method: Compositional matrix adjust. Identities = 222/417 (53%), Positives = 312/417 (74%), Gaps = 7/417 (1%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +N+ +L+ EL+ L E GL+ +A + +Q+++F +LK + ++G+G LEIL D Sbjct: 94 LNINDLQKLEHDELLALAETEGLQEIAALPRQELVFRLLKARMSANGLMYGEGTLEILPD 153 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRSA YL+ PDDIYVSPSQIRRF L TG ++G+IRPPKE ERYFALL++ +N Sbjct: 154 GFGFLRSAQYHYLSCPDDIYVSPSQIRRFGLHTGSHVAGQIRPPKENERYFALLRIEAIN 213 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 P + + F++LTPLH +R+ E +++L+ RV+DL +PIG GQRGLIV+PP Sbjct: 214 HADPMQRQRQKPFDDLTPLHPRTRIVTEH---DSQELSTRVVDLFTPIGFGQRGLIVSPP 270 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG---EVVASTFDEPAS 237 +AGKTML+Q++A+ + N+PD ++VLLIDERPEEVT+M+R ++ EV++STFDEP + Sbjct: 271 RAGKTMLMQSLARGVLNNYPDAYVVVLLIDERPEEVTDMEREIQSPQCEVISSTFDEPPA 330 Query: 238 RHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVV-PASGKVLTGGVDANALHR 296 RH+QVA+MV+EKAKR+VE DV+I LDSITRLARA+N+ A+GK+LTGG+DA A+ + Sbjct: 331 RHIQVAQMVVEKAKRMVESGTDVVIFLDSITRLARAFNSDSDSATGKLLTGGLDAGAMQK 390 Query: 297 PKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 356 PK FG+AR VEEGGSLTI+ATAL+DTGS+MD+VI+EEFKGTGN+E+ L + + +RV+P Sbjct: 391 PKSIFGSARKVEEGGSLTILATALVDTGSRMDDVIFEEFKGTGNLEIVLDQDLVARRVWP 450 Query: 357 AIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFF 413 AID RSGTR+EE+L QEE +++ LR+ + +D+M LI ++ T+ N +F Sbjct: 451 AIDLTRSGTRREEMLLDQEEHRRIETLRRDLAEHSPVDSMTELIKRMRKTQNNAEFL 507 >UniRef50_D1P9V5 Transcription termination factor Rho n=1 Tax=Prevotella copri DSM 18205 RepID=D1P9V5_9BACT Length = 743 Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust. Identities = 214/368 (58%), Positives = 281/368 (76%), Gaps = 1/368 (0%) Query: 49 IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGE 108 + +GVLE++ +G+GFLRS+D +YL+ PDD+YV+ S +++F L+TGD I K+RPP EGE Sbjct: 375 VKSNGVLEVISEGYGFLRSSDYNYLSSPDDVYVASSFVKKFGLKTGDVIECKVRPPHEGE 434 Query: 109 RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPI 168 +YF L + ++N P R+++ FE+LTPL + + + G+ T +L+ R++DL SPI Sbjct: 435 KYFPLTSIIKINGRDPSEVRDRVPFEHLTPLFPDEKFNL-CGDRRTTNLSTRIVDLFSPI 493 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVV 228 G+GQR LIVA PK GKT+L+++IA +IA NHP+ LM+LLIDERPEEVT+M R V EV+ Sbjct: 494 GKGQRALIVAQPKTGKTILMKDIANAIAANHPEAYLMMLLIDERPEEVTDMARTVNAEVI 553 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGG 288 ASTFDEPA RHV++A +V+EKAKR+VE DV+I LDSITRLARAYNT PASGKVLTGG Sbjct: 554 ASTFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTTAPASGKVLTGG 613 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 VDANAL +PKR FGAARN+E GGSLTIIATAL DTGSKMDEVI+EEFKGTGNMEL L R Sbjct: 614 VDANALQKPKRLFGAARNIEGGGSLTIIATALTDTGSKMDEVIFEEFKGTGNMELQLDRS 673 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKT 408 ++ KR+FPA++ S TR+++LL + L +MWILRK + M I+AM + + T+ Sbjct: 674 LSNKRIFPAVNLISSSTRRDDLLQDKTTLDRMWILRKYLSDMNSIEAMSTIHKNMQHTRN 733 Query: 409 NDDFFEMM 416 ND+F M Sbjct: 734 NDEFLLSM 741 >UniRef50_A9BEQ5 Transcription termination factor Rho n=3 Tax=Bacteria RepID=A9BEQ5_PETMO Length = 441 Score = 456 bits (1174), Expect = e-127, Method: Compositional matrix adjust. Identities = 227/417 (54%), Positives = 308/417 (73%), Gaps = 3/417 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +N+ +L EL L + + N ++M K ++ FAIL++ +S F +G+LE+L D Sbjct: 23 INMAKLNEMTRKELYELARKLEISNYSKMTKSELKFAILRKQTESIGYFFYEGILEVLPD 82 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G+GFLRS D+S L G DDIYVS SQIR+FNL TGD I+G+IRPPKEGER+FALL+V VN Sbjct: 83 GYGFLRSVDNSLLPGTDDIYVSQSQIRKFNLFTGDIIAGQIRPPKEGERFFALLRVEAVN 142 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 PENAR+++ FENLTP + +R+ +E N ++R++DL SPIG GQRGLIVAPP Sbjct: 143 SLPPENARDRVSFENLTPEYPKTRMVLEHKNAP---YSSRIIDLFSPIGFGQRGLIVAPP 199 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 KAGKT LL++IA SIA N+PD +LLIDERPEEVT+++ V V+A+ FD + Sbjct: 200 KAGKTTLLKDIANSIAENYPDTRRYILLIDERPEEVTDIRDTVDANVIAAPFDMDPENQI 259 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 ++AEM +E KRLVE DV++L+DS+TR+AR YN VP+SGK+L+GG+D A+ PK+F Sbjct: 260 RIAEMALEHFKRLVEFGHDVVVLVDSLTRVAREYNLYVPSSGKLLSGGLDPAAVIFPKKF 319 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAAR + EGGSLTI+ATALI+TGSKMDEVI+EEFKGTGNMEL L+R+++ +R+FPAI+ Sbjct: 320 FGAARKIREGGSLTILATALIETGSKMDEVIFEEFKGTGNMELVLAREMSNERIFPAINL 379 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 SGTRKEELL + +E++ ILRK I+ M +A+EF+++ L KTND+ E ++ Sbjct: 380 KLSGTRKEELLYSPDEMKNTIILRKFINDMSPKEALEFILSLLRKHKTNDEIMEAIE 436 >UniRef50_P52157 Transcription termination factor rho n=260 Tax=cellular organisms RepID=RHO_STRLI Length = 707 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/370 (57%), Positives = 286/370 (77%), Gaps = 9/370 (2%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER--- 109 G+L+IL D + F+R+ S YL GP+D+YVS +Q+R+ LR GD ++G +R PKEGER Sbjct: 336 GILDIL-DNYAFIRT--SGYLPGPNDVYVSLAQVRKNGLRKGDHLTGAVRQPKEGERREK 392 Query: 110 YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIG 169 + AL++++ VN PE+ R + F LTPL+ RLR+E G LT R++DL +PIG Sbjct: 393 FNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGV---LTTRIIDLVAPIG 449 Query: 170 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVA 229 +GQRGLIVAPPK GKTM++Q IA +I +N+P+C LMV+L+DERPEEVT+MQR VKGEV++ Sbjct: 450 KGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVIS 509 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGV 289 STFD PA H VAE+ IE+AKRLVE DV++LLDSITRL RAYN PASG++L+GGV Sbjct: 510 STFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGV 569 Query: 290 DANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 349 D+ AL+ PKRFFGAARN+E+GGSLTI+ATAL+DTGS+MDEVI+EEFKGTGN EL L RK+ Sbjct: 570 DSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNAELKLDRKL 629 Query: 350 AEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 A+KR+FPA+D + SGTRKEE+L +EL W LR+++H + + A+E L++K+ TK+N Sbjct: 630 ADKRIFPAVDVDASGTRKEEILLGSDELAITWKLRRVLHALDQQQAIELLLDKMKQTKSN 689 Query: 410 DDFFEMMKRS 419 +F ++++ Sbjct: 690 AEFLIQIQKT 699 >UniRef50_C2MD13 Transcription termination factor Rho n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MD13_9PORP Length = 618 Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/366 (57%), Positives = 279/366 (76%), Gaps = 2/366 (0%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFA 112 G+LE+ QDG+GFLRS+D +Y PDDIYV I++++L+TGD I G IRPPK E+YF Sbjct: 251 GLLEVAQDGYGFLRSSDYNYFPSPDDIYVPGDMIKKWHLKTGDVIEGSIRPPKGSEKYFL 310 Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRME-RGNGSTEDLTA-RVLDLASPIGR 170 L + VN P++ +++ F+ LTPL + ++E +G + D TA R++DL +PIG+ Sbjct: 311 LQNILLVNGRHPKDNLDRVSFDMLTPLFPEEKFKLESQGIAAVYDKTAMRIVDLVTPIGK 370 Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAS 230 GQRGLIVA PK GKTMLL++IA +I+ NHP+ +++LLIDERPEEVT+M R V EVVAS Sbjct: 371 GQRGLIVAQPKTGKTMLLKDIANAISANHPEVYMIILLIDERPEEVTDMARNVNAEVVAS 430 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVD 290 TFDEPA HV++AE+V+ KAK +VE DV+I+LDSITRLARAYNTV P SGK+L+GG++ Sbjct: 431 TFDEPADHHVKLAELVLAKAKSMVESGHDVLIMLDSITRLARAYNTVQPTSGKILSGGIE 490 Query: 291 ANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA 350 ANAL +PKRFFGAARN+E GGSLTI+ATAL +TGSKMD+VI+EEFKG GNMEL L R+++ Sbjct: 491 ANALQKPKRFFGAARNIEHGGSLTILATALTETGSKMDDVIFEEFKGAGNMELQLDRRLS 550 Query: 351 EKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 KR+FPAID S TR+++LL LQ+MWILR + M ++AMEFL ++ +T+TN Sbjct: 551 NKRIFPAIDILASSTRRDDLLLDSTTLQRMWILRNHLSDMNTVEAMEFLKQRIELTETNL 610 Query: 411 DFFEMM 416 +F M Sbjct: 611 EFLASM 616 >UniRef50_D1VSG2 Transcription termination factor Rho n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSG2_9FIRM Length = 586 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/360 (59%), Positives = 275/360 (76%), Gaps = 5/360 (1%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFA 112 G+LE+ QDG+GFLR S++L DIYVSPSQIRRF LR GD I G +RP K+GE Y Sbjct: 221 GILELHQDGYGFLRV--SNFLPSEGDIYVSPSQIRRFRLRNGDKILGIVRPSKDGESYNG 278 Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ 172 L+ +NEVN KP A N+ FENLTP++ +++ME +D+ RV+DL P+G+GQ Sbjct: 279 LIYINEVNDKKPNLATNRPYFENLTPIYPREKIKME---FDPKDIATRVIDLICPVGKGQ 335 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTF 232 RGLIV+PPK+GKT LL+ IA+SI N+P+ L VLLIDERPEEVT+MQR VKG+VV STF Sbjct: 336 RGLIVSPPKSGKTTLLKKIAKSIEKNYPEIELFVLLIDERPEEVTDMQRSVKGQVVYSTF 395 Query: 233 DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDAN 292 DE H +VAEMV+++AKRLVE KDV+ILLDS+TRL+RAYN + P+SGK L+GG+D Sbjct: 396 DETPKNHTRVAEMVLDRAKRLVEQGKDVVILLDSLTRLSRAYNLITPSSGKTLSGGLDPL 455 Query: 293 ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 +LH+PKRFFGAARN+EEGGSLTI+ATAL++TGS+MD++I+EEFKGTGNMELHL RK++EK Sbjct: 456 SLHKPKRFFGAARNIEEGGSLTILATALVETGSRMDDIIFEEFKGTGNMELHLDRKLSEK 515 Query: 353 RVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDF 412 R+FPAID +SGTRKEELL Q+EL + +R + + E L++++ T N F Sbjct: 516 RIFPAIDIYKSGTRKEELLLNQDELNFAFNIRNAMSYNSSNEVTEVLLDEMTKTINNKTF 575 >UniRef50_Q1AVG2 Transcription termination factor Rho n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVG2_RUBXD Length = 498 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/373 (56%), Positives = 282/373 (75%), Gaps = 6/373 (1%) Query: 47 EDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKE 106 E + GVL++L DGFGFLR+ S Y +D+Y+S SQI+RFNLR GD I G+IRP + Sbjct: 128 ESLVQSGVLDVLPDGFGFLRT--SGYSQSKNDVYISTSQIKRFNLRRGDYIVGQIRPARN 185 Query: 107 GERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAS 166 GE+Y A++++ +N + + R + F++LTPL+ RLR+E D+ RV+DL + Sbjct: 186 GEKYPAMVRIETINGREAQKGRWRPNFDDLTPLYPMERLRLE---WKPNDIAPRVIDLVA 242 Query: 167 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK-G 225 PIG+GQRGLIV+PPKAGKT +L+ IAQSIA N+P+ L VLL DERPEEVT+ +R V+ Sbjct: 243 PIGKGQRGLIVSPPKAGKTTILKQIAQSIAANYPEVRLFVLLADERPEEVTDWERSVREA 302 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 EVVASTFD+PA H+ VAE+V+E+ KRLVE +DV++LLDSITRLARAYN PASG++L Sbjct: 303 EVVASTFDQPAENHIAVAELVLERVKRLVEEGEDVVVLLDSITRLARAYNLAAPASGRIL 362 Query: 286 TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 +GGVD+ AL+ PK+FFGAARN+E GGSLTI+A+ALIDTGS+MDEVIYEEFKGTGNME+HL Sbjct: 363 SGGVDSAALYPPKKFFGAARNIENGGSLTILASALIDTGSRMDEVIYEEFKGTGNMEIHL 422 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 RK+A +R++PAI+ SGTRKEELL E Q++W +R I++ + +E LI KL Sbjct: 423 DRKLANRRIYPAINIEDSGTRKEELLMEPAEAQRVWQVRNILNALDTAAKIELLIQKLKE 482 Query: 406 TKTNDDFFEMMKR 418 T+TN +F ++R Sbjct: 483 TRTNAEFLRQLQR 495 >UniRef50_B1R2H4 Transcription termination factor Rho n=3 Tax=Clostridiales RepID=B1R2H4_CLOBU Length = 511 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 212/369 (57%), Positives = 285/369 (77%), Gaps = 6/369 (1%) Query: 53 GVLEILQDG-FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYF 111 G+LEIL++ FGFLR + YL +DIYVSPSQIRRFNLRTGD + GKIR KE E++ Sbjct: 143 GILEILENNNFGFLRCKN--YLTSSEDIYVSPSQIRRFNLRTGDEVEGKIREAKESEKFK 200 Query: 112 ALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG 171 ALL V +VN + PE A + FE LTP++ RL++E N DL++R++D+ P+G+G Sbjct: 201 ALLFVQKVNGEAPEKAIGRKSFETLTPIYPTERLKLETQNSG--DLSSRLMDIICPLGKG 258 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAST 231 QRG+IVAPPKAGKT LL+ +AQ+I N+PD L+VLLIDERPEEVT+M R + G+VV ST Sbjct: 259 QRGVIVAPPKAGKTTLLKKVAQNIVKNYPDIKLIVLLIDERPEEVTDMIRSINGDVVYST 318 Query: 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDA 291 FDE H +V++MV+E+AKR+VE KDV+IL+DSITRL+RAYN + +G+ L+GG+D Sbjct: 319 FDEEPQNHAKVSQMVLERAKRMVEQGKDVVILMDSITRLSRAYNLTITPTGRTLSGGLDP 378 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 AL PK+FFGAARN+EEGGSLTI+ATAL++TGS+MD++I+EEFKGTGNME+HL R++ E Sbjct: 379 GALIMPKKFFGAARNIEEGGSLTILATALVETGSRMDDMIFEEFKGTGNMEVHLDRRLQE 438 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEI-DAMEFLINKLAMTKTND 410 +R+FPAID +SGTRKE+LL ++EEL+ + +RKI++ G D E LIN L+ TK N+ Sbjct: 439 RRIFPAIDVYKSGTRKEDLLLSKEELEVAFSIRKIMYKDGNADDVTENLINMLSKTKNNE 498 Query: 411 DFFEMMKRS 419 +F E K++ Sbjct: 499 EFIETFKKN 507 >UniRef50_C9XS91 Transcription termination factor Rho n=16 Tax=Bacteria RepID=C9XS91_CLODC Length = 534 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 209/365 (57%), Positives = 278/365 (76%), Gaps = 5/365 (1%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFA 112 GVLEIL DGFGFLR S+YL+ D+YVSPSQIRRFN++TGD I G R PK GE++ A Sbjct: 173 GVLEILPDGFGFLRG--SNYLSTEGDVYVSPSQIRRFNMKTGDKIKGITRHPKSGEKFRA 230 Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ 172 LL V ++N + P+ A + FE LTP+ RL +E ++ R++DL SPIG+GQ Sbjct: 231 LLYVQKINDENPDTAIQRNAFETLTPIFPEERLTLETNRN---EIATRIIDLISPIGKGQ 287 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTF 232 RGLIVAPPKAGKT+LL+++A SIA NHP+ L+VLLIDERPEEVT+M+ ++G+V+ STF Sbjct: 288 RGLIVAPPKAGKTVLLKSVANSIAKNHPNVELIVLLIDERPEEVTDMKESIEGDVIYSTF 347 Query: 233 DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDAN 292 D+ +S HV+VAEMV+ +A+RLVEH KDV+ILLDSITRLARAYN + +G+ L+GG+D Sbjct: 348 DQVSSHHVKVAEMVLNRAQRLVEHGKDVVILLDSITRLARAYNLTISPTGRTLSGGIDPG 407 Query: 293 ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 ALH PK+FFGAARN+ +GGSLTI+ TAL++TGS+MD+VI+EEFKGTGNMELHL RK+AEK Sbjct: 408 ALHGPKKFFGAARNIRQGGSLTILGTALVETGSRMDDVIFEEFKGTGNMELHLDRKLAEK 467 Query: 353 RVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDF 412 R+FPAID +SGTR+++LL EE +W LR+ + ++ + +I + TK N +F Sbjct: 468 RIFPAIDIYKSGTRRDDLLLDDEEKTALWRLRREMSNNSVMEITDKVIELIKRTKDNKEF 527 Query: 413 FEMMK 417 + +K Sbjct: 528 VKSIK 532 >UniRef50_Q0TNA5 Transcription termination factor Rho n=24 Tax=Bacteria RepID=Q0TNA5_CLOP1 Length = 489 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 211/369 (57%), Positives = 283/369 (76%), Gaps = 6/369 (1%) Query: 53 GVLEIL-QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYF 111 G+LEIL + FGFLR + YL DDIYVSPSQIRRF LRTGD + GK+R PK+GE++ Sbjct: 121 GILEILDNNNFGFLRCRN--YLTSEDDIYVSPSQIRRFGLRTGDEVQGKVRIPKDGEKFK 178 Query: 112 ALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG 171 ALL V VN + PE A + FE LTP++ RLR+E NG DL++R++D+ PIG+G Sbjct: 179 ALLYVERVNGESPEKAVGRKKFEELTPIYPKERLRLETENG--RDLSSRLMDIICPIGKG 236 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAST 231 QRG+IVAPPKAGKT LL+ IAQ+I+ N+P+ L+VLLIDERPEEVT+M+R + GEV+ ST Sbjct: 237 QRGMIVAPPKAGKTTLLKRIAQNISKNNPEVKLIVLLIDERPEEVTDMKRSIDGEVIYST 296 Query: 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDA 291 FDE H +V+ +V+E+AKR+VE +DV+IL+DS+TRL+RAYN V SG+ L+GG+D Sbjct: 297 FDEEPQNHAKVSSIVLERAKRMVEQGRDVVILMDSLTRLSRAYNLTVTPSGRTLSGGLDP 356 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 AL PK+FFGAARN+EEGGSLTI+AT+L+DTGS+MD++I+EEFKGTGNME+HL RK+ E Sbjct: 357 GALIMPKKFFGAARNLEEGGSLTILATSLVDTGSRMDDMIFEEFKGTGNMEVHLDRKLQE 416 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEI-DAMEFLINKLAMTKTND 410 +R+FPAID +SGTRKE+LL +EE + + +R+++ I D E LIN L+ TK N Sbjct: 417 RRIFPAIDIYKSGTRKEDLLFNEEEREASYKIRRVLQKENNIEDVAEKLINLLSKTKNNK 476 Query: 411 DFFEMMKRS 419 +F +++ +S Sbjct: 477 EFLQVVLKS 485 >UniRef50_A7BDQ9 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDQ9_9ACTO Length = 616 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 211/383 (55%), Positives = 295/383 (77%), Gaps = 12/383 (3%) Query: 43 AKSGEDIFGD--GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK 100 A+ GED G+L+I Q+ F+R+ S YL GP+D+YV+ +RR+ LR GD ++G Sbjct: 236 ARGGEDNLAPIAGILDI-QENHAFVRT--SGYLPGPNDVYVTLGNVRRWGLRAGDAVAGA 292 Query: 101 IRPPKEGER----YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED 156 +R P+EGER Y AL++V+ VN E A+ + F LTP++ + +LRME S + Sbjct: 293 VRLPREGERQRQKYNALVRVDSVNGMTIEQAQARREFGKLTPVYPSEQLRMET---SPKA 349 Query: 157 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV 216 T RV+DL +P+G+GQRGLIV+PPKAGKTM++Q +A++I N+P+ LMV+L+DERPEEV Sbjct: 350 YTPRVIDLVAPVGKGQRGLIVSPPKAGKTMVIQQMAKAIELNNPEVHLMVVLVDERPEEV 409 Query: 217 TEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT 276 T+M+ +VKGEV+ASTFD PAS H VAE+ IE+AKRLVE +DV++LLDS+TRL+RAYN Sbjct: 410 TDMRSIVKGEVIASTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSLTRLSRAYNL 469 Query: 277 VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFK 336 PASG++L+GGVDA+AL+ PK+FFGAARN+ EGGSLTIIA+AL++TGSKMDEVI+EEFK Sbjct: 470 AAPASGRILSGGVDASALYPPKKFFGAARNISEGGSLTIIASALVETGSKMDEVIFEEFK 529 Query: 337 GTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 GTGNMEL LSR++AE+R+FPAID N SGTR+EELL EEL+ MW LR+++ + + + Sbjct: 530 GTGNMELRLSRQLAERRIFPAIDLNASGTRREELLFKPEELRIMWRLRRVLGTLDQQQGL 589 Query: 397 EFLINKLAMTKTNDDFFEMMKRS 419 E +++KL T++N +F +++++ Sbjct: 590 ELVLDKLKETQSNAEFLMLIQKT 612 >UniRef50_B8DWV6 Transcription termination factor Rho n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=B8DWV6_BIFA0 Length = 676 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/370 (55%), Positives = 279/370 (75%), Gaps = 12/370 (3%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER--- 109 G++++L D + F+R+ S YL GP+DIYVS QI+++ LR GD + G R P EGER Sbjct: 299 GIVDVL-DSYAFIRT--SGYLPGPNDIYVSMGQIKKYGLRKGDAVRGYTRAPHEGERRNQ 355 Query: 110 ---YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAS 166 + L + +N E A+++ F LTPL+ + RLRME + + R++D+ S Sbjct: 356 RQKFMPLQSITLINGLSVEEAQDRPNFSKLTPLYPDERLRMET---TPNRIIGRLIDIVS 412 Query: 167 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE 226 PIG+GQRGLIV+PPKAGKT+ LQNIA +IA N+P+ LMV+L+DERPEEVT+M+R VKGE Sbjct: 413 PIGKGQRGLIVSPPKAGKTITLQNIANAIAVNNPEVHLMVVLVDERPEEVTDMERTVKGE 472 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT 286 +++STFD PAS H VAE+ IE+AKRLVE +DV++LLDS+TRLARAYN PASG++L+ Sbjct: 473 IISSTFDRPASDHTIVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASGRILS 532 Query: 287 GGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 GGVDA AL+ PK+FFGAARN+E GGSLTII++AL++TGSKMDEVI+EEFKGTGNMEL LS Sbjct: 533 GGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLS 592 Query: 347 RKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMT 406 R++A+KR+FPA+D N SGTR+EEL+T +EL ++ LR+++ + A + L+ +L T Sbjct: 593 RELADKRLFPAVDINASGTRREELITNPQELPVLYSLRRLLGGLEPEQAYQTLVPRLKKT 652 Query: 407 KTNDDFFEMM 416 TN DFF+ + Sbjct: 653 MTNADFFKAI 662 >UniRef50_P52153 Transcription termination factor rho n=16 Tax=Bacteria RepID=RHO_DEIRA Length = 426 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 215/420 (51%), Positives = 296/420 (70%), Gaps = 10/420 (2%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 + EL+ + EL L +G+EN +++K + AI+++ A + G L+I D Sbjct: 11 LPFQELQEKILPELHLLAAGLGIENYRKLKKDALALAIMEKQADAEGQSLARGYLDITSD 70 Query: 61 GFGFLRSADSSYLAGPDD--IYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNE 118 G+GFL++ L P + V+ I++++LRTGD + G+ R P+E ERY +L++V Sbjct: 71 GYGFLQAD----LLDPASRSVLVTAGVIKQYHLRTGDEVIGRARKPRENERYGSLVRVEA 126 Query: 119 VNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED-LTARVLDLASPIGRGQRGLIV 177 VN PE AR + F++LTP + +L +E + ST+D L+ RV+DL PIGRGQR LIV Sbjct: 127 VNGLDPEAARQRPRFDDLTPTFPDQQLVLE--DPSTDDGLSLRVVDLLVPIGRGQRALIV 184 Query: 178 APPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-EVVASTFDEPA 236 APPKAGKT LL+ IA SI N+PD +MVLL+DERPEEVT+ + V+G +V+ASTFDEP Sbjct: 185 APPKAGKTTLLKKIANSITKNYPDVTVMVLLVDERPEEVTDFRESVQGAQVIASTFDEPP 244 Query: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296 HV+VAE V E+A+R+VE V+ILLDSITRLARA N V P +G+ L+GG+D+NALH Sbjct: 245 QHHVRVAEFVHERARRIVEEGGHVVILLDSITRLARANNLVTPPTGRTLSGGLDSNALHW 304 Query: 297 PKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 356 PKRF GAARN+ EGGSLTI+ATAL++TGS+MD+VI+EEFKGTGN EL LSR++ E+R+FP Sbjct: 305 PKRFLGAARNIREGGSLTILATALVETGSRMDDVIFEEFKGTGNAELVLSRRLEERRIFP 364 Query: 357 AIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 A+D +SGTR+EELL E L+KMW+LRK+I M DAME L+ ++ T+ N +F + Sbjct: 365 ALDILKSGTRREELLLQPEVLKKMWLLRKVISDMDPADAMEMLLGRMGKTRNNVEFLAAL 424 >UniRef50_C9RLJ9 Transcription termination factor Rho n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLJ9_FIBSS Length = 689 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 211/426 (49%), Positives = 287/426 (67%), Gaps = 36/426 (8%) Query: 25 NLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPS 84 + RMRKQ + + IL+ G I+ +GVLE+ G GFLR D +Y DD+YVS + Sbjct: 265 DFRRMRKQSLNY-ILQSLENEGNIIYTEGVLEVTPQGHGFLRMPDQNYQTSADDVYVSQN 323 Query: 85 QIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSR 144 IR+FNL+ GDTI G +R P++ ++YF++ +++ VNF++P+ R ++ FE LTP+H + Sbjct: 324 LIRKFNLKIGDTIEGLVRTPRDQDKYFSMRRIDRVNFEEPDKMRRRVAFEYLTPIHPEEK 383 Query: 145 LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL 204 + +E + + + R++DL SPIG+GQR +I+APP+ GKT+LLQN+ ++IA NHP+ +L Sbjct: 384 IHLE---WNETEYSTRIMDLFSPIGKGQRSIILAPPRTGKTVLLQNVTRAIAKNHPEIIL 440 Query: 205 MVLLIDERPEEVTEMQRLV--------------KGEVVASTFDEPASRHVQVAEMVIEKA 250 + LLIDERPEEVTEM+ ++ K EVVASTFDEP H +VA MV+EKA Sbjct: 441 ITLLIDERPEEVTEMRDIITDIKEKAAEKGIEIKAEVVASTFDEPPEHHTRVANMVLEKA 500 Query: 251 KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARN---- 306 KRLVE +KDV+ILLDSITR ARA N V+P SGK+L+GGVDANA+ PK+FFGAAR Sbjct: 501 KRLVESQKDVVILLDSITRFARANNVVIPHSGKILSGGVDANAMQFPKKFFGAARKIQDK 560 Query: 307 --------------VEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 V++ GSLTII TALI+TGS+MDEVI+EEFKGTGNMEL L R+IAEK Sbjct: 561 IRTVKNEDGTISEEVQKNGSLTIIGTALIETGSRMDEVIFEEFKGTGNMELVLDRRIAEK 620 Query: 353 RVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDF 412 R++PAID +SGTRKEE L T E W R+ E ME L+ ++ KTN + Sbjct: 621 RIWPAIDVFKSGTRKEERLLTLLEQNAAWNFRRGSQNETETGIMENLLKLMSKLKTNAEL 680 Query: 413 FEMMKR 418 ++ + Sbjct: 681 LAVLSK 686 >UniRef50_C2CU97 Transcription termination factor Rho n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CU97_GARVA Length = 695 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 202/367 (55%), Positives = 277/367 (75%), Gaps = 12/367 (3%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER--- 109 G++++L+ + F+R+ S YL GP+D+YVS SQI+++ LR GD + G IR P+EG+R Sbjct: 315 GIVDVLE-SYAFVRT--SGYLPGPNDVYVSMSQIKKYGLRKGDAVQGSIRAPREGDRRNQ 371 Query: 110 ---YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAS 166 + L V+ +N E+A+N+ F LTPL+ RL+ E + + R++DL + Sbjct: 372 RQKFVPLQSVDSINGMSVEDAQNRPQFAKLTPLYPQERLKQE---TTPNRMLGRIIDLVA 428 Query: 167 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE 226 PIG+GQRGLIV+PPKAGKT+ LQNIA +IA N+P+ LMV+L+DERPEEVT+M+R V+GE Sbjct: 429 PIGKGQRGLIVSPPKAGKTITLQNIANAIAVNNPEVHLMVVLVDERPEEVTDMERTVQGE 488 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT 286 V++STFD PAS H VAE+ IE+AKRLVE +DV++LLDS+TRLARAYN PASG++L+ Sbjct: 489 VISSTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASGRILS 548 Query: 287 GGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 GGVDA AL+ PK+FFGAARN+E GGSLTII++AL++TGSKMDEVI+EEFKGTGNMEL LS Sbjct: 549 GGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLS 608 Query: 347 RKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMT 406 R +A+KR+FPA+D N SGTR+EEL+T +EL ++ LR++ + A + L+ +L T Sbjct: 609 RDLADKRLFPAVDINSSGTRREELITPAQELPIIYRLRRLFGGLEPEQAYQTLVPRLKKT 668 Query: 407 KTNDDFF 413 +N DF Sbjct: 669 ASNRDFL 675 >UniRef50_C5RGE3 Transcription termination factor Rho n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGE3_CLOCL Length = 483 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 209/368 (56%), Positives = 278/368 (75%), Gaps = 10/368 (2%) Query: 53 GVLEILQ-DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYF 111 GVLEI + + FGFLR+ + +++ +DIYVSPSQIRRFNLRTGD + GK+R PKEGE++ Sbjct: 119 GVLEINESNNFGFLRAGN--FVSTSEDIYVSPSQIRRFNLRTGDEVEGKVREPKEGEKFK 176 Query: 112 ALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG 171 AL V +VN + PE A +I FE L P++ +RL++E + +L+ R++D PIG+G Sbjct: 177 ALRFVEKVNGENPEKAIGRIPFEKLIPIYPENRLKLE---TKSSELSTRLMDFICPIGKG 233 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAST 231 QRGLIVAPPKAGKT LL+N+A SI NHP+ L+V+LIDERPEEVTEMQR +KGEVV ST Sbjct: 234 QRGLIVAPPKAGKTTLLKNVANSITENHPEVKLIVVLIDERPEEVTEMQRSIKGEVVYST 293 Query: 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDA 291 FD+ H+++A MV+E+AKR+VE K DV+ILLDS+TRL RA N V +G+ L+GG+D Sbjct: 294 FDQETESHIRIANMVLERAKRMVEQKLDVVILLDSLTRLTRANNLRVDPTGRTLSGGLDP 353 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 ALH PKR FGAARNVE GGSLTI++T L++TGS+MD+VI+EEFKGTGNME+HL RK+ E Sbjct: 354 AALHLPKRLFGAARNVENGGSLTILSTVLVETGSRMDDVIFEEFKGTGNMEVHLDRKLQE 413 Query: 352 KRVFPAIDYNRSGTRKEE-LLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 +R+FPAID +SGTRKEE LL+T E + + RK+ + E ++N L+ T++ND Sbjct: 414 RRIFPAIDIYKSGTRKEEYLLSTDERNAAINVRRKLYNENNPQAVTEMVLNILSETESND 473 Query: 411 DFFEMMKR 418 E++KR Sbjct: 474 ---ELIKR 478 >UniRef50_P45835 Transcription termination factor rho n=20 Tax=Actinomycetales RepID=RHO_MYCLE Length = 610 Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust. Identities = 207/374 (55%), Positives = 278/374 (74%), Gaps = 14/374 (3%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGE---- 108 G+L++L D + F+R+ S YLAGP D+YVS S +R+ LR GD ++G +R P+EGE Sbjct: 236 GILDVL-DNYAFVRT--SGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQ 292 Query: 109 --RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED-LTARVLDLA 165 ++ L++++ +N E+A+ + F LTPL+ N RLR+E +T D LT RV+DL Sbjct: 293 RQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLE----TTPDRLTTRVIDLI 348 Query: 166 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG 225 PIG+GQR LIV+PPKAGKT +LQ+IA +I N+ +C LMV+L+DERPEEVT+MQR VKG Sbjct: 349 MPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKG 408 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 EV+ASTFD P S H VAE+ IE+AKRLVE KDV++LLDSITRL RAYN PASG++L Sbjct: 409 EVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRIL 468 Query: 286 TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 +GGVD+ AL+ PKRF GAARN+EEGGSLTIIATA+++TGS D VI+EEFKGTGN EL L Sbjct: 469 SGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKL 528 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 RKIAE+RVFPA+D N SGTRK+ELL + +E + LR+++ + A++ L+++L Sbjct: 529 DRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRK 588 Query: 406 TKTNDDFFEMMKRS 419 TKTN +F + ++ Sbjct: 589 TKTNYEFLVQVSKT 602 >UniRef50_C7M177 Transcription termination factor Rho n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M177_ACIFD Length = 594 Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/372 (55%), Positives = 278/372 (74%), Gaps = 9/372 (2%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFA 112 GVL++ +G+GFLR+ + L D YV S +R+F LR GD I G+ R + E++ A Sbjct: 224 GVLDLRDEGYGFLRA--NGRLTSSRDTYVPASLVRKFGLRKGDQIVGQARASSQNEKFPA 281 Query: 113 LLKVNEVNFDKP-ENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG 171 L++V V FD E+AR + FE+LTPL + RL +E E LT R++DL +PIG+G Sbjct: 282 LVRVERV-FDMTVEDARRRPRFEDLTPLFPDERLVLENAEDPLE-LTTRIMDLVAPIGKG 339 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAST 231 QRGLIV+PPKAGKT +++ IA +I N+P+ VL VLL+DERPEEVT+++R VKGEV+AST Sbjct: 340 QRGLIVSPPKAGKTTVMKQIAHAIERNNPEVVLFVLLVDERPEEVTDIRRSVKGEVIAST 399 Query: 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDA 291 FD PA H QVAE+VIE+AKRLVE DV+I+LD ITRLARAYN PASG++++GGVD+ Sbjct: 400 FDRPAEEHTQVAELVIERAKRLVELGHDVVIILDGITRLARAYNLAQPASGRIMSGGVDS 459 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 AL+ PK+FFGAARNVEEGGSLTI+ATAL++TGSKMDEVI+EEFKGTGNMEL L R++AE Sbjct: 460 GALYPPKKFFGAARNVEEGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLDRRLAE 519 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE----IDAMEFLINKLAMTK 407 +R+FPAID N S TR EELL T++EL ++W LR+++ + + +E LI+K+ T+ Sbjct: 520 RRLFPAIDVNASSTRHEELLFTRDELAQVWKLRRVLGAISQEGTPAAGLELLIDKIRSTR 579 Query: 408 TNDDFFEMMKRS 419 +N +F + RS Sbjct: 580 SNAEFLAEIARS 591 >UniRef50_C4GAL5 Putative uncharacterized protein n=2 Tax=Bacteria RepID=C4GAL5_9FIRM Length = 679 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/395 (51%), Positives = 284/395 (71%), Gaps = 9/395 (2%) Query: 28 RMRKQDIIFAILKQHAKSGEDIF-GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQI 86 R ++++ A+ Q A+ D DG+LEI+ DG+GFL + ++L G DD YV+PSQI Sbjct: 286 RPHREEVSDAVSPQLAEQMSDASEADGILEIMPDGYGFLHT--DNFLTGEDDAYVAPSQI 343 Query: 87 RRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLR 146 RRF ++TGD + G + +++ ALL++N +N PE R + FENLTP+ RLR Sbjct: 344 RRFAMKTGDRVEGLKKRNNPTDKFAALLRINSINGRNPEELRGRQSFENLTPIFPRERLR 403 Query: 147 MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV 206 +ER S + +RV+DL +PIG+GQRGLIV+PPKAGKT LL+ +A+S+ NHP+ +M+ Sbjct: 404 LERKGSS---VASRVIDLIAPIGKGQRGLIVSPPKAGKTTLLKEVAKSVQENHPEMHMMI 460 Query: 207 LLIDERPEEVTEMQRLVKG---EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 LLIDERPEEVT+M+ + G E++ STFD+ H +V+EMVIE+AKRLVE +DVIIL Sbjct: 461 LLIDERPEEVTDMKETIVGDNVEIIYSTFDQMPDHHTKVSEMVIERAKRLVEQGEDVIIL 520 Query: 264 LDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDT 323 LDSITRLARAYN V +SG++L+GG+D AL+ PKRFFGAARN+ EGGSLT++ATAL+DT Sbjct: 521 LDSITRLARAYNLTVTSSGRILSGGLDTAALYMPKRFFGAARNMREGGSLTVLATALVDT 580 Query: 324 GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWIL 383 GS+MD+V+YEEFKGTGNMEL L R+++E+R+FPA+D SGTR+E+LL +E++ I+ Sbjct: 581 GSRMDDVVYEEFKGTGNMELILDRRLSERRIFPAVDIVASGTRREDLLLDADEMEAARIM 640 Query: 384 RKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 + I+ + E L+N A TK N DF + R Sbjct: 641 HRGINGRRAEENTEDLLNMFAHTKDNKDFIRQLLR 675 >UniRef50_A9KHD0 Transcription termination factor Rho n=13 Tax=Clostridiales RepID=A9KHD0_CLOPH Length = 650 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 204/397 (51%), Positives = 286/397 (72%), Gaps = 10/397 (2%) Query: 26 LARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQ 85 L++ +Q+ I + SGE +G+LE+L DG+GF+R ++L G +D+YVSP+Q Sbjct: 259 LSQANQQEEKLPIDMEQLDSGE--TKEGILEVLSDGYGFIRC--DNFLPGENDVYVSPAQ 314 Query: 86 IRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRL 145 IRRFNL+TGD I G R + E++ ALL + +N P A + FE+LTP+ N R+ Sbjct: 315 IRRFNLKTGDIIVGNTRIRNQNEKFSALLYIKLINGLHPSEAVKRKKFEDLTPIFPNERI 374 Query: 146 RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 205 +E + R++DL SPIG+GQRG+IV+ PK GKT LL+ +A++I NHP+ L+ Sbjct: 375 HLETPGCQ---VAMRMVDLISPIGKGQRGMIVSQPKTGKTTLLKQVAKAITRNHPEMHLI 431 Query: 206 VLLIDERPEEVTEMQRLVKG---EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 +LLIDERPEEVT+++ ++G EV+ STFDE H +V+EMVIE+AKRLVEHKKDV+I Sbjct: 432 ILLIDERPEEVTDIKESIEGGNVEVIYSTFDELPENHKRVSEMVIERAKRLVEHKKDVVI 491 Query: 263 LLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALID 322 LLDSITRLARAYN V ASG+ L+GG+D ALH PK+FFGAARN+ EGGSLTI+ATAL++ Sbjct: 492 LLDSITRLARAYNLTVQASGRTLSGGLDPAALHMPKKFFGAARNMREGGSLTILATALVE 551 Query: 323 TGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWI 382 TGS+MD+V++EEFKGTGNMEL L R ++EKR+FPAID +S TR+++LL E++ ++ Sbjct: 552 TGSRMDDVVFEEFKGTGNMELVLDRNLSEKRIFPAIDLPKSSTRRDDLLLNSAEVEANYL 611 Query: 383 LRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419 +RK ++ + DA+E +I TK N +F EM+K++ Sbjct: 612 MRKALNGLKSEDAVERIIQMFVNTKNNAEFVEMIKKT 648 >UniRef50_C2D7C6 Possible transcription termination factor Rho n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7C6_9ACTN Length = 720 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/410 (51%), Positives = 284/410 (69%), Gaps = 8/410 (1%) Query: 5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGF 64 +L V+EL + +GLE + +RK+ +I I + A S GVL+I DG+GF Sbjct: 299 QLSTMKVAELRAKAQELGLET-SGVRKKVLIEQIYRAAAASEGFASIQGVLDIQPDGYGF 357 Query: 65 LRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKP 124 +R+ + Y++G +D +V IR++ LR GD I G++ P + ++ L K+ ++N P Sbjct: 358 IRTGN--YMSGDNDAFVHQQLIRQYGLRPGDWIDGRVSPSRNN-KFPPLHKIVQINGKTP 414 Query: 125 ENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGK 184 E R + F +LTP++ + RL ME G S +T R +DL +PIG+GQRGLIV+PPKAGK Sbjct: 415 EEIRKRPRFRDLTPVYPDERLIMENGQQS---ITGRAIDLVAPIGKGQRGLIVSPPKAGK 471 Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAE 244 T +L+ I QSI N+P+ L LL+DERPEEVT+MQR +KG VVASTFD PA H V+E Sbjct: 472 TTILKKICQSITANNPEVHLFCLLVDERPEEVTDMQRSIKGTVVASTFDMPAENHTSVSE 531 Query: 245 MVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAA 304 +VIE AKRLVE +DV+++LDSITRLARAYN PASG+VL+GGVD+ AL+ PK+F GAA Sbjct: 532 LVIEHAKRLVELGQDVVVVLDSITRLARAYNLAQPASGRVLSGGVDSAALYPPKKFLGAA 591 Query: 305 RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 RN+E GGSLTI+A+ALIDTGSKMDEVI+EEFKGTGNMEL L R +A++R+FPAID SG Sbjct: 592 RNIEHGGSLTILASALIDTGSKMDEVIFEEFKGTGNMELKLDRDLADRRIFPAIDPVSSG 651 Query: 365 TRKEELLTTQEELQKMWILRKIIHPMGEID-AMEFLINKLAMTKTNDDFF 413 TR E+LL +E +W LR+++ M + A L+ L TK N+DF Sbjct: 652 TRNEDLLIAKELQPFVWGLRRVLANMNNTERAASALVKGLKETKDNEDFL 701 >UniRef50_C7HUP3 Transcription termination factor Rho n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HUP3_9FIRM Length = 451 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 209/455 (45%), Positives = 305/455 (67%), Gaps = 45/455 (9%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKS--------------- 45 +N+ +L + EL +G+N+ +++L+ RK +++ I + ++ S Sbjct: 3 ININDLDKLKLDELREIGKNLSIKSLSSYRKNELVEIIKEAYSNSKNFENNESSSNDLDD 62 Query: 46 -------GEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIS 98 GE +G+L++ +DGFGFLR+ Y + DDIYVSP Q++ F L+TGD I Sbjct: 63 SNENFDLGEKFNCEGLLDLHEDGFGFLRT--ELYESSNDDIYVSPKQVKMFRLKTGDFIK 120 Query: 99 GKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLT 158 G R K+ +++ L+ V++VN K +A N+ FE+LTP++ N +L++E S + ++ Sbjct: 121 GIARVKKDKDKFSPLIFVSDVNGLKAADAFNRSNFESLTPIYPNQKLKLE---TSKDKIS 177 Query: 159 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE 218 R++D+ +PIGRGQRGLIV+ PKAGKT L+++I ++ N D ++VLLIDERPEEVT+ Sbjct: 178 QRIIDIIAPIGRGQRGLIVSQPKAGKTTLIKDIEYALEKNFDDLKILVLLIDERPEEVTD 237 Query: 219 MQRLV-----------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 267 +R V + EV ASTFD+ H+ + EMV+E+AKRLVE KDV+ILLDSI Sbjct: 238 FKRFVNQYRDKDNELTRTEVAASTFDKAPQNHIYMQEMVLERAKRLVEDNKDVVILLDSI 297 Query: 268 TRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKM 327 TRLARAYN + P SG+ L+GG+D AL PK+FFGAARN+E GGSLTIIATAL+DTGS+M Sbjct: 298 TRLARAYNIMTPQSGRTLSGGLDPLALIGPKKFFGAARNIENGGSLTIIATALVDTGSRM 357 Query: 328 DEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKII 387 D+++YEEFKGTGNMELHL RK+A++R+FPAID +S TRK+ LL + +EL+ ++ LR Sbjct: 358 DDMVYEEFKGTGNMELHLDRKLAQRRIFPAIDIEKSSTRKDNLLLSNKELEAVYKLRNSD 417 Query: 388 HPMGEIDAMEF---LINKLAMTKTNDDFFEMMKRS 419 D M+F LIN +A K+ND+F E++ ++ Sbjct: 418 MK----DKMDFTNELINLMAKCKSNDEFVELINKT 448 >UniRef50_C8WA24 Transcription termination factor Rho n=133 Tax=Bacteria RepID=C8WA24_ATOPD Length = 701 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/410 (50%), Positives = 282/410 (68%), Gaps = 9/410 (2%) Query: 6 LKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFL 65 L+ +SEL +G+E A + K D+I + A + +G+L+I +G+G++ Sbjct: 284 LQEMKLSELRAKATELGIE-YAGVHKSDLIELVYAASAAAEGFKTVEGILQISNEGYGWI 342 Query: 66 RSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPE 125 R+ + Y+ G +D +V IR LR GD++ G + P + +Y LL+V +VN + E Sbjct: 343 RTGN--YMEGDNDAFVHQQIIRNLGLRPGDSVLGMVGPARVNSKYPPLLQVTQVNGGEVE 400 Query: 126 NARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKT 185 +++ F++LTP+ N L ME G S +T R +DL +PIG+GQRGLIV+PPKAGKT Sbjct: 401 GLKDRPRFKDLTPIFPNQPLTMEHGKDS---ITGRAIDLVAPIGKGQRGLIVSPPKAGKT 457 Query: 186 MLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEM 245 +L+ I QSI N+P+ L LL+DERPEEVT+M+R +KG VVASTFD PA H V+E+ Sbjct: 458 TILKRICQSITINNPEVHLFCLLVDERPEEVTDMERSIKGTVVASTFDMPAENHTVVSEL 517 Query: 246 VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAAR 305 VIE+AKRLVE +DV+++LDSITRLARAYN +PASG++L+GGVD+ AL+ PK+F GAAR Sbjct: 518 VIERAKRLVEMGQDVVVILDSITRLARAYNLAIPASGRILSGGVDSAALYPPKKFLGAAR 577 Query: 306 NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT 365 N+E GGSLTIIA+AL+DTGSKMDEVI+EEFKGTGNMEL L R +A++R+FPAID SGT Sbjct: 578 NIESGGSLTIIASALVDTGSKMDEVIFEEFKGTGNMELKLDRDLADRRIFPAIDPVSSGT 637 Query: 366 RKEELLTTQEELQKM-WILRKIIHPMGEID-AMEFLINKLAMTKTNDDFF 413 R E+LL + ELQ M W +R+I+ + A LI+ L T N DF Sbjct: 638 RNEDLL-IKPELQPMVWGVRRILAGFNNTERATTALISGLKQTDNNQDFL 686 >UniRef50_B5JM54 Rho termination factor, RNA-binding domain family n=2 Tax=Verrucomicrobia RepID=B5JM54_9BACT Length = 682 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/419 (49%), Positives = 286/419 (68%), Gaps = 7/419 (1%) Query: 2 NLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGD-GVLEILQD 60 +L ELK P++ + +G E + ++ I A+ K ++ G+ + D G L+ D Sbjct: 268 SLYELKVEPMAAAV---RELGAELEEKCSRKQAIEALYKV-SREGKKVLKDTGFLDTSDD 323 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G G++ + S+Y P+ +YV S IR + L+ G + P+EGER A L++ Sbjct: 324 GHGYIVHSASNYQLKPESVYVPASLIREYGLQRGHELEVLAIAPEEGERCPAALRIVSAM 383 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGST--EDLTARVLDLASPIGRGQRGLIVA 178 PE+ FE+L P + RL +ER + T +D++ R DL +PIG GQRGLIVA Sbjct: 384 GGAPEDLAKVTPFEDLIPYYPTERLVLERPDPGTNKKDVSMRAFDLLTPIGFGQRGLIVA 443 Query: 179 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASR 238 PP+ GKT+LLQ +A SI N D L+VLLIDERPEEVT+ +R VKGEVV+STFDE + Sbjct: 444 PPRTGKTILLQGLAHSIQENWKDTHLIVLLIDERPEEVTDFRRQVKGEVVSSTFDETPTS 503 Query: 239 HVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPK 298 HV AEMV EKA+R+VE K+V+ILLDSITRLARAYN + SGK+++GG++A A+ +PK Sbjct: 504 HVHCAEMVCEKARRMVEQGKNVVILLDSITRLARAYNALASNSGKIMSGGIEATAMQKPK 563 Query: 299 RFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAI 358 RFFG+ARN+E GGSLTI+ +AL+DTGSKMDEVI+EEFKGTGNME+HL R + KRVFPAI Sbjct: 564 RFFGSARNIEGGGSLTIMGSALVDTGSKMDEVIFEEFKGTGNMEIHLDRDLINKRVFPAI 623 Query: 359 DYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 ++ RSGTRKEELL +E++K++ LR+++ + ++AME LI +L +TK N +F +K Sbjct: 624 NFERSGTRKEELLYHPQEMEKVYGLRRVMQGVPGVEAMEMLIKRLKVTKNNIEFLMSLK 682 >UniRef50_B6WAG5 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WAG5_9FIRM Length = 449 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/453 (44%), Positives = 302/453 (66%), Gaps = 43/453 (9%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKS--------------- 45 +++T+L+ + +L +G+ + +++++ RK D+I I + K Sbjct: 3 IDITKLEGLKLDKLREIGKELSIKSVSSYRKNDLIEIIKNTYDKESLDDKNHSDEGYDQN 62 Query: 46 -----GEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK 100 GE +G+L++ +DGFGFLR+ Y + DDIYVSP Q++ F L+TGD I G Sbjct: 63 DNFDLGEKFNCEGLLDLHEDGFGFLRT--ELYESSNDDIYVSPKQVKMFRLKTGDFIKGI 120 Query: 101 IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR 160 R K+ +++ L+ V++VN K +A N+ FE+LTP++ N RL++E S ++++ R Sbjct: 121 ARVKKDKDKFSPLIFVSDVNGLKAADAFNRSNFESLTPIYPNQRLKLE---TSKDNISQR 177 Query: 161 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ 220 ++D+ +PIGRGQRGLIV+ PKAGKT L+++I ++ N D ++VLLIDERPEEVT+ + Sbjct: 178 IIDIIAPIGRGQRGLIVSQPKAGKTTLIKDIEYALEKNFDDLKILVLLIDERPEEVTDFK 237 Query: 221 RLV-----------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 269 R V + EV ASTFD+ H+ + EMV+E+AKRLVE KDV+ILLDSITR Sbjct: 238 RFVNQYRDKDNELTRTEVAASTFDKAPQNHIYMQEMVLERAKRLVEDNKDVVILLDSITR 297 Query: 270 LARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDE 329 LARAYN + P SG+ L+GG+D AL PK+FFGAARN+E GGSLTIIATAL+DTGS+MD+ Sbjct: 298 LARAYNIMTPQSGRTLSGGLDPLALVGPKKFFGAARNIEGGGSLTIIATALVDTGSRMDD 357 Query: 330 VIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHP 389 ++YEEFKGTGNMELHL R +++KR+FPAID +S TRK+ LL +++E+ ++ +R Sbjct: 358 MVYEEFKGTGNMELHLDRNLSQKRIFPAIDIEKSSTRKDNLLLSEKEIDAVYKIRNSSMK 417 Query: 390 MGEIDAMEF---LINKLAMTKTNDDFFEMMKRS 419 D EF LIN + ++N++F +++ ++ Sbjct: 418 ----DKSEFTKELINLMGKCQSNEEFVDIINKT 446 >UniRef50_C4G1L0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1L0_ABIDE Length = 597 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/362 (53%), Positives = 265/362 (73%), Gaps = 7/362 (1%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFA 112 G+LE++ +GFGF+R +YL G +D+YVSP+ IRRFNL+TGD I G R E++ A Sbjct: 224 GILEVMPEGFGFIRC--DNYLPGENDVYVSPAHIRRFNLKTGDIIVGNTRVKSNTEKFAA 281 Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ 172 +L + VN + + + FE+LTP+ N R+R+E + ++ R++DL +PIG+GQ Sbjct: 282 ILYIRTVNGKYIKESLERPKFEDLTPIFPNRRIRLETPGENV--ISMRMVDLIAPIGKGQ 339 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE---VVA 229 RG++V+ PKAGKT LL+ IA++I N+P+ L++LLIDERPEEVT+M+ + GE ++ Sbjct: 340 RGMLVSQPKAGKTTLLKQIARAITENNPEMHLIILLIDERPEEVTDMKDSIMGEKVEIIY 399 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGV 289 STFDE H +V+EMVIE+AKRLVE+KKDVIILLDSITRLARAYN V SG+ L+GG+ Sbjct: 400 STFDEAPENHKRVSEMVIERAKRLVEYKKDVIILLDSITRLARAYNLTVSPSGRTLSGGL 459 Query: 290 DANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 349 D ALH PKRFFGAARN+ EGGSLTI+ATAL+DTGS+MD+V++EEFKGTGNMEL L R + Sbjct: 460 DPAALHMPKRFFGAARNMREGGSLTILATALVDTGSRMDDVVFEEFKGTGNMELVLDRSL 519 Query: 350 AEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 +EKR+FPAID +SGTR+++LL TQ E I+++ + D +E +I +TN Sbjct: 520 SEKRIFPAIDLAKSGTRRDDLLFTQSEADANDIIKRTLSARNVEDGVENIIKIFKTFETN 579 Query: 410 DD 411 ++ Sbjct: 580 EE 581 >UniRef50_C2KVL4 Transcription termination factor Rho n=1 Tax=Oribacterium sinus F0268 RepID=C2KVL4_9FIRM Length = 564 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 192/329 (58%), Positives = 244/329 (74%), Gaps = 20/329 (6%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFA 112 G+LE++ DG+GF+RS +++ G D+YV+ IRRF+L+TGD I G + ERY A Sbjct: 176 GILEVMADGYGFIRS--ENFMPGEQDVYVNSLMIRRFHLKTGDMIYGYAKSRNPQERYNA 233 Query: 113 LLKVNEVN-------FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLA 165 LL + VN F +P+ F+ LTP+ + R+ MER G + RVLDL Sbjct: 234 LLYIETVNDLPVSAIFRRPD-------FDKLTPIFPDERIHMER-EGKRVPTSLRVLDLL 285 Query: 166 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG 225 +PIG+GQRG+IV+PPKAGKT LL+ IAQSI N PD LM+LLIDERPEEVT+M V G Sbjct: 286 APIGKGQRGMIVSPPKAGKTTLLKQIAQSILKNQPDMTLMILLIDERPEEVTDMMEEVVG 345 Query: 226 ---EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282 +V+ STFDE H +VAEM IE+ KRLVE +DV ILLDSITRLARAYN +VP+SG Sbjct: 346 DKVQVIYSTFDELPEHHKRVAEMTIERGKRLVEQGQDVCILLDSITRLARAYNLIVPSSG 405 Query: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 KVL+GG+D+ ALH PKRFFGAARN+ EGGSLTI+ATAL+DTGS+MD+VIYEEFKGTGNME Sbjct: 406 KVLSGGMDSAALHMPKRFFGAARNIREGGSLTILATALVDTGSRMDDVIYEEFKGTGNME 465 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELL 371 L L+R++ E+R+FPAID +SGTR+++LL Sbjct: 466 LVLNRELQERRIFPAIDILKSGTRRDDLL 494 >UniRef50_B1ZZF9 Transcription termination factor Rho n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZZF9_OPITP Length = 448 Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust. Identities = 190/417 (45%), Positives = 273/417 (65%), Gaps = 2/417 (0%) Query: 3 LTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGF 62 L EL +++L + MG ++ ++ ++ A+ + G +++ G Sbjct: 34 LNELYALNLADLTSFARGMGASFEGAPNRKQLLTQVITAAAEQKRPMRDRGYIDVTDRGC 93 Query: 63 GFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFD 122 F+ +Y PDD Y+ S ++ + L+ G + ++ P+ GER ++++V+ V Sbjct: 94 -FIVHEHVNYRLYPDDAYLPESLMQLYGLKRGHRVEALVQAPQAGERCPSVVRVDSVMGM 152 Query: 123 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKA 182 P FE L P + R+ +E +D++ R +D+ +PIG GQR LIVAPP+ Sbjct: 153 PPSEISKVTPFEELIPYYPLQRILLELEE-PQKDVSMRAVDILTPIGFGQRALIVAPPRT 211 Query: 183 GKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQV 242 GKT+LLQNIA SI N P L++LLIDERPEEVT+ +R KGEVV+STFDE HV Sbjct: 212 GKTILLQNIANSITANSPQTKLILLLIDERPEEVTDFRRHTKGEVVSSTFDETPESHVHC 271 Query: 243 AEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFG 302 AEMVIE A+R VE + V+ILLDSITRLARAYN + GK ++GG+++NAL +PKRFFG Sbjct: 272 AEMVIENARRRVEQGEHVVILLDSITRLARAYNALAGNQGKTMSGGLESNALQKPKRFFG 331 Query: 303 AARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 362 +ARN+E GGSLTI+A+ALIDTGS+MDE+I+EEFKGTGN ELHL R + E+R+FPAI+ +R Sbjct: 332 SARNIEGGGSLTIVASALIDTGSRMDEIIFEEFKGTGNCELHLDRGLVERRIFPAINIDR 391 Query: 363 SGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419 SGTRKEEL+ EELQ+++ LR+ + +G I++ME LI +L TK+N +F + R+ Sbjct: 392 SGTRKEELIYHPEELQRIYGLRRAMQGLGPIESMEMLITRLKKTKSNAEFLLGLSRT 448 >UniRef50_B2UR37 Transcription termination factor Rho n=2 Tax=Verrucomicrobiaceae RepID=B2UR37_AKKM8 Length = 474 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 183/413 (44%), Positives = 273/413 (66%), Gaps = 3/413 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +++ EL+ P+++L + E + + N A + K ++F + KQ G ++ GV+E +D Sbjct: 60 IDINELRKRPLNDLQEMAEGLPIRNAASLTKSQLVFELGKQLLAKGHEVVVSGVMEQAKD 119 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 + LR S+ PDDIY+ + I+ +LR G I ++R + ++Y + V V Sbjct: 120 NYAMLRDPVKSFRTSPDDIYLGGNLIKPLHLRVGQQIKVRLRKLRPHDKYLSAASVISVE 179 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 E+ R + FE LTPL RL +E N RVLDL +P G+GQRGLIVAPP Sbjct: 180 DIPAEDYRARSDFERLTPLFPKERLLLE--NKGVNSAAMRVLDLMTPFGKGQRGLIVAPP 237 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+LL+ IA+SI N+P+ L+VLL+DERPEEVT+ + V V ASTFDEP+ RH Sbjct: 238 RGGKTVLLKTIARSIRANYPEVELIVLLLDERPEEVTDFEETVDAPVFASTFDEPSRRHA 297 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 QV+++VIE+AKRLVE +DV+ILLDS+TRLAR YN G++++GG+ +NAL +P++F Sbjct: 298 QVSDLVIERAKRLVEMGRDVVILLDSLTRLARGYNANQ-TGGRIMSGGLGSNALEKPRKF 356 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 F AARNVEEGGSLTIIAT L+DT S+MDEVI+EEFKGTGN+E+ L R+++E+R++PAI Sbjct: 357 FSAARNVEEGGSLTIIATCLVDTESRMDEVIFEEFKGTGNLEIRLDRELSERRIYPAISL 416 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFF 413 ++SGTR ++ L ++E K+ LR+ + + ++ L+ ++ T+ N + Sbjct: 417 SQSGTRNDDRLYNEQEFVKIMQLRRQLAMKPGWEGLQTLLQNISKTQNNAELL 469 >UniRef50_Q1D9H4 Transcription termination factor Rho n=5 Tax=Myxococcaceae RepID=Q1D9H4_MYXXD Length = 566 Score = 347 bits (891), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 187/366 (51%), Positives = 255/366 (69%), Gaps = 11/366 (3%) Query: 52 DGVLEILQDG-FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISG--KIRPPKEGE 108 +GVL+ G FLR + LA PDD + + +++ LR G I+ ++R K Sbjct: 207 EGVLDTEAKGPNAFLRQLKRNLLAAPDDPELPKNLVQKLRLRQGQYITAFAQMRGHKG-- 264 Query: 109 RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPI 168 + KV+ V+ E A F +LT + RL++E G+ +++ RVLDL SPI Sbjct: 265 ---VIQKVDTVDGRPLEGAPRLPHFADLTSVDPTERLKLENGH---KEMVTRVLDLISPI 318 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVV 228 G+GQR LIVAPPK GKT++LQ IAQ+I NHP+C +MV+LIDERPEEVT+M+R +K EV+ Sbjct: 319 GKGQRALIVAPPKTGKTIMLQRIAQAILSNHPECHVMVVLIDERPEEVTDMRRGIKAEVL 378 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGG 288 AS+ D P + H++VAE+ +E+A+RLVE KDV++LLDSITRLARA+N V SG+ +TGG Sbjct: 379 ASSSDRPTADHLKVAELALERARRLVESGKDVVVLLDSITRLARAFNKEVDNSGRTMTGG 438 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 VD+ AL RPKR FGAAR EE G+LTII TALIDTGS+MDEVI+EEFKGTGN E+ L R Sbjct: 439 VDSRALERPKRLFGAARATEEAGTLTIIGTALIDTGSRMDEVIFEEFKGTGNSEVTLDRL 498 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKT 408 +AEKRVFPA++ +SGTRKEE L T E +K+ LR+++ + ++AME L+ +L+ Sbjct: 499 LAEKRVFPAVNIAQSGTRKEEKLFTLREYEKVKKLRQMLFSVKPVEAMEALVKRLSRYTY 558 Query: 409 NDDFFE 414 ND+F + Sbjct: 559 NDEFLD 564 >UniRef50_A5TX87 Transcription termination factor Rho n=11 Tax=Bacteria RepID=A5TX87_FUSNP Length = 413 Score = 346 bits (887), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 176/369 (47%), Positives = 254/369 (68%), Gaps = 12/369 (3%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFA 112 G+L+ +GFGFL+ +IY+S SQI+RF LR GD + G++R P E+ FA Sbjct: 50 GILDTAPEGFGFLKETTLG-----KNIYMSASQIKRFKLRRGDQVLGEVRKPIGEEKNFA 104 Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED-LTARVLDLASPIGRG 171 + +V + N + ++I +E L P + + ++ G +D ++ R+LDL SPIG+G Sbjct: 105 IRRVLKANDNDLAALESRIPYEELIPTYPTEQFKL----GIEQDNISGRILDLISPIGKG 160 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVV-AS 230 QR LI+APPKAGKT + +IA ++ D + +LLIDERPEEVT+++ V+G V AS Sbjct: 161 QRALIIAPPKAGKTTFISSIANALIEGQKDSEVWILLIDERPEEVTDIKENVEGATVFAS 220 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVD 290 TFD+ H++V E +IEKAK VE ++V+ILLDS+TRLARAYN V+P+SGK+L+GG+D Sbjct: 221 TFDDDPKNHIKVTEEIIEKAKMKVEDGENVVILLDSLTRLARAYNIVMPSSGKLLSGGID 280 Query: 291 ANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA 350 AL+ PK FFGAARN++ GGSLTIIAT L+DTGSKMDEVIYEEFK TGN +++L R++A Sbjct: 281 PTALYHPKNFFGAARNIKNGGSLTIIATILVDTGSKMDEVIYEEFKSTGNCDIYLDRQLA 340 Query: 351 EKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM-GEIDAMEFLINKLAMTKTN 409 E R+FPAID +SGTRKEELL + ++ ++W LR++++ ++ A LI + T+ N Sbjct: 341 EFRIFPAIDITKSGTRKEELLLDKNQIDEIWNLRRLLNDYDNKVSATSALIKAIKTTRDN 400 Query: 410 DDFFEMMKR 418 D+ + + Sbjct: 401 DELLAQLPK 409 >UniRef50_Q9FC33 Putative transcription terminator factor n=2 Tax=Streptomyces RepID=Q9FC33_STRCO Length = 415 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 189/377 (50%), Positives = 249/377 (66%), Gaps = 15/377 (3%) Query: 41 QHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK 100 QHA++ DI GVL+I G G LR + P D +SP+ IRR LR GD + G Sbjct: 48 QHAQA--DI-ASGVLDIETGGKGRLRGRN--LQPEPADPALSPALIRRHGLRRGDLVEGV 102 Query: 101 IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR 160 G+R L V VN P+ R++ F +LTPLH + RLR+E L R Sbjct: 103 C-----GDRR-TLTDVVRVNGRTPDR-RSRPHFADLTPLHPHERLRLEH---PAAGLAGR 152 Query: 161 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ 220 V+DL +P+G+GQRGLIVAPPK GKT+LLQ A ++A NHP+ LMV+L+DERPEEVT+M+ Sbjct: 153 VVDLLAPVGKGQRGLIVAPPKTGKTVLLQQFAAAVAGNHPEARLMVVLLDERPEEVTDMR 212 Query: 221 RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA 280 R V+GEV +STFD A +H+ +AE+VIE+AKRLVE +DV+ILLDS+TRL RA+N + Sbjct: 213 RSVRGEVYSSTFDRSARQHIALAELVIERAKRLVEAGEDVVILLDSLTRLCRAHNNAASS 272 Query: 281 SGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGN 340 G+ L+GGVDA AL PKRFFGAAR EEGGSLTI+ATAL++TGS+ D+ +EE K TGN Sbjct: 273 GGRTLSGGVDAGALLGPKRFFGAARKAEEGGSLTILATALVETGSRADDFYFEELKSTGN 332 Query: 341 MELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLI 400 MEL LSR+ A +RVFPA++ SGTR+EELL + E + LR+ + +E L+ Sbjct: 333 MELRLSREPASRRVFPAVEPVGSGTRREELLLSGAETTALRGLRRALVARDGQSGLETLL 392 Query: 401 NKLAMTKTNDDFFEMMK 417 +L T N F ++ Sbjct: 393 ERLRRTPDNATFLRQVQ 409 >UniRef50_A6CBM4 Transcription termination factor Rho n=3 Tax=Planctomycetaceae RepID=A6CBM4_9PLAN Length = 543 Score = 334 bits (857), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 171/373 (45%), Positives = 253/373 (67%), Gaps = 6/373 (1%) Query: 47 EDIFG--DGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPP 104 E+I G +GVLE+ +GF+R S+Y A D +VS S I + NLR G I G++ P Sbjct: 172 ENISGTIEGVLELHPKAYGFIRDPKSNYKAQDSDAFVSSSLIEKHNLREGILIRGEVGPG 231 Query: 105 KEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDL 164 G+ L + ++ E F+ LTP++ ++++E G +T R++D+ Sbjct: 232 TRGQ-GPRLKSIETIDGRTVEEYMQIKSFDELTPINPFEQIKLETG---PMPITMRIMDM 287 Query: 165 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK 224 +PIG+GQR L+VAPP+ GKTMLLQ+IA++++ NHP+ LMVLLIDERPEEVTEMQR +K Sbjct: 288 LTPIGKGQRALVVAPPRTGKTMLLQDIAEAVSTNHPEIRLMVLLIDERPEEVTEMQRSIK 347 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 GEV++S+ D HV+ ++++ E+ KRL E +D ILLDSITR ARA+N V +G+ Sbjct: 348 GEVISSSMDRDVESHVRTSQLIFERGKRLAEAGEDAFILLDSITRTARAFNKWVGNTGRT 407 Query: 285 LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELH 344 ++GG+D A+ PK+ FG AR +EGGSLT++ TALIDTGS+MDEVI++EFKGTGNME+ Sbjct: 408 MSGGLDVKAMDIPKKMFGTARRFDEGGSLTVLGTALIDTGSRMDEVIFQEFKGTGNMEMV 467 Query: 345 LSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 LSR+++++R+FPAID SGTR+EE + E L+ + +LR+ + + ++AME L + L Sbjct: 468 LSRELSDRRIFPAIDITLSGTRREEKILAPEVLEGVTMLRRSLISLNPVEAMEQLSSTLK 527 Query: 405 MTKTNDDFFEMMK 417 +N +F E ++ Sbjct: 528 KFPSNKEFLEKIR 540 >UniRef50_C1A5H8 Transcription termination factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5H8_GEMAT Length = 737 Score = 333 bits (853), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 174/369 (47%), Positives = 250/369 (67%), Gaps = 8/369 (2%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFA 112 G + +DG GFLR ++SYL P D ++ P+ +R LR GD + ++ ++ + Sbjct: 372 GWFDPSRDG-GFLRRPENSYLPDPTDPFMPPALVRLHQLRRGDRL--EVTYGRDHRGRYL 428 Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGST--EDLTARVLDLASPIGR 170 +++V +N P + F L + + +L +E G + +LT R +DL +PIG Sbjct: 429 VIEVQTLNDGSPVVLEKRPDFNTLVASYPDRKLTLETGRPAKTGPELTRRAIDLIAPIGY 488 Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAS 230 GQR LIVAP +AGKT LLQ I + ++ NHP+ VL+VLL+DERPEEV+EM GEVVAS Sbjct: 489 GQRALIVAPARAGKTTLLQAIVEGVSINHPEAVLLVLLVDERPEEVSEMITWGYGEVVAS 548 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVD 290 +FD P RHV+VAEM +E+A+RLVE KDV+I+LDSITRLARA+NTV +G+ ++GG+D Sbjct: 549 SFDMPPKRHVEVAEMTLERARRLVEQGKDVVIVLDSITRLARAHNTVDRGTGRTMSGGLD 608 Query: 291 ANALHRPKRFFGAARNVEE---GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSR 347 A A+ +PK FFG+AR + GGSLTIIATAL++TGS+MD+VI+EEFKGTGN E+ L R Sbjct: 609 ATAMQKPKAFFGSARMIAPQHGGGSLTIIATALVETGSRMDDVIFEEFKGTGNCEIKLDR 668 Query: 348 KIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK 407 +A++R+FPA D SGTR+EE L ++L+K+ +LR+ +H + ME+LI ++A T Sbjct: 669 SLADRRIFPAFDIATSGTRREEKLYRPDQLEKVHLLRRGLHQLPPQAGMEWLIKRIAATT 728 Query: 408 TNDDFFEMM 416 ND + + Sbjct: 729 NNDSLLDGL 737 >UniRef50_D2QWP2 Transcription termination factor Rho n=3 Tax=Planctomycetaceae RepID=D2QWP2_9PLAN Length = 488 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 173/366 (47%), Positives = 252/366 (68%), Gaps = 4/366 (1%) Query: 51 GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERY 110 G G+LE+ +G+GFLRS D++Y D +V + I +++LR G I G+++P + G + Sbjct: 121 GYGLLEMHPNGYGFLRSPDNNYSRERSDPFVPGTMIEKYSLRQGVMIRGQVQPGR-GHQG 179 Query: 111 FALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGR 170 L +V +V P++ F+ LTP++ + R+E G + L+ RV+DL +P+GR Sbjct: 180 PRLREVTDVEGMPPDDYIKVKAFDQLTPINPDRWFRLETG---PQPLSTRVMDLLTPLGR 236 Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAS 230 GQR LIVAPP++GKT+L+Q I+ +A N+PD +LLIDERPEEVT+M+R VKGEV AS Sbjct: 237 GQRALIVAPPRSGKTILMQQISAGVAANYPDVKQFILLIDERPEEVTDMRRNVKGEVCAS 296 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVD 290 + D HV++++++IE+ KR+ E +DV +LLDSITRLARA+N V G ++GG++ Sbjct: 297 SLDNDIESHVRLSQLIIERCKRMAEMGQDVFLLLDSITRLARAFNKYVGDKGGTMSGGLN 356 Query: 291 ANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA 350 A+ PK+ F AR EEGGSLTI+ TALI+T S+MD+ I++EFKGTGNMEL L RK+A Sbjct: 357 IKAMDIPKKLFATARAFEEGGSLTIVGTALIETNSRMDDAIFQEFKGTGNMELVLDRKLA 416 Query: 351 EKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 E+RV+PAID +SGTR+EELL E L + +LR+ + M +DAME L +L KTN Sbjct: 417 ERRVWPAIDVTQSGTRREELLLEPEALHAVTMLRRTLSSMHPVDAMEQLTKQLGRFKTNA 476 Query: 411 DFFEMM 416 +F +++ Sbjct: 477 EFIKLI 482 >UniRef50_B2UQ10 Transcription termination factor Rho n=2 Tax=Bacteria RepID=B2UQ10_AKKM8 Length = 659 Score = 326 bits (835), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 177/356 (49%), Positives = 239/356 (67%), Gaps = 11/356 (3%) Query: 52 DGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYF 111 DG+LEI GFGFLR D+ + A + +YV IRRF LR + G+ +R Sbjct: 295 DGLLEITNKGFGFLRKPDNDFDAFAEAVYVPQDMIRRFGLRPAVWVHGQA---CRHDRGI 351 Query: 112 ALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG 171 L ++ VN PE AR FE L ++ N R+ E E T R LDL +PIGRG Sbjct: 352 LLTEIASVNGVAPERARKNPHFEELKAVNPNKRISFE---TRPERYTTRTLDLIAPIGRG 408 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLVKG-EVVA 229 QRGLIV+PP+AGKT LLQ++A++I N+ D + LMVLL+DERPEEVTE +R + G EV A Sbjct: 409 QRGLIVSPPRAGKTTLLQHMAEAILENYRDSIHLMVLLVDERPEEVTEFKRSLPGAEVYA 468 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGV 289 S+ D H ++AE+ IE+AKRLVE + V +L+DSITRLARAYN SG+ ++GG+ Sbjct: 469 SSNDGRVRDHCRMAELCIERAKRLVEAGQHVFLLMDSITRLARAYNNADKGSGRTMSGGI 528 Query: 290 DANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 349 DA AL P+R F AARN + GSLTIIATAL++T S+MD++I++EFKGTGNMEL L+R+I Sbjct: 529 DARALEMPRRLFAAARNTRQAGSLTIIATALVETNSRMDDLIFQEFKGTGNMELVLNRRI 588 Query: 350 AEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAME---FLINK 402 AE+ +FPA+D +SGTR+EEL+ + L KM ++R+ + ++AME F +NK Sbjct: 589 AEQYIFPAVDILKSGTRREELIMPEAWLYKMNLIRRALAGHKPVEAMERFLFFLNK 644 >UniRef50_B4CU50 Transcription termination factor Rho n=3 Tax=Verrucomicrobia RepID=B4CU50_9BACT Length = 592 Score = 322 bits (824), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 176/366 (48%), Positives = 244/366 (66%), Gaps = 9/366 (2%) Query: 47 EDIFGD--GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPP 104 ED G+ G++E+ GFGFLR + P D++V+P R +NLR G + G+ R Sbjct: 224 EDEIGEAEGIVEVSGKGFGFLRDPKRGFAQHPADVFVTPELCRAYNLRDGQWVKGQTR-- 281 Query: 105 KEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDL 164 +G R L K+ +N D + + + F+ LT + +R+E E T RV+DL Sbjct: 282 -KGNRGPQLFKIQTINGDDADKSAHLPSFDELTVISPEKFIRLE---TVPERFTTRVVDL 337 Query: 165 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-LV 223 PIGRGQRGLIVAPP+ GKT LLQ+IA+++ NHPD L++LL+DERPEEVTEM+R L Sbjct: 338 MCPIGRGQRGLIVAPPRTGKTTLLQHIAEAVVKNHPDIKLIILLVDERPEEVTEMKRTLP 397 Query: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283 EV+AS+ D H ++A++ IE+AKRLVE KDV ILLDSITR+ RA+N G+ Sbjct: 398 TAEVMASSNDSDVKSHTRIAQLAIERAKRLVESGKDVFILLDSITRVGRAFNNATGGGGR 457 Query: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 +GG+D AL P+R F AARN EE GSLTIIATALI+TGS MD+ I++EFKGTGNMEL Sbjct: 458 TGSGGLDNRALEIPRRIFAAARNTEEAGSLTIIATALIETGSLMDDRIFQEFKGTGNMEL 517 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKL 403 L RKI+++R++PA+D +SGTR+EELL ++ +L K+ ++R+ + I+A+E L+ + Sbjct: 518 VLDRKISDQRIYPAVDIFQSGTRREELLLSETDLHKIAVIRRGLAGHKPIEAIERLLFFV 577 Query: 404 AMTKTN 409 TN Sbjct: 578 KKFPTN 583 >UniRef50_C0ACT9 H+transporting two-sector ATPase alpha/beta subunit central region n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ACT9_9BACT Length = 416 Score = 314 bits (805), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 163/344 (47%), Positives = 236/344 (68%), Gaps = 6/344 (1%) Query: 76 PDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLK-VNEVNFDKPENARNKILFE 134 P D +V IRRF +R G ++G +PP EG +K + V+ E R KI F Sbjct: 78 PTDAFVPKELIRRFKIRQGSFVTGTAQPP-EGRFPNPKMKFIESVDGLTIEERRAKIEFT 136 Query: 135 NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 194 LT + + +L+ME +G LT R +DL P+G+G RGLIVAPP+ GKT LL+++A Sbjct: 137 QLTTISPDQQLKMETKDGR---LTTRAVDLFCPVGKGTRGLIVAPPRTGKTTLLRDMALG 193 Query: 195 IAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV 254 + NHP+C +M+LL+DERPEEVT+ +R V EV AS+ DE H+++A++ IE+A+RLV Sbjct: 194 VLENHPECHVMILLVDERPEEVTDFKRSVPAEVWASSNDENVESHIRIADLCIERARRLV 253 Query: 255 EHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLT 314 E KDV++ LDS+TRLARA+NT SG+ +GG+D AL +P++ F +ARN E+GGSLT Sbjct: 254 EAGKDVVLFLDSLTRLARAHNTQR-NSGRTGSGGLDVRALEKPRQLFASARNTEDGGSLT 312 Query: 315 IIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQ 374 I+A+ LI+TGS+MD+VI++EFKGTGNMEL L RK AE R++PA++ SGTRKEELL + Sbjct: 313 IVASILIETGSRMDDVIFQEFKGTGNMELVLDRKCAEMRLWPAMNVASSGTRKEELLISA 372 Query: 375 EELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 ++L + R+ + +A E +I +L+ TKTN++F +++ R Sbjct: 373 DKLDGIHFFRRALVSQRIEEATETMIARLSKTKTNEEFLKLIAR 416 >UniRef50_C0QKE9 Rho1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKE9_DESAH Length = 355 Score = 305 bits (782), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 158/353 (44%), Positives = 232/353 (65%), Gaps = 4/353 (1%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFA 112 G LEI+ GFGFLRS + +Y P+D YVS I RF+LR G I G+ + A Sbjct: 6 GYLEIMDRGFGFLRSIEKNYQPEPEDPYVSIPLINRFDLREGSFIVGEGESKGAKNKNLA 65 Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ 172 L++V+ VN + L + T ++ R + +G +D T + LDL PIG+GQ Sbjct: 66 LIRVHTVNGLSLDEYTKISLLQEQTSINPMERYTICQG---PDDTTGKALDLIVPIGKGQ 122 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-LVKGEVVAST 231 RGLI++PPK+GKT +L+++A SI NHP + VLL+DERPEEVT+ +R L + +V S+ Sbjct: 123 RGLIISPPKSGKTTILRHMANSIILNHPKSKVFVLLVDERPEEVTDFRRGLREAQVFYSS 182 Query: 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDA 291 D+ S H+++ + + A R E +D ++ +DS+TR+ RA+N + GK +TGG+ A Sbjct: 183 ADQQISHHMRMTRLAMHTAIRCAETGQDAVVFIDSLTRMTRAFNIETNSHGKTMTGGLGA 242 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 NA+ P++ FGAARN+E GGSLTI+AT L+DTGS+MD++I++EFKGTGNM+L LSR AE Sbjct: 243 NAMAFPRKIFGAARNLESGGSLTILATILVDTGSRMDDIIFQEFKGTGNMDLMLSRACAE 302 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 +RV+PAI+ N+SGTRKE+LL +E ++ LR+ + + E+ AM+ I L Sbjct: 303 QRVWPAININQSGTRKEDLLLDDQEYEETIRLRRELSGLDEVTAMQRFIEYLG 355 >UniRef50_B1ZX59 H+transporting two-sector ATPase alpha/beta subunit central region n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZX59_OPITP Length = 412 Score = 304 bits (778), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 171/374 (45%), Positives = 239/374 (63%), Gaps = 6/374 (1%) Query: 47 EDIFGDGVLEI-LQ-DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPP 104 E I +GVL+I LQ G G L P D +V IRRF L+ G I G PP Sbjct: 43 ETIQVEGVLDIDLQRGGNGQLIDISRGGKRRPTDPFVPKELIRRFKLKQGSMIGGTAFPP 102 Query: 105 KEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDL 164 + + V+ E R K F LT + N L+ME +G +T R +DL Sbjct: 103 DGRFPNPKMRFIETVDGIPLEERRGKFEFTTLTTISPNQHLKMEMKDGR---MTTRAVDL 159 Query: 165 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK 224 PIG+G RGLIVAPP+ GKT LL+++A + N+P+C +M+LL+DERPEEVT+ +R V Sbjct: 160 FCPIGKGTRGLIVAPPRTGKTTLLRDMALGVLENNPECFVMILLVDERPEEVTDFKRSVP 219 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 EV AS+ DE H+++A++ IE+AKRLVE +DV++ LDSITRLARA+NT SG+ Sbjct: 220 AEVWASSNDEQIENHLRIADLCIERAKRLVEVGRDVVLFLDSITRLARAHNTAR-NSGRT 278 Query: 285 LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELH 344 +GG+D AL +P++ F +AR EE GSLTIIA+ L++TGS+MD+VI++EFKGTGNMEL Sbjct: 279 GSGGLDVRALEKPRQLFASARKTEEAGSLTIIASVLVETGSRMDDVIFQEFKGTGNMELV 338 Query: 345 LSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 L RK AE R++PAI+ SGTRKEELL + L+ + R+ + ++ E +I +L+ Sbjct: 339 LDRKCAEMRLWPAINVAASGTRKEELLIDAKTLEGIHFFRRALVQQKIEESTETMIARLS 398 Query: 405 MTKTNDDFFEMMKR 418 TKTN +F ++++R Sbjct: 399 KTKTNAEFLKLIQR 412 >UniRef50_Q2S040 Transcription termination factor rho n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S040_SALRD Length = 373 Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 157/348 (45%), Positives = 228/348 (65%), Gaps = 5/348 (1%) Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 +GF+R DD ++ P I +FNLR G I G ++P ++G ++ V Sbjct: 21 YGFMRELRPDLPKDEDDPFMPPPLIGKFNLRDGVVIEGDLKPGRKGGMQVGW--IDSVMG 78 Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 PE F+ ++ + +L + G T+D + RVLDL +P+G+GQR LIV+PP+ Sbjct: 79 LPPEEWAQLKDFDQGASVYPDEKLDLITG---TDDESMRVLDLVAPLGKGQRALIVSPPR 135 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQ 241 AGKT+LL++IA + NHP+ L+ LL+DERPEEVT+ +R + +V AS+ D HV+ Sbjct: 136 AGKTVLLKDIAAGVTENHPEVELVSLLVDERPEEVTDFRRTTEAQVFASSNDRGEDNHVR 195 Query: 242 VAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFF 301 V+ + +E AKRLVE KDV++LLDS+TRL R +N V SG+ L+GG+DA AL P++ F Sbjct: 196 VSTLAMEHAKRLVETGKDVVVLLDSLTRLGRTFNLWVDGSGRTLSGGLDAEALKVPRQIF 255 Query: 302 GAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYN 361 G+ARN+E GGSLTIIATAL+DTGS+MDEVI+EEFKGTGN E+ L R++A+KR+FPA++ Sbjct: 256 GSARNIEGGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSEIVLDREMADKRIFPAVNLR 315 Query: 362 RSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 SGTR EE L + +K L + ++ I+AM+ L+ L + +N Sbjct: 316 ESGTRNEERLLGEVRRKKHNQLFRALNSRAPIEAMQALLRHLRNSPSN 363 >UniRef50_A6VWI3 H+transporting two-sector ATPase alpha/beta subunit central region n=4 Tax=Gammaproteobacteria RepID=A6VWI3_MARMS Length = 318 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 142/309 (45%), Positives = 203/309 (65%), Gaps = 4/309 (1%) Query: 106 EGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLA 165 +G+R V+EV D N K F N +H + + + G+ T R +DL Sbjct: 9 KGKRSSDATPVDEVVEDLYPNDPEK-RFLNGVAIHPSPCIHLASGSSQR---TVRAMDLI 64 Query: 166 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG 225 +PIG GQRGLIVAPP +GKT +L++I Q++A +P+ L LLIDERPEEVT+ +R V Sbjct: 65 TPIGMGQRGLIVAPPGSGKTTMLKHICQAVAEAYPEIKLYALLIDERPEEVTDFKRSVSA 124 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 EV AS+ DE ++HV+VA+ ++ A++ +DV+I++DS+TRLAR +N SG+ + Sbjct: 125 EVHASSSDESYTQHVRVADALLATARKQAGEGQDVMIVIDSLTRLARVHNAEQRGSGRTM 184 Query: 286 TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 +GG+D AL P++ FGAAR +E GGSLTI+AT L+DTGSKMD+VI+EEFKGTGNME+ L Sbjct: 185 SGGLDTRALEIPRKLFGAARKIENGGSLTILATILVDTGSKMDQVIFEEFKGTGNMEIVL 244 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 SR+ A RVFPAID +S TR+EELL ++L+K+ LR+ + + +D L+ L Sbjct: 245 SREAASHRVFPAIDIAKSSTRREELLIDGKDLEKVRALRRSLTNLKPVDGAHKLVELLEE 304 Query: 406 TKTNDDFFE 414 TN + + Sbjct: 305 FPTNAELLK 313 >UniRef50_UPI00018529F8 transcription termination factor Rho n=2 Tax=Helicobacter pylori RepID=UPI00018529F8 Length = 245 Score = 227 bits (578), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 105/225 (46%), Positives = 156/225 (69%), Gaps = 3/225 (1%) Query: 2 NLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61 ++ +L+ P +L+ + + +EN ++QD++F ILK G I G+LEI+ DG Sbjct: 24 HIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDG 83 Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 +GFLR D S+ G +D YVSPSQIRRF LR GD ++G++R PK+ E+Y+ALLK+ +N+ Sbjct: 84 YGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINY 143 Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 + +N+ LF+NLTPL + ++++E +T R+LDL SP+G+GQR LIVAPP+ Sbjct: 144 LPSDEIKNRPLFDNLTPLFPDEQIKLEY---EPTKVTGRMLDLFSPVGKGQRALIVAPPR 200 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE 226 GKT L++ +AQ I NHP+ L++LL+DERPEEVT+MQR VKG+ Sbjct: 201 TGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQ 245 >UniRef50_Q83MV6 Transcription termination factor Rho n=2 Tax=Tropheryma whipplei RepID=Q83MV6_TROWT Length = 454 Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 194/336 (57%), Gaps = 10/336 (2%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKE----GE 108 GVL++L D F+R+ + Y G DIYVS SQ+++++LR GD ++G++ K + Sbjct: 119 GVLDVL-DSCAFIRT--TGYSPGDSDIYVSLSQVKKYSLRKGDAVAGEVARVKSIDSYKQ 175 Query: 109 RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPI 168 R+F L+ VN VN + + + FE+ + RLR+ T + R++DL SP+ Sbjct: 176 RHFPLVSVNTVNGLEFQQVTTRPAFESGMCVPPTRRLRI---TPKTAPVEKRIVDLVSPV 232 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVV 228 +G RGL+ P K+G+T +L IA + + + L+ LL+ RPEE T M R ++GEVV Sbjct: 233 AKGTRGLVRGPSKSGRTTVLHEIAAGLCEQNKELHLITLLVGIRPEEATHMSRTLRGEVV 292 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGG 288 S+ + V VAE+V+E++KRLVE +DV++++DS+T L RAY V +++ Sbjct: 293 VSSMECSPEEQVGVAELVLERSKRLVEQGRDVLLIVDSMTHLGRAYALVGAPPSRLIGSA 352 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 + +AL FF +AR +E GS+T++AT L ++ S D ++ + M+L L + Sbjct: 353 AELSALRPITSFFLSARCIENSGSITMLATVLSESESAFDRLVEYDLVAVSGMQLVLDKL 412 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILR 384 +E+R FPAI+ RS +R E L + E ++ LR Sbjct: 413 ASERRDFPAINPIRSSSRDEFTLLSASEQSEVKRLR 448 >UniRef50_B9TD12 Transcription termination factor rho, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9TD12_RICCO Length = 435 Score = 183 bits (464), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 91/188 (48%), Positives = 133/188 (70%), Gaps = 9/188 (4%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER--- 109 G+L++L D + F+R+ S YLAG DD+Y+S S +R++ LR GD ++G++R P+EGER Sbjct: 121 GILDVL-DNYAFVRT--SGYLAGVDDVYLSLSLVRKYGLRRGDAVAGQVRQPREGERREK 177 Query: 110 YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIG 169 + +++++ VN PE A+N+ F P H RLRME + ++LT R+LDLA+PIG Sbjct: 178 FNPMVRIDAVNGADPELAKNRPDFATFVPTHPTDRLRMET---TPDNLTGRILDLAAPIG 234 Query: 170 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVA 229 +GQRGL+ P K+G+T LL++I S+ N+P+ LMV+L+DERPEEVT+ QR +KGEVVA Sbjct: 235 KGQRGLVTGPTKSGRTTLLRSIGASLTANNPEAHLMVVLLDERPEEVTDFQRAIKGEVVA 294 Query: 230 STFDEPAS 237 ST P S Sbjct: 295 STSTGPPS 302 >UniRef50_A9U7E2 Predicted protein (Fragment) n=3 Tax=cellular organisms RepID=A9U7E2_PHYPA Length = 438 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 86/134 (64%), Positives = 112/134 (83%), Gaps = 2/134 (1%) Query: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 L+GG+D A HRPKRFFG+ARN+EEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNMEL Sbjct: 1 TLSGGIDPAAFHRPKRFFGSARNIEEGGSLTILATALVETGSRMDDVIYEEFKGTGNMEL 60 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKL 403 HL RK+AE+R+FPAID RSGTR+EELL ++EEL K+W++RK ++ E ++ I KL Sbjct: 61 HLDRKLAERRIFPAIDIRRSGTRREELLLSKEELDKLWMIRKNMNETNEF--VDSFIKKL 118 Query: 404 AMTKTNDDFFEMMK 417 A TKTND+F + ++ Sbjct: 119 ADTKTNDEFLQTLE 132 >UniRef50_UPI0001B43522 transcription termination factor Rho n=1 Tax=Listeria monocytogenes FSL J2-071 RepID=UPI0001B43522 Length = 170 Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 71/172 (41%), Positives = 112/172 (65%), Gaps = 6/172 (3%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEIL-Q 59 +++ L++ + ++ +L + + +++ K+++IFA+LK +A+ F +GVLEI+ Sbjct: 4 LSIAYLESLTIKDIYSLAKEHKIAYYSKLTKRELIFALLKSNAEKEGFFFMEGVLEIIPN 63 Query: 60 DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEV 119 +GFGFLR + Y + +DIY+S SQIRRF LRTGD +SGK+RPPKE ERYF LL V V Sbjct: 64 EGFGFLRPIN--YSSSSEDIYISASQIRRFELRTGDRVSGKVRPPKENERYFGLLHVEAV 121 Query: 120 NFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG 171 N + PE A+ ++ F LTPL+ + ++ +E ++ R +DL SPIG G Sbjct: 122 NGENPEVAKERVHFPGLTPLYPDRQIHLET---EKYPISTRTIDLISPIGFG 170 >UniRef50_B0FLD3 Transcription termination factor Rho (Fragment) n=1 Tax=Flammeovirga yaeyamensis RepID=B0FLD3_9SPHI Length = 159 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 61/95 (64%), Positives = 74/95 (77%) Query: 49 IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGE 108 I +GVLEI+ DGFGFLRS+D +YLAGPDDIYVSPSQI+ F L+TGDT+ G IRPPK+GE Sbjct: 65 IDSEGVLEIMSDGFGFLRSSDYNYLAGPDDIYVSPSQIKLFGLKTGDTVKGSIRPPKDGE 124 Query: 109 RYFALLKVNEVNFDKPENARNKILFENLTPLHANS 143 +YFALLKV+ VN E +++I FE LTPL Sbjct: 125 KYFALLKVDTVNGKTTEEIKDRIPFEYLTPLFPQD 159 >UniRef50_UPI0001C31DE0 transcription termination factor Rho n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31DE0 Length = 449 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 99/322 (30%), Positives = 152/322 (47%), Gaps = 45/322 (13%) Query: 52 DGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYF 111 +GV+E+L +G GF+R A A D+YVS +Q+RR L GD +SG +R P+ ERY Sbjct: 154 EGVVELLGNGSGFVRLAPGGEAA-DGDVYVSAAQVRRCELVAGDKVSGPVRAPRRSERYP 212 Query: 112 ALLKVNEVNFDKPENARNK-ILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGR 170 +L++V+ +N + A ++ F+ L A R ++ ED+T + ++ +PIGR Sbjct: 213 SLVRVDTINGKSADEAGSEGTKFDELPAAFATERFALD-----AEDVTVKAIEWLTPIGR 267 Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAS 230 G R IV +AGKT L+ +A + V+L+ RPEE+TE + Sbjct: 268 GSRVSIVGTARAGKTEALRRLADHL-VKLDGVETSVVLVGARPEEITEWTGGPVEVAASL 326 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVD 290 +F A Q E I+ KR+ + ++L+D++ D Sbjct: 327 SFAASADAQSQAVERAIDNGKRVAARGGNAVVLIDTL----------------------D 364 Query: 291 ANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYE-EFKGTGNMELHLSRKI 349 ++ AARN+ +GGSLT+IATA G + V + E GTG Sbjct: 365 GVHSAAARKALAAARNIADGGSLTVIATASEPLGGETTVVALDAELAGTGR--------- 415 Query: 350 AEKRVFPAIDYNRSGTRKEELL 371 FPA+D SGT + ELL Sbjct: 416 -----FPALDLLASGTLRPELL 432 >UniRef50_UPI00017437AB transcription termination factor Rho n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00017437AB Length = 123 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 50/110 (45%), Positives = 77/110 (70%), Gaps = 5/110 (4%) Query: 111 FALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGR 170 + +LKV VN D PE + + F++L P + + +L + G ++++R++DL SPIG+ Sbjct: 18 YGILKVLLVNGDLPEKSLERPYFDDLVPSYPDEKLNLGGG-----EISSRIIDLVSPIGK 72 Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ 220 GQRGLIVAPPKAGKT+LL +A + +P+ + +LLIDERPEEVT+++ Sbjct: 73 GQRGLIVAPPKAGKTVLLSTLANDVIKYNPEIDVWILLIDERPEEVTDIK 122 >UniRef50_Q93EE2 Probable transcription termination factor (Fragment) n=1 Tax=Helicobacter hepaticus RepID=Q93EE2_HELHP Length = 95 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 42/93 (45%), Positives = 59/93 (63%) Query: 38 ILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTI 97 ILK G I G+L+I +G+GFLR+ S +D YVS SQIRRF LR GD + Sbjct: 2 ILKTQVNQGGYILFSGILDITNEGYGFLRALTESLADSQNDTYVSQSQIRRFALRNGDIV 61 Query: 98 SGKIRPPKEGERYFALLKVNEVNFDKPENARNK 130 +G++R PK+ ERY+ALLK+ +N+ E +N+ Sbjct: 62 TGQVRAPKDQERYYALLKIEAINYMSLEENKNR 94 >UniRef50_B0SE01 Endoflagellar biosynthesis/type III secretory pathway ATPase n=6 Tax=Leptospira RepID=B0SE01_LEPBA Length = 454 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 12/235 (5%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R +D +GRGQR I + GK+ LL IA+ Y + D V +V LI ER EV E Sbjct: 157 RAIDGMLTVGRGQRIGIFSGSGVGKSSLLGMIAR---YTNAD-VNVVALIGERGREVNEF 212 Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 + L + V +T D V A + A+ E V + +DS+TR A Sbjct: 213 LHVELGKEALARSVVFVATSDSSKMEQVSCANLACSAAEYFREKGMSVNLYMDSLTRYAE 272 Query: 273 AYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIY 332 A + V+T G ++ + + A GGS+T T L D MD+++ Sbjct: 273 ALRELSIGE-PVVTKGYASSVFSKMAKLVERAGTSHNGGSITGFYTVLTDAEDDMDDIVA 331 Query: 333 EEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKII 387 ++ +G + + L+RK+AE+ +PAID S +R + + ++ + I+R++I Sbjct: 332 DKVRGFIDGHIVLTRKLAEQSHYPAIDVPASLSRLMQKIVNEDHYMRASIVRELI 386 >UniRef50_P74857 Probable secretion system apparatus ATP synthase ssaN n=63 Tax=Gammaproteobacteria RepID=SSAN_SALTY Length = 433 Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 119/250 (47%), Gaps = 24/250 (9%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL-LIDERPEEVTE 218 R +D + G GQR I + P GK+ LL + N PD VL LI ER EV E Sbjct: 144 RAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLC-----NAPDADSNVLVLIGERGREVRE 198 Query: 219 MQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLA 271 E +V +T D PA V+ + A+ ++ K V++L DS+TR A Sbjct: 199 FIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYA 258 Query: 272 RAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVE-----EGGSLTIIATALIDTGSK 326 RA + A+G+ G + P F R +E E GS+T T L++ G Sbjct: 259 RAAREIALAAGETAVSGE-----YPPGVFSALPRLLERTGMGEKGSITAFYTVLVE-GDD 312 Query: 327 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKI 386 M+E + +E + + + LSR++AE+ +PAID + +R ++T+ E Q ILR+ Sbjct: 313 MNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRC 372 Query: 387 IHPMGEIDAM 396 + E++ + Sbjct: 373 LALYQEVELL 382 >UniRef50_P55717 Probable ATP synthase y4yI n=30 Tax=Bacteria RepID=Y4YI_RHISN Length = 451 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 87/297 (29%), Positives = 127/297 (42%), Gaps = 36/297 (12%) Query: 123 KPENARNKILFENLTPLHAN-----SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIV 177 +P + + ++ + PLH +R +ER L R LD G GQR I Sbjct: 125 RPLDGKGEVKTTEVRPLHGRAPNPMTRRMVER----PFPLGVRALDGLLTCGEGQRIGIY 180 Query: 178 APPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE-------VVAS 230 P GK+ L+ I + A + V++V LI ER EV E GE VV Sbjct: 181 GEPGGGKSTLISQIVKGAAAD----VVIVALIGERGREVREFVERHLGEEGLRRAIVVVE 236 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVD 290 T D A+ Q A M A+ E V +LLDS+TR RA + A+G+ T Sbjct: 237 TSDRSATERAQCAPMATALAEYFREQGLRVALLLDSLTRFCRAMREIGLAAGEPPT---- 292 Query: 291 ANALHRPKRFFGAA------RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELH 344 P F A + E GS+T T L++ G + I EE +G + + Sbjct: 293 --RRGFPPSVFAALPGLLERAGLGERGSITAFYTVLVE-GDGTGDPIAEESRGILDGHIV 349 Query: 345 LSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLIN 401 LSR +A + FPAID +S +R + + ++ + R ++ E EFLIN Sbjct: 350 LSRALAARSHFPAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARYAEC---EFLIN 403 >UniRef50_Q141X8 ATPase FliI/YscN n=11 Tax=Proteobacteria RepID=Q141X8_BURXL Length = 444 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/214 (31%), Positives = 104/214 (48%), Gaps = 13/214 (6%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R +D G GQR I AP GK+ ++ IA + + ++V LI ER EV E Sbjct: 152 RAIDGLLTCGVGQRTGIFAPAGGGKSTIMGMIANGASTD----AIVVALIGERGREVAEF 207 Query: 220 ------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARA 273 +R V+A+T D PA+ ++ AE+ + A L ++V++L DS+TR ARA Sbjct: 208 IHDHLERRRASTIVIAATSDRPAAERIKAAELASQVAVGLRASGRNVLLLFDSLTRYARA 267 Query: 274 YNTVVPASGK-VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIY 332 + A G+ L GG + + R AA V GS+T T L D + + + + Sbjct: 268 LRELGLAVGEPPLRGGFPPSVFAQLPRLIEAA-GVTAQGSITAFYTVLADE-ADLSDPVA 325 Query: 333 EEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 EE + + + LS K+ +PAID RS +R Sbjct: 326 EEARSLLDGHIQLSSKLGAAGHYPAIDILRSRSR 359 >UniRef50_C0QAK1 FliI n=9 Tax=root RepID=C0QAK1_DESAH Length = 451 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 130/267 (48%), Gaps = 20/267 (7%) Query: 124 PENARNKILFENLTPLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKA 182 P + + KI F + PL+ N MER D+ ++ P+GRGQR I+A Sbjct: 116 PLDGKGKIPFTHKYPLYGNPINPMERKTIKEPLDVGICAINTMIPLGRGQRVAIMAGSGV 175 Query: 183 GKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE----------MQRLVKGEVVASTF 232 GK++L+ + + + V+++ LI ER EV + M+R V VVA+T Sbjct: 176 GKSVLMGMMTKHTTAD----VIILGLIGERGREVKDFVSDTLGKEGMERSV---VVAATS 228 Query: 233 DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDA 291 D P ++ A + A+ + K+V++++DSITR A + V A+G+ T G Sbjct: 229 DSPPLVRMRGAYLATTLAEYFRDQGKNVLLIMDSITRYAMSSRDVGLAAGEPPTSRGYTP 288 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 + + A +E GGS+T I T L++ G M++ + + + + + LSR +A Sbjct: 289 SFFVQIPVLLERAGYIEGGGSITGIYTVLVE-GDDMNDPVGDTVRSIVDGHIVLSRDLAN 347 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQ 378 K +PAID S +R ++ E ++ Sbjct: 348 KGHYPAIDVLASVSRVMRDVSQPEHME 374 >UniRef50_A3SFS3 Flagellum-specific ATP synthase n=3 Tax=Rhodobacteraceae RepID=A3SFS3_9RHOB Length = 463 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 78/261 (29%), Positives = 121/261 (46%), Gaps = 18/261 (6%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 + +D+ +PI RGQR + A GK+ ++ +A++ + V+++ LI ER EV + Sbjct: 149 KCIDIFTPICRGQRMGVFAGSGVGKSTMMAMLARNTDAD----VIVIGLIGERGREVQQF 204 Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 + + + VV ST DE Q A A+ K V++LLDS+TR A Sbjct: 205 IQEDLGEEGMARAVVVVSTGDEAPLLRKQAALTTTAIAEYFKSTGKQVLLLLDSVTRFAM 264 Query: 273 AYNTVVPASGK--VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEV 330 A + A G+ L G + P A + G +T + T L+D G M+E Sbjct: 265 AQREIGLARGEPPTLRGYPPSVFSELPHLLERAGPGMAAEGDITGLYTVLVD-GDDMNEP 323 Query: 331 IYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390 I + +G + L L R+IAE+ FPAID +S +R + EE + + RK + Sbjct: 324 IADAVRGIVDGHLVLDRRIAEQGRFPAIDLQKSLSRMLPGCHSPEEYEITKVARKA---L 380 Query: 391 GEIDAMEFLINKLAMTKTNDD 411 G ME LI +L K D Sbjct: 381 GRYADMEDLI-RLGAYKAGSD 400 >UniRef50_C3KNB0 Type III secretion component, RhcN, ATP synthase n=3 Tax=Bacteria RepID=C3KNB0_RHISN Length = 448 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 117/252 (46%), Gaps = 22/252 (8%) Query: 157 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV 216 L R +D + RGQR I P GK+ LL I + + V+++ LI ER EV Sbjct: 157 LGIRAIDGLLTVARGQRVGIFGEPGVGKSSLLSAIVRGTKAD----VIVIGLIGERGREV 212 Query: 217 TEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 269 E GE VV +T D PA V+ A A+ + ++DV++L+DS+TR Sbjct: 213 REFIEGQLGEEGRRRSVVVVATSDRPAIERVKAAYAATAIAEYFRDQRRDVLLLMDSVTR 272 Query: 270 LARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVE-----EGGSLTIIATALIDTG 324 ARA + A+G+ T + P F R +E +GGS+T + T L + Sbjct: 273 FARAQREIGLAAGEPPT-----RRGYPPSLFAALPRLLERAGPGQGGSITALYTVLTEGD 327 Query: 325 SKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILR 384 +D V EE K + + LS +AE+ FPAID +S +R E + + +R Sbjct: 328 GTLDPV-AEETKAILDGHIMLSSALAERNFFPAIDILKSRSRLMETVAGRTHRDHAARIR 386 Query: 385 KIIHPMGEIDAM 396 ++ EI+ + Sbjct: 387 TLLARYEEIELL 398 >UniRef50_UPI00016C3500 Flagellar biosynthesis/type III secretory pathway ATPase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3500 Length = 430 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 83/313 (26%), Positives = 137/313 (43%), Gaps = 24/313 (7%) Query: 120 NFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA-RVLDLASPIGRGQRGLIVA 178 +P + + + L P++ + MER +T R +D G GQR I A Sbjct: 97 GLGRPLDGKGPLADCPLKPVNRPAPPAMERQRIREPFVTGIRAIDSVLTCGGGQRVGIFA 156 Query: 179 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVAST 231 GK+ LL +A+ + V ++ LI ER EV + + + V+ +T Sbjct: 157 GSGVGKSTLLGEVAKGSQAD----VNVIALIGERGREVAPFLEDVLGPEGMARSVVIVAT 212 Query: 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDA 291 ++ A V+ A+ I A ++V+ ++DS+TRLA A + +L G + Sbjct: 213 CEQTALMRVRAAQSAIAIADYFRSESQNVLFVIDSLTRLAMAQREL-----GLLLGEPPS 267 Query: 292 NALHRPKRFFGAARNVEE-----GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 + + P F A VE G +T + T L+D G MDE I + +G + + L Sbjct: 268 SRGYTPSVFQTLANTVERLGNAAVGGITALLTVLVD-GGDMDEPIADYVRGLVDGHIVLD 326 Query: 347 RKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEI-DAMEFLINKLAM 405 RKIAE+ +PAID +RS +R + +E + LR I+ +I D + M Sbjct: 327 RKIAERGFYPAIDVSRSISRVATDVVDRESAKAARKLRAIMATHADIQDMLRIGAYTRGM 386 Query: 406 TKTNDDFFEMMKR 418 D E+M + Sbjct: 387 DPQVDKALELMPK 399 >UniRef50_UPI0001C31239 flagellar protein export ATPase FliI n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31239 Length = 489 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 19/221 (8%) Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 DL R LD P GRGQR I A GK+ LL IA+S + V ++ L+ ER E Sbjct: 159 DLGVRALDALVPCGRGQRLGIFAGSGVGKSSLLGMIARSTTAD----VNVIALVGERGRE 214 Query: 216 VTEM------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 269 V E L + VV +T D+PA ++ A A+ + DV++++DS+TR Sbjct: 215 VKEFVERDLGDALSRSVVVVATSDQPALVRIKAAFTATAIAEHFRDQGNDVMLMMDSVTR 274 Query: 270 LARAYNTVVPASGK-VLTGGVDANALHRPKRFF---GAARNVEEGGSLTIIATALIDTGS 325 A A V A G+ T G + + R G AR GS+T + T L+D G Sbjct: 275 FAMAQREVGLAIGEPPATRGYTPSVFAQLPRLLERSGTART----GSITGLYTVLVD-GD 329 Query: 326 KMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 M+E I + + + + L+R++A +PAID +S +R Sbjct: 330 DMNEPIADAVRSILDGHVVLTRELAHASHYPAIDVLQSVSR 370 >UniRef50_C0QPA7 Flagellar protein export ATPase FliI n=1 Tax=Persephonella marina EX-H1 RepID=C0QPA7_PERMH Length = 443 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 73/239 (30%), Positives = 114/239 (47%), Gaps = 12/239 (5%) Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 D+ R ++ IG+GQR I + GK+ LL I++ + D V ++ LI ER E Sbjct: 133 DVGVRSINALLTIGKGQRIGIFSGAGVGKSTLLGMISR---FTEAD-VNVIALIGERGRE 188 Query: 216 VTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 268 V E + L K V+ +T D+ ++ A I AK K+V+ LLDS+T Sbjct: 189 VREFIEDNLGEEGLKKSVVIVATSDQTPLAKIRAAYSAIAVAKFFSNSGKNVLFLLDSLT 248 Query: 269 RLARAYNTVVPASGKV-LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKM 327 RLA A + A G+ T G + +F A N GS+T I T L++ Sbjct: 249 RLAMAQREIGLAVGEPPTTKGYTPSVFALLPKFIEQAGNFYNRGSITGIYTVLVEGDDIT 308 Query: 328 DEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKI 386 + + + G + + LSR++A KRVFPAID +S +R + + + L+ I +I Sbjct: 309 MDPVADAAMGFLDGHIVLSRELANKRVFPAIDVLKSVSRLMPQIVSDDILKYQGIFTEI 367 >UniRef50_Q0EZL2 Flagellum-specific ATP synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZL2_9PROT Length = 471 Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 113/243 (46%), Gaps = 23/243 (9%) Query: 157 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV 216 L R +D P+G GQR + A GK+ LL +A+ N V ++ L+ ER EV Sbjct: 151 LGVRAIDACMPMGWGQRMGLFAGAGVGKSTLLGMLAR----NSDAEVNVIALVGERSREV 206 Query: 217 TEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 269 E + L V+ +T D P V+ A M A+ E K V++L+DS+TR Sbjct: 207 REFLDQALGSEALQHSVVIVATSDMPPVLRVRAAHMATTIAEAFREQGKRVLLLMDSLTR 266 Query: 270 LARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVE-------EGGSLTIIATALID 322 +A+A + ++ G A+ + P F A +E +GG ++ T L++ Sbjct: 267 VAQAQREI-----GLMLGEPPASKGYTPSCFSILAELLERSGPGTAQGGDISAFYTVLVE 321 Query: 323 TGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWI 382 + I + + + L RK+AE+ FPAI+ RS +R + L E++Q + Sbjct: 322 GDDMRADPIADSAMSVLDGHILLDRKLAEQGHFPAINVLRSISRLDTQLMNNEQMQAARM 381 Query: 383 LRK 385 LR+ Sbjct: 382 LRR 384 >UniRef50_O85632 EscN n=34 Tax=Enterobacteriaceae RepID=O85632_ECOLX Length = 446 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 13/238 (5%) Query: 157 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV 216 L R +D G GQR I A GK+ LL I + + ++++ LI ER EV Sbjct: 156 LGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD----IIVLALIGERGREV 211 Query: 217 TEMQRLV------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 270 E L+ K +V +T D PA ++ A A+ + K+V++++DS+TR Sbjct: 212 NEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRY 271 Query: 271 ARAYNTVVPASGKV-LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDE 329 ARA V ASG+ + GG + + A + GS+T I T L+++ +++ Sbjct: 272 ARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAGPAPK-GSITAIYTVLLES-DNVND 329 Query: 330 VIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKII 387 I +E + + + L+R++AE+ FPAID S +R + T E L+ +K+I Sbjct: 330 PIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKKLI 387 >UniRef50_D2R528 ATPase, FliI/YscN family n=4 Tax=Planctomycetaceae RepID=D2R528_9PLAN Length = 455 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 77/263 (29%), Positives = 129/263 (49%), Gaps = 26/263 (9%) Query: 138 PLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 197 P A SR R++ +T R +D G GQR + A GK++ L +A+ Y Sbjct: 126 PPAATSRPRID----TTFSTGVRAIDGLLTCGVGQRIGVFAGSGVGKSVTLGMMAK---Y 178 Query: 198 NHPDCVLMVLLIDERPEEVTE-MQR------LVKGEVVASTFDEPASRHVQVAEMVIEKA 250 + D V+++ LI ER EV E ++R L + V +T DEPA VQ A A Sbjct: 179 SSAD-VIVIGLIGERGREVNEFLERDLGPTGLARSVCVVATSDEPAIMRVQAASTATAVA 237 Query: 251 KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEG 310 + + K+V++++DS+TR A A + A+G+ T + P F R VE Sbjct: 238 EYFRDQGKNVLLMMDSLTRFALAQREIGLAAGEPPT-----TRGYPPSVFALLPRLVERA 292 Query: 311 -----GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT 365 GS+T I + L++ G ++E + + +G + + LSRK+A + +PAI+ S + Sbjct: 293 GRTPQGSITAIYSVLVE-GDDVNEPVSDTVRGLLDGHVILSRKLAAQSHYPAIEVLGSIS 351 Query: 366 RKEELLTTQEELQKMWILRKIIH 388 R +TT ++ I+R+++ Sbjct: 352 RLFTEITTPQQRSAAAIVRELLS 374 >UniRef50_P0A1C0 Probable ATP synthase spaL n=121 Tax=Proteobacteria RepID=SPAL_SALTI Length = 431 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 14/242 (5%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R +D G GQR I A GKTML+ + + + V ++ LI ER EVTE Sbjct: 141 RAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEAD----VFVIGLIGERGREVTEF 196 Query: 220 QRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 +++ +V +T D P+ A++ A+ + K V++ +DS+TR AR Sbjct: 197 VDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYAR 256 Query: 273 AYNTVVPASG-KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVI 331 A V ASG + G A+ R E GS+T T L+++ + D + Sbjct: 257 ALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE-GSITAFYTVLLESEEEADP-M 314 Query: 332 YEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMG 391 +E + + L+LSRK+A + +PAID +S +R +TT ++ +RK++ + Sbjct: 315 ADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLE 374 Query: 392 EI 393 E+ Sbjct: 375 EL 376 >UniRef50_B2V6Q6 Flagellar protein export ATPase FliI n=4 Tax=Bacteria RepID=B2V6Q6_SULSY Length = 437 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 86/290 (29%), Positives = 134/290 (46%), Gaps = 17/290 (5%) Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAP 179 F +P N + KI + N L + +ER + DL R ++ IG+GQR I++ Sbjct: 98 FGRPLN-KEKINYSNSYYLKLETINPLERERVTEVLDLGVRAVNALFTIGKGQRMGILSG 156 Query: 180 PKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTF 232 GK+ LL I++ + D V ++ LI ER EV E + L K VV +T Sbjct: 157 AGVGKSTLLGMISR---FTESD-VNVIALIGERGREVREFIEDSLKEEGLKKSVVVVATS 212 Query: 233 DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGVDA 291 D P ++ + A+ K+V+ LLDS+TR+A A + ++G+ T G Sbjct: 213 DMPPLAKIRAVMTSLAIARYFSNIGKNVLYLLDSLTRVAMAQREIGLSAGEPPTTKGYTP 272 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 + R A N + GS+T I T L++ ++ I + + + LSR+IA Sbjct: 273 SVFTLLPRIIEQAGNFKNKGSITGIYTVLVEGDEIQNDPIADAAISFLDGHIVLSRQIAN 332 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLIN 401 KR++PAID +S +R L E M KII + ME +IN Sbjct: 333 KRIYPAIDILKSISRLMPQLVNDE---IMLYQSKIISLEAKYREMEDMIN 379 >UniRef50_A7HV56 Flagellar protein export ATPase FliI n=8 Tax=Rhizobiales RepID=A7HV56_PARL1 Length = 445 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 133/294 (45%), Gaps = 22/294 (7%) Query: 125 ENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGK 184 + A+ +L P H R+R DL R L+ + RGQR I A GK Sbjct: 117 QGAQPYLLRNMPPPAHTRQRVR------GKIDLGVRALNTFTTCCRGQRMGIFAGSGVGK 170 Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPAS 237 ++LL +A++ A + V ++ LI ER EV E + L + VV +T DEPA Sbjct: 171 SVLLSMLARNTACD----VSVIGLIGERGREVQEFIEDDLGPEGLARSVVVVATSDEPAL 226 Query: 238 RHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHR 296 Q A + + A+ + ++V+ ++DS+TR A A + ++G+ T G Sbjct: 227 MRRQAAYLTLSLAEYFRDRDQNVLCMMDSVTRFAVAQREIGLSTGEPPTSKGYTPTVFAE 286 Query: 297 PKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 356 + A G++T + T L+D G +E + + + + + + R IAE+ +P Sbjct: 287 LPKLLERAGPGTGSGNITGLFTVLVD-GDDHNEPVADAVRSILDGHIVMERSIAERGRYP 345 Query: 357 AIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 AI+ +S +R + E ++ ++R+ M D ME LI A +D Sbjct: 346 AINVLKSVSRT---MPDCNEAEENELIRRARALMATYDDMEELIRLGAYRPGSD 396 >UniRef50_O67531 Flagellum-specific ATP synthase n=3 Tax=Aquificaceae RepID=FLII_AQUAE Length = 443 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 19/252 (7%) Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 D R ++ +G+GQ+ I A GK+ LL I + ++ D V++ L I ER E Sbjct: 147 DTGVRSVNALFTLGKGQKIGIFAGAGVGKSTLLGMITR---HSKADVVVLAL-IGERGRE 202 Query: 216 VTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 268 V E V GE VV ST D+ V+ A + A KDV++L+DSIT Sbjct: 203 VKEFLEEVLGEEGLKKSVVVVSTADQSPILKVKGAISAVVHAHHFASQGKDVLLLMDSIT 262 Query: 269 RLARAYNTVVPASGK--VLTGGVDA--NALHRPKRFFGAARNVEEGGSLTIIATALIDTG 324 RLA A + A+G+ L G + L R GA + GS+T I T L++ Sbjct: 263 RLALAQREIGLAAGEPPTLKGFTPSVFQLLTRIAESCGAFKK----GSITGIFTVLVEGD 318 Query: 325 SKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILR 384 + I + G + + LSRK A + +FPA+D RS +R L ++E K + Sbjct: 319 DISLDPIADSLMGVLDGHIILSRKRAVRGLFPAVDPVRSLSRLMPKLVSEEHFMKANFFK 378 Query: 385 KIIHPMGEIDAM 396 +++ +++ + Sbjct: 379 EVLSKFEDVEEL 390 >UniRef50_D1BD12 Type III secretion system ATPase, FliI/YscN n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BD12_SANKS Length = 459 Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 76/281 (27%), Positives = 126/281 (44%), Gaps = 23/281 (8%) Query: 120 NFDKPENARNKILFENLTPLHANSRLRMERGNGSTE-DLTARVLDLASPIGRGQRGLIVA 178 +P + R ++ PL + +ER + L R LD + +GRGQR + A Sbjct: 124 GLGRPLDGRGPLVGTTTVPLDGRAPHPLERQRVAQPLTLGVRTLDTLTTVGRGQRMGLFA 183 Query: 179 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVAST 231 GK+ LL +A+ V ++ L+ ER EV E + L + VV +T Sbjct: 184 GSGVGKSTLLSMVARGTDA----AVSVIALVGERGREVREFLEDDLGPEGLARSVVVVAT 239 Query: 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDA 291 DEPA ++ A + A+ E +DV++++DS+TR+A A + + G A Sbjct: 240 SDEPALVRLRAAFVATRIAESFRESGEDVVLMMDSLTRVAMAQREI-----GLSVGEPPA 294 Query: 292 NALHRPKRFFGAARNVEEG-----GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 + P F A +E GS+T I T L+D G +E I + + + + L Sbjct: 295 TRGYPPSTFSVLAELLERAGTSARGSVTGIYTVLVD-GDDHNEPIADAARSILDGHVVLD 353 Query: 347 RKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKII 387 R++A FP+ID S +R +T+ + LRK++ Sbjct: 354 RRLAVAGHFPSIDALGSISRVATRVTSAAQRADATALRKVM 394 >UniRef50_Q1D9L1 ATPase, FliI/YscN family n=2 Tax=Cystobacterineae RepID=Q1D9L1_MYXXD Length = 437 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 75/269 (27%), Positives = 122/269 (45%), Gaps = 42/269 (15%) Query: 143 SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC 202 +R R+ER L R +D +G GQR + A GK+ L+ IA++ + Sbjct: 135 TRQRIER----PLPLGVRCIDGLLTVGEGQRVGLFAGSGVGKSTLMGQIARNTKAD---- 186 Query: 203 VLMVLLIDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVE 255 + +V LI ER EV E GE +V +T D+P+ ++ A + A+ E Sbjct: 187 LCVVALIGERGREVREFIEDAMGEEGMKRSVLVCATSDQPSLVRLRAAYVATAIAEYFRE 246 Query: 256 HKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVE-----EG 310 +V+ +LD++TRLARA + A G+ A + P F R +E E Sbjct: 247 RGGNVLFMLDTVTRLARAQREIGLAVGE-----PPARQGYPPSVFSMLPRILERTGNSEK 301 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAI------------ 358 G T I T L+ G M+E I +E +G + L+R + E+ +PA+ Sbjct: 302 GKCTAIYTCLV-AGGDMEEPIADEVRGILDGHFILNRALGERNQWPAMDVLASLSRVMSG 360 Query: 359 ----DYNRSGTRKEELLTTQEELQKMWIL 383 D+ ++ R ELL+T E+ + + +L Sbjct: 361 IVSKDHKKAAGRLRELLSTYEKQRDLILL 389 >UniRef50_P80153 Probable ATP synthase hrpB6 n=230 Tax=Bacteria RepID=HRPB6_XANEU Length = 442 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 128/288 (44%), Gaps = 19/288 (6%) Query: 120 NFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA-RVLDLASPIGRGQRGLIVA 178 +P + + I + P+ A + M R T R++D +G GQR I A Sbjct: 111 GLGEPSDGQGAIACDTWVPIQAQAPDPMRRRLIEHPMPTGVRIVDGLMTLGEGQRMGIFA 170 Query: 179 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE-------VVAST 231 GK+ L+ A+ + V +++LI ER EV E L+ G VV +T Sbjct: 171 AAGVGKSTLMGMFARGTQCD----VNVIVLIGERGREVREFIELILGADGLARSVVVCAT 226 Query: 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVD 290 D + + A + A+ + V++++DS+TR ARA + A+G+ T G Sbjct: 227 SDRSSIERAKAAYVGTAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPTRRGFP 286 Query: 291 ANALHRPKRFFGAARNVEEGGSLTIIATALI--DTGSKMDEVIYEEFKGTGNMELHLSRK 348 + R A + E GS+T T L DTGS + I EE +G + L LSR+ Sbjct: 287 PSVFAELPRLLERA-GMGESGSITAFYTVLAEDDTGS---DPIAEEVRGILDGHLILSRE 342 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 IA K +PAID S +R + + Q LR+++ E++ + Sbjct: 343 IAAKNQYPAIDVLASLSRVMSQIVPYDHSQAAGRLRRLLAKYNEVETL 390 >UniRef50_A6W8K0 ATPase, FliI/YscN family n=44 Tax=Bacteria RepID=A6W8K0_KINRD Length = 453 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 76/263 (28%), Positives = 117/263 (44%), Gaps = 23/263 (8%) Query: 138 PLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 196 PLHA M RG + L R LD P GRGQR I A GK+ LL IA+ + Sbjct: 136 PLHATPPPAMTRGRVDAPLSLGVRALDTLVPAGRGQRFGIFAGSGVGKSSLLSMIARGTS 195 Query: 197 YNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEK 249 + V ++ L+ ER EV E + L + VV +T DE ++ + Sbjct: 196 AD----VSVLALVGERGREVREFLEDDLGPEGLARSVVVIATSDEAPVLRLRASLTATTV 251 Query: 250 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEE 309 A+ + D ++++DS+TR+A A + + G A + P F R +E Sbjct: 252 AESFRDMGADCVLMMDSLTRVAMAQREI-----GLSVGEPPATRGYPPSVFALMPRLLER 306 Query: 310 G-----GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 GS+T I T L+D G +E I + + + + L R++A FP ID S Sbjct: 307 AGPGVTGSITGIYTVLVD-GDDHNEPIADNARSILDGHVVLDRRLATAGHFPTIDVLESV 365 Query: 365 TRKEELLTTQEELQKMWILRKII 387 +R +TT E+ LR+++ Sbjct: 366 SRVAGRVTTPEQKSAATALRRVM 388 >UniRef50_Q12T73 ATPase FliI/YscN n=1 Tax=Shewanella denitrificans OS217 RepID=Q12T73_SHEDO Length = 436 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 23/227 (10%) Query: 155 EDLTARV--LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 212 E LT R+ LD PIG+GQR I+A GK+ LL ++ S A + V++++L+ ER Sbjct: 137 EPLTTRIKALDSFIPIGKGQRVGILAGSGVGKSTLLAMMSDSCA--QQNAVIVIVLVGER 194 Query: 213 PEEVTE------MQRL-VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLD 265 EV E +RL + +VA+T +E V + + A+ L K+VI ++D Sbjct: 195 GREVEEFVNGKMFKRLRSRAVLVAATAEEMPVTRVLAVKYGLALAESLSAEGKEVIFVVD 254 Query: 266 SITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGG------SLTIIATA 319 S+TR+A A + A G+ T + P F R VE G S+T + + Sbjct: 255 SLTRVAMAQREIGLAIGEPPTA-----KGYTPSVFSLLQRIVERCGAFRHRASITALFSV 309 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 L++T D+ I + + + + L R +AE+ FPAID RS +R Sbjct: 310 LVET-DDFDDPIVDTLRAVLDGHIVLDRALAEQGHFPAIDVLRSVSR 355 >UniRef50_C1A560 Flagellum-specific ATP synthase n=6 Tax=Bacteria RepID=C1A560_GEMAT Length = 457 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 113/225 (50%), Gaps = 14/225 (6%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R +D IGRGQR I A GK+ +L +A+S + V ++ L+ ER EV E Sbjct: 160 RAIDGLLTIGRGQRVGIFAGSGVGKSTMLGMVARSAKAD----VNVIALLGERGREVREF 215 Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 + L + V+ +T D+ A + A + A+ + K+V++++DS+TR+A Sbjct: 216 LENSLGAEGLARSVVIVATGDQAALVRARGALVATAIAEYFRDQGKEVLLMVDSVTRVAM 275 Query: 273 AYNTVVPASGK-VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVI 331 A+ + A+G+ T G + R A N E GG +T I T L+D G +E + Sbjct: 276 AWREIGLATGEPPTTKGYPPSVFANLPRLLERAGNGERGG-ITGIYTVLVD-GDDFNEPV 333 Query: 332 YEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEE 376 + + + + L+R++A + FPAID S +R ++ +T + + Sbjct: 334 ADAARSILDGHIVLTRRLAAQNHFPAIDVLDSKSRVKDHITNEAQ 378 >UniRef50_B9L4D4 Flagellar protein export ATPase FliI n=13 Tax=Bacteria RepID=B9L4D4_THERP Length = 450 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 111/224 (49%), Gaps = 14/224 (6%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE- 218 R +D GRGQR I A GK+ LL I+++ + V ++ LI ER EV E Sbjct: 151 RTIDALLTCGRGQRLGIFAGSGVGKSTLLGMISRNAVCD----VRVIALIGERGREVQEF 206 Query: 219 MQR------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 ++R L + VV ST D+PA ++ A A+ + V++++DS+TRLA Sbjct: 207 IERDLGPAGLEQAVVVVSTSDQPALMRIKAAWTATLIAEYFRDRGMSVVLMMDSVTRLAM 266 Query: 273 AYNTVVPASGK-VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVI 331 A V A+G+ T G + R A N E+ GS+T T L++ G ++E I Sbjct: 267 AQREVGLAAGEPPATRGYPPSVFALLPRLLERAGNAEQ-GSITAFYTVLVE-GDDLNEPI 324 Query: 332 YEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQE 375 + +G + + L+R +A++ +PAID S +R L T + Sbjct: 325 SDTVRGILDGHIVLARTLADRGHYPAIDVLASVSRLMPSLVTPD 368 >UniRef50_O83417 Flagellum-specific ATP synthase n=106 Tax=Bacteria RepID=FLII_TREPA Length = 447 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 118/247 (47%), Gaps = 22/247 (8%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 RVLD +G GQR I + GK+ L+ IA+ N V ++ LI ER EV + Sbjct: 149 RVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIAR----NTDADVSVIALIGERGREVMDF 204 Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 + L + +V++T DE V+ A A+ + K V++L DS+TR A+ Sbjct: 205 VAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQGKQVLLLFDSLTRFAK 264 Query: 273 AYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEG-----GSLTIIATALIDTGSKM 327 A + ASG+ + A + P F + +E GS+T T L+D G + Sbjct: 265 AQREIGLASGE-----LPATRGYTPGVFETLPKLLERAGSFSMGSVTAFYTVLVD-GDDL 318 Query: 328 DEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKII 387 DE I + +G + + LSR +A++ +PAID +S +R + + + + I+R+ + Sbjct: 319 DEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMKEAVRIVRRAL 378 Query: 388 HPMGEID 394 E++ Sbjct: 379 AVYAEVE 385 >UniRef50_B3Q296 Type III secretion system ATP synthase protein n=5 Tax=Rhizobium/Agrobacterium group RepID=B3Q296_RHIE6 Length = 439 Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 113/241 (46%), Gaps = 17/241 (7%) Query: 168 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE-----MQRL 222 G+GQR I P AGK+ L ++Q +A N D V++ L+ ER EV E M Sbjct: 159 CGQGQRIGIFGAPGAGKSTL---VSQIVANNKAD-VIVCALVGERGREVGEFVAGNMPEG 214 Query: 223 VKGEV--VASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA 280 V V V +T D PA + A+ E K V++++DS+TR+ARA V A Sbjct: 215 VPSNVTLVVATSDRPALERFKAVMTATAIAEYFREQGKHVLLVIDSVTRMARALREVGLA 274 Query: 281 SGK-VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTG 339 +G+ + G + + F A N G +T T L++ G + D+ I EE + Sbjct: 275 AGEPPVRRGFPPSVFAVLPQIFERAGN-SANGMMTAFYTVLVE-GEEQDDPIAEETRSLL 332 Query: 340 NMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 + + LS KIA+ FPAID S +R + ++ Q LR + + D +E L Sbjct: 333 DGHIVLSDKIAKAGNFPAIDVLASRSRTMSAVVSESHRQAADRLRAL---LALYDEVELL 389 Query: 400 I 400 I Sbjct: 390 I 390 >UniRef50_Q9I4N1 Flagellum-specific ATP synthase n=174 Tax=Proteobacteria RepID=FLII_PSEAE Length = 451 Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 112/240 (46%), Gaps = 18/240 (7%) Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 D+ R ++ +GRGQR + A GK++LL + + + D +++V LI ER E Sbjct: 153 DVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTR---FTRAD-IIVVGLIGERGRE 208 Query: 216 VTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 268 V E + GE VVAS D+ ++ A+ A+ + K+V++L+DS+T Sbjct: 209 VKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDSLT 268 Query: 269 RLARAYNTVVPASGK-VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKM 327 R A+A + A G+ T G + + + A N E GG ++ G Sbjct: 269 RYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTVLSEGDDQ 328 Query: 328 DEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR------KEELLTTQEELQKMW 381 + I + +G + LSR++AE+ +PAID S +R + E L + +++W Sbjct: 329 QDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVVEAEHLRDAQRFKQLW 388 >UniRef50_UPI0001854468 transcription termination factor Rho n=1 Tax=Helicobacter pylori HPKX_438_AG0C1 RepID=UPI0001854468 Length = 73 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 50/70 (71%) Query: 347 RKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMT 406 R IA++R++PA D +SGTRK+ +L ++ L K+W+LR ++ M +I+A+ F+ +K+ T Sbjct: 1 RNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQT 60 Query: 407 KTNDDFFEMM 416 K N++F +M Sbjct: 61 KDNEEFLNLM 70 >UniRef50_Q5DY25 Lateral flagellar export/assembly protein (LfiI-like) n=78 Tax=Proteobacteria RepID=Q5DY25_ECOLX Length = 445 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 13/226 (5%) Query: 168 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------Q 220 IG+GQR ++A GK++LL I + + +++V LI ER EV E Sbjct: 157 IGKGQRVGLMAGSGVGKSVLLGMITRQTKAD----IVVVGLIGERGREVKEFIDHSLGAD 212 Query: 221 RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA 280 L K VV + DE ++ E+ A + V++L+DS+TR A A + + Sbjct: 213 GLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALS 272 Query: 281 SGK-VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTG 339 G+ T G +A + +A N E GS+T I T L + + D ++ + + Sbjct: 273 LGEPPATKGYPPSAFGMIPKLVESAGNSESSGSMTAIYTVLAEGDDQQDPIV-DCARAVL 331 Query: 340 NMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRK 385 + + L+RK+AE +PAID +S +R +T+ E Q L++ Sbjct: 332 DGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQ 377 >UniRef50_B8H363 Flagellum-specific ATP synthase n=5 Tax=Alphaproteobacteria RepID=FLII_CAUCN Length = 444 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 71/246 (28%), Positives = 113/246 (45%), Gaps = 35/246 (14%) Query: 140 HANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 199 HA R+ G DL R +++ + RGQR I A GK++LL +A+ + Sbjct: 132 HARGRV------GERLDLGVRSMNVFTTTCRGQRLGIFAGSGVGKSVLLSMLAKEATCD- 184 Query: 200 PDCVLMVLLIDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKR 252 ++V LI ER EV E GE VV +T DEPA Q A M + ++ Sbjct: 185 ---AVVVGLIGERGREVREFVEETLGEEGLRRAVVVVATSDEPALTRRQAAYMTLAISEF 241 Query: 253 LVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGG- 311 + + ++V+ L+DS+TR A A + A+G+ T + P F + +E G Sbjct: 242 MRDQDQEVLCLMDSVTRFAMAQREIGLAAGEPPT-----TKGYTPTVFTELPKLLERAGP 296 Query: 312 -----------SLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 +T + T L+D G +E I + +G + + + R IAE+ FPAI+ Sbjct: 297 GPIRPDGTTAAPITALFTVLVD-GDDHNEPIADATRGILDGHIVMERAIAERGRFPAINV 355 Query: 361 NRSGTR 366 +S +R Sbjct: 356 LKSISR 361 >UniRef50_A0AGH1 Complete genome n=21 Tax=Listeria RepID=A0AGH1_LISW6 Length = 433 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 78/295 (26%), Positives = 137/295 (46%), Gaps = 30/295 (10%) Query: 138 PLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 197 P+HA SR + T + + +D IG GQ+ I A GK+ LL IA+ Sbjct: 128 PIHAFSRAEITE----TLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIAR---- 179 Query: 198 NHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKA 250 N + ++ L+ ER EV + R L K +VA+T DE ++ A++ A Sbjct: 180 NAKADINIIGLVGERGREVKDFLRKDLGEEGLQKSVIVAATSDESHLMQLRAAKLATSIA 239 Query: 251 KRLVEHKKDVIILLDSITRLARAYNTV------VPASGKVLTGGVDANALHRPKRFFGAA 304 + + K V++++DS+TR A A +V +P GK L + + + + G Sbjct: 240 EHFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLPIGGKTL---LMESYMKKLLERSGKT 296 Query: 305 RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 +N GS+T I T L+D G M+ + + +G + + L+R++A K +PAID S Sbjct: 297 QN----GSITGIYTVLVD-GDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSV 351 Query: 365 TRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419 +R E + + + + +R+ + E + + F + + T N F ++S Sbjct: 352 SRVMEEIVPESQWKTASKIREWMSIYQE-NELYFKLGTIEQTSDNAAIFTSKEKS 405 >UniRef50_C8WBT8 ATPase, FliI/YscN family n=7 Tax=Sphingomonadales RepID=C8WBT8_ZYMMN Length = 443 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 79/276 (28%), Positives = 125/276 (45%), Gaps = 15/276 (5%) Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTE-DLTARVLDLASPIGRGQRGLIVAP 179 +P + I+ + PL + RG + D+ R ++ G GQR I+A Sbjct: 112 LGEPLDNLGPIITDEYWPLVGKMGNPLNRGRVTQPFDMGVRAINALLTAGVGQRIAIMAG 171 Query: 180 PKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL-------VKGEVVASTF 232 GK++L+ Q IA D V++ LI ER EVT+ K VVA Sbjct: 172 SGVGKSVLM---GQMIAGAKAD-VIVTGLIGERSREVTDFVETKISDDVRPKSVVVAVPA 227 Query: 233 DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDA 291 D P ++ A A+ K+V++L+DS+TR+A A V + G+ T G Sbjct: 228 DHPPVLRLRAAMRATAIAEYFRAKGKNVLLLIDSLTRIAHAQREVGLSLGEPPTIKGYPP 287 Query: 292 NALHR-PKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA 350 +AL P+ A ++ G++T I T L D G D+ I + + + + LSR +A Sbjct: 288 SALGLIPRLVERAGIDIHSKGAITAIYTVLAD-GDDPDDPIVDTARAIVDGHIILSRSLA 346 Query: 351 EKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKI 386 E+ VFPAID +S +R + + Q LR++ Sbjct: 347 EQGVFPAIDLGKSLSRVMSDIISPGHRQAAAHLRRL 382 >UniRef50_Q52371 Type III secretion ATP synthase hrcN n=14 Tax=Pseudomonas RepID=HRCN_PSESY Length = 449 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 20/218 (9%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL-LIDERPEEVTE 218 R +D A +G GQR + A GKT L+ +A+++ DC ++V LI ER E+ E Sbjct: 157 RAIDSAILLGEGQRVGLFAGAGCGKTTLMAELARNM-----DCDVIVFGLIGERGRELRE 211 Query: 219 ---------MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 269 ++R + +V +T D + + A A+ + V++LLDS+TR Sbjct: 212 FLDHELDETLRR--RSVLVCATSDRSSMERARAAFTATAIAEAFRARGQKVLLLLDSLTR 269 Query: 270 LARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMD 328 ARA + ASG+ L GG+ + R A + E GS+T + T LI+ S M+ Sbjct: 270 FARAQREIGIASGEPLGRGGLPPSVYTLLPRLVERA-GMSENGSITALYTVLIEQDS-MN 327 Query: 329 EVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 + + +E + + + LSRK+AE+ +PAID + S +R Sbjct: 328 DPVADEVRSLLDGHIVLSRKLAERGHYPAIDVSASISR 365 >UniRef50_O34171 Flagellum-specific ATP synthase n=19 Tax=Alphaproteobacteria RepID=FLII_AGRT5 Length = 473 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 23/242 (9%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R +D+ SP+ GQR I A GK+ LL +A++ A++ +++ L+ ER EV E Sbjct: 169 RAIDIFSPLCLGQRLGIFAGSGVGKSTLLSMLAKADAFDK----VVIALVGERGREVREF 224 Query: 220 QRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD----VIILLDSIT 268 G+ VVA++ + P R +M A + EH +D V++++DS+T Sbjct: 225 IEDTMGDNMSKSVAVVATSDESPMLR-----KMAPLSAVTIAEHFRDQGDNVLLIIDSVT 279 Query: 269 RLARAYNTVVPASGK-VLTGGVDANALHRPKRFFGAARNVEEG-GSLTIIATALIDTGSK 326 R A A V ASG+ + G A+ R A EG G++T I + L+D G Sbjct: 280 RFAHAIREVAVASGEPPVARGYPASVFTELPRLLERAGPGAEGTGTITAIVSILVD-GDN 338 Query: 327 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKI 386 ++ I + +G + + L R +AE+ +P I+ S +R + T ++ + + L+ + Sbjct: 339 HNDPIADSTRGILDGHIVLDRSLAEEGRYPPINPLASISRLAKKAWTPDQEKLVSRLKAL 398 Query: 387 IH 388 +H Sbjct: 399 VH 400 >UniRef50_P52607 Flagellum-specific ATP synthase n=21 Tax=Borrelia RepID=FLII_BORBU Length = 436 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 84/304 (27%), Positives = 139/304 (45%), Gaps = 44/304 (14%) Query: 126 NARNKILFENLTPLHANSRLRMERGNGSTEDLTA-RVLDLASPIGRGQRGLIVAPPKAGK 184 N+ +++FE + P++ R + LT +VLD P+ +GQR I + GK Sbjct: 120 NSYKELIFEKINPIN--------RSIFEDQILTGVKVLDGFLPVAKGQRVGIFSGSGVGK 171 Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDE-PA 236 + LL IA+ N V ++ I ER E+ E +RL K +V ST DE P Sbjct: 172 STLLGMIAK----NSNADVNVIAFIGERGRELNEFIEHELGEERLKKSVLVVSTSDESPI 227 Query: 237 SRH--VQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK--VLTGGVDAN 292 SR+ VA M+ E + E KDV +L DSITR A A + + G+ V G + Sbjct: 228 SRYKGAYVATMIAEYFR---EQGKDVALLFDSITRFANAKREMSLSLGEPPVAKGYPPSV 284 Query: 293 ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 + P + N GGS+T T L++ G E + + K + + L R + ++ Sbjct: 285 FVEIPILLERSGFN-GNGGSVTGFYTVLVE-GDDFTEPVADNIKAVLDGHIILDRDLFDR 342 Query: 353 RVFPAIDYNRSGTR---------KEELLTTQEELQKMW-----ILRKIIHPMGEIDAMEF 398 ++P+I+ S +R K++L+ L ++ ++R I+ G ++F Sbjct: 343 GIYPSINVLSSTSRSIHRIMSLEKQKLIMKARNLLSIYKDYEDLIRTGIYLKGSNKDVDF 402 Query: 399 LINK 402 I+K Sbjct: 403 AISK 406 >UniRef50_Q1GNY4 ATPase FliI/YscN n=3 Tax=Bacteria RepID=Q1GNY4_SPHAL Length = 443 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 74/259 (28%), Positives = 116/259 (44%), Gaps = 27/259 (10%) Query: 124 PENARNKILFENLTPLHANSRLRMERGNGSTE-DLTARVLDLASPIGRGQRGLIVAPPKA 182 P + R I + PL + RG + ++ R ++ +G GQR I+A Sbjct: 115 PLDGRPAIKSQFQWPLAGRKVNPLRRGRVTRALNMGVRAINGLLTVGEGQRVAIIAGSGV 174 Query: 183 GKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEP 235 GK++L+ Q IA D V++V LI ER EV++ K VVA D P Sbjct: 175 GKSVLM---GQMIAGTECD-VIVVGLIGERSREVSDFVETKLPPDVRKKSVVVAVPADHP 230 Query: 236 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALH 295 ++ A A+ K V++L+DS+TR+A A + LT G Sbjct: 231 PLLRLRAAMRATAIAEAFRAEGKKVLLLIDSLTRVAHAQREIG------LTLGEPPTMKG 284 Query: 296 RPKRFFGAARNVEE--------GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSR 347 P F ++ E GGS+T + T L D G +D+ + + + + + LSR Sbjct: 285 YPPSVFALIPSLCERAGIDKATGGSVTALYTVLAD-GGDIDDPVVDSARAIVDGHIILSR 343 Query: 348 KIAEKRVFPAIDYNRSGTR 366 ++AE+ V+PAID RS +R Sbjct: 344 QLAEQGVYPAIDVARSLSR 362 >UniRef50_Q65JM5 Flagellar-specific ATP synthase n=9 Tax=Bacteria RepID=Q65JM5_BACLD Length = 437 Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 22/219 (10%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R +D +G+GQR I A GK+ L+ IA+ A + + ++ L+ ER EV E Sbjct: 146 RSIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARETAAD----LNVIALVGERGREVREF 201 Query: 220 QRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 GE VV +T D+PA ++ A A+ + ++V+ ++DS+TR+A Sbjct: 202 IEKDLGEEGLKRTIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVMFMMDSVTRVAM 261 Query: 273 AYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVE-----EGGSLTIIATALIDTGSKM 327 A + A+G+ T + P F + +E E GS+T T L+D G M Sbjct: 262 AQREIGLATGEPPT-----TKGYTPSVFAILPKLLERTGTTESGSITAFYTVLVD-GDDM 315 Query: 328 DEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 +E I + +G + + L R +A K FPA++ +S +R Sbjct: 316 NEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISR 354 >UniRef50_C7R0J8 ATPase, FliI/YscN family n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R0J8_JONDD Length = 446 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 104/222 (46%), Gaps = 22/222 (9%) Query: 157 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV 216 L RV+D + +GRGQR + A GK+ LL IA+ V ++ LI ER EV Sbjct: 144 LGVRVMDTLTSVGRGQRMGLFAGSGVGKSTLLSMIARGTDAQ----VSVIALIGERGREV 199 Query: 217 TEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 269 E + L + VV +T D+PA + A A+ L + DV++++DS+TR Sbjct: 200 REFLEDDLGPEGLARSIVVIATSDQPALMRQRAAFTATRIAQWLAQMGNDVVLMMDSLTR 259 Query: 270 LARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGS-----LTIIATALIDTG 324 +A A + + G A + P F A +E GS +T + T L+D G Sbjct: 260 VAMAQREI-----GLSVGEPPATRGYPPSTFSVLANLLERAGSAEQGTVTGLYTVLVD-G 313 Query: 325 SKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 +E I + + + + L RK+A + +PAID S +R Sbjct: 314 DDHNEPIADAARSILDGHVVLDRKLAVRGHYPAIDALASISR 355 >UniRef50_Q2LRZ2 Flagellum-specific ATP synthase n=20 Tax=Bacteria RepID=Q2LRZ2_SYNAS Length = 455 Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 14/252 (5%) Query: 124 PENARNKILFENLTPLHANSRLRMERGNGSTE-DLTARVLDLASPIGRGQRGLIVAPPKA 182 P + R I E PL+A + RG S D +VL+ G+GQR I A Sbjct: 122 PIDNRGPIDTEEEYPLYAEPINPLARGRISDPIDFGVKVLNGLFSCGKGQRMGIFAGSGV 181 Query: 183 GKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEP 235 GK++L+ IA++ + + + ++ LI ER EV E + L + VV + D Sbjct: 182 GKSVLMGMIARNTSAD----INVIGLIGERGREVREFLEKNLGKEGLARSVVVVAASDMH 237 Query: 236 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV-LTGGVDANAL 294 ++ A + ++ + +DV++++DS+TR A A + + G+ T G + Sbjct: 238 PLIRMRAAHVATTVSEYFRDQGRDVLLMVDSLTRFAMAQREIGLSVGEPPTTKGYTPSVF 297 Query: 295 HRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRV 354 + A VE GS+T + T L++ G +E I + + + L+LSR++A K Sbjct: 298 SLLPKLLERAGKVEGRGSITGLYTILVE-GDDFNEPISDAARSILDGHLYLSRELAAKNH 356 Query: 355 FPAIDYNRSGTR 366 +PA+D S +R Sbjct: 357 YPAVDVLNSISR 368 >UniRef50_A3V245 FliI, Flagellum-specific ATPase n=4 Tax=Rhodobacterales RepID=A3V245_9RHOB Length = 444 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 109/223 (48%), Gaps = 19/223 (8%) Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 D+ R ++ IG GQR I+A GK++LL +A+ Y D V+++ LI ER E Sbjct: 148 DVGVRAVNGLLTIGCGQRIGIIAGSGVGKSVLLGMMAR---YTSAD-VVVIGLIGERARE 203 Query: 216 VTEMQRLV-----KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH----KKDVIILLDS 266 V EM R + +G+V S PA R + +A L EH K+V++++DS Sbjct: 204 VGEMVRAIMQPATRGKV--SIIAVPADRSPLLRIRGARRATALAEHFRDQGKNVLLIMDS 261 Query: 267 ITRLARAYNTVVPASGKVLTG-GVDANALHR-PKRFFGAARNV-EEGGSLTIIATALIDT 323 +TR+A A + A G+ T G A+ + P A V GS+T I T L D Sbjct: 262 LTRVAHAQREIGLALGEAPTSKGYPASVISMIPNLIERAGMGVGPNAGSITGIYTVLADG 321 Query: 324 GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 D V+ + + + + LSR IA+ V+PAID S +R Sbjct: 322 DDSNDPVV-DTARAILDGHIVLSRSIAQMGVYPAIDIPASISR 363 >UniRef50_D2UDN1 Probable xanthomonas secretion apparatus protein n=1 Tax=Xanthomonas albilineans RepID=D2UDN1_XANAL Length = 449 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 14/223 (6%) Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLV 223 GQR I A +GK+ LL + I + V +V LI ER EV+E QR Sbjct: 173 GQRVGIFAAAGSGKSSLLSMLVGGIDAD----VAIVALIGERGREVSEFVEKMRHSQRAD 228 Query: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283 + VV +T D+ A A++ + A+ + V++ LDS+TR ARA + ASG+ Sbjct: 229 QLIVVYATSDQSAVERANAAKVAMAAAEFYRDRGMHVVVYLDSLTRYARAERDIALASGE 288 Query: 284 V-LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 V + G + R + A + GS+T T L+++ + D ++ +EF+ + Sbjct: 289 VPVKRGYPLSVFDRLPKLIERAGRIHV-GSITAFYTVLLESEEEAD-MVADEFRSLLDGH 346 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRK 385 ++LSR +AE +P+ID +S +R +T +++ RK Sbjct: 347 IYLSRGLAETHHYPSIDVLKSASRLFNAVTDEQQQMMAAAFRK 389 >UniRef50_Q2RX15 ATPase FliI/YscN n=35 Tax=Alphaproteobacteria RepID=Q2RX15_RHORT Length = 475 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 108/241 (44%), Gaps = 24/241 (9%) Query: 138 PLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 197 P A+SR R+ G DL R ++ RGQR I A GK+ ++ I Sbjct: 132 PPSAHSRQRV----GGKLDLGVRAINTFLTCCRGQRMGIFAGSGVGKSSVMSMF---IRN 184 Query: 198 NHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKA 250 + D ++M L + ER E E + L + V +T DE Q A M + A Sbjct: 185 TNADVIVMGL-VGERGREAREFIEDDLGEEGLKRAVTVVATSDESPLMRRQAAYMTLAVA 243 Query: 251 KRLVEHKKDVIILLDSITRLARAYNTVV-----PASGKVLTGGVDANALHRPKRFFGAAR 305 + + DV+ L+DS+TR A A + P + K T V A PK A Sbjct: 244 EYFRDQGLDVLCLMDSVTRFAMAQREISLSAGEPPASKGYTPTVFAEL---PKLLERAGP 300 Query: 306 NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT 365 VE GS+T + T L++ G +E I + +G + + L R IAE+ +PAI+ RS + Sbjct: 301 GVEGSGSITGLFTVLVE-GDDHNEPISDAVRGILDGHIVLDRAIAERGRYPAINILRSVS 359 Query: 366 R 366 R Sbjct: 360 R 360 >UniRef50_C0QZ72 Flagellar biosynthesis/type III secretory pathway ATPase n=34 Tax=Bacteria RepID=C0QZ72_BRAHW Length = 484 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 39/253 (15%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R +D +G+GQR I++ GK+ LL IA+ N V ++ LI ER EV + Sbjct: 159 RAIDGLLTVGQGQRMAIMSGTGVGKSTLLSMIAR----NTNADVNVIALIGERRREVRDF 214 Query: 220 QRLVKGE--------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLA 271 GE VVA++ D P R V+ A A+ + K+V+ ++DS+TR A Sbjct: 215 IERDLGEEGLKRSILVVATSDDAPLLR-VRAAYTATTIAEYFRDKGKNVMFMVDSVTRFA 273 Query: 272 RAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVE-----EGGSLTIIATALIDTGSK 326 A + + G+ T + P F A+ +E GS+T L++ G Sbjct: 274 LAQREIGLSRGEPPT-----TRGYTPSVFSELAKLLERTGTSSKGSITAFYNVLVE-GDD 327 Query: 327 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKI 386 +DE I + +G + + LSR +A + FPAID N+S +R I+ ++ Sbjct: 328 LDEPITDAVRGILDGHIVLSRDLANRGHFPAIDVNKSISR---------------IMNEV 372 Query: 387 IHPMGEIDAMEFL 399 + M + A EFL Sbjct: 373 VSNMHKRAAREFL 385 >UniRef50_Q6AGA5 Flagellum-like ATP synthase n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AGA5_LEIXX Length = 441 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 127/279 (45%), Gaps = 19/279 (6%) Query: 117 NEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLI 176 + ++ P +A + + +N P + R R++ + L R LD P+GRGQR + Sbjct: 109 HPIDGKGPLDATSCLPLDNAVP-NPLDRARID----TPLPLGVRALDTLIPVGRGQRLGL 163 Query: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVA 229 A GK+ LL IA+ + V ++ LI ER EV E L + VV Sbjct: 164 FAGSGVGKSSLLSMIARGTDAD----VFVLALIGERGREVREFLEDDLGADGLARSVVVV 219 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTGG 288 +T DEPA + A A+ ++ D ++++DS+TR+A A + ++G+ T G Sbjct: 220 ATSDEPALMRRRAAFAATRIAESFRDNGADAMLMMDSLTRVAMAQREIGLSAGEPPATRG 279 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 ++ A + GS+T + T L+D G +E I + + + + L RK Sbjct: 280 YPSSTFSTLASLLERAGTAKT-GSITGLYTVLVD-GDDHNEPIADAARSILDGHVLLDRK 337 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKII 387 +A FP+ID S +R + T + LRK++ Sbjct: 338 LAINGHFPSIDVLGSISRLAGKICTPGQQAAATALRKVM 376 >UniRef50_B8J143 ATPase FliI/YscN n=13 Tax=cellular organisms RepID=B8J143_DESDA Length = 504 Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 74/268 (27%), Positives = 129/268 (48%), Gaps = 24/268 (8%) Query: 136 LTPLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 194 L P++A+ ++R D+ R ++ +G+GQR I+A GK+ L+ +A+ Sbjct: 163 LVPIYADPPSPLQRPRITDILDVGVRSVNSLLTLGKGQRVGIMAGSGVGKSTLMGMMAR- 221 Query: 195 IAYNHPDCVLMVLLIDERPEEVTE-MQR------LVKGEVVASTFDEPASRHVQVAEMVI 247 Y D V ++ LI ER EV E M+R + + +V +T D+ ++ A Sbjct: 222 --YTRAD-VNVIALIGERGREVVEFMERDLGPEGMARSVLVIATSDQSPLVRMRAAYAAT 278 Query: 248 EKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT--GGVDANALHRPKRFFGAAR 305 A+ + DV++++DS+TR A A V A G+ T G PK A R Sbjct: 279 GVAEYFRDKGMDVLLMMDSVTRFAMAAREVGLAVGEPPTTKGYTPTVFAQLPKLLERAGR 338 Query: 306 NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT 365 + G++T I T L+D G +E I + + + + L+R +A++ FPAID RS + Sbjct: 339 SAR--GTITGIYTVLVD-GDDFNEPIADAVRSILDGHIVLTRDLADQGHFPAIDVLRSIS 395 Query: 366 R-------KEELLTTQEELQKMWILRKI 386 R ++++L+ + + M RK+ Sbjct: 396 RLRSDICDRQDVLSGRVVTRNMSTFRKV 423 >UniRef50_A8LMQ4 Flagellum-specific ATP synthase n=32 Tax=Rhodobacterales RepID=A8LMQ4_DINSH Length = 450 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 119/262 (45%), Gaps = 35/262 (13%) Query: 167 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE-------- 218 P+ RGQR + A GK+ LL + +S+ + + +V LI ER EV E Sbjct: 155 PLVRGQRLGLFAGSGVGKSTLLGKLTRSVQAD----IAVVALIGERGREVREFVDRTLGA 210 Query: 219 --MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT 276 M+R + VVA+T D+ + A + + A+ + V+ L DS+TR A A+ Sbjct: 211 DGMKRAI---VVAATSDQAPLLKRRAAWLAMSIAEYFRDLGGHVLFLTDSVTRFAEAHRE 267 Query: 277 VVPASGKV--------LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMD 328 V +G+ TG + + R A E G +T I + L+ GS MD Sbjct: 268 VALTAGEAPSMRGFPPSTGQMIMDLAER------AGPGPEGKGDITGIFSVLV-AGSDMD 320 Query: 329 EVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIH 388 E + + +G + + LSR+IAE+ FPA+D +S +R + E + + + R+ Sbjct: 321 EPVADILRGVLDGHVVLSREIAERGRFPAVDVLQSVSRSLPDAASAAENELLQLARRT-- 378 Query: 389 PMGEIDAMEFLINKLAMTKTND 410 MG + +I T+ +D Sbjct: 379 -MGIYERSRLMIQSGLYTQGSD 399 >UniRef50_Q2NVI5 Type III secretion apparatus SpaL/InvC n=11 Tax=Proteobacteria RepID=Q2NVI5_SODGM Length = 435 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/215 (29%), Positives = 100/215 (46%), Gaps = 14/215 (6%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R +D G GQR I A GKT L+ + I ++ D V +V LI ER EVTE Sbjct: 147 RAIDGLLTCGHGQRLGIFAAAGCGKTSLMNML---IEHSEAD-VYVVGLIGERGREVTEF 202 Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 R K +V ST D + A++ A+ + K+V++ +DSITR AR Sbjct: 203 IEELKHSSRSGKVVLVNSTSDRSSVERCNAAQVATTVAEYFRDQGKNVLLFIDSITRYAR 262 Query: 273 AYNTVVPASGKV-LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVI 331 A + + G++ G A+ R + + GS+T T L++ + D I Sbjct: 263 ALRDMALSMGELPARRGYPASVFERLPKLLERP-GSSQLGSITAFYTVLLENEEEPD-AI 320 Query: 332 YEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 +E + + ++LS +A + +PAID RS +R Sbjct: 321 GDEVRSILDGHIYLSHTLAAQGHYPAIDILRSTSR 355 >UniRef50_C7UQS9 Transcription termination factor Rho n=1 Tax=Enterococcus faecalis X98 RepID=C7UQS9_ENTFA Length = 90 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 7/79 (8%) Query: 341 MELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEF-- 398 MEL LSR++AE+R+FPAID +S TRKEELL T E+L++ W LR + D++E+ Sbjct: 1 MELRLSRELAERRIFPAIDIKKSSTRKEELLMTPEQLEETWKLRNNMSG----DSLEYTD 56 Query: 399 -LINKLAMTKTNDDFFEMM 416 I L T+ N FE+ Sbjct: 57 QFIKMLKRTQNNQQLFEVF 75 >UniRef50_A6GN32 Type III secretion protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GN32_9BURK Length = 461 Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 125/259 (48%), Gaps = 18/259 (6%) Query: 120 NFDKPENARNKILF--ENLTPLHANSRLRMERGNGSTEDLT-ARVLDLASPIGRGQRGLI 176 N D P + R+ +L + P+ + +R S +T RV+D +G GQR I Sbjct: 118 NLDHPNDRRSGVLSVDSDARPVIQVAPPASKRPPVSESLVTKVRVIDGLLTLGIGQRVGI 177 Query: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE-MQRLVKGEV------VA 229 APP GK+ L+ AQ + + D V+ L + ER E+ E +++ + E+ V Sbjct: 178 FAPPGCGKSTLM---AQIVRGANVDAVVFGL-VGERGRELREFIEKEITDEIRKKSFFVC 233 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGV 289 +T D A V+ A A+ L + K V++++DS+TRLARA + +G+ T Sbjct: 234 ATSDRSAIERVRAAFTATSIAEYLRDQGKSVLLVVDSLTRLARAQRELGLMAGEPATQAG 293 Query: 290 DANALHR--PKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSR 347 +++ P+ + R E G +T + T L++ D+ I E K + + LS Sbjct: 294 FTPSVYSILPELIERSGRT--EQGDITAVFTVLMEGERIEDDPIASEAKSLLDGHIVLST 351 Query: 348 KIAEKRVFPAIDYNRSGTR 366 K+ E+ FPAID +S +R Sbjct: 352 KLVERSHFPAIDPLKSLSR 370 >UniRef50_C6N705 Flagellar protein export ATPase FliI n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N705_9GAMM Length = 430 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 103/227 (45%), Gaps = 13/227 (5%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 + +D P+G+GQR I A GK+ LL + Q++ + ++ LI ER EV + Sbjct: 141 QAIDSLLPLGKGQRIGIFAGSGVGKSTLLGTMVQNLQSE----INVIALIGERGREVNDF 196 Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 L K +V S DE A Q A+ + K V++ +DSITR A Sbjct: 197 IVNHLDEATLKKSVLVVSCSDESALMRRQAVYTATAIAEYFCQQSKQVMLFMDSITRFAM 256 Query: 273 AYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVI 331 A + + G+ T G + N +E GS++ + T L++ G +E + Sbjct: 257 AQREISLSLGEPPTARGYTPSVFALLPGIIERTGNFKEQGSISALYTVLVE-GDDFNEPL 315 Query: 332 YEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQ 378 + + + + L+R++A++ +PAI +S +R + + EE Q Sbjct: 316 ADHMRALLDGHIVLTRELAQRGHYPAISILQSVSRLAKHIVAPEEQQ 362 >UniRef50_D2TY23 Type III secretion cytoplasmic ATP synthase (YscN,SpaL,MxiB,HrcN,EscN) n=1 Tax=Arsenophonus nasoniae RepID=D2TY23_9ENTR Length = 457 Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 100/211 (47%), Gaps = 22/211 (10%) Query: 168 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------Q 220 +G GQR I A GK+ LL +A+ + V+++ L+ ER EV E Sbjct: 178 LGVGQRIGIFAAAGGGKSTLLGMLARGCEAD----VVVLALVGERGREVREFLDNHLPAT 233 Query: 221 RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA 280 K +V +T D P ++ + A+ + K V++L+DS+TR ARA + A Sbjct: 234 ARKKTILVVATSDRPPLERMKASLTATTIAEYFRDQGKQVLLLVDSLTRFARAAREIGLA 293 Query: 281 SGKVLTGGVDANALHRPKRFFGAARNVEEG-----GSLTIIATALIDTGSKMDEVIYEEF 335 +G+ AN P F A +E GS++ I T L++ G M+E + +E Sbjct: 294 AGEPPV----ANGFP-PSVFVHMAALLERAGPAKVGSISAIYTVLVE-GDNMNEPVADEV 347 Query: 336 KGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 + + + LSR++A FPAID N S +R Sbjct: 348 RSILDGHIVLSRQLAAAGHFPAIDVNASVSR 378 >UniRef50_D2LCY5 ATPase, FliI/YscN family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LCY5_RHOVA Length = 459 Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 13/236 (5%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 RV+D+ +P+ GQR I A GK+ LL + + +++ V + I ER EV E Sbjct: 168 RVIDVFTPLCAGQRIGIFAGSGVGKSTLLSMLTRGSSFD----VTVFAAIGERGREVREF 223 Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 L K +V ST DE A+ A+ + + V+++ DS+TR A Sbjct: 224 IDDTLAKAGLAKAVLVVSTSDESPMMRRLAAKTAFTVAEYFRDEGQRVLLVFDSVTRYAH 283 Query: 273 AYNTVVPASGK-VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVI 331 A + +SG+ ++ G + + A N GS+T + + L+D G ++ + Sbjct: 284 AVREIALSSGEPPVSRGYPPSVFTDLPKLLERAGNASGTGSITGVFSVLVD-GDDHNDPV 342 Query: 332 YEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKII 387 + +G + + L R IA++ FPA+D S +R + + + + LR +I Sbjct: 343 ADTLRGILDGHIVLDRAIADQGRFPAVDILGSVSRLAPRVWSPSQKTAVRDLRGLI 398 >UniRef50_Q058C4 Flagellum-specific ATP synthase n=2 Tax=cellular organisms RepID=Q058C4_BUCCC Length = 457 Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 110/245 (44%), Gaps = 17/245 (6%) Query: 154 TEDLTARVLDLAS--PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC-VLMVLLID 210 TE L V + S +GRGQR I + GK+MLL I++ H D +++V L+ Sbjct: 158 TEILDTGVCAINSLLTVGRGQRMGIFSQAGIGKSMLLGMISR-----HTDADIIVVSLVG 212 Query: 211 ERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 ER EV + L K V+ S+ D +Q E A+ +V+++ Sbjct: 213 ERGREVKDFIDNILGKDSLKKSVVIVSSADVSPMFKIQSVEYATAVAEYFCNKGNNVLLI 272 Query: 264 LDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVE-EGGSLTIIATALID 322 +DS+TR A AY V + ++ A+ N++ + GS+T T L + Sbjct: 273 VDSLTRYAMAYREVSNSLYEIPVKRYPASIFSNIPYLIERTGNIDNKSGSITSFYTILTE 332 Query: 323 TGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWI 382 G + ++ I + K + + LS ++E +PAI+ +S +R + + Q Sbjct: 333 -GDEYNDPILDITKSVLDGHIILSNVLSESGHYPAINIEKSISRLMSSIVDHDHYQYSIY 391 Query: 383 LRKII 387 ++K+I Sbjct: 392 IKKLI 396 >UniRef50_A6AXF1 VcsN2 n=15 Tax=Gammaproteobacteria RepID=A6AXF1_VIBPA Length = 420 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 30/236 (12%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC-VLMVLLIDERPEEVTE 218 +++D IG GQR + AP AGKT + SI N+ D V++ +I ER EV E Sbjct: 135 KIIDGLFTIGEGQRLGLFAPAGAGKTTTV-----SIMANNMDADVVIFAMIGERAREVVE 189 Query: 219 MQRLVKGEV----------VASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 268 ++GE+ + ST + V+ + + A+ +E K V++ DS+T Sbjct: 190 ---FLEGEIGPEVIRKSITIVSTSEANPLEKVRSGLVAVSIARYYMEQGKKVVLYFDSLT 246 Query: 269 RLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMD 328 R ARA + G + GG+ R + N + GS+T I T LI+ D Sbjct: 247 RFARAQAML---DGTPIKGGIPIGVSLALSRLVESCGNSIQ-GSVTGIFTVLIEKEID-D 301 Query: 329 EVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILR 384 + I E K + L S IA +PAID +S +R Q ++Q+ + +R Sbjct: 302 DPIAHEVKSLIDGHLVYSTTIAATGRYPAIDVLKSKSR------LQNKVQEKYYVR 351 >UniRef50_A1T0I0 ATPase, FliI/YscN family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T0I0_PSYIN Length = 436 Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 14/220 (6%) Query: 168 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------Q 220 + +GQR +VA GK++L+ I + ++ D V++V LI ER EV E + Sbjct: 152 LAKGQRVGLVAGSGVGKSVLMGMITK---FSEAD-VVVVGLIGERNREVREFIEKNIGAE 207 Query: 221 RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA 280 L K V+A+ D+ +Q E+ A+ + +V++L+DS+TR A A V + Sbjct: 208 GLKKSVVIAAPADQSPLMRIQATELCHSVAEYYRDKGANVLLLVDSLTRYAMAQREVAIS 267 Query: 281 SGKV--LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGT 338 G++ + G + P + E G++T I T L + D V+ + K Sbjct: 268 LGELPAIKGYPPSVFSFIPPLLERSGNGHENAGTMTAIYTILSEGDEDYDPVV-DTAKAI 326 Query: 339 GNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQ 378 + + LS+++A++ FPA+D +S +R + + ++ LQ Sbjct: 327 LDGHIVLSKELAQRGQFPAVDIEKSISRCMDAVVSEPHLQ 366 >UniRef50_Q0C5J4 Flagellar protein export ATPase FliI n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C5J4_HYPNA Length = 462 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 83/309 (26%), Positives = 130/309 (42%), Gaps = 45/309 (14%) Query: 82 SPSQIRRFNLRTGDTI----SGKIRPPKEGERYFALLKVN---EVNFDKPENAR------ 128 SPS I +R GD + +I P G+ + + +N EV + P A Sbjct: 65 SPSDI----IRIGDVVHIEQEARIEP---GDHWLGQI-INYRGEVATEMPAGAGLTAKGV 116 Query: 129 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 188 ++ L P H RL G V D PI RGQR + A GK+ L Sbjct: 117 SRALRAPALPAHLRHRLGPRLATGWM------VTDTLLPICRGQRLGLFAGSGVGKSTFL 170 Query: 189 QNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL-------VKGEVVASTFDEPASRHVQ 241 ++A + + +++ LI ER EV E + K VV++T E + Sbjct: 171 GSLAGGLEADR----VVIALIGERSREVGEFVNVNLPETVRHKTVVVSATASESPGAKKR 226 Query: 242 VAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFF 301 A + A+ + V+ L DSITR A A+ V +G+ T ++A + Sbjct: 227 AAYCAMATAEHFRDQGHSVLFLFDSITRFAEAHREVALLAGE--TPALNAFPPSTVRVIA 284 Query: 302 GAARNVEEG----GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPA 357 A G G +T I + L+ GS ++E + + +G + + LSR IAE+ +PA Sbjct: 285 ELAERAGPGTGAKGDITGIFSVLV-AGSDLEEPVADMIRGILDGHIILSRNIAERGRYPA 343 Query: 358 IDYNRSGTR 366 ID +S +R Sbjct: 344 IDVLKSVSR 352 >UniRef50_C5CYE4 ATPase, FliI/YscN family n=1 Tax=Variovorax paradoxus S110 RepID=C5CYE4_VARPS Length = 460 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 13/219 (5%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI----AYNHPDCVLMVLLIDERPEE 215 R +D +G+GQR I A GK+ LL +A+ + + + ++ LI ER E Sbjct: 156 RAIDGLLTLGQGQRIGIFAGSGVGKSTLLGLLARHVKAQGGADGSGGINVIALIGERGRE 215 Query: 216 VTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 268 V E + L + VV +T D+PA ++ A + A+ + ++V++ +DSIT Sbjct: 216 VREFIEKQLGPEGLARSVVVVATSDQPALARLRAAYAALSIAEYFRDEGRNVLLTMDSIT 275 Query: 269 RLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKM 327 R A A V ++G+ T G + GGS+T + T L++ G + Sbjct: 276 RFAMARREVGLSAGEPPTARGYTPSVFAELPELCERCGMAPGGGSITALLTVLVE-GDDL 334 Query: 328 DEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 +E + + + + + LSR++A + +PAID +S +R Sbjct: 335 NEPVSDALRAILDGHIVLSRQLAHRGHYPAIDVLKSVSR 373 >UniRef50_D2BZ50 Type III secretion apparatus H+-transporting two-sector ATPase n=8 Tax=Gammaproteobacteria RepID=D2BZ50_DICD5 Length = 460 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 71/276 (25%), Positives = 125/276 (45%), Gaps = 22/276 (7%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R +D IG GQR I A GKT LL +A+ N P ++ LI ER E+ E Sbjct: 168 RAIDGLLTIGCGQRVGIFAGAGCGKTTLLAELAR----NTPCDAIVFGLIGERGRELREF 223 Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 Q + +V ST D + + A A+ K V++++DS+TR AR Sbjct: 224 LDHELDAQLRSRTVLVCSTSDRSSMERARAAFTATAIAEAFRATGKQVLLIIDSLTRFAR 283 Query: 273 AYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVI 331 A + A G+ GG+ + R A + G++T + + LI+ S M++ + Sbjct: 284 AQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQTRQ-GAITALYSVLIEQDS-MNDPV 341 Query: 332 YEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMG 391 +E + + + LSR++AE+ +PAID S +R + E + +R+++ Sbjct: 342 ADEVRSLIDGHIVLSRRLAERNHYPAIDVLMSLSRTMSNVVDTEHTRNANAVRRLMAAYK 401 Query: 392 EIDAM----EFLINKLAMT----KTNDDFFEMMKRS 419 +++ + E+ A+T NDD ++++ Sbjct: 402 QVEMLIRLGEYQPGHDALTDAAVNANDDINRFLQQA 437 >UniRef50_P52158 Transcription termination factor rho (Fragment) n=3 Tax=Gammaproteobacteria RepID=RHO_THIFE Length = 58 Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 42/59 (71%), Gaps = 1/59 (1%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQ 59 MNLT+LK ++L + ++MGLE AR +KQ+IIF IL A+ + I+G+GVLEILQ Sbjct: 1 MNLTDLKRKTAADLAVICQDMGLEGTARQKKQEIIFNILNARAQC-DAIYGEGVLEILQ 58 >UniRef50_A0RC86 Flagellum-specific ATP synthase n=70 Tax=Bacillus cereus group RepID=A0RC86_BACAH Length = 434 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 119/262 (45%), Gaps = 14/262 (5%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 + +D IG GQ+ I A GK+ LL IA+ N + ++ L+ ER EV + Sbjct: 147 KSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAK----NAKADINVISLVGERGREVKDF 202 Query: 220 QRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 R GE VV +T DE ++ A++ A+ + +V++++DS+TR A Sbjct: 203 IRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFAD 262 Query: 273 AYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIY 332 A +V A ++ GG K+ + ++ GS+T I T L+D G ++ + Sbjct: 263 ARRSVDIAVKELPIGGKTLLMESYMKKLLERSGKTQK-GSITGIYTVLVD-GDDLNGPVP 320 Query: 333 EEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE 392 + +G + + L R++A +PAI S +R E + + Q +RKI+ E Sbjct: 321 DLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSPTHWQLANEMRKILSVYKE 380 Query: 393 IDAMEFLINKLAMTKTNDDFFE 414 + + F + + N FE Sbjct: 381 -NELYFKLGTIQENTENAYIFE 401 >UniRef50_B1TCL2 ATPase, FliI/YscN family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TCL2_9BURK Length = 443 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 21/229 (9%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R LD +G GQR + A GKT LL +A+ + + V ++ L+ ER EV E Sbjct: 151 RALDALLTLGVGQRVGLFAGSGVGKTTLLGALARDVYAD----VRVLCLVGERGREVEEC 206 Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 + +V +T D+ A+ + + A+ V++++DS+TR A Sbjct: 207 WNRTLSAASRARTTLVVATSDQSAALRARSVPAALSIAEYFRSQGAHVLLMIDSVTRYAL 266 Query: 273 AYNTVVPASG-----KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKM 327 A + A+G + T GV A AL + GA ++ GG++T + T L ++ + Sbjct: 267 ALREIGLAAGEPPTVRAYTPGVFA-ALPKIVERCGA---LKSGGAITALMTVLTES-DDI 321 Query: 328 DEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEE 376 D+ + E + + + LSR +AE+ FP I +S +R + E Sbjct: 322 DDPMAETMRSLLDGHIVLSRALAEQGQFPPIQVPKSVSRVSRYVANDAE 370 >UniRef50_UPI0001B464D8 transcription termination factor Rho n=6 Tax=Anaplasma marginale RepID=UPI0001B464D8 Length = 115 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/74 (45%), Positives = 46/74 (62%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +NL ELK EL+ E +G+ + RM KQ+IIF ++K+ G G GV+E L D Sbjct: 40 LNLCELKQKSTEELLVTAEELGVVSNGRMLKQEIIFQLMKRVISEGGIAIGGGVVETLPD 99 Query: 61 GFGFLRSADSSYLA 74 GFGFLRSA ++Y A Sbjct: 100 GFGFLRSAKANYAA 113 >UniRef50_A1WUC0 Flagellar protein export ATPase FliI n=15 Tax=Bacteria RepID=A1WUC0_HALHL Length = 449 Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 72/252 (28%), Positives = 111/252 (44%), Gaps = 27/252 (10%) Query: 137 TPLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 195 TPL A +ER + D+ R ++ +GRGQR + A GK++LL + + Sbjct: 131 TPLMAEPINPLERAPIAAPLDVGVRSINALFTVGRGQRMGLFAGSGVGKSVLLGMMTR-- 188 Query: 196 AYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIE 248 Y D V++V LI ER EV E L + VVA+ D + A Sbjct: 189 -YTTAD-VVVVGLIGERGREVREFITEILGRHGLARAVVVAAPADTSPLFRLHGAMRATS 246 Query: 249 KAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFG------ 302 A+ + +V++L+DS+TR A+A + A G+ T P FG Sbjct: 247 IAEYFRDQGYNVLLLMDSLTRYAQAQREIGLAIGEPPT------TKGYPPSVFGLLPRLV 300 Query: 303 --AARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 A + GGS+T T L++ G E I + + + L LSR +A+ V+PA+D Sbjct: 301 ERAGNGPDGGGSITAFYTVLVE-GDDQQEPIADSARAILDGHLVLSRSLADSGVYPAVDV 359 Query: 361 NRSGTRKEELLT 372 S +R +T Sbjct: 360 EASISRAMMAIT 371 >UniRef50_C6DIX7 Type III secretion apparatus H+-transporting two-sector ATPase n=13 Tax=Gammaproteobacteria RepID=C6DIX7_PECCP Length = 455 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 14/215 (6%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R +D IG+GQR I A GKT LL +A+ N P ++ LI ER E+ E Sbjct: 164 RAVDGLLTIGQGQRVGIFAGAGCGKTTLLAELAR----NTPCDAIVFGLIGERGRELREF 219 Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 + + +V ST D + + A A+ + V++++DS+TR AR Sbjct: 220 LDHELDDELRSRTVLVCSTSDRSSMERARAAFTATAIAEAYRAEGRQVLLIIDSLTRFAR 279 Query: 273 AYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVI 331 A + A G+ GG+ + R A E+ G++T + + LI+ S M++ + Sbjct: 280 AQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQTED-GAITALYSVLIEQDS-MNDPV 337 Query: 332 YEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 +E + + + L+R++AE+ +PAID S +R Sbjct: 338 ADEVRSLIDGHIVLARRLAEQGHYPAIDVLASLSR 372 >UniRef50_A1UTV1 Flagellum-specific ATP synthase n=55 Tax=Alphaproteobacteria RepID=A1UTV1_BARBK Length = 537 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 71/257 (27%), Positives = 116/257 (45%), Gaps = 16/257 (6%) Query: 140 HANSRL-RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 198 HA L R GNG + +V+D+ +P+ GQR I + GK+ LL + Q+ + Sbjct: 228 HAPPALARARVGNGLRTGV--KVIDIFTPLCFGQRIGIFSGSGVGKSTLLSMMMQA---D 282 Query: 199 HPDCVLMVLLIDERPEEVTEM------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKR 252 H D V++ L ER EV +M +L K V +T DE M A+ Sbjct: 283 HFDKVVLA-LTGERGREVRDMLDDTLQDKLDKVVAVIATSDESPMMRRLAPIMATTIAEY 341 Query: 253 LVEHKKDVIILLDSITRLARAYNTV-VPASGKVLTGGVDANALHRPKRFFGAARNVEEG- 310 +V++++DSITR A A + + A ++ G R A +G Sbjct: 342 FSSLGDNVLLVVDSITRYALAVREIAISAHEPPVSRGFPPRVFSELPRLLERAGPGRKGK 401 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEEL 370 GS+T + L+D G ++ I + +G + + L R IA + FPA+D + S +R Sbjct: 402 GSITGVYAVLVD-GDDHNDPIADAIRGILDGHIVLDRAIAAQGRFPAVDISSSISRLASH 460 Query: 371 LTTQEELQKMWILRKII 387 T E+ + L+++I Sbjct: 461 SWTGEQRILVQSLKEMI 477 >UniRef50_A2W3Z6 ATPase FliI/YscN n=1 Tax=Burkholderia cenocepacia PC184 RepID=A2W3Z6_9BURK Length = 386 Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 11/134 (8%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 RV+D +G GQR I AP GK+ LL IA+ + V ++ L+ ER EV E Sbjct: 80 RVIDGLMTLGIGQRVGIFAPSGVGKSTLLGMIARGAQAD----VNVIALVGERGREVREF 135 Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 + + VV ST D PA V+ A + A+ + K V++L+DS+TR AR Sbjct: 136 IEHSLSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFAR 195 Query: 273 AYNTVVPASGKVLT 286 A V ASG+ T Sbjct: 196 AQREVGLASGEPPT 209 >UniRef50_C0QS16 ATP synthase subunit alpha n=2 Tax=Bacteria RepID=C0QS16_PERMH Length = 495 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 19/219 (8%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 +V+D PIG+GQR LI+ P GKT + + I D + + + I +R + V ++ Sbjct: 153 KVIDCMFPIGKGQRELILGDPSTGKTSI--AVDTIINQKDKDVICIYVSIGQRKQSVLDV 210 Query: 220 QRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 +K +V++T D A+ ++ KDV+I+ D +T+ A Sbjct: 211 YTTLKKYGAMDYTVIVSATSDSYPGLQFLSPYSGTAIAEYFLDKNKDVLIVYDDLTKHAF 270 Query: 273 AYNTVV-----PASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKM 327 AY ++ P + G D +H R A +++GGS+T + G ++ Sbjct: 271 AYQSLSLLLKRPPGREAFPG--DIFYIH--SRLLERACKIKDGGSITALPVVETQAG-RI 325 Query: 328 DEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 I + +++L + PA+D RS +R Sbjct: 326 SSYIPTNVISITDGQIYLDSNLFNINQRPAVDVGRSVSR 364 >UniRef50_Q9ZJJ3 Flagellum-specific ATP synthase n=41 Tax=Epsilonproteobacteria RepID=FLII_HELPJ Length = 434 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 15/243 (6%) Query: 133 FENLTPLHANSRLRMERG-NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNI 191 +E L P+ ++RG + + +D G+GQ+ I A GK+ L+ I Sbjct: 118 YERLAPVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMI 177 Query: 192 AQSIAYNHPDCVLMVLLIDERPEEVTE-MQRLVKGE------VVASTFDEPASRHVQVAE 244 + + ++ LI ER E+ E +++ +KG+ VVA++ D P R A Sbjct: 178 TRGCLAP----IKVIALIGERGREIPEFIEKNLKGDLSSCVLVVATSDDSPLMRKYG-AF 232 Query: 245 MVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGA 303 + A+ DV+ ++DS+TR A A + A G+ T G +AL + Sbjct: 233 CAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMER 292 Query: 304 ARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRS 363 A E GS+T + L++ G + + I ++ + + + LSR++ + ++P I+ S Sbjct: 293 AGKEENKGSITAFFSVLVE-GDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNS 351 Query: 364 GTR 366 +R Sbjct: 352 ASR 354 >UniRef50_Q74MJ7 V-type ATP synthase alpha chain n=1 Tax=Nanoarchaeum equitans RepID=VATA_NANEQ Length = 570 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 104/236 (44%), Gaps = 32/236 (13%) Query: 159 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE 218 RVLD+ PI +G + P +GKT+L Q IA+ + D V+ + ER E+TE Sbjct: 204 TRVLDIMFPIAKGGSAAVPGPFGSGKTVLNQQIAK---WADSDIVIYIGC-GERGNEMTE 259 Query: 219 MQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD----V 260 + + + ++A+T + P + E I + E+ +D V Sbjct: 260 VLEEFPKLKDPKTGKPLMYRTILIANTSNMP----IAAREASIYLGATIGEYFRDQGYSV 315 Query: 261 IILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFF---GAARNVEE-GGSLTI 315 ++ DS +R A A + G++ + G A L + F+ G R + + GSLTI Sbjct: 316 VVNADSTSRWAEALREISSRLGEIPSEEGYPAYLLRKLAEFYERSGRVRTLNDLEGSLTI 375 Query: 316 IATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL 371 I G + V + G + L K+A KR +PAI+Y S T++ E + Sbjct: 376 IGAVSPPGGDFSEPVTQNTLRLVGAL-WALDSKLAYKRHYPAINYLISYTKQWEFV 430 >UniRef50_C1F987 Flagellar protein export ATPase FliI n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F987_ACIC5 Length = 450 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 20/223 (8%) Query: 145 LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL 204 +RM G G R +D +GRGQR I GK+ L+ + + N V+ Sbjct: 149 IRMPLGTG------IRAIDSMLTVGRGQRVGIFGGSGVGKSTLIGMMTR----NSDADVI 198 Query: 205 MVLLIDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHK 257 +V L+ ER EV E G VV ST D+ ++ A A+ + Sbjct: 199 VVGLVGERGREVGEFLEDSLGPEGRKRSVVVVSTSDQTPLLRMRAALAATTVAEYFADQG 258 Query: 258 KDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTII 316 K V+++LDS+TR A A V A+G+ T G + R + A E GS+T Sbjct: 259 KHVLLVLDSLTRFAMAAREVGLAAGEPPTAKGYTPSVFSRLAQLVERAGQFRE-GSITAF 317 Query: 317 ATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID 359 T L++ G + + + + + + LSR +A + +P I+ Sbjct: 318 YTVLME-GDDQQDTLVDAVRSYLDGHVVLSRTLASQGWYPPIE 359 >UniRef50_B1H0B7 ATP synthase subunit alpha n=3 Tax=Bacteria RepID=B1H0B7_UNCTG Length = 513 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 19/223 (8%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNI---AQSIAYNHPDCVLMVLLIDERPEEV 216 + +D +PIGRGQR LI+ GKT + + + + + + I ++ + Sbjct: 150 KAIDAMTPIGRGQRELIIGDRGTGKTAIAVDTIINQKKLDMGLKSVICIYCSIGQKKSNL 209 Query: 217 TEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 269 + +K E V+A+T EPAS + ++ KDV+++ D +T+ Sbjct: 210 ASITAKLKEEGAMDYTVVIAATASEPASMQYIAPLAACAIGEYFMDKGKDVLVVYDDLTK 269 Query: 270 LARAYNTVV-----PASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDT- 323 A AY + PA + G D LH + AAR ++ G T+ A +I+T Sbjct: 270 HAWAYRQISLLIKRPAGREAYPG--DIFYLHS-RLLERAARMSDKNGGGTLTALPIIETQ 326 Query: 324 GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 G+ M I + +++L + + PAI+ S +R Sbjct: 327 GNDMSAYIPTNVVSITDGQIYLEADLFNSGIRPAINVGLSVSR 369 >UniRef50_Q3J9F3 V-type ATP synthase alpha chain n=6 Tax=cellular organisms RepID=VATA_NITOC Length = 591 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 106/241 (43%), Gaps = 23/241 (9%) Query: 142 NSRLRMERGNGSTEDLTA-RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200 N R +R +G + +T R+LD P+ +G + + P AGKTM+ Q IA+ +++ Sbjct: 195 NPRPYQQREHGVSPLMTGQRILDTFFPLLKGGKAAVPGPFGAGKTMVQQQIAR---WSNA 251 Query: 201 DCVL----------MVLLIDERPEEV---TEMQRLVKGEVVASTFDEPASRHVQVAEMVI 247 D V+ +V ++D PE T + + +VA+T + P + + Sbjct: 252 DIVIYVGCGERGNELVEVLDSFPELTDPHTGRSLMERTLLVANTSNMPVVAREASLYVGV 311 Query: 248 EKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV-LTGGVDANALHRPKRFFGAARN 306 + + DV+I+ DS +R A A V G++ + G A R F+ A Sbjct: 312 TLGEYYRDQGYDVVIVADSTSRWAEALREVAGRLGQMPVEEGYPAYLASRLAAFYERAGR 371 Query: 307 VE----EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 362 V+ GS+T+I A+ G E + K LS+ +A+ R +PA+ + Sbjct: 372 VQTLGGSVGSVTLIG-AVSPPGGDFSEPVTSHTKEIVRTFWALSKDLADARHYPAVSWRE 430 Query: 363 S 363 S Sbjct: 431 S 431 >UniRef50_Q0AEI9 ATP synthase subunit alpha 2 n=5 Tax=Proteobacteria RepID=ATPA2_NITEC Length = 516 Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP--DCVLMVLLIDERPEEVT 217 + +D A P+G GQR LI+ + GKT +IA N D + + + +R + V Sbjct: 159 KAIDAAIPVGLGQRELIIGDRQTGKT----SIAIDTMLNQARSDVLCIYCAVGQRGDAVA 214 Query: 218 EMQRLVK-GE-----VVASTFDEPASRHVQVAEM-VIEKAKRLVEHKKDVIILLDSITRL 270 + R +K GE +V S DE A +A + A+ +DV+++ D +T Sbjct: 215 RVIRALKDGEMLQRCIVMSAGDEEAPGLSYIAPYAAMTMAEYFSAQGQDVLVIFDDMTHH 274 Query: 271 ARAYNTVV-----PASGKVLTGG---VDANALHRPKRFFGAARNVEEGGSLTIIATALID 322 AR+Y + P + G V A L R + FGA GGS+T + Sbjct: 275 ARSYRELSLLLRRPPGREAFPGDIFYVHARLLERAGQ-FGADIG---GGSITTLPVVETQ 330 Query: 323 TGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 G+ + I + +++LS ++ K FPA+D S +R Sbjct: 331 AGN-LSAYIPTNLISITDGQIYLSPQLVRKNQFPAVDLGLSVSR 373 >UniRef50_B7JY91 H+transporting two-sector ATPase alpha/beta subunit central region n=18 Tax=Bacteria RepID=B7JY91_CYAP8 Length = 607 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 66/249 (26%), Positives = 107/249 (42%), Gaps = 28/249 (11%) Query: 158 TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV- 216 T R++D PI RG G I P AGKT+L I++ A + +++V+ ER EV Sbjct: 236 TQRIIDTFLPIARGGTGCIPGPFGAGKTVLQSMISRFSAVD----IVIVVACGERAGEVV 291 Query: 217 ---TEMQRLVKGEVVASTFD------EPASRHVQVAEMVIEKAKRLVEHKK----DVIIL 263 TE ++ + S D +S V E I L E+ + DV+++ Sbjct: 292 ETITEFPKMKDPKTGGSLMDRTIIICNTSSMPVAAREASIYTGITLGEYYRQMGYDVLLI 351 Query: 264 LDSITRLARAYNTV------VPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIA 317 DS +R A+A +P + +D++ +R N GSLT+I Sbjct: 352 ADSTSRWAQAMRETSGRLEEIPGE-EAFPAYLDSSIKAVYERAGMIRTNDGSIGSLTMIG 410 Query: 318 TALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTT--QE 375 T + G +E + + T L LS + A KR +PA+D S +R + L ++ Sbjct: 411 T-VSPAGGNFEEPVTQSTLSTVKAFLGLSAERAYKRFYPAVDILISWSRYLQQLAPWFEK 469 Query: 376 ELQKMWILR 384 + W+ R Sbjct: 470 NVSPGWVKR 478 >UniRef50_P52612 Flagellum-specific ATP synthase n=269 Tax=Proteobacteria RepID=FLII_ECOLI Length = 457 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 14/241 (5%) Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 D R ++ +GRGQR + A GK++LL +A+ Y D V++V LI ER E Sbjct: 160 DTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMAR---YTRAD-VIVVGLIGERGRE 215 Query: 216 VTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 268 V + + G V+A+ D +Q A A+ + + V++++DS+T Sbjct: 216 VKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLT 275 Query: 269 RLARAYNTVVPASGKV-LTGGVDANALHR-PKRFFGAARNVEEGGSLTIIATALIDTGSK 326 R A A + A G+ T G + + P A + GGS+T T L + G Sbjct: 276 RYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTE-GDD 334 Query: 327 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKI 386 + I + + + + LSR++AE +PAID S +R L +++ ++ +++ Sbjct: 335 QQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYARVRTFKQL 394 Query: 387 I 387 + Sbjct: 395 L 395 >UniRef50_C6P430 H+transporting two-sector ATPase alpha/beta subunit central region n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P430_9PROT Length = 599 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 38/230 (16%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE- 218 R+LD P+ +G R + P AGKT++ Q IA+ ++ D V+ V ER E+ + Sbjct: 214 RILDTFFPLVKGGRAAVPGPFGAGKTIVQQQIAR---WSDADIVIYV-GCGERGNELVDI 269 Query: 219 ----------------MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK---- 258 M+R + +VA+T + P V E I L E+ + Sbjct: 270 LESFPKLTDPNTGRSLMERTL---LVANTSNMP----VVAREASIYVGATLAEYYRDQGY 322 Query: 259 DVIILLDSITRLARAYNTVVPASGKV-LTGGVDANALHRPKRFFGAARNVE----EGGSL 313 DV+++ DS +R A A V G++ + G A R F+ A V GS+ Sbjct: 323 DVVMVADSTSRWAEALREVAGRLGQMPVEEGYPAYLASRLAAFYERAGRVTTLSGNSGSI 382 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRS 363 T+I A+ G E + K LS+++A+ R +PA+D+ S Sbjct: 383 TLIG-AVSPPGGDFSEPVTSHTKEITKTFWALSKELADARHYPAVDWVES 431 >UniRef50_Q21Z99 ATP synthase subunit alpha 2 n=29 Tax=cellular organisms RepID=ATPA2_RHOFD Length = 534 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/261 (23%), Positives = 114/261 (43%), Gaps = 25/261 (9%) Query: 123 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA-RVLDLASPIGRGQRGLIVAPPK 181 +P + R + + P+ + M+R + T +V+D P+GRGQR LI+ + Sbjct: 119 RPLDGRGPVASSHRLPIERPASPIMDRAPVTVPLQTGLKVIDALIPVGRGQRELILGDRQ 178 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE-------VVASTFDE 234 GKT + + + + CV I +R V ++ ++ + VV + ++ Sbjct: 179 TGKTAIAIDTILNQQGQNVLCVYCA--IGQRASAVAKVVATLREKGAMDFTTVVVTEGND 236 Query: 235 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVV-----PASGKVLTGGV 289 P A+ +E +DV+I+ D +T+ ARAY + P + G Sbjct: 237 PPGLAYIAPYAATSIAEHFMEAGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPG-- 294 Query: 290 DANALHRPKRFFGAARNVEE---GGSLTIIATALIDTGSK-MDEVIYEEFKGTGNMELHL 345 D +H R A ++ + GGSLT A +I+T ++ + I + +++L Sbjct: 295 DIFYIH--SRLLERATHLRQERGGGSLT--ALPIIETQAQNISAYIPTNLISITDGQIYL 350 Query: 346 SRKIAEKRVFPAIDYNRSGTR 366 S + E V PA+D +S +R Sbjct: 351 SPSLFELGVLPAVDVGKSVSR 371 >UniRef50_Q98QX5 ATP SYNTHASE ALPHA CHAIN n=2 Tax=Mycoplasma RepID=Q98QX5_MYCPU Length = 529 Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 56/251 (22%), Positives = 104/251 (41%), Gaps = 30/251 (11%) Query: 132 LFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNI 191 +FE P+++ + G T +D PIGRGQ+ LI+ GKT + N Sbjct: 109 VFEEAKPIYSRKAVNAPLETGIT------AIDAVLPIGRGQKQLIIGDKGTGKTAIALNA 162 Query: 192 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAE 244 +A + + + + ++ EEV E+ ++K +++S+ D+ A + Sbjct: 163 I--LAQEKSNVISIYAAVGKKREEVVEIFSVLKSRKLMDKTIIISSSADDLAVTKYLLPY 220 Query: 245 MVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAA 304 + + A+ +DV++++D +T A AY + +L+G + F+ + Sbjct: 221 VSMSVAEHYQSLGRDVLVVIDDLTNHADAYREI-----SLLSGSAPGREAYPGDIFYTHS 275 Query: 305 RNVEE---------GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVF 355 R +E GGS+T I A S + I + ++ S K+ Sbjct: 276 RLLERAGKFSDEFGGGSITCIPIAQ-TLASDISGYIPTNLISITDGQIFTSTKLFNSGKR 334 Query: 356 PAIDYNRSGTR 366 PAID S +R Sbjct: 335 PAIDIGLSVSR 345 >UniRef50_C5S8P1 H+transporting two-sector ATPase alpha/beta subunit central region n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S8P1_CHRVI Length = 598 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 32/246 (13%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE- 218 RV+D P +G +G + P AGKT++ Q IA+ +++ D V+ V ER E+ + Sbjct: 220 RVIDTFFPQLKGGKGAVPGPFGAGKTVVQQQIAR---WSNADIVIYV-GCGERGNELVDV 275 Query: 219 ----------------MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 M+R + +VA+T + P + I A+ + DV++ Sbjct: 276 LETFPQLDDPYSGRKLMERTL---LVANTSNMPVVAREASVYVGITMAEYYRDMGYDVVM 332 Query: 263 LLDSITRLARAYNTVVPASGKV-LTGGVDANALHRPKRFFGAARNVEE----GGSLTIIA 317 L DS +R A A V G++ + G A R + A VE GS+T+I Sbjct: 333 LADSTSRWAEALREVSGRLGQMPVEEGYPAYLASRLAAVYERAGRVETFGAGSGSVTLIG 392 Query: 318 TALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY--NRSGTRKEELLTTQE 375 A+ G E + K LS+++A+ R +P+ID+ + SG K + Sbjct: 393 -AVSPPGGDFSEPVTSHTKDIIETFWALSKELADARHYPSIDWVTSFSGHVKTAAEWWHK 451 Query: 376 ELQKMW 381 E+ W Sbjct: 452 EIDPDW 457 >UniRef50_B0B8U3 Flagellum-specific ATP synthase n=15 Tax=Chlamydiaceae RepID=B0B8U3_CHLT2 Length = 434 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 18/162 (11%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R +D IG GQR I + P GK+ LL IA+ + ++ LI ER EV + Sbjct: 146 RAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAK----GSQQTINVIALIGERGREVRDY 201 Query: 220 ----------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 269 QR V ++AST E A+ V I A+ + V+ +DS++R Sbjct: 202 VNQHKEGLAAQRTV---IIASTAYETAASKVIAGRAAITIAEYFRDQGARVLFTMDSLSR 258 Query: 270 LARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEG 310 + V A G+ L T A+ H F A N ++G Sbjct: 259 WIESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDKG 300 >UniRef50_D1B4Z7 Flagellar protein export ATPase FliI n=6 Tax=Campylobacterales RepID=D1B4Z7_SULD5 Length = 434 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 14/207 (6%) Query: 168 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE-MQRLVKGE 226 G+GQ+ I A K+ L+ I + P + +V LI ER EV E +++ + G Sbjct: 154 CGKGQKMGIFAGSGVDKSTLMGMIVR--GSEAP--IKVVALIGERGREVPEFIEKNLGGN 209 Query: 227 ------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA 280 +VA++ D P R A + A+ +DV+ ++DS+TR A A + A Sbjct: 210 LENTVIIVATSDDSPLMRKYG-AFSAMSVAEYFKNQGRDVLFMMDSVTRFAMAQREIGLA 268 Query: 281 SGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTG 339 G+ T G + L + A E GS+T T L++ G + + I ++ + Sbjct: 269 LGEPPTSKGYPPSVLALLPQLMERAGKEEGKGSITAFFTVLVE-GDDLSDPIADQSRSIL 327 Query: 340 NMELHLSRKIAEKRVFPAIDYNRSGTR 366 + + LSR++ + ++P I+ S +R Sbjct: 328 DGHIVLSRELTDYGIYPPINIQNSASR 354 >UniRef50_B9L760 ATP synthase alpha/beta family, nucleotide-binding domain protein n=1 Tax=Nautilia profundicola AmH RepID=B9L760_NAUPA Length = 571 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 99/244 (40%), Gaps = 38/244 (15%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE- 218 RV+D PI +G I GKT+L Q +A+ Y D +++ + ER E+TE Sbjct: 201 RVIDFMFPIAKGGSASIPGGFGTGKTILQQTLAK---YCDAD-IIIYIGCGERGNEMTEV 256 Query: 219 ----------------MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 M R V ++A+T D P S + I + + +V + Sbjct: 257 LEEFPNLTDPYSGKPLMNRTV---LIANTSDMPVSAREASIYLGITIGEYFRDQGYNVAL 313 Query: 263 LLDSITRLARAYNTVVPASGKV-LTGGVDANALHRPKRFFGAARNVEEG----GSLTIIA 317 + DS +R A A + G++ + G A+ + + A VE GSL+II Sbjct: 314 MADSTSRWAEAMRELSSRMGELPMEEGYPADISSKIASVYERASIVETFASNIGSLSIIG 373 Query: 318 TALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEEL 377 A+ G E + K ++ L + +A R +PAI+Y S + EL Sbjct: 374 -AVSPAGGDFSEPVTIHTKRFTSVFWALDKSLANARFYPAINYLNS--------YSNYEL 424 Query: 378 QKMW 381 + W Sbjct: 425 NEWW 428 >UniRef50_Q4A6P2 ATP synthase alpha chain n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A6P2_MYCS5 Length = 514 Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 55/244 (22%), Positives = 101/244 (41%), Gaps = 37/244 (15%) Query: 161 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ 220 V+DL PIGRGQR LI+ K GKT L N + C+ + I ++ ++T Sbjct: 138 VVDLLIPIGRGQRQLIIGDRKTGKTFLALNTIINQKNQGVKCIYVA--IGQQHAQLTSTY 195 Query: 221 RLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARA 273 +L+K ++ + D P ++ +A V + +DV+++ D +T A Sbjct: 196 QLLKENGALDHTIIINAPADSPYEQY--LAPYVAMAHAENIAKDEDVLVIFDDLTTHANI 253 Query: 274 YNTVV-----PASGKVLTGGVDANALHRPKRFFGAARNVEEGGSL----TIIATALIDT- 323 Y + P + G + FF +R +E G +I A ++ T Sbjct: 254 YREIALLTNKPVGKEAFPGDM----------FFAHSRLLERSGRFAGKKSITALPILQTV 303 Query: 324 GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR------KEELLTTQEEL 377 + + +I + +L + I + PAID S +R ++ + T +E+ Sbjct: 304 DNDISSLIASNIISITDGQLVTNANIFQSGQLPAIDTELSVSRIGAAVQEKNMAKTSKEI 363 Query: 378 QKMW 381 K++ Sbjct: 364 GKIY 367 >UniRef50_C0QV76 V-type ATP synthase subunit A n=3 Tax=Bacteria RepID=C0QV76_BRAHW Length = 587 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 32/223 (14%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV--- 216 R +D +PI G G I P AGKT+L +A + + D ++M ER EV Sbjct: 217 RTIDTFNPITEGGTGFIPGPFGAGKTVLQHALATNA---NADLIIMTAC-GERANEVVEI 272 Query: 217 -TEMQRLV----------KGEVVASTFDEP-ASRHVQV-AEMVIEKAKRLVEHKKDVIIL 263 TE L+ + ++ +T + P A+R V M I + R + K V++L Sbjct: 273 FTEFPELIDPRTGRSLMERTTIICNTSNMPVAAREASVYVGMTIAEYYRSMGLK--VLLL 330 Query: 264 LDSITRLARAYNTVVPASGKVLTGGVDANALHRP---KRFFGAAR----NVEEGGSLTII 316 DS +R A+A + ++ G DA + P F+ A N E GS+T I Sbjct: 331 ADSTSRWAQALREMSNRLEEL--PGPDAFPIDLPAIISSFYARAGFVYLNNGETGSITFI 388 Query: 317 ATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID 359 T + G + E + E + LS+K A+ + +PA+D Sbjct: 389 GT-VSPAGGNLKEPVTESTRKAARCFYALSQKRADSKRYPAVD 430 >UniRef50_Q724W6 ATP synthase subunit alpha 1 n=17 Tax=Listeria RepID=ATPA1_LISMF Length = 498 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 92/221 (41%), Gaps = 22/221 (9%) Query: 161 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD----CVLMVL-----LIDE 211 V+D +PIGRGQR LI+ ++GKT IA N D C+ + + I E Sbjct: 147 VIDSITPIGRGQRQLILGNRQSGKT----QIAVDTIINQHDQNVHCIYVAIGLKAAYIAE 202 Query: 212 RPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLA 271 E + + VVA+ + + + A+ L + KDV+I+LD +T+ A Sbjct: 203 VIETLRNHGAMEYSTVVATAASDSLTAQYLTPYAGMAVAEALRDQGKDVLIILDDLTKHA 262 Query: 272 RAYNTVV-----PASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGS- 325 AY + P + G D+ +H N E GG +I A +I+T S Sbjct: 263 DAYRAITLLFNRPPGREAYPG--DSFYIHSSLLERAVQMNEEHGGG-SITAIPMIETLSD 319 Query: 326 KMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 + I + +L L + + PA+D S +R Sbjct: 320 DVTAYIPTNVISITDGQLFLKSDLFNRGQKPAVDVGVSVSR 360 >UniRef50_Q1K2D4 ATP synthase subunit alpha n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2D4_DESAC Length = 506 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 83/328 (25%), Positives = 134/328 (40%), Gaps = 52/328 (15%) Query: 60 DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEV 119 D G + D YL D+ S R ++ G+T+ G++ P Sbjct: 73 DEVGVVLLGDYQYLHTGDEARRSG---RVMDVPVGETLIGRVINP--------------- 114 Query: 120 NFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA-RVLDLASPIGRGQRGLIVA 178 P + + + ++ P+ + MER +T T +V+D PIGRGQR LI+ Sbjct: 115 -LGAPLDQQGPVNNQHRLPIERPAPAIMERAPVTTPLHTGIKVVDALVPIGRGQRELILG 173 Query: 179 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV----TEMQRLVKGE------VV 228 + GKT + + + + CV I +R V E++R +G +V Sbjct: 174 DRQTGKTAIAIDTILNQKGKNVRCVYCA--IGQRSAAVARVIAELER--RGAMDYTVVMV 229 Query: 229 ASTFDEPASRHVQ-VAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVV-----PASG 282 A D P ++ A I A+ + DV+I+ D +T ARAY + P Sbjct: 230 AEGNDPPGLSYIAPYAATTI--AEEFMRQGDDVLIVYDDLTHHARAYRELSLLLRRPPGR 287 Query: 283 KVLTGGVDANALHRPKRFFGAARNVEE---GGSLTIIATALIDTGSK-MDEVIYEEFKGT 338 + G D +H R A ++ GGSLT A +I+T ++ M I Sbjct: 288 EAFPG--DIFYIH--SRLLERATHLHPDHGGGSLT--ALPIIETEAQNMSAYIPTNLISI 341 Query: 339 GNMELHLSRKIAEKRVFPAIDYNRSGTR 366 + +L+LS + E PAID +S +R Sbjct: 342 TDGQLYLSPTLFELGALPAIDVGKSVSR 369 >UniRef50_A3MXY7 V-type ATP synthase alpha chain n=12 Tax=Archaea RepID=VATA_PYRCJ Length = 594 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 24/227 (10%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 RV+D PI +G + P +GKT++++ ++ + ++ VL + E + Sbjct: 218 RVIDTMFPIAKGGTAAVPGPFGSGKTVMIRTLSM---FAQSRIIIPVLCGERGNEAADAL 274 Query: 220 QRLVK-------------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDS 266 Q L+K ++ +T + P + M + + DV++L DS Sbjct: 275 QGLLKLKDPSTGRPLLERTTIIVNTSNMPVAAREASVYMGTTLGEYFRDQGYDVLVLADS 334 Query: 267 ITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNV------EEGGSLTIIATA 319 +R A A V G++ + G A R F+ A V E GSLTI A+ Sbjct: 335 TSRWAEAMREVALRIGEMPSEEGYPAYLPTRLAEFYERAGRVVLIGSGERVGSLTIAASV 394 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 G + V + G LS ++A R +PAID+ + +R Sbjct: 395 SPPGGDFTEPVTSNTLRFIGAF-WPLSPRLAYSRHYPAIDWLMAFSR 440 >UniRef50_C4ZAP4 Flagellar protein export ATPase FliI n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZAP4_EUBR3 Length = 373 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 5/128 (3%) Query: 250 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGK--VLTGGVDANALHRPKRFFGAARNV 307 A+ + +DV++++DS+TR + A + ASG+ V G + PK A R Sbjct: 178 AEYFRDKGEDVLLMMDSLTRFSMAQREIGLASGEPPVTRGYPPSVYSEMPKLLERAGR-- 235 Query: 308 EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRK 367 + GS+T + T L+D G +E I + + + + L RK+ K +PAID +S +R Sbjct: 236 ADKGSITGLYTVLVD-GDDFNEPITDTARSILDGHIMLDRKLGHKNHYPAIDVLQSISRV 294 Query: 368 EELLTTQE 375 + T+E Sbjct: 295 MSAIATKE 302 >UniRef50_A1RX21 V-type ATP synthase alpha chain n=14 Tax=cellular organisms RepID=VATA_THEPD Length = 601 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 34/245 (13%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL-IDERPEEVTE 218 R++D PI +G G I GKT+ L ++ + D ++V + ER E+ E Sbjct: 217 RIIDTFFPIAKGGAGAIPGGFGTGKTVTLHKVSM-----YSDSQIVVYIGCGERGNEIAE 271 Query: 219 MQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILL 264 M + + + ++A+T + P S M + A+ + DV ++ Sbjct: 272 MLKEFPVLVDPKSGRPIIERSIIIANTSNMPVSAREASIYMGVTIAEYYRDQGYDVTLIA 331 Query: 265 DSITRLARAYNTVVPASGKV-LTGGVDANALHRPKRFFGAARNV------EEGGSLTIIA 317 DS +R A A + G++ + G A + F+ V E GS+T++ Sbjct: 332 DSTSRWAEALREIAGRLGELPVERGYPAYLPDKIAEFYERGGRVKALGSPERSGSVTVLG 391 Query: 318 TALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEEL 377 G + V + G M L +A +R FPAI++ +S ++ ++ + Sbjct: 392 AVSPPGGDYNEPVTIHTLRFVGTM-WALDTDLAYRRHFPAINWLKSFSQYADI------I 444 Query: 378 QKMWI 382 ++ W+ Sbjct: 445 ERWWV 449 >UniRef50_Q4A6P1 ATP synthase beta chain n=10 Tax=Mycoplasma RepID=Q4A6P1_MYCS5 Length = 470 Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust. Identities = 53/244 (21%), Positives = 103/244 (42%), Gaps = 10/244 (4%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 + +D P+ G + + GKT+L++ + +++ + + ER E E+ Sbjct: 127 KAIDFFIPVLSGAKIGLFGGAGVGKTVLMKEVIFTLSKKDKKTTSIFIGAGERSREAIEL 186 Query: 220 ------QRLVKGEVV-ASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLA 271 L+K ++ S +E A + + + + A+ L + K++V++ +D+I R Sbjct: 187 YDELKFSNLMKNSIIFVSRMNELAGSRMSIVPIGVTAAEYLRDTQKENVLLFIDNIFRFL 246 Query: 272 RAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVI 331 +A N + + K + G L+ + E G++T T + D Sbjct: 247 QAGNEMSASLDKKPSLGGYQATLNTDISYVENRIFTNENGTITSFQTVFLPMDDLSDPSA 306 Query: 332 YEEFKGTGNMELHLSRKIAEKRVFPAID-YNRSGTRKEELLTTQEELQKMWILRKIIHPM 390 FK N L LSR+I K +FPAID S +E + +E + +KI+ Sbjct: 307 VAIFKHL-NGSLVLSREITAKNIFPAIDPLASSSDSVDERIIGKEHYNAIVEAKKILQRY 365 Query: 391 GEID 394 E++ Sbjct: 366 KELE 369 >UniRef50_D1J8A1 ATP synthase alpha chain n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8A1_MYCHP Length = 512 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 17/171 (9%) Query: 162 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-Q 220 +DL PIG+GQR LI+ + GKT + N + A N C+ + I ++ E +T + + Sbjct: 140 IDLLIPIGKGQRELIIGDRQTGKTHMALNAIINQAKNGTKCIYVA--IGQKRESLTNIYE 197 Query: 221 RLVKGEVVAST--FDEPASRHVQVAEMVIEKAK-RLVEHKKDVIILLDSITRLARAYNTV 277 L K + + +T D P + + Q I A + + DV+I+ D +T+ A + Sbjct: 198 TLKKYDALKNTMIIDAPQNVYEQYLAPYIGMAHAENLSYDNDVLIVFDDLTKHANIIREI 257 Query: 278 VPASGKVLTGGVDANALHRPKR-FFGAARNVEEGGSL----TIIATALIDT 323 + K + G +A P FF + +E GS TI A ++ T Sbjct: 258 ALLTNKSV--GKEA----MPSDIFFAHSSLLERAGSFVNRKTITALPILQT 302 >UniRef50_A5IY82 ATP synthase alpha chain n=23 Tax=Mycoplasmataceae RepID=A5IY82_MYCAP Length = 524 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 19/216 (8%) Query: 162 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-Q 220 +DL PIG+GQR LI+ + GKT + N + A C+ + I ++ E ++ + Sbjct: 151 IDLLIPIGKGQRELIIGDRQTGKTHIALNAIINQAAKGTKCIYVA--IGQKRESISRIYN 208 Query: 221 RLVKGEVVAST--FDEPASRHVQ--VAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT 276 L + + +T D PA+ + +A V + D +++ D +T+ A + Sbjct: 209 TLNQHNALKNTIIIDAPANSAYEQYLAPYVGMAHAENISATDDALVIFDDLTKHANIFRE 268 Query: 277 VVPASGKVLTGGVDANALHRP-KRFFGAARNVEEGGSL----TIIATALIDT-GSKMDEV 330 + S K + G +A P FF ++ +E GS TI A +I T + + Sbjct: 269 IALLSNKPV--GKEA----MPGDMFFAHSQLLERAGSYKGKKTITALPIIQTVDGDITSL 322 Query: 331 IYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 I + ++ S K+ K + PAID + S +R Sbjct: 323 IASNVISITDGQIVTSAKLFAKGILPAIDIDFSVSR 358 >UniRef50_Q2ST36 ATP synthase subunit alpha n=4 Tax=Mycoplasma mycoides group RepID=ATPA_MYCCT Length = 525 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 20/219 (9%) Query: 162 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM--------VLLIDERP 213 +D A PIG+GQR LI+ + GKT + + + + C+ + ++ + E+ Sbjct: 153 IDSAIPIGKGQRELIIGDRQTGKTAIAIDAIINQKNRNVKCIYVAIGQKDSTIVQVVEKF 212 Query: 214 EEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARA 273 ++ M V VV + +PAS I A+ +E DV+I+ D +T+ A + Sbjct: 213 KKYGAMDYTV---VVNAGASQPASLQYLSPYTGITIAEEWMESGNDVLIVYDDLTKHAVS 269 Query: 274 YNTVV-----PASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDT-GSKM 327 Y + P + G D LH + AAR E G +I A +I+T + Sbjct: 270 YREMSLLLRRPPGREAYPG--DVFYLHS-RLLERAARVNENYGGGSITALPIIETQAGDI 326 Query: 328 DEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 I + ++ LS ++ + V PA+D S +R Sbjct: 327 SAYIPTNVISITDGQIFLSSELFNQGVRPAVDIGPSVSR 365 >UniRef50_C3JMT5 Putative transcriptional regulator n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JMT5_RHOER Length = 876 Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 8/109 (7%) Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVV 228 G G GL+ AP AGKT+LL + A+ + PD L L + ER V+ + + E + Sbjct: 39 GPGPVGLLSAPAGAGKTLLLADWAREYSRASPDVALAWLTLAERDNNVSILCESL-AEAI 97 Query: 229 ASTFDEPASR-HVQ------VAEMVIEKAKRLVEHKKDVIILLDSITRL 270 A++ D R VQ V + + A+ L H++ ++LD + L Sbjct: 98 ATSVDAAGQRLPVQTGSRPPVEQWLTHFAETLETHERRTTLILDDVHTL 146 >UniRef50_C1TMJ4 Archaeal/vacuolar-type H+-ATPase subunit A n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMJ4_9BACT Length = 589 Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust. Identities = 60/251 (23%), Positives = 112/251 (44%), Gaps = 40/251 (15%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE- 218 RVLD P+ G ++ GKT+ Q+IA+ + + D V++ + ER E+TE Sbjct: 211 RVLDTLFPLALGGAAVLPGGFGTGKTVTQQSIAK---WCNAD-VIIYIGCGERGNEMTEV 266 Query: 219 ----------------MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 M R++ ++A+T + P + + I A+ + +V I Sbjct: 267 LEEFPELKDPYRDAPLMDRMI---LIANTSNMPVAAREASVYLGITMAEYYRDMGLNVAI 323 Query: 263 LLDSITRLARAYNTVVPASGKV--LTG--GVDANALHRPKRFFG-AARNV-----EEGGS 312 + DS +R A A + G++ + G G A R ++ + R+V E GS Sbjct: 324 MADSTSRWAEALREI---GGRLEEMPGEEGYPAYLGTRLAEYYERSGRSVLLGSPEREGS 380 Query: 313 LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLT 372 +T+I A+ G E + + + L + +A++R FP+I +N+S + E+ + Sbjct: 381 ITVI-NAVSPAGGDFSEPVTQASLRLSGVFWALDKALAQQRHFPSIQWNQSYSLYEQEME 439 Query: 373 --TQEELQKMW 381 +EE+ +W Sbjct: 440 RFYREEVSDLW 450 >UniRef50_A2BKX6 V-type ATP synthase alpha chain n=17 Tax=cellular organisms RepID=VATA_HYPBU Length = 601 Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 42/230 (18%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE- 218 RV+D P+ +G G I P +GKT+ LQ++A+ A V++ + ER E+TE Sbjct: 218 RVIDTMFPMAKGGTGAIPGPFGSGKTVTLQSLAKWSAAK----VVIYIGCGERGNEMTEV 273 Query: 219 ----------------MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 M+R + ++A+T + P + I A+ + DV++ Sbjct: 274 LETFPKLTDPWTGKPMMERTI---LIANTSNMPVAAREASIYTGITLAEYYRDMGYDVLL 330 Query: 263 LLDSITRLARAYNTV------VPASGKVLTGGVDANALHRPKRFFGAARNV------EEG 310 + DS +R A A + +PA G + R F+ A V E Sbjct: 331 VADSTSRWAEALREIAGRLEEMPAE-----EGYPSYLASRLAEFYARAGRVKVPGRPERL 385 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 GS+TI+ A+ G E + K + L ++A R +PAI++ Sbjct: 386 GSVTIVG-AVSPPGGDFTEPVTANTKRFIRVFWALDARLAYSRHYPAINW 434 >UniRef50_Q15SF7 ATP synthase subunit beta 1 n=26 Tax=cellular organisms RepID=ATPB1_PSEA6 Length = 537 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 20/220 (9%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 +++D+ P+ RG + + GKT+LL + ++ V + I ER E E+ Sbjct: 146 KIVDVLCPLERGGKAGLFGGAGVGKTVLLSEMIHNMVSQQ-QGVSIFCGIGERCREGEEL 204 Query: 220 QRLVKGEVVASTF-------DEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLA 271 R +K V +EP ++ + A+ + KKDV++L+D+I R Sbjct: 205 YREMKEAGVLDNMVMLFGQMNEPPGSRFRIGHAALTMAEYFRDDEKKDVLLLIDNIFRFI 264 Query: 272 RAYNTVVPASGKVLTGGVDANALHRP---KRFFGAARNVE--EGGSLTIIATALIDTGSK 326 +A + V SG L G + + ++P G + E G++T I + Sbjct: 265 QAGSEV---SG--LMGQMPSRMGYQPTLGTELAGLEERIANTEDGAVTSIQAVYVPADDF 319 Query: 327 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 D F + L LSRK A + +PA+D +S ++ Sbjct: 320 TDPAAVHTFSHL-SATLVLSRKRASEGFYPAVDPLQSSSK 358 >UniRef50_Q4HGU5 Transcription termination factor Cj1156 n=1 Tax=Campylobacter coli RM2228 RepID=Q4HGU5_CAMCO Length = 81 Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 3 LTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGF 62 + +LK + L+ + +EN R+Q++IF ILK K G I G+LEI +G+ Sbjct: 20 IEDLKLLDLENLVKIANECEIENPREFRRQELIFEILKAQTKKGGFILFTGILEISSEGY 79 Query: 63 GF 64 GF Sbjct: 80 GF 81 >UniRef50_C0QT21 V-type ATP synthase alpha chain (V-type ATPase subunitA) n=1 Tax=Persephonella marina EX-H1 RepID=C0QT21_PERMH Length = 576 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 34/225 (15%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R++D PI +G I GKT+L Q +A+ ++ D ++ + ER E+TE+ Sbjct: 203 RIIDFLFPIAKGGTASIPGGFGTGKTVLQQTLAK---WSDADLIVYIGC-GERGNEMTEV 258 Query: 220 -------------QRLVKGEV-VASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLD 265 ++L++ V +A+T D P S + I A+ + V ++ D Sbjct: 259 LNEFPQLEDPYTGKKLIERTVLIANTSDMPVSAREASIYLGITIAEYFRDMGYHVALMAD 318 Query: 266 SITRLARAYNTV------VPASGKVLTGGVDANALHRPKRFFGAARNVE----EGGSLTI 315 S +R A A + +PA G A+ + + A VE + GS+T+ Sbjct: 319 STSRWAEAIRELSARINEIPAE-----EGFPADLASKIASVYERAGYVEAFSGKKGSITV 373 Query: 316 IATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 I A+ G E + + + L +++A R +PAI+Y Sbjct: 374 IG-AVSPPGGDFSEPVTRHTRRFTTVFWALDKELASSRFYPAINY 417 >UniRef50_Q98QB7 ATP synthase subunit alpha 2 n=1 Tax=Mycoplasma pulmonis RepID=ATPA2_MYCPU Length = 513 Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust. Identities = 41/214 (19%), Positives = 90/214 (42%), Gaps = 14/214 (6%) Query: 162 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID--------ERP 213 +D+ PIG+GQR LI+ K GKT +IA S N + + ++ + +R Sbjct: 136 IDILLPIGKGQRQLILGDSKTGKT----SIALSTMINQKENDIKIIYVSIGLKSNDLKRI 191 Query: 214 EEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARA 273 + Q++ ++ + + + + + + A+ +++ +DV+I+ D +T A Sbjct: 192 YKTIVEQKIAHKTILMHASSDNSFQQFLIPYVAMAHAENIMQSGEDVLIIFDDLTNHANV 251 Query: 274 YNTVVPASGK-VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIY 332 + +GK V + + + A + G S+T + M ++ Sbjct: 252 LREIALLTGKPVGKEAFPGDLFYSHSKLLERAGKFKNGYSITCFPIVRT-INNDMTSLLA 310 Query: 333 EEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 + ++ + +I ++ + PAID S +R Sbjct: 311 SNIASITDGQIVTNSEIKDQGILPAIDIGLSVSR 344 >UniRef50_B7AW25 ATP synthase subunit alpha n=10 Tax=Bacteria RepID=B7AW25_9BACE Length = 684 Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 9/123 (7%) Query: 162 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR 221 +D PIGRGQR LI+ + GKT + + I D V + + I ++ + ++ Sbjct: 327 IDSMFPIGRGQRELIIGDRQTGKTSIAMDTI--INQKGKDVVCIYVAIGQKASTIAKLVN 384 Query: 222 LVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAY 274 +K +V++T +PA A+ + KDV+I+ D +++ A AY Sbjct: 385 TLKKNDAMDYTIIVSATASDPAPLQYIAPYSGTALAEYFMYQGKDVLIVYDDLSKHAVAY 444 Query: 275 NTV 277 + Sbjct: 445 RAI 447 >UniRef50_Q6MAJ5 V-type ATP synthase alpha chain n=39 Tax=Bacteria RepID=VATA_PARUW Length = 593 Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 30/226 (13%) Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 D R++D P+ +G P AGKT+L ++++ Y D VL V ER E Sbjct: 224 DTGERIIDTQFPLMKGGTFCTPGPFGAGKTVLQHHLSK---YAAVDIVLFV-ACGERAGE 279 Query: 216 VTEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 V E+ R + + ++ +T P + M I A+ + DV+ Sbjct: 280 VVEVLREFPHLIDPHTDEALMKRTVIICNTSSMPVAARESSIYMGITIAEYYRQMGLDVL 339 Query: 262 ILLDSITRLARAYNTVVPASGKV--LTG--GVDANALHRPKRFF--GAARNVEEG--GSL 313 +L DS +R A+A + SG++ + G A R F+ ++ G GS+ Sbjct: 340 VLADSTSRWAQALREM---SGRLEEIPGEEAFPAYLSSRIAEFYERSGVVSLRHGKPGSI 396 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID 359 T I A+ G +E + + L LSR ++ R +PAID Sbjct: 397 T-IGGAVSPAGGNFEEPVTQATLSVVGAFLGLSRARSDSRRYPAID 441 >UniRef50_Q2SNG7 ATP synthase subunit alpha 1 n=10 Tax=Bacteria RepID=ATPA1_HAHCH Length = 494 Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 24/223 (10%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R++D PIGRGQR LI+ G+T + N C+ VL+ +R V M Sbjct: 155 RMIDAMIPIGRGQRQLIIGDEGLGRTSIALNAVLHQKDKDVRCI-YVLIGQKRGAAVNVM 213 Query: 220 QRLVKGE-------VVASTFDEPASRHVQ-VAEMVIEKAKRLVEHKKDVIILLDSITRLA 271 Q L + VVA P +++ A + A + + V+++ D ++ A Sbjct: 214 QTLQRHGADAYTTLVVADAGSPPGLQYLAPFAGSAL--ASHWMRQGRHVLMVYDDLSSHA 271 Query: 272 RAYNTVV-----PASGKVLTGGVDANALHRPKRFFGAARNV---EEGGSLTIIATALIDT 323 R+Y + P + G D ++H R A + + GGSLT + A Sbjct: 272 RSYRELSLLLRRPPGREAYPG--DVFSVH--ARLLEQATCLSPEQGGGSLTALPIAETQQ 327 Query: 324 GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 G ++ I + +++L R + V PAID RS +R Sbjct: 328 G-EIAAYIPTNLISITDGQIYLERSLFAAGVRPAIDVGRSVSR 369 >UniRef50_A7HDG9 V-type ATP synthase alpha chain n=2 Tax=Deltaproteobacteria RepID=VATA_ANADF Length = 578 Score = 42.0 bits (97), Expect = 0.038, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 111/266 (41%), Gaps = 43/266 (16%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE- 218 RVLD P+ G ++ GKT+L Q++A+ A + V++ + ER E+ E Sbjct: 208 RVLDCFFPVSAGGTAMVPGGFGTGKTVLEQSLAKHAAAD----VVVYVGCGERGNEMAEV 263 Query: 219 MQRLVKGE-------------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD----VI 261 + L K E +V +T + P V E I + E+ +D V Sbjct: 264 LDELPKLEDPRSGGPLLGRTVLVVNTSNMP----VAAREASIYTGCTIAEYFRDMGRSVA 319 Query: 262 ILLDSITRLARAYNTVVPASGKVLTG--GVDANALHRPKRFFGAARNVEE----GGSLTI 315 +++DS +R A A + A + + G G R RF+ A VE G++TI Sbjct: 320 LMIDSTSRWAEALRE-ISARLEEMPGEEGYPTYLASRLARFYERAGRVETLGCGEGAVTI 378 Query: 316 IATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQE 375 + G + V + TG + LS +A +R +PA+D+ S + + Sbjct: 379 VGAVSPPGGDLSEPVTQCSLRATGAL-WALSADLAHRRHYPAVDWAIS-------FSLEA 430 Query: 376 ELQKMWILRKIIHPMGEI--DAMEFL 399 E + W R+ G + +AM+ L Sbjct: 431 ERLRGWFEREAGEGFGALRDEAMKLL 456 >UniRef50_Q8FXF0 Flagellum-specific ATP synthase FliI n=3 Tax=Brucella RepID=Q8FXF0_BRUSU Length = 422 Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 18/198 (9%) Query: 134 ENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 193 E+L P A R R++RG + + V+D+ +P+ GQR I A GK+ LL + + Sbjct: 135 ESLAP-AALRRARVDRGLRTGVN----VIDIFTPLCFGQRIGIFAGSGVGKSTLLAMMTR 189 Query: 194 SIAYNHPDCVLMVLLIDERPEEVTEM------QRLVKGEVVASTFDEPASRHVQVAEMVI 247 + ++ +++ L ER EV EM L K V +T DE Sbjct: 190 AADFD----TVVLALTGERGREVREMLEETMAGHLGKTITVVATGDESPMMRRLAPNTAT 245 Query: 248 EKAKRLVEHKKDVIILLDSITRLARAYNTV-VPASGKVLTGGVDANALHRPKRFF--GAA 304 A+ + ++V++++DS+TR A A V + A + G + + R Sbjct: 246 AIAEYFRDLGQNVLLIVDSVTRFAHAAREVAIAAEEPPVARGYPPSVFSQLPRLLERAGP 305 Query: 305 RNVEEGGSLTIIATALID 322 + E GGS+ I + L+D Sbjct: 306 GSAEAGGSIAGIYSVLVD 323 >UniRef50_D1J8A0 ATP synthase beta chain n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8A0_MYCHP Length = 452 Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust. Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 33/252 (13%) Query: 127 ARNKILFENLTPLHANSRLRMER---GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAG 183 +NKI + + NS + ER N + + +D PI +G + + G Sbjct: 95 TKNKIEY-----VEMNSTINNERYLENNKEIIETGIKAIDFFMPIVKGAKIGLFGGAGVG 149 Query: 184 KTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM------QRLVKGEVV-ASTFDEPA 236 KT+L++ I ++ H + + ER E E+ L+K ++ S +E Sbjct: 150 KTVLMKEIIFNLNKQHEANSNIFIGSGERSREGIELYNELSSSNLMKDSIMFISKMNEAP 209 Query: 237 SRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYNTVVPASGKVLTGG-----VD 290 + + I A+ L + ++V++ +D+I R +A N V A GK + G ++ Sbjct: 210 GARTSIVPIGITAAEYLRDTCNENVLLFIDNIYRFIQAENEVSSALGKKPSIGGYQSTLE 269 Query: 291 ANALHRPKRFFGAARNVEEGGSLTIIATALI---DTGSKMDEVIYEEFKGTGNMELHLSR 347 ++ R F RN + GS+T T + D ++ G L LSR Sbjct: 270 SDVTEVESRLF---RN--KKGSITSFQTIFLPMDDLSDPSAVAVFNHLDGN----LVLSR 320 Query: 348 KIAEKRVFPAID 359 A K +FPA D Sbjct: 321 SQAAKNIFPAFD 332 >UniRef50_C4N426 ATP synthase F1 alpha subunit n=1 Tax=uncultured bacterium pSY1435 RepID=C4N426_9BACT Length = 507 Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 23/220 (10%) Query: 162 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR 221 LD PIGRGQR L++ GKT L + +A P + + + I R E Sbjct: 152 LDTMIPIGRGQRQLLLGDRSTGKTELGIEL---LAALDPTTIGVYVAIGRRGSETASTLA 208 Query: 222 -------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAY 274 L G V S D+P A+ LVE DV+++ D +T A A+ Sbjct: 209 QLRARGVLEHGFAVVSDADDPVGLVHLTPYAASAMAESLVEAGHDVVVVYDDLTNHAHAH 268 Query: 275 NTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSL-------TIIATALIDT-GSK 326 ++ +L V A H F+ AR +E+G L ++ A +I+T Sbjct: 269 RSL----ALLLDRPVGREA-HPVDVFYAHARLLEQGAQLCARRGGGSLTAIPIIETQAGD 323 Query: 327 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 + I + ++ L +A PAID + S +R Sbjct: 324 LAGYIPTNLVSITDGQIRLDAALAAAGQHPAIDVSLSVSR 363 >UniRef50_C4DDR2 Archaeal/vacuolar-type H+-ATPase subunit A n=2 Tax=Actinomycetales RepID=C4DDR2_9ACTO Length = 578 Score = 40.8 bits (94), Expect = 0.086, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 103/256 (40%), Gaps = 44/256 (17%) Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 RVLDL P+ RG + GKT+LLQ +A+ + V++ + ER E+ E+ Sbjct: 210 RVLDLLFPVPRGGSAAVPGGFGTGKTVLLQQVAKWCDAD----VIVYIGCGERGNEMAEV 265 Query: 220 -------------QRLV-KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD----VI 261 RL + V+A+T + P + E I + E+ +D V+ Sbjct: 266 VAELLSLTDPRSGGRLADRTVVIANTSNMP----MMAREASIHTGMTVAEYFRDMGLHVV 321 Query: 262 ILLDSITRLARAY------NTVVPASGKVLTGGVDANALHRPKRFFGAARNVE----EGG 311 ++ DS +R A A N +PA G A A F+ A VE G Sbjct: 322 LIADSTSRWAEALREFASRNRELPAEEGYPAGLASALAA-----FYERAGVVETLGGRIG 376 Query: 312 SLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL 371 S+T++ A+ G + E + + L R +A R +P++ ++ S R E + Sbjct: 377 SVTVVG-AVSPPGGDLTEPVTAYTERFVRCRWTLDRDLAYARHYPSVSWSGSFCRDAETI 435 Query: 372 TTQEELQ--KMWILRK 385 + W R+ Sbjct: 436 GAWHAAHGDRAWWARR 451 >UniRef50_Q9C5A9 ATP synthase subunit beta-3, mitochondrial n=930 Tax=cellular organisms RepID=ATPBO_ARATH Length = 559 Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust. Identities = 63/288 (21%), Positives = 117/288 (40%), Gaps = 36/288 (12%) Query: 123 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA-RVLDLASPIGRGQRGLIVAPPK 181 +P + R +I E+ P+H ++ ++ G T +V+DL +P RG + + Sbjct: 178 EPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAG 237 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE---------------VTEMQRLVKGE 226 GKT+L+ + ++A H + + ER E + E Q K Sbjct: 238 VGKTVLIMELINNVAKAHGGFSVFA-GVGERTREGNDLYREMIESGVIKLGEKQSESKCA 296 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHK-KDVIILLDSITRLARAYNTVVPASGKVL 285 +V +EP +V + A+ + + +DV++ +D+I R +A + V L Sbjct: 297 LVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEV-----SAL 351 Query: 286 TGGVDANALHRP--KRFFGAAR---NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGN 340 G + + ++P GA + + GS+T + + D F Sbjct: 352 LGRIPSAVGYQPTLASDLGALQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDA 411 Query: 341 MELHLSRKIAEKRVFPAIDYNRSGTR-------KEELLTTQEELQKMW 381 + LSR+I+E ++PA+D S +R EE T +QK+ Sbjct: 412 TTV-LSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVL 458 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q1RIJ6 Transcription termination factor n=863 Tax=cellu... 569 e-161 UniRef50_B2IAB8 Transcription termination factor Rho n=6 Tax=Bac... 564 e-159 UniRef50_P52156 Transcription termination factor rho n=224 Tax=B... 563 e-159 UniRef50_C8PNN3 Transcription termination factor Rho n=1 Tax=Tre... 552 e-155 UniRef50_D1N6X9 Transcription termination factor Rho n=1 Tax=Vic... 549 e-155 UniRef50_D1CBT1 Transcription termination factor Rho n=9 Tax=Bac... 547 e-154 UniRef50_A6DIN5 Transcription termination factor Rho n=2 Tax=Chl... 546 e-154 UniRef50_Q9ZLS9 Transcription termination factor rho n=117 Tax=B... 545 e-153 UniRef50_C5CGH1 Transcription termination factor Rho n=1 Tax=Kos... 544 e-153 UniRef50_D2R072 Transcription termination factor Rho n=1 Tax=Pir... 533 e-150 UniRef50_O83281 Transcription termination factor rho n=27 Tax=Ba... 529 e-149 UniRef50_A9BEQ5 Transcription termination factor Rho n=3 Tax=Bac... 519 e-146 UniRef50_Q7UGV0 Probable transcription termination factor n=1 Ta... 513 e-144 UniRef50_C7PLF9 Transcription termination factor Rho n=1 Tax=Chi... 510 e-143 UniRef50_D2QLY9 Transcription termination factor Rho n=2 Tax=Fle... 504 e-141 UniRef50_D1PY04 Transcription termination factor Rho n=1 Tax=Pre... 504 e-141 UniRef50_C2D7C6 Possible transcription termination factor Rho n=... 498 e-139 UniRef50_D0MEG0 Transcription termination factor Rho n=1 Tax=Rho... 498 e-139 UniRef50_P52153 Transcription termination factor rho n=16 Tax=Ba... 491 e-137 UniRef50_D1P9V5 Transcription termination factor Rho n=1 Tax=Pre... 490 e-137 UniRef50_B1ZZF9 Transcription termination factor Rho n=1 Tax=Opi... 485 e-136 UniRef50_B5JM54 Rho termination factor, RNA-binding domain famil... 485 e-135 UniRef50_D1VSG2 Transcription termination factor Rho n=1 Tax=Pep... 482 e-134 UniRef50_C2MD13 Transcription termination factor Rho n=1 Tax=Por... 481 e-134 UniRef50_B1I6H8 Transcription termination factor Rho n=6 Tax=Bac... 481 e-134 UniRef50_C8WA24 Transcription termination factor Rho n=133 Tax=B... 481 e-134 UniRef50_Q0TNA5 Transcription termination factor Rho n=24 Tax=Ba... 475 e-132 UniRef50_Q1AVG2 Transcription termination factor Rho n=1 Tax=Rub... 475 e-132 UniRef50_C9RLJ9 Transcription termination factor Rho n=1 Tax=Fib... 474 e-132 UniRef50_C7HUP3 Transcription termination factor Rho n=1 Tax=Ana... 474 e-132 UniRef50_A9KHD0 Transcription termination factor Rho n=13 Tax=Cl... 472 e-132 UniRef50_P52157 Transcription termination factor rho n=260 Tax=c... 472 e-131 UniRef50_C9XS91 Transcription termination factor Rho n=16 Tax=Ba... 471 e-131 UniRef50_B1R2H4 Transcription termination factor Rho n=3 Tax=Clo... 468 e-130 UniRef50_B6WAG5 Putative uncharacterized protein n=1 Tax=Anaeroc... 467 e-130 UniRef50_P45835 Transcription termination factor rho n=20 Tax=Ac... 459 e-128 UniRef50_A7BDQ9 Putative uncharacterized protein n=1 Tax=Actinom... 458 e-127 UniRef50_C2CU97 Transcription termination factor Rho n=1 Tax=Gar... 451 e-125 UniRef50_C5RGE3 Transcription termination factor Rho n=1 Tax=Clo... 448 e-124 UniRef50_B8DWV6 Transcription termination factor Rho n=4 Tax=Bif... 448 e-124 UniRef50_C4GAL5 Putative uncharacterized protein n=2 Tax=Bacteri... 445 e-123 UniRef50_B2UR37 Transcription termination factor Rho n=2 Tax=Ver... 444 e-123 UniRef50_C4G1L0 Putative uncharacterized protein n=1 Tax=Abiotro... 443 e-123 UniRef50_C7M177 Transcription termination factor Rho n=1 Tax=Aci... 441 e-122 UniRef50_A5TX87 Transcription termination factor Rho n=11 Tax=Ba... 434 e-120 UniRef50_C2KVL4 Transcription termination factor Rho n=1 Tax=Ori... 424 e-117 UniRef50_D2QWP2 Transcription termination factor Rho n=3 Tax=Pla... 413 e-114 UniRef50_A6CBM4 Transcription termination factor Rho n=3 Tax=Pla... 411 e-113 UniRef50_B1ZX59 H+transporting two-sector ATPase alpha/beta subu... 409 e-113 UniRef50_C1A5H8 Transcription termination factor n=1 Tax=Gemmati... 409 e-112 UniRef50_C0ACT9 H+transporting two-sector ATPase alpha/beta subu... 403 e-111 UniRef50_Q1D9H4 Transcription termination factor Rho n=5 Tax=Myx... 400 e-110 UniRef50_B4CU50 Transcription termination factor Rho n=3 Tax=Ver... 396 e-109 UniRef50_B2UQ10 Transcription termination factor Rho n=2 Tax=Bac... 396 e-109 UniRef50_Q9FC33 Putative transcription terminator factor n=2 Tax... 388 e-106 UniRef50_C0QKE9 Rho1 n=1 Tax=Desulfobacterium autotrophicum HRM2... 381 e-104 UniRef50_Q2S040 Transcription termination factor rho n=1 Tax=Sal... 379 e-104 UniRef50_A6VWI3 H+transporting two-sector ATPase alpha/beta subu... 320 7e-86 UniRef50_Q2LRZ2 Flagellum-specific ATP synthase n=20 Tax=Bacteri... 312 1e-83 UniRef50_Q65JM5 Flagellar-specific ATP synthase n=9 Tax=Bacteria... 307 6e-82 UniRef50_C0QAK1 FliI n=9 Tax=root RepID=C0QAK1_DESAH 306 8e-82 UniRef50_Q83MV6 Transcription termination factor Rho n=2 Tax=Tro... 304 3e-81 UniRef50_O85632 EscN n=34 Tax=Enterobacteriaceae RepID=O85632_ECOLX 303 1e-80 UniRef50_A0AGH1 Complete genome n=21 Tax=Listeria RepID=A0AGH1_L... 300 6e-80 UniRef50_P80153 Probable ATP synthase hrpB6 n=230 Tax=Bacteria R... 298 2e-79 UniRef50_A7HV56 Flagellar protein export ATPase FliI n=8 Tax=Rhi... 297 4e-79 UniRef50_Q5DY25 Lateral flagellar export/assembly protein (LfiI-... 297 4e-79 UniRef50_P74857 Probable secretion system apparatus ATP synthase... 297 5e-79 UniRef50_B2V6Q6 Flagellar protein export ATPase FliI n=4 Tax=Bac... 297 5e-79 UniRef50_C0QPA7 Flagellar protein export ATPase FliI n=1 Tax=Per... 297 7e-79 UniRef50_UPI0001C31239 flagellar protein export ATPase FliI n=1 ... 296 8e-79 UniRef50_A0RC86 Flagellum-specific ATP synthase n=70 Tax=Bacillu... 296 9e-79 UniRef50_Q9ZJJ3 Flagellum-specific ATP synthase n=41 Tax=Epsilon... 296 1e-78 UniRef50_Q0EZL2 Flagellum-specific ATP synthase n=1 Tax=Mariprof... 296 1e-78 UniRef50_B8J143 ATPase FliI/YscN n=13 Tax=cellular organisms Rep... 294 4e-78 UniRef50_Q2RX15 ATPase FliI/YscN n=35 Tax=Alphaproteobacteria Re... 293 7e-78 UniRef50_B9L4D4 Flagellar protein export ATPase FliI n=13 Tax=Ba... 293 9e-78 UniRef50_A6W8K0 ATPase, FliI/YscN family n=44 Tax=Bacteria RepID... 292 1e-77 UniRef50_D1BD12 Type III secretion system ATPase, FliI/YscN n=1 ... 291 2e-77 UniRef50_Q9I4N1 Flagellum-specific ATP synthase n=174 Tax=Proteo... 290 6e-77 UniRef50_O83417 Flagellum-specific ATP synthase n=106 Tax=Bacter... 290 9e-77 UniRef50_D2LCY5 ATPase, FliI/YscN family n=1 Tax=Rhodomicrobium ... 289 2e-76 UniRef50_UPI00018529F8 transcription termination factor Rho n=2 ... 288 2e-76 UniRef50_C1A560 Flagellum-specific ATP synthase n=6 Tax=Bacteria... 288 3e-76 UniRef50_Q1D9L1 ATPase, FliI/YscN family n=2 Tax=Cystobacterinea... 287 5e-76 UniRef50_D2R528 ATPase, FliI/YscN family n=4 Tax=Planctomycetace... 287 5e-76 UniRef50_P55717 Probable ATP synthase y4yI n=30 Tax=Bacteria Rep... 287 6e-76 UniRef50_C8WBT8 ATPase, FliI/YscN family n=7 Tax=Sphingomonadale... 286 9e-76 UniRef50_C0QZ72 Flagellar biosynthesis/type III secretory pathwa... 286 9e-76 UniRef50_D1B4Z7 Flagellar protein export ATPase FliI n=6 Tax=Cam... 286 1e-75 UniRef50_P52607 Flagellum-specific ATP synthase n=21 Tax=Borreli... 285 2e-75 UniRef50_C7R0J8 ATPase, FliI/YscN family n=1 Tax=Jonesia denitri... 283 1e-74 UniRef50_C6N705 Flagellar protein export ATPase FliI n=1 Tax=Leg... 281 3e-74 UniRef50_D2TY23 Type III secretion cytoplasmic ATP synthase (Ysc... 281 3e-74 UniRef50_A3SFS3 Flagellum-specific ATP synthase n=3 Tax=Rhodobac... 281 4e-74 UniRef50_B0SE01 Endoflagellar biosynthesis/type III secretory pa... 280 5e-74 UniRef50_A1T0I0 ATPase, FliI/YscN family protein n=1 Tax=Psychro... 280 5e-74 UniRef50_UPI00016C3500 Flagellar biosynthesis/type III secretory... 279 1e-73 UniRef50_P0A1C0 Probable ATP synthase spaL n=121 Tax=Proteobacte... 277 4e-73 UniRef50_A3V245 FliI, Flagellum-specific ATPase n=4 Tax=Rhodobac... 277 6e-73 UniRef50_Q058C4 Flagellum-specific ATP synthase n=2 Tax=cellular... 276 1e-72 UniRef50_C1F987 Flagellar protein export ATPase FliI n=1 Tax=Aci... 275 1e-72 UniRef50_Q6AGA5 Flagellum-like ATP synthase n=1 Tax=Leifsonia xy... 275 3e-72 UniRef50_C5CYE4 ATPase, FliI/YscN family n=1 Tax=Variovorax para... 274 5e-72 UniRef50_O34171 Flagellum-specific ATP synthase n=19 Tax=Alphapr... 274 6e-72 UniRef50_A1WUC0 Flagellar protein export ATPase FliI n=15 Tax=Ba... 273 9e-72 UniRef50_D2BZ50 Type III secretion apparatus H+-transporting two... 271 3e-71 UniRef50_O67531 Flagellum-specific ATP synthase n=3 Tax=Aquifica... 269 1e-70 UniRef50_B3Q296 Type III secretion system ATP synthase protein n... 269 1e-70 UniRef50_A6GN32 Type III secretion protein n=1 Tax=Limnobacter s... 268 3e-70 UniRef50_C3KNB0 Type III secretion component, RhcN, ATP synthase... 268 4e-70 UniRef50_Q1GNY4 ATPase FliI/YscN n=3 Tax=Bacteria RepID=Q1GNY4_S... 267 4e-70 UniRef50_P52612 Flagellum-specific ATP synthase n=269 Tax=Proteo... 267 6e-70 UniRef50_Q141X8 ATPase FliI/YscN n=11 Tax=Proteobacteria RepID=Q... 264 4e-69 UniRef50_Q2NVI5 Type III secretion apparatus SpaL/InvC n=11 Tax=... 263 9e-69 UniRef50_C6DIX7 Type III secretion apparatus H+-transporting two... 260 6e-68 UniRef50_Q52371 Type III secretion ATP synthase hrcN n=14 Tax=Ps... 260 8e-68 UniRef50_A1UTV1 Flagellum-specific ATP synthase n=55 Tax=Alphapr... 259 1e-67 UniRef50_B8H363 Flagellum-specific ATP synthase n=5 Tax=Alphapro... 259 2e-67 UniRef50_Q12T73 ATPase FliI/YscN n=1 Tax=Shewanella denitrifican... 256 1e-66 UniRef50_A8LMQ4 Flagellum-specific ATP synthase n=32 Tax=Rhodoba... 252 1e-65 UniRef50_B1TCL2 ATPase, FliI/YscN family n=1 Tax=Burkholderia am... 250 8e-65 UniRef50_Q0C5J4 Flagellar protein export ATPase FliI n=1 Tax=Hyp... 249 1e-64 UniRef50_D2UDN1 Probable xanthomonas secretion apparatus protein... 245 2e-63 UniRef50_Q1K2D4 ATP synthase subunit alpha n=1 Tax=Desulfuromona... 226 1e-57 UniRef50_A6AXF1 VcsN2 n=15 Tax=Gammaproteobacteria RepID=A6AXF1_... 222 3e-56 UniRef50_B9TD12 Transcription termination factor rho, putative (... 215 2e-54 UniRef50_C6P430 H+transporting two-sector ATPase alpha/beta subu... 213 7e-54 UniRef50_C0QS16 ATP synthase subunit alpha n=2 Tax=Bacteria RepI... 212 2e-53 UniRef50_C5S8P1 H+transporting two-sector ATPase alpha/beta subu... 212 2e-53 UniRef50_B1H0B7 ATP synthase subunit alpha n=3 Tax=Bacteria RepI... 211 5e-53 UniRef50_Q21Z99 ATP synthase subunit alpha 2 n=29 Tax=cellular o... 209 2e-52 UniRef50_B9L760 ATP synthase alpha/beta family, nucleotide-bindi... 206 1e-51 UniRef50_Q3J9F3 V-type ATP synthase alpha chain n=6 Tax=cellular... 205 3e-51 UniRef50_Q74MJ7 V-type ATP synthase alpha chain n=1 Tax=Nanoarch... 201 5e-50 UniRef50_Q98QX5 ATP SYNTHASE ALPHA CHAIN n=2 Tax=Mycoplasma RepI... 199 2e-49 UniRef50_B7JY91 H+transporting two-sector ATPase alpha/beta subu... 197 6e-49 UniRef50_B0B8U3 Flagellum-specific ATP synthase n=15 Tax=Chlamyd... 197 1e-48 UniRef50_Q0AEI9 ATP synthase subunit alpha 2 n=5 Tax=Proteobacte... 193 1e-47 UniRef50_UPI0001B43522 transcription termination factor Rho n=1 ... 191 5e-47 UniRef50_Q724W6 ATP synthase subunit alpha 1 n=17 Tax=Listeria R... 188 3e-46 UniRef50_C0QV76 V-type ATP synthase subunit A n=3 Tax=Bacteria R... 185 2e-45 UniRef50_UPI0001C31DE0 transcription termination factor Rho n=1 ... 185 4e-45 UniRef50_A2W3Z6 ATPase FliI/YscN n=1 Tax=Burkholderia cenocepaci... 176 1e-42 UniRef50_A9U7E2 Predicted protein (Fragment) n=3 Tax=cellular or... 166 1e-39 UniRef50_Q4A6P2 ATP synthase alpha chain n=2 Tax=Mycoplasma syno... 164 6e-39 UniRef50_B0FLD3 Transcription termination factor Rho (Fragment) ... 147 8e-34 UniRef50_Q93EE2 Probable transcription termination factor (Fragm... 126 1e-27 UniRef50_UPI00017437AB transcription termination factor Rho n=1 ... 124 4e-27 Sequences not found previously or not previously below threshold: UniRef50_A2BKX6 V-type ATP synthase alpha chain n=17 Tax=cellula... 202 2e-50 UniRef50_Q05FY3 ATP synthase subunit alpha n=33 Tax=Gammaproteob... 201 5e-50 UniRef50_B2A3G4 ATP synthase subunit alpha n=4 Tax=Bacteria RepI... 201 5e-50 UniRef50_A3MXY7 V-type ATP synthase alpha chain n=12 Tax=Archaea... 200 8e-50 UniRef50_Q8FXF0 Flagellum-specific ATP synthase FliI n=3 Tax=Bru... 200 1e-49 UniRef50_A3CK48 V-type ATP synthase alpha chain n=144 Tax=cellul... 198 2e-49 UniRef50_A3DHP0 V-type ATP synthase alpha chain n=14 Tax=cellula... 198 3e-49 UniRef50_C0QT21 V-type ATP synthase alpha chain (V-type ATPase s... 197 7e-49 UniRef50_Q184E7 V-type ATP synthase alpha chain n=74 Tax=cellula... 197 7e-49 UniRef50_Q2ST36 ATP synthase subunit alpha n=4 Tax=Mycoplasma my... 196 2e-48 UniRef50_C9KMG4 ATP synthase subunit alpha n=1 Tax=Mitsuokella m... 195 3e-48 UniRef50_B7AW25 ATP synthase subunit alpha n=10 Tax=Bacteria Rep... 195 3e-48 UniRef50_A1RX21 V-type ATP synthase alpha chain n=14 Tax=cellula... 195 3e-48 UniRef50_C4ZAP4 Flagellar protein export ATPase FliI n=1 Tax=Eub... 194 5e-48 UniRef50_O83541 V-type ATP synthase alpha chain 2 n=6 Tax=Bacter... 193 1e-47 UniRef50_D1PIS0 ATP synthase subunit alpha n=1 Tax=Subdoligranul... 192 2e-47 UniRef50_B1AIC1 ATP synthase subunit alpha n=43 Tax=Bacteria Rep... 192 3e-47 UniRef50_B5YBQ0 ATP synthase subunit alpha n=2 Tax=Dictyoglomus ... 192 3e-47 UniRef50_P35381 ATP synthase subunit alpha, mitochondrial n=46 T... 191 4e-47 UniRef50_P38606 V-type proton ATPase catalytic subunit A n=397 T... 191 4e-47 UniRef50_C4DDR2 Archaeal/vacuolar-type H+-ATPase subunit A n=2 T... 191 6e-47 UniRef50_A5GCR1 H+-transporting two-sector ATPase, alpha/beta su... 189 2e-46 UniRef50_Q1AVH7 ATP synthase subunit alpha n=71 Tax=cellular org... 189 2e-46 UniRef50_B5Y829 ATP synthase subunit alpha n=1 Tax=Coprothermoba... 188 4e-46 UniRef50_P25705 ATP synthase subunit alpha, mitochondrial n=1593... 186 1e-45 UniRef50_A6LA83 V-type ATPase, subunit A n=41 Tax=Bacteria RepID... 185 3e-45 UniRef50_A9R780 Flagellum-specific ATP synthase n=1 Tax=Yersinia... 185 4e-45 UniRef50_Q4S553 Chromosome 6 SCAF14737, whole genome shotgun seq... 182 2e-44 UniRef50_Q6MAJ5 V-type ATP synthase alpha chain n=39 Tax=Bacteri... 180 6e-44 UniRef50_Q4JUJ8 ATP synthase subunit alpha n=54 Tax=Actinobacter... 180 7e-44 UniRef50_C1TMJ4 Archaeal/vacuolar-type H+-ATPase subunit A n=1 T... 180 1e-43 UniRef50_C8W8D3 ATP synthase subunit alpha n=2 Tax=Atopobium Rep... 179 2e-43 UniRef50_Q9GS23 ATP synthase subunit alpha n=10 Tax=Trypanosomat... 179 2e-43 UniRef50_A3NN58 ATP synthase subunit alpha 2 n=51 Tax=Proteobact... 179 2e-43 UniRef50_D1RAU6 Putative uncharacterized protein n=1 Tax=Parachl... 177 5e-43 UniRef50_B8ZR40 ATP synthase subunit alpha n=56 Tax=Bacteria Rep... 177 7e-43 UniRef50_Q3A946 ATP synthase subunit beta n=5 Tax=Bacteria RepID... 176 1e-42 UniRef50_Q2S432 ATP synthase subunit alpha n=4 Tax=Bacteria RepI... 175 2e-42 UniRef50_Q2SNG7 ATP synthase subunit alpha 1 n=10 Tax=Bacteria R... 175 3e-42 UniRef50_A6QSP8 Vacuolar ATP synthase catalytic subunit A n=1 Ta... 173 7e-42 UniRef50_A3FPS2 ATP synthase subunit alpha n=2 Tax=Cryptosporidi... 173 1e-41 UniRef50_A7HDG9 V-type ATP synthase alpha chain n=2 Tax=Deltapro... 172 2e-41 UniRef50_A1SHI9 ATP synthase subunit alpha n=2145 Tax=cellular o... 171 3e-41 UniRef50_Q98QB7 ATP synthase subunit alpha 2 n=1 Tax=Mycoplasma ... 171 3e-41 UniRef50_C1H944 Vacuolar ATP synthase catalytic subunit A n=1 Ta... 171 4e-41 UniRef50_Q2RV20 ATP synthase subunit alpha n=257 Tax=cellular or... 171 6e-41 UniRef50_A8BYU1 Vacuolar ATP synthase catalytic subunit A n=3 Ta... 169 2e-40 UniRef50_Q9G8S6 ATP synthase F1 subunit alpha n=1 Tax=Naegleria ... 166 1e-39 UniRef50_P06576 ATP synthase subunit beta, mitochondrial n=4569 ... 166 2e-39 UniRef50_Q8T4C4 ATP synthase subunit beta n=8 Tax=cellular organ... 166 2e-39 UniRef50_Q9C5A9 ATP synthase subunit beta-3, mitochondrial n=930... 165 4e-39 UniRef50_Q98QB6 ATP synthase subunit beta 2 n=22 Tax=Mycoplasmat... 164 5e-39 UniRef50_A3MAR7 ATP synthase subunit beta 2 n=63 Tax=Bacteria Re... 163 1e-38 UniRef50_A5KSP4 Sodium-transporting two-sector ATPase n=1 Tax=ca... 163 1e-38 UniRef50_Q05825 ATP synthase subunit beta, mitochondrial n=3356 ... 162 3e-38 UniRef50_Q15SF7 ATP synthase subunit beta 1 n=26 Tax=cellular or... 161 6e-38 UniRef50_O57728 Endonuclease PI-Pho2 n=1 Tax=Pyrococcus horikosh... 160 9e-38 UniRef50_Q97CQ0 Tvo atpA intein n=3 Tax=Archaea RepID=VATA_THEVO 160 1e-37 UniRef50_Q9UXU7 Pab atpA intein n=9 Tax=cellular organisms RepID... 158 4e-37 UniRef50_Q9TAH9 ATP synthase subunit alpha n=1 Tax=Cafeteria roe... 158 4e-37 UniRef50_P46561 ATP synthase subunit beta, mitochondrial n=70 Ta... 158 4e-37 UniRef50_Q2VZN2 ATP synthase subunit beta n=40 Tax=cellular orga... 158 5e-37 UniRef50_Q4A6P1 ATP synthase beta chain n=10 Tax=Mycoplasma RepI... 158 5e-37 UniRef50_Q6L1S7 A1AO H+ ATPase subunit A n=1 Tax=Picrophilus tor... 156 9e-37 UniRef50_Q9BBC2 ATPase CF1 alpha subunit (Fragment) n=3 Tax=Dino... 156 1e-36 UniRef50_D1J8A0 ATP synthase beta chain n=1 Tax=Mycoplasma homin... 156 1e-36 UniRef50_Q874G5 Vacuolar membrane ATPase subunit a (Fragment) n=... 156 1e-36 UniRef50_A5IY82 ATP synthase alpha chain n=23 Tax=Mycoplasmatace... 156 2e-36 UniRef50_Q0QEM9 ATP synthase subunit beta (Fragment) n=28 Tax=ce... 156 2e-36 UniRef50_D2V5T0 Mitochondrial F-1-ATPase subunit n=1 Tax=Naegler... 155 4e-36 UniRef50_C4N426 ATP synthase F1 alpha subunit n=1 Tax=uncultured... 153 8e-36 UniRef50_A5EBX1 ATP synthase subunit beta 2 n=3 Tax=cellular org... 153 1e-35 UniRef50_P17255 Endonuclease PI-SceI n=18 Tax=cellular organisms... 151 6e-35 UniRef50_A3LP04 Vacuolar H+-ATPase V1 sector, subunit A n=8 Tax=... 150 1e-34 UniRef50_A1ZPD5 ATP synthase F1, beta subunit n=2 Tax=Bacteroide... 149 2e-34 UniRef50_Q9MTQ2 ATP synthase subunit beta n=2 Tax=Amphidinium Re... 148 3e-34 UniRef50_C5DTL5 ZYRO0C09504p n=2 Tax=Saccharomycetaceae RepID=C5... 148 3e-34 UniRef50_Q600H8 ATP synthase alpha chain n=4 Tax=Mycoplasma RepI... 145 3e-33 UniRef50_C6G421 ATP synthase subunit alpha n=2 Tax=Heterocapsa t... 145 3e-33 UniRef50_C6HLF6 ATP synthase subunit alpha n=1 Tax=Ajellomyces c... 144 6e-33 UniRef50_Q6KHZ3 ATP synthase alpha chain n=1 Tax=Mycoplasma mobi... 143 1e-32 UniRef50_D1J8A1 ATP synthase alpha chain n=1 Tax=Mycoplasma homi... 143 2e-32 UniRef50_Q98QX4 ATP SYNTHASE BETA CHAIN n=1 Tax=Mycoplasma pulmo... 141 3e-32 UniRef50_Q74MS5 NEQ263 n=1 Tax=Nanoarchaeum equitans RepID=Q74MS... 141 5e-32 UniRef50_Q98PM2 ATP SYNTHASE ALPHA CHAIN n=1 Tax=Mycoplasma pulm... 140 8e-32 UniRef50_C1TMJ5 Archaeal/vacuolar-type H+-ATPase subunit B n=1 T... 139 2e-31 UniRef50_C3W009 ATP synthase subunit alpha n=4 Tax=Spermatophyta... 139 2e-31 UniRef50_C0QT22 V-type ATP synthase beta chain (V-type ATPase su... 138 3e-31 UniRef50_A5DXZ0 Vacuolar ATP synthase catalytic subunit A n=6 Ta... 138 4e-31 UniRef50_Q5LD89 ATP synthase subunit beta n=30 Tax=Bacteroidetes... 138 5e-31 UniRef50_B9L759 V-type ATP synthase beta chain n=1 Tax=Nautilia ... 133 9e-30 UniRef50_Q3J9F4 V-type ATP synthase beta chain n=44 Tax=Bacteria... 132 2e-29 UniRef50_A3MU07 V-type ATP synthase beta chain n=5 Tax=Thermopro... 130 1e-28 UniRef50_A9GHR6 ATP synthase subunit alpha n=4 Tax=cellular orga... 127 8e-28 UniRef50_C4DDR1 Archaeal/vacuolar-type H+-ATPase subunit B n=1 T... 125 3e-27 UniRef50_UPI0001B4F835 V-type ATP synthase subunit B n=1 Tax=Str... 124 5e-27 UniRef50_Q71UA2 H+-ATPase beta 1 subunit (Fragment) n=14 Tax=Eum... 124 8e-27 UniRef50_P15313 V-type proton ATPase subunit B, kidney isoform n... 123 1e-26 UniRef50_B8JE34 V-type ATP synthase beta chain n=5 Tax=Deltaprot... 121 6e-26 UniRef50_O50140 ATP synthase subunit alpha n=4 Tax=cellular orga... 119 2e-25 UniRef50_A0D564 ATP synthase subunit alpha n=2 Tax=Paramecium te... 118 5e-25 >UniRef50_Q1RIJ6 Transcription termination factor n=863 Tax=cellular organisms RepID=RHO_RICBR Length = 449 Score = 569 bits (1468), Expect = e-161, Method: Composition-based stats. Identities = 283/417 (67%), Positives = 350/417 (83%), Gaps = 1/417 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +NL ELK EL E + +EN++ +RKQ+++FAILK+ + G I G+GVLE+L D Sbjct: 28 INLKELKRKLPEELQAQAEELKIENVSSLRKQELVFAILKKSVEQGGSIVGEGVLEVLPD 87 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRS + +YLAGPDDIY+SPSQIRRF LRTGDT+ G+IR PKEGERYFALLKVN+VN Sbjct: 88 GFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGRIRAPKEGERYFALLKVNKVN 147 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 F+ P A +++ F+NLTPL+ + +L +E + S +D + RV++L +P+G+GQR LIVAPP Sbjct: 148 FEDPSKAYHRVNFDNLTPLYPDEKLGLELEDNS-KDFSTRVIELVAPMGKGQRALIVAPP 206 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+LLQNIA +I N+P+ L+VLLIDERPEEVT+MQR V+GEVV+STFDEPASRHV Sbjct: 207 RTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPASRHV 266 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 Q+AEMVIEKAKRLVEHKKDV+IL+D+ITRLARAYNTVVP+SGKVLTGGVDANAL RPKRF Sbjct: 267 QLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF 326 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARN+E GGSLTII TALI+TGS+MDEVI+EEFKGTGN E+ L RKIA+KR++PAID Sbjct: 327 FGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEIVLDRKIADKRIYPAIDI 386 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 RSGTRKE+LL + L KMW+LR+II PMG +A+EFL+ KL TKTN++FFEMMK Sbjct: 387 TRSGTRKEDLLVDKIVLNKMWVLRRIIDPMGSSEAIEFLLKKLEHTKTNNEFFEMMK 443 >UniRef50_B2IAB8 Transcription termination factor Rho n=6 Tax=Bacteria RepID=B2IAB8_XYLF2 Length = 564 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 298/418 (71%), Positives = 360/418 (86%), Gaps = 1/418 (0%) Query: 2 NLTELKNTPVSELITLGENMGL-ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +L++LK P +L+ + E + + E +AR RKQD+IFA+LK + GE +F DGVLEIL D Sbjct: 147 SLSDLKKMPAHKLLEIAEQLNIHEGVARARKQDVIFALLKVLTRHGEGVFADGVLEILPD 206 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLR+A++SYLAGPDD Y+SPSQIRRFNLRTGD +SG+IR PK+GERYFAL V+ +N Sbjct: 207 GFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTIN 266 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 + E ++NKILFENLTPL R R+ER +GSTED+T R+LDL +P G+GQR LIV+PP Sbjct: 267 GEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRILDLMAPQGKGQRALIVSPP 326 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 KAGKTML+Q +A +I NHP+ L+VLLIDERPEEVTEMQR V+GEV++STFDEPA+RHV Sbjct: 327 KAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHV 386 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 QVAEMVIE+AKRL+EHKKDV+ILLDSITRLARAYN VVP+SGKVLTGGVDA+ALHRPKRF Sbjct: 387 QVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAHALHRPKRF 446 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGN ELHL+R+IAEKRV+PAID Sbjct: 447 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNCELHLNRRIAEKRVYPAIDI 506 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 NRSGTR+E+LL + LQK+WILRK++HPM EI A+EF+++K+ TK+ND+FF MKR Sbjct: 507 NRSGTRREDLLIESDLLQKIWILRKLLHPMDEIAAIEFVLDKMKNTKSNDEFFGSMKR 564 >UniRef50_P52156 Transcription termination factor rho n=224 Tax=Bacteria RepID=RHO_RHOS4 Length = 422 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 281/417 (67%), Positives = 354/417 (84%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +NL +LK ++L+ + E +EN MRK +++F+ILK+HA+ G ++ GDGVLE+LQD Sbjct: 5 LNLADLKAKTPADLLAMAEEWEIENAPSMRKGEMMFSILKEHAEEGYEVGGDGVLEVLQD 64 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRS +++YL GPDDIYVSP +R+F+LRTGDTI G I P+E ERYF+L +V ++N Sbjct: 65 GFGFLRSPEANYLPGPDDIYVSPEILRQFSLRTGDTIEGVIVAPRENERYFSLTRVTKIN 124 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 FD PE AR+K+ F+NLTPL+ + RL+ME + + +D +AR++DL +PIG+GQRGLIVAPP Sbjct: 125 FDDPERARHKVHFDNLTPLYPDERLKMEVDDPTMKDRSARIIDLVAPIGKGQRGLIVAPP 184 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+LLQNIA SIA NHP+C L+VLLIDERPEEVT+MQR VKGEVV+STFDEPA+RHV Sbjct: 185 RTGKTVLLQNIAHSIATNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV 244 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 VAEMVIEKAKRLVEHK+DV+ILLDSITRL RA+NTVVP+SGKVLTGGVDANAL RPKRF Sbjct: 245 AVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQRPKRF 304 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARN+EEGGSLTIIATALIDTGS+MDEVI+EEFKGTGN E+ L RK+A+KRVFPA+D Sbjct: 305 FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVFPAMDI 364 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 +SGTRKE+LL + +LQK ++LR+I++PMG DA+EFLI+KL TK+N +FF+ M Sbjct: 365 LKSGTRKEDLLVDKSDLQKTYVLRRILNPMGTTDAIEFLISKLRQTKSNAEFFDSMN 421 >UniRef50_C8PNN3 Transcription termination factor Rho n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNN3_9SPIO Length = 543 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 255/417 (61%), Positives = 336/417 (80%), Gaps = 5/417 (1%) Query: 3 LTELKNTPVSELITLGENMGL--ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 + +L + L L G+ E++ M+KQ+IIF ILK H ++G IF G LEIL D Sbjct: 125 INDLTRMGMHALRDLAAQYGIPHEDMVAMKKQEIIFFILKHHTENGGIIFASGALEILPD 184 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G+GFLRS +SYL+G DDIY+SPSQIR FNL+TGDT+ G+IR PKEGER+FALL+V VN Sbjct: 185 GYGFLRSPQNSYLSGSDDIYISPSQIRLFNLKTGDTVYGQIRSPKEGERFFALLRVESVN 244 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 F+ A+++I F+NLTPL+ +L +E ++E + R++DL PIG+GQR LIVAPP Sbjct: 245 FEDVSVAQSRIPFDNLTPLYPREKLNLET---TSELYSTRIMDLFCPIGKGQRSLIVAPP 301 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+L+Q IA +I NHP+ L+VLLIDERPEEVT+M+R V GEV++STFDE A+RHV Sbjct: 302 RTGKTILMQQIANAITQNHPEVYLIVLLIDERPEEVTDMERTVHGEVISSTFDEQATRHV 361 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 QVAEMV+EKAKRLVEHKKDV+ILLDSITRLARAYN VP SGKVL+GGVD+NALH+PKRF Sbjct: 362 QVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNQTVPTSGKVLSGGVDSNALHKPKRF 421 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARN+EEGGSLTIIATALI+TGS+MDEVI+EEFKGTGNME++L R+++++R+FPAI+ Sbjct: 422 FGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNMEINLDRRLSDRRIFPAINI 481 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 +SGTRKEELL + +LQ++W+LRK+I+PM +++ M+ L++K+ +K N+ F ++M Sbjct: 482 KKSGTRKEELLINEADLQRIWLLRKVINPMDDLEIMDLLLDKMKKSKNNEVFLKLMN 538 >UniRef50_D1N6X9 Transcription termination factor Rho n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N6X9_9BACT Length = 637 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 243/417 (58%), Positives = 317/417 (76%), Gaps = 3/417 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +N++EL+ + EL +G +G+E + + K ++ IL+ +A+ +FG G LE+L D Sbjct: 220 LNISELQEKSMQELAVMGAELGIEGIGALDKSTLVCEILRANAEKCGQMFGSGYLEVLPD 279 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRS SYL +DIY+SPSQI+RF L+TGD I+G+IR P+E ER+FA+LKV +N Sbjct: 280 GFGFLRSPSYSYLPCSEDIYLSPSQIKRFALKTGDFIAGQIRTPREKERFFAMLKVESIN 339 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 D PE + I F +L P RL +ER D + R++DL +PIG+GQRGLIVAPP Sbjct: 340 NDSPERKKEIIPFNSLVPYFPTQRLVLER---DPADYSTRIVDLVTPIGKGQRGLIVAPP 396 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+LLQ IA SI N+P+ L++LLIDERPEEVT+M R V EVV+STFDEP RHV Sbjct: 397 RTGKTVLLQKIANSIRANNPEVKLIILLIDERPEEVTDMMRSVDAEVVSSTFDEPPERHV 456 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 QVAEMVIEKAKR+VE+K+DV+ILLDSITRLARAYNT+ P SGK+LTGGVDA ALH+PKRF Sbjct: 457 QVAEMVIEKAKRMVEYKQDVVILLDSITRLARAYNTLQPHSGKILTGGVDATALHKPKRF 516 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARN+E GSLTIIATAL++TGS+MD+VI+EEFKGTGNMELHL R ++++R++PAI+ Sbjct: 517 FGAARNIENHGSLTIIATALVETGSRMDDVIFEEFKGTGNMELHLDRNVSDRRIYPAINV 576 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 +SGTRKEELL +EL K+WILRK I+ + +AME L+ +L KTN +F ++ Sbjct: 577 EKSGTRKEELLLHPDELNKVWILRKAINGVPPAEAMELLLGRLKKVKTNIEFLLTLQ 633 >UniRef50_D1CBT1 Transcription termination factor Rho n=9 Tax=Bacteria RepID=D1CBT1_THET1 Length = 642 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 233/416 (56%), Positives = 313/416 (75%), Gaps = 5/416 (1%) Query: 3 LTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGF 62 EL++ + L+ LG ++ +E M K+ +I+ IL+ A + G+L+I++DGF Sbjct: 230 FAELQSMTKTNLLALGRSLEVEVSGSMTKETLIYKILEAQANRAGYLLKQGILDIIEDGF 289 Query: 63 GFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFD 122 GFLR YL PDD+YVS SQIRRF LRTGD + G++R PK+ E+Y +LL+V VN+ Sbjct: 290 GFLRQER--YLPSPDDVYVSQSQIRRFGLRTGDHVIGQVRAPKDNEKYHSLLRVEAVNYM 347 Query: 123 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKA 182 PE AR + F+ LTP+ N +L +E + + L+ R++DL +PIGRGQRGLIV+PPKA Sbjct: 348 DPEAARKRPFFDQLTPIFPNRQLVLET---TPKQLSTRLIDLVAPIGRGQRGLIVSPPKA 404 Query: 183 GKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQV 242 GKT LL++IA I +N+ D LM+LLI ERPEEVT+++R V+GEVVASTFDEP H +V Sbjct: 405 GKTTLLKDIANGITHNYDDVHLMMLLIGERPEEVTDIRRSVEGEVVASTFDEPVEDHTKV 464 Query: 243 AEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFG 302 AEM +E+AKRLVE KDV+IL+DSITRLARAYN VVPASG+ L+GG+D AL+ PKRFFG Sbjct: 465 AEMALERAKRLVECGKDVVILMDSITRLARAYNLVVPASGRTLSGGIDPVALYPPKRFFG 524 Query: 303 AARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 362 AARN++EGGSLTIIAT LIDTGS+MD+VIYEEFKGTGNMELHL RK+ E+R+FPAID R Sbjct: 525 AARNIDEGGSLTIIATCLIDTGSRMDDVIYEEFKGTGNMELHLDRKLQERRIFPAIDVQR 584 Query: 363 SGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 SGTR+EELL + +LQK+W +R+++ +G ++ E L+N+LA T+ N++F + + Sbjct: 585 SGTRREELLIPEPKLQKIWTMRRMVSMLGGLEGTELLLNRLAKTENNEEFLNTLNK 640 >UniRef50_A6DIN5 Transcription termination factor Rho n=2 Tax=Chlamydiae/Verrucomicrobia group RepID=A6DIN5_9BACT Length = 613 Score = 546 bits (1406), Expect = e-154, Method: Composition-based stats. Identities = 236/416 (56%), Positives = 318/416 (76%), Gaps = 3/416 (0%) Query: 2 NLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61 NL+E++ ++EL L + +E + + KQ +++ IL+ A ++G GVLE+ ++G Sbjct: 200 NLSEIQQKSMAELNELANALEVEGVGSIGKQQLVYEILQAQASDQGILYGGGVLEVFKEG 259 Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 +GFLRS++ SY+ P+DIY+SP Q+RRF+LRTGDT+ G +R ++ ER+FA++KV+ +N Sbjct: 260 YGFLRSSEYSYMPSPEDIYLSPKQVRRFSLRTGDTVMGAVRAAQDQERFFAMIKVDAING 319 Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 + P+ +NKI FE+LTP R+ ME + + RVLDL P+G GQRGLIVAPP+ Sbjct: 320 EDPKEKKNKIPFESLTPDFPEYRMHMET---EPTNHSMRVLDLVVPVGAGQRGLIVAPPR 376 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQ 241 GKT+L+Q+IA SIA N+PD L+VLLIDERPEEVT+M+R VKGEV++STFDEP +RHVQ Sbjct: 377 TGKTVLMQSIANSIATNNPDFHLIVLLIDERPEEVTDMKRNVKGEVISSTFDEPPTRHVQ 436 Query: 242 VAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFF 301 VAEMVIEKAKR+VEH K+V++LLDSITRLARAYNTV P SGK+L+GGVDANALH+PKRFF Sbjct: 437 VAEMVIEKAKRMVEHGKNVVVLLDSITRLARAYNTVQPHSGKILSGGVDANALHKPKRFF 496 Query: 302 GAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYN 361 GAAR ++EGGSLTI+ATAL+DTGSKMDEVI+EEFKGTGNME+ L R + +KR+FPAI+ Sbjct: 497 GAARRIQEGGSLTILATALVDTGSKMDEVIFEEFKGTGNMEICLDRGMIDKRIFPAINIE 556 Query: 362 RSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 +SG RKEELL +E + MW LR+ M + M+ ++N + TK+N +F M Sbjct: 557 KSGARKEELLLDPKEKELMWKLRRAAISMPTTEGMKIILNGVKKTKSNVEFLMTMN 612 >UniRef50_Q9ZLS9 Transcription termination factor rho n=117 Tax=Bacteria RepID=RHO_HELPJ Length = 438 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 225/417 (53%), Positives = 316/417 (75%), Gaps = 3/417 (0%) Query: 2 NLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61 ++ +L+ P +L+ + + +EN ++QD++F ILK G I G+LEI+ DG Sbjct: 24 HIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDG 83 Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 +GFLR D S+ G +D YVSPSQIRRF LR GD ++G++R PK+ E+Y+ALLK+ +N+ Sbjct: 84 YGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINY 143 Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 + +N+ LF+NLTPL + ++++E +T R+LDL SP+G+GQR LIVAPP+ Sbjct: 144 LPSDEIKNRPLFDNLTPLFPDEQIKLEY---EPTKVTGRMLDLFSPVGKGQRALIVAPPR 200 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQ 241 GKT L++ +AQ I NHP+ L++LL+DERPEEVT+MQR VKG+V +STFD PA+ H++ Sbjct: 201 TGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIR 260 Query: 242 VAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFF 301 +AE+V+E+AKR VE KDV++LLDSITRLARAYN V P+SGKVL+GGVDANALHRPKRFF Sbjct: 261 IAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFF 320 Query: 302 GAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYN 361 GAARN+EEGGSLTIIATALI+TGS+MDEVI+EEFKGTGN E+ L+R IA++R++PA D Sbjct: 321 GAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDIL 380 Query: 362 RSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 +SGTRK+ +L ++ L K+W+LR ++ M +I+A+ F+ +K+ TK N++F +M Sbjct: 381 KSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQTKDNEEFLNLMNE 437 >UniRef50_C5CGH1 Transcription termination factor Rho n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGH1_KOSOT Length = 468 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 220/416 (52%), Positives = 308/416 (74%), Gaps = 3/416 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +++++L P+ EL L + +M K+D+IFA+LK +S F +GVLEI Sbjct: 49 IDISQLLKMPIRELYKLARKYSITGYTQMAKKDLIFAVLKAQTESYGYFFAEGVLEITDG 108 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G+GFLR+ D++ L +DIYVS SQIRRFNL TGD ++G++R PKEGE+YFALL++ +N Sbjct: 109 GYGFLRTLDNNLLPSSNDIYVSQSQIRRFNLNTGDWVAGQVRSPKEGEKYFALLRIEAIN 168 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 A +I F+NL P++ + + +E ++ R++DL SPIG+GQRGLIVAPP Sbjct: 169 QKPVSYAEERISFQNLVPVYPDEKFILET---EPYIVSTRIIDLFSPIGKGQRGLIVAPP 225 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 KAGKT LL+ IA IA NHP+ + ++LLIDERPEEVT+++R V+A+ FD + + Sbjct: 226 KAGKTTLLKEIANGIAENHPNTIRIILLIDERPEEVTDLRRSTDAHVIAAPFDMSPDKQI 285 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 +VAE+ +E AKRLVE DV+ILLDSITRLARAYN VP SGK+L+GGVD +AL+ PK F Sbjct: 286 RVAELTLEMAKRLVEFGYDVVILLDSITRLARAYNLYVPPSGKLLSGGVDPSALYHPKHF 345 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARN+E+GGSLTII+TAL++TGSKMDEVI+EEFKGTGNMEL LSR++A KR+FPAI+ Sbjct: 346 FGAARNIEDGGSLTIISTALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINL 405 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 N SGTRKEELL E L+K+W+LR+++ + E + ++ +++K+ TK+N++F +++ Sbjct: 406 NLSGTRKEELLLPPEILRKVWVLRRMLAGISEEEGLKVIVDKMKTTKSNEEFLDLI 461 >UniRef50_D2R072 Transcription termination factor Rho n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R072_9PLAN Length = 518 Score = 533 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 239/420 (56%), Positives = 328/420 (78%), Gaps = 6/420 (1%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +++TEL+ +++LI ++ A M++QD+IF ILK+ K ++G+G LEIL D Sbjct: 100 LHITELQRMSMAQLIEEARQENVDEAAGMKRQDLIFRILKERVKISGLMYGEGTLEILPD 159 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRS D YL+ PDDIYVSPSQIRRF LRTG T+SG+IRPPKE ERYFALL+V +N Sbjct: 160 GFGFLRSPDYHYLSCPDDIYVSPSQIRRFGLRTGATVSGQIRPPKENERYFALLRVEAIN 219 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 + P +N++ F++LTPLH + R+ ME +++ RV+DL +PIG GQRGLIV+PP Sbjct: 220 YQDPNLTQNRVQFDDLTPLHPDKRITMEY---DADEIATRVIDLVTPIGFGQRGLIVSPP 276 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG---EVVASTFDEPAS 237 +AGKT+++Q +A+++ N P+ +++LL+DERPEEVT+M+R VKG EV++STFDEP + Sbjct: 277 RAGKTVIMQKMARAVLQNFPEAYVIMLLVDERPEEVTDMERQVKGPNCEVISSTFDEPPA 336 Query: 238 RHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRP 297 RHVQV++MV+EKAKRLVE DV+I LDSITRLARA+N+ P SGK+LTGG+DANAL +P Sbjct: 337 RHVQVSQMVLEKAKRLVECGVDVVIFLDSITRLARAWNSECPQSGKLLTGGLDANALQQP 396 Query: 298 KRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPA 357 KRFFG+AR VEEGGSLTI+ATALIDTGSKMD+VI+EEFKGTGN+E++L R++ +KR++PA Sbjct: 397 KRFFGSARKVEEGGSLTILATALIDTGSKMDDVIFEEFKGTGNLEIYLDRRLVDKRIWPA 456 Query: 358 IDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 ID RSGTR+EE+L EE +++ ++R+++ M DAM+ L+ ++A TKTN +F M Sbjct: 457 IDITRSGTRREEILMDPEEYRRVSVMRRLLSEMNPPDAMDLLVTRMAKTKTNAEFLMSMN 516 >UniRef50_O83281 Transcription termination factor rho n=27 Tax=Bacteria RepID=RHO_TREPA Length = 519 Score = 529 bits (1363), Expect = e-149, Method: Composition-based stats. Identities = 251/417 (60%), Positives = 331/417 (79%), Gaps = 5/417 (1%) Query: 3 LTELKNTPVSELITLGENMGL--ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 + +L + L G+ E++ M+K DIIF +LK H ++G IF G LEIL D Sbjct: 100 IDDLTEMGMHALRDFAVQRGISQEDVVVMKKSDIIFHVLKNHTENGGVIFASGSLEILPD 159 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G+GFLRS +SYL G DDIYVSPSQIR FNL+TGDTI G+IR PKEGER+FA+L+V VN Sbjct: 160 GYGFLRSPQNSYLPGSDDIYVSPSQIRLFNLKTGDTIYGQIRSPKEGERFFAMLRVETVN 219 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 F++ ++++ F++LTPL+ +L +E TED++ RV++L PIG+GQR LIVAPP Sbjct: 220 FEEVAKVQDRVPFDSLTPLYPREKLNLET---RTEDISTRVMNLFCPIGKGQRALIVAPP 276 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+L+Q IA +I NHP+ L+VLLIDERPEEVT+M+R V EV++STFDE A+RHV Sbjct: 277 RTGKTILMQKIANAITQNHPEVYLIVLLIDERPEEVTDMERTVDAEVISSTFDEQATRHV 336 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 Q+AE+V+E+AKRLVEH+KDV+ILLDSITRLARAYN +P SGKVL+GGVD+NALH+PKRF Sbjct: 337 QIAEIVLERAKRLVEHRKDVVILLDSITRLARAYNQTMPTSGKVLSGGVDSNALHKPKRF 396 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARNVEEGGSLTIIATALI+TGS+MDEVI+EEFKGTGNME++L R+++++R+FPA+ Sbjct: 397 FGAARNVEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNMEINLDRRLSDRRLFPAVSI 456 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 +SGTRKEELL T+EE+Q++W+LRK+I+PM + + +E LI+K+ TK N+ F M Sbjct: 457 KKSGTRKEELLLTEEEMQRIWVLRKVINPMDDAEIVELLIDKMRKTKNNEAFLRSMN 513 >UniRef50_A9BEQ5 Transcription termination factor Rho n=3 Tax=Bacteria RepID=A9BEQ5_PETMO Length = 441 Score = 519 bits (1338), Expect = e-146, Method: Composition-based stats. Identities = 227/417 (54%), Positives = 308/417 (73%), Gaps = 3/417 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +N+ +L EL L + + N ++M K ++ FAIL++ +S F +G+LE+L D Sbjct: 23 INMAKLNEMTRKELYELARKLEISNYSKMTKSELKFAILRKQTESIGYFFYEGILEVLPD 82 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G+GFLRS D+S L G DDIYVS SQIR+FNL TGD I+G+IRPPKEGER+FALL+V VN Sbjct: 83 GYGFLRSVDNSLLPGTDDIYVSQSQIRKFNLFTGDIIAGQIRPPKEGERFFALLRVEAVN 142 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 PENAR+++ FENLTP + +R+ +E N ++R++DL SPIG GQRGLIVAPP Sbjct: 143 SLPPENARDRVSFENLTPEYPKTRMVLEHKNA---PYSSRIIDLFSPIGFGQRGLIVAPP 199 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 KAGKT LL++IA SIA N+PD +LLIDERPEEVT+++ V V+A+ FD + Sbjct: 200 KAGKTTLLKDIANSIAENYPDTRRYILLIDERPEEVTDIRDTVDANVIAAPFDMDPENQI 259 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 ++AEM +E KRLVE DV++L+DS+TR+AR YN VP+SGK+L+GG+D A+ PK+F Sbjct: 260 RIAEMALEHFKRLVEFGHDVVVLVDSLTRVAREYNLYVPSSGKLLSGGLDPAAVIFPKKF 319 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAAR + EGGSLTI+ATALI+TGSKMDEVI+EEFKGTGNMEL L+R+++ +R+FPAI+ Sbjct: 320 FGAARKIREGGSLTILATALIETGSKMDEVIFEEFKGTGNMELVLAREMSNERIFPAINL 379 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 SGTRKEELL + +E++ ILRK I+ M +A+EF+++ L KTND+ E ++ Sbjct: 380 KLSGTRKEELLYSPDEMKNTIILRKFINDMSPKEALEFILSLLRKHKTNDEIMEAIE 436 >UniRef50_Q7UGV0 Probable transcription termination factor n=1 Tax=Rhodopirellula baltica RepID=Q7UGV0_RHOBA Length = 514 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 222/420 (52%), Positives = 313/420 (74%), Gaps = 7/420 (1%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +N+ +L+ EL+ L E GL+ +A + +Q+++F +LK + ++G+G LEIL D Sbjct: 94 LNINDLQKLEHDELLALAETEGLQEIAALPRQELVFRLLKARMSANGLMYGEGTLEILPD 153 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRSA YL+ PDDIYVSPSQIRRF L TG ++G+IRPPKE ERYFALL++ +N Sbjct: 154 GFGFLRSAQYHYLSCPDDIYVSPSQIRRFGLHTGSHVAGQIRPPKENERYFALLRIEAIN 213 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 P + + F++LTPLH +R+ E +++L+ RV+DL +PIG GQRGLIV+PP Sbjct: 214 HADPMQRQRQKPFDDLTPLHPRTRIVTEH---DSQELSTRVVDLFTPIGFGQRGLIVSPP 270 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG---EVVASTFDEPAS 237 +AGKTML+Q++A+ + N+PD ++VLLIDERPEEVT+M+R ++ EV++STFDEP + Sbjct: 271 RAGKTMLMQSLARGVLNNYPDAYVVVLLIDERPEEVTDMEREIQSPQCEVISSTFDEPPA 330 Query: 238 RHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVV-PASGKVLTGGVDANALHR 296 RH+QVA+MV+EKAKR+VE DV+I LDSITRLARA+N+ A+GK+LTGG+DA A+ + Sbjct: 331 RHIQVAQMVVEKAKRMVESGTDVVIFLDSITRLARAFNSDSDSATGKLLTGGLDAGAMQK 390 Query: 297 PKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 356 PK FG+AR VEEGGSLTI+ATAL+DTGS+MD+VI+EEFKGTGN+E+ L + + +RV+P Sbjct: 391 PKSIFGSARKVEEGGSLTILATALVDTGSRMDDVIFEEFKGTGNLEIVLDQDLVARRVWP 450 Query: 357 AIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 AID RSGTR+EE+L QEE +++ LR+ + +D+M LI ++ T+ N +F + Sbjct: 451 AIDLTRSGTRREEMLLDQEEHRRIETLRRDLAEHSPVDSMTELIKRMRKTQNNAEFLMSV 510 >UniRef50_C7PLF9 Transcription termination factor Rho n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLF9_CHIPD Length = 576 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 224/388 (57%), Positives = 298/388 (76%), Gaps = 8/388 (2%) Query: 30 RKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRF 89 K++ F I + I +GVLE++ DG+GFLRS+D +YL+ PDDIYVSPSQI+ F Sbjct: 196 NKKEPAFNI-----EFDGIIISEGVLEMMPDGYGFLRSSDYNYLSSPDDIYVSPSQIKLF 250 Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 L+TGDT+ G +RPPKEGE+YFALLKV +N PE R+++ F+ LTPL +LR+ Sbjct: 251 GLKTGDTVKGSVRPPKEGEKYFALLKVETINGKSPEEVRDRVPFDYLTPLFPFEKLRL-- 308 Query: 150 GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI 209 ++ + + R++DL +PIG+GQRGLIVA PK GKTMLL+ +A +IA NHP+ LMV+LI Sbjct: 309 -TTTSNNYSTRIMDLFTPIGKGQRGLIVAQPKVGKTMLLKEVANAIATNHPEVYLMVVLI 367 Query: 210 DERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 269 DERPEEVT+M+R VK EV+ASTFDEPA +HV+V+ + ++KAKRLVE DV+ILLDSITR Sbjct: 368 DERPEEVTDMERSVKAEVIASTFDEPAEKHVKVSAIALQKAKRLVECGHDVVILLDSITR 427 Query: 270 LARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDE 329 LARA+NTV PASGKVL+GGV+ANA+ +PK+FFGAAR +E GGSLTI+ATALIDTGSKMDE Sbjct: 428 LARAHNTVAPASGKVLSGGVEANAMQKPKQFFGAARKIENGGSLTILATALIDTGSKMDE 487 Query: 330 VIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHP 389 VI+EEFKGTGNMEL L RK+A +R+FPAID + S TR+++LL ++ L+++ ILR + Sbjct: 488 VIFEEFKGTGNMELQLDRKLANRRIFPAIDVSASSTRRDDLLLEKDILKRIHILRNHLAD 547 Query: 390 MGEIDAMEFLINKLAMTKTNDDFFEMMK 417 M ++M F++ + TK N++F M Sbjct: 548 MNTEESMHFMLQHMRGTKNNEEFLISMN 575 >UniRef50_D2QLY9 Transcription termination factor Rho n=2 Tax=Flexibacteraceae RepID=D2QLY9_9SPHI Length = 750 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 249/397 (62%), Positives = 308/397 (77%), Gaps = 11/397 (2%) Query: 24 ENLARMRKQDIIFAILKQHAKSG-EDIFGDGVLEILQDG-FGFLRSADSSYLAGPDDIYV 81 E R+R+Q QH + I +GVLEI+QDG +GFLRSAD +YLA PDDIYV Sbjct: 363 EYQNRIRRQ------YNQHIREFDGIIDNEGVLEIMQDGGYGFLRSADYNYLASPDDIYV 416 Query: 82 SPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHA 141 SPSQI+ F L+TGDT+ G IRPPKEGE+YFALL+V+ VN E R++I FE LTPL Sbjct: 417 SPSQIKLFGLKTGDTVRGAIRPPKEGEKYFALLRVSTVNGKTTEEIRDRIPFEYLTPLFP 476 Query: 142 NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD 201 +L + + E+ ++RVLDL +PIG+GQRG+IVA PK GKT+LL+ IA +I NHP+ Sbjct: 477 EEQLHL---SNRPENYSSRVLDLFAPIGKGQRGMIVAQPKTGKTVLLKEIANAITKNHPE 533 Query: 202 CVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 L+VLLIDERPEEVT+M R V EV++STFDE A RHV+V+ MV+EKAKR+VE DV+ Sbjct: 534 VYLIVLLIDERPEEVTDMARSVNAEVISSTFDEQADRHVKVSSMVLEKAKRMVECGHDVV 593 Query: 262 ILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALI 321 ILLDSITRLARAYNTVVP+SGK+L+GGVDANALHRPKRFFGAARNVE GGSLTIIATALI Sbjct: 594 ILLDSITRLARAYNTVVPSSGKILSGGVDANALHRPKRFFGAARNVENGGSLTIIATALI 653 Query: 322 DTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMW 381 DTGSKMDEVI+EEFKGTGNMEL L RK+A KRV+PAID SGTR+E+LL +E LQ++W Sbjct: 654 DTGSKMDEVIFEEFKGTGNMELQLDRKLANKRVYPAIDVMASGTRREDLLLDKETLQRVW 713 Query: 382 ILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 ILRK + M +++M+FL+ + T++N++F M R Sbjct: 714 ILRKHMADMNPMESMDFLLGHMKGTRSNEEFLISMNR 750 >UniRef50_D1PY04 Transcription termination factor Rho n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PY04_9BACT Length = 666 Score = 504 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 220/371 (59%), Positives = 284/371 (76%), Gaps = 1/371 (0%) Query: 47 EDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKE 106 + I +GVLEI+ DG+GFLRS+D +YL+ PDDIYV+ QI+ +NL+TGD + +RPP+E Sbjct: 296 DIIEANGVLEIMPDGYGFLRSSDYNYLSSPDDIYVAGQQIKHYNLKTGDVVMCHVRPPRE 355 Query: 107 GERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAS 166 GE+YF L ++ +N P R++I FE+LTPL + + G+ T +++ R++DL S Sbjct: 356 GEKYFPLTSIDMINGRTPAEVRDRIPFEHLTPLFPEEKFTL-CGDSKTTNMSTRIVDLFS 414 Query: 167 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE 226 PIG+GQR LIVA PK GKT+L++NIA +IA NHP+ LM+LLIDERPEEVT+M R V E Sbjct: 415 PIGKGQRALIVAQPKTGKTILMKNIANAIAANHPEAYLMMLLIDERPEEVTDMARTVDAE 474 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT 286 V+ASTFDEPA RHV++A +V+EKAKR+VE DV+I LDSITRLARAYNTV PASGKVLT Sbjct: 475 VIASTFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGKVLT 534 Query: 287 GGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 GGVDANAL +PKRFFGAARN+E+GGSLTIIATALIDTGSKMDEVI+EEFKGTGNMEL L Sbjct: 535 GGVDANALQKPKRFFGAARNIEKGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLD 594 Query: 347 RKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMT 406 R ++ KR+FP+++ S TR+++LL + L +MWILRK I M I+AM + ++ T Sbjct: 595 RSLSNKRIFPSVNLIASSTRRDDLLQDKTTLDRMWILRKYISDMNPIEAMNTIHGRMQQT 654 Query: 407 KTNDDFFEMMK 417 N +F M Sbjct: 655 HDNAEFLLSMN 665 >UniRef50_C2D7C6 Possible transcription termination factor Rho n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7C6_9ACTN Length = 720 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 211/411 (51%), Positives = 284/411 (69%), Gaps = 8/411 (1%) Query: 4 TELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFG 63 +L V+EL + +GLE + +RK+ +I I + A S GVL+I DG+G Sbjct: 298 EQLSTMKVAELRAKAQELGLET-SGVRKKVLIEQIYRAAAASEGFASIQGVLDIQPDGYG 356 Query: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDK 123 F+R+ +Y++G +D +V IR++ LR GD I G++ P + ++ L K+ ++N Sbjct: 357 FIRTG--NYMSGDNDAFVHQQLIRQYGLRPGDWIDGRVSPSRNN-KFPPLHKIVQINGKT 413 Query: 124 PENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAG 183 PE R + F +LTP++ + RL ME G S +T R +DL +PIG+GQRGLIV+PPKAG Sbjct: 414 PEEIRKRPRFRDLTPVYPDERLIMENGQQS---ITGRAIDLVAPIGKGQRGLIVSPPKAG 470 Query: 184 KTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVA 243 KT +L+ I QSI N+P+ L LL+DERPEEVT+MQR +KG VVASTFD PA H V+ Sbjct: 471 KTTILKKICQSITANNPEVHLFCLLVDERPEEVTDMQRSIKGTVVASTFDMPAENHTSVS 530 Query: 244 EMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGA 303 E+VIE AKRLVE +DV+++LDSITRLARAYN PASG+VL+GGVD+ AL+ PK+F GA Sbjct: 531 ELVIEHAKRLVELGQDVVVVLDSITRLARAYNLAQPASGRVLSGGVDSAALYPPKKFLGA 590 Query: 304 ARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRS 363 ARN+E GGSLTI+A+ALIDTGSKMDEVI+EEFKGTGNMEL L R +A++R+FPAID S Sbjct: 591 ARNIEHGGSLTILASALIDTGSKMDEVIFEEFKGTGNMELKLDRDLADRRIFPAIDPVSS 650 Query: 364 GTRKEELLTTQEELQKMWILRKIIHPMGEID-AMEFLINKLAMTKTNDDFF 413 GTR E+LL +E +W LR+++ M + A L+ L TK N+DF Sbjct: 651 GTRNEDLLIAKELQPFVWGLRRVLANMNNTERAASALVKGLKETKDNEDFL 701 >UniRef50_D0MEG0 Transcription termination factor Rho n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEG0_RHOM4 Length = 518 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 228/375 (60%), Positives = 297/375 (79%), Gaps = 3/375 (0%) Query: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102 + I GVLEI+ DG+GFLRS D +YL GPDDIYVSPSQI+RF+LR GDTI G +R Sbjct: 146 TELEGMIIKSGVLEIMPDGYGFLRSPDYNYLPGPDDIYVSPSQIKRFSLRLGDTIEGLVR 205 Query: 103 PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162 PPKEGER+FAL++V++VN PE + F+ LTPL+ ++R+E S + + R+L Sbjct: 206 PPKEGERFFALIQVHKVNGRPPEEMEERQSFDYLTPLYPTEQIRLET---SPNEYSTRIL 262 Query: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222 DL +PIG+GQRGLIVAPPK GKT+LLQ IA +I NHP+ L++LL+DERPEEVT+M+R Sbjct: 263 DLFAPIGKGQRGLIVAPPKTGKTILLQKIANAITTNHPEIYLIILLVDERPEEVTDMERN 322 Query: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282 VK EV++STFD+ RHV+VA++V+EKAKRLVE K+DV+ILLDSITRLARA+N V P++G Sbjct: 323 VKAEVISSTFDQDPERHVEVADIVLEKAKRLVEAKQDVVILLDSITRLARAHNAVTPSTG 382 Query: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 K L+GG++A AL PKRFFGAARNVEEGGSLTII TALI+TGS+MDEVI+EEFKGTGNME Sbjct: 383 KTLSGGIEAGALRGPKRFFGAARNVEEGGSLTIIGTALIETGSRMDEVIFEEFKGTGNME 442 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 L L R++A++R+FPAI +SGTR+EELL + +L ++W+LRKI+ M ++AM FL+ K Sbjct: 443 LVLDRQLADRRIFPAIHLIKSGTRREELLIPEAKLHRIWLLRKILADMDPVEAMIFLLEK 502 Query: 403 LAMTKTNDDFFEMMK 417 + T++ND+F M Sbjct: 503 MRGTRSNDEFLVTMN 517 Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSG 46 M ++EL+ +SEL L +GL + +RKQD+I+ IL+ A++ Sbjct: 1 MKISELQAKKISELRELARELGLTGYSTLRKQDLIYRILEAQAEAE 46 >UniRef50_P52153 Transcription termination factor rho n=16 Tax=Bacteria RepID=RHO_DEIRA Length = 426 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 210/417 (50%), Positives = 291/417 (69%), Gaps = 4/417 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 + EL+ + EL L +G+EN +++K + AI+++ A + G L+I D Sbjct: 11 LPFQELQEKILPELHLLAAGLGIENYRKLKKDALALAIMEKQADAEGQSLARGYLDITSD 70 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G+GFL++ + V+ I++++LRTGD + G+ R P+E ERY +L++V VN Sbjct: 71 GYGFLQADLLD--PASRSVLVTAGVIKQYHLRTGDEVIGRARKPRENERYGSLVRVEAVN 128 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 PE AR + F++LTP + +L +E + + L+ RV+DL PIGRGQR LIVAPP Sbjct: 129 GLDPEAARQRPRFDDLTPTFPDQQLVLE-DPSTDDGLSLRVVDLLVPIGRGQRALIVAPP 187 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-EVVASTFDEPASRH 239 KAGKT LL+ IA SI N+PD +MVLL+DERPEEVT+ + V+G +V+ASTFDEP H Sbjct: 188 KAGKTTLLKKIANSITKNYPDVTVMVLLVDERPEEVTDFRESVQGAQVIASTFDEPPQHH 247 Query: 240 VQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKR 299 V+VAE V E+A+R+VE V+ILLDSITRLARA N V P +G+ L+GG+D+NALH PKR Sbjct: 248 VRVAEFVHERARRIVEEGGHVVILLDSITRLARANNLVTPPTGRTLSGGLDSNALHWPKR 307 Query: 300 FFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID 359 F GAARN+ EGGSLTI+ATAL++TGS+MD+VI+EEFKGTGN EL LSR++ E+R+FPA+D Sbjct: 308 FLGAARNIREGGSLTILATALVETGSRMDDVIFEEFKGTGNAELVLSRRLEERRIFPALD 367 Query: 360 YNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 +SGTR+EELL E L+KMW+LRK+I M DAME L+ ++ T+ N +F + Sbjct: 368 ILKSGTRREELLLQPEVLKKMWLLRKVISDMDPADAMEMLLGRMGKTRNNVEFLAAL 424 >UniRef50_D1P9V5 Transcription termination factor Rho n=1 Tax=Prevotella copri DSM 18205 RepID=D1P9V5_9BACT Length = 743 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 214/369 (57%), Positives = 281/369 (76%), Gaps = 1/369 (0%) Query: 49 IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGE 108 + +GVLE++ +G+GFLRS+D +YL+ PDD+YV+ S +++F L+TGD I K+RPP EGE Sbjct: 375 VKSNGVLEVISEGYGFLRSSDYNYLSSPDDVYVASSFVKKFGLKTGDVIECKVRPPHEGE 434 Query: 109 RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPI 168 +YF L + ++N P R+++ FE+LTPL + + + G+ T +L+ R++DL SPI Sbjct: 435 KYFPLTSIIKINGRDPSEVRDRVPFEHLTPLFPDEKFNL-CGDRRTTNLSTRIVDLFSPI 493 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVV 228 G+GQR LIVA PK GKT+L+++IA +IA NHP+ LM+LLIDERPEEVT+M R V EV+ Sbjct: 494 GKGQRALIVAQPKTGKTILMKDIANAIAANHPEAYLMMLLIDERPEEVTDMARTVNAEVI 553 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGG 288 ASTFDEPA RHV++A +V+EKAKR+VE DV+I LDSITRLARAYNT PASGKVLTGG Sbjct: 554 ASTFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTTAPASGKVLTGG 613 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 VDANAL +PKR FGAARN+E GGSLTIIATAL DTGSKMDEVI+EEFKGTGNMEL L R Sbjct: 614 VDANALQKPKRLFGAARNIEGGGSLTIIATALTDTGSKMDEVIFEEFKGTGNMELQLDRS 673 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKT 408 ++ KR+FPA++ S TR+++LL + L +MWILRK + M I+AM + + T+ Sbjct: 674 LSNKRIFPAVNLISSSTRRDDLLQDKTTLDRMWILRKYLSDMNSIEAMSTIHKNMQHTRN 733 Query: 409 NDDFFEMMK 417 ND+F M Sbjct: 734 NDEFLLSMN 742 >UniRef50_B1ZZF9 Transcription termination factor Rho n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZZF9_OPITP Length = 448 Score = 485 bits (1250), Expect = e-136, Method: Composition-based stats. Identities = 190/417 (45%), Positives = 273/417 (65%), Gaps = 2/417 (0%) Query: 3 LTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGF 62 L EL +++L + MG ++ ++ ++ A+ + G +++ G Sbjct: 34 LNELYALNLADLTSFARGMGASFEGAPNRKQLLTQVITAAAEQKRPMRDRGYIDVTDRGC 93 Query: 63 GFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFD 122 F+ +Y PDD Y+ S ++ + L+ G + ++ P+ GER ++++V+ V Sbjct: 94 -FIVHEHVNYRLYPDDAYLPESLMQLYGLKRGHRVEALVQAPQAGERCPSVVRVDSVMGM 152 Query: 123 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKA 182 P FE L P + R+ +E +D++ R +D+ +PIG GQR LIVAPP+ Sbjct: 153 PPSEISKVTPFEELIPYYPLQRILLELEEPQ-KDVSMRAVDILTPIGFGQRALIVAPPRT 211 Query: 183 GKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQV 242 GKT+LLQNIA SI N P L++LLIDERPEEVT+ +R KGEVV+STFDE HV Sbjct: 212 GKTILLQNIANSITANSPQTKLILLLIDERPEEVTDFRRHTKGEVVSSTFDETPESHVHC 271 Query: 243 AEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFG 302 AEMVIE A+R VE + V+ILLDSITRLARAYN + GK ++GG+++NAL +PKRFFG Sbjct: 272 AEMVIENARRRVEQGEHVVILLDSITRLARAYNALAGNQGKTMSGGLESNALQKPKRFFG 331 Query: 303 AARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 362 +ARN+E GGSLTI+A+ALIDTGS+MDE+I+EEFKGTGN ELHL R + E+R+FPAI+ +R Sbjct: 332 SARNIEGGGSLTIVASALIDTGSRMDEIIFEEFKGTGNCELHLDRGLVERRIFPAINIDR 391 Query: 363 SGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419 SGTRKEEL+ EELQ+++ LR+ + +G I++ME LI +L TK+N +F + R+ Sbjct: 392 SGTRKEELIYHPEELQRIYGLRRAMQGLGPIESMEMLITRLKKTKSNAEFLLGLSRT 448 >UniRef50_B5JM54 Rho termination factor, RNA-binding domain family n=2 Tax=Verrucomicrobia RepID=B5JM54_9BACT Length = 682 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 203/419 (48%), Positives = 281/419 (67%), Gaps = 2/419 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 ++LT L V + +G E + ++ I A+ K + + + G L+ D Sbjct: 264 IDLTSLYELKVEPMAAAVRELGAELEEKCSRKQAIEALYKVSREGKKVLKDTGFLDTSDD 323 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G G++ + S+Y P+ +YV S IR + L+ G + P+EGER A L++ Sbjct: 324 GHGYIVHSASNYQLKPESVYVPASLIREYGLQRGHELEVLAIAPEEGERCPAALRIVSAM 383 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGST--EDLTARVLDLASPIGRGQRGLIVA 178 PE+ FE+L P + RL +ER + T +D++ R DL +PIG GQRGLIVA Sbjct: 384 GGAPEDLAKVTPFEDLIPYYPTERLVLERPDPGTNKKDVSMRAFDLLTPIGFGQRGLIVA 443 Query: 179 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASR 238 PP+ GKT+LLQ +A SI N D L+VLLIDERPEEVT+ +R VKGEVV+STFDE + Sbjct: 444 PPRTGKTILLQGLAHSIQENWKDTHLIVLLIDERPEEVTDFRRQVKGEVVSSTFDETPTS 503 Query: 239 HVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPK 298 HV AEMV EKA+R+VE K+V+ILLDSITRLARAYN + SGK+++GG++A A+ +PK Sbjct: 504 HVHCAEMVCEKARRMVEQGKNVVILLDSITRLARAYNALASNSGKIMSGGIEATAMQKPK 563 Query: 299 RFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAI 358 RFFG+ARN+E GGSLTI+ +AL+DTGSKMDEVI+EEFKGTGNME+HL R + KRVFPAI Sbjct: 564 RFFGSARNIEGGGSLTIMGSALVDTGSKMDEVIFEEFKGTGNMEIHLDRDLINKRVFPAI 623 Query: 359 DYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 ++ RSGTRKEELL +E++K++ LR+++ + ++AME LI +L +TK N +F +K Sbjct: 624 NFERSGTRKEELLYHPQEMEKVYGLRRVMQGVPGVEAMEMLIKRLKVTKNNIEFLMSLK 682 >UniRef50_D1VSG2 Transcription termination factor Rho n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSG2_9FIRM Length = 586 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 226/430 (52%), Positives = 297/430 (69%), Gaps = 25/430 (5%) Query: 4 TELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGD----------- 52 +E ++ EL T EN+ E++ +D I I + HAK + Sbjct: 154 SEDQDDKDKELYTPDENLE-EDIEDNELEDEIDKIEESHAKKFGIELDEISNNATEAVGK 212 Query: 53 --------GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPP 104 G+LE+ QDG+GFLR S++L DIYVSPSQIRRF LR GD I G +RP Sbjct: 213 MDDAKYVCGILELHQDGYGFLR--VSNFLPSEGDIYVSPSQIRRFRLRNGDKILGIVRPS 270 Query: 105 KEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDL 164 K+GE Y L+ +NEVN KP A N+ FENLTP++ +++ME +D+ RV+DL Sbjct: 271 KDGESYNGLIYINEVNDKKPNLATNRPYFENLTPIYPREKIKME---FDPKDIATRVIDL 327 Query: 165 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK 224 P+G+GQRGLIV+PPK+GKT LL+ IA+SI N+P+ L VLLIDERPEEVT+MQR VK Sbjct: 328 ICPVGKGQRGLIVSPPKSGKTTLLKKIAKSIEKNYPEIELFVLLIDERPEEVTDMQRSVK 387 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 G+VV STFDE H +VAEMV+++AKRLVE KDV+ILLDS+TRL+RAYN + P+SGK Sbjct: 388 GQVVYSTFDETPKNHTRVAEMVLDRAKRLVEQGKDVVILLDSLTRLSRAYNLITPSSGKT 447 Query: 285 LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELH 344 L+GG+D +LH+PKRFFGAARN+EEGGSLTI+ATAL++TGS+MD++I+EEFKGTGNMELH Sbjct: 448 LSGGLDPLSLHKPKRFFGAARNIEEGGSLTILATALVETGSRMDDIIFEEFKGTGNMELH 507 Query: 345 LSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 L RK++EKR+FPAID +SGTRKEELL Q+EL + +R + + E L++++ Sbjct: 508 LDRKLSEKRIFPAIDIYKSGTRKEELLLNQDELNFAFNIRNAMSYNSSNEVTEVLLDEMT 567 Query: 405 MTKTNDDFFE 414 T N F Sbjct: 568 KTINNKTFVR 577 >UniRef50_C2MD13 Transcription termination factor Rho n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MD13_9PORP Length = 618 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 206/372 (55%), Positives = 276/372 (74%), Gaps = 2/372 (0%) Query: 48 DIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEG 107 + G+LE+ QDG+GFLRS+D +Y PDDIYV I++++L+TGD I G IRPPK Sbjct: 246 ILTASGLLEVAQDGYGFLRSSDYNYFPSPDDIYVPGDMIKKWHLKTGDVIEGSIRPPKGS 305 Query: 108 ERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGST--EDLTARVLDLA 165 E+YF L + VN P++ +++ F+ LTPL + ++E + + R++DL Sbjct: 306 EKYFLLQNILLVNGRHPKDNLDRVSFDMLTPLFPEEKFKLESQGIAAVYDKTAMRIVDLV 365 Query: 166 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG 225 +PIG+GQRGLIVA PK GKTMLL++IA +I+ NHP+ +++LLIDERPEEVT+M R V Sbjct: 366 TPIGKGQRGLIVAQPKTGKTMLLKDIANAISANHPEVYMIILLIDERPEEVTDMARNVNA 425 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 EVVASTFDEPA HV++AE+V+ KAK +VE DV+I+LDSITRLARAYNTV P SGK+L Sbjct: 426 EVVASTFDEPADHHVKLAELVLAKAKSMVESGHDVLIMLDSITRLARAYNTVQPTSGKIL 485 Query: 286 TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 +GG++ANAL +PKRFFGAARN+E GGSLTI+ATAL +TGSKMD+VI+EEFKG GNMEL L Sbjct: 486 SGGIEANALQKPKRFFGAARNIEHGGSLTILATALTETGSKMDDVIFEEFKGAGNMELQL 545 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 R+++ KR+FPAID S TR+++LL LQ+MWILR + M ++AMEFL ++ + Sbjct: 546 DRRLSNKRIFPAIDILASSTRRDDLLLDSTTLQRMWILRNHLSDMNTVEAMEFLKQRIEL 605 Query: 406 TKTNDDFFEMMK 417 T+TN +F M Sbjct: 606 TETNLEFLASMN 617 >UniRef50_B1I6H8 Transcription termination factor Rho n=6 Tax=Bacteria RepID=B1I6H8_DESAP Length = 492 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 233/374 (62%), Positives = 285/374 (76%), Gaps = 5/374 (1%) Query: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103 G LEIL +G+GFLR S +L DDIYVS SQIR+F+LRTGD +SG++RP Sbjct: 101 DRSRLFQAQGYLEILPEGYGFLR--PSQFLPSNDDIYVSASQIRKFDLRTGDLVSGQVRP 158 Query: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163 PK+ E+Y ALL+V VN ++ A + F+ LTPL+ RL +E S + + AR++D Sbjct: 159 PKDTEKYLALLRVETVNGEEAALAGRRRHFDELTPLYPQERLTLET---SPDRIAARIID 215 Query: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223 L SP+G+GQRGLIVAPPKAGKT LL+ IA SI NHP+ VLM+LLIDERPEEVT++QR V Sbjct: 216 LISPLGKGQRGLIVAPPKAGKTTLLKEIANSITSNHPEVVLMILLIDERPEEVTDIQRSV 275 Query: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283 K EV+ASTFDEPA HV+V EMV+E+AKRLVEHKKDV ILLDSITRL RAYN VVP SG+ Sbjct: 276 KAEVIASTFDEPAENHVRVTEMVLERAKRLVEHKKDVAILLDSITRLGRAYNLVVPTSGR 335 Query: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 L+GGVD ALH+PKRFFGAAR +EEGGSLTI+ATALI+TGS+MDEVI+EEFKGTGNMEL Sbjct: 336 TLSGGVDPAALHKPKRFFGAARKIEEGGSLTILATALIETGSRMDEVIFEEFKGTGNMEL 395 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKL 403 L R+I+E+R+FPAID RSGTRKEELL T +EL+ MW RK + M DAME LI ++ Sbjct: 396 ILDRRISERRIFPAIDVQRSGTRKEELLLTSDELELMWYFRKTTNQMSSSDAMEHLIEEM 455 Query: 404 AMTKTNDDFFEMMK 417 T++N D + Sbjct: 456 RRTRSNRDLLRNFQ 469 >UniRef50_C8WA24 Transcription termination factor Rho n=133 Tax=Bacteria RepID=C8WA24_ATOPD Length = 701 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 203/409 (49%), Positives = 279/409 (68%), Gaps = 7/409 (1%) Query: 6 LKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFL 65 L+ +SEL +G+E A + K D+I + A + +G+L+I +G+G++ Sbjct: 284 LQEMKLSELRAKATELGIE-YAGVHKSDLIELVYAASAAAEGFKTVEGILQISNEGYGWI 342 Query: 66 RSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPE 125 R+ +Y+ G +D +V IR LR GD++ G + P + +Y LL+V +VN + E Sbjct: 343 RTG--NYMEGDNDAFVHQQIIRNLGLRPGDSVLGMVGPARVNSKYPPLLQVTQVNGGEVE 400 Query: 126 NARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKT 185 +++ F++LTP+ N L ME G S +T R +DL +PIG+GQRGLIV+PPKAGKT Sbjct: 401 GLKDRPRFKDLTPIFPNQPLTMEHGKDS---ITGRAIDLVAPIGKGQRGLIVSPPKAGKT 457 Query: 186 MLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEM 245 +L+ I QSI N+P+ L LL+DERPEEVT+M+R +KG VVASTFD PA H V+E+ Sbjct: 458 TILKRICQSITINNPEVHLFCLLVDERPEEVTDMERSIKGTVVASTFDMPAENHTVVSEL 517 Query: 246 VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAAR 305 VIE+AKRLVE +DV+++LDSITRLARAYN +PASG++L+GGVD+ AL+ PK+F GAAR Sbjct: 518 VIERAKRLVEMGQDVVVILDSITRLARAYNLAIPASGRILSGGVDSAALYPPKKFLGAAR 577 Query: 306 NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT 365 N+E GGSLTIIA+AL+DTGSKMDEVI+EEFKGTGNMEL L R +A++R+FPAID SGT Sbjct: 578 NIESGGSLTIIASALVDTGSKMDEVIFEEFKGTGNMELKLDRDLADRRIFPAIDPVSSGT 637 Query: 366 RKEELLTTQEELQKMWILRKIIHPMGEID-AMEFLINKLAMTKTNDDFF 413 R E+LL E +W +R+I+ + A LI+ L T N DF Sbjct: 638 RNEDLLIKPELQPMVWGVRRILAGFNNTERATTALISGLKQTDNNQDFL 686 >UniRef50_Q0TNA5 Transcription termination factor Rho n=24 Tax=Bacteria RepID=Q0TNA5_CLOP1 Length = 489 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 212/392 (54%), Positives = 290/392 (73%), Gaps = 13/392 (3%) Query: 30 RKQDIIFAILKQHAKSGEDIFGDGVLEILQDG-FGFLRSADSSYLAGPDDIYVSPSQIRR 88 +K+ + I + G+LEIL + FGFLR +YL DDIYVSPSQIRR Sbjct: 105 KKEQLKDMISSSDSAK-------GILEILDNNNFGFLRC--RNYLTSEDDIYVSPSQIRR 155 Query: 89 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRME 148 F LRTGD + GK+R PK+GE++ ALL V VN + PE A + FE LTP++ RLR+E Sbjct: 156 FGLRTGDEVQGKVRIPKDGEKFKALLYVERVNGESPEKAVGRKKFEELTPIYPKERLRLE 215 Query: 149 RGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 NG DL++R++D+ PIG+GQRG+IVAPPKAGKT LL+ IAQ+I+ N+P+ L+VLL Sbjct: 216 TENGR--DLSSRLMDIICPIGKGQRGMIVAPPKAGKTTLLKRIAQNISKNNPEVKLIVLL 273 Query: 209 IDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 268 IDERPEEVT+M+R + GEV+ STFDE H +V+ +V+E+AKR+VE +DV+IL+DS+T Sbjct: 274 IDERPEEVTDMKRSIDGEVIYSTFDEEPQNHAKVSSIVLERAKRMVEQGRDVVILMDSLT 333 Query: 269 RLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMD 328 RL+RAYN V SG+ L+GG+D AL PK+FFGAARN+EEGGSLTI+AT+L+DTGS+MD Sbjct: 334 RLSRAYNLTVTPSGRTLSGGLDPGALIMPKKFFGAARNLEEGGSLTILATSLVDTGSRMD 393 Query: 329 EVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIH 388 ++I+EEFKGTGNME+HL RK+ E+R+FPAID +SGTRKE+LL +EE + + +R+++ Sbjct: 394 DMIFEEFKGTGNMEVHLDRKLQERRIFPAIDIYKSGTRKEDLLFNEEEREASYKIRRVLQ 453 Query: 389 PMGEIDAM-EFLINKLAMTKTNDDFFEMMKRS 419 I+ + E LIN L+ TK N +F +++ +S Sbjct: 454 KENNIEDVAEKLINLLSKTKNNKEFLQVVLKS 485 >UniRef50_Q1AVG2 Transcription termination factor Rho n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVG2_RUBXD Length = 498 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 212/376 (56%), Positives = 283/376 (75%), Gaps = 6/376 (1%) Query: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103 + E + GVL++L DGFGFLR+ S Y +D+Y+S SQI+RFNLR GD I G+IRP Sbjct: 125 ERDESLVQSGVLDVLPDGFGFLRT--SGYSQSKNDVYISTSQIKRFNLRRGDYIVGQIRP 182 Query: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163 + GE+Y A++++ +N + + R + F++LTPL+ RLR+E D+ RV+D Sbjct: 183 ARNGEKYPAMVRIETINGREAQKGRWRPNFDDLTPLYPMERLRLE---WKPNDIAPRVID 239 Query: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223 L +PIG+GQRGLIV+PPKAGKT +L+ IAQSIA N+P+ L VLL DERPEEVT+ +R V Sbjct: 240 LVAPIGKGQRGLIVSPPKAGKTTILKQIAQSIAANYPEVRLFVLLADERPEEVTDWERSV 299 Query: 224 K-GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282 + EVVASTFD+PA H+ VAE+V+E+ KRLVE +DV++LLDSITRLARAYN PASG Sbjct: 300 REAEVVASTFDQPAENHIAVAELVLERVKRLVEEGEDVVVLLDSITRLARAYNLAAPASG 359 Query: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 ++L+GGVD+ AL+ PK+FFGAARN+E GGSLTI+A+ALIDTGS+MDEVIYEEFKGTGNME Sbjct: 360 RILSGGVDSAALYPPKKFFGAARNIENGGSLTILASALIDTGSRMDEVIYEEFKGTGNME 419 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 +HL RK+A +R++PAI+ SGTRKEELL E Q++W +R I++ + +E LI K Sbjct: 420 IHLDRKLANRRIYPAINIEDSGTRKEELLMEPAEAQRVWQVRNILNALDTAAKIELLIQK 479 Query: 403 LAMTKTNDDFFEMMKR 418 L T+TN +F ++R Sbjct: 480 LKETRTNAEFLRQLQR 495 >UniRef50_C9RLJ9 Transcription termination factor Rho n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLJ9_FIBSS Length = 689 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 215/449 (47%), Positives = 296/449 (65%), Gaps = 37/449 (8%) Query: 2 NLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61 N + + +SEL L + + RMRKQ + + IL+ G I+ +GVLE+ G Sbjct: 243 NWLKFRKLSMSELQELAVQKEV-DFRRMRKQSLNY-ILQSLENEGNIIYTEGVLEVTPQG 300 Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 GFLR D +Y DD+YVS + IR+FNL+ GDTI G +R P++ ++YF++ +++ VNF Sbjct: 301 HGFLRMPDQNYQTSADDVYVSQNLIRKFNLKIGDTIEGLVRTPRDQDKYFSMRRIDRVNF 360 Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 ++P+ R ++ FE LTP+H ++ +E + + + R++DL SPIG+GQR +I+APP+ Sbjct: 361 EEPDKMRRRVAFEYLTPIHPEEKIHLE---WNETEYSTRIMDLFSPIGKGQRSIILAPPR 417 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL--------------VKGEV 227 GKT+LLQN+ ++IA NHP+ +L+ LLIDERPEEVTEM+ + +K EV Sbjct: 418 TGKTVLLQNVTRAIAKNHPEIILITLLIDERPEEVTEMRDIITDIKEKAAEKGIEIKAEV 477 Query: 228 VASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG 287 VASTFDEP H +VA MV+EKAKRLVE +KDV+ILLDSITR ARA N V+P SGK+L+G Sbjct: 478 VASTFDEPPEHHTRVANMVLEKAKRLVESQKDVVILLDSITRFARANNVVIPHSGKILSG 537 Query: 288 GVDANALHRPKRFFGAARNVEEG------------------GSLTIIATALIDTGSKMDE 329 GVDANA+ PK+FFGAAR +++ GSLTII TALI+TGS+MDE Sbjct: 538 GVDANAMQFPKKFFGAARKIQDKIRTVKNEDGTISEEVQKNGSLTIIGTALIETGSRMDE 597 Query: 330 VIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHP 389 VI+EEFKGTGNMEL L R+IAEKR++PAID +SGTRKEE L T E W R+ Sbjct: 598 VIFEEFKGTGNMELVLDRRIAEKRIWPAIDVFKSGTRKEERLLTLLEQNAAWNFRRGSQN 657 Query: 390 MGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 E ME L+ ++ KTN + ++ + Sbjct: 658 ETETGIMENLLKLMSKLKTNAELLAVLSK 686 >UniRef50_C7HUP3 Transcription termination factor Rho n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HUP3_9FIRM Length = 451 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 207/452 (45%), Positives = 304/452 (67%), Gaps = 39/452 (8%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKS--------------- 45 +N+ +L + EL +G+N+ +++L+ RK +++ I + ++ S Sbjct: 3 ININDLDKLKLDELREIGKNLSIKSLSSYRKNELVEIIKEAYSNSKNFENNESSSNDLDD 62 Query: 46 -------GEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIS 98 GE +G+L++ +DGFGFLR+ Y + DDIYVSP Q++ F L+TGD I Sbjct: 63 SNENFDLGEKFNCEGLLDLHEDGFGFLRT--ELYESSNDDIYVSPKQVKMFRLKTGDFIK 120 Query: 99 GKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLT 158 G R K+ +++ L+ V++VN K +A N+ FE+LTP++ N +L++E S + ++ Sbjct: 121 GIARVKKDKDKFSPLIFVSDVNGLKAADAFNRSNFESLTPIYPNQKLKLET---SKDKIS 177 Query: 159 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE 218 R++D+ +PIGRGQRGLIV+ PKAGKT L+++I ++ N D ++VLLIDERPEEVT+ Sbjct: 178 QRIIDIIAPIGRGQRGLIVSQPKAGKTTLIKDIEYALEKNFDDLKILVLLIDERPEEVTD 237 Query: 219 MQRLV-----------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 267 +R V + EV ASTFD+ H+ + EMV+E+AKRLVE KDV+ILLDSI Sbjct: 238 FKRFVNQYRDKDNELTRTEVAASTFDKAPQNHIYMQEMVLERAKRLVEDNKDVVILLDSI 297 Query: 268 TRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKM 327 TRLARAYN + P SG+ L+GG+D AL PK+FFGAARN+E GGSLTIIATAL+DTGS+M Sbjct: 298 TRLARAYNIMTPQSGRTLSGGLDPLALIGPKKFFGAARNIENGGSLTIIATALVDTGSRM 357 Query: 328 DEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKII 387 D+++YEEFKGTGNMELHL RK+A++R+FPAID +S TRK+ LL + +EL+ ++ LR Sbjct: 358 DDMVYEEFKGTGNMELHLDRKLAQRRIFPAIDIEKSSTRKDNLLLSNKELEAVYKLRNS- 416 Query: 388 HPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419 ++D LIN +A K+ND+F E++ ++ Sbjct: 417 DMKDKMDFTNELINLMAKCKSNDEFVELINKT 448 >UniRef50_A9KHD0 Transcription termination factor Rho n=13 Tax=Clostridiales RepID=A9KHD0_CLOPH Length = 650 Score = 472 bits (1216), Expect = e-132, Method: Composition-based stats. Identities = 204/399 (51%), Positives = 286/399 (71%), Gaps = 10/399 (2%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSP 83 L++ +Q+ I + SGE +G+LE+L DG+GF+R ++L G +D+YVSP Sbjct: 257 RFLSQANQQEEKLPIDMEQLDSGE--TKEGILEVLSDGYGFIRC--DNFLPGENDVYVSP 312 Query: 84 SQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANS 143 +QIRRFNL+TGD I G R + E++ ALL + +N P A + FE+LTP+ N Sbjct: 313 AQIRRFNLKTGDIIVGNTRIRNQNEKFSALLYIKLINGLHPSEAVKRKKFEDLTPIFPNE 372 Query: 144 RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 203 R+ +E + R++DL SPIG+GQRG+IV+ PK GKT LL+ +A++I NHP+ Sbjct: 373 RIHLETPGCQ---VAMRMVDLISPIGKGQRGMIVSQPKTGKTTLLKQVAKAITRNHPEMH 429 Query: 204 LMVLLIDERPEEVTEMQRLVKG---EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260 L++LLIDERPEEVT+++ ++G EV+ STFDE H +V+EMVIE+AKRLVEHKKDV Sbjct: 430 LIILLIDERPEEVTDIKESIEGGNVEVIYSTFDELPENHKRVSEMVIERAKRLVEHKKDV 489 Query: 261 IILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 +ILLDSITRLARAYN V ASG+ L+GG+D ALH PK+FFGAARN+ EGGSLTI+ATAL Sbjct: 490 VILLDSITRLARAYNLTVQASGRTLSGGLDPAALHMPKKFFGAARNMREGGSLTILATAL 549 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 ++TGS+MD+V++EEFKGTGNMEL L R ++EKR+FPAID +S TR+++LL E++ Sbjct: 550 VETGSRMDDVVFEEFKGTGNMELVLDRNLSEKRIFPAIDLPKSSTRRDDLLLNSAEVEAN 609 Query: 381 WILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419 +++RK ++ + DA+E +I TK N +F EM+K++ Sbjct: 610 YLMRKALNGLKSEDAVERIIQMFVNTKNNAEFVEMIKKT 648 >UniRef50_P52157 Transcription termination factor rho n=260 Tax=cellular organisms RepID=RHO_STRLI Length = 707 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 213/374 (56%), Positives = 287/374 (76%), Gaps = 9/374 (2%) Query: 49 IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGE 108 I G+L+IL D + F+R+ S YL GP+D+YVS +Q+R+ LR GD ++G +R PKEGE Sbjct: 332 IPVAGILDIL-DNYAFIRT--SGYLPGPNDVYVSLAQVRKNGLRKGDHLTGAVRQPKEGE 388 Query: 109 R---YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLA 165 R + AL++++ VN PE+ R + F LTPL+ RLR+E G LT R++DL Sbjct: 389 RREKFNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGV---LTTRIIDLV 445 Query: 166 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG 225 +PIG+GQRGLIVAPPK GKTM++Q IA +I +N+P+C LMV+L+DERPEEVT+MQR VKG Sbjct: 446 APIGKGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKG 505 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 EV++STFD PA H VAE+ IE+AKRLVE DV++LLDSITRL RAYN PASG++L Sbjct: 506 EVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRIL 565 Query: 286 TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 +GGVD+ AL+ PKRFFGAARN+E+GGSLTI+ATAL+DTGS+MDEVI+EEFKGTGN EL L Sbjct: 566 SGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNAELKL 625 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 RK+A+KR+FPA+D + SGTRKEE+L +EL W LR+++H + + A+E L++K+ Sbjct: 626 DRKLADKRIFPAVDVDASGTRKEEILLGSDELAITWKLRRVLHALDQQQAIELLLDKMKQ 685 Query: 406 TKTNDDFFEMMKRS 419 TK+N +F ++++ Sbjct: 686 TKSNAEFLIQIQKT 699 >UniRef50_C9XS91 Transcription termination factor Rho n=16 Tax=Bacteria RepID=C9XS91_CLODC Length = 534 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 216/389 (55%), Positives = 286/389 (73%), Gaps = 6/389 (1%) Query: 29 MRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRR 88 M KQ I+ + S ED GVLEIL DGFGFLR S+YL+ D+YVSPSQIRR Sbjct: 150 MPKQVDESKIVDEFNTSKEDEVV-GVLEILPDGFGFLRG--SNYLSTEGDVYVSPSQIRR 206 Query: 89 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRME 148 FN++TGD I G R PK GE++ ALL V ++N + P+ A + FE LTP+ RL +E Sbjct: 207 FNMKTGDKIKGITRHPKSGEKFRALLYVQKINDENPDTAIQRNAFETLTPIFPEERLTLE 266 Query: 149 RGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 + R++DL SPIG+GQRGLIVAPPKAGKT+LL+++A SIA NHP+ L+VLL Sbjct: 267 TNRNE---IATRIIDLISPIGKGQRGLIVAPPKAGKTVLLKSVANSIAKNHPNVELIVLL 323 Query: 209 IDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 268 IDERPEEVT+M+ ++G+V+ STFD+ +S HV+VAEMV+ +A+RLVEH KDV+ILLDSIT Sbjct: 324 IDERPEEVTDMKESIEGDVIYSTFDQVSSHHVKVAEMVLNRAQRLVEHGKDVVILLDSIT 383 Query: 269 RLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMD 328 RLARAYN + +G+ L+GG+D ALH PK+FFGAARN+ +GGSLTI+ TAL++TGS+MD Sbjct: 384 RLARAYNLTISPTGRTLSGGIDPGALHGPKKFFGAARNIRQGGSLTILGTALVETGSRMD 443 Query: 329 EVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIH 388 +VI+EEFKGTGNMELHL RK+AEKR+FPAID +SGTR+++LL EE +W LR+ + Sbjct: 444 DVIFEEFKGTGNMELHLDRKLAEKRIFPAIDIYKSGTRRDDLLLDDEEKTALWRLRREMS 503 Query: 389 PMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 ++ + +I + TK N +F + +K Sbjct: 504 NNSVMEITDKVIELIKRTKDNKEFVKSIK 532 >UniRef50_B1R2H4 Transcription termination factor Rho n=3 Tax=Clostridiales RepID=B1R2H4_CLOBU Length = 511 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 214/390 (54%), Positives = 290/390 (74%), Gaps = 8/390 (2%) Query: 32 QDIIFAILKQHAKSGEDIFGDGVLEIL-QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN 90 Q+ +L++ G+LEIL + FGFLR +YL +DIYVSPSQIRRFN Sbjct: 124 QNEKKEVLREMINESN--SAKGILEILENNNFGFLRC--KNYLTSSEDIYVSPSQIRRFN 179 Query: 91 LRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERG 150 LRTGD + GKIR KE E++ ALL V +VN + PE A + FE LTP++ RL++E Sbjct: 180 LRTGDEVEGKIREAKESEKFKALLFVQKVNGEAPEKAIGRKSFETLTPIYPTERLKLETQ 239 Query: 151 NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 210 N DL++R++D+ P+G+GQRG+IVAPPKAGKT LL+ +AQ+I N+PD L+VLLID Sbjct: 240 NSG--DLSSRLMDIICPLGKGQRGVIVAPPKAGKTTLLKKVAQNIVKNYPDIKLIVLLID 297 Query: 211 ERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 270 ERPEEVT+M R + G+VV STFDE H +V++MV+E+AKR+VE KDV+IL+DSITRL Sbjct: 298 ERPEEVTDMIRSINGDVVYSTFDEEPQNHAKVSQMVLERAKRMVEQGKDVVILMDSITRL 357 Query: 271 ARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEV 330 +RAYN + +G+ L+GG+D AL PK+FFGAARN+EEGGSLTI+ATAL++TGS+MD++ Sbjct: 358 SRAYNLTITPTGRTLSGGLDPGALIMPKKFFGAARNIEEGGSLTILATALVETGSRMDDM 417 Query: 331 IYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390 I+EEFKGTGNME+HL R++ E+R+FPAID +SGTRKE+LL ++EEL+ + +RKI++ Sbjct: 418 IFEEFKGTGNMEVHLDRRLQERRIFPAIDVYKSGTRKEDLLLSKEELEVAFSIRKIMYKD 477 Query: 391 GEIDA-MEFLINKLAMTKTNDDFFEMMKRS 419 G D E LIN L+ TK N++F E K++ Sbjct: 478 GNADDVTENLINMLSKTKNNEEFIETFKKN 507 >UniRef50_B6WAG5 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WAG5_9FIRM Length = 449 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 199/450 (44%), Positives = 302/450 (67%), Gaps = 37/450 (8%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKS--------------- 45 +++T+L+ + +L +G+ + +++++ RK D+I I + K Sbjct: 3 IDITKLEGLKLDKLREIGKELSIKSVSSYRKNDLIEIIKNTYDKESLDDKNHSDEGYDQN 62 Query: 46 -----GEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK 100 GE +G+L++ +DGFGFLR+ Y + DDIYVSP Q++ F L+TGD I G Sbjct: 63 DNFDLGEKFNCEGLLDLHEDGFGFLRT--ELYESSNDDIYVSPKQVKMFRLKTGDFIKGI 120 Query: 101 IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR 160 R K+ +++ L+ V++VN K +A N+ FE+LTP++ N RL++E S ++++ R Sbjct: 121 ARVKKDKDKFSPLIFVSDVNGLKAADAFNRSNFESLTPIYPNQRLKLET---SKDNISQR 177 Query: 161 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ 220 ++D+ +PIGRGQRGLIV+ PKAGKT L+++I ++ N D ++VLLIDERPEEVT+ + Sbjct: 178 IIDIIAPIGRGQRGLIVSQPKAGKTTLIKDIEYALEKNFDDLKILVLLIDERPEEVTDFK 237 Query: 221 RLV-----------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 269 R V + EV ASTFD+ H+ + EMV+E+AKRLVE KDV+ILLDSITR Sbjct: 238 RFVNQYRDKDNELTRTEVAASTFDKAPQNHIYMQEMVLERAKRLVEDNKDVVILLDSITR 297 Query: 270 LARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDE 329 LARAYN + P SG+ L+GG+D AL PK+FFGAARN+E GGSLTIIATAL+DTGS+MD+ Sbjct: 298 LARAYNIMTPQSGRTLSGGLDPLALVGPKKFFGAARNIEGGGSLTIIATALVDTGSRMDD 357 Query: 330 VIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHP 389 ++YEEFKGTGNMELHL R +++KR+FPAID +S TRK+ LL +++E+ ++ +R Sbjct: 358 MVYEEFKGTGNMELHLDRNLSQKRIFPAIDIEKSSTRKDNLLLSEKEIDAVYKIRNS-SM 416 Query: 390 MGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419 + + + LIN + ++N++F +++ ++ Sbjct: 417 KDKSEFTKELINLMGKCQSNEEFVDIINKT 446 >UniRef50_P45835 Transcription termination factor rho n=20 Tax=Actinomycetales RepID=RHO_MYCLE Length = 610 Score = 459 bits (1182), Expect = e-128, Method: Composition-based stats. Identities = 205/373 (54%), Positives = 277/373 (74%), Gaps = 12/373 (3%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGE---- 108 G+L++L D + F+R+ S YLAGP D+YVS S +R+ LR GD ++G +R P+EGE Sbjct: 236 GILDVL-DNYAFVRT--SGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQGHQ 292 Query: 109 --RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAS 166 ++ L++++ +N E+A+ + F LTPL+ N RLR+E + + LT RV+DL Sbjct: 293 RQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET---TPDRLTTRVIDLIM 349 Query: 167 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE 226 PIG+GQR LIV+PPKAGKT +LQ+IA +I N+ +C LMV+L+DERPEEVT+MQR VKGE Sbjct: 350 PIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGE 409 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT 286 V+ASTFD P S H VAE+ IE+AKRLVE KDV++LLDSITRL RAYN PASG++L+ Sbjct: 410 VIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRILS 469 Query: 287 GGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 GGVD+ AL+ PKRF GAARN+EEGGSLTIIATA+++TGS D VI+EEFKGTGN EL L Sbjct: 470 GGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELKLD 529 Query: 347 RKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMT 406 RKIAE+RVFPA+D N SGTRK+ELL + +E + LR+++ + A++ L+++L T Sbjct: 530 RKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLRKT 589 Query: 407 KTNDDFFEMMKRS 419 KTN +F + ++ Sbjct: 590 KTNYEFLVQVSKT 602 >UniRef50_A7BDQ9 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDQ9_9ACTO Length = 616 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 211/383 (55%), Positives = 295/383 (77%), Gaps = 12/383 (3%) Query: 43 AKSGEDIFGD--GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK 100 A+ GED G+L+I Q+ F+R+ S YL GP+D+YV+ +RR+ LR GD ++G Sbjct: 236 ARGGEDNLAPIAGILDI-QENHAFVRT--SGYLPGPNDVYVTLGNVRRWGLRAGDAVAGA 292 Query: 101 IRPPKEGER----YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED 156 +R P+EGER Y AL++V+ VN E A+ + F LTP++ + +LRME S + Sbjct: 293 VRLPREGERQRQKYNALVRVDSVNGMTIEQAQARREFGKLTPVYPSEQLRMET---SPKA 349 Query: 157 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV 216 T RV+DL +P+G+GQRGLIV+PPKAGKTM++Q +A++I N+P+ LMV+L+DERPEEV Sbjct: 350 YTPRVIDLVAPVGKGQRGLIVSPPKAGKTMVIQQMAKAIELNNPEVHLMVVLVDERPEEV 409 Query: 217 TEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT 276 T+M+ +VKGEV+ASTFD PAS H VAE+ IE+AKRLVE +DV++LLDS+TRL+RAYN Sbjct: 410 TDMRSIVKGEVIASTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSLTRLSRAYNL 469 Query: 277 VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFK 336 PASG++L+GGVDA+AL+ PK+FFGAARN+ EGGSLTIIA+AL++TGSKMDEVI+EEFK Sbjct: 470 AAPASGRILSGGVDASALYPPKKFFGAARNISEGGSLTIIASALVETGSKMDEVIFEEFK 529 Query: 337 GTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 GTGNMEL LSR++AE+R+FPAID N SGTR+EELL EEL+ MW LR+++ + + + Sbjct: 530 GTGNMELRLSRQLAERRIFPAIDLNASGTRREELLFKPEELRIMWRLRRVLGTLDQQQGL 589 Query: 397 EFLINKLAMTKTNDDFFEMMKRS 419 E +++KL T++N +F +++++ Sbjct: 590 ELVLDKLKETQSNAEFLMLIQKT 612 >UniRef50_C2CU97 Transcription termination factor Rho n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CU97_GARVA Length = 695 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 203/378 (53%), Positives = 280/378 (74%), Gaps = 12/378 (3%) Query: 45 SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPP 104 E + G++++L + + F+R+ S YL GP+D+YVS SQI+++ LR GD + G IR P Sbjct: 307 KEELVPVAGIVDVL-ESYAFVRT--SGYLPGPNDVYVSMSQIKKYGLRKGDAVQGSIRAP 363 Query: 105 KEGER------YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLT 158 +EG+R + L V+ +N E+A+N+ F LTPL+ RL+ E + + Sbjct: 364 REGDRRNQRQKFVPLQSVDSINGMSVEDAQNRPQFAKLTPLYPQERLKQET---TPNRML 420 Query: 159 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE 218 R++DL +PIG+GQRGLIV+PPKAGKT+ LQNIA +IA N+P+ LMV+L+DERPEEVT+ Sbjct: 421 GRIIDLVAPIGKGQRGLIVSPPKAGKTITLQNIANAIAVNNPEVHLMVVLVDERPEEVTD 480 Query: 219 MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVV 278 M+R V+GEV++STFD PAS H VAE+ IE+AKRLVE +DV++LLDS+TRLARAYN Sbjct: 481 MERTVQGEVISSTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAA 540 Query: 279 PASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGT 338 PASG++L+GGVDA AL+ PK+FFGAARN+E GGSLTII++AL++TGSKMDEVI+EEFKGT Sbjct: 541 PASGRILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGT 600 Query: 339 GNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEF 398 GNMEL LSR +A+KR+FPA+D N SGTR+EEL+T +EL ++ LR++ + A + Sbjct: 601 GNMELRLSRDLADKRLFPAVDINSSGTRREELITPAQELPIIYRLRRLFGGLEPEQAYQT 660 Query: 399 LINKLAMTKTNDDFFEMM 416 L+ +L T +N DF + Sbjct: 661 LVPRLKKTASNRDFLAAI 678 >UniRef50_C5RGE3 Transcription termination factor Rho n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGE3_CLOCL Length = 483 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 203/369 (55%), Positives = 273/369 (73%), Gaps = 7/369 (1%) Query: 51 GDGVLEILQ-DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER 109 GVLEI + + FGFLR+ ++++ +DIYVSPSQIRRFNLRTGD + GK+R PKEGE+ Sbjct: 117 AKGVLEINESNNFGFLRAG--NFVSTSEDIYVSPSQIRRFNLRTGDEVEGKVREPKEGEK 174 Query: 110 YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIG 169 + AL V +VN + PE A +I FE L P++ +RL++E + L+ R++D PIG Sbjct: 175 FKALRFVEKVNGENPEKAIGRIPFEKLIPIYPENRLKLETKSSE---LSTRLMDFICPIG 231 Query: 170 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVA 229 +GQRGLIVAPPKAGKT LL+N+A SI NHP+ L+V+LIDERPEEVTEMQR +KGEVV Sbjct: 232 KGQRGLIVAPPKAGKTTLLKNVANSITENHPEVKLIVVLIDERPEEVTEMQRSIKGEVVY 291 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGV 289 STFD+ H+++A MV+E+AKR+VE K DV+ILLDS+TRL RA N V +G+ L+GG+ Sbjct: 292 STFDQETESHIRIANMVLERAKRMVEQKLDVVILLDSLTRLTRANNLRVDPTGRTLSGGL 351 Query: 290 DANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 349 D ALH PKR FGAARNVE GGSLTI++T L++TGS+MD+VI+EEFKGTGNME+HL RK+ Sbjct: 352 DPAALHLPKRLFGAARNVENGGSLTILSTVLVETGSRMDDVIFEEFKGTGNMEVHLDRKL 411 Query: 350 AEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKII-HPMGEIDAMEFLINKLAMTKT 408 E+R+FPAID +SGTRKEE L + +E +R+ + + E ++N L+ T++ Sbjct: 412 QERRIFPAIDIYKSGTRKEEYLLSTDERNAAINVRRKLYNENNPQAVTEMVLNILSETES 471 Query: 409 NDDFFEMMK 417 ND+ + + Sbjct: 472 NDELIKRLN 480 >UniRef50_B8DWV6 Transcription termination factor Rho n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=B8DWV6_BIFA0 Length = 676 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 205/377 (54%), Positives = 281/377 (74%), Gaps = 12/377 (3%) Query: 46 GEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPK 105 + + G++++L D + F+R+ S YL GP+DIYVS QI+++ LR GD + G R P Sbjct: 292 EDLVEVGGIVDVL-DSYAFIRT--SGYLPGPNDIYVSMGQIKKYGLRKGDAVRGYTRAPH 348 Query: 106 EGER------YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA 159 EGER + L + +N E A+++ F LTPL+ + RLRME + + Sbjct: 349 EGERRNQRQKFMPLQSITLINGLSVEEAQDRPNFSKLTPLYPDERLRMET---TPNRIIG 405 Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R++D+ SPIG+GQRGLIV+PPKAGKT+ LQNIA +IA N+P+ LMV+L+DERPEEVT+M Sbjct: 406 RLIDIVSPIGKGQRGLIVSPPKAGKTITLQNIANAIAVNNPEVHLMVVLVDERPEEVTDM 465 Query: 220 QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVP 279 +R VKGE+++STFD PAS H VAE+ IE+AKRLVE +DV++LLDS+TRLARAYN P Sbjct: 466 ERTVKGEIISSTFDRPASDHTIVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAP 525 Query: 280 ASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTG 339 ASG++L+GGVDA AL+ PK+FFGAARN+E GGSLTII++AL++TGSKMDEVI+EEFKGTG Sbjct: 526 ASGRILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTG 585 Query: 340 NMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 NMEL LSR++A+KR+FPA+D N SGTR+EEL+T +EL ++ LR+++ + A + L Sbjct: 586 NMELRLSRELADKRLFPAVDINASGTRREELITNPQELPVLYSLRRLLGGLEPEQAYQTL 645 Query: 400 INKLAMTKTNDDFFEMM 416 + +L T TN DFF+ + Sbjct: 646 VPRLKKTMTNADFFKAI 662 >UniRef50_C4GAL5 Putative uncharacterized protein n=2 Tax=Bacteria RepID=C4GAL5_9FIRM Length = 679 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 205/395 (51%), Positives = 284/395 (71%), Gaps = 9/395 (2%) Query: 28 RMRKQDIIFAILKQHAKSGEDIF-GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQI 86 R ++++ A+ Q A+ D DG+LEI+ DG+GFL + ++L G DD YV+PSQI Sbjct: 286 RPHREEVSDAVSPQLAEQMSDASEADGILEIMPDGYGFLHT--DNFLTGEDDAYVAPSQI 343 Query: 87 RRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLR 146 RRF ++TGD + G + +++ ALL++N +N PE R + FENLTP+ RLR Sbjct: 344 RRFAMKTGDRVEGLKKRNNPTDKFAALLRINSINGRNPEELRGRQSFENLTPIFPRERLR 403 Query: 147 MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV 206 +ER S + +RV+DL +PIG+GQRGLIV+PPKAGKT LL+ +A+S+ NHP+ +M+ Sbjct: 404 LERKGSS---VASRVIDLIAPIGKGQRGLIVSPPKAGKTTLLKEVAKSVQENHPEMHMMI 460 Query: 207 LLIDERPEEVTEMQRLVKG---EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 LLIDERPEEVT+M+ + G E++ STFD+ H +V+EMVIE+AKRLVE +DVIIL Sbjct: 461 LLIDERPEEVTDMKETIVGDNVEIIYSTFDQMPDHHTKVSEMVIERAKRLVEQGEDVIIL 520 Query: 264 LDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDT 323 LDSITRLARAYN V +SG++L+GG+D AL+ PKRFFGAARN+ EGGSLT++ATAL+DT Sbjct: 521 LDSITRLARAYNLTVTSSGRILSGGLDTAALYMPKRFFGAARNMREGGSLTVLATALVDT 580 Query: 324 GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWIL 383 GS+MD+V+YEEFKGTGNMEL L R+++E+R+FPA+D SGTR+E+LL +E++ I+ Sbjct: 581 GSRMDDVVYEEFKGTGNMELILDRRLSERRIFPAVDIVASGTRREDLLLDADEMEAARIM 640 Query: 384 RKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 + I+ + E L+N A TK N DF + R Sbjct: 641 HRGINGRRAEENTEDLLNMFAHTKDNKDFIRQLLR 675 >UniRef50_B2UR37 Transcription termination factor Rho n=2 Tax=Verrucomicrobiaceae RepID=B2UR37_AKKM8 Length = 474 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 183/415 (44%), Positives = 273/415 (65%), Gaps = 3/415 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +++ EL+ P+++L + E + + N A + K ++F + KQ G ++ GV+E +D Sbjct: 60 IDINELRKRPLNDLQEMAEGLPIRNAASLTKSQLVFELGKQLLAKGHEVVVSGVMEQAKD 119 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 + LR S+ PDDIY+ + I+ +LR G I ++R + ++Y + V V Sbjct: 120 NYAMLRDPVKSFRTSPDDIYLGGNLIKPLHLRVGQQIKVRLRKLRPHDKYLSAASVISVE 179 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 E+ R + FE LTPL RL +E N RVLDL +P G+GQRGLIVAPP Sbjct: 180 DIPAEDYRARSDFERLTPLFPKERLLLE--NKGVNSAAMRVLDLMTPFGKGQRGLIVAPP 237 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+LL+ IA+SI N+P+ L+VLL+DERPEEVT+ + V V ASTFDEP+ RH Sbjct: 238 RGGKTVLLKTIARSIRANYPEVELIVLLLDERPEEVTDFEETVDAPVFASTFDEPSRRHA 297 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 QV+++VIE+AKRLVE +DV+ILLDS+TRLAR YN G++++GG+ +NAL +P++F Sbjct: 298 QVSDLVIERAKRLVEMGRDVVILLDSLTRLARGYN-ANQTGGRIMSGGLGSNALEKPRKF 356 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 F AARNVEEGGSLTIIAT L+DT S+MDEVI+EEFKGTGN+E+ L R+++E+R++PAI Sbjct: 357 FSAARNVEEGGSLTIIATCLVDTESRMDEVIFEEFKGTGNLEIRLDRELSERRIYPAISL 416 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEM 415 ++SGTR ++ L ++E K+ LR+ + + ++ L+ ++ T+ N + Sbjct: 417 SQSGTRNDDRLYNEQEFVKIMQLRRQLAMKPGWEGLQTLLQNISKTQNNAELLLT 471 >UniRef50_C4G1L0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1L0_ABIDE Length = 597 Score = 443 bits (1139), Expect = e-123, Method: Composition-based stats. Identities = 192/372 (51%), Positives = 266/372 (71%), Gaps = 7/372 (1%) Query: 50 FGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER 109 G+LE++ +GFGF+R +YL G +D+YVSP+ IRRFNL+TGD I G R E+ Sbjct: 221 TKTGILEVMPEGFGFIRC--DNYLPGENDVYVSPAHIRRFNLKTGDIIVGNTRVKSNTEK 278 Query: 110 YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIG 169 + A+L + VN + + + FE+LTP+ N R+R+E ++ R++DL +PIG Sbjct: 279 FAAILYIRTVNGKYIKESLERPKFEDLTPIFPNRRIRLETP--GENVISMRMVDLIAPIG 336 Query: 170 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE--- 226 +GQRG++V+ PKAGKT LL+ IA++I N+P+ L++LLIDERPEEVT+M+ + GE Sbjct: 337 KGQRGMLVSQPKAGKTTLLKQIARAITENNPEMHLIILLIDERPEEVTDMKDSIMGEKVE 396 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT 286 ++ STFDE H +V+EMVIE+AKRLVE+KKDVIILLDSITRLARAYN V SG+ L+ Sbjct: 397 IIYSTFDEAPENHKRVSEMVIERAKRLVEYKKDVIILLDSITRLARAYNLTVSPSGRTLS 456 Query: 287 GGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 GG+D ALH PKRFFGAARN+ EGGSLTI+ATAL+DTGS+MD+V++EEFKGTGNMEL L Sbjct: 457 GGLDPAALHMPKRFFGAARNMREGGSLTILATALVDTGSRMDDVVFEEFKGTGNMELVLD 516 Query: 347 RKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMT 406 R ++EKR+FPAID +SGTR+++LL TQ E I+++ + D +E +I Sbjct: 517 RSLSEKRIFPAIDLAKSGTRRDDLLFTQSEADANDIIKRTLSARNVEDGVENIIKIFKTF 576 Query: 407 KTNDDFFEMMKR 418 +TN++ + + Sbjct: 577 ETNEEAVSYINK 588 >UniRef50_C7M177 Transcription termination factor Rho n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M177_ACIFD Length = 594 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 207/378 (54%), Positives = 277/378 (73%), Gaps = 7/378 (1%) Query: 46 GEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPK 105 E I GVL++ +G+GFLR+ + L D YV S +R+F LR GD I G+ R Sbjct: 217 QELIEAVGVLDLRDEGYGFLRA--NGRLTSSRDTYVPASLVRKFGLRKGDQIVGQARASS 274 Query: 106 EGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLA 165 + E++ AL++V V E+AR + FE+LTPL + RL +E +LT R++DL Sbjct: 275 QNEKFPALVRVERVFDMTVEDARRRPRFEDLTPLFPDERLVLENAE-DPLELTTRIMDLV 333 Query: 166 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG 225 +PIG+GQRGLIV+PPKAGKT +++ IA +I N+P+ VL VLL+DERPEEVT+++R VKG Sbjct: 334 APIGKGQRGLIVSPPKAGKTTVMKQIAHAIERNNPEVVLFVLLVDERPEEVTDIRRSVKG 393 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 EV+ASTFD PA H QVAE+VIE+AKRLVE DV+I+LD ITRLARAYN PASG+++ Sbjct: 394 EVIASTFDRPAEEHTQVAELVIERAKRLVELGHDVVIILDGITRLARAYNLAQPASGRIM 453 Query: 286 TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 +GGVD+ AL+ PK+FFGAARNVEEGGSLTI+ATAL++TGSKMDEVI+EEFKGTGNMEL L Sbjct: 454 SGGVDSGALYPPKKFFGAARNVEEGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRL 513 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMG----EIDAMEFLIN 401 R++AE+R+FPAID N S TR EELL T++EL ++W LR+++ + +E LI+ Sbjct: 514 DRRLAERRLFPAIDVNASSTRHEELLFTRDELAQVWKLRRVLGAISQEGTPAAGLELLID 573 Query: 402 KLAMTKTNDDFFEMMKRS 419 K+ T++N +F + RS Sbjct: 574 KIRSTRSNAEFLAEIARS 591 >UniRef50_A5TX87 Transcription termination factor Rho n=11 Tax=Bacteria RepID=A5TX87_FUSNP Length = 413 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 179/415 (43%), Positives = 269/415 (64%), Gaps = 11/415 (2%) Query: 6 LKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFL 65 L + +L + + M +E +K ++ ++ + G+L+ +GFGFL Sbjct: 4 LNKLLLKDLQEIAKVMEIEVSVGQKKDELK-KLISHSLEENNTELAYGILDTAPEGFGFL 62 Query: 66 RSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPE 125 + +IY+S SQI+RF LR GD + G++R P E+ FA+ +V + N + Sbjct: 63 KETTLG-----KNIYMSASQIKRFKLRRGDQVLGEVRKPIGEEKNFAIRRVLKANDNDLA 117 Query: 126 NARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKT 185 ++I +E L P + + ++ ++++ R+LDL SPIG+GQR LI+APPKAGKT Sbjct: 118 ALESRIPYEELIPTYPTEQFKL---GIEQDNISGRILDLISPIGKGQRALIIAPPKAGKT 174 Query: 186 MLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-EVVASTFDEPASRHVQVAE 244 + +IA ++ D + +LLIDERPEEVT+++ V+G V ASTFD+ H++V E Sbjct: 175 TFISSIANALIEGQKDSEVWILLIDERPEEVTDIKENVEGATVFASTFDDDPKNHIKVTE 234 Query: 245 MVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAA 304 +IEKAK VE ++V+ILLDS+TRLARAYN V+P+SGK+L+GG+D AL+ PK FFGAA Sbjct: 235 EIIEKAKMKVEDGENVVILLDSLTRLARAYNIVMPSSGKLLSGGIDPTALYHPKNFFGAA 294 Query: 305 RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 RN++ GGSLTIIAT L+DTGSKMDEVIYEEFK TGN +++L R++AE R+FPAID +SG Sbjct: 295 RNIKNGGSLTIIATILVDTGSKMDEVIYEEFKSTGNCDIYLDRQLAEFRIFPAIDITKSG 354 Query: 365 TRKEELLTTQEELQKMWILRKIIHPM-GEIDAMEFLINKLAMTKTNDDFFEMMKR 418 TRKEELL + ++ ++W LR++++ ++ A LI + T+ ND+ + + Sbjct: 355 TRKEELLLDKNQIDEIWNLRRLLNDYDNKVSATSALIKAIKTTRDNDELLAQLPK 409 >UniRef50_C2KVL4 Transcription termination factor Rho n=1 Tax=Oribacterium sinus F0268 RepID=C2KVL4_9FIRM Length = 564 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 196/386 (50%), Positives = 262/386 (67%), Gaps = 7/386 (1%) Query: 36 FAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGD 95 + ++ + + G+LE++ DG+GF+RS +++ G D+YV+ IRRF+L+TGD Sbjct: 159 EEVRREGPRDTDAKEAHGILEVMADGYGFIRS--ENFMPGEQDVYVNSLMIRRFHLKTGD 216 Query: 96 TISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTE 155 I G + ERY ALL + VN + F+ LTP+ + R+ MER G Sbjct: 217 MIYGYAKSRNPQERYNALLYIETVNDLPVSAIFRRPDFDKLTPIFPDERIHMERE-GKRV 275 Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 + RVLDL +PIG+GQRG+IV+PPKAGKT LL+ IAQSI N PD LM+LLIDERPEE Sbjct: 276 PTSLRVLDLLAPIGKGQRGMIVSPPKAGKTTLLKQIAQSILKNQPDMTLMILLIDERPEE 335 Query: 216 VTEMQRLVKG---EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 VT+M V G +V+ STFDE H +VAEM IE+ KRLVE +DV ILLDSITRLAR Sbjct: 336 VTDMMEEVVGDKVQVIYSTFDELPEHHKRVAEMTIERGKRLVEQGQDVCILLDSITRLAR 395 Query: 273 AYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIY 332 AYN +VP+SGKVL+GG+D+ ALH PKRFFGAARN+ EGGSLTI+ATAL+DTGS+MD+VIY Sbjct: 396 AYNLIVPSSGKVLSGGMDSAALHMPKRFFGAARNIREGGSLTILATALVDTGSRMDDVIY 455 Query: 333 EEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE 392 EEFKGTGNMEL L+R++ E+R+FPAID +SGTR+++LL + E ++ + + + Sbjct: 456 EEFKGTGNMELVLNRELQERRIFPAIDILKSGTRRDDLLLSPLEKDAADLIHRELATEKK 515 Query: 393 IDAMEFLINKLAMTKTNDDFFEMMKR 418 +E ++ T N E + R Sbjct: 516 T-VVEETLSLFDRTVNNISLCETLVR 540 >UniRef50_D2QWP2 Transcription termination factor Rho n=3 Tax=Planctomycetaceae RepID=D2QWP2_9PLAN Length = 488 Score = 413 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 173/369 (46%), Positives = 253/369 (68%), Gaps = 4/369 (1%) Query: 51 GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERY 110 G G+LE+ +G+GFLRS D++Y D +V + I +++LR G I G+++P + G + Sbjct: 121 GYGLLEMHPNGYGFLRSPDNNYSRERSDPFVPGTMIEKYSLRQGVMIRGQVQPGR-GHQG 179 Query: 111 FALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGR 170 L +V +V P++ F+ LTP++ + R+E G + L+ RV+DL +P+GR Sbjct: 180 PRLREVTDVEGMPPDDYIKVKAFDQLTPINPDRWFRLETG---PQPLSTRVMDLLTPLGR 236 Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAS 230 GQR LIVAPP++GKT+L+Q I+ +A N+PD +LLIDERPEEVT+M+R VKGEV AS Sbjct: 237 GQRALIVAPPRSGKTILMQQISAGVAANYPDVKQFILLIDERPEEVTDMRRNVKGEVCAS 296 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVD 290 + D HV++++++IE+ KR+ E +DV +LLDSITRLARA+N V G ++GG++ Sbjct: 297 SLDNDIESHVRLSQLIIERCKRMAEMGQDVFLLLDSITRLARAFNKYVGDKGGTMSGGLN 356 Query: 291 ANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA 350 A+ PK+ F AR EEGGSLTI+ TALI+T S+MD+ I++EFKGTGNMEL L RK+A Sbjct: 357 IKAMDIPKKLFATARAFEEGGSLTIVGTALIETNSRMDDAIFQEFKGTGNMELVLDRKLA 416 Query: 351 EKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 E+RV+PAID +SGTR+EELL E L + +LR+ + M +DAME L +L KTN Sbjct: 417 ERRVWPAIDVTQSGTRREELLLEPEALHAVTMLRRTLSSMHPVDAMEQLTKQLGRFKTNA 476 Query: 411 DFFEMMKRS 419 +F +++ + Sbjct: 477 EFIKLISSA 485 >UniRef50_A6CBM4 Transcription termination factor Rho n=3 Tax=Planctomycetaceae RepID=A6CBM4_9PLAN Length = 543 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 168/366 (45%), Positives = 249/366 (68%), Gaps = 4/366 (1%) Query: 52 DGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYF 111 +GVLE+ +GF+R S+Y A D +VS S I + NLR G I G++ P G+ Sbjct: 179 EGVLELHPKAYGFIRDPKSNYKAQDSDAFVSSSLIEKHNLREGILIRGEVGPGTRGQ-GP 237 Query: 112 ALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG 171 L + ++ E F+ LTP++ ++++E G +T R++D+ +PIG+G Sbjct: 238 RLKSIETIDGRTVEEYMQIKSFDELTPINPFEQIKLETG---PMPITMRIMDMLTPIGKG 294 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAST 231 QR L+VAPP+ GKTMLLQ+IA++++ NHP+ LMVLLIDERPEEVTEMQR +KGEV++S+ Sbjct: 295 QRALVVAPPRTGKTMLLQDIAEAVSTNHPEIRLMVLLIDERPEEVTEMQRSIKGEVISSS 354 Query: 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDA 291 D HV+ ++++ E+ KRL E +D ILLDSITR ARA+N V +G+ ++GG+D Sbjct: 355 MDRDVESHVRTSQLIFERGKRLAEAGEDAFILLDSITRTARAFNKWVGNTGRTMSGGLDV 414 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 A+ PK+ FG AR +EGGSLT++ TALIDTGS+MDEVI++EFKGTGNME+ LSR++++ Sbjct: 415 KAMDIPKKMFGTARRFDEGGSLTVLGTALIDTGSRMDEVIFQEFKGTGNMEMVLSRELSD 474 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 411 +R+FPAID SGTR+EE + E L+ + +LR+ + + ++AME L + L +N + Sbjct: 475 RRIFPAIDITLSGTRREEKILAPEVLEGVTMLRRSLISLNPVEAMEQLSSTLKKFPSNKE 534 Query: 412 FFEMMK 417 F E ++ Sbjct: 535 FLEKIR 540 >UniRef50_B1ZX59 H+transporting two-sector ATPase alpha/beta subunit central region n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZX59_OPITP Length = 412 Score = 409 bits (1052), Expect = e-113, Method: Composition-based stats. Identities = 168/374 (44%), Positives = 237/374 (63%), Gaps = 6/374 (1%) Query: 47 EDIFGDGVLEI--LQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPP 104 E I +GVL+I + G G L P D +V IRRF L+ G I G PP Sbjct: 43 ETIQVEGVLDIDLQRGGNGQLIDISRGGKRRPTDPFVPKELIRRFKLKQGSMIGGTAFPP 102 Query: 105 KEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDL 164 + + V+ E R K F LT + N L+ME +G +T R +DL Sbjct: 103 DGRFPNPKMRFIETVDGIPLEERRGKFEFTTLTTISPNQHLKMEMKDGR---MTTRAVDL 159 Query: 165 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK 224 PIG+G RGLIVAPP+ GKT LL+++A + N+P+C +M+LL+DERPEEVT+ +R V Sbjct: 160 FCPIGKGTRGLIVAPPRTGKTTLLRDMALGVLENNPECFVMILLVDERPEEVTDFKRSVP 219 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 EV AS+ DE H+++A++ IE+AKRLVE +DV++ LDSITRLARA+N SG+ Sbjct: 220 AEVWASSNDEQIENHLRIADLCIERAKRLVEVGRDVVLFLDSITRLARAHN-TARNSGRT 278 Query: 285 LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELH 344 +GG+D AL +P++ F +AR EE GSLTIIA+ L++TGS+MD+VI++EFKGTGNMEL Sbjct: 279 GSGGLDVRALEKPRQLFASARKTEEAGSLTIIASVLVETGSRMDDVIFQEFKGTGNMELV 338 Query: 345 LSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 L RK AE R++PAI+ SGTRKEELL + L+ + R+ + ++ E +I +L+ Sbjct: 339 LDRKCAEMRLWPAINVAASGTRKEELLIDAKTLEGIHFFRRALVQQKIEESTETMIARLS 398 Query: 405 MTKTNDDFFEMMKR 418 TKTN +F ++++R Sbjct: 399 KTKTNAEFLKLIQR 412 >UniRef50_C1A5H8 Transcription termination factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5H8_GEMAT Length = 737 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 174/369 (47%), Positives = 249/369 (67%), Gaps = 8/369 (2%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFA 112 G + +DG GFLR ++SYL P D ++ P+ +R LR GD + + ++ + Sbjct: 372 GWFDPSRDG-GFLRRPENSYLPDPTDPFMPPALVRLHQLRRGDRLE--VTYGRDHRGRYL 428 Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGST--EDLTARVLDLASPIGR 170 +++V +N P + F L + + +L +E G + +LT R +DL +PIG Sbjct: 429 VIEVQTLNDGSPVVLEKRPDFNTLVASYPDRKLTLETGRPAKTGPELTRRAIDLIAPIGY 488 Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAS 230 GQR LIVAP +AGKT LLQ I + ++ NHP+ VL+VLL+DERPEEV+EM GEVVAS Sbjct: 489 GQRALIVAPARAGKTTLLQAIVEGVSINHPEAVLLVLLVDERPEEVSEMITWGYGEVVAS 548 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVD 290 +FD P RHV+VAEM +E+A+RLVE KDV+I+LDSITRLARA+NTV +G+ ++GG+D Sbjct: 549 SFDMPPKRHVEVAEMTLERARRLVEQGKDVVIVLDSITRLARAHNTVDRGTGRTMSGGLD 608 Query: 291 ANALHRPKRFFGAARNV---EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSR 347 A A+ +PK FFG+AR + GGSLTIIATAL++TGS+MD+VI+EEFKGTGN E+ L R Sbjct: 609 ATAMQKPKAFFGSARMIAPQHGGGSLTIIATALVETGSRMDDVIFEEFKGTGNCEIKLDR 668 Query: 348 KIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK 407 +A++R+FPA D SGTR+EE L ++L+K+ +LR+ +H + ME+LI ++A T Sbjct: 669 SLADRRIFPAFDIATSGTRREEKLYRPDQLEKVHLLRRGLHQLPPQAGMEWLIKRIAATT 728 Query: 408 TNDDFFEMM 416 ND + + Sbjct: 729 NNDSLLDGL 737 >UniRef50_C0ACT9 H+transporting two-sector ATPase alpha/beta subunit central region n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ACT9_9BACT Length = 416 Score = 403 bits (1035), Expect = e-111, Method: Composition-based stats. Identities = 165/370 (44%), Positives = 242/370 (65%), Gaps = 6/370 (1%) Query: 51 GDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGE 108 GV++I + G G L P D +V IRRF +R G ++G +PP+ Sbjct: 51 VSGVIDIDTGKGGNGQLLDLARYGKRRPTDAFVPKELIRRFKIRQGSFVTGTAQPPEGRF 110 Query: 109 RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPI 168 + + V+ E R KI F LT + + +L+ME +G LT R +DL P+ Sbjct: 111 PNPKMKFIESVDGLTIEERRAKIEFTQLTTISPDQQLKMETKDGR---LTTRAVDLFCPV 167 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVV 228 G+G RGLIVAPP+ GKT LL+++A + NHP+C +M+LL+DERPEEVT+ +R V EV Sbjct: 168 GKGTRGLIVAPPRTGKTTLLRDMALGVLENHPECHVMILLVDERPEEVTDFKRSVPAEVW 227 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGG 288 AS+ DE H+++A++ IE+A+RLVE KDV++ LDS+TRLARA+N SG+ +GG Sbjct: 228 ASSNDENVESHIRIADLCIERARRLVEAGKDVVLFLDSLTRLARAHN-TQRNSGRTGSGG 286 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 +D AL +P++ F +ARN E+GGSLTI+A+ LI+TGS+MD+VI++EFKGTGNMEL L RK Sbjct: 287 LDVRALEKPRQLFASARNTEDGGSLTIVASILIETGSRMDDVIFQEFKGTGNMELVLDRK 346 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKT 408 AE R++PA++ SGTRKEELL + ++L + R+ + +A E +I +L+ TKT Sbjct: 347 CAEMRLWPAMNVASSGTRKEELLISADKLDGIHFFRRALVSQRIEEATETMIARLSKTKT 406 Query: 409 NDDFFEMMKR 418 N++F +++ R Sbjct: 407 NEEFLKLIAR 416 >UniRef50_Q1D9H4 Transcription termination factor Rho n=5 Tax=Myxococcaceae RepID=Q1D9H4_MYXXD Length = 566 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 187/369 (50%), Positives = 256/369 (69%), Gaps = 11/369 (2%) Query: 51 GDGVLEILQDG-FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISG--KIRPPKEG 107 +GVL+ G FLR + LA PDD + + +++ LR G I+ ++R K Sbjct: 206 VEGVLDTEAKGPNAFLRQLKRNLLAAPDDPELPKNLVQKLRLRQGQYITAFAQMRGHKG- 264 Query: 108 ERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASP 167 + KV+ V+ E A F +LT + RL++E G+ +++ RVLDL SP Sbjct: 265 ----VIQKVDTVDGRPLEGAPRLPHFADLTSVDPTERLKLENGH---KEMVTRVLDLISP 317 Query: 168 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEV 227 IG+GQR LIVAPPK GKT++LQ IAQ+I NHP+C +MV+LIDERPEEVT+M+R +K EV Sbjct: 318 IGKGQRALIVAPPKTGKTIMLQRIAQAILSNHPECHVMVVLIDERPEEVTDMRRGIKAEV 377 Query: 228 VASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG 287 +AS+ D P + H++VAE+ +E+A+RLVE KDV++LLDSITRLARA+N V SG+ +TG Sbjct: 378 LASSSDRPTADHLKVAELALERARRLVESGKDVVVLLDSITRLARAFNKEVDNSGRTMTG 437 Query: 288 GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSR 347 GVD+ AL RPKR FGAAR EE G+LTII TALIDTGS+MDEVI+EEFKGTGN E+ L R Sbjct: 438 GVDSRALERPKRLFGAARATEEAGTLTIIGTALIDTGSRMDEVIFEEFKGTGNSEVTLDR 497 Query: 348 KIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK 407 +AEKRVFPA++ +SGTRKEE L T E +K+ LR+++ + ++AME L+ +L+ Sbjct: 498 LLAEKRVFPAVNIAQSGTRKEEKLFTLREYEKVKKLRQMLFSVKPVEAMEALVKRLSRYT 557 Query: 408 TNDDFFEMM 416 ND+F + + Sbjct: 558 YNDEFLDEL 566 >UniRef50_B4CU50 Transcription termination factor Rho n=3 Tax=Verrucomicrobia RepID=B4CU50_9BACT Length = 592 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 173/375 (46%), Positives = 244/375 (65%), Gaps = 7/375 (1%) Query: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103 + E +G++E+ GFGFLR + P D++V+P R +NLR G + G+ R Sbjct: 223 REDEIGEAEGIVEVSGKGFGFLRDPKRGFAQHPADVFVTPELCRAYNLRDGQWVKGQTR- 281 Query: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163 +G R L K+ +N D + + + F+ LT + +R+E E T RV+D Sbjct: 282 --KGNRGPQLFKIQTINGDDADKSAHLPSFDELTVISPEKFIRLET---VPERFTTRVVD 336 Query: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223 L PIGRGQRGLIVAPP+ GKT LLQ+IA+++ NHPD L++LL+DERPEEVTEM+R + Sbjct: 337 LMCPIGRGQRGLIVAPPRTGKTTLLQHIAEAVVKNHPDIKLIILLVDERPEEVTEMKRTL 396 Query: 224 KG-EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282 EV+AS+ D H ++A++ IE+AKRLVE KDV ILLDSITR+ RA+N G Sbjct: 397 PTAEVMASSNDSDVKSHTRIAQLAIERAKRLVESGKDVFILLDSITRVGRAFNNATGGGG 456 Query: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 + +GG+D AL P+R F AARN EE GSLTIIATALI+TGS MD+ I++EFKGTGNME Sbjct: 457 RTGSGGLDNRALEIPRRIFAAARNTEEAGSLTIIATALIETGSLMDDRIFQEFKGTGNME 516 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 L L RKI+++R++PA+D +SGTR+EELL ++ +L K+ ++R+ + I+A+E L+ Sbjct: 517 LVLDRKISDQRIYPAVDIFQSGTRREELLLSETDLHKIAVIRRGLAGHKPIEAIERLLFF 576 Query: 403 LAMTKTNDDFFEMMK 417 + TN + Sbjct: 577 VKKFPTNAQMLAGIP 591 >UniRef50_B2UQ10 Transcription termination factor Rho n=2 Tax=Bacteria RepID=B2UQ10_AKKM8 Length = 659 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 177/370 (47%), Positives = 241/370 (65%), Gaps = 8/370 (2%) Query: 51 GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERY 110 DG+LEI GFGFLR D+ + A + +YV IRRF LR + G+ +R Sbjct: 294 VDGLLEITNKGFGFLRKPDNDFDAFAEAVYVPQDMIRRFGLRPAVWVHGQA---CRHDRG 350 Query: 111 FALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGR 170 L ++ VN PE AR FE L ++ N R+ E E T R LDL +PIGR Sbjct: 351 ILLTEIASVNGVAPERARKNPHFEELKAVNPNKRISFET---RPERYTTRTLDLIAPIGR 407 Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD-CVLMVLLIDERPEEVTEMQRLVKG-EVV 228 GQRGLIV+PP+AGKT LLQ++A++I N+ D LMVLL+DERPEEVTE +R + G EV Sbjct: 408 GQRGLIVSPPRAGKTTLLQHMAEAILENYRDSIHLMVLLVDERPEEVTEFKRSLPGAEVY 467 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGG 288 AS+ D H ++AE+ IE+AKRLVE + V +L+DSITRLARAYN SG+ ++GG Sbjct: 468 ASSNDGRVRDHCRMAELCIERAKRLVEAGQHVFLLMDSITRLARAYNNADKGSGRTMSGG 527 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 +DA AL P+R F AARN + GSLTIIATAL++T S+MD++I++EFKGTGNMEL L+R+ Sbjct: 528 IDARALEMPRRLFAAARNTRQAGSLTIIATALVETNSRMDDLIFQEFKGTGNMELVLNRR 587 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKT 408 IAE+ +FPA+D +SGTR+EEL+ + L KM ++R+ + ++AME + L + Sbjct: 588 IAEQYIFPAVDILKSGTRREELIMPEAWLYKMNLIRRALAGHKPVEAMERFLFFLNKYPS 647 Query: 409 NDDFFEMMKR 418 N +K+ Sbjct: 648 NTQMLLDLKQ 657 >UniRef50_Q9FC33 Putative transcription terminator factor n=2 Tax=Streptomyces RepID=Q9FC33_STRCO Length = 415 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 184/370 (49%), Positives = 243/370 (65%), Gaps = 12/370 (3%) Query: 50 FGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER 109 GVL+I G G LR + P D +SP+ IRR LR GD + G G+R Sbjct: 54 IASGVLDIETGGKGRLRG--RNLQPEPADPALSPALIRRHGLRRGDLVEGVC-----GDR 106 Query: 110 YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIG 169 L V VN P + R++ F +LTPLH + RLR+E L RV+DL +P+G Sbjct: 107 R-TLTDVVRVNGRTP-DRRSRPHFADLTPLHPHERLRLEHPAAG---LAGRVVDLLAPVG 161 Query: 170 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVA 229 +GQRGLIVAPPK GKT+LLQ A ++A NHP+ LMV+L+DERPEEVT+M+R V+GEV + Sbjct: 162 KGQRGLIVAPPKTGKTVLLQQFAAAVAGNHPEARLMVVLLDERPEEVTDMRRSVRGEVYS 221 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGV 289 STFD A +H+ +AE+VIE+AKRLVE +DV+ILLDS+TRL RA+N + G+ L+GGV Sbjct: 222 STFDRSARQHIALAELVIERAKRLVEAGEDVVILLDSLTRLCRAHNNAASSGGRTLSGGV 281 Query: 290 DANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 349 DA AL PKRFFGAAR EEGGSLTI+ATAL++TGS+ D+ +EE K TGNMEL LSR+ Sbjct: 282 DAGALLGPKRFFGAARKAEEGGSLTILATALVETGSRADDFYFEELKSTGNMELRLSREP 341 Query: 350 AEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 A +RVFPA++ SGTR+EELL + E + LR+ + +E L+ +L T N Sbjct: 342 ASRRVFPAVEPVGSGTRREELLLSGAETTALRGLRRALVARDGQSGLETLLERLRRTPDN 401 Query: 410 DDFFEMMKRS 419 F ++ + Sbjct: 402 ATFLRQVQPT 411 >UniRef50_C0QKE9 Rho1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKE9_DESAH Length = 355 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 157/354 (44%), Positives = 232/354 (65%), Gaps = 4/354 (1%) Query: 52 DGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYF 111 G LEI+ GFGFLRS + +Y P+D YVS I RF+LR G I G+ + Sbjct: 5 QGYLEIMDRGFGFLRSIEKNYQPEPEDPYVSIPLINRFDLREGSFIVGEGESKGAKNKNL 64 Query: 112 ALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG 171 AL++V+ VN + L + T ++ R + +G +D T + LDL PIG+G Sbjct: 65 ALIRVHTVNGLSLDEYTKISLLQEQTSINPMERYTICQG---PDDTTGKALDLIVPIGKG 121 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK-GEVVAS 230 QRGLI++PPK+GKT +L+++A SI NHP + VLL+DERPEEVT+ +R ++ +V S Sbjct: 122 QRGLIISPPKSGKTTILRHMANSIILNHPKSKVFVLLVDERPEEVTDFRRGLREAQVFYS 181 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVD 290 + D+ S H+++ + + A R E +D ++ +DS+TR+ RA+N + GK +TGG+ Sbjct: 182 SADQQISHHMRMTRLAMHTAIRCAETGQDAVVFIDSLTRMTRAFNIETNSHGKTMTGGLG 241 Query: 291 ANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA 350 ANA+ P++ FGAARN+E GGSLTI+AT L+DTGS+MD++I++EFKGTGNM+L LSR A Sbjct: 242 ANAMAFPRKIFGAARNLESGGSLTILATILVDTGSRMDDIIFQEFKGTGNMDLMLSRACA 301 Query: 351 EKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 E+RV+PAI+ N+SGTRKE+LL +E ++ LR+ + + E+ AM+ I L Sbjct: 302 EQRVWPAININQSGTRKEDLLLDDQEYEETIRLRRELSGLDEVTAMQRFIEYLG 355 >UniRef50_Q2S040 Transcription termination factor rho n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S040_SALRD Length = 373 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 158/360 (43%), Positives = 231/360 (64%), Gaps = 5/360 (1%) Query: 57 ILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKV 116 I + +GF+R DD ++ P I +FNLR G I G ++P ++G + Sbjct: 16 IGEKKYGFMRELRPDLPKDEDDPFMPPPLIGKFNLRDGVVIEGDLKPGRKGGMQVGW--I 73 Query: 117 NEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLI 176 + V PE F+ ++ + +L + G T+D + RVLDL +P+G+GQR LI Sbjct: 74 DSVMGLPPEEWAQLKDFDQGASVYPDEKLDLITG---TDDESMRVLDLVAPLGKGQRALI 130 Query: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236 V+PP+AGKT+LL++IA + NHP+ L+ LL+DERPEEVT+ +R + +V AS+ D Sbjct: 131 VSPPRAGKTVLLKDIAAGVTENHPEVELVSLLVDERPEEVTDFRRTTEAQVFASSNDRGE 190 Query: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296 HV+V+ + +E AKRLVE KDV++LLDS+TRL R +N V SG+ L+GG+DA AL Sbjct: 191 DNHVRVSTLAMEHAKRLVETGKDVVVLLDSLTRLGRTFNLWVDGSGRTLSGGLDAEALKV 250 Query: 297 PKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 356 P++ FG+ARN+E GGSLTIIATAL+DTGS+MDEVI+EEFKGTGN E+ L R++A+KR+FP Sbjct: 251 PRQIFGSARNIEGGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSEIVLDREMADKRIFP 310 Query: 357 AIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 A++ SGTR EE L + +K L + ++ I+AM+ L+ L + +N + Sbjct: 311 AVNLRESGTRNEERLLGEVRRKKHNQLFRALNSRAPIEAMQALLRHLRNSPSNAHLLNEL 370 >UniRef50_A6VWI3 H+transporting two-sector ATPase alpha/beta subunit central region n=4 Tax=Gammaproteobacteria RepID=A6VWI3_MARMS Length = 318 Score = 320 bits (820), Expect = 7e-86, Method: Composition-based stats. Identities = 142/314 (45%), Positives = 204/314 (64%), Gaps = 4/314 (1%) Query: 106 EGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLA 165 +G+R V+EV D N K F N +H + + + G+ T R +DL Sbjct: 9 KGKRSSDATPVDEVVEDLYPNDPEK-RFLNGVAIHPSPCIHLASGSSQR---TVRAMDLI 64 Query: 166 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG 225 +PIG GQRGLIVAPP +GKT +L++I Q++A +P+ L LLIDERPEEVT+ +R V Sbjct: 65 TPIGMGQRGLIVAPPGSGKTTMLKHICQAVAEAYPEIKLYALLIDERPEEVTDFKRSVSA 124 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 EV AS+ DE ++HV+VA+ ++ A++ +DV+I++DS+TRLAR +N SG+ + Sbjct: 125 EVHASSSDESYTQHVRVADALLATARKQAGEGQDVMIVIDSLTRLARVHNAEQRGSGRTM 184 Query: 286 TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 +GG+D AL P++ FGAAR +E GGSLTI+AT L+DTGSKMD+VI+EEFKGTGNME+ L Sbjct: 185 SGGLDTRALEIPRKLFGAARKIENGGSLTILATILVDTGSKMDQVIFEEFKGTGNMEIVL 244 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 SR+ A RVFPAID +S TR+EELL ++L+K+ LR+ + + +D L+ L Sbjct: 245 SREAASHRVFPAIDIAKSSTRREELLIDGKDLEKVRALRRSLTNLKPVDGAHKLVELLEE 304 Query: 406 TKTNDDFFEMMKRS 419 TN + + + Sbjct: 305 FPTNAELLKAFSPT 318 >UniRef50_Q2LRZ2 Flagellum-specific ATP synthase n=20 Tax=Bacteria RepID=Q2LRZ2_SYNAS Length = 455 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 76/301 (25%), Positives = 135/301 (44%), Gaps = 18/301 (5%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTE-DLTARVLDLASPIGRGQRGLIVAPP 180 P + R I E PL+A + RG S D +VL+ G+GQR I A Sbjct: 120 GNPIDNRGPIDTEEEYPLYAEPINPLARGRISDPIDFGVKVLNGLFSCGKGQRMGIFAGS 179 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFD 233 GK++L+ IA++ + + + ++ LI ER EV E + L + VV + D Sbjct: 180 GVGKSVLMGMIARNTSAD----INVIGLIGERGREVREFLEKNLGKEGLARSVVVVAASD 235 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDAN 292 ++ A + ++ + +DV++++DS+TR A A + + G+ T G + Sbjct: 236 MHPLIRMRAAHVATTVSEYFRDQGRDVLLMVDSLTRFAMAQREIGLSVGEPPTTKGYTPS 295 Query: 293 ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 + A VE GS+T + T L++ G +E I + + + L+LSR++A K Sbjct: 296 VFSLLPKLLERAGKVEGRGSITGLYTILVE-GDDFNEPISDAARSILDGHLYLSRELAAK 354 Query: 353 RVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK-TNDD 411 +PA+D S +R + +++ +I+ + E LIN A +N + Sbjct: 355 NHYPAVDVLNSISRVMIDIVSEKHRNMAN---RILSIIAAHKKAEELINIGAYVHGSNAE 411 Query: 412 F 412 Sbjct: 412 I 412 >UniRef50_Q65JM5 Flagellar-specific ATP synthase n=9 Tax=Bacteria RepID=Q65JM5_BACLD Length = 437 Score = 307 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 22/294 (7%) Query: 133 FENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIA 192 + P + R + + R +D +G+GQR I A GK+ L+ IA Sbjct: 123 STDQAPPNPMKRPPIR----EKMAVGVRSIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIA 178 Query: 193 QSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEM 245 + A + + ++ L+ ER EV E + L + VV +T D+PA ++ A Sbjct: 179 RETAAD----LNVIALVGERGREVREFIEKDLGEEGLKRTIVVVATSDQPALMRLKAAYT 234 Query: 246 VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAA 304 A+ + ++V+ ++DS+TR+A A + A+G+ T G + + Sbjct: 235 ATAIAEYFRDKGQNVMFMMDSVTRVAMAQREIGLATGEPPTTKGYTPSVFAILPKLLERT 294 Query: 305 RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 E GS+T T L+D G M+E I + +G + + L R +A K FPA++ +S Sbjct: 295 GTTE-SGSITAFYTVLVD-GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSI 352 Query: 365 TRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK-TNDDFFEMMK 417 +R + ++ ++ R+++ + LIN A K ++ + E ++ Sbjct: 353 SRVMSNIAEKDHIRAANRFREMLSTYQNSED---LINIGAYKKGSSREIDEAIQ 403 >UniRef50_C0QAK1 FliI n=9 Tax=root RepID=C0QAK1_DESAH Length = 451 Score = 306 bits (785), Expect = 8e-82, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 133/284 (46%), Gaps = 14/284 (4%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPP 180 P + + KI F + PL+ N MER D+ ++ P+GRGQR I+A Sbjct: 114 GAPLDGKGKIPFTHKYPLYGNPINPMERKTIKEPLDVGICAINTMIPLGRGQRVAIMAGS 173 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFD 233 GK++L+ + + + V+++ LI ER EV + + + + VVA+T D Sbjct: 174 GVGKSVLMGMMTKHTTAD----VIILGLIGERGREVKDFVSDTLGKEGMERSVVVAATSD 229 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDAN 292 P ++ A + A+ + K+V++++DSITR A + V A+G+ T G + Sbjct: 230 SPPLVRMRGAYLATTLAEYFRDQGKNVLLIMDSITRYAMSSRDVGLAAGEPPTSRGYTPS 289 Query: 293 ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 + A +E GGS+T I T L++ G M++ + + + + + LSR +A K Sbjct: 290 FFVQIPVLLERAGYIEGGGSITGIYTVLVE-GDDMNDPVGDTVRSIVDGHIVLSRDLANK 348 Query: 353 RVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 +PAID S +R ++ E ++ +I + M Sbjct: 349 GHYPAIDVLASVSRVMRDVSQPEHMELRKRAVDVIAAHRGAEDM 392 >UniRef50_Q83MV6 Transcription termination factor Rho n=2 Tax=Tropheryma whipplei RepID=Q83MV6_TROWT Length = 454 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 119/336 (35%), Positives = 193/336 (57%), Gaps = 10/336 (2%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKE----GE 108 GVL++L D F+R+ Y G DIYVS SQ+++++LR GD ++G++ K + Sbjct: 119 GVLDVL-DSCAFIRTT--GYSPGDSDIYVSLSQVKKYSLRKGDAVAGEVARVKSIDSYKQ 175 Query: 109 RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPI 168 R+F L+ VN VN + + + FE+ + RLR+ T + R++DL SP+ Sbjct: 176 RHFPLVSVNTVNGLEFQQVTTRPAFESGMCVPPTRRLRI---TPKTAPVEKRIVDLVSPV 232 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVV 228 +G RGL+ P K+G+T +L IA + + + L+ LL+ RPEE T M R ++GEVV Sbjct: 233 AKGTRGLVRGPSKSGRTTVLHEIAAGLCEQNKELHLITLLVGIRPEEATHMSRTLRGEVV 292 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGG 288 S+ + V VAE+V+E++KRLVE +DV++++DS+T L RAY V +++ Sbjct: 293 VSSMECSPEEQVGVAELVLERSKRLVEQGRDVLLIVDSMTHLGRAYALVGAPPSRLIGSA 352 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 + +AL FF +AR +E GS+T++AT L ++ S D ++ + M+L L + Sbjct: 353 AELSALRPITSFFLSARCIENSGSITMLATVLSESESAFDRLVEYDLVAVSGMQLVLDKL 412 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILR 384 +E+R FPAI+ RS +R E L + E ++ LR Sbjct: 413 ASERRDFPAINPIRSSSRDEFTLLSASEQSEVKRLR 448 >UniRef50_O85632 EscN n=34 Tax=Enterobacteriaceae RepID=O85632_ECOLX Length = 446 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 86/332 (25%), Positives = 142/332 (42%), Gaps = 36/332 (10%) Query: 89 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN---ARNKILFENLTPLHANSRL 145 F +R GD + G++ V+ + +P A + FE L Sbjct: 102 FKIRVGDALLGRL--------------VDGI--GRPMESNIAAPYLPFERSLYAEPPDPL 145 Query: 146 RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 205 + + L R +D G GQR I A GK+ LL I + + +++ Sbjct: 146 -LRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD----IIV 200 Query: 206 VLLIDERPEEVTEMQRLV------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD 259 + LI ER EV E L+ K +V +T D PA ++ A A+ + K+ Sbjct: 201 LALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKN 260 Query: 260 VIILLDSITRLARAYNTVVPASGKV-LTGGVDANALHRPKRFFGAARNVEEGGSLTIIAT 318 V++++DS+TR ARA V ASG+ + GG + + A GS+T I T Sbjct: 261 VLLMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAG-PAPKGSITAIYT 319 Query: 319 ALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQ 378 L+++ +++ I +E + + + L+R++AE+ FPAID S +R + T E L+ Sbjct: 320 VLLES-DNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLR 378 Query: 379 KMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 +K+I + E LI T D Sbjct: 379 AAAECKKLIATYKNV---ELLIRIGEYTMGQD 407 >UniRef50_A0AGH1 Complete genome n=21 Tax=Listeria RepID=A0AGH1_LISW6 Length = 433 Score = 300 bits (769), Expect = 6e-80, Method: Composition-based stats. Identities = 84/337 (24%), Positives = 146/337 (43%), Gaps = 21/337 (6%) Query: 94 GDTISG---KIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERG 150 GD + KI P + F L KV + D ++ PL A R Sbjct: 79 GDWVYVTDTKITIPADE---FLLGKVLNASGDILNEEAGIAPYKQKMPLEAPPIHAFSRA 135 Query: 151 N-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI 209 T + + +D IG GQ+ I A GK+ LL IA++ + + ++ L+ Sbjct: 136 EITETLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIARNAKAD----INIIGLV 191 Query: 210 DERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 ER EV + R L K +VA+T DE ++ A++ A+ + K V++ Sbjct: 192 GERGREVKDFLRKDLGEEGLQKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLL 251 Query: 263 LLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALID 322 ++DS+TR A A +V A + GG K+ + + GS+T I T L+D Sbjct: 252 MMDSVTRFADARRSVDIAVKDLPIGGKTLLMESYMKKLLERSGKTQN-GSITGIYTVLVD 310 Query: 323 TGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWI 382 G M+ + + +G + + L+R++A K +PAID S +R E + + + + Sbjct: 311 -GDDMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASK 369 Query: 383 LRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419 +R+ + E + + F + + T N F ++S Sbjct: 370 IREWMSIYQENE-LYFKLGTIEQTSDNAAIFTSKEKS 405 >UniRef50_P80153 Probable ATP synthase hrpB6 n=230 Tax=Bacteria RepID=HRPB6_XANEU Length = 442 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 133/316 (42%), Gaps = 16/316 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 L + G RP L +V + +P + + I + P+ A + M R Sbjct: 82 GLSRETRVIGLGRPLAVPVGPALLGRVLD-GLGEPSDGQGAIACDTWVPIQAQAPDPMRR 140 Query: 150 GNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 R++D +G GQR I A GK+ L+ A+ + V +++L Sbjct: 141 RLIEHPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCD----VNVIVL 196 Query: 209 IDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ER EV E L+ + VV +T D + + A + A+ + V+ Sbjct: 197 IGERGREVREFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVL 256 Query: 262 ILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 +++DS+TR ARA + A+G+ T G + R A + E GS+T T L Sbjct: 257 LMMDSLTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAG-MGESGSITAFYTVL 315 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 + + I EE +G + L LSR+IA K +PAID S +R + + Q Sbjct: 316 AE-DDTGSDPIAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPYDHSQAA 374 Query: 381 WILRKIIHPMGEIDAM 396 LR+++ E++ + Sbjct: 375 GRLRRLLAKYNEVETL 390 >UniRef50_A7HV56 Flagellar protein export ATPase FliI n=8 Tax=Rhizobiales RepID=A7HV56_PARL1 Length = 445 Score = 297 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 79/304 (25%), Positives = 135/304 (44%), Gaps = 24/304 (7%) Query: 117 NEVNFDKP--ENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRG 174 ++ P + A+ +L P H R+R DL R L+ + RGQR Sbjct: 107 EPMDGKGPIAQGAQPYLLRNMPPPAHTRQRVR------GKIDLGVRALNTFTTCCRGQRM 160 Query: 175 LIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEV 227 I A GK++LL +A++ A + V ++ LI ER EV E + L + V Sbjct: 161 GIFAGSGVGKSVLLSMLARNTACD----VSVIGLIGERGREVQEFIEDDLGPEGLARSVV 216 Query: 228 VASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT- 286 V +T DEPA Q A + + A+ + ++V+ ++DS+TR A A + ++G+ T Sbjct: 217 VVATSDEPALMRRQAAYLTLSLAEYFRDRDQNVLCMMDSVTRFAVAQREIGLSTGEPPTS 276 Query: 287 GGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 G + A G++T + T L+D G +E + + + + + + Sbjct: 277 KGYTPTVFAELPKLLERAGPGTGSGNITGLFTVLVD-GDDHNEPVADAVRSILDGHIVME 335 Query: 347 RKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMT 406 R IAE+ +PAI+ +S +R E ++ ++R+ M D ME LI A Sbjct: 336 RSIAERGRYPAINVLKSVSRTMP---DCNEAEENELIRRARALMATYDDMEELIRLGAYR 392 Query: 407 KTND 410 +D Sbjct: 393 PGSD 396 >UniRef50_Q5DY25 Lateral flagellar export/assembly protein (LfiI-like) n=78 Tax=Proteobacteria RepID=Q5DY25_ECOLX Length = 445 Score = 297 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 75/288 (26%), Positives = 128/288 (44%), Gaps = 15/288 (5%) Query: 119 VNF-DKPENARNKILFENLTPLHANSRLRM-ERGNGSTEDLTARVLDLASPIGRGQRGLI 176 VN +P + + ++ +L P S + R D+ + ++ IG+GQR + Sbjct: 106 VNGLGEPLDGKGRLNGNDLLPPLPPSVNPLTRRSVDEPLDVGVKAINGLLTIGKGQRVGL 165 Query: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVA 229 +A GK++LL I + + +++V LI ER EV E L K VV Sbjct: 166 MAGSGVGKSVLLGMITRQTKAD----IVVVGLIGERGREVKEFIDHSLGADGLAKSIVVV 221 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGG 288 + DE ++ E+ A + V++L+DS+TR A A + + G+ T G Sbjct: 222 APADESPLMRLKATELCHSIAAWFRDRGHHVLLLVDSLTRYAMAQREIALSLGEPPATKG 281 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 +A + +A N E GS+T I T L + G + I + + + + L+RK Sbjct: 282 YPPSAFGMIPKLVESAGNSESSGSMTAIYTVLAE-GDDQQDPIVDCARAVLDGHIVLTRK 340 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 +AE +PAID +S +R +T+ E Q L++ EI + Sbjct: 341 LAEAGHYPAIDIGQSISRCMNQVTSLEHQQSARALKQNYAAYMEIKPL 388 >UniRef50_P74857 Probable secretion system apparatus ATP synthase ssaN n=63 Tax=Gammaproteobacteria RepID=SSAN_SALTY Length = 433 Score = 297 bits (761), Expect = 5e-79, Method: Composition-based stats. Identities = 74/318 (23%), Positives = 134/318 (42%), Gaps = 30/318 (9%) Query: 87 RRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLR 146 RR + G+ + G++ F +P + R Sbjct: 87 RRHQVPVGEALLGRVIDG----------------FGRPLDGRELPDVCWKDYDAMPPPAM 130 Query: 147 MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV 206 + + R +D + G GQR I + P GK+ LL + + + ++ Sbjct: 131 VRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS----NVL 186 Query: 207 LLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD 259 +LI ER EV E + + +V +T D PA V+ + A+ ++ K Sbjct: 187 VLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGKR 246 Query: 260 VIILLDSITRLARAYNTVVPASGKV-LTGGVDANALHRPKRFFGAARNVEEGGSLTIIAT 318 V++L DS+TR ARA + A+G+ ++G R + E GS+T T Sbjct: 247 VVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTG-MGEKGSITAFYT 305 Query: 319 ALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQ 378 L++ G M+E + +E + + + LSR++AE+ +PAID + +R ++T+ E Q Sbjct: 306 VLVE-GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHEHRQ 364 Query: 379 KMWILRKIIHPMGEIDAM 396 ILR+ + E++ + Sbjct: 365 LAAILRRCLALYQEVELL 382 >UniRef50_B2V6Q6 Flagellar protein export ATPase FliI n=4 Tax=Bacteria RepID=B2V6Q6_SULSY Length = 437 Score = 297 bits (761), Expect = 5e-79, Method: Composition-based stats. Identities = 85/291 (29%), Positives = 132/291 (45%), Gaps = 17/291 (5%) Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQRGLIVAP 179 F +P N + KI + N L + +ER DL R ++ IG+GQR I++ Sbjct: 98 FGRPLN-KEKINYSNSYYLKLETINPLERERVTEVLDLGVRAVNALFTIGKGQRMGILSG 156 Query: 180 PKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTF 232 GK+ LL I++ + V ++ LI ER EV E + L K VV +T Sbjct: 157 AGVGKSTLLGMISRFTESD----VNVIALIGERGREVREFIEDSLKEEGLKKSVVVVATS 212 Query: 233 DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDA 291 D P ++ + A+ K+V+ LLDS+TR+A A + ++G+ T G Sbjct: 213 DMPPLAKIRAVMTSLAIARYFSNIGKNVLYLLDSLTRVAMAQREIGLSAGEPPTTKGYTP 272 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 + R A N + GS+T I T L++ ++ I + + + LSR+IA Sbjct: 273 SVFTLLPRIIEQAGNFKNKGSITGIYTVLVEGDEIQNDPIADAAISFLDGHIVLSRQIAN 332 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 KR++PAID +S +R L E M KII + ME +IN Sbjct: 333 KRIYPAIDILKSISRLMPQLVNDE---IMLYQSKIISLEAKYREMEDMINL 380 >UniRef50_C0QPA7 Flagellar protein export ATPase FliI n=1 Tax=Persephonella marina EX-H1 RepID=C0QPA7_PERMH Length = 443 Score = 297 bits (760), Expect = 7e-79, Method: Composition-based stats. Identities = 91/331 (27%), Positives = 145/331 (43%), Gaps = 16/331 (4%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 +R G + + + P E LL F KP N +++I + L + ++R Sbjct: 68 GIRVGSWVEAR-QEPVSIEVGEELLGTVLDPFGKPLN-KDRINPSHHYYLKNATINPLDR 125 Query: 150 GNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 D+ R ++ IG+GQR I + GK+ LL I++ + V ++ L Sbjct: 126 ERIKEPLDVGVRSINALLTIGKGQRIGIFSGAGVGKSTLLGMISRFTEAD----VNVIAL 181 Query: 209 IDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ER EV E + L K V+ +T D+ ++ A I AK K+V+ Sbjct: 182 IGERGREVREFIEDNLGEEGLKKSVVIVATSDQTPLAKIRAAYSAIAVAKFFSNSGKNVL 241 Query: 262 ILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 LLDS+TRLA A + A G+ T G + +F A N GS+T I T L Sbjct: 242 FLLDSLTRLAMAQREIGLAVGEPPTTKGYTPSVFALLPKFIEQAGNFYNRGSITGIYTVL 301 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 ++ + + + G + + LSR++A KRVFPAID +S +R + + + L+ Sbjct: 302 VEGDDITMDPVADAAMGFLDGHIVLSRELANKRVFPAIDVLKSVSRLMPQIVSDDILKYQ 361 Query: 381 WILRKIIHPMGEIDAMEFL-INKLAMTKTND 410 I +I E + M L + K T D Sbjct: 362 GIFTEIESIYREAEDMINLGLYKKGTTPKVD 392 >UniRef50_UPI0001C31239 flagellar protein export ATPase FliI n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31239 Length = 489 Score = 296 bits (759), Expect = 8e-79, Method: Composition-based stats. Identities = 81/315 (25%), Positives = 134/315 (42%), Gaps = 28/315 (8%) Query: 89 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRME 148 F +R G + G++ ++ P N +P R R++ Sbjct: 107 FRIRVGQDLLGRVIDGLGK----------PIDGM-PRATNGHPRSTNASPPDPLDRPRID 155 Query: 149 RGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 DL R LD P GRGQR I A GK+ LL IA+S + V ++ L Sbjct: 156 ----QRVDLGVRALDALVPCGRGQRLGIFAGSGVGKSSLLGMIARSTTAD----VNVIAL 207 Query: 209 IDERPEEVTEMQR------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 + ER EV E L + VV +T D+PA ++ A A+ + DV++ Sbjct: 208 VGERGREVKEFVERDLGDALSRSVVVVATSDQPALVRIKAAFTATAIAEHFRDQGNDVML 267 Query: 263 LLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALI 321 ++DS+TR A A V A G+ T G + + R + GS+T + T L+ Sbjct: 268 MMDSVTRFAMAQREVGLAIGEPPATRGYTPSVFAQLPRLLERSGTA-RTGSITGLYTVLV 326 Query: 322 DTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMW 381 D G M+E I + + + + L+R++A +PAID +S +R + + E Sbjct: 327 D-GDDMNEPIADAVRSILDGHVVLTRELAHASHYPAIDVLQSVSRLVGEIVSPEVRAAGQ 385 Query: 382 ILRKIIHPMGEIDAM 396 +R+++ E + + Sbjct: 386 AVRQLMASYKEKEDL 400 >UniRef50_A0RC86 Flagellum-specific ATP synthase n=70 Tax=Bacillus cereus group RepID=A0RC86_BACAH Length = 434 Score = 296 bits (759), Expect = 9e-79, Method: Composition-based stats. Identities = 77/333 (23%), Positives = 139/333 (41%), Gaps = 25/333 (7%) Query: 97 ISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFE----NLTPLHANSRLRMERGNG 152 +S + P+ L KV N + I + + P+HA R Sbjct: 87 VSEDVVIPRGNH---LLGKVLSANGEVLNENAENIPLQKIKLDAPPIHAFER----EEIT 139 Query: 153 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 212 + + +D IG GQ+ I A GK+ LL IA++ + + ++ L+ ER Sbjct: 140 DVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD----INVISLVGER 195 Query: 213 PEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLD 265 EV + R + K VV +T DE ++ A++ A+ + +V++++D Sbjct: 196 GREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMD 255 Query: 266 SITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGS 325 S+TR A A +V A ++ GG K+ + + GS+T I T L+D G Sbjct: 256 SVTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLERSGKT-QKGSITGIYTVLVD-GD 313 Query: 326 KMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRK 385 ++ + + +G + + L R++A +PAI S +R E + + Q +RK Sbjct: 314 DLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSPTHWQLANEMRK 373 Query: 386 IIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 I+ E + + F + + N FE + Sbjct: 374 ILSVYKENE-LYFKLGTIQENTENAYIFECKNK 405 >UniRef50_Q9ZJJ3 Flagellum-specific ATP synthase n=41 Tax=Epsilonproteobacteria RepID=FLII_HELPJ Length = 434 Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 66/302 (21%), Positives = 131/302 (43%), Gaps = 17/302 (5%) Query: 126 NARNKILFENLTPLHANSRLRMERG-NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGK 184 + + + +E L P+ ++RG + + +D G+GQ+ I A GK Sbjct: 111 DNKGVLDYERLAPVITTPIAPLKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGK 170 Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-QRLVKG-----EVVASTFDEPASR 238 + L+ I + + ++ LI ER E+ E ++ +KG +V +T D+ Sbjct: 171 STLMGMITRGCLA----PIKVIALIGERGREIPEFIEKNLKGDLSSCVLVVATSDDSPLM 226 Query: 239 HVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRP 297 A + A+ DV+ ++DS+TR A A + A G+ T G +AL Sbjct: 227 RKYGAFCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLL 286 Query: 298 KRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPA 357 + A E GS+T + L++ G + + I ++ + + + LSR++ + ++P Sbjct: 287 PQLMERAGKEENKGSITAFFSVLVE-GDDLSDPIADQARSILDGHIVLSRELTDYGIYPP 345 Query: 358 IDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND-DFFEMM 416 I+ S +R + + ++ + R++ + E E LI + ND + E + Sbjct: 346 INILNSASRVAKDIISESQNLCARKFRRLYALLKEN---EMLIRIGSYQMGNDKELDEAI 402 Query: 417 KR 418 K+ Sbjct: 403 KK 404 >UniRef50_Q0EZL2 Flagellum-specific ATP synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZL2_9PROT Length = 471 Score = 296 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 82/334 (24%), Positives = 136/334 (40%), Gaps = 19/334 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 + GD I P L +V + P + L PLH R Sbjct: 84 GIAPGDPIEPLSTTPSIRVGPHLLGRVLDAQG-NPMDEYALSNLGTLFPLHGTRLNPFTR 142 Query: 150 GNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 L R +D P+G GQR + A GK+ LL +A++ V ++ L Sbjct: 143 HTIDAPMQLGVRAIDACMPMGWGQRMGLFAGAGVGKSTLLGMLARNSDAE----VNVIAL 198 Query: 209 IDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 + ER EV E + L V+ +T D P V+ A M A+ E K V+ Sbjct: 199 VGERSREVREFLDQALGSEALQHSVVIVATSDMPPVLRVRAAHMATTIAEAFREQGKRVL 258 Query: 262 ILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAAR-NVEEGGSLTIIATA 319 +L+DS+TR+A+A + G+ + G + + +GG ++ T Sbjct: 259 LLMDSLTRVAQAQREIGLMLGEPPASKGYTPSCFSILAELLERSGPGTAQGGDISAFYTV 318 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK 379 L++ + I + + + L RK+AE+ FPAI+ RS +R + L E++Q Sbjct: 319 LVEGDDMRADPIADSAMSVLDGHILLDRKLAEQGHFPAINVLRSISRLDTQLMNNEQMQA 378 Query: 380 MWILRKIIHPMGEIDAMEFLINKLAMTK-TNDDF 412 +LR+ M + ME +I+ A + +N + Sbjct: 379 ARMLRR---KMSIFERMEDMISIGAYEQGSNPEL 409 >UniRef50_B8J143 ATPase FliI/YscN n=13 Tax=cellular organisms RepID=B8J143_DESDA Length = 504 Score = 294 bits (753), Expect = 4e-78, Method: Composition-based stats. Identities = 69/293 (23%), Positives = 135/293 (46%), Gaps = 19/293 (6%) Query: 135 NLTPLHANSRLRMERGNGST-EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 193 L P++A+ ++R + D+ R ++ +G+GQR I+A GK+ L+ +A+ Sbjct: 162 ELVPIYADPPSPLQRPRITDILDVGVRSVNSLLTLGKGQRVGIMAGSGVGKSTLMGMMAR 221 Query: 194 SIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMV 246 + V ++ LI ER EV E + + + +V +T D+ ++ A Sbjct: 222 YTRAD----VNVIALIGERGREVVEFMERDLGPEGMARSVLVIATSDQSPLVRMRAAYAA 277 Query: 247 IEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAAR 305 A+ + DV++++DS+TR A A V A G+ T G + + A Sbjct: 278 TGVAEYFRDKGMDVLLMMDSVTRFAMAAREVGLAVGEPPTTKGYTPTVFAQLPKLLERAG 337 Query: 306 NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT 365 G++T I T L+D G +E I + + + + L+R +A++ FPAID RS + Sbjct: 338 RSAR-GTITGIYTVLVD-GDDFNEPIADAVRSILDGHIVLTRDLADQGHFPAIDVLRSIS 395 Query: 366 RKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK-TNDDFFEMMK 417 R + ++++ ++ + + +++ M +N A K TN + ++ Sbjct: 396 RLRSDICDRQDVLSGRVVTRNMSTFRKVEDM---VNIGAYAKGTNAEIDAAIE 445 >UniRef50_Q2RX15 ATPase FliI/YscN n=35 Tax=Alphaproteobacteria RepID=Q2RX15_RHORT Length = 475 Score = 293 bits (751), Expect = 7e-78, Method: Composition-based stats. Identities = 73/308 (23%), Positives = 124/308 (40%), Gaps = 18/308 (5%) Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN-GSTEDLTARVLDLASPIGRG 171 L +V + + E + R G DL R ++ RG Sbjct: 102 LGRVINAMGEAVDGKGALPAGERAVAIRGRPPSAHSRQRVGGKLDLGVRAINTFLTCCRG 161 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVK 224 QR I A GK+ ++ ++ + V+++ L+ ER E E + L + Sbjct: 162 QRMGIFAGSGVGKSSVMSMFIRNTNAD----VIVMGLVGERGREAREFIEDDLGEEGLKR 217 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 V +T DE Q A M + A+ + DV+ L+DS+TR A A + ++G+ Sbjct: 218 AVTVVATSDESPLMRRQAAYMTLAVAEYFRDQGLDVLCLMDSVTRFAMAQREISLSAGEP 277 Query: 285 L-TGGVDANALHRPKRFFGAAR-NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 + G + A VE GS+T + T L++ G +E I + +G + Sbjct: 278 PASKGYTPTVFAELPKLLERAGPGVEGSGSITGLFTVLVE-GDDHNEPISDAVRGILDGH 336 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 + L R IAE+ +PAI+ RS +R + E + R+++ + M LI Sbjct: 337 IVLDRAIAERGRYPAINILRSVSRTMPGCNSPAENALVAKGRRLMAAY---ENMAELIRL 393 Query: 403 LAMTKTND 410 A K +D Sbjct: 394 GAYRKGSD 401 >UniRef50_B9L4D4 Flagellar protein export ATPase FliI n=13 Tax=Bacteria RepID=B9L4D4_THERP Length = 450 Score = 293 bits (750), Expect = 9e-78, Method: Composition-based stats. Identities = 78/309 (25%), Positives = 130/309 (42%), Gaps = 20/309 (6%) Query: 119 VNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVA 178 ++ P R ++ P R + R +D GRGQR I A Sbjct: 115 IDGKGPLRCRRRLRI-GGAPPSPLQRAPIR----DILPTGVRTIDALLTCGRGQRLGIFA 169 Query: 179 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVAST 231 GK+ LL I+++ + V ++ LI ER EV E L + VV ST Sbjct: 170 GSGVGKSTLLGMISRNAVCD----VRVIALIGERGREVQEFIERDLGPAGLEQAVVVVST 225 Query: 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVD 290 D+PA ++ A A+ + V++++DS+TRLA A V A+G+ T G Sbjct: 226 SDQPALMRIKAAWTATLIAEYFRDRGMSVVLMMDSVTRLAMAQREVGLAAGEPPATRGYP 285 Query: 291 ANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA 350 + R A N E+ GS+T T L++ G ++E I + +G + + L+R +A Sbjct: 286 PSVFALLPRLLERAGNAEQ-GSITAFYTVLVE-GDDLNEPISDTVRGILDGHIVLARTLA 343 Query: 351 EKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMT-KTN 409 ++ +PAID S +R L T + +R+++ + + + T T Sbjct: 344 DRGHYPAIDVLASVSRLMPSLVTPDHRALASEVRELLAAYESARDLIDIGAYVHGTNPTV 403 Query: 410 DDFFEMMKR 418 D +M Sbjct: 404 DRALSLMPE 412 >UniRef50_A6W8K0 ATPase, FliI/YscN family n=44 Tax=Bacteria RepID=A6W8K0_KINRD Length = 453 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 81/305 (26%), Positives = 127/305 (41%), Gaps = 15/305 (4%) Query: 101 IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTA 159 +R P + ALL P + + PLHA M RG L Sbjct: 99 VRRPSDVPVGPALLGRVVDALGNPLDGGPPLHTAPRGPLHATPPPAMTRGRVDAPLSLGV 158 Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R LD P GRGQR I A GK+ LL IA+ + + V ++ L+ ER EV E Sbjct: 159 RALDTLVPAGRGQRFGIFAGSGVGKSSLLSMIARGTSAD----VSVLALVGERGREVREF 214 Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 + L + VV +T DE ++ + A+ + D ++++DS+TR+A Sbjct: 215 LEDDLGPEGLARSVVVIATSDEAPVLRLRASLTATTVAESFRDMGADCVLMMDSLTRVAM 274 Query: 273 AYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVI 331 A + + G+ T G + R A GS+T I T L+D G +E I Sbjct: 275 AQREIGLSVGEPPATRGYPPSVFALMPRLLERAG-PGVTGSITGIYTVLVD-GDDHNEPI 332 Query: 332 YEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMG 391 + + + + L R++A FP ID S +R +TT E+ LR+++ Sbjct: 333 ADNARSILDGHVVLDRRLATAGHFPTIDVLESVSRVAGRVTTPEQKSAATALRRVMAAHR 392 Query: 392 EIDAM 396 + + Sbjct: 393 DAKEL 397 >UniRef50_D1BD12 Type III secretion system ATPase, FliI/YscN n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BD12_SANKS Length = 459 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 125/284 (44%), Gaps = 15/284 (5%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPP 180 +P + R ++ PL + +ER L R LD + +GRGQR + A Sbjct: 126 GRPLDGRGPLVGTTTVPLDGRAPHPLERQRVAQPLTLGVRTLDTLTTVGRGQRMGLFAGS 185 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFD 233 GK+ LL +A+ V ++ L+ ER EV E + L + VV +T D Sbjct: 186 GVGKSTLLSMVARGTDA----AVSVIALVGERGREVREFLEDDLGPEGLARSVVVVATSD 241 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDAN 292 EPA ++ A + A+ E +DV++++DS+TR+A A + + G+ T G + Sbjct: 242 EPALVRLRAAFVATRIAESFRESGEDVVLMMDSLTRVAMAQREIGLSVGEPPATRGYPPS 301 Query: 293 ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 A GS+T I T L+D G +E I + + + + L R++A Sbjct: 302 TFSVLAELLERAGTSAR-GSVTGIYTVLVD-GDDHNEPIADAARSILDGHVVLDRRLAVA 359 Query: 353 RVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 FP+ID S +R +T+ + LRK++ + + Sbjct: 360 GHFPSIDALGSISRVATRVTSAAQRADATALRKVMSARRAVQDL 403 >UniRef50_Q9I4N1 Flagellum-specific ATP synthase n=174 Tax=Proteobacteria RepID=FLII_PSEAE Length = 451 Score = 290 bits (743), Expect = 6e-77, Method: Composition-based stats. Identities = 69/285 (24%), Positives = 128/285 (44%), Gaps = 15/285 (5%) Query: 122 DKPENARNKILFENLTPLHANSRLRMER-GNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 + + + + E+ P+ + ++R D+ R ++ +GRGQR + A Sbjct: 118 GRALDGKGGMRAEDWVPMDGPTINPLKRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGT 177 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFD 233 GK++LL + + + +++V LI ER EV E + L + VVAS D Sbjct: 178 GVGKSVLLGMMTRFTRAD----IIVVGLIGERGREVKEFIDEILGEEGLKRSVVVASPAD 233 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDAN 292 + ++ A+ A+ + K+V++L+DS+TR A+A + A G+ T G + Sbjct: 234 DAPLMRLRAAQYCTRIAEYFRDKGKNVLLLMDSLTRYAQAQREIALAIGEPPATKGYPPS 293 Query: 293 ALHRPKRFFGAARNVE-EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 + + A N E GGS+T T L + G + I + +G + LSR++AE Sbjct: 294 VFAKLPKLVERAGNAEAGGGSITAFYTVLSE-GDDQQDPIADAARGVLDGHFVLSRRLAE 352 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 + +PAID S +R + E L+ +++ + + Sbjct: 353 EGHYPAIDIEASISRVMPQVVEAEHLRDAQRFKQLWSRYQQSRDL 397 >UniRef50_O83417 Flagellum-specific ATP synthase n=106 Tax=Bacteria RepID=FLII_TREPA Length = 447 Score = 290 bits (742), Expect = 9e-77, Method: Composition-based stats. Identities = 71/265 (26%), Positives = 123/265 (46%), Gaps = 18/265 (6%) Query: 140 HANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 199 + RL + R + RVLD +G GQR I + GK+ L+ IA++ + Sbjct: 133 NPMERLPITRQMVT----GVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDAD- 187 Query: 200 PDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKR 252 V ++ LI ER EV + + L + +V++T DE V+ A A+ Sbjct: 188 ---VSVIALIGERGREVMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEY 244 Query: 253 LVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGVDANALHRPKRFFGAARNVEEGG 311 + K V++L DS+TR A+A + ASG+ T G + A + G Sbjct: 245 FRDQGKQVLLLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSF-SMG 303 Query: 312 SLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL 371 S+T T L+D G +DE I + +G + + LSR +A++ +PAID +S +R + Sbjct: 304 SVTAFYTVLVD-GDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRV 362 Query: 372 TTQEELQKMWILRKIIHPMGEIDAM 396 + + + I+R+ + E++ + Sbjct: 363 LGADMKEAVRIVRRALAVYAEVEDL 387 >UniRef50_D2LCY5 ATPase, FliI/YscN family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LCY5_RHOVA Length = 459 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 70/309 (22%), Positives = 124/309 (40%), Gaps = 17/309 (5%) Query: 115 KVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQR 173 +V + +N P+ L +ER RV+D+ +P+ GQR Sbjct: 122 RVIDALGRPIDNGPPLARGRRSIPVDQAPPLALERQRVSEPVPTGVRVIDVFTPLCAGQR 181 Query: 174 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ-------RLVKGE 226 I A GK+ LL + + +++ V + I ER EV E L K Sbjct: 182 IGIFAGSGVGKSTLLSMLTRGSSFD----VTVFAAIGERGREVREFIDDTLAKAGLAKAV 237 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL- 285 +V ST DE A+ A+ + + V+++ DS+TR A A + +SG+ Sbjct: 238 LVVSTSDESPMMRRLAAKTAFTVAEYFRDEGQRVLLVFDSVTRYAHAVREIALSSGEPPV 297 Query: 286 TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 + G + + A N GS+T + + L+D G ++ + + +G + + L Sbjct: 298 SRGYPPSVFTDLPKLLERAGNASGTGSITGVFSVLVD-GDDHNDPVADTLRGILDGHIVL 356 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 R IA++ FPA+D S +R + + + + LR +I E + + Sbjct: 357 DRAIADQGRFPAVDILGSVSRLAPRVWSPSQKTAVRDLRGLISRFEETRDIRMIAGH--- 413 Query: 406 TKTNDDFFE 414 ND + Sbjct: 414 KPNNDAELD 422 >UniRef50_UPI00018529F8 transcription termination factor Rho n=2 Tax=Helicobacter pylori RepID=UPI00018529F8 Length = 245 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 105/225 (46%), Positives = 156/225 (69%), Gaps = 3/225 (1%) Query: 2 NLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61 ++ +L+ P +L+ + + +EN ++QD++F ILK G I G+LEI+ DG Sbjct: 24 HIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDG 83 Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 +GFLR D S+ G +D YVSPSQIRRF LR GD ++G++R PK+ E+Y+ALLK+ +N+ Sbjct: 84 YGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINY 143 Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 + +N+ LF+NLTPL + ++++E +T R+LDL SP+G+GQR LIVAPP+ Sbjct: 144 LPSDEIKNRPLFDNLTPLFPDEQIKLEY---EPTKVTGRMLDLFSPVGKGQRALIVAPPR 200 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE 226 GKT L++ +AQ I NHP+ L++LL+DERPEEVT+MQR VKG+ Sbjct: 201 TGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQ 245 >UniRef50_C1A560 Flagellum-specific ATP synthase n=6 Tax=Bacteria RepID=C1A560_GEMAT Length = 457 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 71/284 (25%), Positives = 131/284 (46%), Gaps = 15/284 (5%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPP 180 P + + K+ L A ++R + R +D IGRGQR I A Sbjct: 121 GHPIDGKGKLDTIERVSLSAEPPNPLQRETIDRPMETGVRAIDGLLTIGRGQRVGIFAGS 180 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFD 233 GK+ +L +A+S + V ++ L+ ER EV E + L + V+ +T D Sbjct: 181 GVGKSTMLGMVARSAKAD----VNVIALLGERGREVREFLENSLGAEGLARSVVIVATGD 236 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDAN 292 + A + A + A+ + K+V++++DS+TR+A A+ + A+G+ T G + Sbjct: 237 QAALVRARGALVATAIAEYFRDQGKEVLLMVDSVTRVAMAWREIGLATGEPPTTKGYPPS 296 Query: 293 ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 R A N E GG +T I T L+D G +E + + + + + L+R++A + Sbjct: 297 VFANLPRLLERAGNGERGG-ITGIYTVLVD-GDDFNEPVADAARSILDGHIVLTRRLAAQ 354 Query: 353 RVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 FPAID S +R ++ +T + + + + ++ E + + Sbjct: 355 NHFPAIDVLDSKSRVKDHITNEAQRRSGAAMLRLEAAYREKEDL 398 >UniRef50_Q1D9L1 ATPase, FliI/YscN family n=2 Tax=Cystobacterineae RepID=Q1D9L1_MYXXD Length = 437 Score = 287 bits (735), Expect = 5e-76, Method: Composition-based stats. Identities = 75/322 (23%), Positives = 139/322 (43%), Gaps = 30/322 (9%) Query: 87 RRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFE-NLTPLHANSRL 145 + +++ G+ + G++ L + E P I + + +R Sbjct: 89 KPLSIKCGEALLGRV-----------LNGIGEPMDGHPLPEEGLIDWSVDRDCPDPFTRQ 137 Query: 146 RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 205 R+ER L R +D +G GQR + A GK+ L+ IA++ + + + Sbjct: 138 RIER----PLPLGVRCIDGLLTVGEGQRVGLFAGSGVGKSTLMGQIARNTKAD----LCV 189 Query: 206 VLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK 258 V LI ER EV E + + + +V +T D+P+ ++ A + A+ E Sbjct: 190 VALIGERGREVREFIEDAMGEEGMKRSVLVCATSDQPSLVRLRAAYVATAIAEYFRERGG 249 Query: 259 DVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIA 317 +V+ +LD++TRLARA + A G+ G + R N E+ G T I Sbjct: 250 NVLFMLDTVTRLARAQREIGLAVGEPPARQGYPPSVFSMLPRILERTGNSEK-GKCTAIY 308 Query: 318 TALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEEL 377 T L+ G M+E I +E +G + L+R + E+ +PA+D S +R + +++ Sbjct: 309 TCLV-AGGDMEEPIADEVRGILDGHFILNRALGERNQWPAMDVLASLSRVMSGIVSKDHK 367 Query: 378 QKMWILRKIIHPMGEIDAMEFL 399 + LR+++ + + L Sbjct: 368 KAAGRLRELLSTYEKQRDLILL 389 >UniRef50_D2R528 ATPase, FliI/YscN family n=4 Tax=Planctomycetaceae RepID=D2R528_9PLAN Length = 455 Score = 287 bits (735), Expect = 5e-76, Method: Composition-based stats. Identities = 77/317 (24%), Positives = 140/317 (44%), Gaps = 18/317 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALL-KVNEVNFDKPENARNKILFENLTPLHANSRLRME 148 +R G+ ++ R + LL +V + + + + + PL Sbjct: 74 GIRQGNRVT-LARSTRSVRVGNQLLGRVIDARGR-VIDNKPAPVLADRVPLDRKPPAATS 131 Query: 149 RGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207 R +T R +D G GQR + A GK++ L +A+ + + V+++ Sbjct: 132 RPRIDTTFSTGVRAIDGLLTCGVGQRIGVFAGSGVGKSVTLGMMAKYSSAD----VIVIG 187 Query: 208 LIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260 LI ER EV E L + V +T DEPA VQ A A+ + K+V Sbjct: 188 LIGERGREVNEFLERDLGPTGLARSVCVVATSDEPAIMRVQAASTATAVAEYFRDQGKNV 247 Query: 261 IILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATA 319 ++++DS+TR A A + A+G+ T G + R A + GS+T I + Sbjct: 248 LLMMDSLTRFALAQREIGLAAGEPPTTRGYPPSVFALLPRLVERAGRTPQ-GSITAIYSV 306 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK 379 L++ G ++E + + +G + + LSRK+A + +PAI+ S +R +TT ++ Sbjct: 307 LVE-GDDVNEPVSDTVRGLLDGHVILSRKLAAQSHYPAIEVLGSISRLFTEITTPQQRSA 365 Query: 380 MWILRKIIHPMGEIDAM 396 I+R+++ E + + Sbjct: 366 AAIVRELLSAYREHEDL 382 >UniRef50_P55717 Probable ATP synthase y4yI n=30 Tax=Bacteria RepID=Y4YI_RHISN Length = 451 Score = 287 bits (735), Expect = 6e-76, Method: Composition-based stats. Identities = 85/297 (28%), Positives = 127/297 (42%), Gaps = 18/297 (6%) Query: 123 KPENARNKILFENLTPLHANSRLRMERGNGSTE-DLTARVLDLASPIGRGQRGLIVAPPK 181 +P + + ++ + PLH + M R L R LD G GQR I P Sbjct: 125 RPLDGKGEVKTTEVRPLHGRAPNPMTRRMVERPFPLGVRALDGLLTCGEGQRIGIYGEPG 184 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDE 234 GK+ L+ I + A + V++V LI ER EV E + L + VV T D Sbjct: 185 GGKSTLISQIVKGAAAD----VVIVALIGERGREVREFVERHLGEEGLRRAIVVVETSDR 240 Query: 235 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANA 293 A+ Q A M A+ E V +LLDS+TR RA + A+G+ T G + Sbjct: 241 SATERAQCAPMATALAEYFREQGLRVALLLDSLTRFCRAMREIGLAAGEPPTRRGFPPSV 300 Query: 294 LHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKR 353 A E GS+T T L++ G + I EE +G + + LSR +A + Sbjct: 301 FAALPGLLERAGLGER-GSITAFYTVLVE-GDGTGDPIAEESRGILDGHIVLSRALAARS 358 Query: 354 VFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 FPAID +S +R + + ++ + R ++ E EFLIN + D Sbjct: 359 HFPAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARYAEC---EFLINVGEYKQGGD 412 >UniRef50_C8WBT8 ATPase, FliI/YscN family n=7 Tax=Sphingomonadales RepID=C8WBT8_ZYMMN Length = 443 Score = 286 bits (733), Expect = 9e-76, Method: Composition-based stats. Identities = 76/288 (26%), Positives = 124/288 (43%), Gaps = 15/288 (5%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPP 180 +P + I+ + PL + RG + D+ R ++ G GQR I+A Sbjct: 113 GEPLDNLGPIITDEYWPLVGKMGNPLNRGRVTQPFDMGVRAINALLTAGVGQRIAIMAGS 172 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFD 233 GK++L+ + + V++ LI ER EVT+ K VVA D Sbjct: 173 GVGKSVLMGQMIAGAKAD----VIVTGLIGERSREVTDFVETKISDDVRPKSVVVAVPAD 228 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDAN 292 P ++ A A+ K+V++L+DS+TR+A A V + G+ T G + Sbjct: 229 HPPVLRLRAAMRATAIAEYFRAKGKNVLLLIDSLTRIAHAQREVGLSLGEPPTIKGYPPS 288 Query: 293 ALHRPKRFFGAARN-VEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 AL R A + G++T I T L D G D+ I + + + + LSR +AE Sbjct: 289 ALGLIPRLVERAGIDIHSKGAITAIYTVLAD-GDDPDDPIVDTARAIVDGHIILSRSLAE 347 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 + VFPAID +S +R + + Q LR++ E + + Sbjct: 348 QGVFPAIDLGKSLSRVMSDIISPGHRQAAAHLRRLWSVYEENRDLILM 395 >UniRef50_C0QZ72 Flagellar biosynthesis/type III secretory pathway ATPase n=34 Tax=Bacteria RepID=C0QZ72_BRAHW Length = 484 Score = 286 bits (733), Expect = 9e-76, Method: Composition-based stats. Identities = 67/284 (23%), Positives = 119/284 (41%), Gaps = 15/284 (5%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTED-LTARVLDLASPIGRGQRGLIVAPP 180 KP +E P+ ++ M R + R +D +G+GQR I++ Sbjct: 120 GKPLAGGGHNFYETPIPVSHSAVNPMNRPRINKHIQTGVRAIDGLLTVGQGQRMAIMSGT 179 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFD 233 GK+ LL IA++ + V ++ LI ER EV + + L + +V +T D Sbjct: 180 GVGKSTLLSMIARNTNAD----VNVIALIGERRREVRDFIERDLGEEGLKRSILVVATSD 235 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDAN 292 + V+ A A+ + K+V+ ++DS+TR A A + + G+ T G + Sbjct: 236 DAPLLRVRAAYTATTIAEYFRDKGKNVMFMVDSVTRFALAQREIGLSRGEPPTTRGYTPS 295 Query: 293 ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 + GS+T L++ G +DE I + +G + + LSR +A + Sbjct: 296 VFSELAKLLERTG-TSSKGSITAFYNVLVE-GDDLDEPITDAVRGILDGHIVLSRDLANR 353 Query: 353 RVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 FPAID N+S +R + + + K+ E + Sbjct: 354 GHFPAIDVNKSISRIMNEVVSNMHKRAAREFLKMSADYNEAKEL 397 >UniRef50_D1B4Z7 Flagellar protein export ATPase FliI n=6 Tax=Campylobacterales RepID=D1B4Z7_SULD5 Length = 434 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 74/362 (20%), Positives = 141/362 (38%), Gaps = 40/362 (11%) Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 FGF+ D +++S + + G+ + G++ P F Sbjct: 71 FGFIEGFKIG-----DKVFISE---QGMMIPVGEELLGRVVDP----------------F 106 Query: 122 DKPENARNKILFENLTPLHANSRLRMERG-NGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 +P++ + I + + M+RG + + +D G+GQ+ I A Sbjct: 107 IRPKDGKGAIGARSSASIMKAPLDPMKRGLINEPFCVGVKTIDGLLTCGKGQKMGIFAGS 166 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR------LVKGEVVASTFDE 234 K+ L+ I + + +V LI ER EV E L ++ +T D+ Sbjct: 167 GVDKSTLMGMIVRGSEA----PIKVVALIGERGREVPEFIEKNLGGNLENTVIIVATSDD 222 Query: 235 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANA 293 A + A+ +DV+ ++DS+TR A A + A G+ T G + Sbjct: 223 SPLMRKYGAFSAMSVAEYFKNQGRDVLFMMDSVTRFAMAQREIGLALGEPPTSKGYPPSV 282 Query: 294 LHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKR 353 L + A E GS+T T L++ G + + I ++ + + + LSR++ + Sbjct: 283 LALLPQLMERAGKEEGKGSITAFFTVLVE-GDDLSDPIADQSRSILDGHIVLSRELTDYG 341 Query: 354 VFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFF 413 ++P I+ S +R + E + +++ + E E LI A K ND Sbjct: 342 IYPPINIQNSASRVMGDVIETEHKKAAMRFKRLNSILKEN---EVLIRIGAYEKGNDKEL 398 Query: 414 EM 415 ++ Sbjct: 399 DL 400 >UniRef50_P52607 Flagellum-specific ATP synthase n=21 Tax=Borrelia RepID=FLII_BORBU Length = 436 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 119/284 (41%), Gaps = 14/284 (4%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDL-TARVLDLASPIGRGQRGLIVAPP 180 +P + + L + L + R + L +VLD P+ +GQR I + Sbjct: 108 GRPIDNKGSFLNNSYKELIFEKINPINRSIFEDQILTGVKVLDGFLPVAKGQRVGIFSGS 167 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFD 233 GK+ LL IA++ + V ++ I ER E+ E +RL K +V ST D Sbjct: 168 GVGKSTLLGMIAKNSNAD----VNVIAFIGERGRELNEFIEHELGEERLKKSVLVVSTSD 223 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDAN 292 E + A + A+ E KDV +L DSITR A A + + G+ G + Sbjct: 224 ESPISRYKGAYVATMIAEYFREQGKDVALLFDSITRFANAKREMSLSLGEPPVAKGYPPS 283 Query: 293 ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 + GGS+T T L++ G E + + K + + L R + ++ Sbjct: 284 VFVEIPILLERSGFNGNGGSVTGFYTVLVE-GDDFTEPVADNIKAVLDGHIILDRDLFDR 342 Query: 353 RVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 ++P+I+ S +R + + E+ + + R ++ + + + Sbjct: 343 GIYPSINVLSSTSRSIHRIMSLEKQKLIMKARNLLSIYKDYEDL 386 >UniRef50_C7R0J8 ATPase, FliI/YscN family n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R0J8_JONDD Length = 446 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 77/328 (23%), Positives = 136/328 (41%), Gaps = 33/328 (10%) Query: 81 VSPSQIRRFN----LRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENL 136 + +Q+R + G + G++ P ++ P + + + Sbjct: 79 RAGAQVRHTGGGIRVPVGSGLLGRVIDPLG----------EPIDGLGPLTHVDFVDVDAA 128 Query: 137 TPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 196 P H +R R+ L RV+D + +GRGQR + A GK+ LL IA+ Sbjct: 129 AP-HPLARQRV----SEPLALGVRVMDTLTSVGRGQRMGLFAGSGVGKSTLLSMIARGTD 183 Query: 197 YNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEK 249 V ++ LI ER EV E + L + VV +T D+PA + A Sbjct: 184 AQ----VSVIALIGERGREVREFLEDDLGPEGLARSIVVIATSDQPALMRQRAAFTATRI 239 Query: 250 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVE 308 A+ L + DV++++DS+TR+A A + + G+ T G + A + E Sbjct: 240 AQWLAQMGNDVVLMMDSLTRVAMAQREIGLSVGEPPATRGYPPSTFSVLANLLERAGSAE 299 Query: 309 EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE 368 + G++T + T L+D G +E I + + + + L RK+A + +PAID S +R Sbjct: 300 Q-GTVTGLYTVLVD-GDDHNEPIADAARSILDGHVVLDRKLAVRGHYPAIDALASISRVA 357 Query: 369 ELLTTQEELQKMWILRKIIHPMGEIDAM 396 + LR+ + + + Sbjct: 358 SKVNDPANQAHADTLRRFMAAKAGVQDL 385 >UniRef50_C6N705 Flagellar protein export ATPase FliI n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N705_9GAMM Length = 430 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 66/284 (23%), Positives = 121/284 (42%), Gaps = 20/284 (7%) Query: 139 LHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 198 ++ +R+ + + +D P+G+GQR I A GK+ LL + Q++ Sbjct: 124 INPLTRMPI----NERLTTGIQAIDSLLPLGKGQRIGIFAGSGVGKSTLLGTMVQNLQSE 179 Query: 199 HPDCVLMVLLIDERPEEVTEMQ-------RLVKGEVVASTFDEPASRHVQVAEMVIEKAK 251 + ++ LI ER EV + L K +V S DE A Q A+ Sbjct: 180 ----INVIALIGERGREVNDFIVNHLDEATLKKSVLVVSCSDESALMRRQAVYTATAIAE 235 Query: 252 RLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEG 310 + K V++ +DSITR A A + + G+ T G + N +E Sbjct: 236 YFCQQSKQVMLFMDSITRFAMAQREISLSLGEPPTARGYTPSVFALLPGIIERTGNFKEQ 295 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEEL 370 GS++ + T L++ G +E + + + + + L+R++A++ +PAI +S +R + Sbjct: 296 GSISALYTVLVE-GDDFNEPLADHMRALLDGHIVLTRELAQRGHYPAISILQSVSRLAKH 354 Query: 371 LTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFE 414 + EE Q + +II + + LI A N+ + Sbjct: 355 IVAPEEQQLIN---QIIATLSLYQQNKDLIEVGAYKPGNNALLD 395 >UniRef50_D2TY23 Type III secretion cytoplasmic ATP synthase (YscN,SpaL,MxiB,HrcN,EscN) n=1 Tax=Arsenophonus nasoniae RepID=D2TY23_9ENTR Length = 457 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 64/268 (23%), Positives = 117/268 (43%), Gaps = 18/268 (6%) Query: 152 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 211 + +D +G GQR I A GK+ LL +A+ + V+++ L+ E Sbjct: 162 SEVLPTGIKAIDGILTLGVGQRIGIFAAAGGGKSTLLGMLARGCEAD----VVVLALVGE 217 Query: 212 RPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILL 264 R EV E K +V +T D P ++ + A+ + K V++L+ Sbjct: 218 RGREVREFLDNHLPATARKKTILVVATSDRPPLERMKASLTATTIAEYFRDQGKQVLLLV 277 Query: 265 DSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDT 323 DS+TR ARA + A+G+ G + A + GS++ I T L++ Sbjct: 278 DSLTRFARAAREIGLAAGEPPVANGFPPSVFVHMAALLERAG-PAKVGSISAIYTVLVE- 335 Query: 324 GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWIL 383 G M+E + +E + + + LSR++A FPAID N S +R + + ++ L Sbjct: 336 GDNMNEPVADEVRSILDGHIVLSRQLAAAGHFPAIDVNASVSRVMDNIVSKTHSLHARRL 395 Query: 384 RKIIHPMGEIDAMEFLINKLAMTKTNDD 411 R++ ++ L+ ++ ++ D Sbjct: 396 RQLRALFQDVQ----LLIRVGEYQSGQD 419 >UniRef50_A3SFS3 Flagellum-specific ATP synthase n=3 Tax=Rhodobacteraceae RepID=A3SFS3_9RHOB Length = 463 Score = 281 bits (719), Expect = 4e-74, Method: Composition-based stats. Identities = 77/273 (28%), Positives = 123/273 (45%), Gaps = 18/273 (6%) Query: 148 ERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207 + G + + +D+ +PI RGQR + A GK+ ++ +A++ + V+++ Sbjct: 137 RKKVGEKLETQIKCIDIFTPICRGQRMGVFAGSGVGKSTMMAMLARNTDAD----VIVIG 192 Query: 208 LIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260 LI ER EV + + + + VV ST DE Q A A+ K V Sbjct: 193 LIGERGREVQQFIQEDLGEEGMARAVVVVSTGDEAPLLRKQAALTTTAIAEYFKSTGKQV 252 Query: 261 IILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAAR-NVEEGGSLTIIAT 318 ++LLDS+TR A A + A G+ T G + A + G +T + T Sbjct: 253 LLLLDSVTRFAMAQREIGLARGEPPTLRGYPPSVFSELPHLLERAGPGMAAEGDITGLYT 312 Query: 319 ALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQ 378 L+D G M+E I + +G + L L R+IAE+ FPAID +S +R + EE + Sbjct: 313 VLVD-GDDMNEPIADAVRGIVDGHLVLDRRIAEQGRFPAIDLQKSLSRMLPGCHSPEEYE 371 Query: 379 KMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 411 + RK + + ME LI +L K D Sbjct: 372 ITKVARKALGRYAD---MEDLI-RLGAYKAGSD 400 >UniRef50_B0SE01 Endoflagellar biosynthesis/type III secretory pathway ATPase n=6 Tax=Leptospira RepID=B0SE01_LEPBA Length = 454 Score = 280 bits (718), Expect = 5e-74, Method: Composition-based stats. Identities = 70/287 (24%), Positives = 125/287 (43%), Gaps = 15/287 (5%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGST-EDLTARVLDLASPIGRGQRGLIVAPP 180 KP + + ++ + ++R + + R +D +GRGQR I + Sbjct: 118 GKPIDNKGILITKEERASEPRFLNPLDRPPITDILETGVRAIDGMLTVGRGQRIGIFSGS 177 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFD 233 GK+ LL IA+ + V +V LI ER EV E + L + V +T D Sbjct: 178 GVGKSSLLGMIARYTNAD----VNVVALIGERGREVNEFLHVELGKEALARSVVFVATSD 233 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDAN 292 V A + A+ E V + +DS+TR A A + G+ + T G ++ Sbjct: 234 SSKMEQVSCANLACSAAEYFREKGMSVNLYMDSLTRYAEALRELSI--GEPVVTKGYASS 291 Query: 293 ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 + + A GGS+T T L D MD+++ ++ +G + + L+RK+AE+ Sbjct: 292 VFSKMAKLVERAGTSHNGGSITGFYTVLTDAEDDMDDIVADKVRGFIDGHIVLTRKLAEQ 351 Query: 353 RVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 +PAID S +R + + ++ + I+R++I + + L Sbjct: 352 SHYPAIDVPASLSRLMQKIVNEDHYMRASIVRELISKYKNSEDIILL 398 >UniRef50_A1T0I0 ATPase, FliI/YscN family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T0I0_PSYIN Length = 436 Score = 280 bits (718), Expect = 5e-74, Method: Composition-based stats. Identities = 72/339 (21%), Positives = 147/339 (43%), Gaps = 23/339 (6%) Query: 96 TISGKIRPPKEGERYFA----LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN 151 + K+ P K+ E Y L +V + + ++ + + +T A + +++ Sbjct: 75 YVGSKVIPLKKTEHYHIDNSWLGRVLNAHGEAIDDLPSPRGIDTITLRSAEAINILKKKP 134 Query: 152 G-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 210 D+ + ++ + +GQR +VA GK++L+ I + + V++V LI Sbjct: 135 ISEPFDVGIKSINGLLTLAKGQRVGLVAGSGVGKSVLMGMITKFSEAD----VVVVGLIG 190 Query: 211 ERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 ER EV E + L K V+A+ D+ +Q E+ A+ + +V++L Sbjct: 191 ERNREVREFIEKNIGAEGLKKSVVIAAPADQSPLMRIQATELCHSVAEYYRDKGANVLLL 250 Query: 264 LDSITRLARAYNTVVPASGK-VLTGGVDANALHRPKRFFGAARN-VEEGGSLTIIATALI 321 +DS+TR A A V + G+ G + + N E G++T I T L Sbjct: 251 VDSLTRYAMAQREVAISLGELPAIKGYPPSVFSFIPPLLERSGNGHENAGTMTAIYTILS 310 Query: 322 DTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMW 381 + D + + K + + LS+++A++ FPA+D +S +R + + ++ LQ Sbjct: 311 EGDEDYD-PVVDTAKAILDGHIVLSKELAQRGQFPAVDIEKSISRCMDAVVSEPHLQIAR 369 Query: 382 ILRKIIHPMGEIDAMEFLINKLAMTKTND-DFFEMMKRS 419 +++ + LI + ND + E ++++ Sbjct: 370 QCKRLYSMYNKAKD---LIALGGYQQGNDPELDEAIQKN 405 >UniRef50_UPI00016C3500 Flagellar biosynthesis/type III secretory pathway ATPase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3500 Length = 430 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 79/307 (25%), Positives = 131/307 (42%), Gaps = 16/307 (5%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDL-TARVLDLASPIGRGQRGLIVAPP 180 +P + + + L P++ + MER + R +D G GQR I A Sbjct: 99 GRPLDGKGPLADCPLKPVNRPAPPAMERQRIREPFVTGIRAIDSVLTCGGGQRVGIFAGS 158 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFD 233 GK+ LL +A+ + V ++ LI ER EV + + + V+ +T + Sbjct: 159 GVGKSTLLGEVAKGSQAD----VNVIALIGERGREVAPFLEDVLGPEGMARSVVIVATCE 214 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDAN 292 + A V+ A+ I A ++V+ ++DS+TRLA A + G+ + G + Sbjct: 215 QTALMRVRAAQSAIAIADYFRSESQNVLFVIDSLTRLAMAQRELGLLLGEPPSSRGYTPS 274 Query: 293 ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 N GG +T + T L+D G MDE I + +G + + L RKIAE+ Sbjct: 275 VFQTLANTVERLGNAAVGG-ITALLTVLVD-GGDMDEPIADYVRGLVDGHIVLDRKIAER 332 Query: 353 RVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM-EFLINKLAMTKTNDD 411 +PAID +RS +R + +E + LR I+ +I M M D Sbjct: 333 GFYPAIDVSRSISRVATDVVDRESAKAARKLRAIMATHADIQDMLRIGAYTRGMDPQVDK 392 Query: 412 FFEMMKR 418 E+M + Sbjct: 393 ALELMPK 399 >UniRef50_P0A1C0 Probable ATP synthase spaL n=121 Tax=Proteobacteria RepID=SPAL_SALTI Length = 431 Score = 277 bits (710), Expect = 4e-73, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 122/286 (42%), Gaps = 17/286 (5%) Query: 131 ILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 190 + E A G R +D G GQR I A GKTML+ Sbjct: 112 PISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHM 171 Query: 191 IAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-------EVVASTFDEPASRHVQVA 243 + + + V ++ LI ER EVTE +++ +V +T D P+ A Sbjct: 172 LIEQTEAD----VFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAA 227 Query: 244 EMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGVDANALHRPKRFFG 302 ++ A+ + K V++ +DS+TR ARA V ASG+ G A+ R Sbjct: 228 QLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLE 287 Query: 303 AARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 362 E GS+T T L+++ + D + +E + + L+LSRK+A + +PAID + Sbjct: 288 RPGATSE-GSITAFYTVLLESEEEAD-PMADEIRSILDGHLYLSRKLAGQGHYPAIDVLK 345 Query: 363 SGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKT 408 S +R +TT ++ +RK++ + + ++ I+ Sbjct: 346 SVSRVFGQVTTPTHAEQASAVRKLMTRL---EELQLFIDLGEYRPG 388 >UniRef50_A3V245 FliI, Flagellum-specific ATPase n=4 Tax=Rhodobacterales RepID=A3V245_9RHOB Length = 444 Score = 277 bits (709), Expect = 6e-73, Method: Composition-based stats. Identities = 68/294 (23%), Positives = 124/294 (42%), Gaps = 17/294 (5%) Query: 118 EVNFDK-PENARNKILFENLTPLHANSRLRM-ERGNGSTEDLTARVLDLASPIGRGQRGL 175 V+ P + PL+ + R D+ R ++ IG GQR Sbjct: 108 TVDGLGWPLDDAPAPQVSAQAPLNGTLVNPLARRQIPGPLDVGVRAVNGLLTIGCGQRIG 167 Query: 176 IVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV-------KGEVV 228 I+A GK++LL +A+ + + V+++ LI ER EV EM R + K ++ Sbjct: 168 IIAGSGVGKSVLLGMMARYTSAD----VVVIGLIGERAREVGEMVRAIMQPATRGKVSII 223 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTG 287 A D ++ A A+ + K+V++++DS+TR+A A + A G+ + Sbjct: 224 AVPADRSPLLRIRGARRATALAEHFRDQGKNVLLIMDSLTRVAHAQREIGLALGEAPTSK 283 Query: 288 GVDANALHRPKRFFGAARN--VEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 G A+ + A GS+T I T L D G ++ + + + + + L Sbjct: 284 GYPASVISMIPNLIERAGMGVGPNAGSITGIYTVLAD-GDDSNDPVVDTARAILDGHIVL 342 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 SR IA+ V+PAID S +R + + + ++++ E + + Sbjct: 343 SRSIAQMGVYPAIDIPASISRVMNDIVPLSQQKAARKFKRLVSLYNENRDLMLM 396 >UniRef50_Q058C4 Flagellum-specific ATP synthase n=2 Tax=cellular organisms RepID=Q058C4_BUCCC Length = 457 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 61/286 (21%), Positives = 118/286 (41%), Gaps = 20/286 (6%) Query: 138 PLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 197 P++ +R + D ++ +GRGQR I + GK+MLL I++ Sbjct: 148 PINPLNRKPI----TEILDTGVCAINSLLTVGRGQRMGIFSQAGIGKSMLLGMISRHTDA 203 Query: 198 NHPDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKA 250 + +++V L+ ER EV + + K V+ S+ D +Q E A Sbjct: 204 D----IIVVSLVGERGREVKDFIDNILGKDSLKKSVVIVSSADVSPMFKIQSVEYATAVA 259 Query: 251 KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEE- 309 + +V++++DS+TR A AY V + ++ A+ N++ Sbjct: 260 EYFCNKGNNVLLIVDSLTRYAMAYREVSNSLYEIPVKRYPASIFSNIPYLIERTGNIDNK 319 Query: 310 GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE 369 GS+T T L + G + ++ I + K + + LS ++E +PAI+ +S +R Sbjct: 320 SGSITSFYTILTE-GDEYNDPILDITKSVLDGHIILSNVLSESGHYPAINIEKSISRLMS 378 Query: 370 LLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEM 415 + + Q ++K+I + +IN T + + Sbjct: 379 SIVDHDHYQYSIYIKKLISCYYKN---YDIINLGVYTSGKNKLLDQ 421 >UniRef50_C1F987 Flagellar protein export ATPase FliI n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F987_ACIC5 Length = 450 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 70/316 (22%), Positives = 128/316 (40%), Gaps = 16/316 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 +R GDT++ P + +V + A + + L PL ++R Sbjct: 88 GIRYGDTVAALGVQPSIDVGEGLIGRVLNALGQPLDRAGSLRATDAL-PLERAVPHPLDR 146 Query: 150 GNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 R +D +GRGQR I GK+ L+ + ++ + V++V L Sbjct: 147 TPIRMPLGTGIRAIDSMLTVGRGQRVGIFGGSGVGKSTLIGMMTRNSDAD----VIVVGL 202 Query: 209 IDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 + ER EV E + + VV ST D+ ++ A A+ + K V+ Sbjct: 203 VGERGREVGEFLEDSLGPEGRKRSVVVVSTSDQTPLLRMRAALAATTVAEYFADQGKHVL 262 Query: 262 ILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 ++LDS+TR A A V A+G+ T G + R + A E GS+T T L Sbjct: 263 LVLDSLTRFAMAAREVGLAAGEPPTAKGYTPSVFSRLAQLVERAGQFRE-GSITAFYTVL 321 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 ++ G + + + + + + LSR +A + +P I+ S +R + + E Sbjct: 322 ME-GDDQQDTLVDAVRSYLDGHVVLSRTLASQGWYPPIELLDSISRLMPSVASGEHRGAA 380 Query: 381 WILRKIIHPMGEIDAM 396 +R+++ + + Sbjct: 381 ATVRRMLAAYARSEDL 396 >UniRef50_Q6AGA5 Flagellum-like ATP synthase n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AGA5_LEIXX Length = 441 Score = 275 bits (703), Expect = 3e-72, Method: Composition-based stats. Identities = 82/322 (25%), Positives = 136/322 (42%), Gaps = 34/322 (10%) Query: 88 RFNLR-----TGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHAN 142 RF LR TG + G++ ++ P +A + + +N P + Sbjct: 85 RFALRPPTVPTGRGLLGRVINGLGH----------PIDGKGPLDATSCLPLDNAVP-NPL 133 Query: 143 SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC 202 R R++ L R LD P+GRGQR + A GK+ LL IA+ + Sbjct: 134 DRARIDT----PLPLGVRALDTLIPVGRGQRLGLFAGSGVGKSSLLSMIARGTDAD---- 185 Query: 203 VLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 V ++ LI ER EV E L + VV +T DEPA + A A+ + Sbjct: 186 VFVLALIGERGREVREFLEDDLGADGLARSVVVVATSDEPALMRRRAAFAATRIAESFRD 245 Query: 256 HKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLT 314 + D ++++DS+TR+A A + ++G+ T G ++ A + GS+T Sbjct: 246 NGADAMLMMDSLTRVAMAQREIGLSAGEPPATRGYPSSTFSTLASLLERAGTAKT-GSIT 304 Query: 315 IIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQ 374 + T L+D G +E I + + + + L RK+A FP+ID S +R + T Sbjct: 305 GLYTVLVD-GDDHNEPIADAARSILDGHVLLDRKLAINGHFPSIDVLGSISRLAGKICTP 363 Query: 375 EELQKMWILRKIIHPMGEIDAM 396 + LRK++ + Sbjct: 364 GQQAAATALRKVMAARRAAQDL 385 >UniRef50_C5CYE4 ATPase, FliI/YscN family n=1 Tax=Variovorax paradoxus S110 RepID=C5CYE4_VARPS Length = 460 Score = 274 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 72/310 (23%), Positives = 133/310 (42%), Gaps = 18/310 (5%) Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGST-EDLTARVLDLASPIGRGQRGLIVAP 179 F +P + K + PL A M+R + R +D +G+GQR I A Sbjct: 116 FGEPLDGLPKPVAIQRRPLKAAPINPMQRPPIRRILETGVRAIDGLLTLGQGQRIGIFAG 175 Query: 180 PKAGKTMLLQNIAQSIAY----NHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVV 228 GK+ LL +A+ + + + ++ LI ER EV E + L + VV Sbjct: 176 SGVGKSTLLGLLARHVKAQGGADGSGGINVIALIGERGREVREFIEKQLGPEGLARSVVV 235 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-G 287 +T D+PA ++ A + A+ + ++V++ +DSITR A A V ++G+ T Sbjct: 236 VATSDQPALARLRAAYAALSIAEYFRDEGRNVLLTMDSITRFAMARREVGLSAGEPPTAR 295 Query: 288 GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSR 347 G + GGS+T + T L++ G ++E + + + + + LSR Sbjct: 296 GYTPSVFAELPELCERCGMAPGGGSITALLTVLVE-GDDLNEPVSDALRAILDGHIVLSR 354 Query: 348 KIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK 407 ++A + +PAID +S +R L + + + + ++ +I+ A K Sbjct: 355 QLAHRGHYPAIDVLKSVSRLMPELADEAQRSLAVA---AMQHLAVLERNRQMIDIGAYEK 411 Query: 408 T-NDDFFEMM 416 N + + Sbjct: 412 GANAELDRAI 421 >UniRef50_O34171 Flagellum-specific ATP synthase n=19 Tax=Alphaproteobacteria RepID=FLII_AGRT5 Length = 473 Score = 274 bits (700), Expect = 6e-72, Method: Composition-based stats. Identities = 67/293 (22%), Positives = 124/293 (42%), Gaps = 21/293 (7%) Query: 117 NEVNFDKP--ENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRG 174 ++ P + + N P R+ + R +D+ SP+ GQR Sbjct: 130 EPIDGQGPLASGIVRRSISNNAPPSMTRKRV------ETPFKTGVRAIDIFSPLCLGQRL 183 Query: 175 LIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR------LVKGEVV 228 I A GK+ LL +A++ A++ +++ L+ ER EV E + K V Sbjct: 184 GIFAGSGVGKSTLLSMLAKADAFDK----VVIALVGERGREVREFIEDTMGDNMSKSVAV 239 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-G 287 +T DE + A+ + +V++++DS+TR A A V ASG+ Sbjct: 240 VATSDESPMLRKMAPLSAVTIAEHFRDQGDNVLLIIDSVTRFAHAIREVAVASGEPPVAR 299 Query: 288 GVDANALHRPKRFFGAAR-NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 G A+ R A E G++T I + L+D G ++ I + +G + + L Sbjct: 300 GYPASVFTELPRLLERAGPGAEGTGTITAIVSILVD-GDNHNDPIADSTRGILDGHIVLD 358 Query: 347 RKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 R +AE+ +P I+ S +R + T ++ + + L+ ++H E + + Sbjct: 359 RSLAEEGRYPPINPLASISRLAKKAWTPDQEKLVSRLKALVHRFEETRDLRLI 411 >UniRef50_A1WUC0 Flagellar protein export ATPase FliI n=15 Tax=Bacteria RepID=A1WUC0_HALHL Length = 449 Score = 273 bits (698), Expect = 9e-72, Method: Composition-based stats. Identities = 71/272 (26%), Positives = 118/272 (43%), Gaps = 15/272 (5%) Query: 135 NLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 193 TPL A +ER + D+ R ++ +GRGQR + A GK++LL + + Sbjct: 129 ERTPLMAEPINPLERAPIAAPLDVGVRSINALFTVGRGQRMGLFAGSGVGKSVLLGMMTR 188 Query: 194 SIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-------EVVASTFDEPASRHVQVAEMV 246 + V++V LI ER EV E + G VVA+ D + A Sbjct: 189 YTTAD----VVVVGLIGERGREVREFITEILGRHGLARAVVVAAPADTSPLFRLHGAMRA 244 Query: 247 IEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAAR 305 A+ + +V++L+DS+TR A+A + A G+ T G + R A Sbjct: 245 TSIAEYFRDQGYNVLLLMDSLTRYAQAQREIGLAIGEPPTTKGYPPSVFGLLPRLVERAG 304 Query: 306 N-VEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 N + GGS+T T L++ G E I + + + L LSR +A+ V+PA+D S Sbjct: 305 NGPDGGGSITAFYTVLVE-GDDQQEPIADSARAILDGHLVLSRSLADSGVYPAVDVEASI 363 Query: 365 TRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 +R +T + R++ + + + Sbjct: 364 SRAMMAITEGRHQKAAQRFRELYAAYRQNEDL 395 >UniRef50_D2BZ50 Type III secretion apparatus H+-transporting two-sector ATPase n=8 Tax=Gammaproteobacteria RepID=D2BZ50_DICD5 Length = 460 Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats. Identities = 75/303 (24%), Positives = 131/303 (43%), Gaps = 23/303 (7%) Query: 134 ENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIA 192 P+ ++ ER S R +D IG GQR I A GKT LL +A Sbjct: 141 SPPMPVIGDAPPPTERPRIASPLPTGLRAIDGLLTIGCGQRVGIFAGAGCGKTTLLAELA 200 Query: 193 QSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEM 245 + N P ++ LI ER E+ E Q + +V ST D + + A Sbjct: 201 R----NTPCDAIVFGLIGERGRELREFLDHELDAQLRSRTVLVCSTSDRSSMERARAAFT 256 Query: 246 VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAA 304 A+ K V++++DS+TR ARA + A G+ GG+ + R A Sbjct: 257 ATAIAEAFRATGKQVLLIIDSLTRFARAQREIGLALGEPQGRGGLPPSVYTLLPRLVERA 316 Query: 305 RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 G++T + + LI+ S M++ + +E + + + LSR++AE+ +PAID S Sbjct: 317 GQT-RQGAITALYSVLIEQDS-MNDPVADEVRSLIDGHIVLSRRLAERNHYPAIDVLMSL 374 Query: 365 TRKEELLTTQEELQKMWILRKIIHPMGEIDAM----EFLINKLAMT----KTNDDFFEMM 416 +R + E + +R+++ +++ + E+ A+T NDD + Sbjct: 375 SRTMSNVVDTEHTRNANAVRRLMAAYKQVEMLIRLGEYQPGHDALTDAAVNANDDINRFL 434 Query: 417 KRS 419 +++ Sbjct: 435 QQA 437 >UniRef50_O67531 Flagellum-specific ATP synthase n=3 Tax=Aquificaceae RepID=FLII_AQUAE Length = 443 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 82/317 (25%), Positives = 133/317 (41%), Gaps = 16/317 (5%) Query: 89 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRME 148 F LR GD + K + KV + + + I F L + Sbjct: 81 FGLRKGDKVLLKNELVSTKTGNGVVGKVVDPFGNPLDGGF--IGFVEEKGLELPQINPLY 138 Query: 149 RGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207 R D R ++ +G+GQ+ I A GK+ LL I + + V+++ Sbjct: 139 RERIREVFDTGVRSVNALFTLGKGQKIGIFAGAGVGKSTLLGMITRHSKAD----VVVLA 194 Query: 208 LIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260 LI ER EV E + L K VV ST D+ V+ A + A KDV Sbjct: 195 LIGERGREVKEFLEEVLGEEGLKKSVVVVSTADQSPILKVKGAISAVVHAHHFASQGKDV 254 Query: 261 IILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATA 319 ++L+DSITRLA A + A+G+ T G + R + + GS+T I T Sbjct: 255 LLLMDSITRLALAQREIGLAAGEPPTLKGFTPSVFQLLTRIAESCGAF-KKGSITGIFTV 313 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK 379 L++ + I + G + + LSRK A + +FPA+D RS +R L ++E K Sbjct: 314 LVEGDDISLDPIADSLMGVLDGHIILSRKRAVRGLFPAVDPVRSLSRLMPKLVSEEHFMK 373 Query: 380 MWILRKIIHPMGEIDAM 396 ++++ +++ + Sbjct: 374 ANFFKEVLSKFEDVEEL 390 >UniRef50_B3Q296 Type III secretion system ATP synthase protein n=5 Tax=Rhizobium/Agrobacterium group RepID=B3Q296_RHIE6 Length = 439 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 76/286 (26%), Positives = 118/286 (41%), Gaps = 15/286 (5%) Query: 120 NFDKPENARNKILFENLTPLHANSRLRM-ERGNGSTEDLTARVLDLASPIGRGQRGLIVA 178 N +P L PL+ + R LD G+GQR I Sbjct: 110 NVLRPSANPAGEDARFLQPLYGQPVNPLSRRPIRQPFTSGIAALDGLLTCGQGQRIGIFG 169 Query: 179 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE-------VVAST 231 P AGK+ L+ I N+ V++ L+ ER EV E E +V +T Sbjct: 170 APGAGKSTLVSQIV----ANNKADVIVCALVGERGREVGEFVAGNMPEGVPSNVTLVVAT 225 Query: 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVD 290 D PA + A+ E K V++++DS+TR+ARA V A+G+ G Sbjct: 226 SDRPALERFKAVMTATAIAEYFREQGKHVLLVIDSVTRMARALREVGLAAGEPPVRRGFP 285 Query: 291 ANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA 350 + + F A N G +T T L++ G + D+ I EE + + + LS KIA Sbjct: 286 PSVFAVLPQIFERAGNSAN-GMMTAFYTVLVE-GEEQDDPIAEETRSLLDGHIVLSDKIA 343 Query: 351 EKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 + FPAID S +R + ++ Q LR ++ E++ + Sbjct: 344 KAGNFPAIDVLASRSRTMSAVVSESHRQAADRLRALLALYDEVELL 389 >UniRef50_A6GN32 Type III secretion protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GN32_9BURK Length = 461 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 75/291 (25%), Positives = 129/291 (44%), Gaps = 16/291 (5%) Query: 120 NFDKPENARNKILF--ENLTPLHANSRLRMERGNGSTEDLT-ARVLDLASPIGRGQRGLI 176 N D P + R+ +L + P+ + +R S +T RV+D +G GQR I Sbjct: 118 NLDHPNDRRSGVLSVDSDARPVIQVAPPASKRPPVSESLVTKVRVIDGLLTLGIGQRVGI 177 Query: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVA 229 APP GK+ L+ I + + ++ L+ ER E+ E K V Sbjct: 178 FAPPGCGKSTLMAQIVRGANVDA----VVFGLVGERGRELREFIEKEITDEIRKKSFFVC 233 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GG 288 +T D A V+ A A+ L + K V++++DS+TRLARA + +G+ T G Sbjct: 234 ATSDRSAIERVRAAFTATSIAEYLRDQGKSVLLVVDSLTRLARAQRELGLMAGEPATQAG 293 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 + + E+ G +T + T L++ D+ I E K + + LS K Sbjct: 294 FTPSVYSILPELIERSGRTEQ-GDITAVFTVLMEGERIEDDPIASEAKSLLDGHIVLSTK 352 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 + E+ FPAID +S +R +T+ + + ++R+ E++ + L Sbjct: 353 LVERSHFPAIDPLKSLSRVMGSVTSVKTQELASLVRRAYSLYQEVELLIRL 403 >UniRef50_C3KNB0 Type III secretion component, RhcN, ATP synthase n=3 Tax=Bacteria RepID=C3KNB0_RHISN Length = 448 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 77/298 (25%), Positives = 128/298 (42%), Gaps = 19/298 (6%) Query: 125 ENARNKILFENLTPLHANSRLRMERG-NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAG 183 + ++ + P H + R L R +D + RGQR I P G Sbjct: 124 DERAIPVVTDTYYPTHRPPPHALRRDLITEPLQLGIRAIDGLLTVARGQRVGIFGEPGVG 183 Query: 184 KTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPA 236 K+ LL I + + V+++ LI ER EV E + + VV +T D PA Sbjct: 184 KSSLLSAIVRGTKAD----VIVIGLIGERGREVREFIEGQLGEEGRRRSVVVVATSDRPA 239 Query: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALH 295 V+ A A+ + ++DV++L+DS+TR ARA + A+G+ T G + Sbjct: 240 IERVKAAYAATAIAEYFRDQRRDVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSLFA 299 Query: 296 RPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVF 355 R A +GGS+T + T L + +D + EE K + + LS +AE+ F Sbjct: 300 ALPRLLERAG-PGQGGSITALYTVLTEGDGTLD-PVAEETKAILDGHIMLSSALAERNFF 357 Query: 356 PAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFF 413 PAID +S +R E + + +R ++ EI+ L+ ++ + D Sbjct: 358 PAIDILKSRSRLMETVAGRTHRDHAARIRTLLARYEEIE----LLLRVGEYERGADAL 411 >UniRef50_Q1GNY4 ATPase FliI/YscN n=3 Tax=Bacteria RepID=Q1GNY4_SPHAL Length = 443 Score = 267 bits (684), Expect = 4e-70, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 120/288 (41%), Gaps = 15/288 (5%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGST-EDLTARVLDLASPIGRGQRGLIVAPP 180 P + R I + PL + RG + ++ R ++ +G GQR I+A Sbjct: 113 GNPLDGRPAIKSQFQWPLAGRKVNPLRRGRVTRALNMGVRAINGLLTVGEGQRVAIIAGS 172 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFD 233 GK++L+ + + V++V LI ER EV++ K VVA D Sbjct: 173 GVGKSVLMGQMIAGTECD----VIVVGLIGERSREVSDFVETKLPPDVRKKSVVVAVPAD 228 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDAN 292 P ++ A A+ K V++L+DS+TR+A A + G+ T G + Sbjct: 229 HPPLLRLRAAMRATAIAEAFRAEGKKVLLLIDSLTRVAHAQREIGLTLGEPPTMKGYPPS 288 Query: 293 ALHRPKRFFGAARNVE-EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 A + GGS+T + T L D G +D+ + + + + + LSR++AE Sbjct: 289 VFALIPSLCERAGIDKATGGSVTALYTVLAD-GGDIDDPVVDSARAIVDGHIILSRQLAE 347 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 + V+PAID RS +R + R++ E + + Sbjct: 348 QGVYPAIDVARSLSRTMADSVDADHAAAAARFRQLWSLYEENRDLMLM 395 >UniRef50_P52612 Flagellum-specific ATP synthase n=269 Tax=Proteobacteria RepID=FLII_ECOLI Length = 457 Score = 267 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 63/285 (22%), Positives = 115/285 (40%), Gaps = 15/285 (5%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGST-EDLTARVLDLASPIGRGQRGLIVAPP 180 KP + L ++R D R ++ +GRGQR + A Sbjct: 125 GKPLDGLPSPDTTETGALITPPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGS 184 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFD 233 GK++LL +A+ + V++V LI ER EV + + + V+A+ D Sbjct: 185 GVGKSVLLGMMARYTRAD----VIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPAD 240 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDAN 292 +Q A A+ + + V++++DS+TR A A + A G+ T G + Sbjct: 241 VSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPS 300 Query: 293 ALHRPKRFFGAARNVEEGGSL-TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 + A N GG T T L + G + I + + + + LSR++AE Sbjct: 301 VFAKLPALVERAGNGISGGGSITAFYTVLTE-GDDQQDPIADSARAILDGHIVLSRRLAE 359 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 +PAID S +R L +++ ++ ++++ + Sbjct: 360 AGHYPAIDIEASISRAMTALISEQHYARVRTFKQLLSSFQRNRDL 404 >UniRef50_Q141X8 ATPase FliI/YscN n=11 Tax=Proteobacteria RepID=Q141X8_BURXL Length = 444 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 75/274 (27%), Positives = 120/274 (43%), Gaps = 17/274 (6%) Query: 145 LRMERGNGSTE-DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 203 +ER +T R +D G GQR I AP GK+ ++ IA + + Sbjct: 136 NPLERPVIATPFATGVRAIDGLLTCGVGQRTGIFAPAGGGKSTIMGMIANGASTDA---- 191 Query: 204 LMVLLIDERPEEVTEM------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK 257 ++V LI ER EV E +R V+A+T D PA+ ++ AE+ + A L Sbjct: 192 IVVALIGERGREVAEFIHDHLERRRASTIVIAATSDRPAAERIKAAELASQVAVGLRASG 251 Query: 258 KDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTII 316 ++V++L DS+TR ARA + A G+ GG + + R AA V GS+T Sbjct: 252 RNVLLLFDSLTRYARALRELGLAVGEPPLRGGFPPSVFAQLPRLIEAAG-VTAQGSITAF 310 Query: 317 ATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEE 376 T L D + + + + EE + + + LS K+ +PAID RS +R + Sbjct: 311 YTVLAD-EADLSDPVAEEARSLLDGHIQLSSKLGAAGHYPAIDILRSRSRLMTRVAAAVH 369 Query: 377 LQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 +R + + +E L+ + ND Sbjct: 370 QADANRVRDWLARY---EDVELLLQIGEYQRGND 400 >UniRef50_Q2NVI5 Type III secretion apparatus SpaL/InvC n=11 Tax=Proteobacteria RepID=Q2NVI5_SODGM Length = 435 Score = 263 bits (673), Expect = 9e-69, Method: Composition-based stats. Identities = 71/291 (24%), Positives = 126/291 (43%), Gaps = 16/291 (5%) Query: 134 ENLTPLHANSRLRMERGNGSTEDLT-ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIA 192 P+ + ER + + +T R +D G GQR I A GKT L+ + Sbjct: 120 TEHRPIDVEALHFSEREPIAEKLITRIRAIDGLLTCGHGQRLGIFAAAGCGKTSLMNMLI 179 Query: 193 QSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEM 245 + + V +V LI ER EVTE R K +V ST D + A++ Sbjct: 180 EHSEAD----VYVVGLIGERGREVTEFIEELKHSSRSGKVVLVNSTSDRSSVERCNAAQV 235 Query: 246 VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGVDANALHRPKRFFGAA 304 A+ + K+V++ +DSITR ARA + + G+ G A+ R + Sbjct: 236 ATTVAEYFRDQGKNVLLFIDSITRYARALRDMALSMGELPARRGYPASVFERLPKLLERP 295 Query: 305 RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 + GS+T T L++ + D I +E + + ++LS +A + +PAID RS Sbjct: 296 G-SSQLGSITAFYTVLLENEEEPDA-IGDEVRSILDGHIYLSHTLAAQGHYPAIDILRST 353 Query: 365 TRKEELLTTQEELQKMWILRKIIHPMGEIDA-MEFLINKLAMTKTNDDFFE 414 +R +T +++ + R ++ ++ ++ + + ND+ F+ Sbjct: 354 SRLFLQITDKQQQRAAVRFRDLLVRQRDMQLYLDLGEYRRGENQENDNAFD 404 >UniRef50_C6DIX7 Type III secretion apparatus H+-transporting two-sector ATPase n=13 Tax=Gammaproteobacteria RepID=C6DIX7_PECCP Length = 455 Score = 260 bits (666), Expect = 6e-68, Method: Composition-based stats. Identities = 66/271 (24%), Positives = 122/271 (45%), Gaps = 15/271 (5%) Query: 138 PLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 196 P+ ++ R S R +D IG+GQR I A GKT LL +A+ Sbjct: 141 PVLGDAPPPTSRPRISQPLPTGLRAVDGLLTIGQGQRVGIFAGAGCGKTTLLAELAR--- 197 Query: 197 YNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEK 249 N P ++ LI ER E+ E + + +V ST D + + A Sbjct: 198 -NTPCDAIVFGLIGERGRELREFLDHELDDELRSRTVLVCSTSDRSSMERARAAFTATAI 256 Query: 250 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVE 308 A+ + V++++DS+TR ARA + A G+ GG+ + R A E Sbjct: 257 AEAYRAEGRQVLLIIDSLTRFARAQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQTE 316 Query: 309 EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE 368 + G++T + + LI+ S M++ + +E + + + L+R++AE+ +PAID S +R Sbjct: 317 D-GAITALYSVLIEQDS-MNDPVADEVRSLIDGHIVLARRLAEQGHYPAIDVLASLSRTM 374 Query: 369 ELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 + + + +R+++ +++ + L Sbjct: 375 SNVVDTDHTRNAGGVRRLMAAYKQVEMLIRL 405 >UniRef50_Q52371 Type III secretion ATP synthase hrcN n=14 Tax=Pseudomonas RepID=HRCN_PSESY Length = 449 Score = 260 bits (664), Expect = 8e-68, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 133/283 (46%), Gaps = 19/283 (6%) Query: 138 PLHANSRLRMERGNGST-EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 196 P+ A++ +R + R +D A +G GQR + A GKT L+ +A+++ Sbjct: 134 PVIADALPPTQRPRITRALPTGIRAIDSAILLGEGQRVGLFAGAGCGKTTLMAELARNMD 193 Query: 197 YNHPDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEK 249 + V++ LI ER E+ E + +V +T D + + A Sbjct: 194 CD----VIVFGLIGERGRELREFLDHELDETLRRRSVLVCATSDRSSMERARAAFTATAI 249 Query: 250 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVE 308 A+ + V++LLDS+TR ARA + ASG+ L GG+ + R A E Sbjct: 250 AEAFRARGQKVLLLLDSLTRFARAQREIGIASGEPLGRGGLPPSVYTLLPRLVERAGMSE 309 Query: 309 EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE 368 GS+T + T LI+ S M++ + +E + + + LSRK+AE+ +PAID + S +R Sbjct: 310 N-GSITALYTVLIEQDS-MNDPVADEVRSLLDGHIVLSRKLAERGHYPAIDVSASISRIL 367 Query: 369 ELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 411 +T ++ + LR+++ +++ ++ +L + D Sbjct: 368 SNVTGRKHQRANNRLRQLLAAYKQVE----MLLRLGEYQAGAD 406 >UniRef50_A1UTV1 Flagellum-specific ATP synthase n=55 Tax=Alphaproteobacteria RepID=A1UTV1_BARBK Length = 537 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 125/294 (42%), Gaps = 14/294 (4%) Query: 115 KVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQR 173 +V + + +L + + A++ + R G+ +V+D+ +P+ GQR Sbjct: 201 RVVNAFGEAIDGKGALLLGSSPMAVEAHAPPALARARVGNGLRTGVKVIDIFTPLCFGQR 260 Query: 174 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM------QRLVKGEV 227 I + GK+ LL + Q+ ++ +++ L ER EV +M +L K Sbjct: 261 IGIFSGSGVGKSTLLSMMMQADHFDK----VVLALTGERGREVRDMLDDTLQDKLDKVVA 316 Query: 228 VASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-T 286 V +T DE M A+ +V++++DSITR A A + ++ + + Sbjct: 317 VIATSDESPMMRRLAPIMATTIAEYFSSLGDNVLLVVDSITRYALAVREIAISAHEPPVS 376 Query: 287 GGVDANALHRPKRFFGAARNVEEG-GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 G R A +G GS+T + L+D G ++ I + +G + + L Sbjct: 377 RGFPPRVFSELPRLLERAGPGRKGKGSITGVYAVLVD-GDDHNDPIADAIRGILDGHIVL 435 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 R IA + FPA+D + S +R T E+ + L+++I E + + Sbjct: 436 DRAIAAQGRFPAVDISSSISRLASHSWTGEQRILVQSLKEMIFRYEETRDLRAM 489 >UniRef50_B8H363 Flagellum-specific ATP synthase n=5 Tax=Alphaproteobacteria RepID=FLII_CAUCN Length = 444 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 68/259 (26%), Positives = 118/259 (45%), Gaps = 19/259 (7%) Query: 152 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 211 G DL R +++ + RGQR I A GK++LL +A+ + ++V LI E Sbjct: 138 GERLDLGVRSMNVFTTTCRGQRLGIFAGSGVGKSVLLSMLAKEATCDA----VVVGLIGE 193 Query: 212 RPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILL 264 R EV E + L + VV +T DEPA Q A M + ++ + + ++V+ L+ Sbjct: 194 RGREVREFVEETLGEEGLRRAVVVVATSDEPALTRRQAAYMTLAISEFMRDQDQEVLCLM 253 Query: 265 DSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAA--RNVEEGGS----LTIIA 317 DS+TR A A + A+G+ T G + A + G+ +T + Sbjct: 254 DSVTRFAMAQREIGLAAGEPPTTKGYTPTVFTELPKLLERAGPGPIRPDGTTAAPITALF 313 Query: 318 TALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEEL 377 T L+D G +E I + +G + + + R IAE+ FPAI+ +S +R E Sbjct: 314 TVLVD-GDDHNEPIADATRGILDGHIVMERAIAERGRFPAINVLKSISRTMPGCQHPHER 372 Query: 378 QKMWILRKIIHPMGEIDAM 396 + R+++ ++ + Sbjct: 373 DIVKGARQVMSAYSNMEEL 391 >UniRef50_Q12T73 ATPase FliI/YscN n=1 Tax=Shewanella denitrificans OS217 RepID=Q12T73_SHEDO Length = 436 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 12/288 (4%) Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLT-ARVLDLASPIGRGQRGLIVAP 179 F +P + + + + A+ + R T + LD PIG+GQR I+A Sbjct: 104 FGQPLDEQELGVVQTQCVFLASHINPLTRAAIDEPLTTRIKALDSFIPIGKGQRVGILAG 163 Query: 180 PKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTF 232 GK+ LL ++ S A + V++++L+ ER EV E + + +VA+T Sbjct: 164 SGVGKSTLLAMMSDSCAQQNA--VIVIVLVGERGREVEEFVNGKMFKRLRSRAVLVAATA 221 Query: 233 DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDA 291 +E V + + A+ L K+VI ++DS+TR+A A + A G+ T G Sbjct: 222 EEMPVTRVLAVKYGLALAESLSAEGKEVIFVVDSLTRVAMAQREIGLAIGEPPTAKGYTP 281 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 + +R S+T + + L++T D+ I + + + + L R +AE Sbjct: 282 SVFSLLQRIVERCGAFRHRASITALFSVLVET-DDFDDPIVDTLRAVLDGHIVLDRALAE 340 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 + FPAID RS +R L ++++ R ++ + M L Sbjct: 341 QGHFPAIDVLRSVSRLTTNLFDAKKIKLSRAGRILLSEYKQKKMMIDL 388 >UniRef50_A8LMQ4 Flagellum-specific ATP synthase n=32 Tax=Rhodobacterales RepID=A8LMQ4_DINSH Length = 450 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 73/286 (25%), Positives = 123/286 (43%), Gaps = 18/286 (6%) Query: 135 NLTPLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 193 PL + R G + V + P+ RGQR + A GK+ LL + + Sbjct: 122 TAYPLRGTPPSAITRKPLGHRLETGTAVFNTFLPLVRGQRLGLFAGSGVGKSTLLGKLTR 181 Query: 194 SIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMV 246 S+ + + +V LI ER EV E + + VVA+T D+ + A + Sbjct: 182 SVQAD----IAVVALIGERGREVREFVDRTLGADGMKRAIVVAATSDQAPLLKRRAAWLA 237 Query: 247 IEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAAR 305 + A+ + V+ L DS+TR A A+ V +G+ + G + A Sbjct: 238 MSIAEYFRDLGGHVLFLTDSVTRFAEAHREVALTAGEAPSMRGFPPSTGQMIMDLAERAG 297 Query: 306 -NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 E G +T I + L+ GS MDE + + +G + + LSR+IAE+ FPA+D +S Sbjct: 298 PGPEGKGDITGIFSVLV-AGSDMDEPVADILRGVLDGHVVLSREIAERGRFPAVDVLQSV 356 Query: 365 TRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 +R + E + + + R+ MG + +I T+ +D Sbjct: 357 SRSLPDAASAAENELLQLARR---TMGIYERSRLMIQSGLYTQGSD 399 >UniRef50_B1TCL2 ATPase, FliI/YscN family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TCL2_9BURK Length = 443 Score = 250 bits (639), Expect = 8e-65, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 128/325 (39%), Gaps = 17/325 (5%) Query: 91 LRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERG 150 +R GD ++ L +V + + A PL + +ER Sbjct: 81 IRIGDEVAALQADATIPVGDAYLGRVVDPLGRPLDGAGALGHCVANWPLAGIATPPLERQ 140 Query: 151 NGST-EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI 209 + + R LD +G GQR + A GKT LL +A+ + + V ++ L+ Sbjct: 141 SPEHVLETGVRALDALLTLGVGQRVGLFAGSGVGKTTLLGALARDVYAD----VRVLCLV 196 Query: 210 DERPEEVTE-MQRLV------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 ER EV E R + + +V +T D+ A+ + + A+ V++ Sbjct: 197 GERGREVEECWNRTLSAASRARTTLVVATSDQSAALRARSVPAALSIAEYFRSQGAHVLL 256 Query: 263 LLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATALI 321 ++DS+TR A A + A+G+ T + ++ GG++T + T L Sbjct: 257 MIDSVTRYALALREIGLAAGEPPTVRAYTPGVFAALPKIVERCGALKSGGAITALMTVLT 316 Query: 322 DTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMW 381 ++ +D+ + E + + + LSR +AE+ FP I +S +R + E Sbjct: 317 ES-DDIDDPMAETMRSLLDGHIVLSRALAEQGQFPPIQVPKSVSRVSRYVANDAERALAA 375 Query: 382 ILRKIIHPMGEIDAMEFLINKLAMT 406 I + DA + L+ T Sbjct: 376 ---DAIAQLALYDASKTLVESGLYT 397 >UniRef50_Q0C5J4 Flagellar protein export ATPase FliI n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C5J4_HYPNA Length = 462 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 83/333 (24%), Positives = 131/333 (39%), Gaps = 33/333 (9%) Query: 82 SPSQIRRFNLRTGDTISGKIRPPKE-GERYFALL--KVNEVNFDKPENAR------NKIL 132 SPS I +R GD + + E G+ + + EV + P A ++ L Sbjct: 65 SPSDI----IRIGDVVHIEQEARIEPGDHWLGQIINYRGEVATEMPAGAGLTAKGVSRAL 120 Query: 133 FENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIA 192 P H RL G V D PI RGQR + A GK+ L ++A Sbjct: 121 RAPALPAHLRHRLGPRLATGWM------VTDTLLPICRGQRLGLFAGSGVGKSTFLGSLA 174 Query: 193 QSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEM 245 + + +++ LI ER EV E K VV++T E + A Sbjct: 175 GGLEADR----VVIALIGERSREVGEFVNVNLPETVRHKTVVVSATASESPGAKKRAAYC 230 Query: 246 VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAA 304 + A+ + V+ L DSITR A A+ V +G+ + + A Sbjct: 231 AMATAEHFRDQGHSVLFLFDSITRFAEAHREVALLAGETPALNAFPPSTVRVIAELAERA 290 Query: 305 R-NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRS 363 G +T I + L+ GS ++E + + +G + + LSR IAE+ +PAID +S Sbjct: 291 GPGTGAKGDITGIFSVLV-AGSDLEEPVADMIRGILDGHIILSRNIAERGRYPAIDVLKS 349 Query: 364 GTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 +R E + R++I E+ M Sbjct: 350 VSRALPAAANDWENDLLRDYRRMIALYDEVAPM 382 >UniRef50_D2UDN1 Probable xanthomonas secretion apparatus protein n=1 Tax=Xanthomonas albilineans RepID=D2UDN1_XANAL Length = 449 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 131/305 (42%), Gaps = 23/305 (7%) Query: 116 VNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGL 175 + N + ++ + P + + E + R +D GQR Sbjct: 123 IANTNGAPFSDEPQEMPLDVAGPRYTDRNPHAE-----SLWTGIRAIDGLLTCAIGQRVG 177 Query: 176 IVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-------EVV 228 I A +GK+ LL + I + V +V LI ER EV+E ++ VV Sbjct: 178 IFAAAGSGKSSLLSMLVGGIDAD----VAIVALIGERGREVSEFVEKMRHSQRADQLIVV 233 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTG 287 +T D+ A A++ + A+ + V++ LDS+TR ARA + ASG+ + Sbjct: 234 YATSDQSAVERANAAKVAMAAAEFYRDRGMHVVVYLDSLTRYARAERDIALASGEVPVKR 293 Query: 288 GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSR 347 G + R + A + GS+T T L+++ + D ++ +EF+ + ++LSR Sbjct: 294 GYPLSVFDRLPKLIERAGRIH-VGSITAFYTVLLESEEEAD-MVADEFRSLLDGHIYLSR 351 Query: 348 KIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK 407 +AE +P+ID +S +R +T +++ RK + E ++ I+ + Sbjct: 352 GLAETHHYPSIDVLKSASRLFNAVTDEQQQMMAAAFRKQLARYQE---LQVYIDMGEYQR 408 Query: 408 -TNDD 411 TN + Sbjct: 409 GTNAE 413 >UniRef50_Q1K2D4 ATP synthase subunit alpha n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2D4_DESAC Length = 506 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 72/356 (20%), Positives = 132/356 (37%), Gaps = 35/356 (9%) Query: 52 DGV-LEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERY 110 +G+ + D G + D YL D+ S R ++ G+T+ G++ P Sbjct: 64 EGIAFNVDADEVGVVLLGDYQYLHTGDEARRSG---RVMDVPVGETLIGRVINP------ 114 Query: 111 FALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED-LTARVLDLASPIG 169 P + + + ++ P+ + MER +T +V+D PIG Sbjct: 115 ----------LGAPLDQQGPVNNQHRLPIERPAPAIMERAPVTTPLHTGIKVVDALVPIG 164 Query: 170 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVT----EMQR---L 222 RGQR LI+ + GKT + + + + C + I +R V E++R + Sbjct: 165 RGQRELILGDRQTGKTAIAIDTILNQKGKNVRC--VYCAIGQRSAAVARVIAELERRGAM 222 Query: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282 V+ + ++P A+ + DV+I+ D +T ARAY + Sbjct: 223 DYTVVMVAEGNDPPGLSYIAPYAATTIAEEFMRQGDDVLIVYDDLTHHARAYRELSLLLR 282 Query: 283 KVLTG-GVDANALHRPKRFFGAARNV---EEGGSLTIIATALIDTGSKMDEVIYEEFKGT 338 + + + R A ++ GGSLT + + M I Sbjct: 283 RPPGREAFPGDIFYIHSRLLERATHLHPDHGGGSLTALPIIETEAQ-NMSAYIPTNLISI 341 Query: 339 GNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEID 394 + +L+LS + E PAID +S +R + + L+ E++ Sbjct: 342 TDGQLYLSPTLFELGALPAIDVGKSVSRVGGKAQLEAYRRIAGNLKLAYAQFEELE 397 >UniRef50_A6AXF1 VcsN2 n=15 Tax=Gammaproteobacteria RepID=A6AXF1_VIBPA Length = 420 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 118/280 (42%), Gaps = 23/280 (8%) Query: 138 PLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 197 P+ R +E + +++D IG GQR + AP AGKT + +A ++ Sbjct: 117 PIPLQMRAPIETVFPTKL----KIIDGLFTIGEGQRLGLFAPAGAGKTTTVSIMANNMDA 172 Query: 198 NHPDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKA 250 + V++ +I ER EV E K + ST + V+ + + A Sbjct: 173 D----VVIFAMIGERAREVVEFLEGEIGPEVIRKSITIVSTSEANPLEKVRSGLVAVSIA 228 Query: 251 KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEG 310 + +E K V++ DS+TR ARA + G + GG+ R + N + Sbjct: 229 RYYMEQGKKVVLYFDSLTRFARAQAMLD---GTPIKGGIPIGVSLALSRLVESCGNSIQ- 284 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEEL 370 GS+T I T LI+ D+ I E K + L S IA +PAID +S +R + Sbjct: 285 GSVTGIFTVLIEKEID-DDPIAHEVKSLIDGHLVYSTTIAATGRYPAIDVLKSKSRLQNK 343 Query: 371 LTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 + + ++ ++ +++ + E LI K ND Sbjct: 344 VQEKYYVRLSEKIKDMVYRYFNV---ELLIRVGEYEKGND 380 >UniRef50_B9TD12 Transcription termination factor rho, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9TD12_RICCO Length = 435 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 91/194 (46%), Positives = 134/194 (69%), Gaps = 9/194 (4%) Query: 51 GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER- 109 G+L++L D + F+R+ S YLAG DD+Y+S S +R++ LR GD ++G++R P+EGER Sbjct: 119 AAGILDVL-DNYAFVRT--SGYLAGVDDVYLSLSLVRKYGLRRGDAVAGQVRQPREGERR 175 Query: 110 --YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASP 167 + +++++ VN PE A+N+ F P H RLRME + ++LT R+LDLA+P Sbjct: 176 EKFNPMVRIDAVNGADPELAKNRPDFATFVPTHPTDRLRMET---TPDNLTGRILDLAAP 232 Query: 168 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEV 227 IG+GQRGL+ P K+G+T LL++I S+ N+P+ LMV+L+DERPEEVT+ QR +KGEV Sbjct: 233 IGKGQRGLVTGPTKSGRTTLLRSIGASLTANNPEAHLMVVLLDERPEEVTDFQRAIKGEV 292 Query: 228 VASTFDEPASRHVQ 241 VAST P S + Sbjct: 293 VASTSTGPPSTTSR 306 >UniRef50_C6P430 H+transporting two-sector ATPase alpha/beta subunit central region n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P430_9PROT Length = 599 Score = 213 bits (544), Expect = 7e-54, Method: Composition-based stats. Identities = 67/320 (20%), Positives = 120/320 (37%), Gaps = 47/320 (14%) Query: 88 RFNLRTGDTISG-----------------KIRPPKEGE----RYFALLKVNEVNFD--KP 124 + L+ G + G + P K+GE + V+ V Sbjct: 119 QLGLKIGSHVEGGTILGTVQETQTILHRILVPPGKDGELTELAGAGDITVDAVVAKVKDA 178 Query: 125 ENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGK 184 + +++ + P+ R R+LD P+ +G R + P AGK Sbjct: 179 KGNISELQLFHRWPVRIPRPYRNRDNAVEPLLTGQRILDTFFPLVKGGRAAVPGPFGAGK 238 Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVAS 230 T++ Q IA+ ++ D V+ V ER E+ ++ + + +VA+ Sbjct: 239 TIVQQQIAR---WSDADIVIYVG-CGERGNELVDILESFPKLTDPNTGRSLMERTLLVAN 294 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGV 289 T + P + A+ + DV+++ DS +R A A V G+ + G Sbjct: 295 TSNMPVVAREASIYVGATLAEYYRDQGYDVVMVADSTSRWAEALREVAGRLGQMPVEEGY 354 Query: 290 DANALHRPKRFFGAARNV----EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 A R F+ A V GS+T+I A+ G E + K L Sbjct: 355 PAYLASRLAAFYERAGRVTTLSGNSGSITLIG-AVSPPGGDFSEPVTSHTKEITKTFWAL 413 Query: 346 SRKIAEKRVFPAIDYNRSGT 365 S+++A+ R +PA+D+ S + Sbjct: 414 SKELADARHYPAVDWVESFS 433 >UniRef50_C0QS16 ATP synthase subunit alpha n=2 Tax=Bacteria RepID=C0QS16_PERMH Length = 495 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 56/287 (19%), Positives = 109/287 (37%), Gaps = 12/287 (4%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDL-TARVLDLASPIGRGQRGLIVAPP 180 KP + + + P+ + +R + +V+D PIG+GQR LI+ P Sbjct: 114 GKPLDGKPPVKTTVYYPVEREAPALFDRDFVKDQLYTGIKVIDCMFPIGKGQRELILGDP 173 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK-------GEVVASTFD 233 GKT + + I D + + + I +R + V ++ +K +V++T D Sbjct: 174 STGKTSIAVDTI--INQKDKDVICIYVSIGQRKQSVLDVYTTLKKYGAMDYTVIVSATSD 231 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDAN 292 A+ ++ KDV+I+ D +T+ A AY ++ + + Sbjct: 232 SYPGLQFLSPYSGTAIAEYFLDKNKDVLIVYDDLTKHAFAYQSLSLLLKRPPGREAFPGD 291 Query: 293 ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 + R A +++GGS+T + G ++ I + +++L + Sbjct: 292 IFYIHSRLLERACKIKDGGSITALPVVETQAG-RISSYIPTNVISITDGQIYLDSNLFNI 350 Query: 353 RVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 PA+D RS +R + LR E++ L Sbjct: 351 NQRPAVDVGRSVSRIGGKTQIPALKEVAEFLRLYYAQFLEVEIFTKL 397 >UniRef50_C5S8P1 H+transporting two-sector ATPase alpha/beta subunit central region n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S8P1_CHRVI Length = 598 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 66/276 (23%), Positives = 111/276 (40%), Gaps = 26/276 (9%) Query: 127 ARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTM 186 A +++ P+ R S RV+D P +G +G + P AGKT+ Sbjct: 187 ATHRLSLYQRWPVRKPRPYRRRDDGISPLITGQRVIDTFFPQLKGGKGAVPGPFGAGKTV 246 Query: 187 LLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVASTF 232 + Q IA+ +++ D V+ V ER E+ ++ + + +VA+T Sbjct: 247 VQQQIAR---WSNADIVIYVG-CGERGNELVDVLETFPQLDDPYSGRKLMERTLLVANTS 302 Query: 233 DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGVDA 291 + P + I A+ + DV++L DS +R A A V G+ + G A Sbjct: 303 NMPVVAREASVYVGITMAEYYRDMGYDVVMLADSTSRWAEALREVSGRLGQMPVEEGYPA 362 Query: 292 NALHRPKRFFGAARNVE----EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSR 347 R + A VE GS+T+I A+ G E + K LS+ Sbjct: 363 YLASRLAAVYERAGRVETFGAGSGSVTLIG-AVSPPGGDFSEPVTSHTKDIIETFWALSK 421 Query: 348 KIAEKRVFPAIDYNR--SGTRKEELLTTQEELQKMW 381 ++A+ R +P+ID+ SG K +E+ W Sbjct: 422 ELADARHYPSIDWVTSFSGHVKTAAEWWHKEIDPDW 457 >UniRef50_B1H0B7 ATP synthase subunit alpha n=3 Tax=Bacteria RepID=B1H0B7_UNCTG Length = 513 Score = 211 bits (537), Expect = 5e-53, Method: Composition-based stats. Identities = 74/434 (17%), Positives = 157/434 (36%), Gaps = 42/434 (9%) Query: 16 TLGENMGLENLARMRKQDII-FAILKQHAKSGEDIFGDGV--------LEILQDGFGFLR 66 + + + E + K ++I F +++ E + G+ +E + GF+ Sbjct: 5 EIIQKIEKELYSTQVKPELINFGVIETVGD--EIVKASGLSNAGYYEEIEFEDESIGFVL 62 Query: 67 SADSSYLAGPDDIYVSPSQIRRFN-LRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPE 125 + D YVS ++ + G + + Y + +V + Sbjct: 63 NIDED--------YVSIVLLKNSGHIVRGMKVKSTGKVLSIAVSYKLIGRVINTLGQPID 114 Query: 126 NARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGK 184 K + P+ + ++R + + +D +PIGRGQR LI+ GK Sbjct: 115 GNELKHIDSVHYPVEKIAPGIIQRNSVDNPLKTGIKAIDAMTPIGRGQRELIIGDRGTGK 174 Query: 185 TMLLQNIA---QSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE-------VVASTFDE 234 T + + + + + + I ++ + + +K E V+A+T E Sbjct: 175 TAIAVDTIINQKKLDMGLKSVICIYCSIGQKKSNLASITAKLKEEGAMDYTVVIAATASE 234 Query: 235 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANA 293 PAS + ++ KDV+++ D +T+ A AY + + + Sbjct: 235 PASMQYIAPLAACAIGEYFMDKGKDVLVVYDDLTKHAWAYRQISLLIKRPAGREAYPGDI 294 Query: 294 LHRPKRFFGA-ARNVEEGGSLTIIATALIDT-GSKMDEVIYEEFKGTGNMELHLSRKIAE 351 + R AR ++ G T+ A +I+T G+ M I + +++L + Sbjct: 295 FYLHSRLLERAARMSDKNGGGTLTALPIIETQGNDMSAYIPTNVVSITDGQIYLEADLFN 354 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM--------EFLINKL 403 + PAI+ S +R T+ Q +R + E+ + E+ + +L Sbjct: 355 SGIRPAINVGLSVSRVGGAAQTKSMKQLAGPVRLELSQFRELQSFTQFGSDLDEYALKRL 414 Query: 404 AMTKTNDDFFEMMK 417 K + + + Sbjct: 415 ERGKRITEILKQQQ 428 >UniRef50_Q21Z99 ATP synthase subunit alpha 2 n=29 Tax=cellular organisms RepID=ATPA2_RHOFD Length = 534 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 61/317 (19%), Positives = 120/317 (37%), Gaps = 34/317 (10%) Query: 63 GFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFD 122 G + + +L D++ + R ++ GD + G++ P Sbjct: 78 GVVLLGEYWHLHAGDEVDRTG---RVMDVAVGDGLLGRVIDP----------------LG 118 Query: 123 KPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPK 181 +P + R + + P+ + M+R + +V+D P+GRGQR LI+ + Sbjct: 119 RPLDGRGPVASSHRLPIERPASPIMDRAPVTVPLQTGLKVIDALIPVGRGQRELILGDRQ 178 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK-------GEVVASTFDE 234 GKT + + + + + + I +R V ++ ++ VV + ++ Sbjct: 179 TGKTAIAIDTILNQQGQN--VLCVYCAIGQRASAVAKVVATLREKGAMDFTTVVVTEGND 236 Query: 235 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANA 293 P A+ +E +DV+I+ D +T+ ARAY + + + Sbjct: 237 PPGLAYIAPYAATSIAEHFMEAGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDI 296 Query: 294 LHRPKRFFGAA---RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA 350 + R A R GGSLT + + I + +++LS + Sbjct: 297 FYIHSRLLERATHLRQERGGGSLTALPIIETQAQ-NISAYIPTNLISITDGQIYLSPSLF 355 Query: 351 EKRVFPAIDYNRSGTRK 367 E V PA+D +S +R Sbjct: 356 ELGVLPAVDVGKSVSRV 372 >UniRef50_B9L760 ATP synthase alpha/beta family, nucleotide-binding domain protein n=1 Tax=Nautilia profundicola AmH RepID=B9L760_NAUPA Length = 571 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 60/280 (21%), Positives = 107/280 (38%), Gaps = 31/280 (11%) Query: 116 VNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGL 175 V +N +K + + PL + RV+D PI +G Sbjct: 164 VAVINGNKQNMIKKR-------PLRIPGSFKKRLSPKIPLITGQRVIDFMFPIAKGGSAS 216 Query: 176 IVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------------- 221 I GKT+L Q +A+ + +++ + ER E+TE+ Sbjct: 217 IPGGFGTGKTILQQTLAKYCDAD----IIIYIGCGERGNEMTEVLEEFPNLTDPYSGKPL 272 Query: 222 LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPAS 281 + + ++A+T D P S + I + + +V ++ DS +R A A + Sbjct: 273 MNRTVLIANTSDMPVSAREASIYLGITIGEYFRDQGYNVALMADSTSRWAEAMRELSSRM 332 Query: 282 GK-VLTGGVDANALHRPKRFFGAARNVE----EGGSLTIIATALIDTGSKMDEVIYEEFK 336 G+ + G A+ + + A VE GSL+II A+ G E + K Sbjct: 333 GELPMEEGYPADISSKIASVYERASIVETFASNIGSLSIIG-AVSPAGGDFSEPVTIHTK 391 Query: 337 GTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEE 376 ++ L + +A R +PAI+Y S + E +E+ Sbjct: 392 RFTSVFWALDKSLANARFYPAINYLNSYSNYELNEWWEEK 431 >UniRef50_Q3J9F3 V-type ATP synthase alpha chain n=6 Tax=cellular organisms RepID=VATA_NITOC Length = 591 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 119/303 (39%), Gaps = 28/303 (9%) Query: 125 ENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGK 184 ++ + + P+ + S R+LD P+ +G + + P AGK Sbjct: 179 DHRSQALTLSHRWPVRNPRPYQQREHGVSPLMTGQRILDTFFPLLKGGKAAVPGPFGAGK 238 Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVAS 230 TM+ Q IA+ +++ D V+ V ER E+ E+ + + +VA+ Sbjct: 239 TMVQQQIAR---WSNADIVIYVG-CGERGNELVEVLDSFPELTDPHTGRSLMERTLLVAN 294 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGV 289 T + P + + + + DV+I+ DS +R A A V G+ + G Sbjct: 295 TSNMPVVAREASLYVGVTLGEYYRDQGYDVVIVADSTSRWAEALREVAGRLGQMPVEEGY 354 Query: 290 DANALHRPKRFFGAARNVE----EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 A R F+ A V+ GS+T+I A+ G E + K L Sbjct: 355 PAYLASRLAAFYERAGRVQTLGGSVGSVTLIG-AVSPPGGDFSEPVTSHTKEIVRTFWAL 413 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELL--TTQEELQKMWILRK--IIHPMGEIDAMEFLIN 401 S+ +A+ R +PA+ + S + + E + K W + + + + + + ++N Sbjct: 414 SKDLADARHYPAVSWRESFSDDIPVAARWWAEHIDKHWQAGRAEAMTLLTQAEELSRIVN 473 Query: 402 KLA 404 + Sbjct: 474 LVG 476 >UniRef50_A2BKX6 V-type ATP synthase alpha chain n=17 Tax=cellular organisms RepID=VATA_HYPBU Length = 601 Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats. Identities = 58/271 (21%), Positives = 106/271 (39%), Gaps = 28/271 (10%) Query: 135 NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 194 + P+ + + RV+D P+ +G G I P +GKT+ LQ++A+ Sbjct: 193 HRWPVRRARPIIEKLEPVEPLITGMRVIDTMFPMAKGGTGAIPGPFGSGKTVTLQSLAKW 252 Query: 195 IAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVASTFDEPASRHV 240 A V++ + ER E+TE+ + + ++A+T + P + Sbjct: 253 SAAK----VVIYIGCGERGNEMTEVLETFPKLTDPWTGKPMMERTILIANTSNMPVAARE 308 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGVDANALHRPKR 299 I A+ + DV+++ DS +R A A + + G + R Sbjct: 309 ASIYTGITLAEYYRDMGYDVLLVADSTSRWAEALREIAGRLEEMPAEEGYPSYLASRLAE 368 Query: 300 FFGAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKR 353 F+ A V E GS+TI+ A+ G E + K + L ++A R Sbjct: 369 FYARAGRVKVPGRPERLGSVTIVG-AVSPPGGDFTEPVTANTKRFIRVFWALDARLAYSR 427 Query: 354 VFPAIDYNRSGTRKEELL--TTQEELQKMWI 382 +PAI++ S + E + E + W+ Sbjct: 428 HYPAINWLVSYSAYVETVAKWWHENISPKWL 458 >UniRef50_Q74MJ7 V-type ATP synthase alpha chain n=1 Tax=Nanoarchaeum equitans RepID=VATA_NANEQ Length = 570 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 121/310 (39%), Gaps = 34/310 (10%) Query: 97 ISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED 156 + GKI EG + + VN I + P+ + + Sbjct: 150 VEGKIEEIYEGN-FTIEETIAIVNGKP-------IKLYHEWPIRKPRPYKEKLDYNYPFI 201 Query: 157 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV 216 RVLD+ PI +G + P +GKT+L Q IA+ + +++ + ER E+ Sbjct: 202 TGTRVLDIMFPIAKGGSAAVPGPFGSGKTVLNQQIAKWADSD----IVIYIGCGERGNEM 257 Query: 217 TEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 TE+ + + ++A+T + P + + + + V++ Sbjct: 258 TEVLEEFPKLKDPKTGKPLMYRTILIANTSNMPIAAREASIYLGATIGEYFRDQGYSVVV 317 Query: 263 LLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEE----GGSLTIIA 317 DS +R A A + G++ + G A L + F+ + V GSLTII Sbjct: 318 NADSTSRWAEALREISSRLGEIPSEEGYPAYLLRKLAEFYERSGRVRTLNDLEGSLTIIG 377 Query: 318 TALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQE 375 A+ G E + + L K+A KR +PAI+Y S T++ E + +E Sbjct: 378 -AVSPPGGDFSEPVTQNTLRLVGALWALDSKLAYKRHYPAINYLISYTKQWEFVKKYFEE 436 Query: 376 ELQKMWILRK 385 + + +R+ Sbjct: 437 LYEDVIEIRE 446 >UniRef50_Q05FY3 ATP synthase subunit alpha n=33 Tax=Gammaproteobacteria RepID=ATPA_CARRP Length = 481 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 66/413 (15%), Positives = 145/413 (35%), Gaps = 52/413 (12%) Query: 25 NLARMRK--QDIIFAILKQHAKSGEDIFGDG-----VLEILQDGFGFLRSADSSYLAGPD 77 N + K ++ + ++AK GE I V + + + + + L + Sbjct: 3 NEGIINKIYDSVVEVLGLKNAKYGEMILFSKNIKGIVFSLNKKNVNIIILNNYNELTQGE 62 Query: 78 DIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLT 137 Y + + F + G + G+I + + + +I + Sbjct: 63 KCYCTN---KIFEVPVGKQLIGRIINSR----------------GETLDLLPEIKINEFS 103 Query: 138 PLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 196 P+ + M+R + +D PIG+GQR LI+ + GKT + I I Sbjct: 104 PIEKIAPGVMDRETVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTIC--IDTIIN 161 Query: 197 YNHPDCVLMVLLIDERPEEVTEMQRLVK-------GEVVASTFDEPASRHVQVAEMVIEK 249 + + + + + I ++ + + +K +VAST + A+ Sbjct: 162 QKNKNIICVYVCIGQKISSLINIINKLKKFNCLEYTIIVASTASDSAAEQYIAPYTGSTI 221 Query: 250 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAA---- 304 ++ + +D +I+ D +T+ A AY + + + + R + Sbjct: 222 SEYFRDKGQDCLIVYDDLTKHAWAYRQISLLLRRPPGREAYPGDVFYLHSRLLERSSKVN 281 Query: 305 -------RNVEEGGSLTIIATALIDT-GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 356 N+ + GSLT +I+T + I + ++ L + + P Sbjct: 282 KFFVNKKSNILKAGSLTAF--PIIETLEGDVTSFIPTNVISITDGQIFLDTNLFNSGIRP 339 Query: 357 AIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKL-AMTKT 408 +I+ S +R + + +R ++ E++A + L + TK Sbjct: 340 SINVGLSVSRVGGAAQYKIIKKLSGDIRIMLAQYRELEAFSKFSSDLDSETKN 392 >UniRef50_B2A3G4 ATP synthase subunit alpha n=4 Tax=Bacteria RepID=ATPA_NATTJ Length = 508 Score = 201 bits (511), Expect = 5e-50, Method: Composition-based stats. Identities = 69/391 (17%), Positives = 137/391 (35%), Gaps = 46/391 (11%) Query: 17 LGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGP 76 + GLEN+ + + +I+G L + +D G + + S++ Sbjct: 38 IARVHGLENVMA-----------NELVEFPGEIYGM-ALNLEEDNVGCVLLGEYSHIKEG 85 Query: 77 DDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENL 136 D + + I + GD + G++ P +P + + I + Sbjct: 86 DQVKRTGRIIE---VPVGDDLVGRVVNPV----------------GEPRDGKGPIEATDF 126 Query: 137 TPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 195 P+ + ++R + +D PIGRGQR LI+ GK+ + I + Sbjct: 127 RPVETRAPGVIDRKPVEEPLQTGLKAIDSMIPIGRGQRELIIGDRGTGKSAI--GIDTIL 184 Query: 196 AYNHPDCVLMVLLIDERPEEVTEMQ-------RLVKGEVVASTFDEPASRHVQVAEMVIE 248 D + + I ++ V ++ + VVA+T DEPA Sbjct: 185 NQKDSDVYCIYVAIGQKKSTVAQVVDVLERHGAMDYTTVVAATADEPAPLLYLAPYAGCS 244 Query: 249 KAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV 307 ++ + K V+++ D +++ A +Y + + + + R A + Sbjct: 245 MGEKFMHEGKHVLVVYDDLSKHAASYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKL 304 Query: 308 ---EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 GGSLT + G + I + +++L + PA+D S Sbjct: 305 NDENGGGSLTALPIIETQAG-DVSAYIPTNVISITDGQIYLISDLFHAGQRPAVDVGISV 363 Query: 365 TRKEELLTTQEELQKMWILRKIIHPMGEIDA 395 +R + Q LR + E++A Sbjct: 364 SRVGGSAQLKGMKQVSGTLRLDLAQYRELEA 394 >UniRef50_A3MXY7 V-type ATP synthase alpha chain n=12 Tax=Archaea RepID=VATA_PYRCJ Length = 594 Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 107/285 (37%), Gaps = 29/285 (10%) Query: 135 NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 194 + P+ R + RV+D PI +G + P +GKT+ + ++ Sbjct: 193 HKWPVRRPRPFREKLPPVEPLITGVRVIDTMFPIAKGGTAAVPGPFGSGKTV----MIRT 248 Query: 195 IAYNHPDCVLMVLLIDERPEEVTE--------------MQRLVKGEVVASTFDEPASRHV 240 ++ +++ +L ER E + L + ++ +T + P + Sbjct: 249 LSMFAQSRIIIPVLCGERGNEAADALQGLLKLKDPSTGRPLLERTTIIVNTSNMPVAARE 308 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKR 299 M + + DV++L DS +R A A V G++ + G A R Sbjct: 309 ASVYMGTTLGEYFRDQGYDVLVLADSTSRWAEAMREVALRIGEMPSEEGYPAYLPTRLAE 368 Query: 300 FFGAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKR 353 F+ A V E GSLTI A+ G E + LS ++A R Sbjct: 369 FYERAGRVVLIGSGERVGSLTIAASV-SPPGGDFTEPVTSNTLRFIGAFWPLSPRLAYSR 427 Query: 354 VFPAIDYNRSGTRKEELL---TTQEELQKMWILRKIIHPMGEIDA 395 +PAID+ + +R + + ++ + +R ++ + +A Sbjct: 428 HYPAIDWLMAFSRYVDTVEVWWSKNVSPEWRRIRDVLQSILVKEA 472 >UniRef50_Q8FXF0 Flagellum-specific ATP synthase FliI n=3 Tax=Brucella RepID=Q8FXF0_BRUSU Length = 422 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 59/292 (20%), Positives = 107/292 (36%), Gaps = 49/292 (16%) Query: 117 NEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLI 176 N ++ + + A R R++RG V+D+ +P+ GQR I Sbjct: 117 NAIDGKGALKLGTRPMAAESLAPAALRRARVDRG----LRTGVNVIDIFTPLCFGQRIGI 172 Query: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR------LVKGEVVAS 230 A GK+ LL + ++ ++ +++ L ER EV EM L K V + Sbjct: 173 FAGSGVGKSTLLAMMTRAADFDT----VVLALTGERGREVREMLEETMAGHLGKTITVVA 228 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGV 289 T DE A+ + ++V++++DS+TR A A V A+ + G Sbjct: 229 TGDESPMMRRLAPNTATAIAEYFRDLGQNVLLIVDSVTRFAHAAREVAIAAEEPPVARGY 288 Query: 290 DANALHRPKRFFGAA--RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSR 347 + + R A + E GGS+ I + L+D G ++ Sbjct: 289 PPSVFSQLPRLLERAGPGSAEAGGSIAGIYSVLVD-GDDHNDP----------------- 330 Query: 348 KIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 S +R + T E+ + + LR ++ E + + Sbjct: 331 --------------ASVSRLAKHNWTPEQRKLVMQLRSMVARFEETRDLRAI 368 >UniRef50_Q98QX5 ATP SYNTHASE ALPHA CHAIN n=2 Tax=Mycoplasma RepID=Q98QX5_MYCPU Length = 529 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 55/284 (19%), Positives = 108/284 (38%), Gaps = 20/284 (7%) Query: 133 FENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIA 192 FE P+++ + + +D PIGRGQ+ LI+ GKT + N Sbjct: 110 FEEAKPIYSRK------AVNAPLETGITAIDAVLPIGRGQKQLIIGDKGTGKTAIALNAI 163 Query: 193 QSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-------EVVASTFDEPASRHVQVAEM 245 + ++ + + + ++ EEV E+ ++K +++S+ D+ A + + Sbjct: 164 LAQEKSN--VISIYAAVGKKREEVVEIFSVLKSRKLMDKTIIISSSADDLAVTKYLLPYV 221 Query: 246 VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAA 304 + A+ +DV++++D +T A AY + SG + + R A Sbjct: 222 SMSVAEHYQSLGRDVLVVIDDLTNHADAYREISLLSGSAPGREAYPGDIFYTHSRLLERA 281 Query: 305 RNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYN 361 GGS+T I A S + I + ++ S K+ PAID Sbjct: 282 GKFSDEFGGGSITCIPIAQT-LASDISGYIPTNLISITDGQIFTSTKLFNSGKRPAIDIG 340 Query: 362 RSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 S +R + +Q L+ +I + ++ + Sbjct: 341 LSVSRIGSIAQKYSMIQASKGLKTLITEFLNQKKLSSVLTERTK 384 >UniRef50_A3CK48 V-type ATP synthase alpha chain n=144 Tax=cellular organisms RepID=VATA_STRSV Length = 596 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 50/293 (17%), Positives = 112/293 (38%), Gaps = 30/293 (10%) Query: 137 TPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 196 P+ + RV+D P+ +G + P AGKT++ +A+ Sbjct: 192 WPVRRGRPFAQKLIPVEPLVTGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQVAKFAN 251 Query: 197 YNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVASTFDEPASRHVQV 242 + +++ + ER E+T++ + + ++A+T + P + Sbjct: 252 VD----IVIYVGCGERGNEMTDVLNEFPELIDPTTGQSIMQRTVLIANTSNMPVAAREAS 307 Query: 243 AEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFF 301 I A+ + V I+ DS +R A A + ++ G A R ++ Sbjct: 308 IYTGITIAEYFRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRIAEYY 367 Query: 302 GAARNVE------EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVF 355 A V+ GS+T I A+ G + E + + + L ++A++R F Sbjct: 368 ERAGRVKTLGSTAREGSITAIG-AVSPPGGDISEPVTQNTLRIVKVFWGLDAQLAQRRHF 426 Query: 356 PAIDYNRSGTRKEELL--TTQEELQKMW--ILRKIIHPMGEIDAMEFLINKLA 404 PAI++ S + + + + + W + K ++ + + ++ ++ + Sbjct: 427 PAINWLSSYSLYLDEVGAYIDQHEKIAWAEKVTKAMNILQKESELQEIVRLVG 479 >UniRef50_A3DHP0 V-type ATP synthase alpha chain n=14 Tax=cellular organisms RepID=VATA_CLOTH Length = 589 Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 56/300 (18%), Positives = 120/300 (40%), Gaps = 33/300 (11%) Query: 137 TPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 196 P+ R + + RV+D P+ +G + P +GKT++ +A+ Sbjct: 191 WPVRIGRPYREKLPPNAPLVTGQRVIDTLFPLAKGGVAAVPGPFGSGKTVVQHQLAKWAD 250 Query: 197 YNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVASTFDEPASRHVQV 242 + +++ + ER E+T++ + + + ++A+T D P + Sbjct: 251 AD----IVVYIGCGERGNEMTDVLKEFPELKDPKTGESLMKRTVLIANTSDMPVAAREAS 306 Query: 243 AEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFF 301 + A+ + V ++ DS +R A A + ++ G A R +F+ Sbjct: 307 IYTGMTIAEYFRDMGYSVALMADSTSRWAEALREMSGRLEEMPGEEGYPAYLGSRLAQFY 366 Query: 302 GAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVF 355 A V G+LT I A+ G + E + + + L +A +R F Sbjct: 367 ERAGRVVCLGSDGREGALTAIG-AVSPPGGDLSEPVTQATLRIIKVFWGLDSSLAYRRHF 425 Query: 356 PAIDYNRSGTRKEELL--TTQEELQKMW-ILR----KIIHPMGEIDAMEFLINKLAMTKT 408 PAI++ +S + +++ E + + W LR +I+ E++ + L+ A++ + Sbjct: 426 PAINWLQSYSLYLDIIGKWISENISRDWETLRSDTMRILQEEAELEEIVRLVGVDALSPS 485 >UniRef50_B7JY91 H+transporting two-sector ATPase alpha/beta subunit central region n=18 Tax=Bacteria RepID=B7JY91_CYAP8 Length = 607 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 75/328 (22%), Positives = 121/328 (36%), Gaps = 47/328 (14%) Query: 95 DTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGST 154 DT +I+ ER L + V P+ K E L P Sbjct: 186 DTPIARIKDKNGQERSITLTQSWPVRRPLPQELLTKRYSERLYP-------------QEP 232 Query: 155 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPE 214 T R++D PI RG G I P AGKT+L I++ A + +++V+ ER Sbjct: 233 MITTQRIIDTFLPIARGGTGCIPGPFGAGKTVLQSMISRFSAVD----IVIVVACGERAG 288 Query: 215 EV----TEMQRLV----------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260 EV TE ++ + ++ +T P + I + + DV Sbjct: 289 EVVETITEFPKMKDPKTGGSLMDRTIIICNTSSMPVAAREASIYTGITLGEYYRQMGYDV 348 Query: 261 IILLDSITRLARAYNTVVPASGK-VLTGGVDANALHRPKRFFGAAR----NVEEGGSLTI 315 +++ DS +R A+A + A K + A N GSLT+ Sbjct: 349 LLIADSTSRWAQAMRETSGRLEEIPGEEAFPAYLDSSIKAVYERAGMIRTNDGSIGSLTM 408 Query: 316 IATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTT-- 373 I T G +E + + T L LS + A KR +PA+D S +R + L Sbjct: 409 IGTV-SPAGGNFEEPVTQSTLSTVKAFLGLSAERAYKRFYPAVDILISWSRYLQQLAPWF 467 Query: 374 QEELQKMWILRKIIHPMGEIDAMEFLIN 401 ++ + W+ R ++ M L+ Sbjct: 468 EKNVSPGWVKR--------VEEMIDLLK 487 >UniRef50_C0QT21 V-type ATP synthase alpha chain (V-type ATPase subunitA) n=1 Tax=Persephonella marina EX-H1 RepID=C0QT21_PERMH Length = 576 Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats. Identities = 60/289 (20%), Positives = 116/289 (40%), Gaps = 27/289 (9%) Query: 138 PLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 197 PL R + R++D PI +G I GKT+L Q +A+ + Sbjct: 181 PLRVPLRFKKRLKPDIPMITGQRIIDFLFPIAKGGTASIPGGFGTGKTVLQQTLAK---W 237 Query: 198 NHPDCVLMVLLIDERPEEVTEM--------------QRLVKGEVVASTFDEPASRHVQVA 243 + D ++ + ER E+TE+ + + + ++A+T D P S Sbjct: 238 SDADLIVYIG-CGERGNEMTEVLNEFPQLEDPYTGKKLIERTVLIANTSDMPVSAREASI 296 Query: 244 EMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGVDANALHRPKRFFG 302 + I A+ + V ++ DS +R A A + + G A+ + + Sbjct: 297 YLGITIAEYFRDMGYHVALMADSTSRWAEAIRELSARINEIPAEEGFPADLASKIASVYE 356 Query: 303 AARNVE----EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAI 358 A VE + GS+T+I A+ G E + + + L +++A R +PAI Sbjct: 357 RAGYVEAFSGKKGSITVIG-AVSPPGGDFSEPVTRHTRRFTTVFWALDKELASSRFYPAI 415 Query: 359 DYNRSGTRKEELL--TTQEELQKMWILRKIIHP-MGEIDAMEFLINKLA 404 +Y S + + + +E + + LR+ + + E D ++ ++ L Sbjct: 416 NYMLSYSGYVDTVRRWWEERSPEWFDLREWMIKILQEDDKLQRIVKLLG 464 >UniRef50_Q184E7 V-type ATP synthase alpha chain n=74 Tax=cellular organisms RepID=VATA_CLOD6 Length = 592 Score = 197 bits (501), Expect = 7e-49, Method: Composition-based stats. Identities = 55/256 (21%), Positives = 99/256 (38%), Gaps = 26/256 (10%) Query: 137 TPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 196 P+ R ++ S RV+D PI +G I P +GKT+ +A+ Sbjct: 191 WPVRKERPYREKKTPDSLLVTGQRVIDTFFPITKGGVAAIPGPFGSGKTVTQHQLAKWAD 250 Query: 197 YNHPDCVLMVLLIDERPEEVTEM--------------QRLVKGEVVASTFDEPASRHVQV 242 + +++ + ER E+T++ + + ++A+T D P + Sbjct: 251 AD----IVVYIGCGERGNEMTDVLLEFPELKDPRTGESLMQRTVLIANTSDMPVAAREAS 306 Query: 243 AEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFF 301 I A+ + V ++ DS +R A A + ++ G A R +F+ Sbjct: 307 IYTGITIAEYFRDMGYSVALMADSTSRWAEALREMSGRLEEMPGEEGYPAYLGSRLAQFY 366 Query: 302 GAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVF 355 A V E G+LT I A+ G E + + + L +A KR F Sbjct: 367 ERAGKVNCLGMDEREGTLTAIG-AVSPPGGDTSEPVSQATLRIVKVFWGLDASLAYKRHF 425 Query: 356 PAIDYNRSGTRKEELL 371 PAI++ S + +E + Sbjct: 426 PAINWLTSYSLYQEKV 441 >UniRef50_B0B8U3 Flagellum-specific ATP synthase n=15 Tax=Chlamydiaceae RepID=B0B8U3_CHLT2 Length = 434 Score = 197 bits (500), Expect = 1e-48, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 104/312 (33%), Gaps = 16/312 (5%) Query: 89 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRME 148 + L G + RP L +V + + + + S Sbjct: 75 YYLAIGAEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLSPLFSSPSSPMSR 134 Query: 149 RGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 R +D IG GQR I + P GK+ LL IA+ + ++ L Sbjct: 135 TPIQEVFPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQT----INVIAL 190 Query: 209 IDERPEEVTEMQ-------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ER EV + + ++AST E A+ V I A+ + V+ Sbjct: 191 IGERGREVRDYVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVL 250 Query: 262 ILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 +DS++R + V A G+ L T A+ H F A N ++ GS+T L Sbjct: 251 FTMDSLSRWIESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGNNDK-GSITSFYAIL 309 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 ++ + K + LS + P I+ S +R L Sbjct: 310 HYA--NHPDIFTDYVKSLLDGHFFLSPQEKSFSS-PPINVLTSLSRSSRQLALPHHYAAA 366 Query: 381 WILRKIIHPMGE 392 L ++ E Sbjct: 367 QELLSLLKAYHE 378 >UniRef50_Q2ST36 ATP synthase subunit alpha n=4 Tax=Mycoplasma mycoides group RepID=ATPA_MYCCT Length = 525 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 122/318 (38%), Gaps = 18/318 (5%) Query: 91 LRTGDTISGKIRPPKEGERYFALL-KVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 +R GD + + E ALL +V + P + I F P+ + M R Sbjct: 82 IREGDIVK-RTNKVVETPVGDALLGRVIDALGQ-PIDNLGPIDFTKTRPVERVATSVMAR 139 Query: 150 GNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 + S + +D A PIG+GQR LI+ + GKT + I I + + + + Sbjct: 140 KSVSQPLETGILAIDSAIPIGKGQRELIIGDRQTGKTAIA--IDAIINQKNRNVKCIYVA 197 Query: 209 IDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ++ + ++ + VV + +PAS I A+ +E DV+ Sbjct: 198 IGQKDSTIVQVVEKFKKYGAMDYTVVVNAGASQPASLQYLSPYTGITIAEEWMESGNDVL 257 Query: 262 ILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEE---GGSLTIIA 317 I+ D +T+ A +Y + + + + R A V E GGS+T + Sbjct: 258 IVYDDLTKHAVSYREMSLLLRRPPGREAYPGDVFYLHSRLLERAARVNENYGGGSITALP 317 Query: 318 TALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEEL 377 G + I + ++ LS ++ + V PA+D S +R + Sbjct: 318 IIETQAG-DISAYIPTNVISITDGQIFLSSELFNQGVRPAVDIGPSVSRVGSAAQIKSIK 376 Query: 378 QKMWILRKIIHPMGEIDA 395 Q L+ + E+++ Sbjct: 377 QVSGTLKLELAQYYELES 394 >UniRef50_C9KMG4 ATP synthase subunit alpha n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMG4_9FIRM Length = 505 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 60/343 (17%), Positives = 118/343 (34%), Gaps = 36/343 (10%) Query: 83 PSQIRR----FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTP 138 SQ++R + G+ + G++ V+ + +P + + KI P Sbjct: 85 GSQVKRTGRIMQVPVGEAMIGRV--------------VDAL--GRPIDGKGKIETTETRP 128 Query: 139 L-HANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 197 + + + + + +D PIGRGQR LI+ GKT + + + Sbjct: 129 VEYPAPGIADRKPVKEPLQTGIKAIDALVPIGRGQRELIIGDRGIGKTAIAIDTILNQHD 188 Query: 198 NHPDCVLMVLLIDERPEEVT-------EMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA 250 + C+ + + I ++ V E + VVA+T + + + A Sbjct: 189 QN--CICVYVAIGQKASTVARVVKTLEERGAMDYTIVVAATAADSSPLQYLAPYAGVAMA 246 Query: 251 KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE- 308 + + K + + D +T+ A AY + + + + R A + Sbjct: 247 EHFMYQGKACLCVYDDLTKHAAAYRAMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLND 306 Query: 309 --EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 GGS+T + G + I + ++ L + PAI+ S +R Sbjct: 307 ELGGGSITALPIIETQAG-DLSAYIPTNVISITDGQIMLETDSFYSGIRPAINVGLSVSR 365 Query: 367 KEELLTTQEELQKMWILRKIIHPMGEIDA-MEFLINKLAMTKT 408 + Q LR + E+ A +F + TK Sbjct: 366 VGGSAQIKAMKQVAGTLRLDLAQYRELAAFSQFASDLDKETKA 408 >UniRef50_B7AW25 ATP synthase subunit alpha n=10 Tax=Bacteria RepID=B7AW25_9BACE Length = 684 Score = 195 bits (496), Expect = 3e-48, Method: Composition-based stats. Identities = 55/317 (17%), Positives = 112/317 (35%), Gaps = 31/317 (9%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 + GD G+I +P + I P+ + ++R Sbjct: 270 GIPVGDAFKGRIINA----------------LGEPLDGEGDIEQAGFRPIECPAPSIVDR 313 Query: 150 GNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 + S + +D PIGRGQR LI+ + GKT + + I D V + + Sbjct: 314 KSVSVPMETGILSIDSMFPIGRGQRELIIGDRQTGKTSIAMDTI--INQKGKDVVCIYVA 371 Query: 209 IDERPEEVTEMQRLVK-------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ++ + ++ +K +V++T +PA A+ + KDV+ Sbjct: 372 IGQKASTIAKLVNTLKKNDAMDYTIIVSATASDPAPLQYIAPYSGTALAEYFMYQGKDVL 431 Query: 262 ILLDSITRLARAYNTVVPASGK-VLTGGVDANALHRPKRFFGAARNV---EEGGSLTIIA 317 I+ D +++ A AY + + + + R + + GGS+T + Sbjct: 432 IVYDDLSKHAVAYRAISLLLERSPGREAYPGDVFYLHSRLLERSSRLTAEAGGGSITALP 491 Query: 318 TALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEEL 377 G + I + ++ L ++ PA++ S +R T+ Sbjct: 492 IIETQAG-DVSAYIPTNVISITDGQIFLESELFFAGQRPAVNVGLSVSRVGGAAQTKAMK 550 Query: 378 QKMWILRKIIHPMGEID 394 + +R + E++ Sbjct: 551 KASGSIRIDLAQYREME 567 >UniRef50_A1RX21 V-type ATP synthase alpha chain n=14 Tax=cellular organisms RepID=VATA_THEPD Length = 601 Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 99/256 (38%), Gaps = 26/256 (10%) Query: 137 TPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 196 P+ + + + R++D PI +G G I GKT+ L ++ Sbjct: 194 WPVRQPRPYKERLPSEVPLLIGQRIIDTFFPIAKGGAGAIPGGFGTGKTVTLHKVSMYSD 253 Query: 197 YNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVASTFDEPASRHVQV 242 +++ + ER E+ EM + + + ++A+T + P S Sbjct: 254 SQ----IVVYIGCGERGNEIAEMLKEFPVLVDPKSGRPIIERSIIIANTSNMPVSAREAS 309 Query: 243 AEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGVDANALHRPKRFF 301 M + A+ + DV ++ DS +R A A + G+ + G A + F+ Sbjct: 310 IYMGVTIAEYYRDQGYDVTLIADSTSRWAEALREIAGRLGELPVERGYPAYLPDKIAEFY 369 Query: 302 GAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVF 355 V E GS+T++ A+ G +E + L +A +R F Sbjct: 370 ERGGRVKALGSPERSGSVTVLG-AVSPPGGDYNEPVTIHTLRFVGTMWALDTDLAYRRHF 428 Query: 356 PAIDYNRSGTRKEELL 371 PAI++ +S ++ +++ Sbjct: 429 PAINWLKSFSQYADII 444 >UniRef50_C4ZAP4 Flagellar protein export ATPase FliI n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZAP4_EUBR3 Length = 373 Score = 194 bits (494), Expect = 5e-48, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 7/175 (4%) Query: 246 VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAA 304 A+ + +DV++++DS+TR + A + ASG+ T G + + A Sbjct: 174 STLIAEYFRDKGEDVLLMMDSLTRFSMAQREIGLASGEPPVTRGYPPSVYSEMPKLLERA 233 Query: 305 RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 ++ GS+T + T L+D G +E I + + + + L RK+ K +PAID +S Sbjct: 234 GRADK-GSITGLYTVLVD-GDDFNEPITDTARSILDGHIMLDRKLGHKNHYPAIDVLQSI 291 Query: 365 TRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA-MTKTNDDFFEMMKR 418 +R + T+E L+ ++ E + LIN A +N D +++ Sbjct: 292 SRVMSAIATKEHKNLAGRLKNVLATYTEAED---LINIGAYKNGSNQDIDYAIQK 343 >UniRef50_O83541 V-type ATP synthase alpha chain 2 n=6 Tax=Bacteria RepID=VATA2_TREPA Length = 605 Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats. Identities = 51/259 (19%), Positives = 92/259 (35%), Gaps = 24/259 (9%) Query: 126 NARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKT 185 + + P+ + R +D+ P+ +G I GKT Sbjct: 190 DLGEPLFLSQYWPVRRARPFSKKLAVCEPLVTGQRAIDVFFPLSKGGTAAIPGGFGTGKT 249 Query: 186 MLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVAST 231 M +A+ + +++ + ER E+T++ + + ++A+T Sbjct: 250 MTQHAVAKWCDAD----IIVYIGCGERGNEMTDVLSEFPKLIDPRTGRSLMERTILIANT 305 Query: 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGVD 290 + P S I A+ + V I+ DS +R A A + + G Sbjct: 306 SNMPVSAREVSLYSGITLAEYYRDMGMHVAIMADSTSRWAEALRELSGRMEEMPAEEGFP 365 Query: 291 ANALHRPKRFFGAARNVE----EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 A R F+ A VE GS++II A+ G E + + K L Sbjct: 366 AYLPTRLAEFYERAGRVETCVAREGSVSIIG-AVSPLGGDFSEPVTQHTKRFIRCFWALD 424 Query: 347 RKIAEKRVFPAIDYNRSGT 365 R++A R +PAI + S + Sbjct: 425 RELAHARHYPAIGWIDSYS 443 >UniRef50_Q0AEI9 ATP synthase subunit alpha 2 n=5 Tax=Proteobacteria RepID=ATPA2_NITEC Length = 516 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 63/373 (16%), Positives = 129/373 (34%), Gaps = 38/373 (10%) Query: 39 LKQHAKSGEDIFGDGV----LEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTG 94 L + +F GV L++ G + S + + +Y + + ++ G Sbjct: 52 LARALADELLVFASGVHGIVLDLEPGRLGIILLGPSEQIHLGETVYRTRKVV---SVPVG 108 Query: 95 DTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER-GNGS 153 + G++ G L ++ + P+ A + + R Sbjct: 109 SALLGRVIDAM-GRPRDTLGPIDAIAEH---------------PIEAEAPSILNRTQIFR 152 Query: 154 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERP 213 + +D A P+G GQR LI+ + GKT + I + D + + + +R Sbjct: 153 PLATGLKAIDAAIPVGLGQRELIIGDRQTGKTSIA--IDTMLNQARSDVLCIYCAVGQRG 210 Query: 214 EEVTEMQRLVKG-------EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDS 266 + V + R +K V+++ +E + A+ +DV+++ D Sbjct: 211 DAVARVIRALKDGEMLQRCIVMSAGDEEAPGLSYIAPYAAMTMAEYFSAQGQDVLVIFDD 270 Query: 267 ITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE---EGGSLTIIATALID 322 +T AR+Y + + + + R A GGS+T + Sbjct: 271 MTHHARSYRELSLLLRRPPGREAFPGDIFYVHARLLERAGQFGADIGGGSITTLPVVETQ 330 Query: 323 TGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWI 382 G + I + +++LS ++ K FPA+D S +R + Sbjct: 331 AG-NLSAYIPTNLISITDGQIYLSPQLVRKNQFPAVDLGLSVSRVGSKAQNRTLRGVSGN 389 Query: 383 LRKIIHPMGEIDA 395 LR + E++ Sbjct: 390 LRVTLSQFEELED 402 >UniRef50_D1PIS0 ATP synthase subunit alpha n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIS0_9FIRM Length = 679 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 62/354 (17%), Positives = 122/354 (34%), Gaps = 36/354 (10%) Query: 54 VLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFAL 113 +L++ + G + + L S +RR R D G+ + Sbjct: 236 ILDLRRKRTGVVLLGSAEGLTE-------GSLVRRTG-RPADVPVGEALIGR-------- 279 Query: 114 LKVNEVN-FDKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRG 171 VN +P + I P+ + + R + +D PIGRG Sbjct: 280 ----TVNALGQPIDGLGPIDCTETRPIEHEASGVVSREPVTQPMQTGILAIDAMVPIGRG 335 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK------- 224 QR LI+ + GKT + + + D + + + I ++ V ++ +K Sbjct: 336 QRELIIGDRQTGKTSIATDAILNQKGQ--DMICIYVAIGQKASTVARLRETLKKHGAMEY 393 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK- 283 +V++ E AS + + KDV+I+ D +++ A AY T+ + Sbjct: 394 SIIVSAPAAEGASMQYIAPYAGAAMGEYFMSKGKDVLIVYDDLSKHAVAYRTLSLLLRRS 453 Query: 284 VLTGGVDANALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGN 340 + + R A + GGS+T + G + I + Sbjct: 454 PGREAYPGDVFYLHSRLLERACRLTKEYGGGSMTALPIVETQAG-DVSAYIPTNVISITD 512 Query: 341 MELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEID 394 +++L + PA++ S +R T+ + LR + E++ Sbjct: 513 GQIYLESGLFFSGQRPAVNVGLSVSRVGGAAQTRAIKKTAGTLRIDLARYRELE 566 >UniRef50_B1AIC1 ATP synthase subunit alpha n=43 Tax=Bacteria RepID=ATPA_UREP2 Length = 799 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 61/353 (17%), Positives = 128/353 (36%), Gaps = 34/353 (9%) Query: 55 LEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALL 114 L + +D G + D S + D +Y + + + GD + G++ Sbjct: 65 LNLEEDAVGVVLLGDYSNIKEGDRVYRTKRIVE---VPVGDVMLGRV------------- 108 Query: 115 KVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQR 173 V+ + K + + I+ + + + M+R + + +D PIG+GQR Sbjct: 109 -VDAL--GKAVDNKGNIVANKFSVIEKIAPGVMDRKSVHQPLETGILSIDAMFPIGKGQR 165 Query: 174 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERP-------EEVTEMQRLVKGE 226 LI+ + GKT + + + + +CV + I ++ E+ + Sbjct: 166 ELIIGDRQTGKTTIAIDAIINQKGRNVNCVYVA--IGQKNSTIANVVRELEAHGAMEYTT 223 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT 286 VV + E + + A+ + KDV+I+ D +++ A AY T+ + Sbjct: 224 VVTANASELPALQYIAPFTGVTIAEEWMHQGKDVLIVYDDLSKHAIAYRTLSLLLRRPPG 283 Query: 287 G-GVDANALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 + + R A ++ GS+T + G + I + + Sbjct: 284 REAYPGDVFYLHSRLLERACKLKDELGAGSITALPIIETQAG-DISAYIPTNVISITDGQ 342 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDA 395 + + + PAID +S +R + Q L+ + E++A Sbjct: 343 IFMMTSLFNAGQRPAIDAGQSVSRVGSAAQIKSVKQTGASLKLELANYRELEA 395 >UniRef50_B5YBQ0 ATP synthase subunit alpha n=2 Tax=Dictyoglomus RepID=ATPA_DICT6 Length = 510 Score = 192 bits (487), Expect = 3e-47, Method: Composition-based stats. Identities = 67/367 (18%), Positives = 127/367 (34%), Gaps = 35/367 (9%) Query: 54 VLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFAL 113 VL + +D G + Y+ + +Y + + + TG G++ P Sbjct: 64 VLSLKEDSVGVILFGRDEYVKEGEVVYSTG---KILQVPTGSGFLGRVIDP--------- 111 Query: 114 LKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQ 172 P + I E P+ + +R R +D PIG GQ Sbjct: 112 -------LGNPIDGGGLIFPEAYVPVDNEAPSIFDREPVKEPLYTGIRAIDALIPIGHGQ 164 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG------E 226 R LI+ + GKT + I I+ + + + + I ++ + + + ++ Sbjct: 165 RELILGDRQTGKTTIA--IDTIISQRNYGTICIYVAIAQKRTNIARIVQTLREYGALSNT 222 Query: 227 VVASTF-DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 +V +TF D+P + + + + V+I+ D +T+ A Y V +V Sbjct: 223 IVIATFPDDPPALRYIAPMAGCAMGEYFMRQGERVLIVYDDLTKHANTYREVALLLRRVP 282 Query: 286 TG-GVDANALHRPKRFFGAARNVEE---GGSLTIIATALIDTGSKMDEVIYEEFKGTGNM 341 + + A + GG+LT + A G ++ I + Sbjct: 283 GREAYPGDIFYLHSHLLERAAKLSRKLGGGALTALPIAETLAG-EISTYIPTNLISITDG 341 Query: 342 ELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDA-MEFLI 400 +++L + V PAI+ S +R + Q LR + E +EF Sbjct: 342 QIYLDTALFNAGVRPAINVGLSVSRVGGSAQPKGMRQVAGRLRLDLAQYREYAMFLEFGT 401 Query: 401 NKLAMTK 407 TK Sbjct: 402 ELDMATK 408 >UniRef50_P35381 ATP synthase subunit alpha, mitochondrial n=46 Tax=cellular organisms RepID=ATPA_DROME Length = 552 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 65/413 (15%), Positives = 138/413 (33%), Gaps = 50/413 (12%) Query: 6 LKNTPVSELITLGENMGL-ENLARMRKQDIIFAILKQHAKSGEDIFGDGV----LEILQD 60 L P ++L G + + + +AR ++ + A F G+ L + D Sbjct: 59 LGVAPKADLEETGRVLSIGDGIAR------VYGLNNIQADEM-VEFSSGLKGMALNLEPD 111 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G + + + D + + + + ++ GD + G++ ++ Sbjct: 112 NVGVVVFGNDKLIKQGDIVKRTGAIV---DVPVGDELLGRVVDALGN----------AID 158 Query: 121 FDKPENARNKILFENLTP-LHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAP 179 N +++ P + +R + +D PIGRGQR LI+ Sbjct: 159 GKGAINTKDRFRVGIKAPGIIPRVSVR------EPMQTGIKAVDSLVPIGRGQRELIIGD 212 Query: 180 PKAGKTMLLQNIAQSIAY------NHPDCVLMVLLIDERPEEV-------TEMQRLVKGE 226 + GKT L + + + + I ++ V T+ + Sbjct: 213 RQTGKTALAIDTIINQKRFNEAQDESKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYSV 272 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT 286 +V++T + A + + K +I+ D +++ A AY + + Sbjct: 273 IVSATASDAAPLQYLAPYSGCAMGEYFRDKGKHALIIYDDLSKQAVAYRQMSLLLRRPPG 332 Query: 287 G-GVDANALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 + + R A + GGSLT + G + I + + Sbjct: 333 REAYPGDVFYLHSRLLERAAKMSPAMGGGSLTALPVIETQAG-DVSAYIPTNVISITDGQ 391 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDA 395 + L ++ K + PAI+ S +R T+ Q ++ + E+ A Sbjct: 392 IFLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAA 444 >UniRef50_P38606 V-type proton ATPase catalytic subunit A n=397 Tax=cellular organisms RepID=VATA_HUMAN Length = 617 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 119/315 (37%), Gaps = 31/315 (9%) Query: 117 NEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLI 176 + V + E + K + P+ + + RVLD P +G I Sbjct: 189 DVVLELEFEGVKEKFTMVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAI 248 Query: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------- 221 GKT++ Q++++ + V++ + ER E++E+ R Sbjct: 249 PGAFGCGKTVISQSLSKYSNSD----VIIYVGCGERGNEMSEVLRDFPELTMEVDGKVES 304 Query: 222 -LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA 280 + + +VA+T + P + I ++ + V ++ DS +R A A + Sbjct: 305 IMKRTALVANTSNMPVAAREASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGR 364 Query: 281 SGKVLT-GGVDANALHRPKRFFGAA------RNVEEGGSLTIIATALIDTGSKMDEVIYE 333 ++ G A R F+ A N E GS++I+ A+ G + + Sbjct: 365 LAEMPADSGYPAYLGARLASFYERAGRVKCLGNPEREGSVSIVG-AVSPPGGDFSDPVTS 423 Query: 334 EFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQEELQKMWILR-KIIHPM 390 G + L +K+A+++ FP++++ S ++ L + + LR K + Sbjct: 424 ATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALDEYYDKHFTEFVPLRTKAKEIL 483 Query: 391 GEIDAMEFLINKLAM 405 E + + ++ + Sbjct: 484 QEEEDLAEIVQLVGK 498 >UniRef50_UPI0001B43522 transcription termination factor Rho n=1 Tax=Listeria monocytogenes FSL J2-071 RepID=UPI0001B43522 Length = 170 Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats. Identities = 71/172 (41%), Positives = 112/172 (65%), Gaps = 6/172 (3%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQ- 59 +++ L++ + ++ +L + + +++ K+++IFA+LK +A+ F +GVLEI+ Sbjct: 4 LSIAYLESLTIKDIYSLAKEHKIAYYSKLTKRELIFALLKSNAEKEGFFFMEGVLEIIPN 63 Query: 60 DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEV 119 +GFGFLR +Y + +DIY+S SQIRRF LRTGD +SGK+RPPKE ERYF LL V V Sbjct: 64 EGFGFLRPI--NYSSSSEDIYISASQIRRFELRTGDRVSGKVRPPKENERYFGLLHVEAV 121 Query: 120 NFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG 171 N + PE A+ ++ F LTPL+ + ++ +E ++ R +DL SPIG G Sbjct: 122 NGENPEVAKERVHFPGLTPLYPDRQIHLET---EKYPISTRTIDLISPIGFG 170 >UniRef50_C4DDR2 Archaeal/vacuolar-type H+-ATPase subunit A n=2 Tax=Actinomycetales RepID=C4DDR2_9ACTO Length = 578 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 123/334 (36%), Gaps = 35/334 (10%) Query: 96 TISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTE 155 T++G++ RY A + V A+ + R R+E+ + Sbjct: 153 TLAGELEYLAPEGRYPAETVIARVAGQPVHMAQPWPVRRPR-----PVRNRLEQ--TAPL 205 Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 RVLDL P+ RG + GKT+LLQ +A+ + V++ + ER E Sbjct: 206 HTGQRVLDLLFPVPRGGSAAVPGGFGTGKTVLLQQVAKWCDAD----VIVYIGCGERGNE 261 Query: 216 VTEMQRLV--------------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 + E+ + + V+A+T + P + A+ + V+ Sbjct: 262 MAEVVAELLSLTDPRSGGRLADRTVVIANTSNMPMMAREASIHTGMTVAEYFRDMGLHVV 321 Query: 262 ILLDSITRLARAYNTVVPASGK-VLTGGVDANALHRPKRFFGAARNVE----EGGSLTII 316 ++ DS +R A A + + G A F+ A VE GS+T++ Sbjct: 322 LIADSTSRWAEALREFASRNRELPAEEGYPAGLASALAAFYERAGVVETLGGRIGSVTVV 381 Query: 317 ATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQ 374 A+ G + E + + L R +A R +P++ ++ S R E + Sbjct: 382 G-AVSPPGGDLTEPVTAYTERFVRCRWTLDRDLAYARHYPSVSWSGSFCRDAETIGAWHA 440 Query: 375 EELQKMWILR--KIIHPMGEIDAMEFLINKLAMT 406 + W R ++ + E D + L + T Sbjct: 441 AHGDRAWWARRERLTTVLSEADRLSALAELVGTT 474 >UniRef50_A5GCR1 H+-transporting two-sector ATPase, alpha/beta subunit, central region n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GCR1_GEOUR Length = 524 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 81/451 (17%), Positives = 157/451 (34%), Gaps = 64/451 (14%) Query: 5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQ----------------HAKSGED 48 +LK + +++ +GE M + + R+ ++ + + + Sbjct: 4 DLKGLKLYDMVRVGEAMLIGEVVRLEQERAVVQVYEDTRGLGVHEPAKGLDTPLTARLGP 63 Query: 49 IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRR---FNLRT-GDTISGK--IR 102 G+ + LQ L ++ D+Y R F LR GD + I Sbjct: 64 GLLSGMFDGLQRPMERLFRQCGPFICSGSDLY-PLELERPWRFFPLRRAGDEVVASDIIG 122 Query: 103 PPKEGERYFALLK-----VNEVNFDKPENARNKILFENL--------TPLHANSRLRMER 149 +EG L + + + + F + P+ R + Sbjct: 123 YVEEGAFRHPLTAGASGAIARLEDGEFNLTQPVGAFADGREITAIREWPVRKPRPYRKKL 182 Query: 150 GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI 209 R +D P+ RG + GKT+L Q++A+ A + +++ + Sbjct: 183 SPDLPLVTGQRAVDFLFPLARGGAAVFPGGFGTGKTVLEQSVAKFSAVD----LVVYVGC 238 Query: 210 DERPEEVTEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 ER E+ E+ + + VV +T + P + + A+ + Sbjct: 239 GERGNEMAELLDEFAALSDPWTGKPLMDRTIVVVNTSNMPVAAREASIYTAVTMAEYYRD 298 Query: 256 HKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVE----EG 310 V++L DSI+R A A + + ++ G R FF A VE Sbjct: 299 MGYHVLLLADSISRWAEALREISSSLEEMPGEEGYPTYLASRLSGFFERAGVVETMNCGI 358 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEEL 370 GSL++I + G E + + T L +A +R FPAI++ +S + E Sbjct: 359 GSLSMILSV-SPPGGDFTEPVTQACLRTAGAFFMLDTALAHRRHFPAINWFQSYSLYERN 417 Query: 371 LTTQ--EELQKMW--ILRKIIHPMGEIDAME 397 + E+ W +LR+ + +++ Sbjct: 418 IVRHFTAEISPRWEELLRRCREMLQREESLR 448 >UniRef50_Q1AVH7 ATP synthase subunit alpha n=71 Tax=cellular organisms RepID=ATPA_RUBXD Length = 526 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 59/376 (15%), Positives = 131/376 (34%), Gaps = 34/376 (9%) Query: 32 QDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNL 91 ++++ + + + + L + +D G + + D Y+ + + R ++ Sbjct: 46 SNVMYQEMVEFEDARGEKVIGLALNLEEDNVGVIIAGDDRYILEGSTVRRTG---RLASV 102 Query: 92 RTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN 151 G + G++ +P + R +I E P+ + + R + Sbjct: 103 PVGQGVLGRVINA----------------LGQPIDGRGEIQAEETRPVEIIAPGIIRRKD 146 Query: 152 G-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 210 + + +D PIGRGQR LI+ K GKT L + + + C+ + + Sbjct: 147 VDTPLQTGIKAIDSMIPIGRGQRELIIGDRKTGKTALAVDTIINQHDQNVKCIYVA--VG 204 Query: 211 ERPEEVT-------EMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 ++ V E + V+ ++ +PA + + +D +++ Sbjct: 205 QKDSAVAGVVAQLEEYGAMEYTTVINASASQPAPLQYLAPYAGCAIGEYFMHRGEDALVI 264 Query: 264 LDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEE---GGSLTIIATA 319 D +++ A AY ++ + + + R A + E GGSLT + Sbjct: 265 YDDLSKHAVAYRQMMLLLRRPPGREAYPGDIFYLHSRLLERAARMSEEYGGGSLTALPII 324 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK 379 G + I + ++ L + PAID S +R + + Sbjct: 325 ETKAG-DISAYIPTNVISITDGQIFLDLDLFNANQRPAIDVGLSVSRVGSSAQIKAMKKV 383 Query: 380 MWILRKIIHPMGEIDA 395 L+ + E+ + Sbjct: 384 AGTLKLDLSQYRELAS 399 >UniRef50_Q724W6 ATP synthase subunit alpha 1 n=17 Tax=Listeria RepID=ATPA1_LISMF Length = 498 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 59/292 (20%), Positives = 109/292 (37%), Gaps = 15/292 (5%) Query: 116 VNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRG 174 ++ E + K + PL + M + + + V+D +PIGRGQR Sbjct: 103 IDTTGKMLYEESEEKPTATS--PLFCVTPAIMTIDSVTRPLNTGLAVIDSITPIGRGQRQ 160 Query: 175 LIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV-----LLIDERPEEVTEMQRLVKGEVVA 229 LI+ ++GKT + + + + C+ + I E E + + VVA Sbjct: 161 LILGNRQSGKTQIAVDTIINQHDQNVHCIYVAIGLKAAYIAEVIETLRNHGAMEYSTVVA 220 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-G 288 + + + + A+ L + KDV+I+LD +T+ A AY + + Sbjct: 221 TAASDSLTAQYLTPYAGMAVAEALRDQGKDVLIILDDLTKHADAYRAITLLFNRPPGREA 280 Query: 289 VDANALHRPKRFFGAA--RNVE-EGGSLTIIATALIDT-GSKMDEVIYEEFKGTGNMELH 344 ++ + A N E GGS+T I +I+T + I + +L Sbjct: 281 YPGDSFYIHSSLLERAVQMNEEHGGGSITAI--PMIETLSDDVTAYIPTNVISITDGQLF 338 Query: 345 LSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 L + + PA+D S +R + L I+ E+ + Sbjct: 339 LKSDLFNRGQKPAVDVGVSVSRIGGDAQHPIIRKLSKNLTLILSQFEELKEL 390 >UniRef50_B5Y829 ATP synthase subunit alpha n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y829_COPPD Length = 493 Score = 188 bits (478), Expect = 4e-46, Method: Composition-based stats. Identities = 52/295 (17%), Positives = 101/295 (34%), Gaps = 29/295 (9%) Query: 135 NLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 193 + P+ ++ ER + +D+ P+G GQR LI+ + GKT L +I Sbjct: 117 QVYPVERPAKPLYERSRVNEPVETGIAAIDMLIPVGHGQRELILGDRQVGKTTLATDI-- 174 Query: 194 SIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVA----------STFDEPASRHVQVA 243 I D + + + I ++ V++ ++ V + +PA Sbjct: 175 LINQKGKDVIGVYVSIGQK---VSDTAAIINSFKVNDVMDQVVMVVAAASDPAIVRFLAP 231 Query: 244 EMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFG 302 A+ +E + VII+ D +++ A +Y + + + + R Sbjct: 232 YAGASIAEYFMEQGRKVIIVFDDLSKHAVSYRELTLLLRRPPGREAYPGDIFYAHSRLLE 291 Query: 303 AARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 362 A + GGS+T G I + +L L + PAI+ Sbjct: 292 RAAKLTNGGSITAFPICETQLG-DFSAYIPTNLISITDGQLFLDSGLFNAGRRPAINIGL 350 Query: 363 SGTRKEELLTTQEELQKMWILRKIIHPMGEI-----------DAMEFLINKLAMT 406 S +R + LR + E+ DA + ++++ T Sbjct: 351 SVSRVGGAAQYPAIRKLSSGLRSTLARYEELSEFTRFGGKLDDASQKILSRGERT 405 >UniRef50_P25705 ATP synthase subunit alpha, mitochondrial n=1593 Tax=cellular organisms RepID=ATPA_HUMAN Length = 553 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 62/406 (15%), Positives = 136/406 (33%), Gaps = 50/406 (12%) Query: 13 ELITLGENMGL-ENLARMRKQDIIFAILKQHAKSGEDIFGDGV----LEILQDGFGFLRS 67 +L G + + + +AR+ + A+ F G+ L + D G + Sbjct: 67 DLEETGRVLSIGDGIARVH------GLRNVQAEEM-VEFSSGLKGMSLNLEPDNVGVVVF 119 Query: 68 ADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENA 127 + + D + + + + ++ G+ + G++ ++ P + Sbjct: 120 GNDKLIKEGDIVKRTGAIV---DVPVGEELLGRVVDALGN----------AIDGKGPIGS 166 Query: 128 RNKILFENLTP-LHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTM 186 + + P + +R + +D PIGRGQR LI+ + GKT Sbjct: 167 KTRRRVGLKAPGIIPRISVR------EPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTS 220 Query: 187 LLQNIAQSIAY------NHPDCVLMVLLIDERPEEV-------TEMQRLVKGEVVASTFD 233 + + + + + I ++ V T+ + VV++T Sbjct: 221 IAIDTIINQKRFNDGSDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATAS 280 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDAN 292 + A + ++ K +I+ D +++ A AY + + + Sbjct: 281 DAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGD 340 Query: 293 ALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 349 + R A + GGSLT + G + I + ++ L ++ Sbjct: 341 VFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAG-DVSAYIPTNVISITDGQIFLETEL 399 Query: 350 AEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDA 395 K + PAI+ S +R T+ Q ++ + E+ A Sbjct: 400 FYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAA 445 >UniRef50_C0QV76 V-type ATP synthase subunit A n=3 Tax=Bacteria RepID=C0QV76_BRAHW Length = 587 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 56/253 (22%), Positives = 98/253 (38%), Gaps = 25/253 (9%) Query: 137 TPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 195 P+ + E+ + R +D +PI G G I P AGKT+L +A + Sbjct: 193 WPVKLTIKAYKEKPRPFKLLETGVRTIDTFNPITEGGTGFIPGPFGAGKTVLQHALATNA 252 Query: 196 AYNHPDCVLMVLLIDERPEEV----TEMQRLV----------KGEVVASTFDEPASRHVQ 241 + D ++M ER EV TE L+ + ++ +T + P + Sbjct: 253 ---NADLIIMTA-CGERANEVVEIFTEFPELIDPRTGRSLMERTTIICNTSNMPVAAREA 308 Query: 242 VAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRF 300 + + A+ V++L DS +R A+A + ++ + F Sbjct: 309 SVYVGMTIAEYYRSMGLKVLLLADSTSRWAQALREMSNRLEELPGPDAFPIDLPAIISSF 368 Query: 301 FGAAR----NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 356 + A N E GS+T I T G + E + E + LS+K A+ + +P Sbjct: 369 YARAGFVYLNNGETGSITFIGTV-SPAGGNLKEPVTESTRKAARCFYALSQKRADSKRYP 427 Query: 357 AIDYNRSGTRKEE 369 A+D S ++ E Sbjct: 428 AVDPLDSYSKYIE 440 >UniRef50_A6LA83 V-type ATPase, subunit A n=41 Tax=Bacteria RepID=A6LA83_PARD8 Length = 585 Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 105/274 (38%), Gaps = 34/274 (12%) Query: 155 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPE 214 + R +D +PI G G I P GKT+L I++ + ++++ ER Sbjct: 212 LETGVRTIDTVNPIVEGGTGFIPGPFGTGKTVLQHAISKQAEAD----IVIIAACGERAN 267 Query: 215 EV----TEMQRLV----------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260 EV TE LV + ++A+T + P + + A+ V Sbjct: 268 EVVEVFTEFPELVDPHTGRKLMERTIIIANTSNMPVAAREASVYTAMTIAEYYRSMGLKV 327 Query: 261 IILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAAR----NVEEGGSLTI 315 +++ DS +R A+A + ++ + F+ A N GS+T Sbjct: 328 LLMADSTSRWAQALREMSNRLEELPGPDAFPMDLSAIVANFYARAGFVHLNNNATGSVTF 387 Query: 316 IATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE------ 369 I T G + E + E K L ++ A+++ +PA++ S ++ E Sbjct: 388 IGTV-SPAGGNLKEPVTENTKKVARCFYALEQERADRKRYPAVNPIESYSKYIEYPEFQE 446 Query: 370 ---LLTTQEELQKMWILR-KIIHPMGEIDAMEFL 399 + E ++K+ ++ +++ + + L Sbjct: 447 YIAKHISPEWIEKVNEIKTRMLRGKEISEQINIL 480 >UniRef50_UPI0001C31DE0 transcription termination factor Rho n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31DE0 Length = 449 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 97/324 (29%), Positives = 151/324 (46%), Gaps = 43/324 (13%) Query: 50 FGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER 109 +GV+E+L +G GF+R A A D+YVS +Q+RR L GD +SG +R P+ ER Sbjct: 152 VVEGVVELLGNGSGFVRLAPGGEAADG-DVYVSAAQVRRCELVAGDKVSGPVRAPRRSER 210 Query: 110 YFALLKVNEVNFDKPENARNK-ILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPI 168 Y +L++V+ +N + A ++ F+ L A R ++ ED+T + ++ +PI Sbjct: 211 YPSLVRVDTINGKSADEAGSEGTKFDELPAAFATERFALD-----AEDVTVKAIEWLTPI 265 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVV 228 GRG R IV +AGKT L+ +A + V+L+ RPEE+TE Sbjct: 266 GRGSRVSIVGTARAGKTEALRRLADHL-VKLDGVETSVVLVGARPEEITEWTGGPVEVAA 324 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGG 288 + +F A Q E I+ KR+ + ++L+D++ Sbjct: 325 SLSFAASADAQSQAVERAIDNGKRVAARGGNAVVLIDTL--------------------- 363 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 D ++ AARN+ +GGSLT+IATA G + V L + Sbjct: 364 -DGVHSAAARKALAAARNIADGGSLTVIATASEPLGGETTVV-------------ALDAE 409 Query: 349 IAEKRVFPAIDYNRSGTRKEELLT 372 +A FPA+D SGT + ELL Sbjct: 410 LAGTGRFPALDLLASGTLRPELLV 433 >UniRef50_A9R780 Flagellum-specific ATP synthase n=1 Tax=Yersinia pestis Angola RepID=A9R780_YERPG Length = 389 Score = 185 bits (469), Expect = 4e-45, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 96/279 (34%), Gaps = 66/279 (23%) Query: 119 VNF-DKPENARNK-----ILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ 172 +N +P + + + L + L +H R R + D+ ++ IG+GQ Sbjct: 106 INGLGEPLDGKGQLGGSTPLQQQLPQIHPLQR----RAVDTPLDVGVNAINGLLTIGKGQ 161 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTF 232 R ++A GK++LL I + + Sbjct: 162 RVGLMAGSGVGKSVLLGMITRYTQADVVVVAAPAD------------------------- 196 Query: 233 DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDA 291 E ++ E+ A + DV++L+DS+TR A A + + G+ T G Sbjct: 197 -ESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPP 255 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 +A R +A N G++T I T L AE Sbjct: 256 SAFSIIPRLAESAGNSSGNGTMTAIYTVL-----------------------------AE 286 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390 +PAID ++S +R + ++ + +L++ Sbjct: 287 AGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYADY 325 >UniRef50_Q4S553 Chromosome 6 SCAF14737, whole genome shotgun sequence n=9 Tax=Deuterostomia RepID=Q4S553_TETNG Length = 757 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 66/384 (17%), Positives = 134/384 (34%), Gaps = 69/384 (17%) Query: 73 LAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132 G DI VSP + R PP++ F + V + E + K Sbjct: 196 PPGHYDISVSPPRPRLHRDP----------PPRDARVCFCQ---DVVMELEFEGVKEKFT 242 Query: 133 FENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIA 192 + P+ + + RVLD P +G I GKT++ Q+++ Sbjct: 243 MVQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGASGCGKTVISQSLS 302 Query: 193 QSIAYNHPDCVLMVLLIDERPEEVTEMQR----------------LVKGEVVASTFDEPA 236 + + V++ + ER E++E+ R + + +VA+T + P Sbjct: 303 KYSNSD----VIIYVGCGERGNEMSEVLRDFPELTMEVDGKTESIMKRTALVANTSNMPV 358 Query: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALH 295 + I ++ + +V ++ DS +R A A + ++ G A Sbjct: 359 AAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGA 418 Query: 296 RPKRFFGAA------RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME------- 342 R F+ A N E GS++I+ A+ G + + G ++ Sbjct: 419 RLASFYERAGRVKCLGNPEREGSVSIVG-AVSPPGGDFSDPVTSATLGIVQVQKVPTSLS 477 Query: 343 ------------------LHLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQEELQKMWI 382 L +K+A+++ FP++++ S ++ L + + Sbjct: 478 KRPGFSPDWLLVCPPQVFWGLDKKLAQRKHFPSVNWLISYSKYTRALDEYYDKHFPEFVP 537 Query: 383 LR-KIIHPMGEIDAMEFLINKLAM 405 LR K + E + + ++ + Sbjct: 538 LRTKAKEILQEEEDLAEIVQLVGK 561 >UniRef50_Q6MAJ5 V-type ATP synthase alpha chain n=39 Tax=Bacteria RepID=VATA_PARUW Length = 593 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 107/280 (38%), Gaps = 26/280 (9%) Query: 116 VNEVNFDKPENARNKILFENL--TPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQR 173 V+ V + + + F + P+ + D R++D P+ +G Sbjct: 182 VDTVVAKAIDESGQEHSFTMVQKWPVKNALIHGEKIKPTKMMDTGERIIDTQFPLMKGGT 241 Query: 174 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR------------ 221 P AGKT+L ++++ A + +++ + ER EV E+ R Sbjct: 242 FCTPGPFGAGKTVLQHHLSKYAAVD----IVLFVACGERAGEVVEVLREFPHLIDPHTDE 297 Query: 222 --LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVP 279 + + ++ +T P + M I A+ + DV++L DS +R A+A + Sbjct: 298 ALMKRTVIICNTSSMPVAARESSIYMGITIAEYYRQMGLDVLVLADSTSRWAQALREMSG 357 Query: 280 ASGK-VLTGGVDANALHRPKRFFGAAR----NVEEGGSLTIIATALIDTGSKMDEVIYEE 334 + A R F+ + + GS+T I A+ G +E + + Sbjct: 358 RLEEIPGEEAFPAYLSSRIAEFYERSGVVSLRHGKPGSIT-IGGAVSPAGGNFEEPVTQA 416 Query: 335 FKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQ 374 L LSR ++ R +PAID S ++ + + + Sbjct: 417 TLSVVGAFLGLSRARSDSRRYPAIDPLLSWSKYVDTVGNE 456 >UniRef50_Q4JUJ8 ATP synthase subunit alpha n=54 Tax=Actinobacteridae RepID=ATPA_CORJK Length = 545 Score = 180 bits (458), Expect = 7e-44, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 117/326 (35%), Gaps = 26/326 (7%) Query: 91 LRTGDTIS--GKIRPPKEGERYFALLKVNEVN-FDKPENARNKILFENLTPLHANSRLRM 147 L+ GD + G++ GE++ L +V +N + + I E L + + Sbjct: 85 LKEGDEVKRTGEVLSIPVGEKF--LGRV--INPLGQAIDGLGDIESEEERALELQAPSVL 140 Query: 148 ERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP------ 200 R + +D +PIGRGQR LI+ K GKT + + + N Sbjct: 141 MRQPVEEPMQTGIKAIDAMTPIGRGQRQLIIGDRKTGKTSVCIDTILNQRDNWATGDPKQ 200 Query: 201 DCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRL 253 + + + ++ + +++ + +VA+ + A + Sbjct: 201 QVRCIYVAVGQKGSTIASIRKTLEDHGALEYTTIVAAPASDSAGFKWLAPFTGAALGQHW 260 Query: 254 VEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE---E 309 + K V+++ D +T+ A AY + + + + R A + Sbjct: 261 MYQGKHVLVIYDDLTKQAEAYRAISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELG 320 Query: 310 GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE 369 GGSLT + + + I + ++ L + + V PAI+ S +R Sbjct: 321 GGSLTALPIIETKA-NDVSAFIPTNVISITDGQVFLESDLFNQGVRPAINVGVSVSRVGG 379 Query: 370 LLTTQEELQKMWILRKIIHPMGEIDA 395 T+ + LR + +++A Sbjct: 380 AAQTKGMKKVSGSLRLDLAAYRDLEA 405 >UniRef50_C1TMJ4 Archaeal/vacuolar-type H+-ATPase subunit A n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMJ4_9BACT Length = 589 Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 113/288 (39%), Gaps = 34/288 (11%) Query: 143 SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC 202 RL ++R RVLD P+ G ++ GKT+ Q+IA+ + + D Sbjct: 198 KRLNLDR----PLITGQRVLDTLFPLALGGAAVLPGGFGTGKTVTQQSIAK---WCNADV 250 Query: 203 VLMVLLIDERPEEVTEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIE 248 ++ + ER E+TE+ + + ++A+T + P + + I Sbjct: 251 IIYIG-CGERGNEMTEVLEEFPELKDPYRDAPLMDRMILIANTSNMPVAAREASVYLGIT 309 Query: 249 KAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARN- 306 A+ + +V I+ DS +R A A + ++ G A R ++ + Sbjct: 310 MAEYYRDMGLNVAIMADSTSRWAEALREIGGRLEEMPGEEGYPAYLGTRLAEYYERSGRS 369 Query: 307 -----VEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYN 361 E GS+T+I A+ G E + + + L + +A++R FP+I +N Sbjct: 370 VLLGSPEREGSITVI-NAVSPAGGDFSEPVTQASLRLSGVFWALDKALAQQRHFPSIQWN 428 Query: 362 RSGTR---KEELLTTQEELQKMWILRKII-HPMGEIDAMEFLINKLAM 405 +S + + E +E + L+ + + + L+ + Sbjct: 429 QSYSLYEQEMERFYREEVSDLWYELKAFLRGRLALERELRNLVQLVGR 476 >UniRef50_C8W8D3 ATP synthase subunit alpha n=2 Tax=Atopobium RepID=C8W8D3_ATOPD Length = 557 Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats. Identities = 61/339 (17%), Positives = 116/339 (34%), Gaps = 39/339 (11%) Query: 93 TGDTISGKIRPPKEGERYFALLKVNE-----------VN-FDKPENARNKILFENLTPLH 140 G + G++ KEG+ +V + VN +P + I + P+ Sbjct: 85 VGAVLFGEVSEIKEGDECRTTGRVMDIPAGYDMLGRVVNPLGQPIDGLGAIHATHRRPIE 144 Query: 141 ANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 199 + M+R +D P+GRGQR LI+ K GKT + I + + Sbjct: 145 FKAPGIMQRQPVCEPVQTGLLAIDAMVPVGRGQRELIIGDRKTGKTAIA--IDAIVNQKN 202 Query: 200 PDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKR 252 D + + + I ++ V ++ + K +VA+T + A + Sbjct: 203 TDMICIYVAIGQKASTVANIRESLSRHGVLDKTVIVAATAADSAPMQYIAPMAGAAIGEF 262 Query: 253 LVEHKKD------------VIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKR 299 + + KD V+++ D +++ A AY + + + + R Sbjct: 263 FMYNDKDGKPADKDHPGGHVLVVYDDLSKQAVAYRQMSLTLHRPPGREAYPGDIFYLHSR 322 Query: 300 FFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 356 A + GSLT + G + I + +++L + + P Sbjct: 323 LLERACKLSDENGAGSLTALPIIETQEG-DVSAYIPTNVISITDGQIYLQSNLFFQGQRP 381 Query: 357 AIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDA 395 A+D S +R + Q LR + E A Sbjct: 382 AVDVGISVSRVGGDAQVKAMKQVAGTLRLDLASYREKQA 420 >UniRef50_Q9GS23 ATP synthase subunit alpha n=10 Tax=Trypanosomatidae RepID=Q9GS23_TRYBB Length = 585 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 59/329 (17%), Positives = 118/329 (35%), Gaps = 33/329 (10%) Query: 87 RRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLR 146 + ++ G + GK+ P E L+ ++L L + + Sbjct: 125 QLLHIPVGAGVLGKVVNPLGHEVPVGLV-----------TRSRRLLDSTLGKVDTGAPNI 173 Query: 147 MERGNGSTEDLTA-RVLDLASPIGRGQRGLIV-APPKAGKTMLL-QNIAQSIAYNHP--- 200 + R + LT + +D PIGRGQR LI + GKT + I + N Sbjct: 174 VSRSPVNYNLLTGFKAVDTMIPIGRGQRELICNGDRQTGKTSIAVSTIINQVRINQQILS 233 Query: 201 --DCVLMVLLIDERPEEVTEMQRLVKG-------EVVASTFDEPASRHVQVAEMVIEKAK 251 + + + I +R V + RL++ V+A+T EPA + + Sbjct: 234 KNAVISIYVSIGQRCSNVARIHRLLQSYGALRYTTVMAATAAEPAGLQYLAPYAGVTMGE 293 Query: 252 RLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV--- 307 + + + + D +++ A AY + + + + R A + Sbjct: 294 YFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPG 353 Query: 308 EEGGSLTIIATALIDTGS-KMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 + GGS+T + +++T S + I + +++L K+ PA++ S +R Sbjct: 354 KGGGSVTAL--PIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSR 411 Query: 367 KEELLTTQEELQKMWILRKIIHPMGEIDA 395 L+ I+ ++ A Sbjct: 412 VGSSAQNAAMKGVAGKLKGILAEYRKLAA 440 >UniRef50_A3NN58 ATP synthase subunit alpha 2 n=51 Tax=Proteobacteria RepID=ATPA2_BURP6 Length = 670 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 58/315 (18%), Positives = 103/315 (32%), Gaps = 21/315 (6%) Query: 92 RTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN 151 RTG + P G L + ++ P +A + + E P L E Sbjct: 101 RTGAVLEVPAGPQLLGRVVDPLGR--PLDGGAPLDAAHTLPIERAAPAIIERDLVSE--- 155 Query: 152 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 211 D ++D IGRGQR LI+ GKT L I + H D + + + I + Sbjct: 156 --PLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLA--IDAIVNQRHSDVICVYVAIGQ 211 Query: 212 RPEEVTEMQRLVK-------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILL 264 R V + V+ V + A+ + + ++++ Sbjct: 212 RASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDRGQHALVVV 271 Query: 265 DSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE---EGGSLTIIATAL 320 D +T+ A + + + + + + R A + GGSL+ + A Sbjct: 272 DDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGSLSALPIAE 331 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 D G + I + ++ L + PA+D S +R Sbjct: 332 TDAG-NLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQHPALRAAS 390 Query: 381 WILRKIIHPMGEIDA 395 LR E++A Sbjct: 391 GRLRLDYAQFLELEA 405 >UniRef50_D1RAU6 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RAU6_9CHLA Length = 595 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 61/332 (18%), Positives = 122/332 (36%), Gaps = 43/332 (12%) Query: 111 FALLKVNEVNFDKPENARNKILFENL--TPLHANSRLRMERGNGSTEDLTARVLDLASPI 168 V+ V + + F + P+ + D R++D P+ Sbjct: 179 PGAYNVDTVVARVEDEKGQEHAFTMVQKWPIKNALFEGEKIKPTKMMDTGLRIIDTQFPV 238 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR------- 221 +G P AGKT++ ++++ + + +++V ER EV E+ R Sbjct: 239 MKGGTFCTPGPFGAGKTVIQHHLSKYSSVD----IVVVTACGERAGEVVEILREFPHLTD 294 Query: 222 -------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAY 274 + + ++ +T P + + + A+ + DV++L DS +R A+A Sbjct: 295 PHTGNTLMERTVIICNTSSMPVAARESSIYLGMTIAEYYRQMGLDVLLLADSTSRWAQAL 354 Query: 275 NTVVPASGK-VLTGGVDANALHRPKRFFGAARNV----EEGGSLTIIATALIDTGSKMDE 329 + + A R F+ + + E+ GS+T + A+ G +E Sbjct: 355 REMSGRLEEIPGEEAFPAYLASRIAAFYERSGVIALRNEKQGSVT-VGGAVSPAGGNFEE 413 Query: 330 VIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL----------TTQEELQK 379 + + L LSR+ ++ R +PAID S ++ + + Q + Sbjct: 414 PVTQATLAVVGAFLGLSRERSDSRRYPAIDPLISWSKYIDQVAKEMDSQLEGWGQVVKKA 473 Query: 380 MWILRKIIHPMGEID-------AMEFLINKLA 404 ILR+ ++ A+E LI L Sbjct: 474 ANILRRGDEIGKRMEVVGEEGTALEDLILYLK 505 >UniRef50_B8ZR40 ATP synthase subunit alpha n=56 Tax=Bacteria RepID=ATPA_MYCLB Length = 558 Score = 177 bits (449), Expect = 7e-43, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 111/322 (34%), Gaps = 27/322 (8%) Query: 92 RTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN 151 RTGD +S + G L +P + R I E L + ++R + Sbjct: 93 RTGDVLSVPVGEAFMGRVVNPL--------GQPIDGRGDIEAEARRALELQAPSVVQRQS 144 Query: 152 G-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN------HPDCVL 204 + +D +PIGRGQR L++ K GKT + + + N Sbjct: 145 VKEPLQTGIKAIDAMTPIGRGQRQLVIGDRKTGKTAVCVDTILNQRQNWESGDPKRQVRC 204 Query: 205 MVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK 257 + + I ++ + ++R + +VA+ + A A+ + Sbjct: 205 VYVAIGQKGTTIASVRRALEEGGAMDYTTIVAALASDSAGFKWLAPYTGSAIAQHWMYDG 264 Query: 258 KDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE---EGGSL 313 K V+I+ D +T+ A AY + + + + R + GGSL Sbjct: 265 KHVLIVFDDLTKQAEAYRAISLLLRRPPGREAYPGDVFYLHSRLLERCAKLADHLGGGSL 324 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTT 373 T + + + I + + L + + V PAI+ S +R Sbjct: 325 TGLPIIETKA-NDISAYIPTNVISITDGQCFLETDLFNQGVRPAINVGVSVSRVGGAAQI 383 Query: 374 QEELQKMWILRKIIHPMGEIDA 395 + + LR + E++A Sbjct: 384 KAMKEVAGSLRLDLSQYRELEA 405 >UniRef50_A2W3Z6 ATPase FliI/YscN n=1 Tax=Burkholderia cenocepacia PC184 RepID=A2W3Z6_9BURK Length = 386 Score = 176 bits (448), Expect = 1e-42, Method: Composition-based stats. Identities = 51/180 (28%), Positives = 74/180 (41%), Gaps = 12/180 (6%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTE-DLTARVLDLASPIGRGQRGLIVAPP 180 +P + + + + R T RV+D +G GQR I AP Sbjct: 41 GRPLDDLGPVTGAAWVSTQQDPPNPLARKMIDTPFPTGVRVIDGLMTLGIGQRVGIFAPS 100 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFD 233 GK+ LL IA+ + V ++ L+ ER EV E + VV ST D Sbjct: 101 GVGKSTLLGMIARGAQAD----VNVIALVGERGREVREFIEHSLSPEVRARSIVVVSTSD 156 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANA 293 PA V+ A + A+ + K V++L+DS+TR ARA V ASG+ T Sbjct: 157 RPAMERVKSALVATAIAEHFRDAGKRVLLLVDSLTRFARAQREVGLASGEPPTRRSFPAV 216 >UniRef50_Q3A946 ATP synthase subunit beta n=5 Tax=Bacteria RepID=ATPB_CARHZ Length = 473 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 124/301 (41%), Gaps = 17/301 (5%) Query: 122 DKPENARNKILFENLTPLH-ANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 +P + + + ++ P+H L + + +V+DL P +G + + Sbjct: 101 GEPIDGKGPVESDHYYPIHRPAPPLEEQSTRAEILETGIKVIDLLVPFLKGGKIGLFGGA 160 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPE-------EVTEMQRLVKGEVVASTFD 233 GKT+++ + +IA H + + + ER E+ E L K +V + Sbjct: 161 GVGKTVIVMELINNIAKQH-GGISVFAGVGERTREGNDLYHEMKEAGVLDKTIMVFGQMN 219 Query: 234 EPASRHVQVAEMVIEKAKRLV-EHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDA 291 EP ++V + A+ E +DV++ +D+I R +A + V G++ + G Sbjct: 220 EPPGVRLRVGLTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQP 279 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 + + GS+T + + + + + + LSR+IAE Sbjct: 280 TLATEMGQLQERITST-RKGSITSVQAVYVPA-DDLTDPAPATTFAHLDATVVLSRQIAE 337 Query: 352 KRVFPAIDYNRSGTR-KEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 ++PA+D S +R + + +E Q +++++ E ++ +I L M + +D Sbjct: 338 LGIYPAVDPLDSTSRILDPHIVGEEHYQVARGVQRVLQRYKE---LQDIIAILGMDELSD 394 Query: 411 D 411 + Sbjct: 395 E 395 >UniRef50_Q2S432 ATP synthase subunit alpha n=4 Tax=Bacteria RepID=ATPA_SALRD Length = 551 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 55/353 (15%), Positives = 111/353 (31%), Gaps = 51/353 (14%) Query: 93 TGDTISGKIRPPKEGERYFALLKVNEVN------------FDKPENARNKILFENLT-PL 139 G + G + EG+ ++ V +P + + I E PL Sbjct: 75 VGVILFGDVDAVSEGDEARRTGRIASVGVNENMLGRVIDPLGRPLDGKGPIEGEKTVLPL 134 Query: 140 HANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 198 + + R + +D P+GRGQR L++ + GKT +L + + Sbjct: 135 ERKAPGVIYREPVEEPLQTGIKAIDSMIPVGRGQRELVIGDRQTGKTAVLTDTIINQKKT 194 Query: 199 HPD-------CVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAE 244 H + + + + ++ V ++QR L +V ++ P Sbjct: 195 HQEGTDSGDPVYCVYVAVGQKDSTVAQVQRDLERNGALEHTVIVNASASMPTPLQYVAPF 254 Query: 245 MVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGA 303 + + +D ++ D +++ A AY + + + + R Sbjct: 255 AGACIGEYFRDTGRDSLVCFDDLSKQAVAYRELSLLLRRPPGREAYPGDIFYLHSRLLER 314 Query: 304 ARNV---------------------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 A + + GGSLT + G + I + + Sbjct: 315 AAKIISDEEVATQMNGLPDALQDKVQGGGSLTALPVIETQAG-DVSAYIPTNVISITDGQ 373 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDA 395 ++L + + PAID S +R LR + E++A Sbjct: 374 IYLETDLFNSGIRPAIDVGNSVSRVGGSAQIDAMKDVASTLRIDLSQYRELEA 426 >UniRef50_Q2SNG7 ATP synthase subunit alpha 1 n=10 Tax=Bacteria RepID=ATPA1_HAHCH Length = 494 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 122/343 (35%), Gaps = 34/343 (9%) Query: 54 VLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFAL 113 V ++ ++ G + + L +++ + R L D++ G++ P Sbjct: 67 VFDLCEELVGAVILQQTGSLTAGQEVHRTR---RPLGLLAHDSLLGRVIDPT-------- 115 Query: 114 LKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQ 172 +P + ++ + L++ + +ER R++D PIGRGQ Sbjct: 116 --------GRPLDGQSPLHEGAWVNLNSPTPAIVERDFVHEPLYTGIRMIDAMIPIGRGQ 167 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE-RPEEVTEMQRLVK------G 225 R LI+ G+T + N + D + +LI + R V MQ L + Sbjct: 168 RQLIIGDEGLGRTSIALNAV--LHQKDKDVRCIYVLIGQKRGAAVNVMQTLQRHGADAYT 225 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 +V + P A + + V+++ D ++ AR+Y + + Sbjct: 226 TLVVADAGSPPGLQYLAPFAGSALASHWMRQGRHVLMVYDDLSSHARSYRELSLLLRRPP 285 Query: 286 TG-GVDANALHRPKRFFGAARNV---EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNM 341 + R A + + GGSLT + A G ++ I + Sbjct: 286 GREAYPGDVFSVHARLLEQATCLSPEQGGGSLTALPIAETQQG-EIAAYIPTNLISITDG 344 Query: 342 ELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILR 384 +++L R + V PAID RS +R + ++ Sbjct: 345 QIYLERSLFAAGVRPAIDVGRSVSRIGGKAQHPAIKHEAIRMK 387 >UniRef50_A6QSP8 Vacuolar ATP synthase catalytic subunit A n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6QSP8_AJECN Length = 636 Score = 173 bits (440), Expect = 7e-42, Method: Composition-based stats. Identities = 63/406 (15%), Positives = 153/406 (37%), Gaps = 51/406 (12%) Query: 32 QDIIFAILKQHAKSGEDIFGD--GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRF 89 ++ +++ A + G++E + DG ++ + IY+ Sbjct: 136 DQLVGEVIRIDADKATIQVYEETGLMETIYDG---IQRPLKAISDASQSIYIP------- 185 Query: 90 NLRTGDTISGKIRPPKEGERYFALLKV-NEVNFDKP--ENARNKILFENLTPLHANSRLR 146 G +I R K + A KV + + N +L ++ L +R Sbjct: 186 ---RGISIPALDREKKWDFK-PANFKVGDHITGGDIWGSVWENSLLNDHKILLPPRARGT 241 Query: 147 MER-GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 205 + R + + ++L++ +G I GKT++ Q++++ + +++ Sbjct: 242 ITRIAGPGSYTVDEKLLEVEFDGVQGGTVCIPGAFGCGKTVISQSVSKFSNSD----IIV 297 Query: 206 VLLIDERPEEVTEM----------------QRLVKGEVVASTFDEPASRHVQVAEMVIEK 249 + ER E+ E+ + + ++A+T + P + I Sbjct: 298 YVGCGERGNEMAEVLMDFPELSINIDGRKEPIMKRTCLIANTSNMPVAAREASIYTGITV 357 Query: 250 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARN-- 306 A+ + K+V ++ DS +R A A + G++ G A + F+ A Sbjct: 358 AEYFRDQGKNVAMMADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGLSI 417 Query: 307 ----VEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 362 E GS++I+ A+ G + + G + L +K+A+++ FP+I+ + Sbjct: 418 ALGSPERKGSVSIVG-AVSPPGGDFSDPVTSSTLGIVQVFWGLDKKLAQRKHFPSINTSV 476 Query: 363 SGTRKEELL---TTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 S ++ +L ++ + + +I + + ++ ++ + Sbjct: 477 SYSKYTNVLDKYYAKDHPEFPRLRDRIKELLTNSEDLDQVVQLVGK 522 >UniRef50_A3FPS2 ATP synthase subunit alpha n=2 Tax=Cryptosporidium RepID=A3FPS2_CRYPV Length = 639 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 106/296 (35%), Gaps = 24/296 (8%) Query: 90 NLRTGDTISGK---IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLR 146 N+R GD + + P E L +V + + + + I E + + Sbjct: 203 NIRKGDQVISTNTIVNCPVGKE---LLGRVVDALGNPIDGKPSIISLEKRE-IDVKAPGI 258 Query: 147 MERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC--- 202 M+R + +D PIG GQR IV + GKT L+ +I + + D Sbjct: 259 MDRKPINEQLITGIKFIDSLIPIGLGQREAIVGDRQTGKTSLVLDIILNQRKFYDDIKTR 318 Query: 203 -VLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV 254 + + I ++ V ++ + L V+A+T AS + Sbjct: 319 KYCIYVAIGQKRSSVAQIVKILEKYDALKYTIVIAATASNAASLQFLAPFTGCTMGEWFR 378 Query: 255 EHKKDVIILLDSITRLARAYNTVVPASGKVLTGG-VDANALHRPKRFFGAARNV---EEG 310 ++ + II+ D +++ A AY + + + + R + + + G Sbjct: 379 DNGQHCIIVYDDLSKQANAYRQISLLLRRPPGRESYPGDIFYIHSRLLERSSKLSDEKGG 438 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 GSLT + + +K I + ++ L + K PA + S +R Sbjct: 439 GSLTALPIVETQS-NKFSSFIPTNITSITDGQIVLDSDLFFKGNRPAFNLGLSISR 493 >UniRef50_A7HDG9 V-type ATP synthase alpha chain n=2 Tax=Deltaproteobacteria RepID=VATA_ANADF Length = 578 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 52/249 (20%), Positives = 97/249 (38%), Gaps = 24/249 (9%) Query: 150 GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI 209 RVLD P+ G ++ GKT+L Q++A+ A + V++ + Sbjct: 198 APDVPFLTGQRVLDCFFPVSAGGTAMVPGGFGTGKTVLEQSLAKHAAAD----VVVYVGC 253 Query: 210 DERPEEVTEMQRLV--------------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 ER E+ E+ + + +V +T + P + A+ + Sbjct: 254 GERGNEMAEVLDELPKLEDPRSGGPLLGRTVLVVNTSNMPVAAREASIYTGCTIAEYFRD 313 Query: 256 HKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVE----EG 310 + V +++DS +R A A + ++ G R RF+ A VE Sbjct: 314 MGRSVALMIDSTSRWAEALREISARLEEMPGEEGYPTYLASRLARFYERAGRVETLGCGE 373 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEEL 370 G++TI+ A+ G + E + + LS +A +R +PA+D+ S + + E Sbjct: 374 GAVTIVG-AVSPPGGDLSEPVTQCSLRATGALWALSADLAHRRHYPAVDWAISFSLEAER 432 Query: 371 LTTQEELQK 379 L E + Sbjct: 433 LRGWFEREA 441 >UniRef50_A1SHI9 ATP synthase subunit alpha n=2145 Tax=cellular organisms RepID=ATPA_NOCSJ Length = 547 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 96/292 (32%), Gaps = 19/292 (6%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPP 180 KP + +I E L + M+R + + +D +PIGRGQR LI+ Sbjct: 116 GKPIDGLGEIEAETRRALELQAPTVMQRKSVHEPLATGIKAIDSMTPIGRGQRQLIIGDR 175 Query: 181 KAGKTMLLQNIAQSIAYN------HPDCVLMVLLIDERPEEVTEMQR-------LVKGEV 227 GKT + + + N + + I ++ + ++ L + Sbjct: 176 ATGKTTIAIDTIINQKQNWESGDPAKQVRCIYVAIGQKGSTIASVRGALEEAGALEYTTI 235 Query: 228 VASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG 287 VAS + A + + K V+I+ D +T+ A AY V + Sbjct: 236 VASPASDSAGFKYLAPYTGSAIGQHWMYDGKHVLIIFDDLTKQAEAYRAVSLLLRRPPGR 295 Query: 288 -GVDANALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 + + R + GS+T + + + I + ++ Sbjct: 296 EAYPGDVFYLHSRLLERCAKLSDDMGAGSMTGLPIIETKA-NDVSAYIPTNVISITDGQI 354 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDA 395 L + PAID S +R T+ L+ + ++A Sbjct: 355 FLQSDLFASNQRPAIDVGVSVSRVGGSAMTKAMKAVTGSLKVDLAQFRAMEA 406 >UniRef50_Q98QB7 ATP synthase subunit alpha 2 n=1 Tax=Mycoplasma pulmonis RepID=ATPA2_MYCPU Length = 513 Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 100/251 (39%), Gaps = 12/251 (4%) Query: 152 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 211 + +D+ PIG+GQR LI+ K GKT + + + N D ++ + I Sbjct: 126 NEPLETGIFSIDILLPIGKGQRQLILGDSKTGKTSIALSTMINQKEN--DIKIIYVSIGL 183 Query: 212 RPEEVTEMQRLVKGEVVA-------STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILL 264 + ++ + + + + +A ++ D + + + + A+ +++ +DV+I+ Sbjct: 184 KSNDLKRIYKTIVEQKIAHKTILMHASSDNS-FQQFLIPYVAMAHAENIMQSGEDVLIIF 242 Query: 265 DSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDT 323 D +T A + +GK + + + + A + G S+T Sbjct: 243 DDLTNHANVLREIALLTGKPVGKEAFPGDLFYSHSKLLERAGKFKNGYSITCFPIVRT-I 301 Query: 324 GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWIL 383 + M ++ + ++ + +I ++ + PAID S +R + + + + Sbjct: 302 NNDMTSLLASNIASITDGQIVTNSEIKDQGILPAIDIGLSVSRTGSSVQSVSLSKIAIEI 361 Query: 384 RKIIHPMGEID 394 KI + + Sbjct: 362 SKIYSKYKQNE 372 >UniRef50_C1H944 Vacuolar ATP synthase catalytic subunit A n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1H944_PARBA Length = 726 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 68/399 (17%), Positives = 148/399 (37%), Gaps = 64/399 (16%) Query: 46 GEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS-----PSQIRR-------FNLRT 93 E G G++E + DG ++ + IY+ P+ R NL+ Sbjct: 178 EETELGPGLMETIYDG---IQRPLKAISDASGSIYIPRGISIPALDREKKWDFKPANLKV 234 Query: 94 GDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERG-NG 152 GD I+G E +LL +++ P AR I + +E +G Sbjct: 235 GDHITGGDIWGSVWE--NSLLDDHKI--LLPPRARGTITRIAGPGSYTVDEKLLEVEFDG 290 Query: 153 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 212 + + V I GKT++ Q++++ + +++ + ER Sbjct: 291 KRYEYSGTVC-------------IPGAFGCGKTVISQSVSKFSNSD----IIVYVGCGER 333 Query: 213 PEEVTEM----------------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH 256 E+ E+ + + ++A+T + P + I A+ + Sbjct: 334 GNEMAEVLMDFPELSITIDGRKEPIMKRTCLIANTSNMPVAAREASIYTGITVAEYFRDQ 393 Query: 257 KKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARN------VEE 309 K+V ++ DS +R A A + G++ G A + F+ A + Sbjct: 394 GKNVAMMADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGKSIALGSPKR 453 Query: 310 GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE 369 GS++I+ A+ G + + G + L +K+A+++ FP+I+ + S ++ Sbjct: 454 IGSVSIVG-AVSPPGGDFTDPVTTSTLGIVQVFWGLDKKLAQRKHFPSINTSVSYSKYTN 512 Query: 370 LL---TTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 +L +E + + +I + + ++ ++ + Sbjct: 513 VLDKYYAKEHPEFPRLRNRIRELLTNSEDLDQVVQLVGK 551 >UniRef50_Q2RV20 ATP synthase subunit alpha n=257 Tax=cellular organisms RepID=ATPA_RHORT Length = 510 Score = 171 bits (433), Expect = 6e-41, Method: Composition-based stats. Identities = 50/325 (15%), Positives = 108/325 (33%), Gaps = 21/325 (6%) Query: 90 NLRTGDTISGKIRPPKEGERYFALL-KVNEVNFDKPENARNKILFENLTPLHANSRLRME 148 ++ GD + + + + LL +V + + + + + E + Sbjct: 81 GIKEGDVVK-RTQTIVDVPVGKGLLGRVVDGLGNPIDGKGDLVDVERKRAEVKAPGIIPR 139 Query: 149 RGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY-------NHPD 201 + + +D PIGRGQR LI+ + GKT ++ + + + Sbjct: 140 KSVHEPVQTGIKAIDSLIPIGRGQRELIIGDRQTGKTAVILDTILNQKAVNDKAKDDSEK 199 Query: 202 CVLMVLLIDERPEEVT-------EMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV 254 + + + ++ V + L VVA+T EPA + Sbjct: 200 LFCVYVAVGQKRSTVAQVVKVLADHGALDYTIVVAATASEPAPLQFLAPYTGCTMGEFFR 259 Query: 255 EHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV---EEG 310 ++ +I D +T+ A AY + + + + R A + Sbjct: 260 DNGMHAVIFYDDLTKQAVAYRQMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLNDDNGA 319 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEEL 370 GSLT + + + + I + ++ L + K + PA++ S +R Sbjct: 320 GSLTALP-VIETQANDVSAYIPTNVISITDGQIFLETDLFFKGIRPAVNVGLSVSRVGSS 378 Query: 371 LTTQEELQKMWILRKIIHPMGEIDA 395 + Q ++ + E+ A Sbjct: 379 AQIKAMKQVAGSIKLELAQYREMAA 403 >UniRef50_A8BYU1 Vacuolar ATP synthase catalytic subunit A n=3 Tax=Giardia intestinalis RepID=A8BYU1_GIALA Length = 655 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 51/313 (16%), Positives = 106/313 (33%), Gaps = 69/313 (22%) Query: 135 NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 194 + P+ + ++ + + R LD P+ G I GKT++ Q+I++ Sbjct: 212 HYHPVRSPKKVFKKLPCINPLITGQRTLDGLFPLAIGATAAIPGGFGCGKTVVSQSISKY 271 Query: 195 IAYNHPDCVLMVLLIDERPEE----VTEMQRLV-------------------------KG 225 + V++ + ER E +T+ + + Sbjct: 272 GNTD----VIVYIGCGERGNEMAEILTDFPEMTFEAKKRVIGPSGQQEIKTVVSDIFSRT 327 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-V 284 +VA+T + P + I ++ + +V +L DS +R A A + G Sbjct: 328 VLVANTSNMPVAAREASIYTGITISEFFRDQGYNVTLLADSTSRWAEALREISGRLGGIP 387 Query: 285 LTGGVDANALHRPKRFFGAARNV----------------------------------EEG 310 GG A+ + F+ A V + Sbjct: 388 GEGGYPADLTSKLSHFYERAGRVICLGNSNGAWSPENILDPTSGAISSTEQGLLQPGQRI 447 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEEL 370 GS+++I A+ + + + + LS+ +A+++ FP++D+ S +R E Sbjct: 448 GSVSVIG-AVSPAAGDLSDAVAVSTLAIVQVFWGLSKNLAKRKHFPSVDWLISYSRCTET 506 Query: 371 LTTQEELQKMWIL 383 L + + L Sbjct: 507 LAPWYNARDISFL 519 >UniRef50_Q9G8S6 ATP synthase F1 subunit alpha n=1 Tax=Naegleria gruberi RepID=Q9G8S6_NAEGR Length = 550 Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 62/367 (16%), Positives = 121/367 (32%), Gaps = 43/367 (11%) Query: 65 LRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKP 124 + + S+L D +Y + ++ + G + G++ P GE Y NE +FD+ Sbjct: 62 MINGQQSHLKSNDLVYRTYKDVKT---KAGYGVLGRVVSPL-GECY------NEEDFDEL 111 Query: 125 ENARNKILFENLTPLHANSRLRMERGNGSTEDL-TARVLDLASPIGRGQRGLIVAPPKAG 183 + I + + +ER L V+D P+G GQR LI+ G Sbjct: 112 SYLFDDISLIEDVSVEIPAPGIIEREPVRVPFLTGINVVDCLIPVGCGQRELIIGDQNTG 171 Query: 184 KTMLLQNIAQSIAYNHPDCV--------------------LMVLLIDERPEE-------V 216 KT L + + + + + + R E + Sbjct: 172 KTSLAISAVLNQRLVNNVIHKKWRALESEIKIDRHSNFITCIYVTVGTRRSEGARLKKIL 231 Query: 217 TEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT 276 +M L +V S D+ A+ + I++ D +++ A AY Sbjct: 232 DKMGALNYTSMVFSHADQAAALQFMAPYAGCAIGEWFRNKGYRAIVVYDDLSQHAVAYRQ 291 Query: 277 VVPASGKVLTG-GVDANALHRPKRFFGAARNVEE---GGSLTIIATALIDTGSKMDEVIY 332 + + + + R A + GSLT + + G + I Sbjct: 292 MSLLLKRPPGREAYPGDVFYVHSRLLERAAQLHRNKGAGSLTALP-VIETKGGDISAYIP 350 Query: 333 EEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE 392 + ++ LS ++A + V PA++ S +R ++ Sbjct: 351 TNVISITDGQIFLSSQLANQGVRPAVNVGLSVSRVGSSAQYTSVNGISKKIKADYSMFKT 410 Query: 393 IDAMEFL 399 +++E L Sbjct: 411 YESVEKL 417 >UniRef50_A9U7E2 Predicted protein (Fragment) n=3 Tax=cellular organisms RepID=A9U7E2_PHYPA Length = 438 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 85/134 (63%), Positives = 112/134 (83%), Gaps = 2/134 (1%) Query: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 L+GG+D A HRPKRFFG+ARN+EEGGSLTI+ATAL++TGS+MD+VIYEEFKGTGNMEL Sbjct: 1 TLSGGIDPAAFHRPKRFFGSARNIEEGGSLTILATALVETGSRMDDVIYEEFKGTGNMEL 60 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKL 403 HL RK+AE+R+FPAID RSGTR+EELL ++EEL K+W++RK ++ + ++ I KL Sbjct: 61 HLDRKLAERRIFPAIDIRRSGTRREELLLSKEELDKLWMIRKNMN--ETNEFVDSFIKKL 118 Query: 404 AMTKTNDDFFEMMK 417 A TKTND+F + ++ Sbjct: 119 ADTKTNDEFLQTLE 132 >UniRef50_P06576 ATP synthase subunit beta, mitochondrial n=4569 Tax=root RepID=ATPB_HUMAN Length = 529 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 120/330 (36%), Gaps = 21/330 (6%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 L G + P K L ++ V + + R I + P+HA + ME Sbjct: 118 GLVRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDE-RGPIKTKQFAPIHAEAPEFMEM 176 Query: 150 GNGSTEDL-TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 + +V+DL +P +G + + GKT+L+ + ++A H + Sbjct: 177 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAG 235 Query: 209 IDERPEEVTEMQ-------------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 + ER E ++ K +V +EP +VA + A+ + Sbjct: 236 VGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRD 295 Query: 256 H-KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSL 313 +DV++ +D+I R +A + V G++ + G + GS+ Sbjct: 296 QEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-KKGSI 354 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE-LLT 372 T + + + + + LSR IAE ++PA+D S +R + + Sbjct: 355 TSVQAIYVPA-DDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIV 413 Query: 373 TQEELQKMWILRKIIHPMGEIDAMEFLINK 402 E ++KI+ + + ++ Sbjct: 414 GSEHYDVARGVQKILQDYKSLQDIIAILGM 443 >UniRef50_Q8T4C4 ATP synthase subunit beta n=8 Tax=cellular organisms RepID=Q8T4C4_DROME Length = 622 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 62/340 (18%), Positives = 133/340 (39%), Gaps = 26/340 (7%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 LR G + P + L ++ V D ++ R ++ + + +H N + Sbjct: 162 GLRRGQPVLDTGYPIRVAVGKAVLGRILNVVGDPIDD-RGEVKSDFYSFIH-NEAPELTD 219 Query: 150 GNGSTEDL--TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207 + E L +V+DL +P +G + + GKT+L+ + +IA +H + V Sbjct: 220 LSVKPEILVTGIKVIDLLAPYVKGGKIGLFGGAGVGKTVLIMELINNIAKSHGGYSVFVG 279 Query: 208 LIDERPEEVTEMQ-RLVKGEVVASTFD------------EPASRHVQVAEMVIEKAKRLV 254 ER E ++ +++ +V++ D EP +V + A+ Sbjct: 280 A-GERTREGNDLYHEMIESKVISLEDDSSKVVLVFGQMNEPPGARSRVVLTGLTIAEYFR 338 Query: 255 E-HKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGS 312 + +DV++ +D+I R +A + V G++ + G + GS Sbjct: 339 DVDGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLGTDMGTMQERITSTRN-GS 397 Query: 313 LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR-KEELL 371 +T + + + + + LSR IAE ++PA+D S +R + + Sbjct: 398 ITSVQAVYVPA-DDLSDPAPAATFSHLDATTVLSRPIAELGIYPAVDPLDSSSRILDPDV 456 Query: 372 TTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 411 +E ++K + ++ +I L M + +++ Sbjct: 457 VGEEHYNVARAVQKTLQAYKS---LQDIIAILGMDELSEE 493 >UniRef50_Q9C5A9 ATP synthase subunit beta-3, mitochondrial n=930 Tax=cellular organisms RepID=ATPBO_ARATH Length = 559 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 122/315 (38%), Gaps = 23/315 (7%) Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRG 171 L ++ V + + R +I E+ P+H ++ ++ G +V+DL +P RG Sbjct: 169 LGRIMNVLGEPIDE-RGEIKTEHYLPIHRDAPALVDLATGQEILATGIKVVDLLAPYQRG 227 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV-------- 223 + + GKT+L+ + ++A H + + ER E ++ R + Sbjct: 228 GKIGLFGGAGVGKTVLIMELINNVAKAH-GGFSVFAGVGERTREGNDLYREMIESGVIKL 286 Query: 224 -------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYN 275 K +V +EP +V + A+ + +DV++ +D+I R +A + Sbjct: 287 GEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANS 346 Query: 276 TVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE 334 V G++ + G + GS+T + + + + Sbjct: 347 EVSALLGRIPSAVGYQPTLASDLGALQERITTT-KKGSITSVQAIYVPA-DDLTDPAPAT 404 Query: 335 FKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR-KEELLTTQEELQKMWILRKIIHPMGEI 393 + LSR+I+E ++PA+D S +R + +E ++K++ + Sbjct: 405 TFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNL 464 Query: 394 DAMEFLINKLAMTKT 408 + ++ +++ Sbjct: 465 QDIIAILGMDELSED 479 >UniRef50_Q98QB6 ATP synthase subunit beta 2 n=22 Tax=Mycoplasmataceae RepID=ATPB2_MYCPU Length = 468 Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 118/280 (42%), Gaps = 14/280 (5%) Query: 151 NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI--AYNHPDCVLMVLL 208 + + +++D PI +G + I GKT++++ + +I + D + + Sbjct: 118 DNEIINTGIKIIDFFVPIIKGSKIGIFGGAGVGKTIIIKELIFNISRQRDSNDVKVFFVG 177 Query: 209 IDERPEEVTEMQ-RLVKGEVVASTF------DEPASRHVQVAEMVIEKAKRLVE-HKKDV 260 ER E E+ LV ++ ST +EP+ +++ + I A+ + +KDV Sbjct: 178 TGERTREAKELYDELVNSSLIKSTSLFISQMNEPSGSRMKILPVGITAAEYARDSEQKDV 237 Query: 261 IILLDSITRLARAYNTVVPASG-KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATA 319 + +D+I R +A + + G K G A + N + GS+T T Sbjct: 238 LFFVDNIYRYLQAGRELSFSLGKKPSEAGYQATLVSDISSVQERLANSKH-GSITSFQTV 296 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRS-GTRKEELLTTQEELQ 378 + +++ + L LSR+I + +FPAID S + +E + + + Sbjct: 297 FLPM-DDLNDPASVAILNHLDSSLVLSREIFAEGLFPAIDPLLSNSSLLQEKIVGKRHIL 355 Query: 379 KMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 + ++KI+H +++ M ++ + N + ++ Sbjct: 356 LVKRVKKILHKYKQLEEMIMILGVQELEPNNRLIVKKAQQ 395 >UniRef50_Q4A6P2 ATP synthase alpha chain n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A6P2_MYCS5 Length = 514 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 58/314 (18%), Positives = 114/314 (36%), Gaps = 23/314 (7%) Query: 116 VNEVNFDKPENARNKIL----FENLTPLHANSRLRMERGNGSTEDLTARVL-DLASPIGR 170 ++ N P A+ + + +L+ N + + + LT V+ DL PIGR Sbjct: 88 IDIQNNIYPHKAKASLNKSKYYSSLSTPFNNPKELLNYQPLKKQLLTGYVVVDLLIPIGR 147 Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK------ 224 GQR LI+ K GKT L N I + + + I ++ ++T +L+K Sbjct: 148 GQRQLIIGDRKTGKTFLALNTI--INQKNQGVKCIYVAIGQQHAQLTSTYQLLKENGALD 205 Query: 225 -GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283 ++ + D P + + A+ + +DV+++ D +T A Y + + K Sbjct: 206 HTIIINAPADSPY-EQYLAPYVAMAHAE-NIAKDEDVLVIFDDLTTHANIYREIALLTNK 263 Query: 284 VLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 + + R + S+T + L + + +I + + Sbjct: 264 PVGKEAFPGDMFFAHSRLLERSGRFAGKKSITALP-ILQTVDNDISSLIASNIISITDGQ 322 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 L + I + PAID S +R + + + + KI + L Sbjct: 323 LVTNANIFQSGQLPAIDTELSVSRIGAAVQEKNMAKTSKEIGKIYKAYKRQAKLSSL--- 379 Query: 403 LAMTKTNDDFFEMM 416 ND+ ++ Sbjct: 380 --KYDLNDETNALI 391 >UniRef50_A3MAR7 ATP synthase subunit beta 2 n=63 Tax=Bacteria RepID=ATPB2_BURM7 Length = 534 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 125/323 (38%), Gaps = 14/323 (4%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 LR G + P + L ++ V ++ P+H + L E+ Sbjct: 96 GLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQ 155 Query: 150 GNGSTE-DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 + + +V+DL +P+ +G + + GKT+ + + ++ + + + Sbjct: 156 KSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVFVMELIHAMVERYRG-ISVFAG 214 Query: 209 IDERPEEVTEMQRLVKG-------EVVASTFDEPASRHVQVAEMVIEKAKRLV-EHKKDV 260 I ER E EM ++G +V +EP +V + A+ E ++V Sbjct: 215 IGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNV 274 Query: 261 IILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATA 319 ++L+D++ R +A V G++ + G +VE G ++T I Sbjct: 275 LLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVE-GAAVTAIEAV 333 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT-RKEELLTTQEELQ 378 + + + + LSR +A + ++PAID S + + L+ + ++ Sbjct: 334 YVPA-DDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVE 392 Query: 379 KMWILRKIIHPMGEIDAMEFLIN 401 +R++I E+ + L+ Sbjct: 393 VAIEVRRVIEHYRELQDVIALLG 415 >UniRef50_A5KSP4 Sodium-transporting two-sector ATPase n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSP4_9BACT Length = 495 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 105/284 (36%), Gaps = 15/284 (5%) Query: 123 KPENARNKILFENLTPLHANSRLRMERG-NGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 +P + + + ++ PL + MER +D PI GQR I+ K Sbjct: 120 RPLDDKGTVRLDDTRPLFYEAPSIMERTMLSEQLPSGVTAVDALFPIVLGQRIAILGDTK 179 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG--------EVVASTFD 233 AGK+ L + + +++ +LI +R E+ + + VVA+ FD Sbjct: 180 AGKSTFLGQLGVNQI--DTGRIVVYVLIGKRRVEIDRLVATLNQTGAIKHSIVVVANIFD 237 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVP-ASGKVLTGGVDAN 292 A ++ + A+ L +DVI++ D +T A+ Y + + + Sbjct: 238 SIAQSYI-APYVGCAIAEHLWYGGRDVIVVYDDLTSHAKVYREISLLSEANPGRDSYPGD 296 Query: 293 ALHRPKRFFGAARNVEEGG-SLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 + A + G +LT + AL+ G + + + ++ Sbjct: 297 MFYAHSSLLERAGKLASSGKTLTALP-ALVTPGDDITAYLPTSIMSITDGQIIFDLATFR 355 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDA 395 + + PA++ S +R + T+ + + L K + + Sbjct: 356 QNIRPAVNTGLSVSRVGGRVQTKRQKEIAGGLFKSLVAYRQAQE 399 >UniRef50_Q05825 ATP synthase subunit beta, mitochondrial n=3356 Tax=cellular organisms RepID=ATPB_DROME Length = 505 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 122/333 (36%), Gaps = 27/333 (8%) Query: 90 NLRTGDTI--SGK-IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSR-L 145 L G + +G IR P E L ++ V + + R I + +HA + Sbjct: 95 GLVRGQKVLDTGYPIRIPVGAE---TLGRIINVIGEPIDE-RGPIDTDKTAAIHAEAPEF 150 Query: 146 RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 205 +V+DL +P +G + + GKT+L+ + ++A H + Sbjct: 151 VQMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGYSV 209 Query: 206 VLLIDERPEEVTEMQ-------------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKR 252 + ER E ++ + K +V +EP +VA + A+ Sbjct: 210 FAGVGERTREGNDLYNEMIEGGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEY 269 Query: 253 LVEH-KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEG 310 + +DV++ +D+I R +A + V G++ + G + Sbjct: 270 FRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQERITTT-KK 328 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE- 369 GS+T + + + + + LSR IAE ++PA+D S +R + Sbjct: 329 GSITSVQAIYVPA-DDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDP 387 Query: 370 LLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 + QE ++KI+ + + ++ Sbjct: 388 NIIGQEHYNVARGVQKILQDYKSLQDIIAILGM 420 >UniRef50_Q15SF7 ATP synthase subunit beta 1 n=26 Tax=cellular organisms RepID=ATPB1_PSEA6 Length = 537 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 106/262 (40%), Gaps = 13/262 (4%) Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 + +++D+ P+ RG + + GKT+LL + ++ V + I ER E Sbjct: 142 ETGIKIVDVLCPLERGGKAGLFGGAGVGKTVLLSEMIHNMVSQQQG-VSIFCGIGERCRE 200 Query: 216 VTEMQRLVKG-------EVVASTFDEPASRHVQVAEMVIEKAKRLV-EHKKDVIILLDSI 267 E+ R +K ++ +EP ++ + A+ + KKDV++L+D+I Sbjct: 201 GEELYREMKEAGVLDNMVMLFGQMNEPPGSRFRIGHAALTMAEYFRDDEKKDVLLLIDNI 260 Query: 268 TRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSK 326 R +A + V G++ + G N E+ G++T I + Sbjct: 261 FRFIQAGSEVSGLMGQMPSRMGYQPTLGTELAGLEERIANTED-GAVTSIQAVYVPA-DD 318 Query: 327 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE-ELLTTQEELQKMWILRK 385 + + L LSRK A + +PA+D +S ++ + Q +++ Sbjct: 319 FTDPAAVHTFSHLSATLVLSRKRASEGFYPAVDPLQSSSKLATPTVVGQRHYDVARQVKQ 378 Query: 386 IIHPMGEIDAMEFLINKLAMTK 407 I+ E+ + ++ ++K Sbjct: 379 ILAQYNELKDIIAMLGLEQLSK 400 >UniRef50_O57728 Endonuclease PI-Pho2 n=1 Tax=Pyrococcus horikoshii RepID=VATA_PYRHO Length = 964 Score = 160 bits (405), Expect = 9e-38, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 92/245 (37%), Gaps = 30/245 (12%) Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVAS 230 T+ +A+ V++ + ER E+T++ + + ++A+ Sbjct: 617 TVTQHQLAKWSDAQ----VVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIAN 672 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGV 289 T + P + I A+ + DV ++ DS +R A A + ++ G Sbjct: 673 TSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGY 732 Query: 290 DANALHRPKRFFGAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 A + F+ A V GS+++I A+ G E + + + Sbjct: 733 PAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIG-AVSPPGGDFSEPVVQNTLRVVKVFW 791 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQEELQKMWI-LR-KIIHPMGEIDAMEFL 399 L +A +R FPAI++ S + + + + + W +R K + + + ++ + Sbjct: 792 ALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEI 851 Query: 400 INKLA 404 + + Sbjct: 852 VRIVG 856 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 19/63 (30%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 P ++ P+ + + RV+D P +G I P Sbjct: 178 KTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFG 237 Query: 182 AGK 184 +GK Sbjct: 238 SGK 240 >UniRef50_Q97CQ0 Tvo atpA intein n=3 Tax=Archaea RepID=VATA_THEVO Length = 776 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 92/246 (37%), Gaps = 30/246 (12%) Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVAS 230 T++ +A+ N +++ + ER E+TE+ + + ++A+ Sbjct: 422 TVIQHQLAKWSDAN----IVVYIGCGERGNEMTEILTTFPELKDPVSGQPLMDRTVLIAN 477 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGV 289 T + P + I A+ + DV ++ DS +R A A + ++ G Sbjct: 478 TSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGY 537 Query: 290 DANALHRPKRFFGAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 A R F+ + + GS+T+I A+ G + E + + + Sbjct: 538 PAYLGRRISEFYERSGRARLVSPEDRFGSITVIG-AVSPPGGDISEPVSQNTLRVTRVFW 596 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELL---TTQEELQKMWILR-KIIHPMGEIDAMEFL 399 L +A +R FP+I++ S + E L + + LR + + + ++ + Sbjct: 597 ALDASLANRRHFPSINWLNSYSLYTEDLRHWYDENVAKDWGSLRSQAMDILQRESELQEV 656 Query: 400 INKLAM 405 + Sbjct: 657 AQLVGY 662 Score = 44.5 bits (104), Expect = 0.007, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 6/91 (6%) Query: 95 DTISGKIRPPKEGERYFALLKVNEVN-FDKPENARNKILFENLTPLHANSRLRMERGNGS 153 D +SGKI+ EG+R V +V E+ + P+ R+ + Sbjct: 150 DGVSGKIKSIYEGKR-----TVEDVVCTISTEHGDVDVNLMTTWPVRKARRVVRKLPPEI 204 Query: 154 TEDLTARVLDLASPIGRGQRGLIVAPPKAGK 184 RV+D P+ +G + P +GK Sbjct: 205 PLVTGQRVIDALFPVAKGGTAAVPGPFGSGK 235 >UniRef50_Q9UXU7 Pab atpA intein n=9 Tax=cellular organisms RepID=VATA_PYRAB Length = 1017 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 41/245 (16%), Positives = 92/245 (37%), Gaps = 30/245 (12%) Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVAS 230 T+ +A+ V++ + ER E+T++ + + ++A+ Sbjct: 670 TVTQHQLAKWSDAQ----VVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIAN 725 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGV 289 T + P + I A+ + DV ++ DS +R A A + ++ G Sbjct: 726 TSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGY 785 Query: 290 DANALHRPKRFFGAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 A + F+ A V GS+++I A+ G E + + + Sbjct: 786 PAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIG-AVSPPGGDFSEPVVQNTLRVVKVFW 844 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQEELQKMWI-LR-KIIHPMGEIDAMEFL 399 L +A +R FPAI++ S + + + + + W +R K + + + ++ + Sbjct: 845 ALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDPEWKAMRDKAMELLQKESELQEI 904 Query: 400 INKLA 404 + + Sbjct: 905 VRIVG 909 Score = 46.4 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 2/88 (2%) Query: 97 ISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED 156 I G+I E Y + +V P ++ P+ + + Sbjct: 155 IEGEIVEIAEEGEYTIEEVIAKV--KTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLI 212 Query: 157 LTARVLDLASPIGRGQRGLIVAPPKAGK 184 RV+D P +G I P +GK Sbjct: 213 TGQRVIDTFFPQAKGGTAAIPGPFGSGK 240 >UniRef50_Q9TAH9 ATP synthase subunit alpha n=1 Tax=Cafeteria roenbergensis RepID=Q9TAH9_CAFRO Length = 601 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 60/362 (16%), Positives = 118/362 (32%), Gaps = 62/362 (17%) Query: 93 TGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN------ARNKILFENLTPLHANSRLR 146 G + G++ P V P++ +I+ P+ + Sbjct: 136 VGIGLLGRVIDPLGNVLDDPTRPVEL--NKSPKDDLFRNYYIGRIVTGYSRPVEIQAPGI 193 Query: 147 MERGNGSTEDLTA-RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH------ 199 + R + + LT +D PIG GQR LI+ + GKT + ++ + A+ + Sbjct: 194 IVRKSVNKPLLTGLNCVDSMVPIGLGQRELIIGDRQVGKTAVAIDMILNQAFLNETLRNS 253 Query: 200 ---------------PDCVLMVLLIDE-------------RPEEVTE----------MQR 221 C + + I + RP + E Sbjct: 254 LLSSEGAVVNKLLPSKPCYCIYVGIGQKQSTIARIAKLLKRPRTLFERNVSTKRSSVFSA 313 Query: 222 LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPAS 281 L +VAS + A + + + +I+ D +++ A AY + Sbjct: 314 LNYTIIVASISSDSAPIQFLAPYTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLL 373 Query: 282 GKVLTG-GVDANALHRPKRFFGAARNVE---EGGSLTIIATALIDT-GSKMDEVIYEEFK 336 + + + R A + GGSLT + +I+T + + I Sbjct: 374 RRPPGREAYPGDVFYLHSRLLERAAQMSDAVGGGSLTAL--PIIETMANDVSAYIPTNVI 431 Query: 337 GTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 + ++ L ++ + + PAI+ S +R + Q L+ + E+ M Sbjct: 432 SITDGQIFLETELFNQGIRPAINVGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREV--M 489 Query: 397 EF 398 EF Sbjct: 490 EF 491 >UniRef50_P46561 ATP synthase subunit beta, mitochondrial n=70 Tax=cellular organisms RepID=ATPB_CAEEL Length = 538 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 62/336 (18%), Positives = 127/336 (37%), Gaps = 31/336 (9%) Query: 93 TGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG 152 TGD I + P G ++ V + + R I +N +HA + +E Sbjct: 137 TGDPIKIPVGPETLG-------RIMNVIGEPIDE-RGPIASKNFAAIHAEAPEFVEMSVE 188 Query: 153 STEDL-TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 211 + +V+DL +P +G + + GKT+L+ + ++A H + + E Sbjct: 189 QEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGE 247 Query: 212 RPEEVTEMQ-------------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH-K 257 R E ++ + K +V +EP +V + A+ + Sbjct: 248 RTREGNDLYHEMIEGGVIDLKGKNSKVSLVYGQMNEPPGARARVCLTGLTVAEYFRDQEG 307 Query: 258 KDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTII 316 +DV++ +D+I R +A + V G++ + G + GS+T + Sbjct: 308 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQERITTT-KKGSITSV 366 Query: 317 ATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE-LLTTQE 375 + + + + LSR IAE ++PA+D S +R + + Q Sbjct: 367 QAIYVPA-DDLTDPAPATTFAHLDATTVLSRGIAELAIYPAVDPLDSTSRIMDPNVVGQN 425 Query: 376 ELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 411 ++KI+ ++ +I L M + +++ Sbjct: 426 HYDIARGVQKILQDYKS---LQDIIAILGMDELSEE 458 >UniRef50_Q2VZN2 ATP synthase subunit beta n=40 Tax=cellular organisms RepID=ATPB_MAGSA Length = 474 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 56/316 (17%), Positives = 128/316 (40%), Gaps = 24/316 (7%) Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDL-TARVLDLASPIGRG 171 L ++ V + + R I + P+HA++ +++ + + +V+DL +P +G Sbjct: 87 LGRIINVIGEPIDE-RGPIGNKTTLPIHADAPEFVDQSTETEILVTGIKVIDLLAPYCKG 145 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ-RLVKGEV--- 227 + + GKT+L+ + +IA H + + ER E ++ +++ V Sbjct: 146 GKIGLCGGAGVGKTVLIMELINNIAKAH-GGYSVFAGVGERTREGNDLYHEMIESGVIKL 204 Query: 228 ---------VASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYNTV 277 V +EP +VA + A+ + +DV+ +D+I R +A + V Sbjct: 205 DGPGSKVALVYGQMNEPPGARARVALSGLTVAEYFRDVEGQDVLFFVDNIFRFTQAGSEV 264 Query: 278 VPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFK 336 G++ + G + + GS+T + + + + Sbjct: 265 SALLGRIPSAVGYQPTLATDMGALQERITST-KKGSITSVQAIYVPA-DDLTDPAPATSF 322 Query: 337 GTGNMELHLSRKIAEKRVFPAIDYNRSGTR-KEELLTTQEELQKMWILRKIIHPMGEIDA 395 + L+R+IAE ++PA+D S +R + + + Q +++I+ Sbjct: 323 AHLDATTVLNRQIAELGIYPAVDPLDSTSRVLDPRVVGNDHYQTARDVQRILQTYKS--- 379 Query: 396 MEFLINKLAMTKTNDD 411 ++ +I L M + +++ Sbjct: 380 LQDIIAILGMDELSEE 395 >UniRef50_Q4A6P1 ATP synthase beta chain n=10 Tax=Mycoplasma RepID=Q4A6P1_MYCS5 Length = 470 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 55/299 (18%), Positives = 118/299 (39%), Gaps = 20/299 (6%) Query: 116 VNEVNFDK---PENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ 172 + +VN + PE ++ ++ ++ N+ + + +D P+ G Sbjct: 85 IFDVNGNSLTNPEAKLKRVEMDS--TIYPNNNF---TTKPQILETGIKAIDFFIPVLSGA 139 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK-------G 225 + + GKT+L++ + +++ + + ER E E+ +K Sbjct: 140 KIGLFGGAGVGKTVLMKEVIFTLSKKDKKTTSIFIGAGERSREAIELYDELKFSNLMKNS 199 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYNTVVPAS-GK 283 + S +E A + + + + A+ L + K++V++ +D+I R +A N + + K Sbjct: 200 IIFVSRMNELAGSRMSIVPIGVTAAEYLRDTQKENVLLFIDNIFRFLQAGNEMSASLDKK 259 Query: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 GG A E G++T T + + + N L Sbjct: 260 PSLGGYQATLNTDISYVENRIFTNEN-GTITSFQTVFLPM-DDLSDPSAVAIFKHLNGSL 317 Query: 344 HLSRKIAEKRVFPAIDYNRSGT-RKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLIN 401 LSR+I K +FPAID S + +E + +E + +KI+ E++ + ++ Sbjct: 318 VLSREITAKNIFPAIDPLASSSDSVDERIIGKEHYNAIVEAKKILQRYKELEDVILILG 376 >UniRef50_Q6L1S7 A1AO H+ ATPase subunit A n=1 Tax=Picrophilus torridus RepID=Q6L1S7_PICTO Length = 922 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 95/246 (38%), Gaps = 30/246 (12%) Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVAS 230 T++ +++ + +++ + ER E+TE+ + + ++A+ Sbjct: 570 TVIQHQLSKWSDSD----IVVYVGCGERGNEMTEILSTFPELMDPKTGKPIMQRTVLIAN 625 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGV 289 T + P + + A+ + +V ++ DS +R A A + ++ G Sbjct: 626 TSNMPVAAREASIYTGVTIAEYYRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGY 685 Query: 290 DANALHRPKRFFGAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 A R F+ + N + GS+T+I A+ G + + + + + Sbjct: 686 PAYLGRRISEFYERSGNAQIIAEDQRTGSVTLIG-AVSPPGGDLSDPVVQNTLRVTRVFW 744 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQEELQKMW--ILRKIIHPMGEIDAMEFL 399 L +A +R FP+I++ S + L E + W I + ++ + + ++ + Sbjct: 745 ALDASLASRRHFPSINWLTSYSLYTNNLSKWYTENVGPDWPEIYKTMMDLLEKESELQEI 804 Query: 400 INKLAM 405 + + Sbjct: 805 VQLVGY 810 Score = 47.6 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 8/90 (8%) Query: 97 ISGKIRPPKEGERYFA--LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGST 154 + G ++ K G+ + + + N D +I + + P+ R+ + Sbjct: 153 VEGTVKSIKSGKFKVSDTVAIIETKNGDY------EIKLKQIWPVREARRVFHKFPPEIP 206 Query: 155 EDLTARVLDLASPIGRGQRGLIVAPPKAGK 184 RV+D P+ +G + P +GK Sbjct: 207 LITGQRVIDAFFPVAKGGTVAVPGPFGSGK 236 >UniRef50_Q9BBC2 ATPase CF1 alpha subunit (Fragment) n=3 Tax=Dinophyceae RepID=Q9BBC2_AMPCA Length = 464 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 48/277 (17%), Positives = 91/277 (32%), Gaps = 15/277 (5%) Query: 141 ANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200 + + +D PIGRGQR LI+ + GKT + + ++ Y Sbjct: 107 PAPSIVSRQSVCEPLATGIVSIDAMIPIGRGQRELIIGDRQTGKTSICLDTIVNLKYEK- 165 Query: 201 DCVLMVLLIDERPEEVTE-MQRLVKGEV------VASTFDEPASRHVQVAEMVIEKAKRL 253 + + + + ++ V + Q+LVK +V V ++ A A+ Sbjct: 166 -VLSVYVPVGQKAASVLDAYQQLVKRDVYQALAIVMASASTSAVMQYLSVYAGTALAEFF 224 Query: 254 V-EHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV---E 308 + V I D + + A AY + + + + R + + Sbjct: 225 MYNLSLPVFIAYDDLAKQASAYREISLLLRRPPGREAFPGDIFYVHSRLLERSAKLNYAC 284 Query: 309 EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE 368 GS+T + I + +L LS + + + PAID S TR Sbjct: 285 GSGSITAFPIVET-LAQDVSAFIPTNLISITDGQLFLSTDLFNQGIKPAIDVGISVTRVG 343 Query: 369 ELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 + L+ + E++A + L Sbjct: 344 SAAQQDQMKMVAGRLKLTLAQFVELEAFSQFASDLGE 380 >UniRef50_D1J8A0 ATP synthase beta chain n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8A0_MYCHP Length = 452 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 57/292 (19%), Positives = 109/292 (37%), Gaps = 16/292 (5%) Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 +NKI + + N R +E N + + +D PI +G + + Sbjct: 89 GQPLLETKNKIEYVEMNSTINNER-YLEN-NKEIIETGIKAIDFFMPIVKGAKIGLFGGA 146 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFD 233 GKT+L++ I ++ H + + ER E E+ + + S + Sbjct: 147 GVGKTVLMKEIIFNLNKQHEANSNIFIGSGERSREGIELYNELSSSNLMKDSIMFISKMN 206 Query: 234 EPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYNTVVPASG-KVLTGGVDA 291 E + + I A+ L + ++V++ +D+I R +A N V A G K GG + Sbjct: 207 EAPGARTSIVPIGITAAEYLRDTCNENVLLFIDNIYRFIQAENEVSSALGKKPSIGGYQS 266 Query: 292 NALHRPKRFFGA-ARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA 350 RN + GS+T T + + + + L LSR A Sbjct: 267 TLESDVTEVESRLFRN--KKGSITSFQTIFLPM-DDLSDPSAVAVFNHLDGNLVLSRSQA 323 Query: 351 EKRVFPAIDYNRSGTR-KEELLTTQEELQKMWILRKIIHPMGEIDAMEFLIN 401 K +FPA D S T + + + ++I+ +++ + ++ Sbjct: 324 AKNIFPAFDPLASSTNAINPTIIGKRHYDAIIEAKRILKAYKDLEDVILILG 375 >UniRef50_Q874G5 Vacuolar membrane ATPase subunit a (Fragment) n=7 Tax=Saccharomycetaceae RepID=Q874G5_SACCA Length = 1101 Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 74/378 (19%), Positives = 141/378 (37%), Gaps = 59/378 (15%) Query: 60 DGFGFLRSADSSYLAGPDDIY--VSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVN 117 D G+++SAD+ + A IY VS IR L I + KE V+ Sbjct: 654 DSDGYVKSADNRFSATVTTIYKGVSEGLIR---LARSLGIRVSVSTEKEH--------VD 702 Query: 118 EVNFDKPENARNKILFENLTPLHANSRL-RMERGNGSTEDLTARVLDLASPIG-RGQRG- 174 + N R +F + L R ++R + ++ T + + + Q Sbjct: 703 KNNVKHKSCYR---VFLSGEALIGVLRFCALDRKRTAFKEFTREAVPFYFTLQEKDQDEY 759 Query: 175 -LIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------------- 219 I P + K LL ++A +V ER E+ E+ Sbjct: 760 YGITLPDETDKQYLLSSLA------------LVHNCGERGNEMAEVLMEFPELFTEKDGR 807 Query: 220 --QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTV 277 + + +VA+T + P + I A+ + KDV ++ DS +R A A + Sbjct: 808 KEPIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDQGKDVSMIADSSSRWAEALREI 867 Query: 278 VPASGKVLT-GGVDANALHRPKRFFGAARN------VEEGGSLTIIATALIDTGSKMDEV 330 G++ G A + F+ A + GS++I+A A+ G + Sbjct: 868 SGRLGEMPADQGFPAYLGAKLASFYERAGKAVALGSPDRIGSVSIVA-AVSPAGGDFSDP 926 Query: 331 IYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMW--ILR-KII 387 + G + L +K+A+++ FP+I+ + S ++ L + +LR +I Sbjct: 927 VTTATLGITQVFWGLDKKLAQRKHFPSINTSVSYSKYTNALNKYYDSNYAEFPVLRDRIK 986 Query: 388 HPMGEIDAMEFLINKLAM 405 + + +E ++ + Sbjct: 987 EILSNAEELEQVVQLVGK 1004 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 4/82 (4%) Query: 135 NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 194 + P+ + + RVLD P +G I GKT++ Q++++ Sbjct: 196 HTWPVRVPRPVAEKLSADYPLLTGQRVLDALFPCVQGGTTCIPGAFGCGKTVISQSLSK- 254 Query: 195 IAYNHPDCVLMVLLIDERPEEV 216 Y++ D ++ V + EV Sbjct: 255 --YSNSDSIIYVGCFA-KGTEV 273 >UniRef50_A5IY82 ATP synthase alpha chain n=23 Tax=Mycoplasmataceae RepID=A5IY82_MYCAP Length = 524 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 97/259 (37%), Gaps = 11/259 (4%) Query: 158 TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVT 217 +DL PIG+GQR LI+ + GKT + N + A C+ + I ++ E ++ Sbjct: 147 GINAIDLLIPIGKGQRELIIGDRQTGKTHIALNAIINQAAKGTKCIYVA--IGQKRESIS 204 Query: 218 EMQRLV------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLA 271 + + K ++ A + + A+ + D +++ D +T+ A Sbjct: 205 RIYNTLNQHNALKNTIIIDAPANSAYEQYLAPYVGMAHAENISAT-DDALVIFDDLTKHA 263 Query: 272 RAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEV 330 + + S K + + + + A + + ++T + + + Sbjct: 264 NIFREIALLSNKPVGKEAMPGDMFFAHSQLLERAGSYKGKKTITALPIIQT-VDGDITSL 322 Query: 331 IYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390 I + ++ S K+ K + PAID + S +R + + + ++ KI Sbjct: 323 IASNVISITDGQIVTSAKLFAKGILPAIDIDFSVSRTGSSVQDRTIAKVAGVINKIYRKY 382 Query: 391 GEIDAMEFLINKLAMTKTN 409 + L +L +N Sbjct: 383 KRHLKLSMLDYELNKEVSN 401 >UniRef50_Q0QEM9 ATP synthase subunit beta (Fragment) n=28 Tax=cellular organisms RepID=Q0QEM9_BOVIN Length = 322 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 50/270 (18%), Positives = 104/270 (38%), Gaps = 22/270 (8%) Query: 158 TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVT 217 +V+DL +P +G + + GKT+L+ + ++A H + + ER E Sbjct: 7 GIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGN 65 Query: 218 EMQ-------------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH-KKDVIIL 263 ++ K +V +EP +VA + A+ + +DV++ Sbjct: 66 DLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLF 125 Query: 264 LDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALID 322 +D+I R +A + V G++ + G + GS+T + + Sbjct: 126 IDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT-KKGSITSVQAIYVP 184 Query: 323 TGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE-LLTTQEELQKMW 381 + + + LSR IAE ++PA+D S +R + + E Sbjct: 185 A-DDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVAR 243 Query: 382 ILRKIIHPMGEIDAMEFLINKLAMTKTNDD 411 ++KI+ ++ +I L M + +++ Sbjct: 244 GVQKILQDYKS---LQDIIAILGMDELSEE 270 >UniRef50_D2V5T0 Mitochondrial F-1-ATPase subunit n=1 Tax=Naegleria gruberi RepID=D2V5T0_NAEGR Length = 601 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 64/342 (18%), Positives = 131/342 (38%), Gaps = 30/342 (8%) Query: 90 NLRTGDTIS---GKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLR 146 L G + G I P E L +V V + + R + +N +H ++ + Sbjct: 175 GLFRGKELVDTGGPITVPVGRE---TLGRVLNVLGEPIDE-RGPVNAKNRYSIHRDAPVL 230 Query: 147 MERGNGSTEDL-TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 205 E+ + +++D+ P +G + + GKT+++ + +IA H + Sbjct: 231 SEQTTQDEILVTGIKIIDVLIPYPKGGKIGLFGGAGVGKTVVIMELINNIAKKHGGFSVF 290 Query: 206 VLLIDERPEEVTEM-------------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKR 252 + ER E T++ K +V +EP +V + + A+ Sbjct: 291 GGVG-ERTREGTDLLLEMIQSRVIVVDGEGSKASLVYGQMNEPPGARARVGQTALSIAEY 349 Query: 253 LV-EHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEG 310 E +DV++ +D+I R +A + V G++ + G N + + Sbjct: 350 FRDEEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPNLSTDIGELQERITST-KK 408 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRK-EE 369 GS+T + + + + + LSR+IAE+ ++PA+D S +R Sbjct: 409 GSITSVQAIYVPA-DDITDPSPATTFAHLDATTVLSRQIAEQGMYPAVDALESMSRLINP 467 Query: 370 LLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 411 + +RK + E ++ +I L M + +D+ Sbjct: 468 SAIGKYHYDTADGVRKCLQ---EYQNLQDIIAILGMDELSDE 506 >UniRef50_C4N426 ATP synthase F1 alpha subunit n=1 Tax=uncultured bacterium pSY1435 RepID=C4N426_9BACT Length = 507 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 63/293 (21%), Positives = 101/293 (34%), Gaps = 34/293 (11%) Query: 92 RTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN 151 R G + P G L +P + + + + ++R Sbjct: 89 RAGHVLHVPAGPGLLGRVVDPL--------GRPLDRKGNVATRRTIRIERPPVPLIDRDV 140 Query: 152 GS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 210 S LD PIGRGQR L++ GKT L + +A P + + + I Sbjct: 141 VSRPLRTGIFTLDTMIPIGRGQRQLLLGDRSTGKTELGIEL---LAALDPTTIGVYVAIG 197 Query: 211 ERPEEVTEMQRLVK-------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 R E ++ G V S D+P A+ LVE DV+++ Sbjct: 198 RRGSETASTLAQLRARGVLEHGFAVVSDADDPVGLVHLTPYAASAMAESLVEAGHDVVVV 257 Query: 264 LDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEE---------GGSLT 314 D +T A A+ ++ + + H F+ AR +E+ GGSLT Sbjct: 258 YDDLTNHAHAHRSLALLLDRPVGRE-----AHPVDVFYAHARLLEQGAQLCARRGGGSLT 312 Query: 315 IIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRK 367 I G + I + ++ L +A PAID + S +R Sbjct: 313 AIPIIETQAG-DLAGYIPTNLVSITDGQIRLDAALAAAGQHPAIDVSLSVSRV 364 >UniRef50_A5EBX1 ATP synthase subunit beta 2 n=3 Tax=cellular organisms RepID=ATPB2_BRASB Length = 476 Score = 153 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 55/301 (18%), Positives = 121/301 (40%), Gaps = 16/301 (5%) Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDL--TARVLDLASPIGR 170 L ++ + P+HA++ + R S E +V+DL +P+ + Sbjct: 94 LGRLLNAVGKPADRGPELPPSTVFRPIHASAP-ALNRLGASQEIFHTGIKVIDLLAPLVK 152 Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE----VTEMQR---LV 223 G + + GKT+L+ + ++ + + + I ER E + E+++ L Sbjct: 153 GGKAAMFGGAGVGKTVLIMELIRTTVERYSG-ISVFAGIGERSREGHELLLELKQSGVLP 211 Query: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYNTVVPASG 282 + +V +EP + + A+ + ++V++L+D++ RL +A V G Sbjct: 212 RTALVFGQMNEPPGARWRAGLTALTIAEHFRDVQHENVLLLIDNVYRLVQAGGEVSGLLG 271 Query: 283 KVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNM 341 ++ + G +V G ++T I + D + E F + Sbjct: 272 RLPSRVGYQPTLASEIAELQERIASVA-GAAITSIQAVYVPADDFTDPAVAEIF-SHLDS 329 Query: 342 ELHLSRKIAEKRVFPAIDYNRSGT-RKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLI 400 + LSR++A + ++PA+D S + + L + + +RK I ++ + L+ Sbjct: 330 SIVLSRQMASEAMYPAVDPLASSSTLLDARLVGEGHYRTAQEVRKTIAHYRDLQEIIALL 389 Query: 401 N 401 Sbjct: 390 G 390 >UniRef50_P17255 Endonuclease PI-SceI n=18 Tax=cellular organisms RepID=VATA_YEAST Length = 1071 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 27/228 (11%) Query: 204 LMVLLIDERPEEV-----------TEMQR-----LVKGEVVASTFDEPASRHVQVAEMVI 247 ++V ER E+ TEM + + +VA+T + P + I Sbjct: 733 VVVHNCGERGNEMAEVLMEFPELYTEMSGTKEPIMKRTTLVANTSNMPVAAREASIYTGI 792 Query: 248 EKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARN 306 A+ + K+V ++ DS +R A A + G++ G A + F+ A Sbjct: 793 TLAEYFRDQGKNVSMIADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGK 852 Query: 307 ------VEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 + GS++I+A A+ G + + G + L +K+A+++ FP+I+ Sbjct: 853 AVALGSPDRTGSVSIVA-AVSPAGGDFSDPVTTATLGITQVFWGLDKKLAQRKHFPSINT 911 Query: 361 NRSGTRKEELL--TTQEELQKMWILR-KIIHPMGEIDAMEFLINKLAM 405 + S ++ +L + +LR ++ + + +E ++ + Sbjct: 912 SVSYSKYTNVLNKFYDSNYPEFPVLRDRMKEILSNAEELEQVVQLVGK 959 Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Query: 135 NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 194 + P+ + + RVLD P +G I GKT++ Q++++ Sbjct: 214 HTWPVRVPRPVTEKLSADYPLLTGQRVLDALFPCVQGGTTCIPGAFGCGKTVISQSLSK- 272 Query: 195 IAYNHPDCVLMVLL 208 Y++ D ++ V Sbjct: 273 --YSNSDAIIYVGC 284 >UniRef50_A3LP04 Vacuolar H+-ATPase V1 sector, subunit A n=8 Tax=Saccharomycetaceae RepID=A3LP04_PICST Length = 1065 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 27/223 (12%) Query: 209 IDERPEEVTEM----------------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKR 252 ER E+ E+ + + +VA+T + P + I A+ Sbjct: 732 CGERGNEMAEVLMEFPELFTEINGRKEPIMKRTTLVANTSNMPVAAREASIYTGITLAEY 791 Query: 253 LVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARN----- 306 + K+V ++ DS +R A A + G++ G A + F+ A Sbjct: 792 FRDQGKNVSMIADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGKSVALG 851 Query: 307 -VEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT 365 E GS++I+A A+ G + + G + L +K+A+++ FP+I+ + S + Sbjct: 852 SPERLGSVSIVA-AVSPAGGDFSDPVTTSTLGITQVFWGLDKKLAQRKHFPSINTSVSYS 910 Query: 366 RKEELL--TTQEELQKMWILRKIIHP-MGEIDAMEFLINKLAM 405 + +L + LR I + + + +E ++ + Sbjct: 911 KYTNVLDKYYDANYPEFPALRNKIKEILSDAEELEQVVQLVGK 953 Score = 54.1 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 68/197 (34%), Gaps = 47/197 (23%) Query: 50 FGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS-----PSQIRRFN-------LRTGDTI 97 G G++E + DG ++ + IY+ P+ R N L+ GD I Sbjct: 96 LGPGLMETIYDG---IQRPLKAIKEQSQSIYIPRGIDAPALSRTVNYDFTPGSLKVGDHI 152 Query: 98 SG-----------------KIRPPKEGERYFALLKVNEVNFDKPENARNKILFE------ 134 +G + PP+ + + E ++ ++ F+ Sbjct: 153 TGGDIFGSIYENSLLDDHKILLPPRARG---TITSIAEAGSYNVDDNVLEVEFDGKKHSY 209 Query: 135 ---NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNI 191 + P+ + + RVLD P +G I GKT++ Q++ Sbjct: 210 SMMHTWPVRVPRPVAEKLAADYPLLTGQRVLDSLFPCVQGGTTCIPGAFGCGKTVISQSL 269 Query: 192 AQSIAYNHPDCVLMVLL 208 ++ +++ D ++ V Sbjct: 270 SK---FSNSDVIIYVGC 283 >UniRef50_A1ZPD5 ATP synthase F1, beta subunit n=2 Tax=Bacteroidetes RepID=A1ZPD5_9SPHI Length = 505 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 56/354 (15%), Positives = 116/354 (32%), Gaps = 59/354 (16%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 ++ TGD I G++ ++ + ++ P +L E Sbjct: 81 SMPTGDGIKGRLFNVVG----------EAIDGIENPKTDRRVSIHRAAPTF--DQLTTET 128 Query: 150 GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI 209 +V+DL P +G + + GKT+L+Q + +IA + V + + Sbjct: 129 ---EVLFTGIKVIDLLEPYAKGGKIGLFGGAGVGKTVLIQELINNIAKAYAG-VSVFAGV 184 Query: 210 DERPEE----VTEMQRL------------------------------VKGEVVASTFDEP 235 ER E + EM K V +EP Sbjct: 185 GERTREGNDLLREMIESGIVNYGEEFEKALHEGGWPLDKIDREKLKESKATFVFGQMNEP 244 Query: 236 ASRHVQVAEMVIEKAKRLVE-----HKKDVIILLDSITRLARAYNTVVPASGKVLTG-GV 289 +VA + A+ + D++ +D+I R +A + V G++ + G Sbjct: 245 PGARARVALSGLSIAEYFRDGDGTGKGNDILFFIDNIFRFTQAGSEVSALLGRMPSAVGY 304 Query: 290 DANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 349 + + GS+T + + + + + LSRK+ Sbjct: 305 QPTLATEMGVMQERITSTKR-GSITSVQAIYVPA-DDLTDPAPATTFAHLDATTVLSRKL 362 Query: 350 AEKRVFPAIDYNRSGTR-KEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 A ++PA+D S +R + +E +++ + E+ + ++ Sbjct: 363 ASLGIYPAVDPLDSTSRILTADILGEEHYNIAQRVKETLQRYNELQDIIAILGL 416 >UniRef50_Q9MTQ2 ATP synthase subunit beta n=2 Tax=Amphidinium RepID=Q9MTQ2_AMPOP Length = 548 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 47/305 (15%), Positives = 114/305 (37%), Gaps = 36/305 (11%) Query: 133 FENLTPLHANSRLRMERGNGSTE-DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNI 191 F N P+H + ++ + + +V+D+ +P +G + + GKT+L+ + Sbjct: 185 FANAAPIHKDQVGVLDIDITAPLFETGIKVVDVLTPYKKGGKVGLFGGAGVGKTVLIMEL 244 Query: 192 AQSIAYNHPDCVLMVLLIDERPEEVTE---------------------MQRLVKGEVVAS 230 +++AY+H L I ER E + K +V Sbjct: 245 IRNLAYSHNGLSLFSG-IGERSREANDLYVEMQESGIILLAEDSSNPYFSAESKVALVFG 303 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYNTVVPASGKVLTGGV 289 ++ +VA + A+ + + +D+++ +D+I R +A + + G++ Sbjct: 304 QMNDTPGARFRVANAALTMAEYFRDVNGQDLLVFMDNIFRFVQAGSELSTLLGRM----- 358 Query: 290 DANALHRPKRFFGAARNVEEG-----GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELH 344 + ++P E GS+T I + + + + Sbjct: 359 PSAVGYQPTLATEMGTLQERIVPTLFGSITSIQAVYVPA-DDITDPAPVAIFTHLDAITV 417 Query: 345 LSRKIAEKRVFPAIDYNRSGTR-KEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKL 403 LSR +A K ++PA+D S ++ + + + ++ E+ + ++ Sbjct: 418 LSRGLAAKGIYPAVDPLASTSKALTASFVGERHYNVAQSIIQCLNRYKELQDLIAILGLD 477 Query: 404 AMTKT 408 ++++ Sbjct: 478 ELSES 482 >UniRef50_C5DTL5 ZYRO0C09504p n=2 Tax=Saccharomycetaceae RepID=C5DTL5_ZYGRO Length = 1067 Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 91/228 (39%), Gaps = 27/228 (11%) Query: 204 LMVLLIDERPEEVTEM----------------QRLVKGEVVASTFDEPASRHVQVAEMVI 247 L+V ER E+ E+ + + +VA+T + P + I Sbjct: 729 LVVHNCGERGNEMAEVLMEFPELFTEVNGHKEPIMKRTTLVANTSNMPVAAREASIYTGI 788 Query: 248 EKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARN 306 A+ + K++ ++ DS +R A A + G++ G A + F+ A Sbjct: 789 TLAEYFRDQGKNISMIADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGK 848 Query: 307 ------VEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 + GS++I+A A+ G + + G + L +K+A+++ FP+I+ Sbjct: 849 AVALGSPDRTGSVSIVA-AVSPAGGDFSDPVTTATLGITQVFWGLDKKLAQRKHFPSINT 907 Query: 361 NRSGTRKEELL--TTQEELQKMWILRKIIHP-MGEIDAMEFLINKLAM 405 + S ++ +L + Q+ LR I + + +E ++ + Sbjct: 908 SVSYSKYTNVLGKYYDQNHQEFPALRDHIKEILSNAEELEQVVQLVGK 955 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 73/215 (33%), Gaps = 48/215 (22%) Query: 50 FGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS-----PSQIR--RFNL-----RTGDTI 97 G G++E + DG ++ S + IY+ P+ R +++ R GD + Sbjct: 97 LGPGLMETIYDG---IQRPLKSIKDKSESIYIPRGVNAPALSRDAKWHFVPSDHRVGDHL 153 Query: 98 SG-----------------KIRPPKEGERYFALLKVNEVNFDKPENARNKILFE------ 134 +G + PP+ + + E ++ F+ Sbjct: 154 AGGDIFGTVFENNLIESHKIMLPPRARG---TITWIATEGEYTIEEKVIEVEFDGQKNGY 210 Query: 135 ---NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNI 191 + P+ + + RVLD P +G I GKT++ Q++ Sbjct: 211 SMFHTWPVRVPRPVAEKLSADVPLLTGQRVLDALFPCVQGGTTCIPGAFGCGKTVISQSL 270 Query: 192 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE 226 ++ +++ D ++ V + EV +K Sbjct: 271 SK---FSNSDAIVYVGCFA-KGTEVMMSDGSIKEV 301 >UniRef50_B0FLD3 Transcription termination factor Rho (Fragment) n=1 Tax=Flammeovirga yaeyamensis RepID=B0FLD3_9SPHI Length = 159 Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats. Identities = 61/97 (62%), Positives = 74/97 (76%) Query: 47 EDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKE 106 I +GVLEI+ DGFGFLRS+D +YLAGPDDIYVSPSQI+ F L+TGDT+ G IRPPK+ Sbjct: 63 GVIDSEGVLEIMSDGFGFLRSSDYNYLAGPDDIYVSPSQIKLFGLKTGDTVKGSIRPPKD 122 Query: 107 GERYFALLKVNEVNFDKPENARNKILFENLTPLHANS 143 GE+YFALLKV+ VN E +++I FE LTPL Sbjct: 123 GEKYFALLKVDTVNGKTTEEIKDRIPFEYLTPLFPQD 159 >UniRef50_Q600H8 ATP synthase alpha chain n=4 Tax=Mycoplasma RepID=Q600H8_MYCH2 Length = 512 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 54/292 (18%), Positives = 105/292 (35%), Gaps = 21/292 (7%) Query: 110 YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDL-TARVLDLASPI 168 YF + N +P AR + + + R + +DL +PI Sbjct: 79 YFGKIIDLSGNIIEPRAARPTTFLQYRHSAFETAAGVLRRELIDRQIYTGIYAIDLFNPI 138 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD---CVLMVLLIDE-RPEEVTEMQRLVK 224 G GQR LIV + GKT +I + N D + + I + R V+ LV+ Sbjct: 139 GFGQRELIVGDRQTGKT----HIGINTIINQKDSRTTKCIYVSIGQKRQNLVSLYHDLVQ 194 Query: 225 GEVVASTF-----DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVP 279 E +A+T + A+ L + DV+I+ D +T+ A + V Sbjct: 195 NEAMANTIVLHAPSTSPFDQYLAPYFAMAHAENL-SYNYDVLIVFDDLTKHASVWREVAL 253 Query: 280 ASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGT 338 + + + A+ + + S+T + L + + ++ Sbjct: 254 LTNQPIGKEAFPADIFFAHSKLLERSGKFIGRKSITALP-ILQTVDNDITALVSSNVISI 312 Query: 339 GNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390 + ++ S + + PAI+ S +R + + Q + ++ K I + Sbjct: 313 TDGQIITSSALFAQGKIPAINIGLSVSRTGSSV----QAQNIRLISKEISSL 360 >UniRef50_C6G421 ATP synthase subunit alpha n=2 Tax=Heterocapsa triquetra RepID=C6G421_HETTR Length = 479 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 84/254 (33%), Gaps = 20/254 (7%) Query: 129 NKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTML 187 ++I + + + + ++R + +D PIGRGQR L++ + GKT + Sbjct: 111 DRIDAQYRWVIESPAPGIIDRQSVFEPLQTGILSVDAMVPIGRGQRELVIGDRQTGKTSI 170 Query: 188 LQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHV 240 + + Y + L I ++ V E+ + ++ + A Sbjct: 171 GVDTILNQKYEK--VFCVYLPIGQKASSVLEVYLALVRRDSVFYLSMIVAAATSSAVCQY 228 Query: 241 QVAEMVIEKAKRL---VEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHR 296 A + E +++D ++R A AY + + G Sbjct: 229 LAAYSGAAICEFFMLVREL--PAFLMIDDLSRHAVAYREIYLLLRRPPGREGYPGEIFFV 286 Query: 297 PKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKR 353 R + + GGS T + + I + ++ LS + Sbjct: 287 HSRLLERSAKLSTNLGGGSTTCFP-VIETLAGDVSAYISTNVISITDGQIFLSTDLFLSG 345 Query: 354 VFPAIDYNRSGTRK 367 + PAID S TR Sbjct: 346 IKPAIDVGLSVTRV 359 >UniRef50_C6HLF6 ATP synthase subunit alpha n=1 Tax=Ajellomyces capsulatus H143 RepID=C6HLF6_AJECH Length = 522 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 98/315 (31%), Gaps = 45/315 (14%) Query: 92 RTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN 151 RTG+ + + P G AL N ++ P A+ K + L A L R Sbjct: 135 RTGEIVDVPVGPELLGRVIDALG--NPIDGKGPIKAKEKRRAQ----LKAPGILP-RRSV 187 Query: 152 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 211 V L PIGRGQ + + + + Sbjct: 188 NQPVQTGLSVSTLWVPIGRGQ--------------------------QQKLYCVYVAVGQ 221 Query: 212 RPEEVT-------EMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILL 264 + V E + VVA+T E A + ++ + +I Sbjct: 222 KRSTVAQLVKTLEENDAMKYSIVVAATASEAAPLQYIAPFTGCAVGEWFRDNGRHALITY 281 Query: 265 DSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV---EEGGSLTIIATAL 320 D +++ A AY + + + + R A + +GGSLT + Sbjct: 282 DDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDNHKGGSLTALPIIE 341 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 G + I + ++ L ++ K + PAI+ S +R + Q Sbjct: 342 TQ-GGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVGSAAQLKAMKQVA 400 Query: 381 WILRKIIHPMGEIDA 395 L+ + E+ A Sbjct: 401 GSLKLFLAQYREVAA 415 >UniRef50_Q6KHZ3 ATP synthase alpha chain n=1 Tax=Mycoplasma mobile RepID=Q6KHZ3_MYCMO Length = 516 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 93/255 (36%), Gaps = 16/255 (6%) Query: 148 ERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207 + +D+ P+G+GQR LI+ + GKT + N S + V + Sbjct: 120 RKSLNEPVQTGIASIDMLIPLGKGQRELIIGDRRTGKTSVALNTIISQKNTNTKAVYVA- 178 Query: 208 LIDERP-------EEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260 I +R + E ++K ++ E + + A+ + ++ DV Sbjct: 179 -IGQRKTNINFIYNTLEEFD-VLKNTIILEASSENLYHQFFALYVGMTHAENIAKNGDDV 236 Query: 261 IILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV--EEGGSLTIIA 317 II++D +++ A Y + K + + A E G++T + Sbjct: 237 IIVIDDLSKHANIYREMALLINKPAGREAFPGDIFFTHSKVLERAGKFKNENWGTITAL- 295 Query: 318 TALIDT-GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEE 376 +++T + +I + ++ +S ++A FPAID S +R + + Sbjct: 296 -PIVETIEGDITSLISSNIISITDGQIIMSSELAASGKFPAIDIELSVSRTGSKVQNKVL 354 Query: 377 LQKMWILRKIIHPMG 391 + + K Sbjct: 355 SKYSKKISKTFSLYK 369 >UniRef50_D1J8A1 ATP synthase alpha chain n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8A1_MYCHP Length = 512 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 107/293 (36%), Gaps = 20/293 (6%) Query: 113 LLKVNEVNFDK--PENARNKILFENLT---PLHANSRLRMERGN-GSTEDLTARVLDLAS 166 L K+ ++N P + + + L+ P+ + M +DL Sbjct: 85 LGKIIDINGGIIWPTDEKKRPNNSMLSNHHPIFGLAHNLMTVKTLNEQLYTGIIAIDLLI 144 Query: 167 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK-- 224 PIG+GQR LI+ + GKT + N + A N C+ + I ++ E +T + +K Sbjct: 145 PIGKGQRELIIGDRQTGKTHMALNAIINQAKNGTKCIYVA--IGQKRESLTNIYETLKKY 202 Query: 225 -----GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVP 279 ++ + + + + A+ L + DV+I+ D +T+ A + Sbjct: 203 DALKNTMIIDAP--QNVYEQYLAPYIGMAHAENL-SYDNDVLIVFDDLTKHANIIREIAL 259 Query: 280 ASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGT 338 + K + + ++ A + ++T + L + +I Sbjct: 260 LTNKSVGKEAMPSDIFFAHSSLLERAGSFVNRKTITALP-ILQTVDGDITSLISSNIISI 318 Query: 339 GNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMG 391 + ++ S + PAI+ + S +R + ++ + + KI Sbjct: 319 TDGQIVTSSDLFASGKLPAINIDLSVSRTGSSVQSRMMTKIAGEINKIFRSYK 371 >UniRef50_Q98QX4 ATP SYNTHASE BETA CHAIN n=1 Tax=Mycoplasma pulmonis RepID=Q98QX4_MYCPU Length = 698 Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats. Identities = 58/297 (19%), Positives = 113/297 (38%), Gaps = 26/297 (8%) Query: 129 NKILFENLTPLHANSRLRM-ERGNGSTE-----------DLTARVLDLASPIGRGQRGLI 176 +IL + PL M E + TE + +V+D+ PI G + + Sbjct: 303 GRILDDPTHPLVGKQYAPMIETESKQTEKYKVFPKTQILETGIKVIDVLLPIPSGGKTGL 362 Query: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE-------VTEMQRLVKGEVVA 229 + GKT+++Q + + H D V + I ER E E+ L K + Sbjct: 363 LGGAGVGKTVVVQELI-NTFIKHHDGVSVFSGIGERIREGHELWEEAKELGFLDKTTFIF 421 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYNTVVPASGKVLTG- 287 +E ++ ++ A+ K+V++ +D+I R +A + V K + Sbjct: 422 GQMNESPGLRLRSGFTGVKVAEYFRNNLGKNVLLFMDNIFRYMQAGSEVSSLLEKTPSAV 481 Query: 288 GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSR 347 G + + N G +T I I + + + LSR Sbjct: 482 GYQPMLVSEIGKLQER-INSNNDGDITSIQAMYIPA-DDFTDPAAVAAFAHFDATIILSR 539 Query: 348 KIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 ++A + ++PA+D S ++ T + + I ++ I + + ++E +IN L Sbjct: 540 QLAAEGLYPAVDPLVSSSKLLSTKFTST--RHINIAKETIAILEKSKSLEDIINILG 594 >UniRef50_Q74MS5 NEQ263 n=1 Tax=Nanoarchaeum equitans RepID=Q74MS5_NANEQ Length = 416 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 56/337 (16%), Positives = 128/337 (37%), Gaps = 22/337 (6%) Query: 95 DTISGKIRP-PKEGERYFALLKVNEVNF-----DKPENARNKILFENLTPLHANSRLRME 148 D +G+I+ ++G Y + + + +P E+ ++ + Sbjct: 45 DYYTGEIKQINRQGNTYKIAVSEDYIGGIFNGFGEPIKGPKPYP-EDYRDINGLAINPYA 103 Query: 149 RG-NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207 R +D+A P+ +GQ+ I +PP L IA+++A D ++ Sbjct: 104 RKVPNEILYTGISSIDVAHPLLKGQKIAIFSPPGLPMERLALQIARNVA---KDKTIIFA 160 Query: 208 LID-------ERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV-EHKKD 259 I +E + ++ + S D + + + A+ L E +D Sbjct: 161 AIGVPSDIYKMFIDEFINTKAIMNSAIFISKADSSPIEKIYTPRVALTLAEYLAFEKNRD 220 Query: 260 VIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIAT 318 V++L+ +T A A + ++ + G A + + GS+T+I Sbjct: 221 VLVLMLDMTNYADALREISTLRKEIPSRRGYPAYLYTDLASIYERSGLT-SKGSITLIP- 278 Query: 319 ALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQ 378 L G+ + V+ + + LS+ + K ++P ID +S +R + +++ + Sbjct: 279 MLTMPGNDITHVVPDLTGYITEGQYVLSQDLHSKNIYPPIDLLKSLSRLAKNGMSKKHKK 338 Query: 379 KMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEM 415 IL K E + ++ + +++K + + + Sbjct: 339 YADILIKSYAKGLEARDIATIVGEDSLSKEDKAYLKF 375 >UniRef50_Q98PM2 ATP SYNTHASE ALPHA CHAIN n=1 Tax=Mycoplasma pulmonis RepID=Q98PM2_MYCPU Length = 509 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 106/298 (35%), Gaps = 19/298 (6%) Query: 106 EGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLA 165 +GE + + + V ++ P + I F+ P+ R + +DL Sbjct: 89 DGEIVYPVTQNKTVVYE-PNLRKGNIFFQ---PVGMLERQHL----SEQLYTGILSIDLF 140 Query: 166 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG 225 +PIGRGQR +IV + GKT + N I + + + I + + ++ + +K Sbjct: 141 NPIGRGQREIIVGDKQTGKTHIALNTI--INQRNSGVKCIYVSIGQNNKNLSNVYTTLKN 198 Query: 226 ------EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVP 279 ++ E A + + + A+ L DV+I+ D +T+ A + Sbjct: 199 ANALDYTIIFEASSENAFDQYLIPHVAMAHAENL-SFNDDVLIVFDDLTKHANICREISL 257 Query: 280 ASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGT 338 K + + + + S+ + + +I Sbjct: 258 LIDKPIGKEAFPPDIFFTHSKLLERSGRFIGRKSIAALPIVKT-VDGNLASLISSNLISI 316 Query: 339 GNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 + ++ S K+ + PA+D + S +R + + Q L KI H + + Sbjct: 317 SDGQIVTSTKLFLEGKIPAVDLDFSVSRTGSSIQKKSVAQVSAKLSKIYHAYIRQEKL 374 >UniRef50_C1TMJ5 Archaeal/vacuolar-type H+-ATPase subunit B n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMJ5_9BACT Length = 455 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 91/270 (33%), Gaps = 14/270 (5%) Query: 120 NFDKPENARNKILF-ENLTPLHANSRLRMERGNGSTED-LTARVLDLASPIGRGQRGLIV 177 N + +ILF E+ P+ R + + +D+ + + +GQ+ I Sbjct: 93 NGRGLDERGEEILFCEDRIPVSGLPINPARRRSPRSFIQTGISTIDVMNTLVKGQKLPIF 152 Query: 178 APPKAGKTMLLQNIAQSIAYNHPDCVLMV-LLIDERPEE----VTEMQRL---VKGEVVA 229 A + I + L+V + E + +R KG Sbjct: 153 AGSGLPANEVTTQIVRQAKVRESSQFLVVFAAMGITKRESQYFIESFKRTGAIEKGVFFL 212 Query: 230 STFDEPASRHVQVAEMVIEKAKRLV-EHKKDVIILLDSITRLARAYNTVVPASGK-VLTG 287 + + A+ + M + A+ + DV++++ + A + A + Sbjct: 213 NLASDSAAERLLTPRMALTVAEYFAFQKGYDVLVVMTDMLHYCNALREISAAREEVPGRR 272 Query: 288 GVDANALHRPKRFFGAARNVEEG-GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 G + A +++ GS+T I + M + + ++ L Sbjct: 273 GYPGYMYSDLADLYERAGSIDGSDGSITQIPIITMP-DDDMTHPVIDLSGYITEGQIVLG 331 Query: 347 RKIAEKRVFPAIDYNRSGTRKEELLTTQEE 376 R + +K +FP ID S +R +++ Sbjct: 332 RDLHDKGIFPPIDVLPSLSRLMNKGIGKDQ 361 >UniRef50_C3W009 ATP synthase subunit alpha n=4 Tax=Spermatophyta RepID=C3W009_PINAT Length = 507 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 76/226 (33%), Gaps = 13/226 (5%) Query: 195 IAYNHPDCVLMVLLIDERPEEV-------TEMQRLVKGEVVASTFDEPASRHVQVAEMVI 247 + + + + + I +R V E + VVA T D PA+ Sbjct: 185 LNQKSQNVICVYVAIGQRASSVAQVVNTFRERGAMAYTIVVAETADSPATLQYLAPYTGA 244 Query: 248 EKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARN 306 A+ + K+ I+ D +++ A+AY + + + + R A Sbjct: 245 TLAEYFMYKKQHTSIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK 304 Query: 307 VEEG---GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRS 363 + GS+T + G + I + ++ S + + PAI+ S Sbjct: 305 LSSQLGEGSVTALPIVETQAG-DVSAYIPTNVISITDGQIFSSADLFNAGIRPAINVGIS 363 Query: 364 GTRKEELLTTQEELQKMWILRKIIHPMGEIDA-MEFLINKLAMTKT 408 +R + + L+ + E++A +F + T+ Sbjct: 364 VSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDKATQD 409 >UniRef50_C0QT22 V-type ATP synthase beta chain (V-type ATPase subunitB) n=1 Tax=Persephonella marina EX-H1 RepID=C0QT22_PERMH Length = 447 Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 94/278 (33%), Gaps = 18/278 (6%) Query: 140 HANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 199 + + RL E + +D + + +GQ+ + A L+ I + I Sbjct: 116 NPSKRLYPEEIIYT----GISSIDGLNTLVKGQKLPVFAVSGVPTDQLVAQIVRQIKTGS 171 Query: 200 PDCVLMVLLIDER-------PEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKR 252 + ++ + + E++T K V + DEP + + ++ Sbjct: 172 ENRATVLCAVGVKYETANYLIEDITSGGNFPKTAVFLNLADEPPVNSLISVRSALTLSEF 231 Query: 253 LV-EHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGVDANALHRPKRFFGAARNVEE- 309 L E DV++++ +T A + G+ G + A ++ Sbjct: 232 LAFEKGYDVVVVIYDMTNYCDALREISSKRGEIPGRKGYPGYMYSDLASIYERAGVLKGM 291 Query: 310 GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE 369 GS+T I L + I + ++ L R + ++ V+P ++ S +R Sbjct: 292 KGSVTQIP-VLTMPDDDITHPIPDLTGYITEGQIVLDRSLHQRGVYPPVNVLPSLSRLMN 350 Query: 370 LLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK 407 + +I + +E L + + T+ Sbjct: 351 RAVDDLHKRWAN---QIYSAYAKAKRVEMLASIVGETE 385 >UniRef50_A5DXZ0 Vacuolar ATP synthase catalytic subunit A n=6 Tax=Saccharomycetaceae RepID=A5DXZ0_LODEL Length = 1034 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 81/222 (36%), Gaps = 25/222 (11%) Query: 209 IDERPEEVTEM----------------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKR 252 ER E+ E+ + + +VA+T + P + I A+ Sbjct: 701 CGERGNEMAEVLMEFPELYTEIDGRKEPIMKRTTLVANTSNMPVAAREASIYTGITLAEY 760 Query: 253 LVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGG 311 + K+V ++ DS +R A A + G++ G A + F+ A G Sbjct: 761 FRDQGKNVSMIADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGKATALG 820 Query: 312 S-----LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR 366 S + A+ G + + G + L +K+A+++ FP+I+ + S ++ Sbjct: 821 SPDRVGSVSVVAAVSPAGGDFSDPVTTATLGITQVFWGLDKKLAQRKHFPSINTSVSYSK 880 Query: 367 KEELLTTQEELQKMWI--LRKIIHP-MGEIDAMEFLINKLAM 405 +L + LR I + + +E ++ + Sbjct: 881 YTNILNKYYDSNYAEFPQLRNKIKEILSNAEELEQVVQLVGK 922 Score = 51.8 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 66/197 (33%), Gaps = 47/197 (23%) Query: 50 FGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS-----PSQ-------IRRFNLRTGDTI 97 G G+L + DG ++ + IY+ P+ + L+ GD I Sbjct: 93 LGPGLLNTIYDG---IQRPLKEIKDETNSIYIPRGIDVPALSKTVQYDFKPGQLKVGDHI 149 Query: 98 SG-----------------KIRPPKEGERYFALLKVNEVNFDKPENARNKILFE------ 134 +G + PP+ + + E E+ ++ F+ Sbjct: 150 TGGDIFGSVFENSLLDDHKILLPPRARG---TITSIAEAGSYTVEDTVLEVEFDGKKHKY 206 Query: 135 ---NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNI 191 + P+ + + RVLD P +G I GKT++ Q++ Sbjct: 207 SMMHTWPVRVPRPVAEKLTADYPLLTGQRVLDSLFPCVQGGTTCIPGAFGCGKTVISQSL 266 Query: 192 AQSIAYNHPDCVLMVLL 208 ++ Y++ D ++ V Sbjct: 267 SK---YSNSDVIIYVGC 280 >UniRef50_Q5LD89 ATP synthase subunit beta n=30 Tax=Bacteroidetes RepID=ATPB_BACFN Length = 505 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 63/363 (17%), Positives = 121/363 (33%), Gaps = 74/363 (20%) Query: 83 PSQI--RRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLH 140 QI R N+ GD+I G ++G R+ FE+LT + Sbjct: 88 GEQIKGRLMNV-VGDSIDGMKELNRDG---------------AYSIHRDPPKFEDLTTVQ 131 Query: 141 ANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200 +V+DL P +G + + GKT+L+ + +IA H Sbjct: 132 ------------EVLFTGIKVIDLLEPYSKGGKIGLFGGAGVGKTVLIMELINNIAKKH- 178 Query: 201 DCVLMVLLIDERPEE----VTEMQRL------------------------------VKGE 226 + + + ER E + EM + Sbjct: 179 NGFSVFAGVGERTREGNDLLREMIESGVIRYGEAFKESMEKGHWDLSKVDYNEVEKSQAT 238 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHK-----KDVIILLDSITRLARAYNTVVPAS 281 +V +EP VA + A+ + +D++ +D+I R +A + V Sbjct: 239 LVFGQMNEPPGARASVALSGLTVAESFRDMGAKSGARDILFFIDNIFRFTQAGSEVSALL 298 Query: 282 GKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGN 340 G++ + G + + GS+T + + + + + Sbjct: 299 GRMPSAVGYQPTLATEMGAMQERITSTKT-GSITSVQAVYVPA-DDLTDPAPATTFTHLD 356 Query: 341 MELHLSRKIAEKRVFPAIDYNRSGTR-KEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 LSRKI E ++PA+D S +R + + QE +++I+ E+ + + Sbjct: 357 ATTVLSRKITELGIYPAVDPLESTSRILDPHIVGQEHYDVAQRVKQILQRNKELQDIISI 416 Query: 400 INK 402 + Sbjct: 417 LGM 419 >UniRef50_B9L759 V-type ATP synthase beta chain n=1 Tax=Nautilia profundicola AmH RepID=B9L759_NAUPA Length = 442 Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 41/249 (16%), Positives = 87/249 (34%), Gaps = 11/249 (4%) Query: 161 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID---ERPEEVT 217 +D + + +GQ+ I A + +A I+ + ++++ I ER + + Sbjct: 132 AIDALNTLVKGQKLPIFALSGLKNDEFVAKLATQISIKNS--LIILAAIGMRFERAQYLI 189 Query: 218 EMQRLVKGEVVA--STFDEPASRHVQVAEMVIEKAKRLV-EHKKDVIILLDSITRLARAY 274 ++ + +EP + + + A+ + E K+VI++L +T A A Sbjct: 190 NSISNKSSQITVFLNLANEPTINSLLLPRTALTFAEYMAFEKGKNVIVILYDMTNYANAL 249 Query: 275 NTVVPASGK-VLTGGVDANALHRPKRFFGAARNVEEG-GSLTIIATALIDTGSKMDEVIY 332 + + G + A ++ GS+T I L + I Sbjct: 250 REISSKKEEIPGKKGYPGYMYSDLASIYERAGIIKGKKGSITQIP-VLTLPDDDITHPIA 308 Query: 333 EEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE 392 + ++ SR + +K +FP ID S +R + L + Sbjct: 309 DLSGYITEGQIVFSRSLHKKGIFPPIDVLSSLSRLMNSAIDSTHKRFASQLYASYANAKK 368 Query: 393 IDAMEFLIN 401 I+ +I Sbjct: 369 IENFASIIG 377 >UniRef50_Q3J9F4 V-type ATP synthase beta chain n=44 Tax=Bacteria RepID=VATB_NITOC Length = 479 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 48/312 (15%), Positives = 111/312 (35%), Gaps = 22/312 (7%) Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 D+P N P++ +R + + +D + + RGQ+ I + Sbjct: 99 DDRPPMIAPLKRNVNGAPVNPVARAYPQEFIQT----GIAAIDGLNSLVRGQKLPIFSGS 154 Query: 181 KAGKTMLLQNIAQ--SIAYNHPDCVLMVLLIDERPEEVTEMQRL-----VKGEVVA--ST 231 L I + + V++ + + Q V G+VV + Sbjct: 155 GLPHNRLAAQIVRQAKLLGEETRFVMVFAAMGVTYSDARFFQEEFENSGVLGKVVMYLNL 214 Query: 232 FDEPASRHVQVAEMVIEKAKRLV-EHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GV 289 D+P + + + + A+ L E V++++ +T A A V A G V + G Sbjct: 215 ADDPPIKRLLLPRTALACAEYLAFEQDLHVLVVMTDMTHYAEALREVATAKGDVPSRKGY 274 Query: 290 DANALHRPKRFFGAARNVEEG-GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 + A ++ GS+T++ + + + I + ++ LSR+ Sbjct: 275 PGYLYSDLAEIYERAGRIKNRRGSITMVPVVSMPS-DDITHPIPDLTGYITEGQIVLSRE 333 Query: 349 IAEKRVFPAIDYNRSGTRKEEL-----LTTQEELQKMWILRKIIHPMGEIDAMEFLINKL 403 + + ++P ++ S +R + T ++ + L E+ + +I Sbjct: 334 LHHQGIYPPVNIPPSLSRLMKDGIGKNSTREDHPRVASQLYAAYAKALEVRNLASIIGAE 393 Query: 404 AMTKTNDDFFEM 415 ++ ++ F + Sbjct: 394 ELSPSDRQFLDF 405 >UniRef50_A3MU07 V-type ATP synthase beta chain n=5 Tax=Thermoproteaceae RepID=VATB_PYRCJ Length = 467 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 44/297 (14%), Positives = 100/297 (33%), Gaps = 23/297 (7%) Query: 123 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKA 182 PE+ R+ N PL+ SR E + +D + RGQ+ I + Sbjct: 107 PPEDFRDV----NGEPLNPYSREYPE----EPIETGISAIDGLYTLVRGQKLPIFSGTGL 158 Query: 183 GKTMLLQNIAQS--IAYNHPDCVLMVLLIDERPEE----VTEMQRL---VKGEVVASTFD 233 M+ + + + + + ++ + I + EE + E ++ + V + Sbjct: 159 PHNMMAAQVVRQSTVRGSGEEFAVVFVGIGIKTEEALFFMDEFRKTGALRRAVAVINLAS 218 Query: 234 EPASRHVQVAEMVIEKAKRLVEH-KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDA 291 +P + + + + A+ L V++++ +T + G++ G Sbjct: 219 DPVAERILAPRVGLTIAEYLAWQLGYHVLVVMTDMTNYCEGLRELSSGKGELPGRRGYPG 278 Query: 292 NALHRPKRFFGAARNVEEG-GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA 350 + A GS+T L + I + +L LSR + Sbjct: 279 YMYTDLATIYERAGKAHGKKGSVTQFP-ILTMPNDDITHPIPDLTGYITEGQLVLSRAMW 337 Query: 351 EKRVFPAIDYNRSGTRKEELLTTQEELQKMW--ILRKIIHPMGEIDAMEFLINKLAM 405 K ++P D S +R + + + ++ + +I + + L + Sbjct: 338 GKGIYPPFDVIMSLSRLAKDAIGEGKTREDHKDVANTLIAAYSKALELRNLATLVGE 394 >UniRef50_A9GHR6 ATP synthase subunit alpha n=4 Tax=cellular organisms RepID=ATPA_SORC5 Length = 630 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 91/284 (32%), Gaps = 37/284 (13%) Query: 54 VLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFAL 113 VL + QD G D+S + D + + R + G+ G++ Sbjct: 67 VLNLEQDNVGAAIFGDTSSIKEGDAVKRTG---RIMEVPVGEATLGRVVNALG------- 116 Query: 114 LKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQR 173 ++ P + + E P + + + +D P+GRGQR Sbjct: 117 ---MPIDGKGPLETKERRRVEVKAP-----GIIQRQPVTEPMQTGIKAIDAMIPVGRGQR 168 Query: 174 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ-------RLVKGE 226 LI+ + GKT + + I + + + I ++ V ++ L Sbjct: 169 ELIIGDRQTGKTAVAVDAI--INQKGKGVICVYVAIGQKLSTVRQVVDKLDAHGALEYTI 226 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT 286 +VA+T E A + + + + + + D +++ A AY + + Sbjct: 227 IVAATASETAPLQFIAPYTGVTIGEYFRDSGRHALCIYDDLSKQAVAYRQLSLLLRRPPG 286 Query: 287 G-GVDANALHRPKRFFGAARNVEEGGSLTIIATAL----IDTGS 325 + + R A + + + I+ G Sbjct: 287 REAYPGDVFYLHSRLLERAAKMAD-----VFYVVSKGTKIEGGD 325 Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 2/112 (1%) Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 + R+ + GGSLT + G + I + ++ L + V PAI+ Sbjct: 389 YEIVRDPKSGGSLTALPVIETQAG-DVSAYIPTNVISITDGQIFLEADLFYSGVRPAINV 447 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDA-MEFLINKLAMTKTNDD 411 S +R + LR + + A +F + A T+ + Sbjct: 448 GISVSRVGGNAQIKAMKSIAGTLRLDLAQYRAMAAFSQFASDLDAKTRAQLE 499 >UniRef50_Q93EE2 Probable transcription termination factor (Fragment) n=1 Tax=Helicobacter hepaticus RepID=Q93EE2_HELHP Length = 95 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 42/95 (44%), Positives = 59/95 (62%) Query: 37 AILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDT 96 ILK G I G+L+I +G+GFLR+ S +D YVS SQIRRF LR GD Sbjct: 1 EILKTQVNQGGYILFSGILDITNEGYGFLRALTESLADSQNDTYVSQSQIRRFALRNGDI 60 Query: 97 ISGKIRPPKEGERYFALLKVNEVNFDKPENARNKI 131 ++G++R PK+ ERY+ALLK+ +N+ E +N+ Sbjct: 61 VTGQVRAPKDQERYYALLKIEAINYMSLEENKNRP 95 >UniRef50_C4DDR1 Archaeal/vacuolar-type H+-ATPase subunit B n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DDR1_9ACTO Length = 466 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 89/274 (32%), Gaps = 16/274 (5%) Query: 119 VNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVA 178 V+ P ++ +P++ R+ V+D + + RGQ+ + + Sbjct: 101 VDGGPPILGSERLPVA-GSPINPTRRMP----PSEPVHTGVSVVDGLTTLVRGQKLPVFS 155 Query: 179 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID---ERPEEVTEM--QRLVKGEVVA--ST 231 P L IA ++ + ++ +R GE+V +T Sbjct: 156 IPGLPHLELATQIAAQAHTGGEPFCVVFAGMGLSHADAAAARDVLAERAAAGELVLLLNT 215 Query: 232 FDEPASRHVQVAEMVIEKAKRLV-EHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGV 289 DEP V + + A+ L + V+++L +T A A V A G Sbjct: 216 ADEPVIERVVTPRVALTIAENLAFGQGRHVLVVLTDMTSYAEALREVATARHDIPARRGY 275 Query: 290 DANALHRPKRFFGAARNVEEG-GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 + + + GS+TI+ L + + + ++ LS + Sbjct: 276 PGYLYSDLASLYERCGRLRDRPGSVTIVP-VLTMPAGDLTHPVPDLTGYITEGQVVLSAR 334 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWI 382 V+P +D S +R + + Sbjct: 335 AHGSGVYPPVDPLASLSRLMRHGAGPGRTRDDHL 368 >UniRef50_UPI00017437AB transcription termination factor Rho n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00017437AB Length = 123 Score = 124 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 51/121 (42%), Positives = 79/121 (65%), Gaps = 5/121 (4%) Query: 101 IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR 160 I+ + +LKV VN D PE + + F++L P + + +L + G ++++R Sbjct: 8 IKNSDWNRENYGILKVLLVNGDLPEKSLERPYFDDLVPSYPDEKLNLGGG-----EISSR 62 Query: 161 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ 220 ++DL SPIG+GQRGLIVAPPKAGKT+LL +A + +P+ + +LLIDERPEEVT+++ Sbjct: 63 IIDLVSPIGKGQRGLIVAPPKAGKTVLLSTLANDVIKYNPEIDVWILLIDERPEEVTDIK 122 Query: 221 R 221 Sbjct: 123 E 123 >UniRef50_UPI0001B4F835 V-type ATP synthase subunit B n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B4F835 Length = 469 Score = 124 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 37/255 (14%), Positives = 84/255 (32%), Gaps = 15/255 (5%) Query: 138 PLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 197 P++ R +D + + RGQ+ + + L IA Sbjct: 119 PVNPVRR----EPPSEPVLTGVGAVDTLTTLARGQKLPVFSTAGLPHLELAAQIAAQSTT 174 Query: 198 NHPDCVLMVLLIDERPEE---VTEM--QRLVKGEVVA--STFDEPASRHVQVAEMVIEKA 250 + ++ + + V + +R GE+V +T D+P + + + A Sbjct: 175 SGAAFSVVFAGMGLTHADAAFVRDALEERSAAGELVLLLNTADDPVIERILTPRIALTVA 234 Query: 251 KRLV-EHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGVDANALHRPKRFFGAARNVE 308 + L + V++++ +T A A V A G+ + + Sbjct: 235 EHLAFTGGRHVLVVMSDMTMYAEALREVSAARGEIPARRAYPGYLYSDLASLYERCGRIR 294 Query: 309 EG-GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRK 367 GS+T++ L + + + ++ LS + + V+P +D S +R Sbjct: 295 GRPGSVTVLP-VLTMPAGDITHPVPDLTGYITEGQIVLSPETHARGVYPPLDALSSLSRL 353 Query: 368 EELLTTQEELQKMWI 382 ++ + Sbjct: 354 MRKGAGPGRTREDHL 368 >UniRef50_Q71UA2 H+-ATPase beta 1 subunit (Fragment) n=14 Tax=Eumetazoa RepID=Q71UA2_HUMAN Length = 426 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 50/309 (16%), Positives = 115/309 (37%), Gaps = 30/309 (9%) Query: 135 NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 194 N P++ +SR+ E +D+ + I RGQ+ I + + I + Sbjct: 112 NGQPINPHSRIYPE----EMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 167 Query: 195 ----------IAYNHPDCVLMVLLIDERPEEVT----EMQRL-VKGEV--VASTFDEPAS 237 + Y+ + ++ + E + ++ G V + ++P Sbjct: 168 AGLVKKSKAVLDYHDDNFAIVFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTI 227 Query: 238 RHVQVAEMVIEKAKRLVEH-KKDVIILLDSITRLARAYNTVVPASGK-VLTGGVDANALH 295 + + + A+ L +K V+++L ++ A A V A + G Sbjct: 228 ERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYT 287 Query: 296 RPKRFFGAARNVE-EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRV 354 + A VE GGS+T I L + I + ++++ R++ +++ Sbjct: 288 DLATIYERAGRVEGRGGSITQIP-ILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQI 346 Query: 355 FPAIDYNRSGTRKE-----ELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 +P I+ S +R E +T ++ L ++ AM+ ++ + A+T + Sbjct: 347 YPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEALTSED 406 Query: 410 DDFFEMMKR 418 + E +++ Sbjct: 407 LLYLEFLQK 415 >UniRef50_P15313 V-type proton ATPase subunit B, kidney isoform n=569 Tax=root RepID=VATB1_HUMAN Length = 513 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 50/309 (16%), Positives = 115/309 (37%), Gaps = 30/309 (9%) Query: 135 NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 194 N P++ +SR+ E +D+ + I RGQ+ I + + I + Sbjct: 148 NGQPINPHSRIYPE----EMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQ 203 Query: 195 ----------IAYNHPDCVLMVLLIDERPEEVT----EMQRL-VKGEV--VASTFDEPAS 237 + Y+ + ++ + E + ++ G V + ++P Sbjct: 204 AGLVKKSKAVLDYHDDNFAIVFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTI 263 Query: 238 RHVQVAEMVIEKAKRLVEH-KKDVIILLDSITRLARAYNTVVPASGK-VLTGGVDANALH 295 + + + A+ L +K V+++L ++ A A V A + G Sbjct: 264 ERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYT 323 Query: 296 RPKRFFGAARNVE-EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRV 354 + A VE GGS+T I L + I + ++++ R++ +++ Sbjct: 324 DLATIYERAGRVEGRGGSITQIP-ILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQI 382 Query: 355 FPAIDYNRSGTRKE-----ELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 +P I+ S +R E +T ++ L ++ AM+ ++ + A+T + Sbjct: 383 YPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEALTSED 442 Query: 410 DDFFEMMKR 418 + E +++ Sbjct: 443 LLYLEFLQK 451 >UniRef50_B8JE34 V-type ATP synthase beta chain n=5 Tax=Deltaproteobacteria RepID=VATB_ANAD2 Length = 477 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 85/273 (31%), Gaps = 13/273 (4%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTE-DLTARVLDLASPIGRGQRGLIVAPP 180 +P + + E +H + R S + +D + + RGQ+ + + Sbjct: 103 GRPADGLPPPVPEARPAIHGAALNVTRREKPSDFIETGVSAIDGMNTLVRGQKLPVFSCA 162 Query: 181 KAGKTMLLQNI-AQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVASTF 232 + L I Q+ ++ + E L + V + Sbjct: 163 GLPASRLAAQIVCQARVRGGEAFAVVFAAMGSPFREYHAFLEAFRAAGVLARTVVFLNRA 222 Query: 233 DEPASRHVQVAEMVIEKAKRLV-EHKKDVIILLDSITRLARAYNTVVPASGK-VLTGGVD 290 ++P + + A+ L H V+++L +T A V A + G Sbjct: 223 EDPPIERLMTPRCALTCAEHLAFVHGLHVLVVLTDVTSYCEALREVALAREEVPGRRGYP 282 Query: 291 ANALHRPKRFFGAARNVEEG-GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 349 F A V GSLT + L + I + ++ LSR + Sbjct: 283 GYMYTDLATIFERAGRVRGRPGSLTQLP-VLTMPDDDLTHPIPDLTGYITEGQIVLSRDL 341 Query: 350 AEKRVFPAIDYNRSGTRKEELLTTQEELQKMWI 382 + V+P ID S +R L + + Sbjct: 342 DRRGVYPPIDVLPSLSRLMGLGAGPGKTRDDHR 374 >UniRef50_O50140 ATP synthase subunit alpha n=4 Tax=cellular organisms RepID=O50140_RUMAL Length = 523 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 56/311 (18%), Positives = 107/311 (34%), Gaps = 39/311 (12%) Query: 90 NLRTGDTIS--GKIRPPKEGERYFALLKVNEVN-FDKPENARNKILFENLTPLH-ANSRL 145 +R G + G+I GE L +V VN P + + IL P+ + Sbjct: 81 GIREGSNVKRTGRIVSVPVGE--AMLGRV--VNALGAPIDGKGAILTNETRPVESPAFGI 136 Query: 146 RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 205 + + +D P+GRGQR LI+ + GKT + + + + + + Sbjct: 137 ITRKSVNRPLQTGIKAIDSMIPVGRGQRELIIGDRQTGKTTIALDTIINQKGKN--VICI 194 Query: 206 VLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEM-VIEKAKRLVEHK 257 + I ++ V + + VV++T E A V+ A+ + + Sbjct: 195 YVAIGQKISTVANIVDTLTKNDAMDYSIVVSATASEMAPLQYIAPYASVLLMAEYFMYTR 254 Query: 258 KDVIILLD----SITRLARAYNTVV---PASGKVLTGGVDANAL---HRPKRFFGAAR-- 305 + ++ D S T +A + T G+ A+ + R G R Sbjct: 255 ANDVLCADTDDLSSTLYRQAVQIAICTLLLKRPTGTCGIMIPAIGDVYLHSRLSGRERDY 314 Query: 306 -----NVEEGGSLTIIAT--ALIDTGSKMDEVIYEEFKGTGNMELHL--SRKIAEKRVFP 356 + GGS+T + + + I + + +R + V P Sbjct: 315 DHRYMKINGGGSITALPSHRNIRQVNKVYKAYIPTNVISITDGHRYFLGNRAVLSSGVRP 374 Query: 357 AIDYNRSGTRK 367 A++ S +R Sbjct: 375 AVNPGISVSRV 385 >UniRef50_A0D564 ATP synthase subunit alpha n=2 Tax=Paramecium tetraurelia RepID=A0D564_PARTE Length = 612 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 72/218 (33%), Gaps = 23/218 (10%) Query: 92 RTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTP-LHANSRLRMERG 150 RTG + I G + AL N ++ P + E P + + Sbjct: 113 RTGAIVDVPIGMEMLGRVFDALG--NPIDGHGPVKTNTRRRVELKAPGIIPRKSVH---- 166 Query: 151 NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN------HPDCVL 204 + +D PIGRGQR LI+ + GKT + + + N + Sbjct: 167 --EPMQTGLKAVDCLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKPNFDSGDKNKQLYC 224 Query: 205 MVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK 257 + + I ++ V + + + VVA+T E A + ++ Sbjct: 225 IYVAIGQKRSTVANLVKILTQAGAMKYTIVVAATASEAAPLQYLAPYSGCAIGEYFRDNG 284 Query: 258 KDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANAL 294 +I+ D +++ A AY + + + Sbjct: 285 MHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVF 322 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q1RIJ6 Transcription termination factor n=863 Tax=cellu... 451 e-125 UniRef50_C5CGH1 Transcription termination factor Rho n=1 Tax=Kos... 447 e-124 UniRef50_B2IAB8 Transcription termination factor Rho n=6 Tax=Bac... 443 e-123 UniRef50_P52156 Transcription termination factor rho n=224 Tax=B... 442 e-123 UniRef50_A6DIN5 Transcription termination factor Rho n=2 Tax=Chl... 441 e-122 UniRef50_C8PNN3 Transcription termination factor Rho n=1 Tax=Tre... 438 e-121 UniRef50_D1N6X9 Transcription termination factor Rho n=1 Tax=Vic... 437 e-121 UniRef50_D1CBT1 Transcription termination factor Rho n=9 Tax=Bac... 437 e-121 UniRef50_Q9ZLS9 Transcription termination factor rho n=117 Tax=B... 435 e-120 UniRef50_D2R072 Transcription termination factor Rho n=1 Tax=Pir... 424 e-117 UniRef50_A9BEQ5 Transcription termination factor Rho n=3 Tax=Bac... 418 e-115 UniRef50_O83281 Transcription termination factor rho n=27 Tax=Ba... 416 e-115 UniRef50_Q7UGV0 Probable transcription termination factor n=1 Ta... 408 e-112 UniRef50_C7PLF9 Transcription termination factor Rho n=1 Tax=Chi... 404 e-111 UniRef50_D2QLY9 Transcription termination factor Rho n=2 Tax=Fle... 399 e-109 UniRef50_C2D7C6 Possible transcription termination factor Rho n=... 399 e-109 UniRef50_B5JM54 Rho termination factor, RNA-binding domain famil... 399 e-109 UniRef50_D0MEG0 Transcription termination factor Rho n=1 Tax=Rho... 397 e-109 UniRef50_D1PY04 Transcription termination factor Rho n=1 Tax=Pre... 396 e-109 UniRef50_P52153 Transcription termination factor rho n=16 Tax=Ba... 395 e-108 UniRef50_C2MD13 Transcription termination factor Rho n=1 Tax=Por... 389 e-106 UniRef50_B1ZZF9 Transcription termination factor Rho n=1 Tax=Opi... 389 e-106 UniRef50_C8WA24 Transcription termination factor Rho n=133 Tax=B... 388 e-106 UniRef50_D1P9V5 Transcription termination factor Rho n=1 Tax=Pre... 386 e-106 UniRef50_D1VSG2 Transcription termination factor Rho n=1 Tax=Pep... 382 e-104 UniRef50_C9RLJ9 Transcription termination factor Rho n=1 Tax=Fib... 381 e-104 UniRef50_Q0TNA5 Transcription termination factor Rho n=24 Tax=Ba... 380 e-104 UniRef50_C7HUP3 Transcription termination factor Rho n=1 Tax=Ana... 377 e-103 UniRef50_B1I6H8 Transcription termination factor Rho n=6 Tax=Bac... 376 e-103 UniRef50_Q1AVG2 Transcription termination factor Rho n=1 Tax=Rub... 376 e-102 UniRef50_C9XS91 Transcription termination factor Rho n=16 Tax=Ba... 376 e-102 UniRef50_B1R2H4 Transcription termination factor Rho n=3 Tax=Clo... 375 e-102 UniRef50_B6WAG5 Putative uncharacterized protein n=1 Tax=Anaeroc... 373 e-102 UniRef50_A9KHD0 Transcription termination factor Rho n=13 Tax=Cl... 372 e-101 UniRef50_P52157 Transcription termination factor rho n=260 Tax=c... 371 e-101 UniRef50_A7BDQ9 Putative uncharacterized protein n=1 Tax=Actinom... 365 2e-99 UniRef50_B2UR37 Transcription termination factor Rho n=2 Tax=Ver... 364 4e-99 UniRef50_C5RGE3 Transcription termination factor Rho n=1 Tax=Clo... 359 1e-97 UniRef50_P45835 Transcription termination factor rho n=20 Tax=Ac... 357 6e-97 UniRef50_A5TX87 Transcription termination factor Rho n=11 Tax=Ba... 355 1e-96 UniRef50_C2CU97 Transcription termination factor Rho n=1 Tax=Gar... 352 2e-95 UniRef50_C4GAL5 Putative uncharacterized protein n=2 Tax=Bacteri... 349 1e-94 UniRef50_C4G1L0 Putative uncharacterized protein n=1 Tax=Abiotro... 347 3e-94 UniRef50_C7M177 Transcription termination factor Rho n=1 Tax=Aci... 343 5e-93 UniRef50_B8DWV6 Transcription termination factor Rho n=4 Tax=Bif... 343 6e-93 UniRef50_C2KVL4 Transcription termination factor Rho n=1 Tax=Ori... 339 1e-91 UniRef50_A6CBM4 Transcription termination factor Rho n=3 Tax=Pla... 333 7e-90 UniRef50_D2QWP2 Transcription termination factor Rho n=3 Tax=Pla... 328 2e-88 UniRef50_B1ZX59 H+transporting two-sector ATPase alpha/beta subu... 327 7e-88 UniRef50_C0ACT9 H+transporting two-sector ATPase alpha/beta subu... 322 1e-86 UniRef50_C1A5H8 Transcription termination factor n=1 Tax=Gemmati... 320 5e-86 UniRef50_B2UQ10 Transcription termination factor Rho n=2 Tax=Bac... 314 4e-84 UniRef50_Q1D9H4 Transcription termination factor Rho n=5 Tax=Myx... 313 6e-84 UniRef50_Q9FC33 Putative transcription terminator factor n=2 Tax... 312 1e-83 UniRef50_C0QKE9 Rho1 n=1 Tax=Desulfobacterium autotrophicum HRM2... 311 3e-83 UniRef50_B4CU50 Transcription termination factor Rho n=3 Tax=Ver... 310 6e-83 UniRef50_Q2S040 Transcription termination factor rho n=1 Tax=Sal... 302 2e-80 UniRef50_P35381 ATP synthase subunit alpha, mitochondrial n=46 T... 288 2e-76 UniRef50_B2A3G4 ATP synthase subunit alpha n=4 Tax=Bacteria RepI... 286 7e-76 UniRef50_C0QAK1 FliI n=9 Tax=root RepID=C0QAK1_DESAH 286 9e-76 UniRef50_P74857 Probable secretion system apparatus ATP synthase... 286 1e-75 UniRef50_Q65JM5 Flagellar-specific ATP synthase n=9 Tax=Bacteria... 286 1e-75 UniRef50_Q2LRZ2 Flagellum-specific ATP synthase n=20 Tax=Bacteri... 286 1e-75 UniRef50_B1H0B7 ATP synthase subunit alpha n=3 Tax=Bacteria RepI... 285 2e-75 UniRef50_Q0EZL2 Flagellum-specific ATP synthase n=1 Tax=Mariprof... 285 3e-75 UniRef50_Q05FY3 ATP synthase subunit alpha n=33 Tax=Gammaproteob... 284 5e-75 UniRef50_Q9ZJJ3 Flagellum-specific ATP synthase n=41 Tax=Epsilon... 284 5e-75 UniRef50_P25705 ATP synthase subunit alpha, mitochondrial n=1593... 281 2e-74 UniRef50_D1B4Z7 Flagellar protein export ATPase FliI n=6 Tax=Cam... 280 5e-74 UniRef50_D2LCY5 ATPase, FliI/YscN family n=1 Tax=Rhodomicrobium ... 280 7e-74 UniRef50_P80153 Probable ATP synthase hrpB6 n=230 Tax=Bacteria R... 280 9e-74 UniRef50_O83417 Flagellum-specific ATP synthase n=106 Tax=Bacter... 279 1e-73 UniRef50_A0AGH1 Complete genome n=21 Tax=Listeria RepID=A0AGH1_L... 279 2e-73 UniRef50_C9KMG4 ATP synthase subunit alpha n=1 Tax=Mitsuokella m... 278 2e-73 UniRef50_O85632 EscN n=34 Tax=Enterobacteriaceae RepID=O85632_ECOLX 278 3e-73 UniRef50_B9L4D4 Flagellar protein export ATPase FliI n=13 Tax=Ba... 278 3e-73 UniRef50_A0RC86 Flagellum-specific ATP synthase n=70 Tax=Bacillu... 276 8e-73 UniRef50_Q5DY25 Lateral flagellar export/assembly protein (LfiI-... 276 8e-73 UniRef50_Q9I4N1 Flagellum-specific ATP synthase n=174 Tax=Proteo... 276 9e-73 UniRef50_C0QZ72 Flagellar biosynthesis/type III secretory pathwa... 275 2e-72 UniRef50_A1T0I0 ATPase, FliI/YscN family protein n=1 Tax=Psychro... 274 4e-72 UniRef50_C0QPA7 Flagellar protein export ATPase FliI n=1 Tax=Per... 274 5e-72 UniRef50_Q1AVH7 ATP synthase subunit alpha n=71 Tax=cellular org... 274 5e-72 UniRef50_P52607 Flagellum-specific ATP synthase n=21 Tax=Borreli... 273 7e-72 UniRef50_UPI0001C31239 flagellar protein export ATPase FliI n=1 ... 273 7e-72 UniRef50_D2TY23 Type III secretion cytoplasmic ATP synthase (Ysc... 271 3e-71 UniRef50_C1A560 Flagellum-specific ATP synthase n=6 Tax=Bacteria... 271 4e-71 UniRef50_Q2RX15 ATPase FliI/YscN n=35 Tax=Alphaproteobacteria Re... 271 5e-71 UniRef50_A6W8K0 ATPase, FliI/YscN family n=44 Tax=Bacteria RepID... 270 8e-71 UniRef50_C1F987 Flagellar protein export ATPase FliI n=1 Tax=Aci... 269 1e-70 UniRef50_B7AW25 ATP synthase subunit alpha n=10 Tax=Bacteria Rep... 269 2e-70 UniRef50_A7HV56 Flagellar protein export ATPase FliI n=8 Tax=Rhi... 267 5e-70 UniRef50_Q1D9L1 ATPase, FliI/YscN family n=2 Tax=Cystobacterinea... 266 9e-70 UniRef50_Q2ST36 ATP synthase subunit alpha n=4 Tax=Mycoplasma my... 266 1e-69 UniRef50_Q1K2D4 ATP synthase subunit alpha n=1 Tax=Desulfuromona... 266 1e-69 UniRef50_C5CYE4 ATPase, FliI/YscN family n=1 Tax=Variovorax para... 266 1e-69 UniRef50_D2R528 ATPase, FliI/YscN family n=4 Tax=Planctomycetace... 266 1e-69 UniRef50_C6N705 Flagellar protein export ATPase FliI n=1 Tax=Leg... 266 1e-69 UniRef50_A5GCR1 H+-transporting two-sector ATPase, alpha/beta su... 265 2e-69 UniRef50_B1AIC1 ATP synthase subunit alpha n=43 Tax=Bacteria Rep... 265 3e-69 UniRef50_C7R0J8 ATPase, FliI/YscN family n=1 Tax=Jonesia denitri... 265 3e-69 UniRef50_B0SE01 Endoflagellar biosynthesis/type III secretory pa... 264 4e-69 UniRef50_D1BD12 Type III secretion system ATPase, FliI/YscN n=1 ... 264 5e-69 UniRef50_C0QS16 ATP synthase subunit alpha n=2 Tax=Bacteria RepI... 264 5e-69 UniRef50_P55717 Probable ATP synthase y4yI n=30 Tax=Bacteria Rep... 263 7e-69 UniRef50_P0A1C0 Probable ATP synthase spaL n=121 Tax=Proteobacte... 263 1e-68 UniRef50_C8WBT8 ATPase, FliI/YscN family n=7 Tax=Sphingomonadale... 261 3e-68 UniRef50_O34171 Flagellum-specific ATP synthase n=19 Tax=Alphapr... 261 3e-68 UniRef50_B8J143 ATPase FliI/YscN n=13 Tax=cellular organisms Rep... 261 4e-68 UniRef50_Q21Z99 ATP synthase subunit alpha 2 n=29 Tax=cellular o... 260 6e-68 UniRef50_Q2RV20 ATP synthase subunit alpha n=257 Tax=cellular or... 260 6e-68 UniRef50_B3Q296 Type III secretion system ATP synthase protein n... 260 7e-68 UniRef50_B5YBQ0 ATP synthase subunit alpha n=2 Tax=Dictyoglomus ... 260 1e-67 UniRef50_D2BZ50 Type III secretion apparatus H+-transporting two... 258 3e-67 UniRef50_D1PIS0 ATP synthase subunit alpha n=1 Tax=Subdoligranul... 258 3e-67 UniRef50_UPI00016C3500 Flagellar biosynthesis/type III secretory... 257 4e-67 UniRef50_A3SFS3 Flagellum-specific ATP synthase n=3 Tax=Rhodobac... 257 7e-67 UniRef50_B2V6Q6 Flagellar protein export ATPase FliI n=4 Tax=Bac... 256 2e-66 UniRef50_Q3A946 ATP synthase subunit beta n=5 Tax=Bacteria RepID... 255 2e-66 UniRef50_B8ZR40 ATP synthase subunit alpha n=56 Tax=Bacteria Rep... 255 2e-66 UniRef50_Q058C4 Flagellum-specific ATP synthase n=2 Tax=cellular... 255 3e-66 UniRef50_A6VWI3 H+transporting two-sector ATPase alpha/beta subu... 253 1e-65 UniRef50_P38606 V-type proton ATPase catalytic subunit A n=397 T... 252 1e-65 UniRef50_Q6AGA5 Flagellum-like ATP synthase n=1 Tax=Leifsonia xy... 252 2e-65 UniRef50_P52612 Flagellum-specific ATP synthase n=269 Tax=Proteo... 252 2e-65 UniRef50_C3KNB0 Type III secretion component, RhcN, ATP synthase... 251 2e-65 UniRef50_Q4JUJ8 ATP synthase subunit alpha n=54 Tax=Actinobacter... 251 3e-65 UniRef50_O67531 Flagellum-specific ATP synthase n=3 Tax=Aquifica... 251 3e-65 UniRef50_C6DIX7 Type III secretion apparatus H+-transporting two... 251 3e-65 UniRef50_Q1GNY4 ATPase FliI/YscN n=3 Tax=Bacteria RepID=Q1GNY4_S... 251 5e-65 UniRef50_Q12T73 ATPase FliI/YscN n=1 Tax=Shewanella denitrifican... 250 5e-65 UniRef50_A1WUC0 Flagellar protein export ATPase FliI n=15 Tax=Ba... 250 9e-65 UniRef50_A1UTV1 Flagellum-specific ATP synthase n=55 Tax=Alphapr... 249 1e-64 UniRef50_Q8T4C4 ATP synthase subunit beta n=8 Tax=cellular organ... 249 1e-64 UniRef50_Q141X8 ATPase FliI/YscN n=11 Tax=Proteobacteria RepID=Q... 249 1e-64 UniRef50_A3V245 FliI, Flagellum-specific ATPase n=4 Tax=Rhodobac... 249 2e-64 UniRef50_C8W8D3 ATP synthase subunit alpha n=2 Tax=Atopobium Rep... 248 2e-64 UniRef50_A3FPS2 ATP synthase subunit alpha n=2 Tax=Cryptosporidi... 248 2e-64 UniRef50_Q0AEI9 ATP synthase subunit alpha 2 n=5 Tax=Proteobacte... 248 4e-64 UniRef50_Q2S432 ATP synthase subunit alpha n=4 Tax=Bacteria RepI... 246 9e-64 UniRef50_Q52371 Type III secretion ATP synthase hrcN n=14 Tax=Ps... 246 1e-63 UniRef50_A1SHI9 ATP synthase subunit alpha n=2145 Tax=cellular o... 246 1e-63 UniRef50_A6GN32 Type III secretion protein n=1 Tax=Limnobacter s... 246 1e-63 UniRef50_Q9C5A9 ATP synthase subunit beta-3, mitochondrial n=930... 246 2e-63 UniRef50_B1TCL2 ATPase, FliI/YscN family n=1 Tax=Burkholderia am... 246 2e-63 UniRef50_A2BKX6 V-type ATP synthase alpha chain n=17 Tax=cellula... 246 2e-63 UniRef50_C6P430 H+transporting two-sector ATPase alpha/beta subu... 244 3e-63 UniRef50_Q83MV6 Transcription termination factor Rho n=2 Tax=Tro... 244 3e-63 UniRef50_P06576 ATP synthase subunit beta, mitochondrial n=4569 ... 244 3e-63 UniRef50_Q2NVI5 Type III secretion apparatus SpaL/InvC n=11 Tax=... 244 5e-63 UniRef50_Q9GS23 ATP synthase subunit alpha n=10 Tax=Trypanosomat... 243 6e-63 UniRef50_A3DHP0 V-type ATP synthase alpha chain n=14 Tax=cellula... 243 1e-62 UniRef50_Q9G8S6 ATP synthase F1 subunit alpha n=1 Tax=Naegleria ... 241 5e-62 UniRef50_B5Y829 ATP synthase subunit alpha n=1 Tax=Coprothermoba... 240 6e-62 UniRef50_B8H363 Flagellum-specific ATP synthase n=5 Tax=Alphapro... 240 6e-62 UniRef50_Q4S553 Chromosome 6 SCAF14737, whole genome shotgun seq... 240 6e-62 UniRef50_Q05825 ATP synthase subunit beta, mitochondrial n=3356 ... 240 7e-62 UniRef50_Q2SNG7 ATP synthase subunit alpha 1 n=10 Tax=Bacteria R... 240 8e-62 UniRef50_Q3J9F3 V-type ATP synthase alpha chain n=6 Tax=cellular... 239 1e-61 UniRef50_A6QSP8 Vacuolar ATP synthase catalytic subunit A n=1 Ta... 239 2e-61 UniRef50_Q74MJ7 V-type ATP synthase alpha chain n=1 Tax=Nanoarch... 239 2e-61 UniRef50_P46561 ATP synthase subunit beta, mitochondrial n=70 Ta... 238 3e-61 UniRef50_A3MXY7 V-type ATP synthase alpha chain n=12 Tax=Archaea... 237 6e-61 UniRef50_A3CK48 V-type ATP synthase alpha chain n=144 Tax=cellul... 237 7e-61 UniRef50_A3NN58 ATP synthase subunit alpha 2 n=51 Tax=Proteobact... 236 1e-60 UniRef50_Q9TAH9 ATP synthase subunit alpha n=1 Tax=Cafeteria roe... 234 3e-60 UniRef50_UPI00018529F8 transcription termination factor Rho n=2 ... 234 6e-60 UniRef50_A8LMQ4 Flagellum-specific ATP synthase n=32 Tax=Rhodoba... 234 6e-60 UniRef50_Q15SF7 ATP synthase subunit beta 1 n=26 Tax=cellular or... 233 9e-60 UniRef50_Q2VZN2 ATP synthase subunit beta n=40 Tax=cellular orga... 233 1e-59 UniRef50_Q184E7 V-type ATP synthase alpha chain n=74 Tax=cellula... 233 1e-59 UniRef50_C5S8P1 H+transporting two-sector ATPase alpha/beta subu... 232 2e-59 UniRef50_C1H944 Vacuolar ATP synthase catalytic subunit A n=1 Ta... 232 2e-59 UniRef50_C6HLF6 ATP synthase subunit alpha n=1 Tax=Ajellomyces c... 231 3e-59 UniRef50_D2V5T0 Mitochondrial F-1-ATPase subunit n=1 Tax=Naegler... 230 6e-59 UniRef50_Q0C5J4 Flagellar protein export ATPase FliI n=1 Tax=Hyp... 230 8e-59 UniRef50_Q724W6 ATP synthase subunit alpha 1 n=17 Tax=Listeria R... 229 1e-58 UniRef50_Q98QX5 ATP SYNTHASE ALPHA CHAIN n=2 Tax=Mycoplasma RepI... 229 1e-58 UniRef50_D2UDN1 Probable xanthomonas secretion apparatus protein... 229 1e-58 UniRef50_A1RX21 V-type ATP synthase alpha chain n=14 Tax=cellula... 229 1e-58 UniRef50_C4DDR2 Archaeal/vacuolar-type H+-ATPase subunit A n=2 T... 229 1e-58 UniRef50_A3MAR7 ATP synthase subunit beta 2 n=63 Tax=Bacteria Re... 229 1e-58 UniRef50_C0QT21 V-type ATP synthase alpha chain (V-type ATPase s... 229 2e-58 UniRef50_B9L760 ATP synthase alpha/beta family, nucleotide-bindi... 227 8e-58 UniRef50_O83541 V-type ATP synthase alpha chain 2 n=6 Tax=Bacter... 226 1e-57 UniRef50_Q71UA2 H+-ATPase beta 1 subunit (Fragment) n=14 Tax=Eum... 222 2e-56 UniRef50_P15313 V-type proton ATPase subunit B, kidney isoform n... 222 3e-56 UniRef50_Q0QEM9 ATP synthase subunit beta (Fragment) n=28 Tax=ce... 221 3e-56 UniRef50_A1ZPD5 ATP synthase F1, beta subunit n=2 Tax=Bacteroide... 221 4e-56 UniRef50_D1RAU6 Putative uncharacterized protein n=1 Tax=Parachl... 219 2e-55 UniRef50_A5EBX1 ATP synthase subunit beta 2 n=3 Tax=cellular org... 217 5e-55 UniRef50_Q6MAJ5 V-type ATP synthase alpha chain n=39 Tax=Bacteri... 216 1e-54 UniRef50_C1TMJ4 Archaeal/vacuolar-type H+-ATPase subunit A n=1 T... 216 1e-54 UniRef50_B0B8U3 Flagellum-specific ATP synthase n=15 Tax=Chlamyd... 216 2e-54 UniRef50_Q9BBC2 ATPase CF1 alpha subunit (Fragment) n=3 Tax=Dino... 215 2e-54 UniRef50_Q3J9F4 V-type ATP synthase beta chain n=44 Tax=Bacteria... 215 2e-54 UniRef50_Q9MTQ2 ATP synthase subunit beta n=2 Tax=Amphidinium Re... 214 3e-54 UniRef50_C1TMJ5 Archaeal/vacuolar-type H+-ATPase subunit B n=1 T... 214 4e-54 UniRef50_A3MU07 V-type ATP synthase beta chain n=5 Tax=Thermopro... 214 5e-54 UniRef50_C6G421 ATP synthase subunit alpha n=2 Tax=Heterocapsa t... 214 6e-54 UniRef50_Q4A6P2 ATP synthase alpha chain n=2 Tax=Mycoplasma syno... 213 8e-54 UniRef50_Q74MS5 NEQ263 n=1 Tax=Nanoarchaeum equitans RepID=Q74MS... 213 1e-53 UniRef50_Q5LD89 ATP synthase subunit beta n=30 Tax=Bacteroidetes... 213 1e-53 UniRef50_A6AXF1 VcsN2 n=15 Tax=Gammaproteobacteria RepID=A6AXF1_... 212 2e-53 UniRef50_Q43433 V-type proton ATPase subunit B 2 (Fragment) n=31... 211 4e-53 UniRef50_B7JY91 H+transporting two-sector ATPase alpha/beta subu... 211 6e-53 UniRef50_A7HDG9 V-type ATP synthase alpha chain n=2 Tax=Deltapro... 209 1e-52 UniRef50_C0QT22 V-type ATP synthase beta chain (V-type ATPase su... 209 2e-52 UniRef50_A5KSP4 Sodium-transporting two-sector ATPase n=1 Tax=ca... 209 2e-52 UniRef50_Q98QB7 ATP synthase subunit alpha 2 n=1 Tax=Mycoplasma ... 208 3e-52 UniRef50_C4ZAP4 Flagellar protein export ATPase FliI n=1 Tax=Eub... 207 6e-52 UniRef50_Q4A6P1 ATP synthase beta chain n=10 Tax=Mycoplasma RepI... 207 6e-52 UniRef50_A5IY82 ATP synthase alpha chain n=23 Tax=Mycoplasmatace... 207 7e-52 UniRef50_Q98QX4 ATP SYNTHASE BETA CHAIN n=1 Tax=Mycoplasma pulmo... 207 7e-52 UniRef50_Q874G5 Vacuolar membrane ATPase subunit a (Fragment) n=... 207 8e-52 UniRef50_Q98QB6 ATP synthase subunit beta 2 n=22 Tax=Mycoplasmat... 206 1e-51 UniRef50_D1J8A0 ATP synthase beta chain n=1 Tax=Mycoplasma homin... 206 1e-51 UniRef50_B8JE34 V-type ATP synthase beta chain n=5 Tax=Deltaprot... 205 2e-51 UniRef50_A8BYU1 Vacuolar ATP synthase catalytic subunit A n=3 Ta... 204 6e-51 UniRef50_UPI0001B4F835 V-type ATP synthase subunit B n=1 Tax=Str... 202 2e-50 UniRef50_A6LA83 V-type ATPase, subunit A n=41 Tax=Bacteria RepID... 202 3e-50 UniRef50_C4N426 ATP synthase F1 alpha subunit n=1 Tax=uncultured... 199 2e-49 UniRef50_B7QDF5 Vacuolar H+-ATPase V1 sector, subunit B, putativ... 198 3e-49 UniRef50_C4DDR1 Archaeal/vacuolar-type H+-ATPase subunit B n=1 T... 198 4e-49 UniRef50_C0QV76 V-type ATP synthase subunit A n=3 Tax=Bacteria R... 198 5e-49 UniRef50_B9L759 V-type ATP synthase beta chain n=1 Tax=Nautilia ... 197 9e-49 UniRef50_O50140 ATP synthase subunit alpha n=4 Tax=cellular orga... 196 1e-48 UniRef50_Q600H8 ATP synthase alpha chain n=4 Tax=Mycoplasma RepI... 196 1e-48 UniRef50_Q8FXF0 Flagellum-specific ATP synthase FliI n=3 Tax=Bru... 196 1e-48 UniRef50_D1J8A1 ATP synthase alpha chain n=1 Tax=Mycoplasma homi... 195 3e-48 UniRef50_C3W009 ATP synthase subunit alpha n=4 Tax=Spermatophyta... 194 4e-48 UniRef50_A0E2E9 Chromosome undetermined scaffold_75, whole genom... 192 2e-47 UniRef50_A9GHR6 ATP synthase subunit alpha n=4 Tax=cellular orga... 192 2e-47 UniRef50_Q98PM2 ATP SYNTHASE ALPHA CHAIN n=1 Tax=Mycoplasma pulm... 191 4e-47 UniRef50_B4QHN0 ATP synthase subunit alpha n=2 Tax=Eukaryota Rep... 187 6e-46 UniRef50_A0D9M8 Chromosome undetermined scaffold_42, whole genom... 186 1e-45 UniRef50_O57728 Endonuclease PI-Pho2 n=1 Tax=Pyrococcus horikosh... 186 2e-45 UniRef50_Q6KHZ3 ATP synthase alpha chain n=1 Tax=Mycoplasma mobi... 185 2e-45 UniRef50_Q9UXU7 Pab atpA intein n=9 Tax=cellular organisms RepID... 184 4e-45 UniRef50_Q97CQ0 Tvo atpA intein n=3 Tax=Archaea RepID=VATA_THEVO 182 1e-44 UniRef50_Q6L1S7 A1AO H+ ATPase subunit A n=1 Tax=Picrophilus tor... 182 2e-44 UniRef50_P17255 Endonuclease PI-SceI n=18 Tax=cellular organisms... 181 5e-44 UniRef50_A9R780 Flagellum-specific ATP synthase n=1 Tax=Yersinia... 180 8e-44 UniRef50_A3LP04 Vacuolar H+-ATPase V1 sector, subunit A n=8 Tax=... 179 1e-43 UniRef50_C5DTL5 ZYRO0C09504p n=2 Tax=Saccharomycetaceae RepID=C5... 178 3e-43 UniRef50_Q255D8 V-type ATP synthase beta chain n=52 Tax=Bacteria... 176 2e-42 UniRef50_A0D564 ATP synthase subunit alpha n=2 Tax=Paramecium te... 174 6e-42 UniRef50_C0QV77 V-type ATP synthase subunit B n=40 Tax=Bacteria ... 172 1e-41 UniRef50_B9TD12 Transcription termination factor rho, putative (... 172 2e-41 UniRef50_A5DXZ0 Vacuolar ATP synthase catalytic subunit A n=6 Ta... 169 2e-40 Sequences not found previously or not previously below threshold: >UniRef50_Q1RIJ6 Transcription termination factor n=863 Tax=cellular organisms RepID=RHO_RICBR Length = 449 Score = 451 bits (1159), Expect = e-125, Method: Composition-based stats. Identities = 283/417 (67%), Positives = 350/417 (83%), Gaps = 1/417 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +NL ELK EL E + +EN++ +RKQ+++FAILK+ + G I G+GVLE+L D Sbjct: 28 INLKELKRKLPEELQAQAEELKIENVSSLRKQELVFAILKKSVEQGGSIVGEGVLEVLPD 87 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRS + +YLAGPDDIY+SPSQIRRF LRTGDT+ G+IR PKEGERYFALLKVN+VN Sbjct: 88 GFGFLRSPEVNYLAGPDDIYISPSQIRRFGLRTGDTVEGRIRAPKEGERYFALLKVNKVN 147 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 F+ P A +++ F+NLTPL+ + +L +E + S +D + RV++L +P+G+GQR LIVAPP Sbjct: 148 FEDPSKAYHRVNFDNLTPLYPDEKLGLELEDNS-KDFSTRVIELVAPMGKGQRALIVAPP 206 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+LLQNIA +I N+P+ L+VLLIDERPEEVT+MQR V+GEVV+STFDEPASRHV Sbjct: 207 RTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPASRHV 266 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 Q+AEMVIEKAKRLVEHKKDV+IL+D+ITRLARAYNTVVP+SGKVLTGGVDANAL RPKRF Sbjct: 267 QLAEMVIEKAKRLVEHKKDVVILVDAITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF 326 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARN+E GGSLTII TALI+TGS+MDEVI+EEFKGTGN E+ L RKIA+KR++PAID Sbjct: 327 FGAARNIENGGSLTIIGTALIETGSRMDEVIFEEFKGTGNSEIVLDRKIADKRIYPAIDI 386 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 RSGTRKE+LL + L KMW+LR+II PMG +A+EFL+ KL TKTN++FFEMMK Sbjct: 387 TRSGTRKEDLLVDKIVLNKMWVLRRIIDPMGSSEAIEFLLKKLEHTKTNNEFFEMMK 443 >UniRef50_C5CGH1 Transcription termination factor Rho n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGH1_KOSOT Length = 468 Score = 447 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 220/416 (52%), Positives = 308/416 (74%), Gaps = 3/416 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +++++L P+ EL L + +M K+D+IFA+LK +S F +GVLEI Sbjct: 49 IDISQLLKMPIRELYKLARKYSITGYTQMAKKDLIFAVLKAQTESYGYFFAEGVLEITDG 108 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G+GFLR+ D++ L +DIYVS SQIRRFNL TGD ++G++R PKEGE+YFALL++ +N Sbjct: 109 GYGFLRTLDNNLLPSSNDIYVSQSQIRRFNLNTGDWVAGQVRSPKEGEKYFALLRIEAIN 168 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 A +I F+NL P++ + + +E ++ R++DL SPIG+GQRGLIVAPP Sbjct: 169 QKPVSYAEERISFQNLVPVYPDEKFILET---EPYIVSTRIIDLFSPIGKGQRGLIVAPP 225 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 KAGKT LL+ IA IA NHP+ + ++LLIDERPEEVT+++R V+A+ FD + + Sbjct: 226 KAGKTTLLKEIANGIAENHPNTIRIILLIDERPEEVTDLRRSTDAHVIAAPFDMSPDKQI 285 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 +VAE+ +E AKRLVE DV+ILLDSITRLARAYN VP SGK+L+GGVD +AL+ PK F Sbjct: 286 RVAELTLEMAKRLVEFGYDVVILLDSITRLARAYNLYVPPSGKLLSGGVDPSALYHPKHF 345 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARN+E+GGSLTII+TAL++TGSKMDEVI+EEFKGTGNMEL LSR++A KR+FPAI+ Sbjct: 346 FGAARNIEDGGSLTIISTALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINL 405 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 N SGTRKEELL E L+K+W+LR+++ + E + ++ +++K+ TK+N++F +++ Sbjct: 406 NLSGTRKEELLLPPEILRKVWVLRRMLAGISEEEGLKVIVDKMKTTKSNEEFLDLI 461 >UniRef50_B2IAB8 Transcription termination factor Rho n=6 Tax=Bacteria RepID=B2IAB8_XYLF2 Length = 564 Score = 443 bits (1139), Expect = e-123, Method: Composition-based stats. Identities = 298/418 (71%), Positives = 360/418 (86%), Gaps = 1/418 (0%) Query: 2 NLTELKNTPVSELITLGENMGL-ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +L++LK P +L+ + E + + E +AR RKQD+IFA+LK + GE +F DGVLEIL D Sbjct: 147 SLSDLKKMPAHKLLEIAEQLNIHEGVARARKQDVIFALLKVLTRHGEGVFADGVLEILPD 206 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLR+A++SYLAGPDD Y+SPSQIRRFNLRTGD +SG+IR PK+GERYFAL V+ +N Sbjct: 207 GFGFLRAAEASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTIN 266 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 + E ++NKILFENLTPL R R+ER +GSTED+T R+LDL +P G+GQR LIV+PP Sbjct: 267 GEPLEASKNKILFENLTPLFPRKRFRLERADGSTEDITGRILDLMAPQGKGQRALIVSPP 326 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 KAGKTML+Q +A +I NHP+ L+VLLIDERPEEVTEMQR V+GEV++STFDEPA+RHV Sbjct: 327 KAGKTMLMQQVATAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHV 386 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 QVAEMVIE+AKRL+EHKKDV+ILLDSITRLARAYN VVP+SGKVLTGGVDA+ALHRPKRF Sbjct: 387 QVAEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAHALHRPKRF 446 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGN ELHL+R+IAEKRV+PAID Sbjct: 447 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNCELHLNRRIAEKRVYPAIDI 506 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 NRSGTR+E+LL + LQK+WILRK++HPM EI A+EF+++K+ TK+ND+FF MKR Sbjct: 507 NRSGTRREDLLIESDLLQKIWILRKLLHPMDEIAAIEFVLDKMKNTKSNDEFFGSMKR 564 >UniRef50_P52156 Transcription termination factor rho n=224 Tax=Bacteria RepID=RHO_RHOS4 Length = 422 Score = 442 bits (1138), Expect = e-123, Method: Composition-based stats. Identities = 281/417 (67%), Positives = 354/417 (84%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +NL +LK ++L+ + E +EN MRK +++F+ILK+HA+ G ++ GDGVLE+LQD Sbjct: 5 LNLADLKAKTPADLLAMAEEWEIENAPSMRKGEMMFSILKEHAEEGYEVGGDGVLEVLQD 64 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRS +++YL GPDDIYVSP +R+F+LRTGDTI G I P+E ERYF+L +V ++N Sbjct: 65 GFGFLRSPEANYLPGPDDIYVSPEILRQFSLRTGDTIEGVIVAPRENERYFSLTRVTKIN 124 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 FD PE AR+K+ F+NLTPL+ + RL+ME + + +D +AR++DL +PIG+GQRGLIVAPP Sbjct: 125 FDDPERARHKVHFDNLTPLYPDERLKMEVDDPTMKDRSARIIDLVAPIGKGQRGLIVAPP 184 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+LLQNIA SIA NHP+C L+VLLIDERPEEVT+MQR VKGEVV+STFDEPA+RHV Sbjct: 185 RTGKTVLLQNIAHSIATNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV 244 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 VAEMVIEKAKRLVEHK+DV+ILLDSITRL RA+NTVVP+SGKVLTGGVDANAL RPKRF Sbjct: 245 AVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQRPKRF 304 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARN+EEGGSLTIIATALIDTGS+MDEVI+EEFKGTGN E+ L RK+A+KRVFPA+D Sbjct: 305 FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVFPAMDI 364 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 +SGTRKE+LL + +LQK ++LR+I++PMG DA+EFLI+KL TK+N +FF+ M Sbjct: 365 LKSGTRKEDLLVDKSDLQKTYVLRRILNPMGTTDAIEFLISKLRQTKSNAEFFDSMN 421 >UniRef50_A6DIN5 Transcription termination factor Rho n=2 Tax=Chlamydiae/Verrucomicrobia group RepID=A6DIN5_9BACT Length = 613 Score = 441 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 236/416 (56%), Positives = 318/416 (76%), Gaps = 3/416 (0%) Query: 2 NLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61 NL+E++ ++EL L + +E + + KQ +++ IL+ A ++G GVLE+ ++G Sbjct: 200 NLSEIQQKSMAELNELANALEVEGVGSIGKQQLVYEILQAQASDQGILYGGGVLEVFKEG 259 Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 +GFLRS++ SY+ P+DIY+SP Q+RRF+LRTGDT+ G +R ++ ER+FA++KV+ +N Sbjct: 260 YGFLRSSEYSYMPSPEDIYLSPKQVRRFSLRTGDTVMGAVRAAQDQERFFAMIKVDAING 319 Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 + P+ +NKI FE+LTP R+ ME + + RVLDL P+G GQRGLIVAPP+ Sbjct: 320 EDPKEKKNKIPFESLTPDFPEYRMHMET---EPTNHSMRVLDLVVPVGAGQRGLIVAPPR 376 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQ 241 GKT+L+Q+IA SIA N+PD L+VLLIDERPEEVT+M+R VKGEV++STFDEP +RHVQ Sbjct: 377 TGKTVLMQSIANSIATNNPDFHLIVLLIDERPEEVTDMKRNVKGEVISSTFDEPPTRHVQ 436 Query: 242 VAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFF 301 VAEMVIEKAKR+VEH K+V++LLDSITRLARAYNTV P SGK+L+GGVDANALH+PKRFF Sbjct: 437 VAEMVIEKAKRMVEHGKNVVVLLDSITRLARAYNTVQPHSGKILSGGVDANALHKPKRFF 496 Query: 302 GAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYN 361 GAAR ++EGGSLTI+ATAL+DTGSKMDEVI+EEFKGTGNME+ L R + +KR+FPAI+ Sbjct: 497 GAARRIQEGGSLTILATALVDTGSKMDEVIFEEFKGTGNMEICLDRGMIDKRIFPAINIE 556 Query: 362 RSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 +SG RKEELL +E + MW LR+ M + M+ ++N + TK+N +F M Sbjct: 557 KSGARKEELLLDPKEKELMWKLRRAAISMPTTEGMKIILNGVKKTKSNVEFLMTMN 612 >UniRef50_C8PNN3 Transcription termination factor Rho n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNN3_9SPIO Length = 543 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 255/417 (61%), Positives = 336/417 (80%), Gaps = 5/417 (1%) Query: 3 LTELKNTPVSELITLGENMGL--ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 + +L + L L G+ E++ M+KQ+IIF ILK H ++G IF G LEIL D Sbjct: 125 INDLTRMGMHALRDLAAQYGIPHEDMVAMKKQEIIFFILKHHTENGGIIFASGALEILPD 184 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G+GFLRS +SYL+G DDIY+SPSQIR FNL+TGDT+ G+IR PKEGER+FALL+V VN Sbjct: 185 GYGFLRSPQNSYLSGSDDIYISPSQIRLFNLKTGDTVYGQIRSPKEGERFFALLRVESVN 244 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 F+ A+++I F+NLTPL+ +L +E ++E + R++DL PIG+GQR LIVAPP Sbjct: 245 FEDVSVAQSRIPFDNLTPLYPREKLNLET---TSELYSTRIMDLFCPIGKGQRSLIVAPP 301 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+L+Q IA +I NHP+ L+VLLIDERPEEVT+M+R V GEV++STFDE A+RHV Sbjct: 302 RTGKTILMQQIANAITQNHPEVYLIVLLIDERPEEVTDMERTVHGEVISSTFDEQATRHV 361 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 QVAEMV+EKAKRLVEHKKDV+ILLDSITRLARAYN VP SGKVL+GGVD+NALH+PKRF Sbjct: 362 QVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNQTVPTSGKVLSGGVDSNALHKPKRF 421 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARN+EEGGSLTIIATALI+TGS+MDEVI+EEFKGTGNME++L R+++++R+FPAI+ Sbjct: 422 FGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNMEINLDRRLSDRRIFPAINI 481 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 +SGTRKEELL + +LQ++W+LRK+I+PM +++ M+ L++K+ +K N+ F ++M Sbjct: 482 KKSGTRKEELLINEADLQRIWLLRKVINPMDDLEIMDLLLDKMKKSKNNEVFLKLMN 538 >UniRef50_D1N6X9 Transcription termination factor Rho n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N6X9_9BACT Length = 637 Score = 437 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 243/418 (58%), Positives = 317/418 (75%), Gaps = 3/418 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +N++EL+ + EL +G +G+E + + K ++ IL+ +A+ +FG G LE+L D Sbjct: 220 LNISELQEKSMQELAVMGAELGIEGIGALDKSTLVCEILRANAEKCGQMFGSGYLEVLPD 279 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRS SYL +DIY+SPSQI+RF L+TGD I+G+IR P+E ER+FA+LKV +N Sbjct: 280 GFGFLRSPSYSYLPCSEDIYLSPSQIKRFALKTGDFIAGQIRTPREKERFFAMLKVESIN 339 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 D PE + I F +L P RL +ER D + R++DL +PIG+GQRGLIVAPP Sbjct: 340 NDSPERKKEIIPFNSLVPYFPTQRLVLER---DPADYSTRIVDLVTPIGKGQRGLIVAPP 396 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+LLQ IA SI N+P+ L++LLIDERPEEVT+M R V EVV+STFDEP RHV Sbjct: 397 RTGKTVLLQKIANSIRANNPEVKLIILLIDERPEEVTDMMRSVDAEVVSSTFDEPPERHV 456 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 QVAEMVIEKAKR+VE+K+DV+ILLDSITRLARAYNT+ P SGK+LTGGVDA ALH+PKRF Sbjct: 457 QVAEMVIEKAKRMVEYKQDVVILLDSITRLARAYNTLQPHSGKILTGGVDATALHKPKRF 516 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARN+E GSLTIIATAL++TGS+MD+VI+EEFKGTGNMELHL R ++++R++PAI+ Sbjct: 517 FGAARNIENHGSLTIIATALVETGSRMDDVIFEEFKGTGNMELHLDRNVSDRRIYPAINV 576 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 +SGTRKEELL +EL K+WILRK I+ + +AME L+ +L KTN +F ++ Sbjct: 577 EKSGTRKEELLLHPDELNKVWILRKAINGVPPAEAMELLLGRLKKVKTNIEFLLTLQP 634 >UniRef50_D1CBT1 Transcription termination factor Rho n=9 Tax=Bacteria RepID=D1CBT1_THET1 Length = 642 Score = 437 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 233/416 (56%), Positives = 313/416 (75%), Gaps = 5/416 (1%) Query: 3 LTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGF 62 EL++ + L+ LG ++ +E M K+ +I+ IL+ A + G+L+I++DGF Sbjct: 230 FAELQSMTKTNLLALGRSLEVEVSGSMTKETLIYKILEAQANRAGYLLKQGILDIIEDGF 289 Query: 63 GFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFD 122 GFLR YL PDD+YVS SQIRRF LRTGD + G++R PK+ E+Y +LL+V VN+ Sbjct: 290 GFLR--QERYLPSPDDVYVSQSQIRRFGLRTGDHVIGQVRAPKDNEKYHSLLRVEAVNYM 347 Query: 123 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKA 182 PE AR + F+ LTP+ N +L +E + + L+ R++DL +PIGRGQRGLIV+PPKA Sbjct: 348 DPEAARKRPFFDQLTPIFPNRQLVLET---TPKQLSTRLIDLVAPIGRGQRGLIVSPPKA 404 Query: 183 GKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQV 242 GKT LL++IA I +N+ D LM+LLI ERPEEVT+++R V+GEVVASTFDEP H +V Sbjct: 405 GKTTLLKDIANGITHNYDDVHLMMLLIGERPEEVTDIRRSVEGEVVASTFDEPVEDHTKV 464 Query: 243 AEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFG 302 AEM +E+AKRLVE KDV+IL+DSITRLARAYN VVPASG+ L+GG+D AL+ PKRFFG Sbjct: 465 AEMALERAKRLVECGKDVVILMDSITRLARAYNLVVPASGRTLSGGIDPVALYPPKRFFG 524 Query: 303 AARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 362 AARN++EGGSLTIIAT LIDTGS+MD+VIYEEFKGTGNMELHL RK+ E+R+FPAID R Sbjct: 525 AARNIDEGGSLTIIATCLIDTGSRMDDVIYEEFKGTGNMELHLDRKLQERRIFPAIDVQR 584 Query: 363 SGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 SGTR+EELL + +LQK+W +R+++ +G ++ E L+N+LA T+ N++F + + Sbjct: 585 SGTRREELLIPEPKLQKIWTMRRMVSMLGGLEGTELLLNRLAKTENNEEFLNTLNK 640 >UniRef50_Q9ZLS9 Transcription termination factor rho n=117 Tax=Bacteria RepID=RHO_HELPJ Length = 438 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 225/417 (53%), Positives = 316/417 (75%), Gaps = 3/417 (0%) Query: 2 NLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61 ++ +L+ P +L+ + + +EN ++QD++F ILK G I G+LEI+ DG Sbjct: 24 HIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDG 83 Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 +GFLR D S+ G +D YVSPSQIRRF LR GD ++G++R PK+ E+Y+ALLK+ +N+ Sbjct: 84 YGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINY 143 Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 + +N+ LF+NLTPL + ++++E +T R+LDL SP+G+GQR LIVAPP+ Sbjct: 144 LPSDEIKNRPLFDNLTPLFPDEQIKLE---YEPTKVTGRMLDLFSPVGKGQRALIVAPPR 200 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQ 241 GKT L++ +AQ I NHP+ L++LL+DERPEEVT+MQR VKG+V +STFD PA+ H++ Sbjct: 201 TGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIR 260 Query: 242 VAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFF 301 +AE+V+E+AKR VE KDV++LLDSITRLARAYN V P+SGKVL+GGVDANALHRPKRFF Sbjct: 261 IAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFF 320 Query: 302 GAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYN 361 GAARN+EEGGSLTIIATALI+TGS+MDEVI+EEFKGTGN E+ L+R IA++R++PA D Sbjct: 321 GAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDIL 380 Query: 362 RSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 +SGTRK+ +L ++ L K+W+LR ++ M +I+A+ F+ +K+ TK N++F +M Sbjct: 381 KSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQTKDNEEFLNLMNE 437 >UniRef50_D2R072 Transcription termination factor Rho n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R072_9PLAN Length = 518 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 239/420 (56%), Positives = 326/420 (77%), Gaps = 6/420 (1%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +++TEL+ +++LI ++ A M++QD+IF ILK+ K ++G+G LEIL D Sbjct: 100 LHITELQRMSMAQLIEEARQENVDEAAGMKRQDLIFRILKERVKISGLMYGEGTLEILPD 159 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRS D YL+ PDDIYVSPSQIRRF LRTG T+SG+IRPPKE ERYFALL+V +N Sbjct: 160 GFGFLRSPDYHYLSCPDDIYVSPSQIRRFGLRTGATVSGQIRPPKENERYFALLRVEAIN 219 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 + P +N++ F++LTPLH + R+ ME + RV+DL +PIG GQRGLIV+PP Sbjct: 220 YQDPNLTQNRVQFDDLTPLHPDKRITMEYDADE---IATRVIDLVTPIGFGQRGLIVSPP 276 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG---EVVASTFDEPAS 237 +AGKT+++Q +A+++ N P+ +++LL+DERPEEVT+M+R VKG EV++STFDEP + Sbjct: 277 RAGKTVIMQKMARAVLQNFPEAYVIMLLVDERPEEVTDMERQVKGPNCEVISSTFDEPPA 336 Query: 238 RHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRP 297 RHVQV++MV+EKAKRLVE DV+I LDSITRLARA+N+ P SGK+LTGG+DANAL +P Sbjct: 337 RHVQVSQMVLEKAKRLVECGVDVVIFLDSITRLARAWNSECPQSGKLLTGGLDANALQQP 396 Query: 298 KRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPA 357 KRFFG+AR VEEGGSLTI+ATALIDTGSKMD+VI+EEFKGTGN+E++L R++ +KR++PA Sbjct: 397 KRFFGSARKVEEGGSLTILATALIDTGSKMDDVIFEEFKGTGNLEIYLDRRLVDKRIWPA 456 Query: 358 IDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 ID RSGTR+EE+L EE +++ ++R+++ M DAM+ L+ ++A TKTN +F M Sbjct: 457 IDITRSGTRREEILMDPEEYRRVSVMRRLLSEMNPPDAMDLLVTRMAKTKTNAEFLMSMN 516 >UniRef50_A9BEQ5 Transcription termination factor Rho n=3 Tax=Bacteria RepID=A9BEQ5_PETMO Length = 441 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 227/417 (54%), Positives = 308/417 (73%), Gaps = 3/417 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +N+ +L EL L + + N ++M K ++ FAIL++ +S F +G+LE+L D Sbjct: 23 INMAKLNEMTRKELYELARKLEISNYSKMTKSELKFAILRKQTESIGYFFYEGILEVLPD 82 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G+GFLRS D+S L G DDIYVS SQIR+FNL TGD I+G+IRPPKEGER+FALL+V VN Sbjct: 83 GYGFLRSVDNSLLPGTDDIYVSQSQIRKFNLFTGDIIAGQIRPPKEGERFFALLRVEAVN 142 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 PENAR+++ FENLTP + +R+ +E N ++R++DL SPIG GQRGLIVAPP Sbjct: 143 SLPPENARDRVSFENLTPEYPKTRMVLEHKNA---PYSSRIIDLFSPIGFGQRGLIVAPP 199 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 KAGKT LL++IA SIA N+PD +LLIDERPEEVT+++ V V+A+ FD + Sbjct: 200 KAGKTTLLKDIANSIAENYPDTRRYILLIDERPEEVTDIRDTVDANVIAAPFDMDPENQI 259 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 ++AEM +E KRLVE DV++L+DS+TR+AR YN VP+SGK+L+GG+D A+ PK+F Sbjct: 260 RIAEMALEHFKRLVEFGHDVVVLVDSLTRVAREYNLYVPSSGKLLSGGLDPAAVIFPKKF 319 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAAR + EGGSLTI+ATALI+TGSKMDEVI+EEFKGTGNMEL L+R+++ +R+FPAI+ Sbjct: 320 FGAARKIREGGSLTILATALIETGSKMDEVIFEEFKGTGNMELVLAREMSNERIFPAINL 379 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 SGTRKEELL + +E++ ILRK I+ M +A+EF+++ L KTND+ E ++ Sbjct: 380 KLSGTRKEELLYSPDEMKNTIILRKFINDMSPKEALEFILSLLRKHKTNDEIMEAIE 436 >UniRef50_O83281 Transcription termination factor rho n=27 Tax=Bacteria RepID=RHO_TREPA Length = 519 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 251/417 (60%), Positives = 331/417 (79%), Gaps = 5/417 (1%) Query: 3 LTELKNTPVSELITLGENMGL--ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 + +L + L G+ E++ M+K DIIF +LK H ++G IF G LEIL D Sbjct: 100 IDDLTEMGMHALRDFAVQRGISQEDVVVMKKSDIIFHVLKNHTENGGVIFASGSLEILPD 159 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G+GFLRS +SYL G DDIYVSPSQIR FNL+TGDTI G+IR PKEGER+FA+L+V VN Sbjct: 160 GYGFLRSPQNSYLPGSDDIYVSPSQIRLFNLKTGDTIYGQIRSPKEGERFFAMLRVETVN 219 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 F++ ++++ F++LTPL+ +L +E TED++ RV++L PIG+GQR LIVAPP Sbjct: 220 FEEVAKVQDRVPFDSLTPLYPREKLNLET---RTEDISTRVMNLFCPIGKGQRALIVAPP 276 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+L+Q IA +I NHP+ L+VLLIDERPEEVT+M+R V EV++STFDE A+RHV Sbjct: 277 RTGKTILMQKIANAITQNHPEVYLIVLLIDERPEEVTDMERTVDAEVISSTFDEQATRHV 336 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 Q+AE+V+E+AKRLVEH+KDV+ILLDSITRLARAYN +P SGKVL+GGVD+NALH+PKRF Sbjct: 337 QIAEIVLERAKRLVEHRKDVVILLDSITRLARAYNQTMPTSGKVLSGGVDSNALHKPKRF 396 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 FGAARNVEEGGSLTIIATALI+TGS+MDEVI+EEFKGTGNME++L R+++++R+FPA+ Sbjct: 397 FGAARNVEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNMEINLDRRLSDRRLFPAVSI 456 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 +SGTRKEELL T+EE+Q++W+LRK+I+PM + + +E LI+K+ TK N+ F M Sbjct: 457 KKSGTRKEELLLTEEEMQRIWVLRKVINPMDDAEIVELLIDKMRKTKNNEAFLRSMN 513 >UniRef50_Q7UGV0 Probable transcription termination factor n=1 Tax=Rhodopirellula baltica RepID=Q7UGV0_RHOBA Length = 514 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 222/420 (52%), Positives = 313/420 (74%), Gaps = 7/420 (1%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +N+ +L+ EL+ L E GL+ +A + +Q+++F +LK + ++G+G LEIL D Sbjct: 94 LNINDLQKLEHDELLALAETEGLQEIAALPRQELVFRLLKARMSANGLMYGEGTLEILPD 153 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 GFGFLRSA YL+ PDDIYVSPSQIRRF L TG ++G+IRPPKE ERYFALL++ +N Sbjct: 154 GFGFLRSAQYHYLSCPDDIYVSPSQIRRFGLHTGSHVAGQIRPPKENERYFALLRIEAIN 213 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 P + + F++LTPLH +R+ E +++L+ RV+DL +PIG GQRGLIV+PP Sbjct: 214 HADPMQRQRQKPFDDLTPLHPRTRIVTE---HDSQELSTRVVDLFTPIGFGQRGLIVSPP 270 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG---EVVASTFDEPAS 237 +AGKTML+Q++A+ + N+PD ++VLLIDERPEEVT+M+R ++ EV++STFDEP + Sbjct: 271 RAGKTMLMQSLARGVLNNYPDAYVVVLLIDERPEEVTDMEREIQSPQCEVISSTFDEPPA 330 Query: 238 RHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVP-ASGKVLTGGVDANALHR 296 RH+QVA+MV+EKAKR+VE DV+I LDSITRLARA+N+ A+GK+LTGG+DA A+ + Sbjct: 331 RHIQVAQMVVEKAKRMVESGTDVVIFLDSITRLARAFNSDSDSATGKLLTGGLDAGAMQK 390 Query: 297 PKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 356 PK FG+AR VEEGGSLTI+ATAL+DTGS+MD+VI+EEFKGTGN+E+ L + + +RV+P Sbjct: 391 PKSIFGSARKVEEGGSLTILATALVDTGSRMDDVIFEEFKGTGNLEIVLDQDLVARRVWP 450 Query: 357 AIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 AID RSGTR+EE+L QEE +++ LR+ + +D+M LI ++ T+ N +F + Sbjct: 451 AIDLTRSGTRREEMLLDQEEHRRIETLRRDLAEHSPVDSMTELIKRMRKTQNNAEFLMSV 510 >UniRef50_C7PLF9 Transcription termination factor Rho n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLF9_CHIPD Length = 576 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 224/388 (57%), Positives = 297/388 (76%), Gaps = 8/388 (2%) Query: 30 RKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRF 89 K++ F I + I +GVLE++ DG+GFLRS+D +YL+ PDDIYVSPSQI+ F Sbjct: 196 NKKEPAFNI-----EFDGIIISEGVLEMMPDGYGFLRSSDYNYLSSPDDIYVSPSQIKLF 250 Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 L+TGDT+ G +RPPKEGE+YFALLKV +N PE R+++ F+ LTPL +LR+ Sbjct: 251 GLKTGDTVKGSVRPPKEGEKYFALLKVETINGKSPEEVRDRVPFDYLTPLFPFEKLRLTT 310 Query: 150 GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI 209 + + + R++DL +PIG+GQRGLIVA PK GKTMLL+ +A +IA NHP+ LMV+LI Sbjct: 311 TSN---NYSTRIMDLFTPIGKGQRGLIVAQPKVGKTMLLKEVANAIATNHPEVYLMVVLI 367 Query: 210 DERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 269 DERPEEVT+M+R VK EV+ASTFDEPA +HV+V+ + ++KAKRLVE DV+ILLDSITR Sbjct: 368 DERPEEVTDMERSVKAEVIASTFDEPAEKHVKVSAIALQKAKRLVECGHDVVILLDSITR 427 Query: 270 LARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDE 329 LARA+NTV PASGKVL+GGV+ANA+ +PK+FFGAAR +E GGSLTI+ATALIDTGSKMDE Sbjct: 428 LARAHNTVAPASGKVLSGGVEANAMQKPKQFFGAARKIENGGSLTILATALIDTGSKMDE 487 Query: 330 VIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHP 389 VI+EEFKGTGNMEL L RK+A +R+FPAID + S TR+++LL ++ L+++ ILR + Sbjct: 488 VIFEEFKGTGNMELQLDRKLANRRIFPAIDVSASSTRRDDLLLEKDILKRIHILRNHLAD 547 Query: 390 MGEIDAMEFLINKLAMTKTNDDFFEMMK 417 M ++M F++ + TK N++F M Sbjct: 548 MNTEESMHFMLQHMRGTKNNEEFLISMN 575 >UniRef50_D2QLY9 Transcription termination factor Rho n=2 Tax=Flexibacteraceae RepID=D2QLY9_9SPHI Length = 750 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 247/396 (62%), Positives = 307/396 (77%), Gaps = 9/396 (2%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG-FGFLRSADSSYLAGPDDIYVS 82 E R+R+Q + + I +GVLEI+QDG +GFLRSAD +YLA PDDIYVS Sbjct: 363 EYQNRIRRQ-----YNQHIREFDGIIDNEGVLEIMQDGGYGFLRSADYNYLASPDDIYVS 417 Query: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHAN 142 PSQI+ F L+TGDT+ G IRPPKEGE+YFALL+V+ VN E R++I FE LTPL Sbjct: 418 PSQIKLFGLKTGDTVRGAIRPPKEGEKYFALLRVSTVNGKTTEEIRDRIPFEYLTPLFPE 477 Query: 143 SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC 202 +L + + E+ ++RVLDL +PIG+GQRG+IVA PK GKT+LL+ IA +I NHP+ Sbjct: 478 EQLHL---SNRPENYSSRVLDLFAPIGKGQRGMIVAQPKTGKTVLLKEIANAITKNHPEV 534 Query: 203 VLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 L+VLLIDERPEEVT+M R V EV++STFDE A RHV+V+ MV+EKAKR+VE DV+I Sbjct: 535 YLIVLLIDERPEEVTDMARSVNAEVISSTFDEQADRHVKVSSMVLEKAKRMVECGHDVVI 594 Query: 263 LLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALID 322 LLDSITRLARAYNTVVP+SGK+L+GGVDANALHRPKRFFGAARNVE GGSLTIIATALID Sbjct: 595 LLDSITRLARAYNTVVPSSGKILSGGVDANALHRPKRFFGAARNVENGGSLTIIATALID 654 Query: 323 TGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWI 382 TGSKMDEVI+EEFKGTGNMEL L RK+A KRV+PAID SGTR+E+LL +E LQ++WI Sbjct: 655 TGSKMDEVIFEEFKGTGNMELQLDRKLANKRVYPAIDVMASGTRREDLLLDKETLQRVWI 714 Query: 383 LRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 LRK + M +++M+FL+ + T++N++F M R Sbjct: 715 LRKHMADMNPMESMDFLLGHMKGTRSNEEFLISMNR 750 >UniRef50_C2D7C6 Possible transcription termination factor Rho n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7C6_9ACTN Length = 720 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 209/411 (50%), Positives = 283/411 (68%), Gaps = 8/411 (1%) Query: 4 TELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFG 63 +L V+EL + +GLE + +RK+ +I I + A S GVL+I DG+G Sbjct: 298 EQLSTMKVAELRAKAQELGLET-SGVRKKVLIEQIYRAAAASEGFASIQGVLDIQPDGYG 356 Query: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDK 123 F+R+ +Y++G +D +V IR++ LR GD I G++ P + ++ L K+ ++N Sbjct: 357 FIRTG--NYMSGDNDAFVHQQLIRQYGLRPGDWIDGRVSPSR-NNKFPPLHKIVQINGKT 413 Query: 124 PENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAG 183 PE R + F +LTP++ + RL ME + +T R +DL +PIG+GQRGLIV+PPKAG Sbjct: 414 PEEIRKRPRFRDLTPVYPDERLIME---NGQQSITGRAIDLVAPIGKGQRGLIVSPPKAG 470 Query: 184 KTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVA 243 KT +L+ I QSI N+P+ L LL+DERPEEVT+MQR +KG VVASTFD PA H V+ Sbjct: 471 KTTILKKICQSITANNPEVHLFCLLVDERPEEVTDMQRSIKGTVVASTFDMPAENHTSVS 530 Query: 244 EMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGA 303 E+VIE AKRLVE +DV+++LDSITRLARAYN PASG+VL+GGVD+ AL+ PK+F GA Sbjct: 531 ELVIEHAKRLVELGQDVVVVLDSITRLARAYNLAQPASGRVLSGGVDSAALYPPKKFLGA 590 Query: 304 ARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRS 363 ARN+E GGSLTI+A+ALIDTGSKMDEVI+EEFKGTGNMEL L R +A++R+FPAID S Sbjct: 591 ARNIEHGGSLTILASALIDTGSKMDEVIFEEFKGTGNMELKLDRDLADRRIFPAIDPVSS 650 Query: 364 GTRKEELLTTQEELQKMWILRKIIHPMGEID-AMEFLINKLAMTKTNDDFF 413 GTR E+LL +E +W LR+++ M + A L+ L TK N+DF Sbjct: 651 GTRNEDLLIAKELQPFVWGLRRVLANMNNTERAASALVKGLKETKDNEDFL 701 >UniRef50_B5JM54 Rho termination factor, RNA-binding domain family n=2 Tax=Verrucomicrobia RepID=B5JM54_9BACT Length = 682 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 203/419 (48%), Positives = 281/419 (67%), Gaps = 2/419 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 ++LT L V + +G E + ++ I A+ K + + + G L+ D Sbjct: 264 IDLTSLYELKVEPMAAAVRELGAELEEKCSRKQAIEALYKVSREGKKVLKDTGFLDTSDD 323 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G G++ + S+Y P+ +YV S IR + L+ G + P+EGER A L++ Sbjct: 324 GHGYIVHSASNYQLKPESVYVPASLIREYGLQRGHELEVLAIAPEEGERCPAALRIVSAM 383 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGST--EDLTARVLDLASPIGRGQRGLIVA 178 PE+ FE+L P + RL +ER + T +D++ R DL +PIG GQRGLIVA Sbjct: 384 GGAPEDLAKVTPFEDLIPYYPTERLVLERPDPGTNKKDVSMRAFDLLTPIGFGQRGLIVA 443 Query: 179 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASR 238 PP+ GKT+LLQ +A SI N D L+VLLIDERPEEVT+ +R VKGEVV+STFDE + Sbjct: 444 PPRTGKTILLQGLAHSIQENWKDTHLIVLLIDERPEEVTDFRRQVKGEVVSSTFDETPTS 503 Query: 239 HVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPK 298 HV AEMV EKA+R+VE K+V+ILLDSITRLARAYN + SGK+++GG++A A+ +PK Sbjct: 504 HVHCAEMVCEKARRMVEQGKNVVILLDSITRLARAYNALASNSGKIMSGGIEATAMQKPK 563 Query: 299 RFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAI 358 RFFG+ARN+E GGSLTI+ +AL+DTGSKMDEVI+EEFKGTGNME+HL R + KRVFPAI Sbjct: 564 RFFGSARNIEGGGSLTIMGSALVDTGSKMDEVIFEEFKGTGNMEIHLDRDLINKRVFPAI 623 Query: 359 DYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 ++ RSGTRKEELL +E++K++ LR+++ + ++AME LI +L +TK N +F +K Sbjct: 624 NFERSGTRKEELLYHPQEMEKVYGLRRVMQGVPGVEAMEMLIKRLKVTKNNIEFLMSLK 682 >UniRef50_D0MEG0 Transcription termination factor Rho n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEG0_RHOM4 Length = 518 Score = 397 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 228/375 (60%), Positives = 297/375 (79%), Gaps = 3/375 (0%) Query: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102 + I GVLEI+ DG+GFLRS D +YL GPDDIYVSPSQI+RF+LR GDTI G +R Sbjct: 146 TELEGMIIKSGVLEIMPDGYGFLRSPDYNYLPGPDDIYVSPSQIKRFSLRLGDTIEGLVR 205 Query: 103 PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162 PPKEGER+FAL++V++VN PE + F+ LTPL+ ++R+E S + + R+L Sbjct: 206 PPKEGERFFALIQVHKVNGRPPEEMEERQSFDYLTPLYPTEQIRLET---SPNEYSTRIL 262 Query: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222 DL +PIG+GQRGLIVAPPK GKT+LLQ IA +I NHP+ L++LL+DERPEEVT+M+R Sbjct: 263 DLFAPIGKGQRGLIVAPPKTGKTILLQKIANAITTNHPEIYLIILLVDERPEEVTDMERN 322 Query: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282 VK EV++STFD+ RHV+VA++V+EKAKRLVE K+DV+ILLDSITRLARA+N V P++G Sbjct: 323 VKAEVISSTFDQDPERHVEVADIVLEKAKRLVEAKQDVVILLDSITRLARAHNAVTPSTG 382 Query: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 K L+GG++A AL PKRFFGAARNVEEGGSLTII TALI+TGS+MDEVI+EEFKGTGNME Sbjct: 383 KTLSGGIEAGALRGPKRFFGAARNVEEGGSLTIIGTALIETGSRMDEVIFEEFKGTGNME 442 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 L L R++A++R+FPAI +SGTR+EELL + +L ++W+LRKI+ M ++AM FL+ K Sbjct: 443 LVLDRQLADRRIFPAIHLIKSGTRREELLIPEAKLHRIWLLRKILADMDPVEAMIFLLEK 502 Query: 403 LAMTKTNDDFFEMMK 417 + T++ND+F M Sbjct: 503 MRGTRSNDEFLVTMN 517 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSG 46 M ++EL+ +SEL L +GL + +RKQD+I+ IL+ A++ Sbjct: 1 MKISELQAKKISELRELARELGLTGYSTLRKQDLIYRILEAQAEAE 46 >UniRef50_D1PY04 Transcription termination factor Rho n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PY04_9BACT Length = 666 Score = 396 bits (1017), Expect = e-109, Method: Composition-based stats. Identities = 220/374 (58%), Positives = 284/374 (75%), Gaps = 1/374 (0%) Query: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103 + I +GVLEI+ DG+GFLRS+D +YL+ PDDIYV+ QI+ +NL+TGD + +RP Sbjct: 293 DFNDIIEANGVLEIMPDGYGFLRSSDYNYLSSPDDIYVAGQQIKHYNLKTGDVVMCHVRP 352 Query: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163 P+EGE+YF L ++ +N P R++I FE+LTPL + + G+ T +++ R++D Sbjct: 353 PREGEKYFPLTSIDMINGRTPAEVRDRIPFEHLTPLFPEEKFTLC-GDSKTTNMSTRIVD 411 Query: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223 L SPIG+GQR LIVA PK GKT+L++NIA +IA NHP+ LM+LLIDERPEEVT+M R V Sbjct: 412 LFSPIGKGQRALIVAQPKTGKTILMKNIANAIAANHPEAYLMMLLIDERPEEVTDMARTV 471 Query: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283 EV+ASTFDEPA RHV++A +V+EKAKR+VE DV+I LDSITRLARAYNTV PASGK Sbjct: 472 DAEVIASTFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGK 531 Query: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 VLTGGVDANAL +PKRFFGAARN+E+GGSLTIIATALIDTGSKMDEVI+EEFKGTGNMEL Sbjct: 532 VLTGGVDANALQKPKRFFGAARNIEKGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMEL 591 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKL 403 L R ++ KR+FP+++ S TR+++LL + L +MWILRK I M I+AM + ++ Sbjct: 592 QLDRSLSNKRIFPSVNLIASSTRRDDLLQDKTTLDRMWILRKYISDMNPIEAMNTIHGRM 651 Query: 404 AMTKTNDDFFEMMK 417 T N +F M Sbjct: 652 QQTHDNAEFLLSMN 665 >UniRef50_P52153 Transcription termination factor rho n=16 Tax=Bacteria RepID=RHO_DEIRA Length = 426 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 210/417 (50%), Positives = 291/417 (69%), Gaps = 4/417 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 + EL+ + EL L +G+EN +++K + AI+++ A + G L+I D Sbjct: 11 LPFQELQEKILPELHLLAAGLGIENYRKLKKDALALAIMEKQADAEGQSLARGYLDITSD 70 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G+GFL++ + V+ I++++LRTGD + G+ R P+E ERY +L++V VN Sbjct: 71 GYGFLQADL--LDPASRSVLVTAGVIKQYHLRTGDEVIGRARKPRENERYGSLVRVEAVN 128 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 PE AR + F++LTP + +L +E + + L+ RV+DL PIGRGQR LIVAPP Sbjct: 129 GLDPEAARQRPRFDDLTPTFPDQQLVLE-DPSTDDGLSLRVVDLLVPIGRGQRALIVAPP 187 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-EVVASTFDEPASRH 239 KAGKT LL+ IA SI N+PD +MVLL+DERPEEVT+ + V+G +V+ASTFDEP H Sbjct: 188 KAGKTTLLKKIANSITKNYPDVTVMVLLVDERPEEVTDFRESVQGAQVIASTFDEPPQHH 247 Query: 240 VQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKR 299 V+VAE V E+A+R+VE V+ILLDSITRLARA N V P +G+ L+GG+D+NALH PKR Sbjct: 248 VRVAEFVHERARRIVEEGGHVVILLDSITRLARANNLVTPPTGRTLSGGLDSNALHWPKR 307 Query: 300 FFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID 359 F GAARN+ EGGSLTI+ATAL++TGS+MD+VI+EEFKGTGN EL LSR++ E+R+FPA+D Sbjct: 308 FLGAARNIREGGSLTILATALVETGSRMDDVIFEEFKGTGNAELVLSRRLEERRIFPALD 367 Query: 360 YNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 +SGTR+EELL E L+KMW+LRK+I M DAME L+ ++ T+ N +F + Sbjct: 368 ILKSGTRREELLLQPEVLKKMWLLRKVISDMDPADAMEMLLGRMGKTRNNVEFLAAL 424 >UniRef50_C2MD13 Transcription termination factor Rho n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MD13_9PORP Length = 618 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 206/376 (54%), Positives = 275/376 (73%), Gaps = 2/376 (0%) Query: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103 + G+LE+ QDG+GFLRS+D +Y PDDIYV I++++L+TGD I G IRP Sbjct: 242 DFSNILTASGLLEVAQDGYGFLRSSDYNYFPSPDDIYVPGDMIKKWHLKTGDVIEGSIRP 301 Query: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTE--DLTARV 161 PK E+YF L + VN P++ +++ F+ LTPL + ++E + R+ Sbjct: 302 PKGSEKYFLLQNILLVNGRHPKDNLDRVSFDMLTPLFPEEKFKLESQGIAAVYDKTAMRI 361 Query: 162 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR 221 +DL +PIG+GQRGLIVA PK GKTMLL++IA +I+ NHP+ +++LLIDERPEEVT+M R Sbjct: 362 VDLVTPIGKGQRGLIVAQPKTGKTMLLKDIANAISANHPEVYMIILLIDERPEEVTDMAR 421 Query: 222 LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPAS 281 V EVVASTFDEPA HV++AE+V+ KAK +VE DV+I+LDSITRLARAYNTV P S Sbjct: 422 NVNAEVVASTFDEPADHHVKLAELVLAKAKSMVESGHDVLIMLDSITRLARAYNTVQPTS 481 Query: 282 GKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNM 341 GK+L+GG++ANAL +PKRFFGAARN+E GGSLTI+ATAL +TGSKMD+VI+EEFKG GNM Sbjct: 482 GKILSGGIEANALQKPKRFFGAARNIEHGGSLTILATALTETGSKMDDVIFEEFKGAGNM 541 Query: 342 ELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLIN 401 EL L R+++ KR+FPAID S TR+++LL LQ+MWILR + M ++AMEFL Sbjct: 542 ELQLDRRLSNKRIFPAIDILASSTRRDDLLLDSTTLQRMWILRNHLSDMNTVEAMEFLKQ 601 Query: 402 KLAMTKTNDDFFEMMK 417 ++ +T+TN +F M Sbjct: 602 RIELTETNLEFLASMN 617 >UniRef50_B1ZZF9 Transcription termination factor Rho n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZZF9_OPITP Length = 448 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 190/417 (45%), Positives = 273/417 (65%), Gaps = 2/417 (0%) Query: 3 LTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGF 62 L EL +++L + MG ++ ++ ++ A+ + G +++ G Sbjct: 34 LNELYALNLADLTSFARGMGASFEGAPNRKQLLTQVITAAAEQKRPMRDRGYIDVTDRGC 93 Query: 63 GFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFD 122 F+ +Y PDD Y+ S ++ + L+ G + ++ P+ GER ++++V+ V Sbjct: 94 -FIVHEHVNYRLYPDDAYLPESLMQLYGLKRGHRVEALVQAPQAGERCPSVVRVDSVMGM 152 Query: 123 KPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKA 182 P FE L P + R+ +E +D++ R +D+ +PIG GQR LIVAPP+ Sbjct: 153 PPSEISKVTPFEELIPYYPLQRILLELEEPQ-KDVSMRAVDILTPIGFGQRALIVAPPRT 211 Query: 183 GKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQV 242 GKT+LLQNIA SI N P L++LLIDERPEEVT+ +R KGEVV+STFDE HV Sbjct: 212 GKTILLQNIANSITANSPQTKLILLLIDERPEEVTDFRRHTKGEVVSSTFDETPESHVHC 271 Query: 243 AEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFG 302 AEMVIE A+R VE + V+ILLDSITRLARAYN + GK ++GG+++NAL +PKRFFG Sbjct: 272 AEMVIENARRRVEQGEHVVILLDSITRLARAYNALAGNQGKTMSGGLESNALQKPKRFFG 331 Query: 303 AARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 362 +ARN+E GGSLTI+A+ALIDTGS+MDE+I+EEFKGTGN ELHL R + E+R+FPAI+ +R Sbjct: 332 SARNIEGGGSLTIVASALIDTGSRMDEIIFEEFKGTGNCELHLDRGLVERRIFPAINIDR 391 Query: 363 SGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419 SGTRKEEL+ EELQ+++ LR+ + +G I++ME LI +L TK+N +F + R+ Sbjct: 392 SGTRKEELIYHPEELQRIYGLRRAMQGLGPIESMEMLITRLKKTKSNAEFLLGLSRT 448 >UniRef50_C8WA24 Transcription termination factor Rho n=133 Tax=Bacteria RepID=C8WA24_ATOPD Length = 701 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 203/409 (49%), Positives = 279/409 (68%), Gaps = 7/409 (1%) Query: 6 LKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFL 65 L+ +SEL +G+E A + K D+I + A + +G+L+I +G+G++ Sbjct: 284 LQEMKLSELRAKATELGIE-YAGVHKSDLIELVYAASAAAEGFKTVEGILQISNEGYGWI 342 Query: 66 RSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPE 125 R+ +Y+ G +D +V IR LR GD++ G + P + +Y LL+V +VN + E Sbjct: 343 RTG--NYMEGDNDAFVHQQIIRNLGLRPGDSVLGMVGPARVNSKYPPLLQVTQVNGGEVE 400 Query: 126 NARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKT 185 +++ F++LTP+ N L ME G S +T R +DL +PIG+GQRGLIV+PPKAGKT Sbjct: 401 GLKDRPRFKDLTPIFPNQPLTMEHGKDS---ITGRAIDLVAPIGKGQRGLIVSPPKAGKT 457 Query: 186 MLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEM 245 +L+ I QSI N+P+ L LL+DERPEEVT+M+R +KG VVASTFD PA H V+E+ Sbjct: 458 TILKRICQSITINNPEVHLFCLLVDERPEEVTDMERSIKGTVVASTFDMPAENHTVVSEL 517 Query: 246 VIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAAR 305 VIE+AKRLVE +DV+++LDSITRLARAYN +PASG++L+GGVD+ AL+ PK+F GAAR Sbjct: 518 VIERAKRLVEMGQDVVVILDSITRLARAYNLAIPASGRILSGGVDSAALYPPKKFLGAAR 577 Query: 306 NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT 365 N+E GGSLTIIA+AL+DTGSKMDEVI+EEFKGTGNMEL L R +A++R+FPAID SGT Sbjct: 578 NIESGGSLTIIASALVDTGSKMDEVIFEEFKGTGNMELKLDRDLADRRIFPAIDPVSSGT 637 Query: 366 RKEELLTTQEELQKMWILRKIIHPMGEID-AMEFLINKLAMTKTNDDFF 413 R E+LL E +W +R+I+ + A LI+ L T N DF Sbjct: 638 RNEDLLIKPELQPMVWGVRRILAGFNNTERATTALISGLKQTDNNQDFL 686 >UniRef50_D1P9V5 Transcription termination factor Rho n=1 Tax=Prevotella copri DSM 18205 RepID=D1P9V5_9BACT Length = 743 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 214/374 (57%), Positives = 281/374 (75%), Gaps = 1/374 (0%) Query: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103 + +GVLE++ +G+GFLRS+D +YL+ PDD+YV+ S +++F L+TGD I K+RP Sbjct: 370 DFSNLVKSNGVLEVISEGYGFLRSSDYNYLSSPDDVYVASSFVKKFGLKTGDVIECKVRP 429 Query: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163 P EGE+YF L + ++N P R+++ FE+LTPL + + + G+ T +L+ R++D Sbjct: 430 PHEGEKYFPLTSIIKINGRDPSEVRDRVPFEHLTPLFPDEKFNLC-GDRRTTNLSTRIVD 488 Query: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223 L SPIG+GQR LIVA PK GKT+L+++IA +IA NHP+ LM+LLIDERPEEVT+M R V Sbjct: 489 LFSPIGKGQRALIVAQPKTGKTILMKDIANAIAANHPEAYLMMLLIDERPEEVTDMARTV 548 Query: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283 EV+ASTFDEPA RHV++A +V+EKAKR+VE DV+I LDSITRLARAYNT PASGK Sbjct: 549 NAEVIASTFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTTAPASGK 608 Query: 284 VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 VLTGGVDANAL +PKR FGAARN+E GGSLTIIATAL DTGSKMDEVI+EEFKGTGNMEL Sbjct: 609 VLTGGVDANALQKPKRLFGAARNIEGGGSLTIIATALTDTGSKMDEVIFEEFKGTGNMEL 668 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKL 403 L R ++ KR+FPA++ S TR+++LL + L +MWILRK + M I+AM + + Sbjct: 669 QLDRSLSNKRIFPAVNLISSSTRRDDLLQDKTTLDRMWILRKYLSDMNSIEAMSTIHKNM 728 Query: 404 AMTKTNDDFFEMMK 417 T+ ND+F M Sbjct: 729 QHTRNNDEFLLSMN 742 >UniRef50_D1VSG2 Transcription termination factor Rho n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSG2_9FIRM Length = 586 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 226/430 (52%), Positives = 297/430 (69%), Gaps = 25/430 (5%) Query: 4 TELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGD----------- 52 +E ++ EL T EN+ E++ +D I I + HAK + Sbjct: 154 SEDQDDKDKELYTPDENLE-EDIEDNELEDEIDKIEESHAKKFGIELDEISNNATEAVGK 212 Query: 53 --------GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPP 104 G+LE+ QDG+GFLR S++L DIYVSPSQIRRF LR GD I G +RP Sbjct: 213 MDDAKYVCGILELHQDGYGFLR--VSNFLPSEGDIYVSPSQIRRFRLRNGDKILGIVRPS 270 Query: 105 KEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDL 164 K+GE Y L+ +NEVN KP A N+ FENLTP++ +++ME +D+ RV+DL Sbjct: 271 KDGESYNGLIYINEVNDKKPNLATNRPYFENLTPIYPREKIKME---FDPKDIATRVIDL 327 Query: 165 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK 224 P+G+GQRGLIV+PPK+GKT LL+ IA+SI N+P+ L VLLIDERPEEVT+MQR VK Sbjct: 328 ICPVGKGQRGLIVSPPKSGKTTLLKKIAKSIEKNYPEIELFVLLIDERPEEVTDMQRSVK 387 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 G+VV STFDE H +VAEMV+++AKRLVE KDV+ILLDS+TRL+RAYN + P+SGK Sbjct: 388 GQVVYSTFDETPKNHTRVAEMVLDRAKRLVEQGKDVVILLDSLTRLSRAYNLITPSSGKT 447 Query: 285 LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELH 344 L+GG+D +LH+PKRFFGAARN+EEGGSLTI+ATAL++TGS+MD++I+EEFKGTGNMELH Sbjct: 448 LSGGLDPLSLHKPKRFFGAARNIEEGGSLTILATALVETGSRMDDIIFEEFKGTGNMELH 507 Query: 345 LSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 L RK++EKR+FPAID +SGTRKEELL Q+EL + +R + + E L++++ Sbjct: 508 LDRKLSEKRIFPAIDIYKSGTRKEELLLNQDELNFAFNIRNAMSYNSSNEVTEVLLDEMT 567 Query: 405 MTKTNDDFFE 414 T N F Sbjct: 568 KTINNKTFVR 577 >UniRef50_C9RLJ9 Transcription termination factor Rho n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLJ9_FIBSS Length = 689 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 215/449 (47%), Positives = 295/449 (65%), Gaps = 37/449 (8%) Query: 2 NLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61 N + + +SEL L ++ RMRKQ + + IL+ G I+ +GVLE+ G Sbjct: 243 NWLKFRKLSMSELQELAVQKEVDF-RRMRKQSLNY-ILQSLENEGNIIYTEGVLEVTPQG 300 Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 GFLR D +Y DD+YVS + IR+FNL+ GDTI G +R P++ ++YF++ +++ VNF Sbjct: 301 HGFLRMPDQNYQTSADDVYVSQNLIRKFNLKIGDTIEGLVRTPRDQDKYFSMRRIDRVNF 360 Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 ++P+ R ++ FE LTP+H ++ +E + + + R++DL SPIG+GQR +I+APP+ Sbjct: 361 EEPDKMRRRVAFEYLTPIHPEEKIHLE---WNETEYSTRIMDLFSPIGKGQRSIILAPPR 417 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEV 227 GKT+LLQN+ ++IA NHP+ +L+ LLIDERPEEVTEM+ +K EV Sbjct: 418 TGKTVLLQNVTRAIAKNHPEIILITLLIDERPEEVTEMRDIITDIKEKAAEKGIEIKAEV 477 Query: 228 VASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG 287 VASTFDEP H +VA MV+EKAKRLVE +KDV+ILLDSITR ARA N V+P SGK+L+G Sbjct: 478 VASTFDEPPEHHTRVANMVLEKAKRLVESQKDVVILLDSITRFARANNVVIPHSGKILSG 537 Query: 288 GVDANALHRPKRFFGAARNV------------------EEGGSLTIIATALIDTGSKMDE 329 GVDANA+ PK+FFGAAR + ++ GSLTII TALI+TGS+MDE Sbjct: 538 GVDANAMQFPKKFFGAARKIQDKIRTVKNEDGTISEEVQKNGSLTIIGTALIETGSRMDE 597 Query: 330 VIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHP 389 VI+EEFKGTGNMEL L R+IAEKR++PAID +SGTRKEE L T E W R+ Sbjct: 598 VIFEEFKGTGNMELVLDRRIAEKRIWPAIDVFKSGTRKEERLLTLLEQNAAWNFRRGSQN 657 Query: 390 MGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 E ME L+ ++ KTN + ++ + Sbjct: 658 ETETGIMENLLKLMSKLKTNAELLAVLSK 686 >UniRef50_Q0TNA5 Transcription termination factor Rho n=24 Tax=Bacteria RepID=Q0TNA5_CLOP1 Length = 489 Score = 380 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 212/392 (54%), Positives = 290/392 (73%), Gaps = 13/392 (3%) Query: 30 RKQDIIFAILKQHAKSGEDIFGDGVLEILQDG-FGFLRSADSSYLAGPDDIYVSPSQIRR 88 +K+ + I + G+LEIL + FGFLR +YL DDIYVSPSQIRR Sbjct: 105 KKEQLKDMISSSDSAK-------GILEILDNNNFGFLR--CRNYLTSEDDIYVSPSQIRR 155 Query: 89 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRME 148 F LRTGD + GK+R PK+GE++ ALL V VN + PE A + FE LTP++ RLR+E Sbjct: 156 FGLRTGDEVQGKVRIPKDGEKFKALLYVERVNGESPEKAVGRKKFEELTPIYPKERLRLE 215 Query: 149 RGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 NG DL++R++D+ PIG+GQRG+IVAPPKAGKT LL+ IAQ+I+ N+P+ L+VLL Sbjct: 216 TENGR--DLSSRLMDIICPIGKGQRGMIVAPPKAGKTTLLKRIAQNISKNNPEVKLIVLL 273 Query: 209 IDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 268 IDERPEEVT+M+R + GEV+ STFDE H +V+ +V+E+AKR+VE +DV+IL+DS+T Sbjct: 274 IDERPEEVTDMKRSIDGEVIYSTFDEEPQNHAKVSSIVLERAKRMVEQGRDVVILMDSLT 333 Query: 269 RLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMD 328 RL+RAYN V SG+ L+GG+D AL PK+FFGAARN+EEGGSLTI+AT+L+DTGS+MD Sbjct: 334 RLSRAYNLTVTPSGRTLSGGLDPGALIMPKKFFGAARNLEEGGSLTILATSLVDTGSRMD 393 Query: 329 EVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIH 388 ++I+EEFKGTGNME+HL RK+ E+R+FPAID +SGTRKE+LL +EE + + +R+++ Sbjct: 394 DMIFEEFKGTGNMEVHLDRKLQERRIFPAIDIYKSGTRKEDLLFNEEEREASYKIRRVLQ 453 Query: 389 PMGEIDAM-EFLINKLAMTKTNDDFFEMMKRS 419 I+ + E LIN L+ TK N +F +++ +S Sbjct: 454 KENNIEDVAEKLINLLSKTKNNKEFLQVVLKS 485 >UniRef50_C7HUP3 Transcription termination factor Rho n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HUP3_9FIRM Length = 451 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 207/453 (45%), Positives = 302/453 (66%), Gaps = 41/453 (9%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKS--------------- 45 +N+ +L + EL +G+N+ +++L+ RK +++ I + ++ S Sbjct: 3 ININDLDKLKLDELREIGKNLSIKSLSSYRKNELVEIIKEAYSNSKNFENNESSSNDLDD 62 Query: 46 -------GEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIS 98 GE +G+L++ +DGFGFLR+ Y + DDIYVSP Q++ F L+TGD I Sbjct: 63 SNENFDLGEKFNCEGLLDLHEDGFGFLRTEL--YESSNDDIYVSPKQVKMFRLKTGDFIK 120 Query: 99 GKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLT 158 G R K+ +++ L+ V++VN K +A N+ FE+LTP++ N +L++E ++ Sbjct: 121 GIARVKKDKDKFSPLIFVSDVNGLKAADAFNRSNFESLTPIYPNQKLKLETSKDK---IS 177 Query: 159 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE 218 R++D+ +PIGRGQRGLIV+ PKAGKT L+++I ++ N D ++VLLIDERPEEVT+ Sbjct: 178 QRIIDIIAPIGRGQRGLIVSQPKAGKTTLIKDIEYALEKNFDDLKILVLLIDERPEEVTD 237 Query: 219 MQRLVK-----------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 267 +R V EV ASTFD+ H+ + EMV+E+AKRLVE KDV+ILLDSI Sbjct: 238 FKRFVNQYRDKDNELTRTEVAASTFDKAPQNHIYMQEMVLERAKRLVEDNKDVVILLDSI 297 Query: 268 TRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKM 327 TRLARAYN + P SG+ L+GG+D AL PK+FFGAARN+E GGSLTIIATAL+DTGS+M Sbjct: 298 TRLARAYNIMTPQSGRTLSGGLDPLALIGPKKFFGAARNIENGGSLTIIATALVDTGSRM 357 Query: 328 DEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKII 387 D+++YEEFKGTGNMELHL RK+A++R+FPAID +S TRK+ LL + +EL+ ++ LR Sbjct: 358 DDMVYEEFKGTGNMELHLDRKLAQRRIFPAIDIEKSSTRKDNLLLSNKELEAVYKLRN-- 415 Query: 388 HPMGE-IDAMEFLINKLAMTKTNDDFFEMMKRS 419 M + +D LIN +A K+ND+F E++ ++ Sbjct: 416 SDMKDKMDFTNELINLMAKCKSNDEFVELINKT 448 >UniRef50_B1I6H8 Transcription termination factor Rho n=6 Tax=Bacteria RepID=B1I6H8_DESAP Length = 492 Score = 376 bits (966), Expect = e-103, Method: Composition-based stats. Identities = 233/378 (61%), Positives = 286/378 (75%), Gaps = 5/378 (1%) Query: 40 KQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISG 99 + G LEIL +G+GFLR S +L DDIYVS SQIR+F+LRTGD +SG Sbjct: 97 RMLPDRSRLFQAQGYLEILPEGYGFLR--PSQFLPSNDDIYVSASQIRKFDLRTGDLVSG 154 Query: 100 KIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA 159 ++RPPK+ E+Y ALL+V VN ++ A + F+ LTPL+ RL +E S + + A Sbjct: 155 QVRPPKDTEKYLALLRVETVNGEEAALAGRRRHFDELTPLYPQERLTLET---SPDRIAA 211 Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R++DL SP+G+GQRGLIVAPPKAGKT LL+ IA SI NHP+ VLM+LLIDERPEEVT++ Sbjct: 212 RIIDLISPLGKGQRGLIVAPPKAGKTTLLKEIANSITSNHPEVVLMILLIDERPEEVTDI 271 Query: 220 QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVP 279 QR VK EV+ASTFDEPA HV+V EMV+E+AKRLVEHKKDV ILLDSITRL RAYN VVP Sbjct: 272 QRSVKAEVIASTFDEPAENHVRVTEMVLERAKRLVEHKKDVAILLDSITRLGRAYNLVVP 331 Query: 280 ASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTG 339 SG+ L+GGVD ALH+PKRFFGAAR +EEGGSLTI+ATALI+TGS+MDEVI+EEFKGTG Sbjct: 332 TSGRTLSGGVDPAALHKPKRFFGAARKIEEGGSLTILATALIETGSRMDEVIFEEFKGTG 391 Query: 340 NMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 NMEL L R+I+E+R+FPAID RSGTRKEELL T +EL+ MW RK + M DAME L Sbjct: 392 NMELILDRRISERRIFPAIDVQRSGTRKEELLLTSDELELMWYFRKTTNQMSSSDAMEHL 451 Query: 400 INKLAMTKTNDDFFEMMK 417 I ++ T++N D + Sbjct: 452 IEEMRRTRSNRDLLRNFQ 469 >UniRef50_Q1AVG2 Transcription termination factor Rho n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVG2_RUBXD Length = 498 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 212/380 (55%), Positives = 285/380 (75%), Gaps = 6/380 (1%) Query: 40 KQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISG 99 ++ + E + GVL++L DGFGFLR+ S Y +D+Y+S SQI+RFNLR GD I G Sbjct: 121 QEGRERDESLVQSGVLDVLPDGFGFLRT--SGYSQSKNDVYISTSQIKRFNLRRGDYIVG 178 Query: 100 KIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA 159 +IRP + GE+Y A++++ +N + + R + F++LTPL+ RLR+E D+ Sbjct: 179 QIRPARNGEKYPAMVRIETINGREAQKGRWRPNFDDLTPLYPMERLRLE---WKPNDIAP 235 Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 RV+DL +PIG+GQRGLIV+PPKAGKT +L+ IAQSIA N+P+ L VLL DERPEEVT+ Sbjct: 236 RVIDLVAPIGKGQRGLIVSPPKAGKTTILKQIAQSIAANYPEVRLFVLLADERPEEVTDW 295 Query: 220 QRLVK-GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVV 278 +R V+ EVVASTFD+PA H+ VAE+V+E+ KRLVE +DV++LLDSITRLARAYN Sbjct: 296 ERSVREAEVVASTFDQPAENHIAVAELVLERVKRLVEEGEDVVVLLDSITRLARAYNLAA 355 Query: 279 PASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGT 338 PASG++L+GGVD+ AL+ PK+FFGAARN+E GGSLTI+A+ALIDTGS+MDEVIYEEFKGT Sbjct: 356 PASGRILSGGVDSAALYPPKKFFGAARNIENGGSLTILASALIDTGSRMDEVIYEEFKGT 415 Query: 339 GNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEF 398 GNME+HL RK+A +R++PAI+ SGTRKEELL E Q++W +R I++ + +E Sbjct: 416 GNMEIHLDRKLANRRIYPAINIEDSGTRKEELLMEPAEAQRVWQVRNILNALDTAAKIEL 475 Query: 399 LINKLAMTKTNDDFFEMMKR 418 LI KL T+TN +F ++R Sbjct: 476 LIQKLKETRTNAEFLRQLQR 495 >UniRef50_C9XS91 Transcription termination factor Rho n=16 Tax=Bacteria RepID=C9XS91_CLODC Length = 534 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 216/389 (55%), Positives = 286/389 (73%), Gaps = 6/389 (1%) Query: 29 MRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRR 88 M KQ I+ + S ED GVLEIL DGFGFLR S+YL+ D+YVSPSQIRR Sbjct: 150 MPKQVDESKIVDEFNTSKEDEVV-GVLEILPDGFGFLRG--SNYLSTEGDVYVSPSQIRR 206 Query: 89 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRME 148 FN++TGD I G R PK GE++ ALL V ++N + P+ A + FE LTP+ RL +E Sbjct: 207 FNMKTGDKIKGITRHPKSGEKFRALLYVQKINDENPDTAIQRNAFETLTPIFPEERLTLE 266 Query: 149 RGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 + R++DL SPIG+GQRGLIVAPPKAGKT+LL+++A SIA NHP+ L+VLL Sbjct: 267 TNRNE---IATRIIDLISPIGKGQRGLIVAPPKAGKTVLLKSVANSIAKNHPNVELIVLL 323 Query: 209 IDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 268 IDERPEEVT+M+ ++G+V+ STFD+ +S HV+VAEMV+ +A+RLVEH KDV+ILLDSIT Sbjct: 324 IDERPEEVTDMKESIEGDVIYSTFDQVSSHHVKVAEMVLNRAQRLVEHGKDVVILLDSIT 383 Query: 269 RLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMD 328 RLARAYN + +G+ L+GG+D ALH PK+FFGAARN+ +GGSLTI+ TAL++TGS+MD Sbjct: 384 RLARAYNLTISPTGRTLSGGIDPGALHGPKKFFGAARNIRQGGSLTILGTALVETGSRMD 443 Query: 329 EVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIH 388 +VI+EEFKGTGNMELHL RK+AEKR+FPAID +SGTR+++LL EE +W LR+ + Sbjct: 444 DVIFEEFKGTGNMELHLDRKLAEKRIFPAIDIYKSGTRRDDLLLDDEEKTALWRLRREMS 503 Query: 389 PMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 ++ + +I + TK N +F + +K Sbjct: 504 NNSVMEITDKVIELIKRTKDNKEFVKSIK 532 >UniRef50_B1R2H4 Transcription termination factor Rho n=3 Tax=Clostridiales RepID=B1R2H4_CLOBU Length = 511 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 214/390 (54%), Positives = 292/390 (74%), Gaps = 8/390 (2%) Query: 32 QDIIFAILKQHAKSGEDIFGDGVLEILQDG-FGFLRSADSSYLAGPDDIYVSPSQIRRFN 90 Q+ +L++ G+LEIL++ FGFLR +YL +DIYVSPSQIRRFN Sbjct: 124 QNEKKEVLREMINESN--SAKGILEILENNNFGFLR--CKNYLTSSEDIYVSPSQIRRFN 179 Query: 91 LRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERG 150 LRTGD + GKIR KE E++ ALL V +VN + PE A + FE LTP++ RL++E Sbjct: 180 LRTGDEVEGKIREAKESEKFKALLFVQKVNGEAPEKAIGRKSFETLTPIYPTERLKLETQ 239 Query: 151 NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 210 N DL++R++D+ P+G+GQRG+IVAPPKAGKT LL+ +AQ+I N+PD L+VLLID Sbjct: 240 NSG--DLSSRLMDIICPLGKGQRGVIVAPPKAGKTTLLKKVAQNIVKNYPDIKLIVLLID 297 Query: 211 ERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 270 ERPEEVT+M R + G+VV STFDE H +V++MV+E+AKR+VE KDV+IL+DSITRL Sbjct: 298 ERPEEVTDMIRSINGDVVYSTFDEEPQNHAKVSQMVLERAKRMVEQGKDVVILMDSITRL 357 Query: 271 ARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEV 330 +RAYN + +G+ L+GG+D AL PK+FFGAARN+EEGGSLTI+ATAL++TGS+MD++ Sbjct: 358 SRAYNLTITPTGRTLSGGLDPGALIMPKKFFGAARNIEEGGSLTILATALVETGSRMDDM 417 Query: 331 IYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390 I+EEFKGTGNME+HL R++ E+R+FPAID +SGTRKE+LL ++EEL+ + +RKI++ Sbjct: 418 IFEEFKGTGNMEVHLDRRLQERRIFPAIDVYKSGTRKEDLLLSKEELEVAFSIRKIMYKD 477 Query: 391 GEIDAM-EFLINKLAMTKTNDDFFEMMKRS 419 G D + E LIN L+ TK N++F E K++ Sbjct: 478 GNADDVTENLINMLSKTKNNEEFIETFKKN 507 Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 34/69 (49%), Gaps = 6/69 (8%) Query: 4 TELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVL---EILQD 60 + ++ +S+L + + + ++N+++ +K ++I I+ S I DGV+ I Sbjct: 4 QDYESMTLSKLKEIAKELEIKNISKYKKNELIEEIISVSPNS---IKKDGVILRENISPK 60 Query: 61 GFGFLRSAD 69 ++ +D Sbjct: 61 AVEKIQRSD 69 >UniRef50_B6WAG5 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WAG5_9FIRM Length = 449 Score = 373 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 199/450 (44%), Positives = 301/450 (66%), Gaps = 37/450 (8%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKS--------------- 45 +++T+L+ + +L +G+ + +++++ RK D+I I + K Sbjct: 3 IDITKLEGLKLDKLREIGKELSIKSVSSYRKNDLIEIIKNTYDKESLDDKNHSDEGYDQN 62 Query: 46 -----GEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK 100 GE +G+L++ +DGFGFLR+ Y + DDIYVSP Q++ F L+TGD I G Sbjct: 63 DNFDLGEKFNCEGLLDLHEDGFGFLRTEL--YESSNDDIYVSPKQVKMFRLKTGDFIKGI 120 Query: 101 IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR 160 R K+ +++ L+ V++VN K +A N+ FE+LTP++ N RL++E S ++++ R Sbjct: 121 ARVKKDKDKFSPLIFVSDVNGLKAADAFNRSNFESLTPIYPNQRLKLET---SKDNISQR 177 Query: 161 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ 220 ++D+ +PIGRGQRGLIV+ PKAGKT L+++I ++ N D ++VLLIDERPEEVT+ + Sbjct: 178 IIDIIAPIGRGQRGLIVSQPKAGKTTLIKDIEYALEKNFDDLKILVLLIDERPEEVTDFK 237 Query: 221 RLVK-----------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 269 R V EV ASTFD+ H+ + EMV+E+AKRLVE KDV+ILLDSITR Sbjct: 238 RFVNQYRDKDNELTRTEVAASTFDKAPQNHIYMQEMVLERAKRLVEDNKDVVILLDSITR 297 Query: 270 LARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDE 329 LARAYN + P SG+ L+GG+D AL PK+FFGAARN+E GGSLTIIATAL+DTGS+MD+ Sbjct: 298 LARAYNIMTPQSGRTLSGGLDPLALVGPKKFFGAARNIEGGGSLTIIATALVDTGSRMDD 357 Query: 330 VIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHP 389 ++YEEFKGTGNMELHL R +++KR+FPAID +S TRK+ LL +++E+ ++ +R Sbjct: 358 MVYEEFKGTGNMELHLDRNLSQKRIFPAIDIEKSSTRKDNLLLSEKEIDAVYKIRNS-SM 416 Query: 390 MGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419 + + + LIN + ++N++F +++ ++ Sbjct: 417 KDKSEFTKELINLMGKCQSNEEFVDIINKT 446 >UniRef50_A9KHD0 Transcription termination factor Rho n=13 Tax=Clostridiales RepID=A9KHD0_CLOPH Length = 650 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 204/399 (51%), Positives = 286/399 (71%), Gaps = 10/399 (2%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSP 83 L++ +Q+ I + SGE +G+LE+L DG+GF+R ++L G +D+YVSP Sbjct: 257 RFLSQANQQEEKLPIDMEQLDSGETK--EGILEVLSDGYGFIR--CDNFLPGENDVYVSP 312 Query: 84 SQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANS 143 +QIRRFNL+TGD I G R + E++ ALL + +N P A + FE+LTP+ N Sbjct: 313 AQIRRFNLKTGDIIVGNTRIRNQNEKFSALLYIKLINGLHPSEAVKRKKFEDLTPIFPNE 372 Query: 144 RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 203 R+ +E + R++DL SPIG+GQRG+IV+ PK GKT LL+ +A++I NHP+ Sbjct: 373 RIHLETPGC---QVAMRMVDLISPIGKGQRGMIVSQPKTGKTTLLKQVAKAITRNHPEMH 429 Query: 204 LMVLLIDERPEEVTEMQRLVKG---EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260 L++LLIDERPEEVT+++ ++G EV+ STFDE H +V+EMVIE+AKRLVEHKKDV Sbjct: 430 LIILLIDERPEEVTDIKESIEGGNVEVIYSTFDELPENHKRVSEMVIERAKRLVEHKKDV 489 Query: 261 IILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 +ILLDSITRLARAYN V ASG+ L+GG+D ALH PK+FFGAARN+ EGGSLTI+ATAL Sbjct: 490 VILLDSITRLARAYNLTVQASGRTLSGGLDPAALHMPKKFFGAARNMREGGSLTILATAL 549 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 ++TGS+MD+V++EEFKGTGNMEL L R ++EKR+FPAID +S TR+++LL E++ Sbjct: 550 VETGSRMDDVVFEEFKGTGNMELVLDRNLSEKRIFPAIDLPKSSTRRDDLLLNSAEVEAN 609 Query: 381 WILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419 +++RK ++ + DA+E +I TK N +F EM+K++ Sbjct: 610 YLMRKALNGLKSEDAVERIIQMFVNTKNNAEFVEMIKKT 648 >UniRef50_P52157 Transcription termination factor rho n=260 Tax=cellular organisms RepID=RHO_STRLI Length = 707 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 213/379 (56%), Positives = 288/379 (75%), Gaps = 9/379 (2%) Query: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103 + I G+L+IL D + F+R+ S YL GP+D+YVS +Q+R+ LR GD ++G +R Sbjct: 327 EDDVLIPVAGILDIL-DNYAFIRT--SGYLPGPNDVYVSLAQVRKNGLRKGDHLTGAVRQ 383 Query: 104 PKEGER---YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR 160 PKEGER + AL++++ VN PE+ R + F LTPL+ RLR+E G LT R Sbjct: 384 PKEGERREKFNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPG---VLTTR 440 Query: 161 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ 220 ++DL +PIG+GQRGLIVAPPK GKTM++Q IA +I +N+P+C LMV+L+DERPEEVT+MQ Sbjct: 441 IIDLVAPIGKGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQ 500 Query: 221 RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA 280 R VKGEV++STFD PA H VAE+ IE+AKRLVE DV++LLDSITRL RAYN PA Sbjct: 501 RSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPA 560 Query: 281 SGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGN 340 SG++L+GGVD+ AL+ PKRFFGAARN+E+GGSLTI+ATAL+DTGS+MDEVI+EEFKGTGN Sbjct: 561 SGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGN 620 Query: 341 MELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLI 400 EL L RK+A+KR+FPA+D + SGTRKEE+L +EL W LR+++H + + A+E L+ Sbjct: 621 AELKLDRKLADKRIFPAVDVDASGTRKEEILLGSDELAITWKLRRVLHALDQQQAIELLL 680 Query: 401 NKLAMTKTNDDFFEMMKRS 419 +K+ TK+N +F ++++ Sbjct: 681 DKMKQTKSNAEFLIQIQKT 699 >UniRef50_A7BDQ9 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDQ9_9ACTO Length = 616 Score = 365 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 207/379 (54%), Positives = 290/379 (76%), Gaps = 10/379 (2%) Query: 45 SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPP 104 G+L+I Q+ F+R+ S YL GP+D+YV+ +RR+ LR GD ++G +R P Sbjct: 240 EDNLAPIAGILDI-QENHAFVRT--SGYLPGPNDVYVTLGNVRRWGLRAGDAVAGAVRLP 296 Query: 105 KEGER----YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR 160 +EGER Y AL++V+ VN E A+ + F LTP++ + +LRME S + T R Sbjct: 297 REGERQRQKYNALVRVDSVNGMTIEQAQARREFGKLTPVYPSEQLRMET---SPKAYTPR 353 Query: 161 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ 220 V+DL +P+G+GQRGLIV+PPKAGKTM++Q +A++I N+P+ LMV+L+DERPEEVT+M+ Sbjct: 354 VIDLVAPVGKGQRGLIVSPPKAGKTMVIQQMAKAIELNNPEVHLMVVLVDERPEEVTDMR 413 Query: 221 RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA 280 +VKGEV+ASTFD PAS H VAE+ IE+AKRLVE +DV++LLDS+TRL+RAYN PA Sbjct: 414 SIVKGEVIASTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSLTRLSRAYNLAAPA 473 Query: 281 SGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGN 340 SG++L+GGVDA+AL+ PK+FFGAARN+ EGGSLTIIA+AL++TGSKMDEVI+EEFKGTGN Sbjct: 474 SGRILSGGVDASALYPPKKFFGAARNISEGGSLTIIASALVETGSKMDEVIFEEFKGTGN 533 Query: 341 MELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLI 400 MEL LSR++AE+R+FPAID N SGTR+EELL EEL+ MW LR+++ + + +E ++ Sbjct: 534 MELRLSRQLAERRIFPAIDLNASGTRREELLFKPEELRIMWRLRRVLGTLDQQQGLELVL 593 Query: 401 NKLAMTKTNDDFFEMMKRS 419 +KL T++N +F +++++ Sbjct: 594 DKLKETQSNAEFLMLIQKT 612 >UniRef50_B2UR37 Transcription termination factor Rho n=2 Tax=Verrucomicrobiaceae RepID=B2UR37_AKKM8 Length = 474 Score = 364 bits (934), Expect = 4e-99, Method: Composition-based stats. Identities = 182/413 (44%), Positives = 275/413 (66%), Gaps = 3/413 (0%) Query: 1 MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD 60 +++ EL+ P+++L + E + + N A + K ++F + KQ G ++ GV+E +D Sbjct: 60 IDINELRKRPLNDLQEMAEGLPIRNAASLTKSQLVFELGKQLLAKGHEVVVSGVMEQAKD 119 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 + LR S+ PDDIY+ + I+ +LR G I ++R + ++Y + V V Sbjct: 120 NYAMLRDPVKSFRTSPDDIYLGGNLIKPLHLRVGQQIKVRLRKLRPHDKYLSAASVISVE 179 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 E+ R + FE LTPL RL +E ++ + RVLDL +P G+GQRGLIVAPP Sbjct: 180 DIPAEDYRARSDFERLTPLFPKERLLLENKGVNSAAM--RVLDLMTPFGKGQRGLIVAPP 237 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV 240 + GKT+LL+ IA+SI N+P+ L+VLL+DERPEEVT+ + V V ASTFDEP+ RH Sbjct: 238 RGGKTVLLKTIARSIRANYPEVELIVLLLDERPEEVTDFEETVDAPVFASTFDEPSRRHA 297 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF 300 QV+++VIE+AKRLVE +DV+ILLDS+TRLAR YN G++++GG+ +NAL +P++F Sbjct: 298 QVSDLVIERAKRLVEMGRDVVILLDSLTRLARGYN-ANQTGGRIMSGGLGSNALEKPRKF 356 Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 F AARNVEEGGSLTIIAT L+DT S+MDEVI+EEFKGTGN+E+ L R+++E+R++PAI Sbjct: 357 FSAARNVEEGGSLTIIATCLVDTESRMDEVIFEEFKGTGNLEIRLDRELSERRIYPAISL 416 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFF 413 ++SGTR ++ L ++E K+ LR+ + + ++ L+ ++ T+ N + Sbjct: 417 SQSGTRNDDRLYNEQEFVKIMQLRRQLAMKPGWEGLQTLLQNISKTQNNAELL 469 >UniRef50_C5RGE3 Transcription termination factor Rho n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGE3_CLOCL Length = 483 Score = 359 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 204/369 (55%), Positives = 275/369 (74%), Gaps = 7/369 (1%) Query: 51 GDGVLEILQ-DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER 109 GVLEI + + FGFLR+ ++++ +DIYVSPSQIRRFNLRTGD + GK+R PKEGE+ Sbjct: 117 AKGVLEINESNNFGFLRAG--NFVSTSEDIYVSPSQIRRFNLRTGDEVEGKVREPKEGEK 174 Query: 110 YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIG 169 + AL V +VN + PE A +I FE L P++ +RL++E + L+ R++D PIG Sbjct: 175 FKALRFVEKVNGENPEKAIGRIPFEKLIPIYPENRLKLETKSSE---LSTRLMDFICPIG 231 Query: 170 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVA 229 +GQRGLIVAPPKAGKT LL+N+A SI NHP+ L+V+LIDERPEEVTEMQR +KGEVV Sbjct: 232 KGQRGLIVAPPKAGKTTLLKNVANSITENHPEVKLIVVLIDERPEEVTEMQRSIKGEVVY 291 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGV 289 STFD+ H+++A MV+E+AKR+VE K DV+ILLDS+TRL RA N V +G+ L+GG+ Sbjct: 292 STFDQETESHIRIANMVLERAKRMVEQKLDVVILLDSLTRLTRANNLRVDPTGRTLSGGL 351 Query: 290 DANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 349 D ALH PKR FGAARNVE GGSLTI++T L++TGS+MD+VI+EEFKGTGNME+HL RK+ Sbjct: 352 DPAALHLPKRLFGAARNVENGGSLTILSTVLVETGSRMDDVIFEEFKGTGNMEVHLDRKL 411 Query: 350 AEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM-EFLINKLAMTKT 408 E+R+FPAID +SGTRKEE L + +E +R+ ++ A+ E ++N L+ T++ Sbjct: 412 QERRIFPAIDIYKSGTRKEEYLLSTDERNAAINVRRKLYNENNPQAVTEMVLNILSETES 471 Query: 409 NDDFFEMMK 417 ND+ + + Sbjct: 472 NDELIKRLN 480 >UniRef50_P45835 Transcription termination factor rho n=20 Tax=Actinomycetales RepID=RHO_MYCLE Length = 610 Score = 357 bits (915), Expect = 6e-97, Method: Composition-based stats. Identities = 205/375 (54%), Positives = 277/375 (73%), Gaps = 12/375 (3%) Query: 51 GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGE-- 108 G+L++L D + F+R+ S YLAGP D+YVS S +R+ LR GD ++G +R P+EGE Sbjct: 234 VAGILDVL-DNYAFVRT--SGYLAGPHDVYVSMSMVRKNGLRRGDAVTGAVRVPREGEQG 290 Query: 109 ----RYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDL 164 ++ L++++ +N E+A+ + F LTPL+ N RLR+E + + LT RV+DL Sbjct: 291 HQRQKFNPLVRLDSINGGSVEDAKKRPEFGKLTPLYPNQRLRLET---TPDRLTTRVIDL 347 Query: 165 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK 224 PIG+GQR LIV+PPKAGKT +LQ+IA +I N+ +C LMV+L+DERPEEVT+MQR VK Sbjct: 348 IMPIGKGQRALIVSPPKAGKTTILQDIANAITRNNLECHLMVVLVDERPEEVTDMQRSVK 407 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 GEV+ASTFD P S H VAE+ IE+AKRLVE KDV++LLDSITRL RAYN PASG++ Sbjct: 408 GEVIASTFDRPPSDHTSVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNASPASGRI 467 Query: 285 LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELH 344 L+GGVD+ AL+ PKRF GAARN+EEGGSLTIIATA+++TGS D VI+EEFKGTGN EL Sbjct: 468 LSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSTGDMVIFEEFKGTGNAELK 527 Query: 345 LSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 L RKIAE+RVFPA+D N SGTRK+ELL + +E + LR+++ + A++ L+++L Sbjct: 528 LDRKIAERRVFPAVDVNPSGTRKDELLLSPDEFGIVHKLRRVLSGLDSHQAIDLLMSQLR 587 Query: 405 MTKTNDDFFEMMKRS 419 TKTN +F + ++ Sbjct: 588 KTKTNYEFLVQVSKT 602 >UniRef50_A5TX87 Transcription termination factor Rho n=11 Tax=Bacteria RepID=A5TX87_FUSNP Length = 413 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 179/415 (43%), Positives = 268/415 (64%), Gaps = 11/415 (2%) Query: 6 LKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFL 65 L + +L + + M +E +K ++ ++ + G+L+ +GFGFL Sbjct: 4 LNKLLLKDLQEIAKVMEIEVSVGQKKDELK-KLISHSLEENNTELAYGILDTAPEGFGFL 62 Query: 66 RSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPE 125 + +IY+S SQI+RF LR GD + G++R P E+ FA+ +V + N + Sbjct: 63 KETTL-----GKNIYMSASQIKRFKLRRGDQVLGEVRKPIGEEKNFAIRRVLKANDNDLA 117 Query: 126 NARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKT 185 ++I +E L P + + ++ ++++ R+LDL SPIG+GQR LI+APPKAGKT Sbjct: 118 ALESRIPYEELIPTYPTEQFKL---GIEQDNISGRILDLISPIGKGQRALIIAPPKAGKT 174 Query: 186 MLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-EVVASTFDEPASRHVQVAE 244 + +IA ++ D + +LLIDERPEEVT+++ V+G V ASTFD+ H++V E Sbjct: 175 TFISSIANALIEGQKDSEVWILLIDERPEEVTDIKENVEGATVFASTFDDDPKNHIKVTE 234 Query: 245 MVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAA 304 +IEKAK VE ++V+ILLDS+TRLARAYN V+P+SGK+L+GG+D AL+ PK FFGAA Sbjct: 235 EIIEKAKMKVEDGENVVILLDSLTRLARAYNIVMPSSGKLLSGGIDPTALYHPKNFFGAA 294 Query: 305 RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 RN++ GGSLTIIAT L+DTGSKMDEVIYEEFK TGN +++L R++AE R+FPAID +SG Sbjct: 295 RNIKNGGSLTIIATILVDTGSKMDEVIYEEFKSTGNCDIYLDRQLAEFRIFPAIDITKSG 354 Query: 365 TRKEELLTTQEELQKMWILRKIIHPMGE-IDAMEFLINKLAMTKTNDDFFEMMKR 418 TRKEELL + ++ ++W LR++++ + A LI + T+ ND+ + + Sbjct: 355 TRKEELLLDKNQIDEIWNLRRLLNDYDNKVSATSALIKAIKTTRDNDELLAQLPK 409 >UniRef50_C2CU97 Transcription termination factor Rho n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CU97_GARVA Length = 695 Score = 352 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 203/380 (53%), Positives = 279/380 (73%), Gaps = 12/380 (3%) Query: 45 SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPP 104 E + G++++L + + F+R+ S YL GP+D+YVS SQI+++ LR GD + G IR P Sbjct: 307 KEELVPVAGIVDVL-ESYAFVRT--SGYLPGPNDVYVSMSQIKKYGLRKGDAVQGSIRAP 363 Query: 105 KEGER------YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLT 158 +EG+R + L V+ +N E+A+N+ F LTPL+ RL+ E Sbjct: 364 REGDRRNQRQKFVPLQSVDSINGMSVEDAQNRPQFAKLTPLYPQERLKQETTPNRML--- 420 Query: 159 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE 218 R++DL +PIG+GQRGLIV+PPKAGKT+ LQNIA +IA N+P+ LMV+L+DERPEEVT+ Sbjct: 421 GRIIDLVAPIGKGQRGLIVSPPKAGKTITLQNIANAIAVNNPEVHLMVVLVDERPEEVTD 480 Query: 219 MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVV 278 M+R V+GEV++STFD PAS H VAE+ IE+AKRLVE +DV++LLDS+TRLARAYN Sbjct: 481 MERTVQGEVISSTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAA 540 Query: 279 PASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGT 338 PASG++L+GGVDA AL+ PK+FFGAARN+E GGSLTII++AL++TGSKMDEVI+EEFKGT Sbjct: 541 PASGRILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGT 600 Query: 339 GNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEF 398 GNMEL LSR +A+KR+FPA+D N SGTR+EEL+T +EL ++ LR++ + A + Sbjct: 601 GNMELRLSRDLADKRLFPAVDINSSGTRREELITPAQELPIIYRLRRLFGGLEPEQAYQT 660 Query: 399 LINKLAMTKTNDDFFEMMKR 418 L+ +L T +N DF + + Sbjct: 661 LVPRLKKTASNRDFLAAIVQ 680 >UniRef50_C4GAL5 Putative uncharacterized protein n=2 Tax=Bacteria RepID=C4GAL5_9FIRM Length = 679 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 205/395 (51%), Positives = 284/395 (71%), Gaps = 9/395 (2%) Query: 28 RMRKQDIIFAILKQHAKSGEDI-FGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQI 86 R ++++ A+ Q A+ D DG+LEI+ DG+GFL + ++L G DD YV+PSQI Sbjct: 286 RPHREEVSDAVSPQLAEQMSDASEADGILEIMPDGYGFLHT--DNFLTGEDDAYVAPSQI 343 Query: 87 RRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLR 146 RRF ++TGD + G + +++ ALL++N +N PE R + FENLTP+ RLR Sbjct: 344 RRFAMKTGDRVEGLKKRNNPTDKFAALLRINSINGRNPEELRGRQSFENLTPIFPRERLR 403 Query: 147 MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV 206 +ER S + +RV+DL +PIG+GQRGLIV+PPKAGKT LL+ +A+S+ NHP+ +M+ Sbjct: 404 LERKGSS---VASRVIDLIAPIGKGQRGLIVSPPKAGKTTLLKEVAKSVQENHPEMHMMI 460 Query: 207 LLIDERPEEVTEMQRLVKG---EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 LLIDERPEEVT+M+ + G E++ STFD+ H +V+EMVIE+AKRLVE +DVIIL Sbjct: 461 LLIDERPEEVTDMKETIVGDNVEIIYSTFDQMPDHHTKVSEMVIERAKRLVEQGEDVIIL 520 Query: 264 LDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDT 323 LDSITRLARAYN V +SG++L+GG+D AL+ PKRFFGAARN+ EGGSLT++ATAL+DT Sbjct: 521 LDSITRLARAYNLTVTSSGRILSGGLDTAALYMPKRFFGAARNMREGGSLTVLATALVDT 580 Query: 324 GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWIL 383 GS+MD+V+YEEFKGTGNMEL L R+++E+R+FPA+D SGTR+E+LL +E++ I+ Sbjct: 581 GSRMDDVVYEEFKGTGNMELILDRRLSERRIFPAVDIVASGTRREDLLLDADEMEAARIM 640 Query: 384 RKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 + I+ + E L+N A TK N DF + R Sbjct: 641 HRGINGRRAEENTEDLLNMFAHTKDNKDFIRQLLR 675 >UniRef50_C4G1L0 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G1L0_ABIDE Length = 597 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 192/370 (51%), Positives = 267/370 (72%), Gaps = 7/370 (1%) Query: 52 DGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYF 111 G+LE++ +GFGF+R +YL G +D+YVSP+ IRRFNL+TGD I G R E++ Sbjct: 223 TGILEVMPEGFGFIR--CDNYLPGENDVYVSPAHIRRFNLKTGDIIVGNTRVKSNTEKFA 280 Query: 112 ALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG 171 A+L + VN + + + FE+LTP+ N R+R+E + ++ R++DL +PIG+G Sbjct: 281 AILYIRTVNGKYIKESLERPKFEDLTPIFPNRRIRLETPGENV--ISMRMVDLIAPIGKG 338 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE---VV 228 QRG++V+ PKAGKT LL+ IA++I N+P+ L++LLIDERPEEVT+M+ + GE ++ Sbjct: 339 QRGMLVSQPKAGKTTLLKQIARAITENNPEMHLIILLIDERPEEVTDMKDSIMGEKVEII 398 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGG 288 STFDE H +V+EMVIE+AKRLVE+KKDVIILLDSITRLARAYN V SG+ L+GG Sbjct: 399 YSTFDEAPENHKRVSEMVIERAKRLVEYKKDVIILLDSITRLARAYNLTVSPSGRTLSGG 458 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 +D ALH PKRFFGAARN+ EGGSLTI+ATAL+DTGS+MD+V++EEFKGTGNMEL L R Sbjct: 459 LDPAALHMPKRFFGAARNMREGGSLTILATALVDTGSRMDDVVFEEFKGTGNMELVLDRS 518 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKT 408 ++EKR+FPAID +SGTR+++LL TQ E I+++ + D +E +I +T Sbjct: 519 LSEKRIFPAIDLAKSGTRRDDLLFTQSEADANDIIKRTLSARNVEDGVENIIKIFKTFET 578 Query: 409 NDDFFEMMKR 418 N++ + + Sbjct: 579 NEEAVSYINK 588 >UniRef50_C7M177 Transcription termination factor Rho n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M177_ACIFD Length = 594 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 207/378 (54%), Positives = 277/378 (73%), Gaps = 7/378 (1%) Query: 46 GEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPK 105 E I GVL++ +G+GFLR+ + L D YV S +R+F LR GD I G+ R Sbjct: 217 QELIEAVGVLDLRDEGYGFLRA--NGRLTSSRDTYVPASLVRKFGLRKGDQIVGQARASS 274 Query: 106 EGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLA 165 + E++ AL++V V E+AR + FE+LTPL + RL +E +LT R++DL Sbjct: 275 QNEKFPALVRVERVFDMTVEDARRRPRFEDLTPLFPDERLVLENAE-DPLELTTRIMDLV 333 Query: 166 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG 225 +PIG+GQRGLIV+PPKAGKT +++ IA +I N+P+ VL VLL+DERPEEVT+++R VKG Sbjct: 334 APIGKGQRGLIVSPPKAGKTTVMKQIAHAIERNNPEVVLFVLLVDERPEEVTDIRRSVKG 393 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 EV+ASTFD PA H QVAE+VIE+AKRLVE DV+I+LD ITRLARAYN PASG+++ Sbjct: 394 EVIASTFDRPAEEHTQVAELVIERAKRLVELGHDVVIILDGITRLARAYNLAQPASGRIM 453 Query: 286 TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 +GGVD+ AL+ PK+FFGAARNVEEGGSLTI+ATAL++TGSKMDEVI+EEFKGTGNMEL L Sbjct: 454 SGGVDSGALYPPKKFFGAARNVEEGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRL 513 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMG----EIDAMEFLIN 401 R++AE+R+FPAID N S TR EELL T++EL ++W LR+++ + +E LI+ Sbjct: 514 DRRLAERRLFPAIDVNASSTRHEELLFTRDELAQVWKLRRVLGAISQEGTPAAGLELLID 573 Query: 402 KLAMTKTNDDFFEMMKRS 419 K+ T++N +F + RS Sbjct: 574 KIRSTRSNAEFLAEIARS 591 >UniRef50_B8DWV6 Transcription termination factor Rho n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=B8DWV6_BIFA0 Length = 676 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 205/379 (54%), Positives = 280/379 (73%), Gaps = 12/379 (3%) Query: 46 GEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPK 105 + + G++++L D + F+R+ S YL GP+DIYVS QI+++ LR GD + G R P Sbjct: 292 EDLVEVGGIVDVL-DSYAFIRT--SGYLPGPNDIYVSMGQIKKYGLRKGDAVRGYTRAPH 348 Query: 106 EGER------YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA 159 EGER + L + +N E A+++ F LTPL+ + RLRME Sbjct: 349 EGERRNQRQKFMPLQSITLINGLSVEEAQDRPNFSKLTPLYPDERLRMETTPNRII---G 405 Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R++D+ SPIG+GQRGLIV+PPKAGKT+ LQNIA +IA N+P+ LMV+L+DERPEEVT+M Sbjct: 406 RLIDIVSPIGKGQRGLIVSPPKAGKTITLQNIANAIAVNNPEVHLMVVLVDERPEEVTDM 465 Query: 220 QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVP 279 +R VKGE+++STFD PAS H VAE+ IE+AKRLVE +DV++LLDS+TRLARAYN P Sbjct: 466 ERTVKGEIISSTFDRPASDHTIVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAP 525 Query: 280 ASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTG 339 ASG++L+GGVDA AL+ PK+FFGAARN+E GGSLTII++AL++TGSKMDEVI+EEFKGTG Sbjct: 526 ASGRILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTG 585 Query: 340 NMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 NMEL LSR++A+KR+FPA+D N SGTR+EEL+T +EL ++ LR+++ + A + L Sbjct: 586 NMELRLSRELADKRLFPAVDINASGTRREELITNPQELPVLYSLRRLLGGLEPEQAYQTL 645 Query: 400 INKLAMTKTNDDFFEMMKR 418 + +L T TN DFF+ + + Sbjct: 646 VPRLKKTMTNADFFKAIVQ 664 >UniRef50_C2KVL4 Transcription termination factor Rho n=1 Tax=Oribacterium sinus F0268 RepID=C2KVL4_9FIRM Length = 564 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 196/386 (50%), Positives = 262/386 (67%), Gaps = 7/386 (1%) Query: 36 FAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGD 95 + ++ + + G+LE++ DG+GF+RS +++ G D+YV+ IRRF+L+TGD Sbjct: 159 EEVRREGPRDTDAKEAHGILEVMADGYGFIRS--ENFMPGEQDVYVNSLMIRRFHLKTGD 216 Query: 96 TISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTE 155 I G + ERY ALL + VN + F+ LTP+ + R+ MER G Sbjct: 217 MIYGYAKSRNPQERYNALLYIETVNDLPVSAIFRRPDFDKLTPIFPDERIHMERE-GKRV 275 Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 + RVLDL +PIG+GQRG+IV+PPKAGKT LL+ IAQSI N PD LM+LLIDERPEE Sbjct: 276 PTSLRVLDLLAPIGKGQRGMIVSPPKAGKTTLLKQIAQSILKNQPDMTLMILLIDERPEE 335 Query: 216 VTEMQRLVKG---EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 VT+M V G +V+ STFDE H +VAEM IE+ KRLVE +DV ILLDSITRLAR Sbjct: 336 VTDMMEEVVGDKVQVIYSTFDELPEHHKRVAEMTIERGKRLVEQGQDVCILLDSITRLAR 395 Query: 273 AYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIY 332 AYN +VP+SGKVL+GG+D+ ALH PKRFFGAARN+ EGGSLTI+ATAL+DTGS+MD+VIY Sbjct: 396 AYNLIVPSSGKVLSGGMDSAALHMPKRFFGAARNIREGGSLTILATALVDTGSRMDDVIY 455 Query: 333 EEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE 392 EEFKGTGNMEL L+R++ E+R+FPAID +SGTR+++LL + E ++ + + + Sbjct: 456 EEFKGTGNMELVLNRELQERRIFPAIDILKSGTRRDDLLLSPLEKDAADLIHRELATEKK 515 Query: 393 IDAMEFLINKLAMTKTNDDFFEMMKR 418 +E ++ T N E + R Sbjct: 516 TV-VEETLSLFDRTVNNISLCETLVR 540 >UniRef50_A6CBM4 Transcription termination factor Rho n=3 Tax=Planctomycetaceae RepID=A6CBM4_9PLAN Length = 543 Score = 333 bits (854), Expect = 7e-90, Method: Composition-based stats. Identities = 168/377 (44%), Positives = 248/377 (65%), Gaps = 4/377 (1%) Query: 40 KQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISG 99 +GVLE+ +GF+R S+Y A D +VS S I + NLR G I G Sbjct: 167 NTPVDENISGTIEGVLELHPKAYGFIRDPKSNYKAQDSDAFVSSSLIEKHNLREGILIRG 226 Query: 100 KIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA 159 ++ P G+ L + ++ E F+ LTP++ ++++E G +T Sbjct: 227 EVGPGTRGQ-GPRLKSIETIDGRTVEEYMQIKSFDELTPINPFEQIKLETG---PMPITM 282 Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R++D+ +PIG+GQR L+VAPP+ GKTMLLQ+IA++++ NHP+ LMVLLIDERPEEVTEM Sbjct: 283 RIMDMLTPIGKGQRALVVAPPRTGKTMLLQDIAEAVSTNHPEIRLMVLLIDERPEEVTEM 342 Query: 220 QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVP 279 QR +KGEV++S+ D HV+ ++++ E+ KRL E +D ILLDSITR ARA+N V Sbjct: 343 QRSIKGEVISSSMDRDVESHVRTSQLIFERGKRLAEAGEDAFILLDSITRTARAFNKWVG 402 Query: 280 ASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTG 339 +G+ ++GG+D A+ PK+ FG AR +EGGSLT++ TALIDTGS+MDEVI++EFKGTG Sbjct: 403 NTGRTMSGGLDVKAMDIPKKMFGTARRFDEGGSLTVLGTALIDTGSRMDEVIFQEFKGTG 462 Query: 340 NMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 NME+ LSR+++++R+FPAID SGTR+EE + E L+ + +LR+ + + ++AME L Sbjct: 463 NMEMVLSRELSDRRIFPAIDITLSGTRREEKILAPEVLEGVTMLRRSLISLNPVEAMEQL 522 Query: 400 INKLAMTKTNDDFFEMM 416 + L +N +F E + Sbjct: 523 SSTLKKFPSNKEFLEKI 539 >UniRef50_D2QWP2 Transcription termination factor Rho n=3 Tax=Planctomycetaceae RepID=D2QWP2_9PLAN Length = 488 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 174/377 (46%), Positives = 254/377 (67%), Gaps = 4/377 (1%) Query: 43 AKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102 K G G+LE+ +G+GFLRS D++Y D +V + I +++LR G I G+++ Sbjct: 113 VKEMVLEAGYGLLEMHPNGYGFLRSPDNNYSRERSDPFVPGTMIEKYSLRQGVMIRGQVQ 172 Query: 103 PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVL 162 P + G + L +V +V P++ F+ LTP++ + R+E G + L+ RV+ Sbjct: 173 PGR-GHQGPRLREVTDVEGMPPDDYIKVKAFDQLTPINPDRWFRLETG---PQPLSTRVM 228 Query: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 222 DL +P+GRGQR LIVAPP++GKT+L+Q I+ +A N+PD +LLIDERPEEVT+M+R Sbjct: 229 DLLTPLGRGQRALIVAPPRSGKTILMQQISAGVAANYPDVKQFILLIDERPEEVTDMRRN 288 Query: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282 VKGEV AS+ D HV++++++IE+ KR+ E +DV +LLDSITRLARA+N V G Sbjct: 289 VKGEVCASSLDNDIESHVRLSQLIIERCKRMAEMGQDVFLLLDSITRLARAFNKYVGDKG 348 Query: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 ++GG++ A+ PK+ F AR EEGGSLTI+ TALI+T S+MD+ I++EFKGTGNME Sbjct: 349 GTMSGGLNIKAMDIPKKLFATARAFEEGGSLTIVGTALIETNSRMDDAIFQEFKGTGNME 408 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 L L RK+AE+RV+PAID +SGTR+EELL E L + +LR+ + M +DAME L + Sbjct: 409 LVLDRKLAERRVWPAIDVTQSGTRREELLLEPEALHAVTMLRRTLSSMHPVDAMEQLTKQ 468 Query: 403 LAMTKTNDDFFEMMKRS 419 L KTN +F +++ + Sbjct: 469 LGRFKTNAEFIKLISSA 485 >UniRef50_B1ZX59 H+transporting two-sector ATPase alpha/beta subunit central region n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZX59_OPITP Length = 412 Score = 327 bits (837), Expect = 7e-88, Method: Composition-based stats. Identities = 169/374 (45%), Positives = 237/374 (63%), Gaps = 6/374 (1%) Query: 47 EDIFGDGVLEI--LQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPP 104 E I +GVL+I + G G L P D +V IRRF L+ G I G PP Sbjct: 43 ETIQVEGVLDIDLQRGGNGQLIDISRGGKRRPTDPFVPKELIRRFKLKQGSMIGGTAFPP 102 Query: 105 KEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDL 164 + + V+ E R K F LT + N L+ME +G T R +DL Sbjct: 103 DGRFPNPKMRFIETVDGIPLEERRGKFEFTTLTTISPNQHLKMEMKDGRM---TTRAVDL 159 Query: 165 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK 224 PIG+G RGLIVAPP+ GKT LL+++A + N+P+C +M+LL+DERPEEVT+ +R V Sbjct: 160 FCPIGKGTRGLIVAPPRTGKTTLLRDMALGVLENNPECFVMILLVDERPEEVTDFKRSVP 219 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 EV AS+ DE H+++A++ IE+AKRLVE +DV++ LDSITRLARA+NT SG+ Sbjct: 220 AEVWASSNDEQIENHLRIADLCIERAKRLVEVGRDVVLFLDSITRLARAHNT-ARNSGRT 278 Query: 285 LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELH 344 +GG+D AL +P++ F +AR EE GSLTIIA+ L++TGS+MD+VI++EFKGTGNMEL Sbjct: 279 GSGGLDVRALEKPRQLFASARKTEEAGSLTIIASVLVETGSRMDDVIFQEFKGTGNMELV 338 Query: 345 LSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 L RK AE R++PAI+ SGTRKEELL + L+ + R+ + ++ E +I +L+ Sbjct: 339 LDRKCAEMRLWPAINVAASGTRKEELLIDAKTLEGIHFFRRALVQQKIEESTETMIARLS 398 Query: 405 MTKTNDDFFEMMKR 418 TKTN +F ++++R Sbjct: 399 KTKTNAEFLKLIQR 412 >UniRef50_C0ACT9 H+transporting two-sector ATPase alpha/beta subunit central region n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ACT9_9BACT Length = 416 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 166/372 (44%), Positives = 244/372 (65%), Gaps = 6/372 (1%) Query: 49 IFGDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKE 106 + GV++I + G G L P D +V IRRF +R G ++G +PP+ Sbjct: 49 VPVSGVIDIDTGKGGNGQLLDLARYGKRRPTDAFVPKELIRRFKIRQGSFVTGTAQPPEG 108 Query: 107 GERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAS 166 + + V+ E R KI F LT + + +L+ME +G LT R +DL Sbjct: 109 RFPNPKMKFIESVDGLTIEERRAKIEFTQLTTISPDQQLKMETKDGR---LTTRAVDLFC 165 Query: 167 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE 226 P+G+G RGLIVAPP+ GKT LL+++A + NHP+C +M+LL+DERPEEVT+ +R V E Sbjct: 166 PVGKGTRGLIVAPPRTGKTTLLRDMALGVLENHPECHVMILLVDERPEEVTDFKRSVPAE 225 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT 286 V AS+ DE H+++A++ IE+A+RLVE KDV++ LDS+TRLARA+NT SG+ + Sbjct: 226 VWASSNDENVESHIRIADLCIERARRLVEAGKDVVLFLDSLTRLARAHNT-QRNSGRTGS 284 Query: 287 GGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 GG+D AL +P++ F +ARN E+GGSLTI+A+ LI+TGS+MD+VI++EFKGTGNMEL L Sbjct: 285 GGLDVRALEKPRQLFASARNTEDGGSLTIVASILIETGSRMDDVIFQEFKGTGNMELVLD 344 Query: 347 RKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMT 406 RK AE R++PA++ SGTRKEELL + ++L + R+ + +A E +I +L+ T Sbjct: 345 RKCAEMRLWPAMNVASSGTRKEELLISADKLDGIHFFRRALVSQRIEEATETMIARLSKT 404 Query: 407 KTNDDFFEMMKR 418 KTN++F +++ R Sbjct: 405 KTNEEFLKLIAR 416 >UniRef50_C1A5H8 Transcription termination factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5H8_GEMAT Length = 737 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 174/369 (47%), Positives = 249/369 (67%), Gaps = 8/369 (2%) Query: 53 GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFA 112 G + +DG GFLR ++SYL P D ++ P+ +R LR GD + + ++ + Sbjct: 372 GWFDPSRDG-GFLRRPENSYLPDPTDPFMPPALVRLHQLRRGDRLE--VTYGRDHRGRYL 428 Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGST--EDLTARVLDLASPIGR 170 +++V +N P + F L + + +L +E G + +LT R +DL +PIG Sbjct: 429 VIEVQTLNDGSPVVLEKRPDFNTLVASYPDRKLTLETGRPAKTGPELTRRAIDLIAPIGY 488 Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVAS 230 GQR LIVAP +AGKT LLQ I + ++ NHP+ VL+VLL+DERPEEV+EM GEVVAS Sbjct: 489 GQRALIVAPARAGKTTLLQAIVEGVSINHPEAVLLVLLVDERPEEVSEMITWGYGEVVAS 548 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVD 290 +FD P RHV+VAEM +E+A+RLVE KDV+I+LDSITRLARA+NTV +G+ ++GG+D Sbjct: 549 SFDMPPKRHVEVAEMTLERARRLVEQGKDVVIVLDSITRLARAHNTVDRGTGRTMSGGLD 608 Query: 291 ANALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSR 347 A A+ +PK FFG+AR + GGSLTIIATAL++TGS+MD+VI+EEFKGTGN E+ L R Sbjct: 609 ATAMQKPKAFFGSARMIAPQHGGGSLTIIATALVETGSRMDDVIFEEFKGTGNCEIKLDR 668 Query: 348 KIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK 407 +A++R+FPA D SGTR+EE L ++L+K+ +LR+ +H + ME+LI ++A T Sbjct: 669 SLADRRIFPAFDIATSGTRREEKLYRPDQLEKVHLLRRGLHQLPPQAGMEWLIKRIAATT 728 Query: 408 TNDDFFEMM 416 ND + + Sbjct: 729 NNDSLLDGL 737 >UniRef50_B2UQ10 Transcription termination factor Rho n=2 Tax=Bacteria RepID=B2UQ10_AKKM8 Length = 659 Score = 314 bits (805), Expect = 4e-84, Method: Composition-based stats. Identities = 177/373 (47%), Positives = 241/373 (64%), Gaps = 8/373 (2%) Query: 48 DIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEG 107 DG+LEI GFGFLR D+ + A + +YV IRRF LR + G+ Sbjct: 291 PEPVDGLLEITNKGFGFLRKPDNDFDAFAEAVYVPQDMIRRFGLRPAVWVHGQA---CRH 347 Query: 108 ERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASP 167 +R L ++ VN PE AR FE L ++ N R+ E E T R LDL +P Sbjct: 348 DRGILLTEIASVNGVAPERARKNPHFEELKAVNPNKRISFET---RPERYTTRTLDLIAP 404 Query: 168 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD-CVLMVLLIDERPEEVTEMQRLVKG- 225 IGRGQRGLIV+PP+AGKT LLQ++A++I N+ D LMVLL+DERPEEVTE +R + G Sbjct: 405 IGRGQRGLIVSPPRAGKTTLLQHMAEAILENYRDSIHLMVLLVDERPEEVTEFKRSLPGA 464 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 EV AS+ D H ++AE+ IE+AKRLVE + V +L+DSITRLARAYN SG+ + Sbjct: 465 EVYASSNDGRVRDHCRMAELCIERAKRLVEAGQHVFLLMDSITRLARAYNNADKGSGRTM 524 Query: 286 TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 +GG+DA AL P+R F AARN + GSLTIIATAL++T S+MD++I++EFKGTGNMEL L Sbjct: 525 SGGIDARALEMPRRLFAAARNTRQAGSLTIIATALVETNSRMDDLIFQEFKGTGNMELVL 584 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 +R+IAE+ +FPA+D +SGTR+EEL+ + L KM ++R+ + ++AME + L Sbjct: 585 NRRIAEQYIFPAVDILKSGTRREELIMPEAWLYKMNLIRRALAGHKPVEAMERFLFFLNK 644 Query: 406 TKTNDDFFEMMKR 418 +N +K+ Sbjct: 645 YPSNTQMLLDLKQ 657 >UniRef50_Q1D9H4 Transcription termination factor Rho n=5 Tax=Myxococcaceae RepID=Q1D9H4_MYXXD Length = 566 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 185/367 (50%), Positives = 250/367 (68%), Gaps = 7/367 (1%) Query: 51 GDGVLEILQDG-FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER 109 +GVL+ G FLR + LA PDD + + +++ LR G I+ + Sbjct: 206 VEGVLDTEAKGPNAFLRQLKRNLLAAPDDPELPKNLVQKLRLRQGQYITA---FAQMRGH 262 Query: 110 YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIG 169 + KV+ V+ E A F +LT + RL++E G+ RVLDL SPIG Sbjct: 263 KGVIQKVDTVDGRPLEGAPRLPHFADLTSVDPTERLKLENGHKEMV---TRVLDLISPIG 319 Query: 170 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVA 229 +GQR LIVAPPK GKT++LQ IAQ+I NHP+C +MV+LIDERPEEVT+M+R +K EV+A Sbjct: 320 KGQRALIVAPPKTGKTIMLQRIAQAILSNHPECHVMVVLIDERPEEVTDMRRGIKAEVLA 379 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGV 289 S+ D P + H++VAE+ +E+A+RLVE KDV++LLDSITRLARA+N V SG+ +TGGV Sbjct: 380 SSSDRPTADHLKVAELALERARRLVESGKDVVVLLDSITRLARAFNKEVDNSGRTMTGGV 439 Query: 290 DANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 349 D+ AL RPKR FGAAR EE G+LTII TALIDTGS+MDEVI+EEFKGTGN E+ L R + Sbjct: 440 DSRALERPKRLFGAARATEEAGTLTIIGTALIDTGSRMDEVIFEEFKGTGNSEVTLDRLL 499 Query: 350 AEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 AEKRVFPA++ +SGTRKEE L T E +K+ LR+++ + ++AME L+ +L+ N Sbjct: 500 AEKRVFPAVNIAQSGTRKEEKLFTLREYEKVKKLRQMLFSVKPVEAMEALVKRLSRYTYN 559 Query: 410 DDFFEMM 416 D+F + + Sbjct: 560 DEFLDEL 566 >UniRef50_Q9FC33 Putative transcription terminator factor n=2 Tax=Streptomyces RepID=Q9FC33_STRCO Length = 415 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 182/370 (49%), Positives = 241/370 (65%), Gaps = 12/370 (3%) Query: 50 FGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER 109 GVL+I G G LR + P D +SP+ IRR LR GD + G + Sbjct: 54 IASGVLDIETGGKGRLRG--RNLQPEPADPALSPALIRRHGLRRGDLVEGVCGDRR---- 107 Query: 110 YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIG 169 L V VN P + R++ F +LTPLH + RLR+E L RV+DL +P+G Sbjct: 108 --TLTDVVRVNGRTP-DRRSRPHFADLTPLHPHERLRLEHPAAG---LAGRVVDLLAPVG 161 Query: 170 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVA 229 +GQRGLIVAPPK GKT+LLQ A ++A NHP+ LMV+L+DERPEEVT+M+R V+GEV + Sbjct: 162 KGQRGLIVAPPKTGKTVLLQQFAAAVAGNHPEARLMVVLLDERPEEVTDMRRSVRGEVYS 221 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGV 289 STFD A +H+ +AE+VIE+AKRLVE +DV+ILLDS+TRL RA+N + G+ L+GGV Sbjct: 222 STFDRSARQHIALAELVIERAKRLVEAGEDVVILLDSLTRLCRAHNNAASSGGRTLSGGV 281 Query: 290 DANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 349 DA AL PKRFFGAAR EEGGSLTI+ATAL++TGS+ D+ +EE K TGNMEL LSR+ Sbjct: 282 DAGALLGPKRFFGAARKAEEGGSLTILATALVETGSRADDFYFEELKSTGNMELRLSREP 341 Query: 350 AEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 A +RVFPA++ SGTR+EELL + E + LR+ + +E L+ +L T N Sbjct: 342 ASRRVFPAVEPVGSGTRREELLLSGAETTALRGLRRALVARDGQSGLETLLERLRRTPDN 401 Query: 410 DDFFEMMKRS 419 F ++ + Sbjct: 402 ATFLRQVQPT 411 >UniRef50_C0QKE9 Rho1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKE9_DESAH Length = 355 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 157/358 (43%), Positives = 232/358 (64%), Gaps = 4/358 (1%) Query: 48 DIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEG 107 G LEI+ GFGFLRS + +Y P+D YVS I RF+LR G I G+ Sbjct: 1 MEPIQGYLEIMDRGFGFLRSIEKNYQPEPEDPYVSIPLINRFDLREGSFIVGEGESKGAK 60 Query: 108 ERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASP 167 + AL++V+ VN + L + T ++ R + +G +D T + LDL P Sbjct: 61 NKNLALIRVHTVNGLSLDEYTKISLLQEQTSINPMERYTICQG---PDDTTGKALDLIVP 117 Query: 168 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK-GE 226 IG+GQRGLI++PPK+GKT +L+++A SI NHP + VLL+DERPEEVT+ +R ++ + Sbjct: 118 IGKGQRGLIISPPKSGKTTILRHMANSIILNHPKSKVFVLLVDERPEEVTDFRRGLREAQ 177 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT 286 V S+ D+ S H+++ + + A R E +D ++ +DS+TR+ RA+N + GK +T Sbjct: 178 VFYSSADQQISHHMRMTRLAMHTAIRCAETGQDAVVFIDSLTRMTRAFNIETNSHGKTMT 237 Query: 287 GGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 GG+ ANA+ P++ FGAARN+E GGSLTI+AT L+DTGS+MD++I++EFKGTGNM+L LS Sbjct: 238 GGLGANAMAFPRKIFGAARNLESGGSLTILATILVDTGSRMDDIIFQEFKGTGNMDLMLS 297 Query: 347 RKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 R AE+RV+PAI+ N+SGTRKE+LL +E ++ LR+ + + E+ AM+ I L Sbjct: 298 RACAEQRVWPAININQSGTRKEDLLLDDQEYEETIRLRRELSGLDEVTAMQRFIEYLG 355 >UniRef50_B4CU50 Transcription termination factor Rho n=3 Tax=Verrucomicrobia RepID=B4CU50_9BACT Length = 592 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 173/375 (46%), Positives = 244/375 (65%), Gaps = 7/375 (1%) Query: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103 + E +G++E+ GFGFLR + P D++V+P R +NLR G + G+ R Sbjct: 223 REDEIGEAEGIVEVSGKGFGFLRDPKRGFAQHPADVFVTPELCRAYNLRDGQWVKGQTR- 281 Query: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLD 163 +G R L K+ +N D + + + F+ LT + +R+E E T RV+D Sbjct: 282 --KGNRGPQLFKIQTINGDDADKSAHLPSFDELTVISPEKFIRLETV---PERFTTRVVD 336 Query: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 223 L PIGRGQRGLIVAPP+ GKT LLQ+IA+++ NHPD L++LL+DERPEEVTEM+R + Sbjct: 337 LMCPIGRGQRGLIVAPPRTGKTTLLQHIAEAVVKNHPDIKLIILLVDERPEEVTEMKRTL 396 Query: 224 KG-EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282 EV+AS+ D H ++A++ IE+AKRLVE KDV ILLDSITR+ RA+N G Sbjct: 397 PTAEVMASSNDSDVKSHTRIAQLAIERAKRLVESGKDVFILLDSITRVGRAFNNATGGGG 456 Query: 283 KVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 + +GG+D AL P+R F AARN EE GSLTIIATALI+TGS MD+ I++EFKGTGNME Sbjct: 457 RTGSGGLDNRALEIPRRIFAAARNTEEAGSLTIIATALIETGSLMDDRIFQEFKGTGNME 516 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 L L RKI+++R++PA+D +SGTR+EELL ++ +L K+ ++R+ + I+A+E L+ Sbjct: 517 LVLDRKISDQRIYPAVDIFQSGTRREELLLSETDLHKIAVIRRGLAGHKPIEAIERLLFF 576 Query: 403 LAMTKTNDDFFEMMK 417 + TN + Sbjct: 577 VKKFPTNAQMLAGIP 591 >UniRef50_Q2S040 Transcription termination factor rho n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S040_SALRD Length = 373 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 156/360 (43%), Positives = 229/360 (63%), Gaps = 5/360 (1%) Query: 57 ILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKV 116 I + +GF+R DD ++ P I +FNLR G I G ++P ++G + + Sbjct: 16 IGEKKYGFMRELRPDLPKDEDDPFMPPPLIGKFNLRDGVVIEGDLKPGRKGG--MQVGWI 73 Query: 117 NEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLI 176 + V PE F+ ++ + +L + G + RVLDL +P+G+GQR LI Sbjct: 74 DSVMGLPPEEWAQLKDFDQGASVYPDEKLDLITGTDDE---SMRVLDLVAPLGKGQRALI 130 Query: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPA 236 V+PP+AGKT+LL++IA + NHP+ L+ LL+DERPEEVT+ +R + +V AS+ D Sbjct: 131 VSPPRAGKTVLLKDIAAGVTENHPEVELVSLLVDERPEEVTDFRRTTEAQVFASSNDRGE 190 Query: 237 SRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHR 296 HV+V+ + +E AKRLVE KDV++LLDS+TRL R +N V SG+ L+GG+DA AL Sbjct: 191 DNHVRVSTLAMEHAKRLVETGKDVVVLLDSLTRLGRTFNLWVDGSGRTLSGGLDAEALKV 250 Query: 297 PKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 356 P++ FG+ARN+E GGSLTIIATAL+DTGS+MDEVI+EEFKGTGN E+ L R++A+KR+FP Sbjct: 251 PRQIFGSARNIEGGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSEIVLDREMADKRIFP 310 Query: 357 AIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 A++ SGTR EE L + +K L + ++ I+AM+ L+ L + +N + Sbjct: 311 AVNLRESGTRNEERLLGEVRRKKHNQLFRALNSRAPIEAMQALLRHLRNSPSNAHLLNEL 370 >UniRef50_P35381 ATP synthase subunit alpha, mitochondrial n=46 Tax=cellular organisms RepID=ATPA_DROME Length = 552 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 64/416 (15%), Positives = 137/416 (32%), Gaps = 48/416 (11%) Query: 6 LKNTPVSELITLGENMGL-ENLARMRKQDIIFAILKQHAKSGEDIFGDGV----LEILQD 60 L P ++L G + + + +AR ++ + A F G+ L + D Sbjct: 59 LGVAPKADLEETGRVLSIGDGIAR------VYGLNNIQADEM-VEFSSGLKGMALNLEPD 111 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G + + + D + + + + ++ GD + G++ ++ Sbjct: 112 NVGVVVFGNDKLIKQGDIVKRTGAIV---DVPVGDELLGRVVDALGN----------AID 158 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 N +++ P + + +D PIGRGQR LI+ Sbjct: 159 GKGAINTKDRFRVGIKAP-----GIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDR 213 Query: 181 KAGKTMLLQNIAQSIAYNH------PDCVLMVLLIDERPEEV-------TEMQRLVKGEV 227 + GKT L + + + + + I ++ V T+ + + Sbjct: 214 QTGKTALAIDTIINQKRFNEAQDESKKLYCIYVAIGQKRSTVAQIVKRLTDSGAMGYSVI 273 Query: 228 VASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG 287 V++T + A + + K +I+ D +++ A AY + + Sbjct: 274 VSATASDAAPLQYLAPYSGCAMGEYFRDKGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 333 Query: 288 -GVDANALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 + + R A + GGSLT + G + I + ++ Sbjct: 334 EAYPGDVFYLHSRLLERAAKMSPAMGGGSLTALPVIETQAG-DVSAYIPTNVISITDGQI 392 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 L ++ K + PAI+ S +R T+ Q ++ + E+ A Sbjct: 393 FLETELFYKGIRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQF 448 >UniRef50_B2A3G4 ATP synthase subunit alpha n=4 Tax=Bacteria RepID=ATPA_NATTJ Length = 508 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 68/395 (17%), Positives = 137/395 (34%), Gaps = 46/395 (11%) Query: 17 LGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGP 76 + GLEN+ + + +I+G L + +D G + + S++ Sbjct: 38 IARVHGLENVMA-----------NELVEFPGEIYGM-ALNLEEDNVGCVLLGEYSHIKEG 85 Query: 77 DDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENL 136 D + + I + GD + G++ P +P + + I + Sbjct: 86 DQVKRTGRIIE---VPVGDDLVGRVVNPV----------------GEPRDGKGPIEATDF 126 Query: 137 TPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 195 P+ + ++R + +D PIGRGQR LI+ GK+ + + + Sbjct: 127 RPVETRAPGVIDRKPVEEPLQTGLKAIDSMIPIGRGQRELIIGDRGTGKSAIGIDTILNQ 186 Query: 196 AYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIE 248 D + + I ++ V ++ + VVA+T DEPA Sbjct: 187 K--DSDVYCIYVAIGQKKSTVAQVVDVLERHGAMDYTTVVAATADEPAPLLYLAPYAGCS 244 Query: 249 KAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV 307 ++ + K V+++ D +++ A +Y + + + + R A + Sbjct: 245 MGEKFMHEGKHVLVVYDDLSKHAASYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKL 304 Query: 308 E---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 GGSLT + G + I + +++L + PA+D S Sbjct: 305 NDENGGGSLTALPIIETQAG-DVSAYIPTNVISITDGQIYLISDLFHAGQRPAVDVGISV 363 Query: 365 TRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 +R + Q LR + E++A Sbjct: 364 SRVGGSAQLKGMKQVSGTLRLDLAQYRELEAFAQF 398 >UniRef50_C0QAK1 FliI n=9 Tax=root RepID=C0QAK1_DESAH Length = 451 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 91/406 (22%), Positives = 170/406 (41%), Gaps = 18/406 (4%) Query: 23 LENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVS 82 +E MR + I ++ A+ G G L +++ + A+ + + Sbjct: 18 VETCKTMRPEGRITKVVGLIAEGDGMGLGIGSLCAIRNDYNREIKAEVIGFRDDKVLLMP 77 Query: 83 PSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHAN 142 +R + G I P L +V + P + + KI F + PL+ N Sbjct: 78 YGDLR--GISPGSRIIPLEDTPAVAVGDAFLGRVIDGMG-APLDGKGKIPFTHKYPLYGN 134 Query: 143 SRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD 201 MER D+ ++ P+GRGQR I+A GK++L+ + + + Sbjct: 135 PINPMERKTIKEPLDVGICAINTMIPLGRGQRVAIMAGSGVGKSVLMGMMTKHTTAD--- 191 Query: 202 CVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV 254 V+++ LI ER EV + + + + VVA+T D P ++ A + A+ Sbjct: 192 -VIILGLIGERGREVKDFVSDTLGKEGMERSVVVAATSDSPPLVRMRGAYLATTLAEYFR 250 Query: 255 EHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSL 313 + K+V++++DSITR A + V A+G+ + G + + A +E GGS+ Sbjct: 251 DQGKNVLLIMDSITRYAMSSRDVGLAAGEPPTSRGYTPSFFVQIPVLLERAGYIEGGGSI 310 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTT 373 T I T L++ G M++ + + + + + LSR +A K +PAID S +R ++ Sbjct: 311 TGIYTVLVE-GDDMNDPVGDTVRSIVDGHIVLSRDLANKGHYPAIDVLASVSRVMRDVSQ 369 Query: 374 QEELQKMWILRKIIHPMGEIDAMEFL-INKLAMTKTNDDFFEMMKR 418 E ++ +I + M + D+ +M + Sbjct: 370 PEHMELRKRAVDVIAAHRGAEDMISIGAYVDGSDARIDEAKRLMPK 415 >UniRef50_P74857 Probable secretion system apparatus ATP synthase ssaN n=63 Tax=Gammaproteobacteria RepID=SSAN_SALTY Length = 433 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 77/335 (22%), Positives = 138/335 (41%), Gaps = 33/335 (9%) Query: 84 SQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANS 143 + RR + G+ + G++ F +P + R Sbjct: 84 ALRRRHQVPVGEALLGRVIDG----------------FGRPLDGRELPDVCWKDYDAMPP 127 Query: 144 RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 203 + + R +D + G GQR I + P GK+ LL + + + Sbjct: 128 PAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSN--- 184 Query: 204 LMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH 256 +++LI ER EV E + + +V +T D PA V+ + A+ ++ Sbjct: 185 -VLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDN 243 Query: 257 KKDVIILLDSITRLARAYNTVVPASGKV-LTGGVDANALHRPKRFFGAARNVEEGGSLTI 315 K V++L DS+TR ARA + A+G+ ++G R E+ GS+T Sbjct: 244 GKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMGEK-GSITA 302 Query: 316 IATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQE 375 T L++ G M+E + +E + + + LSR++AE+ +PAID + +R ++T+ E Sbjct: 303 FYTVLVE-GDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVTSHE 361 Query: 376 ELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 Q ILR+ + E++ LI + D Sbjct: 362 HRQLAAILRRCLALYQEVE---LLIRIGEYQRGVD 393 >UniRef50_Q65JM5 Flagellar-specific ATP synthase n=9 Tax=Bacteria RepID=Q65JM5_BACLD Length = 437 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 139/338 (41%), Gaps = 20/338 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 N+ G + + + +V + P + M+R Sbjct: 76 NIAPGSIVEATGESLRVKVGSGLIGQVVDAFG-NPLDGSVLPKGLAQVSTDQAPPNPMKR 134 Query: 150 GNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 + R +D +G+GQR I A GK+ L+ IA+ A + + ++ L Sbjct: 135 PPIREKMAVGVRSIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARETAAD----LNVIAL 190 Query: 209 IDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 + ER EV E L + VV +T D+PA ++ A A+ + ++V+ Sbjct: 191 VGERGREVREFIEKDLGEEGLKRTIVVVATSDQPALMRLKAAYTATAIAEYFRDKGQNVM 250 Query: 262 ILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 ++DS+TR+A A + A+G+ T G + + E GS+T T L Sbjct: 251 FMMDSVTRVAMAQREIGLATGEPPTTKGYTPSVFAILPKLLERTGTTES-GSITAFYTVL 309 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 +D G M+E I + +G + + L R +A K FPA++ +S +R + ++ ++ Sbjct: 310 VD-GDDMNEPIADTVRGILDGHIVLDRALANKGQFPAVNILKSISRVMSNIAEKDHIRAA 368 Query: 381 WILRKIIHPMGEIDAMEFLINKLAMTK-TNDDFFEMMK 417 R+++ + LIN A K ++ + E ++ Sbjct: 369 NRFREMLSTYQNSED---LINIGAYKKGSSREIDEAIQ 403 >UniRef50_Q2LRZ2 Flagellum-specific ATP synthase n=20 Tax=Bacteria RepID=Q2LRZ2_SYNAS Length = 455 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 143/343 (41%), Gaps = 19/343 (5%) Query: 84 SQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANS 143 L G I + L +V + P + R I E PL+A Sbjct: 83 PLEEVQGLGPGCPIKSLGKKAAVKVGAGLLGRVIDGVG-NPIDNRGPIDTEEEYPLYAEP 141 Query: 144 RLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC 202 + RG S D +VL+ G+GQR I A GK++L+ IA++ + + Sbjct: 142 INPLARGRISDPIDFGVKVLNGLFSCGKGQRMGIFAGSGVGKSVLMGMIARNTSAD---- 197 Query: 203 VLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 + ++ LI ER EV E L + VV + D ++ A + ++ + Sbjct: 198 INVIGLIGERGREVREFLEKNLGKEGLARSVVVVAASDMHPLIRMRAAHVATTVSEYFRD 257 Query: 256 HKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLT 314 +DV++++DS+TR A A + + G+ T G + + A VE GS+T Sbjct: 258 QGRDVLLMVDSLTRFAMAQREIGLSVGEPPTTKGYTPSVFSLLPKLLERAGKVEGRGSIT 317 Query: 315 IIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQ 374 + T L++ G +E I + + + L+LSR++A K +PA+D S +R + ++ Sbjct: 318 GLYTILVE-GDDFNEPISDAARSILDGHLYLSRELAAKNHYPAVDVLNSISRVMIDIVSE 376 Query: 375 EELQKMWILRKIIHPMGEIDAMEFLINKLAMTK-TNDDFFEMM 416 + + II + + LIN A +N + + Sbjct: 377 KHRNMANRILSIIAAHKKAEE---LINIGAYVHGSNAEIDYAI 416 >UniRef50_B1H0B7 ATP synthase subunit alpha n=3 Tax=Bacteria RepID=B1H0B7_UNCTG Length = 513 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 70/436 (16%), Positives = 150/436 (34%), Gaps = 44/436 (10%) Query: 15 ITLGENMGLENLARMRKQDII-FAILKQHAKSGEDIFGDGV--------LEILQDGFGFL 65 + + + E + K ++I F +++ E + G+ +E + GF+ Sbjct: 4 EEIIQKIEKELYSTQVKPELINFGVIETVGD--EIVKASGLSNAGYYEEIEFEDESIGFV 61 Query: 66 RSADSSYLAGPDDIYVSPSQIRRFN-LRTGDTISGKIRPPKEGERYFALLKVNEVNFDKP 124 + D YVS ++ + G + + Y + +V Sbjct: 62 LNIDED--------YVSIVLLKNSGHIVRGMKVKSTGKVLSIAVSYKLIGRVINTLGQPI 113 Query: 125 ENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAG 183 + K + P+ + ++R + + +D +PIGRGQR LI+ G Sbjct: 114 DGNELKHIDSVHYPVEKIAPGIIQRNSVDNPLKTGIKAIDAMTPIGRGQRELIIGDRGTG 173 Query: 184 KTMLLQNIAQSIAYNH---PDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFD 233 KT + + + + + I ++ + + + V+A+T Sbjct: 174 KTAIAVDTIINQKKLDMGLKSVICIYCSIGQKKSNLASITAKLKEEGAMDYTVVIAATAS 233 Query: 234 EPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDAN 292 EPAS + ++ KDV+++ D +T+ A AY + + + Sbjct: 234 EPASMQYIAPLAACAIGEYFMDKGKDVLVVYDDLTKHAWAYRQISLLIKRPAGREAYPGD 293 Query: 293 ALHRPKRFFGAARNV---EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 349 + R A + GG+LT + G+ M I + +++L + Sbjct: 294 IFYLHSRLLERAARMSDKNGGGTLTALPIIETQ-GNDMSAYIPTNVVSITDGQIYLEADL 352 Query: 350 AEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM--------EFLIN 401 + PAI+ S +R T+ Q +R + E+ + E+ + Sbjct: 353 FNSGIRPAINVGLSVSRVGGAAQTKSMKQLAGPVRLELSQFRELQSFTQFGSDLDEYALK 412 Query: 402 KLAMTKTNDDFFEMMK 417 +L K + + + Sbjct: 413 RLERGKRITEILKQQQ 428 >UniRef50_Q0EZL2 Flagellum-specific ATP synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZL2_9PROT Length = 471 Score = 285 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 80/337 (23%), Positives = 137/337 (40%), Gaps = 18/337 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 + GD I P L +V + P + L PLH R Sbjct: 84 GIAPGDPIEPLSTTPSIRVGPHLLGRVLDAQG-NPMDEYALSNLGTLFPLHGTRLNPFTR 142 Query: 150 GNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 L R +D P+G GQR + A GK+ LL +A++ V ++ L Sbjct: 143 HTIDAPMQLGVRAIDACMPMGWGQRMGLFAGAGVGKSTLLGMLARNSDAE----VNVIAL 198 Query: 209 IDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 + ER EV E + L V+ +T D P V+ A M A+ E K V+ Sbjct: 199 VGERSREVREFLDQALGSEALQHSVVIVATSDMPPVLRVRAAHMATTIAEAFREQGKRVL 258 Query: 262 ILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAAR-NVEEGGSLTIIATA 319 +L+DS+TR+A+A + G+ + G + + +GG ++ T Sbjct: 259 LLMDSLTRVAQAQREIGLMLGEPPASKGYTPSCFSILAELLERSGPGTAQGGDISAFYTV 318 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK 379 L++ + I + + + L RK+AE+ FPAI+ RS +R + L E++Q Sbjct: 319 LVEGDDMRADPIADSAMSVLDGHILLDRKLAEQGHFPAINVLRSISRLDTQLMNNEQMQA 378 Query: 380 MWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 +LR+ + + ME +I+ A + ++ + + Sbjct: 379 ARMLRRKMSIF---ERMEDMISIGAYEQGSNPELDNI 412 >UniRef50_Q05FY3 ATP synthase subunit alpha n=33 Tax=Gammaproteobacteria RepID=ATPA_CARRP Length = 481 Score = 284 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 61/412 (14%), Positives = 138/412 (33%), Gaps = 50/412 (12%) Query: 25 NLARMRK--QDIIFAILKQHAKSGEDIFGDG-----VLEILQDGFGFLRSADSSYLAGPD 77 N + K ++ + ++AK GE I V + + + + + L + Sbjct: 3 NEGIINKIYDSVVEVLGLKNAKYGEMILFSKNIKGIVFSLNKKNVNIIILNNYNELTQGE 62 Query: 78 DIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLT 137 Y + + F + G + G+I + + + +I + Sbjct: 63 KCYCTN---KIFEVPVGKQLIGRIINSR----------------GETLDLLPEIKINEFS 103 Query: 138 PLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 196 P+ + M+R + +D PIG+GQR LI+ + GKT + + + Sbjct: 104 PIEKIAPGVMDRETVNEPLLTGIKSIDSMIPIGKGQRELIIGDRQTGKTTICIDTIINQK 163 Query: 197 YNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEK 249 + + + + + I ++ + + L +VAST + A+ Sbjct: 164 --NKNIICVYVCIGQKISSLINIINKLKKFNCLEYTIIVASTASDSAAEQYIAPYTGSTI 221 Query: 250 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE 308 ++ + +D +I+ D +T+ A AY + + + + R + V Sbjct: 222 SEYFRDKGQDCLIVYDDLTKHAWAYRQISLLLRRPPGREAYPGDVFYLHSRLLERSSKVN 281 Query: 309 E-----------GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPA 357 + GSLT + I + ++ L + + P+ Sbjct: 282 KFFVNKKSNILKAGSLTAFPIIET-LEGDVTSFIPTNVISITDGQIFLDTNLFNSGIRPS 340 Query: 358 IDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL-INKLAMTKT 408 I+ S +R + + +R ++ E++A + + TK Sbjct: 341 INVGLSVSRVGGAAQYKIIKKLSGDIRIMLAQYRELEAFSKFSSDLDSETKN 392 >UniRef50_Q9ZJJ3 Flagellum-specific ATP synthase n=41 Tax=Epsilonproteobacteria RepID=FLII_HELPJ Length = 434 Score = 284 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 68/338 (20%), Positives = 134/338 (39%), Gaps = 18/338 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 R GD + L +V + + + +E L P+ ++R Sbjct: 76 GARAGDKVLFLKEGLNFPVGRNLLGRVLNPLGQ-VIDNKGVLDYERLAPVITTPIAPLKR 134 Query: 150 G-NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 G + + +D G+GQ+ I A GK+ L+ I + + ++ L Sbjct: 135 GLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKSTLMGMITRGCLA----PIKVIAL 190 Query: 209 IDERPEEVTEMQR------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 I ER E+ E L +V +T D+ A + A+ DV+ Sbjct: 191 IGERGREIPEFIEKNLKGDLSSCVLVVATSDDSPLMRKYGAFCAMSVAEYFKNQGLDVLF 250 Query: 263 LLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALI 321 ++DS+TR A A + A G+ + G +AL + A E GS+T + L+ Sbjct: 251 IMDSVTRFAMAQREIGLALGEPPTSKGYPPSALSLLPQLMERAGKEENKGSITAFFSVLV 310 Query: 322 DTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMW 381 + G + + I ++ + + + LSR++ + ++P I+ S +R + + ++ + Sbjct: 311 E-GDDLSDPIADQARSILDGHIVLSRELTDYGIYPPINILNSASRVAKDIISESQNLCAR 369 Query: 382 ILRKIIHPMGEIDAMEFLINKLAMTKTND-DFFEMMKR 418 R++ + E + LI + ND + E +K+ Sbjct: 370 KFRRLYALLKENE---MLIRIGSYQMGNDKELDEAIKK 404 >UniRef50_P25705 ATP synthase subunit alpha, mitochondrial n=1593 Tax=cellular organisms RepID=ATPA_HUMAN Length = 553 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 62/416 (14%), Positives = 136/416 (32%), Gaps = 48/416 (11%) Query: 6 LKNTPVSELITLGENMGL-ENLARMRKQDIIFAILKQHAKSGEDIFGDGV----LEILQD 60 L +L G + + + +AR+ + A+ F G+ L + D Sbjct: 60 LGADTSVDLEETGRVLSIGDGIARVH------GLRNVQAEEM-VEFSSGLKGMSLNLEPD 112 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G + + + D + + + + ++ G+ + G++ ++ Sbjct: 113 NVGVVVFGNDKLIKEGDIVKRTGAIV---DVPVGEELLGRVVDALGN----------AID 159 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 P ++ + P + + +D PIGRGQR LI+ Sbjct: 160 GKGPIGSKTRRRVGLKAP-----GIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDR 214 Query: 181 KAGKTMLLQNIAQSIAYNH------PDCVLMVLLIDERPEEV-------TEMQRLVKGEV 227 + GKT + + + + + + I ++ V T+ + V Sbjct: 215 QTGKTSIAIDTIINQKRFNDGSDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 274 Query: 228 VASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG 287 V++T + A + ++ K +I+ D +++ A AY + + Sbjct: 275 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 334 Query: 288 -GVDANALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 + + R A + GGSLT + G + I + ++ Sbjct: 335 EAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAG-DVSAYIPTNVISITDGQI 393 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 L ++ K + PAI+ S +R T+ Q ++ + E+ A Sbjct: 394 FLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREVAAFAQF 449 >UniRef50_D1B4Z7 Flagellar protein export ATPase FliI n=6 Tax=Campylobacterales RepID=D1B4Z7_SULD5 Length = 434 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 75/418 (17%), Positives = 153/418 (36%), Gaps = 33/418 (7%) Query: 5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGF 64 +L+ +S + + + + I I+ + + V E+ ++ F Sbjct: 9 KLQEKSLSPMFGTITKISSTTIEACGLRPSIGDIVNIVSLDSDKNELGMVTEVDRNAFFI 68 Query: 65 LRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKP 124 D +++S + + G+ + G++ P + + Sbjct: 69 SPFGFIEGFKIGDKVFISE---QGMMIPVGEELLGRVVDP----------FIRPKDGKGA 115 Query: 125 ENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGK 184 AR+ PL R + + + +D G+GQ+ I A K Sbjct: 116 IGARS-SASIMKAPLDPMKRGLI----NEPFCVGVKTIDGLLTCGKGQKMGIFAGSGVDK 170 Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR------LVKGEVVASTFDEPASR 238 + L+ I + + +V LI ER EV E L ++ +T D+ Sbjct: 171 STLMGMIVRGSEA----PIKVVALIGERGREVPEFIEKNLGGNLENTVIIVATSDDSPLM 226 Query: 239 HVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRP 297 A + A+ +DV+ ++DS+TR A A + A G+ + G + L Sbjct: 227 RKYGAFSAMSVAEYFKNQGRDVLFMMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLALL 286 Query: 298 KRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPA 357 + A E GS+T T L++ G + + I ++ + + + LSR++ + ++P Sbjct: 287 PQLMERAGKEEGKGSITAFFTVLVE-GDDLSDPIADQSRSILDGHIVLSRELTDYGIYPP 345 Query: 358 IDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEM 415 I+ S +R + E + +++ + E + LI A K ND ++ Sbjct: 346 INIQNSASRVMGDVIETEHKKAAMRFKRLNSILKENE---VLIRIGAYEKGNDKELDL 400 >UniRef50_D2LCY5 ATPase, FliI/YscN family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LCY5_RHOVA Length = 459 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 70/311 (22%), Positives = 124/311 (39%), Gaps = 17/311 (5%) Query: 114 LKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQ 172 +V + +N P+ L +ER RV+D+ +P+ GQ Sbjct: 121 GRVIDALGRPIDNGPPLARGRRSIPVDQAPPLALERQRVSEPVPTGVRVIDVFTPLCAGQ 180 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKG 225 R I A GK+ LL + + +++ V + I ER EV E L K Sbjct: 181 RIGIFAGSGVGKSTLLSMLTRGSSFD----VTVFAAIGERGREVREFIDDTLAKAGLAKA 236 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 +V ST DE A+ A+ + + V+++ DS+TR A A + +SG+ Sbjct: 237 VLVVSTSDESPMMRRLAAKTAFTVAEYFRDEGQRVLLVFDSVTRYAHAVREIALSSGEPP 296 Query: 286 -TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELH 344 + G + + A N GS+T + + L+D G ++ + + +G + + Sbjct: 297 VSRGYPPSVFTDLPKLLERAGNASGTGSITGVFSVLVD-GDDHNDPVADTLRGILDGHIV 355 Query: 345 LSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 L R IA++ FPA+D S +R + + + + LR +I E + + Sbjct: 356 LDRAIADQGRFPAVDILGSVSRLAPRVWSPSQKTAVRDLRGLISRFEETRDIRMIA---G 412 Query: 405 MTKTNDDFFEM 415 ND + Sbjct: 413 HKPNNDAELDK 423 >UniRef50_P80153 Probable ATP synthase hrpB6 n=230 Tax=Bacteria RepID=HRPB6_XANEU Length = 442 Score = 280 bits (715), Expect = 9e-74, Method: Composition-based stats. Identities = 82/330 (24%), Positives = 136/330 (41%), Gaps = 19/330 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 L + G RP L +V + +P + + I + P+ A + M R Sbjct: 82 GLSRETRVIGLGRPLAVPVGPALLGRVLDGLG-EPSDGQGAIACDTWVPIQAQAPDPMRR 140 Query: 150 GNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 R++D +G GQR I A GK+ L+ A+ + V +++L Sbjct: 141 RLIEHPMPTGVRIVDGLMTLGEGQRMGIFAAAGVGKSTLMGMFARGTQCD----VNVIVL 196 Query: 209 IDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ER EV E L+ + VV +T D + + A + A+ + V+ Sbjct: 197 IGERGREVREFIELILGADGLARSVVVCATSDRSSIERAKAAYVGTAIAEYFRDRGLRVL 256 Query: 262 ILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 +++DS+TR ARA + A+G+ T G + R A E GS+T T L Sbjct: 257 LMMDSLTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMGES-GSITAFYTVL 315 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 + + I EE +G + L LSR+IA K +PAID S +R + + Q Sbjct: 316 AE-DDTGSDPIAEEVRGILDGHLILSREIAAKNQYPAIDVLASLSRVMSQIVPYDHSQAA 374 Query: 381 WILRKIIHPMGEIDAMEFLINKLAMTKTND 410 LR+++ E++ L+ + +D Sbjct: 375 GRLRRLLAKYNEVE---TLVQVGEYRQGSD 401 >UniRef50_O83417 Flagellum-specific ATP synthase n=106 Tax=Bacteria RepID=FLII_TREPA Length = 447 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 77/334 (23%), Positives = 135/334 (40%), Gaps = 17/334 (5%) Query: 89 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRME 148 + G + + L +V + L A+S Sbjct: 78 HGVEVGCAVVAEGAALSVPVGDALLGRVLNAFGKAIDGKGEIYAPLRSEVLRASSNPMER 137 Query: 149 RGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 RVLD +G GQR I + GK+ L+ IA++ + V ++ L Sbjct: 138 LPITRQMVTGVRVLDSLLAVGCGQRLGIFSGSGVGKSTLMGMIARNTDAD----VSVIAL 193 Query: 209 IDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ER EV + L + +V++T DE V+ A A+ + K V+ Sbjct: 194 IGERGREVMDFVAHDLGPEGLKRSVIVSATSDESPLARVRGAYTATAIAEYFRDQGKQVL 253 Query: 262 ILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 +L DS+TR A+A + ASG++ T G + A + GS+T T L Sbjct: 254 LLFDSLTRFAKAQREIGLASGELPATRGYTPGVFETLPKLLERAGSF-SMGSVTAFYTVL 312 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 +D G +DE I + +G + + LSR +A++ +PAID +S +R + + + + Sbjct: 313 VD-GDDLDEPISDAVRGIVDGHIVLSRALAQRNHYPAIDVLQSVSRLAHRVLGADMKEAV 371 Query: 381 WILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFE 414 I+R+ + E++ L+ A + +D + Sbjct: 372 RIVRRALAVYAEVED---LVRVGAYQQGSDAELD 402 >UniRef50_A0AGH1 Complete genome n=21 Tax=Listeria RepID=A0AGH1_LISW6 Length = 433 Score = 279 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 81/334 (24%), Positives = 142/334 (42%), Gaps = 15/334 (4%) Query: 94 GDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER-GNG 152 GD + F L KV + D ++ PL A R Sbjct: 79 GDWVYVTDTKITIPADEFLLGKVLNASGDILNEEAGIAPYKQKMPLEAPPIHAFSRAEIT 138 Query: 153 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 212 T + + +D IG GQ+ I A GK+ LL IA++ + + ++ L+ ER Sbjct: 139 ETLETGIKAIDGMLTIGIGQKIGIFAGSGVGKSTLLGMIARNAKAD----INIIGLVGER 194 Query: 213 PEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLD 265 EV + R L K +VA+T DE ++ A++ A+ + K V++++D Sbjct: 195 GREVKDFLRKDLGEEGLQKSVIVAATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMD 254 Query: 266 SITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGS 325 S+TR A A +V A + GG K+ + + GS+T I T L+D G Sbjct: 255 SVTRFADARRSVDIAVKDLPIGGKTLLMESYMKKLLERSGKTQN-GSITGIYTVLVD-GD 312 Query: 326 KMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRK 385 M+ + + +G + + L+R++A K +PAID S +R E + + + + +R+ Sbjct: 313 DMNGPVPDLARGILDGHIVLTRELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIRE 372 Query: 386 IIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419 + E + + F + + T N F ++S Sbjct: 373 WMSIYQENE-LYFKLGTIEQTSDNAAIFTSKEKS 405 >UniRef50_C9KMG4 ATP synthase subunit alpha n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMG4_9FIRM Length = 505 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 66/384 (17%), Positives = 127/384 (33%), Gaps = 36/384 (9%) Query: 41 QHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK 100 + G DI+G VL + QD G + + + + + R + G+ + G+ Sbjct: 51 ELLDFGNDIYG-LVLNLEQDNVGAVILGGETKIKEGSQVKRTG---RIMQVPVGEAMIGR 106 Query: 101 IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTA 159 + +P + + KI P+ + +R Sbjct: 107 VVDAL----------------GRPIDGKGKIETTETRPVEYPAPGIADRKPVKEPLQTGI 150 Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 + +D PIGRGQR LI+ GKT + + + + C+ + + I ++ V + Sbjct: 151 KAIDALVPIGRGQRELIIGDRGIGKTAIAIDTILNQHDQN--CICVYVAIGQKASTVARV 208 Query: 220 -------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 + VVA+T + + + A+ + K + + D +T+ A Sbjct: 209 VKTLEERGAMDYTIVVAATAADSSPLQYLAPYAGVAMAEHFMYQGKACLCVYDDLTKHAA 268 Query: 273 AYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMD 328 AY + + + + R A + GGS+T + G + Sbjct: 269 AYRAMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSITALPIIETQAG-DLS 327 Query: 329 EVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIH 388 I + ++ L + PAI+ S +R + Q LR + Sbjct: 328 AYIPTNVISITDGQIMLETDSFYSGIRPAINVGLSVSRVGGSAQIKAMKQVAGTLRLDLA 387 Query: 389 PMGEIDAMEFL-INKLAMTKTNDD 411 E+ A + TK D Sbjct: 388 QYRELAAFSQFASDLDKETKAQLD 411 >UniRef50_O85632 EscN n=34 Tax=Enterobacteriaceae RepID=O85632_ECOLX Length = 446 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 83/338 (24%), Positives = 141/338 (41%), Gaps = 31/338 (9%) Query: 88 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRM 147 F +R GD + G++ + A + FE L + Sbjct: 101 EFKIRVGDALLGRLVDGIGRP-------------MESNIAAPYLPFERSLYAEPPDPL-L 146 Query: 148 ERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207 + L R +D G GQR I A GK+ LL I + + ++++ Sbjct: 147 RQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD----IIVLA 202 Query: 208 LIDERPEEVTEMQRLVK------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 LI ER EV E L+ +V +T D PA ++ A A+ + K+V+ Sbjct: 203 LIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVL 262 Query: 262 ILLDSITRLARAYNTVVPASGKV-LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 +++DS+TR ARA V ASG+ + GG + + A GS+T I T L Sbjct: 263 LMMDSVTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAG-PAPKGSITAIYTVL 321 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 +++ +++ I +E + + + L+R++AE+ FPAID S +R + T E L+ Sbjct: 322 LES-DNVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAA 380 Query: 381 WILRKIIHPMGEIDAMEFLINKLAMTKTND-DFFEMMK 417 +K+I ++ LI T D + + +K Sbjct: 381 AECKKLIATYKNVE---LLIRIGEYTMGQDPEADKAIK 415 >UniRef50_B9L4D4 Flagellar protein export ATPase FliI n=13 Tax=Bacteria RepID=B9L4D4_THERP Length = 450 Score = 278 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 82/350 (23%), Positives = 142/350 (40%), Gaps = 19/350 (5%) Query: 79 IYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTP 138 I V +++R +R G + L +V + P + + + Sbjct: 72 ILVPLAELR--GVRHGSRVVRAPEALHVPVGPELLGRVIDGLGR-PIDGKGPLRCRRRLR 128 Query: 139 LHANSRLRMERGNGST-EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 197 + ++R R +D GRGQR I A GK+ LL I+++ Sbjct: 129 IGGAPPSPLQRAPIRDILPTGVRTIDALLTCGRGQRLGIFAGSGVGKSTLLGMISRNAVC 188 Query: 198 NHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKA 250 + V ++ LI ER EV E L + VV ST D+PA ++ A A Sbjct: 189 D----VRVIALIGERGREVQEFIERDLGPAGLEQAVVVVSTSDQPALMRIKAAWTATLIA 244 Query: 251 KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEE 309 + + V++++DS+TRLA A V A+G+ T G + R A N E+ Sbjct: 245 EYFRDRGMSVVLMMDSVTRLAMAQREVGLAAGEPPATRGYPPSVFALLPRLLERAGNAEQ 304 Query: 310 GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE 369 GS+T T L++ G ++E I + +G + + L+R +A++ +PAID S +R Sbjct: 305 -GSITAFYTVLVE-GDDLNEPISDTVRGILDGHIVLARTLADRGHYPAIDVLASVSRLMP 362 Query: 370 LLTTQEELQKMWILRKIIHPMGEIDAMEFLINKL-AMTKTNDDFFEMMKR 418 L T + +R+++ + + + T D +M Sbjct: 363 SLVTPDHRALASEVRELLAAYESARDLIDIGAYVHGTNPTVDRALSLMPE 412 >UniRef50_A0RC86 Flagellum-specific ATP synthase n=70 Tax=Bacillus cereus group RepID=A0RC86_BACAH Length = 434 Score = 276 bits (707), Expect = 8e-73, Method: Composition-based stats. Identities = 73/332 (21%), Positives = 135/332 (40%), Gaps = 14/332 (4%) Query: 94 GDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGS 153 GD+++ L KV N + I + + Sbjct: 81 GDSVTLVSEDVVIPRGNHLLGKVLSANGEVLNENAENIPLQKIKLDAPPIHAFEREEITD 140 Query: 154 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERP 213 + + +D IG GQ+ I A GK+ LL IA++ + + ++ L+ ER Sbjct: 141 VFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD----INVISLVGERG 196 Query: 214 EEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDS 266 EV + R + K VV +T DE ++ A++ A+ + +V++++DS Sbjct: 197 REVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDS 256 Query: 267 ITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSK 326 +TR A A +V A ++ GG K+ + ++ GS+T I T L+D G Sbjct: 257 VTRFADARRSVDIAVKELPIGGKTLLMESYMKKLLERSGKTQK-GSITGIYTVLVD-GDD 314 Query: 327 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKI 386 ++ + + +G + + L R++A +PAI S +R E + + Q +RKI Sbjct: 315 LNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVSPTHWQLANEMRKI 374 Query: 387 IHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 + E + + F + + N FE + Sbjct: 375 LSVYKENE-LYFKLGTIQENTENAYIFECKNK 405 >UniRef50_Q5DY25 Lateral flagellar export/assembly protein (LfiI-like) n=78 Tax=Proteobacteria RepID=Q5DY25_ECOLX Length = 445 Score = 276 bits (707), Expect = 8e-73, Method: Composition-based stats. Identities = 81/328 (24%), Positives = 140/328 (42%), Gaps = 17/328 (5%) Query: 87 RRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF-DKPENARNKILFENLTPLHANSRL 145 + L G + + + L +V VN +P + + ++ +L P S Sbjct: 76 QPVGLMAGARVFPEEKAHDILIGESWLGRV--VNGLGEPLDGKGRLNGNDLLPPLPPSVN 133 Query: 146 RM-ERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL 204 + R D+ + ++ IG+GQR ++A GK++LL I + + ++ Sbjct: 134 PLTRRSVDEPLDVGVKAINGLLTIGKGQRVGLMAGSGVGKSVLLGMITRQTKAD----IV 189 Query: 205 MVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK 257 +V LI ER EV E L K VV + DE ++ E+ A + Sbjct: 190 VVGLIGERGREVKEFIDHSLGADGLAKSIVVVAPADESPLMRLKATELCHSIAAWFRDRG 249 Query: 258 KDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTII 316 V++L+DS+TR A A + + G+ T G +A + +A N E GS+T I Sbjct: 250 HHVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFGMIPKLVESAGNSESSGSMTAI 309 Query: 317 ATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEE 376 T L + G + I + + + + L+RK+AE +PAID +S +R +T+ E Sbjct: 310 YTVLAE-GDDQQDPIVDCARAVLDGHIVLTRKLAEAGHYPAIDIGQSISRCMNQVTSLEH 368 Query: 377 LQKMWILRKIIHPMGEIDAMEFLINKLA 404 Q L++ EI + L +A Sbjct: 369 QQSARALKQNYAAYMEIKPLIPLGGYVA 396 >UniRef50_Q9I4N1 Flagellum-specific ATP synthase n=174 Tax=Proteobacteria RepID=FLII_PSEAE Length = 451 Score = 276 bits (707), Expect = 9e-73, Method: Composition-based stats. Identities = 73/320 (22%), Positives = 136/320 (42%), Gaps = 16/320 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 + G + + L +V + + + + E+ P+ + ++R Sbjct: 87 GIAPGARVVPLPDTGRLPMGMSMLGRVLDGAGR-ALDGKGGMRAEDWVPMDGPTINPLKR 145 Query: 150 GNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 D+ R ++ +GRGQR + A GK++LL + + + +++V L Sbjct: 146 HPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGKSVLLGMMTRFTRAD----IIVVGL 201 Query: 209 IDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ER EV E + GE VVAS D+ ++ A+ A+ + K+V+ Sbjct: 202 IGERGREVKEFIDEILGEEGLKRSVVVASPADDAPLMRLRAAQYCTRIAEYFRDKGKNVL 261 Query: 262 ILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVE-EGGSLTIIATA 319 +L+DS+TR A+A + A G+ T G + + + A N E GGS+T T Sbjct: 262 LLMDSLTRYAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEAGGGSITAFYTV 321 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK 379 L + G + I + +G + LSR++AE+ +PAID S +R + E L+ Sbjct: 322 LSE-GDDQQDPIADAARGVLDGHFVLSRRLAEEGHYPAIDIEASISRVMPQVVEAEHLRD 380 Query: 380 MWILRKIIHPMGEIDAMEFL 399 +++ + + + Sbjct: 381 AQRFKQLWSRYQQSRDLISV 400 >UniRef50_C0QZ72 Flagellar biosynthesis/type III secretory pathway ATPase n=34 Tax=Bacteria RepID=C0QZ72_BRAHW Length = 484 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 74/351 (21%), Positives = 134/351 (38%), Gaps = 37/351 (10%) Query: 68 ADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENA 127 + + + +Y S R ++ D I G + + KP Sbjct: 85 GPVNGITFGNMVY---SFERPLSVMCCDEILGTVLDAR----------------GKPLAG 125 Query: 128 RNKILFENLTPLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTM 186 +E P+ ++ M R R +D +G+GQR I++ GK+ Sbjct: 126 GGHNFYETPIPVSHSAVNPMNRPRINKHIQTGVRAIDGLLTVGQGQRMAIMSGTGVGKST 185 Query: 187 LLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRH 239 LL IA++ + V ++ LI ER EV + L + +V +T D+ Sbjct: 186 LLSMIARNTNAD----VNVIALIGERRREVRDFIERDLGEEGLKRSILVVATSDDAPLLR 241 Query: 240 VQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPK 298 V+ A A+ + K+V+ ++DS+TR A A + + G+ T G + Sbjct: 242 VRAAYTATTIAEYFRDKGKNVMFMVDSVTRFALAQREIGLSRGEPPTTRGYTPSVFSELA 301 Query: 299 RFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAI 358 + GS+T L++ G +DE I + +G + + LSR +A + FPAI Sbjct: 302 KLLERTG-TSSKGSITAFYNVLVE-GDDLDEPITDAVRGILDGHIVLSRDLANRGHFPAI 359 Query: 359 DYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 D N+S +R + + + K+ E + + K + Sbjct: 360 DVNKSISRIMNEVVSNMHKRAAREFLKMSADYNEAKELIMI---GGYAKGS 407 >UniRef50_A1T0I0 ATPase, FliI/YscN family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T0I0_PSYIN Length = 436 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 147/339 (43%), Gaps = 23/339 (6%) Query: 96 TISGKIRPPKEGERYFA----LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN 151 + K+ P K+ E Y L +V + + ++ + + +T A + +++ Sbjct: 75 YVGSKVIPLKKTEHYHIDNSWLGRVLNAHGEAIDDLPSPRGIDTITLRSAEAINILKKKP 134 Query: 152 G-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 210 D+ + ++ + +GQR +VA GK++L+ I + + V++V LI Sbjct: 135 ISEPFDVGIKSINGLLTLAKGQRVGLVAGSGVGKSVLMGMITKFSEAD----VVVVGLIG 190 Query: 211 ERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 ER EV E L K V+A+ D+ +Q E+ A+ + +V++L Sbjct: 191 ERNREVREFIEKNIGAEGLKKSVVIAAPADQSPLMRIQATELCHSVAEYYRDKGANVLLL 250 Query: 264 LDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARN-VEEGGSLTIIATALI 321 +DS+TR A A V + G++ G + + N E G++T I T L Sbjct: 251 VDSLTRYAMAQREVAISLGELPAIKGYPPSVFSFIPPLLERSGNGHENAGTMTAIYTILS 310 Query: 322 DTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMW 381 + + + + K + + LS+++A++ FPA+D +S +R + + ++ LQ Sbjct: 311 EGDEDY-DPVVDTAKAILDGHIVLSKELAQRGQFPAVDIEKSISRCMDAVVSEPHLQIAR 369 Query: 382 ILRKIIHPMGEIDAMEFLINKLAMTKTND-DFFEMMKRS 419 +++ + + L + ND + E ++++ Sbjct: 370 QCKRLYSMYNKAKDLIAL---GGYQQGNDPELDEAIQKN 405 >UniRef50_C0QPA7 Flagellar protein export ATPase FliI n=1 Tax=Persephonella marina EX-H1 RepID=C0QPA7_PERMH Length = 443 Score = 274 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 86/331 (25%), Positives = 139/331 (41%), Gaps = 16/331 (4%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 +R G + + P L V + +++I + L + ++R Sbjct: 68 GIRVGSWVEARQEPVSIEVGEELLGTVLDPFGKPLN--KDRINPSHHYYLKNATINPLDR 125 Query: 150 GNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 D+ R ++ IG+GQR I + GK+ LL I++ + V ++ L Sbjct: 126 ERIKEPLDVGVRSINALLTIGKGQRIGIFSGAGVGKSTLLGMISRFTEAD----VNVIAL 181 Query: 209 IDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ER EV E L K V+ +T D+ ++ A I AK K+V+ Sbjct: 182 IGERGREVREFIEDNLGEEGLKKSVVIVATSDQTPLAKIRAAYSAIAVAKFFSNSGKNVL 241 Query: 262 ILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 LLDS+TRLA A + A G+ T G + +F A N GS+T I T L Sbjct: 242 FLLDSLTRLAMAQREIGLAVGEPPTTKGYTPSVFALLPKFIEQAGNFYNRGSITGIYTVL 301 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 ++ + + + G + + LSR++A KRVFPAID +S +R + + + L+ Sbjct: 302 VEGDDITMDPVADAAMGFLDGHIVLSRELANKRVFPAIDVLKSVSRLMPQIVSDDILKYQ 361 Query: 381 WILRKIIHPMGEIDAMEFL-INKLAMTKTND 410 I +I E + M L + K T D Sbjct: 362 GIFTEIESIYREAEDMINLGLYKKGTTPKVD 392 >UniRef50_Q1AVH7 ATP synthase subunit alpha n=71 Tax=cellular organisms RepID=ATPA_RUBXD Length = 526 Score = 274 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 61/405 (15%), Positives = 141/405 (34%), Gaps = 36/405 (8%) Query: 15 ITLGENMGL-ENLARMR-KQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSY 72 +G+ + + + +AR+ ++++ + + + + L + +D G + + D Y Sbjct: 27 EEVGQVLEVGDGIARVHGLSNVMYQEMVEFEDARGEKVIGLALNLEEDNVGVIIAGDDRY 86 Query: 73 LAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132 + + + R ++ G + G++ +P + R +I Sbjct: 87 ILEGSTVRRTG---RLASVPVGQGVLGRVINAL----------------GQPIDGRGEIQ 127 Query: 133 FENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNI 191 E P+ + + R + + + +D PIGRGQR LI+ K GKT L + Sbjct: 128 AEETRPVEIIAPGIIRRKDVDTPLQTGIKAIDSMIPIGRGQRELIIGDRKTGKTALAVDT 187 Query: 192 AQSIAYNHPDCVLMVLLIDERPEEVT-------EMQRLVKGEVVASTFDEPASRHVQVAE 244 + + + + + ++ V E + V+ ++ +PA Sbjct: 188 IINQHDQN--VKCIYVAVGQKDSAVAGVVAQLEEYGAMEYTTVINASASQPAPLQYLAPY 245 Query: 245 MVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGA 303 + + +D +++ D +++ A AY ++ + + + R Sbjct: 246 AGCAIGEYFMHRGEDALVIYDDLSKHAVAYRQMMLLLRRPPGREAYPGDIFYLHSRLLER 305 Query: 304 ARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 A + GGSLT + G + I + ++ L + PAID Sbjct: 306 AARMSEEYGGGSLTALPIIETKAG-DISAYIPTNVISITDGQIFLDLDLFNANQRPAIDV 364 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 S +R + + L+ + E+ + + L Sbjct: 365 GLSVSRVGSSAQIKAMKKVAGTLKLDLSQYRELASFAQFGSDLDK 409 >UniRef50_P52607 Flagellum-specific ATP synthase n=21 Tax=Borrelia RepID=FLII_BORBU Length = 436 Score = 273 bits (699), Expect = 7e-72, Method: Composition-based stats. Identities = 72/330 (21%), Positives = 130/330 (39%), Gaps = 16/330 (4%) Query: 79 IYVSPSQIRRF-NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLT 137 YVS F + G+ + + + L +V + P + + L + Sbjct: 65 PYVSLMAYEGFSGIEVGNKVYSLNKGLEINLSDELLGRVIDSLGR-PIDNKGSFLNNSYK 123 Query: 138 PLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 196 L + R +VLD P+ +GQR I + GK+ LL IA++ Sbjct: 124 ELIFEKINPINRSIFEDQILTGVKVLDGFLPVAKGQRVGIFSGSGVGKSTLLGMIAKNSN 183 Query: 197 YNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEK 249 + V ++ I ER E+ E +RL K +V ST DE + A + Sbjct: 184 AD----VNVIAFIGERGRELNEFIEHELGEERLKKSVLVVSTSDESPISRYKGAYVATMI 239 Query: 250 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVE 308 A+ E KDV +L DSITR A A + + G+ G + + Sbjct: 240 AEYFREQGKDVALLFDSITRFANAKREMSLSLGEPPVAKGYPPSVFVEIPILLERSGFNG 299 Query: 309 EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE 368 GGS+T T L++ G E + + K + + L R + ++ ++P+I+ S +R Sbjct: 300 NGGSVTGFYTVLVE-GDDFTEPVADNIKAVLDGHIILDRDLFDRGIYPSINVLSSTSRSI 358 Query: 369 ELLTTQEELQKMWILRKIIHPMGEIDAMEF 398 + + E+ + + R ++ + + + Sbjct: 359 HRIMSLEKQKLIMKARNLLSIYKDYEDLIR 388 >UniRef50_UPI0001C31239 flagellar protein export ATPase FliI n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31239 Length = 489 Score = 273 bits (699), Expect = 7e-72, Method: Composition-based stats. Identities = 82/340 (24%), Positives = 141/340 (41%), Gaps = 31/340 (9%) Query: 88 RFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRM 147 F +R G + G++ KP + + + +A+ + Sbjct: 106 PFRIRVGQDLLGRVIDGL----------------GKPIDGMPRATNGHPRSTNASPPDPL 149 Query: 148 ERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV 206 +R DL R LD P GRGQR I A GK+ LL IA+S + V ++ Sbjct: 150 DRPRIDQRVDLGVRALDALVPCGRGQRLGIFAGSGVGKSSLLGMIARSTTAD----VNVI 205 Query: 207 LLIDERPEEVTEMQR------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260 L+ ER EV E L + VV +T D+PA ++ A A+ + DV Sbjct: 206 ALVGERGREVKEFVERDLGDALSRSVVVVATSDQPALVRIKAAFTATAIAEHFRDQGNDV 265 Query: 261 IILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATA 319 ++++DS+TR A A V A G+ T G + + R + GS+T + T Sbjct: 266 MLMMDSVTRFAMAQREVGLAIGEPPATRGYTPSVFAQLPRLLERSG-TARTGSITGLYTV 324 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK 379 L+D G M+E I + + + + L+R++A +PAID +S +R + + E Sbjct: 325 LVD-GDDMNEPIADAVRSILDGHVVLTRELAHASHYPAIDVLQSVSRLVGEIVSPEVRAA 383 Query: 380 MWILRKIIHPMGEIDAMEFL-INKLAMTKTNDDFFEMMKR 418 +R+++ E + + + + T D + + Sbjct: 384 GQAVRQLMASYKEKEDLIAIGAYQGGTDPTVDAAIALRPQ 423 >UniRef50_D2TY23 Type III secretion cytoplasmic ATP synthase (YscN,SpaL,MxiB,HrcN,EscN) n=1 Tax=Arsenophonus nasoniae RepID=D2TY23_9ENTR Length = 457 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 78/370 (21%), Positives = 144/370 (38%), Gaps = 42/370 (11%) Query: 65 LRSADSSYLAGPDDI-YVSPSQIRRFN----LRTGDTISGKIRPPKEGERYFALLKVNEV 119 +++ ++ I VS + + R +R G+ + G I Sbjct: 87 IKAQEAWLSPFDSTIGLVSGACVERLGHGHRVRVGEHLLGGIVDGL-------------- 132 Query: 120 NFDKPENARNKILFENLTPLHANSRLRMERG-NGSTEDLTARVLDLASPIGRGQRGLIVA 178 +P + H + + R + +D +G GQR I A Sbjct: 133 --GRPLEKMP--IAGEWRSNHNAAPDPLTRQLISEVLPTGIKAIDGILTLGVGQRIGIFA 188 Query: 179 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ-------RLVKGEVVAST 231 GK+ LL +A+ + V+++ L+ ER EV E K +V +T Sbjct: 189 AAGGGKSTLLGMLARGCEAD----VVVLALVGERGREVREFLDNHLPATARKKTILVVAT 244 Query: 232 FDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVD 290 D P ++ + A+ + K V++L+DS+TR ARA + A+G+ G Sbjct: 245 SDRPPLERMKASLTATTIAEYFRDQGKQVLLLVDSLTRFARAAREIGLAAGEPPVANGFP 304 Query: 291 ANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA 350 + A + GS++ I T L++ G M+E + +E + + + LSR++A Sbjct: 305 PSVFVHMAALLERAG-PAKVGSISAIYTVLVE-GDNMNEPVADEVRSILDGHIVLSRQLA 362 Query: 351 EKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 FPAID N S +R + + ++ LR++ ++ LI D Sbjct: 363 AAGHFPAIDVNASVSRVMDNIVSKTHSLHARRLRQLRALF---QDVQLLIRVGEYQSGQD 419 Query: 411 -DFFEMMKRS 419 D E ++++ Sbjct: 420 KDTDEAIEKN 429 >UniRef50_C1A560 Flagellum-specific ATP synthase n=6 Tax=Bacteria RepID=C1A560_GEMAT Length = 457 Score = 271 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 79/335 (23%), Positives = 145/335 (43%), Gaps = 19/335 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 L G ++ R L +V P + + K+ L A ++R Sbjct: 90 GLHAGASVQPLGRSFGVDVGPGLLGRVLNGLG-HPIDGKGKLDTIERVSLSAEPPNPLQR 148 Query: 150 GNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 + R +D IGRGQR I A GK+ +L +A+S + V ++ L Sbjct: 149 ETIDRPMETGVRAIDGLLTIGRGQRVGIFAGSGVGKSTMLGMVARSAKAD----VNVIAL 204 Query: 209 IDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 + ER EV E L + V+ +T D+ A + A + A+ + K+V+ Sbjct: 205 LGERGREVREFLENSLGAEGLARSVVIVATGDQAALVRARGALVATAIAEYFRDQGKEVL 264 Query: 262 ILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 +++DS+TR+A A+ + A+G+ T G + R A N E GG +T I T L Sbjct: 265 LMVDSVTRVAMAWREIGLATGEPPTTKGYPPSVFANLPRLLERAGNGERGG-ITGIYTVL 323 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 +D G +E + + + + + L+R++A + FPAID S +R ++ +T + + + Sbjct: 324 VD-GDDFNEPVADAARSILDGHIVLTRRLAAQNHFPAIDVLDSKSRVKDHITNEAQRRSG 382 Query: 381 WILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEM 415 + ++ E + + + A K +D + + Sbjct: 383 AAMLRLEAAYREKEDLIMV---GAYQKGSDPYVDA 414 >UniRef50_Q2RX15 ATPase FliI/YscN n=35 Tax=Alphaproteobacteria RepID=Q2RX15_RHORT Length = 475 Score = 271 bits (692), Expect = 5e-71, Method: Composition-based stats. Identities = 73/308 (23%), Positives = 123/308 (39%), Gaps = 18/308 (5%) Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN-GSTEDLTARVLDLASPIGRG 171 L +V + + E + R G DL R ++ RG Sbjct: 102 LGRVINAMGEAVDGKGALPAGERAVAIRGRPPSAHSRQRVGGKLDLGVRAINTFLTCCRG 161 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVK 224 QR I A GK+ ++ ++ + V+++ L+ ER E E L + Sbjct: 162 QRMGIFAGSGVGKSSVMSMFIRNTNAD----VIVMGLVGERGREAREFIEDDLGEEGLKR 217 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 V +T DE Q A M + A+ + DV+ L+DS+TR A A + ++G+ Sbjct: 218 AVTVVATSDESPLMRRQAAYMTLAVAEYFRDQGLDVLCLMDSVTRFAMAQREISLSAGEP 277 Query: 285 L-TGGVDANALHRPKRFFGAAR-NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 + G + A VE GS+T + T L++ G +E I + +G + Sbjct: 278 PASKGYTPTVFAELPKLLERAGPGVEGSGSITGLFTVLVE-GDDHNEPISDAVRGILDGH 336 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 + L R IAE+ +PAI+ RS +R + E + R+++ + M LI Sbjct: 337 IVLDRAIAERGRYPAINILRSVSRTMPGCNSPAENALVAKGRRLMAAY---ENMAELIRL 393 Query: 403 LAMTKTND 410 A K +D Sbjct: 394 GAYRKGSD 401 >UniRef50_A6W8K0 ATPase, FliI/YscN family n=44 Tax=Bacteria RepID=A6W8K0_KINRD Length = 453 Score = 270 bits (690), Expect = 8e-71, Method: Composition-based stats. Identities = 91/370 (24%), Positives = 144/370 (38%), Gaps = 26/370 (7%) Query: 65 LRSADSSYLAGPDDIYVSPSQIR------RFNLRTGDTISGKIRPPKEGERYFALLKVNE 118 +R D Y + + S++R L G RP L +V + Sbjct: 58 VRLGDERYSIPAEVVAAEGSRLRCLPLGHLTGLAAGAPAVAVRRPSDVPVGPALLGRVVD 117 Query: 119 VNFDKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIV 177 P + + PLHA M RG L R LD P GRGQR I Sbjct: 118 ALG-NPLDGGPPLHTAPRGPLHATPPPAMTRGRVDAPLSLGVRALDTLVPAGRGQRFGIF 176 Query: 178 APPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVAS 230 A GK+ LL IA+ + + V ++ L+ ER EV E L + VV + Sbjct: 177 AGSGVGKSSLLSMIARGTSAD----VSVLALVGERGREVREFLEDDLGPEGLARSVVVIA 232 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGV 289 T DE ++ + A+ + D ++++DS+TR+A A + + G+ T G Sbjct: 233 TSDEAPVLRLRASLTATTVAESFRDMGADCVLMMDSLTRVAMAQREIGLSVGEPPATRGY 292 Query: 290 DANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKI 349 + R A GS+T I T L+D G +E I + + + + L R++ Sbjct: 293 PPSVFALMPRLLERAG-PGVTGSITGIYTVLVD-GDDHNEPIADNARSILDGHVVLDRRL 350 Query: 350 AEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKT- 408 A FP ID S +R +TT E+ LR+++ + LI+ A Sbjct: 351 ATAGHFPTIDVLESVSRVAGRVTTPEQKSAATALRRVMAAHRDAKE---LIDVGAYQPGA 407 Query: 409 NDDFFEMMKR 418 N + + + Sbjct: 408 NPEVDAAVAQ 417 >UniRef50_C1F987 Flagellar protein export ATPase FliI n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F987_ACIC5 Length = 450 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 73/339 (21%), Positives = 132/339 (38%), Gaps = 19/339 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 +R GDT++ P + +V P + + + PL ++R Sbjct: 88 GIRYGDTVAALGVQPSIDVGEGLIGRVLNALGQ-PLDRAGSLRATDALPLERAVPHPLDR 146 Query: 150 GNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 R +D +GRGQR I GK+ L+ + ++ + V++V L Sbjct: 147 TPIRMPLGTGIRAIDSMLTVGRGQRVGIFGGSGVGKSTLIGMMTRNSDAD----VIVVGL 202 Query: 209 IDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 + ER EV E + VV ST D+ ++ A A+ + K V+ Sbjct: 203 VGERGREVGEFLEDSLGPEGRKRSVVVVSTSDQTPLLRMRAALAATTVAEYFADQGKHVL 262 Query: 262 ILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 ++LDS+TR A A V A+G+ T G + R + A E GS+T T L Sbjct: 263 LVLDSLTRFAMAAREVGLAAGEPPTAKGYTPSVFSRLAQLVERAGQFRE-GSITAFYTVL 321 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 ++ G + + + + + + LSR +A + +P I+ S +R + + E Sbjct: 322 ME-GDDQQDTLVDAVRSYLDGHVVLSRTLASQGWYPPIELLDSISRLMPSVASGEHRGAA 380 Query: 381 WILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS 419 +R+++ + L+ A D + R+ Sbjct: 381 ATVRRMLAAYARSED---LVRIGAYKAGTDPELDDALRT 416 >UniRef50_B7AW25 ATP synthase subunit alpha n=10 Tax=Bacteria RepID=B7AW25_9BACE Length = 684 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 57/364 (15%), Positives = 125/364 (34%), Gaps = 34/364 (9%) Query: 54 VLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFAL 113 V ++ +D G + + + + + + + GD G+I Sbjct: 237 VQDVRRDEIGVILFGRDTEIKEGTRVVRTG---KMAGIPVGDAFKGRIINAL-------- 285 Query: 114 LKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQ 172 +P + I P+ + ++R + S + +D PIGRGQ Sbjct: 286 --------GEPLDGEGDIEQAGFRPIECPAPSIVDRKSVSVPMETGILSIDSMFPIGRGQ 337 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ-------RLVKG 225 R LI+ + GKT + + + D V + + I ++ + ++ + Sbjct: 338 RELIIGDRQTGKTSIAMDTIINQ--KGKDVVCIYVAIGQKASTIAKLVNTLKKNDAMDYT 395 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 +V++T +PA A+ + KDV+I+ D +++ A AY + + Sbjct: 396 IIVSATASDPAPLQYIAPYSGTALAEYFMYQGKDVLIVYDDLSKHAVAYRAISLLLERSP 455 Query: 286 TG-GVDANALHRPKRFFGAARNV---EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNM 341 + + R + + GGS+T + G + I + Sbjct: 456 GREAYPGDVFYLHSRLLERSSRLTAEAGGGSITALPIIETQAG-DVSAYIPTNVISITDG 514 Query: 342 ELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLIN 401 ++ L ++ PA++ S +R T+ + +R + E++ + Sbjct: 515 QIFLESELFFAGQRPAVNVGLSVSRVGGAAQTKAMKKASGSIRIDLAQYREMEVFTQFSS 574 Query: 402 KLAM 405 L Sbjct: 575 DLDE 578 >UniRef50_A7HV56 Flagellar protein export ATPase FliI n=8 Tax=Rhizobiales RepID=A7HV56_PARL1 Length = 445 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 87/414 (21%), Positives = 156/414 (37%), Gaps = 39/414 (9%) Query: 14 LITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGV---LEILQDGFGFLRSADS 70 L +G +++ R + +I + + GV L + + Sbjct: 5 LAEIGALADVKHYGR------VVSIQGLMVEVAGPLHAMGVGSRLNVSNRAGEEVICEVV 58 Query: 71 SYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFA----LLKVNEVNFDKPEN 126 + + F G + K E + L +V +P + Sbjct: 59 GFRDN-------KALCLPFGALAGIGVGCKAVLSSEEPHVYPSSAWLGRVVNAMG-EPMD 110 Query: 127 ARNKILFENLTPL--HANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGK 184 + I L + + DL R L+ + RGQR I A GK Sbjct: 111 GKGPIAQGAQPYLLRNMPPPAHTRQRVRGKIDLGVRALNTFTTCCRGQRMGIFAGSGVGK 170 Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPAS 237 ++LL +A++ A + V ++ LI ER EV E L + VV +T DEPA Sbjct: 171 SVLLSMLARNTACD----VSVIGLIGERGREVQEFIEDDLGPEGLARSVVVVATSDEPAL 226 Query: 238 RHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHR 296 Q A + + A+ + ++V+ ++DS+TR A A + ++G+ + G Sbjct: 227 MRRQAAYLTLSLAEYFRDRDQNVLCMMDSVTRFAVAQREIGLSTGEPPTSKGYTPTVFAE 286 Query: 297 PKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 356 + A G++T + T L+D G +E + + + + + + R IAE+ +P Sbjct: 287 LPKLLERAGPGTGSGNITGLFTVLVD-GDDHNEPVADAVRSILDGHIVMERSIAERGRYP 345 Query: 357 AIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 AI+ +S +R EE + + R ++ D ME LI A +D Sbjct: 346 AINVLKSVSRTMPDCNEAEENELIRRARALMATY---DDMEELIRLGAYRPGSD 396 >UniRef50_Q1D9L1 ATPase, FliI/YscN family n=2 Tax=Cystobacterineae RepID=Q1D9L1_MYXXD Length = 437 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 81/396 (20%), Positives = 154/396 (38%), Gaps = 25/396 (6%) Query: 13 ELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSY 72 +LI + + + R ++ I+K G+ VL I G +++ + Sbjct: 10 DLIKEAQVVRVRG----RVTELTGLIIKASV--PNVRVGELVL-IKSRNRGAVKAEVVGF 62 Query: 73 LAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKIL 132 D++ + P + + +P L +V + + Sbjct: 63 --QGDEVMLMP-LGELHGIGPDSEVIPTGKPLSIKCGEALLGRVLNGIGEPMDGHPLPEE 119 Query: 133 FENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNI 191 + + R L R +D +G GQR + A GK+ L+ I Sbjct: 120 GLIDWSVDRDCPDPFTRQRIERPLPLGVRCIDGLLTVGEGQRVGLFAGSGVGKSTLMGQI 179 Query: 192 AQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAE 244 A++ + + +V LI ER EV E + + +V +T D+P+ ++ A Sbjct: 180 ARNTKAD----LCVVALIGERGREVREFIEDAMGEEGMKRSVLVCATSDQPSLVRLRAAY 235 Query: 245 MVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGA 303 + A+ E +V+ +LD++TRLARA + A G+ G + R Sbjct: 236 VATAIAEYFRERGGNVLFMLDTVTRLARAQREIGLAVGEPPARQGYPPSVFSMLPRILER 295 Query: 304 ARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRS 363 N E+ G T I T L+ G M+E I +E +G + L+R + E+ +PA+D S Sbjct: 296 TGNSEK-GKCTAIYTCLV-AGGDMEEPIADEVRGILDGHFILNRALGERNQWPAMDVLAS 353 Query: 364 GTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 +R + +++ + LR+++ + + L Sbjct: 354 LSRVMSGIVSKDHKKAAGRLRELLSTYEKQRDLILL 389 >UniRef50_Q2ST36 ATP synthase subunit alpha n=4 Tax=Mycoplasma mycoides group RepID=ATPA_MYCCT Length = 525 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 130/365 (35%), Gaps = 34/365 (9%) Query: 54 VLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFAL 113 VL + + G + D + + D + + + GD + G++ Sbjct: 63 VLNLEEGAVGSVILGDETLIREGDIVKRTNKVVET---PVGDALLGRVIDAL-------- 111 Query: 114 LKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQ 172 +P + I F P+ + M R + S + +D A PIG+GQ Sbjct: 112 --------GQPIDNLGPIDFTKTRPVERVATSVMARKSVSQPLETGILAIDSAIPIGKGQ 163 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV-------TEMQRLVKG 225 R LI+ + GKT + + + + + + + I ++ + + + Sbjct: 164 RELIIGDRQTGKTAIAIDAIINQ--KNRNVKCIYVAIGQKDSTIVQVVEKFKKYGAMDYT 221 Query: 226 EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 285 VV + +PAS I A+ +E DV+I+ D +T+ A +Y + + Sbjct: 222 VVVNAGASQPASLQYLSPYTGITIAEEWMESGNDVLIVYDDLTKHAVSYREMSLLLRRPP 281 Query: 286 TG-GVDANALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNM 341 + + R A V GGS+T + G + I + Sbjct: 282 GREAYPGDVFYLHSRLLERAARVNENYGGGSITALPIIETQAG-DISAYIPTNVISITDG 340 Query: 342 ELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLIN 401 ++ LS ++ + V PA+D S +R + Q L+ + E+++ + Sbjct: 341 QIFLSSELFNQGVRPAVDIGPSVSRVGSAAQIKSIKQVSGTLKLELAQYYELESFAKFGS 400 Query: 402 KLAMT 406 L T Sbjct: 401 DLDET 405 >UniRef50_Q1K2D4 ATP synthase subunit alpha n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2D4_DESAC Length = 506 Score = 266 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 69/369 (18%), Positives = 130/369 (35%), Gaps = 35/369 (9%) Query: 51 GDGV-LEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER 109 +G+ + D G + D YL D+ S R ++ G+T+ G++ P Sbjct: 63 IEGIAFNVDADEVGVVLLGDYQYLHTGDEARRSG---RVMDVPVGETLIGRVINPL---- 115 Query: 110 YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN-GSTEDLTARVLDLASPI 168 P + + + ++ P+ + MER + +V+D PI Sbjct: 116 ------------GAPLDQQGPVNNQHRLPIERPAPAIMERAPVTTPLHTGIKVVDALVPI 163 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QR 221 GRGQR LI+ + GKT + + + + + I +R V + Sbjct: 164 GRGQRELILGDRQTGKTAIAIDTILNQKGKN--VRCVYCAIGQRSAAVARVIAELERRGA 221 Query: 222 LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPAS 281 + V+ + ++P A+ + DV+I+ D +T ARAY + Sbjct: 222 MDYTVVMVAEGNDPPGLSYIAPYAATTIAEEFMRQGDDVLIVYDDLTHHARAYRELSLLL 281 Query: 282 GKVLTG-GVDANALHRPKRFFGAARNV---EEGGSLTIIATALIDTGSKMDEVIYEEFKG 337 + + + R A ++ GGSLT + + M I Sbjct: 282 RRPPGREAFPGDIFYIHSRLLERATHLHPDHGGGSLTALPIIETEA-QNMSAYIPTNLIS 340 Query: 338 TGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAME 397 + +L+LS + E PAID +S +R + + L+ E++ Sbjct: 341 ITDGQLYLSPTLFELGALPAIDVGKSVSRVGGKAQLEAYRRIAGNLKLAYAQFEELETFA 400 Query: 398 FLINKLAMT 406 +L + Sbjct: 401 RFGTRLDES 409 >UniRef50_C5CYE4 ATPase, FliI/YscN family n=1 Tax=Variovorax paradoxus S110 RepID=C5CYE4_VARPS Length = 460 Score = 266 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 141/341 (41%), Gaps = 19/341 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 + G + + G L +V + F +P + K + PL A M+R Sbjct: 86 GIAAGCEVHALGADSQIGVGPAMLGRVID-GFGEPLDGLPKPVAIQRRPLKAAPINPMQR 144 Query: 150 GNGST-EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY----NHPDCVL 204 + R +D +G+GQR I A GK+ LL +A+ + + + Sbjct: 145 PPIRRILETGVRAIDGLLTLGQGQRIGIFAGSGVGKSTLLGLLARHVKAQGGADGSGGIN 204 Query: 205 MVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK 257 ++ LI ER EV E L + VV +T D+PA ++ A + A+ + Sbjct: 205 VIALIGERGREVREFIEKQLGPEGLARSVVVVATSDQPALARLRAAYAALSIAEYFRDEG 264 Query: 258 KDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTII 316 ++V++ +DSITR A A V ++G+ T G + GGS+T + Sbjct: 265 RNVLLTMDSITRFAMARREVGLSAGEPPTARGYTPSVFAELPELCERCGMAPGGGSITAL 324 Query: 317 ATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEE 376 T L++ G ++E + + + + + LSR++A + +PAID +S +R L + + Sbjct: 325 LTVLVE-GDDLNEPVSDALRAILDGHIVLSRQLAHRGHYPAIDVLKSVSRLMPELADEAQ 383 Query: 377 LQKMWILRKIIHPMGEIDAMEFLINKLAMTKT-NDDFFEMM 416 + + ++ +I+ A K N + + Sbjct: 384 RSLAVA---AMQHLAVLERNRQMIDIGAYEKGANAELDRAI 421 >UniRef50_D2R528 ATPase, FliI/YscN family n=4 Tax=Planctomycetaceae RepID=D2R528_9PLAN Length = 455 Score = 266 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 79/347 (22%), Positives = 147/347 (42%), Gaps = 24/347 (6%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 +R G+ ++ L +V + + + + + PL R Sbjct: 74 GIRQGNRVTLARSTRSVRVGNQLLGRVIDARGR-VIDNKPAPVLADRVPLDRKPPAATSR 132 Query: 150 GNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 +T R +D G GQR + A GK++ L +A+ + + V+++ L Sbjct: 133 PRIDTTFSTGVRAIDGLLTCGVGQRIGVFAGSGVGKSVTLGMMAKYSSAD----VIVIGL 188 Query: 209 IDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ER EV E L + V +T DEPA VQ A A+ + K+V+ Sbjct: 189 IGERGREVNEFLERDLGPTGLARSVCVVATSDEPAIMRVQAASTATAVAEYFRDQGKNVL 248 Query: 262 ILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 +++DS+TR A A + A+G+ T G + R A + GS+T I + L Sbjct: 249 LMMDSLTRFALAQREIGLAAGEPPTTRGYPPSVFALLPRLVERAGRTPQ-GSITAIYSVL 307 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 ++ G ++E + + +G + + LSRK+A + +PAI+ S +R +TT ++ Sbjct: 308 VE-GDDVNEPVSDTVRGLLDGHVILSRKLAAQSHYPAIEVLGSISRLFTEITTPQQRSAA 366 Query: 381 WILRKIIHPMGEIDAMEFL-INKLAMTKTND-------DFFEMMKRS 419 I+R+++ E + + + + T D + + +K+S Sbjct: 367 AIVRELLSAYREHEDLISIGAYRTGANPTVDTAIAMRGEILQFLKQS 413 >UniRef50_C6N705 Flagellar protein export ATPase FliI n=1 Tax=Legionella drancourtii LLAP12 RepID=C6N705_9GAMM Length = 430 Score = 266 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 70/330 (21%), Positives = 128/330 (38%), Gaps = 18/330 (5%) Query: 94 GDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER-GNG 152 G + L V + F +P + + K+ + + R Sbjct: 75 GYKVRATGNHLSIAVGEALLGHVVDA-FAQPIDEQIKLTYTQRVLTKNKKINPLTRMPIN 133 Query: 153 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 212 + +D P+G+GQR I A GK+ LL + Q++ + ++ LI ER Sbjct: 134 ERLTTGIQAIDSLLPLGKGQRIGIFAGSGVGKSTLLGTMVQNLQSE----INVIALIGER 189 Query: 213 PEEVTEMQ-------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLD 265 EV + L K +V S DE A Q A+ + K V++ +D Sbjct: 190 GREVNDFIVNHLDEATLKKSVLVVSCSDESALMRRQAVYTATAIAEYFCQQSKQVMLFMD 249 Query: 266 SITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTG 324 SITR A A + + G+ T G + N +E GS++ + T L++ G Sbjct: 250 SITRFAMAQREISLSLGEPPTARGYTPSVFALLPGIIERTGNFKEQGSISALYTVLVE-G 308 Query: 325 SKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILR 384 +E + + + + + L+R++A++ +PAI +S +R + + EE Q + + Sbjct: 309 DDFNEPLADHMRALLDGHIVLTRELAQRGHYPAISILQSVSRLAKHIVAPEEQQLINQII 368 Query: 385 KIIHPMGEIDAMEFLINKLAMTKTNDDFFE 414 + + LI A N+ + Sbjct: 369 ATLSLYQQNKD---LIEVGAYKPGNNALLD 395 >UniRef50_A5GCR1 H+-transporting two-sector ATPase, alpha/beta subunit, central region n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5GCR1_GEOUR Length = 524 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 77/458 (16%), Positives = 155/458 (33%), Gaps = 64/458 (13%) Query: 5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQ----------------HAKSGED 48 +LK + +++ +GE M + + R+ ++ + + + Sbjct: 4 DLKGLKLYDMVRVGEAMLIGEVVRLEQERAVVQVYEDTRGLGVHEPAKGLDTPLTARLGP 63 Query: 49 IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNL----RTGDTISG--KIR 102 G+ + LQ L ++ D+Y R + R GD + I Sbjct: 64 GLLSGMFDGLQRPMERLFRQCGPFICSGSDLY-PLELERPWRFFPLRRAGDEVVASDIIG 122 Query: 103 PPKEGERYFAL-----LKVNEVNFDKPENARNKILFENL--------TPLHANSRLRMER 149 +EG L + + + + F + P+ R + Sbjct: 123 YVEEGAFRHPLTAGASGAIARLEDGEFNLTQPVGAFADGREITAIREWPVRKPRPYRKKL 182 Query: 150 GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI 209 R +D P+ RG + GKT+L Q++A+ A + +++ + Sbjct: 183 SPDLPLVTGQRAVDFLFPLARGGAAVFPGGFGTGKTVLEQSVAKFSAVD----LVVYVGC 238 Query: 210 DERPEEVTEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 ER E+ E+ + + VV +T + P + + A+ + Sbjct: 239 GERGNEMAELLDEFAALSDPWTGKPLMDRTIVVVNTSNMPVAAREASIYTAVTMAEYYRD 298 Query: 256 HKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVE----EG 310 V++L DSI+R A A + + ++ G R FF A VE Sbjct: 299 MGYHVLLLADSISRWAEALREISSSLEEMPGEEGYPTYLASRLSGFFERAGVVETMNCGI 358 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEEL 370 GSL++I + G E + + T L +A +R FPAI++ +S + E Sbjct: 359 GSLSMILSV-SPPGGDFTEPVTQACLRTAGAFFMLDTALAHRRHFPAINWFQSYSLYERN 417 Query: 371 LTTQEELQKMWI----LRKIIHPMGEIDAMEFLINKLA 404 + + LR+ + +++ + + Sbjct: 418 IVRHFTAEISPRWEELLRRCREMLQREESLREVAEIVG 455 >UniRef50_B1AIC1 ATP synthase subunit alpha n=43 Tax=Bacteria RepID=ATPA_UREP2 Length = 799 Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 64/423 (15%), Positives = 147/423 (34%), Gaps = 42/423 (9%) Query: 3 LTELKNTPVSELITLGENMGLENLARMR-----KQDIIFAILKQHAKSGEDIFGDGVLEI 57 ++++K+ + + + + N+ + + +L + + + G L + Sbjct: 10 ISDIKS-QIKKFSEKALTLEVGNVISLGDGIVLVDGLDNVMLNEIVRFENGVEGM-ALNL 67 Query: 58 LQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVN 117 +D G + D S + D +Y + + + GD + G++ Sbjct: 68 EEDAVGVVLLGDYSNIKEGDRVYRTKRIVE---VPVGDVMLGRVVDAL------------ 112 Query: 118 EVNFDKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLI 176 K + + I+ + + + M+R + + +D PIG+GQR LI Sbjct: 113 ----GKAVDNKGNIVANKFSVIEKIAPGVMDRKSVHQPLETGILSIDAMFPIGKGQRELI 168 Query: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVA 229 + + GKT + + + + + + I ++ + + R + VV Sbjct: 169 IGDRQTGKTTIAIDAIINQKGRN--VNCVYVAIGQKNSTIANVVRELEAHGAMEYTTVVT 226 Query: 230 STFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-G 288 + E + + A+ + KDV+I+ D +++ A AY T+ + Sbjct: 227 ANASELPALQYIAPFTGVTIAEEWMHQGKDVLIVYDDLSKHAIAYRTLSLLLRRPPGREA 286 Query: 289 VDANALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 + + R A ++ GS+T + G + I + ++ + Sbjct: 287 YPGDVFYLHSRLLERACKLKDELGAGSITALPIIETQAG-DISAYIPTNVISITDGQIFM 345 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL-INKLA 404 + PAID +S +R + Q L+ + E++A + Sbjct: 346 MTSLFNAGQRPAIDAGQSVSRVGSAAQIKSVKQTGASLKLELANYRELEAFSQFGSDLDD 405 Query: 405 MTK 407 TK Sbjct: 406 ETK 408 >UniRef50_C7R0J8 ATPase, FliI/YscN family n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R0J8_JONDD Length = 446 Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 76/337 (22%), Positives = 132/337 (39%), Gaps = 17/337 (5%) Query: 91 LRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERG 150 LR G + + L +V + + + + + A + + R Sbjct: 78 LRAGAQVRHTGGGIRVPVGSGLLGRVIDPLGEPIDGLGPLTHVD-FVDVDAAAPHPLARQ 136 Query: 151 NG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI 209 L RV+D + +GRGQR + A GK+ LL IA+ V ++ LI Sbjct: 137 RVSEPLALGVRVMDTLTSVGRGQRMGLFAGSGVGKSTLLSMIARGTDAQ----VSVIALI 192 Query: 210 DERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 ER EV E L + VV +T D+PA + A A+ L + DV++ Sbjct: 193 GERGREVREFLEDDLGPEGLARSIVVIATSDQPALMRQRAAFTATRIAQWLAQMGNDVVL 252 Query: 263 LLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALI 321 ++DS+TR+A A + + G+ T G + A + E+ G++T + T L+ Sbjct: 253 MMDSLTRVAMAQREIGLSVGEPPATRGYPPSTFSVLANLLERAGSAEQ-GTVTGLYTVLV 311 Query: 322 DTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMW 381 D G +E I + + + + L RK+A + +PAID S +R + Sbjct: 312 D-GDDHNEPIADAARSILDGHVVLDRKLAVRGHYPAIDALASISRVASKVNDPANQAHAD 370 Query: 382 ILRKIIHPMGEIDAMEFL-INKLAMTKTNDDFFEMMK 417 LR+ + + + + T D + Sbjct: 371 TLRRFMAAKAGVQDLIDIGAYAAGSNPTVDAALAQAQ 407 >UniRef50_B0SE01 Endoflagellar biosynthesis/type III secretory pathway ATPase n=6 Tax=Leptospira RepID=B0SE01_LEPBA Length = 454 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 72/312 (23%), Positives = 129/312 (41%), Gaps = 16/312 (5%) Query: 97 ISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGST-E 155 + R L +V P + + ++ + ++R + Sbjct: 94 VFSSGRQITLNAGPELLGRVLNGLGK-PIDNKGILITKEERASEPRFLNPLDRPPITDIL 152 Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 + R +D +GRGQR I + GK+ LL IA+ + V +V LI ER E Sbjct: 153 ETGVRAIDGMLTVGRGQRIGIFSGSGVGKSSLLGMIARYTNAD----VNVVALIGERGRE 208 Query: 216 VTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 268 V E + L + V +T D V A + A+ E V + +DS+T Sbjct: 209 VNEFLHVELGKEALARSVVFVATSDSSKMEQVSCANLACSAAEYFREKGMSVNLYMDSLT 268 Query: 269 RLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKM 327 R A A + G+ + T G ++ + + A GGS+T T L D M Sbjct: 269 RYAEALRELSI--GEPVVTKGYASSVFSKMAKLVERAGTSHNGGSITGFYTVLTDAEDDM 326 Query: 328 DEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKII 387 D+++ ++ +G + + L+RK+AE+ +PAID S +R + + ++ + I+R++I Sbjct: 327 DDIVADKVRGFIDGHIVLTRKLAEQSHYPAIDVPASLSRLMQKIVNEDHYMRASIVRELI 386 Query: 388 HPMGEIDAMEFL 399 + + L Sbjct: 387 SKYKNSEDIILL 398 >UniRef50_D1BD12 Type III secretion system ATPase, FliI/YscN n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BD12_SANKS Length = 459 Score = 264 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 80/335 (23%), Positives = 138/335 (41%), Gaps = 19/335 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 +R G + L +V + P + R ++ PL + +ER Sbjct: 95 GIRPGLQARTTGGALQVPVGSGLLGRVVDGLGR-PLDGRGPLVGTTTVPLDGRAPHPLER 153 Query: 150 GNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 L R LD + +GRGQR + A GK+ LL +A+ V ++ L Sbjct: 154 QRVAQPLTLGVRTLDTLTTVGRGQRMGLFAGSGVGKSTLLSMVARGTDA----AVSVIAL 209 Query: 209 IDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 + ER EV E L + VV +T DEPA ++ A + A+ E +DV+ Sbjct: 210 VGERGREVREFLEDDLGPEGLARSVVVVATSDEPALVRLRAAFVATRIAESFRESGEDVV 269 Query: 262 ILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 +++DS+TR+A A + + G+ T G + A GS+T I T L Sbjct: 270 LMMDSLTRVAMAQREIGLSVGEPPATRGYPPSTFSVLAELLERAGTSAR-GSVTGIYTVL 328 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 +D G +E I + + + + L R++A FP+ID S +R +T+ + Sbjct: 329 VD-GDDHNEPIADAARSILDGHVVLDRRLAVAGHFPSIDALGSISRVATRVTSAAQRADA 387 Query: 381 WILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEM 415 LRK++ + L++ A + ++ + Sbjct: 388 TALRKVMSARRAVQD---LVDVGAYVQGSNPLVDA 419 >UniRef50_C0QS16 ATP synthase subunit alpha n=2 Tax=Bacteria RepID=C0QS16_PERMH Length = 495 Score = 264 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 64/397 (16%), Positives = 139/397 (35%), Gaps = 38/397 (9%) Query: 20 NMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDI 79 G+ ++ + + + +++ V++I +D + + + Sbjct: 37 EEGIAVISGLP-NAMFYEVVRFSNNLKGI-----VIDIQEDKVTAVILEKEENVEINTPV 90 Query: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPL 139 Y + + ++ D + G+I P KP + + + P+ Sbjct: 91 YRTGYIV---SVPVSDQLLGRIIDPL----------------GKPLDGKPPVKTTVYYPV 131 Query: 140 HANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 198 + +R +V+D PIG+GQR LI+ P GKT + + + Sbjct: 132 EREAPALFDRDFVKDQLYTGIKVIDCMFPIGKGQRELILGDPSTGKTSIAVDTIINQ--K 189 Query: 199 HPDCVLMVLLIDERPEEVTEMQ-------RLVKGEVVASTFDEPASRHVQVAEMVIEKAK 251 D + + + I +R + V ++ + +V++T D A+ Sbjct: 190 DKDVICIYVSIGQRKQSVLDVYTTLKKYGAMDYTVIVSATSDSYPGLQFLSPYSGTAIAE 249 Query: 252 RLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEG 310 ++ KDV+I+ D +T+ A AY ++ + + + R A +++G Sbjct: 250 YFLDKNKDVLIVYDDLTKHAFAYQSLSLLLKRPPGREAFPGDIFYIHSRLLERACKIKDG 309 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEEL 370 GS+T + G ++ I + +++L + PA+D RS +R Sbjct: 310 GSITALPVVETQAG-RISSYIPTNVISITDGQIYLDSNLFNINQRPAVDVGRSVSRIGGK 368 Query: 371 LTTQEELQKMWILRKIIHPMGEIDAMEFL-INKLAMT 406 + LR E++ L + T Sbjct: 369 TQIPALKEVAEFLRLYYAQFLEVEIFTKLGVKVFGET 405 >UniRef50_P55717 Probable ATP synthase y4yI n=30 Tax=Bacteria RepID=Y4YI_RHISN Length = 451 Score = 263 bits (673), Expect = 7e-69, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 135/322 (41%), Gaps = 21/322 (6%) Query: 98 SGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGS-TED 156 +G++R G L +V + P + + ++ + PLH + M R Sbjct: 103 TGRMREVPIG--PDLLGRVIDSRCR-PLDGKGEVKTTEVRPLHGRAPNPMTRRMVERPFP 159 Query: 157 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV 216 L R LD G GQR I P GK+ L+ I + A + V++V LI ER EV Sbjct: 160 LGVRALDGLLTCGEGQRIGIYGEPGGGKSTLISQIVKGAAAD----VVIVALIGERGREV 215 Query: 217 TEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 269 E GE VV T D A+ Q A M A+ E V +LLDS+TR Sbjct: 216 REFVERHLGEEGLRRAIVVVETSDRSATERAQCAPMATALAEYFREQGLRVALLLDSLTR 275 Query: 270 LARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMD 328 RA + A+G+ T G + A E GS+T T L++ G Sbjct: 276 FCRAMREIGLAAGEPPTRRGFPPSVFAALPGLLERAGLGER-GSITAFYTVLVE-GDGTG 333 Query: 329 EVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIH 388 + I EE +G + + LSR +A + FPAID +S +R + + ++ + R ++ Sbjct: 334 DPIAEESRGILDGHIVLSRALAARSHFPAIDVLQSRSRVMDAVVSETHRKAASFFRDLLA 393 Query: 389 PMGEIDAMEFLINKLAMTKTND 410 E + FLIN + D Sbjct: 394 RYAECE---FLINVGEYKQGGD 412 >UniRef50_P0A1C0 Probable ATP synthase spaL n=121 Tax=Proteobacteria RepID=SPAL_SALTI Length = 431 Score = 263 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 135/339 (39%), Gaps = 20/339 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNK--ILFENLTPLHANSRLRM 147 L + R Y L V + E + + E A Sbjct: 69 GLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVERFTPEVAPISEERVIDVAPPSYAS 128 Query: 148 ERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207 G R +D G GQR I A GKTML+ + + + V ++ Sbjct: 129 RVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGCGKTMLMHMLIEQTEAD----VFVIG 184 Query: 208 LIDERPEEVTEMQRLVKG-------EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260 LI ER EVTE +++ +V +T D P+ A++ A+ + K V Sbjct: 185 LIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRDQGKRV 244 Query: 261 IILLDSITRLARAYNTVVPASGK-VLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATA 319 ++ +DS+TR ARA V ASG+ G A+ R E GS+T T Sbjct: 245 VLFIDSMTRYARALRDVALASGERPARRGYPASVFDNLPRLLERPGATSE-GSITAFYTV 303 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK 379 L+++ + + + +E + + L+LSRK+A + +PAID +S +R +TT ++ Sbjct: 304 LLESEEE-ADPMADEIRSILDGHLYLSRKLAGQGHYPAIDVLKSVSRVFGQVTTPTHAEQ 362 Query: 380 MWILRKIIHPMGEIDAMEFLINKLAMTKT-NDDFFEMMK 417 +RK++ + + ++ I+ N D M+ Sbjct: 363 ASAVRKLMTRL---EELQLFIDLGEYRPGENIDNDRAMQ 398 >UniRef50_C8WBT8 ATPase, FliI/YscN family n=7 Tax=Sphingomonadales RepID=C8WBT8_ZYMMN Length = 443 Score = 261 bits (668), Expect = 3e-68, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 136/335 (40%), Gaps = 18/335 (5%) Query: 94 GDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN-G 152 G + + L +V +P + I+ + PL + RG Sbjct: 86 GARVEPDRQLSIVHVGDGLLGRVIGALG-EPLDNLGPIITDEYWPLVGKMGNPLNRGRVT 144 Query: 153 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 212 D+ R ++ G GQR I+A GK++L+ + + V++ LI ER Sbjct: 145 QPFDMGVRAINALLTAGVGQRIAIMAGSGVGKSVLMGQMIAGAKAD----VIVTGLIGER 200 Query: 213 PEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLD 265 EVT+ K VVA D P ++ A A+ K+V++L+D Sbjct: 201 SREVTDFVETKISDDVRPKSVVVAVPADHPPVLRLRAAMRATAIAEYFRAKGKNVLLLID 260 Query: 266 SITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAAR-NVEEGGSLTIIATALIDT 323 S+TR+A A V + G+ T G +AL R A ++ G++T I T L D Sbjct: 261 SLTRIAHAQREVGLSLGEPPTIKGYPPSALGLIPRLVERAGIDIHSKGAITAIYTVLAD- 319 Query: 324 GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWIL 383 G D+ I + + + + LSR +AE+ VFPAID +S +R + + Q L Sbjct: 320 GDDPDDPIVDTARAIVDGHIILSRSLAEQGVFPAIDLGKSLSRVMSDIISPGHRQAAAHL 379 Query: 384 RKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 R++ E + + + T + E + R Sbjct: 380 RRLWSVYEENRDLILMGAYRSGT--DASIDEAINR 412 >UniRef50_O34171 Flagellum-specific ATP synthase n=19 Tax=Alphaproteobacteria RepID=FLII_AGRT5 Length = 473 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 127/315 (40%), Gaps = 18/315 (5%) Query: 114 LKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQ 172 + + + + N+ M R R +D+ SP+ GQ Sbjct: 122 GRTINALGEPIDGQGPLASGIVRRSISNNAPPSMTRKRVETPFKTGVRAIDIFSPLCLGQ 181 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR------LVKGE 226 R I A GK+ LL +A++ A++ +++ L+ ER EV E + K Sbjct: 182 RLGIFAGSGVGKSTLLSMLAKADAFDK----VVIALVGERGREVREFIEDTMGDNMSKSV 237 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL- 285 V +T DE + A+ + +V++++DS+TR A A V ASG+ Sbjct: 238 AVVATSDESPMLRKMAPLSAVTIAEHFRDQGDNVLLIIDSVTRFAHAIREVAVASGEPPV 297 Query: 286 TGGVDANALHRPKRFFGAAR-NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELH 344 G A+ R A E G++T I + L+D G ++ I + +G + + Sbjct: 298 ARGYPASVFTELPRLLERAGPGAEGTGTITAIVSILVD-GDNHNDPIADSTRGILDGHIV 356 Query: 345 LSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 L R +AE+ +P I+ S +R + T ++ + + L+ ++H E + + Sbjct: 357 LDRSLAEEGRYPPINPLASISRLAKKAWTPDQEKLVSRLKALVHRFEETRDLRLI---GG 413 Query: 405 MTKTND-DFFEMMKR 418 D D +K+ Sbjct: 414 YRPGTDPDLDMAVKQ 428 >UniRef50_B8J143 ATPase FliI/YscN n=13 Tax=cellular organisms RepID=B8J143_DESDA Length = 504 Score = 261 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 69/293 (23%), Positives = 134/293 (45%), Gaps = 19/293 (6%) Query: 135 NLTPLHANSRLRMERGNGST-EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 193 L P++A+ ++R + D+ R ++ +G+GQR I+A GK+ L+ +A+ Sbjct: 162 ELVPIYADPPSPLQRPRITDILDVGVRSVNSLLTLGKGQRVGIMAGSGVGKSTLMGMMAR 221 Query: 194 SIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMV 246 + V ++ LI ER EV E + + +V +T D+ ++ A Sbjct: 222 YTRAD----VNVIALIGERGREVVEFMERDLGPEGMARSVLVIATSDQSPLVRMRAAYAA 277 Query: 247 IEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAAR 305 A+ + DV++++DS+TR A A V A G+ T G + + A Sbjct: 278 TGVAEYFRDKGMDVLLMMDSVTRFAMAAREVGLAVGEPPTTKGYTPTVFAQLPKLLERAG 337 Query: 306 NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT 365 G++T I T L+D G +E I + + + + L+R +A++ FPAID RS + Sbjct: 338 RSAR-GTITGIYTVLVD-GDDFNEPIADAVRSILDGHIVLTRDLADQGHFPAIDVLRSIS 395 Query: 366 RKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK-TNDDFFEMMK 417 R + ++++ ++ + + +++ M +N A K TN + ++ Sbjct: 396 RLRSDICDRQDVLSGRVVTRNMSTFRKVEDM---VNIGAYAKGTNAEIDAAIE 445 >UniRef50_Q21Z99 ATP synthase subunit alpha 2 n=29 Tax=cellular organisms RepID=ATPA2_RHOFD Length = 534 Score = 260 bits (665), Expect = 6e-68, Method: Composition-based stats. Identities = 65/366 (17%), Positives = 128/366 (34%), Gaps = 34/366 (9%) Query: 55 LEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALL 114 + + G + + +L D++ + R ++ GD + G++ P Sbjct: 70 FNVDEAEIGVVLLGEYWHLHAGDEVDRTG---RVMDVAVGDGLLGRVIDPL--------- 117 Query: 115 KVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQR 173 +P + R + + P+ + M+R + +V+D P+GRGQR Sbjct: 118 -------GRPLDGRGPVASSHRLPIERPASPIMDRAPVTVPLQTGLKVIDALIPVGRGQR 170 Query: 174 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPE-------EVTEMQRLVKGE 226 LI+ + GKT + + + + + + I +R + E + Sbjct: 171 ELILGDRQTGKTAIAIDTILNQQGQN--VLCVYCAIGQRASAVAKVVATLREKGAMDFTT 228 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT 286 VV + ++P A+ +E +DV+I+ D +T+ ARAY + + Sbjct: 229 VVVTEGNDPPGLAYIAPYAATSIAEHFMEAGRDVLIVYDDLTQHARAYRELSLLLRRPPG 288 Query: 287 G-GVDANALHRPKRFFGAA---RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 + + R A R GGSLT + + I + + Sbjct: 289 REAFPGDIFYIHSRLLERATHLRQERGGGSLTALPIIETQA-QNISAYIPTNLISITDGQ 347 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 ++LS + E V PA+D +S +R L+ E++ + Sbjct: 348 IYLSPSLFELGVLPAVDVGKSVSRVGGKAQRTAYRAVAGDLKLAYAQFEELETFARFGAR 407 Query: 403 LAMTKT 408 L T Sbjct: 408 LDENTT 413 >UniRef50_Q2RV20 ATP synthase subunit alpha n=257 Tax=cellular organisms RepID=ATPA_RHORT Length = 510 Score = 260 bits (665), Expect = 6e-68, Method: Composition-based stats. Identities = 60/415 (14%), Positives = 134/415 (32%), Gaps = 49/415 (11%) Query: 12 SELITLGENMGL-ENLARMRKQDIIFAILKQHAKSGEDIFGDGV----LEILQDGFGFLR 66 +E +G+ + + + +AR ++ + A F +GV L + D G + Sbjct: 23 AESAEVGQVLSVGDGIAR------VYGLDNVQAGEM-VEFANGVKGMALNLESDNVGIVI 75 Query: 67 SADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN 126 + + D + + + + ++ G + G++ + + Sbjct: 76 FGEDRGIKEGDVVKRTQTIV---DVPVGKGLLGRVVDGL---------------GNPIDG 117 Query: 127 ARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTM 186 + + E + + + +D PIGRGQR LI+ + GKT Sbjct: 118 KGDLVDVERKRAEVKAPGIIPRKSVHEPVQTGIKAIDSLIPIGRGQRELIIGDRQTGKTA 177 Query: 187 LLQNIAQSIAY-------NHPDCVLMVLLIDERPEEVT-------EMQRLVKGEVVASTF 232 ++ + + + + + + ++ V + L VVA+T Sbjct: 178 VILDTILNQKAVNDKAKDDSEKLFCVYVAVGQKRSTVAQVVKVLADHGALDYTIVVAATA 237 Query: 233 DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDA 291 EPA + ++ +I D +T+ A AY + + Sbjct: 238 SEPAPLQFLAPYTGCTMGEFFRDNGMHAVIFYDDLTKQAVAYRQMSLLLRRPPGREAFPG 297 Query: 292 NALHRPKRFFGAARNV---EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 + + R A + GSLT + + + I + ++ L Sbjct: 298 DVFYLHSRLLERAAKLNDDNGAGSLTALPVIETQA-NDVSAYIPTNVISITDGQIFLETD 356 Query: 349 IAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKL 403 + K + PA++ S +R + Q ++ + E+ A + L Sbjct: 357 LFFKGIRPAVNVGLSVSRVGSSAQIKAMKQVAGSIKLELAQYREMAAFAQFASDL 411 >UniRef50_B3Q296 Type III secretion system ATP synthase protein n=5 Tax=Rhizobium/Agrobacterium group RepID=B3Q296_RHIE6 Length = 439 Score = 260 bits (664), Expect = 7e-68, Method: Composition-based stats. Identities = 84/330 (25%), Positives = 129/330 (39%), Gaps = 20/330 (6%) Query: 96 TISGKIRPPKEGERYFALLKVNEV--NFDKPENARNKILFENLTPLHANSRLRM-ERGNG 152 I R P F L + + N +P L PL+ + R Sbjct: 84 EIVPTGREPAISVGNFLLGAIVDAHGNVLRPSANPAGEDARFLQPLYGQPVNPLSRRPIR 143 Query: 153 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 212 LD G+GQR I P AGK+ L+ I N+ V++ L+ ER Sbjct: 144 QPFTSGIAALDGLLTCGQGQRIGIFGAPGAGKSTLVSQIV----ANNKADVIVCALVGER 199 Query: 213 PEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLD 265 EV E E +V +T D PA + A+ E K V++++D Sbjct: 200 GREVGEFVAGNMPEGVPSNVTLVVATSDRPALERFKAVMTATAIAEYFREQGKHVLLVID 259 Query: 266 SITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTG 324 S+TR+ARA V A+G+ G + + F A N G +T T L++ G Sbjct: 260 SVTRMARALREVGLAAGEPPVRRGFPPSVFAVLPQIFERAGNSAN-GMMTAFYTVLVE-G 317 Query: 325 SKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILR 384 + D+ I EE + + + LS KIA+ FPAID S +R + ++ Q LR Sbjct: 318 EEQDDPIAEETRSLLDGHIVLSDKIAKAGNFPAIDVLASRSRTMSAVVSESHRQAADRLR 377 Query: 385 KIIHPMGEIDAMEFLINKLAMTKTNDDFFE 414 ++ E++ LI + D + Sbjct: 378 ALLALYDEVE---LLIRVGEYRQGRDAAVD 404 >UniRef50_B5YBQ0 ATP synthase subunit alpha n=2 Tax=Dictyoglomus RepID=ATPA_DICT6 Length = 510 Score = 260 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 73/432 (16%), Positives = 142/432 (32%), Gaps = 46/432 (10%) Query: 4 TELKNTPVSELITLGENM-------GLENLARMRKQDIIFAILKQHAKSGEDIFGDG--- 53 E+ P+ ++ + + + + ++L IF G Sbjct: 3 EEVLGLPIEKIQEKIKEYDFSPRISNIGYVKSVGDGVAQVSLLNAAFVGEIVIFESGIQG 62 Query: 54 -VLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFA 112 VL + +D G + Y+ + +Y + + + TG G++ P Sbjct: 63 MVLSLKEDSVGVILFGRDEYVKEGEVVYSTG---KILQVPTGSGFLGRVIDPLGN----- 114 Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRG 171 P + I E P+ + +R R +D PIG G Sbjct: 115 -----------PIDGGGLIFPEAYVPVDNEAPSIFDREPVKEPLYTGIRAIDALIPIGHG 163 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERP-------EEVTEMQRLVK 224 QR LI+ + GKT + + I+ + + + + I ++ + + E L Sbjct: 164 QRELILGDRQTGKTTIAIDTI--ISQRNYGTICIYVAIAQKRTNIARIVQTLREYGALSN 221 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 V+A+ D+P + + + + V+I+ D +T+ A Y V +V Sbjct: 222 TIVIATFPDDPPALRYIAPMAGCAMGEYFMRQGERVLIVYDDLTKHANTYREVALLLRRV 281 Query: 285 LTG-GVDANALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGN 340 + + A + GG+LT + A G ++ I + Sbjct: 282 PGREAYPGDIFYLHSHLLERAAKLSRKLGGGALTALPIAETLAG-EISTYIPTNLISITD 340 Query: 341 MELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDA-MEFL 399 +++L + V PAI+ S +R + Q LR + E +EF Sbjct: 341 GQIYLDTALFNAGVRPAINVGLSVSRVGGSAQPKGMRQVAGRLRLDLAQYREYAMFLEFG 400 Query: 400 INKLAMTKTNDD 411 TK + Sbjct: 401 TELDMATKKKIE 412 >UniRef50_D2BZ50 Type III secretion apparatus H+-transporting two-sector ATPase n=8 Tax=Gammaproteobacteria RepID=D2BZ50_DICD5 Length = 460 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 76/357 (21%), Positives = 137/357 (38%), Gaps = 36/357 (10%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENA-------RNKILFENLTPLHAN 142 + G ++ +P V + E+ + P+ + Sbjct: 90 GIAQGAVVTPLYQPHCVQVSEALFGSVLDGFGRPLEHGSHSAFVEPGSLSASPPMPVIGD 149 Query: 143 SRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD 201 + ER S R +D IG GQR I A GKT LL +A++ P Sbjct: 150 APPPTERPRIASPLPTGLRAIDGLLTIGCGQRVGIFAGAGCGKTTLLAELARNT----PC 205 Query: 202 CVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV 254 ++ LI ER E+ E + +V ST D + + A A+ Sbjct: 206 DAIVFGLIGERGRELREFLDHELDAQLRSRTVLVCSTSDRSSMERARAAFTATAIAEAFR 265 Query: 255 EHKKDVIILLDSITRLARAYNTVVPASGKV-LTGGVDANALHRPKRFFGAARNVEEGGSL 313 K V++++DS+TR ARA + A G+ GG+ + R A G++ Sbjct: 266 ATGKQVLLIIDSLTRFARAQREIGLALGEPQGRGGLPPSVYTLLPRLVERAGQT-RQGAI 324 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTT 373 T + + LI+ S M++ + +E + + + LSR++AE+ +PAID S +R + Sbjct: 325 TALYSVLIEQDS-MNDPVADEVRSLIDGHIVLSRRLAERNHYPAIDVLMSLSRTMSNVVD 383 Query: 374 QEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKT-----------NDDFFEMMKRS 419 E + +R+++ +++ LI NDD ++++ Sbjct: 384 TEHTRNANAVRRLMAAYKQVE---MLIRLGEYQPGHDALTDAAVNANDDINRFLQQA 437 >UniRef50_D1PIS0 ATP synthase subunit alpha n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIS0_9FIRM Length = 679 Score = 258 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 60/405 (14%), Positives = 131/405 (32%), Gaps = 37/405 (9%) Query: 16 TLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAG 75 G + + + + A+ + + +L++ + G + + L Sbjct: 200 ETGRVLEIGD-GIANVSGLRHAVYGERVEFEN-GTAGLILDLRRKRTGVVLLGSAEGLTE 257 Query: 76 PDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFEN 135 + + R ++ G+ + G+ +P + I Sbjct: 258 GSLVRRTG---RPADVPVGEALIGRTVNAL----------------GQPIDGLGPIDCTE 298 Query: 136 LTPLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 194 P+ + + R +D PIGRGQR LI+ + GKT + + + Sbjct: 299 TRPIEHEASGVVSREPVTQPMQTGILAIDAMVPIGRGQRELIIGDRQTGKTSIATDAILN 358 Query: 195 IAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVI 247 D + + + I ++ V + + +V++ E AS Sbjct: 359 QK--GQDMICIYVAIGQKASTVARLRETLKKHGAMEYSIIVSAPAAEGASMQYIAPYAGA 416 Query: 248 EKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARN 306 + + KDV+I+ D +++ A AY T+ + + + R A Sbjct: 417 AMGEYFMSKGKDVLIVYDDLSKHAVAYRTLSLLLRRSPGREAYPGDVFYLHSRLLERACR 476 Query: 307 VE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRS 363 + GGS+T + G + I + +++L + PA++ S Sbjct: 477 LTKEYGGGSMTALPIVETQAG-DVSAYIPTNVISITDGQIYLESGLFFSGQRPAVNVGLS 535 Query: 364 GTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL-INKLAMTK 407 +R T+ + LR + E++ + A T+ Sbjct: 536 VSRVGGAAQTRAIKKTAGTLRIDLARYRELEVFTQFSSDLDAETR 580 >UniRef50_UPI00016C3500 Flagellar biosynthesis/type III secretory pathway ATPase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3500 Length = 430 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 85/339 (25%), Positives = 140/339 (41%), Gaps = 17/339 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 NL+ G + K + L +V + P + + + L P++ + MER Sbjct: 68 NLQPGMPVLRKGKGLMVPTGKNLLGRVIDGLGR-PLDGKGPLADCPLKPVNRPAPPAMER 126 Query: 150 GNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 R +D G GQR I A GK+ LL +A+ + V ++ L Sbjct: 127 QRIREPFVTGIRAIDSVLTCGGGQRVGIFAGSGVGKSTLLGEVAKGSQAD----VNVIAL 182 Query: 209 IDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ER EV + + V+ +T ++ A V+ A+ I A ++V+ Sbjct: 183 IGERGREVAPFLEDVLGPEGMARSVVIVATCEQTALMRVRAAQSAIAIADYFRSESQNVL 242 Query: 262 ILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 ++DS+TRLA A + G+ + G + N GG +T + T L Sbjct: 243 FVIDSLTRLAMAQRELGLLLGEPPSSRGYTPSVFQTLANTVERLGNAAVGG-ITALLTVL 301 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 +D G MDE I + +G + + L RKIAE+ +PAID +RS +R + +E + Sbjct: 302 VD-GGDMDEPIADYVRGLVDGHIVLDRKIAERGFYPAIDVSRSISRVATDVVDRESAKAA 360 Query: 381 WILRKIIHPMGEIDAMEFL-INKLAMTKTNDDFFEMMKR 418 LR I+ +I M + M D E+M + Sbjct: 361 RKLRAIMATHADIQDMLRIGAYTRGMDPQVDKALELMPK 399 >UniRef50_A3SFS3 Flagellum-specific ATP synthase n=3 Tax=Rhodobacteraceae RepID=A3SFS3_9RHOB Length = 463 Score = 257 bits (656), Expect = 7e-67, Method: Composition-based stats. Identities = 83/331 (25%), Positives = 133/331 (40%), Gaps = 18/331 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 + G+T+ + V + T AN +R Sbjct: 78 GVSVGNTVELIEHDDMVSPDDSWIGTVVDALGRPLTQYTRARRPRRKTRFRANPPGAFDR 137 Query: 150 G-NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 G + + +D+ +PI RGQR + A GK+ ++ +A++ + V+++ L Sbjct: 138 KKVGEKLETQIKCIDIFTPICRGQRMGVFAGSGVGKSTMMAMLARNTDAD----VIVIGL 193 Query: 209 IDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ER EV + + + + VV ST DE Q A A+ K V+ Sbjct: 194 IGERGREVQQFIQEDLGEEGMARAVVVVSTGDEAPLLRKQAALTTTAIAEYFKSTGKQVL 253 Query: 262 ILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAAR-NVEEGGSLTIIATA 319 +LLDS+TR A A + A G+ T G + A + G +T + T Sbjct: 254 LLLDSVTRFAMAQREIGLARGEPPTLRGYPPSVFSELPHLLERAGPGMAAEGDITGLYTV 313 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK 379 L+D G M+E I + +G + L L R+IAE+ FPAID +S +R + EE + Sbjct: 314 LVD-GDDMNEPIADAVRGIVDGHLVLDRRIAEQGRFPAIDLQKSLSRMLPGCHSPEEYEI 372 Query: 380 MWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 + RK + ME LI A +D Sbjct: 373 TKVARKALGRYA---DMEDLIRLGAYKAGSD 400 >UniRef50_B2V6Q6 Flagellar protein export ATPase FliI n=4 Tax=Bacteria RepID=B2V6Q6_SULSY Length = 437 Score = 256 bits (653), Expect = 2e-66, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 132/319 (41%), Gaps = 15/319 (4%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 ++ + P L + + + KI + N L + +ER Sbjct: 68 GIKINSPVEVCYTKPSVLVGLDLLGTIVDPFGRPLN--KEKINYSNSYYLKLETINPLER 125 Query: 150 GN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 DL R ++ IG+GQR I++ GK+ LL I++ + V ++ L Sbjct: 126 ERVTEVLDLGVRAVNALFTIGKGQRMGILSGAGVGKSTLLGMISRFTESD----VNVIAL 181 Query: 209 IDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ER EV E L K VV +T D P ++ + A+ K+V+ Sbjct: 182 IGERGREVREFIEDSLKEEGLKKSVVVVATSDMPPLAKIRAVMTSLAIARYFSNIGKNVL 241 Query: 262 ILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 LLDS+TR+A A + ++G+ T G + R A N + GS+T I T L Sbjct: 242 YLLDSLTRVAMAQREIGLSAGEPPTTKGYTPSVFTLLPRIIEQAGNFKNKGSITGIYTVL 301 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 ++ ++ I + + + LSR+IA KR++PAID +S +R L E + Sbjct: 302 VEGDEIQNDPIADAAISFLDGHIVLSRQIANKRIYPAIDILKSISRLMPQLVNDEIMLYQ 361 Query: 381 WILRKIIHPMGEIDAMEFL 399 + + E++ M L Sbjct: 362 SKIISLEAKYREMEDMINL 380 >UniRef50_Q3A946 ATP synthase subunit beta n=5 Tax=Bacteria RepID=ATPB_CARHZ Length = 473 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 59/333 (17%), Positives = 133/333 (39%), Gaps = 18/333 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 L G + P L ++ V +P + + + ++ P+H + E+ Sbjct: 70 GLVRGMKVVDTGAPITVPVGRPVLGRLLNVLG-EPIDGKGPVESDHYYPIHRPAPPLEEQ 128 Query: 150 GNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 + +V+DL P +G + + GKT+++ + +IA H + + Sbjct: 129 STRAEILETGIKVIDLLVPFLKGGKIGLFGGAGVGKTVIVMELINNIAKQH-GGISVFAG 187 Query: 209 IDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDV 260 + ER E ++ + K +V +EP ++V + A+ + +DV Sbjct: 188 VGERTREGNDLYHEMKEAGVLDKTIMVFGQMNEPPGVRLRVGLTGLTMAEYFRDEEGQDV 247 Query: 261 IILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATA 319 ++ +D+I R +A + V G++ + G + + GS+T + Sbjct: 248 LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST-RKGSITSVQAV 306 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR-KEELLTTQEELQ 378 + + + + + LSR+IAE ++PA+D S +R + + +E Q Sbjct: 307 YVPA-DDLTDPAPATTFAHLDATVVLSRQIAELGIYPAVDPLDSTSRILDPHIVGEEHYQ 365 Query: 379 KMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 411 +++++ E ++ +I L M + +D+ Sbjct: 366 VARGVQRVLQRYKE---LQDIIAILGMDELSDE 395 >UniRef50_B8ZR40 ATP synthase subunit alpha n=56 Tax=Bacteria RepID=ATPA_MYCLB Length = 558 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 65/385 (16%), Positives = 125/385 (32%), Gaps = 39/385 (10%) Query: 40 KQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISG 99 ++ + I G L + + G + D + + RTGD +S Sbjct: 53 QELLEFPGGILGV-ALNLDEHNVGAVILGDFENIKEGQKVK-----------RTGDVLSV 100 Query: 100 KIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG-STEDLT 158 + G L + P + R I E L + ++R + Sbjct: 101 PVGEAFMGRVVNPLGQ--------PIDGRGDIEAEARRALELQAPSVVQRQSVKEPLQTG 152 Query: 159 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP------DCVLMVLLIDER 212 + +D +PIGRGQR L++ K GKT + + + N + + I ++ Sbjct: 153 IKAIDAMTPIGRGQRQLVIGDRKTGKTAVCVDTILNQRQNWESGDPKRQVRCVYVAIGQK 212 Query: 213 PEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLD 265 + + + +VA+ + A A+ + K V+I+ D Sbjct: 213 GTTIASVRRALEEGGAMDYTTIVAALASDSAGFKWLAPYTGSAIAQHWMYDGKHVLIVFD 272 Query: 266 SITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE---EGGSLTIIATALI 321 +T+ A AY + + + + R + GGSLT + Sbjct: 273 DLTKQAEAYRAISLLLRRPPGREAYPGDVFYLHSRLLERCAKLADHLGGGSLTGLPIIET 332 Query: 322 DTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMW 381 + + I + + L + + V PAI+ S +R + + Sbjct: 333 KA-NDISAYIPTNVISITDGQCFLETDLFNQGVRPAINVGVSVSRVGGAAQIKAMKEVAG 391 Query: 382 ILRKIIHPMGEIDAMEFLINKLAMT 406 LR + E++A + L T Sbjct: 392 SLRLDLSQYRELEAFAAFASDLDAT 416 >UniRef50_Q058C4 Flagellum-specific ATP synthase n=2 Tax=cellular organisms RepID=Q058C4_BUCCC Length = 457 Score = 255 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 67/344 (19%), Positives = 130/344 (37%), Gaps = 29/344 (8%) Query: 80 YVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPL 139 Y+ I+ G + G++ N + F P+ Sbjct: 99 YIFNKDIKFQYFPFGSKLLGRVLNGFGHPLD---------NLGDLNLKKKLFNFFKKKPI 149 Query: 140 HANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 199 + +R + D ++ +GRGQR I + GK+MLL I++ + Sbjct: 150 NPLNRKPI----TEILDTGVCAINSLLTVGRGQRMGIFSQAGIGKSMLLGMISRHTDAD- 204 Query: 200 PDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKR 252 +++V L+ ER EV + + K V+ S+ D +Q E A+ Sbjct: 205 ---IIVVSLVGERGREVKDFIDNILGKDSLKKSVVIVSSADVSPMFKIQSVEYATAVAEY 261 Query: 253 LVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEEG-G 311 +V++++DS+TR A AY V + ++ A+ N++ G Sbjct: 262 FCNKGNNVLLIVDSLTRYAMAYREVSNSLYEIPVKRYPASIFSNIPYLIERTGNIDNKSG 321 Query: 312 SLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL 371 S+T T L + G + ++ I + K + + LS ++E +PAI+ +S +R + Sbjct: 322 SITSFYTILTE-GDEYNDPILDITKSVLDGHIILSNVLSESGHYPAINIEKSISRLMSSI 380 Query: 372 TTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEM 415 + Q ++K+I + +IN T + + Sbjct: 381 VDHDHYQYSIYIKKLISCYYKN---YDIINLGVYTSGKNKLLDQ 421 >UniRef50_A6VWI3 H+transporting two-sector ATPase alpha/beta subunit central region n=4 Tax=Gammaproteobacteria RepID=A6VWI3_MARMS Length = 318 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 140/315 (44%), Positives = 204/315 (64%), Gaps = 6/315 (1%) Query: 106 EGERYFALLKVNEVN-FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDL 164 +G+R V+EV P + + F N +H + + + G+ T R +DL Sbjct: 9 KGKRSSDATPVDEVVEDLYPND--PEKRFLNGVAIHPSPCIHLASGSSQR---TVRAMDL 63 Query: 165 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK 224 +PIG GQRGLIVAPP +GKT +L++I Q++A +P+ L LLIDERPEEVT+ +R V Sbjct: 64 ITPIGMGQRGLIVAPPGSGKTTMLKHICQAVAEAYPEIKLYALLIDERPEEVTDFKRSVS 123 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 EV AS+ DE ++HV+VA+ ++ A++ +DV+I++DS+TRLAR +N SG+ Sbjct: 124 AEVHASSSDESYTQHVRVADALLATARKQAGEGQDVMIVIDSLTRLARVHNAEQRGSGRT 183 Query: 285 LTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELH 344 ++GG+D AL P++ FGAAR +E GGSLTI+AT L+DTGSKMD+VI+EEFKGTGNME+ Sbjct: 184 MSGGLDTRALEIPRKLFGAARKIENGGSLTILATILVDTGSKMDQVIFEEFKGTGNMEIV 243 Query: 345 LSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 LSR+ A RVFPAID +S TR+EELL ++L+K+ LR+ + + +D L+ L Sbjct: 244 LSREAASHRVFPAIDIAKSSTRREELLIDGKDLEKVRALRRSLTNLKPVDGAHKLVELLE 303 Query: 405 MTKTNDDFFEMMKRS 419 TN + + + Sbjct: 304 EFPTNAELLKAFSPT 318 >UniRef50_P38606 V-type proton ATPase catalytic subunit A n=397 Tax=cellular organisms RepID=VATA_HUMAN Length = 617 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 161/475 (33%), Gaps = 81/475 (17%) Query: 4 TELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHA------------KSGEDIFG 51 ++ + EL+ +G + + + R+ + ++ + K G Sbjct: 32 CDMAGAAMYELVRVGHSELVGEIIRLEGDMATIQVYEETSGVSVGDPVLRTGKPLSVELG 91 Query: 52 DGVLEILQDGFGFLRSADSSYLAGPDDIYVSP-----SQIRRF--------NLRTGDTIS 98 G++ + DG ++ S + IY+ + R NLR G I+ Sbjct: 92 PGIMGAIFDG---IQRPLSDISSQTQSIYIPRGVNVSALSRDIKWDFTPCKNLRVGSHIT 148 Query: 99 GKIRPPKEGERYFALLKV----------------------NEVNFDKPENARNKILFENL 136 G E K+ + V + E + K + Sbjct: 149 GGDIYGIVSENSLIKHKIMLPPRNRGTVTYIAPPGNYDTSDVVLELEFEGVKEKFTMVQV 208 Query: 137 TPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 196 P+ + + RVLD P +G I GKT++ Q++++ Sbjct: 209 WPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKTVISQSLSKYSN 268 Query: 197 YNHPDCVLMVLLIDERPEEVTEMQR----------------LVKGEVVASTFDEPASRHV 240 + V++ + ER E++E+ R + + +VA+T + P + Sbjct: 269 SD----VIIYVGCGERGNEMSEVLRDFPELTMEVDGKVESIMKRTALVANTSNMPVAARE 324 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKR 299 I ++ + V ++ DS +R A A + ++ G A R Sbjct: 325 ASIYTGITLSEYFRDMGYHVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLAS 384 Query: 300 FFGAA------RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKR 353 F+ A N E GS++I+ G + + G + L +K+A+++ Sbjct: 385 FYERAGRVKCLGNPEREGSVSIVGAV-SPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRK 443 Query: 354 VFPAIDYNRSGTRKEELL--TTQEELQKMWILR-KIIHPMGEIDAMEFLINKLAM 405 FP++++ S ++ L + + LR K + E + + ++ + Sbjct: 444 HFPSVNWLISYSKYMRALDEYYDKHFTEFVPLRTKAKEILQEEEDLAEIVQLVGK 498 >UniRef50_Q6AGA5 Flagellum-like ATP synthase n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AGA5_LEIXX Length = 441 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 83/326 (25%), Positives = 136/326 (41%), Gaps = 21/326 (6%) Query: 93 TGDTISGKIRPPKEGERYFALLKVNEVNF-DKPENARNKILFENLTPLHANSRLRMERGN 151 TG +RPP L +V +N P + + + + PL ++R Sbjct: 80 TGAGARFALRPPTVPTGRGLLGRV--INGLGHPIDGKGPLDATSCLPLDNAVPNPLDRAR 137 Query: 152 G-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 210 + L R LD P+GRGQR + A GK+ LL IA+ + V ++ LI Sbjct: 138 IDTPLPLGVRALDTLIPVGRGQRLGLFAGSGVGKSSLLSMIARGTDAD----VFVLALIG 193 Query: 211 ERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 ER EV E L + VV +T DEPA + A A+ ++ D +++ Sbjct: 194 ERGREVREFLEDDLGADGLARSVVVVATSDEPALMRRRAAFAATRIAESFRDNGADAMLM 253 Query: 264 LDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALID 322 +DS+TR+A A + ++G+ T G ++ A + GS+T + T L+D Sbjct: 254 MDSLTRVAMAQREIGLSAGEPPATRGYPSSTFSTLASLLERAG-TAKTGSITGLYTVLVD 312 Query: 323 TGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWI 382 G +E I + + + + L RK+A FP+ID S +R + T + Sbjct: 313 -GDDHNEPIADAARSILDGHVLLDRKLAINGHFPSIDVLGSISRLAGKICTPGQQAAATA 371 Query: 383 LRKIIHPMGEIDAMEFLINKLAMTKT 408 LRK++ L++ A Sbjct: 372 LRKVMAARRAAQD---LLDVGAYKPG 394 >UniRef50_P52612 Flagellum-specific ATP synthase n=269 Tax=Proteobacteria RepID=FLII_ECOLI Length = 457 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 66/313 (21%), Positives = 124/313 (39%), Gaps = 17/313 (5%) Query: 112 ALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG 171 L +V + + + + E + D R ++ +GRG Sbjct: 116 LLGRVLDGSGKPLDGLPSPDTTETGALITPPFNPLQRTPIEHVLDTGVRPINALLTVGRG 175 Query: 172 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV-------K 224 QR + A GK++LL +A+ + V++V LI ER EV + + + Sbjct: 176 QRMGLFAGSGVGKSVLLGMMARYTRAD----VIVVGLIGERGREVKDFIENILGAEGRAR 231 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 V+A+ D +Q A A+ + + V++++DS+TR A A + A G+ Sbjct: 232 SVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEP 291 Query: 285 L-TGGVDANALHRPKRFFGAARNVEEGGSL-TIIATALIDTGSKMDEVIYEEFKGTGNME 342 T G + + A N GG T T L + G + I + + + Sbjct: 292 PATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTE-GDDQQDPIADSARAILDGH 350 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 + LSR++AE +PAID S +R L +++ ++ ++++ L++ Sbjct: 351 IVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYARVRTFKQLLSSFQRNRD---LVSV 407 Query: 403 LAMTKTNDDFFEM 415 A K +D + Sbjct: 408 GAYAKGSDPMLDK 420 >UniRef50_C3KNB0 Type III secretion component, RhcN, ATP synthase n=3 Tax=Bacteria RepID=C3KNB0_RHISN Length = 448 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 82/336 (24%), Positives = 141/336 (41%), Gaps = 31/336 (9%) Query: 87 RRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLR 146 R + D + G++ P L ++ +V+ + ++ + P H Sbjct: 98 RTLQIPVCDDLLGRVVNP--------LGEILDVS----DERAIPVVTDTYYPTHRPPPHA 145 Query: 147 MERG-NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 205 + R L R +D + RGQR I P GK+ LL I + + V++ Sbjct: 146 LRRDLITEPLQLGIRAIDGLLTVARGQRVGIFGEPGVGKSSLLSAIVRGTKAD----VIV 201 Query: 206 VLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK 258 + LI ER EV E + VV +T D PA V+ A A+ + ++ Sbjct: 202 IGLIGERGREVREFIEGQLGEEGRRRSVVVVATSDRPAIERVKAAYAATAIAEYFRDQRR 261 Query: 259 DVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIA 317 DV++L+DS+TR ARA + A+G+ T G + R A +GGS+T + Sbjct: 262 DVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSLFAALPRLLERAG-PGQGGSITALY 320 Query: 318 TALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEEL 377 T L + + + + EE K + + LS +AE+ FPAID +S +R E + + Sbjct: 321 TVLTEGDGTL-DPVAEETKAILDGHIMLSSALAERNFFPAIDILKSRSRLMETVAGRTHR 379 Query: 378 QKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFF 413 +R ++ EI+ L+ ++ + D Sbjct: 380 DHAARIRTLLARYEEIE----LLLRVGEYERGADAL 411 >UniRef50_Q4JUJ8 ATP synthase subunit alpha n=54 Tax=Actinobacteridae RepID=ATPA_CORJK Length = 545 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 56/332 (16%), Positives = 113/332 (34%), Gaps = 22/332 (6%) Query: 91 LRTGDTIS--GKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRME 148 L+ GD + G++ GE++ L +V + + E + M Sbjct: 85 LKEGDEVKRTGEVLSIPVGEKF--LGRVINPLGQAIDGLGDIESEEERALELQAPSVLMR 142 Query: 149 RGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH------PDC 202 + + +D +PIGRGQR LI+ K GKT + + + N Sbjct: 143 QPVEEPMQTGIKAIDAMTPIGRGQRQLIIGDRKTGKTSVCIDTILNQRDNWATGDPKQQV 202 Query: 203 VLMVLLIDERPEEVT-------EMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 + + + ++ + + L +VA+ + A + + Sbjct: 203 RCIYVAVGQKGSTIASIRKTLEDHGALEYTTIVAAPASDSAGFKWLAPFTGAALGQHWMY 262 Query: 256 HKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE---EGG 311 K V+++ D +T+ A AY + + + + R A + GG Sbjct: 263 QGKHVLVIYDDLTKQAEAYRAISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGG 322 Query: 312 SLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL 371 SLT + + + I + ++ L + + V PAI+ S +R Sbjct: 323 SLTALPIIETKA-NDVSAFIPTNVISITDGQVFLESDLFNQGVRPAINVGVSVSRVGGAA 381 Query: 372 TTQEELQKMWILRKIIHPMGEIDAMEFLINKL 403 T+ + LR + +++A + L Sbjct: 382 QTKGMKKVSGSLRLDLAAYRDLEAFAAFASDL 413 >UniRef50_O67531 Flagellum-specific ATP synthase n=3 Tax=Aquificaceae RepID=FLII_AQUAE Length = 443 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 85/340 (25%), Positives = 141/340 (41%), Gaps = 17/340 (5%) Query: 89 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRME 148 F LR GD + K + KV + + + I F L + Sbjct: 81 FGLRKGDKVLLKNELVSTKTGNGVVGKVVDPFGNPLDG--GFIGFVEEKGLELPQINPLY 138 Query: 149 RGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207 R D R ++ +G+GQ+ I A GK+ LL I + + V+++ Sbjct: 139 RERIREVFDTGVRSVNALFTLGKGQKIGIFAGAGVGKSTLLGMITRHSKAD----VVVLA 194 Query: 208 LIDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260 LI ER EV E V GE VV ST D+ V+ A + A KDV Sbjct: 195 LIGERGREVKEFLEEVLGEEGLKKSVVVVSTADQSPILKVKGAISAVVHAHHFASQGKDV 254 Query: 261 IILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATA 319 ++L+DSITRLA A + A+G+ T G + R + ++ GS+T I T Sbjct: 255 LLLMDSITRLALAQREIGLAAGEPPTLKGFTPSVFQLLTRIAESCGAFKK-GSITGIFTV 313 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQK 379 L++ + I + G + + LSRK A + +FPA+D RS +R L ++E K Sbjct: 314 LVEGDDISLDPIADSLMGVLDGHIILSRKRAVRGLFPAVDPVRSLSRLMPKLVSEEHFMK 373 Query: 380 MWILRKIIHPMGEIDAMEFL-INKLAMTKTNDDFFEMMKR 418 ++++ +++ + + + K D +++ Sbjct: 374 ANFFKEVLSKFEDVEELVRIGLYKGGSNPLVDKVINNLEK 413 >UniRef50_C6DIX7 Type III secretion apparatus H+-transporting two-sector ATPase n=13 Tax=Gammaproteobacteria RepID=C6DIX7_PECCP Length = 455 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 76/351 (21%), Positives = 142/351 (40%), Gaps = 25/351 (7%) Query: 75 GPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENAR------ 128 PD+ ++S + + G T++ +P L V + E+ Sbjct: 73 SPDNTFLS-ALGALDGIAQGATVTPLYQPHCIQVSERLLGSVLDGFGRALEDDGESAFVE 131 Query: 129 NKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTML 187 P+ ++ R S R +D IG+GQR I A GKT L Sbjct: 132 PGHATGRTQPVLGDAPPPTSRPRISQPLPTGLRAVDGLLTIGQGQRVGIFAGAGCGKTTL 191 Query: 188 LQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHV 240 L +A++ P ++ LI ER E+ E + +V ST D + Sbjct: 192 LAELARNT----PCDAIVFGLIGERGRELREFLDHELDDELRSRTVLVCSTSDRSSMERA 247 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV-LTGGVDANALHRPKR 299 + A A+ + V++++DS+TR ARA + A G+ GG+ + R Sbjct: 248 RAAFTATAIAEAYRAEGRQVLLIIDSLTRFARAQREIGLALGEPQGRGGLPPSVYTLLPR 307 Query: 300 FFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID 359 A E+ G++T + + LI+ S M++ + +E + + + L+R++AE+ +PAID Sbjct: 308 LVERAGQTED-GAITALYSVLIEQDS-MNDPVADEVRSLIDGHIVLARRLAEQGHYPAID 365 Query: 360 YNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 S +R + + + +R+++ +++ LI +D Sbjct: 366 VLASLSRTMSNVVDTDHTRNAGGVRRLMAAYKQVE---MLIRLGEYQPGHD 413 >UniRef50_Q1GNY4 ATPase FliI/YscN n=3 Tax=Bacteria RepID=Q1GNY4_SPHAL Length = 443 Score = 251 bits (640), Expect = 5e-65, Method: Composition-based stats. Identities = 87/378 (23%), Positives = 149/378 (39%), Gaps = 22/378 (5%) Query: 37 AILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYV-SPSQIRRFN----L 91 I A G + G + L +RSAD+ Y+ G + S + F+ L Sbjct: 25 RIGTLVAHEGIMLEVSGFPQPLGSNV-RIRSADNDYVYGEVVGFRGHRSLVLPFDTNKPL 83 Query: 92 RTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN 151 TG + L ++ + P + R I + PL + RG Sbjct: 84 VTGAPVEPHGASSMVPVGKALLGRIMDAQG-NPLDGRPAIKSQFQWPLAGRKVNPLRRGR 142 Query: 152 GST-EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 210 + ++ R ++ +G GQR I+A GK++L+ + + V++V LI Sbjct: 143 VTRALNMGVRAINGLLTVGEGQRVAIIAGSGVGKSVLMGQMIAGTECD----VIVVGLIG 198 Query: 211 ERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 ER EV++ K VVA D P ++ A A+ K V++L Sbjct: 199 ERSREVSDFVETKLPPDVRKKSVVVAVPADHPPLLRLRAAMRATAIAEAFRAEGKKVLLL 258 Query: 264 LDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEE-GGSLTIIATALI 321 +DS+TR+A A + G+ T G + A + GGS+T + T L Sbjct: 259 IDSLTRVAHAQREIGLTLGEPPTMKGYPPSVFALIPSLCERAGIDKATGGSVTALYTVLA 318 Query: 322 DTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMW 381 D G +D+ + + + + + LSR++AE+ V+PAID RS +R + Sbjct: 319 D-GGDIDDPVVDSARAIVDGHIILSRQLAEQGVYPAIDVARSLSRTMADSVDADHAAAAA 377 Query: 382 ILRKIIHPMGEIDAMEFL 399 R++ E + + Sbjct: 378 RFRQLWSLYEENRDLMLM 395 >UniRef50_Q12T73 ATPase FliI/YscN n=1 Tax=Shewanella denitrificans OS217 RepID=Q12T73_SHEDO Length = 436 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 83/382 (21%), Positives = 154/382 (40%), Gaps = 26/382 (6%) Query: 45 SGEDIFGDGVLEILQDGFGF------LRSADSSYLA-GPDDIYVSPSQIRRF------NL 91 G + +G++ + F +R AD + + I +S +Q++ + Sbjct: 16 YGSVLRSEGLMLVASLPQAFVGELCTIRRADETLPDISAEVISISETQVKLMPFQSASGI 75 Query: 92 RTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN 151 GD + G + L V + P + + + + A+ + R Sbjct: 76 SFGDKLIGSGTSIRLPMGSGMLGHVVDAFGQ-PLDEQELGVVQTQCVFLASHINPLTRAA 134 Query: 152 G-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 210 + LD PIG+GQR I+A GK+ LL ++ S A + V++++L+ Sbjct: 135 IDEPLTTRIKALDSFIPIGKGQRVGILAGSGVGKSTLLAMMSDSCAQQNA--VIVIVLVG 192 Query: 211 ERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 ER EV E + +VA+T +E V + + A+ L K+VI + Sbjct: 193 ERGREVEEFVNGKMFKRLRSRAVLVAATAEEMPVTRVLAVKYGLALAESLSAEGKEVIFV 252 Query: 264 LDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATALID 322 +DS+TR+A A + A G+ T G + +R S+T + + L++ Sbjct: 253 VDSLTRVAMAQREIGLAIGEPPTAKGYTPSVFSLLQRIVERCGAFRHRASITALFSVLVE 312 Query: 323 TGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWI 382 T D+ I + + + + L R +AE+ FPAID RS +R L ++++ Sbjct: 313 T-DDFDDPIVDTLRAVLDGHIVLDRALAEQGHFPAIDVLRSVSRLTTNLFDAKKIKLSRA 371 Query: 383 LRKIIHPMGEIDAMEFLINKLA 404 R ++ + M L + Sbjct: 372 GRILLSEYKQKKMMIDLADAEG 393 >UniRef50_A1WUC0 Flagellar protein export ATPase FliI n=15 Tax=Bacteria RepID=A1WUC0_HALHL Length = 449 Score = 250 bits (638), Expect = 9e-65, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 140/347 (40%), Gaps = 27/347 (7%) Query: 87 RRFNLRTGD--------TISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTP 138 R + + TGD + + + L +V + + + TP Sbjct: 74 RLYLMPTGDLRGVMPNARVIPRGSGAQARVGEELLGRVIDGGGQP-IDGGGPLKARERTP 132 Query: 139 LHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 197 L A +ER + D+ R ++ +GRGQR + A GK++LL + + Sbjct: 133 LMAEPINPLERAPIAAPLDVGVRSINALFTVGRGQRMGLFAGSGVGKSVLLGMMTRYTTA 192 Query: 198 NHPDCVLMVLLIDERPEEVTEMQRLVKG-------EVVASTFDEPASRHVQVAEMVIEKA 250 + V++V LI ER EV E + G VVA+ D + A A Sbjct: 193 D----VVVVGLIGERGREVREFITEILGRHGLARAVVVAAPADTSPLFRLHGAMRATSIA 248 Query: 251 KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARN-VE 308 + + +V++L+DS+TR A+A + A G+ T G + R A N + Sbjct: 249 EYFRDQGYNVLLLMDSLTRYAQAQREIGLAIGEPPTTKGYPPSVFGLLPRLVERAGNGPD 308 Query: 309 EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE 368 GGS+T T L++ G E I + + + L LSR +A+ V+PA+D S +R Sbjct: 309 GGGSITAFYTVLVE-GDDQQEPIADSARAILDGHLVLSRSLADSGVYPAVDVEASISRAM 367 Query: 369 ELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEM 415 +T + R++ + + LI+ A + +D + Sbjct: 368 MAITEGRHQKAAQRFRELYAAYRQNED---LISVGAYQRGSDPLVDQ 411 >UniRef50_A1UTV1 Flagellum-specific ATP synthase n=55 Tax=Alphaproteobacteria RepID=A1UTV1_BARBK Length = 537 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 128/311 (41%), Gaps = 17/311 (5%) Query: 114 LKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQ 172 +V + + +L + + A++ + R G+ +V+D+ +P+ GQ Sbjct: 200 GRVVNAFGEAIDGKGALLLGSSPMAVEAHAPPALARARVGNGLRTGVKVIDIFTPLCFGQ 259 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ------RLVKGE 226 R I + GK+ LL + Q+ ++ +++ L ER EV +M +L K Sbjct: 260 RIGIFSGSGVGKSTLLSMMMQADHFDK----VVLALTGERGREVRDMLDDTLQDKLDKVV 315 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL- 285 V +T DE M A+ +V++++DSITR A A + ++ + Sbjct: 316 AVIATSDESPMMRRLAPIMATTIAEYFSSLGDNVLLVVDSITRYALAVREIAISAHEPPV 375 Query: 286 TGGVDANALHRPKRFFGAARNVEEG-GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELH 344 + G R A +G GS+T + L+D G ++ I + +G + + Sbjct: 376 SRGFPPRVFSELPRLLERAGPGRKGKGSITGVYAVLVD-GDDHNDPIADAIRGILDGHIV 434 Query: 345 LSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 L R IA + FPA+D + S +R T E+ + L+++I E + + A Sbjct: 435 LDRAIAAQGRFPAVDISSSISRLASHSWTGEQRILVQSLKEMIFRYEETRDLRAM---GA 491 Query: 405 MTKTNDDFFEM 415 D + Sbjct: 492 YRPGTDHILDQ 502 >UniRef50_Q8T4C4 ATP synthase subunit beta n=8 Tax=cellular organisms RepID=Q8T4C4_DROME Length = 622 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 55/337 (16%), Positives = 124/337 (36%), Gaps = 21/337 (6%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 LR G + P + L ++ V D ++ R ++ + + +H + + Sbjct: 162 GLRRGQPVLDTGYPIRVAVGKAVLGRILNVVGDPIDD-RGEVKSDFYSFIHNEAPELTDL 220 Query: 150 GN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 +V+DL +P +G + + GKT+L+ + +IA +H + + Sbjct: 221 SVKPEILVTGIKVIDLLAPYVKGGKIGLFGGAGVGKTVLIMELINNIAKSH-GGYSVFVG 279 Query: 209 IDERPEEVTEMQ-------------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 ER E ++ K +V +EP +V + A+ + Sbjct: 280 AGERTREGNDLYHEMIESKVISLEDDSSKVVLVFGQMNEPPGARSRVVLTGLTIAEYFRD 339 Query: 256 -HKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSL 313 +DV++ +D+I R +A + V G++ + G + GS+ Sbjct: 340 VDGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLGTDMGTMQERITSTRN-GSI 398 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR-KEELLT 372 T + + + + + LSR IAE ++PA+D S +R + + Sbjct: 399 TSVQAVYVPA-DDLSDPAPAATFSHLDATTVLSRPIAELGIYPAVDPLDSSSRILDPDVV 457 Query: 373 TQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 +E ++K + + + ++ +++ + Sbjct: 458 GEEHYNVARAVQKTLQAYKSLQDIIAILGMDELSEED 494 >UniRef50_Q141X8 ATPase FliI/YscN n=11 Tax=Proteobacteria RepID=Q141X8_BURXL Length = 444 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 76/308 (24%), Positives = 127/308 (41%), Gaps = 18/308 (5%) Query: 112 ALLKVNEVNFDKPENAR-NKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIG 169 L +V + + + + L + +ER + R +D G Sbjct: 102 LLGRVVDGLGNPLDGGPVPRPLASAAAQAGEGTLNPLERPVIATPFATGVRAIDGLLTCG 161 Query: 170 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ------RLV 223 GQR I AP GK+ ++ IA + + ++V LI ER EV E R Sbjct: 162 VGQRTGIFAPAGGGKSTIMGMIANGASTD----AIVVALIGERGREVAEFIHDHLERRRA 217 Query: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283 V+A+T D PA+ ++ AE+ + A L ++V++L DS+TR ARA + A G+ Sbjct: 218 STIVIAATSDRPAAERIKAAELASQVAVGLRASGRNVLLLFDSLTRYARALRELGLAVGE 277 Query: 284 VL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME 342 GG + + R AA + GS+T T L D + + + + EE + + Sbjct: 278 PPLRGGFPPSVFAQLPRLIEAAGVTAQ-GSITAFYTVLAD-EADLSDPVAEEARSLLDGH 335 Query: 343 LHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINK 402 + LS K+ +PAID RS +R + +R + + +E L+ Sbjct: 336 IQLSSKLGAAGHYPAIDILRSRSRLMTRVAAAVHQADANRVRDWLARY---EDVELLLQI 392 Query: 403 LAMTKTND 410 + ND Sbjct: 393 GEYQRGND 400 >UniRef50_A3V245 FliI, Flagellum-specific ATPase n=4 Tax=Rhodobacterales RepID=A3V245_9RHOB Length = 444 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 68/310 (21%), Positives = 125/310 (40%), Gaps = 20/310 (6%) Query: 118 EVNFDK-PENARNKILFENLTPLHANSRLRM-ERGNGSTEDLTARVLDLASPIGRGQRGL 175 V+ P + PL+ + R D+ R ++ IG GQR Sbjct: 108 TVDGLGWPLDDAPAPQVSAQAPLNGTLVNPLARRQIPGPLDVGVRAVNGLLTIGCGQRIG 167 Query: 176 IVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-------EVV 228 I+A GK++LL +A+ + + V+++ LI ER EV EM R + ++ Sbjct: 168 IIAGSGVGKSVLLGMMARYTSAD----VVVIGLIGERAREVGEMVRAIMQPATRGKVSII 223 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TG 287 A D ++ A A+ + K+V++++DS+TR+A A + A G+ + Sbjct: 224 AVPADRSPLLRIRGARRATALAEHFRDQGKNVLLIMDSLTRVAHAQREIGLALGEAPTSK 283 Query: 288 GVDANALHRPKRFFGAARNV--EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHL 345 G A+ + A GS+T I T L D G ++ + + + + + L Sbjct: 284 GYPASVISMIPNLIERAGMGVGPNAGSITGIYTVLAD-GDDSNDPVVDTARAILDGHIVL 342 Query: 346 SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 SR IA+ V+PAID S +R + + + ++++ E + + Sbjct: 343 SRSIAQMGVYPAIDIPASISRVMNDIVPLSQQKAARKFKRLVSLYNENRDLMLM---GGY 399 Query: 406 TKTNDDFFEM 415 D + Sbjct: 400 VSGQDADLDQ 409 >UniRef50_C8W8D3 ATP synthase subunit alpha n=2 Tax=Atopobium RepID=C8W8D3_ATOPD Length = 557 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 57/350 (16%), Positives = 115/350 (32%), Gaps = 39/350 (11%) Query: 93 TGDTISGKIRPPKEGERYFALLKVNEVN------------FDKPENARNKILFENLTPLH 140 G + G++ KEG+ +V ++ +P + I + P+ Sbjct: 85 VGAVLFGEVSEIKEGDECRTTGRVMDIPAGYDMLGRVVNPLGQPIDGLGAIHATHRRPIE 144 Query: 141 ANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 199 + M+R +D P+GRGQR LI+ K GKT + + + + Sbjct: 145 FKAPGIMQRQPVCEPVQTGLLAIDAMVPVGRGQRELIIGDRKTGKTAIAIDAIVNQ--KN 202 Query: 200 PDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKR 252 D + + + I ++ V ++ + K +VA+T + A + Sbjct: 203 TDMICIYVAIGQKASTVANIRESLSRHGVLDKTVIVAATAADSAPMQYIAPMAGAAIGEF 262 Query: 253 LVEH------------KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKR 299 + + V+++ D +++ A AY + + + + R Sbjct: 263 FMYNDKDGKPADKDHPGGHVLVVYDDLSKQAVAYRQMSLTLHRPPGREAYPGDIFYLHSR 322 Query: 300 FFGAARNV---EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 356 A + GSLT + + I + +++L + + P Sbjct: 323 LLERACKLSDENGAGSLTALPIIETQ-EGDVSAYIPTNVISITDGQIYLQSNLFFQGQRP 381 Query: 357 AIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMT 406 A+D S +R + Q LR + E A + L T Sbjct: 382 AVDVGISVSRVGGDAQVKAMKQVAGTLRLDLASYREKQAFSQFGSDLDAT 431 >UniRef50_A3FPS2 ATP synthase subunit alpha n=2 Tax=Cryptosporidium RepID=A3FPS2_CRYPV Length = 639 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 108/319 (33%), Gaps = 18/319 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 N+R GD + L +V + P + + I+ + + M+R Sbjct: 203 NIRKGDQVISTNTIVNCPVGKELLGRVVDALG-NPIDGKPSIISLEKREIDVKAPGIMDR 261 Query: 150 GN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC----VL 204 + +D PIG GQR IV + GKT L+ +I + + D Sbjct: 262 KPINEQLITGIKFIDSLIPIGLGQREAIVGDRQTGKTSLVLDIILNQRKFYDDIKTRKYC 321 Query: 205 MVLLIDERPEEVTEMQ-------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK 257 + + I ++ V ++ L V+A+T AS + ++ Sbjct: 322 IYVAIGQKRSSVAQIVKILEKYDALKYTIVIAATASNAASLQFLAPFTGCTMGEWFRDNG 381 Query: 258 KDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV---EEGGSL 313 + II+ D +++ A AY + + + + R + + + GGSL Sbjct: 382 QHCIIVYDDLSKQANAYRQISLLLRRPPGRESYPGDIFYIHSRLLERSSKLSDEKGGGSL 441 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTT 373 T + + +K I + ++ L + K PA + S +R Sbjct: 442 TALPIVETQS-NKFSSFIPTNITSITDGQIVLDSDLFFKGNRPAFNLGLSISRIGSSTQN 500 Query: 374 QEELQKMWILRKIIHPMGE 392 + + ++ + E Sbjct: 501 KSIKKVSQNIKLDLLQYKE 519 >UniRef50_Q0AEI9 ATP synthase subunit alpha 2 n=5 Tax=Proteobacteria RepID=ATPA2_NITEC Length = 516 Score = 248 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 63/382 (16%), Positives = 131/382 (34%), Gaps = 39/382 (10%) Query: 34 IIFAILKQHAKSGEDIFGDGV----LEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRF 89 I+ + + A +F GV L++ G + S + + +Y + + Sbjct: 48 IVSGLARALADEL-LVFASGVHGIVLDLEPGRLGIILLGPSEQIHLGETVYRTRKVV--- 103 Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRM-E 148 ++ G + G++ +P + I P+ A + + Sbjct: 104 SVPVGSALLGRVIDAM----------------GRPRDTLGPIDAIAEHPIEAEAPSILNR 147 Query: 149 RGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 + +D A P+G GQR LI+ + GKT + + + A + D + + Sbjct: 148 TQIFRPLATGLKAIDAAIPVGLGQRELIIGDRQTGKTSIAIDTMLNQARS--DVLCIYCA 205 Query: 209 IDERPEEVTEM------QRLVKGEVVASTFDE-PASRHVQVAEMVIEKAKRLVEHKKDVI 261 + +R + V + +++ +V S DE + A+ +DV+ Sbjct: 206 VGQRGDAVARVIRALKDGEMLQRCIVMSAGDEEAPGLSYIAPYAAMTMAEYFSAQGQDVL 265 Query: 262 ILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE---EGGSLTIIA 317 ++ D +T AR+Y + + + + R A GGS+T + Sbjct: 266 VIFDDMTHHARSYRELSLLLRRPPGREAFPGDIFYVHARLLERAGQFGADIGGGSITTLP 325 Query: 318 TALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEEL 377 G + I + +++LS ++ K FPA+D S +R + Sbjct: 326 VVETQAG-NLSAYIPTNLISITDGQIYLSPQLVRKNQFPAVDLGLSVSRVGSKAQNRTLR 384 Query: 378 QKMWILRKIIHPMGEIDAMEFL 399 LR + E++ Sbjct: 385 GVSGNLRVTLSQFEELEDFARF 406 >UniRef50_Q2S432 ATP synthase subunit alpha n=4 Tax=Bacteria RepID=ATPA_SALRD Length = 551 Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats. Identities = 58/393 (14%), Positives = 120/393 (30%), Gaps = 56/393 (14%) Query: 41 QHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK 100 + + E VL + +D G + D ++ D+ + Sbjct: 54 ELVEFPEQDVEGMVLNLEEDNVGVILFGDVDAVSEGDEARRTG----------------- 96 Query: 101 IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTA 159 R G L +V + + + + PL + + R Sbjct: 97 -RIASVGVNENMLGRVIDPLGRPLDGKGPIEGEKTVLPLERKAPGVIYREPVEEPLQTGI 155 Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD-------CVLMVLLIDER 212 + +D P+GRGQR L++ + GKT +L + + H + + + + ++ Sbjct: 156 KAIDSMIPVGRGQRELVIGDRQTGKTAVLTDTIINQKKTHQEGTDSGDPVYCVYVAVGQK 215 Query: 213 PEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLD 265 V ++QR L +V ++ P + + +D ++ D Sbjct: 216 DSTVAQVQRDLERNGALEHTVIVNASASMPTPLQYVAPFAGACIGEYFRDTGRDSLVCFD 275 Query: 266 SITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV----------------- 307 +++ A AY + + + + R A + Sbjct: 276 DLSKQAVAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKIISDEEVATQMNGLPDAL 335 Query: 308 ----EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRS 363 + GGSLT + G + I + +++L + + PAID S Sbjct: 336 QDKVQGGGSLTALPVIETQAG-DVSAYIPTNVISITDGQIYLETDLFNSGIRPAIDVGNS 394 Query: 364 GTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 +R LR + E++A Sbjct: 395 VSRVGGSAQIDAMKDVASTLRIDLSQYRELEAF 427 >UniRef50_Q52371 Type III secretion ATP synthase hrcN n=14 Tax=Pseudomonas RepID=HRCN_PSESY Length = 449 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 78/336 (23%), Positives = 142/336 (42%), Gaps = 24/336 (7%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENA-----RNKILFENLTPLHANSR 144 ++ G I + G L V + P+ A++ Sbjct: 81 GIQVGAPIRPLGVAHRIGVDDSLLGCVLDGFGRPLMGDCLGAFAGPEDRRTTLPVIADAL 140 Query: 145 LRMERGNGST-EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 203 +R + R +D A +G GQR + A GKT L+ +A+++ + V Sbjct: 141 PPTQRPRITRALPTGIRAIDSAILLGEGQRVGLFAGAGCGKTTLMAELARNMDCD----V 196 Query: 204 LMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH 256 ++ LI ER E+ E + +V +T D + + A A+ Sbjct: 197 IVFGLIGERGRELREFLDHELDETLRRRSVLVCATSDRSSMERARAAFTATAIAEAFRAR 256 Query: 257 KKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTI 315 + V++LLDS+TR ARA + ASG+ L GG+ + R A E GS+T Sbjct: 257 GQKVLLLLDSLTRFARAQREIGIASGEPLGRGGLPPSVYTLLPRLVERAGMSEN-GSITA 315 Query: 316 IATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQE 375 + T LI+ S M++ + +E + + + LSRK+AE+ +PAID + S +R +T ++ Sbjct: 316 LYTVLIEQDS-MNDPVADEVRSLLDGHIVLSRKLAERGHYPAIDVSASISRILSNVTGRK 374 Query: 376 ELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 411 + LR+++ +++ ++ +L + D Sbjct: 375 HQRANNRLRQLLAAYKQVE----MLLRLGEYQAGAD 406 >UniRef50_A1SHI9 ATP synthase subunit alpha n=2145 Tax=cellular organisms RepID=ATPA_NOCSJ Length = 547 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 62/377 (16%), Positives = 115/377 (30%), Gaps = 38/377 (10%) Query: 45 SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPP 104 ED L + G + D + + + ++ GD G++ P Sbjct: 58 EFEDGTMGLALNLDTREIGVVILGDFEGIEEGQTVRRTGEI---LSVPVGDNFMGRVVDP 114 Query: 105 KEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLD 163 KP + +I E L + M+R + + +D Sbjct: 115 L----------------GKPIDGLGEIEAETRRALELQAPTVMQRKSVHEPLATGIKAID 158 Query: 164 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH------PDCVLMVLLIDERPEEVT 217 +PIGRGQR LI+ GKT + + + N + + I ++ + Sbjct: 159 SMTPIGRGQRQLIIGDRATGKTTIAIDTIINQKQNWESGDPAKQVRCIYVAIGQKGSTIA 218 Query: 218 -------EMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 270 E L +VAS + A + + K V+I+ D +T+ Sbjct: 219 SVRGALEEAGALEYTTIVASPASDSAGFKYLAPYTGSAIGQHWMYDGKHVLIIFDDLTKQ 278 Query: 271 ARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE---EGGSLTIIATALIDTGSK 326 A AY V + + + R + GS+T + + Sbjct: 279 AEAYRAVSLLLRRPPGREAYPGDVFYLHSRLLERCAKLSDDMGAGSMTGLPIIETKA-ND 337 Query: 327 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKI 386 + I + ++ L + PAID S +R T+ L+ Sbjct: 338 VSAYIPTNVISITDGQIFLQSDLFASNQRPAIDVGVSVSRVGGSAMTKAMKAVTGSLKVD 397 Query: 387 IHPMGEIDAMEFLINKL 403 + ++A + L Sbjct: 398 LAQFRAMEAFAMFASDL 414 >UniRef50_A6GN32 Type III secretion protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GN32_9BURK Length = 461 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 135/341 (39%), Gaps = 22/341 (6%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFD---KPENARNKILF--ENLTPLHANSR 144 + G + R L + + P + R+ +L + P+ + Sbjct: 85 GVALGSRVLPLGRAHSIKASDHLLSSLLDGMGRNLDHPNDRRSGVLSVDSDARPVIQVAP 144 Query: 145 LRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 203 +R + RV+D +G GQR I APP GK+ L+ I + + Sbjct: 145 PASKRPPVSESLVTKVRVIDGLLTLGIGQRVGIFAPPGCGKSTLMAQIVRGANVD----A 200 Query: 204 LMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH 256 ++ L+ ER E+ E K V +T D A V+ A A+ L + Sbjct: 201 VVFGLVGERGRELREFIEKEITDEIRKKSFFVCATSDRSAIERVRAAFTATSIAEYLRDQ 260 Query: 257 KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTI 315 K V++++DS+TRLARA + +G+ T G + + E+ G +T Sbjct: 261 GKSVLLVVDSLTRLARAQRELGLMAGEPATQAGFTPSVYSILPELIERSGRTEQ-GDITA 319 Query: 316 IATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQE 375 + T L++ D+ I E K + + LS K+ E+ FPAID +S +R +T+ + Sbjct: 320 VFTVLMEGERIEDDPIASEAKSLLDGHIVLSTKLVERSHFPAIDPLKSLSRVMGSVTSVK 379 Query: 376 ELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMM 416 + ++R+ E++ LI D + + Sbjct: 380 TQELASLVRRAYSLYQEVE---LLIRLNEYQPGTDPLVDEV 417 >UniRef50_Q9C5A9 ATP synthase subunit beta-3, mitochondrial n=930 Tax=cellular organisms RepID=ATPBO_ARATH Length = 559 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 60/391 (15%), Positives = 139/391 (35%), Gaps = 26/391 (6%) Query: 38 ILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTI 97 + + LE+ + ++ + + L G + Sbjct: 97 VDVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHL---GQNVVRTIAMDGTEGLVRGRKV 153 Query: 98 SGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG-STED 156 P L ++ V +P + R +I E+ P+H ++ ++ G Sbjct: 154 LNTGAPITVPVGRATLGRIMNVLG-EPIDERGEIKTEHYLPIHRDAPALVDLATGQEILA 212 Query: 157 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV 216 +V+DL +P RG + + GKT+L+ + ++A H + + ER E Sbjct: 213 TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREG 271 Query: 217 TEMQRLV---------------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDV 260 ++ R + K +V +EP +V + A+ + +DV Sbjct: 272 NDLYREMIESGVIKLGEKQSESKCALVYGQMNEPPGARARVGLTGLTVAEYFRDAEGQDV 331 Query: 261 IILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATA 319 ++ +D+I R +A + V G++ + G ++ GS+T + Sbjct: 332 LLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLASDLGALQERITTTKK-GSITSVQAI 390 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR-KEELLTTQEELQ 378 + + + + LSR+I+E ++PA+D S +R + +E Sbjct: 391 YVPA-DDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYN 449 Query: 379 KMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 ++K++ + + ++ +++ + Sbjct: 450 TARGVQKVLQNYKNLQDIIAILGMDELSEDD 480 >UniRef50_B1TCL2 ATPase, FliI/YscN family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TCL2_9BURK Length = 443 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 79/420 (18%), Positives = 152/420 (36%), Gaps = 29/420 (6%) Query: 9 TPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVL-----EILQDGFG 63 P L + +R+ ++ I+ ++ G L E + Sbjct: 1 MPSRPLTEHAYVAAIRMTDPVRRTGVVTRIMPTFVEADGPGAPLGSLCAIGGEQSEPTLA 60 Query: 64 FLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDK 123 + + + + + Y + S IR GD ++ L +V + Sbjct: 61 EIVNVERTRVTLA--PYSTASAIR-----IGDEVAALQADATIPVGDAYLGRVVDPLGRP 113 Query: 124 PENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPIGRGQRGLIVAPPKA 182 + A PL + +ER + + R LD +G GQR + A Sbjct: 114 LDGAGALGHCVANWPLAGIATPPLERQSPEHVLETGVRALDALLTLGVGQRVGLFAGSGV 173 Query: 183 GKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE-------MQRLVKGEVVASTFDEP 235 GKT LL +A+ + + V ++ L+ ER EV E + +V +T D+ Sbjct: 174 GKTTLLGALARDVYAD----VRVLCLVGERGREVEECWNRTLSAASRARTTLVVATSDQS 229 Query: 236 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANAL 294 A+ + + A+ V++++DS+TR A A + A+G+ T Sbjct: 230 AALRARSVPAALSIAEYFRSQGAHVLLMIDSVTRYALALREIGLAAGEPPTVRAYTPGVF 289 Query: 295 HRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRV 354 + ++ GG++T + T L ++ +D+ + E + + + LSR +AE+ Sbjct: 290 AALPKIVERCGALKSGGAITALMTVLTES-DDIDDPMAETMRSLLDGHIVLSRALAEQGQ 348 Query: 355 FPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFE 414 FP I +S +R + E I + DA + L+ T + + Sbjct: 349 FPPIQVPKSVSRVSRYVANDAERALAA---DAIAQLALYDASKTLVESGLYTAGSHPALD 405 >UniRef50_A2BKX6 V-type ATP synthase alpha chain n=17 Tax=cellular organisms RepID=VATA_HYPBU Length = 601 Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 83/479 (17%), Positives = 172/479 (35%), Gaps = 77/479 (16%) Query: 11 VSELITLGENMGLENLARMRKQDIIFAILKQHA--KSGEDIFGDGV---LEILQDGFGFL 65 + E++ +GE + + R+ + + K GE ++G G +E+ G + Sbjct: 25 MYEMVEVGEERLIGEVNRVVGDKAYIQVYESTTGLKPGEPVYGTGSPLSVELGPGLIGRI 84 Query: 66 ----RSADSSYLAGPDDIYV-------SPSQIRRFN------LRTGDTISG--------- 99 + I+V + + R+++ L+ GD +SG Sbjct: 85 YDGIQRPLDVIREVTKSIFVRRGVKVDALDRSRKWHFKPNTTLKPGDKVSGGDVLGEVQE 144 Query: 100 -------KIRPPKEGERYFAL------LKVNEVNFDKPENARNKILFENLTPLHANSRLR 146 + PP R L + + + + ++ + P+ + Sbjct: 145 TSLITHKVLVPPDVHGRLKWLASEGDYTVEDVIAVVEADGKEIELKMYHRWPVRRARPII 204 Query: 147 MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV 206 + RV+D P+ +G G I P +GKT+ LQ++A+ A V++ Sbjct: 205 EKLEPVEPLITGMRVIDTMFPMAKGGTGAIPGPFGSGKTVTLQSLAKWSAAK----VVIY 260 Query: 207 LLIDERPEEVTEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKR 252 + ER E+TE+ + + ++A+T + P + I A+ Sbjct: 261 IGCGERGNEMTEVLETFPKLTDPWTGKPMMERTILIANTSNMPVAAREASIYTGITLAEY 320 Query: 253 LVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNV---- 307 + DV+++ DS +R A A + ++ G + R F+ A V Sbjct: 321 YRDMGYDVLLVADSTSRWAEALREIAGRLEEMPAEEGYPSYLASRLAEFYARAGRVKVPG 380 Query: 308 --EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT 365 E GS+TI+ G E + K + L ++A R +PAI++ S + Sbjct: 381 RPERLGSVTIVGAV-SPPGGDFTEPVTANTKRFIRVFWALDARLAYSRHYPAINWLVSYS 439 Query: 366 RKEELL-------TTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 E + + + L+ +I+ E+ + L+ +++ + E+ Sbjct: 440 AYVETVAKWWHENISPKWLEYRNEAYEILLREDELREIVRLVGTEGLSEKDKLILEIAN 498 >UniRef50_C6P430 H+transporting two-sector ATPase alpha/beta subunit central region n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P430_9PROT Length = 599 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 76/435 (17%), Positives = 147/435 (33%), Gaps = 62/435 (14%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSP 83 E +R + + A+ + + + +Q ++ I P Sbjct: 50 EPTESLRPGEPVVALGHPLSVELGPGLLGNIFDGVQRPLLEHAQQHGDFIPRGVHI---P 106 Query: 84 SQIR--------RFNLRTGDTISG-----------------KIRPPKEGE----RYFALL 114 S R + L+ G + G + P K+GE + Sbjct: 107 SLNRSKLWHFEPQLGLKIGSHVEGGTILGTVQETQTILHRILVPPGKDGELTELAGAGDI 166 Query: 115 KVNEVNFDKPENARNKILFE--NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ 172 V+ V + N + + P+ R R+LD P+ +G Sbjct: 167 TVDAVVAKVKDAKGNISELQLFHRWPVRIPRPYRNRDNAVEPLLTGQRILDTFFPLVKGG 226 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR----------- 221 R + P AGKT++ Q IA+ + +++ + ER E+ ++ Sbjct: 227 RAAVPGPFGAGKTIVQQQIARWSDAD----IVIYVGCGERGNELVDILESFPKLTDPNTG 282 Query: 222 ---LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVV 278 + + +VA+T + P + A+ + DV+++ DS +R A A V Sbjct: 283 RSLMERTLLVANTSNMPVVAREASIYVGATLAEYYRDQGYDVVMVADSTSRWAEALREVA 342 Query: 279 PASGKVL-TGGVDANALHRPKRFFGAARNV----EEGGSLTIIATALIDTGSKMDEVIYE 333 G++ G A R F+ A V GS+T+I G E + Sbjct: 343 GRLGQMPVEEGYPAYLASRLAAFYERAGRVTTLSGNSGSITLIGAV-SPPGGDFSEPVTS 401 Query: 334 EFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQEELQKMWILRK--IIHP 389 K LS+++A+ R +PA+D+ S + E + W + + Sbjct: 402 HTKEITKTFWALSKELADARHYPAVDWVESFSGYVASCSGWWAENVDPRWESHRATALGI 461 Query: 390 MGEIDAMEFLINKLA 404 + + D + ++N + Sbjct: 462 LSQADELARIVNLVG 476 >UniRef50_Q83MV6 Transcription termination factor Rho n=2 Tax=Tropheryma whipplei RepID=Q83MV6_TROWT Length = 454 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 120/345 (34%), Positives = 195/345 (56%), Gaps = 10/345 (2%) Query: 44 KSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRP 103 S + + GVL++L D F+R+ + Y G DIYVS SQ+++++LR GD ++G++ Sbjct: 110 DSSQLVPIAGVLDVL-DSCAFIRT--TGYSPGDSDIYVSLSQVKKYSLRKGDAVAGEVAR 166 Query: 104 PKEGERY----FALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTA 159 K + Y F L+ VN VN + + + FE+ + RL R T + Sbjct: 167 VKSIDSYKQRHFPLVSVNTVNGLEFQQVTTRPAFESGMCVPPTRRL---RITPKTAPVEK 223 Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 R++DL SP+ +G RGL+ P K+G+T +L IA + + + L+ LL+ RPEE T M Sbjct: 224 RIVDLVSPVAKGTRGLVRGPSKSGRTTVLHEIAAGLCEQNKELHLITLLVGIRPEEATHM 283 Query: 220 QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVP 279 R ++GEVV S+ + V VAE+V+E++KRLVE +DV++++DS+T L RAY V Sbjct: 284 SRTLRGEVVVSSMECSPEEQVGVAELVLERSKRLVEQGRDVLLIVDSMTHLGRAYALVGA 343 Query: 280 ASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTG 339 +++ + +AL FF +AR +E GS+T++AT L ++ S D ++ + Sbjct: 344 PPSRLIGSAAELSALRPITSFFLSARCIENSGSITMLATVLSESESAFDRLVEYDLVAVS 403 Query: 340 NMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILR 384 M+L L + +E+R FPAI+ RS +R E L + E ++ LR Sbjct: 404 GMQLVLDKLASERRDFPAINPIRSSSRDEFTLLSASEQSEVKRLR 448 >UniRef50_P06576 ATP synthase subunit beta, mitochondrial n=4569 Tax=root RepID=ATPB_HUMAN Length = 529 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 61/337 (18%), Positives = 125/337 (37%), Gaps = 21/337 (6%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 L G + P K L ++ V +P + R I + P+HA + ME Sbjct: 118 GLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG-EPIDERGPIKTKQFAPIHAEAPEFMEM 176 Query: 150 GN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 +V+DL +P +G + + GKT+L+ + ++A H + Sbjct: 177 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAG 235 Query: 209 IDERPEEVTEMQ-------------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 + ER E ++ K +V +EP +VA + A+ + Sbjct: 236 VGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRD 295 Query: 256 H-KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSL 313 +DV++ +D+I R +A + V G++ + G ++ GS+ Sbjct: 296 QEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKK-GSI 354 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE-LLT 372 T + + + + + LSR IAE ++PA+D S +R + + Sbjct: 355 TSVQAIYVPA-DDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIV 413 Query: 373 TQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 E ++KI+ + + ++ +++ + Sbjct: 414 GSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEED 450 >UniRef50_Q2NVI5 Type III secretion apparatus SpaL/InvC n=11 Tax=Proteobacteria RepID=Q2NVI5_SODGM Length = 435 Score = 244 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 71/342 (20%), Positives = 131/342 (38%), Gaps = 30/342 (8%) Query: 87 RRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLR 146 + F G+ + G + P ++ P+ + Sbjct: 84 KPFQFPLGEALLGAVLDPLGNICARLDGATETA-----------LIATEHRPIDVEALHF 132 Query: 147 MERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLM 205 ER R +D G GQR I A GKT L+ + + + V + Sbjct: 133 SEREPIAEKLITRIRAIDGLLTCGHGQRLGIFAAAGCGKTSLMNMLIEHSEAD----VYV 188 Query: 206 VLLIDERPEEVTEMQRLVKG-------EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK 258 V LI ER EVTE +K +V ST D + A++ A+ + K Sbjct: 189 VGLIGERGREVTEFIEELKHSSRSGKVVLVNSTSDRSSVERCNAAQVATTVAEYFRDQGK 248 Query: 259 DVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIA 317 +V++ +DSITR ARA + + G++ G A+ R + + + GS+T Sbjct: 249 NVLLFIDSITRYARALRDMALSMGELPARRGYPASVFERLPKLLERPGSS-QLGSITAFY 307 Query: 318 TALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEEL 377 T L++ + + I +E + + ++LS +A + +PAID RS +R +T +++ Sbjct: 308 TVLLENEEE-PDAIGDEVRSILDGHIYLSHTLAAQGHYPAIDILRSTSRLFLQITDKQQQ 366 Query: 378 QKMWILRKIIHPMGEIDAMEFLINKLAMTKT-NDDFFEMMKR 418 + R ++ M+ ++ + N + + Sbjct: 367 RAAVRFRDLLVR---QRDMQLYLDLGEYRRGENQENDNAFDK 405 >UniRef50_Q9GS23 ATP synthase subunit alpha n=10 Tax=Trypanosomatidae RepID=Q9GS23_TRYBB Length = 585 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 57/365 (15%), Positives = 122/365 (33%), Gaps = 35/365 (9%) Query: 51 GDGVLEILQDG-FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGER 109 V + +DG G + + + + + + ++ G + GK+ P E Sbjct: 91 AGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGQL---LHIPVGAGVLGKVVNPLGHEV 147 Query: 110 YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVLDLASPI 168 L+ ++L L + + + R + + +D PI Sbjct: 148 PVGLV-----------TRSRRLLDSTLGKVDTGAPNIVSRSPVNYNLLTGFKAVDTMIPI 196 Query: 169 GRGQRGLIV-APPKAGKTMLLQNIAQSIAYNHPD------CVLMVLLIDERPEEVTEMQR 221 GRGQR LI + GKT + + + + + + + I +R V + R Sbjct: 197 GRGQRELICNGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHR 256 Query: 222 LV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAY 274 L+ V+A+T EPA + + + + + + D +++ A AY Sbjct: 257 LLQSYGALRYTTVMAATAAEPAGLQYLAPYAGVTMGEYFMNRGRHCLCVYDDLSKQAVAY 316 Query: 275 NTVVPASGKVLTG-GVDANALHRPKRFFGAARNV---EEGGSLTIIATALIDTGSKMDEV 330 + + + + R A + + GGS+T + + + Sbjct: 317 RQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKGGGSVTALPIVET-LSNDVTAY 375 Query: 331 IYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390 I + +++L K+ PA++ S +R L+ I+ Sbjct: 376 IVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQNAAMKGVAGKLKGILAEY 435 Query: 391 GEIDA 395 ++ A Sbjct: 436 RKLAA 440 >UniRef50_A3DHP0 V-type ATP synthase alpha chain n=14 Tax=cellular organisms RepID=VATA_CLOTH Length = 589 Score = 243 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 71/446 (15%), Positives = 163/446 (36%), Gaps = 60/446 (13%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSP 83 E A + + + + + + + + +Q +R S + D+ + Sbjct: 53 EETAGLGPGEPVVSTGAPLSVELGPGLIENIFDGIQRPLVKMREMVGSNITRGIDV-TAL 111 Query: 84 SQIRRFN----LRTGDTIS-----GKIRPPKEGER-----YFALLKVNEVNFD--KPENA 127 + ++++ ++ GD ++ GK++ E Y + E+ E Sbjct: 112 DRSKKWDFQPTVKKGDKVTAGDVIGKVQETSIVEHRIMVPYGVQGTIEEIKSGSFTVEET 171 Query: 128 RNKILFEN----------LTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIV 177 K+ EN P+ R + + RV+D P+ +G + Sbjct: 172 VAKVRTENNELVDICMMQKWPVRIGRPYREKLPPNAPLVTGQRVIDTLFPLAKGGVAAVP 231 Query: 178 APPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LV 223 P +GKT++ +A+ + +++ + ER E+T++ + + Sbjct: 232 GPFGSGKTVVQHQLAKWADAD----IVVYIGCGERGNEMTDVLKEFPELKDPKTGESLMK 287 Query: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283 + ++A+T D P + + A+ + V ++ DS +R A A + + Sbjct: 288 RTVLIANTSDMPVAAREASIYTGMTIAEYFRDMGYSVALMADSTSRWAEALREMSGRLEE 347 Query: 284 VLT-GGVDANALHRPKRFFGAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFK 336 + G A R +F+ A V G+LT I G + E + + Sbjct: 348 MPGEEGYPAYLGSRLAQFYERAGRVVCLGSDGREGALTAIGAV-SPPGGDLSEPVTQATL 406 Query: 337 GTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL---TTQEELQKMWILR----KIIHP 389 + L +A +R FPAI++ +S + +++ ++ + LR +I+ Sbjct: 407 RIIKVFWGLDSSLAYRRHFPAINWLQSYSLYLDIIGKWISENISRDWETLRSDTMRILQE 466 Query: 390 MGEIDAMEFLINKLAMTKTNDDFFEM 415 E++ + L+ A++ ++ E Sbjct: 467 EAELEEIVRLVGVDALSPSDRLTLEA 492 >UniRef50_Q9G8S6 ATP synthase F1 subunit alpha n=1 Tax=Naegleria gruberi RepID=Q9G8S6_NAEGR Length = 550 Score = 241 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 66/389 (16%), Positives = 126/389 (32%), Gaps = 44/389 (11%) Query: 44 KSGEDIFGDGVLEILQ-DGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR 102 KS E VL + + + + S+L D +Y + ++ + G + G++ Sbjct: 40 KSQESNLLGQVLNLEKSQVRIVMINGQQSHLKSNDLVYRTYKDVKT---KAGYGVLGRVV 96 Query: 103 PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARV 161 P GE Y NE +FD+ + I + + +ER V Sbjct: 97 SPL-GECY------NEEDFDELSYLFDDISLIEDVSVEIPAPGIIEREPVRVPFLTGINV 149 Query: 162 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV------------------ 203 +D P+G GQR LI+ GKT L + + + Sbjct: 150 VDCLIPVGCGQRELIIGDQNTGKTSLAISAVLNQRLVNNVIHKKWRALESEIKIDRHSNF 209 Query: 204 --LMVLLIDERPEE-------VTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV 254 + + + R E + +M L +V S D+ A+ + Sbjct: 210 ITCIYVTVGTRRSEGARLKKILDKMGALNYTSMVFSHADQAAALQFMAPYAGCAIGEWFR 269 Query: 255 EHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAAR---NVEEG 310 I++ D +++ A AY + + + + R A + Sbjct: 270 NKGYRAIVVYDDLSQHAVAYRQMSLLLKRPPGREAYPGDVFYVHSRLLERAAQLHRNKGA 329 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEEL 370 GSLT + G + I + ++ LS ++A + V PA++ S +R Sbjct: 330 GSLTALPVIET-KGGDISAYIPTNVISITDGQIFLSSQLANQGVRPAVNVGLSVSRVGSS 388 Query: 371 LTTQEELQKMWILRKIIHPMGEIDAMEFL 399 ++ +++E L Sbjct: 389 AQYTSVNGISKKIKADYSMFKTYESVEKL 417 >UniRef50_B5Y829 ATP synthase subunit alpha n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y829_COPPD Length = 493 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 59/396 (14%), Positives = 116/396 (29%), Gaps = 14/396 (3%) Query: 16 TLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAG 75 + + + + ++ + F + A +G+ I + Sbjct: 2 EVKRELPFRIVVQPQRLEKKF-YGRVVAYRDGIATVEGLGNIGYYETVQFEEGAKGIVMD 60 Query: 76 PDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFEN 135 D +S + G+ P Y L KV + + Sbjct: 61 V-DPQLSYVVTTSGEVHIGEMCLATGEVPAIPVGYDVLGKVLDPLG-NVLEGDTFTPAQV 118 Query: 136 LTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 195 L + +D+ P+G GQR LI+ + GKT L +I + Sbjct: 119 YPVERPAKPLYERSRVNEPVETGIAAIDMLIPVGHGQRELILGDRQVGKTTLATDILINQ 178 Query: 196 AYNHPDCVLMVLLIDERPEEVTEMQRL-------VKGEVVASTFDEPASRHVQVAEMVIE 248 D + + + I ++ + + + +V + +PA Sbjct: 179 K--GKDVIGVYVSIGQKVSDTAAIINSFKVNDVMDQVVMVVAAASDPAIVRFLAPYAGAS 236 Query: 249 KAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV 307 A+ +E + VII+ D +++ A +Y + + + + R A + Sbjct: 237 IAEYFMEQGRKVIIVFDDLSKHAVSYRELTLLLRRPPGREAYPGDIFYAHSRLLERAAKL 296 Query: 308 EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRK 367 GGS+T G I + +L L + PAI+ S +R Sbjct: 297 TNGGSITAFPICETQLG-DFSAYIPTNLISITDGQLFLDSGLFNAGRRPAINIGLSVSRV 355 Query: 368 EELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKL 403 + LR + E+ KL Sbjct: 356 GGAAQYPAIRKLSSGLRSTLARYEELSEFTRFGGKL 391 >UniRef50_B8H363 Flagellum-specific ATP synthase n=5 Tax=Alphaproteobacteria RepID=FLII_CAUCN Length = 444 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 138/337 (40%), Gaps = 24/337 (7%) Query: 82 SPSQIRRFNLRTGDTISGKIRPPKEGERYFA----LLKVNEVNFDKPENARNKILFENLT 137 + + + F G +IR EG L ++ + + E Sbjct: 63 TRALLMPFGPVEGVGPGAEIRIVPEGAVVRPTKAWLGRIINAFGEPIDGLGPLPQGEVPY 122 Query: 138 PLHANSRLRMERGN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 196 PL RG G DL R +++ + RGQR I A GK++LL +A+ Sbjct: 123 PLKTPPPPAHARGRVGERLDLGVRSMNVFTTTCRGQRLGIFAGSGVGKSVLLSMLAKEAT 182 Query: 197 YNHPDCVLMVLLIDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEK 249 + ++V LI ER EV E GE VV +T DEPA Q A M + Sbjct: 183 CD----AVVVGLIGERGREVREFVEETLGEEGLRRAVVVVATSDEPALTRRQAAYMTLAI 238 Query: 250 AKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARN-- 306 ++ + + ++V+ L+DS+TR A A + A+G+ T G + A Sbjct: 239 SEFMRDQDQEVLCLMDSVTRFAMAQREIGLAAGEPPTTKGYTPTVFTELPKLLERAGPGP 298 Query: 307 VEEGGS----LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 362 + G+ +T + T L+D G +E I + +G + + + R IAE+ FPAI+ + Sbjct: 299 IRPDGTTAAPITALFTVLVD-GDDHNEPIADATRGILDGHIVMERAIAERGRFPAINVLK 357 Query: 363 SGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 S +R E + R+++ ++ + + Sbjct: 358 SISRTMPGCQHPHERDIVKGARQVMSAYSNMEELIRI 394 >UniRef50_Q4S553 Chromosome 6 SCAF14737, whole genome shotgun sequence n=9 Tax=Deuterostomia RepID=Q4S553_TETNG Length = 757 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 65/383 (16%), Positives = 133/383 (34%), Gaps = 69/383 (18%) Query: 74 AGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILF 133 G DI VSP + R + PP++ F + V + E + K Sbjct: 197 PGHYDISVSPPRPRLH----------RDPPPRDARVCFCQ---DVVMELEFEGVKEKFTM 243 Query: 134 ENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 193 + P+ + + RVLD P +G I GKT++ Q++++ Sbjct: 244 VQVWPVRQVRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTAIPGASGCGKTVISQSLSK 303 Query: 194 SIAYNHPDCVLMVLLIDERPEEVTEMQR----------------LVKGEVVASTFDEPAS 237 + V++ + ER E++E+ R + + +VA+T + P + Sbjct: 304 YSNSD----VIIYVGCGERGNEMSEVLRDFPELTMEVDGKTESIMKRTALVANTSNMPVA 359 Query: 238 RHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHR 296 I ++ + +V ++ DS +R A A + ++ G A R Sbjct: 360 AREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAR 419 Query: 297 PKRFFGAA------RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNME-------- 342 F+ A N E GS++I+ G + + G ++ Sbjct: 420 LASFYERAGRVKCLGNPEREGSVSIVGAV-SPPGGDFSDPVTSATLGIVQVQKVPTSLSK 478 Query: 343 -----------------LHLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQEELQKMWIL 383 L +K+A+++ FP++++ S ++ L + + L Sbjct: 479 RPGFSPDWLLVCPPQVFWGLDKKLAQRKHFPSVNWLISYSKYTRALDEYYDKHFPEFVPL 538 Query: 384 R-KIIHPMGEIDAMEFLINKLAM 405 R K + E + + ++ + Sbjct: 539 RTKAKEILQEEEDLAEIVQLVGK 561 >UniRef50_Q05825 ATP synthase subunit beta, mitochondrial n=3356 Tax=cellular organisms RepID=ATPB_DROME Length = 505 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 126/337 (37%), Gaps = 21/337 (6%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 L G + P + L ++ V +P + R I + +HA + ++ Sbjct: 95 GLVRGQKVLDTGYPIRIPVGAETLGRIINVIG-EPIDERGPIDTDKTAAIHAEAPEFVQM 153 Query: 150 GN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 +V+DL +P +G + + GKT+L+ + ++A H + Sbjct: 154 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAG 212 Query: 209 IDERPEEVTEMQ-------------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 + ER E ++ + K +V +EP +VA + A+ + Sbjct: 213 VGERTREGNDLYNEMIEGGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRD 272 Query: 256 H-KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSL 313 +DV++ +D+I R +A + V G++ + G ++ GS+ Sbjct: 273 QEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQERITTTKK-GSI 331 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE-LLT 372 T + + + + + LSR IAE ++PA+D S +R + + Sbjct: 332 TSVQAIYVPA-DDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNII 390 Query: 373 TQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 QE ++KI+ + + ++ +++ + Sbjct: 391 GQEHYNVARGVQKILQDYKSLQDIIAILGMDELSEED 427 >UniRef50_Q2SNG7 ATP synthase subunit alpha 1 n=10 Tax=Bacteria RepID=ATPA1_HAHCH Length = 494 Score = 240 bits (612), Expect = 8e-62, Method: Composition-based stats. Identities = 59/368 (16%), Positives = 126/368 (34%), Gaps = 35/368 (9%) Query: 39 LKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIS 98 +++ + G V ++ ++ G + + L +++ + R L D++ Sbjct: 53 MEELLDFEDGSLGM-VFDLCEELVGAVILQQTGSLTAGQEVHRTR---RPLGLLAHDSLL 108 Query: 99 GKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERG-NGSTEDL 157 G++ P +P + ++ + L++ + +ER Sbjct: 109 GRVIDPT----------------GRPLDGQSPLHEGAWVNLNSPTPAIVERDFVHEPLYT 152 Query: 158 TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERP---- 213 R++D PIGRGQR LI+ G+T + N D + +LI ++ Sbjct: 153 GIRMIDAMIPIGRGQRQLIIGDEGLGRTSIALNAVLHQ--KDKDVRCIYVLIGQKRGAAV 210 Query: 214 ---EEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 270 + + +V + P A + + V+++ D ++ Sbjct: 211 NVMQTLQRHGADAYTTLVVADAGSPPGLQYLAPFAGSALASHWMRQGRHVLMVYDDLSSH 270 Query: 271 ARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV---EEGGSLTIIATALIDTGSK 326 AR+Y + + + R A + + GGSLT + A G + Sbjct: 271 ARSYRELSLLLRRPPGREAYPGDVFSVHARLLEQATCLSPEQGGGSLTALPIAETQQG-E 329 Query: 327 MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKI 386 + I + +++L R + V PAID RS +R + ++ Sbjct: 330 IAAYIPTNLISITDGQIYLERSLFAAGVRPAIDVGRSVSRIGGKAQHPAIKHEAIRMKLD 389 Query: 387 IHPMGEID 394 E++ Sbjct: 390 YSRFLELE 397 >UniRef50_Q3J9F3 V-type ATP synthase alpha chain n=6 Tax=cellular organisms RepID=VATA_NITOC Length = 591 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 73/432 (16%), Positives = 148/432 (34%), Gaps = 56/432 (12%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY-VS 82 E +R + + A+ + V + +Q G L A ++ I + Sbjct: 50 EGTESVRPGEEVEALGHPLSVELGPGLLGQVFDGIQRPLGRLLEASGDRISRGIQIQGLE 109 Query: 83 PSQIRRFN----LRTGDTISGKIRPPKEGERYFALLKVNEVNF--DKPENARNKILF--- 133 +++ RF L G ++G + E ++ + + + Sbjct: 110 QARVWRFQPNPQLAAGMAVTGGVCLGAVPETPTIEHRILVPPGLSGELLELAPEGEYRLS 169 Query: 134 ------------------ENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGL 175 + P+ + S R+LD P+ +G + Sbjct: 170 DVIARLDMGDHRSQALTLSHRWPVRNPRPYQQREHGVSPLMTGQRILDTFFPLLKGGKAA 229 Query: 176 IVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------------- 221 + P AGKTM+ Q IA+ + +++ + ER E+ E+ Sbjct: 230 VPGPFGAGKTMVQQQIARWSNAD----IVIYVGCGERGNELVEVLDSFPELTDPHTGRSL 285 Query: 222 LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPAS 281 + + +VA+T + P + + + + DV+I+ DS +R A A V Sbjct: 286 MERTLLVANTSNMPVVAREASLYVGVTLGEYYRDQGYDVVIVADSTSRWAEALREVAGRL 345 Query: 282 GKVL-TGGVDANALHRPKRFFGAARNVE----EGGSLTIIATALIDTGSKMDEVIYEEFK 336 G++ G A R F+ A V+ GS+T+I G E + K Sbjct: 346 GQMPVEEGYPAYLASRLAAFYERAGRVQTLGGSVGSVTLIGAV-SPPGGDFSEPVTSHTK 404 Query: 337 GTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQEELQKMWILRK--IIHPMGE 392 LS+ +A+ R +PA+ + S + + E + K W + + + + Sbjct: 405 EIVRTFWALSKDLADARHYPAVSWRESFSDDIPVAARWWAEHIDKHWQAGRAEAMTLLTQ 464 Query: 393 IDAMEFLINKLA 404 + + ++N + Sbjct: 465 AEELSRIVNLVG 476 >UniRef50_A6QSP8 Vacuolar ATP synthase catalytic subunit A n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6QSP8_AJECN Length = 636 Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 61/414 (14%), Positives = 153/414 (36%), Gaps = 49/414 (11%) Query: 28 RMRKQDIIFAILKQHAKSGEDIFGD--GVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQ 85 R+ ++ +++ A + G++E + DG ++ + IY+ Sbjct: 132 RVGYDQLVGEVIRIDADKATIQVYEETGLMETIYDG---IQRPLKAISDASQSIYIP--- 185 Query: 86 IRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKP--ENARNKILFENLTPLHANS 143 G +I R K + + + N +L ++ L + Sbjct: 186 -------RGISIPALDREKKWDFKPANFKVGDHITGGDIWGSVWENSLLNDHKILLPPRA 238 Query: 144 RLRMER-GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC 202 R + R + + ++L++ +G I GKT++ Q++++ + Sbjct: 239 RGTITRIAGPGSYTVDEKLLEVEFDGVQGGTVCIPGAFGCGKTVISQSVSKFSNSD---- 294 Query: 203 VLMVLLIDERPEEVTEMQR----------------LVKGEVVASTFDEPASRHVQVAEMV 246 +++ + ER E+ E+ + + ++A+T + P + Sbjct: 295 IIVYVGCGERGNEMAEVLMDFPELSINIDGRKEPIMKRTCLIANTSNMPVAAREASIYTG 354 Query: 247 IEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAA- 304 I A+ + K+V ++ DS +R A A + G++ G A + F+ A Sbjct: 355 ITVAEYFRDQGKNVAMMADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAG 414 Query: 305 -----RNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID 359 + E GS++I+ G + + G + L +K+A+++ FP+I+ Sbjct: 415 LSIALGSPERKGSVSIVGAV-SPPGGDFSDPVTSSTLGIVQVFWGLDKKLAQRKHFPSIN 473 Query: 360 YNRSGTRKEELL---TTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 + S ++ +L ++ + + +I + + ++ ++ + + D Sbjct: 474 TSVSYSKYTNVLDKYYAKDHPEFPRLRDRIKELLTNSEDLDQVVQLVGKSALGD 527 >UniRef50_Q74MJ7 V-type ATP synthase alpha chain n=1 Tax=Nanoarchaeum equitans RepID=VATA_NANEQ Length = 570 Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 85/453 (18%), Positives = 158/453 (34%), Gaps = 71/453 (15%) Query: 17 LGENMGLEN----------LARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLR 66 +GE +G+EN ++ + +F K G G+L + DG G Sbjct: 32 IGEVIGIENDKAYIQVYEDTNGLKVGEPVFNTGKPLT----IELGPGLLANIFDGLGR-- 85 Query: 67 SADSSYLAGPDDIYVS-----PSQIRRF------NLRTGDTISGKIRPPKEGERYFALLK 115 IY+ P+ R+ + GDTI G E F Sbjct: 86 -PLKDIYEKTQSIYIPKGIDLPTLDRKKVWEFIPKKKKGDTIKGGDIIGTVNENGFEHRI 144 Query: 116 VNEVNFDKPENARNKILFE----------------NLTPLHANSRLRMERGNGSTEDLTA 159 + N + + F + P+ + + Sbjct: 145 IVPPNVEGKIEEIYEGNFTIEETIAIVNGKPIKLYHEWPIRKPRPYKEKLDYNYPFITGT 204 Query: 160 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM 219 RVLD+ PI +G + P +GKT+L Q IA+ + +++ + ER E+TE+ Sbjct: 205 RVLDIMFPIAKGGSAAVPGPFGSGKTVLNQQIAKWADSD----IVIYIGCGERGNEMTEV 260 Query: 220 QR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLD 265 + + ++A+T + P + + + + V++ D Sbjct: 261 LEEFPKLKDPKTGKPLMYRTILIANTSNMPIAAREASIYLGATIGEYFRDQGYSVVVNAD 320 Query: 266 SITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEE----GGSLTIIATAL 320 S +R A A + G++ + G A L + F+ + V GSLTII Sbjct: 321 STSRWAEALREISSRLGEIPSEEGYPAYLLRKLAEFYERSGRVRTLNDLEGSLTIIGAV- 379 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQEELQ 378 G E + + L K+A KR +PAI+Y S T++ E + +E + Sbjct: 380 SPPGGDFSEPVTQNTLRLVGALWALDSKLAYKRHYPAINYLISYTKQWEFVKKYFEELYE 439 Query: 379 KMWILRKI-IHPMGEIDAMEFLINKLAMTKTND 410 + +R+ + + +++ + +D Sbjct: 440 DVIEIREEFFAILKRESELMDIVSIVGPDALSD 472 >UniRef50_P46561 ATP synthase subunit beta, mitochondrial n=70 Tax=cellular organisms RepID=ATPB_CAEEL Length = 538 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 59/337 (17%), Positives = 126/337 (37%), Gaps = 21/337 (6%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 L G ++ P K L ++ V +P + R I +N +HA + +E Sbjct: 127 GLVRGQPVADTGDPIKIPVGPETLGRIMNVIG-EPIDERGPIASKNFAAIHAEAPEFVEM 185 Query: 150 GN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 +V+DL +P +G + + GKT+L+ + ++A H + Sbjct: 186 SVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAG 244 Query: 209 IDERPEEVTEMQ-------------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 + ER E ++ + K +V +EP +V + A+ + Sbjct: 245 VGERTREGNDLYHEMIEGGVIDLKGKNSKVSLVYGQMNEPPGARARVCLTGLTVAEYFRD 304 Query: 256 H-KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSL 313 +DV++ +D+I R +A + V G++ + G ++ GS+ Sbjct: 305 QEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGSMQERITTTKK-GSI 363 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE-LLT 372 T + + + + + LSR IAE ++PA+D S +R + + Sbjct: 364 TSVQAIYVPA-DDLTDPAPATTFAHLDATTVLSRGIAELAIYPAVDPLDSTSRIMDPNVV 422 Query: 373 TQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 Q ++KI+ + + ++ +++ + Sbjct: 423 GQNHYDIARGVQKILQDYKSLQDIIAILGMDELSEED 459 >UniRef50_A3MXY7 V-type ATP synthase alpha chain n=12 Tax=Archaea RepID=VATA_PYRCJ Length = 594 Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats. Identities = 56/295 (18%), Positives = 112/295 (37%), Gaps = 30/295 (10%) Query: 135 NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 194 + P+ R + RV+D PI +G + P +GKT+ + ++ Sbjct: 193 HKWPVRRPRPFREKLPPVEPLITGVRVIDTMFPIAKGGTAAVPGPFGSGKTV----MIRT 248 Query: 195 IAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVASTFDEPASRHV 240 ++ +++ +L ER E + + L + ++ +T + P + Sbjct: 249 LSMFAQSRIIIPVLCGERGNEAADALQGLLKLKDPSTGRPLLERTTIIVNTSNMPVAARE 308 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKR 299 M + + DV++L DS +R A A V G++ + G A R Sbjct: 309 ASVYMGTTLGEYFRDQGYDVLVLADSTSRWAEAMREVALRIGEMPSEEGYPAYLPTRLAE 368 Query: 300 FFGAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKR 353 F+ A V E GSLTI A+ G E + LS ++A R Sbjct: 369 FYERAGRVVLIGSGERVGSLTIAASV-SPPGGDFTEPVTSNTLRFIGAFWPLSPRLAYSR 427 Query: 354 VFPAIDYNRSGTRKEELL---TTQEELQKMWILRKII-HPMGEIDAMEFLINKLA 404 +PAID+ + +R + + ++ + +R ++ + + ++ ++ L Sbjct: 428 HYPAIDWLMAFSRYVDTVEVWWSKNVSPEWRRIRDVLQSILVKEAELQEIVRILG 482 >UniRef50_A3CK48 V-type ATP synthase alpha chain n=144 Tax=cellular organisms RepID=VATA_STRSV Length = 596 Score = 237 bits (604), Expect = 7e-61, Method: Composition-based stats. Identities = 67/475 (14%), Positives = 157/475 (33%), Gaps = 78/475 (16%) Query: 6 LKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSG------------EDIFGDG 53 ++ + ++ +G+ + + MR+ + ++ + G G G Sbjct: 19 MQEANIQDICRVGDLGLIGEIIEMRRDQASIQVYEETSGLGPGEPVITTGSPLSVELGPG 78 Query: 54 VLEILQDGFGFLRSADSSYLA-GPDDIYVS----PSQIRRF------NLRTGDTISGKIR 102 ++ + DG ++ + D V P+ R L GD + Sbjct: 79 LISQMFDG---IQRPLERFQTITASDFLVRGVQLPNLDREAKWDFVPGLSVGDAVEAGDV 135 Query: 103 PPKEGERYFALLKVNE---VNFDKPENARNKILFEN-------------------LTPLH 140 E ++ V+ + E P+ Sbjct: 136 LGTVQETNLVEHRIMVPVGVSGRLANISAGSFTVEETVYEIEQADGSVFKGTLMQKWPVR 195 Query: 141 ANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200 + RV+D P+ +G + P AGKT++ +A+ + Sbjct: 196 RGRPFAQKLIPVEPLVTGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQVAKFANVD-- 253 Query: 201 DCVLMVLLIDERPEEVTEMQR--------------LVKGEVVASTFDEPASRHVQVAEMV 246 +++ + ER E+T++ + + ++A+T + P + Sbjct: 254 --IVIYVGCGERGNEMTDVLNEFPELIDPTTGQSIMQRTVLIANTSNMPVAAREASIYTG 311 Query: 247 IEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAAR 305 I A+ + V I+ DS +R A A + ++ G A R ++ A Sbjct: 312 ITIAEYFRDMGYSVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRIAEYYERAG 371 Query: 306 NVE------EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID 359 V+ GS+T I G + E + + + L ++A++R FPAI+ Sbjct: 372 RVKTLGSTAREGSITAIGAV-SPPGGDISEPVTQNTLRIVKVFWGLDAQLAQRRHFPAIN 430 Query: 360 YNRSGTRKEELL--TTQEELQKMW--ILRKIIHPMGEIDAMEFLINKLAMTKTND 410 + S + + + + + W + K ++ + + ++ ++ + + ++ Sbjct: 431 WLSSYSLYLDEVGAYIDQHEKIAWAEKVTKAMNILQKESELQEIVRLVGLDSLSE 485 >UniRef50_A3NN58 ATP synthase subunit alpha 2 n=51 Tax=Proteobacteria RepID=ATPA2_BURP6 Length = 670 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 61/384 (15%), Positives = 125/384 (32%), Gaps = 17/384 (4%) Query: 26 LARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQ 85 LAR+ + AI + + F G+ + + + + + D+ +S Sbjct: 27 LARVALAPVAQAIGRVERVADGIAFVSGLEDTMLNEVLRFEGGVTGFAHTLDEDLISVVL 86 Query: 86 IRR-FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSR 144 + +R ++ + L +V + P + + + P+ + Sbjct: 87 LDPDAGVRAQTAVARTGAVLEVPAGPQLLGRVVDPLGR-PLDGGAPLDAAHTLPIERAAP 145 Query: 145 LRMERG-NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 203 +ER D ++D IGRGQR LI+ GKT L + + H D + Sbjct: 146 AIIERDLVSEPLDTGVLIVDALFTIGRGQRELIIGDRATGKTSLAIDAIVNQR--HSDVI 203 Query: 204 LMVLLIDERPEEVTEMQRLVK-------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEH 256 + + I +R V + V+ V + A+ + Sbjct: 204 CVYVAIGQRASAVRRVIDAVRRYGAPERCVFVVAPAACAPGLQWIAPFAGFSIAEYFRDR 263 Query: 257 KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE---EGGS 312 + ++++D +T+ A + + + + + + R A + GGS Sbjct: 264 GQHALVVVDDLTKHAATHRELALLTREPPGREAYPGDIFYVHARLLERAAKLSAALGGGS 323 Query: 313 LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLT 372 L+ + A D G + I + ++ L + PA+D S +R Sbjct: 324 LSALPIAETDAG-NLAAYIPTNLISITDGQIVLDSALFAANQRPAVDVGLSVSRVGGKAQ 382 Query: 373 TQEELQKMWILRKIIHPMGEIDAM 396 LR E++A Sbjct: 383 HPALRAASGRLRLDYAQFLELEAF 406 >UniRef50_Q9TAH9 ATP synthase subunit alpha n=1 Tax=Cafeteria roenbergensis RepID=Q9TAH9_CAFRO Length = 601 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 61/409 (14%), Positives = 126/409 (30%), Gaps = 60/409 (14%) Query: 54 VLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFAL 113 V+ I QD + D ++ D + I + G + G++ P Sbjct: 100 VVGIEQDYISVIIFGDERFVKVGDRV-RPRGNI--VAINVGIGLLGRVIDPLGNVLDDPT 156 Query: 114 LKVNEVNFDKPEN-----ARNKILFENLTPLHANSRLRMERG-NGSTEDLTARVLDLASP 167 V +N ++ +I+ P+ + + R +D P Sbjct: 157 RPVE-LNKSPKDDLFRNYYIGRIVTGYSRPVEIQAPGIIVRKSVNKPLLTGLNCVDSMVP 215 Query: 168 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH---------------------PDCVLMV 206 IG GQR LI+ + GKT + ++ + A+ + C + Sbjct: 216 IGLGQRELIIGDRQVGKTAVAIDMILNQAFLNETLRNSLLSSEGAVVNKLLPSKPCYCIY 275 Query: 207 LLIDERPEEVTE-----------------------MQRLVKGEVVASTFDEPASRHVQVA 243 + I ++ + L +VAS + A Sbjct: 276 VGIGQKQSTIARIAKLLKRPRTLFERNVSTKRSSVFSALNYTIIVASISSDSAPIQFLAP 335 Query: 244 EMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFG 302 + + + +I+ D +++ A AY + + + + R Sbjct: 336 YTGCTVGELFRDSGSNAVIVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 395 Query: 303 AARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID 359 A + GGSLT + + + I + ++ L ++ + + PAI+ Sbjct: 396 RAAQMSDAVGGGSLTALPIIETMA-NDVSAYIPTNVISITDGQIFLETELFNQGIRPAIN 454 Query: 360 YNRSGTRKEELLTTQEELQKMWILRKIIHPMGEI-DAMEFLINKLAMTK 407 S +R + Q L+ + E+ + +F + A TK Sbjct: 455 VGLSVSRVGSAAQFKPMKQIAGTLKLELAQYREVMEFAKFGASLDAETK 503 >UniRef50_UPI00018529F8 transcription termination factor Rho n=2 Tax=Helicobacter pylori RepID=UPI00018529F8 Length = 245 Score = 234 bits (596), Expect = 6e-60, Method: Composition-based stats. Identities = 105/225 (46%), Positives = 156/225 (69%), Gaps = 3/225 (1%) Query: 2 NLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDG 61 ++ +L+ P +L+ + + +EN ++QD++F ILK G I G+LEI+ DG Sbjct: 24 HIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDG 83 Query: 62 FGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 +GFLR D S+ G +D YVSPSQIRRF LR GD ++G++R PK+ E+Y+ALLK+ +N+ Sbjct: 84 YGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINY 143 Query: 122 DKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPK 181 + +N+ LF+NLTPL + ++++E +T R+LDL SP+G+GQR LIVAPP+ Sbjct: 144 LPSDEIKNRPLFDNLTPLFPDEQIKLE---YEPTKVTGRMLDLFSPVGKGQRALIVAPPR 200 Query: 182 AGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE 226 GKT L++ +AQ I NHP+ L++LL+DERPEEVT+MQR VKG+ Sbjct: 201 TGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQ 245 >UniRef50_A8LMQ4 Flagellum-specific ATP synthase n=32 Tax=Rhodobacterales RepID=A8LMQ4_DINSH Length = 450 Score = 234 bits (596), Expect = 6e-60, Method: Composition-based stats. Identities = 86/393 (21%), Positives = 155/393 (39%), Gaps = 35/393 (8%) Query: 45 SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRR--------FNLRTGDT 96 S + G+ + G + + + G + + +S S I F LR Sbjct: 28 SEAVVEVTGLNRHARLGDRVVLTGATGAEVGGEVVTLSGSHIEVLPEARLEGFALRDRAY 87 Query: 97 ISGK--IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN-GS 153 G+ +RP ++ + KV + + PL + R G Sbjct: 88 FQGRSEVRPSEDW-----IGKVIDPFGRC-HDGTIPAPGPTAYPLRGTPPSAITRKPLGH 141 Query: 154 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERP 213 + V + P+ RGQR + A GK+ LL + +S+ + + +V LI ER Sbjct: 142 RLETGTAVFNTFLPLVRGQRLGLFAGSGVGKSTLLGKLTRSVQAD----IAVVALIGERG 197 Query: 214 EEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDS 266 EV E + + VVA+T D+ + A + + A+ + V+ L DS Sbjct: 198 REVREFVDRTLGADGMKRAIVVAATSDQAPLLKRRAAWLAMSIAEYFRDLGGHVLFLTDS 257 Query: 267 ITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAAR-NVEEGGSLTIIATALIDTG 324 +TR A A+ V +G+ + G + A E G +T I + L+ G Sbjct: 258 VTRFAEAHREVALTAGEAPSMRGFPPSTGQMIMDLAERAGPGPEGKGDITGIFSVLV-AG 316 Query: 325 SKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILR 384 S MDE + + +G + + LSR+IAE+ FPA+D +S +R + E + + + R Sbjct: 317 SDMDEPVADILRGVLDGHVVLSREIAERGRFPAVDVLQSVSRSLPDAASAAENELLQLAR 376 Query: 385 KIIHPMGEIDAMEFLINKLAMTKTND-DFFEMM 416 + + + +I T+ +D + + Sbjct: 377 RTMGIY---ERSRLMIQSGLYTQGSDAEIDAAI 406 >UniRef50_Q15SF7 ATP synthase subunit beta 1 n=26 Tax=cellular organisms RepID=ATPB1_PSEA6 Length = 537 Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats. Identities = 58/341 (17%), Positives = 123/341 (36%), Gaps = 13/341 (3%) Query: 81 VSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLH 140 + + L G + P K L ++ V + + + + Sbjct: 67 RTIALTATQGLARGMPVEDSGGPLKVPVGPSTLSRMFNVFGAPIDGHTYQHDGKWRSVHQ 126 Query: 141 ANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200 A L + +++D+ P+ RG + + GKT+LL + ++ Sbjct: 127 APPALTKISSQLQIFETGIKIVDVLCPLERGGKAGLFGGAGVGKTVLLSEMIHNMVSQQQ 186 Query: 201 DCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRL 253 + I ER E E+ R + ++ +EP ++ + A+ Sbjct: 187 GV-SIFCGIGERCREGEELYREMKEAGVLDNMVMLFGQMNEPPGSRFRIGHAALTMAEYF 245 Query: 254 V-EHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGG 311 + KKDV++L+D+I R +A + V G++ + G N E+ G Sbjct: 246 RDDEKKDVLLLIDNIFRFIQAGSEVSGLMGQMPSRMGYQPTLGTELAGLEERIANTED-G 304 Query: 312 SLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE-EL 370 ++T I + + + L LSRK A + +PA+D +S ++ Sbjct: 305 AVTSIQAVYVPA-DDFTDPAAVHTFSHLSATLVLSRKRASEGFYPAVDPLQSSSKLATPT 363 Query: 371 LTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 411 + Q +++I+ E+ + ++ ++K + D Sbjct: 364 VVGQRHYDVARQVKQILAQYNELKDIIAMLGLEQLSKKDRD 404 >UniRef50_Q2VZN2 ATP synthase subunit beta n=40 Tax=cellular organisms RepID=ATPB_MAGSA Length = 474 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 56/337 (16%), Positives = 130/337 (38%), Gaps = 21/337 (6%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 L G + + L ++ V +P + R I + P+HA++ +++ Sbjct: 64 GLTRGTEVVDTGAAIQMPVGPETLGRIINVIG-EPIDERGPIGNKTTLPIHADAPEFVDQ 122 Query: 150 GN-GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 +V+DL +P +G + + GKT+L+ + +IA H + Sbjct: 123 STETEILVTGIKVIDLLAPYCKGGKIGLCGGAGVGKTVLIMELINNIAKAH-GGYSVFAG 181 Query: 209 IDERPEEVTEMQ-RLVKGEV------------VASTFDEPASRHVQVAEMVIEKAKRLVE 255 + ER E ++ +++ V V +EP +VA + A+ + Sbjct: 182 VGERTREGNDLYHEMIESGVIKLDGPGSKVALVYGQMNEPPGARARVALSGLTVAEYFRD 241 Query: 256 -HKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSL 313 +DV+ +D+I R +A + V G++ + G + ++ GS+ Sbjct: 242 VEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITSTKK-GSI 300 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR-KEELLT 372 T + + + + + L+R+IAE ++PA+D S +R + + Sbjct: 301 TSVQAIYVPA-DDLTDPAPATSFAHLDATTVLNRQIAELGIYPAVDPLDSTSRVLDPRVV 359 Query: 373 TQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 + Q +++I+ + + ++ +++ + Sbjct: 360 GNDHYQTARDVQRILQTYKSLQDIIAILGMDELSEED 396 >UniRef50_Q184E7 V-type ATP synthase alpha chain n=74 Tax=cellular organisms RepID=VATA_CLOD6 Length = 592 Score = 233 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 124/339 (36%), Gaps = 33/339 (9%) Query: 97 ISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED 156 + G I+ GE + V + +K + ++ P+ R ++ S Sbjct: 154 VKGTIKEIYSGE-FTVEDTVCVITDEKGNDIPVTMM--QKWPVRKERPYREKKTPDSLLV 210 Query: 157 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV 216 RV+D PI +G I P +GKT+ +A+ + +++ + ER E+ Sbjct: 211 TGQRVIDTFFPITKGGVAAIPGPFGSGKTVTQHQLAKWADAD----IVVYIGCGERGNEM 266 Query: 217 TEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 T++ + + ++A+T D P + I A+ + V + Sbjct: 267 TDVLLEFPELKDPRTGESLMQRTVLIANTSDMPVAAREASIYTGITIAEYFRDMGYSVAL 326 Query: 263 LLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNV------EEGGSLTI 315 + DS +R A A + ++ G A R +F+ A V E G+LT Sbjct: 327 MADSTSRWAEALREMSGRLEEMPGEEGYPAYLGSRLAQFYERAGKVNCLGMDEREGTLTA 386 Query: 316 IATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL---T 372 I G E + + + L +A KR FPAI++ S + +E + Sbjct: 387 IGAV-SPPGGDTSEPVSQATLRIVKVFWGLDASLAYKRHFPAINWLTSYSLYQEKVDVWA 445 Query: 373 TQEELQKMWILR-KIIHPMGEIDAMEFLINKLAMTKTND 410 + R + + + ++ ++ + + +D Sbjct: 446 DKNVNDNFSAQRAQAMKLLQVESELQEIVQLVGVDSLSD 484 >UniRef50_C5S8P1 H+transporting two-sector ATPase alpha/beta subunit central region n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S8P1_CHRVI Length = 598 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 66/307 (21%), Positives = 115/307 (37%), Gaps = 28/307 (9%) Query: 97 ISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED 156 I G++ Y + V K A +++ P+ R S Sbjct: 159 IEGELEEIAPAGEYDIESTIARVRDHK--GATHRLSLYQRWPVRKPRPYRRRDDGISPLI 216 Query: 157 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV 216 RV+D P +G +G + P AGKT++ Q IA+ + +++ + ER E+ Sbjct: 217 TGQRVIDTFFPQLKGGKGAVPGPFGAGKTVVQQQIARWSNAD----IVIYVGCGERGNEL 272 Query: 217 TEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 ++ + + +VA+T + P + I A+ + DV++ Sbjct: 273 VDVLETFPQLDDPYSGRKLMERTLLVANTSNMPVVAREASVYVGITMAEYYRDMGYDVVM 332 Query: 263 LLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVE----EGGSLTIIA 317 L DS +R A A V G++ G A R + A VE GS+T+I Sbjct: 333 LADSTSRWAEALREVSGRLGQMPVEEGYPAYLASRLAAVYERAGRVETFGAGSGSVTLIG 392 Query: 318 TALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT--RKEELLTTQE 375 G E + K LS+++A+ R +P+ID+ S + K + Sbjct: 393 AV-SPPGGDFSEPVTSHTKDIIETFWALSKELADARHYPSIDWVTSFSGHVKTAAEWWHK 451 Query: 376 ELQKMWI 382 E+ W Sbjct: 452 EIDPDWE 458 >UniRef50_C1H944 Vacuolar ATP synthase catalytic subunit A n=1 Tax=Paracoccidioides brasiliensis Pb01 RepID=C1H944_PARBA Length = 726 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 63/417 (15%), Positives = 151/417 (36%), Gaps = 56/417 (13%) Query: 32 QDIIFAILKQHAKS------GEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQ 85 ++ +++ A E G G++E + DG ++ + IY+ Sbjct: 158 DKLVGEVIRIDADKATIQVYEETELGPGLMETIYDG---IQRPLKAISDASGSIYIP--- 211 Query: 86 IRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKP--ENARNKILFENLTPLHANS 143 G +I R K + L + + N +L ++ L + Sbjct: 212 -------RGISIPALDREKKWDFKPANLKVGDHITGGDIWGSVWENSLLDDHKILLPPRA 264 Query: 144 RLRMER-GNGSTEDLTARVLDLASPIGR---GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 199 R + R + + ++L++ R I GKT++ Q++++ + Sbjct: 265 RGTITRIAGPGSYTVDEKLLEVEFDGKRYEYSGTVCIPGAFGCGKTVISQSVSKFSNSD- 323 Query: 200 PDCVLMVLLIDERPEEVTEMQR----------------LVKGEVVASTFDEPASRHVQVA 243 +++ + ER E+ E+ + + ++A+T + P + Sbjct: 324 ---IIVYVGCGERGNEMAEVLMDFPELSITIDGRKEPIMKRTCLIANTSNMPVAAREASI 380 Query: 244 EMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFG 302 I A+ + K+V ++ DS +R A A + G++ G A + F+ Sbjct: 381 YTGITVAEYFRDQGKNVAMMADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYE 440 Query: 303 AARN------VEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFP 356 A + GS++I+ G + + G + L +K+A+++ FP Sbjct: 441 RAGKSIALGSPKRIGSVSIVGAV-SPPGGDFTDPVTTSTLGIVQVFWGLDKKLAQRKHFP 499 Query: 357 AIDYNRSGTRKEELL---TTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND 410 +I+ + S ++ +L +E + + +I + + ++ ++ + + D Sbjct: 500 SINTSVSYSKYTNVLDKYYAKEHPEFPRLRNRIRELLTNSEDLDQVVQLVGKSALGD 556 >UniRef50_C6HLF6 ATP synthase subunit alpha n=1 Tax=Ajellomyces capsulatus H143 RepID=C6HLF6_AJECH Length = 522 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 121/410 (29%), Gaps = 69/410 (16%) Query: 15 ITLGENMGL-ENLARMRKQDIIFAILKQHAKSGEDIFGDGV----LEILQDGFGFLRSAD 69 G + + + +AR+ + A+ F GV + + G + Sbjct: 71 AETGRVLSVGDGIARVH------GMTNVQAEEL-VEFASGVKGMCMNLEAGQVGVVLFGS 123 Query: 70 SSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARN 129 + + + + + ++ G + G++ ++ P A+ Sbjct: 124 DRLVKEGETVKRTGEIV---DVPVGPELLGRVIDALGN----------PIDGKGPIKAKE 170 Query: 130 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 189 K + P + R V L PIGRGQ Sbjct: 171 KRRAQLKAP-----GILPRRSVNQPVQTGLSVSTLWVPIGRGQ----------------- 208 Query: 190 NIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ-------RLVKGEVVASTFDEPASRHVQV 242 + + + ++ V ++ + VVA+T E A Sbjct: 209 ---------QQKLYCVYVAVGQKRSTVAQLVKTLEENDAMKYSIVVAATASEAAPLQYIA 259 Query: 243 AEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFF 301 + ++ + +I D +++ A AY + + + + R Sbjct: 260 PFTGCAVGEWFRDNGRHALITYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 319 Query: 302 GAARNV---EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAI 358 A + +GGSLT + G + I + ++ L ++ K + PAI Sbjct: 320 ERAAKLNDNHKGGSLTALPIIETQ-GGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAI 378 Query: 359 DYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL-INKLAMTK 407 + S +R + Q L+ + E+ A + A TK Sbjct: 379 NVGLSVSRVGSAAQLKAMKQVAGSLKLFLAQYREVAAFAQFGSDLDASTK 428 >UniRef50_D2V5T0 Mitochondrial F-1-ATPase subunit n=1 Tax=Naegleria gruberi RepID=D2V5T0_NAEGR Length = 601 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 60/339 (17%), Positives = 127/339 (37%), Gaps = 24/339 (7%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRME- 148 L G + P L +V V +P + R + +N +H ++ + E Sbjct: 175 GLFRGKELVDTGGPITVPVGRETLGRVLNVLG-EPIDERGPVNAKNRYSIHRDAPVLSEQ 233 Query: 149 RGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 +++D+ P +G + + GKT+++ + +IA H + + Sbjct: 234 TTQDEILVTGIKIIDVLIPYPKGGKIGLFGGAGVGKTVVIMELINNIAKKHGGFSVFGGV 293 Query: 209 IDERPEEVTEM-------------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 ER E T++ K +V +EP +V + + A+ + Sbjct: 294 G-ERTREGTDLLLEMIQSRVIVVDGEGSKASLVYGQMNEPPGARARVGQTALSIAEYFRD 352 Query: 256 -HKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSL 313 +DV++ +D+I R +A + V G++ + G N + ++ GS+ Sbjct: 353 EEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPNLSTDIGELQERITSTKK-GSI 411 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRK-EELLT 372 T + + + + + LSR+IAE+ ++PA+D S +R Sbjct: 412 TSVQAIYVPA-DDITDPSPATTFAHLDATTVLSRQIAEQGMYPAVDALESMSRLINPSAI 470 Query: 373 TQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDD 411 + +RK + ++ +I L M + +D+ Sbjct: 471 GKYHYDTADGVRKCLQEY---QNLQDIIAILGMDELSDE 506 >UniRef50_Q0C5J4 Flagellar protein export ATPase FliI n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C5J4_HYPNA Length = 462 Score = 230 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 135/374 (36%), Gaps = 29/374 (7%) Query: 32 QDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNL 91 ++ + + +L + D L + S + D +++ + + Sbjct: 29 SELAGVGNEIVIEKQGQKIHGEILSVSGDSVTALLYSPSDIIRIGDVVHI----EQEARI 84 Query: 92 RTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN 151 GD G+I + EV + P A + + Sbjct: 85 EPGDHWLGQIINYRG-----------EVATEMPAGAGLTAKGVSRALRAPALPAHLRHRL 133 Query: 152 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 211 G V D PI RGQR + A GK+ L ++A + + +++ LI E Sbjct: 134 GPRLATGWMVTDTLLPICRGQRLGLFAGSGVGKSTFLGSLAGGLEAD----RVVIALIGE 189 Query: 212 RPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILL 264 R EV E K VV++T E + A + A+ + V+ L Sbjct: 190 RSREVGEFVNVNLPETVRHKTVVVSATASESPGAKKRAAYCAMATAEHFRDQGHSVLFLF 249 Query: 265 DSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAAR-NVEEGGSLTIIATALID 322 DSITR A A+ V +G+ + + A G +T I + L+ Sbjct: 250 DSITRFAEAHREVALLAGETPALNAFPPSTVRVIAELAERAGPGTGAKGDITGIFSVLV- 308 Query: 323 TGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWI 382 GS ++E + + +G + + LSR IAE+ +PAID +S +R E + Sbjct: 309 AGSDLEEPVADMIRGILDGHIILSRNIAERGRYPAIDVLKSVSRALPAAANDWENDLLRD 368 Query: 383 LRKIIHPMGEIDAM 396 R++I E+ M Sbjct: 369 YRRMIALYDEVAPM 382 >UniRef50_Q724W6 ATP synthase subunit alpha 1 n=17 Tax=Listeria RepID=ATPA1_LISMF Length = 498 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 62/363 (17%), Positives = 122/363 (33%), Gaps = 13/363 (3%) Query: 45 SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN-LRTGDTISGKIRP 103 S IF G+ + + ++ +V I + N + G + + Sbjct: 30 SDGVIFCSGLENAALHQAVLIDERHRGVILELNEEFVGIGLIDKTNDILEGMHVGVSGKF 89 Query: 104 PKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGS-TEDLTARVL 162 + +V + + +PL + M + + + V+ Sbjct: 90 IEVDLFEEMAGRVIDTTGKMLYEESEEKPTAT-SPLFCVTPAIMTIDSVTRPLNTGLAVI 148 Query: 163 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV-----LLIDERPEEVT 217 D +PIGRGQR LI+ ++GKT + + + + C+ + I E E + Sbjct: 149 DSITPIGRGQRQLILGNRQSGKTQIAVDTIINQHDQNVHCIYVAIGLKAAYIAEVIETLR 208 Query: 218 EMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTV 277 + VVA+ + + + A+ L + KDV+I+LD +T+ A AY + Sbjct: 209 NHGAMEYSTVVATAASDSLTAQYLTPYAGMAVAEALRDQGKDVLIILDDLTKHADAYRAI 268 Query: 278 VPASGKVLTG-GVDANALHRPKRFFGAARNV---EEGGSLTIIATALIDTGSKMDEVIYE 333 + ++ + A + GGS+T I + I Sbjct: 269 TLLFNRPPGREAYPGDSFYIHSSLLERAVQMNEEHGGGSITAIPMIET-LSDDVTAYIPT 327 Query: 334 EFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEI 393 + +L L + + PA+D S +R + L I+ E+ Sbjct: 328 NVISITDGQLFLKSDLFNRGQKPAVDVGVSVSRIGGDAQHPIIRKLSKNLTLILSQFEEL 387 Query: 394 DAM 396 + Sbjct: 388 KEL 390 >UniRef50_Q98QX5 ATP SYNTHASE ALPHA CHAIN n=2 Tax=Mycoplasma RepID=Q98QX5_MYCPU Length = 529 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 63/340 (18%), Positives = 125/340 (36%), Gaps = 29/340 (8%) Query: 87 RRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLR 146 F ++ D + G + E V + ++ +FE P++ Sbjct: 71 ELFKVKIHDNLIGSVVDVSLNE-------VLTFSKRGQDDIAILDVFEEAKPIY------ 117 Query: 147 MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMV 206 + + + +D PIGRGQ+ LI+ GKT + N + ++ + + Sbjct: 118 SRKAVNAPLETGITAIDAVLPIGRGQKQLIIGDKGTGKTAIALNAILAQEKSN--VISIY 175 Query: 207 LLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD 259 + ++ EEV E+ + K +++S+ D+ A + + + A+ +D Sbjct: 176 AAVGKKREEVVEIFSVLKSRKLMDKTIIISSSADDLAVTKYLLPYVSMSVAEHYQSLGRD 235 Query: 260 VIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE---EGGSLTI 315 V++++D +T A AY + SG + + R A GGS+T Sbjct: 236 VLVVIDDLTNHADAYREISLLSGSAPGREAYPGDIFYTHSRLLERAGKFSDEFGGGSITC 295 Query: 316 IATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQE 375 I A S + I + ++ S K+ PAID S +R + Sbjct: 296 IPIAQTLA-SDISGYIPTNLISITDGQIFTSTKLFNSGKRPAIDIGLSVSRIGSIAQKYS 354 Query: 376 ELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEM 415 +Q L+ +I + ++ TK + + E+ Sbjct: 355 MIQASKGLKTLITEFLNQKKLSSVLT--ERTKRDLEKMEL 392 >UniRef50_D2UDN1 Probable xanthomonas secretion apparatus protein n=1 Tax=Xanthomonas albilineans RepID=D2UDN1_XANAL Length = 449 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 70/305 (22%), Positives = 130/305 (42%), Gaps = 23/305 (7%) Query: 116 VNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGL 175 + N + ++ + P R + + R +D GQR Sbjct: 123 IANTNGAPFSDEPQEMPLDVAGP-----RYTDRNPHAESLWTGIRAIDGLLTCAIGQRVG 177 Query: 176 IVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-------EVV 228 I A +GK+ LL + I + V +V LI ER EV+E ++ VV Sbjct: 178 IFAAAGSGKSSLLSMLVGGIDAD----VAIVALIGERGREVSEFVEKMRHSQRADQLIVV 233 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK-VLTG 287 +T D+ A A++ + A+ + V++ LDS+TR ARA + ASG+ + Sbjct: 234 YATSDQSAVERANAAKVAMAAAEFYRDRGMHVVVYLDSLTRYARAERDIALASGEVPVKR 293 Query: 288 GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSR 347 G + R + A + GS+T T L+++ + +++ +EF+ + ++LSR Sbjct: 294 GYPLSVFDRLPKLIERAGRIH-VGSITAFYTVLLESEEE-ADMVADEFRSLLDGHIYLSR 351 Query: 348 KIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK 407 +AE +P+ID +S +R +T +++ RK + E ++ I+ + Sbjct: 352 GLAETHHYPSIDVLKSASRLFNAVTDEQQQMMAAAFRKQLARYQE---LQVYIDMGEYQR 408 Query: 408 -TNDD 411 TN + Sbjct: 409 GTNAE 413 >UniRef50_A1RX21 V-type ATP synthase alpha chain n=14 Tax=cellular organisms RepID=VATA_THEPD Length = 601 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 64/432 (14%), Positives = 143/432 (33%), Gaps = 55/432 (12%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSP 83 E+ + +R ++ + A K V + +Q + ++ + P Sbjct: 56 EDTSGLRPKEPVTATGKLLVAELGPGLMGRVFDGVQRPLKSIEELVGPFVKRGVKVNPLP 115 Query: 84 SQIRRF---NLRTGDTISGKIRPPKEGERYFALLKV----------------------NE 118 ++ +++ GD +S E +V + Sbjct: 116 RNVKWHFKPSVKVGDKVSSGDIIGVVQETPLIEHRVMVPIGVSGKVKEVVPEGDYTVEDP 175 Query: 119 VNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVA 178 V + + ++ + P+ + + + R++D PI +G G I Sbjct: 176 VVILESDGRVVELTMKQEWPVRQPRPYKERLPSEVPLLIGQRIIDTFFPIAKGGAGAIPG 235 Query: 179 PPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL--------------VK 224 GKT+ L ++ +++ + ER E+ EM + + Sbjct: 236 GFGTGKTVTLHKVSMYSDSQ----IVVYIGCGERGNEIAEMLKEFPVLVDPKSGRPIIER 291 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 ++A+T + P S M + A+ + DV ++ DS +R A A + G++ Sbjct: 292 SIIIANTSNMPVSAREASIYMGVTIAEYYRDQGYDVTLIADSTSRWAEALREIAGRLGEL 351 Query: 285 L-TGGVDANALHRPKRFFGAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKG 337 G A + F+ V E GS+T++ G +E + Sbjct: 352 PVERGYPAYLPDKIAEFYERGGRVKALGSPERSGSVTVLGAV-SPPGGDYNEPVTIHTLR 410 Query: 338 TGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWIL----RKIIHPMGEI 393 L +A +R FPAI++ +S ++ +++ R+ + + Sbjct: 411 FVGTMWALDTDLAYRRHFPAINWLKSFSQYADIIERWWVKNVSPEFPKYRRRALRLLTVA 470 Query: 394 DAMEFLINKLAM 405 +E + + + Sbjct: 471 SEIEAIASVVGE 482 >UniRef50_C4DDR2 Archaeal/vacuolar-type H+-ATPase subunit A n=2 Tax=Actinomycetales RepID=C4DDR2_9ACTO Length = 578 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 63/334 (18%), Positives = 118/334 (35%), Gaps = 35/334 (10%) Query: 96 TISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTE 155 T++G++ RY A + V A+ + + + Sbjct: 153 TLAGELEYLAPEGRYPAETVIARVAGQPVHMAQPWPVRRPRPVRN-------RLEQTAPL 205 Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 RVLDL P+ RG + GKT+LLQ +A+ + V++ + ER E Sbjct: 206 HTGQRVLDLLFPVPRGGSAAVPGGFGTGKTVLLQQVAKWCDAD----VIVYIGCGERGNE 261 Query: 216 VTEMQRLV--------------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 + E+ + + V+A+T + P + A+ + V+ Sbjct: 262 MAEVVAELLSLTDPRSGGRLADRTVVIANTSNMPMMAREASIHTGMTVAEYFRDMGLHVV 321 Query: 262 ILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVE----EGGSLTII 316 ++ DS +R A A + ++ G A F+ A VE GS+T++ Sbjct: 322 LIADSTSRWAEALREFASRNRELPAEEGYPAGLASALAAFYERAGVVETLGGRIGSVTVV 381 Query: 317 ATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQ 374 G + E + + L R +A R +P++ ++ S R E + Sbjct: 382 GAV-SPPGGDLTEPVTAYTERFVRCRWTLDRDLAYARHYPSVSWSGSFCRDAETIGAWHA 440 Query: 375 EELQKMWILR--KIIHPMGEIDAMEFLINKLAMT 406 + W R ++ + E D + L + T Sbjct: 441 AHGDRAWWARRERLTTVLSEADRLSALAELVGTT 474 >UniRef50_A3MAR7 ATP synthase subunit beta 2 n=63 Tax=Bacteria RepID=ATPB2_BURM7 Length = 534 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 125/326 (38%), Gaps = 14/326 (4%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 LR G + P + L ++ V ++ P+H + L E+ Sbjct: 96 GLRRGAAVRATGGPIRVPVGDAVLGRLLSVTGAPGDDGAALAADVERRPIHRGAPLLAEQ 155 Query: 150 GNGSTE-DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 + + +V+DL +P+ +G + + GKT+ + + ++ + + + Sbjct: 156 KSANALFATGIKVIDLLAPLAQGGKAAMFGGAGVGKTVFVMELIHAMVERYRG-ISVFAG 214 Query: 209 IDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK-KDV 260 I ER E EM L + +V +EP +V + A+ + + ++V Sbjct: 215 IGERSREGHEMLLDMRGSGVLGRTVLVYGQMNEPPGARWRVPLTALAIAEYFRDERAQNV 274 Query: 261 IILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATA 319 ++L+D++ R +A V G++ + G +VE G ++T I Sbjct: 275 LLLMDNVFRFVQAGAEVSGLLGRLPSRVGYQPTLASEVAALQERIASVE-GAAVTAIEAV 333 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT-RKEELLTTQEELQ 378 + + + + LSR +A + ++PAID S + + L+ + ++ Sbjct: 334 YVPA-DDFTDPAVTAIAAHVDSMVVLSRAMAAEGMYPAIDPVASSSILLDPLVVGEAHVE 392 Query: 379 KMWILRKIIHPMGEIDAMEFLINKLA 404 +R++I E+ + L+ Sbjct: 393 VAIEVRRVIEHYRELQDVIALLGIDE 418 >UniRef50_C0QT21 V-type ATP synthase alpha chain (V-type ATPase subunitA) n=1 Tax=Persephonella marina EX-H1 RepID=C0QT21_PERMH Length = 576 Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 63/329 (19%), Positives = 120/329 (36%), Gaps = 33/329 (10%) Query: 98 SGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDL 157 G+ Y V + +I PL R + Sbjct: 147 EGRAVYVAGEGDYTVEDTVVK------LENGTEIKMLREHPLRVPLRFKKRLKPDIPMIT 200 Query: 158 TARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVT 217 R++D PI +G I GKT+L Q +A+ + +++ + ER E+T Sbjct: 201 GQRIIDFLFPIAKGGTASIPGGFGTGKTVLQQTLAKWSDAD----LIVYIGCGERGNEMT 256 Query: 218 EMQRL--------------VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 E+ + ++A+T D P S + I A+ + V ++ Sbjct: 257 EVLNEFPQLEDPYTGKKLIERTVLIANTSDMPVSAREASIYLGITIAEYFRDMGYHVALM 316 Query: 264 LDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVE----EGGSLTIIAT 318 DS +R A A + ++ G A+ + + A VE + GS+T+I Sbjct: 317 ADSTSRWAEAIRELSARINEIPAEEGFPADLASKIASVYERAGYVEAFSGKKGSITVIGA 376 Query: 319 ALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQEE 376 G E + + + L +++A R +PAI+Y S + + + +E Sbjct: 377 V-SPPGGDFSEPVTRHTRRFTTVFWALDKELASSRFYPAINYMLSYSGYVDTVRRWWEER 435 Query: 377 LQKMWILRK-IIHPMGEIDAMEFLINKLA 404 + + LR+ +I + E D ++ ++ L Sbjct: 436 SPEWFDLREWMIKILQEDDKLQRIVKLLG 464 >UniRef50_B9L760 ATP synthase alpha/beta family, nucleotide-binding domain protein n=1 Tax=Nautilia profundicola AmH RepID=B9L760_NAUPA Length = 571 Score = 227 bits (578), Expect = 8e-58, Method: Composition-based stats. Identities = 61/308 (19%), Positives = 116/308 (37%), Gaps = 31/308 (10%) Query: 116 VNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGL 175 V +N +K + + PL + RV+D PI +G Sbjct: 164 VAVINGNKQNMIKKR-------PLRIPGSFKKRLSPKIPLITGQRVIDFMFPIAKGGSAS 216 Query: 176 IVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------------- 221 I GKT+L Q +A+ + +++ + ER E+TE+ Sbjct: 217 IPGGFGTGKTILQQTLAKYCDAD----IIIYIGCGERGNEMTEVLEEFPNLTDPYSGKPL 272 Query: 222 LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPAS 281 + + ++A+T D P S + I + + +V ++ DS +R A A + Sbjct: 273 MNRTVLIANTSDMPVSAREASIYLGITIGEYFRDQGYNVALMADSTSRWAEAMRELSSRM 332 Query: 282 GK-VLTGGVDANALHRPKRFFGAARNVE----EGGSLTIIATALIDTGSKMDEVIYEEFK 336 G+ + G A+ + + A VE GSL+II G E + K Sbjct: 333 GELPMEEGYPADISSKIASVYERASIVETFASNIGSLSIIGAV-SPAGGDFSEPVTIHTK 391 Query: 337 GTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAM 396 ++ L + +A R +PAI+Y S + E +E+ + I + + + ++ Sbjct: 392 RFTSVFWALDKSLANARFYPAINYLNSYSNYELNEWWEEKGPYIEIKQFFNDILQKDASL 451 Query: 397 EFLINKLA 404 + ++ L Sbjct: 452 QKIVKLLG 459 >UniRef50_O83541 V-type ATP synthase alpha chain 2 n=6 Tax=Bacteria RepID=VATA2_TREPA Length = 605 Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats. Identities = 55/331 (16%), Positives = 114/331 (34%), Gaps = 34/331 (10%) Query: 97 ISGKIRPP-KEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTE 155 I G + K Y ++ + +P P+ + Sbjct: 166 IRGSVLSSFKGAGAYTIDEEIGRTDLGEPL------FLSQYWPVRRARPFSKKLAVCEPL 219 Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 R +D+ P+ +G I GKTM +A+ + +++ + ER E Sbjct: 220 VTGQRAIDVFFPLSKGGTAAIPGGFGTGKTMTQHAVAKWCDAD----IIVYIGCGERGNE 275 Query: 216 VTEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 +T++ + + ++A+T + P S I A+ + V Sbjct: 276 MTDVLSEFPKLIDPRTGRSLMERTILIANTSNMPVSAREVSLYSGITLAEYYRDMGMHVA 335 Query: 262 ILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVE----EGGSLTII 316 I+ DS +R A A + ++ G A R F+ A VE GS++II Sbjct: 336 IMADSTSRWAEALRELSGRMEEMPAEEGFPAYLPTRLAEFYERAGRVETCVAREGSVSII 395 Query: 317 ATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL---TT 373 G E + + K L R++A R +PAI + S + + + + Sbjct: 396 GAV-SPLGGDFSEPVTQHTKRFIRCFWALDRELAHARHYPAIGWIDSYSEYAQEVSAWWS 454 Query: 374 QEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 + + + + + + + ++ ++ + Sbjct: 455 KYDPRAGALRAAALDLLRKEQRLQQIVRLVG 485 >UniRef50_Q71UA2 H+-ATPase beta 1 subunit (Fragment) n=14 Tax=Eumetazoa RepID=Q71UA2_HUMAN Length = 426 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 53/351 (15%), Positives = 124/351 (35%), Gaps = 33/351 (9%) Query: 93 TGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG 152 TGD + + G + K ++ A + + N P++ +SR+ E Sbjct: 73 TGDILRTPVSEDMLGRVFNGSGK--PIDKGPVVMAEDFLDI-NGQPINPHSRIYPE---- 125 Query: 153 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS----------IAYNHPDC 202 +D+ + I RGQ+ I + + I + + Y+ + Sbjct: 126 EMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYHDDNF 185 Query: 203 VLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 ++ + E + + + ++P + + + A+ L Sbjct: 186 AIVFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAY 245 Query: 256 H-KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEE-GGS 312 +K V+++L ++ A A V A +V G + A VE GGS Sbjct: 246 QCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRGGS 305 Query: 313 LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLT 372 +T I L + I + ++++ R++ ++++P I+ S +R + Sbjct: 306 ITQIP-ILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAI 364 Query: 373 T-----QEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 ++ L ++ AM+ ++ + A+T + + E +++ Sbjct: 365 GEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEALTSEDLLYLEFLQK 415 >UniRef50_P15313 V-type proton ATPase subunit B, kidney isoform n=569 Tax=root RepID=VATB1_HUMAN Length = 513 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 53/351 (15%), Positives = 124/351 (35%), Gaps = 33/351 (9%) Query: 93 TGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG 152 TGD + + G + K ++ A + + N P++ +SR+ E Sbjct: 109 TGDILRTPVSEDMLGRVFNGSGK--PIDKGPVVMAEDFLDI-NGQPINPHSRIYPE---- 161 Query: 153 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS----------IAYNHPDC 202 +D+ + I RGQ+ I + + I + + Y+ + Sbjct: 162 EMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYHDDNF 221 Query: 203 VLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 ++ + E + + + ++P + + + A+ L Sbjct: 222 AIVFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAY 281 Query: 256 H-KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEE-GGS 312 +K V+++L ++ A A V A +V G + A VE GGS Sbjct: 282 QCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRGGS 341 Query: 313 LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLT 372 +T I L + I + ++++ R++ ++++P I+ S +R + Sbjct: 342 ITQIP-ILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAI 400 Query: 373 T-----QEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 ++ L ++ AM+ ++ + A+T + + E +++ Sbjct: 401 GEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEALTSEDLLYLEFLQK 451 >UniRef50_Q0QEM9 ATP synthase subunit beta (Fragment) n=28 Tax=cellular organisms RepID=Q0QEM9_BOVIN Length = 322 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 47/274 (17%), Positives = 103/274 (37%), Gaps = 19/274 (6%) Query: 152 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 211 +V+DL +P +G + + GKT+L+ + ++A H + + E Sbjct: 1 TEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-YSVFAGVGE 59 Query: 212 RPEEVTEMQ-------------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH-K 257 R E ++ K +V +EP +VA + A+ + Sbjct: 60 RTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 119 Query: 258 KDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTII 316 +DV++ +D+I R +A + V G++ + G ++ GS+T + Sbjct: 120 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKK-GSITSV 178 Query: 317 ATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE-LLTTQE 375 + + + + LSR IAE ++PA+D S +R + + E Sbjct: 179 QAIYVPA-DDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSE 237 Query: 376 ELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 ++KI+ + + ++ +++ + Sbjct: 238 HYDVARGVQKILQDYKSLQDIIAILGMDELSEED 271 >UniRef50_A1ZPD5 ATP synthase F1, beta subunit n=2 Tax=Bacteroidetes RepID=A1ZPD5_9SPHI Length = 505 Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats. Identities = 57/406 (14%), Positives = 132/406 (32%), Gaps = 48/406 (11%) Query: 55 LEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALL 114 LE+ ++ + +L +D + + L+ G ++ K P Sbjct: 33 LEVTKENGQVVILECQQHL--GEDTVRTIAMEGTEGLQRGMDVTDKEGPISMPTGDGIKG 90 Query: 115 KVNEVNFDKPENARNKILFENLTPLHANSRLRME-RGNGSTEDLTARVLDLASPIGRGQR 173 ++ V + + + +H + + +V+DL P +G + Sbjct: 91 RLFNVVG-EAIDGIENPKTDRRVSIHRAAPTFDQLTTETEVLFTGIKVIDLLEPYAKGGK 149 Query: 174 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV---------- 223 + GKT+L+Q + +IA + + + ER E ++ R + Sbjct: 150 IGLFGGAGVGKTVLIQELINNIAKAYAGV-SVFAGVGERTREGNDLLREMIESGIVNYGE 208 Query: 224 ------------------------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVE---- 255 K V +EP +VA + A+ + Sbjct: 209 EFEKALHEGGWPLDKIDREKLKESKATFVFGQMNEPPGARARVALSGLSIAEYFRDGDGT 268 Query: 256 -HKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSL 313 D++ +D+I R +A + V G++ + G + + GS+ Sbjct: 269 GKGNDILFFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGVMQERITSTKR-GSI 327 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTR-KEELLT 372 T + + + + + LSRK+A ++PA+D S +R + Sbjct: 328 TSVQAIYVPA-DDLTDPAPATTFAHLDATTVLSRKLASLGIYPAVDPLDSTSRILTADIL 386 Query: 373 TQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 +E +++ + E+ + ++ ++ + +R Sbjct: 387 GEEHYNIAQRVKETLQRYNELQDIIAILGLDELSDDDRKVVNKARR 432 >UniRef50_D1RAU6 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RAU6_9CHLA Length = 595 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 73/446 (16%), Positives = 153/446 (34%), Gaps = 72/446 (16%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIY-VS 82 E+ ++ + + + +L+ LQ+ + +L +Y V Sbjct: 67 EDTKGVQYETDVDFVGDLLEAELGPGLLSSILDGLQNPLEKVAEHAGYFLPRG--LYLVP 124 Query: 83 PSQIRRFN----------LRTGDTI----SGK------------IRPPKEGERYFALLKV 116 + + ++ +R GDT+ G+ + V Sbjct: 125 LDRAKSWDYEPKAKVGDVVRRGDTLGTTLEGRFHHHIMVPFALYGTYKVKWVIAPGAYNV 184 Query: 117 NEVNFDKPENARNKILFE--NLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRG 174 + V + + F P+ + D R++D P+ +G Sbjct: 185 DTVVARVEDEKGQEHAFTMVQKWPIKNALFEGEKIKPTKMMDTGLRIIDTQFPVMKGGTF 244 Query: 175 LIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR------------- 221 P AGKT++ ++++ + + +++V ER EV E+ R Sbjct: 245 CTPGPFGAGKTVIQHHLSKYSSVD----IVVVTACGERAGEVVEILREFPHLTDPHTGNT 300 Query: 222 -LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPA 280 + + ++ +T P + + + A+ + DV++L DS +R A+A + Sbjct: 301 LMERTVIICNTSSMPVAARESSIYLGMTIAEYYRQMGLDVLLLADSTSRWAQALREMSGR 360 Query: 281 SGKVLT-GGVDANALHRPKRFFGAAR----NVEEGGSLTIIATALIDTGSKMDEVIYEEF 335 ++ A R F+ + E+ GS+T + A+ G +E + + Sbjct: 361 LEEIPGEEAFPAYLASRIAAFYERSGVIALRNEKQGSVT-VGGAVSPAGGNFEEPVTQAT 419 Query: 336 KGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL----------TTQEELQKMWILRK 385 L LSR+ ++ R +PAID S ++ + + Q + ILR+ Sbjct: 420 LAVVGAFLGLSRERSDSRRYPAIDPLISWSKYIDQVAKEMDSQLEGWGQVVKKAANILRR 479 Query: 386 IIHPMGEID-------AMEFLINKLA 404 ++ A+E LI L Sbjct: 480 GDEIGKRMEVVGEEGTALEDLILYLK 505 >UniRef50_A5EBX1 ATP synthase subunit beta 2 n=3 Tax=cellular organisms RepID=ATPB2_BRASB Length = 476 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 54/328 (16%), Positives = 120/328 (36%), Gaps = 14/328 (4%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 L G + P + L ++ + P+HA++ Sbjct: 71 GLSRGVSARALGTPIQTPVGDAVLGRLLNAVGKPADRGPELPPSTVFRPIHASAPALNRL 130 Query: 150 GNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 G +V+DL +P+ +G + + GKT+L+ + ++ + + + Sbjct: 131 GASQEIFHTGIKVIDLLAPLVKGGKAAMFGGAGVGKTVLIMELIRTTVERYSG-ISVFAG 189 Query: 209 IDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDV 260 I ER E E+ L + +V +EP + + A+ + ++V Sbjct: 190 IGERSREGHELLLELKQSGVLPRTALVFGQMNEPPGARWRAGLTALTIAEHFRDVQHENV 249 Query: 261 IILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATA 319 ++L+D++ RL +A V G++ + G +V G ++T I Sbjct: 250 LLLIDNVYRLVQAGGEVSGLLGRLPSRVGYQPTLASEIAELQERIASVA-GAAITSIQAV 308 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT-RKEELLTTQEELQ 378 + + E + + LSR++A + ++PA+D S + + L + + Sbjct: 309 YVPA-DDFTDPAVAEIFSHLDSSIVLSRQMASEAMYPAVDPLASSSTLLDARLVGEGHYR 367 Query: 379 KMWILRKIIHPMGEIDAMEFLINKLAMT 406 +RK I ++ + L+ ++ Sbjct: 368 TAQEVRKTIAHYRDLQEIIALLGIEELS 395 >UniRef50_Q6MAJ5 V-type ATP synthase alpha chain n=39 Tax=Bacteria RepID=VATA_PARUW Length = 593 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 73/415 (17%), Positives = 147/415 (35%), Gaps = 55/415 (13%) Query: 5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGF 64 +LK+ + L + E+ +R ++ + + LQ+ Sbjct: 46 QLKSEVIEILGNQAKIQVFEDTKGVRLGSLVSFTGDLLEAELGPGLLSSIFDGLQNPLVD 105 Query: 65 LRSADSSYLAGPDDIYVS-PSQIRRFNL----RTGDTIS--GKIRPPKEGERYFAL---- 113 + +L IY+S + R+++ + GD + +I KEG + + Sbjct: 106 VADQAGLFLPKG--IYLSALDRQRKWDFESSAKVGDVLFRGDRIGSTKEGRFHHFIMVPF 163 Query: 114 ----------------LKVNEVNFDKPENARNKILFE--NLTPLHANSRLRMERGNGSTE 155 V+ V + + + F P+ + Sbjct: 164 SLYGKYRLTWVINSGSYTVDTVVAKAIDESGQEHSFTMVQKWPVKNALIHGEKIKPTKMM 223 Query: 156 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE 215 D R++D P+ +G P AGKT+L ++++ A + +++ + ER E Sbjct: 224 DTGERIIDTQFPLMKGGTFCTPGPFGAGKTVLQHHLSKYAAVD----IVLFVACGERAGE 279 Query: 216 VTEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 V E+ R + + ++ +T P + M I A+ + DV+ Sbjct: 280 VVEVLREFPHLIDPHTDEALMKRTVIICNTSSMPVAARESSIYMGITIAEYYRQMGLDVL 339 Query: 262 ILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAAR----NVEEGGSLTII 316 +L DS +R A+A + ++ A R F+ + + GS+T I Sbjct: 340 VLADSTSRWAQALREMSGRLEEIPGEEAFPAYLSSRIAEFYERSGVVSLRHGKPGSIT-I 398 Query: 317 ATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL 371 A+ G +E + + L LSR ++ R +PAID S ++ + + Sbjct: 399 GGAVSPAGGNFEEPVTQATLSVVGAFLGLSRARSDSRRYPAIDPLLSWSKYVDTV 453 >UniRef50_C1TMJ4 Archaeal/vacuolar-type H+-ATPase subunit A n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMJ4_9BACT Length = 589 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 76/463 (16%), Positives = 155/463 (33%), Gaps = 67/463 (14%) Query: 10 PVSELITLGENMGLENLARMRKQDIIFAILKQH--AKSGEDIFGDGVL---EILQDGFGF 64 + E++ +G L + R++K + + + G+ +F G L E+ G Sbjct: 24 SMYEVVHVGRQRLLGEVVRIQKGTVDIQVYENADGIAVGDPLFFSGNLLSVELAPGLLGS 83 Query: 65 LRSADSSYLA--GPDDIY----VSPSQIRRFNL-------RTGDTIS-----GKIRP--- 103 + L G + + S + R L + GD + G + Sbjct: 84 VFDGIGRPLKVLGKEGPFLERGRSIPTVDRSKLWHFIPLLKVGDRVESGDVVGTVEECEA 143 Query: 104 ------PKEGERYFALLKVNEVNFDKPE-----NARNKILFENLTPLHANSRLRMERGNG 152 R +L + E + I + + + Sbjct: 144 VEHHIMAPPDFRSSKILSILEEGDYTVDTVLATCDGGDISMSQRWDVRRSRPVGKRLNLD 203 Query: 153 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 212 RVLD P+ G ++ GKT+ Q+IA+ + V++ + ER Sbjct: 204 RPLITGQRVLDTLFPLALGGAAVLPGGFGTGKTVTQQSIAKWCNAD----VIIYIGCGER 259 Query: 213 PEEVTEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK 258 E+TE+ + + ++A+T + P + + I A+ + Sbjct: 260 GNEMTEVLEEFPELKDPYRDAPLMDRMILIANTSNMPVAAREASVYLGITMAEYYRDMGL 319 Query: 259 DVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARN------VEEGG 311 +V I+ DS +R A A + ++ G A R ++ + E G Sbjct: 320 NVAIMADSTSRWAEALREIGGRLEEMPGEEGYPAYLGTRLAEYYERSGRSVLLGSPEREG 379 Query: 312 SLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRK---E 368 S+T+I G E + + + L + +A++R FP+I +N+S + Sbjct: 380 SITVINAV-SPAGGDFSEPVTQASLRLSGVFWALDKALAQQRHFPSIQWNQSYSLYEQEM 438 Query: 369 ELLTTQEELQKMWILRKIIH-PMGEIDAMEFLINKLAMTKTND 410 E +E + L+ + + + L+ + +D Sbjct: 439 ERFYREEVSDLWYELKAFLRGRLALERELRNLVQLVGRDGLSD 481 >UniRef50_B0B8U3 Flagellum-specific ATP synthase n=15 Tax=Chlamydiaceae RepID=B0B8U3_CHLT2 Length = 434 Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 66/334 (19%), Positives = 108/334 (32%), Gaps = 19/334 (5%) Query: 89 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRME 148 + L G + RP L +V + + + + S Sbjct: 75 YYLAIGAEVVPLRRPASLPLSNHLLGRVLDGFGNPLDGGSQLPKTNLSPLFSSPSSPMSR 134 Query: 149 RGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 R +D IG GQR I + P GK+ LL IA+ + ++ L Sbjct: 135 TPIQEVFPTGIRAIDALLTIGEGQRVGIFSEPGGGKSSLLSTIAKGSQQ----TINVIAL 190 Query: 209 IDERPEEVTEMQ-------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I ER EV + + ++AST E A+ V I A+ + V+ Sbjct: 191 IGERGREVRDYVNQHKEGLAAQRTVIIASTAYETAASKVIAGRAAITIAEYFRDQGARVL 250 Query: 262 ILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 +DS++R + V A G+ L+ A+ H F A N + GS+T L Sbjct: 251 FTMDSLSRWIESLQEVAIARGETLSTHHYAASVFHHVAEFLERAGN-NDKGSITSFYAIL 309 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 ++ + K + LS + P I+ S +R L Sbjct: 310 HYA--NHPDIFTDYVKSLLDGHFFLSPQEKSFSS-PPINVLTSLSRSSRQLALPHHYAAA 366 Query: 381 WILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFE 414 L ++ E +I A D + Sbjct: 367 QELLSLLKAYHEA---IDIIQLGAYVSGQDAHLD 397 >UniRef50_Q9BBC2 ATPase CF1 alpha subunit (Fragment) n=3 Tax=Dinophyceae RepID=Q9BBC2_AMPCA Length = 464 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 44/295 (14%), Positives = 95/295 (32%), Gaps = 16/295 (5%) Query: 125 ENARNKILFENLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAG 183 ++ + + L + + R + +D PIGRGQR LI+ + G Sbjct: 90 SGTKSSVECDMAWMLETPAPSIVSRQSVCEPLATGIVSIDAMIPIGRGQRELIIGDRQTG 149 Query: 184 KTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPA 236 KT + + ++ + + + + + ++ V + + + +V ++ A Sbjct: 150 KTSICLDTIVNLK--YEKVLSVYVPVGQKAASVLDAYQQLVKRDVYQALAIVMASASTSA 207 Query: 237 SRHVQVAEMVIEKAKRLVEH-KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANAL 294 A+ + + V I D + + A AY + + + Sbjct: 208 VMQYLSVYAGTALAEFFMYNLSLPVFIAYDDLAKQASAYREISLLLRRPPGREAFPGDIF 267 Query: 295 HRPKRFFGAARNVE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 + R + + GS+T + I + +L LS + Sbjct: 268 YVHSRLLERSAKLNYACGSGSITAFPIVETLA-QDVSAFIPTNLISITDGQLFLSTDLFN 326 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMT 406 + + PAID S TR + L+ + E++A + L Sbjct: 327 QGIKPAIDVGISVTRVGSAAQQDQMKMVAGRLKLTLAQFVELEAFSQFASDLGED 381 >UniRef50_Q3J9F4 V-type ATP synthase beta chain n=44 Tax=Bacteria RepID=VATB_NITOC Length = 479 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 49/348 (14%), Positives = 112/348 (32%), Gaps = 33/348 (9%) Query: 85 QIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSR 144 F + + G+I R D+P N P++ +R Sbjct: 74 LEEPFEIPLSPDVLGRIFDGVGAPR-----------DDRPPMIAPLKRNVNGAPVNPVAR 122 Query: 145 LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA--YNHPDC 202 +D + + RGQ+ I + L I + Sbjct: 123 AY----PQEFIQTGIAAIDGLNSLVRGQKLPIFSGSGLPHNRLAAQIVRQAKLLGEETRF 178 Query: 203 VLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV- 254 V++ + + Q L K + + D+P + + + + A+ L Sbjct: 179 VMVFAAMGVTYSDARFFQEEFENSGVLGKVVMYLNLADDPPIKRLLLPRTALACAEYLAF 238 Query: 255 EHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEG-GS 312 E V++++ +T A A V A G V + G + A ++ GS Sbjct: 239 EQDLHVLVVMTDMTHYAEALREVATAKGDVPSRKGYPGYLYSDLAEIYERAGRIKNRRGS 298 Query: 313 LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLT 372 +T++ + + + I + ++ LSR++ + ++P ++ S +R + Sbjct: 299 ITMVPVVSMPS-DDITHPIPDLTGYITEGQIVLSRELHHQGIYPPVNIPPSLSRLMKDGI 357 Query: 373 TQ-----EELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEM 415 + + + L E+ + +I ++ ++ F + Sbjct: 358 GKNSTREDHPRVASQLYAAYAKALEVRNLASIIGAEELSPSDRQFLDF 405 >UniRef50_Q9MTQ2 ATP synthase subunit beta n=2 Tax=Amphidinium RepID=Q9MTQ2_AMPOP Length = 548 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 112/304 (36%), Gaps = 28/304 (9%) Query: 131 ILFENLTPLHANSRLRMERGNGSTE-DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 189 F N P+H + ++ + + +V+D+ +P +G + + GKT+L+ Sbjct: 183 QSFANAAPIHKDQVGVLDIDITAPLFETGIKVVDVLTPYKKGGKVGLFGGAGVGKTVLIM 242 Query: 190 NIAQSIAYNHPDCVLMVLLIDERPEEVTE---------------------MQRLVKGEVV 228 + +++AY+H L I ER E + K +V Sbjct: 243 ELIRNLAYSHNGLSL-FSGIGERSREANDLYVEMQESGIILLAEDSSNPYFSAESKVALV 301 Query: 229 ASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYNTVVPASGKVLTG 287 ++ +VA + A+ + + +D+++ +D+I R +A + + G++ + Sbjct: 302 FGQMNDTPGARFRVANAALTMAEYFRDVNGQDLLVFMDNIFRFVQAGSELSTLLGRMPSA 361 Query: 288 -GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLS 346 G GS+T I + + + + LS Sbjct: 362 VGYQPTLATEMGTLQERI-VPTLFGSITSIQAVYVPA-DDITDPAPVAIFTHLDAITVLS 419 Query: 347 RKIAEKRVFPAIDYNRSGTR-KEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 R +A K ++PA+D S ++ + + + ++ E+ + ++ + Sbjct: 420 RGLAAKGIYPAVDPLASTSKALTASFVGERHYNVAQSIIQCLNRYKELQDLIAILGLDEL 479 Query: 406 TKTN 409 ++++ Sbjct: 480 SESD 483 >UniRef50_C1TMJ5 Archaeal/vacuolar-type H+-ATPase subunit B n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TMJ5_9BACT Length = 455 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 52/338 (15%), Positives = 106/338 (31%), Gaps = 22/338 (6%) Query: 89 FNLRTGDTISGKIRPP-KEGERYFALLKVNEVNFDKPENARNKILF-ENLTPLHANSRLR 146 L TGDT R K + K+ N + +ILF E+ P+ Sbjct: 63 MGLSTGDTTVWMDRDVVKVPVGMNLIGKIL--NGRGLDERGEEILFCEDRIPVSGLPINP 120 Query: 147 MER-GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA-YNHPDCVL 204 R S +D+ + + +GQ+ I A + I + ++ Sbjct: 121 ARRRSPRSFIQTGISTIDVMNTLVKGQKLPIFAGSGLPANEVTTQIVRQAKVRESSQFLV 180 Query: 205 MVLLIDERPEE-------VTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV-EH 256 + + E + KG + + A+ + M + A+ + Sbjct: 181 VFAAMGITKRESQYFIESFKRTGAIEKGVFFLNLASDSAAERLLTPRMALTVAEYFAFQK 240 Query: 257 KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEG-GSLT 314 DV++++ + A + A +V G + A +++ GS+T Sbjct: 241 GYDVLVVMTDMLHYCNALREISAAREEVPGRRGYPGYMYSDLADLYERAGSIDGSDGSIT 300 Query: 315 IIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQ 374 I M + + ++ L R + +K +FP ID S +R + Sbjct: 301 QIPII-TMPDDDMTHPVIDLSGYITEGQIVLGRDLHDKGIFPPIDVLPSLSRLMNKGIGK 359 Query: 375 E-----ELQKMWILRKIIHPMGEIDAMEFLINKLAMTK 407 + L E+ + ++ +T+ Sbjct: 360 DQTVDYHRAMADQLYSAYAKARELVKLRLIVGDDGLTE 397 >UniRef50_A3MU07 V-type ATP synthase beta chain n=5 Tax=Thermoproteaceae RepID=VATB_PYRCJ Length = 467 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 99/331 (29%), Gaps = 23/331 (6%) Query: 93 TGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERG-N 151 G T+ + K + ++ + P + E+ ++ R Sbjct: 69 KGSTVRFYGKTLKIPVSEQLIGRILDGKGQ-PRDHMPLPPPEDFRDVNGEPLNPYSREYP 127 Query: 152 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLI 209 + +D + RGQ+ I + M+ + + + + + ++ + I Sbjct: 128 EEPIETGISAIDGLYTLVRGQKLPIFSGTGLPHNMMAAQVVRQSTVRGSGEEFAVVFVGI 187 Query: 210 DERPEE-------VTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH-KKDVI 261 + EE + L + V + +P + + + + A+ L V+ Sbjct: 188 GIKTEEALFFMDEFRKTGALRRAVAVINLASDPVAERILAPRVGLTIAEYLAWQLGYHVL 247 Query: 262 ILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEG-GSLTIIATA 319 +++ +T + G++ G + A GS+T Sbjct: 248 VVMTDMTNYCEGLRELSSGKGELPGRRGYPGYMYTDLATIYERAGKAHGKKGSVTQFP-I 306 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTT-----Q 374 L + I + +L LSR + K ++P D S +R + + Sbjct: 307 LTMPNDDITHPIPDLTGYITEGQLVLSRAMWGKGIYPPFDVIMSLSRLAKDAIGEGKTRE 366 Query: 375 EELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 + L I + + L + Sbjct: 367 DHKDVANTL---IAAYSKALELRNLATLVGE 394 >UniRef50_C6G421 ATP synthase subunit alpha n=2 Tax=Heterocapsa triquetra RepID=C6G421_HETTR Length = 479 Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 51/332 (15%), Positives = 104/332 (31%), Gaps = 18/332 (5%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 + G ++G R FA+ + + ++I + + + + ++R Sbjct: 73 RISEGAKVNGMSRLASILLGDFAIGSIIDPIG-NFILNSDRIDAQYRWVIESPAPGIIDR 131 Query: 150 GNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 + +D PIGRGQR L++ + GKT + + + + + L Sbjct: 132 QSVFEPLQTGILSVDAMVPIGRGQRELVIGDRQTGKTSIGVDTILNQK--YEKVFCVYLP 189 Query: 209 IDERPEEVTEMQRLVKG-------EVVASTFDEPASRHVQVAEMVIEKAKRLV-EHKKDV 260 I ++ V E+ + ++ + A A + + + Sbjct: 190 IGQKASSVLEVYLALVRRDSVFYLSMIVAAATSSAVCQYLAAYSGAAICEFFMLVRELPA 249 Query: 261 IILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVE---EGGSLTII 316 +++D ++R A AY + + G R + + GGS T Sbjct: 250 FLMIDDLSRHAVAYREIYLLLRRPPGREGYPGEIFFVHSRLLERSAKLSTNLGGGSTTCF 309 Query: 317 ATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEE 376 G + I + ++ LS + + PAID S TR Sbjct: 310 PVIETLAG-DVSAYISTNVISITDGQIFLSTDLFLSGIKPAIDVGLSVTRVGSAAQWDGM 368 Query: 377 LQKMWILRKIIHPMGEIDAMEFL-INKLAMTK 407 + I E+ + + TK Sbjct: 369 KLVAASYKLEIAQYVELQSFSQFAADLGEETK 400 >UniRef50_Q4A6P2 ATP synthase alpha chain n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A6P2_MYCS5 Length = 514 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 54/313 (17%), Positives = 108/313 (34%), Gaps = 21/313 (6%) Query: 116 VNEVNFDKPENAR-----NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGR 170 ++ N P A+ +K TP + L + V+DL PIGR Sbjct: 88 IDIQNNIYPHKAKASLNKSKYYSSLSTPFNNPKELLNYQPLKKQLLTGYVVVDLLIPIGR 147 Query: 171 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV------K 224 GQR LI+ K GKT L N + + + + I ++ ++T +L+ Sbjct: 148 GQRQLIIGDRKTGKTFLALNTIINQK--NQGVKCIYVAIGQQHAQLTSTYQLLKENGALD 205 Query: 225 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKV 284 ++ + + + + A+ + +DV+++ D +T A Y + + K Sbjct: 206 HTIIINAPADSPYEQYLAPYVAMAHAENIA-KDEDVLVIFDDLTTHANIYREIALLTNKP 264 Query: 285 LTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 + + R + S+T + L + + +I + +L Sbjct: 265 VGKEAFPGDMFFAHSRLLERSGRFAGKKSITALP-ILQTVDNDISSLIASNIISITDGQL 323 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKL 403 + I + PAID S +R + + + + KI + L Sbjct: 324 VTNANIFQSGQLPAIDTELSVSRIGAAVQEKNMAKTSKEIGKIYKAYKRQAKLSSL---- 379 Query: 404 AMTKTNDDFFEMM 416 ND+ ++ Sbjct: 380 -KYDLNDETNALI 391 >UniRef50_Q74MS5 NEQ263 n=1 Tax=Nanoarchaeum equitans RepID=Q74MS5_NANEQ Length = 416 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 55/339 (16%), Positives = 130/339 (38%), Gaps = 22/339 (6%) Query: 95 DTISGKIRPP-KEGERYFALLKVNEVNF-----DKPENARNKILFENLTPLHANSRLRME 148 D +G+I+ ++G Y + + + +P E+ ++ + Sbjct: 45 DYYTGEIKQINRQGNTYKIAVSEDYIGGIFNGFGEPIKGPKPYP-EDYRDINGLAINPYA 103 Query: 149 RG-NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207 R +D+A P+ +GQ+ I +PP L IA+++A + ++ Sbjct: 104 RKVPNEILYTGISSIDVAHPLLKGQKIAIFSPPGLPMERLALQIARNVAKDKT---IIFA 160 Query: 208 LID-------ERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV-EHKKD 259 I +E + ++ + S D + + + A+ L E +D Sbjct: 161 AIGVPSDIYKMFIDEFINTKAIMNSAIFISKADSSPIEKIYTPRVALTLAEYLAFEKNRD 220 Query: 260 VIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIAT 318 V++L+ +T A A + ++ + G A + + + GS+T+I Sbjct: 221 VLVLMLDMTNYADALREISTLRKEIPSRRGYPAYLYTDLASIYERSGLTSK-GSITLIP- 278 Query: 319 ALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQ 378 L G+ + V+ + + LS+ + K ++P ID +S +R + +++ + Sbjct: 279 MLTMPGNDITHVVPDLTGYITEGQYVLSQDLHSKNIYPPIDLLKSLSRLAKNGMSKKHKK 338 Query: 379 KMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMK 417 IL K E + ++ + +++K + + + + Sbjct: 339 YADILIKSYAKGLEARDIATIVGEDSLSKEDKAYLKFAE 377 >UniRef50_Q5LD89 ATP synthase subunit beta n=30 Tax=Bacteroidetes RepID=ATPB_BACFN Length = 505 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 54/359 (15%), Positives = 118/359 (32%), Gaps = 46/359 (12%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRME- 148 L+ G + P ++ V D + + + +H + + Sbjct: 69 GLQRGMKVFPTGGPITMPVGEQIKGRLMNVVGDSIDGMKELNR-DGAYSIHRDPPKFEDL 127 Query: 149 RGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 +V+DL P +G + + GKT+L+ + +IA H + Sbjct: 128 TTVQEVLFTGIKVIDLLEPYSKGGKIGLFGGAGVGKTVLIMELINNIAKKHNGF-SVFAG 186 Query: 209 IDERPEEVTEMQRLV----------------------------------KGEVVASTFDE 234 + ER E ++ R + + +V +E Sbjct: 187 VGERTREGNDLLREMIESGVIRYGEAFKESMEKGHWDLSKVDYNEVEKSQATLVFGQMNE 246 Query: 235 PASRHVQVAEMVIEKAKRLVEHK-----KDVIILLDSITRLARAYNTVVPASGKVLTG-G 288 P VA + A+ + +D++ +D+I R +A + V G++ + G Sbjct: 247 PPGARASVALSGLTVAESFRDMGAKSGARDILFFIDNIFRFTQAGSEVSALLGRMPSAVG 306 Query: 289 VDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRK 348 + + GS+T + + + + + LSRK Sbjct: 307 YQPTLATEMGAMQERITST-KTGSITSVQAVYVPA-DDLTDPAPATTFTHLDATTVLSRK 364 Query: 349 IAEKRVFPAIDYNRSGTR-KEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMT 406 I E ++PA+D S +R + + QE +++I+ E+ + ++ ++ Sbjct: 365 ITELGIYPAVDPLESTSRILDPHIVGQEHYDVAQRVKQILQRNKELQDIISILGMEELS 423 >UniRef50_A6AXF1 VcsN2 n=15 Tax=Gammaproteobacteria RepID=A6AXF1_VIBPA Length = 420 Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 81/360 (22%), Positives = 140/360 (38%), Gaps = 29/360 (8%) Query: 76 PDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFAL------LKVNEVNFDKP---EN 126 + + V+ S++ L+ G G F L KV + Sbjct: 42 GEIVKVTGSKLEIKLLQPGSVQRGGKVEITPRRFCFPLNESALVGKVINCYGETLYGDSY 101 Query: 127 ARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTM 186 F +L L+M + +++D IG GQR + AP AGKT Sbjct: 102 LGQPGEFIDLPIAVEPIPLQMRAPIETVFPTKLKIIDGLFTIGEGQRLGLFAPAGAGKTT 161 Query: 187 LLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRH 239 + +A ++ + V++ +I ER EV E K + ST + Sbjct: 162 TVSIMANNMDAD----VVIFAMIGERAREVVEFLEGEIGPEVIRKSITIVSTSEANPLEK 217 Query: 240 VQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKR 299 V+ + + A+ +E K V++ DS+TR ARA + G + GG+ R Sbjct: 218 VRSGLVAVSIARYYMEQGKKVVLYFDSLTRFARAQAMLD---GTPIKGGIPIGVSLALSR 274 Query: 300 FFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAID 359 + N + GS+T I T LI+ D+ I E K + L S IA +PAID Sbjct: 275 LVESCGNSIQ-GSVTGIFTVLIEKEID-DDPIAHEVKSLIDGHLVYSTTIAATGRYPAID 332 Query: 360 YNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTND-DFFEMMKR 418 +S +R + + + ++ ++ +++ ++ LI K ND + E ++R Sbjct: 333 VLKSKSRLQNKVQEKYYVRLSEKIKDMVYRYFNVE---LLIRVGEYEKGNDLETDEAIER 389 >UniRef50_Q43433 V-type proton ATPase subunit B 2 (Fragment) n=31 Tax=Eukaryota RepID=VATB2_GOSHI Length = 386 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 47/330 (14%), Positives = 110/330 (33%), Gaps = 34/330 (10%) Query: 122 DKPENARNKILFENLTPLHANSRLRMERG-NGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 KP + IL E + +S ER +D+ + I RGQ+ + Sbjct: 8 GKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPFFSAA 67 Query: 181 KAGKTMLLQNIAQSI--------------AYNHPDCVLMVLLIDERPEEVTEMQR----- 221 + I + + ++ + E +R Sbjct: 68 GLPHNEIAAQICRQAGLVKRLEKAGDLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEEN 127 Query: 222 --LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV-EHKKDVIILLDSITRLARAYNTVV 278 + + + + ++P + + + A+ L E K V+++L ++ A A V Sbjct: 128 GSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVS 187 Query: 279 PASGKVLT-GGVDANALHRPKRFFGAARNVEE-GGSLTIIATALIDTGSKMDEVIYEEFK 336 A +V G + A +E GS+T I L + + Sbjct: 188 AAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIP-ILTMPNDDITHPTPDLTG 246 Query: 337 GTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQ-----EELQKMWILRKIIHPMG 391 ++++ R++ ++++P I+ S +R + + + L Sbjct: 247 YITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGK 306 Query: 392 EIDAMEFLINKLAMTKTN---DDFFEMMKR 418 ++ AM+ ++ + A++ + +F + +R Sbjct: 307 DVQAMKAVVGEEALSSEDLLYLEFLDKFER 336 >UniRef50_B7JY91 H+transporting two-sector ATPase alpha/beta subunit central region n=18 Tax=Bacteria RepID=B7JY91_CYAP8 Length = 607 Score = 211 bits (536), Expect = 6e-53, Method: Composition-based stats. Identities = 74/330 (22%), Positives = 121/330 (36%), Gaps = 47/330 (14%) Query: 95 DTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGST 154 DT +I+ ER L + V P+ K E L P Sbjct: 186 DTPIARIKDKNGQERSITLTQSWPVRRPLPQELLTKRYSERLYP-------------QEP 232 Query: 155 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPE 214 T R++D PI RG G I P AGKT+L I++ A + +++V+ ER Sbjct: 233 MITTQRIIDTFLPIARGGTGCIPGPFGAGKTVLQSMISRFSAVD----IVIVVACGERAG 288 Query: 215 EVTEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260 EV E + + ++ +T P + I + + DV Sbjct: 289 EVVETITEFPKMKDPKTGGSLMDRTIIICNTSSMPVAAREASIYTGITLGEYYRQMGYDV 348 Query: 261 IILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAAR----NVEEGGSLTI 315 +++ DS +R A+A ++ A K + A N GSLT+ Sbjct: 349 LLIADSTSRWAQAMRETSGRLEEIPGEEAFPAYLDSSIKAVYERAGMIRTNDGSIGSLTM 408 Query: 316 IATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL--TT 373 I T G +E + + T L LS + A KR +PA+D S +R + L Sbjct: 409 IGTV-SPAGGNFEEPVTQSTLSTVKAFLGLSAERAYKRFYPAVDILISWSRYLQQLAPWF 467 Query: 374 QEELQKMWILRKIIHPMGEIDAMEFLINKL 403 ++ + W+ R ++ M L+ + Sbjct: 468 EKNVSPGWVKR--------VEEMIDLLKEG 489 >UniRef50_A7HDG9 V-type ATP synthase alpha chain n=2 Tax=Deltaproteobacteria RepID=VATA_ANADF Length = 578 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 71/433 (16%), Positives = 138/433 (31%), Gaps = 54/433 (12%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSP 83 E A + + + A V + +Q L + +L + P Sbjct: 52 EETAGLALGEPAEPSGEPLAVELGPGLLGSVFDGVQRPLDALAAQQGDFLGRGARL---P 108 Query: 84 SQIR------RFNLRTGDTIS---GKIRPPKEGERYFAL------LKVNEVNFDKPENAR 128 + R ++R GD + E L ++ EV Sbjct: 109 ALDRARRWELEPSVRRGDDLVPGACLGVARSGAEAQPLLAPPHVRGRIAEVRSGALAVDE 168 Query: 129 NKILFENLTPL--------HANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 + + + +R RVLD P+ G ++ Sbjct: 169 PVVRLADGAEIALLQRWPVRRPRPIRRRLAPDVPFLTGQRVLDCFFPVSAGGTAMVPGGF 228 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK--------------GE 226 GKT+L Q++A+ A + V++ + ER E+ E+ + Sbjct: 229 GTGKTVLEQSLAKHAAAD----VVVYVGCGERGNEMAEVLDELPKLEDPRSGGPLLGRTV 284 Query: 227 VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT 286 +V +T + P + A+ + + V +++DS +R A A + ++ Sbjct: 285 LVVNTSNMPVAAREASIYTGCTIAEYFRDMGRSVALMIDSTSRWAEALREISARLEEMPG 344 Query: 287 -GGVDANALHRPKRFFGAARNVE----EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNM 341 G R RF+ A VE G++TI+ G + E + + Sbjct: 345 EEGYPTYLASRLARFYERAGRVETLGCGEGAVTIVGAV-SPPGGDLSEPVTQCSLRATGA 403 Query: 342 ELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM---WILR-KIIHPMGEIDAME 397 LS +A +R +PA+D+ S + + E L E + LR + + + + Sbjct: 404 LWALSADLAHRRHYPAVDWAISFSLEAERLRGWFEREAGEGFGALRDEAMKLLQRERELV 463 Query: 398 FLINKLAMTKTND 410 + + D Sbjct: 464 EVAELVGTESLQD 476 >UniRef50_C0QT22 V-type ATP synthase beta chain (V-type ATPase subunitB) n=1 Tax=Persephonella marina EX-H1 RepID=C0QT22_PERMH Length = 447 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 49/343 (14%), Positives = 109/343 (31%), Gaps = 17/343 (4%) Query: 77 DDIYVSPSQIRRFNLRTGDT-ISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFEN 135 +DI V + D + P K L ++ + P + I+ E Sbjct: 48 EDITVIEILGESSGINPQDVRVRFTGEPFKIPVSEGMLGRILDPFG-NPLDELGSIIPEA 106 Query: 136 LTPLHANSRLRMERGNGSTED-LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 194 + + +R +D + + +GQ+ + A L+ I + Sbjct: 107 FLDISGEAYNPSKRLYPEEIIYTGISSIDGLNTLVKGQKLPVFAVSGVPTDQLVAQIVRQ 166 Query: 195 IAYNHPDCVLMVLLIDERPEE-------VTEMQRLVKGEVVASTFDEPASRHVQVAEMVI 247 I + ++ + + E +T K V + DEP + + Sbjct: 167 IKTGSENRATVLCAVGVKYETANYLIEDITSGGNFPKTAVFLNLADEPPVNSLISVRSAL 226 Query: 248 EKAKRLV-EHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAAR 305 ++ L E DV++++ +T A + G++ G + A Sbjct: 227 TLSEFLAFEKGYDVVVVIYDMTNYCDALREISSKRGEIPGRKGYPGYMYSDLASIYERAG 286 Query: 306 NVEE-GGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSG 364 ++ GS+T I L + I + ++ L R + ++ V+P ++ S Sbjct: 287 VLKGMKGSVTQIP-VLTMPDDDITHPIPDLTGYITEGQIVLDRSLHQRGVYPPVNVLPSL 345 Query: 365 TRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTK 407 +R + + + +E L + + T+ Sbjct: 346 SRLMNRAVDDLHKRWANQI---YSAYAKAKRVEMLASIVGETE 385 >UniRef50_A5KSP4 Sodium-transporting two-sector ATPase n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSP4_9BACT Length = 495 Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 53/316 (16%), Positives = 110/316 (34%), Gaps = 29/316 (9%) Query: 92 RTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN 151 R G+ + G+I P +P + + + ++ PL + MER Sbjct: 105 RVGEGLIGRIVTPLC----------------RPLDDKGTVRLDDTRPLFYEAPSIMERTM 148 Query: 152 -GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLID 210 +D PI GQR I+ KAGK+ L + + +++ +LI Sbjct: 149 LSEQLPSGVTAVDALFPIVLGQRIAILGDTKAGKSTFLGQLGVNQI--DTGRIVVYVLIG 206 Query: 211 ERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIIL 263 +R E+ + + VV + + ++ + A+ L +DVI++ Sbjct: 207 KRRVEIDRLVATLNQTGAIKHSIVVVANIFDSIAQSYIAPYVGCAIAEHLWYGGRDVIVV 266 Query: 264 LDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGG-SLTIIATALI 321 D +T A+ Y + S + + A + G +LT + AL+ Sbjct: 267 YDDLTSHAKVYREISLLSEANPGRDSYPGDMFYAHSSLLERAGKLASSGKTLTALP-ALV 325 Query: 322 DTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMW 381 G + + + ++ + + PA++ S +R + T+ + + Sbjct: 326 TPGDDITAYLPTSIMSITDGQIIFDLATFRQNIRPAVNTGLSVSRVGGRVQTKRQKEIAG 385 Query: 382 ILRKIIHPMGEIDAME 397 L K + + Sbjct: 386 GLFKSLVAYRQAQEFS 401 >UniRef50_Q98QB7 ATP synthase subunit alpha 2 n=1 Tax=Mycoplasma pulmonis RepID=ATPA2_MYCPU Length = 513 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 99/258 (38%), Gaps = 10/258 (3%) Query: 148 ERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207 + +D+ PIG+GQR LI+ K GKT + + + N D ++ + Sbjct: 122 RVKLNEPLETGIFSIDILLPIGKGQRQLILGDSKTGKTSIALSTMINQKEN--DIKIIYV 179 Query: 208 LIDERPEEVTEMQRLVKGEVVAS------TFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I + ++ + + + + +A + + + + + + A+ +++ +DV+ Sbjct: 180 SIGLKSNDLKRIYKTIVEQKIAHKTILMHASSDNSFQQFLIPYVAMAHAENIMQSGEDVL 239 Query: 262 ILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATAL 320 I+ D +T A + +GK + + + + A + G S+T Sbjct: 240 IIFDDLTNHANVLREIALLTGKPVGKEAFPGDLFYSHSKLLERAGKFKNGYSITCFPIVR 299 Query: 321 IDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKM 380 + M ++ + ++ + +I ++ + PAID S +R + + + Sbjct: 300 T-INNDMTSLLASNIASITDGQIVTNSEIKDQGILPAIDIGLSVSRTGSSVQSVSLSKIA 358 Query: 381 WILRKIIHPMGEIDAMEF 398 + KI + + Sbjct: 359 IEISKIYSKYKQNEKFSD 376 >UniRef50_C4ZAP4 Flagellar protein export ATPase FliI n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZAP4_EUBR3 Length = 373 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 111/329 (33%), Gaps = 76/329 (23%) Query: 93 TGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG 152 TG ++ + G + +V + + ++ P+ A M R Sbjct: 88 TGHPLTVAVGDELLGHTVDGIGRVTDCDEKDL-------KLDSEYPIEAPPPDPMSREII 140 Query: 153 S-TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 211 S L + +D +G+GQR + + Sbjct: 141 SDVLPLGVKAVDGLITVGKGQR-----------------------------IGIFAGSGV 171 Query: 212 RPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLA 271 + A+ + +DV++++DS+TR + Sbjct: 172 GKSTL--------------------------------IAEYFRDKGEDVLLMMDSLTRFS 199 Query: 272 RAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEV 330 A + ASG+ T G + + A + GS+T + T L+D G +E Sbjct: 200 MAQREIGLASGEPPVTRGYPPSVYSEMPKLLERAGR-ADKGSITGLYTVLVD-GDDFNEP 257 Query: 331 IYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPM 390 I + + + + L RK+ K +PAID +S +R + T+E L+ ++ Sbjct: 258 ITDTARSILDGHIMLDRKLGHKNHYPAIDVLQSISRVMSAIATKEHKNLAGRLKNVLATY 317 Query: 391 GEIDAMEFLINKLAMTK-TNDDFFEMMKR 418 E + LIN A +N D +++ Sbjct: 318 TEAED---LINIGAYKNGSNQDIDYAIQK 343 >UniRef50_Q4A6P1 ATP synthase beta chain n=10 Tax=Mycoplasma RepID=Q4A6P1_MYCS5 Length = 470 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 56/331 (16%), Positives = 123/331 (37%), Gaps = 20/331 (6%) Query: 91 LRTGDTISGKIRPPKEGERYFALLKVNEVNFD---KPENARNKILFENLTPLHANSRLRM 147 L G + + + + +VN + PE ++ ++ + N Sbjct: 60 LYVGQDLQNTKKSFMVPVGEESKNHIFDVNGNSLTNPEAKLKRVEMDSTIYPNNNF---- 115 Query: 148 ERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207 + + +D P+ G + + GKT+L++ + +++ + + Sbjct: 116 -TTKPQILETGIKAIDFFIPVLSGAKIGLFGGAGVGKTVLMKEVIFTLSKKDKKTTSIFI 174 Query: 208 LIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE-HKKD 259 ER E E+ + + S +E A + + + + A+ L + K++ Sbjct: 175 GAGERSREAIELYDELKFSNLMKNSIIFVSRMNELAGSRMSIVPIGVTAAEYLRDTQKEN 234 Query: 260 VIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIAT 318 V++ +D+I R +A N + + K + GG A E G++T T Sbjct: 235 VLLFIDNIFRFLQAGNEMSASLDKKPSLGGYQATLNTDISYVENRIFTNEN-GTITSFQT 293 Query: 319 ALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGT-RKEELLTTQEEL 377 + + + N L LSR+I K +FPAID S + +E + +E Sbjct: 294 VFLPM-DDLSDPSAVAIFKHLNGSLVLSREITAKNIFPAIDPLASSSDSVDERIIGKEHY 352 Query: 378 QKMWILRKIIHPMGEIDAMEFLINKLAMTKT 408 + +KI+ E++ + ++ + + Sbjct: 353 NAIVEAKKILQRYKELEDVILILGIDELDEE 383 >UniRef50_A5IY82 ATP synthase alpha chain n=23 Tax=Mycoplasmataceae RepID=A5IY82_MYCAP Length = 524 Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 97/266 (36%), Gaps = 13/266 (4%) Query: 152 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 211 +DL PIG+GQR LI+ + GKT + N + A + + I + Sbjct: 141 NEQLYTGINAIDLLIPIGKGQRELIIGDRQTGKTHIALNAIINQAA--KGTKCIYVAIGQ 198 Query: 212 RPEEVTEMQ-------RLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILL 264 + E ++ + L ++ + + A + + A+ + D +++ Sbjct: 199 KRESISRIYNTLNQHNALKNTIIIDAPAN-SAYEQYLAPYVGMAHAENISAT-DDALVIF 256 Query: 265 DSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDT 323 D +T+ A + + S K + + + + A + + ++T + Sbjct: 257 DDLTKHANIFREIALLSNKPVGKEAMPGDMFFAHSQLLERAGSYKGKKTITALPIIQT-V 315 Query: 324 GSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWIL 383 + +I + ++ S K+ K + PAID + S +R + + + ++ Sbjct: 316 DGDITSLIASNVISITDGQIVTSAKLFAKGILPAIDIDFSVSRTGSSVQDRTIAKVAGVI 375 Query: 384 RKIIHPMGEIDAMEFLINKLAMTKTN 409 KI + L +L +N Sbjct: 376 NKIYRKYKRHLKLSMLDYELNKEVSN 401 >UniRef50_Q98QX4 ATP SYNTHASE BETA CHAIN n=1 Tax=Mycoplasma pulmonis RepID=Q98QX4_MYCPU Length = 698 Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 71/409 (17%), Positives = 144/409 (35%), Gaps = 27/409 (6%) Query: 10 PVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEIL-QDGFGFLRSA 68 P+ L + E + K ++ I K I + EI + G L Sbjct: 199 PLKPLEDKAYVL--EGIVVEVKSQ-VYKIKLTLVKEKPIINA--LFEIQTEQGQTRLLEI 253 Query: 69 DSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENAR 128 YV R + G K P L ++ + ++ Sbjct: 254 SDILSDSLVAGYV---LGREQGIEIGSFARSKNNPYSIPISEKLLGRIIDPVGRILDDPT 310 Query: 129 NKILFENLTPLHANSRLRMER----GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGK 184 + ++ + P+ + E+ + +V+D+ PI G + ++ GK Sbjct: 311 HPLVGKQYAPMIETESKQTEKYKVFPKTQILETGIKVIDVLLPIPSGGKTGLLGGAGVGK 370 Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERP-------EEVTEMQRLVKGEVVASTFDEPAS 237 T+++Q + + H D V + I ER EE E+ L K + +E Sbjct: 371 TVVVQELI-NTFIKHHDGVSVFSGIGERIREGHELWEEAKELGFLDKTTFIFGQMNESPG 429 Query: 238 RHVQVAEMVIEKAKRLVEH-KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALH 295 ++ ++ A+ + K+V++ +D+I R +A + V K + G + Sbjct: 430 LRLRSGFTGVKVAEYFRNNLGKNVLLFMDNIFRYMQAGSEVSSLLEKTPSAVGYQPMLVS 489 Query: 296 RPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVF 355 + N G +T I I + + + LSR++A + ++ Sbjct: 490 EIGKLQERI-NSNNDGDITSIQAMYIPA-DDFTDPAAVAAFAHFDATIILSRQLAAEGLY 547 Query: 356 PAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 PA+D S ++ T + + I ++ I + + ++E +IN L Sbjct: 548 PAVDPLVSSSKLLSTKFTST--RHINIAKETIAILEKSKSLEDIINILG 594 >UniRef50_Q874G5 Vacuolar membrane ATPase subunit a (Fragment) n=7 Tax=Saccharomycetaceae RepID=Q874G5_SACCA Length = 1101 Score = 207 bits (526), Expect = 8e-52, Method: Composition-based stats. Identities = 74/382 (19%), Positives = 139/382 (36%), Gaps = 57/382 (14%) Query: 60 DGFGFLRSADSSYLAGPDDIY--VSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVN 117 D G+++SAD+ + A IY VS IR L I + KE V+ Sbjct: 654 DSDGYVKSADNRFSATVTTIYKGVSEGLIR---LARSLGIRVSVSTEKEH--------VD 702 Query: 118 EVNFDKPENARNKILFENLTPLHANSRL-RMERGNGSTEDLTARVLDLASPIG-RGQRG- 174 + N R +F + L R ++R + ++ T + + + Q Sbjct: 703 KNNVKHKSCYR---VFLSGEALIGVLRFCALDRKRTAFKEFTREAVPFYFTLQEKDQDEY 759 Query: 175 -LIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR------------ 221 I P + K LL ++A +V ER E+ E+ Sbjct: 760 YGITLPDETDKQYLLSSLA------------LVHNCGERGNEMAEVLMEFPELFTEKDGR 807 Query: 222 ----LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTV 277 + + +VA+T + P + I A+ + KDV ++ DS +R A A + Sbjct: 808 KEPIMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDQGKDVSMIADSSSRWAEALREI 867 Query: 278 VPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGS-----LTIIATALIDTGSKMDEVI 331 G++ G A + F+ A GS I A+ G + + Sbjct: 868 SGRLGEMPADQGFPAYLGAKLASFYERAGKAVALGSPDRIGSVSIVAAVSPAGGDFSDPV 927 Query: 332 YEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL--TTQEELQKMWILR-KIIH 388 G + L +K+A+++ FP+I+ + S ++ L + +LR +I Sbjct: 928 TTATLGITQVFWGLDKKLAQRKHFPSINTSVSYSKYTNALNKYYDSNYAEFPVLRDRIKE 987 Query: 389 PMGEIDAMEFLINKLAMTKTND 410 + + +E ++ + + +D Sbjct: 988 ILSNAEELEQVVQLVGKSALSD 1009 Score = 84.8 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 38/256 (14%), Positives = 78/256 (30%), Gaps = 60/256 (23%) Query: 11 VSELITLGENMGLENLARMRKQDIIFAILKQHA------------KSGEDIFGDGVLEIL 58 + EL+ +G + + + R+ + ++ A K G G++E + Sbjct: 28 MYELVKVGHDNLVGEVIRIDGDKATIQVYEETAGVTVGDPVLRTGKPLSVELGPGLMETI 87 Query: 59 QDGFGFLRSADSSYLAGPDDIYVS-----PSQIRRF-------NLRTGDTI--------- 97 DG ++ + IY+ P+ R+ GD I Sbjct: 88 YDG---IQRPLKAIKDMSQSIYIPRGIDAPALDRKITWNFTPGKYTVGDHISGGDIFGSI 144 Query: 98 -----------------SGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLH 140 G I Y K+ EV + + ++ + P+ Sbjct: 145 FENSLLSDHKILLPPRARGTITWIAPAGEYTVDEKILEV---EFDGVKSDYSMYHTWPVR 201 Query: 141 ANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200 + + RVLD P +G I GKT++ Q++++ + Sbjct: 202 VPRPVAEKLSADYPLLTGQRVLDALFPCVQGGTTCIPGAFGCGKTVISQSLSKYSNSDS- 260 Query: 201 DCVLMVLLIDERPEEV 216 ++ + + EV Sbjct: 261 ---IIYVGCFAKGTEV 273 >UniRef50_Q98QB6 ATP synthase subunit beta 2 n=22 Tax=Mycoplasmataceae RepID=ATPB2_MYCPU Length = 468 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 52/281 (18%), Positives = 116/281 (41%), Gaps = 14/281 (4%) Query: 150 GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI--AYNHPDCVLMVL 207 + + +++D PI +G + I GKT++++ + +I + D + + Sbjct: 117 SDNEIINTGIKIIDFFVPIIKGSKIGIFGGAGVGKTIIIKELIFNISRQRDSNDVKVFFV 176 Query: 208 LIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVE-HKKD 259 ER E E+ + + S +EP+ +++ + I A+ + +KD Sbjct: 177 GTGERTREAKELYDELVNSSLIKSTSLFISQMNEPSGSRMKILPVGITAAEYARDSEQKD 236 Query: 260 VIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIAT 318 V+ +D+I R +A + + GK + G A + N + GS+T T Sbjct: 237 VLFFVDNIYRYLQAGRELSFSLGKKPSEAGYQATLVSDISSVQERLANSKH-GSITSFQT 295 Query: 319 ALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRS-GTRKEELLTTQEEL 377 + +++ + L LSR+I + +FPAID S + +E + + + Sbjct: 296 VFLPM-DDLNDPASVAILNHLDSSLVLSREIFAEGLFPAIDPLLSNSSLLQEKIVGKRHI 354 Query: 378 QKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 + ++KI+H +++ M ++ + N + ++ Sbjct: 355 LLVKRVKKILHKYKQLEEMIMILGVQELEPNNRLIVKKAQQ 395 >UniRef50_D1J8A0 ATP synthase beta chain n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8A0_MYCHP Length = 452 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 108/299 (36%), Gaps = 14/299 (4%) Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 +NKI + + N R + + +D PI +G + + Sbjct: 89 GQPLLETKNKIEYVEMNSTINNERYLENNK--EIIETGIKAIDFFMPIVKGAKIGLFGGA 146 Query: 181 KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR-------LVKGEVVASTFD 233 GKT+L++ I ++ H + + ER E E+ + + S + Sbjct: 147 GVGKTVLMKEIIFNLNKQHEANSNIFIGSGERSREGIELYNELSSSNLMKDSIMFISKMN 206 Query: 234 EPASRHVQVAEMVIEKAKRLVEH-KKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDA 291 E + + I A+ L + ++V++ +D+I R +A N V A GK + GG + Sbjct: 207 EAPGARTSIVPIGITAAEYLRDTCNENVLLFIDNIYRFIQAENEVSSALGKKPSIGGYQS 266 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 + GS+T T + + + + L LSR A Sbjct: 267 TLESDVTEVESRLFR-NKKGSITSFQTIFLPM-DDLSDPSAVAVFNHLDGNLVLSRSQAA 324 Query: 352 KRVFPAIDYNRSGTR-KEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTN 409 K +FPA D S T + + + ++I+ +++ + ++ + + + Sbjct: 325 KNIFPAFDPLASSTNAINPTIIGKRHYDAIIEAKRILKAYKDLEDVILILGFDELDEES 383 >UniRef50_B8JE34 V-type ATP synthase beta chain n=5 Tax=Deltaproteobacteria RepID=VATB_ANAD2 Length = 477 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 56/346 (16%), Positives = 107/346 (30%), Gaps = 24/346 (6%) Query: 92 RTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGN 151 R T++G++ + G L +V + P + + E +H + R Sbjct: 76 RAEVTLTGQV--ARLGVSRGMLGRVLDGLGR-PADGLPPPVPEARPAIHGAALNVTRREK 132 Query: 152 GSTE-DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNI-AQSIAYNHPDCVLMVLLI 209 S + +D + + RGQ+ + + + L I Q+ ++ + Sbjct: 133 PSDFIETGVSAIDGMNTLVRGQKLPVFSCAGLPASRLAAQIVCQARVRGGEAFAVVFAAM 192 Query: 210 DERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV-EHKKDVI 261 E L + V + ++P + + A+ L H V+ Sbjct: 193 GSPFREYHAFLEAFRAAGVLARTVVFLNRAEDPPIERLMTPRCALTCAEHLAFVHGLHVL 252 Query: 262 ILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEG-GSLTIIATA 319 ++L +T A V A +V G F A V GSLT + Sbjct: 253 VVLTDVTSYCEALREVALAREEVPGRRGYPGYMYTDLATIFERAGRVRGRPGSLTQLP-V 311 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQ----- 374 L + I + ++ LSR + + V+P ID S +R L Sbjct: 312 LTMPDDDLTHPIPDLTGYITEGQIVLSRDLDRRGVYPPIDVLPSLSRLMGLGAGPGKTRD 371 Query: 375 EELQKMWILRKIIHPMGEIDAMEFLIN---KLAMTKTNDDFFEMMK 417 + L ++ M ++ K F + + Sbjct: 372 DHRPVADQLYAFYARGRDVRRMAAIVGAASLGEEEKRLLAFADAFE 417 >UniRef50_A8BYU1 Vacuolar ATP synthase catalytic subunit A n=3 Tax=Giardia intestinalis RepID=A8BYU1_GIALA Length = 655 Score = 204 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 54/361 (14%), Positives = 117/361 (32%), Gaps = 72/361 (19%) Query: 117 NEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLI 176 ++ + R + P+ + ++ + + R LD P+ G I Sbjct: 194 EKILVLEYAGQRYYYGLAHYHPVRSPKKVFKKLPCINPLITGQRTLDGLFPLAIGATAAI 253 Query: 177 VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEE----VTEMQRLV--------- 223 GKT++ Q+I++ + V++ + ER E +T+ + Sbjct: 254 PGGFGCGKTVVSQSISKYGNTD----VIVYIGCGERGNEMAEILTDFPEMTFEAKKRVIG 309 Query: 224 ----------------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 267 + +VA+T + P + I ++ + +V +L DS Sbjct: 310 PSGQQEIKTVVSDIFSRTVLVANTSNMPVAAREASIYTGITISEFFRDQGYNVTLLADST 369 Query: 268 TRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNV------------------- 307 +R A A + G + GG A+ + F+ A V Sbjct: 370 SRWAEALREISGRLGGIPGEGGYPADLTSKLSHFYERAGRVICLGNSNGAWSPENILDPT 429 Query: 308 ---------------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEK 352 + GS+++I + + + + LS+ +A++ Sbjct: 430 SGAISSTEQGLLQPGQRIGSVSVIGAV-SPAAGDLSDAVAVSTLAIVQVFWGLSKNLAKR 488 Query: 353 RVFPAIDYNRSGTRKEELLTTQEELQKMWILR---KIIHPMGEIDAMEFLINKLAMTKTN 409 + FP++D+ S +R E L + + L K + A++ + + Sbjct: 489 KHFPSVDWLISYSRCTETLAPWYNARDISFLTNKEKAKTLLQNEVAIQETAQLVGYDSLD 548 Query: 410 D 410 D Sbjct: 549 D 549 >UniRef50_UPI0001B4F835 V-type ATP synthase subunit B n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B4F835 Length = 469 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 45/330 (13%), Positives = 107/330 (32%), Gaps = 18/330 (5%) Query: 102 RPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG-STEDLTAR 160 P + L +V D P + + + + + R Sbjct: 79 GPLRVPVGTDWLGRVCNGRGD-PLDGGPPVFGSHHAEVGGAPVNPVRREPPSEPVLTGVG 137 Query: 161 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM- 219 +D + + RGQ+ + + L IA + ++ + + + Sbjct: 138 AVDTLTTLARGQKLPVFSTAGLPHLELAAQIAAQSTTSGAAFSVVFAGMGLTHADAAFVR 197 Query: 220 ----QRLVKGEVVA--STFDEPASRHVQVAEMVIEKAKRLVEHK-KDVIILLDSITRLAR 272 +R GE+V +T D+P + + + A+ L + V++++ +T A Sbjct: 198 DALEERSAAGELVLLLNTADDPVIERILTPRIALTVAEHLAFTGGRHVLVVMSDMTMYAE 257 Query: 273 AYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEG-GSLTIIATALIDTGSKMDEV 330 A V A G++ + + GS+T++ L + Sbjct: 258 ALREVSAARGEIPARRAYPGYLYSDLASLYERCGRIRGRPGSVTVLP-VLTMPAGDITHP 316 Query: 331 IYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQ-----EELQKMWILRK 385 + + ++ LS + + V+P +D S +R + L L Sbjct: 317 VPDLTGYITEGQIVLSPETHARGVYPPLDALSSLSRLMRKGAGPGRTREDHLDVAAQLLA 376 Query: 386 IIHPMGEIDAMEFLINKLAMTKTNDDFFEM 415 + ++ + L+ + A++ T+ + + Sbjct: 377 AVARARQVRDLADLVGRAALSPTDRRYLDF 406 >UniRef50_A6LA83 V-type ATPase, subunit A n=41 Tax=Bacteria RepID=A6LA83_PARD8 Length = 585 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 52/299 (17%), Positives = 107/299 (35%), Gaps = 34/299 (11%) Query: 135 NLTPLHANSRLRMERGNG-STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 193 P+ E+ + R +D +PI G G I P GKT+L I++ Sbjct: 191 QKWPVKKAITCYKEKPRPFKLLETGVRTIDTVNPIVEGGTGFIPGPFGTGKTVLQHAISK 250 Query: 194 SIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVASTFDEPASRH 239 + ++++ ER EV E+ + + ++A+T + P + Sbjct: 251 QAEAD----IVIIAACGERANEVVEVFTEFPELVDPHTGRKLMERTIIIANTSNMPVAAR 306 Query: 240 VQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPK 298 + A+ V+++ DS +R A+A + ++ + Sbjct: 307 EASVYTAMTIAEYYRSMGLKVLLMADSTSRWAQALREMSNRLEELPGPDAFPMDLSAIVA 366 Query: 299 RFFGAAR----NVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRV 354 F+ A N GS+T I T G + E + E K L ++ A+++ Sbjct: 367 NFYARAGFVHLNNNATGSVTFIGTV-SPAGGNLKEPVTENTKKVARCFYALEQERADRKR 425 Query: 355 FPAIDYNRSGTRKEE---------LLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLA 404 +PA++ S ++ E + E ++K+ ++ + EI ++ Sbjct: 426 YPAVNPIESYSKYIEYPEFQEYIAKHISPEWIEKVNEIKTRMLRGKEISEQINILGDDG 484 >UniRef50_C4N426 ATP synthase F1 alpha subunit n=1 Tax=uncultured bacterium pSY1435 RepID=C4N426_9BACT Length = 507 Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 68/382 (17%), Positives = 118/382 (30%), Gaps = 15/382 (3%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSP 83 ENL + I +I + + G+ + + S +++ D V Sbjct: 14 ENLGELHPHVRIDSIGRIVSVGDGVAVAVGLERPVLGELLIIGSDIAAHAEEVDSERVRL 73 Query: 84 SQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANS 143 + +R GD + L +V + + N + Sbjct: 74 VLLAPGAVRAGDPVRRAGHVLHVPAGPGLLGRVVDPLGRPLDRKGNVATRRTIRIERPPV 133 Query: 144 RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 203 L LD PIGRGQR L++ GKT L + ++ P + Sbjct: 134 PLIDRDVVSRPLRTGIFTLDTMIPIGRGQRQLLLGDRSTGKTELGIELLAAL---DPTTI 190 Query: 204 LMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH 256 + + I R E L G V S D+P A+ LVE Sbjct: 191 GVYVAIGRRGSETASTLAQLRARGVLEHGFAVVSDADDPVGLVHLTPYAASAMAESLVEA 250 Query: 257 KKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV---EEGGS 312 DV+++ D +T A A+ ++ + + + + R + GGS Sbjct: 251 GHDVVVVYDDLTNHAHAHRSLALLLDRPVGREAHPVDVFYAHARLLEQGAQLCARRGGGS 310 Query: 313 LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLT 372 LT I G + I + ++ L +A PAID + S +R Sbjct: 311 LTAIPIIETQAG-DLAGYIPTNLVSITDGQIRLDAALAAAGQHPAIDVSLSVSRVGGRAQ 369 Query: 373 TQEELQKMWILRKIIHPMGEID 394 + + E++ Sbjct: 370 PELIRALAGSFKNRYAQFLELE 391 >UniRef50_B7QDF5 Vacuolar H+-ATPase V1 sector, subunit B, putative n=1 Tax=Ixodes scapularis RepID=B7QDF5_IXOSC Length = 480 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 49/351 (13%), Positives = 117/351 (33%), Gaps = 52/351 (14%) Query: 93 TGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG 152 TGD + + G + K ++ P A + + + P++ +R+ E Sbjct: 98 TGDILRIPVSEDMLGRVFNGSGK--PIDKGPPVLAEDFLDIQ-GQPINPWARIYPE---- 150 Query: 153 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS-----------IAYNHPD 201 +D+ + I RGQ+ I + + I + + + + Sbjct: 151 EMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQGGLVKLPGKSVLDTSDDN 210 Query: 202 CVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV 254 ++ + E + + + ++P + + + A+ L Sbjct: 211 FAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIERIITPRLALTTAEFLA 270 Query: 255 EH-KKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRFFGAARNVEE-GGS 312 +K V+++L ++ A A V A A VE GS Sbjct: 271 YQCEKHVLVILTDMSSYAEALREVSAARE-------------------ERAGRVEGRNGS 311 Query: 313 LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLT 372 +T I L + I + ++++ R++ ++V+P I+ S +R + Sbjct: 312 ITQIP-ILTMPNDDITHPIPDLTGYITEGQVYVDRQLHNRQVYPPINVLPSLSRLMKSAI 370 Query: 373 T-----QEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 ++ L ++ AM+ ++ + A++ + F E + + Sbjct: 371 GEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALSPEDLLFLEFLGK 421 >UniRef50_C4DDR1 Archaeal/vacuolar-type H+-ATPase subunit B n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DDR1_9ACTO Length = 466 Score = 198 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 48/327 (14%), Positives = 103/327 (31%), Gaps = 24/327 (7%) Query: 93 TGDTISGKIRPPKEGERYFA---LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 TG +G + G + + V+ P ++ +P++ R+ Sbjct: 72 TGVEFTGSVFRVVVGSGWLGRVCNGRGVPVDGGPPILGSERLPV-AGSPINPTRRMP--- 127 Query: 150 GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLI 209 V+D + + RGQ+ + + P L IA ++ + Sbjct: 128 -PSEPVHTGVSVVDGLTTLVRGQKLPVFSIPGLPHLELATQIAAQAHTGGEPFCVVFAGM 186 Query: 210 DERPEE-------VTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLV-EHKKDVI 261 + + E + ++ +T DEP V + + A+ L + V+ Sbjct: 187 GLSHADAAAARDVLAERAAAGELVLLLNTADEPVIERVVTPRVALTIAENLAFGQGRHVL 246 Query: 262 ILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVEEG-GSLTIIATA 319 ++L +T A A V A + G + + + GS+TI+ Sbjct: 247 VVLTDMTSYAEALREVATARHDIPARRGYPGYLYSDLASLYERCGRLRDRPGSVTIVP-V 305 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQ----- 374 L + + + ++ LS + V+P +D S +R Sbjct: 306 LTMPAGDLTHPVPDLTGYITEGQVVLSARAHGSGVYPPVDPLASLSRLMRHGAGPGRTRD 365 Query: 375 EELQKMWILRKIIHPMGEIDAMEFLIN 401 + L + + +I + L+ Sbjct: 366 DHLDVAAQVLAALARARQIRELSELVG 392 >UniRef50_C0QV76 V-type ATP synthase subunit A n=3 Tax=Bacteria RepID=C0QV76_BRAHW Length = 587 Score = 198 bits (502), Expect = 5e-49, Method: Composition-based stats. Identities = 60/336 (17%), Positives = 116/336 (34%), Gaps = 42/336 (12%) Query: 98 SGKIRPPKEGERYF---ALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNG-S 153 G + Y L + N +K + P+ + E+ Sbjct: 156 KGVVESVASAGTYHLQDTLAVIKSANGEKVN-----VTMIQTWPVKLTIKAYKEKPRPFK 210 Query: 154 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERP 213 + R +D +PI G G I P AGKT+L +A + + ++++ ER Sbjct: 211 LLETGVRTIDTFNPITEGGTGFIPGPFGAGKTVLQHALATNANAD----LIIMTACGERA 266 Query: 214 EEVTEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKD 259 EV E+ + + ++ +T + P + + + A+ Sbjct: 267 NEVVEIFTEFPELIDPRTGRSLMERTTIICNTSNMPVAAREASVYVGMTIAEYYRSMGLK 326 Query: 260 VIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAAR----NVEEGGSLT 314 V++L DS +R A+A + ++ + F+ A N E GS+T Sbjct: 327 VLLLADSTSRWAQALREMSNRLEELPGPDAFPIDLPAIISSFYARAGFVYLNNGETGSIT 386 Query: 315 IIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEE----- 369 I T G + E + E + LS+K A+ + +PA+D S ++ E Sbjct: 387 FIGTV-SPAGGNLKEPVTESTRKAARCFYALSQKRADSKRYPAVDPLDSYSKYIEYPEFI 445 Query: 370 ----LLTTQEELQKMWILRKIIHPMGEIDAMEFLIN 401 + + K+ + I E + ++ Sbjct: 446 EFSDINIEKGWADKVTKAKDIARRGQEANDQISILG 481 >UniRef50_B9L759 V-type ATP synthase beta chain n=1 Tax=Nautilia profundicola AmH RepID=B9L759_NAUPA Length = 442 Score = 197 bits (500), Expect = 9e-49, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 107/322 (33%), Gaps = 12/322 (3%) Query: 102 RPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARV 161 +P K + K + + + + E+ L A + E Sbjct: 74 KPLKINLSENMVGKTLDAFANPIDGIMESVEKESDINLGAYNPAYREYPKN-IIVTGFSA 132 Query: 162 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR 221 +D + + +GQ+ I A + +A I+ + ++++ I R E + Sbjct: 133 IDALNTLVKGQKLPIFALSGLKNDEFVAKLATQISIKNS--LIILAAIGMRFERAQYLIN 190 Query: 222 LVKG-----EVVASTFDEPASRHVQVAEMVIEKAKRLV-EHKKDVIILLDSITRLARAYN 275 + V + +EP + + + A+ + E K+VI++L +T A A Sbjct: 191 SISNKSSQITVFLNLANEPTINSLLLPRTALTFAEYMAFEKGKNVIVILYDMTNYANALR 250 Query: 276 TVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEG-GSLTIIATALIDTGSKMDEVIYE 333 + ++ G + A ++ GS+T I L + I + Sbjct: 251 EISSKKEEIPGKKGYPGYMYSDLASIYERAGIIKGKKGSITQIP-VLTLPDDDITHPIAD 309 Query: 334 EFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEI 393 ++ SR + +K +FP ID S +R + L +I Sbjct: 310 LSGYITEGQIVFSRSLHKKGIFPPIDVLSSLSRLMNSAIDSTHKRFASQLYASYANAKKI 369 Query: 394 DAMEFLINKLAMTKTNDDFFEM 415 + +I + +++ + Sbjct: 370 ENFASIIGEGELSELEKQYLSF 391 >UniRef50_O50140 ATP synthase subunit alpha n=4 Tax=cellular organisms RepID=O50140_RUMAL Length = 523 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 56/385 (14%), Positives = 125/385 (32%), Gaps = 52/385 (13%) Query: 55 LEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALL 114 + + QD G + + ++ + + ++ G+ + G++ Sbjct: 64 MNLEQDFVGCVLLGTEEGIREGSNVKRTGRIV---SVPVGEAMLGRVVNAL--------- 111 Query: 115 KVNEVNFDKPENARNKILFENLTPLHANSRLRMERG-NGSTEDLTARVLDLASPIGRGQR 173 P + + IL P+ + + + R + +D P+GRGQR Sbjct: 112 -------GAPIDGKGAILTNETRPVESPAFGIITRKSVNRPLQTGIKAIDSMIPVGRGQR 164 Query: 174 GLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ-------RLVKGE 226 LI+ + GKT + + + + + + + I ++ V + + Sbjct: 165 ELIIGDRQTGKTTIALDTIINQKGKN--VICIYVAIGQKISTVANIVDTLTKNDAMDYSI 222 Query: 227 VVASTFDEPASRHVQVAEM-VIEKAKRLVEHKKDVIILLD----SITRLARAYNTVV--- 278 VV++T E A V+ A+ + + + ++ D S T +A + Sbjct: 223 VVSATASEMAPLQYIAPYASVLLMAEYFMYTRANDVLCADTDDLSSTLYRQAVQIAICTL 282 Query: 279 PASGKVLTGGVDANAL---HRPKRFFGAAR-------NVEEGGSLTIIAT--ALIDTGSK 326 T G+ A+ + R G R + GGS+T + + + Sbjct: 283 LLKRPTGTCGIMIPAIGDVYLHSRLSGRERDYDHRYMKINGGGSITALPSHRNIRQVNKV 342 Query: 327 MDEVIYEEFKGTGNMELHL--SRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILR 384 I + + +R + V PA++ S +R + + L+ Sbjct: 343 YKAYIPTNVISITDGHRYFLGNRAVLSSGVRPAVNPGISVSRVGGSAQIKAMKKVSGPLK 402 Query: 385 KIIHPMGEIDAMEFL-INKLAMTKT 408 + E+ + + TK Sbjct: 403 LLYSQYRELQSFSQFGSDLDQDTKD 427 >UniRef50_Q600H8 ATP synthase alpha chain n=4 Tax=Mycoplasma RepID=Q600H8_MYCH2 Length = 512 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 48/314 (15%), Positives = 105/314 (33%), Gaps = 14/314 (4%) Query: 110 YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED-LTARVLDLASPI 168 YF + N +P AR + + + R + +DL +PI Sbjct: 79 YFGKIIDLSGNIIEPRAARPTTFLQYRHSAFETAAGVLRRELIDRQIYTGIYAIDLFNPI 138 Query: 169 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQ------RL 222 G GQR LIV + GKT + N + + + + I ++ + + + Sbjct: 139 GFGQRELIVGDRQTGKTHIGINTIINQK-DSRTTKCIYVSIGQKRQNLVSLYHDLVQNEA 197 Query: 223 VKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASG 282 + +V + A+ L + DV+I+ D +T+ A + V + Sbjct: 198 MANTIVLHAPSTSPFDQYLAPYFAMAHAENLSYN-YDVLIVFDDLTKHASVWREVALLTN 256 Query: 283 KVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNM 341 + + A+ + + S+T + L + + ++ + Sbjct: 257 QPIGKEAFPADIFFAHSKLLERSGKFIGRKSITALP-ILQTVDNDITALVSSNVISITDG 315 Query: 342 ELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMG---EIDAMEF 398 ++ S + + PAI+ S +R + Q + + + ++ +E Sbjct: 316 QIITSSALFAQGKIPAINIGLSVSRTGSSVQAQNIRLISKEISSLYYNYQKQIKLAKLEK 375 Query: 399 LINKLAMTKTNDDF 412 L L ++ F Sbjct: 376 LDYDLNKETSDLLF 389 >UniRef50_Q8FXF0 Flagellum-specific ATP synthase FliI n=3 Tax=Brucella RepID=Q8FXF0_BRUSU Length = 422 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 61/345 (17%), Positives = 117/345 (33%), Gaps = 54/345 (15%) Query: 85 QIRRFNLRT----GDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLH 140 ++ F+ R G + + P + +V + + L Sbjct: 77 LVKPFDDRIMPSLGAAVFEE-GPLRIRPAPEWRGRVINALGNAIDGKGALKLGTRPMAAE 135 Query: 141 ANSRLRMERGNGST-EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNH 199 + + + R V+D+ +P+ GQR I A GK+ LL + ++ ++ Sbjct: 136 SLAPAALRRARVDRGLRTGVNVIDIFTPLCFGQRIGIFAGSGVGKSTLLAMMTRAADFDT 195 Query: 200 PDCVLMVLLIDERPEEVTEMQRLVK------GEVVASTFDEPASRHVQVAEMVIEKAKRL 253 +++ L ER EV EM V +T DE A+ Sbjct: 196 ----VVLALTGERGREVREMLEETMAGHLGKTITVVATGDESPMMRRLAPNTATAIAEYF 251 Query: 254 VEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAA--RNVEEG 310 + ++V++++DS+TR A A V A+ + G + + R A + E G Sbjct: 252 RDLGQNVLLIVDSVTRFAHAAREVAIAAEEPPVARGYPPSVFSQLPRLLERAGPGSAEAG 311 Query: 311 GSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEEL 370 GS+ I + L+D G ++ S +R + Sbjct: 312 GSIAGIYSVLVD-GDDHNDP-------------------------------ASVSRLAKH 339 Query: 371 LTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEM 415 T E+ + + LR ++ E + + A K +D + Sbjct: 340 NWTPEQRKLVMQLRSMVARFEETRDLRAI---GAYQKGHDGLLDQ 381 >UniRef50_D1J8A1 ATP synthase alpha chain n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8A1_MYCHP Length = 512 Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 49/310 (15%), Positives = 108/310 (34%), Gaps = 20/310 (6%) Query: 113 LLKVNEVNFDK--PENARNKIL---FENLTPLHANSRLRMERGN-GSTEDLTARVLDLAS 166 L K+ ++N P + + + N P+ + M +DL Sbjct: 85 LGKIIDINGGIIWPTDEKKRPNNSMLSNHHPIFGLAHNLMTVKTLNEQLYTGIIAIDLLI 144 Query: 167 PIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV--- 223 PIG+GQR LI+ + GKT + N + A N + + I ++ E +T + + Sbjct: 145 PIGKGQRELIIGDRQTGKTHMALNAIINQAKN--GTKCIYVAIGQKRESLTNIYETLKKY 202 Query: 224 ----KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVP 279 ++ + + + + A+ L DV+I+ D +T+ A + Sbjct: 203 DALKNTMIIDAPQN--VYEQYLAPYIGMAHAENLSYDN-DVLIVFDDLTKHANIIREIAL 259 Query: 280 ASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGT 338 + K + + ++ A + ++T + L + +I Sbjct: 260 LTNKSVGKEAMPSDIFFAHSSLLERAGSFVNRKTITALP-ILQTVDGDITSLISSNIISI 318 Query: 339 GNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEF 398 + ++ S + PAI+ + S +R + ++ + + KI + Sbjct: 319 TDGQIVTSSDLFASGKLPAINIDLSVSRTGSSVQSRMMTKIAGEINKIFRSYKRHLKLAM 378 Query: 399 LINKLAMTKT 408 L +L + Sbjct: 379 LDYELNKETS 388 >UniRef50_C3W009 ATP synthase subunit alpha n=4 Tax=Spermatophyta RepID=C3W009_PINAT Length = 507 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 72/222 (32%), Gaps = 12/222 (5%) Query: 195 IAYNHPDCVLMVLLIDERPE-------EVTEMQRLVKGEVVASTFDEPASRHVQVAEMVI 247 + + + + + I +R E + VVA T D PA+ Sbjct: 185 LNQKSQNVICVYVAIGQRASSVAQVVNTFRERGAMAYTIVVAETADSPATLQYLAPYTGA 244 Query: 248 EKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARN 306 A+ + K+ I+ D +++ A+AY + + + + R A Sbjct: 245 TLAEYFMYKKQHTSIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK 304 Query: 307 VE---EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRS 363 + GS+T + G + I + ++ S + + PAI+ S Sbjct: 305 LSSQLGEGSVTALPIVETQAG-DVSAYIPTNVISITDGQIFSSADLFNAGIRPAINVGIS 363 Query: 364 GTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 +R + + L+ + E++A + L Sbjct: 364 VSRVGSAAQIKAMKKVAGKLKLELAQFAELEAFAQFASDLDK 405 >UniRef50_A0E2E9 Chromosome undetermined scaffold_75, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0E2E9_PARTE Length = 610 Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats. Identities = 62/393 (15%), Positives = 136/393 (34%), Gaps = 35/393 (8%) Query: 44 KSGEDIFGDGVLEILQDGFGFLRS--ADSSYLAG----PDDIYVS---PSQIRRFNLRTG 94 + G +G G + I + S++ G DIY S + + Sbjct: 111 QDGSFFYGQGQMNISALDHDRIWEFKPSSNFKEGKLIYGGDIYGSVFENNLFDEHKIMVN 170 Query: 95 DTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGST 154 + G++ Y + EV + E NK + P+ + + + Sbjct: 171 PLVQGRVTYIAPEGNYTLKDNILEV---EIEGIINKYGMSHFWPVRQKRPIVEKLEGNTP 227 Query: 155 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN-------HPDCVLMVL 207 RVLD P +G GK + Q+I+++ N + + Sbjct: 228 LLTGIRVLDGLYPSVQGGTCCASVSSIGGKIFISQSISKNSNSNCNIYVGCGENEFDIFR 287 Query: 208 LIDERPEE---VTEMQRLV--KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVII 262 +IDE ++ + + Q + K +++++ I + + +V Sbjct: 288 VIDEFYDQKIPIKDHQESIAQKTCLISNSSKMVTPTTEISVFTGITIGEYFRDMGLNVSF 347 Query: 263 LLDSITRLARAYNTVVPASGKVLTGGVDANALH-RPKRFFGAARNV------EEGGSLTI 315 ++DS + ++A N + G++L + L + +F+ A V E GS+T+ Sbjct: 348 IVDSTNQWSQAVNQIQEKLGEILPSETQSEVLTAKIGQFYNRAGRVRCLGSPERIGSITM 407 Query: 316 IATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL--TT 373 + A + I + L ++++++ FP D S ++ E+LL Sbjct: 408 VGIA-TQSEGDWANSITNCTINNSQVFWLLDKRLSQRNHFPTFDRISSNSKYEQLLDPYY 466 Query: 374 QEELQKMWILRKIIH-PMGEIDAMEFLINKLAM 405 + L++ + + + + +I Sbjct: 467 SSINPEFNRLKEKLQYILSKELELIKIIQLGEK 499 >UniRef50_A9GHR6 ATP synthase subunit alpha n=4 Tax=cellular organisms RepID=ATPA_SORC5 Length = 630 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 45/310 (14%), Positives = 102/310 (32%), Gaps = 30/310 (9%) Query: 10 PVSELITLGENMGL-ENLARMR-KQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRS 67 +++ G + + + +AR+ + L + S VL + QD G Sbjct: 21 KAAQVTETGTVLTVGDGIARVHGLSRAMAGELVEFTGSEGGSLMGLVLNLEQDNVGAAIF 80 Query: 68 ADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENA 127 D+S + D + + R + G+ G++ ++ P Sbjct: 81 GDTSSIKEGDAVKRTG---RIMEVPVGEATLGRVVNALG----------MPIDGKGPLET 127 Query: 128 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTML 187 + + E P + + + +D P+GRGQR LI+ + GKT + Sbjct: 128 KERRRVEVKAP-----GIIQRQPVTEPMQTGIKAIDAMIPVGRGQRELIIGDRQTGKTAV 182 Query: 188 LQNIAQSIAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHV 240 + + + + + I ++ V ++ L +VA+T E A Sbjct: 183 AVDAIINQ--KGKGVICVYVAIGQKLSTVRQVVDKLDAHGALEYTIIVAATASETAPLQF 240 Query: 241 QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKR 299 + + + + + + D +++ A AY + + + + R Sbjct: 241 IAPYTGVTIGEYFRDSGRHALCIYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSR 300 Query: 300 FFGAARNVEE 309 A + + Sbjct: 301 LLERAAKMAD 310 Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 37/112 (33%), Gaps = 2/112 (1%) Query: 301 FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY 360 + R+ + GGSLT + G + I + ++ L + V PAI+ Sbjct: 389 YEIVRDPKSGGSLTALPVIETQAG-DVSAYIPTNVISITDGQIFLEADLFYSGVRPAINV 447 Query: 361 NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL-INKLAMTKTNDD 411 S +R + LR + + A + A T+ + Sbjct: 448 GISVSRVGGNAQIKAMKSIAGTLRLDLAQYRAMAAFSQFASDLDAKTRAQLE 499 >UniRef50_Q98PM2 ATP SYNTHASE ALPHA CHAIN n=1 Tax=Mycoplasma pulmonis RepID=Q98PM2_MYCPU Length = 509 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 106/315 (33%), Gaps = 20/315 (6%) Query: 99 GKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLT 158 GK+ +GE + + + V ++ N + + Sbjct: 83 GKVVNI-DGEIVYPVTQNKTVVYEPNLRKGNIF--------FQPVGMLERQHLSEQLYTG 133 Query: 159 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE 218 +DL +PIGRGQR +IV + GKT + N + + + + I + + ++ Sbjct: 134 ILSIDLFNPIGRGQREIIVGDKQTGKTHIALNTIINQR--NSGVKCIYVSIGQNNKNLSN 191 Query: 219 MQRLVKG------EVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLAR 272 + +K ++ E A + + + A+ L DV+I+ D +T+ A Sbjct: 192 VYTTLKNANALDYTIIFEASSENAFDQYLIPHVAMAHAENL-SFNDDVLIVFDDLTKHAN 250 Query: 273 AYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVI 331 + K + + + + S+ + + +I Sbjct: 251 ICREISLLIDKPIGKEAFPPDIFFTHSKLLERSGRFIGRKSIAALPIVKT-VDGNLASLI 309 Query: 332 YEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMG 391 + ++ S K+ + PA+D + S +R + + Q L KI H Sbjct: 310 SSNLISISDGQIVTSTKLFLEGKIPAVDLDFSVSRTGSSIQKKSVAQVSAKLSKIYHAYI 369 Query: 392 EIDAMEFLINKLAMT 406 + + + +L Sbjct: 370 RQEKLSSIDYELNKE 384 >UniRef50_B4QHN0 ATP synthase subunit alpha n=2 Tax=Eukaryota RepID=B4QHN0_DROSI Length = 479 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 59/405 (14%), Positives = 123/405 (30%), Gaps = 99/405 (24%) Query: 6 LKNTPVSELITLGENMGL-ENLARMRKQDIIFAILKQHAKSGEDIFGDGV----LEILQD 60 L P ++L G + + + +AR ++ + A F G+ L + D Sbjct: 59 LGVAPKADLEETGRVLSIGDGIAR------VYGLNNIQADEM-VEFSSGLKGMALNLEPD 111 Query: 61 GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN 120 G + + + D + + + + ++ GD + G++ ++ Sbjct: 112 NVGVVVFGNDKLIKQGDIVKRTGAIV---DVPVGDELLGRVVDALGN----------AID 158 Query: 121 FDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP 180 N +++ P + + +D PIGRGQR LI+ Sbjct: 159 GKGAINTKDRFRVGIKAP-----GIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDR 213 Query: 181 KAGKTMLLQNIAQSIAYNH------PDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDE 234 + GKT L + + + + + I ++ V ++ Sbjct: 214 QTGKTALAIDTIINQKRFNEAQDESKKLYCIYVAIGQKRSTVAQIV-------------- 259 Query: 235 PASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANAL 294 KRL + A Y+ +V A+ ++ + Sbjct: 260 ----------------KRLTDSG-------------AMGYSVIVSATASDMSPAM----- 285 Query: 295 HRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRV 354 GGSLT + G + I + ++ L ++ K + Sbjct: 286 --------------GGGSLTALPVIETQAG-DVSAYIPTNVISITDGQIFLETELFYKGI 330 Query: 355 FPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFL 399 PAI+ S +R T+ Q ++ + E+ A Sbjct: 331 RPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQF 375 >UniRef50_A0D9M8 Chromosome undetermined scaffold_42, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0D9M8_PARTE Length = 603 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 56/383 (14%), Positives = 122/383 (31%), Gaps = 42/383 (10%) Query: 39 LKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSY------LAGPDDIYVS---PSQIRRF 89 L++ + + + IL + S + DIY S + Sbjct: 99 LQEITEGLSSSYIPKNVNILGLDQDRVWEFKPSSTIKIDSIISGGDIYGSVFENNVFEEH 158 Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 N+ ++ G++ Y KV EV + + + ++ P+ + + Sbjct: 159 NILASPSVQGRVTYIAPAGYYTLQDKVLEV---ELNEKKYQYGMSHVWPVRQPRPILEKL 215 Query: 150 GNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL- 208 + RVLD P G+ I P + G L ++A + N + + Sbjct: 216 DINTPIITGIRVLDGFFPAFLGETCCISGPAECG--YLEISLALTKQSNTQCMIYIGCAE 273 Query: 209 --------IDERPE---EVTEMQRLVK--GEVVASTFDEPASRHVQVAEMVIEKAKRLVE 255 + E PE E+ + + V +VA+ + + A+ + Sbjct: 274 SGNEMASVLSEYPELKIELKDKEESVNQRTCLVANPSQKSLGKRYASLYAGTTFAEYFRD 333 Query: 256 HKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDANALHRPKRFFGAARNVE------ 308 +V ++ D ++ + G++L + + A V+ Sbjct: 334 MGYNVGLIADQTSKWVETQTEISNRIGEILQEQEYPTFLASKLSPIYQRAGRVKCRGSPN 393 Query: 309 EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKE 368 GS+T+ + + I + L ++ K+ FPA+++ S + + Sbjct: 394 REGSITLFGVVSTE---DFKDPITIATLMNTKVFWGLDYQLKIKKHFPAVNWEISYSDQN 450 Query: 369 EL----LTTQEELQKMWILRKII 387 + LQ L+ I+ Sbjct: 451 SDPYFNEIDPDFLQLRNKLKNIL 473 >UniRef50_O57728 Endonuclease PI-Pho2 n=1 Tax=Pyrococcus horikoshii RepID=VATA_PYRHO Length = 964 Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 54/395 (13%), Positives = 131/395 (33%), Gaps = 57/395 (14%) Query: 56 EILQDGFGFLRSADSSYLAGPDDIYVSPS----------QIRRFNLRTGDTISGKIRPPK 105 E+L +R+ ++Y+ G +++ ++ + + + + SG+ + Sbjct: 473 ELLLSPSNVVRAFVNAYIKGKEEVEITLASEEGAYELSYLFAKLGIYVTISKSGEYYKVR 532 Query: 106 EGERYFALLKVNEVNFDK-PENARNKILFENLTPLHANSRLRME----------RGNGST 154 R EVN + F L + ++ R Sbjct: 533 VSRRGNLDTIPVEVNGMPKVLPYEDFRKFAKSIGLEEVAENHLQHIIFDEVIDVRYIPEP 592 Query: 155 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPE 214 +++ + + G + T+ +A+ V++ + ER Sbjct: 593 QEVYD--VTTETHNFVGGNMPTLLH----NTVTQHQLAKWSDAQ----VVIYIGCGERGN 642 Query: 215 EVTEMQR--------------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDV 260 E+T++ + + ++A+T + P + I A+ + DV Sbjct: 643 EMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDV 702 Query: 261 IILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNV------EEGGSL 313 ++ DS +R A A + ++ G A + F+ A V GS+ Sbjct: 703 ALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSV 762 Query: 314 TIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELL-- 371 ++I G E + + + L +A +R FPAI++ S + + + Sbjct: 763 SVIGAV-SPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKD 821 Query: 372 -TTQEELQKMWILR-KIIHPMGEIDAMEFLINKLA 404 + + +R K + + + ++ ++ + Sbjct: 822 WWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVG 856 Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 78/257 (30%), Gaps = 46/257 (17%) Query: 6 LKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHA--KSGEDIFGDG---------- 53 +K + E++ +GE + + R+ + + ++ A + GE + G G Sbjct: 20 MKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEPVVGTGASLSVELGPG 79 Query: 54 ----VLEILQDGFGFLRSADSSYLAGP--------------------------DDI--YV 81 + + +Q +R ++A DI V Sbjct: 80 LLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEV 139 Query: 82 SPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHA 141 + I + I G+I E Y + +V P ++ P+ Sbjct: 140 PETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKV--KTPSGEIKELKMYQRWPVRV 197 Query: 142 NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD 201 + + RV+D P +G I P +GK + + + + Sbjct: 198 KRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGKCVDGDTLVLTKEFGLIK 257 Query: 202 CVLMVLLIDERPEEVTE 218 + +D + ++ E Sbjct: 258 IKELYEKLDGKGRKIVE 274 >UniRef50_Q6KHZ3 ATP synthase alpha chain n=1 Tax=Mycoplasma mobile RepID=Q6KHZ3_MYCMO Length = 516 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 41/280 (14%), Positives = 98/280 (35%), Gaps = 17/280 (6%) Query: 148 ERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 207 + +D+ P+G+GQR LI+ + GKT + N I+ + + + + Sbjct: 120 RKSLNEPVQTGIASIDMLIPLGKGQRELIIGDRRTGKTSVALNTI--ISQKNTNTKAVYV 177 Query: 208 LIDERPEEVTEMQRLVK------GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 261 I +R + + ++ ++ E + + A+ + ++ DVI Sbjct: 178 AIGQRKTNINFIYNTLEEFDVLKNTIILEASSENLYHQFFALYVGMTHAENIAKNGDDVI 237 Query: 262 ILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNV--EEGGSLTIIAT 318 I++D +++ A Y + K + + A E G++T + Sbjct: 238 IVIDDLSKHANIYREMALLINKPAGREAFPGDIFFTHSKVLERAGKFKNENWGTITALPI 297 Query: 319 ALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQ 378 + +I + ++ +S ++A FPAID S +R + + + Sbjct: 298 VET-IEGDITSLISSNIISITDGQIIMSSELAASGKFPAIDIELSVSRTGSKVQNKVLSK 356 Query: 379 KMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKR 418 + K + + + F+++ + Sbjct: 357 YSKKISKTFSLYKRNLKYSEI-----KYNFSSEIFDILSK 391 >UniRef50_Q9UXU7 Pab atpA intein n=9 Tax=cellular organisms RepID=VATA_PYRAB Length = 1017 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 89/245 (36%), Gaps = 30/245 (12%) Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVAS 230 T+ +A+ V++ + ER E+T++ + + ++A+ Sbjct: 670 TVTQHQLAKWSDAQ----VVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIAN 725 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGV 289 T + P + I A+ + DV ++ DS +R A A + ++ G Sbjct: 726 TSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGY 785 Query: 290 DANALHRPKRFFGAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 A + F+ A V GS+++I G E + + + Sbjct: 786 PAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAV-SPPGGDFSEPVVQNTLRVVKVFW 844 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELL---TTQEELQKMWILR-KIIHPMGEIDAMEFL 399 L +A +R FPAI++ S + + + + + +R K + + + ++ + Sbjct: 845 ALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDPEWKAMRDKAMELLQKESELQEI 904 Query: 400 INKLA 404 + + Sbjct: 905 VRIVG 909 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 67/223 (30%), Gaps = 46/223 (20%) Query: 6 LKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHA--KSGEDIFGDG---------- 53 +K + E++ +GE + + R+ + + ++ A + GE + G G Sbjct: 20 MKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEPVIGTGSSLSVELGPG 79 Query: 54 ----VLEILQDGFGFLRSADSSYLAGP--------------------------DDI--YV 81 + + +Q +R ++A DI V Sbjct: 80 LLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKVKVGDKVVGGDIIGEV 139 Query: 82 SPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHA 141 + I + I G+I E Y + +V P ++ P+ Sbjct: 140 PETSIITHKIMVPPGIEGEIVEIAEEGEYTIEEVIAKV--KTPSGEIKELKMYQRWPVRV 197 Query: 142 NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGK 184 + + RV+D P +G I P +GK Sbjct: 198 KRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGK 240 >UniRef50_Q97CQ0 Tvo atpA intein n=3 Tax=Archaea RepID=VATA_THEVO Length = 776 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 89/247 (36%), Gaps = 30/247 (12%) Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVAS 230 T++ +A+ N +++ + ER E+TE+ + + ++A+ Sbjct: 422 TVIQHQLAKWSDAN----IVVYIGCGERGNEMTEILTTFPELKDPVSGQPLMDRTVLIAN 477 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGV 289 T + P + I A+ + DV ++ DS +R A A + ++ G Sbjct: 478 TSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGY 537 Query: 290 DANALHRPKRFFGAARNVE------EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 A R F+ + GS+T+I G + E + + + Sbjct: 538 PAYLGRRISEFYERSGRARLVSPEDRFGSITVIGAV-SPPGGDISEPVSQNTLRVTRVFW 596 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELL---TTQEELQKMWILR-KIIHPMGEIDAMEFL 399 L +A +R FP+I++ S + E L + + LR + + + ++ + Sbjct: 597 ALDASLANRRHFPSINWLNSYSLYTEDLRHWYDENVAKDWGSLRSQAMDILQRESELQEV 656 Query: 400 INKLAMT 406 + Sbjct: 657 AQLVGYD 663 Score = 57.8 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 58/189 (30%), Gaps = 32/189 (16%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGP------- 76 E+ A +R + + ++ + + + +Q ++ ++A Sbjct: 51 EDTAGIRPDEKVENTMRPLSVELGPGLLKSIYDGIQRPLDVIKETSGDFIARGLNPPPLD 110 Query: 77 -------------DDIYVSPSQIRR--------FNLRTGDTISGKIRPPKEGERYFALLK 115 +DI I + D +SGKI+ EG+R Sbjct: 111 RKKEWDFVPAVKKNDIVYPGQVIGTVQETSLITHRIIVPDGVSGKIKSIYEGKR----TV 166 Query: 116 VNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGL 175 + V E+ + P+ R+ + RV+D P+ +G Sbjct: 167 EDVVCTISTEHGDVDVNLMTTWPVRKARRVVRKLPPEIPLVTGQRVIDALFPVAKGGTAA 226 Query: 176 IVAPPKAGK 184 + P +GK Sbjct: 227 VPGPFGSGK 235 >UniRef50_Q6L1S7 A1AO H+ ATPase subunit A n=1 Tax=Picrophilus torridus RepID=Q6L1S7_PICTO Length = 922 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 92/247 (37%), Gaps = 30/247 (12%) Query: 185 TMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQR--------------LVKGEVVAS 230 T++ +++ + +++ + ER E+TE+ + + ++A+ Sbjct: 570 TVIQHQLSKWSDSD----IVVYVGCGERGNEMTEILSTFPELMDPKTGKPIMQRTVLIAN 625 Query: 231 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGV 289 T + P + + A+ + +V ++ DS +R A A + ++ G Sbjct: 626 TSNMPVAAREASIYTGVTIAEYYRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGY 685 Query: 290 DANALHRPKRFFGAARNV------EEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMEL 343 A R F+ + N + GS+T+I G + + + + + Sbjct: 686 PAYLGRRISEFYERSGNAQIIAEDQRTGSVTLIGAV-SPPGGDLSDPVVQNTLRVTRVFW 744 Query: 344 HLSRKIAEKRVFPAIDYNRSGTRKEELL---TTQEELQKMWILRKIIHPMGEID-AMEFL 399 L +A +R FP+I++ S + L T+ + K + + E + ++ + Sbjct: 745 ALDASLASRRHFPSINWLTSYSLYTNNLSKWYTENVGPDWPEIYKTMMDLLEKESELQEI 804 Query: 400 INKLAMT 406 + + Sbjct: 805 VQLVGYD 811 Score = 60.9 bits (146), Expect = 9e-08, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 62/193 (32%), Gaps = 40/193 (20%) Query: 24 ENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSP 83 E+ + +R + +++ K + + + +Q +R+ ++A + + P Sbjct: 52 EDTSGLRPGEKVYSTGKPLSVELGPGLLSSIYDGIQRPLDVIRAKTGDFIAKG--VNIPP 109 Query: 84 ----------------SQIR--------------RFNLRTGDTISGKIRPPKEGE--RYF 111 Q++ + + + G ++ K G+ Sbjct: 110 LNEEKLWDFKPLVNEGQQVKSNFIIGEVDETEIIKNKIMVPYGVEGTVKSIKSGKFKVSD 169 Query: 112 ALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRG 171 + + N D +I + + P+ R+ + RV+D P+ +G Sbjct: 170 TVAIIETKNGD------YEIKLKQIWPVREARRVFHKFPPEIPLITGQRVIDAFFPVAKG 223 Query: 172 QRGLIVAPPKAGK 184 + P +GK Sbjct: 224 GTVAVPGPFGSGK 236 >UniRef50_P17255 Endonuclease PI-SceI n=18 Tax=cellular organisms RepID=VATA_YEAST Length = 1071 Score = 181 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 89/232 (38%), Gaps = 25/232 (10%) Query: 204 LMVLLIDERPEEVTEMQR----------------LVKGEVVASTFDEPASRHVQVAEMVI 247 ++V ER E+ E+ + + +VA+T + P + I Sbjct: 733 VVVHNCGERGNEMAEVLMEFPELYTEMSGTKEPIMKRTTLVANTSNMPVAAREASIYTGI 792 Query: 248 EKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARN 306 A+ + K+V ++ DS +R A A + G++ G A + F+ A Sbjct: 793 TLAEYFRDQGKNVSMIADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGK 852 Query: 307 VEEGGS-----LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYN 361 GS I A+ G + + G + L +K+A+++ FP+I+ + Sbjct: 853 AVALGSPDRTGSVSIVAAVSPAGGDFSDPVTTATLGITQVFWGLDKKLAQRKHFPSINTS 912 Query: 362 RSGTRKEELL--TTQEELQKMWILR-KIIHPMGEIDAMEFLINKLAMTKTND 410 S ++ +L + +LR ++ + + +E ++ + + +D Sbjct: 913 VSYSKYTNVLNKFYDSNYPEFPVLRDRMKEILSNAEELEQVVQLVGKSALSD 964 Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 76/253 (30%), Gaps = 54/253 (21%) Query: 11 VSELITLGENMGLENLARMRKQDIIFAILKQHA------------KSGEDIFGDGVLEIL 58 + EL+ +G + + + R+ + ++ A K G G++E + Sbjct: 46 MYELVKVGHDNLVGEVIRIDGDKATIQVYEETAGLTVGDPVLRTGKPLSVELGPGLMETI 105 Query: 59 QDGFGFLRSADSSYLAGPDDIYVS-----PSQIR-------RFNLRTGDTISGKIRPPKE 106 DG ++ + IY+ P+ R + GD ISG Sbjct: 106 YDG---IQRPLKAIKEESQSIYIPRGIDTPALDRTIKWQFTPGKFQVGDHISGGDIYGSV 162 Query: 107 GE--------------RYFALLKVNEVNFDKPENARNKILFE---------NLTPLHANS 143 E + + + ++ F+ + P+ Sbjct: 163 FENSLISSHKILLPPRSRGTITWIAPAGEYTLDEKILEVEFDGKKSDFTLYHTWPVRVPR 222 Query: 144 RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 203 + + RVLD P +G I GKT++ Q++++ + Sbjct: 223 PVTEKLSADYPLLTGQRVLDALFPCVQGGTTCIPGAFGCGKTVISQSLSKYSNSD----A 278 Query: 204 LMVLLIDERPEEV 216 ++ + + V Sbjct: 279 IIYVGCFAKGTNV 291 >UniRef50_A9R780 Flagellum-specific ATP synthase n=1 Tax=Yersinia pestis Angola RepID=A9R780_YERPG Length = 389 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 94/294 (31%), Gaps = 59/294 (20%) Query: 113 LLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ 172 L +V + + L R + D+ ++ IG+GQ Sbjct: 102 LGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQ 161 Query: 173 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTF 232 R ++A GK++LL I + + Sbjct: 162 RVGLMAGSGVGKSVLLGMITRYTQADVVVVAAPAD------------------------- 196 Query: 233 DEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL-TGGVDA 291 E ++ E+ A + DV++L+DS+TR A A + + G+ T G Sbjct: 197 -ESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPP 255 Query: 292 NALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAE 351 +A R +A N G++T I T +AE Sbjct: 256 SAFSIIPRLAESAGNSSGNGTMTAIYTV-----------------------------LAE 286 Query: 352 KRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAM 405 +PAID ++S +R + ++ + +L++ A++ LI Sbjct: 287 AGHYPAIDISQSISRCMSQVIGSQQAKAASLLKQCYADYM---AIKPLIPLGGY 337 >UniRef50_A3LP04 Vacuolar H+-ATPase V1 sector, subunit A n=8 Tax=Saccharomycetaceae RepID=A3LP04_PICST Length = 1065 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 91/232 (39%), Gaps = 27/232 (11%) Query: 205 MVLLIDERPEEVTEMQR----------------LVKGEVVASTFDEPASRHVQVAEMVIE 248 +V ER E+ E+ + + +VA+T + P + I Sbjct: 728 LVHNCGERGNEMAEVLMEFPELFTEINGRKEPIMKRTTLVANTSNMPVAAREASIYTGIT 787 Query: 249 KAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARN- 306 A+ + K+V ++ DS +R A A + G++ G A + F+ A Sbjct: 788 LAEYFRDQGKNVSMIADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGKS 847 Query: 307 -----VEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYN 361 E GS++I+A G + + G + L +K+A+++ FP+I+ + Sbjct: 848 VALGSPERLGSVSIVAAV-SPAGGDFSDPVTTSTLGITQVFWGLDKKLAQRKHFPSINTS 906 Query: 362 RSGTRKEELL--TTQEELQKMWILR-KIIHPMGEIDAMEFLINKLAMTKTND 410 S ++ +L + LR KI + + + +E ++ + + +D Sbjct: 907 VSYSKYTNVLDKYYDANYPEFPALRNKIKEILSDAEELEQVVQLVGKSALSD 958 Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 82/256 (32%), Gaps = 60/256 (23%) Query: 11 VSELITLGENMGLENLARMRKQDIIFAILKQHA------------KSGEDIFGDGVLEIL 58 + EL+ +G + + + R+ + ++ A K G G++E + Sbjct: 45 MYELVKVGHDTLVGEVIRISGDKATIQVYEETAGVTVGDPVLRTGKPLSVELGPGLMETI 104 Query: 59 QDGFGFLRSADSSYLAGPDDIYVS-----PSQIRRFN-------LRTGDTISG------- 99 DG ++ + IY+ P+ R N L+ GD I+G Sbjct: 105 YDG---IQRPLKAIKEQSQSIYIPRGIDAPALSRTVNYDFTPGSLKVGDHITGGDIFGSI 161 Query: 100 -------------------KIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLH 140 I E Y V EV + + ++ + P+ Sbjct: 162 YENSLLDDHKILLPPRARGTITSIAEAGSYNVDDNVLEV---EFDGKKHSYSMMHTWPVR 218 Query: 141 ANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200 + + RVLD P +G I GKT++ Q++++ + Sbjct: 219 VPRPVAEKLAADYPLLTGQRVLDSLFPCVQGGTTCIPGAFGCGKTVISQSLSKFSNSD-- 276 Query: 201 DCVLMVLLIDERPEEV 216 V++ + + +V Sbjct: 277 --VIIYVGCFAKGTKV 290 >UniRef50_C5DTL5 ZYRO0C09504p n=2 Tax=Saccharomycetaceae RepID=C5DTL5_ZYGRO Length = 1067 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 89/232 (38%), Gaps = 25/232 (10%) Query: 204 LMVLLIDERPEEVTEMQR----------------LVKGEVVASTFDEPASRHVQVAEMVI 247 L+V ER E+ E+ + + +VA+T + P + I Sbjct: 729 LVVHNCGERGNEMAEVLMEFPELFTEVNGHKEPIMKRTTLVANTSNMPVAAREASIYTGI 788 Query: 248 EKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARN 306 A+ + K++ ++ DS +R A A + G++ G A + F+ A Sbjct: 789 TLAEYFRDQGKNISMIADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGK 848 Query: 307 VEEGGS-----LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYN 361 GS I A+ G + + G + L +K+A+++ FP+I+ + Sbjct: 849 AVALGSPDRTGSVSIVAAVSPAGGDFSDPVTTATLGITQVFWGLDKKLAQRKHFPSINTS 908 Query: 362 RSGTRKEELL--TTQEELQKMWILRKII-HPMGEIDAMEFLINKLAMTKTND 410 S ++ +L + Q+ LR I + + +E ++ + + +D Sbjct: 909 VSYSKYTNVLGKYYDQNHQEFPALRDHIKEILSNAEELEQVVQLVGKSALSD 960 Score = 87.5 bits (215), Expect = 9e-16, Method: Composition-based stats. Identities = 37/256 (14%), Positives = 81/256 (31%), Gaps = 60/256 (23%) Query: 11 VSELITLGENMGLENLARMRKQDIIFAILKQHA------------KSGEDIFGDGVLEIL 58 + EL+ +G + + + R+ + ++ K G G++E + Sbjct: 46 MYELVRVGHDNLVGEVIRIDADKATIQVYEETTGVTVGDPVLRTGKPLSVELGPGLMETI 105 Query: 59 QDGFGFLRSADSSYLAGPDDIYVS-----PSQIR-------RFNLRTGDTISG------- 99 DG ++ S + IY+ P+ R + R GD ++G Sbjct: 106 YDG---IQRPLKSIKDKSESIYIPRGVNAPALSRDAKWHFVPSDHRVGDHLAGGDIFGTV 162 Query: 100 ----------KIRPPKEGERYFALLKVNEVNFDKPENARNKILFE---------NLTPLH 140 + PP+ + + E ++ F+ + P+ Sbjct: 163 FENNLIESHKIMLPPRARG---TITWIATEGEYTIEEKVIEVEFDGQKNGYSMFHTWPVR 219 Query: 141 ANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP 200 + + RVLD P +G I GKT++ Q++++ + Sbjct: 220 VPRPVAEKLSADVPLLTGQRVLDALFPCVQGGTTCIPGAFGCGKTVISQSLSKFSNSD-- 277 Query: 201 DCVLMVLLIDERPEEV 216 ++ + + EV Sbjct: 278 --AIVYVGCFAKGTEV 291 >UniRef50_Q255D8 V-type ATP synthase beta chain n=52 Tax=Bacteria RepID=VATB_CHLFF Length = 438 Score = 176 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 48/343 (13%), Positives = 111/343 (32%), Gaps = 30/343 (8%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 L TGD + R + + + + F + + + + R Sbjct: 61 GLSTGDRVIFLGRAMEVTYGESLIGRRLSGIGKPIDGEGEC--FGDPIAISTPTFNPVCR 118 Query: 150 GNGSTE-DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 ++D+ + + + Q+ I + LL IA + ++++ Sbjct: 119 IVPRDMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNALLMRIAAQTDAD----IVIIGG 174 Query: 209 IDE-------RPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRL-VEHKKDV 260 + EE + K + + V + +M + A++ V+H K+V Sbjct: 175 MGLTFVDYSFFVEESKRLGFSDKCVMFIHKAVDAPVECVLIPDMALACAEKFAVDHNKNV 234 Query: 261 IILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNVEEGGSLTIIATA 319 ++LL +T A A + ++ G + + A ++ +GGS+T+I + Sbjct: 235 LVLLTDMTAFADALKEIAITMDQIPANRGYPGSLYSDLALRYEKAVDIAKGGSITLI-SV 293 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQ----E 375 G + + + + +L ID S +R ++L+ + + Sbjct: 294 TTMPGDDITHPVPDNTGFITEGQFYLKNNR--------IDPFGSLSRLKQLVIGKVTRED 345 Query: 376 ELQKMWILRKIIHP-MGEIDAMEFLINKLAMTKTNDDFFEMMK 417 L ++ + M K F E+ + Sbjct: 346 HGDLANSLIRLYADSRKAAERMAMGFKLSNWDKKLLAFAELFE 388 >UniRef50_A0D564 ATP synthase subunit alpha n=2 Tax=Paramecium tetraurelia RepID=A0D564_PARTE Length = 612 Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 102/312 (32%), Gaps = 49/312 (15%) Query: 2 NLTELKNTPVSELITLGENMGL-ENLARMRKQDIIFAILKQHAKSGEDIFGDGV----LE 56 N+++L ++ G + + + +AR +F + + A F GV L Sbjct: 41 NISQLN-----DIKEYGTVISIGDGIAR------VFGLTQVQAGEM-VEFSSGVRGMALN 88 Query: 57 ILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKV 116 + D G + + + D + + + + ++ G + G++ Sbjct: 89 LETDNVGIVVLGNDREIQEGDIVKRTGAIV---DVPIGMEMLGRVFDALGN--------- 136 Query: 117 NEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLI 176 ++ P + E P + + + +D PIGRGQR LI Sbjct: 137 -PIDGHGPVKTNTRRRVELKAP-----GIIPRKSVHEPMQTGLKAVDCLVPIGRGQRELI 190 Query: 177 VAPPKAGKTMLLQNIAQSIAYN------HPDCVLMVLLIDERPEEVTEM-------QRLV 223 + + GKT + + + N + + + I ++ V + + Sbjct: 191 IGDRQTGKTAIAIDTIINQKPNFDSGDKNKQLYCIYVAIGQKRSTVANLVKILTQAGAMK 250 Query: 224 KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGK 283 VVA+T E A + ++ +I+ D +++ A AY + + Sbjct: 251 YTIVVAATASEAAPLQYLAPYSGCAIGEYFRDNGMHALIIYDDLSKQAVAYRQMSLLLRR 310 Query: 284 VLTG-GVDANAL 294 + Sbjct: 311 PPGREAYPGDVF 322 >UniRef50_C0QV77 V-type ATP synthase subunit B n=40 Tax=Bacteria RepID=C0QV77_BRAHW Length = 440 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 109/319 (34%), Gaps = 23/319 (7%) Query: 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMER 149 + T + RPP+ + + + E + S + R Sbjct: 60 GIPTNAEVVFLGRPPRLKVSELLAGRFFNAYGEPIDGGAEIEGKE--VEIGGPSVNPVRR 117 Query: 150 GNGSTED-LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLL 208 S +DL + + GQ+ A P +L +A + +++ Sbjct: 118 KQPSELIATGIAGIDLNNTLVTGQKIPFFADPDQPYNAVLAQVALRAEADK----IILGG 173 Query: 209 ID-------ERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRL-VEHKKDV 260 + TE L K +T D+P + + +M A+ VEHK+ V Sbjct: 174 MGLSNDDYLSFKNTFTEAGALDKIICFINTTDDPPVERLLIPDMACTAAEYFAVEHKQKV 233 Query: 261 IILLDSITRLARAYNTVVPASGKVLTG-GVDANALHRPKRFFGAARNVEEGGSLTIIATA 319 ++LL +T A A V ++ + + + + + A +GGS+TIIA Sbjct: 234 LVLLTDMTLYADALAIVSNKMDQIPSKDSMPGSLYSDLAKIYEKAAQFPDGGSITIIA-V 292 Query: 320 LIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQ- 378 + + + +L+L R ++ ID RS +R ++L+ ++ + Sbjct: 293 TTLNEGDITHAVPDNTGYITEGQLYLRRD-SDIGK-TIIDPFRSLSRLKQLVIGKKTRED 350 Query: 379 ---KMWILRKIIHPMGEID 394 M L ++ Sbjct: 351 HPAVMNTLVRLYSDAANAK 369 >UniRef50_B9TD12 Transcription termination factor rho, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9TD12_RICCO Length = 435 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 91/207 (43%), Positives = 137/207 (66%), Gaps = 9/207 (4%) Query: 40 KQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISG 99 + + + G+L++L D + F+R+ S YLAG DD+Y+S S +R++ LR GD ++G Sbjct: 108 NEVREDDVLVPAAGILDVL-DNYAFVRT--SGYLAGVDDVYLSLSLVRKYGLRRGDAVAG 164 Query: 100 KIRPPKEGER---YFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTED 156 ++R P+EGER + +++++ VN PE A+N+ F P H RLRME + ++ Sbjct: 165 QVRQPREGERREKFNPMVRIDAVNGADPELAKNRPDFATFVPTHPTDRLRMET---TPDN 221 Query: 157 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEV 216 LT R+LDLA+PIG+GQRGL+ P K+G+T LL++I S+ N+P+ LMV+L+DERPEEV Sbjct: 222 LTGRILDLAAPIGKGQRGLVTGPTKSGRTTLLRSIGASLTANNPEAHLMVVLLDERPEEV 281 Query: 217 TEMQRLVKGEVVASTFDEPASRHVQVA 243 T+ QR +KGEVVAST P S + Sbjct: 282 TDFQRAIKGEVVASTSTGPPSTTSRRP 308 >UniRef50_A5DXZ0 Vacuolar ATP synthase catalytic subunit A n=6 Tax=Saccharomycetaceae RepID=A5DXZ0_LODEL Length = 1034 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 87/231 (37%), Gaps = 25/231 (10%) Query: 205 MVLLIDERPEEVTEMQR----------------LVKGEVVASTFDEPASRHVQVAEMVIE 248 +V ER E+ E+ + + +VA+T + P + I Sbjct: 697 LVHNCGERGNEMAEVLMEFPELYTEIDGRKEPIMKRTTLVANTSNMPVAAREASIYTGIT 756 Query: 249 KAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLT-GGVDANALHRPKRFFGAARNV 307 A+ + K+V ++ DS +R A A + G++ G A + F+ A Sbjct: 757 LAEYFRDQGKNVSMIADSSSRWAEALREISGRLGEMPADQGFPAYLGAKLASFYERAGKA 816 Query: 308 EEGGS-----LTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNR 362 GS + A+ G + + G + L +K+A+++ FP+I+ + Sbjct: 817 TALGSPDRVGSVSVVAAVSPAGGDFSDPVTTATLGITQVFWGLDKKLAQRKHFPSINTSV 876 Query: 363 SGTRKEELL--TTQEELQKMWILR-KIIHPMGEIDAMEFLINKLAMTKTND 410 S ++ +L + LR KI + + +E ++ + + +D Sbjct: 877 SYSKYTNILNKYYDSNYAEFPQLRNKIKEILSNAEELEQVVQLVGKSALSD 927 Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 80/253 (31%), Gaps = 54/253 (21%) Query: 11 VSELITLGENMGLENLARMRKQDIIFAILKQHA------------KSGEDIFGDGVLEIL 58 + EL+ +G + + + R+ + ++ A G G+L + Sbjct: 42 MYELVKVGHDNLVGEVIRINGDKATIQVYEETAGVTVGDPVLRTGAPLSAELGPGLLNTI 101 Query: 59 QDGFGFLRSADSSYLAGPDDIYVSPSQ------------IRRFNLRTGDTISG------- 99 DG ++ + IY+ + L+ GD I+G Sbjct: 102 YDG---IQRPLKEIKDETNSIYIPRGIDVPALSKTVQYDFKPGQLKVGDHITGGDIFGSV 158 Query: 100 ----------KIRPPKEGERYFAL------LKVNEVNFDKPENARNKILFENLTPLHANS 143 + PP+ ++ + V + + ++K + P+ Sbjct: 159 FENSLLDDHKILLPPRARGTITSIAEAGSYTVEDTVLEVEFDGKKHKYSMMHTWPVRVPR 218 Query: 144 RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV 203 + + RVLD P +G I GKT++ Q++++ + V Sbjct: 219 PVAEKLTADYPLLTGQRVLDSLFPCVQGGTTCIPGAFGCGKTVISQSLSKYSNSD----V 274 Query: 204 LMVLLIDERPEEV 216 ++ + + +V Sbjct: 275 IIYVGCFTKGTQV 287 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.132 0.318 Lambda K H 0.267 0.0408 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,362,183,888 Number of Sequences: 3077464 Number of extensions: 100438865 Number of successful extensions: 439943 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 696 Number of HSP's successfully gapped in prelim test: 337 Number of HSP's that attempted gapping in prelim test: 436648 Number of HSP's gapped (non-prelim): 1285 length of query: 419 length of database: 1,040,396,356 effective HSP length: 131 effective length of query: 288 effective length of database: 637,248,572 effective search space: 183527588736 effective search space used: 183527588736 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 94 (40.8 bits)