BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (489 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0A9J2 Ribonuclease G n=523 Tax=cellular organisms RepI... 1004 0.0 UniRef50_Q0ABM4 Ribonuclease G n=2 Tax=Proteobacteria RepID=Q0AB... 568 e-160 UniRef50_C4K6Y9 RNase G (Ribonuclease G) n=2 Tax=Enterobacteriac... 567 e-160 UniRef50_A7C082 Ribonuclease G and E n=1 Tax=Beggiatoa sp. PS Re... 535 e-150 UniRef50_A5EVP9 Ribonuclease g n=16 Tax=Gammaproteobacteria RepI... 487 e-136 UniRef50_D0LZK2 Ribonuclease, Rne/Rng family n=1 Tax=Haliangium ... 437 e-121 UniRef50_C8W5Q7 Ribonuclease, Rne/Rng family n=11 Tax=Bacteria R... 429 e-118 UniRef50_A6GBN9 Ribonuclease G n=1 Tax=Plesiocystis pacifica SIR... 427 e-118 UniRef50_A0LIP4 RNAse G n=22 Tax=Bacteria RepID=A0LIP4_SYNFM 426 e-117 UniRef50_B0TWF6 Ribonuclease G n=17 Tax=Francisella RepID=B0TWF6... 416 e-114 UniRef50_A5WCI8 RNAse G n=4 Tax=Moraxellaceae RepID=A5WCI8_PSYWF 402 e-110 UniRef50_B8FM65 Ribonuclease, Rne/Rng family n=1 Tax=Desulfatiba... 394 e-108 UniRef50_C9KMZ9 Ribonuclease G n=2 Tax=Veillonellaceae RepID=C9K... 381 e-104 UniRef50_A3EQR7 Ribonucleases G and E n=3 Tax=Leptospirillum Rep... 375 e-102 UniRef50_A1HNZ2 Ribonuclease, Rne/Rng family n=1 Tax=Thermosinus... 360 1e-97 UniRef50_A4XJ17 Ribonuclease G n=7 Tax=Clostridia RepID=A4XJ17_C... 358 3e-97 UniRef50_B2KEH9 Ribonuclease, Rne/Rng family n=1 Tax=Elusimicrob... 352 1e-95 UniRef50_C1A932 Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca T... 352 2e-95 UniRef50_B8CXZ3 Ribonuclease, Rne/Rng family n=1 Tax=Halothermot... 352 3e-95 UniRef50_Q1PY04 Strongly similar to ribonuclease E (RNase E) n=1... 351 5e-95 UniRef50_UPI0001C430FE cytosolic axial filament protein n=1 Tax=... 350 5e-95 UniRef50_Q1IRN1 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 347 4e-94 UniRef50_C1F7B7 Ribonuclease, Rne/Rng family, insertion n=2 Tax=... 344 4e-93 UniRef50_B5JNK0 Ribonuclease, Rne/Rng family n=1 Tax=Verrucomicr... 343 1e-92 UniRef50_Q1D0P4 Ribonuclease, Rne/Rng family n=7 Tax=Proteobacte... 343 1e-92 UniRef50_A9ESZ7 Ribonuclease G n=1 Tax=Sorangium cellulosum 'So ... 341 3e-92 UniRef50_UPI0001C31D95 ribonuclease, Rne/Rng family n=1 Tax=Cone... 340 6e-92 UniRef50_Q01YX3 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 339 1e-91 UniRef50_B3DX65 Ribonuclease G and E n=7 Tax=Verrucomicrobia Rep... 338 4e-91 UniRef50_A8MHL2 Ribonuclease, Rne/Rng family n=2 Tax=Alkaliphilu... 337 5e-91 UniRef50_C6D805 Ribonuclease, Rne/Rng family n=3 Tax=Bacillales ... 337 6e-91 UniRef50_A7HQG8 Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculu... 336 9e-91 UniRef50_A7H8A5 Ribonuclease, Rne/Rng family n=1 Tax=Anaeromyxob... 336 1e-90 UniRef50_D2R4N9 Ribonuclease, Rne/Rng family n=2 Tax=Planctomyce... 336 1e-90 UniRef50_B0VJP4 Ribonuclease G n=1 Tax=Candidatus Cloacamonas ac... 333 1e-89 UniRef50_Q9K8J2 Ribonuclease G (Cytosolic axial filament protein... 331 5e-89 UniRef50_B1I4P9 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 330 5e-89 UniRef50_C4PNX0 Ribonuclease E n=17 Tax=Chlamydiales RepID=C4PNX... 328 2e-88 UniRef50_B1H0J1 Ribonuclease G n=1 Tax=uncultured Termite group ... 320 6e-86 UniRef50_D1AAW2 Ribonuclease, Rne/Rng family n=1 Tax=Thermomonos... 317 6e-85 UniRef50_C6E0U6 Ribonuclease, Rne/Rng family n=8 Tax=Desulfuromo... 312 1e-83 UniRef50_C6MTB8 Ribonuclease, Rne/Rng family n=1 Tax=Geobacter s... 312 2e-83 UniRef50_Q0AWI9 RNAse G n=1 Tax=Syntrophomonas wolfei subsp. wol... 312 2e-83 UniRef50_C6JJB6 Ribonuclease G and E n=2 Tax=Fusobacterium RepID... 311 2e-83 UniRef50_D1B5Z1 Ribonuclease, Rne/Rng family n=3 Tax=Synergistac... 310 7e-83 UniRef50_C7Q8B4 Ribonuclease, Rne/Rng family n=1 Tax=Catenulispo... 306 1e-81 UniRef50_Q2P196 Ribonuclease E n=28 Tax=Proteobacteria RepID=Q2P... 305 2e-81 UniRef50_B8HA23 Ribonuclease, Rne/Rng family n=1 Tax=Arthrobacte... 305 2e-81 UniRef50_D1N7U6 Ribonuclease, Rne/Rng family n=2 Tax=Lentisphaer... 303 1e-80 UniRef50_D2SCS1 Ribonuclease, Rne/Rng family n=39 Tax=Bacteria R... 303 1e-80 UniRef50_A0JXK2 Ribonuclease, Rne/Rng family n=4 Tax=Actinomycet... 301 4e-80 UniRef50_C7QYR2 Ribonuclease, Rne/Rng family n=1 Tax=Jonesia den... 300 6e-80 UniRef50_C8NQN5 Ribonuclease E n=5 Tax=Corynebacterium RepID=C8N... 300 7e-80 UniRef50_D1BDM1 Ribonuclease, Rne/Rng family n=1 Tax=Sanguibacte... 300 8e-80 UniRef50_D2PUT1 Ribonuclease, Rne/Rng family n=1 Tax=Kribbella f... 300 9e-80 UniRef50_D2NSV3 Ribonuclease G and E n=2 Tax=Rothia mucilaginosa... 299 1e-79 UniRef50_C3W9J7 Ribonuclease G and E n=1 Tax=Fusobacterium morti... 299 2e-79 UniRef50_C0VZF1 Ribonuclease E n=1 Tax=Actinomyces coleocanis DS... 299 2e-79 UniRef50_C0ZAL2 Putative ribonuclease G n=1 Tax=Brevibacillus br... 298 3e-79 UniRef50_C7NH23 RNAse G n=1 Tax=Kytococcus sedentarius DSM 20547... 298 3e-79 UniRef50_D0WNB8 Putative S1 RNA binding domain protein n=1 Tax=A... 296 8e-79 UniRef50_D1BV45 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycet... 296 9e-79 UniRef50_C8XF15 Ribonuclease, Rne/Rng family n=1 Tax=Nakamurella... 296 1e-78 UniRef50_C0XRI1 Ribonuclease E (Fragment) n=2 Tax=Corynebacteriu... 296 1e-78 UniRef50_D2LS23 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus ce... 296 2e-78 UniRef50_B2GGD5 Putative ribonuclease n=1 Tax=Kocuria rhizophila... 296 2e-78 UniRef50_C7LYB0 Ribonuclease, Rne/Rng family n=1 Tax=Acidimicrob... 295 2e-78 UniRef50_C7MPQ3 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycet... 295 2e-78 UniRef50_A4F9K3 Ribonuclease, Rne/Rng family n=1 Tax=Saccharopol... 295 2e-78 UniRef50_B0K422 Ribonuclease, Rne/Rng family n=12 Tax=Thermoanae... 295 4e-78 UniRef50_A6CTK6 Cytosolic axial filament protein n=1 Tax=Bacillu... 294 4e-78 UniRef50_A8ZW09 Ribonuclease, Rne/Rng family n=2 Tax=Desulfobact... 294 5e-78 UniRef50_A8L1W0 Ribonuclease, Rne/Rng family n=25 Tax=Actinobact... 294 5e-78 UniRef50_C9RQU1 Ribonuclease, Rne/Rng family n=1 Tax=Fibrobacter... 294 6e-78 UniRef50_A0LJB4 RNAse E n=1 Tax=Syntrophobacter fumaroxidans MPO... 292 2e-77 UniRef50_Q3A2X7 Ribonuclease E n=3 Tax=Bacteria RepID=Q3A2X7_PELCD 291 3e-77 UniRef50_C4RPB5 Ribonuclease Rne/Rng n=1 Tax=Micromonospora sp. ... 290 7e-77 UniRef50_D1SD19 Ribonuclease, Rne/Rng family n=1 Tax=Micromonosp... 290 1e-76 UniRef50_D0L1K6 Ribonuclease, Rne/Rng family n=1 Tax=Halothiobac... 290 1e-76 UniRef50_Q1YTQ8 Ribonuclease E n=1 Tax=gamma proteobacterium HTC... 290 1e-76 UniRef50_A8M0Z2 Ribonuclease, Rne/Rng family n=2 Tax=Salinispora... 290 1e-76 UniRef50_C8PW15 Ribonuclease E n=1 Tax=Enhydrobacter aerosaccus ... 288 2e-76 UniRef50_B2HMG4 Ribonuclease E Rne n=28 Tax=Mycobacterium RepID=... 288 4e-76 UniRef50_B8DVT8 Ribonuclease G n=7 Tax=Bifidobacterium RepID=B8D... 287 6e-76 UniRef50_B5EL09 Ribonuclease, Rne/Rng family n=2 Tax=Acidithioba... 287 8e-76 UniRef50_A6WDN2 Ribonuclease, Rne/Rng family n=1 Tax=Kineococcus... 286 1e-75 UniRef50_D0LAJ7 Ribonuclease, Rne/Rng family n=1 Tax=Gordonia br... 286 1e-75 UniRef50_A0R152 Ribonuclease, Rne/Rng family protein n=9 Tax=Cor... 286 1e-75 UniRef50_D1BNE2 Ribonuclease, Rne/Rng family n=3 Tax=Veillonella... 286 1e-75 UniRef50_C1DR24 Ribonuclease E n=27 Tax=Gammaproteobacteria RepI... 285 3e-75 UniRef50_A3JIF1 Ribonucleases G and E n=2 Tax=Gammaproteobacteri... 285 3e-75 UniRef50_Q2LU58 Ribonuclease E n=1 Tax=Syntrophus aciditrophicus... 285 3e-75 UniRef50_A4AGL0 Ribonuclease G n=3 Tax=Actinobacteria (class) Re... 284 5e-75 UniRef50_C2KPN3 Ribonuclease G n=3 Tax=Actinomycetaceae RepID=C2... 284 7e-75 UniRef50_Q1K0W4 Ribonuclease, Rne/Rng family n=1 Tax=Desulfuromo... 283 8e-75 UniRef50_Q2S597 Ribonuclease, Rne/Rng family subfamily n=1 Tax=S... 283 1e-74 UniRef50_C3PI06 Ribonuclease E n=3 Tax=Corynebacterium RepID=C3P... 283 1e-74 UniRef50_C5CAZ2 Ribonuclease, Rne/Rng family n=1 Tax=Micrococcus... 283 1e-74 UniRef50_A8FWL8 Ribonuclease, Rne/Rng family n=38 Tax=Gammaprote... 283 1e-74 UniRef50_B4RR31 Rne n=31 Tax=Neisseriaceae RepID=B4RR31_NEIG2 283 1e-74 UniRef50_D1Y9V9 S1 RNA binding domain protein n=3 Tax=Propioniba... 283 2e-74 UniRef50_UPI0001BC2E10 putative ribonuclease n=1 Tax=Brevibacter... 282 2e-74 UniRef50_Q0A8Q8 Ribonuclease E n=8 Tax=Gammaproteobacteria RepID... 282 3e-74 UniRef50_C2BMV7 Ribonuclease E n=3 Tax=Corynebacterium RepID=C2B... 280 8e-74 UniRef50_B6BTS7 Ribonuclease E n=2 Tax=Betaproteobacteria RepID=... 280 1e-73 UniRef50_C5VAX0 Ribonuclease E n=5 Tax=Corynebacterium RepID=C5V... 280 1e-73 UniRef50_D2RC82 S1 RNA binding domain protein n=8 Tax=Bifidobact... 279 2e-73 UniRef50_A6VXP7 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteo... 278 2e-73 UniRef50_B5JUW5 Ribonuclease E n=1 Tax=gamma proteobacterium HTC... 278 3e-73 UniRef50_A8F3K6 Ribonuclease, Rne/Rng family n=1 Tax=Thermotoga ... 278 3e-73 UniRef50_Q1QX63 Ribonuclease E n=5 Tax=Gammaproteobacteria RepID... 278 4e-73 UniRef50_Q0VQP0 Phosphoric diester hydrolase n=5 Tax=Gammaproteo... 278 4e-73 UniRef50_Q9ZAC0 Cytoplasmic axial filament protein (Fragment) n=... 276 9e-73 UniRef50_A3ZLB1 Ribonuclease E n=4 Tax=Planctomycetaceae RepID=A... 276 1e-72 UniRef50_Q2SK60 Ribonucleases G and E n=3 Tax=Gammaproteobacteri... 276 1e-72 UniRef50_Q1NUM8 Ribonuclease E and G n=2 Tax=Deltaproteobacteria... 275 2e-72 UniRef50_C9LKU5 Cytoplasmic axial filament protein n=1 Tax=Diali... 275 2e-72 UniRef50_Q6AIU3 Probable RNAse E n=1 Tax=Desulfotalea psychrophi... 275 3e-72 UniRef50_A6LDG7 Ribonuclease G n=21 Tax=Bacteria RepID=A6LDG7_PARD8 275 3e-72 UniRef50_B1VGM2 Ribonuclease E n=1 Tax=Corynebacterium urealytic... 275 4e-72 UniRef50_A8PMW2 Ribonuclease E (RNase E) n=1 Tax=Rickettsiella g... 274 6e-72 UniRef50_B0VED2 Ribonuclease E (RNase E): endoribonuclease for r... 273 1e-71 UniRef50_Q6FEY0 Ribonuclease E (RNase E): endoribonuclease for r... 273 2e-71 UniRef50_Q4JWU2 Ribonuclease E n=2 Tax=Corynebacterium jeikeium ... 272 2e-71 UniRef50_Q1MQA2 Ribonucleases G and E n=2 Tax=Desulfovibrionacea... 272 3e-71 UniRef50_C5CEM0 Ribonuclease, Rne/Rng family n=1 Tax=Kosmotoga o... 271 4e-71 UniRef50_Q83MU7 Ribonuclease G n=2 Tax=Tropheryma whipplei RepID... 271 4e-71 UniRef50_C0WDS2 Ribonuclease n=1 Tax=Acidaminococcus sp. D21 Rep... 271 4e-71 UniRef50_Q7MM07 Ribonuclease E n=15 Tax=Gammaproteobacteria RepI... 271 4e-71 UniRef50_C0VHW5 Ribonuclease E (RNase E): endoribonuclease for r... 270 7e-71 UniRef50_D2RM73 Ribonuclease, Rne/Rng family n=1 Tax=Acidaminoco... 270 8e-71 UniRef50_Q11NU1 Ribonuclease G n=10 Tax=Bacteroidetes RepID=Q11N... 270 9e-71 UniRef50_B8IYX2 Ribonuclease, Rne/Rng family n=10 Tax=Desulfovib... 268 2e-70 UniRef50_A4A8E4 Ribonuclease E n=5 Tax=unclassified Gammaproteob... 268 3e-70 UniRef50_Q0F3G3 Ribonucleases G and E n=1 Tax=Mariprofundus ferr... 268 5e-70 UniRef50_A5WCP3 RNAse E n=3 Tax=Proteobacteria RepID=A5WCP3_PSYWF 266 9e-70 UniRef50_P21513 Ribonuclease E n=119 Tax=Gammaproteobacteria Rep... 266 9e-70 UniRef50_A9VIS0 Ribonuclease, Rne/Rng family n=78 Tax=Bacillus R... 266 1e-69 UniRef50_Q8K9J9 Ribonuclease E n=5 Tax=Buchnera aphidicola RepID... 266 1e-69 UniRef50_Q2YA54 Ribonuclease E n=7 Tax=Betaproteobacteria RepID=... 266 1e-69 UniRef50_C4X6M8 RNase E n=25 Tax=Gammaproteobacteria RepID=C4X6M... 266 2e-69 UniRef50_C8N8A8 Ribonuclease G and E n=19 Tax=Proteobacteria Rep... 265 3e-69 UniRef50_B6YQX9 Ribonuclease G n=23 Tax=Bacteroidales RepID=B6YQ... 264 7e-69 UniRef50_A8UTH4 Cytoplasmic axial filament protein n=1 Tax=Hydro... 263 7e-69 UniRef50_Q31PW1 Ribonuclease, Rne/Rng family n=19 Tax=Cyanobacte... 263 1e-68 UniRef50_Q2B6H0 Cytosolic axial filament protein n=1 Tax=Bacillu... 263 1e-68 UniRef50_B8DIL9 Ribonuclease, Rne/Rng family n=3 Tax=Desulfovibr... 262 2e-68 UniRef50_C9XNN6 Ribonuclease g n=8 Tax=Clostridium RepID=C9XNN6_... 262 3e-68 UniRef50_Q2RSE6 RNAse E n=1 Tax=Rhodospirillum rubrum ATCC 11170... 261 3e-68 UniRef50_C7RBE6 Ribonuclease, Rne/Rng family n=1 Tax=Kangiella k... 259 1e-67 UniRef50_C5BU48 Ribonuclease E n=1 Tax=Teredinibacter turnerae T... 259 1e-67 UniRef50_B3T2A0 Putative S1 RNA-binding domain protein n=2 Tax=p... 259 1e-67 UniRef50_C4LJU7 Ribonuclease E n=1 Tax=Corynebacterium kroppenst... 258 2e-67 UniRef50_Q5WES2 Ribonuclease G n=1 Tax=Bacillus clausii KSM-K16 ... 258 4e-67 UniRef50_C1PAJ8 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus co... 258 4e-67 UniRef50_B0BR35 Ribonuclease E n=14 Tax=Pasteurellaceae RepID=B0... 257 8e-67 UniRef50_A9ADG1 Ribonuclease, Rne/Rng family n=89 Tax=Betaproteo... 256 2e-66 UniRef50_Q492Q0 Ribonuclease E n=1 Tax=Candidatus Blochmannia pe... 254 8e-66 UniRef50_Q2JW46 Ribonuclease, Rne/Rng family n=4 Tax=Synechococc... 253 2e-65 UniRef50_B0TYI3 Ribonuclease E n=18 Tax=Francisella RepID=B0TYI3... 252 3e-65 UniRef50_C9R616 Ribonuclease E (RNase E) n=2 Tax=Gammaproteobact... 251 6e-65 UniRef50_P44443 Ribonuclease E n=98 Tax=Gammaproteobacteria RepI... 250 9e-65 UniRef50_A1AW88 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteo... 249 2e-64 UniRef50_Q8DL99 Ribonuclease E n=3 Tax=Chroococcales RepID=Q8DL9... 248 3e-64 UniRef50_C5AD76 Ribonuclease E n=21 Tax=Proteobacteria RepID=C5A... 248 3e-64 UniRef50_A6LNV2 Ribonuclease, Rne/Rng family n=2 Tax=Thermosipho... 248 3e-64 UniRef50_Q7U4C5 Ribonuclease E n=16 Tax=cellular organisms RepID... 247 6e-64 UniRef50_P72656 Ribonuclease E homolog n=10 Tax=Cyanobacteria Re... 246 1e-63 UniRef50_B3QZC2 Ribonuclease, Rne/Rng family n=12 Tax=Chlorobiac... 246 1e-63 UniRef50_A5FJP9 Ribonuclease, Rne/Rng family n=29 Tax=Bacteroide... 246 1e-63 UniRef50_B2V9I2 Ribonuclease, Rne/Rng family n=4 Tax=Hydrogenoth... 244 4e-63 UniRef50_B0SXB4 Ribonuclease, Rne/Rng family n=2 Tax=Alphaproteo... 244 4e-63 UniRef50_B1LBB5 Ribonuclease, Rne/Rng family n=6 Tax=Thermotogac... 239 1e-61 UniRef50_B5ZDP7 Ribonuclease, Rne/Rng family n=12 Tax=Alphaprote... 239 2e-61 UniRef50_Q89AH3 Putative truncated ribonuclease E n=22 Tax=Bacte... 238 4e-61 UniRef50_A2BYM7 S1 RNA binding domain:Ribonuclease E and G n=8 T... 237 7e-61 UniRef50_A5I670 Ribonuclease G n=12 Tax=Clostridium RepID=A5I670... 236 1e-60 UniRef50_C3WSU7 Ribonuclease G n=6 Tax=Fusobacterium RepID=C3WSU... 236 2e-60 UniRef50_C9M9G5 Ribonuclease G n=1 Tax=Jonquetella anthropi E3_3... 236 2e-60 UniRef50_Q2IVP9 RNAse E n=3 Tax=Bradyrhizobiaceae RepID=Q2IVP9_R... 235 3e-60 UniRef50_A6LQR5 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium... 233 9e-60 UniRef50_B6JHD4 Ribonuclease E (RNase E) n=19 Tax=Alphaproteobac... 233 1e-59 UniRef50_C4QQZ4 Ribonuclease G, putative (Fragment) n=1 Tax=Schi... 231 3e-59 UniRef50_UPI00003842F2 COG1530: Ribonucleases G and E n=1 Tax=Ma... 231 4e-59 UniRef50_A3VT88 Ribonuclease E n=1 Tax=Parvularcula bermudensis ... 231 5e-59 UniRef50_D2LHL1 Ribonuclease, Rne/Rng family n=1 Tax=Rhodomicrob... 231 6e-59 UniRef50_A9BIJ0 RNA binding S1 domain protein n=1 Tax=Petrotoga ... 231 7e-59 UniRef50_C8WCX7 Ribonuclease, Rne/Rng family n=3 Tax=Zymomonas m... 230 8e-59 UniRef50_A9RK39 Predicted protein n=1 Tax=Physcomitrella patens ... 229 2e-58 UniRef50_B6INB6 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenu... 229 3e-58 UniRef50_C0R3W8 Ribonuclease, Rne/Rng family protein n=9 Tax=Wol... 228 4e-58 UniRef50_D0JBK5 Ribonuclease G n=2 Tax=Blattabacterium RepID=D0J... 228 5e-58 UniRef50_B8EPB2 Ribonuclease, Rne/Rng family n=1 Tax=Methylocell... 227 7e-58 UniRef50_D1I512 Whole genome shotgun sequence of line PN40024, s... 226 2e-57 UniRef50_A8IFL2 Ribonuclease E and G n=6 Tax=Rhizobiales RepID=A... 225 4e-57 UniRef50_Q0G6Z6 Ribonuclease E and G n=2 Tax=Rhizobiales RepID=Q... 224 4e-57 UniRef50_A0L8J1 Ribonuclease E n=1 Tax=Magnetococcus sp. MC-1 Re... 224 5e-57 UniRef50_D2MIS5 Ribonuclease, Rne/Rng family (Fragment) n=1 Tax=... 224 5e-57 UniRef50_Q0BVH1 Ribonuclease E n=2 Tax=Acetobacteraceae RepID=Q0... 224 5e-57 UniRef50_P51211 Ribonuclease E homolog n=2 Tax=Porphyra RepID=RN... 224 6e-57 UniRef50_B0UJB2 Ribonuclease, Rne/Rng family n=4 Tax=Methylobact... 224 8e-57 UniRef50_Q2G5W8 Ribonuclease E n=8 Tax=cellular organisms RepID=... 223 1e-56 UniRef50_Q3AF57 Ribonuclease, Rne/Rng family n=1 Tax=Carboxydoth... 223 1e-56 UniRef50_C6ADR1 Ribonuclease E n=5 Tax=Rhizobiales RepID=C6ADR1_... 222 3e-56 UniRef50_B8GWM7 Ribonuclease E n=6 Tax=Caulobacteraceae RepID=B8... 222 3e-56 UniRef50_A8GXM7 Ribonuclease E n=15 Tax=cellular organisms RepID... 221 6e-56 UniRef50_Q3J4J9 RNAse E n=6 Tax=Rhodobacteraceae RepID=Q3J4J9_RHOS4 220 1e-55 UniRef50_Q92QJ4 Probable ribonuclease E n=1 Tax=Sinorhizobium me... 220 1e-55 UniRef50_A9KMH0 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium... 219 2e-55 UniRef50_A7HJB9 Ribonuclease, Rne/Rng family n=1 Tax=Fervidobact... 218 6e-55 UniRef50_Q0C4E1 Ribonuclease, Rne/Rng family n=2 Tax=Hyphomonada... 217 6e-55 UniRef50_B6INE9 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenu... 217 1e-54 UniRef50_Q0FAK9 Ribonuclease, Rne/Rng family protein n=1 Tax=Rho... 216 2e-54 UniRef50_Q7CZH1 Ribonuclease E n=7 Tax=Alphaproteobacteria RepID... 215 3e-54 UniRef50_B4RCR6 Ribonuclease, Rne/Rng family protein n=4 Tax=Alp... 214 4e-54 UniRef50_B5ZYQ5 Ribonuclease, Rne/Rng family n=7 Tax=Alphaproteo... 214 4e-54 UniRef50_Q97JL8 Ribonucleases G/E family protein n=1 Tax=Clostri... 214 5e-54 UniRef50_C3WHH5 Ribonuclease G n=4 Tax=Fusobacterium RepID=C3WHH... 213 1e-53 UniRef50_B9JVK9 Ribonuclease E n=40 Tax=Rhizobiales RepID=B9JVK9... 213 1e-53 UniRef50_B9JDP7 Ribonuclease E protein n=3 Tax=Alphaproteobacter... 212 2e-53 UniRef50_C5EUP6 Ribonuclease G n=1 Tax=Clostridiales bacterium 1... 210 9e-53 UniRef50_C0ERY0 Putative uncharacterized protein n=1 Tax=Eubacte... 210 1e-52 UniRef50_Q0SR50 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium... 208 3e-52 UniRef50_C6QC83 Ribonuclease, Rne/Rng family n=1 Tax=Hyphomicrob... 207 8e-52 UniRef50_A8VZD2 Alanine racemase n=1 Tax=Bacillus selenitireduce... 206 1e-51 UniRef50_A8RTZ4 Putative uncharacterized protein n=1 Tax=Clostri... 206 2e-51 UniRef50_C6LLP4 Cytoplasmic axial filament protein n=1 Tax=Bryan... 204 9e-51 UniRef50_Q2GES6 Ribonuclease, Rne/Rng family n=2 Tax=Neoricketts... 202 3e-50 UniRef50_Q9M498 Endoribonuclease E (Fragment) n=6 Tax=Magnolioph... 201 4e-50 UniRef50_C5RGP2 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium... 201 7e-50 UniRef50_Q8GZQ4 Endoribonuclease n=8 Tax=core eudicotyledons Rep... 201 8e-50 UniRef50_Q6B930 Ribonuclease E n=1 Tax=Gracilaria tenuistipitata... 199 2e-49 UniRef50_Q2GKZ9 Ribonuclease, Rne/Rng family n=10 Tax=Anaplasmat... 197 5e-49 UniRef50_A5CEM7 Ribonuclease E n=2 Tax=Orientia tsutsugamushi Re... 196 1e-48 UniRef50_A8LRP5 Ribonuclease n=35 Tax=Rhodobacterales RepID=A8LR... 196 1e-48 UniRef50_UPI0001973AFC ribonuclease n=1 Tax=Clostridium sp. M62/... 196 2e-48 UniRef50_C0D9K4 Putative uncharacterized protein n=2 Tax=Clostri... 194 5e-48 UniRef50_A0Q1T9 Ribonuclease G n=4 Tax=Clostridium RepID=A0Q1T9_... 194 9e-48 UniRef50_D0MD03 Ribonuclease, Rne/Rng family n=1 Tax=Rhodothermu... 192 3e-47 UniRef50_Q1V2D3 Ribonuclease E/G n=5 Tax=Bacteria RepID=Q1V2D3_P... 191 6e-47 UniRef50_O67311 Cytoplasmic axial filament protein n=1 Tax=Aquif... 191 7e-47 UniRef50_A5ZQK1 Putative uncharacterized protein n=2 Tax=Clostri... 190 1e-46 UniRef50_C6J9J6 Putative uncharacterized protein n=1 Tax=Ruminoc... 189 2e-46 UniRef50_B7ANV1 Putative uncharacterized protein n=1 Tax=Bactero... 175 4e-42 UniRef50_B4U851 RNA binding S1 domain protein n=1 Tax=Hydrogenob... 172 2e-41 UniRef50_A6MVU3 Ribonuclease E n=1 Tax=Rhodomonas salina RepID=A... 171 5e-41 UniRef50_UPI0001BC3959 ribonuclease G n=1 Tax=Butyrivibrio cross... 169 3e-40 UniRef50_C7G7S7 Ribonuclease, Rne/Rng family n=2 Tax=Roseburia R... 167 6e-40 UniRef50_C9L8D6 Ribonucleases G and E n=1 Tax=Blautia hansenii D... 166 2e-39 UniRef50_A7VBE5 Putative uncharacterized protein n=3 Tax=cellula... 166 2e-39 >UniRef50_P0A9J2 Ribonuclease G n=523 Tax=cellular organisms RepID=RNG_ECO57 Length = 489 Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/489 (100%), Positives = 489/489 (100%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI Sbjct: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT Sbjct: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA Sbjct: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE Sbjct: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM Sbjct: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV Sbjct: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV Sbjct: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN Sbjct: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 Query: 481 QEQFDVVMM 489 QEQFDVVMM Sbjct: 481 QEQFDVVMM 489 >UniRef50_Q0ABM4 Ribonuclease G n=2 Tax=Proteobacteria RepID=Q0ABM4_ALHEH Length = 492 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 275/492 (55%), Positives = 368/492 (74%), Gaps = 3/492 (0%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E+L+NVTP ETRVA ++ G+LQE+H+ER RRG+VGN+YKGRV RVLPGMQAAF++ Sbjct: 1 MAQEILINVTPRETRVALVENGVLQELHLERARRRGLVGNLYKGRVVRVLPGMQAAFIEA 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQK-QFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 GL++ AFLHASDI G+E + I EL+ +GQ+++VQV+KDP+G+KGARL Sbjct: 61 GLERTAFLHASDIARAEPAPVGDEPNGRPPPLPIDELLTEGQEVVVQVLKDPIGSKGARL 120 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG--GFIIRTAAEGV 177 TT IT+PSRYLV PG+ +GVS R+E +ERERL+ + ++G G I+RTAAE V Sbjct: 121 TTHITIPSRYLVLAPGSRALGVSARVEDPAERERLRAIGESLLADRGDMGIIVRTAAEQV 180 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 E L +D +L R+W + ER +++ +L L R +RD A +E++R+RVDSR Sbjct: 181 AEEALRADFDFLLRLWQSISERAAHASAGQRVHEDLPLTVRAMRDLAGSEVERVRVDSRE 240 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 Y ++ F ++PEM ++E+Y G +P+FDL+++E+EI RAL R+V LKSGG+L+IDQT Sbjct: 241 NYLNVVSFCRRFLPEMAPRVEYYPGERPLFDLYNIEDEILRALNRRVPLKSGGHLVIDQT 300 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EAMTTVD+NTGA+VGHR L++TIF TN+EA QAIARQLRLRNLGGIII+DFIDM E+H+ Sbjct: 301 EAMTTVDVNTGAYVGHRTLEETIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMVEEEHK 360 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R+VL +LE+AL KD KT ++G SALGLVEMTRKRTRES+EH LC CPTC GRG+VK+ Sbjct: 361 RQVLRALEKALQKDHAKTQISGVSALGLVEMTRKRTRESLEHQLCESCPTCGGRGSVKSA 420 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 ETV YEI REI+R ++S R +V A+ V + L +ES SLA++E F+G+ +++Q E Sbjct: 421 ETVSYEIFREILREARQFESRRLVVLAATEVVDLLLEDESTSLAQLEEFIGRPIELQAES 480 Query: 478 LYNQEQFDVVMM 489 LY QEQFDVV+M Sbjct: 481 LYTQEQFDVVLM 492 >UniRef50_C4K6Y9 RNase G (Ribonuclease G) n=2 Tax=Enterobacteriaceae RepID=C4K6Y9_HAMD5 Length = 495 Score = 567 bits (1461), Expect = e-160, Method: Compositional matrix adjust. Identities = 288/496 (58%), Positives = 384/496 (77%), Gaps = 13/496 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREA--RRGIVGNIYKGRVSRVLPGMQAAFV 58 MT+ELL+NVTP ETRVAYID ILQEI+IERE + G+VGNIY+GRV+R+LPGMQAAF+ Sbjct: 1 MTSELLINVTPFETRVAYIDDNILQEIYIERENENKTGLVGNIYQGRVTRILPGMQAAFI 60 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 DI L+KAAFLHASDI+ + E+Q+Q DI+EL+ GQ++MVQV+KDPLG+KGAR Sbjct: 61 DIQLEKAAFLHASDIL-SLKPPENEDQRQ----DIAELIHLGQNVMVQVIKDPLGSKGAR 115 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 LTT ITL SRYLV + V +SQR+E+E ERERLK +V+ YCD++ GFI+RTAAEG+ Sbjct: 116 LTTHITLASRYLV-LTMTPEVAISQRLENEQERERLKNIVSSYCDKKNGFIVRTAAEGMD 174 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFAD-AELDRIRVDSRL 237 E LASDAA+LK +W ++ K + ++ LY EL L +R+LRDF A LDR+R+D + Sbjct: 175 EKALASDAAFLKSLWANIIAGKTQNGSKNVLYTELPLKKRILRDFTVVASLDRVRIDDQQ 234 Query: 238 TYEALLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLI 293 TY +L F+ EYIPEM KLEHY Q +F + VENEIQ L +KV LKSGG LI Sbjct: 235 TYNSLKAFSEEYIPEMLPKLEHYPVEKKNNQTLFSFYHVENEIQSLLNKKVPLKSGGCLI 294 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 I+QTEAMTT+DINT FVG++NL++TIF+TNIEAT+ IARQLRLRNLGGIIIIDFIDM N Sbjct: 295 IEQTEAMTTIDINTAGFVGYKNLEETIFDTNIEATRVIARQLRLRNLGGIIIIDFIDMKN 354 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGT 413 E+H++ VL SL++AL++DRVKT+V FS LGL+E+TRKRT E+IE +LC+ C TC GRG Sbjct: 355 EEHKKNVLSSLKKALNQDRVKTTVGEFSPLGLIEITRKRTTENIEKILCDRCQTCEGRGW 414 Query: 414 VKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKV 473 K+ ETVC+EI R+++++HH+ DS + LVY S V++ L +++ +LA+++ +GK++++ Sbjct: 415 FKSPETVCHEIFRKMIQLHHSSDSQQMLVYVSNRVSDFLLHQKAETLAKIQCLLGKKIQI 474 Query: 474 QIEPLYNQEQFDVVMM 489 +I+PLY Q QF ++ + Sbjct: 475 KIDPLYTQNQFHILTI 490 >UniRef50_A7C082 Ribonuclease G and E n=1 Tax=Beggiatoa sp. PS RepID=A7C082_9GAMM Length = 518 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 263/520 (50%), Positives = 367/520 (70%), Gaps = 38/520 (7%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ E+L+NVT ETRVA I+ GILQE+ IER ++RG+V NIYKGRV RVLPGMQAAFV+I Sbjct: 1 MSEEVLINVTSRETRVAMIENGILQEVIIERTSKRGLVSNIYKGRVCRVLPGMQAAFVEI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL++AAFLH SDI+ +T AG E I EL+ +G+ L+VQV+KDPLGTKGARLT Sbjct: 61 GLERAAFLHLSDII-NTHLQAGIE----PANQIDELLHEGKTLLVQVIKDPLGTKGARLT 115 Query: 121 TDITLPSRYLVFMP-GASHVGVSQRIESESERERLKKVVAEYCD---------------- 163 I++PSRY+V +P + +G+S RIES ER+RLK + ++ Sbjct: 116 AQISIPSRYVVLLPYSPNMIGISTRIESPEERQRLKDIALQHTGMVEQDKLTETKDNNET 175 Query: 164 -------------EQG---GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRY 207 E G GFI+RT AE E L +D +L R+WT + E++ + + Sbjct: 176 VMMHAVSSPKTSVESGKNYGFILRTVAEEAEENFLCADMDFLCRLWTDIQEKETKVKPCS 235 Query: 208 QLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIF 267 +Y +L+L R +RD + + +D+I++DSR T+ ++ F ++IP++ +EHYTG +P+F Sbjct: 236 LVYRDLSLVLRTIRDLSGSSIDKIKIDSRDTHHQVVNFAKKFIPDLVPHIEHYTGERPLF 295 Query: 268 DLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEA 327 DL+ +++EI +ALE KV LKSGGYL+IDQTEAMTT+D+NTG +VG RNL++TIF TN+EA Sbjct: 296 DLYSIDDEINKALEPKVPLKSGGYLVIDQTEAMTTIDVNTGGYVGSRNLEETIFRTNLEA 355 Query: 328 TQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVE 387 QAIARQLRLRNLGGIII+DFIDM +E+H+R+VL +LE+ L +DR K+ ++ S LGLVE Sbjct: 356 AQAIARQLRLRNLGGIIILDFIDMKDEEHQRQVLRTLEKCLERDRTKSYISEISQLGLVE 415 Query: 388 MTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPA 447 MTRKRTRES+EH LC CPTC GRGT+KT ETVCY+I R+IVR +++ +FLV AS Sbjct: 416 MTRKRTRESLEHTLCRTCPTCRGRGTIKTAETVCYDIFRDIVRFTQQFETQKFLVLASQK 475 Query: 448 VAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 + + + +ES+S+ E+E +G ++ Q+E Y+QE +D++ Sbjct: 476 IVDTMLEDESNSVLELEESIGCSIRFQVETSYSQELYDII 515 >UniRef50_A5EVP9 Ribonuclease g n=16 Tax=Gammaproteobacteria RepID=A5EVP9_DICNV Length = 496 Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust. Identities = 235/487 (48%), Positives = 349/487 (71%), Gaps = 8/487 (1%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E+LVN TP ETRVA ++ G+L ++ IERE RRGIVGNIYKG+V RVLPGM+AAF+DIGL+ Sbjct: 17 EILVNHTPYETRVALLEDGLLHDVLIERERRRGIVGNIYKGKVQRVLPGMEAAFIDIGLE 76 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 +A FLH +I TE V G+EQK ISE++ +G+ ++VQV+KDP+GTKGARLTT+I Sbjct: 77 RAGFLHMKNISLPTEMV-GKEQK------ISEILHEGESILVQVLKDPIGTKGARLTTEI 129 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVGEAEL 182 ++ SR+LVF+P + +GVS +I SE++R+ L++++ E+ ++GGFI+RTA E + Sbjct: 130 SISSRFLVFLPKSHDIGVSIKIVSETQRQNLREMMHEFHRGQEGGFIVRTAIETADFWAM 189 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 +D YL RVW ++ + +YG+L L QRVLRD+ ++ ++ VD Y A+ Sbjct: 190 RADMQYLHRVWDSILTTYRESYASTLIYGDLPLYQRVLRDYISPQVKQVIVDDPEAYRAM 249 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 +F ++ EM ++ Y G + +FD + VE EI+RAL+R+V+LKSGGYL+IDQTEAMTT Sbjct: 250 AQFAGNFLIEMADRITLYDGDRTLFDRYGVEEEIERALKRRVDLKSGGYLMIDQTEAMTT 309 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+NTG FVG + +DTIF TN+EA +AIARQLR+RNLGGII++DFIDM + +H++ V+ Sbjct: 310 IDVNTGGFVGKSSQEDTIFKTNLEAAKAIARQLRIRNLGGIIMLDFIDMTSTEHQQSVVD 369 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +L AL+ D+ K +++ S LG++EMTRKRTRES++ V+C CP C GRG VKT ET+ Y Sbjct: 370 ALLNALAGDKSKYTISPISPLGIIEMTRKRTRESLKQVMCETCPRCSGRGYVKTTETIVY 429 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 E+ R+++R Y V +P E ++ EES + ++++I + +++Q + Y+Q+ Sbjct: 430 ELFRDLMREAREYAPKGMTVIGNPDFIEFIREEESMAFSDLQILLKMPIRLQSDGAYSQD 489 Query: 483 QFDVVMM 489 ++D+VMM Sbjct: 490 KYDIVMM 496 >UniRef50_D0LZK2 Ribonuclease, Rne/Rng family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZK2_HALO1 Length = 543 Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/506 (44%), Positives = 326/506 (64%), Gaps = 23/506 (4%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG--L 62 L+VN ETRV + G L E +E + RGIVGNIY+GRVSRVLPGMQAAFVD+G + Sbjct: 6 LVVNAEGPETRVGVVHEGTLSEYFVESKRDRGIVGNIYRGRVSRVLPGMQAAFVDLGPTV 65 Query: 63 DKAAFLHASDIM-------------PHTEC--------VAGEEQKQFTVRDISELVRQGQ 101 ++A FL+ +DI+ P ++ +A ++ R I +L++ Q Sbjct: 66 ERAGFLYVADILGAADERKLFADEDPDSDDAPEGTAARLARSRKRANANRKIEDLLKADQ 125 Query: 102 DLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY 161 +++VQVVK+P+G KGARLT ++LP RY VFMP VGVS+RI SE+ER RL+K+V Sbjct: 126 EVLVQVVKEPIGLKGARLTGYLSLPGRYNVFMPAVQQVGVSRRISSEAERRRLRKIVTSV 185 Query: 162 CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 221 + GGFI+RTAAEGV + E+ D YL R+W+++ R++ + +Y +L L R +R Sbjct: 186 GHKSGGFIVRTAAEGVVDQEIRDDVDYLLRLWSEIQRRERSMKGPGLIYADLDLVLRTIR 245 Query: 222 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 281 D A+ I +D Y+ +FT ++P +++ Y GRQPIFD + VE E++ AL Sbjct: 246 DLLRADTKEIVIDDEEQYDRARKFTMAFLPPAVDRIKQYRGRQPIFDHYGVEAELRTALG 305 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLG 341 R+VELKSGG L+IDQ EA+T +D+NTG+FVG R+L++T+ NIEA + +ARQLRLRN+G Sbjct: 306 RRVELKSGGSLVIDQGEALTAIDVNTGSFVGKRDLEETVTKNNIEACREVARQLRLRNIG 365 Query: 342 GIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 GII+IDF+DM+ E++R++V L QAL+ DR + ++ S LGLVEMTRKRTRES+ +L Sbjct: 366 GIIVIDFVDMDKENNRKKVWDILNQALASDRSRCNLTKISELGLVEMTRKRTRESLNQLL 425 Query: 402 CNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLA 461 CPTC G G VK+ TV +E++RE+ R+ ++D V +P VA+ L E L Sbjct: 426 TEACPTCSGSGVVKSTTTVAHEVLREVRRLGSHAEADSIDVECAPVVADLLDKYERGYLD 485 Query: 462 EVEIFVGKQVKVQIEPLYNQEQFDVV 487 E+E K+V +Q Y +Q+ V+ Sbjct: 486 ELEKKFQKKVVIQSNGGYRPDQYQVM 511 >UniRef50_C8W5Q7 Ribonuclease, Rne/Rng family n=11 Tax=Bacteria RepID=C8W5Q7_DESAS Length = 564 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 224/496 (45%), Positives = 314/496 (63%), Gaps = 13/496 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E++VNV ETRVA ++ + EI+IER + + GNI+KG+V VLPGMQAAFVDI Sbjct: 1 MLKEIVVNVGEEETRVAVLEDKVTVEIYIERAINQRLEGNIFKGKVENVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GLDK AFL+ D +P +I ++++QGQDL+VQ+VK+P+GTKG R+T Sbjct: 61 GLDKNAFLYVEDALPSRNPEENRNSLDLCA-NIGDVLKQGQDLVVQIVKEPIGTKGPRIT 119 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T ITLP RYLV MP ++G+S+RI E ERERLK++ A G I+RT AEGV E Sbjct: 120 THITLPGRYLVLMPTVDYIGISRRIADEQERERLKELAARVKPRDMGLIVRTVAEGVSEE 179 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 ELA D L ++W K++ R L+ +L L R+LRD ++DR+ +DSR YE Sbjct: 180 ELAQDVNVLAKLWRKIINRSNHGPVPNLLHRDLELVHRILRDIFTEDVDRLIIDSRYEYE 239 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +LE P++ K+ R+ +F+ + +E E+++A++RKV LK GGYL+IDQ EA+ Sbjct: 240 RVLELLDIIDPQLKIKV-SVDERENLFEEYGIEMELEKAVKRKVWLKCGGYLVIDQAEAL 298 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG FVG NL+DT+ TN++A IARQLRLRN+GGIII+DFIDM ++HR++V Sbjct: 299 TAIDVNTGKFVGSTNLEDTVLRTNLDAALEIARQLRLRNIGGIIIVDFIDMLEDEHRQKV 358 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L LE+ + KD+ KT++ G + LGLVEMTRK+ R S+ +L CP C GRG V + ETV Sbjct: 359 LEVLEKEIKKDKTKTNLLGITQLGLVEMTRKKVRPSLSEMLQKPCPYCEGRGKVLSEETV 418 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQV--------- 471 EI ++ +D LV A+P VA L G +L ++E GK + Sbjct: 419 GIYFKNEIYQLSRQTPADTILVEANPLVAARLIGSGGSNLRDLENKTGKNLYIRGSANYH 478 Query: 472 --KVQIEPLYNQEQFD 485 V+I PLYN++ + Sbjct: 479 IESVKIRPLYNKDDIE 494 >UniRef50_A6GBN9 Ribonuclease G n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBN9_9DELT Length = 507 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 233/491 (47%), Positives = 314/491 (63%), Gaps = 9/491 (1%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 +++N ETRVA I+ GIL E+ IERE RGIVGN+YKG++ RVLPGMQAAFVDIG DK Sbjct: 6 IVINADGPETRVALIENGILTELFIERERERGIVGNVYKGKILRVLPGMQAAFVDIGEDK 65 Query: 65 AAFLHASDIMPHTEC-------VAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGA 117 AAFL+A DI G ++ V +I++LV GQ+++VQVVKDP+ TKGA Sbjct: 66 AAFLYAGDIASQKPGEKVDKVDKNGVPKRGGKVSNIADLVHPGQEILVQVVKDPISTKGA 125 Query: 118 RLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGV 177 R+TT I+LP R +VFMP SHVG+S+RI SE +R RL+++V E + GFI+RT A Sbjct: 126 RITTYISLPGRNVVFMPTVSHVGISRRINSERQRRRLRRLVDEMRPKGSGFIVRTVARHA 185 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 A++ + YL R+W + ++ + LY +L L RV+RD + R+ VD R Sbjct: 186 SSAQVRAGMDYLIRLWANIKANERLHRAPVLLYRDLDLMLRVVRDNLSPDYARVIVDDRA 245 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 YE L F ++PE ++E ++GRQ IFD + +E EI RALERKVELKSGG L+ DQ Sbjct: 246 AYERLKRFADAFLPEYADRIELFSGRQGIFDSYGIELEIDRALERKVELKSGGSLVFDQG 305 Query: 298 EAMTTVDINTGAFVGHRN--LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 EA+T +D+NTG FVG + L+ TI TN+EA IA QLRLRN+GG+IIIDFIDM+ E Sbjct: 306 EALTAIDVNTGKFVGSKGKTLEQTITQTNLEAADEIAEQLRLRNVGGLIIIDFIDMDRES 365 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 +RR+V L+ AL +DR K + S +GLVEM+RKRTRES+E L C C G+G K Sbjct: 366 NRRKVYRRLQDALRRDRAKAHITKISEMGLVEMSRKRTRESLERRLAITCEVCGGKGYHK 425 Query: 416 TVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQI 475 + T+CYEI+R+I R + V A P VAE + G E +L V K + VQ Sbjct: 426 SPSTICYEILRQIRREGEHLAGEVISVTAHPDVAELMNGAERSALDHAVKRVHKAIDVQG 485 Query: 476 EPLYNQEQFDV 486 ++ E+F++ Sbjct: 486 RKGFHPEKFEI 496 >UniRef50_A0LIP4 RNAse G n=22 Tax=Bacteria RepID=A0LIP4_SYNFM Length = 530 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 235/516 (45%), Positives = 332/516 (64%), Gaps = 30/516 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+AEL++N + ETRVA ++ G + E+HIER + RGI GNIYKGRV +VLPGMQAAFVDI Sbjct: 1 MSAELIINGSAFETRVALVENGQVAELHIERSSDRGIAGNIYKGRVVKVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIM-----------------PHTECVAG-------------EEQKQFTV 90 L+KAAFL+ SDI P E V + Q+ ++ Sbjct: 61 DLEKAAFLYVSDIHHPMGDVEQLLLSTCEVEPDVEKVDSAREPGAPEFQDVLDLQRYYSS 120 Query: 91 RDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESE 150 I E +++GQ+++VQV K+P+G KGAR+TT ITLP R+LVFMP HVGVS+RIE+E E Sbjct: 121 VPIEERLQEGQEILVQVAKEPIGHKGARITTHITLPGRHLVFMPTMDHVGVSRRIENEVE 180 Query: 151 RERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 R+RL++++ E GFI+RTAAEG +L + +L +VW + R + +Y Sbjct: 181 RKRLREIMCEIKPSHCGFIVRTAAEGAEPEKLQVEVDFLVKVWQNIQRRFESASVPSLVY 240 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 EL + R +RD E+DR+ +DSR ++ + F ++P + S +E Y G +PIFD + Sbjct: 241 QELDITLRAVRDLFTKEVDRLVIDSRSEHKKITNFIETFLPALQSSIELYEGDEPIFDAY 300 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 +E E+QRAL +K+ LKSGGY++I+ TEA+T VD+NTG +VG RNL++TI TN+EA + Sbjct: 301 GIEMEVQRALSKKIWLKSGGYIVIEMTEALTAVDVNTGRYVGKRNLEETILKTNLEAVKE 360 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 IA QLRLRN+GGIIIIDFIDM E +R +V ++L+ A+ KD+ KT++ S LGL+EMTR Sbjct: 361 IAYQLRLRNIGGIIIIDFIDMEKESNREKVCNALKDAMHKDKSKTNILHMSELGLIEMTR 420 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE 450 KRTRESI VLC C C G G +K+ +TVCYEI+RE+ R +V A P VA Sbjct: 421 KRTRESIGQVLCEPCFYCEGEGYLKSRQTVCYEILRELEREKRDLYGQNIMVLAHPEVAA 480 Query: 451 ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 E+ L VE + ++ V+ +P ++ EQ+++ Sbjct: 481 RFCDEDRGPLERVEETLHARIMVKGDPGFHLEQYEI 516 >UniRef50_B0TWF6 Ribonuclease G n=17 Tax=Francisella RepID=B0TWF6_FRAP2 Length = 509 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 216/496 (43%), Positives = 332/496 (66%), Gaps = 8/496 (1%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 + E+ +N+ E R+A + IL+EI IER+ ++ IVGNIYKG++ RVLPGMQAAFVDI Sbjct: 14 LNTEIFLNINKYEQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDI 73 Query: 61 GLDKAAFLHASDIMP----HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKG 116 GL+KA FLH S+++P E + + DI++ +R+GQ+++VQVVK+ +G KG Sbjct: 74 GLEKAGFLHLSEVIPLERDDEESDENFKLNKLNTEDINKWLREGQEVLVQVVKESIGNKG 133 Query: 117 ARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG--GFIIRTAA 174 +LT+ +++ SR+LVF+P H+G+S +I E E++RL + + + G+I+RTAA Sbjct: 134 VKLTSHLSVSSRFLVFLPDLDHIGISLKISKEEEKQRLLDSIKKITQSENPRGYILRTAA 193 Query: 175 EGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVD 234 EG EL +D +L +W +++ +Y + +L + + FA+ D+I VD Sbjct: 194 EGASYEELENDIKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNPDKIHVD 253 Query: 235 SRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLII 294 +Y+ + +F +YIP + K+E Y + IF+ +D++ EI +AL++ V LKSGGYL+I Sbjct: 254 DIDSYKEICQFADKYIPGLRDKIELYQ-KHNIFEEYDIDVEINKALDKTVYLKSGGYLVI 312 Query: 295 DQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 +QTEAM T+DINTG F+G +NL++TIF TN+EAT+ IARQLRLRNLGGIIIIDFIDM +E Sbjct: 313 EQTEAMITIDINTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDE 372 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 H+ +VL +L++ L D+ KTSV+ S LGLVEMTRKR ES+ LC C C+G+G+V Sbjct: 373 SHKNQVLEALKKELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCNGKGSV 432 Query: 415 KTVETVCYEIMREIVRVHHAY-DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKV 473 KT++T+CY+I REI Y + + FL+ +S + + ++ EES LAE+E+ + K + + Sbjct: 433 KTLQTICYDIFREIKSESKNYPNYNNFLLMSSKKIIDYIEREESIWLAELELEIDKNIYL 492 Query: 474 QIEPLYNQEQFDVVMM 489 + E + Q+D++ + Sbjct: 493 KAESNHIYNQYDIIPL 508 >UniRef50_A5WCI8 RNAse G n=4 Tax=Moraxellaceae RepID=A5WCI8_PSYWF Length = 613 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 198/400 (49%), Positives = 280/400 (70%), Gaps = 8/400 (2%) Query: 97 VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKK 156 + +GQ ++VQV KD LGTKGARLTT+I+LPSRYLV++P + H+G+SQRI++E ER RLK Sbjct: 213 LHEGQKILVQVTKDQLGTKGARLTTNISLPSRYLVYLPSSEHIGISQRIDNEEERHRLKT 272 Query: 157 ---VVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRP----QTRYQL 209 + + + GG I RTAAE V A+L D YL ++W + RK+ Q+ + Sbjct: 273 ELGALMQTVNLTGGLIARTAAERVPVAKLEEDIYYLVQLWRTIQARKEASAGSGQSAVLI 332 Query: 210 YGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDL 269 Y EL+L R +RD + +++ VD Y + +F E++P + ++ Y+G QP+FD+ Sbjct: 333 YQELSLPLRSIRDLVHPDTEKVIVDHEGMYNEVRQFAKEFVPFIYPRILPYSGEQPLFDV 392 Query: 270 FDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQ 329 VE +++ AL+R+V+LKSGGYLIIDQTEAMTT+D+NTG+FVG R+L+DT++ TN+EAT Sbjct: 393 HRVEEDLRDALKRRVDLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSLEDTVYKTNLEATH 452 Query: 330 AIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMT 389 AIARQLRLRNLGGIII+DFIDM + H+ VL +L+ LS+D KT + S LGLVEMT Sbjct: 453 AIARQLRLRNLGGIIILDFIDMLEQQHKDDVLENLQYQLSQDYAKTKITQVSELGLVEMT 512 Query: 390 RKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDS-DRFLVYASPAV 448 RKRTRES+E LC C TC G+G +KT ETVC+EI REI+R Y+S +F V A +V Sbjct: 513 RKRTRESLEQQLCEPCKTCEGKGFIKTAETVCFEIFREIMRCARTYNSPKKFTVVAHASV 572 Query: 449 AEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 + L E+ ++A++E +G+ + ++E LY QEQ+D+V+ Sbjct: 573 IDLLLSSEADTVADLEYLLGRVITFEVENLYTQEQYDIVL 612 Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 43/73 (58%), Positives = 58/73 (79%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ ELL+NV+P E+RVA +D G++ E++IER + G+VGNIY G V RVLPGMQAAFV+I Sbjct: 1 MSEELLINVSPMESRVAVLDNGVVSEVYIERHNKLGLVGNIYLGTVVRVLPGMQAAFVEI 60 Query: 61 GLDKAAFLHASDI 73 G + AFLH +D+ Sbjct: 61 GQSRTAFLHVNDM 73 >UniRef50_B8FM65 Ribonuclease, Rne/Rng family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FM65_DESAA Length = 529 Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust. Identities = 209/518 (40%), Positives = 313/518 (60%), Gaps = 31/518 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +L++N ETRVA ++ G L E++IER IV NIYKGRV RVLPGMQAAFVDI Sbjct: 1 MEKKLIINDAGFETRVALVEDGALAELYIERTGESDIVSNIYKGRVMRVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIM---PHTEC----VAGEEQKQ------------------------FT 89 GLD+AAF++ D++ P E + +E+ Q Sbjct: 61 GLDQAAFIYVDDVVMDFPSDETGSPLIHEDEEDQEVILLDAEDDDDEIEEAARIIRPPRI 120 Query: 90 VRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESES 149 I +++R+GQ++MVQV K P+G KGAR+T+ IT+P R+LV MP +H+GVS+RI Sbjct: 121 RPSIEDMIREGQEIMVQVAKSPIGKKGARVTSRITIPGRFLVLMPTTNHIGVSRRITDSG 180 Query: 150 ERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQL 209 ER RLK+ + E E G+I+RT EG+G +L + +L RVW +V+ R + L Sbjct: 181 ERNRLKEQLMEARVEPFGYIVRTVCEGIGPEKLTHEVEFLTRVWKRVVHRYWQCSAPSLL 240 Query: 210 YGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDL 269 + EL+ + R +RD E+DR+ +DS Y + +F +P + +++Y R+PIFD Sbjct: 241 HQELSASLRSVRDLFTKEVDRLVIDSERGYREIQDFLEPNMPGLRDAVQYYDRREPIFDA 300 Query: 270 FDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQ 329 + +E +I R +KV LKSGGY++I++TEA+ ++D+NTG +VG +L +TI TN+EA + Sbjct: 301 YQLEGDISRLGRKKVWLKSGGYIVIEETEALVSIDVNTGRYVGKGDLSETILKTNLEALK 360 Query: 330 AIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMT 389 IA QLRLR++GGII+IDFIDM + R +V L + L KDR T+V S +GL++MT Sbjct: 361 EIAYQLRLRDIGGIIVIDFIDMEKLEDRDKVYQVLVETLKKDRSTTNVLPMSEMGLIQMT 420 Query: 390 RKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVA 449 RKRTRE+I L C C G G V + +++C+ I REI+R + R V A P +A Sbjct: 421 RKRTRENINRQLSEPCAYCEGEGIVLSKKSICHNIYREILRQSYDIQGSRISVKAHPEIA 480 Query: 450 EALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 L EE+ ++ +E + + +Q +P + E+F+++ Sbjct: 481 RFLLEEENITVLSLEQRIETPILIQADPALHIERFEIM 518 >UniRef50_C9KMZ9 Ribonuclease G n=2 Tax=Veillonellaceae RepID=C9KMZ9_9FIRM Length = 480 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/485 (40%), Positives = 299/485 (61%), Gaps = 13/485 (2%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 ++VN+ P ET +A ++ G LQ + +ER + +VGNIYKGRV VLPGMQAAFVDIG K Sbjct: 4 IIVNMVPEETCMALLEDGELQAVEMERSSHSHLVGNIYKGRVQNVLPGMQAAFVDIGTGK 63 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 AFL+ D +PH + + + + GQ L +Q+VKD +GTKG R T I+ Sbjct: 64 NAFLYIGDGLPHETIESMPQNARIHI---------GQSLPIQIVKDAIGTKGPRATMHIS 114 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 LP R +V MP A+++G+S+RIE E ER RL + C + G IIRT A G E LA+ Sbjct: 115 LPGRNVVLMPTAAYIGMSRRIEDEGERARLHAIAERICPKGMGLIIRTVAAGQSEQSLAA 174 Query: 185 DAAYLKRVWTKVMER-KKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL 243 D YL R+W ++ R K R + LY + L R++RD A++D + +D+ Y+ + Sbjct: 175 DVRYLVRLWESILARYKMRTKGSALLYRDADLIIRLVRDRFTADIDELVIDNEEAYQRVR 234 Query: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 PE+ ++ Y + PIF + +E EI++ R+VELKSGG+L+ID+TEA+T + Sbjct: 235 SLVEANSPELVDRIRFYEAKTPIFKAYHIEEEIEKLGAREVELKSGGFLVIDKTEALTVI 294 Query: 304 DINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 D+NTG +VG NL DT++ TN+EA I +Q+RLR++GGIII+DFIDM E + +L Sbjct: 295 DVNTGKYVGKTNLGDTVYQTNLEAAAEILKQIRLRDIGGIIIVDFIDMEKESQKEELLTY 354 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYE 423 + + + DR KT++ ++LGLVE+TRK+TR++I+ ++ +ECP CHGRG +++ ETV Sbjct: 355 MREQVKHDRTKTNIVDITSLGLVEITRKKTRQNIDSIVYSECPICHGRGRIESPETVAIR 414 Query: 424 IMREIVRVHH-AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 I R+I R+ ++ + + + VAE L+ + + + G +KV ++P + E Sbjct: 415 ISRDIRRMERKSHAREGYEIEVHETVAEELRA--NQLMMNLAAEFGTDIKVTVKPGMHPE 472 Query: 483 QFDVV 487 + ++ Sbjct: 473 NYTIL 477 >UniRef50_A3EQR7 Ribonucleases G and E n=3 Tax=Leptospirillum RepID=A3EQR7_9BACT Length = 527 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 208/524 (39%), Positives = 322/524 (61%), Gaps = 40/524 (7%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E+L++V+ ET+VA ++ L E ER+ G+VGNIYKGRV++VLPGMQAAFVD+GL+ Sbjct: 2 EILIHVSHEETKVALVENRQLAEFFFERKREAGVVGNIYKGRVNKVLPGMQAAFVDVGLE 61 Query: 64 KAAFLHASDI-----------MPHTECVAG--------------------------EEQK 86 KAAFL+ DI MP + A E + Sbjct: 62 KAAFLYVDDIYVEGSDILPGEMPQDDQTAPPPPVEGESPAEGSLTEDPAAGPVSRPEPPR 121 Query: 87 QFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIE 146 + + I E++ +GQ++++Q+ K+P+ TKG R TT I+LP RYLV+MP +HVGVS+RI Sbjct: 122 KVPRKPIEEILTEGQEILIQMTKEPISTKGPRATTYISLPGRYLVYMPQVNHVGVSRRIT 181 Query: 147 SESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTR 206 +E ER+RLK++V +GG+IIRT AEG+ E+E SD +L+ +W + R + + Sbjct: 182 NEEERQRLKEMVNALKGGKGGYIIRTVAEGMSESEARSDIIFLELLWQDIRSRAETMKAP 241 Query: 207 YQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPI 266 + +L + R +RD+ E++ + +D Y+ +++F Y+P+ S++ + G P+ Sbjct: 242 SLVREDLDVVFRTIRDYLTHEVETLYIDDVKEYKRVMDFIGTYMPDYASRVRLWEGPTPL 301 Query: 267 FDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIE 326 F +D+E ++ +ALE+KV LKSGGYL+ID+ EA+T +D+NTG FVG + + TI TN+E Sbjct: 302 FASYDIERQLSKALEKKVWLKSGGYLVIDRAEALTVIDVNTGRFVGENDPESTILQTNLE 361 Query: 327 ATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLV 386 A IARQLRLRN+GGIIIIDFIDM E +R +V L+++L+ D+ +T+ S LGLV Sbjct: 362 AVTEIARQLRLRNIGGIIIIDFIDMEKEKNREKVFQGLQESLAHDKARTNALKISDLGLV 421 Query: 387 EMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSD---RFLVY 443 EM+RKR RE + H+L C C G+G K++ T+ YEI+ E+ V + + +++ Sbjct: 422 EMSRKRVREDLVHLLGETCAYCDGKGYTKSLRTIAYEILEELRSVPSGGQNPKEKKAILF 481 Query: 444 ASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 P + L+ EE L VE + +Q+ ++ +PL + E+F +V Sbjct: 482 VHPEIQTILQEEERDFLQAVERKIRRQIIIKPDPLSHIEEFSIV 525 >UniRef50_A1HNZ2 Ribonuclease, Rne/Rng family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNZ2_9FIRM Length = 473 Score = 360 bits (923), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 194/491 (39%), Positives = 299/491 (60%), Gaps = 26/491 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++ ++ P E+R+A ++ G L E +ER A +VGNIYKG+V VLPGMQAAF+DI Sbjct: 1 MGKTIIASIMPEESRMALVEDGELVEYVLERSATGHLVGNIYKGKVKNVLPGMQAAFIDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK A+L+ H + AG + TV GQD+++Q+VKD G+KG R T Sbjct: 61 GGDKNAYLYVG----HADANAG----RLTV---------GQDILIQIVKDASGSKGPRTT 103 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T + LP RY V P + GVS+RIE ++ER+RL+++ + + G I+RTAA G E Sbjct: 104 TGLMLPGRYAVLAPYSDGTGVSRRIEDDAERKRLRQLADKVKPDGVGMIVRTAAAGCSET 163 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 ELA D YL +W + R KR LY ++ LA R++RD+ D ++ + +D+R Y Sbjct: 164 ELARDVEYLHNLWAALAARAKRSPAPALLYRDVDLAIRIVRDYLDDDVTEVVIDNRDAYG 223 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + P +K++ Y + IF + + ++ R L+R+VEL GG+L+IDQTEA+ Sbjct: 224 RVCDLLQHLAPAALAKVKFYQYPEDIFVHYGIAADLNRLLKREVELACGGFLVIDQTEAL 283 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG FVG +L DT+F N+EA IARQLRLR++GGIII+DFIDM +H++ V Sbjct: 284 TVIDVNTGRFVGDTSLSDTVFRVNMEAAAEIARQLRLRDIGGIIIVDFIDMAKAEHKQAV 343 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L L + + +DR ++ + G ++LGLVE+TRK+ R+ + ++ +ECP C GRG +++ ETV Sbjct: 344 LAFLAEKMRRDRTRSKILGLTSLGLVEITRKKGRQDLNSLMYSECPCCAGRGRIQSPETV 403 Query: 421 CYEIMREIVRVHHAYD--SDRFLVYASPAVAEAL--KGEESHSLAEVEIFVGKQVKVQIE 476 I R + R A + R ++ A P V E L +GE LA +E + +++ ++ Sbjct: 404 AINIRRHL-RWAAAQRKLASRLVIQAHPQVVEILSRQGE----LARLERELARKLTLESA 458 Query: 477 PLYNQEQFDVV 487 P + E + ++ Sbjct: 459 PAMHPECYSIL 469 >UniRef50_A4XJ17 Ribonuclease G n=7 Tax=Clostridia RepID=A4XJ17_CALS8 Length = 571 Score = 358 bits (918), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 193/464 (41%), Positives = 299/464 (64%), Gaps = 4/464 (0%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +E++V+V+ ETRVA ++ L EI+IER ++ IVGNIYKG V +LPGM AAFV+I Sbjct: 1 MQSEIIVDVSFGETRVAVLEDKELVEIYIERNDQQSIVGNIYKGVVENILPGMDAAFVNI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK AFL+ DI G+ + + ++ +R GQ+++VQV+K+ KG R+T Sbjct: 61 GQDKNAFLYLGDI---NRLEFGDTDEYYEIKTNPLALRCGQEIVVQVIKEAYDQKGPRVT 117 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T+ITLP RYLV +P ++G+S+RIE E ER RLK++ + + G I+RTAAEG E Sbjct: 118 TNITLPGRYLVLLPNTDYIGISKRIEFEEERTRLKEIACKIKPDGMGLIVRTAAEGKSEE 177 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L ++ +L+ +W K+ ++ K LY + L + +RD ++DR ++ R Y Sbjct: 178 VLRNELEFLRNLWQKIRQKSKE-SAPVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYN 236 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 ++EF S Y P + SK+E++ IF+ F +E ++ +AL +++ LKSGGY++ID+TEA+ Sbjct: 237 KIIEFLSTYAPSLKSKVEYFNLATNIFEYFQIEQKLSKALSKRIWLKSGGYIVIDETEAL 296 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG FVG ++ +TI TN+EA IARQ+RLR++GGIIIIDFIDM N +H++ V Sbjct: 297 TVIDVNTGKFVGKNDVSETILKTNLEAAVEIARQIRLRDIGGIIIIDFIDMKNPEHQKLV 356 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L +L++AL +D+ KT V G + LGLVEMTRK+ R+ + ++ + CP C G G + + ETV Sbjct: 357 LDALKEALKRDKTKTVVVGITPLGLVEMTRKKVRQRLSCIMQSCCPYCEGSGKILSPETV 416 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVE 464 ++++EI ++F V + V E L+ E + E++ Sbjct: 417 GLKVLKEIEWYFKNRVEEKFFVEINTKVCEVLRKGEVDRIKELQ 460 >UniRef50_B2KEH9 Ribonuclease, Rne/Rng family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEH9_ELUMP Length = 483 Score = 352 bits (904), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 186/491 (37%), Positives = 296/491 (60%), Gaps = 19/491 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 + E+L N + ETRVA ++ G L E+ ER IVGNIYK V VLPG+ +AFV+I Sbjct: 8 LKVEVLANTSFEETRVAIVENGRLAELMWERRGAVNIVGNIYKATVENVLPGISSAFVNI 67 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G +K A+L+ SD++ G+E+K +I +++++GQ++MVQVVKD +GTKG ++T Sbjct: 68 GYEKNAYLYISDVL-------GDEKK-----NIEKVIKKGQEIMVQVVKDAIGTKGMKIT 115 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE--QG-GFIIRTAAEGV 177 D+TLP R+LV P S VGVS+ IE ER +L +V E ++ G G I+RT AE Sbjct: 116 MDVTLPGRFLVLTPHQSFVGVSKNIEDNQERHKLNDMVQELAEKYLHGMGCIVRTEAEEA 175 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 + EL + YL R W ++ + + + L+ ++ +V RD ++ +D++ Sbjct: 176 TKDELEREVKYLYRQWQSILNKFETLPSPSILHEDMDAVLQVSRDILSENIEVYYLDNKK 235 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 YE +L+F S+ PE+ K++ Y G+ PIF+ F++E+EI + K+ L +GG +II + Sbjct: 236 DYENVLDFVSKNSPELKDKIKLYKGKTPIFEAFNIESEIDNLRKTKISLPNGGSIIIQEA 295 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 E++ +D+NTG F G ++ ++T+ TNIEA Q +A QLRLRN+GGI++IDFIDM +R Sbjct: 296 ESLCAIDVNTGKFTGSKSQEETVTQTNIEAAQEVAHQLRLRNIGGIVVIDFIDMKKASNR 355 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 RV+ +L A+ +DR K + + LGLVEMTR+R +ES +L ECP CHG G V + Sbjct: 356 HRVVEALADAVHRDRAKIRILPITRLGLVEMTRERKKESTGSLLTEECPQCHGSGRVLSA 415 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 E++ +I REI + + P +A+ +K H + +E + + +K+Q + Sbjct: 416 ESMRIKIQREIYDLTQGRPGGNLRIVLHPELADQIK----HQQSVIEQNIHRSMKIQSDA 471 Query: 478 LYNQEQFDVVM 488 + E + +V+ Sbjct: 472 QLSWEDYKIVL 482 >UniRef50_C1A932 Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A932_GEMAT Length = 520 Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 188/506 (37%), Positives = 301/506 (59%), Gaps = 18/506 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E+LVN TP ETRVA I+ G L E+ ++R R +VG++Y G+V VLPG+QAAFV+I Sbjct: 1 MKREILVNATPRETRVAIIEDGQLVELLVDRPDARRMVGDVYLGKVEAVLPGIQAAFVNI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFT-----------------VRDISELVRQGQDL 103 G +K+AFLHA+D++ V+ ++ VR I +L+++GQ++ Sbjct: 61 GTEKSAFLHAADVVVEDAQVSDDDDDDEDESGEESGGGGGRRGRREVRPIQDLLKRGQEI 120 Query: 104 MVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC- 162 +VQ+ K+P+ TKG R+T ++L R+LV+MP AS VGVS++I+ SER+RL+ +V E Sbjct: 121 LVQITKEPISTKGPRVTAQVSLAGRFLVYMPFASKVGVSRKIDERSERQRLRAMVGEMLP 180 Query: 163 DEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRD 222 D+ GG I+RT +E + + L W ++ + + + ++ E + + ++RD Sbjct: 181 DDAGGVIVRTVSEDATKETFERELQTLINNWKRIKRKTQFTRAPSLVHRETNVTRGLVRD 240 Query: 223 FADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALER 282 A+++R++VDS+ Y + E+ PE+ +++ Y P+FD +E EI+ +R Sbjct: 241 LFSAKVERVQVDSKQVYNEITEYLQGIAPELVERVKLYEENVPLFDKEGIETEIRDLFKR 300 Query: 283 KVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGG 342 + +L SGGYLI + TEA+ ++D+N+G + G R+ + TI TN EA + IARQLRLR++GG Sbjct: 301 RCDLPSGGYLIFEPTEALVSIDVNSGRYTGKRDPEKTILKTNTEAAREIARQLRLRDVGG 360 Query: 343 IIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLC 402 II+ DFIDM + +R +VLH L L +DR +T S LGLVEMTR+R R+S H + Sbjct: 361 IIVCDFIDMETQSNRDKVLHELRTHLGRDRARTKAFAVSDLGLVEMTRQRVRQSHWHSMT 420 Query: 403 NECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAE 462 CPTC G G V T ET+ R + R+ + ++ P VA + +E + Sbjct: 421 EGCPTCSGTGRVFTPETIVRRTERAVRRMAAEGRKEPVVLRLHPEVALHVLEQEHDFMKR 480 Query: 463 VEIFVGKQVKVQIEPLYNQEQFDVVM 488 +E G ++++ +PL ++ +VM Sbjct: 481 LEKMAGFTLELRDDPLLKPDEIKLVM 506 >UniRef50_B8CXZ3 Ribonuclease, Rne/Rng family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXZ3_HALOH Length = 489 Score = 352 bits (902), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 190/483 (39%), Positives = 299/483 (61%), Gaps = 13/483 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++++N E R A + +L++I IE ++ + IVGN+Y+ RV VLPGMQAAFVDI Sbjct: 1 MVNQIIINSGIKEKRAAILMDNVLEDIVIELDSYKKIVGNVYRARVIDVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRD-----ISELVRQGQDLMVQVVKDPLGTK 115 G DK AFLH SDI P ++KQ ++ I +++ GQ+LMVQVVK+P+ K Sbjct: 61 GYDKNAFLHVSDIYPLL------DEKQLKLKKEGKLGIQHVLQPGQELMVQVVKEPIYEK 114 Query: 116 GARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAE 175 GA++T I+LP RYLV +PG +S++I+ ER+RLKK+V + D G IIRT + Sbjct: 115 GAKVTCKISLPGRYLVLLPGEYRTAISRKIKDFDERDRLKKIVGKLKDPDMGLIIRTNSR 174 Query: 176 GVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDS 235 L D +YLKR WT++ E + +Y +L + ++RD+ + ++D++ +D Sbjct: 175 YKKADLLELDYSYLKRTWTQIKENYNNSKAPDLIYEHASLLKTIVRDYLNKDVDKVLIDD 234 Query: 236 RLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIID 295 Y LLE + + P++ +++ Y + PIF ++ +E E++RA+ +K+ L SGG+++I+ Sbjct: 235 ESDYRVLLELSEKLAPDLKNRINLYNKKMPIFHVYGIEKELERAIRKKIWLDSGGFIVIE 294 Query: 296 QTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 QTEA+ +D+NTG + G +N TI TN+EA + IARQLRLR++GGIIIIDFIDM Sbjct: 295 QTEALVAIDVNTGKYTGKKNAARTILKTNLEAAREIARQLRLRDIGGIIIIDFIDMKERR 354 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 H++ VL + E+ L+KDR TS+ G + LGL+EMTR++ RE + ++ EC C G+G + Sbjct: 355 HQQEVLETFEKELAKDRSVTSIQGLTKLGLLEMTRQKVREGLGELMQKECSYCRGKGLIL 414 Query: 416 TVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQI 475 + +V I+R I + + R +V P V +LKG+ L +IF V +++ Sbjct: 415 SANSVAESIIRNIQLKKASEEFSRAVVECHPLVVSSLKGDNGEVLQ--KIFKKTGVSLEL 472 Query: 476 EPL 478 +P+ Sbjct: 473 KPV 475 >UniRef50_Q1PY04 Strongly similar to ribonuclease E (RNase E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PY04_9BACT Length = 509 Score = 351 bits (900), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 187/472 (39%), Positives = 285/472 (60%), Gaps = 5/472 (1%) Query: 5 LLVN-VTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N + P E R+A ++ IL+E++IER +R I GNIYKGRV + P ++AAFVDIGL Sbjct: 11 MLINAIEPEECRIAILENNILEELYIERSSREQIAGNIYKGRVVNIEPNLEAAFVDIGLK 70 Query: 64 KAAFLHASDIM-PHTECVAGEEQKQFTVRD--ISELVRQGQDLMVQVVKDPLGTKGARLT 120 K FLHASD++ P GEE VR I ++++QG++++VQV K+ LGTKG LT Sbjct: 71 KNGFLHASDVLVPSEGKNQGEEADPPPVRHHRIRDVLQQGKEILVQVTKESLGTKGPSLT 130 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGE 179 T I+LP RYLV MP GVS++I E ER+RLKK++ + GFI+RTA + Sbjct: 131 TYISLPGRYLVLMPEVKRYGVSKKITEEEERQRLKKILESLNPPKNIGFIVRTAGVQQTK 190 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++W + ++ K +Y E L RV+RD +++ I VDS + Sbjct: 191 RELQKDFHYLLKLWKNICKKSKEIDAPGVIYQESDLVIRVIRDIFSQDINEIIVDSESVF 250 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + EF +P+ +L+ Y +P+F F +EN I+ RK+ L GG ++++QTEA Sbjct: 251 KRTREFLRIIMPKYEKQLKFYNKEKPLFHNFGIENAIEEINSRKIPLLHGGSIVLEQTEA 310 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + +D+N+G + G + ++T F TN+ A + IARQ+RLR+LGG+I+IDFIDM NE H + Sbjct: 311 LVAIDVNSGKYKGKCDPEETAFRTNMIAAKEIARQIRLRDLGGVIVIDFIDMRNEKHIQA 370 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V ++ +L + R +T + S G +E+TR+R R S+ VL EC C G G KTVE+ Sbjct: 371 VEKAIADSLKRHRARTKMLKMSKFGTIEITRQRIRPSLRDVLFEECKFCCGTGYAKTVES 430 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQV 471 +C IMR++ H R + ++ V + L+ ++ +AE+E K++ Sbjct: 431 LCLNIMRDVKFALHLPQVVRIEITSNNDVVDYLQNQKRKQMAEIEDAYNKKI 482 >UniRef50_UPI0001C430FE cytosolic axial filament protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C430FE Length = 503 Score = 350 bits (899), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 190/490 (38%), Positives = 291/490 (59%), Gaps = 6/490 (1%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++ N E R A ++ G + E+ +ER A IVGN+Y GRV VLPGMQAAFVDI Sbjct: 1 MNRKIYFNTATRERRAAIVENGQVVELLVERPAENRIVGNVYIGRVVNVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMP-HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G +K FL+ D++ H A E +KQ R+I+E V +GQ+L+VQV K+ G KG RL Sbjct: 61 GREKNGFLYRDDLLSFHLSEEADEVKKQ---RNITEFVTKGQELLVQVTKEGFGQKGPRL 117 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 + +++P +Y V+MP +VGVS+R+ +E ERERL+ + + E G IIRT E Sbjct: 118 SGVVSMPGKYTVYMPEGGYVGVSRRMGTEEERERLRGIGEDLLKENEGMIIRTVCEDAKP 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + D +L+ W V + K + ++ +L ++++ DF+ ++D I +D Y Sbjct: 178 EVIEQDLHFLRTSWESVWQEGKEKRAPALIHQGSSLIEKMMLDFSLNQIDEIVIDDADDY 237 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + L + Y ++ K+ Y ++ IF +F ++ E+ +AL R++ LK+G YLI+DQTEA Sbjct: 238 QTLKALLAPY-SDVHEKVRLYHDKENIFSVFGIDKELDKALRRQIWLKNGAYLIVDQTEA 296 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T +D+NTG F G +L DT+ TN+EA + IARQLRLR+ GIIIIDFIDM E+ R Sbjct: 297 LTVIDVNTGKFTGKTDLQDTVRKTNLEAAKEIARQLRLRDTSGIIIIDFIDMKREEDREY 356 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 VL + ++ L +DR KT+V G + LGLVEMTRK+ R+S++ L CPTC +G+V + E Sbjct: 357 VLEAFKRGLKQDRTKTNVVGLTGLGLVEMTRKKVRQSLQASLSKACPTCKEQGSVLSDEA 416 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 Y+I R ++ + D + L+ AV+ L G + L ++E G ++ + Sbjct: 417 QAYKIER-LIWEYRGMDHEAILIELPSAVSAVLAGPKGELLKQLEEATGFRILLMPNKHM 475 Query: 480 NQEQFDVVMM 489 +E F + M Sbjct: 476 PEEAFAIRFM 485 >UniRef50_Q1IRN1 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRN1_ACIBL Length = 1031 Score = 347 bits (891), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 172/396 (43%), Positives = 263/396 (66%), Gaps = 2/396 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERE 152 IS+L+++GQ+++VQ+ K+P+G KGAR+T+ I LP R+LV+MP +HVGVS++I S+ ER+ Sbjct: 635 ISDLLKEGQEILVQIAKEPIGKKGARITSHIALPGRFLVYMPTVNHVGVSRKIASDEERQ 694 Query: 153 RLKKVVA-EYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYG 211 RLK++V+ E + GGFI+RTAA V E EL +D +LK +W+++ R + ++ +Y Sbjct: 695 RLKRIVSSERENGHGGFIVRTAAANVKEDELRADIRFLKHLWSEIKGRSDKSKSPALIYH 754 Query: 212 ELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFD 271 +L L +RVLRD ++ I VD+ YE +L F S + P + +++ YT P+F+ F Sbjct: 755 DLNLVERVLRDQVTSDFTTIWVDNESEYERVLRFASRFQPSLVRRIKLYTKNTPLFEEFG 814 Query: 272 VENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN-LDDTIFNTNIEATQA 330 ++ EI +AL+ KV LKSGGY++I+QTEA+ +DINTG +VG L+DTI TN++A + Sbjct: 815 IQEEINKALKAKVWLKSGGYIVINQTEALVAIDINTGKYVGKTTRLEDTIVKTNVDAIKE 874 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 I RQ+RLR+LGGII+IDFIDM+ +R++V+ +LE+AL DR + V F+ GLV +TR Sbjct: 875 IVRQIRLRDLGGIIVIDFIDMDERKNRQKVMAALEEALKSDRAPSKVLQFNDFGLVAITR 934 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE 450 KR ++S+E L C C G VK+V T+C EI E+ ++ D + +P VA+ Sbjct: 935 KRVKQSLERTLGTPCSYCEATGFVKSVPTMCSEIYTEVRKLAKHLDGKDVTIRVNPEVAK 994 Query: 451 ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 A+K + E E GK V V+ +P +QE FD+ Sbjct: 995 AIKENNGKLVQEFEELTGKTVIVKSDPAMHQEHFDI 1030 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 41/74 (55%), Positives = 53/74 (71%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M EL V+ P ETRVA ++ L EI ERE + G+IYKGRV+RVLPGMQ+AFVD+ Sbjct: 1 MNKELYVSSNPHETRVALVEDDQLAEIFYERENEYTLAGSIYKGRVTRVLPGMQSAFVDV 60 Query: 61 GLDKAAFLHASDIM 74 GL++ AFL+ SD + Sbjct: 61 GLERDAFLYVSDFL 74 >UniRef50_C1F7B7 Ribonuclease, Rne/Rng family, insertion n=2 Tax=Bacteria RepID=C1F7B7_ACIC5 Length = 1013 Score = 344 bits (883), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 172/396 (43%), Positives = 257/396 (64%), Gaps = 2/396 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERE 152 IS+L++QGQ+++VQ+ K+P+ KGAR+T+ I LP R+LVFMP +HVGVS++I S+ ER+ Sbjct: 617 ISDLLKQGQEILVQIAKEPIAKKGARITSHIALPGRFLVFMPTVNHVGVSRKISSDEERQ 676 Query: 153 RLKKV-VAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYG 211 RLK++ ++E D GGFI+RTAAEG GE EL +D +L +W ++ ER + +Y Sbjct: 677 RLKRILISEKGDATGGFIVRTAAEGAGEDELRADIRFLINLWNEIKERSDSGKAPALIYH 736 Query: 212 ELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFD 271 +L L +R+LRD E I VDS YE ++ F + + P + +++ YT P+F+ F Sbjct: 737 DLNLVERILRDQVSEEFSTIWVDSETDYERIVRFLNRFQPSLVRRVKLYTKEMPLFEQFG 796 Query: 272 VENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR-NLDDTIFNTNIEATQA 330 +++EI +AL+ KV LKSGG ++I+QTEA+ +DINTG +VG L+DTI TN++A Sbjct: 797 IQDEITKALKSKVWLKSGGSIVINQTEALVAIDINTGKYVGKTARLEDTIVKTNLDAIPE 856 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 I RQ+RLR+LGGII+IDFIDM+ +R +VL +LE+ L DR + V F+ GLV +TR Sbjct: 857 IVRQIRLRDLGGIIVIDFIDMDERKNRHKVLQALEEELKHDRAPSKVLQFNDFGLVAITR 916 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE 450 KR ++S+E L C C G G VK+ TV EI E+ ++ ++ L+ +P V + Sbjct: 917 KRVKQSLERTLSIPCNICTGTGMVKSPATVANEIYVEMRKMQRHLENKDVLLRVNPEVVK 976 Query: 451 ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 LK L E+E GK + V+ +P + EQFD+ Sbjct: 977 TLKASGGRWLNELEEMTGKTIIVKSDPTLHPEQFDI 1012 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 40/78 (51%), Positives = 56/78 (71%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E+ ++ TP ETR+A ++ L EI+ ERE + G+IYKGRV+RVLPGMQ+AFVDI Sbjct: 1 MAKEICISSTPHETRLAILEDDQLAEIYYERENEYTLAGSIYKGRVTRVLPGMQSAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTE 78 GL++ AFL+ +D + E Sbjct: 61 GLERDAFLYVTDFLEEQE 78 >UniRef50_B5JNK0 Ribonuclease, Rne/Rng family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNK0_9BACT Length = 582 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 182/506 (35%), Positives = 296/506 (58%), Gaps = 23/506 (4%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIER--EARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 EL++N P E RV + GIL + IER A+R IVG I+KGR+ + PG++AAFVDIG Sbjct: 69 ELIINSEPLEIRVGQLVDGILDKFDIERRHSAQR-IVGGIFKGRIKNLDPGLKAAFVDIG 127 Query: 62 LDKAAFLHASDIMPH-----------TECVAGEEQKQFTVRDISELVRQGQDLMVQVVKD 110 + K AFLH DI P G++Q + +++I G ++++Q+ K Sbjct: 128 MPKNAFLHYWDIQPQEADSSIEVVRVNSSRKGKKQAKIPLKEIPNHYPIGTEIVIQITKG 187 Query: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFI 169 P+GTKG R TT++++P R++V +P + G+S++IE ER+RLKK++ + +G G I Sbjct: 188 PIGTKGPRSTTNLSIPGRFIVLVPHSDQCGISRKIEDNKERQRLKKIIRDLTIPEGMGII 247 Query: 170 IRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELD 229 +RTA EG D L + W K+ ++ + LY E LA+R +RDF ++D Sbjct: 248 VRTAGEGKKARYFVRDLHILLQTWEKIQKKMDSARAPACLYKEPDLAERTVRDFLTEDID 307 Query: 230 RIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSG 289 R+ +D+ + + E ++ TSK++ Y PIF+ +++E +I++ +R+V L SG Sbjct: 308 RVLIDNEEDHGRISETVAQISKRSTSKIQLYQDSIPIFERYNIEKQIEQTFQRQVPLPSG 367 Query: 290 GYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFI 349 G ++I++TEA+ +D+NTG+ N +DTIF N EA + +ARQ+RLRN+GG+IIIDFI Sbjct: 368 GAIVIEETEALIAIDVNTGSHKNRGNENDTIFQVNCEAAEEVARQIRLRNIGGLIIIDFI 427 Query: 350 DMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCH 409 DM HR +L + A+S D+ KT + S LG+++MTR+R +ES+ L +CP C Sbjct: 428 DMKQRRHRNAILSRMRDAMSSDKAKTHILPISPLGIMQMTRQRMQESVSSGLYTDCPYCR 487 Query: 410 GRGTVKTVETVCYEIMRE---IVRVHHAYDSD-----RFLVYASPAVAEALKGEESHSLA 461 G+G VK+ TV E+ R+ I+R D + + +PA+ + L+ E++ L Sbjct: 488 GKGIVKSGTTVSVELQRKLSGIIRRARNRTPDLAKPIKLRILVNPAIIDRLREEDADLLI 547 Query: 462 EVEIFVGKQVKVQIEPLYNQEQFDVV 487 +E Q+ + +P ++ E + V+ Sbjct: 548 SLEKDYNAQLTFRADPNFHVENYRVI 573 >UniRef50_Q1D0P4 Ribonuclease, Rne/Rng family n=7 Tax=Proteobacteria RepID=Q1D0P4_MYXXD Length = 936 Score = 343 bits (879), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 177/404 (43%), Positives = 258/404 (63%) Query: 83 EEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVS 142 E+ K I +L++ GQ+++VQ+ KDP+GTKGARLT+ I++P R+LVFMP HVG+S Sbjct: 349 EKAKPRRTDKIEDLLKVGQEVVVQISKDPIGTKGARLTSHISIPGRHLVFMPTVDHVGIS 408 Query: 143 QRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKR 202 +RI +E ER RL+ +V GFI+RT AE V + +L SD +L VW +V+ + ++ Sbjct: 409 RRISNEKERRRLRDIVDRLRPPGTGFIVRTVAENVPQEKLESDIRFLIEVWNQVVRKNEK 468 Query: 203 PQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTG 262 L+ +L L R RD +++++ VD R YE +L F + P + ++ + G Sbjct: 469 RGGPGLLHPDLDLILRATRDLFAHDVEKLVVDDREEYERILGFVTAQDPALRDRVALHEG 528 Query: 263 RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFN 322 +FD + +E E+QRA +RKV LKSGGYLIIDQ EA+T +D+N+G +VG ++L++TI Sbjct: 529 DDTVFDAYGIEQELQRATQRKVWLKSGGYLIIDQAEALTAIDVNSGRYVGKKSLEETITK 588 Query: 323 TNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSA 382 N+EA + I QLRLRN+GGIII DFIDM +R +V +L++AL +D+ KT+V S Sbjct: 589 INVEAAKEIVYQLRLRNIGGIIICDFIDMEKAQNRDKVFKALQEALGRDKAKTNVLRISE 648 Query: 383 LGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLV 442 LGLVEMTRKR RESI +L +CP C G G VKT TV YEI REI R Y ++ Sbjct: 649 LGLVEMTRKRVRESIGRMLHEDCPYCDGNGFVKTATTVAYEIFREIRREAPGYKDSTLVI 708 Query: 443 YASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + VA L+GEE + L + K ++V+ + Y++EQ+D+ Sbjct: 709 NCNAEVARLLQGEERNELRHLMDRYNKSIQVKAQQNYHREQYDI 752 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 45/74 (60%), Positives = 61/74 (82%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M++ L++N ETRVA ++GG + E ++ER+ +G+VGNIYKGRV RVLPGMQAAFVDI Sbjct: 1 MSSILVINAAGRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIM 74 GL+KAAFL+ SD++ Sbjct: 61 GLEKAAFLYVSDVV 74 >UniRef50_A9ESZ7 Ribonuclease G n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESZ7_SORC5 Length = 907 Score = 341 bits (875), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 176/397 (44%), Positives = 259/397 (65%), Gaps = 3/397 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERE 152 I E+VR+GQ+++VQV K+P+GTKGAR+T+ I+LP RY+V++P H+G+S+RI SE ER Sbjct: 508 IREVVREGQEVIVQVSKEPIGTKGARVTSHISLPGRYVVYLPTVDHIGISKRIGSEKERS 567 Query: 153 RLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRP-QTRYQLYG 211 RL+ + QGG I+RT AEG+ + +L +D YL R+W +V ++++ + LY Sbjct: 568 RLRDAIEAMKPPQGGLIVRTLAEGLTKKQLKADVGYLVRLWGEVAKKRESGVRAPAVLYT 627 Query: 212 ELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFD 271 EL L + RD ++++I +D R Y L F ++PE +E Y G +PIFD + Sbjct: 628 ELDLVLKTARDLFTDDIEKIVIDDREEYIRLRRFVEMFMPERADAVELYEGTEPIFDAYG 687 Query: 272 VENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH--RNLDDTIFNTNIEATQ 329 +E+EIQRAL RKV L SGG+LIIDQ EA+T +D+NTG FVG ++L++TI TN+EA + Sbjct: 688 IEDEIQRALSRKVPLPSGGHLIIDQAEALTAIDVNTGRFVGKGSKDLEETILTTNLEAVE 747 Query: 330 AIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMT 389 IA QLR RN+GG+II+D IDM +R +V LE+ LS+D+ KT++N S LGL+EMT Sbjct: 748 EIAYQLRFRNIGGLIILDLIDMERAQNREKVRRRLEELLSRDKAKTTLNRISDLGLIEMT 807 Query: 390 RKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVA 449 RKRTRES+ + C C G G +++ +TV YEI+R+I R +V A PAV Sbjct: 808 RKRTRESLGRTILEPCFYCDGTGQLQSKQTVAYEILRQIRRERMNLPGYSVVVNAHPAVI 867 Query: 450 EALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + LK +E ++ E E +++ + Y+ EQFD+ Sbjct: 868 DLLKNDERIAVQEAERLFQRRIDLVPRKEYHLEQFDL 904 Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 43/70 (61%), Positives = 59/70 (84%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 L++NV ETRVA I+ GI+ E+H+ERE+ +G +GNIY G+VSRVLPGMQAAF+D+GL++ Sbjct: 6 LVINVDIRETRVALIENGIIAELHLERESSKGTLGNIYLGKVSRVLPGMQAAFIDVGLER 65 Query: 65 AAFLHASDIM 74 AAFLH D++ Sbjct: 66 AAFLHVEDLI 75 >UniRef50_UPI0001C31D95 ribonuclease, Rne/Rng family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D95 Length = 636 Score = 340 bits (873), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 197/498 (39%), Positives = 292/498 (58%), Gaps = 31/498 (6%) Query: 1 MTAELLVNVTPSETRVAYID------------------------GGILQEIHIEREARRG 36 M ++LV+V ETRVA ++ G + E+++ER R Sbjct: 1 MKKQVLVSVDRGETRVALLEATGDVAPAPRTSGRRRRKPANPSAGYRVAELYLERRGNRS 60 Query: 37 IVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI-MPHTECVA-GEEQKQFTVRDIS 94 IVGNIYKG+V VL G++AAFVDIGL+K FLH +I +P E G Q + ++ I Sbjct: 61 IVGNIYKGKVDNVLAGLEAAFVDIGLEKNGFLHVDEIVIPGVETPRRGRGQGKDGLK-IH 119 Query: 95 ELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERL 154 +L+R GQ+++VQVVKDPL TKGARL+ ++T+P RY+V+ P VGVS+R+ + ER+RL Sbjct: 120 DLLRPGQEVVVQVVKDPLKTKGARLSMELTIPGRYMVYTPQGEGVGVSRRL-PDKERDRL 178 Query: 155 KKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELA 214 +K A + GG IIRTAA G + + YL ++ + +R + Q ++ E Sbjct: 179 RKEAARLDLQGGGAIIRTAAFGARREDFEREMQYLFKLNDVLAKRVEETQAPDLVFQEAD 238 Query: 215 LAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVEN 274 L+ RV+RD +R VD + Y+ L+ F + PE+ ++E + P+F+ F VE Sbjct: 239 LSIRVVRDVFSDHFERAVVDDQKQYQRLVSFFTRTAPELVDRVELWEEEAPLFERFGVER 298 Query: 275 EIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH---RNLDDTIFNTNIEATQAI 331 EIQ L R+V+L SGGYLIID EA+T +D+NTG+F+G L+DTI TN+EA + Sbjct: 299 EIQGTLTRRVDLPSGGYLIIDYAEALTVIDVNTGSFIGRGRGARLEDTITRTNLEAAEEA 358 Query: 332 ARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRK 391 RQLRLR++GGII+IDFIDM +R VL +L ++L +DR KT V S LGLVEMTR+ Sbjct: 359 VRQLRLRDIGGIIVIDFIDMARARNRDAVLKTLRKSLDEDRTKTFVVEISPLGLVEMTRQ 418 Query: 392 RTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEA 451 E + ++ CPTC G G +++ ET+ + R + + ++++ L+ +P V Sbjct: 419 NVTEGVREIMTRHCPTCGGEGVIRSEETIAIDFERRLRDIAKEHEAEALLLQINPRVGAV 478 Query: 452 LKGEESHSLAEVEIFVGK 469 G + L ++E GK Sbjct: 479 FTGNSARILRQLEEETGK 496 >UniRef50_Q01YX3 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YX3_SOLUE Length = 913 Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 168/397 (42%), Positives = 263/397 (66%), Gaps = 3/397 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERE 152 IS+L+++GQ+++VQ+ K+PLG KGAR+T+ I LP R+LV+MP H+GVS++I S+ ER Sbjct: 518 ISDLLKEGQEIIVQIAKEPLGQKGARITSHIALPGRFLVYMPTVDHIGVSRKIPSDDERL 577 Query: 153 RLKKVV-AEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYG 211 RLK+++ GG+I+RTA +G E EL +D +L +W + ++ +R ++ Sbjct: 578 RLKRILQTNRTGIPGGYIVRTAGDGRTEEELRADMMFLYNLWLDMRQKAERRAAPLLIHH 637 Query: 212 ELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFD 271 +L + +R+LRD + + VD+ YE++L F + P + ++++ YT PIFD F Sbjct: 638 DLNVVERILRDQLTSSYKSVWVDNEEVYESVLRFVQRFQPALVNRVKMYTRSTPIFDEFG 697 Query: 272 VENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN-LDDTIFNTNIEATQA 330 + E+++AL KV LKSGGY++I+QTEA+ +DINTG +VG N L+DTI TN +A + Sbjct: 698 ITAELEKALRPKVWLKSGGYIVINQTEALVAIDINTGKYVGKSNRLEDTIVKTNTDAIKE 757 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 I RQ+RLR+LGGII++DFIDM+ +R++V+ +LE+A+ DR + F+ GLV +TR Sbjct: 758 IVRQIRLRDLGGIIVVDFIDMDERKNRQKVMQALEEAMRADRAPYKILQFNDFGLVAITR 817 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE 450 KR ++S+E LC CP C G G VK+ +TV EI++E ++ A D + L A P VA+ Sbjct: 818 KRVKQSLERTLCTPCPYCEGAGYVKSPQTVVGEILQEAHKIARAVDGNVMLRVA-PEVAK 876 Query: 451 ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 LK ++ L EVE +G+ V V+ +PL +QE+FD+ Sbjct: 877 LLKSNQNTFLQEVEEILGRPVIVKSDPLLHQEKFDLA 913 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 39/74 (52%), Positives = 54/74 (72%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ EL+++ T ETRVA I+ + EI+ +RE + G+I+KGRV+RVLPGMQ+AFVDI Sbjct: 1 MSKELIISATRHETRVAVIEEDQVVEIYHQRENEYSLAGSIHKGRVTRVLPGMQSAFVDI 60 Query: 61 GLDKAAFLHASDIM 74 GL + AFL+ SD Sbjct: 61 GLGRDAFLYVSDFF 74 >UniRef50_B3DX65 Ribonuclease G and E n=7 Tax=Verrucomicrobia RepID=B3DX65_METI4 Length = 554 Score = 338 bits (866), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 193/497 (38%), Positives = 286/497 (57%), Gaps = 11/497 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E+ ++ P E RVA +D G+L+E IER +++ I NIYKGRV+ + G++A FVDIG Sbjct: 49 NKEIAISCEPLERRVALLDEGLLEEFAIERGSQKEIAQNIYKGRVNNIDQGLKALFVDIG 108 Query: 62 LDKAAFLHASDIMPHTECVA-------GEEQKQFTVR--DISELVRQGQDLMVQVVKDPL 112 + K AFLH D +P G + K R DI + G +++VQV K P+ Sbjct: 109 IGKNAFLHFWDAIPAALDAGIELFERKGTKSKARLPRAEDIPNIYPPGSEVVVQVTKGPI 168 Query: 113 GTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIR 171 GTKG R+TT+ITL RYLV MP G+S++IE ER RL+K++ E +G G IIR Sbjct: 169 GTKGPRVTTNITLAGRYLVLMPYNEQFGISRKIEDPKERARLRKILNELRIPEGMGVIIR 228 Query: 172 TAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRI 231 T EG D A L + W + ++ + LY E L +R +RDF ++++I Sbjct: 229 TVGEGQKSRYFVRDLAILLQKWNAIEQKMRECPAPVLLYMEPDLIERTVRDFLTDDVEKI 288 Query: 232 RVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGY 291 +D + + + ++ K+ +Y P+F+ ++E +I A RKVEL SGGY Sbjct: 289 YIDDENEVKRIKDLVAQISKRSQKKIIYYNEPIPLFEKLNIERQIDTAFMRKVELPSGGY 348 Query: 292 LIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDM 351 +IID+TEA+ +D+NTG ++ D+ I TNIEA I+RQLRLRN+GG+++IDFIDM Sbjct: 349 IIIDETEALVAIDVNTGKAKVGKDQDNMILKTNIEAAAEISRQLRLRNIGGLVVIDFIDM 408 Query: 352 NNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGR 411 + + V L++ + KDR K ++ S+ GLVEMTR+R +ESI H L CP CHGR Sbjct: 409 KSRRDQHLVFEKLKECVRKDRAKINLLPISSFGLVEMTRQRVQESIWHSLYVPCPHCHGR 468 Query: 412 GTVKTVETVCYEIMREIVRVHHAYDSDRFL-VYASPAVAEALKGEESHSLAEVEIFVGKQ 470 G VK+ ET+ EI R I RV + + L V + V + LK E+ L ++E + + Sbjct: 469 GMVKSPETMSIEIQRAINRVIRLHPEVKELRVILNGFVLDRLKSEDEELLVDLERRMQGK 528 Query: 471 VKVQIEPLYNQEQFDVV 487 + + +P N E+F +V Sbjct: 529 LYFRTDPRINYEEFKIV 545 >UniRef50_A8MHL2 Ribonuclease, Rne/Rng family n=2 Tax=Alkaliphilus RepID=A8MHL2_ALKOO Length = 501 Score = 337 bits (864), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 187/433 (43%), Positives = 281/433 (64%), Gaps = 12/433 (2%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +++V+V SE R+A ++ L E++IER + IVGNIYKGRV VLPGMQAAFVDIGL+ Sbjct: 3 QIIVDVGISENRLAILEDEELVELYIERRNNKRIVGNIYKGRVVNVLPGMQAAFVDIGLE 62 Query: 64 KAAFLHASDIMPHTECVAGEE---QKQFTVRDIS--ELVRQGQDLMVQVVKDPLGTKGAR 118 K FL+ D + G+E +K F R+IS ++V+QGQ+++VQV+K+P+ KGAR Sbjct: 63 KNCFLYVKDAL-------GQEYFNKKDFVDREISIKDVVKQGQEIIVQVIKEPIADKGAR 115 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 +TT+ITLP RYLV MP ++GVS++I S ERERLK + E G I+RT AEG Sbjct: 116 VTTNITLPGRYLVLMPDTQYIGVSRKIGSAEERERLKAEIEALKPENMGVILRTVAEGKS 175 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + + D +L ++W K+ + KK +Y + L + +RD + ++ Sbjct: 176 KDDFREDIKFLLKLWQKIEKEKKLGFAPRLIYKDFDLIDKTIRDTFSKNIHEFIINDENE 235 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 Y++ ++ P + +L ++ IF + +E++I +ALERK+ LKSGGY++ID TE Sbjct: 236 YKSAMDLVELLSPNLKDRLSYFEESHDIFRHYKIESQIHKALERKIWLKSGGYIVIDSTE 295 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T VD+NTG +VG +L+DT+ TN+EA IA+QLRLR++GGIIIIDFIDM+NE+ + Sbjct: 296 ALTVVDVNTGKYVGITDLEDTVLKTNLEAAVEIAKQLRLRDIGGIIIIDFIDMSNEEDEQ 355 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 +VL+ LE++L+KDR K+ + G + LGLVEMTRK+ R+ +E V+ +C C G G + Sbjct: 356 KVLNLLEKSLNKDRTKSKILGMTELGLVEMTRKKVRQKLESVMQKKCHCCDGSGKLLNEY 415 Query: 419 TVCYEIMREIVRV 431 T+ +E+ R+ Sbjct: 416 TLLQRFEKEMRRI 428 >UniRef50_C6D805 Ribonuclease, Rne/Rng family n=3 Tax=Bacillales RepID=C6D805_PAESJ Length = 411 Score = 337 bits (864), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 171/409 (41%), Positives = 259/409 (63%), Gaps = 10/409 (2%) Query: 15 RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIM 74 + A + G L + +E+ G+VGN+YKGRV VLPGMQAAFVDIGL K AFL+ D++ Sbjct: 9 QTAVLMDGRLIDFFMEQSESSGLVGNVYKGRVVNVLPGMQAAFVDIGLGKNAFLYIDDLL 68 Query: 75 -PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 PH E E K I+ELV+ GQ+L+VQV+K+P+G+KGAR+TT TLP R+LV+M Sbjct: 69 HPHLE--KQPEHKP----SITELVKPGQELVVQVMKEPMGSKGARVTTHFTLPGRWLVYM 122 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 P A ++GVS++I +ESER R++ + + G I+RTAAEG E L +D L+++W Sbjct: 123 PIAGYIGVSKKIMAESERSRIRMIGERLRQGEEGIIMRTAAEGECEESLGADVDQLRQLW 182 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 T V++R + +L+ E L +R +RD ++D + +D Y + E P + Sbjct: 183 TSVLQRADHAKAPAELHREAGLLRRAVRDTLTDDMDEVWLDDPSRYSEAVSLLKEMTPHL 242 Query: 254 TSKLEHYTGRQ---PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAF 310 +L+ + R+ +FD F V ++I+ A ++ L+SGG L+ D+TEA+T +D+NT + Sbjct: 243 AGRLKLFEARKEKVSLFDRFGVTDQIEAAFSSRIRLESGGSLVWDETEALTVIDVNTAKY 302 Query: 311 VGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSK 370 +G L+DT+F TN+EA IAR LR+R++GGII+IDFIDM NE +R +V+ L K Sbjct: 303 IGATGLEDTVFKTNMEAADEIARLLRIRDVGGIIVIDFIDMENESNREKVMARLSDWAKK 362 Query: 371 DRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 DR K +V G++ LGL+E+TR++ R++ L CP C G G ++ + Sbjct: 363 DRTKCTVFGWTRLGLLELTRRKARDNAARQLTERCPACGGTGKKSSIHS 411 >UniRef50_A7HQG8 Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HQG8_PARL1 Length = 506 Score = 336 bits (862), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 191/506 (37%), Positives = 291/506 (57%), Gaps = 24/506 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIER------EARRG-----IVGNIYKGRVSRV 49 M+ E+L+NV P ETRVA ++ G E+ +ER +A+ G ++GNI+ GRV RV Sbjct: 1 MSEEVLINVGPGETRVAIVEDGRPVELFLERTMEDDLKAKTGRAGHSLIGNIFLGRVQRV 60 Query: 50 LPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVK 109 LPGMQAAFV++GL++A FL A + E +E T+ IS V++GQ ++VQ VK Sbjct: 61 LPGMQAAFVEVGLERAGFLGAREARCLCELTGLDEG---TLPPISACVQEGQTILVQAVK 117 Query: 110 DPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCD------ 163 DP+ KGARL+ ++T+P R LV +P S V +S+RIE E ERERL +V E + Sbjct: 118 DPISDKGARLSANVTIPGRLLVLVPNQSGVALSRRIEDEPERERLAALVEEMVERFNPMG 177 Query: 164 ---EQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVL 220 E GFI+RTAA G ++A+DA L W KV E +KR ++ +L + L Sbjct: 178 VTGEPAGFIVRTAAIGATAEDIAADARQLAEEWRKVRETEKRSTAPCVVFHDLDPVSKTL 237 Query: 221 RDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRAL 280 RD A+ R+ +D + + +PEM +++ + G +F L+DV+ EI+ AL Sbjct: 238 RDCVSADTSRVLIDCADAFGEAQRYCRRAMPEMLDRIQLFNGPGQLFSLYDVDGEIEAAL 297 Query: 281 ERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNL 340 E + EL SGG++ ++ TEA+T +D+N+G + L++T N+EA I QLRLR Sbjct: 298 EPRAELPSGGWITVETTEALTAIDVNSGRYTAATGLEETSVKINLEAVHEIVYQLRLRGT 357 Query: 341 GGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 GG+I+IDFI +N+ + ++V+ +L + +KDRV T ++G S GLVEMTRKR RE ++ + Sbjct: 358 GGLIVIDFIHLNDPANIQKVIDALNEGFAKDRVPTQISGMSEFGLVEMTRKRVREPLDKL 417 Query: 401 LCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSL 460 L E HGR KT T+ +++R I R A + AS V + L+ + + Sbjct: 418 L-TEPAYPHGRPRRKTCATMANDLLRRIAREAQATPGRPLVARASVEVVDWLERGNPYLV 476 Query: 461 AEVEIFVGKQVKVQIEPLYNQEQFDV 486 + V + + EP + +E+ DV Sbjct: 477 ERLRRKVPADISLIGEPAFPRERIDV 502 >UniRef50_A7H8A5 Ribonuclease, Rne/Rng family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H8A5_ANADF Length = 740 Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 179/403 (44%), Positives = 267/403 (66%) Query: 84 EQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQ 143 E++ ++I +L+++GQ+++VQV KDP+GTKGAR+T+ I+LP R+LVFMP H+G+S+ Sbjct: 291 EKRSKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFMPTVDHIGISR 350 Query: 144 RIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRP 203 RIE +SER RL+++V + GFI+RT AE V +L +D +L +VW +++ K + Sbjct: 351 RIEKDSERRRLREIVDRMRPDGTGFIVRTVAENVEAGKLEADIRFLIQVWNEIIRTKDKV 410 Query: 204 QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGR 263 L+G+L L R RD A++ ++ +D R YE +L F E P + S++E+Y G Sbjct: 411 SAPALLHGDLDLILRATRDLFTADVGKLVIDDRDEYERILRFVHEQAPHLESQIEYYRGE 470 Query: 264 QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNT 323 +PIFD + +E E++RA +RKV LKSGGY+I+DQ EA+T +D+N+G +VG +NL++TI Sbjct: 471 EPIFDAYGIEQELKRASQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGKKNLEETITKI 530 Query: 324 NIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSAL 383 N+EA + I QLRLRN+GGIIIIDFIDM+ +R +V +L+ AL +D+ KT+V S L Sbjct: 531 NVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKAKTNVLKISEL 590 Query: 384 GLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVY 443 GLVEMTRKR RES+ V+ C C G+G +K+ T+ YEI REI R + +V Sbjct: 591 GLVEMTRKRVRESVTRVMNEPCSYCEGKGHLKSKITITYEIFREIRREAVHFPEPVLVVN 650 Query: 444 ASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 P VA L+G E L + K ++V+ + Y+QEQFD+ Sbjct: 651 CHPEVARILQGSEREELRYLMDRFNKTIQVKPQSGYHQEQFDI 693 Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 43/69 (62%), Positives = 55/69 (79%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 L++N +ETRVA ++ + E ++ER+ +GIVGNIYKGRV RVLPGMQAAFVDIGLDK Sbjct: 7 LVINAAGAETRVALVENNTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLDK 66 Query: 65 AAFLHASDI 73 AAFL+ D+ Sbjct: 67 AAFLYVGDV 75 >UniRef50_D2R4N9 Ribonuclease, Rne/Rng family n=2 Tax=Planctomycetaceae RepID=D2R4N9_9PLAN Length = 543 Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 187/501 (37%), Positives = 285/501 (56%), Gaps = 37/501 (7%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M +E+L+NV+ P E R+A I+ G+L+E++IER ++ VGNIY+GR+ + P +QAAFVD Sbjct: 7 MKSEMLINVSQPEECRIAIIEDGLLEELYIERASQDNYVGNIYRGRIVNLEPSIQAAFVD 66 Query: 60 IGLDKAAFLHASDIMPH---------TECVAGEEQKQFTVRD------------------ 92 G+ + FLH SD+ P E + G + Sbjct: 67 FGVGRNGFLHISDVEPQYFRQGGYDPAEQIGGGRLADIDTGEDDDAPRPQQRRERRPPRG 126 Query: 93 --------ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQR 144 I E+ R+G +++VQV+K+ +GTKG L+T I++P RYLV MP VGVS++ Sbjct: 127 GRPRVKPPIQEIFRRGDEVLVQVIKEGIGTKGPTLSTYISIPGRYLVLMPALGRVGVSRK 186 Query: 145 IESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRP 203 IE + R L+ + E +G GFI+RTA + + EL+ D AYL R+W ++ R K+ Sbjct: 187 IEDDELRRTLRDTLLELNPPKGLGFIVRTAGQDRTKKELSRDMAYLLRLWKVIVRRLKKT 246 Query: 204 QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGR 263 +Y E + R +RD AE+D I +D +E EF +P ++L Y GR Sbjct: 247 AGPATIYEESDMIIRTIRDIFTAEIDAIYIDHPEAFERAKEFLQLVMPRNVNRLHQYEGR 306 Query: 264 QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNT 323 +P+F + VE EI + +RKV L+ GG ++IDQTEA+ +D+N+G F + D+T + Sbjct: 307 EPLFHKYKVEQEIVQIYQRKVPLRGGGSIVIDQTEALVAIDVNSGNFRAEDDADETAYQL 366 Query: 324 NIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSAL 383 NI A + IARQLRLR+LGG+I+ DFIDM E HRR V +L A+ +DR +T + S Sbjct: 367 NISAAKEIARQLRLRDLGGVIVNDFIDMRKERHRRGVERALRDAMRRDRARTKILRTSPF 426 Query: 384 GLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVY 443 GL+EMTR+R R S++ + +CP C GRG VKT E++ E++R ++ + R V Sbjct: 427 GLIEMTRQRIRPSLKRSVYGDCPCCSGRGVVKTAESMAIEVVRMLMLASQQPNVSRVTVR 486 Query: 444 ASPAVAEALKGEESHSLAEVE 464 + VA L ++ + ++E Sbjct: 487 VNSEVASYLNNKKRREIMKLE 507 >UniRef50_B0VJP4 Ribonuclease G n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJP4_9BACT Length = 505 Score = 333 bits (853), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 182/499 (36%), Positives = 288/499 (57%), Gaps = 22/499 (4%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E++VNV P E RVA ++ L E+ +ER ++ IVGNIYKG V VLPGM AAF++IG Sbjct: 7 NTEIIVNVHPLEKRVAVLEDSRLVELFVERREQQNIVGNIYKGIVKDVLPGMGAAFIEIG 66 Query: 62 LDKAAFLHASDI-----------MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKD 110 L++ AFLH SDI +P T+ V E+ Q I +L++ GQ+++VQV K Sbjct: 67 LERTAFLHYSDIVMDFLDIYENALPRTK-VNPEDSSQ-----IDKLLKPGQEIVVQVHKG 120 Query: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFII 170 P+G+KGARLT I++P +YLV P + VS++I S++ER R++ +++ D G I+ Sbjct: 121 PIGSKGARLTGQISIPGKYLVLFPNKDKIAVSRKIYSQAERSRIRNLLSGIKDPGYGLIV 180 Query: 171 RTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDR 230 RT AEG E + ++ L + W + ++ K + ++ E AL ++RD +DR Sbjct: 181 RTEAEGCEEDDFQTEYKALIKTWHLIEKQIKYAKAPVCVFEENALENYLIRDLFGENVDR 240 Query: 231 IRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGG 290 + +D + + ++ ++ PE+ + +E Y PIFD + +E +I+ L ++ L SGG Sbjct: 241 LVIDDKNFAKRIISQLTDISPELINNIEIYREDSPIFDAWGIEKKIETVLHSRIYLPSGG 300 Query: 291 YLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFID 350 + I+QTEA+ +D+NTG+F G N D+T+ TN+EA IARQ+RLR+L G+IIIDFID Sbjct: 301 NIKIEQTEALVAIDVNTGSFTGKTNYDETVRKTNLEAAAEIARQIRLRDLSGVIIIDFID 360 Query: 351 MNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHG 410 M E ++ VL L++ L +DR K V F+ LGLVE+TRKR R ++ + CP C+G Sbjct: 361 MVEEKYKNEVLEMLKKGLRRDRAKNKVYSFTELGLVEVTRKRMRNTLISNFSDPCPFCNG 420 Query: 411 RGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQ 470 G + + ++V I R + R + + +P + +K A E Q Sbjct: 421 SGRILSKDSVIMRIYRWLNRSDYFIKDKNLRIVVNPDLLNHIKQHNEDFTAYKE-----Q 475 Query: 471 VKVQIEPLYNQEQFDVVMM 489 ++ +P +QF V ++ Sbjct: 476 IEFTSDPSIRIDQFKVYLL 494 >UniRef50_Q9K8J2 Ribonuclease G (Cytosolic axial filament protein) n=1 Tax=Bacillus halodurans RepID=Q9K8J2_BACHD Length = 500 Score = 331 bits (848), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 193/482 (40%), Positives = 295/482 (61%), Gaps = 4/482 (0%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 +L N+ E R A ++ G + E+ IER IVGN+Y+GRV VLPGMQA FVDIG +K Sbjct: 4 ILFNMATRERRAAVVENGQVIELMIERPVEERIVGNVYRGRVVNVLPGMQACFVDIGREK 63 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 FL+ +++ ++ EE+ + R+IS+ V++G++L+VQV K+ GTKG RLT + Sbjct: 64 NGFLYRDELLSFH--LSNEEEDEKKKRNISDFVQEGEELLVQVTKEGFGTKGPRLTGVVA 121 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 P RY+V+MP A +VGVS++I E ERER + + G IIRTA + E Sbjct: 122 FPGRYVVYMPQAGYVGVSKKIFPEEERERWRSEWEQLLLNDEGLIIRTACKKEVRHEAEQ 181 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 + + +++W ++ +R K + LY L +R+LRDF E+ I VD R Y + + Sbjct: 182 EILFFRQMWEELQKRGKGAKAPSLLYQSSGLIERILRDFPLDEVGEIVVDDREEYHFIKQ 241 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 + Y P M S++ Y G++ +F VE EI++ L R+V LK+GGYL++D EA+T +D Sbjct: 242 LLASY-PNMESRVFLYKGKENVFSHLKVEKEIEKGLRRQVWLKNGGYLMMDHAEALTVID 300 Query: 305 INTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSL 364 +N+G F+G ++L DT+ NIEA + IA QLRLR++ GIIIIDFIDM E+ ++ VLH+L Sbjct: 301 VNSGKFIGKQDLQDTVVKVNIEAAKEIAHQLRLRDISGIIIIDFIDMKREEDQQLVLHTL 360 Query: 365 EQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEI 424 EQAL DR KT+V G + LGLVEMTRK+ R+S++ L CPTC G G V + E ++I Sbjct: 361 EQALKTDRTKTNVIGMTGLGLVEMTRKKVRQSLQASLSKPCPTCRGTGQVLSDEAQAFKI 420 Query: 425 MREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQF 484 RE+ + D++ ++ +A L G++ L +E +G ++ + +EQ+ Sbjct: 421 ERELWE-YRGSDAEAIVLELPSHIAPVLFGQDGGHLKRLETAIGSRILAVPKKTLKEEQY 479 Query: 485 DV 486 ++ Sbjct: 480 EI 481 >UniRef50_B1I4P9 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4P9_DESAP Length = 416 Score = 330 bits (847), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 182/412 (44%), Positives = 267/412 (64%), Gaps = 7/412 (1%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E++V+ + TRVA ++ + E++IE + +VG+I+KG V VLPG++AAFV++GLD Sbjct: 5 EIIVSTRDNATRVALLENRVPMEVYIEPDEEICLVGSIFKGVVENVLPGIEAAFVNVGLD 64 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + AFL+ +D++P + A +Q +RD L+ GQ+++VQV KDPLG KG R+T + Sbjct: 65 RNAFLYVNDVLPQS---ARADQSAAGIRD---LLHPGQEVIVQVAKDPLGNKGPRVTMRV 118 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELA 183 LP Y V MP +HVG+S+RIE ESERERL++VV E G I+RTAA G+ LA Sbjct: 119 NLPGHYTVLMPTVNHVGISRRIEDESERERLREVVHRARPEGMGAIVRTAARGIAAEVLA 178 Query: 184 SDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL 243 D L+++W + +R+ LY E L R++RD E++R+ +DS +Y L Sbjct: 179 DDIRELEKLWRDIQKREAGAAAPSLLYRECGLLPRIIRDLFTEEIERLVLDSFTSYARSL 238 Query: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 P++ S++ + + IF+ ++V EI +AL+RK L+ GGYLI DQ EA+T + Sbjct: 239 TILDTVNPQLKSRV-FWEDKPDIFEAYNVNQEINKALQRKTWLRCGGYLIFDQAEALTVI 297 Query: 304 DINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 D+NTG F G +L+DT++ TN+EA IARQLRLRNLGGIIIIDFIDM++E+HR RVL Sbjct: 298 DVNTGRFTGRVDLEDTVYKTNLEAAVEIARQLRLRNLGGIIIIDFIDMSHEEHRNRVLEV 357 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 L + + KDR +T + G + LGLVE+TRK+ S+ +L CP C G G ++ Sbjct: 358 LGEEIKKDRRRTHIMGLTRLGLVELTRKKVHPSLAELLLTNCPQCGGTGKIQ 409 >UniRef50_C4PNX0 Ribonuclease E n=17 Tax=Chlamydiales RepID=C4PNX0_CHLTZ Length = 512 Score = 328 bits (841), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 174/491 (35%), Positives = 289/491 (58%), Gaps = 19/491 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++L+N+ E R A++ G L ++ IER+ R + GNIY+GRV+ +L +Q+AF++I Sbjct: 1 MENDILLNIESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNILRNIQSAFINI 60 Query: 61 GLDKAAFLHASDIMPHTECV------------AGEEQKQFTVRDISELVRQGQDLMVQVV 108 + F+H SD++ +++ A + ++ + I EL++ ++VQVV Sbjct: 61 DERENGFIHISDVLENSKKFEQMFDIDSDADHAEPQPEETSEAPIEELLKLDSPVLVQVV 120 Query: 109 KDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-G 167 K+P+GTKGARLT++I++P RYLV +P + H GVS++IE R++LK+++ + Q G Sbjct: 121 KEPIGTKGARLTSNISIPGRYLVLLPNSPHRGVSRKIEDPLMRDQLKQLIRSFEMPQNMG 180 Query: 168 FIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAE 227 I RTA+ L ++A L W ++E+ P LY E + ++ + D Sbjct: 181 LICRTASISASTETLINEAQNLLNTWQSILEKFYSPDHPSLLYEETDILKKAVMTCVDKS 240 Query: 228 LDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELK 287 R+ +D TY+ +Y P+ T K+E+Y P+F+ F++E EI RA +RK+ L Sbjct: 241 YKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATKRKIWLS 300 Query: 288 SGGYLIIDQTEAMTTVDINTGAFVGHRN-LDDTIFNTNIEATQAIARQLRLRNLGGIIII 346 SGGYL D+TEAM T+D+N+G N +++T+ N+EA + IARQLRLRN+GG++II Sbjct: 301 SGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNIGGLVII 360 Query: 347 DFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECP 406 DFIDM + ++RRVL L++ + D + ++ S GLVEMTR+R RES+ L CP Sbjct: 361 DFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQTLFTTCP 420 Query: 407 TCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIF 466 C+G +KT E++ EI R++ ++ + + P +A +K E+ +VE+ Sbjct: 421 YCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQD----DVELI 476 Query: 467 -VGKQVKVQIE 476 + KQ+K +++ Sbjct: 477 RLAKQLKAKLQ 487 >UniRef50_B1H0J1 Ribonuclease G n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0J1_UNCTG Length = 488 Score = 320 bits (821), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 168/435 (38%), Positives = 256/435 (58%), Gaps = 15/435 (3%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E++VN T E+RVA +D G L + IER I+ NIYKGRV ++P + + FVDIG Sbjct: 17 EIIVNRTFEESRVAILDNGKLFNLFIERRESEKILNNIYKGRVKNIVPALNSLFVDIGFG 76 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + A+L DI+ R +++ GQD+MVQV K+P+ KGA++T I Sbjct: 77 RGAYLDVCDILKEH-------------RSKKNMIKAGQDIMVQVYKEPIHNKGAKVTMAI 123 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVGEAEL 182 +L R LV+MP ++++GVS+ I+ + E RLK + AE D GG IIRT AE +AE+ Sbjct: 124 SLTGRLLVYMPFSNNIGVSKNIKDKHEYNRLKSMTAELKKDISGGIIIRTKAEKATKAEI 183 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 ++ YL R+W + ER + ++ +L L + + D+ ++ +R+DS+ + + Sbjct: 184 KNEIKYLIRLWASITERFDDAKPMSLIHKDLGLVFQTVIDYFSDDVIFMRIDSQKELKDV 243 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 +F +PE ++ Y R PIF + +E EI+R KV L SGGYLII + E++ Sbjct: 244 TDFVEIVLPEFLDRIVFYDDRTPIFKKYGIEEEIKRLCSNKVWLSSGGYLIIQEAESLCA 303 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+G F +DT TN+EA + IARQLRLRN+GGII+IDFIDM +RR+VL Sbjct: 304 IDVNSGKFTAKSTQEDTAVITNLEAAEEIARQLRLRNIGGIIVIDFIDMKKASNRRKVLE 363 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +L +A D+ K + + LGL+EMTR+R R+S+ +L + CP CHG V + E++ Sbjct: 364 TLRKATKVDKAKIEIWPITRLGLIEMTRERKRKSLFSILGDICPVCHGLSFVLSKESIFI 423 Query: 423 EIMREIVRVH-HAYD 436 + EI ++ YD Sbjct: 424 NVCDEIKQLKIDGYD 438 >UniRef50_D1AAW2 Ribonuclease, Rne/Rng family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAW2_THECD Length = 1041 Score = 317 bits (812), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 166/400 (41%), Positives = 247/400 (61%), Gaps = 8/400 (2%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ G+L E +++R + + VGN+Y G+V VLP M+AAFVDIG + A L+A ++ Sbjct: 520 TQIAVLEDGVLVEHYVDRASHQSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEV 579 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G+ R I + ++ GQ ++VQV KDP+G KGARLT+ I+LP RYLV++ Sbjct: 580 NWDVAGLVGQP------RRIEQALKSGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVYV 633 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 P S G+S+++ + ER RLK+V+ + + G I+RTAAEG E ELA D A L W Sbjct: 634 PDGSMTGISRKL-PDKERSRLKQVLKKIMPDNAGVIVRTAAEGATEEELAGDIARLSAQW 692 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 + ++ K L+GE L RV+RD + + ++ V ++ + E+ P + Sbjct: 693 EHIHKQAKTASAPALLHGEPDLTIRVVRDIFNEDFSKLVVSGDTAWDMVSEYVGYVAPHL 752 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 +LE + Q + + ++ +I +ALERKV L SGG L+ID+TEAMT VD+NTG F G Sbjct: 753 AERLERWESDQDVLSAYRIDEQIAKALERKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGQ 812 Query: 314 -RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R VL L + LS+DR Sbjct: 813 GGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLLECLSRDR 872 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 K V ++LGLV+MTRKR + + C C+GRG Sbjct: 873 TKHQVAEVTSLGLVQMTRKRVGQGLLEAFSEPCECCNGRG 912 >UniRef50_C6E0U6 Ribonuclease, Rne/Rng family n=8 Tax=Desulfuromonadales RepID=C6E0U6_GEOSM Length = 919 Score = 312 bits (800), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 185/493 (37%), Positives = 285/493 (57%), Gaps = 12/493 (2%) Query: 5 LLVN-VTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N + P E RVA ++ G L ++ +E I GNIYKG V RV G+QAAFVDIGL Sbjct: 1 MLINALHPEEARVAIVEDGRLVDLDVEIAGNEQIRGNIYKGVVVRVEQGLQAAFVDIGLK 60 Query: 64 KAAFLHASDIMPHTECV---AGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 K FL ++ P E+Q+ R I E++R+GQ+L+VQV K KG+ LT Sbjct: 61 KLGFLQMGELHPENWKWRDDIPEDQRHRRPR-IQEVLRRGQELIVQVEKGERDNKGSALT 119 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGE 179 T ++LP RY+V MPG+ G+S+++E + ER++LK+++AE +G G+IIRT A G Sbjct: 120 TYVSLPGRYMVLMPGSDSAGISRKVEGDGERKKLKEIIAEMTIPEGYGYIIRTEAMGRTR 179 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D L + + + + +Y E AL R +RD+ A++D + VDS+ Y Sbjct: 180 DELQKDLDNLIATYQGIRSKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKDVY 239 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + E P ++ + ++PIF + +E +I E+KV LKSGG + I+ TEA Sbjct: 240 NDVRDCLKEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEA 299 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++D+N+G G + ++DT F TN+EA + ARQLRLR+LGG+I+IDFIDM + H Sbjct: 300 LVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKHNAE 359 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V +L+ AL D+ + +V+ S GL+EM+R+R R+++ ECP C GRG VK+VE Sbjct: 360 VEKTLKTALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKSVEA 419 Query: 420 VCYEIMREIVRVHHAYDSDRF--LVYASP-AVAEALKGEESHSLAEVEIFVGKQVKVQIE 476 + +R +VH A +V P VA L + H L+++E +V V+ + Sbjct: 420 MALSFLR---KVHAAAAKGTIGEVVGGLPLEVAYYLLNRKRHELSQIESDYDIEVTVKGK 476 Query: 477 PLYNQEQFDVVMM 489 P Y Q D+ ++ Sbjct: 477 PSYLLNQMDLELI 489 >UniRef50_C6MTB8 Ribonuclease, Rne/Rng family n=1 Tax=Geobacter sp. M18 RepID=C6MTB8_9DELT Length = 937 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 186/497 (37%), Positives = 291/497 (58%), Gaps = 14/497 (2%) Query: 1 MTAELLVN-VTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L+N + E RVA ++ G L ++ +E GNIYKG V RV G+QAAFVD Sbjct: 1 MSKKMLINALHAEEARVAIVEDGRLVDLDVEIAGNEQTRGNIYKGVVVRVEQGLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECV---AGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKG 116 IGL K FL ++ P E+Q+ R I E++R+GQ+L+VQV K KG Sbjct: 61 IGLKKLGFLQMGELHPENWKWRDDIPEDQRHRRPR-IQEVLRRGQELIVQVEKGERDNKG 119 Query: 117 ARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAE 175 + LTT +LP RY+V MPG+ G+S+++ESE ER++LK+++AE +G G+IIRT A Sbjct: 120 SALTTYASLPGRYMVLMPGSDSAGISRKVESEGERKKLKEIIAEMTIPEGYGYIIRTEAM 179 Query: 176 GVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDS 235 G EL D L ++ + E+ + +Y E AL R +RD+ A++D + VDS Sbjct: 180 GRTRDELQKDLDNLIALYEGIREKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDS 239 Query: 236 RLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIID 295 + ++ + + E P ++ + ++PIF + +E +I E+KV LKSGG + I+ Sbjct: 240 KDVFKDVRDALKEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIE 299 Query: 296 QTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 TEA+ ++D+N+G G + ++DT F TN+EA + ARQLRLR+LGG+I+IDFIDM + Sbjct: 300 PTEALVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRK 359 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 H V +L+ AL D+ + +V+ S GL+EM+R+R R+++ ECP C GRG VK Sbjct: 360 HNSEVEKTLKSALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVK 419 Query: 416 TVETVCYEIMREIVRVHHAYDSDRF--LVYASP-AVAEALKGEESHSLAEVEIFVGKQVK 472 +VE + +R +VH A +V + P VA L + H L+++E +V Sbjct: 420 SVEAMALSFLR---KVHAAAAKGTIGEVVGSLPLEVAYYLLNRKRHELSQIENDYDIEVT 476 Query: 473 VQIEPLY--NQEQFDVV 487 V+ +P Y NQ + +++ Sbjct: 477 VKGKPSYLLNQMELELI 493 >UniRef50_Q0AWI9 RNAse G n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWI9_SYNWW Length = 476 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 164/478 (34%), Positives = 284/478 (59%), Gaps = 17/478 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E++ V P E+RVA ++ G L E+ + VG IYKG++ +LPG+ F+DI Sbjct: 1 MIKEIIAEVYPWESRVAIVEDGRLAEVFWADQGEN--VGKIYKGKIKDILPGLSCVFIDI 58 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL + AFL+A D++ G+++ ++ EL++ GQD+MVQV K+ KGAR+T Sbjct: 59 GLARNAFLYAGDVVR-----VGKKKGL----NVYELLKSGQDIMVQVKKEAFSEKGARVT 109 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 D+++P R LV +P + V +S++I + R+ L+ ++ E E GG I+RTA + Sbjct: 110 GDLSIPGRLLVLLPFQNEVSISRKITGDERRKHLRSLLEESKPENGGIIVRTACLEAEDQ 169 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 E+ + L + W ++ +R + + +Y ++ + +R +RD+ D L RI +++R + Sbjct: 170 EIIQELNRLLKTWEEIKQRYQNRKAPSLIYEDMDVLERTMRDYLDGNLSRIVINNRRLKD 229 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +L++ S + ++++ G +F+ +++E +I+R+L RK+ LK+GGYLI D+TEAM Sbjct: 230 KILDYISGKKIFNSLRVDYEEG--ALFEKYNLEKDIKRSLRRKIWLKNGGYLIFDRTEAM 287 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+N+G F G N ++T+F N+EA I RQLRLR+LGGII+IDFIDM + ++ + Sbjct: 288 TVIDVNSGKFTGKDNFEETVFKINMEAAIEIPRQLRLRSLGGIILIDFIDMKEKSNQDEL 347 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 + L+ L KD+ T + G + LG +EMTRK++R + +EC C GRG + ++ + Sbjct: 348 IKVLKTGLEKDKANTRIIGITGLGFLEMTRKKSRYGVVEFFTDECSNCSGRGHIINLQAL 407 Query: 421 CYEIMREIVRVHHAY-DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 E R++ H Y ++++ + A P + + LK +E + +E GK V + +P Sbjct: 408 ASEAKRKM--AHMGYLENNQIICKAEPRLLKILKDDE-KDIGYIERRSGKSVLLLSDP 462 >UniRef50_C6JJB6 Ribonuclease G and E n=2 Tax=Fusobacterium RepID=C6JJB6_FUSVA Length = 489 Score = 311 bits (798), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 181/458 (39%), Positives = 282/458 (61%), Gaps = 15/458 (3%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 ++++N+ ++R A I+ G + EI IERE I G+IYKG+V+ VLPGM++AFV+IGL+ Sbjct: 3 QIVINIDEFQSRAAIIEDGKVVEILIEREEEGRINGSIYKGKVANVLPGMESAFVNIGLE 62 Query: 64 KAAFLHASDIMPHTECVAGEEQKQF-----TVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 K FL+ +D+ E+K + R I +++ G D++VQ++ +P GTKGAR Sbjct: 63 KNGFLYVNDLREF-------EEKYLDGILNSSRPIEDILNVGDDVVVQILNEPRGTKGAR 115 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 +TT T+P +YLV MP H+ +S++I+ E ERERL+ + E E G IIRTAA G Sbjct: 116 VTTHFTIPGKYLVLMPNNDHIAISKKIKDEKERERLESIFKEIKPENMGVIIRTAAFGKS 175 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 E + YL + W + ++ K + LY + + VLRD ++D + VD+ Sbjct: 176 EFHFEREIEYLVKKWEDIEKKIKGAKIGEVLYKDNGIITTVLRDIFSNDIDELIVDNEDV 235 Query: 239 YEALLEFTSEYIPE-MTSKLEHYT-GRQP-IFDLFDVENEIQRALERKVELKSGGYLIID 295 Y ++++ + + + + +K++ Y G++ IFDL+ + EI +AL V L+ GGYL+I Sbjct: 236 YWEVIDYINAFSEKTLKTKIKLYKDGKEKDIFDLYGINEEIDKALNEVVWLECGGYLVIQ 295 Query: 296 QTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 +TEA+ ++D+NTG G NL++T+ NTNIEA + I RQLRLRN GGIIIIDFIDM E+ Sbjct: 296 KTEALISIDVNTGKNTGSLNLEETVVNTNIEAAKEIPRQLRLRNFGGIIIIDFIDMRVEE 355 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 + +VL +LE+ L KDR+K ++ F+ LGLVEMTRKR+ + + + CP C+G G +K Sbjct: 356 DKIKVLEALEKHLQKDRIKNNIVHFTDLGLVEMTRKRSGKPLAYYFQEVCPCCNGTGKIK 415 Query: 416 TVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALK 453 + + + +E+M+EI D V S + E+ K Sbjct: 416 SKDALIHELMKEIKICSEDKDISTIKVRLSKNLIESFK 453 >UniRef50_D1B5Z1 Ribonuclease, Rne/Rng family n=3 Tax=Synergistaceae RepID=D1B5Z1_THEAS Length = 496 Score = 310 bits (794), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 177/445 (39%), Positives = 253/445 (56%), Gaps = 34/445 (7%) Query: 13 ETRVAYID-GGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHAS 71 E+RVA +D G L +I+IER R G IYK RV VLPGM AAFV++G + FL+ Sbjct: 16 ESRVAVLDPSGRLLDIYIERMWERQKAGEIYKARVDNVLPGMNAAFVNLGDGRNGFLYLE 75 Query: 72 DI--MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRY 129 D+ PH G++++VQV K KGAR+T ++LP RY Sbjct: 76 DLGRSPHP----------------------GEEILVQVAKTARKGKGARVTPKLSLPGRY 113 Query: 130 LVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYL 189 LV +P VGVS+RIE E ER+RLK + E + G I+RT A+G +L SD L Sbjct: 114 LVLVPEGKDVGVSKRIEDEEERQRLKVLGREVRPQGFGIIVRTVAQGCHMDQLKSDVEDL 173 Query: 190 KRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEY 249 +W + R LY + L RVLRD D ++ + VD+ + + E + Sbjct: 174 MDLWDSICAAASRSPAPCLLYRDRGLLDRVLRDELDHQVAEVVVDNPEELDLVREMVGRF 233 Query: 250 I-----PEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 PE+T Y GR P+F+++ VE E++ ALERKV L SG YL+IDQ EA+T +D Sbjct: 234 FSQGKGPEVT----LYRGRTPVFEVYGVEREMELALERKVWLPSGAYLVIDQAEALTVID 289 Query: 305 INTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSL 364 +NTG F G ++L TI TN+EA + IARQLRLR +GGI+++DFIDM++E HR+ +L + Sbjct: 290 VNTGKFTGSKDLKSTILKTNLEAAEEIARQLRLRAIGGIVVVDFIDMDDESHRQILLETT 349 Query: 365 EQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEI 424 + L DR + V G ++LGLVE+TR+RTR ++ V+ CP C G G V+ + + Sbjct: 350 RELLKGDRQRAKVFGVTSLGLVELTRRRTRGDLKSVMTRGCPMCGGSGLVEREDACAMRL 409 Query: 425 MREIVRVHHAYDSDRFLVYASPAVA 449 R + ++ + LV A+P +A Sbjct: 410 KRAVRKMTGDSPPEALLVAANPQLA 434 >UniRef50_C7Q8B4 Ribonuclease, Rne/Rng family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q8B4_CATAD Length = 1334 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 168/438 (38%), Positives = 256/438 (58%), Gaps = 16/438 (3%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 ++V + T++ ++ G+L E ++ R VGN+Y G+V VLP M+AAFVDIG + Sbjct: 685 MVVRQSGDRTQIGVLEDGVLVEHYVNRAQSASYVGNVYLGKVQNVLPSMEAAFVDIGKGR 744 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 A L+A ++ + G+ ++ I +++ GQ ++ QV KDP+G KGARLT+ I+ Sbjct: 745 NAVLYAGEVNFEAAGITGQAKR------IESVLKSGQAVLTQVTKDPIGHKGARLTSQIS 798 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 LP RYLV++P + G+S+++ E+ER RLK ++ E G I+RTAAEG E EL Sbjct: 799 LPGRYLVYVPEGTMTGISRKL-PENERNRLKTILKAVVPEHAGVIVRTAAEGATEDELRR 857 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQ--LYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D L W ++ + K LYGE L RV+RD + + ++ V ++ + Sbjct: 858 DVERLSAQWEEIQRKAKTSAGSAPTLLYGEPDLTVRVVRDIFNEDFSKLVVSGDQAWDTI 917 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 E+ P++ +LE +T Q IF + V+ ++ +AL+RKV L SGG L+ID+TEAM Sbjct: 918 REYVGGVAPDLAPRLERWTSEQDIFAVHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMVV 977 Query: 303 VDINTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+NTG F G NL++T+ NIEA + I RQLRLR+LGGII+IDFIDM E +R V+ Sbjct: 978 IDVNTGKFTGSGGNLEETVTRNNIEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVM 1037 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 L + L +DR K V ++LGL++MTRKR + + C C+GRG + +E V Sbjct: 1038 RRLLECLGRDRTKHQVAEVTSLGLIQMTRKRVGQGLLEAFSETCDKCNGRGVLVHMEPVP 1097 Query: 422 YEIMREIVRVHHAYDSDR 439 + H + D+DR Sbjct: 1098 H------GHGHGSEDADR 1109 >UniRef50_Q2P196 Ribonuclease E n=28 Tax=Proteobacteria RepID=Q2P196_XANOM Length = 1240 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 184/465 (39%), Positives = 276/465 (59%), Gaps = 12/465 (2%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T +E RVA +DG L +I IE+ ++ NIYKGR++R+ P ++AAFVD G + Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I AG + + T+R EL+R+GQ+++VQV K+ G KGA LTT I Sbjct: 64 RHGFLPLKEIS-RDYFQAGVDHNKSTIR---ELLREGQEIVVQVDKEERGNKGAALTTFI 119 Query: 124 TLPSRYLVFMPGA-SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAE 181 +L RY+V MP + S GVS+RIE E +R LK+ + + + G IIRTA G E Sbjct: 120 SLAGRYMVLMPNSPSAGGVSRRIEGE-DRAALKEALDKLDIPDDMGVIIRTAGVGRDAEE 178 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D YL + W + E + +Y E L R LRD+ A++ I VD+ Y Sbjct: 179 LQWDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYAD 238 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 EF + +P+ KL+HYT P+F+ F +E++I+ A ER V L SGG +++DQTEA+T Sbjct: 239 AQEFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALT 298 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 VD+N+ ++++T F TN+EA + +ARQLRLR+LGG+++IDFIDM + H+R V Sbjct: 299 AVDVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 358 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 + L+ AL DR + + S GL+EM+R+R R S+ CP C G G +++VE++ Sbjct: 359 NKLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLS 418 Query: 422 YEIMREIVRVHHAY--DSDRFLVYASPAVAEALKGEESHSLAEVE 464 I+R V HA ++ + LV A +A L E+ +L E+E Sbjct: 419 LSIIR--VAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIE 461 >UniRef50_B8HA23 Ribonuclease, Rne/Rng family n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HA23_ARTCA Length = 1151 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 165/427 (38%), Positives = 253/427 (59%), Gaps = 10/427 (2%) Query: 15 RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIM 74 ++ ++ G+L E + + + ++GN+Y G+V VLP M+AAFVDIG + A L+A ++ Sbjct: 445 QIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVN 504 Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 + G++ R I ++ G ++VQV KDP+G KGARLT+ I+LP RYLV++P Sbjct: 505 WEAVNLEGKQ------RRIENALKSGDTVLVQVTKDPVGHKGARLTSQISLPGRYLVYVP 558 Query: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194 G S G+S+++ + ER RLK+++ + EQ G I+RTAAEG E EL D L+ W Sbjct: 559 GGSMTGISRKL-PDVERNRLKRILKDRLPEQAGVIVRTAAEGASEEELTHDINRLRAQWE 617 Query: 195 KVMERKKRPQTRYQ--LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE 252 + + + LYGE L +V+RD + + ++ V ++ + + + P+ Sbjct: 618 GIESQSSSTKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTIEAYVTYVAPD 677 Query: 253 MTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG 312 + +LE +T Q IF + ++ +I +ALERKV L SGG L+ID+TEAMT VD+NTG F G Sbjct: 678 LVGRLEKWTKDQDIFAAWRIDEQIHKALERKVFLPSGGSLVIDRTEAMTVVDVNTGKFTG 737 Query: 313 HR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKD 371 NL++T+ N+EA + + RQLRLR++GGII+IDFIDM E +R VL + + L +D Sbjct: 738 SGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMVECLGRD 797 Query: 372 RVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV 431 R K V ++LGLV+MTRKR + V +C C GRG V + V + + Sbjct: 798 RTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGVVTHDDPVEHRRANIVAAE 857 Query: 432 HHAYDSD 438 H + SD Sbjct: 858 QHVHRSD 864 >UniRef50_D1N7U6 Ribonuclease, Rne/Rng family n=2 Tax=Lentisphaerae RepID=D1N7U6_9BACT Length = 544 Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 181/532 (34%), Positives = 285/532 (53%), Gaps = 51/532 (9%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 ++++N E R A ++ G L+E IER+ VG+IY G++ + P +QAAFVDIG + Sbjct: 7 QIILNCEKLERRFALLNNGRLEEYQIERDGNEPKVGDIYLGKIINLEPSLQAAFVDIGAE 66 Query: 64 KAAFLHASDIMPHTE---------------CVAGEEQ----------------------- 85 K AFLH +++P + V+G EQ Sbjct: 67 KNAFLHYHEMLPGCDELLGRRDSDDDDDEKTVSGNEQPIQAKRQKRQEAKPNSKVNQEAL 126 Query: 86 ---KQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVS 142 K+ TV DI + + G +++VQVVK P+ TKGAR+TTDI++ RYLV MP + H+G+S Sbjct: 127 RRKKKLTVADIPNIFKPGMEILVQVVKSPISTKGARVTTDISIAGRYLVLMPYSEHIGLS 186 Query: 143 QRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKV---ME 198 RIE ER+RL+K++A +G G I RT EG D L W K+ M+ Sbjct: 187 TRIEGGQERDRLRKILAALELPEGMGLICRTVGEGRRSTFFKRDLDLLLDNWRKIEKGMD 246 Query: 199 RKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIP-EMTSKL 257 + P LY E L +R +RDF E I VD ++E + + +M K+ Sbjct: 247 TRNAPAL---LYTEPNLVERTIRDFMTEEFQGIVVDDADASCQIIETLNRFGGRKMAEKV 303 Query: 258 EHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLD 317 Y +P+F+ + + ++++ +R+V L GG +++D+TEA+ +D+N+G + Sbjct: 304 TLYNSGKPVFEAYRINDQLREVFQREVRLPGGGAIVVDETEALIAIDVNSGRGRKGADQP 363 Query: 318 DTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSV 377 + I TN+EA + IARQLRLRN+GG++++DFIDM + R V ++++ + DR KT V Sbjct: 364 EFILKTNLEAAEEIARQLRLRNIGGLVVLDFIDMRSARDREEVYRTMKRLVKDDRAKTKV 423 Query: 378 NGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV--HHAY 435 S LGL+EMTR+R ESI+ + CP CHG G VK+V ++ EI R + V Y Sbjct: 424 LPLSRLGLMEMTRQREHESIKDQVFMPCPYCHGSGRVKSVVSMSVEIQRRLNTVLRESRY 483 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 + V P + + L+ E++ L E+E + + +P+ + E+F +V Sbjct: 484 RNRPVRVIMHPDILQRLRNEDALLLRELEEKYKHDLSFRADPMLHSEEFKLV 535 >UniRef50_D2SCS1 Ribonuclease, Rne/Rng family n=39 Tax=Bacteria RepID=D2SCS1_9ACTO Length = 1048 Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 166/410 (40%), Positives = 247/410 (60%), Gaps = 11/410 (2%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ +L E ++ + GN+Y GRV VLP M+AAF+DIG + A L+A ++ Sbjct: 397 TQIAVLEDDVLVEHYVTQAQATSFAGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEV 456 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 ++G++ R I + ++ G ++VQV KDP+G KGARLT + LP R+LV++ Sbjct: 457 NWDAAGLSGKQ------RSIEQALKSGDKVLVQVTKDPIGHKGARLTQQVNLPGRFLVYV 510 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG S G+S+++ ++ER+RLK V+ + E G IIRTAAEG E EL D L+ W Sbjct: 511 PGGSMTGISRKL-PDTERQRLKDVLKKIVPEDAGVIIRTAAEGASEEELTRDVNRLQAQW 569 Query: 194 TKVMERKKRPQTRYQ--LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIP 251 V++RK + LYGE LA RV+RD + + + V ++ + + + P Sbjct: 570 -DVIQRKAESSSNAPSLLYGEPDLAIRVIRDVFNEDFKELVVQGDDAWDTVEAYVAHVSP 628 Query: 252 EMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFV 311 E+ +L +TG +F ++ ++ +AL+RKV L SGG L+ID+TEAMT VD+NTG F Sbjct: 629 ELVGRLTRHTGEGDVFRDLRIDEQLAKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFT 688 Query: 312 GHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSK 370 G NL+ T+ N+EA + I RQLRLR++GGII+IDFIDM E +R VL L + L + Sbjct: 689 GSGGNLEQTVTRNNMEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLGR 748 Query: 371 DRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 DR K V ++LGLV+MTRKR + + V C C GRG V ++ V Sbjct: 749 DRTKHQVAEVTSLGLVQMTRKRVGQGLLEVFSEPCEHCRGRGVVVHIDPV 798 >UniRef50_A0JXK2 Ribonuclease, Rne/Rng family n=4 Tax=Actinomycetales RepID=A0JXK2_ARTS2 Length = 1113 Score = 301 bits (771), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 162/422 (38%), Positives = 249/422 (59%), Gaps = 10/422 (2%) Query: 15 RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIM 74 ++ ++ G+L E + + + ++GN+Y G+V VLP M+AAFVDIG + A L+A ++ Sbjct: 395 QIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVN 454 Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 + G++ R I ++ G ++VQV KDP+G KGARLT+ I+LP RYLV++P Sbjct: 455 WDAVNLEGKQ------RRIENALKSGDSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVP 508 Query: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194 G S G+S+++ + ER RLK+++ + E G I+RTAAEG E EL D L+ W Sbjct: 509 GGSMTGISRKL-PDVERNRLKRILKDRLPEDAGVIVRTAAEGASEEELTHDINRLRAQWE 567 Query: 195 KVMERKKRPQTRYQ--LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE 252 + + + LYGE L +V+RD + + ++ V ++ + + + P+ Sbjct: 568 GIESQATSTKILAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWDTIEAYVTYVAPD 627 Query: 253 MTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG 312 + +LE +T IF + ++ +I +AL+RKV L SGG L+ID+TEAMT VD+NTG F G Sbjct: 628 LVGRLEKWTKDTDIFAAWRIDEQIHKALDRKVFLPSGGSLVIDRTEAMTVVDVNTGKFTG 687 Query: 313 HR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKD 371 NL++T+ N+EA + + RQLRLR++GGII+IDFIDM E +R VL + + L +D Sbjct: 688 SGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMVECLGRD 747 Query: 372 RVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV 431 R K V ++LGLV+MTRKR + V +C C GRG V E V + + Sbjct: 748 RTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGIVTHDEPVEHRRANTVAAE 807 Query: 432 HH 433 HH Sbjct: 808 HH 809 >UniRef50_C7QYR2 Ribonuclease, Rne/Rng family n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QYR2_JONDD Length = 1018 Score = 300 bits (769), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 159/400 (39%), Positives = 242/400 (60%), Gaps = 8/400 (2%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ GIL E ++ ++ + I GN+Y GRV VLP M+AAFVDIG + A L+A ++ Sbjct: 459 TQIAVLEDGILVEHYVSQQEQASIAGNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEV 518 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G+ ++ I E ++ G ++VQV KDP+G KGARLT+ ITL RYLV++ Sbjct: 519 NWDVHGIEGQPRR------IEEALKSGDSVLVQVTKDPIGHKGARLTSQITLAGRYLVYV 572 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG G+S+++ ++ER RLK+++ E DE G I+RTAAEG E EL +D LK+ W Sbjct: 573 PGGGMTGISRKL-PDTERARLKRILKELVDEGSGVIVRTAAEGASETELRADVERLKKQW 631 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 + +++K L GE LA RV+RD + + ++ V + + E+ + P++ Sbjct: 632 AAIEKKRKNANAPALLQGEPDLAIRVVRDIFNDDFTQLSVQGDQAWGEISEYVGDLAPDL 691 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDIN-TGAFVG 312 +K+ +T IF ++ ++ + L+RKV L SGG L+ID+TEAMT +D+N Sbjct: 692 ANKMSRWTSEDDIFAAARIDEQLAKGLDRKVYLPSGGSLVIDRTEAMTVIDVNTGKFTGT 751 Query: 313 HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 L++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R VL L + L +DR Sbjct: 752 GGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDR 811 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 K V ++LGLV+MTRKR + + C C GRG Sbjct: 812 TKHQVAEVTSLGLVQMTRKRVGQGLIEAFSTACDHCSGRG 851 >UniRef50_C8NQN5 Ribonuclease E n=5 Tax=Corynebacterium RepID=C8NQN5_COREF Length = 1148 Score = 300 bits (768), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 168/413 (40%), Positives = 248/413 (60%), Gaps = 20/413 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+V ++ +L E + +++ +VGNIY GRV VLP M+AAF+DIG + L+A ++ Sbjct: 369 TQVGVLEDDLLVEQFVTSDSQSSMVGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEV 428 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G R I + ++ GQ ++VQV KDP+G KGARLTT I+L RYLV++ Sbjct: 429 DWKAAGLGGR------GRRIEQALKSGQKVLVQVTKDPVGHKGARLTTQISLAGRYLVYV 482 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG G+S+++ ER+RLK+++ QGG IIRTAAEGV E +A+D L +W Sbjct: 483 PGGRSAGISRKLPG-PERKRLKEILGRVVPPQGGTIIRTAAEGVSEENIAADVNRLHTLW 541 Query: 194 TKVMER----KKRPQTR-YQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 ++ ER KK TR +Y E + +V+RD + + + VD + + + Sbjct: 542 EQIQERTKQEKKSRNTRPVTMYEEPDMLVKVIRDLFNEDFTSLIVDGDRAWNTVRAYIQS 601 Query: 249 YIPEMTSKLEH-----YTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 P++ S++EH Y G+ F+ F + +++ A+ RKV L SGG LIID+TEAMT + Sbjct: 602 VAPDLVSRVEHFDRADYDGKD-AFEAFGLNTQLEEAMSRKVNLPSGGSLIIDKTEAMTVI 660 Query: 304 DINTGAFVGHR--NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 DINTG +VG NL++T+ NIEA + I RQLRLR++GG+I+IDFIDM ++R VL Sbjct: 661 DINTGRYVGKGVGNLEETVTLNNIEAAEEIVRQLRLRDIGGMIVIDFIDMVLPENRDLVL 720 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L +AL DR + V+ ++LGLV+MTRKR + +EC C GRG V Sbjct: 721 RRLNEALENDRTRHQVSEVTSLGLVQMTRKRIGAGLLETFSSECEHCAGRGLV 773 >UniRef50_D1BDM1 Ribonuclease, Rne/Rng family n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BDM1_SANKS Length = 1265 Score = 300 bits (768), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 154/400 (38%), Positives = 245/400 (61%), Gaps = 8/400 (2%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ G+L E ++ ++++ + GN+Y GRV VLP M+AAF+D+G + A L+A ++ Sbjct: 698 TQIAVLEDGVLVEHYVSQQSQASMAGNVYLGRVQNVLPSMEAAFIDVGKGRNAVLYAGEV 757 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G+ R I + ++ G ++VQV KDP+G KGARLT+ +TL RYLV++ Sbjct: 758 NWDAAGMEGQP------RRIEQALKSGDSVLVQVTKDPIGQKGARLTSQVTLAGRYLVYV 811 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG G+S+++ ++ER RLKK++ E E G I+RTAAEG E EL +D A L+ W Sbjct: 812 PGGGMTGISRKL-PDTERARLKKILREVVPETAGVIVRTAAEGASEEELRADIARLQGQW 870 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 + ++ K L GE LA RV+RD + + + V + + E+ + P++ Sbjct: 871 EAIEKKSKTASAPALLQGEPDLAIRVVRDIFNDDFTSLTVSGDGAWSEISEYVNALAPDL 930 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 +++ +T + +F ++ ++ + ++RKV L SGG L+ID+TEAMT VD+NTG F G Sbjct: 931 AERVKRWTSDKDVFAEARIDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGS 990 Query: 314 RN-LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 L++T+ N+EA + I RQLRLR++GGII++DFIDM E +R VL + + L +DR Sbjct: 991 GGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRMVECLGRDR 1050 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 K V ++LGLV+MTRKR + + C C+GRG Sbjct: 1051 TKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCDHCNGRG 1090 >UniRef50_D2PUT1 Ribonuclease, Rne/Rng family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUT1_9ACTO Length = 1119 Score = 300 bits (768), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 161/402 (40%), Positives = 248/402 (61%), Gaps = 8/402 (1%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A + +L E ++ +E + ++GN+Y GRV VLP M+AAF+DIG + A L+A ++ Sbjct: 541 TQIAVSEDNVLVEHYVAQEEQVSLIGNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEV 600 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 +T + G R I +++ GQ ++VQV KDP+G KGARLT I+LP RY+V++ Sbjct: 601 DWNT--LGGGNGP----RKIESVLKSGQAVLVQVTKDPIGHKGARLTNQISLPGRYVVYV 654 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 P + G+S+++ ++ER RLK ++ + ++ G I+RTAAEG E EL +D + L+ W Sbjct: 655 PRGGNGGISRKL-PDTERSRLKGILKDIVPDEAGVIVRTAAEGATEEELTADVSRLQAYW 713 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 + ++ K Q L+GE L RV+RD + ++ + ++ + E+ S P + Sbjct: 714 EDIDKKSKSGQAPQLLHGEPDLLIRVVRDLFTEDFAKLVISGDDAFDQVSEYVSAVAPHL 773 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 ++ +TG +F F ++ +I++AL+RKV L SGG LIID+TEAMT VD+NTG F G Sbjct: 774 AERVAKWTGDGDVFANFRIDEQIKKALDRKVWLPSGGSLIIDRTEAMTVVDVNTGKFTGS 833 Query: 314 -RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R VL L + L +DR Sbjct: 834 GGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDR 893 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 K V ++LGLV+MTRKR + C C GRG + Sbjct: 894 TKHQVAEVTSLGLVQMTRKRIGTGLLEAFGENCDHCGGRGLI 935 >UniRef50_D2NSV3 Ribonuclease G and E n=2 Tax=Rothia mucilaginosa RepID=D2NSV3_9MICC Length = 1288 Score = 299 bits (766), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 160/414 (38%), Positives = 247/414 (59%), Gaps = 10/414 (2%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 ++LV ++ ++ G+L E + + + ++GN+Y G+V VLP M+AAFVDIG Sbjct: 420 QMLVRQKDGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRG 479 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + A L+A ++ + G R I ++ G ++VQV KDP+G KGARLT+ + Sbjct: 480 RNAVLYAGEVNWDVTGLDG------APRKIENALKPGDSVLVQVTKDPIGHKGARLTSQV 533 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELA 183 +LP R+LV++PG S G+S+++ ++ER RLKK++ + E G I+RTAAEG E EL Sbjct: 534 SLPGRFLVYVPGGSMTGISRKL-PDTERARLKKILKDKLPEGAGVIVRTAAEGASEEELT 592 Query: 184 SDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 D L+ W ++ E+ K + LY E L + +RD + + + V +++ Sbjct: 593 HDINRLRAQWEEIQEKAKSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTAMIVQGENAWDS 652 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + + + P++ S+L+ + G +FD + + ++ +AL+RKV L SGG L+ID+TEAMT Sbjct: 653 IEAYVTYVAPDLVSRLQQWDGDDDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEAMT 712 Query: 302 TVDINTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 VD+NTG F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R V Sbjct: 713 VVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLV 772 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L L + L +DR K V ++LGLV+MTRKR + V C C GRG V Sbjct: 773 LRRLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEPCEHCAGRGLV 826 >UniRef50_C3W9J7 Ribonuclease G and E n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3W9J7_FUSMR Length = 488 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 178/456 (39%), Positives = 283/456 (62%), Gaps = 12/456 (2%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 ++++N+ ++R A I+ + E+ IERE R I NIYKG+V+ VLPGM++AFV+IGL+ Sbjct: 3 QIVINIDEFQSRAAIIEDEKVVEVLIEREEERRINANIYKGKVANVLPGMESAFVNIGLE 62 Query: 64 KAAFLHASDIM----PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 K AFL+ +D+ + + + E R I +++ G +++VQV+ +P GTKGAR+ Sbjct: 63 KNAFLYVNDLREFEEKYLDGICNSE------RPIEDILTVGDEVVVQVLSEPRGTKGARV 116 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 TT T+P +YLV MP +H+ +S++I+ E ER RL+++V + E G IIRTAA+G Sbjct: 117 TTHYTIPGKYLVLMPNNNHIAISKKIKEEEERNRLEEIVRDLKPENMGVIIRTAAQGKSI 176 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + YL + W + ++ + LY + + VLRD E+D + +D+ Y Sbjct: 177 FHFEREMEYLVKKWEDIEKKTSTAKIGEVLYKDNGIVATVLRDIFSNEIDELVIDNEEVY 236 Query: 240 EALLEFTSEYIPE-MTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 ++++ + + + + +K++ Y + IF+ + +E EI+ AL+ +V L+ GGYL+I +T Sbjct: 237 WEVIDYINAFSEKTLKTKIKLYNDDEIGIFERYGIEKEIENALKEEVRLECGGYLVIQKT 296 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+ ++D+NTG G NL+ T+ NTN+EA + I RQLRLRNLGGIIIIDFIDM E+ + Sbjct: 297 EALISIDVNTGKNTGSYNLEQTVLNTNLEAAREIPRQLRLRNLGGIIIIDFIDMRLEEDK 356 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 +VL +LEQ LSKDR+K ++ F+ LGL+EMTRKRT + + + CP C G G +K+ Sbjct: 357 LKVLEALEQNLSKDRIKNNIVHFTDLGLIEMTRKRTGKPLYNYFQERCPMCEGTGKIKSK 416 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALK 453 ++V +E+M EI D + V S + A K Sbjct: 417 DSVIHEMMTEIKECAKDEDINIIKVILSKKLKIAFK 452 >UniRef50_C0VZF1 Ribonuclease E n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZF1_9ACTO Length = 819 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/411 (38%), Positives = 248/411 (60%), Gaps = 9/411 (2%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E++V ++A ++ G+L E ++ R ++ +VGNIY GRV VLP M+AAFVD+G Sbjct: 184 EMIVREQNGLNQIAVLEDGLLVEHYVARRTQQTMVGNIYLGRVQNVLPSMEAAFVDLGKG 243 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + A L+A ++ +AG R I + ++ G ++VQV KDP+G KGARLT+ I Sbjct: 244 RNAVLYAGEVNWEAVGLAGRP------RRIEQALKSGDTVLVQVTKDPIGHKGARLTSQI 297 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELA 183 TL RYLV +P G+S+++ E ER RLKK++++ + G I+RTAAEG E +L Sbjct: 298 TLAGRYLVLVPAGQMTGISRKL-PERERTRLKKLLSKIVPKDYGVIVRTAAEGATEEQLR 356 Query: 184 SDAAYLKRVWTKVMERKKRPQ-TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D L+ W ++ +++K+ Q L E LA RV+RD + + V T++ + Sbjct: 357 DDVTRLQAQWEEIEKKQKKTQKVPVLLRSEPELAVRVVRDVFTEDFQSLTVQGEETWQTV 416 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 E+ E P++ +L + ++ +F + ++ ++ + ++RKV L SGG L+ID+TEAMT Sbjct: 417 QEYVDELAPDLRDRLRRWVNKEDVFTVHRIDEQLTKGMDRKVWLPSGGSLVIDRTEAMTV 476 Query: 303 VDINTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+NTG F+G L++T+ N+EA + I RQLRLR++GGI++IDF+DM E +R VL Sbjct: 477 IDVNTGKFIGSGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVLESNRDLVL 536 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 L + L +DR + V ++LGLV+MTRKR E + C C GRG Sbjct: 537 RRLVECLGRDRTRHQVTEITSLGLVQMTRKRVGEGLVEAFSTPCECCDGRG 587 >UniRef50_C0ZAL2 Putative ribonuclease G n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAL2_BREBN Length = 491 Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 165/476 (34%), Positives = 274/476 (57%), Gaps = 9/476 (1%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 ++ ++ R+A+++ G LQE + VG+IY+GR++ V PG+Q+AFVDIG Sbjct: 3 QVAISTQGGSIRIAFMENGKLQEWRTQDVRSHASVGDIYQGRIADVKPGIQSAFVDIGTG 62 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + A+L+ D + G E +I+E V GQ ++VQV K+ + K ++T I Sbjct: 63 QNAYLYVDDTV-------GVESGGTAKPNIAERVHVGQKVLVQVSKEAMEMKAPKITMRI 115 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELA 183 +L RYLV++P + +S++I +++R+RL++V++ ++ G I+RT A E L Sbjct: 116 SLQGRYLVYLPTEESISLSRKISDDTKRKRLQQVISSTVEQGEGCILRTEAAEAEEQTLI 175 Query: 184 SDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL 243 + YL+ W + + ++ +++ + L + LRD +D + V+ T++ + Sbjct: 176 RELTYLRNRWQDMRRTAEGLRSTGRIFQDAELIEVALRDGLANGMDELLVEGAATHQQVK 235 Query: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 + + PE+ KL Y G+QP+FD VE E+ RA +R+V LKSGG L+ID+TEAMT + Sbjct: 236 AALAAFAPEVQEKLRWYQGKQPLFDYLGVEAELIRARDRQVPLKSGGSLVIDRTEAMTVI 295 Query: 304 DINTGAFVGH--RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 D+NTG+F G + + + TN+EA IARQLRLR++GGI+IIDFIDM + ++ RV+ Sbjct: 296 DVNTGSFTGAGGQQREQAVTATNLEAVAEIARQLRLRDIGGIVIIDFIDMKEQGNKERVI 355 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 L+Q L+KD V ++V G ++LGLVEMTRKR R S+ L C C GRG V V+ + Sbjct: 356 SRLKQELAKDPVPSTVLGMTSLGLVEMTRKRVRASLMERLTEPCEACAGRGRVWRVDELL 415 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 + E+ + + D++ LV P + + ++ E + V K++ + P Sbjct: 416 RRLYVEVTALAKSQDAEAALVDMPPRLLDMIEAWEKAEAVTWPVHVYKRLVPSMSP 471 >UniRef50_C7NH23 RNAse G n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NH23_KYTSD Length = 959 Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 168/402 (41%), Positives = 249/402 (61%), Gaps = 7/402 (1%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+V ++ G+L E +I+R+ + +VGN+Y GRV VLP M+AAFVDIG + L+A ++ Sbjct: 327 TQVGVLEDGVLVEHYIDRQQQTTMVGNVYLGRVQNVLPSMEAAFVDIGKGRNGVLYAGEV 386 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + EQK+ I ++ GQ ++VQV KDP+G KGARLT I+LP RYLV++ Sbjct: 387 NWDAAGLPKGEQKR-----IESALQPGQPVLVQVTKDPIGHKGARLTGQISLPGRYLVYV 441 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG + G+S+++ ++ER RLKK++ + G I+RTAAEG EAEL +D L W Sbjct: 442 PGNTTTGISRKL-PDTERARLKKILKDVVPADAGVIVRTAAEGAAEAELRADVERLTTQW 500 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 ++ + + ++GE L RV+RD + + ++ V +E++ + P++ Sbjct: 501 ERIAAAQAKGSAPTLVHGEPDLTVRVIRDVFNEDFTKLVVSGPTAWESVTSYIDAVAPDL 560 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 T KLE + G Q +F+ +E +I +A++RKV L SGG LI D+TEAMT VD+NTG FVG Sbjct: 561 TPKLERWEGEQDVFEHHRIEEQIAKAMDRKVWLPSGGSLIFDRTEAMTVVDVNTGKFVGS 620 Query: 314 -RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 NL++T+ NIEA + I RQLRLR++GGII++DFIDM E +R V+ L + L++DR Sbjct: 621 GGNLEETVTKNNIEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVVRRLVECLARDR 680 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 K V ++LGLV+MTRKR + V C C G G V Sbjct: 681 TKHQVAEVTSLGLVQMTRKRVGSGLVEVYGETCEHCDGHGLV 722 >UniRef50_D0WNB8 Putative S1 RNA binding domain protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WNB8_9ACTO Length = 940 Score = 296 bits (759), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 161/413 (38%), Positives = 246/413 (59%), Gaps = 9/413 (2%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E+L+ ++A ++ +L E ++ R + +VGN+Y GRV VLP M+AAFVDIG Sbjct: 330 EMLIREQDGLNQIAVLEDDVLVEHYVARHTQVSMVGNVYLGRVQNVLPSMEAAFVDIGKG 389 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + A L+A ++ + G R I + ++ G ++VQV KDP+G KGARLT I Sbjct: 390 RNAVLYAGEVNWEAAGLEGR------PRRIEQALKSGDTVVVQVTKDPIGHKGARLTAQI 443 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELA 183 TL R+LV +P + G+S+++ + ER+RLK+++ E + G I+RTAAEG E +L Sbjct: 444 TLAGRHLVLVPSGAMTGISRKL-PDKERQRLKRLLREIVPAEHGVIVRTAAEGTSEDQLR 502 Query: 184 SDAAYLKRVWTKVMERKKRPQTRYQLY-GELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 +D L + W + + K + L GE LA RV+RD + + +++ + + Sbjct: 503 ADVERLAKTWQDIQTKAKNTKGAPMLLKGEPELAVRVVRDIFNEDFQSLKIQGAKAWRTI 562 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 E+ +E PE++ +LEH+TG IF V+ ++ +A +RKV L SGG L+ID+TEAMT Sbjct: 563 SEYVAELSPELSQRLEHWTGASDIFASHRVDEQLAKAFDRKVWLPSGGTLVIDRTEAMTV 622 Query: 303 VDINTGAFVGHRN-LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+NTG F G L++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R VL Sbjct: 623 IDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRELVL 682 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L + L +DR + V ++LGLV+MTRKR + + C C GRG + Sbjct: 683 RRLVECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSTVCEACEGRGYI 735 >UniRef50_D1BV45 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycetales RepID=D1BV45_XYLCX Length = 1043 Score = 296 bits (759), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 158/402 (39%), Positives = 243/402 (60%), Gaps = 9/402 (2%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ G+L E ++ ++++ +VGN+Y GRV VLP M+AAFVD+G + A L+A ++ Sbjct: 564 TQIAVLEDGVLVEHYVSQQSQSSMVGNVYLGRVQNVLPSMEAAFVDVGKGRNAVLYAGEV 623 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G + ++ I + ++ G ++VQV KDP+G KGARLT+ +TL RYLV + Sbjct: 624 NWDAAGLDGGQPRR-----IEQALKSGDSVLVQVTKDPIGHKGARLTSQVTLAGRYLVLV 678 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG G+S+++ + ER RLKKV+ + E G I+RTAAEG E EL +D L+ W Sbjct: 679 PGGGMTGISRKL-PDVERNRLKKVLRDIVPEGAGVIVRTAAEGASEEELRADVERLQNQW 737 Query: 194 TKVMERKKRPQTRYQ--LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIP 251 T + + R T L GE LA RV+RD + + + V ++ + + E P Sbjct: 738 TGITTKAGRASTSAPALLQGEPDLAIRVVRDIFNDDFSSLIVQGDGAWQEVAGYVEELAP 797 Query: 252 EMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFV 311 ++ ++ +T +F + V+ ++ + ++RKV L SGG L+ID+TEAMT +D+NTG F Sbjct: 798 DLRERVTSWTENTDVFSVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFT 857 Query: 312 GHRN-LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSK 370 G L++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R VL L + L + Sbjct: 858 GAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGR 917 Query: 371 DRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 DR K V ++LGLV+MTRKR + + C C GRG Sbjct: 918 DRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCKGRG 959 >UniRef50_C8XF15 Ribonuclease, Rne/Rng family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XF15_NAKMY Length = 1080 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 162/407 (39%), Positives = 245/407 (60%), Gaps = 14/407 (3%) Query: 15 RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIM 74 +VA ++ GIL E + + ++G+++ G+V VLP M+AAFVDIG + A ++A ++ Sbjct: 380 QVALLEDGILVEHFVSQTGADSLIGSVFLGKVQNVLPSMEAAFVDIGRGRNAVIYAGEVN 439 Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 + G+ R I + G ++ QV KDP+G KGARLTT I+LP R+LV++P Sbjct: 440 WDAAGLGGK------ARRIESALSSGDTILAQVSKDPVGHKGARLTTQISLPGRFLVYVP 493 Query: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194 G G+S+++ ++ER+RLK ++ E G IIRTAAEGV E ELA D LK W Sbjct: 494 GGGATGISRKL-PDTERKRLKAILDRIVPEDAGVIIRTAAEGVSEEELARDVERLKAQWE 552 Query: 195 KVMERKK-RPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYI--- 250 ++ R + + LY E +V+RD +++++R+ VD + + S+Y+ Sbjct: 553 EISRRAQAKGSAPTLLYAEPGTLIKVVRDLFNSDINRLVVDGDAGNDTVWGPVSDYVNAV 612 Query: 251 -PEMTSKLEHYT-GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTG 308 PE+ +L + Q +F + ++ +I +ALERKV L SGG L+ID+TEAMT VD+NTG Sbjct: 613 APELADRLVRWDHDGQDVFANYRIDEQIAKALERKVHLPSGGSLVIDRTEAMTVVDVNTG 672 Query: 309 AFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQA 367 + G NL++T+ N+EA + I RQLRLR++GGII++DFIDM E +R V+ L +A Sbjct: 673 KYTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRELVMRRLTEA 732 Query: 368 LSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L +DR + V ++LGLV+MTRKR + CP C GRG V Sbjct: 733 LGRDRTRHQVAEVTSLGLVQMTRKRMGTGLVEAFSEPCPHCGGRGIV 779 >UniRef50_C0XRI1 Ribonuclease E (Fragment) n=2 Tax=Corynebacterium RepID=C0XRI1_9CORY Length = 743 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 159/411 (38%), Positives = 247/411 (60%), Gaps = 17/411 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+V ++ G+L E + + ++GNIY GRV VLP M+AAF+DIG ++ L+A ++ Sbjct: 252 TQVGVLEDGVLAEHFVTSDQNASMIGNIYLGRVQNVLPSMEAAFIDIGQNRNGVLYAGEV 311 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G R I + ++ G +MVQV KDP+G KGARLTT I+L RYLV++ Sbjct: 312 DWKAAGLGGRS------RRIEQALKSGDQVMVQVTKDPVGHKGARLTTQISLAGRYLVYV 365 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG G+S+++ + ER+RLK+++A+ +GG IIRTAAEGV E +A+D L W Sbjct: 366 PGGRSAGISRKLPA-PERKRLKEILAKVVPGKGGAIIRTAAEGVSEEAIAADVTRLHNQW 424 Query: 194 TKVMERKKRPQTR-----YQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 + E+ +R ++ LY E L +V+RD + + ++ VD + + + + S Sbjct: 425 ETLQEQAEREKSSKGAKPVTLYEEPNLLVKVVRDLFNEDFSKLIVDGKRPWNTVHAYVSS 484 Query: 249 YIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 P++ +L Y Q F+ + V+ +IQ+AL R V L SGG L+ID+TEAMT +D Sbjct: 485 VAPDLEDRLVRYDRAAHDGQDAFEAYRVDEQIQKALSRTVWLPSGGTLVIDRTEAMTVID 544 Query: 305 INTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG F G +L++T+ N+EA + I RQ+RLR++GG+II+DFIDM +++ VL Sbjct: 545 VNTGKFTGSGGSLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMILPENQELVLRR 604 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L++AL +DR + V+ ++LGLV+MTRKR + C C GRG + Sbjct: 605 LKEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFSTPCECCGGRGII 655 >UniRef50_D2LS23 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LS23_BACS4 Length = 456 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 157/431 (36%), Positives = 260/431 (60%), Gaps = 8/431 (1%) Query: 41 IYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQG 100 ++ GRV ++PGM+AAFV+IG DK FL+ ++++ + + + +++ I+ ++++G Sbjct: 1 MFIGRVEDIVPGMEAAFVNIGADKNGFLYRNELIAY-DTLKDDKEPDVKQPTIASMLKEG 59 Query: 101 QDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE 160 Q ++VQV K+ +G KG RLT I+LP +Y+V++P ++V VS+++ E+ R+ ++ E Sbjct: 60 QSIIVQVTKEAVGAKGVRLTEKISLPGKYIVYLPYGNYVAVSKKMNEEN-RKGWREKARE 118 Query: 161 YCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVL 220 + +++ G IIRT AE E+ + L+ +++++ ++ L + +L RV Sbjct: 119 WIEDREGIIIRTNAEDASHEEIYHEFTLLRHQHQQMLQQAEKVNVPNVLLNQSSLISRVQ 178 Query: 221 RDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRAL 280 RD+ + I VD +YE LL + E + Y ++ IF +D+E +++AL Sbjct: 179 RDYLTNKNSEIVVDHFESYEQLLNSSLE-----GCNIHLYQEKEDIFSYYDIEKHLEKAL 233 Query: 281 ERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNL 340 KV LKSGG+LII++TEA+T +D+NTG F G NL DT+ TNIEA A+A+QLRLRN+ Sbjct: 234 HEKVWLKSGGFLIIEKTEALTVIDVNTGKFTGKHNLRDTVVKTNIEAAYAVAQQLRLRNI 293 Query: 341 GGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 GGII+IDFIDM E ++ VL +L++A DR T+V GF+ GLVEMTRK+ R+ + + Sbjct: 294 GGIILIDFIDMKVESDQKSVLKALKEATKNDRTLTNVAGFTNFGLVEMTRKKARKPLHDI 353 Query: 401 LCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSL 460 + C C G G V ++++ + RE+ + + D D LV AV E+L + L Sbjct: 354 MMESCSVCKGTGQVLSLKSKIAHLEREVFALRYI-DQDAILVEVDSAVYESLLQNNNDLL 412 Query: 461 AEVEIFVGKQV 471 +E V K + Sbjct: 413 TSMEQVVNKTI 423 >UniRef50_B2GGD5 Putative ribonuclease n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GGD5_KOCRD Length = 1145 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 164/411 (39%), Positives = 246/411 (59%), Gaps = 10/411 (2%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 +LV ++ ++ GIL E + + ++GN+Y G+V VLP M+AAFVDIG + Sbjct: 334 MLVRQKEDRIQIGVLEDGILAEHFVSHTTQDSLIGNVYVGKVQNVLPSMEAAFVDIGRGR 393 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 A L+A ++ + A E R I ++ G ++VQV KDP+G KGARLT+ ++ Sbjct: 394 NAVLYAGEV----DWDAAE--MGHKPRKIENALKSGDTVLVQVTKDPVGHKGARLTSQVS 447 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 LP RYLV++PG S G+S+++ + ER+RLKK++ + E G I+RTAAEG E EL + Sbjct: 448 LPGRYLVYVPGGSMTGISRKL-PDVERQRLKKILKDRLPEGAGVIVRTAAEGASETELTN 506 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQ--LYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D L+ W ++ E+ +T LY E L + +RD + + + V ++ + Sbjct: 507 DINRLRSQWEQIQEKAGSTKTLAPELLYAEPDLTIKTVRDVFNEDFTAMVVQGEQAWDNI 566 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + + P++ +L+ +T + +F+ VE +IQ+ALERKV L SGG L+ID+TEAMT Sbjct: 567 EAYVTYVAPDLLDRLQRWTEDEDLFEHMRVEEQIQKALERKVFLPSGGSLVIDRTEAMTV 626 Query: 303 VDINTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 VD+NTG F G NL++T+ N+EA + I RQLRLR++GGII++DFIDM E +R VL Sbjct: 627 VDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVL 686 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 L + L +DR K V ++LGLV+MTRKR + V C C GRG Sbjct: 687 RRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFSEPCEECAGRG 737 >UniRef50_C7LYB0 Ribonuclease, Rne/Rng family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYB0_ACIFD Length = 457 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 165/416 (39%), Positives = 246/416 (59%), Gaps = 10/416 (2%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIER--EARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++ V+V T VA ++G L + + R + +VGNIY GRV VLPGM+AAF+DIG Sbjct: 38 QMAVHVHGDVTHVAILEGRSLIQHAVSRASDTETSVVGNIYLGRVVNVLPGMEAAFIDIG 97 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 K A L+ D+ E + G I +L+R Q ++ Q VK+P+ KGARLT Sbjct: 98 TAKNAVLYRGDVRYEREDLEGLGDGA----RIEQLLRPKQVIVCQAVKNPIAHKGARLTQ 153 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 +++LP R+ V +PG VG+S+R+ + ER RL+ +V + E G I+RTAAEG AE Sbjct: 154 EVSLPGRFAVLVPGQRSVGISKRL-PDQERRRLRGLVEDLVPEGFGVILRTAAEGATRAE 212 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D L +W ++ E + LY E A RV+R+ E + +D R YE Sbjct: 213 LERDITQLVGMWQRIDELARTEHAPALLYQEPPAAVRVIREEFSQEFRSVAIDDRALYED 272 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQ---PIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + + PE+ ++E+Y PIF + V++++ +ALER V L SGG L+ID+ E Sbjct: 273 VARYVQTISPELADRVEYYDAEAEGVPIFQRYHVQHQLAKALERTVWLPSGGSLVIDRAE 332 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +D+NT VG +L++TI N+EA + IARQLRLR++GGII+ID +DM + +R Sbjct: 333 ALTVIDVNTARNVGAVSLEETIHRNNLEAVEEIARQLRLRDIGGIIVIDVVDMVDPQNRD 392 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 V+ + AL++D+ +T V S LGL++MTR+R E + L + CPTCHG+G V Sbjct: 393 DVMRAFRAALARDKTRTHVYDMSPLGLIQMTRQRISEGLVESLSSTCPTCHGQGYV 448 >UniRef50_C7MPQ3 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycetales RepID=C7MPQ3_SACVD Length = 1093 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 163/407 (40%), Positives = 239/407 (58%), Gaps = 13/407 (3%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++ ++ G+L E + IVGN+Y GRV VLP M+AAF+DIG + A L+A ++ Sbjct: 507 TQIGVLEDGVLVEHFVTSSDSGSIVGNVYLGRVQNVLPSMEAAFIDIGRGRNAVLYAGEV 566 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 AG E K R I + + G ++VQV KDP+G KGARLTT I+LP R+LV++ Sbjct: 567 ---DWDAAGLEGK---ARKIEQALTTGDHVLVQVTKDPVGHKGARLTTQISLPGRFLVYV 620 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 P G+S+++ E+ER RLK ++ G IIRTA+EG+ E ELA D LK W Sbjct: 621 PSGGATGISRKL-PENERRRLKDILKRIVPSDAGVIIRTASEGISEEELARDVRRLKAQW 679 Query: 194 TKVMERK-----KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 + E+ K+ LY E L +V+RD + ++ V +E + + Sbjct: 680 EVIKEKAEAASAKKSGAPALLYQEPDLLVKVIRDLFTEDFKKLVVQGDTAWETIRNYVEH 739 Query: 249 YIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTG 308 P++ ++E Y G +F + ++ ++ +AL+RKV L SGGYL+ID+TEAMT +D+NTG Sbjct: 740 VAPDLLDRVERYVGTGDVFADYRIDEQLMKALDRKVWLPSGGYLVIDRTEAMTVIDVNTG 799 Query: 309 AFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQA 367 F G NL++T+ N+E+ + I RQLRLR++GGII+IDFIDM E +R VL L + Sbjct: 800 KFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTEC 859 Query: 368 LSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 LS+DR + V ++LGLV+MTRKR + C C GRG + Sbjct: 860 LSRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAFSTTCEHCKGRGVI 906 >UniRef50_A4F9K3 Ribonuclease, Rne/Rng family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F9K3_SACEN Length = 1075 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 159/413 (38%), Positives = 243/413 (58%), Gaps = 10/413 (2%) Query: 13 ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASD 72 +T++A ++ +L E + +VGN+Y GRV VLP M+AAFVDIG + A L+A + Sbjct: 413 QTQIAVLEDNVLVENFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYAGE 472 Query: 73 IMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVF 132 + +AG+ R I + + G ++VQV KDP+G KGARLTT I+LP R+LV+ Sbjct: 473 VDWDAAGLAGK------ARRIEQALSTGDSVLVQVTKDPVGHKGARLTTQISLPGRFLVY 526 Query: 133 MPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRV 192 +PG G+S+++ ++ER+RLK+++ E G IIRTA+EG E L D L+ Sbjct: 527 VPGGGATGISRKL-PDNERKRLKEILKRIVPENAGVIIRTASEGTSEEALDRDVRRLQAQ 585 Query: 193 WTKVMERKKRPQTRYQ--LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYI 250 W + E+ P+ + LY E L +V+RD + + V ++ + + Sbjct: 586 WEVIKEKADSPKAQAPQLLYEEPDLLIKVVRDLFTEDFSAMAVQGNQAWDTIEAYVKHVA 645 Query: 251 PEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAF 310 P++ +L + G+ +F + +I +AL+RKV L SGGYL+ID+TEAMT +D+NTG F Sbjct: 646 PDLAGRLSKHVGKNDVFTEQRISEQIAKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKF 705 Query: 311 VGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALS 369 G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R VL L + L Sbjct: 706 TGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLTECLG 765 Query: 370 KDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +DR + V ++LGLV+MTRKR + + C C GRG + + + V + Sbjct: 766 RDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAYSSTCEHCRGRGLLVSTDPVTH 818 >UniRef50_B0K422 Ribonuclease, Rne/Rng family n=12 Tax=Thermoanaerobacterales RepID=B0K422_THEPX Length = 474 Score = 295 bits (754), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 170/446 (38%), Positives = 271/446 (60%), Gaps = 12/446 (2%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 L++++ + +++A ++ G L+E H E+ + I+GNIYKG++ VL GMQAAFVDIG+ K Sbjct: 4 LILDIDENLSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDIGIGK 63 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 AFL D++ E + + I+++++ GQ +MVQV K+ +G K R+T +I+ Sbjct: 64 NAFLFFDDVLFQQENLP---------KSITQVLKPGQPIMVQVSKEAVGMKNPRVTANIS 114 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 LP +Y+V MP ++G+S RIE E ER+RL+++V + E G I+RTAA E ++ Sbjct: 115 LPGKYVVLMPNVDYIGISHRIEEEVERKRLQEIVKKLKPEGIGIIVRTAALEATEQQIRE 174 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 D L R++ K+ + + +Y E A + LRD E+D I V+ + YE + Sbjct: 175 DLEELIRLYEKIQKDFQNAPLPSLIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENIKR 234 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 + E S + + G + ++ + ++ + LE+KV LKSGG++IIDQTEA+T +D Sbjct: 235 YLKNVGKENIS-VTYEEG--DLLGIYGADFQVDKLLEKKVWLKSGGFVIIDQTEALTVID 291 Query: 305 INTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSL 364 +NTG +VG +L++TI+ TN+EA + IA QL+LR++GGIIIIDFIDM NE+ +R +L Sbjct: 292 VNTGKYVGKSSLEETIYKTNLEAAEEIALQLKLRDIGGIIIIDFIDMKNENFKRDLLEFF 351 Query: 365 EQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEI 424 ++ L KDR K +V G++ LGLVEMTRKR R + L +CP C G G V + E + + Sbjct: 352 KRELQKDRTKCTVLGYTQLGLVEMTRKRVRSQVGSYLKEKCPICEGEGMVYSTEYIYRRL 411 Query: 425 MREIVRVHHAYDSDRFLVYASPAVAE 450 I RV ++ + + + V + Sbjct: 412 RNNIERVLRHVNARKIYIKGNDKVVK 437 >UniRef50_A6CTK6 Cytosolic axial filament protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CTK6_9BACI Length = 494 Score = 294 bits (753), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 157/481 (32%), Positives = 278/481 (57%), Gaps = 9/481 (1%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 ++VN E R A + GI++ H+ + + I GNIY GRV +V G+ AAF++IG K Sbjct: 13 IIVNALGREKRWARLRDGIMESFHVYQPEKESIAGNIYIGRVDKVEKGLNAAFINIGEGK 72 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 FLH D+ + ++K+ +I+ L+ QGQ L+VQV KDP GTKG R+T I Sbjct: 73 NGFLHIEDLAEYMLL----DEKERKTAEINRLLHQGQKLIVQVKKDPAGTKGPRVTGIIE 128 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 + LV++P + VS++ SE ++++ ++ + +E+ G + RTAA G E E+ + Sbjct: 129 MKGTSLVYLPHGRYTAVSKKASSEEQKKKWRRFGSRIKEEEEGIVFRTAALGKAEKEIQN 188 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 + LK+ + ++ + + L+ + + + +L + + I D E Sbjct: 189 EYLGLKKQYQELYSSSLSKKAPFLLHRQDVMKEDILEEIKKVKQAEIITDDYSWKNEFQE 248 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 F + ++ H+ + IF + VE +I++A+++ V L +G ++I+ TEA+T +D Sbjct: 249 FLHNNKASLGGEITHFQSHENIFVHYRVETQIEKAMKKVVWLDNGATIVIEPTEALTVID 308 Query: 305 INTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSL 364 +NTG F G +L T+ TN A + IARQL++RNL GII+IDFI+M +E H+ V+++L Sbjct: 309 VNTGKFTGKSDLSQTVLKTNELAAKEIARQLKIRNLSGIILIDFIEMKSEQHQTEVVNAL 368 Query: 365 EQALSKDRVKTSVNGFSALGLVEMTRKRTRES-IEHVLCNECPTCHGRGTVKTVETVCYE 423 ++ L +D +T++ GF+ LG++++TRK+T+ +E++ C CP C G G V++ E++ Y+ Sbjct: 369 KEGLKEDGKRTTIVGFTELGILQLTRKKTKPPLLEYISCR-CPICSGYGMVESAESMAYK 427 Query: 424 IMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 + RE+ ++ A D D+ ++ A+ V + KGE S L E+E + K K++ +P+ Sbjct: 428 LERELYELYPA-DEDKVIIEATEDVQKVFKGESSQYLKEMEKSINK--KIEFQPVSQSHP 484 Query: 484 F 484 F Sbjct: 485 F 485 >UniRef50_A8ZW09 Ribonuclease, Rne/Rng family n=2 Tax=Desulfobacteraceae RepID=A8ZW09_DESOH Length = 499 Score = 294 bits (753), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 160/430 (37%), Positives = 257/430 (59%), Gaps = 8/430 (1%) Query: 1 MTAELLVN-VTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT ++L+N V E R+A + L E H+E +R NIYKG V+RV P +QA FVD Sbjct: 1 MTDKILINAVDTEECRIARVKDNRLCEFHLETTSRVTTKSNIYKGLVARVEPSLQAVFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G ++ FL DI HT+ + + ++RD L++ GQ+++VQVVKDP+ KGA L Sbjct: 61 YGEERHGFLQKHDI--HTDYFQ-DSKVDGSIRD---LIKPGQEMLVQVVKDPIMHKGAAL 114 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 TT +++P R+ V MPG+ GVS++IE E ER+RLK++V+ E G I+RTAA+G Sbjct: 115 TTFLSIPGRFCVLMPGSVTKGVSKQIEDEEERKRLKEIVSGLRVPENFGVILRTAAKGAA 174 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + +A D +YL R+W + + + ++ E A R +RD+ A++ I +D Sbjct: 175 KTVIAKDLSYLMRLWKTIKKEGMNQKAPAAIHKERDFAVRAIRDYLTADIQEILIDEPAV 234 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 ++ + +F + P+ + Y G +PIF ++E++I+ E +V+L SGG +++ QTE Sbjct: 235 HQEVKDFVALVSPKHAKIVRLYQGAKPIFTKHELESQIESIFENRVQLPSGGSIVLTQTE 294 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ ++D+N+G ++++T TN+EA + IARQLRLR++GG+I+IDFIDM + Sbjct: 295 ALVSIDVNSGKSRQKHSIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMKPRKNNA 354 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V +L+ + +D+ +T V S GL+EM+R+R R+SIE C C GRG V E Sbjct: 355 AVERALKAHVKEDKARTDVGKISKFGLLEMSRQRLRQSIETSSMVTCGHCGGRGYVMATE 414 Query: 419 TVCYEIMREI 428 + ++R + Sbjct: 415 KLGINVLRRL 424 >UniRef50_A8L1W0 Ribonuclease, Rne/Rng family n=25 Tax=Actinobacteridae RepID=A8L1W0_FRASN Length = 1427 Score = 294 bits (752), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 158/400 (39%), Positives = 238/400 (59%), Gaps = 8/400 (2%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ G+L E + R + GN+Y GRV VL M+AAFVDIG + A L+A ++ Sbjct: 789 TQIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDIGKGRNAVLYAGEV 848 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G +K I ++++ GQ ++VQV KDP+G KGARLT+ ++LP RYLV++ Sbjct: 849 NYDASGLDGRPRK------IEQVLKSGQSVLVQVSKDPIGHKGARLTSQVSLPGRYLVYV 902 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 P + G+S+++ ++ER RLK ++ + E GG I+RTAAEG EAEL D L W Sbjct: 903 PDGQNAGISRKL-PDTERARLKSILKKITPENGGVIVRTAAEGASEAELERDIERLVAQW 961 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 + + ++ LYGE L RV+RD + + + V + + P++ Sbjct: 962 EDIQRKAQKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSHEAATVEGYVDTVAPDL 1021 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 ++ Y G +F V+ ++ +AL+RKV L SGG L+ID+TEAMT +D+NTG F G Sbjct: 1022 RDRVRRYVGTGDVFAEHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGK 1081 Query: 314 -RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R VL L + L +DR Sbjct: 1082 GGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDR 1141 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 + V ++LGLV+MTRKR + + C C+GRG Sbjct: 1142 TRHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCAHCNGRG 1181 >UniRef50_C9RQU1 Ribonuclease, Rne/Rng family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQU1_FIBSS Length = 511 Score = 294 bits (752), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 165/438 (37%), Positives = 259/438 (59%), Gaps = 14/438 (3%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 +L++ TP E R+A ++ G L E+ +E + ++GNIYKG V +VLP ++AAF+DIGL+K Sbjct: 9 ILISKTPYEKRIAIMEDGELAELVVEGVSSNRVLGNIYKGVVQKVLPALKAAFIDIGLEK 68 Query: 65 AAFLHASDIMPHTECV----AGEEQKQFTVRDIS--ELVRQGQDLMVQVVKDPLGTKGAR 118 A FLH D M E + ++ + ++IS E++++GQ++MVQVVK+P+ TKGAR Sbjct: 69 AGFLHQEDAMDRNELLRREYGDDDDEGDASKEISIDEILQEGQEIMVQVVKEPISTKGAR 128 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 LTT ++ R+LV MPGA+ VGVS+R +R KKVV G+I+RT Sbjct: 129 LTTHLSFAGRFLVCMPGANFVGVSKRERDPVKRREFKKVVRRLKGRDVGYIVRTNGLNES 188 Query: 179 EAELASDAAYLKRVW--TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSR 236 E E+ L+ W TK P+T +Y E ++ +R++ D + +D+R Sbjct: 189 EFEINKQMRELESKWEQTKYNFETMPPET--CIYEESDSIEQTVREYFGDNTDYVYIDNR 246 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 Y AL ++ P+ K++ ++ + +F+ F +EN+ R+L+R+V L GG L+I+Q Sbjct: 247 DEYFALRDYLKVLSPDKLDKVKLWSSSESLFEYFKIENDYARSLQRQVPLPRGGNLVIEQ 306 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+ ++D+NTG V ++ I TN++A IA+QLRLR++GG+IIIDFIDM ++ Sbjct: 307 TEALVSIDVNTGPKVHGKDQGKIILETNLDACHEIAKQLRLRDVGGLIIIDFIDMETDED 366 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESI--EHVLCNECPTCHGRGTV 414 R V +A+ +D+ S S GL+E+TRKR R ++ E C CP C+G G + Sbjct: 367 REAVYQEFRKAIRRDKAPISPAPISQFGLMEVTRKRVRVNLMTEKTEC--CPVCNGSGRI 424 Query: 415 KTVETVCYEIMREIVRVH 432 T+E+ I R + R H Sbjct: 425 ATLESTLGMIDRWLARAH 442 >UniRef50_A0LJB4 RNAse E n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJB4_SYNFM Length = 495 Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 174/477 (36%), Positives = 266/477 (55%), Gaps = 8/477 (1%) Query: 1 MTAELLVN-VTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ +++N + P E RVA ++G L+ IE R +VGNIYKG V+ V P +QAAFV+ Sbjct: 1 MSQTMIINAIHPEEFRVALMEGQTLEGFFIETATRGKVVGNIYKGIVTHVQPSLQAAFVN 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G+++ FL +I P EE VR I +++ GQ+++VQVVK+ LG+KGA L Sbjct: 61 YGMERNGFLPFPEIHPEYY----EEDSDERVR-IQDVIHSGQEVLVQVVKEELGSKGALL 115 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 TT I+L R +V MPG S GVS++IE +RERLK++ + E+ G I+RTAAEG Sbjct: 116 TTYISLAGRDVVLMPGQSQRGVSRKIEDGGQRERLKELAGDLKVPEEFGVILRTAAEGRT 175 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + E+ D +L ++W ++ + + +Y E LA RV+RD+ + + I VD R Sbjct: 176 KREVTKDFNHLMKIWEEIRKHVQETPAPALIYKEQDLAVRVIRDYFNPNIKTILVDDREV 235 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + + +F P + Y PI +++E +I + +KV LKSGG+L+ID TE Sbjct: 236 LKQVKDFIRIISPRHDRVVRFYKEDGPITGKYNLEEQIAQIFRKKVPLKSGGHLVIDPTE 295 Query: 299 AMTTVDINTG-AFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 A+ VD+N+G G L++ +F N+EA I RQLRLR+LGG+I+IDFIDM + H Sbjct: 296 ALVAVDVNSGRTNSGEGALEEMVFKVNMEAAAEIPRQLRLRDLGGLIVIDFIDMRDNRHT 355 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V L++ + KD+ K +V S GL+E++R+ +I ECP C G G V++ Sbjct: 356 REVERRLKEEIKKDKAKITVGRISRFGLLELSRQHLGLNIMRGSYKECPLCQGAGMVRSA 415 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ 474 ET +R+I +P VA L + L +E G ++++ Sbjct: 416 ETTALCYLRKIWLTLSQKKPASVRATFAPEVAHYLLNRKRQELTRLEERYGTNIQIE 472 >UniRef50_Q3A2X7 Ribonuclease E n=3 Tax=Bacteria RepID=Q3A2X7_PELCD Length = 926 Score = 291 bits (746), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 160/441 (36%), Positives = 264/441 (59%), Gaps = 19/441 (4%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT ++L+N T P E RVA ++ GIL E+ IE + GNIYK V+RV G+QAAFVD Sbjct: 1 MTKKMLINATHPEEHRVAIVEDGILSELDIEISGKEQTKGNIYKAVVARVETGLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMP------HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLG 113 G ++ FL +I P AG+ + I++++R+GQ+++VQ+VK+ G Sbjct: 61 YGSERLGFLQIGEIHPAFFKEAEGRVEAGKRPR------INDILRRGQEILVQIVKEERG 114 Query: 114 TKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRT 172 TKGA LTT ++LP RY+V MP + G+S++IE ES+R++L++++ E+ G+I+RT Sbjct: 115 TKGAALTTYLSLPGRYMVLMPDSDTKGISRKIEKESDRKKLRELMDSLEIPEEMGYIVRT 174 Query: 173 AAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIR 232 A +L D YL R++ K+ + +Y E L R +RD+ ++D + Sbjct: 175 AGSTQKRTDLKRDVDYLLRLFNKIQSLSDSTKAPSLIYKESNLVIRSIRDYFSDDMDEVL 234 Query: 233 VD-SRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGY 291 VD ++++ EA +F E +PE ++ + R+PIF + +E++I+ + KV L SGG Sbjct: 235 VDDAKVSTEAR-DFFQEVMPEYAELVKLHQERRPIFARYQIEDQIESIGKNKVMLPSGGS 293 Query: 292 LIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDM 351 ++ID TEA+ +D+N+G + ++ T + TN+EA ARQLRLR+LGG+++IDFIDM Sbjct: 294 IVIDSTEALVAIDVNSGKMASEQGVEATAYKTNLEAAVETARQLRLRDLGGLVVIDFIDM 353 Query: 352 NNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGR 411 + H R + +L++A+ D+ + ++ S GL+EM+R+R + ++ CP C+G Sbjct: 354 RDRKHIRDIEKTLKEAMKTDKARVTIGRISQFGLLEMSRQRIKSALAAASFEVCPHCNGS 413 Query: 412 GTVKTVETVCYEIMREIVRVH 432 G +KT+E +R R+H Sbjct: 414 GKIKTIEAQSLGFLR---RIH 431 >UniRef50_C4RPB5 Ribonuclease Rne/Rng n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RPB5_9ACTO Length = 1086 Score = 290 bits (743), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 157/408 (38%), Positives = 241/408 (59%), Gaps = 8/408 (1%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ G+L E ++ R + + GN+Y G+V VLP M+AAFVDIG + A L+A ++ Sbjct: 548 TQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 607 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 T + G R I + +R G ++VQV KDP+G KGARLT+ I L R+LV++ Sbjct: 608 NWDTTGLEGR------ARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYV 661 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 P + G+S+++ ++ER+RL+ V+ + + G I+RTAAEG E ELA D L+ W Sbjct: 662 PNGNASGISRKL-PDTERKRLRDVLKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQW 720 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 + + LY E L RV+RD + + + ++ +Y + + S P++ Sbjct: 721 EDIQAKVASGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGDESYGMVESYLSHVSPDL 780 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 ++ + G +F + ++ +I + L+RKV L SGG+L+ID+TEAMT VD+NTG + G Sbjct: 781 VDRVRRHVGTSDVFATYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGA 840 Query: 314 -RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 NL++T+ N+EA + I RQLRLR++GGI++IDFIDM E +R VL L + L +DR Sbjct: 841 GGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDR 900 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 K V ++LGLV+MTRKR + C C GRG V E V Sbjct: 901 TKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGVVIHTEPV 948 >UniRef50_D1SD19 Ribonuclease, Rne/Rng family n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SD19_9ACTO Length = 1092 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 157/408 (38%), Positives = 240/408 (58%), Gaps = 8/408 (1%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ G+L E ++ R + + GN+Y G+V VLP M+AAFVDIG + A L+A ++ Sbjct: 548 TQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 607 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G R I + +R G ++VQV KDP+G KGARLT+ I L R+LV++ Sbjct: 608 NWDATGLEGR------ARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYV 661 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 P + G+S+++ ++ER+RL+ V+ + + G I+RTAAEG E ELA D L+ W Sbjct: 662 PNGNASGISRKL-PDTERKRLRDVLKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQW 720 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 + + LY E L RV+RD + + + ++ Y+ + + S P++ Sbjct: 721 EDIQAKATEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDLVESYLSHVSPDL 780 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 ++L + G +F + ++ +I + L+RKV L SGG L+ID+TEAMT VD+NTG + G Sbjct: 781 VARLRRHAGVADVFAEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMTVVDVNTGKYTGS 840 Query: 314 -RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 NL++T+ N+EA + I RQLRLR+LGGI++IDFIDM E +R VL L + L +DR Sbjct: 841 GGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLTECLGRDR 900 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 K V ++LGLV+MTRKR + C C GRG + E V Sbjct: 901 TKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGVIIHTEPV 948 >UniRef50_D0L1K6 Ribonuclease, Rne/Rng family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K6_HALNC Length = 1016 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 160/426 (37%), Positives = 253/426 (59%), Gaps = 8/426 (1%) Query: 5 LLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T +E RVA +DG L +I IE N+YK ++R+ P ++A FV+ G D Sbjct: 4 MLINATQAEEIRVALVDGQTLYDIDIETPGHEQKKSNVYKALITRIEPSLEAVFVNYGAD 63 Query: 64 KAAFLHASDIM-PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + FL +I + + A +++ + ++ +++GQ+++VQV K+ G KGA LTT Sbjct: 64 RHGFLPFKEIARSYFDSEAVDDKGRPIIKS---ALKEGQEIIVQVEKEERGNKGAALTTF 120 Query: 123 ITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEA 180 ++L RYLV MP G VS+RIE + +R +K ++E +G G I+RTA G A Sbjct: 121 VSLAGRYLVLMPNNPRAGGVSRRIEGD-DRAEIKAALSELVVPEGMGLIVRTAGVGREPA 179 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 EL SD YL++VW ++++ + + + +Y E L R LRD+ ++ + +D ++ Sbjct: 180 ELQSDLDYLQQVWDAIVKKSEARKAPFLIYQESDLIIRALRDYMRNDIGEVLIDEPNMHQ 239 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 L+F + P+ K+ Y R P+F + +E++I+ A ER V L SGG L+ D EA+ Sbjct: 240 QALDFVNLVSPDSVDKIRLYQDRTPLFTRYQIESQIESAYERNVTLPSGGELVFDVAEAL 299 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T VDIN+G ++++DT FNTN+EA IARQLRLR+LGG+++IDFIDM H+R V Sbjct: 300 TAVDINSGRSTKGQDIEDTAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMGQPKHQREV 359 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 + L AL DR + + S GL+EM+R+R S+E + CP C G+G +++VE++ Sbjct: 360 ENRLRDALKMDRARVQLGRISRFGLLEMSRQRLSASLEESAQHVCPRCMGQGHIRSVESL 419 Query: 421 CYEIMR 426 IMR Sbjct: 420 ALSIMR 425 >UniRef50_Q1YTQ8 Ribonuclease E n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTQ8_9GAMM Length = 1008 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 170/463 (36%), Positives = 266/463 (57%), Gaps = 7/463 (1%) Query: 5 LLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N + +E RVA +DG L ++ IE R NIYKG+++RV P ++AAFVD G D Sbjct: 4 MLINASHTEEVRVAMVDGQKLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDYGAD 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I E G+ V +I + +R+GQ++ VQV K+ G+KGA LTT I Sbjct: 64 RHGFLPLKEI--SREYFKGKSSDGGRV-NIKDAIREGQEIFVQVEKEERGSKGAALTTFI 120 Query: 124 TLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAE 181 +L RYLV MP G +S+RIE E ER L++ + +G G I+RTA G E Sbjct: 121 SLAGRYLVLMPNNPRAGGISRRIEGE-ERADLREAMRGLDIPEGMGAIVRTAGIGRATEE 179 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D YL ++W + + + + L+ E + R +RD+ ++ + VDS+ Y Sbjct: 180 LQWDLDYLLQLWNTIEAEAEGAKAPHFLFQESNVIVRAIRDYLRQDVGEVIVDSQDAYNL 239 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 F +P+ T+K++ Y + P+F+ + +EN+I+ A R+V L SGG ++ID TEAM Sbjct: 240 AAAFIGTVMPDFTNKVKFYQEQIPLFNRYQIENQIETAFRREVSLPSGGSIVIDITEAMV 299 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 ++DIN+ ++++T FNTN EA + +ARQLRLR++GG+I+IDFIDM N H++ V Sbjct: 300 SIDINSARATKGGDIEETAFNTNKEAAEEVARQLRLRDVGGLIVIDFIDMLNTRHQKEVE 359 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 +++ +AL DR + V S GL+EM+R+R R S+E + CP C G+GT++ ++ Sbjct: 360 NTIREALKIDRARVQVGRISRFGLLEMSRQRLRPSLEETMSKICPRCKGQGTIRGTRSLA 419 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVE 464 I+R I S +VA L E+ +A++E Sbjct: 420 LSILRLIEEEAQKEFSKEIRAIVPVSVATFLLNEKRSEIADIE 462 >UniRef50_A8M0Z2 Ribonuclease, Rne/Rng family n=2 Tax=Salinispora RepID=A8M0Z2_SALAI Length = 1058 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 155/408 (37%), Positives = 241/408 (59%), Gaps = 8/408 (1%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ G+L E ++ R + + GN+Y G+V VLP M+AAFVDIG + A L+A ++ Sbjct: 521 TQIAVLEDGVLVEHYVTRNSSTTMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV 580 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G R I + ++ G ++VQV KDP+G KGARLT+ + L R+LV++ Sbjct: 581 NWDATGLEGR------ARSIEQALKSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYV 634 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG + G+S+++ ++ER RL+ + + E G I+RTAAEG E ELA D L+ W Sbjct: 635 PGGNTSGISRKL-PDNERRRLRDALKKLVPEGAGVIVRTAAEGASEDELARDVKRLQAQW 693 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 + + + LY E L RV+RD + + + ++ Y+ + + S P++ Sbjct: 694 EDIQAKAGKGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEGAYDMVESYLSHVSPDL 753 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG- 312 ++L + G +F + ++ +I + L+RKV L SGG+L+ID+TEAMT VD+NTG + G Sbjct: 754 VARLRRHVGTVDVFTEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGA 813 Query: 313 HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 NL++T+ N+EA + I RQLRLR++GGI++IDFIDM E +R VL L + L +DR Sbjct: 814 GGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDR 873 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 K V ++LGLV+MTRKR + C C GRG + E V Sbjct: 874 TKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGLIVHTEPV 921 >UniRef50_C8PW15 Ribonuclease E n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PW15_9GAMM Length = 1266 Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/427 (37%), Positives = 249/427 (58%), Gaps = 9/427 (2%) Query: 5 LLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T +E RVA +G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 4 ILINATHAEEIRVALCNGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYGSQ 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I P E +AG+ + + +I +L+++G +L+VQV K+ G KGA L+T I Sbjct: 64 RQGFLPIREIAP--EYLAGDPR---STTNIKQLIKEGDELIVQVEKEERGNKGAALSTLI 118 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAEL 182 +L RYLV MP + G R S R+ +K+ ++E +G IIRTA G EL Sbjct: 119 SLAGRYLVLMPNNARGGGISRQISGKLRDEMKQALSELRLPKGMSVIIRTAGIGKTTDEL 178 Query: 183 ASDAAYLKRVWTKVMERKKR-PQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 D +L +W + ++ ++ P R L+ E + R +RD+ ++ I VD+ Y Sbjct: 179 QQDLDHLLNIWKGIQQQSQKFPSPRL-LHQEAGVVTRAVRDYLRDDITEIWVDNEYAYNE 237 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 F +P+ +KL YT +P+F F +E +I+ A +R+V L SGG ++IDQTEA+ Sbjct: 238 AANFIEAVMPQQANKLRKYTDYEPMFARFGIEKQIETAYQREVRLPSGGSIVIDQTEALV 297 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 ++DIN+ ++ +T FNTN+EA IARQLRLR++GG+I+IDFIDM +DH+++V Sbjct: 298 SIDINSSKATKGADVSETAFNTNLEAADEIARQLRLRDMGGLIVIDFIDMATDDHQKQVE 357 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 + L++A DR + S GL+EM+R+R R S+E CP CHG G ++ + ++ Sbjct: 358 NRLKEATKNDRARIQFAEISRFGLLEMSRQRLRPSLEEATGYLCPRCHGTGMIRDLRSLA 417 Query: 422 YEIMREI 428 IMR+I Sbjct: 418 LSIMRQI 424 >UniRef50_B2HMG4 Ribonuclease E Rne n=28 Tax=Mycobacterium RepID=B2HMG4_MYCMM Length = 1017 Score = 288 bits (736), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 160/416 (38%), Positives = 248/416 (59%), Gaps = 27/416 (6%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ GI+ E + A +VGNIY G V VLP M+AAFVDIG + L+A ++ Sbjct: 362 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 421 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G ++K I + ++ G ++VQV KDP+G KGARLTT ++L RYLV++ Sbjct: 422 NWDAAGLGGADRK------IEQALKPGDYIVVQVSKDPVGHKGARLTTQVSLAGRYLVYV 475 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PGAS G+S+++ ++ER+RLK+++ E G IIRTA+EGV E ++ +D L+ W Sbjct: 476 PGASSTGISRKL-PDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVTRLQERW 534 Query: 194 TKVMER-----KKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 ++ + +K LY E + +V+RD + + + V ++ + E+ S Sbjct: 535 NQIEAKAVEIKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINEYVSS 594 Query: 249 YIPEMTSKLEHYTGRQP-----------IFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 P++ SKL Y +P +F + ++ ++ +A++RKV L SGG L+ID+T Sbjct: 595 VAPDLVSKLSKY---EPAVGSEGQVGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRT 651 Query: 298 EAMTTVDINTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 EAMT VD+NTG F G NL+ T+ N+EA + I RQLRLR++GGI++IDFIDM E + Sbjct: 652 EAMTVVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESN 711 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 R VL L +AL++DR + V+ ++LGLV++TRKR + CP C GRG Sbjct: 712 RDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPHCSGRG 767 >UniRef50_B8DVT8 Ribonuclease G n=7 Tax=Bifidobacterium RepID=B8DVT8_BIFA0 Length = 1028 Score = 287 bits (734), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 158/410 (38%), Positives = 250/410 (60%), Gaps = 21/410 (5%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+++ I+ +L E ++ VGNIY GRV VLP M+AAFVDIG + L+A ++ Sbjct: 489 TQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV 548 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G+ R I + G ++VQV KDP+G KGARLT+ +TL R+LV + Sbjct: 549 NWDATRLEGQ------PRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLV 602 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 P GVS+++ S+ ER RLK +V++ + G IIRTAAEG E +A D L W Sbjct: 603 PSGGMTGVSRKL-SDRERNRLKSIVSKIAPKDMGVIIRTAAEGASEEAIAKDLEGLTNQW 661 Query: 194 TKVMERK------KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTS 247 ++ ++ KRP+ L GE +A RV+RD + + +++ V+ Y + E+ Sbjct: 662 AEIQRKREEFLHGKRPKL---LQGEPDVAIRVVRDIFNDDFNKMIVEGDGVYHRIEEYLD 718 Query: 248 EYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 P++ +KLE + G + +FD + +++++++ +ER+V L SGG ++ID+TEAMTT+ Sbjct: 719 HMAPDLHNKLERWDPEEHGGKDVFDRWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTI 778 Query: 304 DINTGAFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 D+NTG F+G ++L++T+ N+EA++ IARQLRLR++GG+++ID++DM +R VL Sbjct: 779 DVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLR 838 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 L + L++DR K V ++LGLV+MTRKR + + ECP C GRG Sbjct: 839 RLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPECKGRG 888 >UniRef50_B5EL09 Ribonuclease, Rne/Rng family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EL09_ACIF5 Length = 782 Score = 287 bits (734), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 158/424 (37%), Positives = 245/424 (57%), Gaps = 7/424 (1%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T +E RVA +DG L ++ IER R NIYKGR++RV P ++AAFVD G + Sbjct: 4 MLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDYGAE 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I E +EQ + ++D LVR+GQ+++VQV K+ +KGA LTT + Sbjct: 64 RHGFLPLKEIA--REYFQQQEQGRKRIQD---LVREGQEIIVQVDKEERSSKGAALTTFV 118 Query: 124 TLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 +L RYLV MP G VS+RIE E + + + E G I RTA G L Sbjct: 119 SLAGRYLVLMPNNPRAGGVSRRIEGEDRTQIRQHLQLLDIPENMGVIARTAGIGQELEAL 178 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D YLK++W +++ + +Y E + R LRD ++ + +D Y A Sbjct: 179 QRDLEYLKQIWQAIVDTAAPRAAPFLIYQEGNVVVRALRDHFSEDIGEVLIDEEGAYNAA 238 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 ++F +P+M +L++Y P+F + +E +I+ A R+V L+SGG ++ID TEA+ Sbjct: 239 VQFMGSMMPKMVHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALVA 298 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 VD+N+G +++ +T F TN+EA + IARQ+RLR+LGG+I++DFIDM + H+R V + Sbjct: 299 VDVNSGRATKGQDIAETAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQREVEN 358 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L++AL DR + + S GL+EM+R+R S+E CP C+G G ++ E Sbjct: 359 KLKEALKLDRARVQLGRISRFGLMEMSRQRLGASLEEASSEPCPRCNGTGQIRGCEATSM 418 Query: 423 EIMR 426 ++R Sbjct: 419 HVLR 422 >UniRef50_A6WDN2 Ribonuclease, Rne/Rng family n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WDN2_KINRD Length = 1244 Score = 286 bits (733), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 157/394 (39%), Positives = 241/394 (61%), Gaps = 12/394 (3%) Query: 13 ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASD 72 +T++ ++ GIL E + + A+ +VGN+Y GRV VLP M+AAF+D+G + A L+A + Sbjct: 744 KTQIGVLEDGILVEHYGAKLAQTTMVGNVYLGRVQNVLPSMEAAFIDVGKGRNAVLYAGE 803 Query: 73 IMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVF 132 + + G+ ++ I ++ G ++VQV KDP+G KGARLT+ ++LP RYLV+ Sbjct: 804 VNWDAAGLEGQPRR------IEAALKSGDPVLVQVTKDPVGHKGARLTSQVSLPGRYLVY 857 Query: 133 MPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRV 192 +P S G+S+++ ++ER RLKKV+ + E G I+RTAAEGV E ELA+D L+ Sbjct: 858 VPRGSMTGISRKL-PDTERARLKKVLKQVVPEGAGVIVRTAAEGVAEEELAADVQRLQAT 916 Query: 193 WTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE 252 W + + L+GE L RV+RD + + ++ + +E + + + P+ Sbjct: 917 WEAIQAKASSKNAPVLLHGEPDLTVRVVRDVFNEDFTKLVISGDEAWETVRGYVDDVAPD 976 Query: 253 MTSKLEHY----TGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTG 308 + +LE + G + +F ++ ++Q+AL RKV L SGG L+ID TEAM VD+NTG Sbjct: 977 LAERLERWDGGAGGAEDVFAHHRIDEQLQKALGRKVWLPSGGSLVIDPTEAMHVVDVNTG 1036 Query: 309 AFVGHRN-LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQA 367 F G L++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R VL L + Sbjct: 1037 KFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVEC 1096 Query: 368 LSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 L +DR K V ++LGLV+MTRKRT + + VL Sbjct: 1097 LGRDRTKHQVAEVTSLGLVQMTRKRTGQGLAAVL 1130 >UniRef50_D0LAJ7 Ribonuclease, Rne/Rng family n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAJ7_GORB4 Length = 1123 Score = 286 bits (732), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 168/422 (39%), Positives = 251/422 (59%), Gaps = 24/422 (5%) Query: 8 NVTPSE--TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKA 65 + TP E T+VA ++ G+L E + +VGNIY GRV VLPGM+AAFVDIG + Sbjct: 504 HATPIEDYTQVAVLEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRN 563 Query: 66 AFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITL 125 L+A ++ + G +K I + ++ G +++VQV KDP+G KGARLTT I+L Sbjct: 564 GVLYAGEVNWDAAGLDGGSRK------IEQALKPGDNVLVQVSKDPVGHKGARLTTQISL 617 Query: 126 PSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASD 185 RYLV++PG S G+S+++ + ER+RLK+++A+ G IIRTA+EGV EL +D Sbjct: 618 AGRYLVYVPGGSSTGISRKL-PDVERKRLKQILAKLVPADAGVIIRTASEGVSAEELGAD 676 Query: 186 AAYLKRVWTKVMER----KKRPQT--RYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 A L+ W + E KK + LY E L RV+RD + + ++ V+ + Sbjct: 677 IARLEAKWRSIDESVTQAKKNSGSAGPKALYEEPDLLVRVVRDLFNEDFKKLVVEGAKAW 736 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFD------VENEIQRALERKVELKSGGYLI 293 + + P++ ++E + +P D D ++ ++ +AL+RKV L SGG LI Sbjct: 737 NLVEGYVGSVAPDLMDRVEKF--EKPHADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLI 794 Query: 294 IDQTEAMTTVDINTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMN 352 I+ TEAMT VD+NTG F G NL++T+ N+EA + I RQ+RLR++GG+II+DFIDM Sbjct: 795 IEHTEAMTVVDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMV 854 Query: 353 NEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 E +R VL L +AL++DR + V+ ++LGLV+MTRKR + C TC GRG Sbjct: 855 LESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTTCGGRG 914 Query: 413 TV 414 + Sbjct: 915 VI 916 >UniRef50_A0R152 Ribonuclease, Rne/Rng family protein n=9 Tax=Corynebacterineae RepID=A0R152_MYCS2 Length = 1037 Score = 286 bits (732), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 156/411 (37%), Positives = 246/411 (59%), Gaps = 17/411 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ G++ E + A +VGNIY G V VLP M+AAFVDIG + L+A ++ Sbjct: 402 TQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 461 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G+ +K I + ++ G ++VQV KDP+G KGARLTT ++L RYLV++ Sbjct: 462 NWEAAGLGGQNRK------IEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYV 515 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PGAS G+S+++ ++ER+RLK+++ E G IIRTA+EGV E ++ SD L++ W Sbjct: 516 PGASSTGISRKL-PDTERQRLKEILREVVPSDAGVIIRTASEGVKEEDIRSDVERLQKRW 574 Query: 194 TKVMER-----KKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 +++ + +K+ LY E + +V+RD + + + V + + + Sbjct: 575 SEIEAKAAEVTEKKAGAAVALYEEPDVLVKVIRDLFNEDFSSLIVSGDEAWNTINSYVEA 634 Query: 249 YIPEMTSKLEHYTGRQP----IFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 P++ +L Y P +F + ++ ++ +A++RKV L SGG L+ID+TEAMT VD Sbjct: 635 VAPDLMPRLTKYEPAGPDAPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVD 694 Query: 305 INTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG F G NL+ T+ N+EA + I RQLRLR++GGI++IDFIDM E +R VL Sbjct: 695 VNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRR 754 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L +AL++DR + V+ ++LGLV++TRKR + C C GRG V Sbjct: 755 LTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTACTHCGGRGIV 805 >UniRef50_D1BNE2 Ribonuclease, Rne/Rng family n=3 Tax=Veillonella RepID=D1BNE2_VEIPT Length = 475 Score = 286 bits (731), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 173/490 (35%), Positives = 272/490 (55%), Gaps = 27/490 (5%) Query: 4 ELLVNVTPSETRVAYIDG-GILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++LVNV E R+A ID G L + +ER + ++YKG V VL GMQAAFVDIG Sbjct: 3 KILVNVMREEIRMAVIDEEGQLVDFVLERTDDSHMANHMYKGTVKNVLNGMQAAFVDIGG 62 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + A+L+ G+EQK I + GQ ++VQVVK+ + KGAR+T D Sbjct: 63 SQNAYLNLQQ---------GKEQK------ILPRLSVGQQILVQVVKEEMLGKGARVTAD 107 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 ++L R++V +P + + +S++I E+ R +L+++ A Y E GFIIRTAA E+ Sbjct: 108 VSLAGRFMVLLPYSEGMHISKKITDEALRSKLQELAAPYVQEGCGFIIRTAAAKASADEI 167 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D YL R W V++R K ++ LY + R++RD+A ++ I VDS + L Sbjct: 168 GRDMEYLWRTWQHVLKRFKVAKSGTDLYSDADFWFRLVRDYAHRNVEEIIVDSDMGESRL 227 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 L+ K+ + PIF +E +++ + R + L SGG + ID TEA+T Sbjct: 228 LDLLGHGPTSQQIKVTRHRDSTPIFKANHIEPQLEDLISRDINLPSGGSIRIDHTEALTV 287 Query: 303 VDINTGAFVGHRN-LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 D+N+ + G N L+D F N EA + I RQLRLR++GGII++DFIDM +++H++ +L Sbjct: 288 FDVNSAHYTGKSNKLEDLAFTVNKEAAKEICRQLRLRDIGGIIVVDFIDMKDKEHQQELL 347 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 L D++KT V G S+LGLVEMTRKR R+ ++ ++ + CP C G G + + TV Sbjct: 348 KLLGVQAKLDKMKTVVCGISSLGLVEMTRKRARQGLQTLMFDTCPQCGGTGYMLSGRTVY 407 Query: 422 YEIMREIVRVHHAYDSDRFL----VYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 +I+R R+ + S R + P VA+ L L E +G+++ + + P Sbjct: 408 MQIVR---RIRELFKSGRIKTNLEIEVHPEVAQYLTKAVLEDLGES---IGRKISIVVNP 461 Query: 478 LYNQEQFDVV 487 ++E + ++ Sbjct: 462 QISREGYSLM 471 >UniRef50_C1DR24 Ribonuclease E n=27 Tax=Gammaproteobacteria RepID=C1DR24_AZOVD Length = 1139 Score = 285 bits (729), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 157/424 (37%), Positives = 244/424 (57%), Gaps = 7/424 (1%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T P E RVA +DG L ++ IE AR NIYKGR++RV P ++AAFVD G + Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGAE 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I E + + ++D+ + +GQ+++VQV K+ G KGA LTT I Sbjct: 64 RHGFLPLKEI--SREYFKKSPEGRINIKDV---LSEGQEVIVQVEKEERGNKGAALTTFI 118 Query: 124 TLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 +L RYLV MP G +S+RIE E E + + G I+RTA G EL Sbjct: 119 SLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLDVPADMGLIVRTAGLGRSSEEL 178 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D YL ++WT + E + +Y E + R +RD+ ++ + +DS E Sbjct: 179 QWDLDYLVQLWTAIKEASLDRSPPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEA 238 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 L F + +P+ SK++ Y P+F+ F +E++I+ A +R+V+L SGG ++ID TEA+ + Sbjct: 239 LSFIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVS 298 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +DIN+ ++++T TN+EA + IARQLRLR++GG+I+IDFIDM ++R V Sbjct: 299 IDINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVED 358 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 + +AL DR + + S GL+EM+R+R R S+ CP C G+G ++ VE++ Sbjct: 359 KMREALEADRARVQIGRISRFGLLEMSRQRLRPSLGETSGIVCPRCSGQGIIRDVESLSL 418 Query: 423 EIMR 426 I+R Sbjct: 419 AILR 422 >UniRef50_A3JIF1 Ribonucleases G and E n=2 Tax=Gammaproteobacteria RepID=A3JIF1_9ALTE Length = 1092 Score = 285 bits (729), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 171/492 (34%), Positives = 281/492 (57%), Gaps = 14/492 (2%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T P E RVA +DG L ++ IE +R NIYKG+++RV P ++AAFVD G D Sbjct: 4 MLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGKITRVEPSLEAAFVDFGAD 63 Query: 64 KAAFLHASDIMP-HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + FL +I + + G+ + + ++D+ + +GQ+++VQV K+ G KGA LTT Sbjct: 64 RHGFLPLKEISKEYFKKSPGQIEGKVNIKDV---IAEGQEVIVQVDKEERGNKGAALTTY 120 Query: 123 ITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAE-YCDEQGGFIIRTAAEGVGEA 180 I+L RYLV MP + G +S+RIE E ER +LK+ + + + G I+RTA G Sbjct: 121 ISLAGRYLVLMPNNARAGGISRRIEGE-ERAQLKEAMNQVQVPKSMGIIVRTAGIGRNSE 179 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 EL D YL + W + + + + ++ E + R +RD+ ++ + +D+ +E Sbjct: 180 ELQWDLDYLVQFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDAAAVHE 239 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +L F +P +K++ Y+ P+F + +E +I+ A +R+V+L SGG ++ID TEA+ Sbjct: 240 DVLNFVRAVMPTFENKIKLYSDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEAL 299 Query: 301 TTVDINTG-AFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 ++DIN+ A GH ++++T TN+EA + I RQLRLR++GG+I+IDFIDM ++R Sbjct: 300 VSIDINSSRATKGH-DIEETALQTNLEAAEEIGRQLRLRDMGGLIVIDFIDMTPARNQRE 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + +AL DR + V S GL+EM+R+R R S+ CP C G+GT++ +E+ Sbjct: 359 VENKMREALEIDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIES 418 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR I + +VA L E+ LA +E ++V + I P+ Sbjct: 419 LALSIMRLIYEESSKDKTGEVRAVVPVSVATFLLNEKRKQLATIE--ANQEVSIVIVPVP 476 Query: 480 NQE--QFDVVMM 489 E F+++ M Sbjct: 477 QMETPHFEIIRM 488 >UniRef50_Q2LU58 Ribonuclease E n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU58_SYNAS Length = 630 Score = 285 bits (728), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 156/426 (36%), Positives = 245/426 (57%), Gaps = 4/426 (0%) Query: 5 LLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N E R+A ++ G L E +I+ R I GNIYKG V +V G+QAAFV+ G+ Sbjct: 5 MLINAVHHEQKRMAIVEDGKLVEFNIQMSLREPITGNIYKGIVLKVERGLQAAFVNFGVG 64 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 K FL D+ P E ++ S ++ GQ+++VQV ++ G KGA LTT + Sbjct: 65 KDGFLPLRDVSPAYFTEKKEAGRESAHSRGS--LKIGQEVIVQVAREVSGRKGALLTTYL 122 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAEL 182 +LP RYLV +P G+S++IE+E +R LK +V + DE GFI+RTA + EL Sbjct: 123 SLPGRYLVLLPNKHSSGISRKIEAEEDRRLLKTLVEQIKIDEGMGFIVRTAGINRTKQEL 182 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + D +L R+W ++ +R + +Y E R LRD+ +E++ I VD TY + Sbjct: 183 SRDYQHLLRLWKEIQKRAETDPAPALIYQESDFGVRSLRDYFTSEIEEILVDDLETYRKM 242 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + P ++ Y R PIF +++E +I+ + +VELKSGG ++I TEAM T Sbjct: 243 RAYCKAVAPRNLRMIKQYKERLPIFSQYNLEEQIREIYQERVELKSGGSIVISPTEAMIT 302 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+G +N++DT F TN+EA + I RQLRLR+LGG+I+IDFIDM + H V Sbjct: 303 IDVNSGRASNKKNVEDTAFKTNLEAAEEIGRQLRLRDLGGLIVIDFIDMTDRKHEAEVEK 362 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 + ++AL+ DR + ++ S G++E++R++ +I+ + CP C G G ++E Sbjct: 363 TFKKALTLDRARIQMSRISKFGILELSRQKKHSTIQEISYTTCPFCSGSGIRPSLEYTAL 422 Query: 423 EIMREI 428 R+I Sbjct: 423 SAFRKI 428 >UniRef50_A4AGL0 Ribonuclease G n=3 Tax=Actinobacteria (class) RepID=A4AGL0_9ACTN Length = 944 Score = 284 bits (727), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 155/404 (38%), Positives = 240/404 (59%), Gaps = 9/404 (2%) Query: 15 RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI- 73 ++A ++ G+L E ++ + ++GN+Y GRV VLP M+AAFVDIG + A L++ ++ Sbjct: 299 QIAVLEDGVLVEHYVAKAQDASLIGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYSGEVD 358 Query: 74 --MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLV 131 G+ Q R I ++ G ++VQV KDP+G KGARLT+ ++LP RYLV Sbjct: 359 WDAAAENSADGKPQ----ARRIELALKPGDRVLVQVTKDPVGHKGARLTSQVSLPGRYLV 414 Query: 132 FMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKR 191 ++P S G+S+++ ++ER RLKK++ E G I+RTAAEG E +L D + L Sbjct: 415 YVPNGSMSGISRKL-PDTERSRLKKILKGVLPENVGVIVRTAAEGATEEQLTLDVSRLTN 473 Query: 192 VWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIP 251 W + + + Q L+ E L +++RD + + ++ ++ + + + P Sbjct: 474 QWADISAQVDKVQAPALLHSEPDLLIKIIRDVFNEDFHKLVIEGDDARKTIENYVRSVAP 533 Query: 252 EMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFV 311 ++ +L+ + F+ F V +I++AL+RKV L SGG L+ID+TEAMT VD+NTG FV Sbjct: 534 DLLDRLQPHESTVDSFEEFRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFV 593 Query: 312 GH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSK 370 G NL++T+ N+EA + I RQLRLR++GGII++DFIDM E +R VL L + LS+ Sbjct: 594 GSGGNLEETVTKNNVEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSR 653 Query: 371 DRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 DR K V ++LGLV+MTRK+ + C C GRG V Sbjct: 654 DRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSENCEVCAGRGVV 697 >UniRef50_C2KPN3 Ribonuclease G n=3 Tax=Actinomycetaceae RepID=C2KPN3_9ACTO Length = 817 Score = 284 bits (726), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 157/400 (39%), Positives = 240/400 (60%), Gaps = 9/400 (2%) Query: 15 RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIM 74 +VA ++ G+L E ++ R + +VGN+Y G+V VL M+AAFVDIG + A L+A ++ Sbjct: 243 QVALLEDGLLVEHYVSRHTQTTMVGNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVN 302 Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 AG K T R I E + G ++VQV KDP+G KGARLT+ ITL R+LV +P Sbjct: 303 WD---AAGLNSK--TGR-IEEALSPGDMVLVQVTKDPIGHKGARLTSQITLAGRHLVLVP 356 Query: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194 + G+S+++ E ER+RLK V+ G I+RTAAEG E +L D L ++W Sbjct: 357 SGAMTGISRKL-PEEERKRLKTVLKTMIPAGFGVIVRTAAEGATEEQLRVDVERLVKIWE 415 Query: 195 KVMERKKRPQTRYQL-YGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 + +++ RP+ QL + E LA RV+RD + ++ + + + + ++ E PE+ Sbjct: 416 DIEKKRARPRNSPQLLHAEPELAVRVVRDIFNEDISSLTIQGEEAWHTISKYVKELSPEL 475 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 +L + +F ++ ++ + ERKV L SGGYLIID+TEAMT +D+NTG ++G Sbjct: 476 GERLHFWEDDSDVFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTEAMTVIDVNTGRYIGA 535 Query: 314 RN-LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 L++T+ N+EA + I RQLRLR++GGI++IDF+DM E +R VL L + L +DR Sbjct: 536 GGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNRDLVLRRLVECLGRDR 595 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 + V ++LGLV+MTRKR + + +C C GRG Sbjct: 596 TRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTQCECCDGRG 635 >UniRef50_Q1K0W4 Ribonuclease, Rne/Rng family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0W4_DESAC Length = 952 Score = 283 bits (725), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 153/431 (35%), Positives = 251/431 (58%), Gaps = 3/431 (0%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L+N T P E RVA ++ GIL E+ IE + GNIYKG V RV G+QAAF+D Sbjct: 18 MSKKMLINATLPEEDRVAIVEDGILTELDIESAGHQQTKGNIYKGEVIRVEQGLQAAFID 77 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G + FL +I P +E + I+E++++GQ ++VQVVK+ GTKGA L Sbjct: 78 YGAQRPGFLQIGEIHPSLYPKRDDEGQSNRRPPITEILKRGQQILVQVVKEERGTKGAAL 137 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 TT+++LP RY+V +P +S G+S++I+++ R+ +K ++ + G+IIRTAA Sbjct: 138 TTEVSLPGRYMVLIPQSSSRGISRKIDNDHVRKEIKNTLSSLELPDNMGYIIRTAAIDQP 197 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 EL D YL + ++ ++ + +Y E L R +RD+ E+D + +D R Sbjct: 198 PEELKRDFDYLLNTYNSIVSHSEKAKAPALIYQESNLVLRSIRDYFSPEIDEVLIDDREV 257 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 ++ +F +PE ++ + R+PIF + +E +I V L SGG +++DQTE Sbjct: 258 FQEARDFFKAVMPEYMPLVKLHQERRPIFARYQIEEQISHLSSNTVNLPSGGSIVLDQTE 317 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ +D+N+G G ++++ T N+EA +ARQLRLR++GG+I+IDFIDM + R Sbjct: 318 ALVAIDVNSGKMGGEQDVEATAHRVNLEAAIEVARQLRLRDMGGLIVIDFIDMRQRRNAR 377 Query: 359 RVLHSLEQALSKDRVKTSVNGFS-ALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 V +L+ AL D+ + +V S GL+EM+R+R + ++ N CP C G G +++ Sbjct: 378 EVEKALKNALKIDKARVTVGRISHQFGLLEMSRQRIKANLGEGSYNMCPHCQGSGRIRSD 437 Query: 418 ETVCYEIMREI 428 E+ ++R I Sbjct: 438 ESRSIALLRRI 448 >UniRef50_Q2S597 Ribonuclease, Rne/Rng family subfamily n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S597_SALRD Length = 596 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 152/427 (35%), Positives = 250/427 (58%), Gaps = 17/427 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ E++ NV +TR+A ++ G L E++IE + +GN+Y G++ +V+P +QAAFVDI Sbjct: 1 MSKEIVFNVGNEQTRIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAAFVDI 60 Query: 61 GLDKAAFLHASDI--------------MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQ 106 G ++ AFLH SD+ P E + + K+ + S+L+ +GQ ++VQ Sbjct: 61 GQEQDAFLHFSDLSDNLPYLLDFLGLEAPTVEAIDVPKGKKDWDKRPSDLLNRGQTILVQ 120 Query: 107 VVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG 166 V K+P+ KG+R++TDI+L R+LV +P ++V VS++I + ER RL+ + + + Sbjct: 121 VTKEPISNKGSRISTDISLAGRFLVLVPLQNYVAVSRKITDDEERRRLESLASSLVPDGV 180 Query: 167 GFIIRTAAEGVGEAELASDAAYLKRVWTKVMER-KKRPQTRYQLYGELALAQRVLRDFAD 225 G I+RT A+ L D L W +V +R K +P ++ ++ +A ++RD Sbjct: 181 GVIVRTVAQDRDAKSLDKDMKLLMERWRRVEKRLKDKPSPPELVHEDVDMASSIVRDEFS 240 Query: 226 AELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVE 285 E DRI VD Y ++ + P++ ++E + G QP+F+ +++ RA + +VE Sbjct: 241 EEYDRILVDHEGLYSSIQSYVRAVGPQLVDRVELHEGDQPVFESVGIQHGADRAFKDRVE 300 Query: 286 LKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIII 345 L SGGYL I++TEAM VD+N+G ++ + N N+EA + IARQ+RLR+LGGII+ Sbjct: 301 LPSGGYLFIEKTEAMHVVDVNSGRSGKGKSQAENSLNVNLEAARVIARQIRLRDLGGIIV 360 Query: 346 IDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL--CN 403 +DFID+ +ED +++V +++ +DR T V S GLVE+TR+R R SI N Sbjct: 361 VDFIDLRDEDDKKKVYDEVKKGFEEDRAVTKVLPMSDFGLVEITRQRLRPSITTTFSSAN 420 Query: 404 ECPTCHG 410 P+ G Sbjct: 421 GTPSDDG 427 >UniRef50_C3PI06 Ribonuclease E n=3 Tax=Corynebacterium RepID=C3PI06_CORA7 Length = 1062 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 156/411 (37%), Positives = 239/411 (58%), Gaps = 17/411 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+V ++ +L E + E +GNIY GRV VLP M+AAFVDIG + L+A DI Sbjct: 368 TQVGVLEDDLLVEHFVTTETHPSQIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGDI 427 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G +K + ++ G ++VQV KDP+G KGARLTT I+L R+LV++ Sbjct: 428 DWRALGIGGRSRK------VENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRFLVYV 481 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG G+S+++ + ER+RLK ++ GG IIRTAAE V E ++ASD L +W Sbjct: 482 PGGRSAGISRKLPA-PERKRLKGILERVIPGDGGAIIRTAAENVSEEDIASDVNRLHSLW 540 Query: 194 TKVM-----ERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 + E+ + LY E L +V+RD + + + VD + +Y + + Sbjct: 541 EDISARAAHEKATKGAKPVTLYEEPDLLIKVVRDLFNEDFSTLVVDGKRSYNTVSAYVDS 600 Query: 249 YIPEMTSKLEHYTGRQ----PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 ++ ++ Y R+ F + ++ ++Q+AL RKV L SGG L+ID+TEAMT +D Sbjct: 601 MAHDLADRVVRYDAREHDGEDAFSAYRIDEQLQKALGRKVWLPSGGTLVIDRTEAMTVID 660 Query: 305 INTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG F G NL++T+ N+EA + I RQ+RLR++GG+I++DFIDM +++ VL Sbjct: 661 VNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLPENQDLVLRR 720 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L++AL +DR + V+ ++LGLV+MTRKR + EC CHGRG + Sbjct: 721 LKEALGRDRTRHQVSEVTSLGLVQMTRKRVGTGLIETFSTECEACHGRGII 771 >UniRef50_C5CAZ2 Ribonuclease, Rne/Rng family n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CAZ2_MICLC Length = 1091 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 156/405 (38%), Positives = 239/405 (59%), Gaps = 14/405 (3%) Query: 15 RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIM 74 ++A ++ G+L E + + ++GN+Y G+V VLP M+AAFVDIG + A L+A ++ Sbjct: 240 QIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVN 299 Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 + G+ +K I ++ G ++VQV KD +G KGARLT+ ++LP RYLV++P Sbjct: 300 WDAAQLDGKPRK------IENALKSGDTVLVQVTKDSVGHKGARLTSQVSLPGRYLVYVP 353 Query: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194 G S G+S+++ + ER RLKK++ ++ + G I+RTAAEG E EL +D L+ W Sbjct: 354 GGSMTGISRKL-PDVERSRLKKILKDHLPQDAGVIVRTAAEGTSEQELQNDINRLRAQWE 412 Query: 195 KVMERKKRPQTRYQ--LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE 252 + E+ + LY E L + +RD + + + V T++ + + + P Sbjct: 413 GIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEATWDNIEAYVTYVAPH 472 Query: 253 MTSKLEHYTGR----QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTG 308 + +L H+ + ++ V+ ++ +ALERKV L SGG L+ID+TEAMT VD+NTG Sbjct: 473 LLGRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVIDRTEAMTVVDVNTG 532 Query: 309 AFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQA 367 F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R VL L + Sbjct: 533 KFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANRDLVLRRLVEC 592 Query: 368 LSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 L +DR K V ++LGLV+MTRKR + V C C GRG Sbjct: 593 LGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRG 637 >UniRef50_A8FWL8 Ribonuclease, Rne/Rng family n=38 Tax=Gammaproteobacteria RepID=A8FWL8_SHESH Length = 1201 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 158/429 (36%), Positives = 245/429 (57%), Gaps = 15/429 (3%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T SE RVA +DG L ++ IE NIYKG+++RV P ++AAFVD G D Sbjct: 4 MLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAD 63 Query: 64 KAAFLHASDI----MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 + FL +I P G +I E+V++GQ+++VQ+ K+ G KGA L Sbjct: 64 RHGFLPLKEIAREYFPKGYSFQGRP-------NIKEVVKEGQEVIVQIDKEERGNKGAAL 116 Query: 120 TTDITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGV 177 TT I+L YLV MP G +S+RIE + ER LK ++E QG G I+RTA G Sbjct: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKAAMSELEVPQGMGLIVRTAGVGK 175 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 AEL D L+ WT + E + + ++ E + R +RD+ ++ + +D Sbjct: 176 DSAELKWDLKVLEHHWTAIKEASEGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPR 235 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 +E + + P+ +++ Y P+F F +E +I+ A +R+V L SGG ++ID T Sbjct: 236 IFEDAKQHVALVRPDFVDRIKQYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPT 295 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+T++DIN+ ++++T NTN+EA +ARQLRLR+LGG+++IDFIDM H+ Sbjct: 296 EALTSIDINSARATKGGDIEETALNTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQ 355 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V + + A+ DR + + S GL+EM+R+R R S+E + CP CHG+GT++ Sbjct: 356 REVENRMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGT 415 Query: 418 ETVCYEIMR 426 E++ I+R Sbjct: 416 ESLALSILR 424 >UniRef50_B4RR31 Rne n=31 Tax=Neisseriaceae RepID=B4RR31_NEIG2 Length = 919 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 161/425 (37%), Positives = 246/425 (57%), Gaps = 9/425 (2%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L N T +E RVA +DG L ++ IE + GNIYKG ++R+ P ++A FVD G D Sbjct: 4 MLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYGTD 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL ++ G E + ++D+ +++G +++VQV KD G KGA LTT I Sbjct: 64 RHGFLPFKEV--SRSYFLGYEGGRARIQDV---LKEGMEVIVQVEKDERGNKGAALTTFI 118 Query: 124 TLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQGGFII-RTAAEGVGEAE 181 +L RYLV MP G VS+RIE E ER+ LK +A+ G II RTA G E Sbjct: 119 SLAGRYLVLMPNNPRGGGVSRRIEGE-ERQELKAAMAQLDIPNGMSIIARTAGIGRSAEE 177 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D YLK++W + E K Y L+ E +L R +RD+ ++ I VD++ Y+ Sbjct: 178 LEWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQ 237 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + EF S +P +L+ Y P+F F +E++I+ A R V L SGG ++ID TEA+ Sbjct: 238 VAEFMSYVMPGNAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALV 297 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 ++D+N+ +++DT F TN+EA + +ARQ+RLR+LGG+++IDFIDM N H+R V Sbjct: 298 SIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVE 357 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 + L AL KDR + + S GL+E++R+R + ++ CP C G G ++ +E+ Sbjct: 358 NVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTA 417 Query: 422 YEIMR 426 ++R Sbjct: 418 LHVLR 422 >UniRef50_D1Y9V9 S1 RNA binding domain protein n=3 Tax=Propionibacterium acnes RepID=D1Y9V9_PROAC Length = 874 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 159/417 (38%), Positives = 249/417 (59%), Gaps = 17/417 (4%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +++V + +++A ++ G+L E +++R + +GNIY G+V VLP M+AAF+DIG Sbjct: 430 KMIVRQSDDYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIGRG 489 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + A L+A ++ GE+++ I +++ G ++VQV KDP+G KGARLT+ I Sbjct: 490 RNAVLYAGEVDWAKYGKEGEDKR------IEHVLKSGDQVLVQVTKDPVGAKGARLTSHI 543 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELA 183 ++P R++V+ PG G+S+++ ++SER+RLKK+V I+RTAAEG E +L Sbjct: 544 SVPGRFVVYSPGGHLSGISRKL-ADSERKRLKKIVENNIPSDASVIVRTAAEGATEEDLV 602 Query: 184 SDAAYLKRVWTKVMERK-KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL----T 238 D LK W +V+ERK + LY E L R++RD A+ + + Sbjct: 603 RDINRLKVQW-EVIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDA 661 Query: 239 YEALLEFTSEYIPEMTSKLEHY--TGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 Y+ + + PEM S+L H+ T + P F + ++ ++ +ALERKV L SGG L+ID+ Sbjct: 662 YDTIKAYVDHVAPEMASRLIHWEHTDKDP-FAEYRIDEQVAKALERKVYLPSGGSLVIDR 720 Query: 297 TEAMTTVDINTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 TEAMT +D+NTG F G NL+ T+ N+EA + I RQLRLR++GGII+IDFIDM Sbjct: 721 TEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPT 780 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 +R ++ L + L +DR + V ++LGLV+MTRK+ + +C C GRG Sbjct: 781 NRELLVRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRG 837 >UniRef50_UPI0001BC2E10 putative ribonuclease n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2E10 Length = 1076 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 156/415 (37%), Positives = 248/415 (59%), Gaps = 17/415 (4%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHI-EREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +LV + +T++ ++ GI E ++ E + ++GN+Y G+V VLP M+AAF+DIG Sbjct: 438 MLVRESGEQTQLVVVEDGITVEHYLKENRQQSSLIGNVYLGKVQNVLPSMEAAFIDIGKG 497 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + A L+A ++ + G+ R I + G ++VQV KDP+G KGARLT+ I Sbjct: 498 RNAVLYAGEVNWDALGMDGK------ARRIEVALSPGDAVLVQVTKDPIGHKGARLTSQI 551 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELA 183 +LP R+LV++PG S G+S+++ + ER RLKK++ E + G I+RTAAEG + EL+ Sbjct: 552 SLPGRFLVYVPGNSMTGISRKL-PDVERNRLKKLLKELVGDSNGVIVRTAAEGASDKELS 610 Query: 184 SDAAYLKRVWTKVMERKKR-----PQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 +D L + W + ++ K PQ LY E + R++RD + + + +D Sbjct: 611 TDVERLAKRWETIEKKSKSTKVLAPQL---LYSEPDMIVRIIRDVFNEDFSSLVIDGDGA 667 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + + E+ P++ ++ Y+ + IFD + VE ++Q+AL+R V L SGG L+ID+TE Sbjct: 668 WNTIHEYVEAVAPDLLDRVHRYSEDEDIFDHYRVEEQVQKALQRTVNLPSGGSLVIDRTE 727 Query: 299 AMTTVDINTGAFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 AMT +D+NTG F G NL++T+ N+EA + + RQ+RLR++GGII++DFIDM E +R Sbjct: 728 AMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEVIRQVRLRDIGGIIVVDFIDMVLESNR 787 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 V+ L + L +DR K V ++LGLV+MTRKR + L + GRG Sbjct: 788 DLVVRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRIGTGLAESLVSAGADLSGRG 842 >UniRef50_Q0A8Q8 Ribonuclease E n=8 Tax=Gammaproteobacteria RepID=Q0A8Q8_ALHEH Length = 1073 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 163/427 (38%), Positives = 255/427 (59%), Gaps = 10/427 (2%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T P E RVA +DG L ++ IE AR NIYKG ++RV P ++AAFV G + Sbjct: 4 MLINATQPEELRVALVDGQQLYDLDIETPAREQKKANIYKGTITRVEPSLEAAFVQYGAE 63 Query: 64 KAAFLHASDIMP--HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I P + E + + + ++RD VR+GQ+++VQV K+ GTKGA LTT Sbjct: 64 RHGFLPFKEIAPSYYREGLKADGGRP-SIRDA---VREGQEVVVQVDKEERGTKGAALTT 119 Query: 122 DITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGE 179 I+L RYLV MP G VS+RIE S+R +++ + + +G G I+RTA G Sbjct: 120 YISLAGRYLVLMPNNPRAGGVSRRIEG-SDRAEIREALRQLDVPEGMGLIVRTAGVGRTV 178 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++W+ + + + + +Y E + R LRD+ +++ I +D + Sbjct: 179 EELQWDLDYLLKLWSAIQKAAEARSAPFLIYQESDVIIRALRDYLRSDIGEILIDDPQVF 238 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E +EF + +P KL++Y R P+F + +E++I+ A +R V L SGG ++ID TEA Sbjct: 239 EKAVEFVEQVMPYNRQKLKYYDDRVPLFTRYQIESQIESAFQRDVRLPSGGAIVIDHTEA 298 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T +TN+EA IARQLRLR+LGG+I+IDFIDM ++R Sbjct: 299 LISIDINSARATKGSDIEETALHTNLEAADEIARQLRLRDLGGLIVIDFIDMGPNRNQRE 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L +A+ DR + + S GL+EM+R+R R S+ C C G+GTV++VE+ Sbjct: 359 VENRLREAVKADRARVQIGRISRFGLLEMSRQRLRSSLGESHQEVCARCGGQGTVRSVES 418 Query: 420 VCYEIMR 426 + I+R Sbjct: 419 LALSILR 425 >UniRef50_C2BMV7 Ribonuclease E n=3 Tax=Corynebacterium RepID=C2BMV7_9CORY Length = 1294 Score = 280 bits (716), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 153/411 (37%), Positives = 242/411 (58%), Gaps = 17/411 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+V ++ +L E + E++ ++GNIY GRV VLP M+AAFVDIG + L+A +I Sbjct: 422 TQVGVLEDDLLVEHFVTTESQASLIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGEI 481 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G R + ++ G ++VQV KDP+G KGARLTT I+L RYLV++ Sbjct: 482 DWRKTKLHGR------ARKVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRYLVYV 535 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG G+S+++ + ER+RLK ++ GG IIRTAAE V E +A+D L W Sbjct: 536 PGGRSAGISRKLPA-PERKRLKDILGRVVPGDGGAIIRTAAENVPEEAIATDVNRLHSRW 594 Query: 194 TKVMERKKRPQTRY-----QLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 ++ K+ ++ +Y E + +V+RD + + + VD + ++ + + Sbjct: 595 EDIVAHAKKEKSSKGAKPVTMYEEPNMLIKVVRDLFNEDFTELIVDGKRSFNTVRAYVDS 654 Query: 249 YIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 P++ ++ Y G Q F+ + ++ ++ +AL RKV L SGG L+ID+TEAMT +D Sbjct: 655 MAPDLADRVVRYRAKDHGGQDAFEAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVID 714 Query: 305 INTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG F G NL++T+ N+EA + I RQ+RLR+LGG+I++DFIDM +++ VL Sbjct: 715 VNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRR 774 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L++AL +DR + V+ ++LGLV+MTRKR + EC C+GRG + Sbjct: 775 LKEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTECECCNGRGII 825 >UniRef50_B6BTS7 Ribonuclease E n=2 Tax=Betaproteobacteria RepID=B6BTS7_9PROT Length = 738 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 156/463 (33%), Positives = 268/463 (57%), Gaps = 8/463 (1%) Query: 5 LLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L N T SE RVA I+ ++++ ER +R NIYKG ++RV P ++AAFV+ G+D Sbjct: 4 MLFNATQSEEIRVAIINDSTIEDLDYERSSREQRKSNIYKGTITRVEPSLEAAFVNYGVD 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I E + + +K+ I++++ +GQ+++VQV K+ G KGA LTT + Sbjct: 64 RHGFLPFKEI--SKEFYSKKSRKKNL--SIADVINEGQEVIVQVSKEERGNKGAALTTFL 119 Query: 124 TLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQGGFII-RTAAEGVGEAE 181 +L RY+V MP +S G +S+RIE + ER K+V+++ ++G +I RTA G E Sbjct: 120 SLAGRYIVLMPNSSESGGISRRIEGD-ERSNFKEVLSQLKVKKGMSVIGRTAGIGASVEE 178 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 + D YL ++ + + + + +Y E L R +RD+ + +++ I +D++ Y+ Sbjct: 179 IQWDLDYLTQLSEAIQGASGQQEAPFLIYQESNLVIRAIRDYFNTDIEEILIDNQDIYDQ 238 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 +F + +P+ +++ Y +F F++EN+I+ A R+V+L SGG ++ID TEA+ Sbjct: 239 ASQFMNHVMPDYADRIQLYEESTALFSKFNIENQIESAFLREVQLPSGGVIVIDHTEALV 298 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 ++D+N+ R++++T FNTN+EA + +A+QLRLR++GG+I++DFIDM N H+R V Sbjct: 299 SIDVNSSRSTKGRDIENTAFNTNLEAAREVAKQLRLRDIGGLIVVDFIDMENPKHQREVE 358 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 L AL D+ + S GL+E++R+R R SI ECP C+G G ++ ++ Sbjct: 359 ECLRDALKHDKARIQTGRISRFGLMELSRQRLRPSIGETSNGECPKCNGTGRIRDFQSSA 418 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVE 464 I+R I + + V VA L E+ + + E Sbjct: 419 LHIIRMIQEQSNKKQGQKISVQVPVDVATFLLNEKREIIIQTE 461 >UniRef50_C5VAX0 Ribonuclease E n=5 Tax=Corynebacterium RepID=C5VAX0_9CORY Length = 929 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 152/411 (36%), Positives = 240/411 (58%), Gaps = 17/411 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+V ++ +L E + + + + GNIY GRV VLP M+AAF+DIG + L+A ++ Sbjct: 306 TQVGVLEDDMLVEHFVTSDTQSSLAGNIYLGRVQNVLPAMEAAFIDIGKGRNGVLYAGEV 365 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G +K I + ++ G ++VQV KDP+G KG RLTT I+L RYLV++ Sbjct: 366 DWRAANLGGRHRK------IEQALKSGDQVLVQVAKDPIGQKGPRLTTQISLAGRYLVYV 419 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG G+S+++ + ER+RLK ++ G IIRTAAEGV E +A+D L +W Sbjct: 420 PGGKSAGISRKLPA-PERKRLKAILKNVVPADGSVIIRTAAEGVPEDAIAADVNRLHSLW 478 Query: 194 TKVMER----KKRPQTR-YQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 ++ ER K+ T+ +Y E + +V+RD + + + VD + + + Sbjct: 479 EQIQERTLKEKESKGTKPVTMYEEPNMLVKVVRDLFNEDFTSLVVDGNRAWNTVHAYIQS 538 Query: 249 YIPEMTSKLEHYTGR----QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 P++ +LE + Q F+ V+ ++++AL RKV L SGG L+ID+TEAMT +D Sbjct: 539 VAPDLLDRLEKFDREAHDGQDAFEALRVDEQLKKALSRKVWLPSGGTLVIDRTEAMTVID 598 Query: 305 INTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG F G NL++T+ N+EA + I RQ+RLR+LGG+I++DFIDM +++ VL Sbjct: 599 VNTGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRR 658 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L +AL +DR + ++ ++LGLV++TRKR + EC C GRG + Sbjct: 659 LTEALGRDRTRHQISEVTSLGLVQITRKRLGTGLLETFATECEECSGRGVL 709 >UniRef50_D2RC82 S1 RNA binding domain protein n=8 Tax=Bifidobacteriaceae RepID=D2RC82_GARVA Length = 1093 Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 152/410 (37%), Positives = 251/410 (61%), Gaps = 21/410 (5%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+++ I+ IL E ++ VGNIY GR+ VLP M+AAFVDIG + L+A ++ Sbjct: 531 TQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVLYAGEV 590 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G+ ++ I + G ++VQV KDP+G KGARLT+ +TL R+LV + Sbjct: 591 NWDMARLEGQPRR------IELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLV 644 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 P GVS+++ S+ ER RL+ +V++ + G IIRTAA+G E + D L + W Sbjct: 645 PSGGMTGVSRKL-SDRERSRLRAIVSKIAPKDMGVIIRTAADGASEESIEKDLDSLVKQW 703 Query: 194 TKVMERK------KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTS 247 ++ ++ KRP+ L GE +A RV+RD + + ++ V+ + + E+ Sbjct: 704 ERIEAKREEYLHGKRPKL---LQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRIDEYLE 760 Query: 248 EYIPEMTSKLEHYTGRQ----PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 P++ SK+E++ + +FD + +++++++ +ER+V L +GG ++ID+TEAMTT+ Sbjct: 761 MMAPDLRSKVEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTI 820 Query: 304 DINTGAFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 D+NTG F+G ++L++T+ N+EA++ IARQLRLR++GG+++ID++DM +R VL Sbjct: 821 DVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLR 880 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 L + L++DR K V ++LGLV+MTRKR + + ECPTC GRG Sbjct: 881 RLLECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 930 >UniRef50_A6VXP7 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteobacteria RepID=A6VXP7_MARMS Length = 1071 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 148/425 (34%), Positives = 246/425 (57%), Gaps = 7/425 (1%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE +R NIYKGR++R+ P ++AAFVD G D Sbjct: 4 MLINATQQEELRVALVDGQRLYDLDIESGSREQKKSNIYKGRITRIEPSLEAAFVDFGAD 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I + + ++D+ + +GQ+++VQV K+ G KGA LTT + Sbjct: 64 RHGFLPLKEISKTYFSKKSNHEGRINIKDV---LSEGQEVIVQVDKEERGNKGAALTTFV 120 Query: 124 TLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAE 181 +L RYLV MP G +S+RI+ + +R LK+ ++ E GG I+RTA G E Sbjct: 121 SLAGRYLVLMPNNPRAGGISRRIDGD-DRSHLKEAMSGLNTPENGGLIVRTAGVGRSTEE 179 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D YL +W+ + + + +Y E + R +RD+ ++ + +D + Y+ Sbjct: 180 LQWDLDYLDTLWSSITKAASEKPAPFLIYQESNIVIRAIRDYLREDIGEVLIDEKSAYQD 239 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + F + +P S+++ YT P+F+ F +E +I+ A +R+V L SGG ++ID TEA+ Sbjct: 240 AINFVMQVMPHFKSRIKMYTDSTPLFNRFQIETQIETAFQREVRLPSGGSIVIDPTEALV 299 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 ++DIN+ ++++T TN+EA IARQLRLR++GG+++IDFIDM +++ V Sbjct: 300 SIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPVRNQKEVE 359 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 ++ AL DR + + S GL+EM+R+R R S+ CP C+G+G ++ VE++ Sbjct: 360 TRMKNALEADRARVQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGFIRDVESLA 419 Query: 422 YEIMR 426 ++R Sbjct: 420 LSVLR 424 >UniRef50_B5JUW5 Ribonuclease E n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUW5_9GAMM Length = 914 Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 166/467 (35%), Positives = 267/467 (57%), Gaps = 13/467 (2%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T P E RVA +DG L + IE +R NIYKG ++RV P ++AAFVD G + Sbjct: 4 MLINATQPEELRVAIVDGQKLINLDIEVPSREQKKANIYKGVITRVEPSLEAAFVDFGAE 63 Query: 64 KAAFLHASDI----MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 + FL +I +P + + + + V+D +++GQ+L++QV K+ G KGA + Sbjct: 64 RHGFLPFKEINRRYLP--DDIETNDNGRPNVKD---GIKEGQELIIQVEKEERGNKGAAI 118 Query: 120 TTDITLPSRYLVFMPGASHV-GVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGV 177 TT+I+L RYLV MP + GVS+RIE E ER ++++ + + G G I+RTA G Sbjct: 119 TTNISLAGRYLVAMPHSPRSGGVSRRIEGE-ERAQVREAMQDMTIPDGTGVIVRTAGVGR 177 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 EL D YL ++W + + + Q + +Y E + R LRD ++ I +D Sbjct: 178 TSEELQWDFDYLAQIWEAIEKAAESRQGPFLIYQESNVIIRALRDHYRDDIGEILIDEAG 237 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 ++ +F S + KL+ Y P+F+ + +E++I+ A +R+V L SGG +++D T Sbjct: 238 IHKQANDFMSLAMQNDLRKLKFYEDSVPLFNRYQIESQIESAFQREVRLPSGGSIVVDPT 297 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+T++DIN+ N+D+T NTN+EA IARQLRLR+LGG+++IDFIDM + H+ Sbjct: 298 EALTSIDINSARATKGSNIDETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMGSNKHQ 357 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V + L A+ DR + N S GL+EM+R+R R S+ CP C G GT++++ Sbjct: 358 REVENRLRDAVRIDRARVQTNRISKFGLLEMSRQRLRPSLGESSKEVCPRCEGHGTIRSI 417 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVE 464 E++ ++R + ++ R + VA + E+ +AE+E Sbjct: 418 ESLALAVLRIMEEEALKENTGRVIAQLPVDVATFMLNEKRQQVAELE 464 >UniRef50_A8F3K6 Ribonuclease, Rne/Rng family n=1 Tax=Thermotoga lettingae TMO RepID=A8F3K6_THELT Length = 470 Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 162/465 (34%), Positives = 260/465 (55%), Gaps = 21/465 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +L++N+ + VA + G+LQEI E + + GNIY GR+ +++PG+ AAFV+I Sbjct: 1 MANQLVINIQEEKVNVAILSDGVLQEIFSEED--ESLSGNIYVGRIEKIIPGLNAAFVNI 58 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G ++ FL +DI KQ+ V++G ++VQV D +GTKG +LT Sbjct: 59 GGNRNGFLKLTDIT-----------KQYISEVTKSPVKEGIKILVQVKHDAIGTKGPQLT 107 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I+L R+LV+ P + GVS++++ ER RL+++ + + G +IRTAAE V E Sbjct: 108 GKISLAGRFLVYFPLSKVRGVSKKVQEPKERVRLQEL-SRSLAKNDGVVIRTAAEFVPEE 166 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 +A + LK W KV++ KR + L E +LR+ + ++D + V++R YE Sbjct: 167 YVAEEFNQLKSEWRKVLQSFKRARKIKLLRREPTTVDYILRERLNKDIDEVHVNTREIYE 226 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + E + + K Y +FD + ++I + ER + L SGGY+ +D TEAM Sbjct: 227 KVKEVSKR----LAKKPMIYFFEGDLFDKLCIYSQIGQLQERIIHLPSGGYIALDTTEAM 282 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T D+N+ +FV +N D + TN+EA IARQLRLRN+GGI+I+DFIDM ++ + R+ Sbjct: 283 TVFDVNSASFVSEKNHADLAYKTNVEAAYEIARQLRLRNIGGIVIVDFIDMPSKTYYDRL 342 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L+QA+ D + GF+ LGL+EMTRKR SI+ +L + CP C G G V + V Sbjct: 343 TKELQQAIRNDSAHIELIGFTKLGLLEMTRKRRSPSIDQLLFSGCPICKGTGRVVSPHIV 402 Query: 421 CYEIMREIVRVHHA--YDSDRFLVYAS-PAVAEALKGEESHSLAE 462 ++ E+ ++ + Y S + +++ E +K S ++ E Sbjct: 403 VRRVINELSKIENISEYSSVKVILHQRLSGYTEKIKKSLSSTIVE 447 >UniRef50_Q1QX63 Ribonuclease E n=5 Tax=Gammaproteobacteria RepID=Q1QX63_CHRSD Length = 1175 Score = 278 bits (710), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 272/487 (55%), Gaps = 13/487 (2%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T P E RVA +DG L ++ IE AR NIY+GR++R+ P ++AAFVD G + Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGRITRIEPSLEAAFVDFGAE 63 Query: 64 KAAFLHASDIMPH--TECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I T+ +G +I E++++GQ+++VQV K+ G KGA LTT Sbjct: 64 RHGFLPLKEISREYFTKEPSGRP-------NIKEVLKEGQEVIVQVDKEERGNKGAALTT 116 Query: 122 DITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVGE 179 I+L R+LV MP G +S+RIE + +R +LK + + ++ G I+RTA G Sbjct: 117 FISLAGRFLVLMPNNPRAGGISRRIEGD-DRAQLKDAMGQLTVPDKMGVIVRTAGIGRSP 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL +VW + E + + +Y E + R +RD+ ++ + +DS + Sbjct: 176 EELQWDMDYLVQVWEAITEEAGKRSAPFLIYRESNVIIRAMRDYLRHDIGEVLIDSPEVH 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E L F + +P +K++ Y P+F F +E++I+ A +R+V+L SGG ++ID TEA Sbjct: 236 EEALHFIRQVMPSYQNKIKLYADDVPLFSRFQIESQIETAYQREVKLPSGGAVVIDHTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T TN+EA IARQLRLR++GG+++IDFIDM ++R Sbjct: 296 LVSIDINSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPAKNQRE 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + AL DR + + S GL+EM+R+R R S+ CP C+G+GT++ V + Sbjct: 356 VENRVRDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRS 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR I S + VA L E+ L ++E G QV + P Sbjct: 416 ISLSIMRLIEEEAMKERSSQIRAILPVPVATYLLNEKRSVLNDIEQRQGVQVVLLPNPDM 475 Query: 480 NQEQFDV 486 + +DV Sbjct: 476 DTPHYDV 482 >UniRef50_Q0VQP0 Phosphoric diester hydrolase n=5 Tax=Gammaproteobacteria RepID=Q0VQP0_ALCBS Length = 1074 Score = 278 bits (710), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 156/428 (36%), Positives = 254/428 (59%), Gaps = 8/428 (1%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T P E RVA +DG L ++ IE R NIYKG+++RV P ++AAFVD G + Sbjct: 4 MLINATHPEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVDFGAE 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVR-DISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + FL +I + ++ K R +I E++++GQ+++VQV K+ G KGA LTT Sbjct: 64 RHGFLPLKEI---SRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEERGNKGAALTTF 120 Query: 123 ITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVV-AEYCDEQGGFIIRTAAEGVGEA 180 I+L RYLV MP G +S+RIE E ER +LK+ + A ++ G I+RTA G Sbjct: 121 ISLAGRYLVLMPNNPRAGGISRRIEGE-ERAQLKEALGALNIPDEMGVIVRTAGLGRSAE 179 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 EL D YL ++WT + + + + + +Y E + R +RD+ ++ + +DS+ Y+ Sbjct: 180 ELQWDLNYLLKLWTSIDDASQDRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSKKVYD 239 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 F + + + K++ Y P+F F +E++I+ A ER+V+L SGG ++ID TEA+ Sbjct: 240 EAQGFVQQVMQDFQHKIKLYDDETPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEAL 299 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 ++DIN+ ++++T TN+EA + IARQLRLR++GG+I++DFIDM ++R V Sbjct: 300 VSIDINSSRATKGADIEETALQTNLEAAEEIARQLRLRDIGGLIVVDFIDMGPARNQRDV 359 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 + + AL DR + + S GL+E++R+R R S+ CP C G+G ++ V+++ Sbjct: 360 ENRMRDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGQGHIRDVKSL 419 Query: 421 CYEIMREI 428 I+R I Sbjct: 420 ALSILRLI 427 >UniRef50_Q9ZAC0 Cytoplasmic axial filament protein (Fragment) n=3 Tax=Bacteria RepID=Q9ZAC0_AGGAC Length = 243 Score = 276 bits (707), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 147/243 (60%), Positives = 185/243 (76%), Gaps = 1/243 (0%) Query: 248 EYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINT 307 E+IP +T KL Y G QP+FD++ VE I AL+++V LKSGGYLII+QTEAMTT+DINT Sbjct: 1 EFIPNLTDKLILYAGNQPLFDVYSVETGIHNALDKRVNLKSGGYLIIEQTEAMTTIDINT 60 Query: 308 GAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQA 367 GAFVGHRNL++TIFNTNIEAT+AIA+QL+LRNLGGIIIIDFIDM E+HR RV L + Sbjct: 61 GAFVGHRNLEETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQKEEHRTRVFGILAGS 120 Query: 368 LSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMRE 427 + + F ++G + ++E VLC +CP C GRG VKTVETVCYEIMRE Sbjct: 121 PCRRPGENQCQWFHSVGAGGNDPQTHPRNLERVLCGDCPACQGRGRVKTVETVCYEIMRE 180 Query: 428 IVRVHHAYDSDRFLVYASPAVAEALKGEESHS-LAEVEIFVGKQVKVQIEPLYNQEQFDV 486 I+RVHH + S++F+VYAS AVA+ L EESH LAE+E+F+GKQ++V+ E Y QEQFDV Sbjct: 181 IIRVHHVFASEQFVVYASHAVADYLINEESHGLLAELEVFIGKQIQVKTEVFYTQEQFDV 240 Query: 487 VMM 489 V+M Sbjct: 241 VVM 243 >UniRef50_A3ZLB1 Ribonuclease E n=4 Tax=Planctomycetaceae RepID=A3ZLB1_9PLAN Length = 588 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 139/373 (37%), Positives = 223/373 (59%), Gaps = 1/373 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERE 152 I E+ ++G +++VQV+K+ +G+KG L+T I++P RYLV MP VGVS++IE + R Sbjct: 172 IQEIFKRGDEVLVQVIKEGIGSKGPTLSTYISIPGRYLVLMPALGRVGVSRKIEDDQVRR 231 Query: 153 RLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYG 211 RL+ + E +G GFI+RTA + + EL+ D AYL R+W ++ R K +Y Sbjct: 232 RLRSTLLELSPPKGLGFIVRTAGQERNKKELSRDMAYLLRLWKVIVRRLKNTTGPCDIYE 291 Query: 212 ELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFD 271 E + R +RD +++D I VDS YE EF +P ++L+ Y + P+F + Sbjct: 292 ESDMIIRTIRDIFSSDVDSIYVDSEPAYERAKEFLQLVMPRHVNRLKKYESKDPLFHKYH 351 Query: 272 VENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAI 331 ++ EI R +R+V L+ GG ++IDQTEA+ +D+N+G F ++ + N+ A + I Sbjct: 352 LDEEIARINQREVPLRRGGSIVIDQTEALVAIDVNSGNFRYDGTAEEAAYQLNMMAAKEI 411 Query: 332 ARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRK 391 ARQLRLR+LGG+++ DFIDM E HRR V +L ++ +DR +T + S GL+EMTR+ Sbjct: 412 ARQLRLRDLGGVVVNDFIDMRREKHRRNVERALRDSVKRDRARTKILKTSPFGLIEMTRQ 471 Query: 392 RTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEA 451 R R S++ + +CP C GRG VK+ E++ E++R ++ H + + + VA Sbjct: 472 RIRPSLKRSVFKDCPCCKGRGVVKSAESMAIEVVRMLLAAAHHDGASHVTIRVNDEVATY 531 Query: 452 LKGEESHSLAEVE 464 L ++ LA +E Sbjct: 532 LNNKKRRELARIE 544 Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 38/77 (49%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M E+L+NV+ P E R+A ++ GIL+E ++ER ++ VGNIYKG V + P +QAAFVD Sbjct: 1 MKKEMLINVSQPEECRIAIVEDGILEEFYLERTSQDNYVGNIYKGVVVNLEPSIQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPH 76 G+ K FLH SD+ P Sbjct: 61 FGVGKNGFLHISDVEPQ 77 >UniRef50_Q2SK60 Ribonucleases G and E n=3 Tax=Gammaproteobacteria RepID=Q2SK60_HAHCH Length = 1056 Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 152/425 (35%), Positives = 248/425 (58%), Gaps = 7/425 (1%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T P E RVA +DG L ++ IE R NIYKG+++R+ P ++AAFVD G + Sbjct: 4 MLINATQPEELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDFGAE 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I E + QK + +I +L+++GQ++++QV K+ G KGA LTT I Sbjct: 64 RHGFLPLKEI--SREYFKSQPQKGGKM-NIKDLLQEGQEIIIQVDKEERGNKGAALTTFI 120 Query: 124 TLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVGEAE 181 +L RYLV MP G +S+RIE + +R++LK ++ + G IIRTA G E Sbjct: 121 SLAGRYLVLMPNNPRAGGISRRIEGD-DRDQLKDAMSGLTVPKDMGLIIRTAGVGRSSKE 179 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D YL + W + + +Y E + R RD+ ++ + +D ++ Sbjct: 180 LQRDLDYLLQFWDSIRHASDSKPAPFLIYQESNVVIRATRDYLRQDIGEVLIDHPQVHQD 239 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 L F +P ++++ Y P+F+ + +E++I+ A +R+V+L SGG ++ID TEA+ Sbjct: 240 ALNFVKAVMPNFENRIKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDPTEALV 299 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 ++DIN+ ++++T TN+EA IARQLRLR++GG+I+IDFIDM ++R V Sbjct: 300 SIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLIVIDFIDMTPNKNQREVE 359 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 + L++AL DR + + S GL+EM+R+R R S+ CP C G+G+++ VE++ Sbjct: 360 NRLKEALELDRARVQIGKISRFGLLEMSRQRLRPSLGETRNEMCPRCKGQGSIRGVESLA 419 Query: 422 YEIMR 426 +MR Sbjct: 420 LSVMR 424 >UniRef50_Q1NUM8 Ribonuclease E and G n=2 Tax=Deltaproteobacteria RepID=Q1NUM8_9DELT Length = 715 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 147/431 (34%), Positives = 254/431 (58%), Gaps = 7/431 (1%) Query: 4 ELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +LL+N P E R+A ++ ++ +IE +R I GNIYKGRV+ V +QAAFVDIGL Sbjct: 223 KLLINTDEPEECRLALLENSKVEGFYIESVSRARIKGNIYKGRVTSVEANLQAAFVDIGL 282 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K FL ++I P + + + I ++V++GQ+++V+VVK+ G KG LTT Sbjct: 283 EKNGFLSFNEIHPEYYQQEVDPETSWKNLKIQDMVKKGQEVLVEVVKEGSGNKGPSLTTY 342 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAE 181 ++LP R+LV MPG+ G+S++I+ E R +L+++V +G G+I+RTA++ + + Sbjct: 343 LSLPGRFLVLMPGSDSAGISRKIDDEEHRNKLREMVEGLNIPEGVGYIVRTASQEITKTA 402 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L+ D +L +W+++ + + LY E + R LRD +++ I VD E Sbjct: 403 LSQDLRFLLNLWSEIRKGGQSLPAPSLLYKEQNIISRFLRDHYTSDIREILVDEEDAAEQ 462 Query: 242 LLEFTSEYIPEMTSK---LEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + F + +P K ++ + G QPIF + VE +I+ + V L SGG ++I+ TE Sbjct: 463 VRNFL-QLLPASQRKKTTVKLHQGSQPIFHQYHVEKQIEEMFQPTVPLPSGGSIVINPTE 521 Query: 299 AMTTVDINTGAFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 A+ +D+N+G R+ +++IF N+EA + +ARQLR+R+LGG+I++DFIDM + H Sbjct: 522 ALVAIDVNSGRTSSKDRDFEESIFIANMEAAEELARQLRMRDLGGLIVVDFIDMRSAAHT 581 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V + + + +D+ K + S GL++++R++ ++ CP C GRG +++V Sbjct: 582 REVEKKVRECMKRDKAKVDFSKISKFGLMQISRQKMAAPLQTTSYKTCPYCEGRGLIRSV 641 Query: 418 ETVCYEIMREI 428 E + +R+I Sbjct: 642 ENLALSHLRQI 652 >UniRef50_C9LKU5 Cytoplasmic axial filament protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKU5_9FIRM Length = 472 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 164/457 (35%), Positives = 258/457 (56%), Gaps = 26/457 (5%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 ++++ + ET +A L ++ IE++ IVG IYKG V ++P + FVDIG+ K Sbjct: 4 VILSDSTDETILAVTRQHKLVDLEIEQQINTEIVGCIYKGIVKNIVPAVDGIFVDIGIGK 63 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 AFL D++ +K+F +G ++ QV+K KGA +T I+ Sbjct: 64 NAFLRRKDLL---------NEKRFPT--------EGSPILAQVIKSDTDMKGALITEKIS 106 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 + +Y V + G ++GVS++I SES R+RLK++ E C E G IIRTAAE E Sbjct: 107 MLGKYAVTLSGTGYIGVSKKIRSESVRKRLKEIGKEICAEHMGLIIRTAAENADMDEFRK 166 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 D LK W + +R + ++ LY E + + LRD+ + + + D+R YE + + Sbjct: 167 DITRLKENWDIIQKRFRMEKSPTLLYRESDIIVKALRDYVNKGTEILITDNRKIYERICK 226 Query: 245 FT-SEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 SE+ E K+ Y R P+ ++E +I +R+VEL SGG LII+ TEA+T + Sbjct: 227 LNESEHTIE-PDKISLYKERMPLLKKEEIEEQIHLLFKRRVELPSGGSLIIEDTEALTVI 285 Query: 304 DINTGAF----VGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 D+N+GAF + H ++ ++ N EA IARQ+RLR +GG+I+IDFIDM E+ ++ Sbjct: 286 DVNSGAFNRQGIPH---EEAVYLINQEAAIEIARQVRLRGIGGMILIDFIDMQKENQKKD 342 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 ++ L++ L KD+VK+ V G ++LGLVEMTRKRT S+ C+ CP C+G G + +V++ Sbjct: 343 IVGILQRELKKDKVKSIVCGMTSLGLVEMTRKRTTHSLIKNYCDICPICNGTGHILSVQS 402 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEE 456 V +I RE+ V + ++ P VA LK E+ Sbjct: 403 VIQQIHRELETVKRYGGARDLVIRCHPEVAARLKEEQ 439 >UniRef50_Q6AIU3 Probable RNAse E n=1 Tax=Desulfotalea psychrophila RepID=Q6AIU3_DESPS Length = 883 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 157/435 (36%), Positives = 248/435 (57%), Gaps = 12/435 (2%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 LL+N P E R+A ++ G L+ IH+ R NIYK +V V +QAAFVD G Sbjct: 381 LLINAEEPEECRLALLEDGRLESIHVSTVTRAQTKNNIYKAKVVAVEANLQAAFVDYGTV 440 Query: 64 KAAFLHASDIMPH------TECVAGE-EQKQFTVRDISELVRQGQDLMVQVVKDPLGTKG 116 K FL S+I P +E E++++ I +++ +GQ+L+VQVVK+ +G KG Sbjct: 441 KNGFLPFSEIHPEYYRADLSESARKNVEERRWRRLKIEDVMARGQELLVQVVKEEVGKKG 500 Query: 117 ARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAE 175 A +TT ++LP R +V MPG+ G+S++I E R +L+ + +G G+I+RTA+ Sbjct: 501 ANMTTYLSLPGRCVVLMPGSDSAGISRKIVGEERRSQLRDTMRSLGIPEGTGWIVRTASV 560 Query: 176 GVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDS 235 + E LA D YL ++W V E+ + + +Y + R LR+ D + I VD+ Sbjct: 561 DINEEALARDVTYLLKLWEDVREKGQEIKDVGLIYEDHRSVMRFLREHYDPSIQEILVDA 620 Query: 236 RLTYEALLEFTSEYIP--EMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLI 293 L E + EF S +P + K+ + G +PIF+ F VE++I+ + +V L SGG ++ Sbjct: 621 PLALEQVNEFVS-MLPANQQNVKVRLHKGSRPIFNQFSVEDQIESIYQPQVSLPSGGSIV 679 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 ID TEA+ +D+N+G+ +N D++IF N+EA ARQLRLR+LGG++++DFIDM N Sbjct: 680 IDPTEALVAIDVNSGSTSKGKNFDESIFQANMEAASEFARQLRLRDLGGLVVVDFIDMRN 739 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGT 413 + H V ++ A+ +D+ K S GL++++R++ IE C C GRG Sbjct: 740 KKHINAVEKQVKIAMKRDKAKVDFTRISKFGLMQISRQKLGSPIEAGAYRVCQHCKGRGI 799 Query: 414 VKTVETVCYEIMREI 428 V+ VET+ +R I Sbjct: 800 VRAVETLALFYLRRI 814 >UniRef50_A6LDG7 Ribonuclease G n=21 Tax=Bacteria RepID=A6LDG7_PARD8 Length = 525 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 257/472 (54%), Gaps = 26/472 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +EL+V+V P E +A ++ L E+ E VG+IY G+V +++PG+ AAF+D+ Sbjct: 1 MISELVVDVQPKEVSIAVLEDKSLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFIDV 60 Query: 61 GLDKAAFLHASDIMP-------HTECVAGEEQKQFTVR------------DISELVRQGQ 101 G K AFLH D+ P + + + + +K + IS++++ GQ Sbjct: 61 GYKKDAFLHYLDLGPNFNTQQKYLKQLLSDPKKAPVLSKTQILPEIEKNGSISDVLKVGQ 120 Query: 102 DLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY 161 +++VQ+ K+P+ TKG RLT++++ RY+V +P A V VS +I+S ER RL++++ Sbjct: 121 EVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSVSTKIKSSEERARLRQLIQSI 180 Query: 162 CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 221 + I+RT++EG AEL + L + W + + + + +Y E A +LR Sbjct: 181 KPKNFSVIVRTSSEGKRVAELDHELKTLMKRWEDNIVKVPKLKAPAIIYEETARTVALLR 240 Query: 222 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 281 D + I V+ + Y + ++ S P ++ YTG PIFD F V +I+ Sbjct: 241 DIFNPSFQNIYVNDKEVYNNVRDYVSLIAPGREEIVQLYTGELPIFDNFAVTKQIKSLFG 300 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTGA-FVGHRNLDDTIFNTNIEATQAIARQLRLRNL 340 R V KSG YLII+ TEAM +D+N+G G + T + NI A IARQLRLR++ Sbjct: 301 RTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNIAAADEIARQLRLRDM 360 Query: 341 GGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 GGII+IDFIDM +R+++ + +A++ DR K ++ S GL+++TR+R R +++ Sbjct: 361 GGIIVIDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLMQITRQRVRPAMDVD 420 Query: 401 LCNECPTCHGRGTVKTVETVCYEIMREI---VRVHHAYDSDRFLVYASPAVA 449 +CP+C G GTVK + +I V HH +F ++ P VA Sbjct: 421 TSEDCPSCFGTGTVKPSILFTDSLEEKIDCLVNKHHV---KKFTLHVHPYVA 469 >UniRef50_B1VGM2 Ribonuclease E n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VGM2_CORU7 Length = 1190 Score = 275 bits (702), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 155/411 (37%), Positives = 242/411 (58%), Gaps = 17/411 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+V ++ G L E + + ++ +VGNIY GRV VL M+AAF+DIG + A L+AS++ Sbjct: 396 TQVGVVEDGQLVEHFVTSDTQQSMVGNIYLGRVQNVLASMEAAFIDIGTGRNAVLYASEV 455 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 H+ + R I + +R G +MVQV+KDP+G KGARLT I+ RYLV+ Sbjct: 456 NWHSPHL------HSKSRRIDQALRSGDQVMVQVIKDPVGHKGARLTNRISFAGRYLVYF 509 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG + G+S+++ E+ER+RLK+++ QGG IIRTAAE V E + D L + W Sbjct: 510 PGGTTAGISRKL-PEAERKRLKEILQRVVPGQGGAIIRTAAENVAEELIEEDVNRLHKQW 568 Query: 194 -----TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 T+ ERK + LY E + V+RD + + + V+ ++ + ++ Sbjct: 569 LNIEKTEAKERKSKGAKPVTLYEEPNMLITVIRDLFNEDFSELLVEGDKSWRMVRDYMGR 628 Query: 249 YIPEMTSKLEHYTGRQ----PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 PE+ ++ + Q +F +++++ +AL RKV L SGG+L+ID TEAMT +D Sbjct: 629 MAPELMDRVHKWHPEQHADEDVFAAHRLDDQLAKALCRKVWLPSGGHLVIDHTEAMTVID 688 Query: 305 INTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG+FVG NL++T+ N+EA + I RQ+RLR++GG+I++DFIDM E+++ VL Sbjct: 689 VNTGSFVGSGGNLEETVTENNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLEENQDLVLRR 748 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L + L +DR V+ ++LGLV++TRKR + C C GRG + Sbjct: 749 LIEYLGRDRTHHKVSEVTSLGLVQITRKRLGAGLLETFSTTCECCDGRGVI 799 >UniRef50_A8PMW2 Ribonuclease E (RNase E) n=1 Tax=Rickettsiella grylli RepID=A8PMW2_9COXI Length = 778 Score = 274 bits (700), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 150/431 (34%), Positives = 252/431 (58%), Gaps = 13/431 (3%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N P E RVA ++ L ++ +E + NIYKG++SR+ ++AAF+ G + Sbjct: 8 ILINANQPGEIRVALLEANKLSDLDMEYTGQEQKKSNIYKGKISRIEQSLEAAFISYGAE 67 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I P + G K + ++ I ++ GQ+LMVQ+ K+ G KGA LTT I Sbjct: 68 RHGFLPFKEIAP--SYLKG---KNYDLQSIKHSLKVGQELMVQIEKEERGDKGAALTTYI 122 Query: 124 TLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDE-----QGGFIIRTAAEGV 177 TLP YLV MP G +S+RIE + RE ++ ++ + ++ G I+RTA G Sbjct: 123 TLPGSYLVLMPNNPGAGGISRRIEGDERRE-MQDLMHDLIEQTELSKNMGLILRTAGVGR 181 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 +EL +D L + W + + + ++ E L R +RD+ ++D I VD + Sbjct: 182 EFSELKNDLNLLIQQWNAIQKAYHERPAPFLIFQEGDLITRSVRDYLRRDIDEIIVDDKK 241 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 +E + ++ + P+ S++ Y P+F FD+E ++ A +RK+EL SG ++ID+T Sbjct: 242 IHEKIKQYIEQIRPDFVSRISLYQNHIPLFMYFDIEEAVESAFKRKIELPSGATIVIDRT 301 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+ ++DIN+G + ++++T TN+EA + IA QLR+R+LGG+I+IDFIDMN+E+++ Sbjct: 302 EALVSIDINSGRSTKNEDIEETAVATNLEAAKEIAHQLRVRDLGGLIVIDFIDMNSEENQ 361 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R+V + A+ KDR + + S GL+EM+R+R R S+ C C+G+GTV+T+ Sbjct: 362 RKVENCFRLAVKKDRARIQIGRISTFGLLEMSRQRLRHSLGKANETLCSRCNGQGTVRTI 421 Query: 418 ETVCYEIMREI 428 E+ ++R I Sbjct: 422 ESFALFLLRSI 432 >UniRef50_B0VED2 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=16 Tax=Acinetobacter RepID=B0VED2_ACIBY Length = 1110 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 171/485 (35%), Positives = 259/485 (53%), Gaps = 7/485 (1%) Query: 5 LLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T +E RVA I G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 4 MLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I ++ A Q +I EL+ +G +L+VQV K+ G KGA L+T I Sbjct: 64 RQGFLSMREIA-NSYFQADPRQ----TSNIRELITEGTELLVQVEKEERGNKGAALSTFI 118 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAEL 182 +L RYLV MP G R S S RE LK+++A +G I+RTA G + EL Sbjct: 119 SLAGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEEL 178 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D +L +W ++ + ++ E + R +RD+ ++ I +DS Y Sbjct: 179 QLDLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEA 238 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 F +P KL+ YT +P+F F +E++IQ A ER+V+L SGG ++IDQTEA+ + Sbjct: 239 YNFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVS 298 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +DIN+ ++++T NTN+EA + IARQLRLR++GG+++IDFIDM E ++R V Sbjct: 299 IDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEA 358 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L +A DR + S GL+EM+R+R R S+E CP CHG G V+ + ++ Sbjct: 359 KLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSL 418 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 IMR++ + V +A L E+ HSL +E G +V V P Sbjct: 419 SIMRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETP 478 Query: 483 QFDVV 487 +++ Sbjct: 479 HYEIA 483 >UniRef50_Q6FEY0 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FEY0_ACIAD Length = 1138 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 168/484 (34%), Positives = 261/484 (53%), Gaps = 7/484 (1%) Query: 5 LLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T +E RVA I G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 4 MLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAQ 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I + + + ++ +R EL+ +G +L+VQV K+ G KGA L+T I Sbjct: 64 RQGFLSMREIA--SSYLHADPRQTSNIR---ELITEGTELLVQVEKEERGNKGAALSTFI 118 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAEL 182 +L RYLV MP G R S S RE LK+++A +G I+RTA G + EL Sbjct: 119 SLAGRYLVLMPNNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQEEL 178 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D +L +W+++ + ++ E + R +RD+ ++ I +DS Y Sbjct: 179 QLDLQHLLDLWSQIQSTSNSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEA 238 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 F +P KL+ YT +P+F F +E++IQ A ER+V+L SGG ++IDQTEA+ + Sbjct: 239 YNFVKAVMPRQLDKLKTYTLNEPLFAHFAIESQIQTAYEREVKLPSGGSIVIDQTEALVS 298 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +DIN+ ++++T NTN+EA + IARQLRLR++GG+++IDFIDM + ++R V Sbjct: 299 IDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEA 358 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L +A DR + S GL+EM+R+R R S+E CP CHG G V+ + ++ Sbjct: 359 KLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSL 418 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 IMR++ + V +A L E+ HSL +E G +V V P Sbjct: 419 SIMRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETP 478 Query: 483 QFDV 486 +++ Sbjct: 479 HYEI 482 >UniRef50_Q4JWU2 Ribonuclease E n=2 Tax=Corynebacterium jeikeium RepID=Q4JWU2_CORJK Length = 1013 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 152/412 (36%), Positives = 239/412 (58%), Gaps = 23/412 (5%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+V ++ G L E + + ++GN+Y GRV VL M+AAFVDIG + A L+A ++ Sbjct: 350 TQVGVVEDGQLVEHFVADATHQSLIGNVYLGRVQNVLGSMEAAFVDIGTGRNAVLYAGEM 409 Query: 74 ---MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYL 130 PH + R I + +R G ++VQV+KDP+G KGARLT I+ RYL Sbjct: 410 DWRSPHLHSKS---------RKIDQALRPGDQILVQVLKDPIGHKGARLTNRISFAGRYL 460 Query: 131 VFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLK 190 V+ P + G+S+++ + ER+RLK ++ E GG IIRTAAE E ++ D L+ Sbjct: 461 VYFPAGTTAGISRKLPA-GERKRLKDILGEVITGDGGAIIRTAAENATEEQITEDVQRLE 519 Query: 191 RVWTKVM-----ERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEF 245 + W ++ ER + LY E + +V+RD +A+ + +D +++A+ ++ Sbjct: 520 KRWQEIQKLENKERNSKGSKPVTLYEEPNMLIQVVRDVFNADFSELIIDGDKSWQAVRDY 579 Query: 246 TSEYIPEMTSKLEHYT-GR---QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 PE+ ++ + G+ Q F D++ ++++A+ RKV L SGGYLIID TEAMT Sbjct: 580 LGRTSPELMDRVHKWNRGKHDGQDAFAPLDLDQQLEKAMARKVWLPSGGYLIIDHTEAMT 639 Query: 302 TVDINTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+NTG+FVG NL+ T+ N+EA + I RQLRLR++GG+I++DFIDM + ++ V Sbjct: 640 VIDVNTGSFVGSGGNLEATVTENNLEAAEEIVRQLRLRDIGGMIVVDFIDMLLQQNQDLV 699 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 L L + L +DR + + ++LGLV++TRKR + C C GRG Sbjct: 700 LRRLSEFLGRDRTRHKLGEVTSLGLVQLTRKRLGTGLLETFSTPCEACDGRG 751 >UniRef50_Q1MQA2 Ribonucleases G and E n=2 Tax=Desulfovibrionaceae RepID=Q1MQA2_LAWIP Length = 666 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 151/431 (35%), Positives = 238/431 (55%), Gaps = 3/431 (0%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 + ++L++V P E VA G L E IE I GNIYKG ++ + +QAAF++ Sbjct: 175 INKKMLISVIPGEQVEVAISSDGQLFEYFIEMNHHAKIRGNIYKGVINNIDANLQAAFIN 234 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G K FL ++ P E K I ++++ GQ+++VQVVK+P G KGA L Sbjct: 235 YGNTKNGFLQIDEVHPEYYLQPHEPTKLKKYPPIQKVLKAGQEILVQVVKEPTGNKGAFL 294 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVG 178 TT ++L R+LV PG +G+S+++E E ER RL++++ G G I+RT + G Sbjct: 295 TTWLSLAGRFLVLTPGQEQIGISRKVEDEEERTRLRELIKGLDPGSGLGAIVRTVSIGTS 354 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + L D ++LKRVW ++ ++ ++ +Y E LA R +RD+ ++ I VD T Sbjct: 355 KTTLQKDLSFLKRVWREIRKKATTEKSPCLIYEEPGLATRAVRDYLADDITEIWVDDPET 414 Query: 239 YEALLEFTSEYIPEMTSKLEHY-TGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 +A+ E T+ P T + Y +P+++ F + +I + R+V + SGG L+ DQT Sbjct: 415 KQAIQEVTTLLFPRKTKLVHLYQNNNEPLWEHFKLNKQIIQVHSREVIMPSGGRLVFDQT 474 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+ +DIN+G G N + + TN+EA IA+QLRLR++GG I+IDFI+M H Sbjct: 475 EALMAIDINSGRIAGKTNFESMAYRTNMEAAATIAQQLRLRDIGGQIVIDFIEMKEPAHC 534 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V L+ A+ DR + V S+ GL+++ R+R S + CP C G G + + Sbjct: 535 RDVEKELQLAMKADRARHDVGKMSSFGLLQVVRQRIGSSAISISQETCPYCQGTGQRRNI 594 Query: 418 ETVCYEIMREI 428 E + +REI Sbjct: 595 EWQAIQTLREI 605 >UniRef50_C5CEM0 Ribonuclease, Rne/Rng family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEM0_KOSOT Length = 481 Score = 271 bits (693), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 262/472 (55%), Gaps = 43/472 (9%) Query: 13 ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASD 72 E R+A +D G +QE+ E +GNIY G++ V+P ++AAFV+IG+ K FL D Sbjct: 20 EVRIAILDEGKIQEVFFEEMDNESYMGNIYLGKIENVVPSLEAAFVNIGIGKNGFLRFKD 79 Query: 73 IMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVF 132 + + + +G+ ++VQV KDP+G+KG +LT I++P R LV+ Sbjct: 80 TRNNQK------------------LEKGKKVLVQVKKDPIGSKGPQLTLKISIPGRCLVY 121 Query: 133 MPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRV 192 MP + HVG+S++I ++ERERL + + G I RTAA GVGE L + L+ + Sbjct: 122 MPFSKHVGISKKITDQAERERLISIAKGIIENDEGIIFRTAANGVGEDTLREELENLRTI 181 Query: 193 WTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE 252 W K+ E+ +R + LY E +L + +LR+ ++ I VDS + ++ S++ Sbjct: 182 WKKINEKFRRARKPQILYEEPSLVEYILRERLTEDVKEIVVDSEDLWHDVVAGISKF--- 238 Query: 253 MTSKLEHYTGRQPIF-----DLF---DVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 +G +PI D F + +++ R V L +GG + ID+TEAMT +D Sbjct: 239 -------KSGFKPIVRYVEEDAFLHEGIYEKMKVLYTRVVPLPNGGNIFIDKTEAMTVID 291 Query: 305 INTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSL 364 +N+ + ++ + NTN+EA IARQLRLRN+GGII+IDFIDM +E R++V+ L Sbjct: 292 VNSASNTHGSDVSEMSLNTNLEAAVEIARQLRLRNIGGIIVIDFIDMKSEADRKKVISLL 351 Query: 365 EQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEI 424 + L KD+ + + GF+ LGL+EMTRKR+ +I + + CP C G G +++ + + Sbjct: 352 SEELKKDKAHSLILGFTRLGLLEMTRKRSTATINSRIYSTCPICRGTGQIESPKITYQRL 411 Query: 425 MREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIE 476 + ++ R+ D+ + A+ V + L G + EV+ + KQ K +I+ Sbjct: 412 VSDLQRLFK----DKKIKSATVQVYQNLSGILT---PEVQKQLSKQFKREIK 456 >UniRef50_Q83MU7 Ribonuclease G n=2 Tax=Tropheryma whipplei RepID=Q83MU7_TROWT Length = 549 Score = 271 bits (693), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 159/404 (39%), Positives = 237/404 (58%), Gaps = 16/404 (3%) Query: 12 SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHAS 71 S+ +V ++ GIL E ++ R A +VGNIY GRV VLPGM+AAFVDIG + A L++ Sbjct: 76 SDVQVGILEEGILVEYYMARGASSSLVGNIYMGRVQNVLPGMEAAFVDIGCGRNAVLYSG 135 Query: 72 DIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLV 131 + + + + I VR+G ++VQV KD + KG R+T ++L RYLV Sbjct: 136 EAV----------WEGVKAQSIENTVREGSSVLVQVTKDAVANKGPRVTGQLSLAGRYLV 185 Query: 132 FMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKR 191 + PG+ GVS+RI + SER RL+K + ++ IIRTAA G +L +DA L Sbjct: 186 YAPGSG--GVSRRI-APSERARLQKSLKAAVEDVSSLIIRTAAVGATSEQLGNDAKMLCE 242 Query: 192 VWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIP 251 + + E+ + +Y E L R+LRD + + + V+ YE + + + P Sbjct: 243 AYRAIKEKSENATAPSIIYSEPDLLIRLLRDTFNNDFKELIVEGAELYERVNSYLQDVSP 302 Query: 252 EMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFV 311 EM K+ + + +FD + + +I R+L RKV L SGG L++D TEAMT +D+NTG FV Sbjct: 303 EMLGKVSK-SSEEDLFDAYRITEQIDRSLNRKVLLPSGGSLVVDHTEAMTVIDVNTGKFV 361 Query: 312 G-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSK 370 G +L+ T+ + N+EA I RQ+RLR+LGGI++IDFIDM +++R V + L +ALS Sbjct: 362 GTSSSLEQTVTDNNLEAVDEIVRQIRLRDLGGIVVIDFIDMLLQENRDLVYNRLLEALSL 421 Query: 371 DRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 DR + V ++LGLV+MTRK+ ++E V C C GRG V Sbjct: 422 DRSRHKVAEITSLGLVQMTRKKLGVALEPV-SELCDRCSGRGRV 464 >UniRef50_C0WDS2 Ribonuclease n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDS2_9FIRM Length = 468 Score = 271 bits (693), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 170/479 (35%), Positives = 264/479 (55%), Gaps = 29/479 (6%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 MTA + V+V P ETR+ + L++ +ER +VGNIY+GRVS V+PG+QAAF+D+ Sbjct: 1 MTA-IFVSVKPEETRMGLVFDSKLRDFAVERRGEGNLVGNIYRGRVSNVVPGIQAAFIDL 59 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 + K FL +Q + T +GQ L+VQVVKD GTKG +T Sbjct: 60 NVGKNGFLTL------------HKQDRLT---------EGQMLLVQVVKDCRGTKGPGVT 98 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 ++TLP RY+V P + + +S++I +S R RL+ +V + E G +IRTAA Sbjct: 99 RNVTLPGRYIVLEPFGNRISLSRKITCKSLRTRLRTLVQKSLPEGMGVVIRTAAAKAAAE 158 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 E+ +D L W ++ R K + LY EL L+ R++RD+ ++ +I VD TY Sbjct: 159 EIENDLRQLLASWQVLLRRSKVGRGPQLLYRELDLSIRMIRDYVTKDVQKIIVDDEATYH 218 Query: 241 ALLEFTSEY-IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + E + + E+ + E Y ++ +F + + EI +R V L GG L+ D TEA Sbjct: 219 TVEELLQDMGLTEI--RTEWYQEKEDLFTHYGLNEEIASISDRVVPLPGGGSLVFDYTEA 276 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 MT +D+N+G + + ++T TN EA IARQLRLR++GGII+ DFIDM ++ + Sbjct: 277 MTVIDVNSGHYSTGSDREETSLATNREAALEIARQLRLRDIGGIIVADFIDMERKEEQEE 336 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 +L L + + DR+K V G +AL LVEMTR + R ++ + CP C G G V++ ET Sbjct: 337 ILDLLRREFAMDRMKPRVMGMTALNLVEMTRMKARRNLFGTVYTTCPMCQGSGRVESPET 396 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYA-SPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 V EI R + ++ + R LV + P V E ++ H + ++E G ++++ P Sbjct: 397 VYVEIRRRLRSLYLDHAMARSLVLSVHPLVEEWIR---IHGMKDMEQEFGAKIRLVSNP 452 >UniRef50_Q7MM07 Ribonuclease E n=15 Tax=Gammaproteobacteria RepID=Q7MM07_VIBVY Length = 1036 Score = 271 bits (693), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 167/492 (33%), Positives = 266/492 (54%), Gaps = 19/492 (3%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE NIYKGR++RV P ++AAFVD G + Sbjct: 4 MLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYGAE 63 Query: 64 KAAFLH----ASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 + FL A + P G I E++ +GQ+++VQ+ K+ G+KGA L Sbjct: 64 RHGFLPLKEIAKEYFPDGYSYQGRP-------SIKEVLTEGQEVIVQIEKEERGSKGAAL 116 Query: 120 TTDITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGV 177 TT I+L YLV MP G +S+RIE + ER LK ++ QG G I+RTA G Sbjct: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKSALSTLELPQGMGLIVRTAGVGK 175 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 EL D L + W + + + + ++ E + R +RD+ ++ I +DS Sbjct: 176 SAEELEWDLNVLLKHWAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNT 235 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 YE E P+ ++++ Y G P+F + +E++I+ A +R+V L SGG ++ID T Sbjct: 236 IYERAKEHIQLVRPDFVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPT 295 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+T++DIN+ ++++T NTN+EA IARQLRLR+LGG+++IDFIDM H+ Sbjct: 296 EALTSIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQ 355 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V + L +A+ DR + + S GL+EM+R+R S+ + CP C G G V+ Sbjct: 356 REVENRLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDN 415 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 E++ ++R I ++ + L +A L E+ S+ +E ++VK+ + P Sbjct: 416 ESLALSVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERI--QEVKITVVP 473 Query: 478 LYNQE--QFDVV 487 + E F+V+ Sbjct: 474 NSDMETPHFEVI 485 >UniRef50_C0VHW5 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHW5_9GAMM Length = 1143 Score = 270 bits (691), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 166/462 (35%), Positives = 251/462 (54%), Gaps = 7/462 (1%) Query: 5 LLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T +E RVA I G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 24 MLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAQ 83 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I ++ A Q +I EL+ +G +L+VQV K+ G KGA L+T I Sbjct: 84 RQGFLSMREIA-NSYFKADPRQ----TSNIRELITEGTELLVQVEKEERGNKGAALSTFI 138 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAEL 182 +L RYLV MP G R S S RE LK+++A +G I+RTA G + EL Sbjct: 139 SLAGRYLVLMPNNPKGGGISRQISGSVREELKEILATLNIPRGMSVIVRTAGIGRTQEEL 198 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D +L +W ++ + ++ E + R +RD+ ++ I +DS Y Sbjct: 199 QLDLQHLLDLWAQIQSSASTGPSPMLVHQEAGVVTRAIRDYLRDDVGEILIDSEQAYNEA 258 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 F +P KL+ YT +P+F F +E++IQ A ER+V+L SGG ++IDQTEA+ + Sbjct: 259 YNFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVS 318 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +DIN+ ++++T NTN+EA + IARQLRLR++GG+++IDFIDM + ++R V Sbjct: 319 IDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEA 378 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L +A DR + S GL+EM+R+R R S+E CP CHG G V+ + ++ Sbjct: 379 KLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSL 438 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVE 464 IMR++ + V +A L E+ HSL +E Sbjct: 439 SIMRKVEEIALRERQGEVQVEVPVEIAAFLLNEKRHSLVYLE 480 >UniRef50_D2RM73 Ribonuclease, Rne/Rng family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM73_ACIFE Length = 476 Score = 270 bits (691), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 161/425 (37%), Positives = 242/425 (56%), Gaps = 24/425 (5%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 + V+V P ETR+ ++ L++ +ER + +VGN+Y+ RV V+PG+QAAFVD+ K Sbjct: 4 IFVSVRPEETRMGTVEDDQLRDYAVERNSADNLVGNVYRARVCNVVPGIQAAFVDLNTGK 63 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 FL E + +GQ L+VQVVKD G+KG +T DIT Sbjct: 64 NGFLTLKK---------------------GETLSEGQMLLVQVVKDARGSKGPAVTRDIT 102 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 LP RY+V P S V +S++I +++R+ L+ E + G ++RTAA E E+ + Sbjct: 103 LPGRYVVLEPYGSRVSLSRKISCKTKRKELRDWARELLPDHMGLVLRTAAAHAEEDEIRA 162 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 D L R W ++ R K + LY EL LA R++RD+ ++RI VD T L E Sbjct: 163 DLEQLLRNWDVLVRRSKVGRGPQLLYRELDLAIRLVRDYVTDRVERIIVDEEKTCRRLQE 222 Query: 245 FTSEY-IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 + +P + KL Y G++ +F + ++ +I+ +R V L GGYL+ID TEAMT + Sbjct: 223 MLRDMGLPGIQVKL--YRGKEDLFTFYRLDEDIESLSDRVVWLPGGGYLVIDCTEAMTVI 280 Query: 304 DINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 D+N+G F + D T TN EA + IARQLRLR++GGII+ DFIDM+ E+ + +L Sbjct: 281 DVNSGKFSTGADRDATSMATNREAAREIARQLRLRDIGGIIVADFIDMDREEEQEEILQI 340 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYE 423 L++ + D++K V + L LVEMTR + R+++ +L CP C G G V++ ETV E Sbjct: 341 LKKEFASDKMKPKVIDLTQLNLVEMTRMKARKNLAGILYTTCPLCGGSGRVESPETVYVE 400 Query: 424 IMREI 428 I R + Sbjct: 401 IRRRL 405 >UniRef50_Q11NU1 Ribonuclease G n=10 Tax=Bacteroidetes RepID=Q11NU1_CYTH3 Length = 535 Score = 270 bits (690), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 148/434 (34%), Positives = 243/434 (55%), Gaps = 20/434 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ EL ++ + S R+A I L E E R+ VG+IY G V +V+PG+ AAF+D+ Sbjct: 1 MSNELFISSSQSGDRIALIQEKRLVEYQFEDHTRKFNVGDIYLGTVRKVVPGLNAAFIDV 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQ------------KQFTVR-------DISELVRQGQ 101 G +K AFLH D+ P + + + K+F + +S+++ +G Sbjct: 61 GYEKDAFLHYFDLGPKIKSLTKFTKNAITSASTPALLKKFELEAEIKKDGKVSQVLEKGN 120 Query: 102 DLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY 161 ++VQVVK+P+ TKG RL+ +I+L RYLV +P ++ V VS++I + ER+RL ++++ Sbjct: 121 PILVQVVKEPISTKGPRLSCEISLAGRYLVLVPFSNVVSVSKKITDKEERQRLVRLISSI 180 Query: 162 CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 221 E G IIRT A AEL D L + W + K+ + R + GEL +LR Sbjct: 181 RPENFGVIIRTVASNKEVAELDKDLRNLVKTWEDGIAILKKARPRDLIIGELDRTSSILR 240 Query: 222 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 281 D + D I VD++ Y+ L + P+ ++ + G+ +F+ VE +++ Sbjct: 241 DMLNESFDSINVDTKELYDDLRSYIKNIAPDKERLVKLHQGKTKMFESTGVEKQLKTLFG 300 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNL 340 + V L GGYLII+ TEA+ +D+N+G + + ++T +TN+EA + +ARQLRLR++ Sbjct: 301 KSVSLSGGGYLIIEHTEALHVIDVNSGNKSNNETSQEETALHTNLEACREVARQLRLRDM 360 Query: 341 GGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 GGII++DFIDM N D+R+ + ++ + DR K + S GL+++TR+R R + Sbjct: 361 GGIIVVDFIDMKNLDNRKVIYERMKLEMKDDRSKNVILPLSKFGLMQITRERVRPQTNLI 420 Query: 401 LCNECPTCHGRGTV 414 CPTC+G G + Sbjct: 421 TMEVCPTCNGTGKI 434 >UniRef50_B8IYX2 Ribonuclease, Rne/Rng family n=10 Tax=Desulfovibrionales RepID=B8IYX2_DESDA Length = 1076 Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 160/476 (33%), Positives = 259/476 (54%), Gaps = 3/476 (0%) Query: 5 LLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 + ++V P E VA + G L E +++ +R I GNIYKG + + +QAAFV G Sbjct: 601 MFISVLPGEQVEVALTEDGQLLEYYLDMLHQRKIKGNIYKGVIHNIDTNLQAAFVSYGAG 660 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 K FL +I P E K I ++++ GQ+++VQVVK+P G+KGA LTT + Sbjct: 661 KNGFLQIDEIHPEYWLTHHEPAKGKKFPPIQKVLKAGQEVLVQVVKEPTGSKGAFLTTWL 720 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAEL 182 +L R+LV PG +GVS++++ E ER RL++++ QG G I+RT + G + L Sbjct: 721 SLAGRFLVLTPGQEQIGVSRKVDDEEERSRLREMMNGIDPGQGLGVIVRTVSAGTTKTTL 780 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 +D YLKRVW + ++ +Y E L++R +RD+ ++ I VD+ +++ Sbjct: 781 KNDLQYLKRVWRDIRKKATEVTAPSLIYQEPGLSERAVRDYLTDDVGEIWVDNEDVAQSI 840 Query: 243 LEFTSEYIPEMTSKLE-HYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 E + P + + H R +++ F + ++ + R+V L SGG L+ DQTEA+ Sbjct: 841 RETVNLLFPRKSDLVRLHSDVRTSMWERFSLRRQLDQIYTREVLLPSGGRLVFDQTEALM 900 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 VDIN+G G N + TN+EA + IAR L+LR++GG ++IDFI+M ++ H V Sbjct: 901 AVDINSGKISGKGNFEAMAHKTNMEAAETIARHLKLRDIGGQVVIDFIEMRDKKHIIEVE 960 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 +L A+ DR + V SA GL+E+ R+RT S + CP C G G + +E Sbjct: 961 KTLRSAMKNDRARHDVGRMSAFGLLELVRQRTGSSALAITMEPCPACGGTGQRRNLEWQA 1020 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 + +RE+ R+ A ++ + S +A L + SL E+E GK +++ + P Sbjct: 1021 LQALRELRRMLRAESKEKCVYGTSAELALYLLNHKRDSLREMEQDYGKCLEISVRP 1076 >UniRef50_A4A8E4 Ribonuclease E n=5 Tax=unclassified Gammaproteobacteria RepID=A4A8E4_9GAMM Length = 1003 Score = 268 bits (685), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 153/419 (36%), Positives = 244/419 (58%), Gaps = 14/419 (3%) Query: 4 ELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++L+N T E RVA +DG L ++ IE R NIY G+++RV P ++AAFVD G Sbjct: 3 KMLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDFGA 62 Query: 63 DKAAFLHASDIMP-----HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGA 117 ++ FL +I + + V G +F++RD+ V++G L+VQV K+ G KGA Sbjct: 63 ERHGFLSVKEIAREYFYRNPKDVDG----KFSIRDV---VKEGTRLIVQVDKEERGNKGA 115 Query: 118 RLTTDITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEG 176 LTT I+LP RY+V MP G +S+RIE + E + + A + G IIRTA G Sbjct: 116 ALTTFISLPGRYMVLMPNNPRAGGISRRIEGDDRAELREALSALDIPDGMGVIIRTAGVG 175 Query: 177 VGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSR 236 EL D YL ++W V + + ++ LY E + R +RD+ ++D++ +DS Sbjct: 176 RSAEELQWDLNYLLQLWEAVSKAGEENRSPVLLYQESNVIIRAVRDYLRDDVDQVLIDSP 235 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 ++ ++F S +P+ +++ Y P+F+ F +E++I+ A +R+V L SGG ++ID Sbjct: 236 DAFKQAMDFVSMVMPKYQQRIKLYEDNIPLFNRFQIESQIETAFQREVRLPSGGSIVIDP 295 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+ ++DIN+ N++ T TN+EA +ARQLRLR++GG+I+IDFIDM + Sbjct: 296 TEALVSIDINSARATKGANIEATALQTNLEAADEVARQLRLRDMGGLIVIDFIDMLAAKN 355 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 +R V + + AL+ DR + V S GL+EM+R+R R S+ CP C G+G+++ Sbjct: 356 QRAVENRMRDALAIDRARVQVGRISRFGLLEMSRQRLRPSLGETSAIICPRCTGQGSIR 414 >UniRef50_Q0F3G3 Ribonucleases G and E n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G3_9PROT Length = 727 Score = 268 bits (684), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 157/477 (32%), Positives = 262/477 (54%), Gaps = 7/477 (1%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N + E+RVA + G L E+ IE + NIYKG+V++V +QAAFV+ G Sbjct: 1 MLINASHDEESRVAIAEDGYLHELDIESAQKTLTKSNIYKGKVTKVEASLQAAFVEYGAA 60 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDIS--ELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL S+I H + K R+IS +++ Q+L+VQVVK+ G KGA LTT Sbjct: 61 RQGFLSLSEI--HPDYWKDGVDKSTNPRNISIQDVLAPKQELLVQVVKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEA 180 I+L RYLV P + G+S+++ S+ ER +K+++++ E G IIRTA + Sbjct: 119 QISLAGRYLVLSPNTTRGGISRKL-SDEERRSMKEILSQLDVPENMGLIIRTAGKDQTLE 177 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L D YL+R+W ++ + + +Y E LA R +RD ++D I VD+ Y Sbjct: 178 ALQRDYQYLRRLWDEIRIKSETTPPPALIYLEGDLATRAIRDHFSDDVDEIWVDNHEIYT 237 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 F +P ++ Y G+ P+F + +E++ + ER++ L++GG +++D TEA+ Sbjct: 238 HTKAFVHAVLPGKEKLVKLYRGKIPLFRKYGIESQCEEMHEREIRLRTGGSIVLDPTEAL 297 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T++D+N+ +++DDT N+EA + IARQLR+R++GG+I+IDFIDM + H ++V Sbjct: 298 TSIDVNSARATKGKHIDDTALAINLEAAEEIARQLRIRDIGGLIVIDFIDMASRKHGQQV 357 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L +A D+ + S GL+EM+R+R S+ CP C GRG ++TV+++ Sbjct: 358 EDMLRKACKGDKARIQFARISRFGLLEMSRQRLHPSVRESTTEPCPRCQGRGFIRTVDSM 417 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 +++ + A +V E L + ++A +E Q+ +QI P Sbjct: 418 ALQMLTRMEDWAEAGKKPTLVVQVPSDTGEYLMNNKRDNIARIEETYEIQITLQIRP 474 >UniRef50_A5WCP3 RNAse E n=3 Tax=Proteobacteria RepID=A5WCP3_PSYWF Length = 1368 Score = 266 bits (681), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 150/426 (35%), Positives = 242/426 (56%), Gaps = 8/426 (1%) Query: 5 LLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T +E RVA G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 4 ILINATHNEEVRVALCKGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYGSK 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I +E ++G +++ +I +L+++G +L+VQV K+ G KGA L+T + Sbjct: 64 RQGFLPVREIA--SEYLSGNPREE----NIRKLIKEGDELIVQVEKEERGNKGAALSTYV 117 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAEL 182 +L RYLV MP G R S RE +K+++ +G I+RTA G + +L Sbjct: 118 SLAGRYLVLMPNNPKGGGISRQISGKLREDMKRMLGNLDLPKGMSVIVRTAGIGKTQEDL 177 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D +L +W + ++ K+ + ++ E + R +RD+ ++ I +D+ + Sbjct: 178 QHDLNHLLNIWNAIQDQNKKYASPRLVHQEAGVVTRAVRDYLRDDITEIWIDNEEAFIEA 237 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 F +P KL YT +P+F F+VE +I+ A +R+V L SGG ++IDQTEA+ + Sbjct: 238 ETFIKAVMPTQIDKLRKYTDFEPMFSSFNVERQIETAYQREVRLPSGGSIVIDQTEALVS 297 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +DIN+ ++ +T ++TN+EA IARQLRLR++GG+I+IDFIDMN+ H++ V Sbjct: 298 IDINSAKSTKGADVAETAYHTNLEAADEIARQLRLRDMGGLIVIDFIDMNDSKHQKEVEK 357 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L +A DR + S GL+EM+R+R R S+E CP CHG G ++ + ++ Sbjct: 358 RLVEATKYDRARVQFGEISRFGLMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLSL 417 Query: 423 EIMREI 428 IMR+I Sbjct: 418 SIMRQI 423 >UniRef50_P21513 Ribonuclease E n=119 Tax=Gammaproteobacteria RepID=RNE_ECOLI Length = 1061 Score = 266 bits (681), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 156/436 (35%), Positives = 249/436 (57%), Gaps = 24/436 (5%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G + Sbjct: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 Query: 64 KAAFLHASDI----MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 + FL +I P G +I +++R+GQ+++VQ+ K+ G KGA L Sbjct: 64 RHGFLPLKEIAREYFPANYSAHGRP-------NIKDVLREGQEVIVQIDKEERGNKGAAL 116 Query: 120 TTDITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGV 177 TT I+L YLV MP G +S+RIE + +R LK+ +A +G G I+RTA G Sbjct: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGK 175 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 L D ++ + W + + + + ++ E + R RD+ ++ I +D+ Sbjct: 176 SAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN-- 233 Query: 238 TYEALLEFTSEYI-----PEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYL 292 +LE ++I P+ +SK++ YTG P+F + +E++I+ A +R+V L SGG + Sbjct: 234 --PKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSI 291 Query: 293 IIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMN 352 +ID TEA+T +DIN+ ++++T FNTN+EA IARQLRLR+LGG+I+IDFIDM Sbjct: 292 VIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMT 351 Query: 353 NEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 H+R V + L +A+ +DR + ++ S GL+EM+R+R S+ + CP C G G Sbjct: 352 PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 Query: 413 TVKTVETVCYEIMREI 428 TV+ E++ I+R I Sbjct: 412 TVRDNESLSLSILRLI 427 >UniRef50_A9VIS0 Ribonuclease, Rne/Rng family n=78 Tax=Bacillus RepID=A9VIS0_BACWK Length = 469 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 159/462 (34%), Positives = 258/462 (55%), Gaps = 28/462 (6%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 L +N T SE RVA + + E+ +R + IVG+IY GR+ R + GM AAFV+IGL+K Sbjct: 11 LYINYTGSEKRVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGLEK 70 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 A+L D+ P S + +GQ ++VQVVK+ + TKG +LT I Sbjct: 71 HAYLSFDDV-PS-----------------SYRIHEGQAILVQVVKEAIDTKGPKLTAKIE 112 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 +Y+V+MP VS++I++ R++L + E GG+I R+A+E E+ + Sbjct: 113 FTGKYVVYMPYDEMRAVSRKIKNNKRRQQLLGIEVEGT---GGYIFRSASEKGTIDEIQA 169 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 + L++++ ++ ++ + + L+ RV ++ +++I VD+R + L E Sbjct: 170 EMQGLQQLYEELKRKEDQGKAPLLLHQPATFLDRVFQENPIETIEKIVVDTRSIVKELEE 229 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 + ++ Y + +F+ F ++ EI++AL++ V L +G YLI++Q E MT +D Sbjct: 230 KVGK------ERVAFYNEKSSMFNHFGIDREIEKALQKIVWLPNGAYLIVEQMETMTVID 283 Query: 305 INTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSL 364 +NTG F G +NL DT+F TN A + IARQLRLR++GG+I+IDFI+M + + +V L Sbjct: 284 VNTGKFTGKQNLQDTVFRTNEMAAEEIARQLRLRDIGGMILIDFINMKRREDKEKVRERL 343 Query: 365 EQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEI 424 AL DR T V GF+ LG++EMTRKR + S+ VL EC C G V + ET+ YE+ Sbjct: 344 MIALQDDRTYTRVLGFTELGILEMTRKRKKHSLRDVLLEECAPCKATGYVISNETIAYEL 403 Query: 425 MREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIF 466 RE++ + + + L+ AS V + +E EI+ Sbjct: 404 ERELI-TYGNIEDEAVLIAASKKVQKHFSQKELQKNIPFEIY 444 >UniRef50_Q8K9J9 Ribonuclease E n=5 Tax=Buchnera aphidicola RepID=RNE_BUCAP Length = 968 Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 155/433 (35%), Positives = 250/433 (57%), Gaps = 18/433 (4%) Query: 5 LLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE NIYKG+++R+ P ++A F+D G++ Sbjct: 4 MLINATQQEELRVALVDGQRLYDLDIESSRSEQKKSNIYKGKITRIEPSLEAVFIDYGME 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVR-DISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K FL +I + E VR +I +++R+GQ+L+VQ+ K+ GTKGA LTT Sbjct: 64 KHGFLPLKEISKN----YFPENYNCDVRLNIKDILREGQELIVQINKEERGTKGAALTTF 119 Query: 123 ITLPSRYLVFMPGASHV-GVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEA 180 ITL YLV MP + G+S+R+E S+R LK++++ E+ G IIRTA G Sbjct: 120 ITLAGSYLVLMPNNPKIAGISRRVEG-SDRIELKELLSSLKIPEKMGLIIRTAGVGKSIK 178 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L D + + W + + K+ + +Y E + R RD+ ++ I +D+ Sbjct: 179 SLQWDLSLRLKHWNAIKKASKKKSAPFLIYQESNVIVRAFRDYLRQDIGEILIDN----P 234 Query: 241 ALLEFTSEYI-----PEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIID 295 +L+ E+I P+ +K++ YTG P+F + +E++I A +RKV L SGG +++D Sbjct: 235 KILDIAREHITALGRPDFINKIKLYTGEIPLFSYYQIESQIDSAFQRKVRLPSGGSIMVD 294 Query: 296 QTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 TEA+T +DIN+ +++ T FNTN+EA + I+RQLRLR+LGG+I+IDFIDM Sbjct: 295 TTEALTAIDINSSRSTRGADIETTAFNTNLEAVEEISRQLRLRDLGGLIVIDFIDMTTIS 354 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 H++ + + L + + +DR + + S GL+EM+R+R S+ + CP C G GT++ Sbjct: 355 HQKIIENKLREIVREDRARIQIGHISKFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIR 414 Query: 416 TVETVCYEIMREI 428 E++ I+R I Sbjct: 415 DNESLSLSILRLI 427 >UniRef50_Q2YA54 Ribonuclease E n=7 Tax=Betaproteobacteria RepID=Q2YA54_NITMU Length = 977 Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 159/425 (37%), Positives = 240/425 (56%), Gaps = 8/425 (1%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L N T P E RVA +DG L ++ IE + NIYK ++R+ P ++AAFV+ G + Sbjct: 4 MLFNATQPEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEYGGE 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I + E VR + + + +GQ+L+VQV KD GTKGA LTT I Sbjct: 64 RHGFLPFKEI---SRSYLKESPDPGRVR-VQDALHEGQELIVQVDKDERGTKGAALTTYI 119 Query: 124 TLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQGGFII-RTAAEGVGEAE 181 +L RYLV MP G VS+RIE E +R L+ V++ QG II RTA G E E Sbjct: 120 SLAGRYLVLMPNNPRGGGVSRRIEGE-DRAELRDVMSHLNIPQGMSIIARTAGIGRTEEE 178 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D YL ++W + + K + +Y E +L R +RD+ + E+ I +D+ YE Sbjct: 179 LQWDLNYLLQLWRAIEDASKGQSGAFLIYQESSLVIRAIRDYFNQEIGEILIDTESIYEQ 238 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 +F +P ++++ Y P+F F +E++I+ A R+V L SGG ++ID TEA+ Sbjct: 239 ACQFMGHVMPGNVARVKLYRDDVPLFSRFQIEHQIETAYSRQVTLPSGGAIVIDHTEALV 298 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +VD+N+ +++ T TN+EA IARQLRLR+LGG+++IDFIDM ++R V Sbjct: 299 SVDVNSARATRGSDIEQTALATNLEAADEIARQLRLRDLGGLVVIDFIDMEVSRNQREVE 358 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 + L AL DR + + S GL+E++R+R R S+ CP CHG G ++ ++ Sbjct: 359 NRLHDALRYDRARVQMGKISRFGLLELSRQRLRPSLGESSYISCPRCHGTGHIRGTDSSA 418 Query: 422 YEIMR 426 I+R Sbjct: 419 LHILR 423 >UniRef50_C4X6M8 RNase E n=25 Tax=Gammaproteobacteria RepID=C4X6M8_KLEPN Length = 1077 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 156/436 (35%), Positives = 248/436 (56%), Gaps = 24/436 (5%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G + Sbjct: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 Query: 64 KAAFLHASDI----MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 + FL +I P G +I +++R+GQ+++VQ+ K+ G KGA L Sbjct: 64 RHGFLPLKEIAREYFPANYNAHGRP-------NIKDVLREGQEVIVQIDKEERGNKGAAL 116 Query: 120 TTDITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGV 177 TT I+L YLV MP G +S+RIE + +R LK+ +A G G I+RTA G Sbjct: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPDGMGLIVRTAGVGK 175 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 L D ++ + W + + + + ++ E + R RD+ ++ I +D+ Sbjct: 176 SAEALQWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN-- 233 Query: 238 TYEALLEFTSEYI-----PEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYL 292 +LE ++I P+ +SK++ YTG P+F + +E++I+ A +R+V L SGG + Sbjct: 234 --PKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSI 291 Query: 293 IIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMN 352 +ID TEA+T +DIN+ ++++T FNTN+EA IARQLRLR+LGG+I+IDFIDM Sbjct: 292 VIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMT 351 Query: 353 NEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 H+R V + L +A+ +DR + ++ S GL+EM+R+R S+ + CP C G G Sbjct: 352 PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 Query: 413 TVKTVETVCYEIMREI 428 TV+ E++ I+R I Sbjct: 412 TVRDNESLSLSILRLI 427 >UniRef50_C8N8A8 Ribonuclease G and E n=19 Tax=Proteobacteria RepID=C8N8A8_9GAMM Length = 1302 Score = 265 bits (677), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 149/429 (34%), Positives = 247/429 (57%), Gaps = 10/429 (2%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G Sbjct: 1 MLINATQQEELRVALVDGQQLYDLDIETLYSAQKKANIYKGKITRIEPSLEAAFVDYGAQ 60 Query: 64 KAAFLHASDIMPHTECVAGE---EQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 + FL +I E + G + Q +D+ E+ GQ+++VQ+ K+ G KGA LT Sbjct: 61 RHGFLPFKEI--GKEYLTGSTTAHEGQLAFKDMIEV---GQEVLVQIDKEERGNKGAALT 115 Query: 121 TDITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T I+L R+LV MP G VS+RI+ + +E + + E G I+RTA G + Sbjct: 116 TYISLAGRFLVLMPNNPRAGGVSRRIQGDDRKELRETLDMLDVPENMGIIVRTAGVGRAQ 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D +L ++W + E ++ Q + +Y E + R LRD+ ++ +I +D Y Sbjct: 176 EELQWDLDFLLQLWEAISEEYRKAQPQRLIYQESNIIVRALRDYLRPDIGQILIDDERVY 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + +F + +P +KL+ Y P+F + +E +I+ A +R V+L SGG L+ID TEA Sbjct: 236 QQASDFMTLVMPNNLNKLKLYQDNIPLFTRYQIEGQIESAYQRNVQLPSGGELVIDYTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T + TN+EA IARQ+RLR+LGG+I+IDFIDM+ +R+ Sbjct: 296 LVSIDINSSKATKGGDIEETAYQTNLEAADEIARQMRLRDLGGLIVIDFIDMSVSRNRKD 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L +A DR + + S GL+E++R+R R S++ CP C G+G+++ +++ Sbjct: 356 VENRLYEATKIDRARVQIGRISRFGLLELSRQRLRPSMDESSHRVCPRCKGQGSIRGIQS 415 Query: 420 VCYEIMREI 428 + ++R I Sbjct: 416 MALSLLRLI 424 >UniRef50_B6YQX9 Ribonuclease G n=23 Tax=Bacteroidales RepID=B6YQX9_AZOPC Length = 518 Score = 264 bits (674), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 145/437 (33%), Positives = 249/437 (56%), Gaps = 22/437 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +EL+++V P +A ++ L E E VGNIY GRV +++PG+ AAFVDI Sbjct: 1 MISELVIDVQPQIISIAVLEDKNLVEFRKEVRDLSFSVGNIYLGRVKKMMPGLNAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFT-----------------VRDIS--ELVRQGQ 101 G +K AFLH D+ + + +K F+ +DIS ++++QG Sbjct: 61 GGEKGAFLHYRDLGGNINSLNTFLKKVFSEKRIPPIGKFLCSSAEVAKDISITDILKQGD 120 Query: 102 DLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY 161 +++VQ+VK+P+ TKG RLT+++++ R L+ +P V +S +I+S+ ER RLK++V Sbjct: 121 NVLVQIVKEPIATKGPRLTSELSIVGRCLIVIPFGDRVSISLKIQSDKERIRLKQLVCSI 180 Query: 162 CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 221 + I+RT+A+G +EL + L + W + + ++ +Y E +LR Sbjct: 181 KPKNFSVIVRTSAKGKQASELDKELKILVKRWNDNIVKLINSKSPSLIYEETGRVLALLR 240 Query: 222 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 281 D D+ + I ++ + + ++ S P+ ++ ++ Y G PIFD F + +++ Sbjct: 241 DNFDSSFEHIYINDENMFNEVRDYLSLIDPQKSNIVKLYKGEFPIFDNFVITKQLKSKFG 300 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTG---AFVGHRNLDDTIFNTNIEATQAIARQLRLR 338 + + LK+G YL+I+ TEAM +D+N+G A + N +D I + N+ A + IA+QLRLR Sbjct: 301 KIITLKNGAYLVIEHTEAMYVIDVNSGNRLALTANTNQEDVIVDVNMSAAEEIAKQLRLR 360 Query: 339 NLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIE 398 ++GGII+IDFIDM + +R+++ S+ ++KDR K V S +GL+E+TRKR R +++ Sbjct: 361 DMGGIIVIDFIDMYEQVNRQKLYDSMCNFMAKDRAKHHVFPLSKVGLMEITRKRIRPALD 420 Query: 399 HVLCNECPTCHGRGTVK 415 C G+GT+K Sbjct: 421 FNAMETCSVPLGKGTIK 437 >UniRef50_A8UTH4 Cytoplasmic axial filament protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UTH4_9AQUI Length = 466 Score = 263 bits (673), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 148/428 (34%), Positives = 248/428 (57%), Gaps = 20/428 (4%) Query: 24 LQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGE 83 + EI +E+ ++ + G+I+KGRV R + AFVDIG+ K A+L + E A E Sbjct: 24 ISEIKVEKRGKKRLSGSIFKGRVKRFAKSLDGAFVDIGIGKEAYLP----LKAYENTALE 79 Query: 84 EQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQ 143 E + L +G +++VQ+ ++P+ KGA++T I++P ++LV++P + V VS Sbjct: 80 EDES------CPLPEEGSEILVQMKREPIEDKGAKVTCRISIPGKFLVYLPTSKKVFVSS 133 Query: 144 RIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRP 203 +IE E+ R K++ DE+G I+RT+AE E EL ++ L+ W ++ ER Sbjct: 134 KIEDENRRAFFKELFERALDEEG-VIVRTSAEFATEEELLAELQKLRNTWKEIKERSASI 192 Query: 204 QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGR 263 + +Y E+ +++RD+ + ++ I VD R + LL Y PE+ K+ + Sbjct: 193 KQGL-VYEEVPAYVQLVRDYWN-DVSEIIVDDRELWSELLAELESYFPELVGKVRYVKNI 250 Query: 264 QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNT 323 F + ++ + R R V L++GGY+II++TEAMT +D+N+G+ G L+D T Sbjct: 251 SVFFKKYGLDKALTRLFARYVWLRNGGYIIIEETEAMTVIDVNSGSGCGD-TLEDNALQT 309 Query: 324 NIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSAL 383 N+EA + I RQ++LR++GGI+IIDFIDM N+ +R +++ +++ + + K V G + L Sbjct: 310 NLEAAEEIVRQIKLRDIGGIVIIDFIDMKNKKNREKLVKRVKELFADEGSKVHVYGITHL 369 Query: 384 GLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFL-V 442 GL+E+TRK+ S+ +L CP C G+G +K+ E V YEI +EI Y R+L V Sbjct: 370 GLLELTRKKETPSVTRLLSINCPYCKGKGYIKSPEVVLYEIEKEI-----NYFKGRYLEV 424 Query: 443 YASPAVAE 450 +PA+ E Sbjct: 425 RVNPALKE 432 >UniRef50_Q31PW1 Ribonuclease, Rne/Rng family n=19 Tax=Cyanobacteria RepID=Q31PW1_SYNE7 Length = 808 Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 152/381 (39%), Positives = 223/381 (58%), Gaps = 12/381 (3%) Query: 38 VGNIYKGRVSRVLPGMQAAFVDIG-LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISEL 96 +G+IY G V VLPG+ AAFV+IG +K F+H +D+ P + + + I+EL Sbjct: 88 IGDIYLGVVENVLPGIDAAFVNIGDSEKNGFIHVTDLGPL--------RLRRSAGAITEL 139 Query: 97 VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKK 156 + Q ++VQV+K+P +KG RLT +I+LP RYLV MP +S V +S+RI SESER RL+ Sbjct: 140 LAPQQKVLVQVMKEPTSSKGPRLTGNISLPGRYLVLMPYSSGVSLSRRIMSESERNRLRA 199 Query: 157 VVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALA 216 + G ++RT A+G+ E + D L+R W + ++ L + Sbjct: 200 LSVLIKPAGMGLLVRTEADGIAEELIIEDLESLQRQWEQTLQLADSTPAPALLTRDDDFI 259 Query: 217 QRVLRDFADAELDRIRVDSRLTYEALLEFTSEY-IPEMTSKL--EHYTGRQPIFDLFDVE 273 QRVLRD D ++RI VDS + + + S + E+ L E Y R I D F V Sbjct: 260 QRVLRDMYDEGVNRIVVDSHTGLKRVKQHLSAWGAGEIAPGLLIEQYRDRSSILDYFRVN 319 Query: 274 NEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIAR 333 I+ AL+ +V+L SGGY+II++TEA+T VD+N+G+F +T+ TN EA IAR Sbjct: 320 AAIREALKPRVDLPSGGYVIIEKTEALTVVDVNSGSFTRSATARETVLWTNCEAAAEIAR 379 Query: 334 QLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRT 393 QLRLRN+ G+II+DFIDM++ + +VL +AL D+ + ++ S LGLVE+TRKR Sbjct: 380 QLRLRNIAGVIIVDFIDMDSRRDQLQVLEHFTRALRHDKSRPQISQLSELGLVELTRKRQ 439 Query: 394 RESIEHVLCNECPTCHGRGTV 414 ++I + C TC G G V Sbjct: 440 GQNIYELFSTPCTTCGGLGHV 460 >UniRef50_Q2B6H0 Cytosolic axial filament protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B6H0_9BACI Length = 492 Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 161/462 (34%), Positives = 260/462 (56%), Gaps = 26/462 (5%) Query: 4 ELLVNVTPSETRVAYID-GGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +L++N E R A ++ G +++ I++ VG+IY G V++VLPGM AAFV+IG Sbjct: 3 KLVINYATREKRYAVLNESGKPEKLIIDQPKNLSAVGSIYLGTVAKVLPGMNAAFVEIGE 62 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K+ FLH + + + E++++ + IS VR+G+ L+VQV KD GTKG RLT Sbjct: 63 EKSGFLHRDRLASYVR--SAEDKEKKDKKSISSFVREGEKLLVQVEKDAAGTKGPRLTNV 120 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I L++MP +V VS++IE +S RE L+ + + +E+ G I RT+A G E + Sbjct: 121 IEFQGEKLIYMPFGRYVAVSRKIEKDSAREELRTLGMKLKEEEEGLIFRTSAAGASEEDF 180 Query: 183 ASDAAYLK---RVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDR-----IRVD 234 + L+ R K K+P +LA + L + A AE+ R + VD Sbjct: 181 QKELEELRAEHRELAKKAASVKKP-------AKLAEKETFLEE-AAAEMARLGAGEVVVD 232 Query: 235 SRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLII 294 + L + +E + + +Y ++ IF ++++ EI RAL++ V L +G YLI Sbjct: 233 DLAVKQKLEKAAAESV------VRYYNNKESIFSAYNLDQEIDRALKKIVWLDNGAYLIF 286 Query: 295 DQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 D+ EA+T +D+NTG + G NL DT+ TN A ARQ+RLR++GG+I+IDFIDM E Sbjct: 287 DEAEALTVIDVNTGKYSGRENLRDTVLRTNEWAAAEAARQIRLRDIGGMILIDFIDMKEE 346 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 R+ + +E+ L KD +T + GF+ LG++++TRK+TR ++ L +C C G G + Sbjct: 347 RDRQHISRVMEKELRKDERRTRIVGFTPLGILQITRKKTRAALSESLTVKCTACEGTGRM 406 Query: 415 KTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEE 456 + ET + + REI + + D + L+ S V + GE+ Sbjct: 407 VSAETAAFRLEREIWEMRGS-DYEAALIRLSADVLDVFSGEQ 447 >UniRef50_B8DIL9 Ribonuclease, Rne/Rng family n=3 Tax=Desulfovibrio RepID=B8DIL9_DESVM Length = 491 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 155/482 (32%), Positives = 259/482 (53%), Gaps = 11/482 (2%) Query: 5 LLVNVTPSE-TRVAYIDGGI----LQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 + ++V P E VA + G ++E ++E + GNIY+G ++ V +QAAFV+ Sbjct: 10 MFISVLPGEQVEVALAEEGAKENQVKEYYVEMVHQAKTKGNIYRGIINNVDTNLQAAFVN 69 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G DK FL ++ P + K + ++++ GQ+++VQVVK+P G+KGA L Sbjct: 70 YGADKNGFLQIDEVHPEYYNTPHDATKGKKYPLMQKVLKAGQEVLVQVVKEPTGSKGAFL 129 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVG 178 TT +++P R+LV PG +GVS+++E + ER RL++++ G G I+RT + G Sbjct: 130 TTYLSMPGRFLVLTPGREQIGVSRKVEDDEERGRLREMLEGLNPGPGLGVIVRTVSAGTS 189 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + L D +LKR+W + ++ +Y E LA R +RD+ ++ + VD T Sbjct: 190 KTTLQRDLQFLKRLWKDIRKKGTEESAPCLIYKEPDLASRAVRDYLSDDVAEVWVDDEHT 249 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGR-QPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 + E++S P S ++ Y + + +++ F ++ ++++ R+V L SGG L+ DQT Sbjct: 250 ATLIEEYSSLLFPRKGSLVKVYKDQTRTLWERFGIQRQLEQIYSREVTLPSGGRLVFDQT 309 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+ +DIN+G G N + TN+EA + IA+QL+LR++GG ++IDFI+M + +H Sbjct: 310 EALMAIDINSGKISGKTNFESMALRTNMEAAETIAQQLKLRDIGGQVVIDFIEMRDRNHW 369 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V L A+ DR + V S GL+++ R+RT S + CP C G G + + Sbjct: 370 REVEKILRNAMKNDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCKGSGLRRNM 429 Query: 418 ETVCYEIMREIVRVHHA--YDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQI 475 E + +REI R A + + FL VA L + L ++E G V + I Sbjct: 430 EWQSLQALREIHRQLRALPHGTVTFLFETGAEVAMHLLNHKRERLLDLERQFG--VHLDI 487 Query: 476 EP 477 P Sbjct: 488 RP 489 >UniRef50_C9XNN6 Ribonuclease g n=8 Tax=Clostridium RepID=C9XNN6_CLODC Length = 473 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 155/416 (37%), Positives = 237/416 (56%), Gaps = 24/416 (5%) Query: 24 LQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGE 83 L E+ +E + V NIY+G V +V+PG++A FVDIG K A+L Sbjct: 23 LTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDIGFKKLAYLQLKK----------- 71 Query: 84 EQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQ 143 ++ GQD++VQ+ K+ +GTKGA+L T+I++ RY+V++P +S Sbjct: 72 ----------GSTIKSGQDILVQINKEEIGTKGAKLNTEISISGRYIVYIPSNDRTTISN 121 Query: 144 RIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRP 203 +I E ER RLKK+ E G IIRT A+G E+ D LK + +++ K Sbjct: 122 KITDEKERFRLKKITKAVNKENLGLIIRTEAQGCTHDEIKKDIEELKLKYENILKEYKLG 181 Query: 204 QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGR 263 LY L A + ++D + +++ I +S Y L KL R Sbjct: 182 IGPKLLYKSLDFATKYVKDNVNDDIESIITNSYDKYSELKSILRGIDKTYVDKLCLEENR 241 Query: 264 QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNT 323 +FDL+ +E++I++ L +KV LKSGGYLII++TEA+T +D+NTG F+G LD+T++ T Sbjct: 242 -DVFDLYRIESKIEKLLNKKVWLKSGGYLIIEKTEALTVIDVNTGKFIGTGKLDETVYKT 300 Query: 324 NIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSAL 383 N+EA + I RQL +R++ GIIIIDFIDM+ + H++ +LH LE+ +KD+ K V G + L Sbjct: 301 NLEAAKEIVRQLIIRDIAGIIIIDFIDMHKKKHQKEILHILEEEFNKDKRKAEVLGMTKL 360 Query: 384 GLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV--HHAYDS 437 GLVE+ R+R +ESI+ CP C G T+K+V + I +EI+R+ H Y + Sbjct: 361 GLVEVARRREKESIDKYYLMSCPCCDGEQTIKSVHYILDSIEKEIMRISEHTVYKN 416 >UniRef50_Q2RSE6 RNAse E n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RSE6_RHORT Length = 889 Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 156/471 (33%), Positives = 246/471 (52%), Gaps = 45/471 (9%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT +L++ P ETRV +DG L E +E ++ + GNIY +V RV P +QAAFV+ Sbjct: 1 MTKRMLIDANHPEETRVVVLDGTRLDEFDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMP------------------------------HTECVAGEEQKQFT 89 G ++ FL ++I P E + G+E + Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREKLIAEEALEAAADDDDEADSVETLGGDEAEDSA 120 Query: 90 VR-----------DISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASH 138 I E++++ Q ++VQVVK+ G KGA LTT ++L RY VFMP + Sbjct: 121 PAPRAKSRVSRSYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVFMPNTTR 180 Query: 139 VG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKV 196 G VS++I S ++R+RLK ++ E +G I+RTA AE+ D YL R W + Sbjct: 181 GGGVSRKITSATDRKRLKSIMGELIGPKGSAVILRTAGSERSRAEIRRDHDYLLRTWDSI 240 Query: 197 MERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSK 256 + + ++ E +L +R +RD +++ I V+ Y +F P K Sbjct: 241 RQTTLASRAPCLIHEEGSLIKRAIRDIYSRDIEEILVEGDAGYRTAKDFMKMLTPSHAKK 300 Query: 257 LEHYTGR-QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y P+F + VE+++ +L+SGGYL+I+QTEA+ +D+N+G RN Sbjct: 301 VQPYKDEIMPLFHRYQVESQMDAMHSPIAQLRSGGYLVINQTEALVAIDVNSGRSTRERN 360 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 +++T + TN+EA IARQLRLR+L G+I+IDFIDM++ V ++ AL DR + Sbjct: 361 IEETAYKTNLEAADEIARQLRLRDLSGLIVIDFIDMDDPRSNANVERRVKDALRNDRARI 420 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMR 426 + S GL+EM+R+R R S+ CP CHG G++++VE+ I+R Sbjct: 421 QLGRISHFGLLEMSRQRLRPSLMETSFQPCPHCHGSGSLRSVESTAIHILR 471 >UniRef50_C7RBE6 Ribonuclease, Rne/Rng family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBE6_KANKD Length = 951 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 153/429 (35%), Positives = 244/429 (56%), Gaps = 15/429 (3%) Query: 5 LLVNVTP--SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +L+N T E RVA +DG L ++ IE R GNIYKG+V+R+ P ++AAFVD G Sbjct: 4 MLINATNHHEELRVALVDGQRLYDLDIELAGREQKKGNIYKGKVTRIEPSLEAAFVDYGA 63 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRD---ISELVRQGQDLMVQVVKDPLGTKGARL 119 ++ FL + VA E + R I E +++GQ+++VQ+ K+ G KGA L Sbjct: 64 ERHGFLPLKE-------VAREYMQNAPSRGRPTIKEALKEGQEIIVQIDKEERGNKGAAL 116 Query: 120 TTDITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGV 177 TT I+L YLV MP G +S+RIE + ER LK+V+++ G G I+RTA G Sbjct: 117 TTSISLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKQVMSQLPVPNGMGCIVRTAGIGK 175 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 E+ D YL W + + + + E + R +RD+ ++ I +D Sbjct: 176 SLEEIQYDFNYLIDTWNGIKQVAGTRPAPFLITQESDVITRAIRDYLRPDIGEIIIDRPE 235 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 YE + P+ SK++ Y P+F+ + VE++I+ A +R+V L SGG ++ DQT Sbjct: 236 IYERVKSELQYQRPDFVSKVKLYRDEIPLFNRYQVESQIESAFQREVRLPSGGSVVFDQT 295 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+ ++DIN+ ++++T +TN+EA + IARQLRLR++GG+I+IDFIDM ++ Sbjct: 296 EALLSIDINSARATKGGDIEETALHTNVEAAEEIARQLRLRDIGGLIVIDFIDMGPPRNQ 355 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V L+ ++++DR + + S GL+EM+R+R R S+E + CP C G G ++ Sbjct: 356 REVERVLKDSVARDRARIQIGRISRFGLLEMSRQRLRPSLEESSQHVCPRCTGSGVIRGT 415 Query: 418 ETVCYEIMR 426 +++ I+R Sbjct: 416 DSLALSILR 424 >UniRef50_C5BU48 Ribonuclease E n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BU48_TERTT Length = 1070 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 253/468 (54%), Gaps = 16/468 (3%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T P E RVA +DG L ++ IE + NIYKG+++R+ P ++AAFV+ Sbjct: 4 MLINATQPEELRVALVDGQWLYDLDIENRLKEQRKANIYKGKITRIEPSLEAAFVEYDKG 63 Query: 64 KAAFLHASDI-----MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 + FL +I + + G +R I ++V++G +++VQV K+ G KGA Sbjct: 64 RNGFLPLKEISREYFLKQPNEIDGR------IR-IKDVVKEGMEVIVQVDKEERGNKGAA 116 Query: 119 LTTDITLPSRYLVFMPGASHV-GVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEG 176 LTT I+L RYLV MP G+S+RI+ + +R LK +++ G G I+RTA G Sbjct: 117 LTTFISLAGRYLVLMPNNPRAGGISRRIDGD-DRSELKDALSQIEIPNGMGIIVRTAGVG 175 Query: 177 VGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSR 236 EL D YL +W + E + L+ E + R +RD+ ++ + VD Sbjct: 176 RSAEELQWDMNYLTTLWNNIQEAANQSTAPAFLFQESNVIIRAIRDYLRPDIGEVIVDDI 235 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 Y +F +P SK++ Y P+F+ + +E +I+ A ER+V+L SGG ++ID Sbjct: 236 AAYNQAADFVQMVMPNYRSKVKLYEKSVPLFNHYQIEGQIETAFEREVKLPSGGSIVIDV 295 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+ ++DIN+ ++++T TN+EA IARQLRLR++GG+++IDFIDM + Sbjct: 296 TEALVSIDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRN 355 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 +R V + + AL DR + V S GL+EM+R+R R S+ CP C G+GT++ Sbjct: 356 QRAVENRVRDALKMDRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTIRG 415 Query: 417 VETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVE 464 +++ I+R + S VA L E+ S++++E Sbjct: 416 TKSIALSILRLVEEEAQKERSAEIRAVVPVPVATYLLNEKRKSISDIE 463 >UniRef50_B3T2A0 Putative S1 RNA-binding domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A0_9ZZZZ Length = 776 Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 148/427 (34%), Positives = 237/427 (55%), Gaps = 11/427 (2%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE ++R NIYK ++SR+ P + A FVD G Sbjct: 25 MLINATQEEELRVAMVDGQKLYDLDIEIKSREQKKNNIYKAKISRIEPSLDAIFVDFGSA 84 Query: 64 KAAFLHASDIMPH---TECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 + FL ++ +E + GE+ DI +L+ +GQD++VQV K+ GTKGA LT Sbjct: 85 RNGFLPFREVSREYYLSEPIPGEKL------DIKKLLEEGQDIVVQVSKEERGTKGAALT 138 Query: 121 TDITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T I+L R++V MP + G VS++I + + L + ++ G IIRTA G + Sbjct: 139 TFISLAGRFIVLMPNKAKAGGVSRKIMGQDREQILDSLSNLGVPKEAGLIIRTAGLGRSD 198 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D +L +W + + + ++ E L R +RD + E+ I VD T+ Sbjct: 199 IELEWDLKHLLGIWNSIKKMAVNVEAPALIFKEDNLIVRAMRDHLNDEISEIIVDDENTF 258 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + ++ + P KL +Y P+F F +E++I+ A KV L SGG ++ID TEA Sbjct: 259 KDAKKYLKQVTPNNLKKLLYYKETTPLFTKFQIEHQIESAYSNKVILPSGGSVVIDYTEA 318 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+G ++ T TN+EA I RQ RLR+LGG+++IDFIDM ++++ Sbjct: 319 LVSIDINSGKSTKQSGIESTALKTNLEAVDEITRQCRLRDLGGLLVIDFIDMRQHRNQKQ 378 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V ++L+ A+ DR K S+ S GL+EM+R+R R S+ C C G G +++ E+ Sbjct: 379 VENALKNAVKSDRAKISLGHISKFGLLEMSRQRLRPSLGDSAYRICENCSGMGRIRSTES 438 Query: 420 VCYEIMR 426 + ++R Sbjct: 439 LALAVLR 445 >UniRef50_C4LJU7 Ribonuclease E n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJU7_CORK4 Length = 1258 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 159/438 (36%), Positives = 243/438 (55%), Gaps = 50/438 (11%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+VA ++ L E + E R +VGNIY GRV VL M+AAFVDIG D+ +++ DI Sbjct: 433 TQVAIMEDDQLVEHFVTSERTRTLVGNIYLGRVQNVLASMEAAFVDIGTDRNGVIYSGDI 492 Query: 74 -MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVF 132 HT + R I + ++ G ++VQV KD +G KG RLT+ I+L RYLV+ Sbjct: 493 DWRHTRHTGRQ-------RKIEKALKPGDPILVQVTKDSVGHKGPRLTSHISLAGRYLVY 545 Query: 133 MPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRV 192 +P GVS+++ E ER+RLKK V+ ++GG IIRTAAEGV ++A D + V Sbjct: 546 VPEGRAHGVSRKL-PEPERKRLKKAVSGILPDEGGAIIRTAAEGVDTEDIARDVRRQQNV 604 Query: 193 WTKVMERKKR---------------------------------PQTRYQLYGELALAQRV 219 W ++E+ PQT L+ E L +V Sbjct: 605 WDTILEKADELRTLPGSQASSGKGSGKKNSKGGKKGSKPHFDGPQT---LHEEPNLLVKV 661 Query: 220 LRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGR----QPIFDLFDVENE 275 +RD + + D + VD ++ + + P++ KL Y + Q F + ++ + Sbjct: 662 VRDLFNEDFDELIVDGGRSWSMVSSYIHRIAPDLEEKLSKYERQDHDGQDAFGHWGIDKQ 721 Query: 276 IQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR-NLDDTIFNTNIEATQAIARQ 334 +++AL+R V L SGG L+I++TEAMT +D+NTG F G +L++T+ N+EA I RQ Sbjct: 722 LKQALDRVVFLPSGGTLVIEKTEAMTVIDVNTGRFTGSSGSLEETVTRNNLEAADEIVRQ 781 Query: 335 LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTR 394 +RLR++GG+I++DFIDM E+++ VL L +AL+KDR + + ++LGLV++TRKR Sbjct: 782 MRLRDIGGMIVVDFIDMVLEENQELVLRRLSEALAKDRTRHQLGEVTSLGLVQITRKRLG 841 Query: 395 ESIEHVLCNECPTCHGRG 412 + + C CHGRG Sbjct: 842 KGLVETFSTPCSECHGRG 859 >UniRef50_Q5WES2 Ribonuclease G n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WES2_BACSK Length = 497 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 143/389 (36%), Positives = 219/389 (56%), Gaps = 7/389 (1%) Query: 26 EIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQ 85 E E R +VG+++ G+V RVLPGM+AAFVDIG K FLH +++ + + Sbjct: 26 EWFFESNDRPQMVGSVFLGKVERVLPGMEAAFVDIGTGKNGFLHRDELLAFHLDPSDLTE 85 Query: 86 KQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRI 145 KQ + IS+ V G + VQV K+ KG RL+ +++P +Y+V+MP ++V VS+RI Sbjct: 86 KQ--TKSISQFVSPGDTIAVQVTKEGTNEKGPRLSGVVSIPGKYVVYMPEGAYVAVSRRI 143 Query: 146 ESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQT 205 ESE R L + G I+RTAA E+ D +L+ +W K + + + Q Sbjct: 144 ESEHVRASLHTALENKLQHNEGAIVRTAAANAPLEEVERDLVFLRTLWQKTL--RHQEQA 201 Query: 206 RYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQP 265 +Y L + +L + + ++ + VD Y + + + K++ Y + Sbjct: 202 PALIYRAATLVETLLLGYLNEQVTEVVVDDIDDYRLMKQLVQ---TDDKDKVKLYAHKGS 258 Query: 266 IFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNI 325 F + ++ +A +R++ LK+G +L+ID+TEAMT +D+NTG F G +T+ N Sbjct: 259 SFQSARISAQLAKAQKRRIWLKNGAFLVIDETEAMTVIDVNTGKFTGKFAQSETVLAVNK 318 Query: 326 EATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGL 385 A A+Q+RLRN GII+IDFIDM ++ R V ++E+AL KDRVKTSV GF+ LGL Sbjct: 319 LAAVEAAKQIRLRNCSGIIVIDFIDMQSDSDRLAVQQTMERALKKDRVKTSVRGFTKLGL 378 Query: 386 VEMTRKRTRESIEHVLCNECPTCHGRGTV 414 +EMTRK+TR S+ + EC C G G V Sbjct: 379 LEMTRKKTRLSMAKTVTVECKACAGTGAV 407 >UniRef50_C1PAJ8 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PAJ8_BACCO Length = 492 Score = 258 bits (658), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 158/488 (32%), Positives = 260/488 (53%), Gaps = 14/488 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +++NV E R A I+ G + I I + VGNIY G+V+ V PG+ AAF+DI Sbjct: 1 MDRSIIINVKTREKRYAVIENGKVSGIRIRQPGDAAKVGNIYLGKVADVKPGINAAFIDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G + +LH S + A + T IS + GQ +MVQV KD G KG LT Sbjct: 61 GGIRHGYLHISRL----PAFANSKNSNPT---ISAYLSPGQTVMVQVKKDETGQKGPLLT 113 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I L +V++P + VS++ + +++R R + V + + Q G I+RTAA G Sbjct: 114 GIIELSGEQIVYLPEGKYTAVSKKAD-DADRNRWRNRVRKALEPQEGIIVRTAAIHAGGD 172 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 + L+ + ++E+ + + L+ + + + R+ + + VD Sbjct: 173 GWRDELKCLRLRYKCLLEKAAQLKAPAVLHEKSTVEAEIFRELVRLKSGTVIVDDAEALA 232 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 L + PE+ E Y+G+Q IF + ++ ++ AL+R V L++G YL+ID+TEA+ Sbjct: 233 RLKALLAGR-PELDWSFELYSGKQNIFTRYRIDRTLEDALKRVVWLENGAYLVIDETEAL 291 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG + G + +T+ TN+ A + I RQL+LR+ GGII++DFIDM ++ R +V Sbjct: 292 TIIDVNTGKYTGTTDQAETVLKTNLLAAKEIGRQLKLRDYGGIILVDFIDMQRDEQRAQV 351 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 LE+ L D +T + GF+ LG+++MTRK+TR+S+ L + CP C G G +++ ET+ Sbjct: 352 RAVLEKELENDEKQTRITGFTELGILQMTRKKTRKSLPEALLSVCPVCGGSGKIESPETL 411 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQI----E 476 + + RE+ +A D + L+ + V + GE L +E +G ++ I Sbjct: 412 AFRLERELWEAPYA-DYEAVLIECTQDVKDCFCGETDVHLKRLENLLGMKLIFHITRDPH 470 Query: 477 PLYNQEQF 484 P Y QF Sbjct: 471 PFYAIRQF 478 >UniRef50_B0BR35 Ribonuclease E n=14 Tax=Pasteurellaceae RepID=B0BR35_ACTPJ Length = 995 Score = 257 bits (656), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 151/431 (35%), Positives = 236/431 (54%), Gaps = 19/431 (4%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE NIYKG+++RV P ++AAFVD G + Sbjct: 4 MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYGAE 63 Query: 64 KAAFLHASDI----MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 + FL +I P G +I +++++GQ+++VQV K+ G KGA L Sbjct: 64 RHGFLPLKEISREYFPADYVFNGRP-------NIKDIIKEGQEVIVQVSKEERGNKGAAL 116 Query: 120 TTDITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYC---DEQGGFIIRTAAE 175 TT I+L YLV MP G +S+RIE + ERL+ A C E G I+RTA Sbjct: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGD---ERLELKEALDCLDVPEDVGLIVRTAGV 173 Query: 176 GVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDS 235 G EL D L W + + + + ++ E + R +RD+ ++ I +D+ Sbjct: 174 GKSPEELQWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDN 233 Query: 236 RLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIID 295 + +E P+ +++ Y G P+F + +E++I+ A +R+V L SGG ++ID Sbjct: 234 KKIFEKAKNHIRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVID 293 Query: 296 QTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 TEA+T +DIN+ ++++T NTN+EA IARQLRLR+LGG+I+IDFIDM Sbjct: 294 VTEALTAIDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVR 353 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 H+R V + + +A +DR + + S GL+EM+R+R S+ + CP C G G V+ Sbjct: 354 HQREVENRIREATRQDRARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVR 413 Query: 416 TVETVCYEIMR 426 E++ I+R Sbjct: 414 DNESIALSILR 424 >UniRef50_A9ADG1 Ribonuclease, Rne/Rng family n=89 Tax=Betaproteobacteria RepID=A9ADG1_BURM1 Length = 1111 Score = 256 bits (653), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 156/429 (36%), Positives = 236/429 (55%), Gaps = 14/429 (3%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L N T E RVA +DG L +I IE R GNIYKG V+R+ P ++A FV+ G D Sbjct: 61 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 120 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRD--ISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL P E + +R I + +R+GQ+L+VQV K+ G KGA LTT Sbjct: 121 RHGFL------PFKEVARQYFKDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTT 174 Query: 122 DITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGE 179 I+L RYLV MP G VS+RIE + ER+ L++ +A+ G I RTA G Sbjct: 175 FISLAGRYLVLMPNNPRGGGVSRRIEGD-ERQELRETMAQLQIPDGMSMIARTAGIGRSA 233 Query: 180 AELASDAAYLKRVWTKV--MERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 EL D YL ++W + + P +Y E +L R +RD+ ++ I +D+ Sbjct: 234 EELQWDLNYLLQLWRAIEAASQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTE 293 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 Y+ F +P+ SK++ Y P+F F +E++I+ A R V L SGG ++ID T Sbjct: 294 IYDQARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHT 353 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+ +D+N+ ++++T TN+EA +ARQLRLR+LGG+I+IDFIDM + + Sbjct: 354 EALVAIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQ 413 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V L+ AL DR + + S GL+E++R+R R ++ CP C+G G ++ Sbjct: 414 REVEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDT 473 Query: 418 ETVCYEIMR 426 E+ +++R Sbjct: 474 ESSALQVLR 482 >UniRef50_Q492Q0 Ribonuclease E n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=Q492Q0_BLOPB Length = 866 Score = 254 bits (648), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 157/466 (33%), Positives = 262/466 (56%), Gaps = 12/466 (2%) Query: 5 LLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE NIYKG++ R+ P ++A FVD G++ Sbjct: 4 MLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDYGVE 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I + +F +I E++ +GQ+L+VQ+ K+ G KGA LTT I Sbjct: 64 RHGFLPIKEISHEYFLSSPSSYNKF---NIKEILCEGQELIVQIDKEERGNKGAALTTFI 120 Query: 124 TLPSRYLVFMPG-ASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAE 181 +L YLV MP G+S+RIE ++R LK++++ +G IIRTA G Sbjct: 121 SLAGSYLVLMPNNPKSSGISRRIEG-NDRIGLKEILSTLELPEGMSLIIRTAGLGKSIEA 179 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDS-RLTYE 240 L D + W + + + ++ + + R RD+ ++ I +D+ ++ + Sbjct: 180 LEWDLTSRLQHWKTIKNTAAKHLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIMHL 239 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 A TS P+ T K++ Y G P+F + +E++I+ A +R+V L SGG ++ID TEA+ Sbjct: 240 AKEHITSLGRPDFTKKIKFYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEAL 299 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +DIN+ +++DT F+TN+EAT IARQLRLR++GG+I+IDFIDM H+R + Sbjct: 300 TAIDINSARSTKGTDIEDTAFHTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQREI 359 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 +SL+ A+ +DR + + S GL+E++R+R S+ + CP C G G+++ E++ Sbjct: 360 ENSLKIAVHQDRARIQIGHISKFGLLELSRQRLSTSLGESSHHICPRCSGTGSIRDNESL 419 Query: 421 CYEIMREIVRVHHAYDSDRFLVYA--SPAVAEALKGEESHSLAEVE 464 I+R I A + + V+A A+A L E+ +++++E Sbjct: 420 SLSILRLIEE--EALKDNTYEVHAIVPVAIASYLLNEKRKAISDIE 463 >UniRef50_Q2JW46 Ribonuclease, Rne/Rng family n=4 Tax=Synechococcus RepID=Q2JW46_SYNJA Length = 711 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 213/379 (56%), Gaps = 12/379 (3%) Query: 38 VGNIYKGRVSRVLPGMQAAFVDIGL-DKAAFLHASDIMPHTECVAGEEQKQFTVRDISEL 96 VG++Y G V VLP + AAFV+IG ++ F+H SD+ P + + ISEL Sbjct: 34 VGDVYVGIVENVLPSIDAAFVNIGSGERNGFIHVSDLGPL--------RLKRNHASISEL 85 Query: 97 VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKK 156 V Q ++VQV+K+P G KG RLT D+ P RYLV P V +S+RIE ER RLK Sbjct: 86 VLPQQKVLVQVMKEPTGNKGPRLTGDLAFPGRYLVLRPYGKGVHLSRRIEDREERNRLKS 145 Query: 157 VVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALA 216 + Q G ++RT AEGV E + D LK++W + ++ + + L + Sbjct: 146 LAILIKPPQMGLLVRTEAEGVSEEAMIEDLEQLKKLWEDIQQQYQAARGPGLLSRDDDFI 205 Query: 217 QRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSK---LEHYTGRQPIFDLFDVE 273 QRVLRD +++RI DS + + + + ++ + PI + F V Sbjct: 206 QRVLRDVYSEDVNRIVTDSPAGAKRVRSYLQGWNKGQMPPGVVVDAHREPTPILEYFRVN 265 Query: 274 NEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIAR 333 I++AL +V+L SGGY++I+ TEA+T +D+N+G+F +T+ TN EA IAR Sbjct: 266 AVIRQALRPRVDLPSGGYIVIEPTEALTVIDVNSGSFTQSATSRETVLWTNCEAATEIAR 325 Query: 334 QLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRT 393 QLRLRN+ G+I++DFIDM++ + VL +ALS D+ + V S LGLVE+TRKR Sbjct: 326 QLRLRNIAGVIVVDFIDMDSRRDQLLVLEHFNKALSSDKARPQVVQLSELGLVELTRKRQ 385 Query: 394 RESIEHVLCNECPTCHGRG 412 +S+ + + CPTC G G Sbjct: 386 GQSLYEIFGHSCPTCEGLG 404 >UniRef50_B0TYI3 Ribonuclease E n=18 Tax=Francisella RepID=B0TYI3_FRAP2 Length = 890 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 164/490 (33%), Positives = 266/490 (54%), Gaps = 27/490 (5%) Query: 4 ELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++L+N SE TR+A +D G L ++ IE R NIYKG +SR+ P + A FV+ G Sbjct: 3 KILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNYGE 62 Query: 63 DKAAFLHASDIMPH--TECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 DK FL ++ + + GE +I+ L+ +GQ+L+VQ+ K+ G KGA LT Sbjct: 63 DKNGFLPFKEVSEYYLKDVPNGE--------NIAHLLSEGQELIVQIDKEERGDKGAALT 114 Query: 121 TDITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 T ITL Y+V +P G +S+R+E E +RE+LKK + + + I RTA Sbjct: 115 TFITLAGSYMVLLPNNPDGGGISRRVEGE-DREKLKKYLKDLNIPKNMSVIARTACVECS 173 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 EL D L +W + + + + L+ E + R +RD ++ I VDS+ Sbjct: 174 FEELKHDFDTLVELWDSIFKAYHKIKKPDLLHKESDIIVRTVRDHLKEDVKEIIVDSKEC 233 Query: 239 YE------ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYL 292 YE LL + + +K++ Y PIF F ++ +I+ A +R++ L SGG + Sbjct: 234 YEDVKRQLGLLRQSFD-----INKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSI 288 Query: 293 IIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMN 352 +ID TEA+ +D+N+ +++ T F TN+EA + +ARQLR+R+LGG++I+DFIDM+ Sbjct: 289 VIDTTEALVAIDVNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMS 348 Query: 353 NEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 +R++V L +AL +D+ + ++ S LGLVE++R+R SI + +CP C G G Sbjct: 349 FYPNRKQVEEKLMEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHG 408 Query: 413 TVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVK 472 +KT + I+R+I D++ V +A + E+ S+ E+E +VK Sbjct: 409 FIKTTQATALTILRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERI--SEVK 466 Query: 473 VQIEPLYNQE 482 V + P +N E Sbjct: 467 VMLIPNFNME 476 >UniRef50_C9R616 Ribonuclease E (RNase E) n=2 Tax=Gammaproteobacteria RepID=C9R616_AGGAD Length = 960 Score = 251 bits (640), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 149/417 (35%), Positives = 232/417 (55%), Gaps = 7/417 (1%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE NIYKG+++RV P ++AAFVD G + Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I Q + +RDI + +GQ+++VQV K+ G KGA LTT + Sbjct: 61 RHGFLPLKEIAREYFPSGYVYQGRPNIRDI---ISEGQEVIVQVNKEERGNKGAALTTFV 117 Query: 124 TLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAE 181 +L YLV MP G +S+RIE + ER LK ++ +G G I+RTA G E Sbjct: 118 SLAGSYLVIMPNNPRAGGISRRIEGD-ERLELKDALSSLDVPEGVGLIVRTAGVGKSPEE 176 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D L W + + + + ++ E + R +RD+ ++ I +DS YE Sbjct: 177 LQWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEK 236 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 P+ ++++ Y G P+F + +E++I+ A +R+V L SGG ++ID TEA+T Sbjct: 237 AKAHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALT 296 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +DIN+ ++++T NTN+EA IARQLRLR+LGG+I+IDFIDM H+R V Sbjct: 297 AIDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE 356 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 + + A+ +DR + ++ S GL+EM+R+R S+ + CP C G G ++ E Sbjct: 357 NRVRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNE 413 >UniRef50_P44443 Ribonuclease E n=98 Tax=Gammaproteobacteria RepID=RNE_HAEIN Length = 935 Score = 250 bits (638), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 152/421 (36%), Positives = 234/421 (55%), Gaps = 15/421 (3%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE NIYKG+++RV P ++AAFVD G + Sbjct: 4 MLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 63 Query: 64 KAAFLHASDI----MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 + FL +I P G + +RDI LV +GQ+++VQV K+ G KGA L Sbjct: 64 RHGFLPLKEIAREYFPDDYVFQG----RPNIRDI--LV-EGQEVIVQVNKEERGNKGAAL 116 Query: 120 TTDITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGV 177 TT ++L YLV MP G +S+RIE + ER LK+ ++ G G I+RTA G Sbjct: 117 TTFVSLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKEALSSLDVPDGVGLIVRTAGVGK 175 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 EL D L W + + + + ++ E + R +RD+ ++ I +DS Sbjct: 176 SPEELQWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPK 235 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 +E E P+ ++++ Y G P+F + +E++I+ A +R+V L SGG ++ID T Sbjct: 236 IFEKAKEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVT 295 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+T +DIN+ ++++T NTN+EA IARQLRLR+LGG+++IDFIDM H+ Sbjct: 296 EALTAIDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQ 355 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V + + A+ DR + ++ S GL+EM+R+R S+ + CP C G G V+ Sbjct: 356 REVENRIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDN 415 Query: 418 E 418 E Sbjct: 416 E 416 >UniRef50_A1AW88 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteobacteria RepID=A1AW88_RUTMC Length = 584 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 136/428 (31%), Positives = 241/428 (56%), Gaps = 8/428 (1%) Query: 5 LLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N SE RV + L ++IE + GNIY G++SRV ++AAFVD G + Sbjct: 4 ILINAIYSEEIRVGIVKNKKLTGLNIETSLNKKTKGNIYHGKISRVEQSLEAAFVDYGKE 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 K FL ++ E + + + + IS+++++GQ+++VQ+ K+ G KGA L+T I Sbjct: 64 KQGFLPFKEV---AETLHNDVKAKGEKLTISDVLKEGQEIIVQIEKEERGNKGAALSTYI 120 Query: 124 TLPSRYLVFMPG-ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAE 181 L Y++ MP + G+S++I + +R+ LK+++++ G IIRTA G E Sbjct: 121 NLAGAYMILMPNNPKNHGISRQIVA-LDRQSLKEIISKIILPNHSGLIIRTAGSGKSFEE 179 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L + YL +W + + +Y E + R LRD ++ D + +D ++ Sbjct: 180 LQWEVDYLSDLWKSINTATLTRSAPFLIYQESDIIIRTLRDHLRSDTDSVIIDELEAFQN 239 Query: 242 LLEFTSEYIPEMTSKLEHY-TGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 EF S +P +++ + +F+ +E +++ R+V L++G ++ D TEA+ Sbjct: 240 AKEFVSFVLPHYLDRIKFFDVSEHSLFNHMGIEAQVKSVFNREVSLRTGAIIVFDPTEAL 299 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +DIN+ ++++T +NTN+EAT+ IA QL+LR++GG+++IDFIDM +E+HR + Sbjct: 300 TAIDINSARATKGADIEETAYNTNLEATKEIALQLQLRDIGGLVVIDFIDMASEEHRVSI 359 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 ++E+A + DR + + S GL+EM+R+R S+ + C CHGRGT T+ T+ Sbjct: 360 EKAMEKATNADRARIQIGTISQFGLLEMSRQRLMNSVTESVEKPCSACHGRGTTPTIPTL 419 Query: 421 CYEIMREI 428 I+R++ Sbjct: 420 ALTILRQL 427 >UniRef50_Q8DL99 Ribonuclease E n=3 Tax=Chroococcales RepID=Q8DL99_THEEB Length = 668 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 146/381 (38%), Positives = 218/381 (57%), Gaps = 17/381 (4%) Query: 38 VGNIYKGRVSRVLPGMQAAFVDIG-LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISEL 96 VG+IY G V VLPG+ AAFV++G + F+H SD+ G + + T I+EL Sbjct: 34 VGDIYLGVVENVLPGIDAAFVNLGDASRNGFIHVSDL--------GPLRLKRTAGAITEL 85 Query: 97 VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKK 156 + Q ++VQV+K+P GTKG RLT +I+LP RYLV MP V +S+RI +E+ER RL+ Sbjct: 86 LAPQQKVLVQVMKEPTGTKGPRLTGNISLPGRYLVLMPYGRGVNLSRRITNEAERHRLRA 145 Query: 157 VVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERK--KRPQTRYQLYG-EL 213 + G ++RT AEGV E + D L+R W + ++ RP QL G + Sbjct: 146 LGILVKPAGMGLLVRTEAEGVSEEAILEDLELLQRQWETIQQQAAASRPP---QLLGRDD 202 Query: 214 ALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSK--LEHYTGRQPIFDLFD 271 Q+VLRD ++++RI VD+ + + + + ++++ PI D F Sbjct: 203 DFIQKVLRDVYSSDVNRIVVDTPDGVKRVKQHLKNWNVNRPVGVLIDYHQEPIPILDYFR 262 Query: 272 VENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAI 331 V I+ AL+ +V+L SGGY+II TEA+T +D+N+G+F +T+ TN EA I Sbjct: 263 VNAAIREALKPRVDLPSGGYIIIQPTEALTVIDVNSGSFTSSATSRETVLWTNCEAATEI 322 Query: 332 ARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRK 391 ARQLRLRN+ G+II+DFIDM++ + +L +AL D+ + + S LGLVE+TRK Sbjct: 323 ARQLRLRNIAGVIIVDFIDMDSRRDQLLLLEHFSKALRADKARPQIAQLSELGLVELTRK 382 Query: 392 RTRESIEHVLCNECPTCHGRG 412 R ++I + C C G G Sbjct: 383 RQGQNIYELFGRPCSACGGLG 403 >UniRef50_C5AD76 Ribonuclease E n=21 Tax=Proteobacteria RepID=C5AD76_BURGB Length = 1125 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 153/429 (35%), Positives = 235/429 (54%), Gaps = 14/429 (3%) Query: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L N T E RVA +DG L +I IE R GNIYKG ++R+ P ++A FV+ G D Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRD--ISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL P E + +R I + +R+GQ+L+VQV K+ G KGA LTT Sbjct: 64 RHGFL------PFKEVARQYFRDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTT 117 Query: 122 DITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGE 179 I+L RYLV MP G VS+RIE + ER+ L++ +A+ +G I RTA G Sbjct: 118 FISLAGRYLVLMPNNPRGGGVSRRIEGD-ERQELRETMAQLEIPEGMSMIARTAGIGRSA 176 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQL--YGELALAQRVLRDFADAELDRIRVDSRL 237 EL D YL ++W + K + Y E +L R +RD+ ++ I +D+ Sbjct: 177 EELQWDLNYLLQLWHAIEAASKSGHAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTE 236 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 ++ F +P+ K++ Y P+F F +E++I+ A R V L SGG ++ID T Sbjct: 237 IHDQARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHT 296 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+ +D+N+ ++++T TN+EA +ARQLRLR+LGG+I+IDFIDM + + Sbjct: 297 EALVAIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQ 356 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V L+ AL DR + + S GL+E++R+R R ++ CP C+G G ++ Sbjct: 357 REVEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDT 416 Query: 418 ETVCYEIMR 426 E+ +++R Sbjct: 417 ESSALQVLR 425 >UniRef50_A6LNV2 Ribonuclease, Rne/Rng family n=2 Tax=Thermosipho RepID=A6LNV2_THEM4 Length = 465 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 151/438 (34%), Positives = 241/438 (55%), Gaps = 36/438 (8%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M L++N + A I+ L E+ + E + + GNIY GR+ RV+ + A FV+I Sbjct: 1 MEKILVLNSLDNGLHYAIIENNRLVELASDEEEK--LTGNIYLGRIERVVNALDALFVNI 58 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G K FL D+ +K F + +L G ++VQV KDP+G KG +LT Sbjct: 59 GTKKNGFLRFKDV----------PEKYFEFFSLKKL-ENGGKILVQVKKDPVGDKGPQLT 107 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGE 179 ++I++ RY+V P + VGVS++IE E ER+RL + + ++ G I+RTA+EG+ E Sbjct: 108 SNISVAGRYVVLFPFSEVVGVSKKIEDEDERKRLYDLAGRFSEKYNLGVIMRTASEGLDE 167 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + S+ L + K++E KR + LY E L +LR+ +LT Sbjct: 168 VHIMSEIDILSKKINKIIESFKRKRKAQVLYKEENLLDYILRE-------------KLTK 214 Query: 240 EALLEFTSEY--IPEMTSKLEHYTGRQPI-------FDLFDVENEIQRALERKVELKSGG 290 + L T+ + + + L+ ++ R I FD D+ + L+RKV L SGG Sbjct: 215 DVKLIITNNFKHVELIRKYLKIFSKRPKIEIIDGDSFDYMDIYKYFRELLKRKVLLPSGG 274 Query: 291 YLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFID 350 +IID+ EA+T +D+N+ FV +N +T F TN EA I RQLRLRN+GGII+IDFID Sbjct: 275 EIIIDKAEALTVIDVNSKHFVKGKNQQETAFQTNKEAVSEIFRQLRLRNIGGIILIDFID 334 Query: 351 MNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHG 410 M++++ ++ +L +++ + KD+ K + GF+ LGL+EM+RKRT S CP C+G Sbjct: 335 MDSDEKKKLILKQIDEEIKKDKSKIEIFGFTRLGLLEMSRKRTVRSFFENYITICPICNG 394 Query: 411 RGTVKTVETVCYEIMREI 428 G + + + ++ ++I Sbjct: 395 TGFIVSPKMTLKKLYQKI 412 >UniRef50_Q7U4C5 Ribonuclease E n=16 Tax=cellular organisms RepID=Q7U4C5_SYNPX Length = 663 Score = 247 bits (631), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 143/385 (37%), Positives = 216/385 (56%), Gaps = 19/385 (4%) Query: 38 VGNIYKGRVSRVLPGMQAAFVDIG-LDKAAFLHASDIMPH--TECVAGEEQKQFTVRDIS 94 +G++Y G V VLPG+ AAFV+IG +K F+H +D+ P + AG I+ Sbjct: 47 IGDVYLGTVENVLPGIDAAFVNIGESEKNGFIHVTDLGPLRLKKGSAG----------IT 96 Query: 95 ELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERL 154 EL+ Q ++VQV+K+P GTKG RLT ++ LP RYLV P V +S+RI SE+ER RL Sbjct: 97 ELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQPHGQGVNISRRISSEAERNRL 156 Query: 155 KKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELA 214 + + G +IRT A+G+ E +L D L R W + + + L + Sbjct: 157 RALGVLIKPPGAGLLIRTEADGIAEDQLIDDLESLLRQWEAIQQAAETAAPPVLLNRDED 216 Query: 215 LAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKL--EHYTGRQPIFDLFDV 272 R+LRD +L R+ VD A + S ++ K+ E ++ + + F V Sbjct: 217 FINRILRDHTSTDLVRVVVDE----PAAVARVSSFLGAEADKVLVEAHSEPSELLEHFKV 272 Query: 273 ENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIA 332 I+ AL+ +V+L SGGY+II+ TEA+T +D+N+G+F N +T+ TN EA IA Sbjct: 273 NAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGSFTRSANARETVLWTNCEAAIEIA 332 Query: 333 RQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR 392 RQL+LRN+GG+IIIDFIDM++ + ++L A+ D + + + LGLVE+TRKR Sbjct: 333 RQLKLRNIGGVIIIDFIDMDSRRDQLQLLEHFTTAVRDDAARPQIAQLTELGLVELTRKR 392 Query: 393 TRESIEHVLCNECPTCHGRGTVKTV 417 ++I + CP+C G G V + Sbjct: 393 QGQNIYELFGRACPSCGGLGHVAVL 417 >UniRef50_P72656 Ribonuclease E homolog n=10 Tax=Cyanobacteria RepID=RNE_SYNY3 Length = 674 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/380 (36%), Positives = 216/380 (56%), Gaps = 14/380 (3%) Query: 38 VGNIYKGRVSRVLPGMQAAFVDIG-LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISEL 96 VG+IY G V +LP + AAF++IG +K F+H SD+ G + + T ISEL Sbjct: 34 VGDIYLGLVDNILPSIDAAFINIGDTEKNGFIHVSDL--------GPVRLRRTAGSISEL 85 Query: 97 VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKK 156 + Q ++VQV+K+P G KG RLT +I++P RY+V MP V +S+RI E ER RL+ Sbjct: 86 LSPQQRVLVQVMKEPTGNKGPRLTGNISMPGRYMVLMPYGRGVNLSRRINREEERSRLRA 145 Query: 157 VVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALA 216 + G ++RT AE V E + D L++ W V ++ L + Sbjct: 146 LAVLIKPPGMGLLVRTEAEDVPEDAIIEDLENLQKQWELVQQQAMTRSAPMLLDRDDDFI 205 Query: 217 QRVLRDFADAELDRIRVDS----RLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDV 272 +RVLRD +E++RI VD+ + + L+ + +PE ++ + I + F V Sbjct: 206 KRVLRDMYSSEVNRIVVDTPAGMKRIKQQLMNWDQGRLPEGV-LIDCHRESLSILEYFRV 264 Query: 273 ENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIA 332 I+ AL+ +V+L SGGY+II+ TEA+T +D+N+G+F N +T+ TN EA IA Sbjct: 265 NATIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTHSANSRETVLWTNYEAATEIA 324 Query: 333 RQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR 392 RQL+LRN+GG+IIIDFIDM++ + ++L + L D+ + + + LGLVE+TRKR Sbjct: 325 RQLKLRNIGGVIIIDFIDMDSHKDQLQLLEHFNRCLETDKARPQIAQLTELGLVELTRKR 384 Query: 393 TRESIEHVLCNECPTCHGRG 412 +++ + CP C G G Sbjct: 385 QGQNLYELFGQPCPECGGLG 404 >UniRef50_B3QZC2 Ribonuclease, Rne/Rng family n=12 Tax=Chlorobiaceae RepID=B3QZC2_CHLT3 Length = 582 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 216/365 (59%), Gaps = 7/365 (1%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP-GASHVGVSQRIESESER 151 I+ ++ ++VQV+K+P+ KGARLT+DIT+ R++V +P G+ H+ +S+RI + ER Sbjct: 170 IASKLKPNDSILVQVIKEPISNKGARLTSDITIAGRFMVLLPFGSGHLAISKRIVNRRER 229 Query: 152 ERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYG 211 RLK +V + G I+RT AE E L +D L W ++ E K + ++ Sbjct: 230 RRLKGIVRSILPKGFGAIVRTVAEEQDELLLKTDLEKLLAKWKQIEETVKDAKPPKLIFK 289 Query: 212 ELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFD 271 E + VLRD ++ + +S+ Y+ L F PEM ++ HY G+ P+F+ + Sbjct: 290 EDTMISSVLRDSLTEDVTELVTNSQHIYKETLTFVRWAAPEMEKRVSHYKGKLPLFESYG 349 Query: 272 VENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAI 331 + +++ RKV LKSGGYLII+ TEAM +D+N+G + R ++ TN+EA + I Sbjct: 350 IAKDVESIFSRKVWLKSGGYLIIEHTEAMVVIDVNSGRYAAKREQEENSLKTNLEAAKEI 409 Query: 332 ARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRK 391 +RQLRLR++GGII++DFID+ +E + R+V +++ +DR K+++ S GL+++TR+ Sbjct: 410 SRQLRLRDIGGIIVVDFIDLLDEKNARKVYDTMKTEFRRDRAKSNILPMSEFGLMQITRE 469 Query: 392 RTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV----HHAYDSDRFLVYASPA 447 R R S+ + +ECP C G G V+ T ++I R + + +HA+ +R +Y S Sbjct: 470 RIRPSLMQRMGDECPACGGSGVVQARHTTIHQINRWLRKYALNGNHAF--ERLDLYVSQT 527 Query: 448 VAEAL 452 VA+ L Sbjct: 528 VAQPL 532 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 46/70 (65%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +LL+N + E +VA ++ G L E+ IER VG+IY GRV +V+ G+QAAF+DIG Sbjct: 7 QLLMNKSGDEVQVALVEDGRLAEVFIERPESTRNVGDIYLGRVQKVVEGLQAAFIDIGHS 66 Query: 64 KAAFLHASDI 73 FLH SD+ Sbjct: 67 SDGFLHFSDV 76 >UniRef50_A5FJP9 Ribonuclease, Rne/Rng family n=29 Tax=Bacteroidetes RepID=A5FJP9_FLAJ1 Length = 543 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 137/418 (32%), Positives = 232/418 (55%), Gaps = 21/418 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 + EL++ + A + G L E+H E E VG+I+ ++ + + G+ AAFV++ Sbjct: 30 VNKELIIRSSSEAVDFALLKDGKLIELHKEEEKSNFQVGDIFIAKIRKPVAGLNAAFVNV 89 Query: 61 GLDKAAFLHASDIMPH-------TECVAGEEQKQFTVRD------------ISELVRQGQ 101 G +K AFLH D+ P+ + V+ + K F+++ I++++ Q Sbjct: 90 GFEKDAFLHYHDLGPNLASQLKFIKLVSAGKLKDFSLKTFQFEKEIDKDGIITDILSANQ 149 Query: 102 DLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY 161 ++VQVVK+P+ TKG R++ +++L R++V +P + V +SQ+IE + E++RLKK+V Sbjct: 150 SVLVQVVKEPISTKGPRISAELSLAGRFIVLVPFSDRVSISQKIEDKKEKDRLKKLVLSI 209 Query: 162 CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 221 + G I+RT AEG AEL D L W+ + ++ ++ GEL A +LR Sbjct: 210 KPKGFGVIVRTVAEGKNVAELEKDLQNLLGRWSAMCKKLPTAHHPSKVLGELNRASSILR 269 Query: 222 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHY-TGRQPIFDLFDVENEIQRAL 280 D + I++D Y E+ E P S ++ Y + PIF+ +++E +I+ + Sbjct: 270 DVFNDTFSGIQIDDEELYHQTKEYLQEIAPSKQSIVKFYQSNDTPIFEKYNIERQIKTSF 329 Query: 281 ERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH-RNLDDTIFNTNIEATQAIARQLRLRN 339 R V + G YLII+ TEA+ +D+N+G N +DT N+ A IARQLRLR+ Sbjct: 330 GRTVSMSKGAYLIIEHTEALHVIDVNSGNRSNKATNQEDTAMEVNMIAAAEIARQLRLRD 389 Query: 340 LGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESI 397 +GGII++DFIDM+N ++R+ + L + +S D+ K + S GLV++TR+R R + Sbjct: 390 MGGIIVVDFIDMSNPENRKVLFDFLREEMSDDKAKHKILPPSKFGLVQITRQRVRPEV 447 >UniRef50_B2V9I2 Ribonuclease, Rne/Rng family n=4 Tax=Hydrogenothermaceae RepID=B2V9I2_SULSY Length = 470 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 142/437 (32%), Positives = 236/437 (54%), Gaps = 23/437 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +L+V T ++ I E+ IE G+IYKG+V R M+A FVDI Sbjct: 1 MDRKLIVTKGFKNTFYLILEDNIPVELKIEDIEISKQTGSIYKGKVLRYSQAMEAFFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK AFL DI C ++ + + +G ++VQV + P+ TKGA+L+ Sbjct: 61 GEDKEAFLPKKDI-----C-----------EEVCKNIDKGSSILVQVKRSPVSTKGAKLS 104 Query: 121 TDITLPSRYLVFMPGAS-HVGVSQRIESESER----ERLKKVVAEYCDEQGGFIIRTAAE 175 I+LP +YLV +P + + +S + E ER ER+K ++ E E G IIRTAA+ Sbjct: 105 CKISLPGKYLVLLPQSKGKISISSKYEDNDERNEIKERIKNLLHEINQENFGLIIRTAAK 164 Query: 176 GVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDS 235 + + D +L +W ++ + + + +Y E A +LRD+A + I D Sbjct: 165 DAPDEAILEDFKFLIELWNQIQKDYNKKKAPSVIYEEPFKAFAILRDYAGS-FSEIISDD 223 Query: 236 RLTYEALLEFTSEYIPEMTSKLEHYTGR-QPIFDLFDVENEIQRALERKVELKSGGYLII 294 + + +F E K+ Y R + +F ++++ I + L LKSG YL+I Sbjct: 224 VSILKLIKKFVLENFTNANIKMTPYRKRKESLFYEYELDKLINKILSPYAYLKSGSYLVI 283 Query: 295 DQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 +TEA+ +D+N+G+ +NL++T F N+EA I RQ+RLR+L GI++IDFIDM N+ Sbjct: 284 QETEALVVIDVNSGSCHKQKNLEETAFRINLEAIPEIVRQIRLRDLSGIVVIDFIDMINQ 343 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 +H+ ++ L++ KD+ + G + LGL+E++RK+ ES+ L + C C+GRG + Sbjct: 344 EHKEAIVERLKEEFKKDKRPVKIKGLTQLGLLELSRKKLEESLIKQLSDYCQHCYGRGYI 403 Query: 415 KTVETVCYEIMREIVRV 431 K+ + V +E+ + I ++ Sbjct: 404 KSQDVVIFELEKTINKL 420 >UniRef50_B0SXB4 Ribonuclease, Rne/Rng family n=2 Tax=Alphaproteobacteria RepID=B0SXB4_CAUSK Length = 905 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 156/474 (32%), Positives = 247/474 (52%), Gaps = 46/474 (9%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L++ ETRV +DG ++E E + R+ + GNIY +V+RV P +QAAF++ Sbjct: 1 MSKKMLIDAAHAEETRVVVVDGSRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMP--HTECVAGEE--------------------------------- 84 G ++ FL ++I P + VA E Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSHDDEDDHDHGRDGDDGDAVDDEEDAV 120 Query: 85 ------QKQFTVRD--ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG- 135 +K+ +R I E++R+ Q ++VQVVK+ G KGA LTT ++L RY V MP Sbjct: 121 EEELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGRYGVLMPNT 180 Query: 136 ASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWT 194 A G+S++I + ++R+RLK VV QG G I+RTA +AE+ D YL R+W Sbjct: 181 ARGGGISRKITTITDRKRLKSVVQGLDVPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWE 240 Query: 195 KVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMT 254 + + +Y E L +R +RD D +L+ I V+ Y+ +F +P Sbjct: 241 NIRDNTLHSIAPALIYEEEDLVKRAIRDMYDKDLEGIWVEGEAGYKEARDFMRMLMPSQA 300 Query: 255 SKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR 314 K+ Y P+F +E+ + + V L+SGGYL+I+QTEA+ +D+N+G R Sbjct: 301 KKVFPYREAAPLFVKHKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAIDVNSGKATRER 360 Query: 315 NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVK 374 N++ T TN+EA + ARQLRLR+L G+I+IDFIDM+ + R V L+ +L DR + Sbjct: 361 NIEATALKTNMEAAEEAARQLRLRDLAGLIVIDFIDMDEGKNNRAVEKILKDSLKDDRAR 420 Query: 375 TSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 + S GL+E++R+R R + + C C G G V++VE+ +R + Sbjct: 421 IQMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCDGTGRVRSVESSALAALRAV 474 >UniRef50_B1LBB5 Ribonuclease, Rne/Rng family n=6 Tax=Thermotogaceae RepID=B1LBB5_THESQ Length = 459 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 143/447 (31%), Positives = 244/447 (54%), Gaps = 25/447 (5%) Query: 17 AYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMP- 75 A +D G L+E+ + I G IY GR+ +++PG++AAFV IG + AFL S+I Sbjct: 4 AVMDDGELEEVFFD--EIETIAGKIYLGRIEKIVPGLEAAFVKIGKGRNAFLKLSEINEA 61 Query: 76 -HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 + G+E V++GQ ++VQV KD G KG ++T I + R++V P Sbjct: 62 YRKTVLKGQE------------VKEGQKILVQVKKDASGKKGPQVTPQIGIADRFVVIFP 109 Query: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVW 193 +GVS++IE SER RL+ + + G G I+RTAAEGV E E+ + W Sbjct: 110 FKKVIGVSRKIEDASERRRLRTIAFSLRKKYGVGVIMRTAAEGVDEEEIIKNFERALEKW 169 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 +V+++ +R + LY E + Q ++++ ++++D++ + R +LLE +Y+ + Sbjct: 170 NQVLQKFRRSRKPKLLYEEDPVEQ-IIKEKVNSKIDKLIYNDR----SLLETLQKYLQNL 224 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 K E +F+ F V +++ L R V LKSGG ++ID+TEA+T +D+N+ ++ Sbjct: 225 PKKPEIEYVEGDLFEKFSVYERLKKLLSRTVPLKSGGNIVIDRTEALTVIDVNSESYTDA 284 Query: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 N ++ TN+EA + I RQL LRN+GGI++IDFI + ++L ++ +D Sbjct: 285 ENQEELALKTNMEAIEEIVRQLILRNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGT 344 Query: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 + + GF+ LGL+E+TRKRT ++ +L CP C G G V + + + I ++ ++ Sbjct: 345 RIEIFGFTNLGLLEITRKRTTRPLDTLLFTRCPVCSGTGKVLSQKILLKRIREDLKKLK- 403 Query: 434 AYDSDRFLVYASPAVAEALKGEESHSL 460 D + + P ++ K E+ L Sbjct: 404 --DFEEVTLKVHPNMSGYFKREDIKKL 428 >UniRef50_B5ZDP7 Ribonuclease, Rne/Rng family n=12 Tax=Alphaproteobacteria RepID=B5ZDP7_GLUDA Length = 1009 Score = 239 bits (609), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 130/339 (38%), Positives = 194/339 (57%), Gaps = 3/339 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGA-SHVGVSQRIESESER 151 I E++R+ Q L+VQVVK+ G KGA LTT I+L RY V MP + GVS++I S ++R Sbjct: 165 IQEVIRRRQILLVQVVKEERGNKGAALTTYISLAGRYCVLMPNSLRGGGVSRKITSVADR 224 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 RLK V+AE +G I+RTA E+ D YL R+W + + +Y Sbjct: 225 RRLKDVIAELQIPRGMAMIVRTAGAQRPRPEIMRDCEYLLRLWDDIRDHTMHSVAPALIY 284 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHY-TGRQPIFDL 269 E +L +R +RD ++ I VD +++ EF +P+ K++ + G QP+F Sbjct: 285 EEASLIKRAIRDIYTRDVGEILVDGEAGWKSAREFMRMLMPQSAPKVKCWRDGGQPLFSH 344 Query: 270 FDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQ 329 F+VE + L V+L+SGGYL+I+Q EA+ +D+N+G RN+++T TN+EA + Sbjct: 345 FNVEGLLDSMLSPTVQLRSGGYLVINQAEALVAIDVNSGRATRERNIEETALRTNLEAAE 404 Query: 330 AIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMT 389 +ARQLRLR+L G+I+IDFIDM + H V L+ AL DR + V S GL+EM+ Sbjct: 405 EVARQLRLRDLAGLIVIDFIDMESRKHNGMVERRLKDALRTDRARIQVGAISHFGLLEMS 464 Query: 390 RKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 R+R R SI CP C G G ++ E+ ++R + Sbjct: 465 RQRLRPSIAESTFTPCPHCQGTGIIRGTESAALHVLRAV 503 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M +L++ T +E TRV +DG L++ +E A++ + GNIY +V RV P +QAAFV+ Sbjct: 1 MNKRMLIDTTHAEETRVVVMDGNRLEDYDVEASAKKQLKGNIYLAKVIRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL S+I P Sbjct: 61 YGGNRHGFLAFSEIHP 76 >UniRef50_Q89AH3 Putative truncated ribonuclease E n=22 Tax=Bacteria RepID=RNE_BUCBP Length = 410 Score = 238 bits (607), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 143/395 (36%), Positives = 224/395 (56%), Gaps = 16/395 (4%) Query: 5 LLVN-VTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N + + R+A IDG L ++++E ++ NIYKG++ R+ P ++AAFVD G Sbjct: 4 MLINAIEIKKLRIALIDGQQLYDLNVENIDKKQRKSNIYKGKIVRIEPSLEAAFVDYGEK 63 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 K FL +I + + +++I +++GQ+ +VQ+ K+ GTKGA LTT I Sbjct: 64 KNGFLPLKEISRNYFPNNCSNYRHLHIKNI---LKEGQECIVQIDKEERGTKGALLTTFI 120 Query: 124 TLPSRYLVFMPGASHV-GVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAE 181 +L YLV MP H+ G+S++IE +R LKK+++ E G IIRT+ G Sbjct: 121 SLAGNYLVLMPNCPHLEGISRKIEG-IDRFHLKKIISMLMVPENMGIIIRTSGVGRSIET 179 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D + + W + + + ++ E + R LRD+ ++ I VD+ Sbjct: 180 LQLDLNFRVKNWYTIKKSAEINTAPCLIHKESNIVIRTLRDYLKKDIQEIIVDN----PE 235 Query: 242 LLEFTSEYIPEMTS-----KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 +LE +Y+ M K++ YTG P+F + +E++I L R V+L SGG +IID Sbjct: 236 ILELARDYMFNMNCSYFEKKIKLYTGSDPLFSYYKIESQINALLRRIVKLPSGGSIIIDY 295 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+T +DIN+ N+++T FNTN EA + IARQLRLR+LGG+I+IDFIDM+ H Sbjct: 296 TEALTAIDINSSQSTKGVNIEETAFNTNYEAVREIARQLRLRDLGGLIVIDFIDMSVLKH 355 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRK 391 ++ + L Q L KDR + V S GL+EM+R+ Sbjct: 356 QKMIELHLHQVLQKDRARVQVGSISQFGLLEMSRQ 390 >UniRef50_A2BYM7 S1 RNA binding domain:Ribonuclease E and G n=8 Tax=Prochlorococcus marinus RepID=A2BYM7_PROM5 Length = 608 Score = 237 bits (605), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 216/383 (56%), Gaps = 13/383 (3%) Query: 38 VGNIYKGRVSRVLPGMQAAFVDIG-LDKAAFLHASDIMPH--TECVAGEEQKQFTVRDIS 94 +G+I+ G V VLPG+ AAF+ IG +K F+H SD+ P + V G I+ Sbjct: 34 IGDIFLGTVENVLPGIDAAFIHIGESEKNGFIHVSDLGPLRLKKGVVG----------IT 83 Query: 95 ELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERL 154 EL+ Q ++VQV+K+P G KG RLT +I+LP +YL+ P V +S++I +++ER RL Sbjct: 84 ELLEPKQKVLVQVMKEPTGNKGPRLTGNISLPGKYLILQPFGQGVNISRKINTDTERSRL 143 Query: 155 KKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELA 214 + + G + RT AE + E L D L + W +V++ + Q + + Sbjct: 144 RALGVLIKPPSTGLLFRTEAEKIKEELLIEDLENLIQQWDQVLKISETCQPPNLINRDED 203 Query: 215 LAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVEN 274 + ++LRD A ++ +D+++ E +F + L + + I + + + Sbjct: 204 FSLKILRDCIKASTSKVVIDNKVALEKAKDFLINNDSNVDLVLHNNDINEHILEKYQINK 263 Query: 275 EIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ 334 IQ+ALE +V+L SGGY+II+ TEA+T +D+N+G+F N T+ TN EA I+RQ Sbjct: 264 TIQKALEPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQ 323 Query: 335 LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTR 394 ++LRN+GG+++IDFIDM + + ++L A+ D + + + LGLVE+TRKR Sbjct: 324 MKLRNIGGVLVIDFIDMESRRDQFQLLEQFTLAIKDDSARPQIAELTELGLVELTRKRQG 383 Query: 395 ESIEHVLCNECPTCHGRGTVKTV 417 ++I + +C C+G G +K++ Sbjct: 384 QNIYELFGKKCNACNGLGHIKSL 406 >UniRef50_A5I670 Ribonuclease G n=12 Tax=Clostridium RepID=A5I670_CLOBH Length = 479 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 142/492 (28%), Positives = 253/492 (51%), Gaps = 29/492 (5%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E+ + R+ + ++E+ IE + + VG IY G V ++P +++AFVDIG + Sbjct: 3 EIFIERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGWN 62 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 K A+L+ +T +++G ++V+VVK+ L KG ++T I Sbjct: 63 KNAYLYLDKKFNNTH------------------IKKGDYILVEVVKEDLNKKGPKVTNAI 104 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELA 183 T+P RY V + + S +I+ E R ++ + + D G +IRT A + Sbjct: 105 TIPGRYTVLQILNNEITFSHKIKDEKIRTEIQNNIVKPKD--VGILIRTEAINTSIENIN 162 Query: 184 SDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL 243 ++ L ++++ ++E+ K L+ + ++LRD + + +I ++ R Y + Sbjct: 163 NEIRRLYKIYSSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYVS 222 Query: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 EF EY E KL+ Y G + + D + +E EI +KV L GGY+IID+TEAM V Sbjct: 223 EFLKEY-GENNIKLDIYEGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYVV 281 Query: 304 DINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 D+N+G V +++ TIF TN+EA I Q+ LRNL GII+IDFIDM+NE+ + +VL Sbjct: 282 DVNSGKNVKGNSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLDK 341 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYE 423 L+Q L +D+ K+ V F+ L LV++ RKR ++I + C C G+G++ + + Sbjct: 342 LKQGLKRDKNKSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKLL 401 Query: 424 IMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEI--------FVGKQVKVQI 475 I EI+ + + + + + + + ++E+E ++ + + ++ Sbjct: 402 IRNEIINILNMREIKDIYIELNKRYKDYIDKNRIQFISEIEALEKNIYINYIDAENQYKV 461 Query: 476 EPLYNQEQFDVV 487 EPL + Q + V Sbjct: 462 EPLIFKNQIEDV 473 >UniRef50_C3WSU7 Ribonuclease G n=6 Tax=Fusobacterium RepID=C3WSU7_9FUSO Length = 458 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 142/454 (31%), Positives = 250/454 (55%), Gaps = 26/454 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M L+++ + ET++A ++ L E++IER ++ I GNIYKG+V +L + FVDI Sbjct: 1 MKKYLILSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL+K AFL + E +K + +I + L+VQ +P KGA+LT Sbjct: 61 GLEKNAFL------------SFENKKDISKYNIDD------KLIVQAETEPRDEKGAKLT 102 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 D ++ LV +P + ++ +S++I+ E RLK + + G I+RT +EG E Sbjct: 103 LDYSINGENLVLLPKSKNLSISKKIKDIEEVNRLKNI---FLSTDNGLILRTNSEGKSEE 159 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L + L+ + ++ + ++ LY ++ ++V+ F D+ I D + E Sbjct: 160 NLLEEYRRLENIDNQINKDFEKINVGL-LYDVNSILKKVVALFDDSTEKFIIDDEHIFKE 218 Query: 241 A--LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 LLE + ++ KL Y + IF+ +++ ++I+RAL+RKV L SG Y+II++TE Sbjct: 219 IKYLLEEIGK--KDLIKKLRKYFKDEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTE 276 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ ++D+NTG G++ + IF TN+EAT+ IARQ++LRNL GIIIIDFIDM +++ Sbjct: 277 ALISIDVNTGQNTGNKTSQEIIFQTNLEATKEIARQIKLRNLAGIIIIDFIDMKKFSNKK 336 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 R+L ++ LSKD+V+ + ++ LGL++ TRKR + + +C C G G + + Sbjct: 337 RILEKFKKYLSKDKVEINSVEYTNLGLIQFTRKRQGKELALYYREKCQYCEGIGYFLSKD 396 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEAL 452 + ++ ++ + D + ++ + + L Sbjct: 397 RIILNLLEDLNNQIKSQDIKKIVIRTKKDIIKEL 430 >UniRef50_C9M9G5 Ribonuclease G n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9G5_9BACT Length = 495 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 158/449 (35%), Positives = 244/449 (54%), Gaps = 27/449 (6%) Query: 13 ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASD 72 E RVA ++ G L+++++E G+IY RV ++ GM AAF+++G + FL+ +D Sbjct: 16 ERRVAVVEDGRLRDLYVEHGRPVQQSGDIYLARVESIVSGMNAAFLNLGDGRNGFLYLAD 75 Query: 73 IMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVF 132 K F+V + EL+ VQV K P +KGAR+T ++LP R+ V+ Sbjct: 76 ------------AKGFSVHENGELI-------VQVTKTPRRSKGARVTPQVSLPGRFFVY 116 Query: 133 MPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRV 192 +P A VGVS++I S +R+RL+ +V E+GG IIRTAA+ + +LA+D A L+ Sbjct: 117 LPFAGSVGVSRKIGSAKDRQRLRALVGSV--ERGGVIIRTAAQDAADEDLAADLAQLQEQ 174 Query: 193 WTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE 252 W ++ + K + L+ E R LRD + + DSR ++A+ F S Sbjct: 175 WERIEQSAKLRMSPGVLWQEDGFLIRALRDELAHHISEVVTDSREAFDAVKGFVSAAGAG 234 Query: 253 MTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG 312 + ++ +F+ + EI+ + KV L SGGYL+IDQTEA+T +D+N+G V Sbjct: 235 WSGQVSLLEKGIDLFEYCGLTQEIESLIRPKVLLPSGGYLVIDQTEALTAIDVNSGKCVD 294 Query: 313 HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 +L T+ TN+EA + IARQ+RLR +GGI+I+DFIDM +E R VL +L+ A + D Sbjct: 295 GSSLSATVKTTNLEAAREIARQIRLRAIGGIVIVDFIDMESEADRTAVLDALKDASAADP 354 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVH 432 K V G ++LGL E+TRKRTR + + C +C T K E + + R + + Sbjct: 355 NKVRVYGMTSLGLAEVTRKRTRLDLRSQMTQPCSSCCEGRTWKD-EALAASVKRRLRKAF 413 Query: 433 HAYDSDRFLVYASPAVAE-----ALKGEE 456 S LV + +A+ LKG E Sbjct: 414 AGSSSGWALVAMNDELAQIVAQKWLKGWE 442 >UniRef50_Q2IVP9 RNAse E n=3 Tax=Bradyrhizobiaceae RepID=Q2IVP9_RHOP2 Length = 1060 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 127/336 (37%), Positives = 199/336 (59%), Gaps = 2/336 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E++++ Q ++VQVVK+ G KGA LTT ++L RY V MP A G+S++I S +R Sbjct: 334 IQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDR 393 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 RLK+VV + +G G I+RTA + E+ D YL R+W V + + Q +Y Sbjct: 394 SRLKEVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWETVRDVTLKSQAPTLVY 453 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E +L +R LRD + E+D I+V Y+ +F +P ++ Y QP+F Sbjct: 454 EEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMHMLMPSNVRAVKLYRDGQPLFSRM 513 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 VE+++ V+L+SGGY++I+QTEA+ ++D+N+G +++DT TN+EA++ Sbjct: 514 GVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHHIEDTALKTNLEASEE 573 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 +ARQLRLR+L G+I+IDFIDM+ + + R V L L +DR + V S GL+EM+R Sbjct: 574 VARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSR 633 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMR 426 +R R S+ CP C G G V++V +V +++R Sbjct: 634 QRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLR 669 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV + G ++E E R+ + GNIY +V+RV P +QAAF++ Sbjct: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL S+I P Sbjct: 61 YGGNRHGFLAFSEIHP 76 >UniRef50_A6LQR5 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium RepID=A6LQR5_CLOB8 Length = 482 Score = 233 bits (595), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 142/482 (29%), Positives = 252/482 (52%), Gaps = 37/482 (7%) Query: 15 RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIM 74 RVA L E +E I+G IYKG++ ++P + + FVD+GLDK +L+ SD + Sbjct: 14 RVAIKSNNELIESIVEESKNEPIIGEIYKGKIKNIIPAINSVFVDLGLDKEGYLYYSDEL 73 Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 ++ +++G D++V+V+K+PL KGA+LT +++P +Y+V Sbjct: 74 K------------------AKGIKKGDDILVEVLKEPLNDKGAKLTAKVSIPGKYIVLNC 115 Query: 135 GASHVGVSQRIESESER-ERLKKV--VAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKR 191 + S+RIE + ++ E L + + + C +RT V L ++ + L Sbjct: 116 YEQGIEFSKRIEDKEKKIELLSNIEPLKDVC-----ITVRTEGANVDINILKNEISKLYD 170 Query: 192 VWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIP 251 + + ++ K ++YGE ++L +F+ E+ +I VD+ + ++ + F Sbjct: 171 EFQNIDKKMKHSLGVRKIYGEDLTLTKLLMNFSGEEIIKIYVDNSIDFDKISSFAK---G 227 Query: 252 EMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFV 311 + K+E Y G + +FD + +E E+ R KV L+ GGY++ID+TEAM +D+N+G + Sbjct: 228 QENLKIEKYEGYRKLFDFYGIEKELLRLRHNKVNLQCGGYIVIDRTEAMYVIDVNSGKNI 287 Query: 312 GHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKD 371 ++ + TI TN+EA + I +Q+RLRNL GII+IDFIDM ++ R V+ +L+++L D Sbjct: 288 KEKSFNKTILETNLEAAREIGKQIRLRNLSGIIVIDFIDMRDKSQRDIVMDALKESLRLD 347 Query: 372 RVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV 431 + + F+ L LV++ RKR +SI + EC C GRG + + + I +IVR+ Sbjct: 348 KGNVKIFPFTQLDLVQIARKRQGKSIYEYMEEECSLCKGRGIILKLSYIEGLIKNDIVRM 407 Query: 432 HHAYDSDRFLVYASPAVAEALKGEESHSLAEV-----EIFVGKQVKVQ---IEPLYNQEQ 483 + F + + ++ + E+ EI++ ++ IEPL Q Q Sbjct: 408 QEESSINCFHIQMDSVYKDRIRENIFEFMKEIDGLDKEIYLNYVDNIEGYKIEPLIFQGQ 467 Query: 484 FD 485 D Sbjct: 468 KD 469 >UniRef50_B6JHD4 Ribonuclease E (RNase E) n=19 Tax=Alphaproteobacteria RepID=B6JHD4_OLICO Length = 1123 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 128/338 (37%), Positives = 196/338 (57%), Gaps = 2/338 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E++++ Q ++VQVVK+ G KGA LTT ++L RY V MP A G+S++I S +R Sbjct: 423 IQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDR 482 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 RLK VV + +G G I+RTA + E+ D YL R+W V + + Q +Y Sbjct: 483 NRLKDVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWETVRDLTLKSQAPTLVY 542 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E +L +R LRD + E+D + V Y +F +P ++ Y QP+F Sbjct: 543 EEGSLIKRSLRDLYNKEIDEVLVSGEEGYHEARDFMKMLMPSNVRAVKLYRDNQPLFSRM 602 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 VE+++ V L+SGGYL+I+QTEA+ ++D+N+G +++DT TN+EA + Sbjct: 603 GVESQLDAMFSPVVTLRSGGYLVINQTEALVSIDVNSGRSTREHHIEDTALKTNLEAAEE 662 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 +ARQLRLR+L G+I+IDFIDM+ + + R V L L +DR + V S GL+EM+R Sbjct: 663 VARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMSR 722 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +R R S+ CPTC G G V++V +V +++R + Sbjct: 723 QRIRASVLESSTEPCPTCGGIGHVRSVASVALQLLRSL 760 Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV + G ++E E R+ + GNIY +V+RV P +QAAF++ Sbjct: 107 MPNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIE 166 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL S+I P Sbjct: 167 YGGNRHGFLAFSEIHP 182 >UniRef50_C4QQZ4 Ribonuclease G, putative (Fragment) n=1 Tax=Schistosoma mansoni RepID=C4QQZ4_SCHMA Length = 271 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 123/260 (47%), Positives = 173/260 (66%), Gaps = 14/260 (5%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 +L+NVTP E+RVA ++ GI+QE+++ER ARRG+VGNIY+GRV RVLPGMQAAFV+IGL + Sbjct: 1 VLINVTPMESRVALVENGIVQELYVERTARRGLVGNIYRGRVVRVLPGMQAAFVEIGLSR 60 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 AF+H +++ + + + ++ E GQ + VQV+KD +GTKGARLT D++ Sbjct: 61 TAFIHLNEVR-----LGAAGTRPAAIHELHE----GQSITVQVMKDMMGTKGARLTMDLS 111 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVV----AEYCDE-QGGFIIRTAAEGVGE 179 +PSRYLV+MP VG+SQ+IE E ERE LK+ + AE DE GGFI+RT AEGV + Sbjct: 112 IPSRYLVYMPFGDQVGISQKIEDEVEREHLKQQIRSLRAESPDELGGGFIVRTVAEGVQD 171 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 AEL D +L ++W V ER + + EL L+ R LRD + ++ +DSR TY Sbjct: 172 AELRHDMDFLLKLWRHVRERALVTEGPALISEELPLSLRTLRDLVGPGVIKVCIDSRETY 231 Query: 240 EALLEFTSEYIPEMTSKLEH 259 +EF E++P + +LEH Sbjct: 232 GKAIEFAREFVPGVEDRLEH 251 >UniRef50_UPI00003842F2 COG1530: Ribonucleases G and E n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003842F2 Length = 836 Score = 231 bits (589), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 136/375 (36%), Positives = 206/375 (54%), Gaps = 3/375 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E++++ Q ++VQVVK+ G KGA LTT ++L RY V MP A GVS++I S ++R Sbjct: 182 IQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGVSRKIVSATDR 241 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 RLK + E G IIRTA + E+ D YL R+W V E + +Y Sbjct: 242 RRLKSIANEMDIPDGMAVIIRTAGSERSKTEIKRDYEYLLRMWDSVRELTLKSSAPALVY 301 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGR-QPIFDL 269 E +L +R +RD ++D + VD Y ++ P K++ Y P+F Sbjct: 302 EEASLIKRSIRDLYSRDIDEVLVDGDEGYRLAKDYMRMLTPSHAKKVQPYKDPVMPMFHR 361 Query: 270 FDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQ 329 + VE ++ V+LKSGGY++I QTEA+ +D+N+G R++++T TN+EA Sbjct: 362 YQVEAQLDAMHSPVVQLKSGGYIVISQTEALVAIDVNSGRATKERHIEETALKTNMEAAD 421 Query: 330 AIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMT 389 +ARQLRLR+L G+I+IDFIDM + V L++AL DR + V SA GL+E++ Sbjct: 422 EVARQLRLRDLAGLIVIDFIDMEENRNNHAVERRLKEALKNDRARIQVGKISAFGLLELS 481 Query: 390 RKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVA 449 R+R R S++ + CP C G G V++VE+ I+R I S VY S A+A Sbjct: 482 RQRLRPSLQETTFSPCPHCGGTGLVRSVESAAVHILRAIEEEGIRRRSSEVTVYVSSAIA 541 Query: 450 EALKGEESHSLAEVE 464 + ++ +LA +E Sbjct: 542 LYILNQKRSALAAIE 556 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L++ T P ETRV ++G L+E+ +E +R + GNIY +V RV P +QAAFV+ G + Sbjct: 1 MLIDATHPEETRVVVVNGTRLEELDVETSTKRQLKGNIYLAKVVRVEPSLQAAFVEYGGN 60 Query: 64 KAAFLHASDIMP 75 + FL S+I P Sbjct: 61 RHGFLAFSEIHP 72 >UniRef50_A3VT88 Ribonuclease E n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VT88_9PROT Length = 1038 Score = 231 bits (588), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 137/398 (34%), Positives = 218/398 (54%), Gaps = 2/398 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E++++ Q ++VQVVK+ G KGA LTT ++L RY V MP A GVS++I ++S+R Sbjct: 386 IQEVIKRRQVMLVQVVKEERGNKGAALTTFLSLAGRYGVLMPNNARGGGVSRKISNQSDR 445 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 RL+K +AE G G IIRTA +AE+ D YL R+W + + + +Y Sbjct: 446 RRLRKAMAELNVPAGQGLIIRTAGAKRTKAEIKRDYDYLARLWDTIRSQTLQSVAPCLIY 505 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E +L +R +RD D + I V+ Y +F +P ++ Y ++P+F + Sbjct: 506 EEASLIKRAIRDLYDKDTAEILVEGEDGYREAKDFMKMLMPSHAKNVQPYREQEPLFLHY 565 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 VE ++ + V LKSGGYL+I QTEA+ ++D+N+G RN++ T TN EA Sbjct: 566 GVERQLDEMYQPVVTLKSGGYLVIQQTEALISIDVNSGKSTKERNVEATALKTNSEAAVE 625 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 +ARQ RLR+L G+I++DFIDM+ + R V ++AL DR + V S GL+EM+R Sbjct: 626 VARQCRLRDLAGLIVVDFIDMDENRNNRTVEKKFKEALKSDRARIQVGSISTFGLLEMSR 685 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE 450 +R R I CPTC G G V++VE I+R I + + A+ V+ Sbjct: 686 QRRRSGIVDGTTRTCPTCDGAGAVRSVEMAALRILRAIEEKAASDKAASVTASAALDVSL 745 Query: 451 ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 + ++ L ++E G ++ V+ + N +Q+++ + Sbjct: 746 YILNQKRDWLNQIEATYGCRITVEGDSDKNGDQYELTV 783 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT +++++ P ETRVA + G +++ E +R+ + GNIY RV+RV P +QAAF++ Sbjct: 1 MTKKMMIDARHPEETRVAVLSNGKVEDFDFESLSRKPLRGNIYLARVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFL 68 G ++ FL Sbjct: 61 YGGNRHGFL 69 >UniRef50_D2LHL1 Ribonuclease, Rne/Rng family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LHL1_RHOVA Length = 1049 Score = 231 bits (588), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 124/338 (36%), Positives = 199/338 (58%), Gaps = 2/338 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E++++ Q +++QVVK+ G+KGA LTT ++L RY V MP AS G+S++I ++R Sbjct: 329 IQEVIKRNQIVLIQVVKEERGSKGAALTTYLSLAGRYTVLMPNTASGGGISRKITVPADR 388 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +RLK++ E +G G IIRTA +AE+ D YL R+W V + + +Y Sbjct: 389 KRLKEIAQELDVPEGMGLIIRTAGASRTKAEIKRDFEYLLRLWENVRDLTLKSTAPCLVY 448 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E L +R +RD + ++D I V + EF +P + Y +PIF + Sbjct: 449 EEGDLIKRSIRDLYNKDIDEILVAGDEAHHEAREFMRMLMPSHAKNVLLYKEPEPIFTKY 508 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 +VE ++ + V LKSGGY++++QTEA+ +D+N+G +++DT TN+EA + Sbjct: 509 EVERQLNQMFSPVVTLKSGGYIVLNQTEALVAIDVNSGRSTREYSIEDTALKTNMEAAEE 568 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 +ARQ+RLR+L G+I+IDFIDM+ + R V L+++L DR + V S GL+EM+R Sbjct: 569 VARQVRLRDLAGLIVIDFIDMDERRNNRSVERKLKESLRHDRARIQVGHISHFGLMEMSR 628 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +R R+ + V CP C G G ++++E+V I+R I Sbjct: 629 QRLRQGVVEVSTVPCPVCQGVGHIRSIESVALMILRSI 666 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV G ++E E +R+ + GNIY +V+R+ P +QAAFV+ Sbjct: 1 MANKMLIDATHPEETRVVVTRGNRVEEFDYESASRKQLRGNIYLAKVARIEPSLQAAFVN 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL ++I P Sbjct: 61 YGGNRHGFLAFAEIHP 76 >UniRef50_A9BIJ0 RNA binding S1 domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIJ0_PETMO Length = 471 Score = 231 bits (588), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 129/426 (30%), Positives = 246/426 (57%), Gaps = 22/426 (5%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 +LV+ E R+A ++ L EI E +G I+ G + +P ++A FV+IGL K Sbjct: 7 MLVSKALEEIRIAILEEDKLSEIFFEDFETDRNIGKIFLGIIENRVPSLEAFFVNIGLGK 66 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 FL D++ ++ Q+ V G ++VQV KD KG +L+ I+ Sbjct: 67 NGFLRYRDVL--------DDPNQYKV---------GDKILVQVRKDGGTRKGPQLSMQIS 109 Query: 125 LPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELA 183 LP +YLV++P ++ +G+S++I E ER RL++V + + I RT +EG+ E E+ Sbjct: 110 LPGKYLVYIPNSNESIGISRKILQEKERIRLRQVAKKILIDNESIIFRTNSEGIDEKEVE 169 Query: 184 SDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL 243 + + +++++ +++R + LY E + +LR+ D++ +I D R + L Sbjct: 170 VELSEMRKMYNSILQRFHSQKNPGVLYEESDFLEYILRERLDSKTKKIITDDRQIFRKLK 229 Query: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 + + E+ K+E G +F + ++ ++++ +K+EL GG + +D+TEA+T + Sbjct: 230 KSLKGF--ELKPKVEFVRG--DVFQIHNIYHQMEEIFTKKIELSGGGTITVDRTEALTAI 285 Query: 304 DINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 D+++ + +N+++T F TN+EA + IARQL+LRN+GG+I++DFIDM + H++ +++ Sbjct: 286 DVDSAGNLEGKNIEETSFITNMEAAKEIARQLKLRNIGGMIVVDFIDMKDSSHKKTIINI 345 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYE 423 L++ KD+ K ++ GF+ +GL+E+ RKRT + ++ + ++CP CHG G + V Sbjct: 346 LKEESKKDKSKVTILGFTNMGLLEIIRKRTTQPLDTNVYSQCPLCHGTGKIIAPSLVHGR 405 Query: 424 IMREIV 429 +++E++ Sbjct: 406 LIKELL 411 >UniRef50_C8WCX7 Ribonuclease, Rne/Rng family n=3 Tax=Zymomonas mobilis RepID=C8WCX7_ZYMMN Length = 912 Score = 230 bits (587), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 138/396 (34%), Positives = 212/396 (53%), Gaps = 2/396 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVG-VSQRIESESER 151 I +++R+ Q L+VQVVK+ G KGA LTT ++L RY V MP S+ G +S++I + ++R Sbjct: 148 IQDVIRRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSNGGGISRKISNLADR 207 Query: 152 ERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +RLK ++AE G I+RTA + E+ D YL R+W ++ E+ Q +Y Sbjct: 208 KRLKSIMAELNLPSSMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIREKTLLSQAPALIY 267 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 G+ L +R +RD E+D I V+ Y A F +P K+ Y P+F F Sbjct: 268 GDSDLVKRAIRDIYSREIDEILVEGDDGYRAARNFMKLLMPSHVRKVRPYADPAPLFQRF 327 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 VE ++ + V+LKSGGYL+I+ TEA+ ++DIN+G N++ T TN+EA Sbjct: 328 GVEAQLNAMYQPIVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAAE 387 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 IARQLRLR++ G+I+IDFIDM + + RRV +++ AL DR + V S+ GL+EM+R Sbjct: 388 IARQLRLRDMAGLIVIDFIDMESSANIRRVEKAMKDALKHDRARIQVGHISSFGLMEMSR 447 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE 450 +R R + CP C G G + T + +R I + + V S A Sbjct: 448 QRLRTGMLEASTVPCPHCQGSGLMLTTPSAGLMALRMIEDEASRGNGSQIHVLTSLDSAI 507 Query: 451 ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + ++ L +E G + + +PL Q V Sbjct: 508 YVLNKKRKELGSIETLYGVTILIDGDPLRGNNQISV 543 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 40/63 (63%) Query: 13 ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASD 72 ETRVA I G ++E E RR + GNIY +V+RV P +QAAFVD G ++ FL S+ Sbjct: 15 ETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFVDYGGNRQGFLAFSE 74 Query: 73 IMP 75 I P Sbjct: 75 IHP 77 >UniRef50_A9RK39 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RK39_PHYPA Length = 727 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 133/399 (33%), Positives = 221/399 (55%), Gaps = 25/399 (6%) Query: 97 VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKK 156 V +G ++VQV K+ +G KG RLT +L R+ V +P + VGVS RI + ER RLK Sbjct: 271 VEEGMPIIVQVKKESMGKKGPRLTAFPSLAGRFWVLIPRGNSVGVSARI-TGPERRRLKL 329 Query: 157 VVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQ-------- 208 + + E G +RT A G + EL D L W ++ME+ + Sbjct: 330 LAQKLQPEDLGITVRTEAIGHEQEELERDLTRLMDAWKEIMEKAAAAAVAVERGEEAAVP 389 Query: 209 --LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPI 266 L+ E+ ++RD ++ R+ VDS +++ ++ + E P + +++ Y+G+ PI Sbjct: 390 VLLHREMGQTLTIIRDLFTEKVSRVVVDSAQSFQEVINYLQEVAPHLMNRVVLYSGKVPI 449 Query: 267 FDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTG-AFVGHR-NLDDTIFNTN 324 FD F+VE+++ + +V+L +GGYL++ +TEA+ ++D+N G +GH + I N N Sbjct: 450 FDKFNVESDLDKFFSERVKLPNGGYLVMQETEALVSIDVNGGTGMLGHSMKQREAILNVN 509 Query: 325 IEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALG 384 + A + IA ++RLR++GGII++DFIDM+N + + V + +A+ +DR K S++ S G Sbjct: 510 LAAAKQIAHEIRLRDIGGIIVVDFIDMDNHEDEKLVYEEMRRAIQRDRSKVSISEISEYG 569 Query: 385 LVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV---HHAYDSD--- 438 L+EMTRKR R S+ + + + C C G G V+ +ET +I R I RV H SD Sbjct: 570 LMEMTRKRVRPSVTYTIHSSCACCKGTGRVEALETTLSKIERAIRRVLADHPDVSSDAST 629 Query: 439 --RFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQI 475 + L+ P++ E LK + + I +G ++V I Sbjct: 630 WPQILLRVEPSMLEFLKSWKKKRI----IQLGHSLRVWI 664 Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 2/76 (2%) Query: 4 ELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 E+L+N + + R+A ++ + E IE + VGNIY GRV ++LPGM FVDIG Sbjct: 73 EILINTSECTMQRMAILENKKVVEFSIEPVNTKVQVGNIYLGRVKQLLPGMSGVFVDIGG 132 Query: 63 DKAAFLH-ASDIMPHT 77 + A L A + P+T Sbjct: 133 PRLALLDIARNQYPYT 148 >UniRef50_B6INB6 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenum SW RepID=B6INB6_RHOCS Length = 1035 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 196/338 (57%), Gaps = 2/338 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVG-VSQRIESESER 151 I E++++ Q L+VQV K+ G KGA LTT ++LP RY V MP G +S++I + ++R Sbjct: 230 IQEVIKRRQILLVQVTKEERGNKGAALTTYLSLPGRYCVLMPNTPRGGGISRKITNPADR 289 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +R+K+++ QG I+RTA + E+ D YL R+W + E + +Y Sbjct: 290 KRMKELLEGLDVPQGMSVILRTAGIERSKPEIKRDLEYLMRLWDSIRELTLQSVAPALIY 349 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E L +R +RD +++D + V+ Y +F +P K++ Y P+F F Sbjct: 350 EEANLIKRSIRDLYASDIDEVIVEGEQGYRTAKDFMRMLMPSHAKKVQPYKDDIPLFHRF 409 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 VE I+ + V+L+SGGY++I+QTEA+ +D+N+G RN+++T TN+EA + Sbjct: 410 QVEGAIETMFDPVVQLRSGGYIVINQTEALVAIDVNSGRSTKERNIEETALRTNLEAAEE 469 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 IARQLRLR+L G+I+IDFIDM + V L++A+ DR + + S GL+E++R Sbjct: 470 IARQLRLRDLAGLIVIDFIDMEEARNNASVEKRLKEAMKADRARIQLGRISPFGLLELSR 529 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +R R S++ + CP C G G V++VE+ ++R I Sbjct: 530 QRLRPSLQEINFERCPHCAGTGLVRSVESAALAVLRAI 567 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M +LV+ T P ETRV + G L+E+ E +R+ + GNIY +V RV P +QAAFV+ Sbjct: 1 MAKRMLVDATHPEETRVVVVSGNRLEELDFEIASRKQLKGNIYLAKVIRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL S+I P Sbjct: 61 YGGNRHGFLAFSEIHP 76 >UniRef50_C0R3W8 Ribonuclease, Rne/Rng family protein n=9 Tax=Wolbachia RepID=C0R3W8_WOLWR Length = 590 Score = 228 bits (581), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 147/507 (28%), Positives = 251/507 (49%), Gaps = 48/507 (9%) Query: 5 LLVNVTPS-ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 L+ N T S E RVA + E E + ++ + GNIY + R+ P +QA F++ G + Sbjct: 10 LIENSTCSNEVRVALSVNNKVVEFEQEFKEKKQLRGNIYVAYIKRIEPSLQAVFIEYGKN 69 Query: 64 KAAFLHASDI------MPHTE-------------------CVAGEEQKQFTVRDISE--- 95 K FL S+I +P E +A ++++E Sbjct: 70 KQGFLSFSEISLDYFNIPEKEKETIFESYSNDDYTEKGNDTIANVSSDSAASKNVNESGS 129 Query: 96 -LVRQ---------------GQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGA-SH 138 VR+ Q ++VQ+ K+ G KGA TT ITL RY VFMP + S Sbjct: 130 GFVREVPLYKKYKLQDVISVNQKVLVQLTKEERGNKGASFTTYITLVGRYCVFMPNSMSK 189 Query: 139 VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVM 197 GVS+RIE + R++LK++++ ++ G I+RT G + E+ D YL +W + Sbjct: 190 GGVSRRIEDANVRKQLKEILSSINLPKRSGLIVRTVGSGKNKKEIEQDYNYLSSLWQSIQ 249 Query: 198 ERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKL 257 + +Y E + R +RDF ++ I V + +EA+ ++ + + + Sbjct: 250 KNAFSVNVPSLIYNEADVIMRSVRDFCSDGIEVI-VSGKEAFEAVRQYANNALKGSKLRY 308 Query: 258 EHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLD 317 Y G PIF + +E++I +VEL SGG LII TEA ++D+N+G G +++ Sbjct: 309 RLYRGYAPIFTYYGIEDQISELYSNRVELPSGGSLIITLTEAFVSIDVNSGKMTGEDSIE 368 Query: 318 DTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSV 377 +T + TN+EA I+RQ+ LR L G+I++DFIDM + R V +++QA D+ K Sbjct: 369 ETAYRTNMEAVPEISRQVNLRGLSGLIVVDFIDMLKYQYCRAVESAIKQAFKDDKAKVQF 428 Query: 378 NGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDS 437 + + GL+ +R+R + +I+ + EC C G G VK+ E + I+R++ + + + Sbjct: 429 SYINDFGLMVFSRQRIKPNIQEINTTECLHCKGTGRVKSNEVIVSSILRDLQHIANKNRN 488 Query: 438 DRFLVYASPAVAEALKGEESHSLAEVE 464 F + A AV + + ++++ +E Sbjct: 489 KSFDLVAHSAVIAHIFNNKRNTVSTIE 515 >UniRef50_D0JBK5 Ribonuclease G n=2 Tax=Blattabacterium RepID=D0JBK5_BLASB Length = 510 Score = 228 bits (580), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 133/423 (31%), Positives = 228/423 (53%), Gaps = 20/423 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M EL++N E +A ++ G L E+H + ++ VG+IY G V ++L G+ AA +DI Sbjct: 1 MNKELIINAEEQEVEIALLEEGQLLELHRDVFNKKFSVGDIYLGIVKKILYGLNAAIIDI 60 Query: 61 GLDKAAFLHASD-----------IMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVK 109 G K AFLH +D I + + + +K+ I +++ GQ ++VQ+ K Sbjct: 61 GHSKGAFLHYNDLGFQINKILELISMNRKFFSNNFEKKENRNSIDKILHPGQRILVQISK 120 Query: 110 DPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFI 169 +P+ KG +LT+ I +P RYL+ +P + + +S++I++ E RL + + + G I Sbjct: 121 EPISNKGPKLTSKICIPGRYLILIPFSEKISISKKIKNAKEESRLLSYIRKIKPHEFGII 180 Query: 170 IRTAAEGVGEAELASDAAYLKRVWTKVMERK-KRPQTRYQLYGELALAQRVLRDFADAEL 228 IRTA+ E L + +L + W K ++ K P ++ E++ +LRD + + Sbjct: 181 IRTASHNKREEVLNEELIFLIKKWKKTLKNLIKLPPPPVRVLSEISKTSCLLRDTFNDDF 240 Query: 229 DRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKS 288 I ++ + + + S PE + +++Y G PIF+ + +E +IQ L R V L++ Sbjct: 241 KSIYCNNNFLCQEIHSYLSLIAPEKINIIKYYKGNIPIFEKYGIEKQIQIFLGRNVPLEN 300 Query: 289 GGYLIIDQTEAMTTVDINTGAFVGHRNLD-------DTIFNTNIEATQAIARQLRLRNLG 341 G YLII+ TEA+ +D+N+G H + D I N+ A IARQLRLR++G Sbjct: 301 GAYLIIEHTEALHVIDVNSG-MNNHMKKNCTESERIDNILKINLLAATEIARQLRLRDMG 359 Query: 342 GIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 GII++DFIDM+ R+++ L++ + DR K + + GLV+ TR R R ++ + Sbjct: 360 GIIVVDFIDMSEPIQRKQLYEHLKEKMKNDRAKHKILPPNKFGLVQFTRHRVRPELKVNI 419 Query: 402 CNE 404 NE Sbjct: 420 NNE 422 >UniRef50_B8EPB2 Ribonuclease, Rne/Rng family n=1 Tax=Methylocella silvestris BL2 RepID=B8EPB2_METSB Length = 1080 Score = 227 bits (579), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 198/361 (54%), Gaps = 10/361 (2%) Query: 76 HTECVAGEEQKQFTVRD--------ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPS 127 H E + G+ ++ VR I E++++ Q L+VQVVK+ G KGA LTT ++L Sbjct: 321 HVEQLGGDAMEEVPVRPQRYRRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSLAG 380 Query: 128 RYLVFMPG-ASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASD 185 RY V MP A G+S++I ++R+RLK + E +G G I+RTA + E+ D Sbjct: 381 RYSVLMPNTARGGGISRKITDSTDRQRLKSIAQELEVPEGMGVILRTAGASRTKPEVKRD 440 Query: 186 AAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEF 245 YL R+W V E + +Y E +L +R +RD + ++D I V Y +F Sbjct: 441 FEYLLRMWETVRETTLKSSAPTLVYEEGSLIKRAIRDLFNKDIDDIVVAGDKGYREARDF 500 Query: 246 TSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDI 305 +P + ++ Y QPIF DVE ++ +V LKSGGY++I+QTEA+ +D+ Sbjct: 501 MRLLMPSHVNSVQPYRDAQPIFSKSDVETQLDAMFLNQVTLKSGGYIVINQTEALVAIDV 560 Query: 306 NTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLE 365 N+G N++DT TN+EA +ARQLRLR+L G+I++DFIDM + R V L+ Sbjct: 561 NSGRSTREHNIEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEEGRNNRAVERRLK 620 Query: 366 QALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIM 425 AL DR + V S GL+EM+R+R R + CP C G G +++ ++ ++ Sbjct: 621 DALKNDRARIQVGRISHFGLLEMSRQRIRTGVLEGSTELCPHCSGSGILRSTASIALHVL 680 Query: 426 R 426 R Sbjct: 681 R 681 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + P ETRV + G ++E E +++ + GNIY +V+RV P +QAAFVD Sbjct: 1 MANKMLIDASHPEETRVVVLRGNRVEEFDFESASKKQLRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL S+I P Sbjct: 61 YGGNRHGFLAFSEIHP 76 >UniRef50_D1I512 Whole genome shotgun sequence of line PN40024, scaffold_57.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1I512_VITVI Length = 934 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 149/472 (31%), Positives = 246/472 (52%), Gaps = 59/472 (12%) Query: 15 RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKA--------- 65 R+A ++ G L E+ +E ++Y G V++++P M AFV+IG+ A Sbjct: 355 RIAVLEDGSLVELLLEPVKSNVQCDSVYLGVVTKLVPHMGGAFVNIGIQFAHDDFEEHEV 414 Query: 66 -------------------------AFL--------HASDIMPHTECVAGEEQKQFTVRD 92 FL H S + P E + ++ +TV + Sbjct: 415 EDDFDVLIKKDLNGSIVDHDSETINNFLPVELEKGFHDSQLPPLLE--MKDSRQAYTVEN 472 Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERE 152 V++G ++VQVVK+ LGTKG LT L SR+ V + + +GVS++I S ER Sbjct: 473 KWAQVQKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTCCNRIGVSKKI-SGVERT 531 Query: 153 RLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQ--- 208 RL+ V+A+ +G G +RT A G EL D L W ++E K Sbjct: 532 RLR-VIAKTLQPKGFGLTVRTVAAGHTLEELQKDLEGLLSTWKNIVEHAKSAALAADEGV 590 Query: 209 -------LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYT 261 L+ + V++D+ + +++ + VDS TY + + E P++ ++E Y Sbjct: 591 EGAIPVILHRAMGQTLSVVQDYFNEKVESMVVDSPRTYHEVTNYLQEIAPDLCDRVELYN 650 Query: 262 GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTG-AFVGH-RNLDDT 319 R P+FD F++E EI L ++V L +GG L+I+QTEA+ ++D+N G +G+ + + Sbjct: 651 KRVPLFDEFNIEEEINNILSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMLGNGTSQEKA 710 Query: 320 IFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNG 379 I + N+ A + IAR+LRLR++GGII++DFIDM ++ ++R V +++A+ +DR V+ Sbjct: 711 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAVERDRSMVKVSE 770 Query: 380 FSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV 431 S GL+E+TRKR R S+ ++ C CHG G V+ +ET +I +EI R+ Sbjct: 771 LSRHGLMEITRKRVRPSVTFMISEPCSCCHGTGRVEALETSFSKIEQEICRL 822 >UniRef50_A8IFL2 Ribonuclease E and G n=6 Tax=Rhizobiales RepID=A8IFL2_AZOC5 Length = 1093 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 127/346 (36%), Positives = 195/346 (56%), Gaps = 2/346 (0%) Query: 85 QKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQ 143 Q++ I E++R+ Q ++VQVVK+ G KGA LTT ++L RY V MP A G+S+ Sbjct: 372 QRRARTYKIQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISR 431 Query: 144 RIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKR 202 +I + +R+RLK+VV E +G G I+RTA + E+ D YL R+W V E Sbjct: 432 KITNAVDRKRLKEVVQELEVPEGMGIILRTAGANRTKVEIKRDFEYLLRLWETVRELTLT 491 Query: 203 PQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTG 262 +Y E +L +R +RD E+D I V ++ +F +P + Y Sbjct: 492 SSAPNLVYEEGSLIKRAIRDLYSKEIDEIHVAGEEGFQEARDFMRMLMPSHAKNVIAYRE 551 Query: 263 RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFN 322 QPIF + VE+++ V+LKSGGY++I+ TEA+ ++D+N+G +++DT Sbjct: 552 PQPIFAKYGVEHQLDAMFSPVVQLKSGGYIVINPTEALVSIDVNSGRATREHHIEDTALK 611 Query: 323 TNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSA 382 TN+EA + IARQLRLR+L G+I+IDFIDM + + R V L+ L DR + V S Sbjct: 612 TNMEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRSVERKLKDCLKNDRARIQVGRISH 671 Query: 383 LGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 GL+EM+R+R R + CP C G G V++ +V +++R + Sbjct: 672 FGLMEMSRQRIRTGVLESSIEVCPVCGGTGHVRSAASVALQLLRAL 717 Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV + G ++E E +R+ + GNIY +V+RV P +QAAF++ Sbjct: 1 MANKMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL S+I P Sbjct: 61 YGGNRHGFLAFSEIHP 76 >UniRef50_Q0G6Z6 Ribonuclease E and G n=2 Tax=Rhizobiales RepID=Q0G6Z6_9RHIZ Length = 1013 Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 124/338 (36%), Positives = 195/338 (57%), Gaps = 2/338 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E++++ Q L+VQVVK+ G KGA LTT ++L RY V MP A G+S++I ++++R Sbjct: 298 IQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNQADR 357 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +RL+ VV E +G G I+RTA +AE+ D YL R+W V + +Y Sbjct: 358 KRLRDVVKELDVPRGMGIILRTAGANRTKAEVKRDYEYLMRLWESVRTLTLQSIAPSLVY 417 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E +L +R +RD + ++D+I V Y +F +P ++ Y PIF Sbjct: 418 EEGSLIKRSIRDLFNKDIDQILVSGEAGYREAKDFMRMLMPSQAKAVQPYRDATPIFTRQ 477 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 +E ++ + L+ V LKSGGY+II+QTEA+ +D+N+G ++++T + TN+EA + Sbjct: 478 GIEAQLDKMLQPHVTLKSGGYIIINQTEALVAIDVNSGRSTREMSIENTAYQTNLEAAEE 537 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 IARQLRLR+L G+I++DFIDM+ + + R V ++ L DR + V S GL+EM+R Sbjct: 538 IARQLRLRDLAGLIVVDFIDMDEKRNNRNVEKKMKDCLKNDRARIQVGKISHFGLMEMSR 597 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +R R S+ CP C G G V+ ++ +R I Sbjct: 598 QRIRASVLESTMRPCPVCEGAGMVRATSSLALHAIRHI 635 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + P ETRV + G ++E E E ++ + GNIY +V+RV P +QAAF++ Sbjct: 1 MANKMLIDSSHPEETRVVVVRGNRVEEFDFESEHKKQLKGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMP 75 G + FL S+I P Sbjct: 61 YGGGRHGFLAFSEIHP 76 >UniRef50_A0L8J1 Ribonuclease E n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J1_MAGSM Length = 984 Score = 224 bits (572), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 133/383 (34%), Positives = 213/383 (55%), Gaps = 8/383 (2%) Query: 107 VVKDPLGTKGARLTTDITLPSRYLVFMP-GASHVGVSQRIESESERERLKKVVAEY-CDE 164 VVK+ GTKGA LTT+I+L RY V +P + G+S++I R+ LK ++ E + Sbjct: 185 VVKEARGTKGASLTTNISLAGRYTVLLPENSGGGGISRKIMDNQARKALKTMLTEMEIPQ 244 Query: 165 QGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFA 224 + IIRTA + E+A D +YL R+W + E+ ++ T ++ E L R +RD Sbjct: 245 EVSLIIRTAGMERTKREIARDMSYLTRLWKTIQEKVEQHNTPTLIHEEGDLIIRTIRDLY 304 Query: 225 DAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKV 284 +++ I +D Y +F +P ++ Y R P+F + VE++I+ ER + Sbjct: 305 STDMEEILIDGGEAYRRGKDFMRLLMPRYVKAVQPYKDRIPLFSRYQVEHQIESMHERTI 364 Query: 285 ELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGII 344 LK+GGYL+I+ TEA+ ++DIN+G +N+++T F TN++A IARQLRLR+LGG+I Sbjct: 365 SLKAGGYLVIEPTEALVSIDINSGRSTKEKNVENTAFKTNMQAVDEIARQLRLRDLGGLI 424 Query: 345 IIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNE 404 +IDFIDM + H V L++AL DR K + S GL+E++R+R + + Sbjct: 425 VIDFIDMEEKKHNLEVEKRLKEALKGDRAKIQLGKISQFGLLELSRQRMKPAFNESNREV 484 Query: 405 CPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRF--LVYASPA-VAEALKGEESHSLA 461 CP C G GT+++VE+ + R I S RF L+Y +PA VA L + + Sbjct: 485 CPRCTGLGTIRSVESTAIRLFRCI---EEDISSGRFSKLIYFAPADVANYLHNRKRFQMV 541 Query: 462 EVEIFVGKQVKVQIEPLYNQEQF 484 ++E ++ ++I+P F Sbjct: 542 QLEQENNLELLIEIDPELQTPHF 564 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT +LV+ T P E RVA + L ++ IE + I GNIY GRV+RV P +QAAFVD Sbjct: 1 MTKRMLVDATHPEEVRVAIVQDQRLIDLDIETCTKAQIKGNIYLGRVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMP 75 + FL +DI P Sbjct: 61 FNDGRQGFLSVNDINP 76 >UniRef50_D2MIS5 Ribonuclease, Rne/Rng family (Fragment) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MIS5_9BACT Length = 327 Score = 224 bits (571), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 122/315 (38%), Positives = 193/315 (61%) Query: 175 EGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVD 234 +GV E +L SD +L +W +++++ L+ +L L RV+RD + R+ +D Sbjct: 8 QGVSEEDLKSDVGFLTAMWQDIVKKQDIYPAPAALHTDLDLTLRVVRDLFTKNVKRLLID 67 Query: 235 SRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLII 294 S+ A+ EF Y+P+ TS++ HY + +FD +E EI RAL RKV LKSGG+++I Sbjct: 68 SKEECAAVKEFVRRYLPDQTSRIVHYDKDESLFDHLGIEMEISRALSRKVWLKSGGHIVI 127 Query: 295 DQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 D TEAMT VD+NTG +VG R+ ++TI N+EA + IA Q++LR +GGIIIIDFIDM Sbjct: 128 DHTEAMTVVDVNTGRYVGKRDQEETILRNNLEAAREIAYQIKLRGIGGIIIIDFIDMERG 187 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 +R +V +L A+ D+ +T ++ S LGL+E++R+R RE + L + C C GRG Sbjct: 188 RNRDKVYQALVDAMGNDKARTRISRISDLGLIEISRERVREDLLRTLSDVCSDCDGRGYT 247 Query: 415 KTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ 474 ++ TV Y+++R+I R+ A +V A P + E L+ E +L +++ Q+ V Sbjct: 248 RSALTVVYDMLRDIRRIGRAAGQQTVVVGAHPHIVEMLQETEPEALEQLQREFHYQIIVN 307 Query: 475 IEPLYNQEQFDVVMM 489 +PL EQ+D+V++ Sbjct: 308 ADPLLPLEQYDLVVL 322 >UniRef50_Q0BVH1 Ribonuclease E n=2 Tax=Acetobacteraceae RepID=Q0BVH1_GRABC Length = 949 Score = 224 bits (571), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 134/401 (33%), Positives = 213/401 (53%), Gaps = 7/401 (1%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVG-VSQRIESESER 151 I E++++ Q L++QVVK+ G KGA L+T I+L RY V MP + G VS++I S ++R Sbjct: 254 IQEVIKRRQILLIQVVKEERGNKGAALSTYISLAGRYCVLMPNSPRGGGVSRKITSATDR 313 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 RLK ++ +G G I+RTA +AE+ D YL R+W + + R ++ Sbjct: 314 RRLKDIIGALEIPRGMGIIVRTAGGNRPKAEIMRDCEYLLRLWDDIRDITLRSSAPALIH 373 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGR-----QP 265 E +L +R +RD + ++ + VD + A + +P K+ + QP Sbjct: 374 EEASLIKRAIRDVYTSTIEEVLVDGEEGWRAARDIMRMLMPSHARKVICWNADKERAGQP 433 Query: 266 IFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNI 325 +F + VE+++ L V LKSGGYL+I+Q EA+ +D+N+G R +++T TN+ Sbjct: 434 LFAHYQVESQLDAILAPNVSLKSGGYLVINQAEALVAIDVNSGRSTKERGIEETALRTNL 493 Query: 326 EATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGL 385 EA +ARQLRLR+L G+I+IDFIDM + H V L++AL DR + V S+ GL Sbjct: 494 EAADEVARQLRLRDLAGLIVIDFIDMESRKHNGMVERRLKEALKNDRARIQVGQISSFGL 553 Query: 386 VEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYAS 445 +EM+R+R R S+ CP C+G G V+T E ++R I +V+A+ Sbjct: 554 LEMSRQRLRPSLTETSMITCPHCNGLGLVRTTEGASVHVLRAIEEEGARRRYAEIMVHAA 613 Query: 446 PAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 VA + LA +E G +V + ++ Q + Sbjct: 614 ADVAFYILNNRRDFLATLESRFGMKVLFSADTQFSGSQLRI 654 Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT ++L++ + +E TRV +DG L++ +E +R+ I GNIY +V RV P +QAAFV+ Sbjct: 49 MTKKMLIDASHAEETRVVVMDGNRLEDFDVEAASRKQIKGNIYLAKVVRVEPSLQAAFVE 108 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL S+I P Sbjct: 109 YGGNRHGFLAFSEIHP 124 >UniRef50_P51211 Ribonuclease E homolog n=2 Tax=Porphyra RepID=RNE_PORPU Length = 511 Score = 224 bits (571), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 125/376 (33%), Positives = 206/376 (54%), Gaps = 12/376 (3%) Query: 38 VGNIYKGRVSRVLPGMQAAFVDIGLDK-AAFLHASDIMPHTECVAGEEQKQFTVRDISEL 96 V +IY G V ++ G+ AAFVD+G ++ + F+H SD G +K++ + +I+ + Sbjct: 34 VSDIYLGTVDKIFSGINAAFVDLGKNEYSGFIHISD--------TGPLKKKYYINNITNI 85 Query: 97 VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKK 156 + Q ++VQ++K+P KG RLT +ITL RY+V MP + + +S++I E ER LK Sbjct: 86 LTIRQKILVQIIKEPTLNKGPRLTANITLSGRYIVLMPFSQAICISRKIYDEDERHYLKA 145 Query: 157 VVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALA 216 + G + R +A G+ E + S+ LK W + + LY + + Sbjct: 146 LAILIKPPTMGLLFRPSAIGIDEEIILSELTNLKEQWYFIQKSAINNCAPVLLYKDEDIV 205 Query: 217 QRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS---KLEHYTGRQPIFDLFDVE 273 ++V+RDF D I +DS L + L + + + +S L+ Y+ + I D F + Sbjct: 206 KKVIRDFYDNNTKNIVIDSNLGLKQLNYYINTWQCNFSSTIPSLQLYSSNKCILDTFRIN 265 Query: 274 NEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIAR 333 I RAL KV+L GGY+ I+ EA T +D+N+G+F + +T+ TN A IA Sbjct: 266 QAISRALIPKVDLILGGYMFIETLEAFTIIDVNSGSFNNSTSARETVLKTNCSAATEIAY 325 Query: 334 QLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRT 393 QL++RN+ G+IIIDFIDM ++ + ++L ++ LS D K + S LGLVE+TR+R Sbjct: 326 QLKIRNIAGVIIIDFIDMESQRDQLQLLEHFDKELSLDDAKPQIVQLSELGLVELTRRRK 385 Query: 394 RESIEHVLCNECPTCH 409 +S+ ++ N+ H Sbjct: 386 GKSLYELVSNDSNYFH 401 >UniRef50_B0UJB2 Ribonuclease, Rne/Rng family n=4 Tax=Methylobacterium RepID=B0UJB2_METS4 Length = 1092 Score = 224 bits (570), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 189/338 (55%), Gaps = 2/338 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVG-VSQRIESESER 151 I E++++ Q ++VQVVK+ G KGA LTT ++L RY V MP G +S++I S ++R Sbjct: 407 IQEVIKRRQVILVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSAADR 466 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +RLK++ A+ G G I+RTA + E+ D YL R+W V E +Y Sbjct: 467 KRLKEIAADLEVPDGMGVILRTAGASRTKPEIKRDFEYLMRLWESVRELTLSSSAPALVY 526 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E +L +R +RD + ++D + V Y +F +P + ++ Y P+F + Sbjct: 527 EEGSLIKRAIRDLYNKDIDEVLVAGDDAYREAKDFMRMLMPSQSKVVKPYRDPTPLFARY 586 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 VE ++ V L+SGGYL+I+ TEA+ ++D+N+G +++DT TN+EA + Sbjct: 587 GVEQQLDAMFSNHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEAAEE 646 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 +ARQLRLR+L G+I+IDFIDM + + R V L + L DR + V S GL+EM+R Sbjct: 647 VARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKLNECLKDDRARIQVGRISPFGLLEMSR 706 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +R R + CP C G G V+ +V +I+R I Sbjct: 707 QRIRTGVLESSSVPCPHCGGSGFVRATSSVALQILRAI 744 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + P ETRV + G ++E E RR + GNIY +V+RV P +QAAFV+ Sbjct: 1 MANKMLIDASHPEETRVVTVKGSKVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL S+I P Sbjct: 61 YGGNRHGFLAFSEIHP 76 >UniRef50_Q2G5W8 Ribonuclease E n=8 Tax=cellular organisms RepID=Q2G5W8_NOVAD Length = 935 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 211/383 (55%), Gaps = 2/383 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVG-VSQRIESESER 151 I +++++ Q L+VQVVK+ G KGA LTT ++L RY V MP +SH G +S++I S S+R Sbjct: 209 IQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNSSHGGGISRKINSASDR 268 Query: 152 ERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +RLK +++E I+RTA + E+ D YL R+W ++ ER + ++ Sbjct: 269 KRLKTIISELELPRSMSCIVRTAGLQRTKPEIKRDFDYLARLWDEIRERTMKSVAPALIH 328 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 + L +R +RD + +++ + V+ Y A +F +P +++ Y P+F + Sbjct: 329 SDSDLIKRAIRDIYNRDIEEVVVEGEHGYRAAKDFMKLLMPSHAKRVKAYADPVPLFQRY 388 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 E+++ + V+LKSGGYL+I+ TEA+ ++DIN+G ++ T TN+EA + Sbjct: 389 GAEDQLTAMYDPVVQLKSGGYLVINPTEALVSIDINSGRSTKEHGIEQTAVATNLEAARE 448 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 IARQLRLR++ G+++IDFIDM + R+V +++ AL DR + V S GL+EM+R Sbjct: 449 IARQLRLRDMAGLVVIDFIDMEYGSNIRKVEKAMKDALKNDRARIQVGRISGFGLMEMSR 508 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE 450 +R R + CP C G G V+T + +R I + +YAS A Sbjct: 509 QRLRTGVLEATTRACPHCDGSGLVRTASSAGLSALRLIEDEAAKGKGNVVTLYASQEAAV 568 Query: 451 ALKGEESHSLAEVEIFVGKQVKV 473 + + LAE+E G V+V Sbjct: 569 YVLNAKRADLAEIEERYGVTVEV 591 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT +L++ ETRVA + G ++E E + I GNIY +V+RV P +QAAFVD Sbjct: 1 MTTRMLIDARHQEETRVAVLKGNRIEEFDFESADHKQIKGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL S+I P Sbjct: 61 FGGNRHGFLAFSEIHP 76 >UniRef50_Q3AF57 Ribonuclease, Rne/Rng family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AF57_CARHZ Length = 392 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 143/424 (33%), Positives = 226/424 (53%), Gaps = 44/424 (10%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 MT L+ + P A + G + +R + + +IY G+V +V+PG+QAAFV++ Sbjct: 1 MTKTLVFHRQPEYDLAAVMVDGSPFSLFAKRRDEQTQINDIYLGKVEKVVPGLQAAFVNL 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL K +L +I V+ G ++V+VVK+P KGA+L+ Sbjct: 61 GLAKNGYLPLDEIN----------------------VKPGDVVLVRVVKNPTAQKGAKLS 98 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T I+LP R LV+ P G+S+++ +E +RE +V+ E + GGFI+RT A GE Sbjct: 99 TVISLPGRNLVYFPQKEMKGISRKL-TEDKREYYHRVL-ENLNLPGGFIVRTLA---GEE 153 Query: 181 E-LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 E L +A L W ++ER K Q LY E L LR+ D + + VD + Sbjct: 154 EDLLQEAKRLYEEWQGILERSKTAQAPALLYKEDDLFTWCLRELLDKDFTALYVDD---F 210 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQ--RALER----KVELKSGGYLI 293 E LLE ++ L PI+ F+V E R +E+ +V LK+GG L+ Sbjct: 211 E-LLEIGQKFRERFRVLL------PPIYKSFNVMEEFNLIRTMEKLTRERVWLKNGGILV 263 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 I++TEA+T +D+N+G F G ++L +T F N+EA + IA+Q+RLRN+GGII++DFI + Sbjct: 264 IEKTEALTAIDVNSGKFTGKKDLKETAFKINLEAAREIAKQIRLRNIGGIIVVDFISLLE 323 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGT 413 E+ +L +E+ +D+ K + G + GLVE+ R++ SI + +EC C G G Sbjct: 324 EERWEEILRVMEEEFLRDKAKVKITGKTPSGLVEIARQKIGLSIGELFTHECSVCQGTGR 383 Query: 414 VKTV 417 + + Sbjct: 384 ITDI 387 >UniRef50_C6ADR1 Ribonuclease E n=5 Tax=Rhizobiales RepID=C6ADR1_BARGA Length = 876 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 205/377 (54%), Gaps = 5/377 (1%) Query: 54 QAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLG 113 +A DI D+ + A DI ++ +Q+ I E++++ Q L+VQV+K+ G Sbjct: 149 EALNADISYDEIEMVGAEDIREELPIYQRKQGRQYK---IQEVIKRRQILLVQVIKEERG 205 Query: 114 TKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIR 171 KGA LTT ++L RY V MP A G+S++I + +R+RLK++V E +G G I+R Sbjct: 206 NKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNVQDRKRLKEIVKELAVPKGMGVILR 265 Query: 172 TAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRI 231 TA +AE+ D YL R+W + ++ E L +R +RD + + I Sbjct: 266 TAGANRTKAEIKRDYEYLMRLWDTIRTLTLESTAPCLVHEESNLIKRSIRDLYNKNISEI 325 Query: 232 RVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGY 291 V Y +F +P ++ Y PIF ++E ++ + L+ +V LKSGGY Sbjct: 326 LVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPTPIFARNNIEIQLDKMLQPQVSLKSGGY 385 Query: 292 LIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDM 351 L+I+QTEA+ +D+N+G +++ T TN+EA + +ARQLRLR+L G+I+IDFIDM Sbjct: 386 LVINQTEALVAIDVNSGRSTKEFSVEKTALQTNLEAAEEVARQLRLRDLAGLIVIDFIDM 445 Query: 352 NNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGR 411 E + + V L+ L DR + V S GL+EM+R+R R S+ CP C G Sbjct: 446 LEERNVKLVEKKLKDCLKNDRARIQVGHISHFGLLEMSRQRIRISVLESTTQPCPHCAGT 505 Query: 412 GTVKTVETVCYEIMREI 428 G +++ ++ +MR I Sbjct: 506 GNIRSESSIALHVMRSI 522 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L++ + P ETRV + G ++E+ E E R+ + GNIY R++RV P +QAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHRKQLKGNIYLARITRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL S+I P Sbjct: 61 YGGNRHGFLTFSEIHP 76 >UniRef50_B8GWM7 Ribonuclease E n=6 Tax=Caulobacteraceae RepID=B8GWM7_CAUCN Length = 898 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 126/338 (37%), Positives = 190/338 (56%), Gaps = 2/338 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E++R+ Q ++VQVVK+ G KGA LTT ++L RY V MP A G+S++I + ++R Sbjct: 147 IQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITAVTDR 206 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +RLK VV QG G I+RTA +AE+ D YL R+W + E +Y Sbjct: 207 KRLKSVVQSLDVPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWENIRENTLHSIAPALIY 266 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E L +R +RD D +LD I V+ Y+ +F +P K+ +Y P+F Sbjct: 267 EEEDLVKRAIRDMYDKDLDGIWVEGDAGYKEARDFMRMLMPSQAKKVFNYRDPTPLFVKN 326 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 +E+ + + V L+SGGYL+I+QTEA+ +D+N+G RN++ T TN EA + Sbjct: 327 KIEDHLAQIYSPVVPLRSGGYLVINQTEALVAIDVNSGKATRERNIEATALKTNCEAAEE 386 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 ARQLRLR+L G+I+IDFIDM+ + R V L+ AL DR + + S GL+E++R Sbjct: 387 AARQLRLRDLAGLIVIDFIDMDEAKNNRTVEKVLKDALKDDRARIQMGKISGFGLMEISR 446 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +R R + + C C G G V++VE+ +R + Sbjct: 447 QRRRTGVLEGTTHVCEHCEGTGRVRSVESSALAALRAV 484 Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L++ +E TRV +DG ++E E + R+ + GNIY +V+RV P +QAAF++ Sbjct: 1 MSKKMLIDAAHAEETRVVVVDGTRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL ++I P Sbjct: 61 YGGNRHGFLAFNEIHP 76 >UniRef50_A8GXM7 Ribonuclease E n=15 Tax=cellular organisms RepID=A8GXM7_RICB8 Length = 693 Score = 221 bits (562), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 115/347 (33%), Positives = 200/347 (57%), Gaps = 7/347 (2%) Query: 86 KQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQR 144 KQ+ V+D+ +R+ Q L+VQV K+ G K A TT ++L +Y V MP A+ G+S++ Sbjct: 165 KQYKVQDV---IRKNQILLVQVTKEERGNKCAAFTTYVSLAGKYCVLMPNKAAQNGISRK 221 Query: 145 IESESERERLKKVVAEYCD---EQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKK 201 I + ER+RLK ++ + + IIRTA G +L D +YL R+W K+ + Sbjct: 222 ISNGDERKRLKNILNKVVNGDKSPYSVIIRTAGRGCSTLDLKKDYSYLSRLWNKIRKSTV 281 Query: 202 RPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYT 261 + ++ E ++ ++ +RD D + + + + YE +F + +P +KL+ + Sbjct: 282 KFPAPCFIHEEDSIIRKTIRDMCDHNVKEVIIYGQEAYEDAAKFMQDLLPSEMTKLKEHK 341 Query: 262 GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIF 321 + PIF F VE ++ + + V L SGGY++I+ TEA+ ++D+N+G +N+++T Sbjct: 342 SKTPIFTKFQVEEQLIKLYQPVVTLPSGGYIVINPTEALISIDVNSGRSTSEKNIEETAL 401 Query: 322 NTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFS 381 TN+EA + IARQ++LR+L G+I++DFIDM+ +R+ + S ++ LS+DR + S Sbjct: 402 KTNLEAAKEIARQVKLRDLSGLIVVDFIDMDETKNRKIIERSFKEFLSRDRARIQTGNIS 461 Query: 382 ALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 GL+E +R+R R S + C C+G+G V+ E+ I+R I Sbjct: 462 QFGLLEFSRQRLRFSFLETNSSICSHCNGKGVVRADESNAMLILRTI 508 Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 3/99 (3%) Query: 1 MTAELLVNVTPS-ETRVAYI-DGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFV 58 M +++++ S ETRV + +++I + ++ GNIY +V+R+ P +QA F+ Sbjct: 1 MNKKIIIDANFSNETRVVLLGQSNNIEDIEFQTTRKQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELV 97 + G+DK+ FL S+I P+ + E K F + E+V Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPASE-KNFPINAFPEIV 98 >UniRef50_Q3J4J9 RNAse E n=6 Tax=Rhodobacteraceae RepID=Q3J4J9_RHOS4 Length = 936 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 136/430 (31%), Positives = 224/430 (52%), Gaps = 11/430 (2%) Query: 66 AFLHASDIMPHTECVAGEE--------QKQFTVR-DISELVRQGQDLMVQVVKDPLGTKG 116 A HASD E VA E+ +K + R I E+++ Q ++VQVVK+ G KG Sbjct: 175 AMDHASDGDDEIESVADEDVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKG 234 Query: 117 ARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAA 174 A LTT ++L RY V MP A G+S++I ++R++LK++ +E E G IIRTA Sbjct: 235 AALTTYLSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAG 294 Query: 175 EGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVD 234 + E+ D YL R+W ++ + + +Y E L +R +RD + E++ + V+ Sbjct: 295 AKRTKQEIRRDYEYLLRLWEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVE 354 Query: 235 SRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLII 294 Y +F +P ++ Y P+F + VE+ + V+LKSGGY++I Sbjct: 355 GETGYRTAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVI 414 Query: 295 DQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 TEA+ +D+N+G ++++T TN+EA + +ARQLRLR+L G+I+IDFIDM Sbjct: 415 GVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEER 474 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 + V L+ L DR + V S GL+EM+R+R R + C CHG G + Sbjct: 475 KNNAAVEKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLI 534 Query: 415 KTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ 474 ++ +++ +++R++ S L+ A AV L + +A +E G V+V+ Sbjct: 535 RSDDSLALQVLRQLEEEGTRKRSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRVE 594 Query: 475 IEPLYNQEQF 484 +P + + Sbjct: 595 ADPSLSSPDY 604 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV +DG ++E E +R + GNIY +V+RV P +QAAFVD Sbjct: 1 MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL ++I P Sbjct: 61 YGGNRHGFLAFAEIHP 76 >UniRef50_Q92QJ4 Probable ribonuclease E n=1 Tax=Sinorhizobium meliloti RepID=Q92QJ4_RHIME Length = 924 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/396 (33%), Positives = 211/396 (53%), Gaps = 2/396 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A G+S++I + +R Sbjct: 243 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNLQDR 302 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +RLK++ QG G I+RTA + E+ D YL R+W V +Y Sbjct: 303 KRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNSTAPCLVY 362 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E +L +R +RD + ++ I V Y+ F +P ++ Y PIF Sbjct: 363 EEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQPYRDVHPIFSRS 422 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 +E ++ R L+ +V LKSGGY+II+QTEA+ ++D+N+G +++DT TN+EA + Sbjct: 423 GIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTNLEAAEE 482 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 +ARQLRLR+L G+I+IDFIDM + + R V L+ L DR + V S GL+EM+R Sbjct: 483 VARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMSR 542 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE 450 +R R S+ CP C+G G +++ +V ++R I + V +P +A Sbjct: 543 QRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISVRTTPDIAL 602 Query: 451 ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 L ++ S+ + E G + ++ + + F + Sbjct: 603 YLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAI 638 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + SE TRV + G ++E E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL ++I P Sbjct: 61 YGGNRHGFLAFAEIHP 76 >UniRef50_A9KMH0 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMH0_CLOPH Length = 404 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 132/399 (33%), Positives = 219/399 (54%), Gaps = 12/399 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ +L+V A +G + +++++RE +GNIY G+V ++ + AAFV+I Sbjct: 1 MSGKLIVTKMDDNIVTALYEGNQMIQVNVDREEEVSSLGNIYIGKVKNIVKNINAAFVEI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 K +L +D++ FT S+ V G +L+VQV+K+ + TK +T Sbjct: 61 SDRKMCYLPLADVVNPI----------FTHAKSSDKVNIGDELVVQVIKEDIKTKAPVVT 110 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T I +Y+V M G +G+S +I SE +R+RL+ +V+ + EQ GF++RT A + Sbjct: 111 TSIAFTGKYVVLMHGTKTIGISSKIGSEQKRKRLRSLVSPFLGEQYGFVLRTNAVEAEDN 170 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 + + LK+ + +++ LY L +RD +L+ I D Y+ Sbjct: 171 LIVEEIEQLKKQYDRILTYGIYRNRFSLLYKTLQPFLCAIRDGFAKDLEAIITDDLSLYD 230 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + E+ +E+ E KL Y + + L+ +E ++ RAL KV L GG L+I TEA Sbjct: 231 EIKEYLTEHQREDIGKLTFYQDKLLALSKLYSIETKLSRALREKVWLPCGGSLVIQPTEA 290 Query: 300 MTTVDINTGAFVGHR-NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 +T +D+NTG V + N+ +T N+EA + IA Q+ LRNL GIII+DFIDM +ED + Sbjct: 291 LTVIDVNTGKAVSKKKNVQETFLKVNLEAAEEIAAQICLRNLSGIIIVDFIDMISEDAKT 350 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESI 397 ++L ++ L KD +KT++ +AL LVE+TRK+ R+ + Sbjct: 351 QLLRVFDEYLRKDPIKTTLVDMTALNLVEITRKKVRKPL 389 >UniRef50_A7HJB9 Ribonuclease, Rne/Rng family n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HJB9_FERNB Length = 463 Score = 218 bits (554), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 141/417 (33%), Positives = 247/417 (59%), Gaps = 20/417 (4%) Query: 13 ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASD 72 + + A I+ GIL EI I + I GNIY G++ + +P ++AAFV + D+ AFL D Sbjct: 13 KAQAALIENGILAEIFISDDDEESIAGNIYIGKIEKFIPALEAAFVKLPDDENAFLRIKD 72 Query: 73 IMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVF 132 I + + IS+L ++ Q ++VQ+ K+ TKG ++TT+I +P RY+V+ Sbjct: 73 I----------KNEYLNFFGISKL-QECQKILVQIKKEGGNTKGPQVTTNIGIPGRYIVY 121 Query: 133 MPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKR 191 MP + +G+S++I +E++R+ L++V + + GFI+RT+ E + +A L + Sbjct: 122 MPFSKSIGISRKITNENDRKHLREVGEKLKSKYNCGFILRTSCVESKEEYIEKEAEELHK 181 Query: 192 VWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIP 251 W +++ KR + ++ E + V+R+F E++++ +S + L + ++ P Sbjct: 182 KWEEIVNTFKRSRKTKLIHKESDSDEFVVREFLRKEVEQVITNS----QKLKVISKDFKP 237 Query: 252 EMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFV 311 + KL P F+ ++V +IQ +++R EL SGG ++ID+TEA+T +D+N+G + Sbjct: 238 NIPVKL---IESDP-FEEYNVYKQIQNSMKRIHELPSGGEIVIDKTEALTIIDVNSGHYT 293 Query: 312 GHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKD 371 + ++ NIEA + I R +RLRN+GGIIIIDFIDM NE++R +L++++ KD Sbjct: 294 SSESHEELSKKINIEAAKEICRLIRLRNIGGIIIIDFIDMKNEENRLEILNAIKSETLKD 353 Query: 372 RVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 + K V GF+ LGL+EM RKRT +S++ + CP C+G G V + + V +++E+ Sbjct: 354 KNKIEVYGFTQLGLLEMARKRTSKSLDEKMTALCPVCNGTGHVMSPKFVIERLLKEV 410 >UniRef50_Q0C4E1 Ribonuclease, Rne/Rng family n=2 Tax=Hyphomonadaceae RepID=Q0C4E1_HYPNA Length = 909 Score = 217 bits (553), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 114/338 (33%), Positives = 190/338 (56%), Gaps = 2/338 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVG-VSQRIESESER 151 I E++R+ Q ++VQVVK+ G KGA LTT ++L RY V MP G +S++I + ++R Sbjct: 181 IQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTPRGGGISRKIVNSADR 240 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +RLK +V+E +G G I+RTA + E+ D YL ++W +++E+ + + Sbjct: 241 KRLKSIVSELDVPEGQGLIVRTAGAKRTKIEIKRDYDYLSKLWEQIVEKTLSSEAPALIN 300 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E L R +RD D E++ + V Y + +P K++ + P++ Sbjct: 301 AEGGLVHRAMRDMFDKEIEEVWVQGDEAYREAKDLAKIIMPSQAKKVQQWREEDPLYVAE 360 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 VEN++ V+LKSGGYL+I+QTEA+ +D+N+G RN++ T TN+EA + Sbjct: 361 AVENQLDSIYSPVVQLKSGGYLVINQTEALVAIDVNSGKSTRERNIEQTAVRTNLEAAEE 420 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 RQ+RLR+L G+I+IDFIDM + R V L++ L DR + S GL+E++R Sbjct: 421 ACRQMRLRDLAGLIVIDFIDMEENKNNRAVEKRLKECLKVDRARVQHGRISQFGLMEISR 480 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +R R+ + + C C+G G +++ + +++R I Sbjct: 481 QRRRQGVLQATSDPCSACNGTGRRRSIPSAALQLIRAI 518 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ +L++ P ETRVA ++ G + + E + GNIY +V+RV P +QAAFV+ Sbjct: 1 MSRLMLIDAAHPEETRVAIVNNGQVDDFDFEATGNEQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL S+I P Sbjct: 61 YGGNRHGFLAFSEIHP 76 >UniRef50_B6INE9 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenum SW RepID=B6INE9_RHOCS Length = 392 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/401 (33%), Positives = 213/401 (53%), Gaps = 13/401 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ L ++ + +R A + G L ++H++R R +G++ GRV RV+ G+ AAFV+I Sbjct: 1 MSRALHIDRSGPLSRAALLRDGELSDLHLDRLDRPAWLGSLRLGRVVRVVAGLDAAFVEI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G L+A+D+ P +G ++++ I +L+R GQ ++VQV D G KGA LT Sbjct: 61 GDRLPGLLNAADVRP---LPSGRDRREAR---IGQLLRTGQAVLVQVKADAHGDKGAVLT 114 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 D+TLP R+LV P S + +S+R+ ER R++ + + +GG+I+R A Sbjct: 115 MDVTLPGRFLVHAPLGSGLHLSRRLGRGPERARVQATLRDLLPAEGGWIVRADAASADPG 174 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 LA +A L W + L R L +F A D IRV+ Sbjct: 175 LLALEAESLWADWRQAARAADGAGAPALLLPAPTAPVRALLEFGGAGFDAIRVEGAEALA 234 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + + P++ + + R +F+ D+ I ER+V L GG L+I++TEA+ Sbjct: 235 EVRRWCRDRAPDLEPLVRPHVARLSLFEEGDLAGAIAALAERRVPLAQGGSLVIERTEAL 294 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+N G R +TN+EA + IARQLRLRN+GGI+++DF++M R + Sbjct: 295 TVIDVNGG----ERG---NPLSTNLEAAREIARQLRLRNVGGIVVVDFVNMAAAADREHL 347 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 L +L QA+S+D T V G S LGL+EMTR R + +L Sbjct: 348 LLTLTQAVSEDPAGTHVYGLSKLGLMEMTRSRRGPPVADLL 388 >UniRef50_Q0FAK9 Ribonuclease, Rne/Rng family protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FAK9_9RHOB Length = 870 Score = 216 bits (549), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 117/338 (34%), Positives = 190/338 (56%), Gaps = 2/338 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E+++ Q L++QVVK+ G KGA LTT ++L RY V MP A G+S++I + +R Sbjct: 234 IQEVIKVRQILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNVQDR 293 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +++K++ +E +G G I+RTA ++ D YL R WT++ + Q+Y Sbjct: 294 KKIKEITSELDVPKGAGLIVRTAGAKRNRDDILRDYEYLMRQWTQIRDITLESIAPTQIY 353 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E + +R +RD + ++D I V+ +EA + + +P +++ Y + P++ + Sbjct: 354 AEGDIIKRSIRDLYNNDIDEIIVEGERGFEAAKAYMTMLMPSHVKRVKQYKNKMPLYARY 413 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 VEN + V+LKSGGY++I TEA+ VD+N+G +++ T TN+EA Sbjct: 414 QVENYLGGMFNPTVQLKSGGYIVIGVTEALVAVDVNSGKATKESSIEKTALKTNLEAADE 473 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 +ARQLRLR+L G+I+IDFIDM + V ++ L DR + V S GL+EM+R Sbjct: 474 VARQLRLRDLAGLIVIDFIDMEERRNNIAVEKRMKDKLKSDRARIQVGRISGFGLMEMSR 533 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +R R + ECP C G G V++ ++ I+REI Sbjct: 534 QRLRPGMLEATTKECPHCLGTGLVRSDDSQALSILREI 571 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T ETRV ++G + E E +R + GNIY +V+RV P +QAAFVD Sbjct: 1 MPKKMLIDATHAEETRVVVVEGNKVDEFDFESLNKRQLSGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL ++I P Sbjct: 61 YGGNRHGFLSFAEIHP 76 >UniRef50_Q7CZH1 Ribonuclease E n=7 Tax=Alphaproteobacteria RepID=Q7CZH1_AGRT5 Length = 977 Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 124/351 (35%), Positives = 194/351 (55%), Gaps = 5/351 (1%) Query: 80 VAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASH 138 VA + +KQ+ I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A Sbjct: 259 VARKPRKQYR---IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARG 315 Query: 139 VGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVM 197 G+S++I ++R+RLK++ + QG G I+RTA E+ D YL R+W V Sbjct: 316 GGISRKITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVR 375 Query: 198 ERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKL 257 +Y E +L +R +RD + ++ I V Y +F +P + Sbjct: 376 TLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAKVV 435 Query: 258 EHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLD 317 + Y PIF +E ++ R L+ +V LKSGGYLII+QTEA+ +D+N+G +++ Sbjct: 436 QPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIE 495 Query: 318 DTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSV 377 +T TN+EA + +ARQLRLR+L G+++IDFIDM + + R V L+ L DR + V Sbjct: 496 ETALTTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQV 555 Query: 378 NGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 S GL+EM+R+R R S+ C C G G V++ ++ ++R + Sbjct: 556 GRISHFGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGV 606 Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + ETRV + G ++E E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL ++I P Sbjct: 61 YGGNRHGFLAFAEIHP 76 >UniRef50_B4RCR6 Ribonuclease, Rne/Rng family protein n=4 Tax=Alphaproteobacteria RepID=B4RCR6_PHEZH Length = 896 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 120/338 (35%), Positives = 189/338 (55%), Gaps = 2/338 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E++R+ Q ++VQVVK+ G KGA LTT ++L RY V MP A G+S++I + ++R Sbjct: 145 IQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITTATDR 204 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +RLK +V G G I+RTA +AE+ D YL R+W + E +Y Sbjct: 205 KRLKSIVQSLDVPAGMGLIVRTAGAKRTKAEIKRDYDYLLRLWENIRETTLHSIAPALIY 264 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E L +R +RD D ++D + V+ ++ +F +P K++ Y P++ Sbjct: 265 EEEDLVKRAIRDLYDKDVDNVWVEGEAGFKEARDFMRMLMPSQAKKVQLYREPTPLYVKH 324 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 VE+ + + V L+SGGYL+I+QTEA+ +D+N+G RN++ T TN+EA + Sbjct: 325 KVEDHLSQIYSPVVPLRSGGYLVINQTEALVAIDVNSGRATRERNIEATALKTNMEAAEE 384 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 ARQLRLR+L G+I+IDFIDM+ + R V L+ L DR + + S GL+E++R Sbjct: 385 AARQLRLRDLAGLIVIDFIDMDEAKNNRAVEKKLKDCLKDDRARVQMGKISPFGLMEISR 444 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +R R + + C C G G V++VE+ +R + Sbjct: 445 QRRRTGVLEGTTHVCEHCGGTGRVRSVESSALAALRAL 482 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ +L++ +E TRV +DG ++E E + R+ + GNIY +V+RV P +QAAFV+ Sbjct: 1 MSKTMLIDAAHAEETRVVVVDGNRVEEFDFESQNRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL ++I P Sbjct: 61 YGGNRHGFLAFNEIHP 76 >UniRef50_B5ZYQ5 Ribonuclease, Rne/Rng family n=7 Tax=Alphaproteobacteria RepID=B5ZYQ5_RHILW Length = 965 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 123/338 (36%), Positives = 190/338 (56%), Gaps = 2/338 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A G+S++I + ++R Sbjct: 267 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNPADR 326 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +RLK++ QG G I+RTA + E+ D YL R+W V +Y Sbjct: 327 KRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLASTAPCLVY 386 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E +L +R +RD + ++ I V Y +F +P ++ Y PIF Sbjct: 387 EEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRS 446 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 +E ++ R L+ +V L+SGGYLI++QTEA+ ++D+N+G +++DT TN+EA + Sbjct: 447 GIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRSTREHSIEDTALQTNLEAAEE 506 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 IARQLRLR+L G+I+IDFIDM + + R V L++ L DR + V S GL+EM+R Sbjct: 507 IARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKNDRARIQVGRISHFGLLEMSR 566 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +R R S+ C C G G V++ +V ++R I Sbjct: 567 QRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGI 604 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + ETRV + G ++E E + ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL ++I P Sbjct: 61 YGGNRHGFLAFAEIHP 76 >UniRef50_Q97JL8 Ribonucleases G/E family protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JL8_CLOAB Length = 481 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 128/419 (30%), Positives = 223/419 (53%), Gaps = 32/419 (7%) Query: 15 RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIM 74 +VA +D G +E IE E G IYKG V ++P ++ AFVDIG K +L+ Sbjct: 14 KVAVLDNGEFKECFIEDEKEEIYSGAIYKGVVKNIVPAIKCAFVDIGNGKNGYLYMDSKF 73 Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 + +++G +++V++VK+ +G+KG +++ IT+P RY V + Sbjct: 74 NNVN------------------IKKGDEMLVEIVKESIGSKGPKVSNAITIPGRYSVIIT 115 Query: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194 + + +S++I + LK+ V + E G +IRT A+ V ++ ++ L + Sbjct: 116 LNTDINISKKISDSKYIKMLKENVKK--PEDVGVMIRTNAQNVSLEDINNEIENLYETYV 173 Query: 195 KVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYI---P 251 + ++ K +Y +R++RD D + V+ + ++ + YI Sbjct: 174 GIRKKAKYSNKVGIVYNAGGTIERIMRDNEDVADLTVVVNDKKDFDNI----QNYILTKK 229 Query: 252 EMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFV 311 +M L+ + + + + E EI + ++RKV LK GGYLIID TEAM +D+N+G + Sbjct: 230 DMKCNLKLHDSNISLMEYYGFEREIVKLIDRKVMLKCGGYLIIDNTEAMHVIDVNSGKNI 289 Query: 312 GHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKD 371 + NL T F TN+EA + ARQ+ LRNL GII+IDFID+ +E+ + ++++ L+Q KD Sbjct: 290 KNSNLARTAFLTNMEAAKEAARQIILRNLSGIIVIDFIDITDEEAKSKIVNVLKQGFLKD 349 Query: 372 RVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVR 430 + KT V F+ L +V++ R+R +SI L +C +C G G + +E M+ ++R Sbjct: 350 KNKTIVYPFTELNIVQIARRRRGKSIYDYLEEKCDSCIGSG-----RKLNFEYMKNLMR 403 >UniRef50_C3WHH5 Ribonuclease G n=4 Tax=Fusobacterium RepID=C3WHH5_9FUSO Length = 459 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/432 (31%), Positives = 234/432 (54%), Gaps = 30/432 (6%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ L+++ ET++A ++ L+EI+IERE + I GNIYKG++ +L + FVDI Sbjct: 1 MSKCLILSKNTYETKLALLEDDKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQK---QFTVRDISELVRQGQDLMVQVVKDPLGTKGA 117 GL+K AFL + E +K +F + D L+VQV + KGA Sbjct: 61 GLEKNAFL------------SFENKKNIPKFNIFD---------SLIVQVETEARDGKGA 99 Query: 118 RLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGV 177 RLT D ++ LV +P + ++ +S++IE+ E +KK+ + + G I+RT + Sbjct: 100 RLTLDYSINGENLVLLPNSKNLSISKKIEN---LETIKKLKDIFLNIDKGLILRTKSVEK 156 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 L + L+ + ++ + K T LY ++ ++ L D ++D +D Sbjct: 157 SPEALLEEYKKLEAINNQIQKDFKEKNTTL-LYDNNSILKKALT-LLDEDIDEFIIDDED 214 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGR-QPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 ++ + E K + + IF + ++ +I+RAL+RKV L+SG ++I++ Sbjct: 215 SFNKIKNTLEENKRNYLLKKFKKYFKDEDIFSYYKLDTQIERALDRKVYLESGASIVIEK 274 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+ ++D+NTG G+++ + IFNTN+EA + IARQ++LRNL GIIIIDFID+ Sbjct: 275 TEALVSIDVNTGQNTGNQSSQNLIFNTNLEACKEIARQIKLRNLAGIIIIDFIDLKKISD 334 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 R+++L L++ L KDR++ + FS LGLV+ TRKR + + +C C G + + Sbjct: 335 RKKILEELKRYLKKDRMEINSLDFSHLGLVQFTRKRQGKELSFYYREKCHYCEGTSYLLS 394 Query: 417 VETVCYEIMREI 428 + + + E+ Sbjct: 395 KDRIILNLFAEL 406 >UniRef50_B9JVK9 Ribonuclease E n=40 Tax=Rhizobiales RepID=B9JVK9_AGRVS Length = 1035 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 188/336 (55%), Gaps = 2/336 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A G+S++I + ++R Sbjct: 295 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNPADR 354 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +RLK+V + G G I+RTA + E+ D YL R+W V +Y Sbjct: 355 KRLKEVARDLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLNSTAPCLVY 414 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E +L +R +RD + ++ I V Y +F +P ++ Y PIF Sbjct: 415 EEGSLIKRSIRDLYNKDISEIVVSGEEGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRS 474 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 +E ++ R L+ +V LKSGGY+II+QTEA+ ++D+N+G +++DT TN+EA + Sbjct: 475 GIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREYSIEDTALQTNLEAAEE 534 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 +ARQLRLR+L G+I+IDFIDM + + R V L+ L DR + V S GL+EM+R Sbjct: 535 VARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMSR 594 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMR 426 +R R S+ C C G G +++ +V ++R Sbjct: 595 QRIRASVLESTTQVCQHCSGTGLIRSQSSVALHVLR 630 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + ETRV + G ++E E + ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL ++I P Sbjct: 61 YGGNRHGFLAFAEIHP 76 >UniRef50_B9JDP7 Ribonuclease E protein n=3 Tax=Alphaproteobacteria RepID=B9JDP7_AGRRK Length = 960 Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 187/338 (55%), Gaps = 2/338 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A G+S++I + +R Sbjct: 255 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDR 314 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 +RLK++ G G I+RTA + E+ D YL R+W V +Y Sbjct: 315 KRLKEIAKMLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLASTAPCLVY 374 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E +L +R +RD + ++ + V Y +F +P ++ Y PIF Sbjct: 375 EEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRS 434 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 +E ++ R L+ +V LKSGGYLI++QTEA+ ++D+N+G +++DT TN+EA Sbjct: 435 GIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNSGRSTREHSIEDTALQTNLEAADE 494 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 +ARQLRLR+L G+I+IDFIDM + + R V L++ L DR + V S GL+EM+R Sbjct: 495 VARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKNDRARIQVGRISHFGLLEMSR 554 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +R R S+ C C G G V++ +V ++R I Sbjct: 555 QRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGI 592 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + ETRV + G ++E E + ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL ++I P Sbjct: 61 YGGNRHGFLAFAEIHP 76 >UniRef50_C5EUP6 Ribonuclease G n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EUP6_9FIRM Length = 393 Score = 210 bits (535), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 204/386 (52%), Gaps = 17/386 (4%) Query: 17 AYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPH 76 A + G + ++ +E E ++ NIY G+V +V+ + AAFVDIG + + Sbjct: 16 AAVSGSRITQLMMEPEDSSSLLNNIYIGKVQKVVGNINAAFVDIGGGRTGYYSLD----- 70 Query: 77 TECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGA 136 E ++ V + ++ G +++VQV +D + TK LT + RY V G Sbjct: 71 ------ENKEHLFVSPSTGKLKAGDEIVVQVSRDAVKTKAPVLTGKLAFTGRYCVLTAGK 124 Query: 137 SHVGVSQRIESESERERLKKVVAEYCDEQG---GFIIRTAAEGVGEAELASDAAYLKRVW 193 + VG S +I + R++ ++ E E G G I+RT G + L + LK ++ Sbjct: 125 TGVGFSNKIGDNKYKARVRSMLNEALAEDGDRFGIIVRTNGAGATDEVLLQEYRQLKDMY 184 Query: 194 TKVMERKKRPQTRYQ-LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE 252 K + ++ +T Y +Y L +RD LD I D YE L ++ +Y E Sbjct: 185 LK-LSKEASCRTCYSCIYRALPGYIAAIRDSYSGTLDGIVTDIPAYYEELKDYLEKYQAE 243 Query: 253 MTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFV 311 KL Y + P+ L+ +++ ++ AL + V LKSGGYL+I+ TEAM +D+NTG + Sbjct: 244 DADKLTLYEDKLLPLSKLYSLDSALEHALNKHVWLKSGGYLVIEPTEAMVVIDVNTGKYS 303 Query: 312 GHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKD 371 G + + DTI N+EA I RQLRLRNL GII+IDFIDM E+ R ++ L +SKD Sbjct: 304 GKKKMQDTICRINMEAADEIGRQLRLRNLSGIILIDFIDMEREEDREMLMRHLGDVVSKD 363 Query: 372 RVKTSVNGFSALGLVEMTRKRTRESI 397 VKT+V + L LVE+TRK+ R+ + Sbjct: 364 PVKTTVVDMTRLNLVEVTRKKVRKPL 389 >UniRef50_C0ERY0 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERY0_9FIRM Length = 403 Score = 210 bits (534), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/382 (32%), Positives = 204/382 (53%), Gaps = 12/382 (3%) Query: 17 AYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPH 76 Y G+ E++ E + ++ I+GNIY RV RV G+ AF++IG ++ + S P Sbjct: 20 GYFQDGVPTELYCEPKEQQSILGNIYAARVERVAEGIHGAFLEIGDNQKCYYSLSAEQP- 78 Query: 77 TECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGA 136 + G E K + G ++VQ+ KD + TK T +I+L +Y VF Sbjct: 79 VKLSPGHEDKLYG----------GDIILVQITKDAVKTKLPVGTGNISLDGKYFVFTLTD 128 Query: 137 SHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKV 196 G+S++I + ERERL+ ++ +Y E+ G I+RT A GV E L + L+ + ++ Sbjct: 129 KRTGISKKIRNTVERERLETLLKKYTREEYGIIVRTNAAGVSEETLTKELELLQLRYEEL 188 Query: 197 MERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSK 256 M + K + LY E + ++ LD I D + L E+ + T+K Sbjct: 189 MRKAKIATGKTLLYREPPHYITLGKELPAKALDEILTDHAEVFTELKEYYKQTSESDTTK 248 Query: 257 LEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNL 316 + Y +++L+ + + A + + LKSG L+I+ TEAMT +D+NTG+ + + Sbjct: 249 ISFYEDTYSLYNLYRFAHYYEEAYGKYIWLKSGASLVIEHTEAMTVIDVNTGSVLKKKKQ 308 Query: 317 DDTIF-NTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 +DT+F N EA + IARQLRLRN+ GII+IDFI+M + + ++L L+ KDRV Sbjct: 309 EDTLFYQINREAAKEIARQLRLRNISGIIMIDFINMKDTAQKEKLLSLLDSECKKDRVHC 368 Query: 376 SVNGFSALGLVEMTRKRTRESI 397 +V +AL LVEMTR + R+ + Sbjct: 369 NVIDMTALNLVEMTRSKVRKPL 390 >UniRef50_Q0SR50 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium perfringens RepID=Q0SR50_CLOPS Length = 480 Score = 208 bits (530), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/400 (32%), Positives = 222/400 (55%), Gaps = 29/400 (7%) Query: 15 RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIM 74 RVA + +L E +IE E+ + G IYKG V RV+PG+++AF+DIG K A++ Sbjct: 14 RVAIKENNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQAYM------ 67 Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 + GE++K ++QG ++V+V+K+ G+KGA++T+ I+L RY V Sbjct: 68 -----ILGEDEKD---------LKQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLET 113 Query: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194 + + +S++IE+ ++ L+ + + + G +RT A+ E+ + L + + Sbjct: 114 SRNDISISRKIENLEFKKELENSLIK--PSELGVTVRTKAQSASIFEIQEEIEELYKNYK 171 Query: 195 KVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEF--TSEYIPE 252 +V+ K ++ G+ L +++RD DA I VDS YE + + SEY+ Sbjct: 172 EVIREGKFSLNPKKIMGKGDLINKIIRDDIDAYTSSIIVDSIEDYERIKDSISNSEYL-- 229 Query: 253 MTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG 312 K+ Y + +FD + +E EI +V L GG ++I++TEAM +D+N+G Sbjct: 230 ---KVTLYDDARSLFDYYGIEKEILSLRNNRVNLNCGGDIVIEKTEAMYVIDVNSGKNTN 286 Query: 313 HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 H+N + T + TN A IARQ+++RNLGGII++DFIDM ++++++++L L+ D Sbjct: 287 HKNKEKTAYETNKNAAIEIARQIKIRNLGGIILVDFIDMYSQENKKKILKILKDEFKSDS 346 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 + + F+ LGLV++TR R +SI + C C+G G Sbjct: 347 QRAKIFPFTELGLVQITRYRKGKSIYEYIEENCLACNGHG 386 >UniRef50_C6QC83 Ribonuclease, Rne/Rng family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QC83_9RHIZ Length = 1025 Score = 207 bits (527), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 208/383 (54%), Gaps = 2/383 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E++++ Q ++VQVVK+ G KGA LTT ++L RY V MP A G+S++I + +R Sbjct: 296 IQEVIKRRQIILVQVVKEERGNKGAALTTYLSLAGRYTVLMPNTARGGGISRKITNPQDR 355 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 RLK + E +G G IIRTA + E+ D YL R+W V + + +Y Sbjct: 356 RRLKSIAQELEVPEGMGLIIRTAGAARTKQEIKRDFEYLLRLWESVRDLTLQSTAPSLVY 415 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E L +R +RD + +++ I V ++ +F +P + Y P+F + Sbjct: 416 EEGDLIKRSIRDLYNKDVEEIVVAGDAGHQEAADFMKMLMPSHAKNVVAYREPTPLFTRY 475 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 VE ++ + +V L+SGGY++I+QTEA+ +D+N+G ++++T TN+EA Sbjct: 476 GVERQLNAMFQPQVTLRSGGYIVINQTEALVAIDVNSGKSTREFSIEETALATNLEAADE 535 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 IARQL+LR+L G+I+IDFIDM + + R V L+ AL DR + + S GL+EM+R Sbjct: 536 IARQLKLRDLAGLIVIDFIDMEEKRNNRAVERRLKDALRFDRARIQLGRISHFGLMEMSR 595 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE 450 +R R + ++C C G G +++ E++ ++R I A + + + AVA Sbjct: 596 QRLRTGVLEGSTSQCAHCQGTGIIRSTESIALAVLRGIEDAITAGANGPLVATTTSAVAL 655 Query: 451 ALKGEESHSLAEVEIFVGKQVKV 473 + + +A++E+ G V V Sbjct: 656 YILNSKRAYVADMEVRHGYSVTV 678 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L++ T P ETRV G ++E E AR+ + GNIY +V+RV P +QAAFVD G + Sbjct: 6 MLIDATHPEETRVVVQRNGRVEEFDFESAARKLLRGNIYLAKVTRVEPSLQAAFVDYGGN 65 Query: 64 KAAFLHASDIMP 75 + FL +++ P Sbjct: 66 RHGFLAFNEVHP 77 >UniRef50_A8VZD2 Alanine racemase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZD2_9BACI Length = 473 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 154/429 (35%), Positives = 229/429 (53%), Gaps = 21/429 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M + V+ +E R A I+ G + E + R G I G+++ + GM AAF+DI Sbjct: 1 MKRTIAVHTGLTEARGAVIEDGRVTEWLMSPGPTRLETGMIITGQITDIHDGMDAAFIDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK FLH S++ GE+ IS V +G L+++V++ TKG +LT Sbjct: 61 GSDKRGFLHKSEL---NRPDKGEDVP------ISRQVTKGAYLLLEVLRPGTDTKGPKLT 111 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I+ +Y V+MP + +V VS+++ SES RE + E E G IIRT AE Sbjct: 112 EKISFSGKYAVYMPFSRYVAVSKKMSSESVRESWRAFGKERLQEDEGLIIRTNAEEEDPE 171 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGEL-----ALAQRVLRDFADAELDRIRVDS 235 + + L+ K E K+ + G + ALA R+ RDF E + D Sbjct: 172 VIDREIDLLR---AKADEVKRAFLDQPIKAGAVHVDPSALAARISRDFLADEDTEVICDG 228 Query: 236 RLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIID 295 R YE L+ E +P S YT R+ + L++ E + + + V L +GG L+I+ Sbjct: 229 RQLYEELVR-EREVMPLGASV--SYT-RENVARLYEFERMMMQTVRPYVWLPNGGSLLIE 284 Query: 296 QTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 +TEAMT +D+N+G F G NL T + TN++A + IAR+LRLR + GII+IDFIDM+ +D Sbjct: 285 ETEAMTVIDVNSGRFTGKENLRKTAYQTNLQAAKVIARELRLREVSGIILIDFIDMDTDD 344 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 R+ VL +L Q +DR + +V GF++LGLVEMTRK++R I ++ C C G G V Sbjct: 345 DRKDVLKTLRQGCKQDRTRVNVIGFTSLGLVEMTRKKSRMPIGEIMKEPCGCCGGTGRVD 404 Query: 416 TVETVCYEI 424 T Y + Sbjct: 405 TANEQLYRV 413 >UniRef50_A8RTZ4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTZ4_9CLOT Length = 385 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 200/386 (51%), Gaps = 25/386 (6%) Query: 17 AYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPH 76 A + G + ++ +E + ++GNIY G+V +V+ + AAF+DIG + + Sbjct: 16 AVVSDGKVSQLMLEPDTADSLLGNIYIGKVQKVVSNINAAFIDIGPGCTGYYSLQE---- 71 Query: 77 TECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGA 136 R E ++ G +L+VQV KD + +K +T ++ RY V G Sbjct: 72 --------------RWKPERLKTGDELVVQVSKDAVKSKAPVVTERLSFTGRYCVLTVGK 117 Query: 137 SHVGVSQRIESESERERLKKVVAEYCDEQG----GFIIRTAAEGVGEAELASDAAYLKRV 192 + +G S +I S + RL++++ CD G G I+RT A V E + + A L R Sbjct: 118 TGIGFSAKIRDASYKARLRELLE--CDLAGTKDLGIIVRTNAVTVEECAVREELAELMRT 175 Query: 193 WTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE 252 W ++ LY L +RD L+ I D + L + E Sbjct: 176 WQRLSAEAGCRVCYSCLYRALPGYIAAIRDSFGGTLEEIITDVPEYHRELKAYLEMCQKE 235 Query: 253 MTSKLEHY-TGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFV 311 +L Y P+ L+ +E ++AL + V LKSGGYL+I+ TEAMT +D+NTG + Sbjct: 236 DAGRLTLYEDSLLPLGKLYSLETAFEKALGKNVWLKSGGYLVIEPTEAMTVIDVNTGKYS 295 Query: 312 GHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKD 371 G + + DTI+ N+EA I RQ+RLRNL GIII+DFIDM E+ R+ +L L + +S+D Sbjct: 296 GRKKMQDTIYKINMEAADEIGRQIRLRNLSGIIIVDFIDMEREEDRKALLAHLVEVVSRD 355 Query: 372 RVKTSVNGFSALGLVEMTRKRTRESI 397 VKT+V +AL LVE+TRK+ R+ + Sbjct: 356 PVKTTVVDMTALNLVELTRKKVRKPL 381 >UniRef50_C6LLP4 Cytoplasmic axial filament protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLP4_9FIRM Length = 408 Score = 204 bits (518), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 129/396 (32%), Positives = 212/396 (53%), Gaps = 15/396 (3%) Query: 18 YIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHT 77 Y+DG E+ +RE + GNIY G+V V+ +QAAFV+I + +L S+ Sbjct: 19 YLDGRA-AELSFDRETETPLPGNIYIGKVKNVVKNIQAAFVEIEDGISCYLPLSE----- 72 Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGAS 137 + + FT + S + G +L+VQ+ ++ + TK +T +I+ P +YLV G + Sbjct: 73 -----KAEPYFTNKTNSPRLVAGDELLVQIAREGVKTKAPTVTANISFPGKYLVLTSGKT 127 Query: 138 HVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVM 197 G+S ++ +++ERERL+++ + G+I+RT A E E+ +A L + + + Sbjct: 128 QTGISAKL-AKAERERLQQIAGRLPEGNFGWILRTNAAEAEEEEILREAETLAKRFEDIC 186 Query: 198 ERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKL 257 + + LY A L+D E + I D + Y+ L + +E +P KL Sbjct: 187 RTARYRTCKSCLYRSPAAWLAHLKDIRQTECEEILTDDQGLYDRLQAYLAENLPADAEKL 246 Query: 258 EHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNL 316 Y R P++ L+ +E + AL +V LKSG YL+I TEA+T +D+NTG + Sbjct: 247 SFYEDRLLPLYKLYSLEGAFEEALRERVWLKSGAYLVIQPTEALTAIDVNTGKCERGKKA 306 Query: 317 DDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTS 376 +T N+EA + ARQ+RLRNL GII+IDFI+M++++ +R+L +L+ L KD VK Sbjct: 307 SETFRKINLEAAREAARQIRLRNLSGIILIDFINMDSKEEEQRLLAALDAELQKDPVKAY 366 Query: 377 VNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 + LGL E+TRKR ++ + + P GR Sbjct: 367 AVDITPLGLAEVTRKRVQKPLAEKMRQSVP--QGRN 400 >UniRef50_Q2GES6 Ribonuclease, Rne/Rng family n=2 Tax=Neorickettsia RepID=Q2GES6_NEOSM Length = 549 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 133/484 (27%), Positives = 233/484 (48%), Gaps = 14/484 (2%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 ++L++ ETR+A + G+L E GNIY+G V +V +QAAFV+ Sbjct: 3 KILIDSRDGETRLAILRSGLLVGYDCEHTNSLPQKGNIYQGIVFKVDDSLQAAFVEYLPG 62 Query: 64 KAAFLHAS-------DIMPHTECVAGEEQKQFTVR---DISELVRQGQDLMVQVVKDPLG 113 + FL S D++ + A E K + + +E++++G L VQV K+ Sbjct: 63 EYGFLPFSEIPVIYFDLLEEVKANAIAEGKHVNLYKHFNATEVIKKGLVLFVQVTKEKRR 122 Query: 114 TKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE-YCDEQGGFIIRT 172 TK LT + LP RY V MP + +S++I E RL E + + G + + Sbjct: 123 TKDVTLTAYVKLPGRYCVLMPFLKDLILSKQIVDEQAVSRLTHFAEEEMANRKCGVVFKP 182 Query: 173 AAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIR 232 + + D L W KV+ + + + ++ E L ++ LRD D + + Sbjct: 183 YCADADKKNILGDYCSLLSEWEKVVSQNDKSKAPRLVFREANLVKKFLRDSYDGSVGEVI 242 Query: 233 VDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYL 292 V+ Y+ ++ + + Y+ P+FD + VE ++ E + L++G Y+ Sbjct: 243 VNHSDVYQEAKDYIQNSLHFENPNITLYSDTLPVFDKYKVEPQVDGLYEETIYLRNGAYI 302 Query: 293 IIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMN 352 +I+ TEA+T VD+N+G N+++T + N+EA I R L LR + GI++IDFIDMN Sbjct: 303 VINTTEALTAVDVNSGRMKKESNIEETAYKVNMEAVAEIVRHLELRGIAGIVVIDFIDMN 362 Query: 353 NEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 N + V +L A + R + + + GL+ ++++RT+ +I +CP C G+G Sbjct: 363 NSKYMLNVERALLDAFKRYRSRVQIAPINKFGLIALSKQRTKHNILDSHTVKCPCCEGKG 422 Query: 413 TVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVK 472 V +E +++ R ++ A V A+P +A A+ LA+ E VG + Sbjct: 423 KVLKME---HQVRRVFSAIYTAPRCREVTVTANPELAVAVFNGYRKMLAQAEKVVGGSIV 479 Query: 473 VQIE 476 +I+ Sbjct: 480 FKID 483 >UniRef50_Q9M498 Endoribonuclease E (Fragment) n=6 Tax=Magnoliophyta RepID=Q9M498_ARATH Length = 575 Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 129/376 (34%), Positives = 211/376 (56%), Gaps = 17/376 (4%) Query: 69 HASDIMPHTECVAGEEQKQFTVRDISEL-VRQGQDLMVQVVKDPLGTKGARLTTDITLPS 127 H++D + VA + K + +D + VR+G ++VQVVK+ LGTKG LT L S Sbjct: 179 HSADSLDSNASVA-KASKVMSSKDNKWIQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRS 237 Query: 128 RYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDA 186 R+ V + +GVS++I S ER RLK V+A+ QG G +RT A G EL D Sbjct: 238 RFWVLLTRCKRIGVSKKI-SGVERTRLK-VIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 295 Query: 187 AYLKRVWTKVMERKKRPQTRYQ----------LYGELALAQRVLRDFADAELDRIRVDSR 236 L W + + K L+ + V++D+ + +++++ VDS Sbjct: 296 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 355 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 TY + + + P++ +++E + P+FDL+++E EI+ L ++V L +GG L+I+Q Sbjct: 356 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 415 Query: 297 TEAMTTVDINTG-AFVGHRNLDD-TIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 TEA+ ++D+N G G N + I N+ A + IAR++RLR++GGII++DFIDM +E Sbjct: 416 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 475 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 ++R V +++A+ +DR V+ S GL+E+TRKR R S+ ++ C CH G V Sbjct: 476 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 535 Query: 415 KTVETVCYEIMREIVR 430 + +ET +I +EI R Sbjct: 536 EALETTFSKIEQEICR 551 >UniRef50_C5RGP2 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGP2_CLOCL Length = 475 Score = 201 bits (510), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 145/474 (30%), Positives = 234/474 (49%), Gaps = 49/474 (10%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E+ + R+A D L +IE E + G IY G V ++P ++ AF+DIG Sbjct: 3 EIFIEKDKPYLRIAIKDHEKLLACYIEEETEEAVPGQIYLGIVKNIVPAIKGAFIDIGKA 62 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 K AF+H + RD+ ++G +V+V+++ K A +T+ I Sbjct: 63 KDAFMHLDN-----------------NRDL----KKGDYFLVEVLREATELKSANVTSLI 101 Query: 124 TLPSRYLVFMPGASHVGVSQRIESES----ERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T+P Y+V P + +S++I + +E+LK V + Y G +R++AE V Sbjct: 102 TIPGTYVVVNPMEKALKISRKISNSKFINEVKEQLKDV-STY-----GITVRSSAENVDI 155 Query: 180 AELASDAAYLKRVWTKVMERKK---RPQTRYQLYGELALAQRVLRDFADAELDRIRVDSR 236 + + L V K++ + K +PQ Y G L R+LRD+ + RI VD Sbjct: 156 NIIREEVQALNIVVDKIIAKGKYSLKPQLIYDDGGALG---RILRDYINDGTKRIIVDDI 212 Query: 237 LTYEALLEFTSEYIPEMTSKLE---HYTGRQPIFDLFDVENEIQRALERKVELKSGGYLI 293 Y+ E I ++ S E H R IFD + +E EI +KV LKSGGY+I Sbjct: 213 KNYD----LVKENIEKLHSSAELIMHEESR-GIFDCYSIEKEILALRHKKVVLKSGGYII 267 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 I++TEA+ ++D+N+G G + T F TN+EA + IARQ+ LRNL GII+IDFI+M + Sbjct: 268 IEKTEALYSIDVNSGKSTGEVAISKTAFKTNLEAAEEIARQIILRNLSGIIVIDFINMKD 327 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGT 413 + + V+ LE A KD KT++ F+ + LV++TRK+ + I L C C G G Sbjct: 328 KKEKTEVIKILEAAFKKDNNKTTIYPFTDVNLVQITRKKRGKDIGSFLEESCKHCGGEGA 387 Query: 414 VKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFV 467 + + I +++++ + + F++ + K E L E F+ Sbjct: 388 RLKWDYLKLLIKNQLIKLKGQHITKEFVI----TIDSKYKSEVQKKLTEFITFI 437 >UniRef50_Q8GZQ4 Endoribonuclease n=8 Tax=core eudicotyledons RepID=Q8GZQ4_ARATH Length = 996 Score = 201 bits (510), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 129/376 (34%), Positives = 211/376 (56%), Gaps = 17/376 (4%) Query: 69 HASDIMPHTECVAGEEQKQFTVRDISEL-VRQGQDLMVQVVKDPLGTKGARLTTDITLPS 127 H++D + VA + K + +D + VR+G ++VQVVK+ LGTKG LT L S Sbjct: 506 HSADSLDSNASVA-KASKVMSSKDNKWIQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRS 564 Query: 128 RYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDA 186 R+ V + +GVS++I S ER RLK V+A+ QG G +RT A G EL D Sbjct: 565 RFWVLLTRCKRIGVSKKI-SGVERTRLK-VIAKTLQPQGFGLTVRTVAAGHSLEELQKDL 622 Query: 187 AYLKRVWTKVMERKKRPQTRYQ----------LYGELALAQRVLRDFADAELDRIRVDSR 236 L W + + K L+ + V++D+ + +++++ VDS Sbjct: 623 DGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSP 682 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 TY + + + P++ +++E + P+FDL+++E EI+ L ++V L +GG L+I+Q Sbjct: 683 RTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQ 742 Query: 297 TEAMTTVDINTG-AFVGHRNLDD-TIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 TEA+ ++D+N G G N + I N+ A + IAR++RLR++GGII++DFIDM +E Sbjct: 743 TEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADE 802 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 ++R V +++A+ +DR V+ S GL+E+TRKR R S+ ++ C CH G V Sbjct: 803 SNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRV 862 Query: 415 KTVETVCYEIMREIVR 430 + +ET +I +EI R Sbjct: 863 EALETTFSKIEQEICR 878 >UniRef50_Q6B930 Ribonuclease E n=1 Tax=Gracilaria tenuistipitata var. liui RepID=Q6B930_GRATL Length = 497 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/376 (31%), Positives = 204/376 (54%), Gaps = 14/376 (3%) Query: 38 VGNIYKGRVSRVLPGMQAAFVDIGLD-KAAFLHASDIMPHTECVAGEEQKQFTVRDISEL 96 V +IY G V ++ + AAF+ + K+ F+H +DI +K V+ I ++ Sbjct: 34 VNDIYIGTVEKIFTSINAAFIKLNKSGKSGFIHINDI--------KHLKKGKHVKSIEKV 85 Query: 97 VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKK 156 + Q ++VQV K+P KG RLT +I L +YLV MP S + +S +I +ER L Sbjct: 86 LSINQIILVQVTKEPTIYKGPRLTANIHLHGKYLVLMPFCSTICISHKIYDHNERTYLYS 145 Query: 157 VVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALA 216 + + G +I+++A+GV E + D LK+ W + + + LY + L Sbjct: 146 LGVLLKPGKMGLLIKSSAQGVKEKIILKDLDDLKKQWGFIEKAIIEYSSPLLLYKDEDLI 205 Query: 217 QRVLRDFADAELDRIRVDSRLTYEALLEFTSEY---IPEMTSKLEHYTGRQPIFDLFDVE 273 +R++RDF + + +I +DS+ L + ++ + + L+ Y ++ I D F ++ Sbjct: 206 KRIIRDFYEDSVTKIIIDSKEGLNQLNYYLYKWNCISNRIKTILQLYNHQKCILDEFYIK 265 Query: 274 NEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIAR 333 + I AL+ KV+L GG++II+ EA+T +D+N+G+F N + I TN A IA Sbjct: 266 HAINNALKPKVKLPYGGHIIIESNEALTVIDVNSGSFNKSGNSKEAILKTNFYAAIEIAH 325 Query: 334 QLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRT 393 QL++RN+ G+IIIDFIDM+++ + ++L + L D K + S LGLVE+TR+R Sbjct: 326 QLKIRNINGVIIIDFIDMSSQGDQLQLLEHFSKLLKLDSAKPQIVQLSELGLVELTRRRR 385 Query: 394 RESIEHVLC--NECPT 407 +S++ + N C T Sbjct: 386 GQSLQELFIHENNCYT 401 >UniRef50_Q2GKZ9 Ribonuclease, Rne/Rng family n=10 Tax=Anaplasmataceae RepID=Q2GKZ9_ANAPZ Length = 636 Score = 197 bits (502), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 114/342 (33%), Positives = 183/342 (53%), Gaps = 4/342 (1%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP--GASHVGVSQRIESESE 150 + +++ Q LMVQ+ K+ G+K A +T I L RY +FMP G + G+S+RI+ Sbjct: 167 VQNVIKVDQKLMVQITKEERGSKCATFSTYIVLAGRYCIFMPNSGNKNSGISRRIDDCVH 226 Query: 151 RERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQL 209 R+ LK+ + E ++ G IIRTA EL D +YL+ W +V + L Sbjct: 227 RKNLKEFLDEMKLPKEAGVIIRTAGSNRTHKELERDLSYLQSTWDEVKSSFESVTHPSLL 286 Query: 210 YGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDL 269 Y E + +R LRDF D + + V + + E+ ++ Y G PIF Sbjct: 287 YVEADVIKRTLRDFCDENVHDVVVAGSKAFGLVKEYAKSMFGNRL-RVRTYKGSIPIFTH 345 Query: 270 FDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQ 329 + V +I K+ L SGGYL+I TEA+ ++D+N+G G ++++T + TN+EA + Sbjct: 346 YRVNAQILELYTDKIYLPSGGYLVITPTEALVSIDVNSGRMTGEDSIEETAYRTNMEAVK 405 Query: 330 AIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMT 389 IARQ+ LR L G+I+IDFIDM + R V + +A D+ K SA GL+E++ Sbjct: 406 EIARQVNLRGLSGLIVIDFIDMVKYRYCRAVEAEVREAFKGDKAKIQFGYISAFGLMEIS 465 Query: 390 RKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV 431 R+R ++SI +C C G G +++E++ I+R++ V Sbjct: 466 RQRVKQSILDSSTVQCHHCKGVGRTRSLESISASILRDVSYV 507 Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVG-NIYKGRVSRVLPGMQAAFVDIGLD 63 L+ V E RVA +D G + E E + R+ + G NIY V R+ P +QA F++ G+ Sbjct: 14 LIDAVYLDEIRVAVLDEGKVVEFDQELKDRKQLRGGNIYFAVVRRIEPSLQAVFIEYGVG 73 Query: 64 KAAFLHASDI 73 K FL S+I Sbjct: 74 KHGFLPFSEI 83 >UniRef50_A5CEM7 Ribonuclease E n=2 Tax=Orientia tsutsugamushi RepID=A5CEM7_ORITB Length = 675 Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 112/397 (28%), Positives = 210/397 (52%), Gaps = 9/397 (2%) Query: 91 RDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGAS-HVGVSQRIESES 149 ++I +++ GQ ++VQ K+ G K A TT I+L +Y + P S H G+S+RI + Sbjct: 165 QEIQDVISSGQIVLVQATKESRGNKNASFTTYISLSGKYCILTPNLSNHSGISRRITNSE 224 Query: 150 ERERLKKVVAEYCDE---QGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTR 206 +R++LK +V + IIRTA E+ D YL ++W +++ K+ + Sbjct: 225 DRKQLKTIVGNLISKITKTSSVIIRTAGSRRTAYEIKKDFNYLLKLWNEIINTAKQAKPP 284 Query: 207 YQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPI 266 +Y E + ++ + D + + + + + Y+ ++F + +P K++ + PI Sbjct: 285 AFIYVENDIIRKTILDIYNISVQEMIIQGKAAYDYAVKFMNAILPSEVHKIKEHKSTIPI 344 Query: 267 FDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIE 326 F +++E ++ + V L SGGY++I+ TEA+ +D+N+G +N+++T TN+E Sbjct: 345 FAQYNLEEQLATLYKPIVTLPSGGYIVINPTEALIAIDVNSGKDTSEQNIEETAVKTNLE 404 Query: 327 ATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLV 386 A + I+ Q++LRNL G+I IDFI M + + + + S ++ L+KD+ K V+ ++ G++ Sbjct: 405 AAKEISHQIKLRNLSGLITIDFICMTDSKNHKLIEKSFKKYLAKDKAKIQVDSINSFGVL 464 Query: 387 EMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASP 446 +++R+R R S C C G+G V+ E+ I+R I H S+ VYA Sbjct: 465 QLSRQRLRPSFLESNSVICSHCSGKGIVRAEESNAMIILRTIENEIHTSKSNIINVYAHL 524 Query: 447 AVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 + + +A++E K+ VQ++ YN Q Sbjct: 525 HSVTYILNNKRTEIADIE----KKYNVQLK-FYNDFQ 556 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 2/77 (2%) Query: 1 MTAELLVNVT-PSETRVAYIDGGI-LQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFV 58 MT +LV+ + P+ETRVA ID + EI E ++ I GNIY ++++ P +QAAF+ Sbjct: 1 MTKRILVDASYPNETRVALIDNNCRIAEIEYETASKHLIKGNIYLATITKIEPSLQAAFI 60 Query: 59 DIGLDKAAFLHASDIMP 75 D K+ FL S+I P Sbjct: 61 DYSNGKSGFLPFSEIHP 77 >UniRef50_A8LRP5 Ribonuclease n=35 Tax=Rhodobacterales RepID=A8LRP5_DINSH Length = 1026 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 115/338 (34%), Positives = 188/338 (55%), Gaps = 2/338 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESER 151 I E+++ Q L+VQVVK+ G KGA LTT ++L RY V MP A G+S++I + +R Sbjct: 358 IQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDR 417 Query: 152 ERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 ++LK++ +E +G G I+RTA + E+ D YLKR+W ++ + + +Y Sbjct: 418 KKLKEIASEIEVPRGAGLIVRTAGAKRTKTEIKRDYDYLKRLWEQIRDLTLKSIAPAPIY 477 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E L +R +RD ++D + V+ Y +F +P ++ Y P+F + Sbjct: 478 EEGNLIKRSIRDLYSRDIDEVLVEGEEGYRVAKDFMKMLMPSHAKNVKLYNENLPLFARY 537 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 VE+ + V+LKSGGYL+I TEA+ +D+N+G ++++T TN+EA + Sbjct: 538 QVESYLAGMFNPTVQLKSGGYLVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEE 597 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 +ARQ+RLR+L G+I+IDFIDM + V L+ L DR + V S GL+EM+R Sbjct: 598 VARQVRLRDLAGLIVIDFIDMEERRNNTAVEKRLKDKLKTDRARIQVGRISGFGLLEMSR 657 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +R R + + C CHG G +++ ++ I+R + Sbjct: 658 QRLRPGMLEITTQPCNHCHGTGLIRSDNSLALSIVRAL 695 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T ETRV +DG ++E E +R + GNIY +V+RV P +QAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGTKVEEFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMP 75 G ++ FL S+I P Sbjct: 61 YGGNRHGFLAFSEIHP 76 >UniRef50_UPI0001973AFC ribonuclease n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973AFC Length = 441 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 139/427 (32%), Positives = 220/427 (51%), Gaps = 38/427 (8%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 + +LL+ + A + G + +++E RGI+GNIY G+V ++ + +AFVD+G Sbjct: 5 SNKLLITRWNGQILTALTEDGKCRSLNLEPADSRGILGNIYIGKVKNIVKNINSAFVDLG 64 Query: 62 LDKAAFLHASDIMPH------TECVAGEEQKQ-----------------FTVRDISELVR 98 + + + H AG +K F VR L + Sbjct: 65 SGQIGYYSLKENKRHLFTDEIAAAQAGNRKKTEGEENGTEEGWMKKSDGFPVRAKERLPK 124 Query: 99 QGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVV 158 G +++VQV +D + TK LT+++ +YLV G + +G S +I + +E LKK++ Sbjct: 125 AGDEIIVQVERDAVKTKDPVLTSNLNFTGKYLVLTLGKNQIGFSGKIRDGAWKESLKKIL 184 Query: 159 AEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKR------PQTRYQLYGE 212 E D+ G I+RT A EA++ S + R + ERK R +T Y L Sbjct: 185 EEKKDDSFGIIVRTNAR---EADIQS----ILRELELLKERKSRLFATAGWRTCYSLLSS 237 Query: 213 LALAQ-RVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLF 270 + +RD L+ I D R Y+AL + E E KL Y P+ L+ Sbjct: 238 SEPSYVNSIRDTYAENLEAIVTDDRDCYDALRTYMEENQREDLEKLSFYEDTMVPLAKLY 297 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 ++ +++AL + V LKSGGYL+I+ TEA+T +D+NTG + G + +TI N EA Sbjct: 298 SLDTAMEQALGKHVWLKSGGYLVIEPTEALTVIDVNTGKYAGKKTQAETILRINREAAVE 357 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 IARQ++LRNL GIII+DFIDM+ ++ ++ ++ LE L +D VKT + + LGLVE+TR Sbjct: 358 IARQMQLRNLSGIIIVDFIDMDADEDKKELMRLLELELLRDPVKTVLVEMTKLGLVEITR 417 Query: 391 KRTRESI 397 K+ R + Sbjct: 418 KKIRRPL 424 >UniRef50_C0D9K4 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D9K4_9CLOT Length = 400 Score = 194 bits (494), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 125/378 (33%), Positives = 193/378 (51%), Gaps = 20/378 (5%) Query: 27 IHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQK 86 + +E E ++ NIY G+V +V+ + AAFV+IG + +L P G + Sbjct: 26 LTLEPEQGGSLLNNIYIGKVQKVVKNISAAFVEIGGGRVGYLPLEGTCPRVLNRPGAKN- 84 Query: 87 QFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIE 146 + G +L++QV KD + TK +T ++ RY V G V S R+ Sbjct: 85 ----------LAPGDELIIQVEKDAVKTKAPVVTCRLSFAGRYCVLTAGKPGVNFSSRLT 134 Query: 147 SESERERLKKVVAEYCDEQG----GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKR 202 +S + R++ V+ E +G G I+RT A GE +L ++ A L + V + Sbjct: 135 DQSFKRRVRPVLEEAVRARGHEACGLIVRTNAGEAGEEQLLAELAVLFDQYESVQNQGNH 194 Query: 203 PQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTG 262 LY L +RD L+ + D YE L + + + KL Y Sbjct: 195 RVCYSCLYRSLPGYMASVRDSLGGSLEAVLTDQADVYEELKHYLALNQQKDLEKLSFYD- 253 Query: 263 RQPIFDL---FDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDT 319 P+ L + ++ ++ AL ++V LKSGGYL+I+ TEAM +D+NTG + G + L +T Sbjct: 254 -DPLLSLGALYSLDKVMEEALGKRVWLKSGGYLVIEPTEAMVVIDVNTGKYSGKKTLQET 312 Query: 320 IFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNG 379 I N+EA IA Q+RLRNL GII++DFIDM ++R +L +L +A+S D VKT+V Sbjct: 313 ILKINLEAAVEIAHQIRLRNLSGIILVDFIDMEPGENREILLKALSEAVSADPVKTAVVD 372 Query: 380 FSALGLVEMTRKRTRESI 397 + L LVEMTRK+ R + Sbjct: 373 MTKLNLVEMTRKKVRRPL 390 >UniRef50_A0Q1T9 Ribonuclease G n=4 Tax=Clostridium RepID=A0Q1T9_CLONN Length = 481 Score = 194 bits (492), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 137/477 (28%), Positives = 249/477 (52%), Gaps = 33/477 (6%) Query: 15 RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIM 74 R+ + IL+E IE E G IYKG V ++P ++ AF+DIG DK A+++ + Sbjct: 14 RIVLREDDILKECFIEEEKLEPSPGEIYKGVVKNIVPAIKCAFIDIGYDKNAYMYLN--- 70 Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 +F D V+ G +++V+++K+ LG KG ++T+ I++P RY+V + Sbjct: 71 -----------HKFKNDD----VKNGDEVLVEIMKESLGEKGPKVTSSISVPGRYVVIVT 115 Query: 135 GASHVGVSQRIESESERERLKKVVAEYCDEQG--GFIIRTAAEGVGEAELASDAAYLKRV 192 +G S++IE + + K + + ++ G +IRT A ++ + L Sbjct: 116 HNKKIGFSKKIE---DNDNFKSYIIDNINKPDDIGIMIRTNALDATIEDINKELEKLYDN 172 Query: 193 WTKVMERKK---RPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEY 249 + K+++ +P+ Y G L R+L D ++ V++ E + EF + Sbjct: 173 YKKIVQEGTYSLKPKLLYNGGGTLG---RILNDILTFNTKKVIVNNEDDAEYIKEFVEDK 229 Query: 250 IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGA 309 ++ ++E Y+G+Q +F +++E EI K+ L SGG ++ID+TEAM +D+N+G Sbjct: 230 -SDLELEIEVYSGKQSLFSHYNIEKEILSLRNNKIVLPSGGNIVIDRTEAMYVIDVNSGK 288 Query: 310 FVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALS 369 ++D T TN+EA Q IARQ+ +RNL GIIIIDFID++N +++++++H L++ Sbjct: 289 NTKQTSIDKTALVTNLEAAQEIARQIMMRNLSGIIIIDFIDIHNYEYKKKIMHILKEEFK 348 Query: 370 KDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIV 429 +D+ KT + F+ L LV++ RKR ++I + +C CHG+ +E + I EI Sbjct: 349 EDKKKTVIYPFTQLNLVQIARKRRGKAISEYIEEDCSMCHGKSKRIKLEYLNKLIKDEIT 408 Query: 430 RVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 ++ Y+ + + + G+ + E+E G + + + N E F V Sbjct: 409 KIDEGYNIKDIYIEIDEIYKKDILGDIIKFIEEIE---GMHKSIYVNFISNLEYFKV 462 >UniRef50_D0MD03 Ribonuclease, Rne/Rng family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD03_RHOM4 Length = 604 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 104/303 (34%), Positives = 181/303 (59%), Gaps = 1/303 (0%) Query: 96 LVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLK 155 L+++ Q L+V+++K+P+ +KG+R++TDI+L R+LV +P A++V VS++I S ER RL+ Sbjct: 180 LLKRDQPLLVKIIKEPISSKGSRVSTDISLAGRFLVLVPFANYVAVSKKITSYKERRRLR 239 Query: 156 KVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMER-KKRPQTRYQLYGELA 214 + E G I+RT AEG L +D L W ++ ++ + P+ L+ ++ Sbjct: 240 ALARSLLPEGFGVIVRTVAEGQTAKALDTDLRLLLEKWERIEKKLAEHPKPPVLLHEDVN 299 Query: 215 LAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVEN 274 + V+RD + RI VD+ + + + P ++ Y G++ IF + Sbjct: 300 MVSSVIRDLFSEDCTRILVDNPRLHRNIRSYVQAVAPHKVEVVQLYRGKEHIFKATGIAE 359 Query: 275 EIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ 334 ++ +A E +V+L SGGYL I+ TEAM +D+N+G + ++ N+EA + IA+Q Sbjct: 360 QVAQAFESRVDLPSGGYLYIEHTEAMHVIDVNSGRAGRGLSQEENSLRVNLEAARVIAQQ 419 Query: 335 LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTR 394 +R+R+LGGII+IDFID+ +E ++++V L++ KDR T + S GLV++TR+R R Sbjct: 420 VRVRDLGGIIVIDFIDLKDEKNKKKVYDELKKEFRKDRAVTKILPMSDFGLVQITRQRLR 479 Query: 395 ESI 397 S+ Sbjct: 480 PSL 482 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 36/75 (48%), Positives = 48/75 (64%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E+++N +TR+A ++ G L E +IE +GNIY RV RV+P +QAAFVDI Sbjct: 1 MAKEIIINAEKDQTRIAIVEDGTLAEFYIEDPEHERTIGNIYLARVCRVMPSIQAAFVDI 60 Query: 61 GLDKAAFLHASDIMP 75 G + AFLH SDI P Sbjct: 61 GQQQDAFLHFSDIAP 75 >UniRef50_Q1V2D3 Ribonuclease E/G n=5 Tax=Bacteria RepID=Q1V2D3_PELUB Length = 619 Score = 191 bits (485), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 98/306 (32%), Positives = 181/306 (59%), Gaps = 2/306 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVG-VSQRIESESER 151 I E+++ Q +++QV+KD G KGA L+T I++ +Y+V MP G +S++I + ER Sbjct: 178 IQEVIKPNQVILIQVLKDERGQKGAALSTFISIAGKYIVLMPNTPKGGGISRKIFNPGER 237 Query: 152 ERLKKVVAEYC-DEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 ++++ ++ + ++ G I+RTA + ++ D L + W ++ E ++ Sbjct: 238 KKIRTILNDIVIPKEMGLIVRTAGSNKTKNDIDHDLQTLIKTWNEIKENALNSIAPSLIH 297 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 E + +R LRD D + I ++ Y+ F +P K++ Y + P+F Sbjct: 298 QESDIIKRTLRDMYDESTNSIVIEGNEGYKKAQNFMKLMMPSHVKKIKKYREKVPLFFKE 357 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 ++E ++ + + +++LKSGGYL+I+ TEA+ ++DIN+G+ + +N++ T +TN+EA + Sbjct: 358 NIEEKLNQIYDSEIKLKSGGYLVINPTEALVSIDINSGSSIKQKNVESTALDTNLEAAEE 417 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 I+RQ+++R+L G+IIIDFIDM + +RR V L++ DR + + S GL+EM+R Sbjct: 418 ISRQIKIRDLSGLIIIDFIDMLSFGNRRLVERKLKEQCRTDRARIQIGRISTFGLLEMSR 477 Query: 391 KRTRES 396 +R RES Sbjct: 478 QRLRES 483 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M L ++ + P+ETRV G +++ E I NIY G+VSRV P +QAAF+D Sbjct: 1 MEKNLYIDASHPNETRVVLKSGENIEDYEYEGLKNNLIKNNIYLGKVSRVEPSLQAAFID 60 Query: 60 IGLDKAAFLHASDI 73 G D+ FL +DI Sbjct: 61 FGRDRHGFLSFNDI 74 >UniRef50_O67311 Cytoplasmic axial filament protein n=1 Tax=Aquifex aeolicus RepID=O67311_AQUAE Length = 458 Score = 191 bits (484), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 116/432 (26%), Positives = 224/432 (51%), Gaps = 30/432 (6%) Query: 21 GGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECV 80 G L++ +ER + G KG V + P + F+D+GL K A L Sbjct: 23 GTELKDFKVERRKEKYRTGAFLKGLVKKECPALDGFFLDVGLTKEALL------------ 70 Query: 81 AGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVG 140 +E+K + +R G ++VQ+ + KGA++T +++P +Y+V+ P + Sbjct: 71 --QEKKN------CKNLRIGDSVIVQLKRKERDLKGAKVTCKVSIPGKYIVYFPETKKLN 122 Query: 141 VSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERK 200 S++++ + E LKK++ E +++ G IIR +A + ++ + L+ W + E+ Sbjct: 123 FSKKLKGFAFTEDLKKILKEELNDREGVIIRASAISATKEQILKELQELRNKWESLKEKA 182 Query: 201 KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHY 260 K+ G+ + +L D+ + I VD+ + ++EF + I KL + Sbjct: 183 KKVNKGILEEGQPQFIKTIL-DYWGF-IKNIYVDNGDVWGEIVEFFGDSIKH---KLRYV 237 Query: 261 TGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTI 320 + + I + + V LK+GG+++I+QTEA+T++D+N+G G ++L++T Sbjct: 238 NTIDTLPGGITLNQLIDKLTSKTVWLKNGGFIVIEQTEALTSIDVNSGETCG-KSLEETA 296 Query: 321 FNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGF 380 +N N+EA + +A+Q++ RNL GIII+D IDM E + +L +++ + ++ + G Sbjct: 297 YNVNLEALKEVAKQIKFRNLSGIIIVDLIDMKKEKTKESLLSEVKKIFEGEGLRIKIYGI 356 Query: 381 SALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRF 440 + LGL+EMT+K ESI V+ CP C G+G VK+ E + + + + + + + Sbjct: 357 TKLGLLEMTKKWESESIYEVIGETCPHCQGKGFVKSKEFILHTLEKALEKTR----GKKI 412 Query: 441 LVYASPAVAEAL 452 ++ P+VA+ + Sbjct: 413 VLKVHPSVAKTV 424 >UniRef50_A5ZQK1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZQK1_9FIRM Length = 396 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/398 (30%), Positives = 198/398 (49%), Gaps = 17/398 (4%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 +L+N P T A + + E+ +E ++ + NIY G+V + +QAAFV + Sbjct: 1 MLLNEVPC-TVCAIVQDQKVIELRLEPSGKKNTLNNIYVGQVENIAANIQAAFVRLSDSV 59 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTV-RDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 +L P +C +T R + +R G L+VQ+ ++ + K LT ++ Sbjct: 60 NGYL------PLNQCTNA----IYTDGRKTDQPLRPGDQLLVQINREAMKGKLPALTANL 109 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE---YCDEQGGFIIRTAAEGVGEA 180 +YLV G +G S ++ S+ E L K + E + + G I RT A + Sbjct: 110 NFSGKYLVLTTGNRKIGFSNKL-SKEESSLLNKWLEEERSLPEREYGIIARTNAAEASKE 168 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 E + LK+ + KV + LY +RD +LD I D +E Sbjct: 169 EFFHELEMLKKQYEKVAVHGRNRTCYSLLYEAEPFYLAAVRDVYTRDLDEIVTDIPEIHE 228 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + SE+ P+ L+ Y + P++ L+ +E I K+ LKSGG+L+I QTEA Sbjct: 229 KIFAYLSEFQPDKLEILKLYQDKLLPLYKLYSLEGAIDEVCHEKIWLKSGGFLVIQQTEA 288 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 ++D+N+G + G + ++T N+EA IARQ+RLRNL GII++DFI+M N DH+ Sbjct: 289 FVSIDVNSGKYTGKKKAEETYRKINLEAAAEIARQIRLRNLSGIILVDFINMENPDHQDE 348 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESI 397 + H L++ L KD VK + L ++EMTR++ R + Sbjct: 349 LFHVLQKYLRKDPVKCKAIDITPLHILEMTRQKVRRPL 386 >UniRef50_C6J9J6 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9J6_9FIRM Length = 398 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 116/385 (30%), Positives = 197/385 (51%), Gaps = 14/385 (3%) Query: 17 AYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPH 76 AY + G + E+ E + +GNIY G++ + + AAFV I + +L SD P+ Sbjct: 17 AYEEDGKVMELRFEPVGEKSSLGNIYVGQIENIAANIGAAFVQISAGEKCYLQLSD-APN 75 Query: 77 TECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGA 136 +V+ ++ G +++VQ+ ++ + K +TT++ +YLV G Sbjct: 76 AIYA--------SVKKGDRPLKAGDEILVQISREAMKGKLPAVTTNLNFTGKYLVLTTGD 127 Query: 137 SHVGVSQRIESESERERLKKVV---AEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 G+S ++ S +R R+ K + D++ G I+RT A + E+ + YLK ++ Sbjct: 128 KKFGLSSKL-SNDDRSRISKWMEAEVNRPDKEFGIIVRTNAADASKEEILKELEYLKGLY 186 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 K + +Y +RD L+ I D + ++ + PE Sbjct: 187 HKAAVDGRSRTCFSCVYRTEPFYISAVRDANSRNLEEIITDIPEISRQISDYLNSNSPEE 246 Query: 254 TSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG 312 KL Y + P++ L+ +E ++ KV L SGG+L+I QTEA ++D+N+G F G Sbjct: 247 KEKLRFYDDKLLPLYKLYRLETVLEEIQHEKVWLNSGGFLVIQQTEAFVSIDVNSGKFTG 306 Query: 313 HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 + + +T N+EA + IARQLRLRNL GII+IDFI+M N+DH+ + H L++ L KD Sbjct: 307 KKKMQETYRKINLEAAKEIARQLRLRNLSGIILIDFINMENQDHQDELFHVLQKYLRKDP 366 Query: 373 VKTSVNGFSALGLVEMTRKRTRESI 397 VK + L ++E+TRK+ R+ + Sbjct: 367 VKAKAVDITPLHILELTRKKVRKPV 391 >UniRef50_B7ANV1 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7ANV1_9BACE Length = 418 Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 133/426 (31%), Positives = 208/426 (48%), Gaps = 45/426 (10%) Query: 5 LLVNVTPSETRVAYIDGGILQEIH-IEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 LL+ +T A D ++ + IE E+ I+GNIY GRV V+ + AAF++ Sbjct: 4 LLITKFNGQTLCAVCDQMTIRTVRVIEDES---ILGNIYVGRVENVVNNINAAFIEYARG 60 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 K + +D E F ++ + G ++VQV ++ + TK LT I Sbjct: 61 KKGYYSLTD----------NEHHIFLNPKNNDRMCIGDLVLVQVSREGVKTKEPTLTGRI 110 Query: 124 TLPSRYLVFMPGA----SHVGVSQRIESESERERLKKVVAEY------------------ 161 + RY S V +S++I E R LK +V + Sbjct: 111 GITGRYCALTLDCKSENSSVFISKKITDEDRRSYLKGIVKDAMNNALNAYTASSVNSIPT 170 Query: 162 -CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVL 220 D I+RT AE E + ++ + R+ T + + K TR L + + L Sbjct: 171 ASDMHFNIIVRTNAEDAPEEPVTAEVS---RIVTTMCDILKDAVTRKGLTRMYSPEESCL 227 Query: 221 RDFAD---AELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEI 276 D + L++I D Y+++ + E P +KLE Y Q P+ L+ VE++I Sbjct: 228 EDVQNMRATNLEKIITDIPEVYDSVRRYLGENEPGEAAKLEFYDDMQLPLNKLYSVESQI 287 Query: 277 QRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNL-DDTIFNTNIEATQAIARQL 335 AL ++V L SGGYL+I+ TEA+T +D+N+G F G+R L D+T N+EA I RQL Sbjct: 288 STALNKRVWLPSGGYLVIEPTEALTVIDVNSGKFTGNRKLKDNTYLKINMEAAVEIGRQL 347 Query: 336 RLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRE 395 LRNL GII++DFI++N + ++ ++ L L D V TSV + LGLVE+TRK+ R+ Sbjct: 348 MLRNLSGIIVVDFINLNTFEEKKELMSYLADILKADTVPTSVVDMTRLGLVEITRKKIRK 407 Query: 396 SIEHVL 401 + V+ Sbjct: 408 PLHEVI 413 >UniRef50_B4U851 RNA binding S1 domain protein n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U851_HYDS0 Length = 384 Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 112/363 (30%), Positives = 196/363 (53%), Gaps = 35/363 (9%) Query: 39 GNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVR 98 +I+ G++ + G++ FVDIGL K +L P E K++ + Sbjct: 37 SSIFLGKIKSIANGVEGYFVDIGLKKDGYL------PFKEA-----DKEYKI-------- 77 Query: 99 QGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVV 158 G ++VQV K+P KGA+LTT ++ +Y+++ V S + + + + KV Sbjct: 78 -GDYVVVQVKKEPSKFKGAKLTTKLSFKGKYIIYYEADKSVKTSHLFDENFKSDYIDKVY 136 Query: 159 AEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQR 218 E+ IIRT A+ V + + + + ++ + R + QL + Sbjct: 137 -RLLREKESVIIRTQAKNVDISRIGQELEFYRKKAKLI--RDISHKAIMQLEPKEPCYVS 193 Query: 219 VLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQR 278 +++D+ +++I V Y ++ F ++ +E ++ + +L++VE I R Sbjct: 194 MIKDYVGG-IEKIVVSDIKVYNNIVGFILS--NDLNINVEMIIDKESLENLYEVEKHINR 250 Query: 279 ALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTI----FNTNIEATQAIARQ 334 L + V L+SGG+L+I++TEAMTT+D+N+G +N D I ++TN+EA + I RQ Sbjct: 251 LLSKYVWLESGGFLVIEETEAMTTIDVNSG-----KNTCDCIESSSYSTNLEAAKEIPRQ 305 Query: 335 LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTR 394 ++LRN+GGII+IDFI M ++ HR+ VL L+ SKD V+T+V G++ALGL+E+ RK+T Sbjct: 306 IKLRNIGGIIMIDFIFMKDQVHRKEVLDVLKNGFSKDNVQTTVYGYTALGLMEIARKKTG 365 Query: 395 ESI 397 S+ Sbjct: 366 RSL 368 >UniRef50_A6MVU3 Ribonuclease E n=1 Tax=Rhodomonas salina RepID=A6MVU3_RHDSA Length = 429 Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 113/409 (27%), Positives = 198/409 (48%), Gaps = 13/409 (3%) Query: 17 AYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL-DKAAFLHASDIMP 75 Y + ++ ++ IER +G+IY G V VLP + AAF+ + + F+H +++ Sbjct: 16 VYDNDTVITQLIIERGTYH--IGDIYIGIVETVLPSINAAFIILDYSENNGFIHINNL-- 71 Query: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 G +K+ +I+ + +MVQV+K+P G KG +T DITL RYL +P Sbjct: 72 ------GHLKKKTNSTNITNHLSCNSIVMVQVLKEPNGQKGPTVTGDITLRGRYLTLLPF 125 Query: 136 ASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 + S+ ES L+ + + G +I A + D L W Sbjct: 126 EEDIFFSRDFESNENIVYLRLLFTLLKPKSTGILINKKAIHASINNIIQDFYSLLYEWDS 185 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 + + + +VL+ ++D I VDS+ + + + +I + + Sbjct: 186 ICHNLNYQSAPFLISRNKNFISKVLQKVYSEKVDTILVDSKQGSKKIASTVTRWIKQKNN 245 Query: 256 KL--EHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 L +++ ++++ + L+ ++ L GGY+II++TEA+TT+D+N+G+F Sbjct: 246 TLSIKYFENHNFFVRDYNLDLIVYDLLQSRINLLGGGYIIIEKTEALTTIDVNSGSFNYL 305 Query: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 N +TI N +A + IAR LRLRN+ G+II+DFIDM N+ + +L + L +D Sbjct: 306 NNPRETILLVNRKAAKQIARHLRLRNISGVIIVDFIDMKNQQDQLALLLHFDSFLKQDEQ 365 Query: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 + + FS LGLVE+TRKR S+ + N R + ++ + Y Sbjct: 366 RPRIIQFSELGLVELTRKRQGRSLLEMFSNSNGDLSNRSCISSIVSQSY 414 >UniRef50_UPI0001BC3959 ribonuclease G n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC3959 Length = 386 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 129/390 (33%), Positives = 201/390 (51%), Gaps = 31/390 (7%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T V + DG + IE E I+ NIY GRV++V+P + +AFV+I +L + Sbjct: 14 TAVLFEDGKETEIRVIEEEG--SILNNIYVGRVNKVVPNINSAFVEISKGIICYLPIN-- 69 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYL-VF 132 EE F R ++ V QG ++VQVVKD + TK +T + + +Y+ + Sbjct: 70 ---------EEHVIFLNRKNTDKVCQGDIVLVQVVKDAIKTKRPMVTCKLNISGKYVAIS 120 Query: 133 MPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRV 192 +GVS++I LK ++ EY ++ GFI+RT AE ++ +A L Sbjct: 121 FDNKGIIGVSKKITDSRRIAELKTLLKEYATDEYGFIVRTEAEHADNKDICDEALKLVNE 180 Query: 193 WTKVME-RKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL--EFT-SE 248 + ++ RP G ++ V E D + D YEAL E+T S Sbjct: 181 FEDIVRISSMRPAFTLIKKGGNSVDDMVSSMKLRKE-DEVITDIPEIYEALSDKEYTVSL 239 Query: 249 YIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTG 308 Y M S + L+++E I AL + V LK GGYL+I+QTEA+T +D+NTG Sbjct: 240 YQDTMIS----------LKTLYNIEKIINDALSKYVWLKRGGYLVIEQTEALTVIDVNTG 289 Query: 309 AFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQA 367 + G ++ +DT N+EA + + RQLRLRN+ GI+++DFI+M +D+ + + L Sbjct: 290 KYDGKDKDREDTFLKINMEAAEEVERQLRLRNISGIVVVDFINM-KDDNIKILTDELCTQ 348 Query: 368 LSKDRVKTSVNGFSALGLVEMTRKRTRESI 397 L KD VK ++ LGLVE+TR++ R S+ Sbjct: 349 LKKDIVKCKYVDYTKLGLVEITRQKIRRSL 378 >UniRef50_C7G7S7 Ribonuclease, Rne/Rng family n=2 Tax=Roseburia RepID=C7G7S7_9FIRM Length = 418 Score = 167 bits (424), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 120/401 (29%), Positives = 197/401 (49%), Gaps = 34/401 (8%) Query: 24 LQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGE 83 L E+ E ++GNIY GRV V+ + AAFV I + +L ++ Sbjct: 28 LIEVTTESMTGTSVLGNIYIGRVENVVKNLNAAFVCIAPGQNCYLPLQELKNPIFTKKQS 87 Query: 84 EQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQ 143 E+K G +L+VQVVK+ L TK ++T++T +Y++ G +G S Sbjct: 88 EKKAICA---------GDELLVQVVKEALKTKDPSVSTNLTFTGKYVILTTGKRKIGASS 138 Query: 144 RIESESERERLKKVVAEYCDEQG----GFIIRTAAEGVGEAELASDAAYLKRVWTKVMER 199 ++ E +RE+L K+V ++ + G ++RT A + EL + A L+ K++ Sbjct: 139 KLPKE-KREKLLKIVEDFLSGKEQIPYGVVVRTNAAQASKEELLLELAQLEAEVQKIISG 197 Query: 200 KKRPQTRYQL-YGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS--- 255 K RY L + E Q++L + EL + D R +E + ++ + Sbjct: 198 AKY-LIRYSLVHKEEQPWQKMLNGLYETELGEVVTDDREIFETICNMYGVGAKQLVTGGS 256 Query: 256 --------------KLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 K+ +Y + L + +++ AL +V LKSG YLII TEA+ Sbjct: 257 VRSRVDEILTGHGLKIRYYEDEMVSLSALSGITSQLHDALRERVWLKSGAYLIIQPTEAL 316 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG + + + + NIEA + IARQLRLRN+ GI+I+DFI++ + + Sbjct: 317 TVIDVNTGKNIAKKEMQENFLKVNIEAAEEIARQLRLRNISGIVIVDFINLEAKSAESEL 376 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 L+ AL KD V T + + LGLVE+TRK+ ++S+ L Sbjct: 377 LNVFGAALKKDPVPTQIVEMTKLGLVEVTRKKIKKSLRESL 417 >UniRef50_C9L8D6 Ribonucleases G and E n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L8D6_RUMHA Length = 400 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/363 (27%), Positives = 199/363 (54%), Gaps = 13/363 (3%) Query: 36 GIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISE 95 I+GNIY G+V + +QAAF++I + + S + C ++ + Sbjct: 42 SILGNIYIGKVKNIQKNIQAAFIEI--ENGIMCYYSMAEKASPCFVNVKK--------NN 91 Query: 96 LVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLK 155 +++ G +++VQV K+ + +K +++++ RYLV +G S +++ E E+++++ Sbjct: 92 VLKIGDEMIVQVSKEGIKSKLPYVSSNLNFTGRYLVLTSERKELGFSGKLKKE-EKKQIR 150 Query: 156 KVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELAL 215 +++ + E G I+RT E E+ + L + + V+++ K L + Sbjct: 151 EILKDKIPENVGIIVRTNCRDAQEEEILHELEELMKRYEAVLQKGKSRVCFSVLEKSMPE 210 Query: 216 AQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVEN 274 ++L++ +L+ I D + YE +++ Y + + +Y + P++ L++++ Sbjct: 211 YVQILQNLYSQDLEEIVTDKQELYECAVQYLKGY-KQQEKIVRYYEDKLLPLYKLYNLQK 269 Query: 275 EIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ 334 ++A +V LKSGG+L+I QTEA +D+NTG +++ +T N+EA + IA Q Sbjct: 270 AFEQAQNERVWLKSGGFLVIQQTEAFVCIDVNTGKCTSKKDMQETFRKINLEAAKEIAWQ 329 Query: 335 LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTR 394 LRLRNL GII+IDFI++ + + ++ +L++ L +D +K +V + L +VE+TRK+ R Sbjct: 330 LRLRNLSGIILIDFINLERAEDKEELMQTLQKYLWQDSIKGTVVDMTELNIVEVTRKKVR 389 Query: 395 ESI 397 +S+ Sbjct: 390 KSL 392 >UniRef50_A7VBE5 Putative uncharacterized protein n=3 Tax=cellular organisms RepID=A7VBE5_9CLOT Length = 388 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 111/372 (29%), Positives = 192/372 (51%), Gaps = 20/372 (5%) Query: 34 RRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDI 93 R+ I+ NIY G+V ++ + AAFVDIG + SD + F Sbjct: 31 RQSILSNIYVGKVENIVANIDAAFVDIGTGLPCYYSISD-----------NKHIFLNAKK 79 Query: 94 SELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERER 153 + +++ G +++VQV KD + TK T++I L + L + + +G+S +I + R+ Sbjct: 80 NSVLKAGDEILVQVSKDAIKTKNPVATSEIELKTENL-LVNTSGRIGISGKIRKKETRDH 138 Query: 154 LKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGEL 213 L ++ + G I+RT + + + + SD + L + ++++ K LY Sbjct: 139 LHQLAKRVLPDGFGCILRTVCQELPDETILSDLSELSKQLKQIIQTAKTRTCYSCLYKND 198 Query: 214 A--LAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS-KLEHYTGRQ-PIFDL 269 A L +L+ +A L I D +L ++ + SE ++T KL Y + + L Sbjct: 199 AEYLDYFILK--HNAGLQEIVTDQKLVFDEFAMYLSE--KQITDVKLTMYNDKNCNLLTL 254 Query: 270 FDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQ 329 +++ +++ + +V +KSG YL+I+QTEAM +D+NTG V + ++ + N EA Sbjct: 255 YNLPRDLENLKKERVWMKSGAYLVIEQTEAMVVIDVNTGKSVDKHSFEEHLLRINSEAAV 314 Query: 330 AIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMT 389 + RQLRLRNL GII++DFI+M + LEQ L+KD V + + L LVE+T Sbjct: 315 EVCRQLRLRNLSGIIVVDFINMKQPGSMDVIKDILEQELAKDSVPAAFVDVTKLSLVELT 374 Query: 390 RKRTRESIEHVL 401 RK+ R+S++ L Sbjct: 375 RKKIRKSLKEQL 386 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0A9J2 Ribonuclease G n=523 Tax=cellular organisms RepI... 679 0.0 UniRef50_Q1QX63 Ribonuclease E n=5 Tax=Gammaproteobacteria RepID... 628 e-178 UniRef50_Q2P196 Ribonuclease E n=28 Tax=Proteobacteria RepID=Q2P... 624 e-177 UniRef50_Q0VQP0 Phosphoric diester hydrolase n=5 Tax=Gammaproteo... 621 e-176 UniRef50_Q0A8Q8 Ribonuclease E n=8 Tax=Gammaproteobacteria RepID... 617 e-175 UniRef50_Q0ABM4 Ribonuclease G n=2 Tax=Proteobacteria RepID=Q0AB... 616 e-175 UniRef50_A3JIF1 Ribonucleases G and E n=2 Tax=Gammaproteobacteri... 609 e-173 UniRef50_C8PW15 Ribonuclease E n=1 Tax=Enhydrobacter aerosaccus ... 605 e-171 UniRef50_C5BU48 Ribonuclease E n=1 Tax=Teredinibacter turnerae T... 604 e-171 UniRef50_Q1YTQ8 Ribonuclease E n=1 Tax=gamma proteobacterium HTC... 599 e-170 UniRef50_Q2SK60 Ribonucleases G and E n=3 Tax=Gammaproteobacteri... 599 e-170 UniRef50_A6VXP7 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteo... 598 e-169 UniRef50_C7RBE6 Ribonuclease, Rne/Rng family n=1 Tax=Kangiella k... 596 e-169 UniRef50_B5EL09 Ribonuclease, Rne/Rng family n=2 Tax=Acidithioba... 595 e-168 UniRef50_Q1K0W4 Ribonuclease, Rne/Rng family n=1 Tax=Desulfuromo... 594 e-168 UniRef50_B0BR35 Ribonuclease E n=14 Tax=Pasteurellaceae RepID=B0... 593 e-168 UniRef50_A8FWL8 Ribonuclease, Rne/Rng family n=38 Tax=Gammaprote... 591 e-167 UniRef50_C1DR24 Ribonuclease E n=27 Tax=Gammaproteobacteria RepI... 590 e-167 UniRef50_Q7MM07 Ribonuclease E n=15 Tax=Gammaproteobacteria RepI... 590 e-167 UniRef50_C4X6M8 RNase E n=25 Tax=Gammaproteobacteria RepID=C4X6M... 590 e-167 UniRef50_B5JUW5 Ribonuclease E n=1 Tax=gamma proteobacterium HTC... 589 e-167 UniRef50_C8W5Q7 Ribonuclease, Rne/Rng family n=11 Tax=Bacteria R... 588 e-166 UniRef50_A9ADG1 Ribonuclease, Rne/Rng family n=89 Tax=Betaproteo... 587 e-166 UniRef50_D0L1K6 Ribonuclease, Rne/Rng family n=1 Tax=Halothiobac... 587 e-166 UniRef50_P21513 Ribonuclease E n=119 Tax=Gammaproteobacteria Rep... 586 e-166 UniRef50_A5WCP3 RNAse E n=3 Tax=Proteobacteria RepID=A5WCP3_PSYWF 585 e-165 UniRef50_C6MTB8 Ribonuclease, Rne/Rng family n=1 Tax=Geobacter s... 584 e-165 UniRef50_A4A8E4 Ribonuclease E n=5 Tax=unclassified Gammaproteob... 584 e-165 UniRef50_C6E0U6 Ribonuclease, Rne/Rng family n=8 Tax=Desulfuromo... 582 e-165 UniRef50_C5AD76 Ribonuclease E n=21 Tax=Proteobacteria RepID=C5A... 581 e-164 UniRef50_C8N8A8 Ribonuclease G and E n=19 Tax=Proteobacteria Rep... 581 e-164 UniRef50_P44443 Ribonuclease E n=98 Tax=Gammaproteobacteria RepI... 581 e-164 UniRef50_A7C082 Ribonuclease G and E n=1 Tax=Beggiatoa sp. PS Re... 580 e-164 UniRef50_Q2YA54 Ribonuclease E n=7 Tax=Betaproteobacteria RepID=... 579 e-164 UniRef50_D0LZK2 Ribonuclease, Rne/Rng family n=1 Tax=Haliangium ... 579 e-164 UniRef50_A8L1W0 Ribonuclease, Rne/Rng family n=25 Tax=Actinobact... 579 e-163 UniRef50_B4RR31 Rne n=31 Tax=Neisseriaceae RepID=B4RR31_NEIG2 578 e-163 UniRef50_Q3A2X7 Ribonuclease E n=3 Tax=Bacteria RepID=Q3A2X7_PELCD 576 e-163 UniRef50_A0LIP4 RNAse G n=22 Tax=Bacteria RepID=A0LIP4_SYNFM 575 e-163 UniRef50_C1A932 Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca T... 575 e-163 UniRef50_Q0F3G3 Ribonucleases G and E n=1 Tax=Mariprofundus ferr... 575 e-162 UniRef50_C8WCX7 Ribonuclease, Rne/Rng family n=3 Tax=Zymomonas m... 575 e-162 UniRef50_A5EVP9 Ribonuclease g n=16 Tax=Gammaproteobacteria RepI... 575 e-162 UniRef50_Q2RSE6 RNAse E n=1 Tax=Rhodospirillum rubrum ATCC 11170... 575 e-162 UniRef50_Q1PY04 Strongly similar to ribonuclease E (RNase E) n=1... 574 e-162 UniRef50_A8PMW2 Ribonuclease E (RNase E) n=1 Tax=Rickettsiella g... 572 e-161 UniRef50_B8FM65 Ribonuclease, Rne/Rng family n=1 Tax=Desulfatiba... 571 e-161 UniRef50_C0VHW5 Ribonuclease E (RNase E): endoribonuclease for r... 570 e-161 UniRef50_A1HNZ2 Ribonuclease, Rne/Rng family n=1 Tax=Thermosinus... 570 e-161 UniRef50_B0VED2 Ribonuclease E (RNase E): endoribonuclease for r... 570 e-161 UniRef50_C9R616 Ribonuclease E (RNase E) n=2 Tax=Gammaproteobact... 569 e-161 UniRef50_B8IYX2 Ribonuclease, Rne/Rng family n=10 Tax=Desulfovib... 569 e-160 UniRef50_Q6FEY0 Ribonuclease E (RNase E): endoribonuclease for r... 568 e-160 UniRef50_B6BTS7 Ribonuclease E n=2 Tax=Betaproteobacteria RepID=... 565 e-159 UniRef50_D1AAW2 Ribonuclease, Rne/Rng family n=1 Tax=Thermomonos... 564 e-159 UniRef50_Q492Q0 Ribonuclease E n=1 Tax=Candidatus Blochmannia pe... 563 e-159 UniRef50_A8ZW09 Ribonuclease, Rne/Rng family n=2 Tax=Desulfobact... 563 e-159 UniRef50_D2SCS1 Ribonuclease, Rne/Rng family n=39 Tax=Bacteria R... 562 e-159 UniRef50_B4RCR6 Ribonuclease, Rne/Rng family protein n=4 Tax=Alp... 562 e-159 UniRef50_Q1NUM8 Ribonuclease E and G n=2 Tax=Deltaproteobacteria... 562 e-158 UniRef50_C7Q8B4 Ribonuclease, Rne/Rng family n=1 Tax=Catenulispo... 561 e-158 UniRef50_B3DX65 Ribonuclease G and E n=7 Tax=Verrucomicrobia Rep... 561 e-158 UniRef50_A6GBN9 Ribonuclease G n=1 Tax=Plesiocystis pacifica SIR... 561 e-158 UniRef50_A0LJB4 RNAse E n=1 Tax=Syntrophobacter fumaroxidans MPO... 560 e-158 UniRef50_C7MPQ3 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycet... 558 e-157 UniRef50_B0SXB4 Ribonuclease, Rne/Rng family n=2 Tax=Alphaproteo... 557 e-157 UniRef50_UPI0001C430FE cytosolic axial filament protein n=1 Tax=... 557 e-157 UniRef50_A4XJ17 Ribonuclease G n=7 Tax=Clostridia RepID=A4XJ17_C... 556 e-157 UniRef50_B8GWM7 Ribonuclease E n=6 Tax=Caulobacteraceae RepID=B8... 556 e-157 UniRef50_D2PUT1 Ribonuclease, Rne/Rng family n=1 Tax=Kribbella f... 555 e-157 UniRef50_C9KMZ9 Ribonuclease G n=2 Tax=Veillonellaceae RepID=C9K... 555 e-156 UniRef50_D2R4N9 Ribonuclease, Rne/Rng family n=2 Tax=Planctomyce... 555 e-156 UniRef50_B3T2A0 Putative S1 RNA-binding domain protein n=2 Tax=p... 555 e-156 UniRef50_Q2LU58 Ribonuclease E n=1 Tax=Syntrophus aciditrophicus... 554 e-156 UniRef50_A4F9K3 Ribonuclease, Rne/Rng family n=1 Tax=Saccharopol... 551 e-155 UniRef50_B2GGD5 Putative ribonuclease n=1 Tax=Kocuria rhizophila... 550 e-155 UniRef50_B5JNK0 Ribonuclease, Rne/Rng family n=1 Tax=Verrucomicr... 549 e-155 UniRef50_D1BDM1 Ribonuclease, Rne/Rng family n=1 Tax=Sanguibacte... 549 e-155 UniRef50_D1BV45 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycet... 549 e-154 UniRef50_A0JXK2 Ribonuclease, Rne/Rng family n=4 Tax=Actinomycet... 548 e-154 UniRef50_B0VJP4 Ribonuclease G n=1 Tax=Candidatus Cloacamonas ac... 548 e-154 UniRef50_D1SD19 Ribonuclease, Rne/Rng family n=1 Tax=Micromonosp... 547 e-154 UniRef50_C4RPB5 Ribonuclease Rne/Rng n=1 Tax=Micromonospora sp. ... 547 e-154 UniRef50_Q8K9J9 Ribonuclease E n=5 Tax=Buchnera aphidicola RepID... 546 e-154 UniRef50_B8HA23 Ribonuclease, Rne/Rng family n=1 Tax=Arthrobacte... 546 e-154 UniRef50_A4AGL0 Ribonuclease G n=3 Tax=Actinobacteria (class) Re... 545 e-153 UniRef50_A8M0Z2 Ribonuclease, Rne/Rng family n=2 Tax=Salinispora... 544 e-153 UniRef50_A3EQR7 Ribonucleases G and E n=3 Tax=Leptospirillum Rep... 543 e-153 UniRef50_D0LAJ7 Ribonuclease, Rne/Rng family n=1 Tax=Gordonia br... 542 e-152 UniRef50_C7NH23 RNAse G n=1 Tax=Kytococcus sedentarius DSM 20547... 541 e-152 UniRef50_C7QYR2 Ribonuclease, Rne/Rng family n=1 Tax=Jonesia den... 540 e-152 UniRef50_D2NSV3 Ribonuclease G and E n=2 Tax=Rothia mucilaginosa... 539 e-151 UniRef50_B2KEH9 Ribonuclease, Rne/Rng family n=1 Tax=Elusimicrob... 538 e-151 UniRef50_D0WNB8 Putative S1 RNA binding domain protein n=1 Tax=A... 537 e-151 UniRef50_Q1MQA2 Ribonucleases G and E n=2 Tax=Desulfovibrionacea... 534 e-150 UniRef50_C8XF15 Ribonuclease, Rne/Rng family n=1 Tax=Nakamurella... 533 e-150 UniRef50_B8DIL9 Ribonuclease, Rne/Rng family n=3 Tax=Desulfovibr... 533 e-150 UniRef50_C5CAZ2 Ribonuclease, Rne/Rng family n=1 Tax=Micrococcus... 533 e-150 UniRef50_UPI0001C31D95 ribonuclease, Rne/Rng family n=1 Tax=Cone... 532 e-150 UniRef50_B2HMG4 Ribonuclease E Rne n=28 Tax=Mycobacterium RepID=... 532 e-149 UniRef50_C4K6Y9 RNase G (Ribonuclease G) n=2 Tax=Enterobacteriac... 532 e-149 UniRef50_UPI0001BC2E10 putative ribonuclease n=1 Tax=Brevibacter... 531 e-149 UniRef50_D1N7U6 Ribonuclease, Rne/Rng family n=2 Tax=Lentisphaer... 530 e-149 UniRef50_Q6AIU3 Probable RNAse E n=1 Tax=Desulfotalea psychrophi... 529 e-149 UniRef50_C0VZF1 Ribonuclease E n=1 Tax=Actinomyces coleocanis DS... 528 e-148 UniRef50_B0TYI3 Ribonuclease E n=18 Tax=Francisella RepID=B0TYI3... 528 e-148 UniRef50_A0R152 Ribonuclease, Rne/Rng family protein n=9 Tax=Cor... 527 e-148 UniRef50_C2KPN3 Ribonuclease G n=3 Tax=Actinomycetaceae RepID=C2... 527 e-148 UniRef50_A6WDN2 Ribonuclease, Rne/Rng family n=1 Tax=Kineococcus... 526 e-148 UniRef50_C2BMV7 Ribonuclease E n=3 Tax=Corynebacterium RepID=C2B... 525 e-147 UniRef50_C0XRI1 Ribonuclease E (Fragment) n=2 Tax=Corynebacteriu... 523 e-147 UniRef50_C4PNX0 Ribonuclease E n=17 Tax=Chlamydiales RepID=C4PNX... 522 e-147 UniRef50_Q1D0P4 Ribonuclease, Rne/Rng family n=7 Tax=Proteobacte... 522 e-146 UniRef50_D1Y9V9 S1 RNA binding domain protein n=3 Tax=Propioniba... 521 e-146 UniRef50_C5VAX0 Ribonuclease E n=5 Tax=Corynebacterium RepID=C5V... 520 e-146 UniRef50_B8CXZ3 Ribonuclease, Rne/Rng family n=1 Tax=Halothermot... 519 e-146 UniRef50_B0UJB2 Ribonuclease, Rne/Rng family n=4 Tax=Methylobact... 518 e-145 UniRef50_B6JHD4 Ribonuclease E (RNase E) n=19 Tax=Alphaproteobac... 516 e-145 UniRef50_C8NQN5 Ribonuclease E n=5 Tax=Corynebacterium RepID=C8N... 516 e-145 UniRef50_D1B5Z1 Ribonuclease, Rne/Rng family n=3 Tax=Synergistac... 515 e-144 UniRef50_C3PI06 Ribonuclease E n=3 Tax=Corynebacterium RepID=C3P... 515 e-144 UniRef50_A3VT88 Ribonuclease E n=1 Tax=Parvularcula bermudensis ... 514 e-144 UniRef50_A7HQG8 Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculu... 514 e-144 UniRef50_B6INB6 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenu... 514 e-144 UniRef50_B1H0J1 Ribonuclease G n=1 Tax=uncultured Termite group ... 513 e-144 UniRef50_B1VGM2 Ribonuclease E n=1 Tax=Corynebacterium urealytic... 513 e-144 UniRef50_D2LHL1 Ribonuclease, Rne/Rng family n=1 Tax=Rhodomicrob... 512 e-143 UniRef50_A8MHL2 Ribonuclease, Rne/Rng family n=2 Tax=Alkaliphilu... 510 e-143 UniRef50_A8IFL2 Ribonuclease E and G n=6 Tax=Rhizobiales RepID=A... 510 e-143 UniRef50_Q2IVP9 RNAse E n=3 Tax=Bradyrhizobiaceae RepID=Q2IVP9_R... 508 e-142 UniRef50_B0TWF6 Ribonuclease G n=17 Tax=Francisella RepID=B0TWF6... 507 e-142 UniRef50_Q3J4J9 RNAse E n=6 Tax=Rhodobacteraceae RepID=Q3J4J9_RHOS4 507 e-142 UniRef50_Q0BVH1 Ribonuclease E n=2 Tax=Acetobacteraceae RepID=Q0... 507 e-142 UniRef50_Q1IRN1 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 506 e-142 UniRef50_Q0AWI9 RNAse G n=1 Tax=Syntrophomonas wolfei subsp. wol... 506 e-142 UniRef50_Q92QJ4 Probable ribonuclease E n=1 Tax=Sinorhizobium me... 506 e-142 UniRef50_C1F7B7 Ribonuclease, Rne/Rng family, insertion n=2 Tax=... 506 e-141 UniRef50_C9RQU1 Ribonuclease, Rne/Rng family n=1 Tax=Fibrobacter... 505 e-141 UniRef50_B8DVT8 Ribonuclease G n=7 Tax=Bifidobacterium RepID=B8D... 505 e-141 UniRef50_C6QC83 Ribonuclease, Rne/Rng family n=1 Tax=Hyphomicrob... 505 e-141 UniRef50_C0WDS2 Ribonuclease n=1 Tax=Acidaminococcus sp. D21 Rep... 505 e-141 UniRef50_A1AW88 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteo... 505 e-141 UniRef50_Q7CZH1 Ribonuclease E n=7 Tax=Alphaproteobacteria RepID... 504 e-141 UniRef50_A9ESZ7 Ribonuclease G n=1 Tax=Sorangium cellulosum 'So ... 504 e-141 UniRef50_A6LDG7 Ribonuclease G n=21 Tax=Bacteria RepID=A6LDG7_PARD8 503 e-141 UniRef50_D2RM73 Ribonuclease, Rne/Rng family n=1 Tax=Acidaminoco... 502 e-140 UniRef50_D1BNE2 Ribonuclease, Rne/Rng family n=3 Tax=Veillonella... 502 e-140 UniRef50_B9JVK9 Ribonuclease E n=40 Tax=Rhizobiales RepID=B9JVK9... 502 e-140 UniRef50_Q9K8J2 Ribonuclease G (Cytosolic axial filament protein... 502 e-140 UniRef50_B5ZYQ5 Ribonuclease, Rne/Rng family n=7 Tax=Alphaproteo... 502 e-140 UniRef50_B5ZDP7 Ribonuclease, Rne/Rng family n=12 Tax=Alphaprote... 501 e-140 UniRef50_B9JDP7 Ribonuclease E protein n=3 Tax=Alphaproteobacter... 501 e-140 UniRef50_B8EPB2 Ribonuclease, Rne/Rng family n=1 Tax=Methylocell... 501 e-140 UniRef50_Q4JWU2 Ribonuclease E n=2 Tax=Corynebacterium jeikeium ... 501 e-140 UniRef50_C4LJU7 Ribonuclease E n=1 Tax=Corynebacterium kroppenst... 500 e-140 UniRef50_C0R3W8 Ribonuclease, Rne/Rng family protein n=9 Tax=Wol... 500 e-140 UniRef50_Q01YX3 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 500 e-140 UniRef50_C6D805 Ribonuclease, Rne/Rng family n=3 Tax=Bacillales ... 499 e-139 UniRef50_UPI00003842F2 COG1530: Ribonucleases G and E n=1 Tax=Ma... 498 e-139 UniRef50_C6JJB6 Ribonuclease G and E n=2 Tax=Fusobacterium RepID... 496 e-139 UniRef50_Q0G6Z6 Ribonuclease E and G n=2 Tax=Rhizobiales RepID=Q... 496 e-138 UniRef50_D2RC82 S1 RNA binding domain protein n=8 Tax=Bifidobact... 495 e-138 UniRef50_C6ADR1 Ribonuclease E n=5 Tax=Rhizobiales RepID=C6ADR1_... 495 e-138 UniRef50_A3ZLB1 Ribonuclease E n=4 Tax=Planctomycetaceae RepID=A... 492 e-138 UniRef50_C0ZAL2 Putative ribonuclease G n=1 Tax=Brevibacillus br... 491 e-137 UniRef50_Q11NU1 Ribonuclease G n=10 Tax=Bacteroidetes RepID=Q11N... 489 e-136 UniRef50_A6CTK6 Cytosolic axial filament protein n=1 Tax=Bacillu... 488 e-136 UniRef50_Q8DL99 Ribonuclease E n=3 Tax=Chroococcales RepID=Q8DL9... 487 e-136 UniRef50_Q2JW46 Ribonuclease, Rne/Rng family n=4 Tax=Synechococc... 486 e-136 UniRef50_A7H8A5 Ribonuclease, Rne/Rng family n=1 Tax=Anaeromyxob... 485 e-135 UniRef50_Q2G5W8 Ribonuclease E n=8 Tax=cellular organisms RepID=... 485 e-135 UniRef50_C7LYB0 Ribonuclease, Rne/Rng family n=1 Tax=Acidimicrob... 483 e-135 UniRef50_Q31PW1 Ribonuclease, Rne/Rng family n=19 Tax=Cyanobacte... 483 e-135 UniRef50_Q2S597 Ribonuclease, Rne/Rng family subfamily n=1 Tax=S... 481 e-134 UniRef50_A5WCI8 RNAse G n=4 Tax=Moraxellaceae RepID=A5WCI8_PSYWF 481 e-134 UniRef50_Q0C4E1 Ribonuclease, Rne/Rng family n=2 Tax=Hyphomonada... 481 e-134 UniRef50_A8LRP5 Ribonuclease n=35 Tax=Rhodobacterales RepID=A8LR... 480 e-134 UniRef50_B0K422 Ribonuclease, Rne/Rng family n=12 Tax=Thermoanae... 478 e-133 UniRef50_C1PAJ8 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus co... 477 e-133 UniRef50_C5CEM0 Ribonuclease, Rne/Rng family n=1 Tax=Kosmotoga o... 474 e-132 UniRef50_P72656 Ribonuclease E homolog n=10 Tax=Cyanobacteria Re... 472 e-131 UniRef50_B1I4P9 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 472 e-131 UniRef50_D2LS23 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus ce... 471 e-131 UniRef50_Q5WES2 Ribonuclease G n=1 Tax=Bacillus clausii KSM-K16 ... 471 e-131 UniRef50_C3W9J7 Ribonuclease G and E n=1 Tax=Fusobacterium morti... 470 e-131 UniRef50_Q0FAK9 Ribonuclease, Rne/Rng family protein n=1 Tax=Rho... 469 e-130 UniRef50_A0L8J1 Ribonuclease E n=1 Tax=Magnetococcus sp. MC-1 Re... 469 e-130 UniRef50_Q83MU7 Ribonuclease G n=2 Tax=Tropheryma whipplei RepID... 468 e-130 UniRef50_Q89AH3 Putative truncated ribonuclease E n=22 Tax=Bacte... 466 e-129 UniRef50_D1I512 Whole genome shotgun sequence of line PN40024, s... 465 e-129 UniRef50_B6YQX9 Ribonuclease G n=23 Tax=Bacteroidales RepID=B6YQ... 465 e-129 UniRef50_Q7U4C5 Ribonuclease E n=16 Tax=cellular organisms RepID... 463 e-129 UniRef50_C9LKU5 Cytoplasmic axial filament protein n=1 Tax=Diali... 461 e-128 UniRef50_A8GXM7 Ribonuclease E n=15 Tax=cellular organisms RepID... 459 e-127 UniRef50_C9M9G5 Ribonuclease G n=1 Tax=Jonquetella anthropi E3_3... 457 e-127 UniRef50_A5FJP9 Ribonuclease, Rne/Rng family n=29 Tax=Bacteroide... 456 e-127 UniRef50_A8F3K6 Ribonuclease, Rne/Rng family n=1 Tax=Thermotoga ... 450 e-125 UniRef50_Q2GES6 Ribonuclease, Rne/Rng family n=2 Tax=Neoricketts... 449 e-124 UniRef50_Q2B6H0 Cytosolic axial filament protein n=1 Tax=Bacillu... 447 e-124 UniRef50_A8UTH4 Cytoplasmic axial filament protein n=1 Tax=Hydro... 445 e-123 UniRef50_A9VIS0 Ribonuclease, Rne/Rng family n=78 Tax=Bacillus R... 444 e-123 UniRef50_A5CEM7 Ribonuclease E n=2 Tax=Orientia tsutsugamushi Re... 443 e-122 UniRef50_A2BYM7 S1 RNA binding domain:Ribonuclease E and G n=8 T... 442 e-122 UniRef50_B3QZC2 Ribonuclease, Rne/Rng family n=12 Tax=Chlorobiac... 436 e-121 UniRef50_B2V9I2 Ribonuclease, Rne/Rng family n=4 Tax=Hydrogenoth... 432 e-119 UniRef50_B1LBB5 Ribonuclease, Rne/Rng family n=6 Tax=Thermotogac... 426 e-117 UniRef50_A6LNV2 Ribonuclease, Rne/Rng family n=2 Tax=Thermosipho... 426 e-117 UniRef50_Q2GKZ9 Ribonuclease, Rne/Rng family n=10 Tax=Anaplasmat... 425 e-117 UniRef50_A5I670 Ribonuclease G n=12 Tax=Clostridium RepID=A5I670... 424 e-117 UniRef50_A9BIJ0 RNA binding S1 domain protein n=1 Tax=Petrotoga ... 423 e-117 UniRef50_C5EUP6 Ribonuclease G n=1 Tax=Clostridiales bacterium 1... 422 e-116 UniRef50_A8RTZ4 Putative uncharacterized protein n=1 Tax=Clostri... 422 e-116 UniRef50_C9XNN6 Ribonuclease g n=8 Tax=Clostridium RepID=C9XNN6_... 419 e-115 UniRef50_D0JBK5 Ribonuclease G n=2 Tax=Blattabacterium RepID=D0J... 418 e-115 UniRef50_A9KMH0 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium... 416 e-115 UniRef50_A9RK39 Predicted protein n=1 Tax=Physcomitrella patens ... 414 e-114 UniRef50_A5ZQK1 Putative uncharacterized protein n=2 Tax=Clostri... 413 e-113 UniRef50_C0D9K4 Putative uncharacterized protein n=2 Tax=Clostri... 411 e-113 UniRef50_P51211 Ribonuclease E homolog n=2 Tax=Porphyra RepID=RN... 408 e-112 UniRef50_Q8GZQ4 Endoribonuclease n=8 Tax=core eudicotyledons Rep... 407 e-112 UniRef50_C6LLP4 Cytoplasmic axial filament protein n=1 Tax=Bryan... 403 e-110 UniRef50_Q3AF57 Ribonuclease, Rne/Rng family n=1 Tax=Carboxydoth... 402 e-110 UniRef50_C3WSU7 Ribonuclease G n=6 Tax=Fusobacterium RepID=C3WSU... 402 e-110 UniRef50_UPI0001973AFC ribonuclease n=1 Tax=Clostridium sp. M62/... 401 e-110 UniRef50_C6J9J6 Putative uncharacterized protein n=1 Tax=Ruminoc... 399 e-110 UniRef50_C0ERY0 Putative uncharacterized protein n=1 Tax=Eubacte... 397 e-109 UniRef50_A6LQR5 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium... 396 e-109 UniRef50_Q1V2D3 Ribonuclease E/G n=5 Tax=Bacteria RepID=Q1V2D3_P... 396 e-108 UniRef50_Q97JL8 Ribonucleases G/E family protein n=1 Tax=Clostri... 395 e-108 UniRef50_C5RGP2 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium... 392 e-107 UniRef50_A8VZD2 Alanine racemase n=1 Tax=Bacillus selenitireduce... 391 e-107 UniRef50_Q0SR50 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium... 390 e-107 UniRef50_A7HJB9 Ribonuclease, Rne/Rng family n=1 Tax=Fervidobact... 389 e-106 UniRef50_D0MD03 Ribonuclease, Rne/Rng family n=1 Tax=Rhodothermu... 389 e-106 UniRef50_Q9M498 Endoribonuclease E (Fragment) n=6 Tax=Magnolioph... 388 e-106 UniRef50_C3WHH5 Ribonuclease G n=4 Tax=Fusobacterium RepID=C3WHH... 388 e-106 UniRef50_Q6B930 Ribonuclease E n=1 Tax=Gracilaria tenuistipitata... 384 e-105 UniRef50_A0Q1T9 Ribonuclease G n=4 Tax=Clostridium RepID=A0Q1T9_... 373 e-102 UniRef50_A7B8M6 Putative uncharacterized protein n=4 Tax=Clostri... 371 e-101 UniRef50_B6INE9 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenu... 371 e-101 UniRef50_O67311 Cytoplasmic axial filament protein n=1 Tax=Aquif... 367 e-100 UniRef50_B7ANV1 Putative uncharacterized protein n=1 Tax=Bactero... 366 1e-99 UniRef50_C7G7S7 Ribonuclease, Rne/Rng family n=2 Tax=Roseburia R... 359 1e-97 UniRef50_C9L8D6 Ribonucleases G and E n=1 Tax=Blautia hansenii D... 358 2e-97 UniRef50_A7VBE5 Putative uncharacterized protein n=3 Tax=cellula... 357 5e-97 UniRef50_A6MVU3 Ribonuclease E n=1 Tax=Rhodomonas salina RepID=A... 356 2e-96 UniRef50_A4TUF8 Ribonucleases G and E n=1 Tax=Magnetospirillum g... 349 2e-94 UniRef50_D2MIS5 Ribonuclease, Rne/Rng family (Fragment) n=1 Tax=... 348 3e-94 UniRef50_A0AIZ2 Complete genome n=21 Tax=Listeria RepID=A0AIZ2_L... 343 9e-93 UniRef50_C0BCI6 Putative uncharacterized protein n=1 Tax=Coproco... 342 2e-92 Sequences not found previously or not previously below threshold: >UniRef50_P0A9J2 Ribonuclease G n=523 Tax=cellular organisms RepID=RNG_ECO57 Length = 489 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 489/489 (100%), Positives = 489/489 (100%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI Sbjct: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT Sbjct: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA Sbjct: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE Sbjct: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM Sbjct: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV Sbjct: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV Sbjct: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN Sbjct: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 Query: 481 QEQFDVVMM 489 QEQFDVVMM Sbjct: 481 QEQFDVVMM 489 >UniRef50_Q1QX63 Ribonuclease E n=5 Tax=Gammaproteobacteria RepID=Q1QX63_CHRSD Length = 1175 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 168/490 (34%), Positives = 270/490 (55%), Gaps = 9/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE AR NIY+GR++R+ P ++AAFVD G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGRITRIEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + +I E++++GQ+++VQV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEISREYFTKEPSGR-----PNIKEVLKEGQEVIVQVDKEERGNKGAALTT 116 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L R+LV MP G+S+RIE + +R +LK + + ++ G I+RTA G Sbjct: 117 FISLAGRFLVLMPNNPRAGGISRRIEGD-DRAQLKDAMGQLTVPDKMGVIVRTAGIGRSP 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL +VW + E + + +Y E + R +RD+ ++ + +DS + Sbjct: 176 EELQWDMDYLVQVWEAITEEAGKRSAPFLIYRESNVIIRAMRDYLRHDIGEVLIDSPEVH 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E L F + +P +K++ Y P+F F +E++I+ A +R+V+L SGG ++ID TEA Sbjct: 236 EEALHFIRQVMPSYQNKIKLYADDVPLFSRFQIESQIETAYQREVKLPSGGAVVIDHTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T TN+EA IARQLRLR++GG+++IDFIDM ++R Sbjct: 296 LVSIDINSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPAKNQRE 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + AL DR + + S GL+EM+R+R R S+ CP C+G+GT++ V + Sbjct: 356 VENRVRDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRS 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR I S + VA L E+ L ++E G QV + P Sbjct: 416 ISLSIMRLIEEEAMKERSSQIRAILPVPVATYLLNEKRSVLNDIEQRQGVQVVLLPNPDM 475 Query: 480 NQEQFDVVMM 489 + +DV + Sbjct: 476 DTPHYDVQRL 485 >UniRef50_Q2P196 Ribonuclease E n=28 Tax=Proteobacteria RepID=Q2P196_XANOM Length = 1240 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 179/490 (36%), Positives = 275/490 (56%), Gaps = 8/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L +I IE+ ++ NIYKGR++R+ P ++AAFVD G Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + K I EL+R+GQ+++VQV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEISRDYFQAGVDHNKS----TIRELLREGQEIVVQVDKEERGNKGAALTT 117 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RY+V MP + GVS+RIE E +R LK+ + + + G IIRTA G Sbjct: 118 FISLAGRYMVLMPNSPSAGGVSRRIEGE-DRAALKEALDKLDIPDDMGVIIRTAGVGRDA 176 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL + W + E + +Y E L R LRD+ A++ I VD+ Y Sbjct: 177 EELQWDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELY 236 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 EF + +P+ KL+HYT P+F+ F +E++I+ A ER V L SGG +++DQTEA Sbjct: 237 ADAQEFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEA 296 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T VD+N+ ++++T F TN+EA + +ARQLRLR+LGG+++IDFIDM + H+R Sbjct: 297 LTAVDVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQRE 356 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L+ AL DR + + S GL+EM+R+R R S+ CP C G G +++VE+ Sbjct: 357 VENKLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVES 416 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R ++ + LV A +A L E+ +L E+E + + + Sbjct: 417 LSLSIIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQL 476 Query: 480 NQEQFDVVMM 489 + ++V + Sbjct: 477 HTPHYEVTRL 486 >UniRef50_Q0VQP0 Phosphoric diester hydrolase n=5 Tax=Gammaproteobacteria RepID=Q0VQP0_ALCBS Length = 1074 Score = 621 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 163/490 (33%), Positives = 268/490 (54%), Gaps = 6/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE R NIYKG+++RV P ++AAFVD G Sbjct: 2 KRMLINATHPEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + + +I E++++GQ+++VQV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEISRQ--YFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEERGNKGAALTT 119 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S+RIE E ER +LK+ + ++ G I+RTA G Sbjct: 120 FISLAGRYLVLMPNNPRAGGISRRIEGE-ERAQLKEALGALNIPDEMGVIVRTAGLGRSA 178 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++WT + + + + + +Y E + R +RD+ ++ + +DS+ Y Sbjct: 179 EELQWDLNYLLKLWTSIDDASQDRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSKKVY 238 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + F + + + K++ Y P+F F +E++I+ A ER+V+L SGG ++ID TEA Sbjct: 239 DEAQGFVQQVMQDFQHKIKLYDDETPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEA 298 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T TN+EA + IARQLRLR++GG+I++DFIDM ++R Sbjct: 299 LVSIDINSSRATKGADIEETALQTNLEAAEEIARQLRLRDIGGLIVVDFIDMGPARNQRD 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + AL DR + + S GL+E++R+R R S+ CP C G+G ++ V++ Sbjct: 359 VENRMRDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGQGHIRDVKS 418 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R I + AVA L E+ L +E +V + Sbjct: 419 LALSILRLIEEEVMKERTGEIQAQVPVAVATYLLNEKRDPLRAIEKNHKVRVVIIPNQNL 478 Query: 480 NQEQFDVVMM 489 + F+V + Sbjct: 479 DTPHFEVERI 488 >UniRef50_Q0A8Q8 Ribonuclease E n=8 Tax=Gammaproteobacteria RepID=Q0A8Q8_ALHEH Length = 1073 Score = 617 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 172/490 (35%), Positives = 268/490 (54%), Gaps = 6/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE AR NIYKG ++RV P ++AAFV G Sbjct: 2 KRMLINATQPEELRVALVDGQQLYDLDIETPAREQKKANIYKGTITRVEPSLEAAFVQYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I P + I + VR+GQ+++VQV K+ GTKGA LTT Sbjct: 62 AERHGFLPFKEIAPSYYREGLKADGGRP--SIRDAVREGQEVVVQVDKEERGTKGAALTT 119 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP GVS+RIE S+R +++ + + E G I+RTA G Sbjct: 120 YISLAGRYLVLMPNNPRAGGVSRRIEG-SDRAEIREALRQLDVPEGMGLIVRTAGVGRTV 178 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++W+ + + + + +Y E + R LRD+ +++ I +D + Sbjct: 179 EELQWDLDYLLKLWSAIQKAAEARSAPFLIYQESDVIIRALRDYLRSDIGEILIDDPQVF 238 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E +EF + +P KL++Y R P+F + +E++I+ A +R V L SGG ++ID TEA Sbjct: 239 EKAVEFVEQVMPYNRQKLKYYDDRVPLFTRYQIESQIESAFQRDVRLPSGGAIVIDHTEA 298 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T +TN+EA IARQLRLR+LGG+I+IDFIDM ++R Sbjct: 299 LISIDINSARATKGSDIEETALHTNLEAADEIARQLRLRDLGGLIVIDFIDMGPNRNQRE 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L +A+ DR + + S GL+EM+R+R R S+ C C G+GTV++VE+ Sbjct: 359 VENRLREAVKADRARVQIGRISRFGLLEMSRQRLRSSLGESHQEVCARCGGQGTVRSVES 418 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R + + L VA L E+ S++E+E V + Sbjct: 419 LALSILRIVEEEAMKEKTGTVLAQLPVDVATFLLNEKRPSISEIEDRHRVAVVLIPNRTM 478 Query: 480 NQEQFDVVMM 489 +DV + Sbjct: 479 ETPHYDVQRL 488 >UniRef50_Q0ABM4 Ribonuclease G n=2 Tax=Proteobacteria RepID=Q0ABM4_ALHEH Length = 492 Score = 616 bits (1589), Expect = e-175, Method: Composition-based stats. Identities = 274/492 (55%), Positives = 365/492 (74%), Gaps = 3/492 (0%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E+L+NVTP ETRVA ++ G+LQE+H+ER RRG+VGN+YKGRV RVLPGMQAAF++ Sbjct: 1 MAQEILINVTPRETRVALVENGVLQELHLERARRRGLVGNLYKGRVVRVLPGMQAAFIEA 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVR-DISELVRQGQDLMVQVVKDPLGTKGARL 119 GL++ AFLHASDI G+E I EL+ +GQ+++VQV+KDP+G+KGARL Sbjct: 61 GLERTAFLHASDIARAEPAPVGDEPNGRPPPLPIDELLTEGQEVVVQVLKDPIGSKGARL 120 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE--QGGFIIRTAAEGV 177 TT IT+PSRYLV PG+ +GVS R+E +ERERL+ + + G I+RTAAE V Sbjct: 121 TTHITIPSRYLVLAPGSRALGVSARVEDPAERERLRAIGESLLADRGDMGIIVRTAAEQV 180 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 E L +D +L R+W + ER +++ +L L R +RD A +E++R+RVDSR Sbjct: 181 AEEALRADFDFLLRLWQSISERAAHASAGQRVHEDLPLTVRAMRDLAGSEVERVRVDSRE 240 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 Y ++ F ++PEM ++E+Y G +P+FDL+++E+EI RAL R+V LKSGG+L+IDQT Sbjct: 241 NYLNVVSFCRRFLPEMAPRVEYYPGERPLFDLYNIEDEILRALNRRVPLKSGGHLVIDQT 300 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EAMTTVD+NTGA+VGHR L++TIF TN+EA QAIARQLRLRNLGGIII+DFIDM E+H+ Sbjct: 301 EAMTTVDVNTGAYVGHRTLEETIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMVEEEHK 360 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R+VL +LE+AL KD KT ++G SALGLVEMTRKRTRES+EH LC CPTC GRG+VK+ Sbjct: 361 RQVLRALEKALQKDHAKTQISGVSALGLVEMTRKRTRESLEHQLCESCPTCGGRGSVKSA 420 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 ETV YEI REI+R ++S R +V A+ V + L +ES SLA++E F+G+ +++Q E Sbjct: 421 ETVSYEIFREILREARQFESRRLVVLAATEVVDLLLEDESTSLAQLEEFIGRPIELQAES 480 Query: 478 LYNQEQFDVVMM 489 LY QEQFDVV+M Sbjct: 481 LYTQEQFDVVLM 492 >UniRef50_A3JIF1 Ribonucleases G and E n=2 Tax=Gammaproteobacteria RepID=A3JIF1_9ALTE Length = 1092 Score = 609 bits (1571), Expect = e-173, Method: Composition-based stats. Identities = 165/490 (33%), Positives = 269/490 (54%), Gaps = 6/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE +R NIYKG+++RV P ++AAFVD G Sbjct: 2 KRMLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGKITRVEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL +I E + +I +++ +GQ+++VQV K+ G KGA LTT Sbjct: 62 ADRHGFLPLKEISK--EYFKKSPGQIEGKVNIKDVIAEGQEVIVQVDKEERGNKGAALTT 119 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP + G+S+RIE E ER +LK+ + + + G I+RTA G Sbjct: 120 YISLAGRYLVLMPNNARAGGISRRIEGE-ERAQLKEAMNQVQVPKSMGIIVRTAGIGRNS 178 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL + W + + + + ++ E + R +RD+ ++ + +D+ + Sbjct: 179 EELQWDLDYLVQFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDAAAVH 238 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E +L F +P +K++ Y+ P+F + +E +I+ A +R+V+L SGG ++ID TEA Sbjct: 239 EDVLNFVRAVMPTFENKIKLYSDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEA 298 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T TN+EA + I RQLRLR++GG+I+IDFIDM ++R Sbjct: 299 LVSIDINSSRATKGHDIEETALQTNLEAAEEIGRQLRLRDMGGLIVIDFIDMTPARNQRE 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + +AL DR + V S GL+EM+R+R R S+ CP C G+GT++ +E+ Sbjct: 359 VENKMREALEIDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIES 418 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR I + +VA L E+ LA +E + + P Sbjct: 419 LALSIMRLIYEESSKDKTGEVRAVVPVSVATFLLNEKRKQLATIEANQEVSIVIVPVPQM 478 Query: 480 NQEQFDVVMM 489 F+++ M Sbjct: 479 ETPHFEIIRM 488 >UniRef50_C8PW15 Ribonuclease E n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PW15_9GAMM Length = 1266 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 165/487 (33%), Positives = 267/487 (54%), Gaps = 9/487 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 2 KRILINATHAEEIRVALCNGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I P E +AG+ + + +I +L+++G +L+VQV K+ G KGA L+T Sbjct: 62 SQRQGFLPIREIAP--EYLAGDPR---STTNIKQLIKEGDELIVQVEKEERGNKGAALST 116 Query: 122 DITLPSRYLVFMPGA-SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S++I S R+ +K+ ++E + IIRTA G Sbjct: 117 LISLAGRYLVLMPNNARGGGISRQI-SGKLRDEMKQALSELRLPKGMSVIIRTAGIGKTT 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D +L +W + ++ ++ + L+ E + R +RD+ ++ I VD+ Y Sbjct: 176 DELQQDLDHLLNIWKGIQQQSQKFPSPRLLHQEAGVVTRAVRDYLRDDITEIWVDNEYAY 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 F +P+ +KL YT +P+F F +E +I+ A +R+V L SGG ++IDQTEA Sbjct: 236 NEAANFIEAVMPQQANKLRKYTDYEPMFARFGIEKQIETAYQREVRLPSGGSIVIDQTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++ +T FNTN+EA IARQLRLR++GG+I+IDFIDM +DH+++ Sbjct: 296 LVSIDINSSKATKGADVSETAFNTNLEAADEIARQLRLRDMGGLIVIDFIDMATDDHQKQ 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L++A DR + S GL+EM+R+R R S+E CP CHG G ++ + + Sbjct: 356 VENRLKEATKNDRARIQFAEISRFGLLEMSRQRLRPSLEEATGYLCPRCHGTGMIRDLRS 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR+I + +A L E+ +L +E G ++ + Sbjct: 416 LALSIMRQIEQRALQERHGEVQAEVPTDIAAFLLNEKRETLVCLEQESGTRITILPHAHL 475 Query: 480 NQEQFDV 486 +F++ Sbjct: 476 ESPEFNI 482 >UniRef50_C5BU48 Ribonuclease E n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BU48_TERTT Length = 1070 Score = 604 bits (1557), Expect = e-171, Method: Composition-based stats. Identities = 158/490 (32%), Positives = 253/490 (51%), Gaps = 6/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE + NIYKG+++R+ P ++AAFV+ Sbjct: 2 KRMLINATQPEELRVALVDGQWLYDLDIENRLKEQRKANIYKGKITRIEPSLEAAFVEYD 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I E I ++V++G +++VQV K+ G KGA LTT Sbjct: 62 KGRNGFLPLKEISREYFLKQPNEIDGRI--RIKDVVKEGMEVIVQVDKEERGNKGAALTT 119 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S+RI +R LK +++ G I+RTA G Sbjct: 120 FISLAGRYLVLMPNNPRAGGISRRI-DGDDRSELKDALSQIEIPNGMGIIVRTAGVGRSA 178 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL +W + E + L+ E + R +RD+ ++ + VD Y Sbjct: 179 EELQWDMNYLTTLWNNIQEAANQSTAPAFLFQESNVIIRAIRDYLRPDIGEVIVDDIAAY 238 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 +F +P SK++ Y P+F+ + +E +I+ A ER+V+L SGG ++ID TEA Sbjct: 239 NQAADFVQMVMPNYRSKVKLYEKSVPLFNHYQIEGQIETAFEREVKLPSGGSIVIDVTEA 298 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T TN+EA IARQLRLR++GG+++IDFIDM ++R Sbjct: 299 LVSIDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQRA 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + AL DR + V S GL+EM+R+R R S+ CP C G+GT++ ++ Sbjct: 359 VENRVRDALKMDRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTIRGTKS 418 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R + S VA L E+ S++++E +V V Sbjct: 419 IALSILRLVEEEAQKERSAEIRAVVPVPVATYLLNEKRKSISDIENRHQTRVTVLPNTEM 478 Query: 480 NQEQFDVVMM 489 ++V + Sbjct: 479 VTPHYEVTRL 488 >UniRef50_Q1YTQ8 Ribonuclease E n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTQ8_9GAMM Length = 1008 Score = 599 bits (1546), Expect = e-170, Method: Composition-based stats. Identities = 172/490 (35%), Positives = 269/490 (54%), Gaps = 7/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N + E RVA +DG L ++ IE R NIYKG+++RV P ++AAFVD G Sbjct: 2 KRMLINASHTEEVRVAMVDGQKLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL +I + + +I + +R+GQ++ VQV K+ G+KGA LTT Sbjct: 62 ADRHGFLPLKEISREYFKGKSSDGGRV---NIKDAIREGQEIFVQVEKEERGSKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S+RIE E ER L++ + E G I+RTA G Sbjct: 119 FISLAGRYLVLMPNNPRAGGISRRIEGE-ERADLREAMRGLDIPEGMGAIVRTAGIGRAT 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++W + + + + L+ E + R +RD+ ++ + VDS+ Y Sbjct: 178 EELQWDLDYLLQLWNTIEAEAEGAKAPHFLFQESNVIVRAIRDYLRQDVGEVIVDSQDAY 237 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 F +P+ T+K++ Y + P+F+ + +EN+I+ A R+V L SGG ++ID TEA Sbjct: 238 NLAAAFIGTVMPDFTNKVKFYQEQIPLFNRYQIENQIETAFRREVSLPSGGSIVIDITEA 297 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 M ++DIN+ ++++T FNTN EA + +ARQLRLR++GG+I+IDFIDM N H++ Sbjct: 298 MVSIDINSARATKGGDIEETAFNTNKEAAEEVARQLRLRDVGGLIVIDFIDMLNTRHQKE 357 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V +++ +AL DR + V S GL+EM+R+R R S+E + CP C G+GT++ + Sbjct: 358 VENTIREALKIDRARVQVGRISRFGLLEMSRQRLRPSLEETMSKICPRCKGQGTIRGTRS 417 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R I S +VA L E+ +A++E V V Sbjct: 418 LALSILRLIEEEAQKEFSKEIRAIVPVSVATFLLNEKRSEIADIESRNKINVVVLPNTQM 477 Query: 480 NQEQFDVVMM 489 F+VV + Sbjct: 478 ETPHFEVVRI 487 >UniRef50_Q2SK60 Ribonucleases G and E n=3 Tax=Gammaproteobacteria RepID=Q2SK60_HAHCH Length = 1056 Score = 599 bits (1546), Expect = e-170, Method: Composition-based stats. Identities = 161/490 (32%), Positives = 268/490 (54%), Gaps = 7/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE R NIYKG+++R+ P ++AAFVD G Sbjct: 2 KRMLINATQPEELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I ++ + +I +L+++GQ++++QV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEISREYFKSQPQKGGKM---NIKDLLQEGQEIIIQVDKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S+RIE + +R++LK ++ + G IIRTA G Sbjct: 119 FISLAGRYLVLMPNNPRAGGISRRIEGD-DRDQLKDAMSGLTVPKDMGLIIRTAGVGRSS 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL + W + + +Y E + R RD+ ++ + +D + Sbjct: 178 KELQRDLDYLLQFWDSIRHASDSKPAPFLIYQESNVVIRATRDYLRQDIGEVLIDHPQVH 237 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + L F +P ++++ Y P+F+ + +E++I+ A +R+V+L SGG ++ID TEA Sbjct: 238 QDALNFVKAVMPNFENRIKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDPTEA 297 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T TN+EA IARQLRLR++GG+I+IDFIDM ++R Sbjct: 298 LVSIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLIVIDFIDMTPNKNQRE 357 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L++AL DR + + S GL+EM+R+R R S+ CP C G+G+++ VE+ Sbjct: 358 VENRLKEALELDRARVQIGKISRFGLLEMSRQRLRPSLGETRNEMCPRCKGQGSIRGVES 417 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + +MR I + +VA L E+ +LA+ + G +V V Sbjct: 418 LALSVMRLIEEEAFKERTAEVRAICPISVATYLLNEKRENLAKTQKRHGVKVIVVPNSHM 477 Query: 480 NQEQFDVVMM 489 + F+V + Sbjct: 478 DTPHFEVQRI 487 >UniRef50_A6VXP7 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteobacteria RepID=A6VXP7_MARMS Length = 1071 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 158/489 (32%), Positives = 266/489 (54%), Gaps = 7/489 (1%) Query: 4 ELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +L+N T E RVA +DG L ++ IE +R NIYKGR++R+ P ++AAFVD G Sbjct: 3 RMLINATQQEELRVALVDGQRLYDLDIESGSREQKKSNIYKGRITRIEPSLEAAFVDFGA 62 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 D+ FL +I + + +I +++ +GQ+++VQV K+ G KGA LTT Sbjct: 63 DRHGFLPLKEISKTYFSKKSNHEGRI---NIKDVLSEGQEVIVQVDKEERGNKGAALTTF 119 Query: 123 ITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEA 180 ++L RYLV MP G+S+RI +R LK+ ++ E GG I+RTA G Sbjct: 120 VSLAGRYLVLMPNNPRAGGISRRI-DGDDRSHLKEAMSGLNTPENGGLIVRTAGVGRSTE 178 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 EL D YL +W+ + + + +Y E + R +RD+ ++ + +D + Y+ Sbjct: 179 ELQWDLDYLDTLWSSITKAASEKPAPFLIYQESNIVIRAIRDYLREDIGEVLIDEKSAYQ 238 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + F + +P S+++ YT P+F+ F +E +I+ A +R+V L SGG ++ID TEA+ Sbjct: 239 DAINFVMQVMPHFKSRIKMYTDSTPLFNRFQIETQIETAFQREVRLPSGGSIVIDPTEAL 298 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 ++DIN+ ++++T TN+EA IARQLRLR++GG+++IDFIDM +++ V Sbjct: 299 VSIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPVRNQKEV 358 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 ++ AL DR + + S GL+EM+R+R R S+ CP C+G+G ++ VE++ Sbjct: 359 ETRMKNALEADRARVQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGFIRDVESL 418 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 ++R I + + +VA L E+ ++A++E + + P Sbjct: 419 ALSVLRLIEEECSKERTAQIRAVLPVSVATFLLNEKRTNIAKIEKRNNVHIILVPNPHME 478 Query: 481 QEQFDVVMM 489 F+V + Sbjct: 479 TPHFEVERI 487 >UniRef50_C7RBE6 Ribonuclease, Rne/Rng family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBE6_KANKD Length = 951 Score = 596 bits (1537), Expect = e-169, Method: Composition-based stats. Identities = 157/491 (31%), Positives = 261/491 (53%), Gaps = 9/491 (1%) Query: 3 AELLVNVT--PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 +L+N T E RVA +DG L ++ IE R GNIYKG+V+R+ P ++AAFVD Sbjct: 2 RRMLINATNHHEELRVALVDGQRLYDLDIELAGREQKKGNIYKGKVTRIEPSLEAAFVDY 61 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G ++ FL ++ A + I E +++GQ+++VQ+ K+ G KGA LT Sbjct: 62 GAERHGFLPLKEVAREYMQNAPSRGR----PTIKEALKEGQEIIVQIDKEERGNKGAALT 117 Query: 121 TDITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 T I+L YLV MP G+S+RIE + ER LK+V+++ G I+RTA G Sbjct: 118 TSISLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKQVMSQLPVPNGMGCIVRTAGIGKS 176 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 E+ D YL W + + + + E + R +RD+ ++ I +D Sbjct: 177 LEEIQYDFNYLIDTWNGIKQVAGTRPAPFLITQESDVITRAIRDYLRPDIGEIIIDRPEI 236 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 YE + P+ SK++ Y P+F+ + VE++I+ A +R+V L SGG ++ DQTE Sbjct: 237 YERVKSELQYQRPDFVSKVKLYRDEIPLFNRYQVESQIESAFQREVRLPSGGSVVFDQTE 296 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ ++DIN+ ++++T +TN+EA + IARQLRLR++GG+I+IDFIDM ++R Sbjct: 297 ALLSIDINSARATKGGDIEETALHTNVEAAEEIARQLRLRDIGGLIVIDFIDMGPPRNQR 356 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V L+ ++++DR + + S GL+EM+R+R R S+E + CP C G G ++ + Sbjct: 357 EVERVLKDSVARDRARIQIGRISRFGLLEMSRQRLRPSLEESSQHVCPRCTGSGVIRGTD 416 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPL 478 ++ I+R + + VA L E+ + ++E ++ V P Sbjct: 417 SLALSILRLMEDEAMKESTAEVQAVVPVEVATFLLNEKRRKIEQIEKRQKVRLVVVPNPY 476 Query: 479 YNQEQFDVVMM 489 ++V+ + Sbjct: 477 LETPHYEVLRV 487 >UniRef50_B5EL09 Ribonuclease, Rne/Rng family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EL09_ACIF5 Length = 782 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 165/487 (33%), Positives = 263/487 (54%), Gaps = 9/487 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IER R NIYKGR++RV P ++AAFVD G Sbjct: 2 KRMLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + +K+ I +LVR+GQ+++VQV K+ +KGA LTT Sbjct: 62 AERHGFLPLKEIAREYFQQQEQGRKR-----IQDLVREGQEIIVQVDKEERSSKGAALTT 116 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 ++L RYLV MP GVS+RIE E +R ++++ + E G I RTA G Sbjct: 117 FVSLAGRYLVLMPNNPRAGGVSRRIEGE-DRTQIRQHLQLLDIPENMGVIARTAGIGQEL 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D YLK++W +++ + +Y E + R LRD ++ + +D Y Sbjct: 176 EALQRDLEYLKQIWQAIVDTAAPRAAPFLIYQEGNVVVRALRDHFSEDIGEVLIDEEGAY 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 A ++F +P+M +L++Y P+F + +E +I+ A R+V L+SGG ++ID TEA Sbjct: 236 NAAVQFMGSMMPKMVHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + VD+N+G +++ +T F TN+EA + IARQ+RLR+LGG+I++DFIDM + H+R Sbjct: 296 LVAVDVNSGRATKGQDIAETAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQRE 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L++AL DR + + S GL+EM+R+R S+E CP C+G G ++ E Sbjct: 356 VENKLKEALKLDRARVQLGRISRFGLMEMSRQRLGASLEEASSEPCPRCNGTGQIRGCEA 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 ++R + + VA L E+ + E+E ++ V P Sbjct: 416 TSMHVLRLLYEECMKTGAAEVECQVPVDVAVYLLNEKRRQILELEAKTDTRILVIPTPEM 475 Query: 480 NQEQFDV 486 + + Sbjct: 476 VTPHYQI 482 >UniRef50_Q1K0W4 Ribonuclease, Rne/Rng family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0W4_DESAC Length = 952 Score = 594 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 163/492 (33%), Positives = 274/492 (55%), Gaps = 3/492 (0%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L+N T P E RVA ++ GIL E+ IE + GNIYKG V RV G+QAAF+D Sbjct: 18 MSKKMLINATLPEEDRVAIVEDGILTELDIESAGHQQTKGNIYKGEVIRVEQGLQAAFID 77 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G + FL +I P +E + I+E++++GQ ++VQVVK+ GTKGA L Sbjct: 78 YGAQRPGFLQIGEIHPSLYPKRDDEGQSNRRPPITEILKRGQQILVQVVKEERGTKGAAL 137 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 TT+++LP RY+V +P +S G+S++I+++ R+ +K ++ + G+IIRTAA Sbjct: 138 TTEVSLPGRYMVLIPQSSSRGISRKIDNDHVRKEIKNTLSSLELPDNMGYIIRTAAIDQP 197 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 EL D YL + ++ ++ + +Y E L R +RD+ E+D + +D R Sbjct: 198 PEELKRDFDYLLNTYNSIVSHSEKAKAPALIYQESNLVLRSIRDYFSPEIDEVLIDDREV 257 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 ++ +F +PE ++ + R+PIF + +E +I V L SGG +++DQTE Sbjct: 258 FQEARDFFKAVMPEYMPLVKLHQERRPIFARYQIEEQISHLSSNTVNLPSGGSIVLDQTE 317 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ +D+N+G G ++++ T N+EA +ARQLRLR++GG+I+IDFIDM + R Sbjct: 318 ALVAIDVNSGKMGGEQDVEATAHRVNLEAAIEVARQLRLRDMGGLIVIDFIDMRQRRNAR 377 Query: 359 RVLHSLEQALSKDRVKTSVNGFS-ALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 V +L+ AL D+ + +V S GL+EM+R+R + ++ N CP C G G +++ Sbjct: 378 EVEKALKNALKIDKARVTVGRISHQFGLLEMSRQRIKANLGEGSYNMCPHCQGSGRIRSD 437 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 E+ ++R I + + A+ A L + L ++E ++++ +P Sbjct: 438 ESRSIALLRRIQAGTAKGHIEAVVCTAALDTANYLLNNKRRELYDLEQRYKLIIEIKGDP 497 Query: 478 LYNQEQFDVVMM 489 Y EQ D+ + Sbjct: 498 GYLPEQVDIEFV 509 >UniRef50_B0BR35 Ribonuclease E n=14 Tax=Pasteurellaceae RepID=B0BR35_ACTPJ Length = 995 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 157/490 (32%), Positives = 255/490 (52%), Gaps = 7/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG+++RV P ++AAFVD G Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + +I +++++GQ+++VQV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEISREYFPADYVFNGR---PNIKDIIKEGQEVIVQVSKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP G+S+RIE + ER LK+ + E G I+RTA G Sbjct: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-ERLELKEALDCLDVPEDVGLIVRTAGVGKSP 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D L W + + + + ++ E + R +RD+ ++ I +D++ + Sbjct: 178 EELQWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIF 237 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E P+ +++ Y G P+F + +E++I+ A +R+V L SGG ++ID TEA Sbjct: 238 EKAKNHIRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEA 297 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T +DIN+ ++++T NTN+EA IARQLRLR+LGG+I+IDFIDM H+R Sbjct: 298 LTAIDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRE 357 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + +A +DR + + S GL+EM+R+R S+ + CP C G G V+ E+ Sbjct: 358 VENRIREATRQDRARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES 417 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R + ++ + +A L E+ +++ +E QV V Sbjct: 418 IALSILRLLEEEAIKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESM 477 Query: 480 NQEQFDVVMM 489 F V + Sbjct: 478 ETPHFSVYRL 487 >UniRef50_A8FWL8 Ribonuclease, Rne/Rng family n=38 Tax=Gammaproteobacteria RepID=A8FWL8_SHESH Length = 1201 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 164/489 (33%), Positives = 263/489 (53%), Gaps = 7/489 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG+++RV P ++AAFVD G Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL +I Q + +I E+V++GQ+++VQ+ K+ G KGA LTT Sbjct: 62 ADRHGFLPLKEIAREYFPKGYSFQGR---PNIKEVVKEGQEVIVQIDKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP G+S+RIE + ER LK ++E + G I+RTA G Sbjct: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKAAMSELEVPQGMGLIVRTAGVGKDS 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 AEL D L+ WT + E + + ++ E + R +RD+ ++ + +D + Sbjct: 178 AELKWDLKVLEHHWTAIKEASEGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIF 237 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E + + P+ +++ Y P+F F +E +I+ A +R+V L SGG ++ID TEA Sbjct: 238 EDAKQHVALVRPDFVDRIKQYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEA 297 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T++DIN+ ++++T NTN+EA +ARQLRLR+LGG+++IDFIDM H+R Sbjct: 298 LTSIDINSARATKGGDIEETALNTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQRE 357 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + A+ DR + + S GL+EM+R+R R S+E + CP CHG+GT++ E+ Sbjct: 358 VENRMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTES 417 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R + ++ + VA L E+ ++ E +V V +P Sbjct: 418 LALSILRLMEEEAIKENTSQIEATVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNM 477 Query: 480 NQEQFDVVM 488 + VV Sbjct: 478 TTPDYRVVR 486 >UniRef50_C1DR24 Ribonuclease E n=27 Tax=Gammaproteobacteria RepID=C1DR24_AZOVD Length = 1139 Score = 590 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 168/490 (34%), Positives = 268/490 (54%), Gaps = 9/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE AR NIYKGR++RV P ++AAFVD G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + E + +I +++ +GQ+++VQV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEISREYFKKSPEGR-----INIKDVLSEGQEVIVQVEKEERGNKGAALTT 116 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S+RIE E ER L++ + G I+RTA G Sbjct: 117 FISLAGRYLVLMPNNPRAGGISRRIEGE-ERNELREALNGLDVPADMGLIVRTAGLGRSS 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++WT + E + +Y E + R +RD+ ++ + +DS Sbjct: 176 EELQWDLDYLVQLWTAIKEASLDRSPPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQ 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E L F + +P+ SK++ Y P+F+ F +E++I+ A +R+V+L SGG ++ID TEA Sbjct: 236 EEALSFIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T TN+EA + IARQLRLR++GG+I+IDFIDM ++R Sbjct: 296 LVSIDINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRA 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + +AL DR + + S GL+EM+R+R R S+ CP C G+G ++ VE+ Sbjct: 356 VEDKMREALEADRARVQIGRISRFGLLEMSRQRLRPSLGETSGIVCPRCSGQGIIRDVES 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R I + VA L E+ +S+ ++E+ ++ + Sbjct: 416 LSLAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRVRIVILPSDHM 475 Query: 480 NQEQFDVVMM 489 F+V + Sbjct: 476 ETPHFEVQRL 485 >UniRef50_Q7MM07 Ribonuclease E n=15 Tax=Gammaproteobacteria RepID=Q7MM07_VIBVY Length = 1036 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 161/490 (32%), Positives = 260/490 (53%), Gaps = 7/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKGR++RV P ++AAFVD G Sbjct: 2 KRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I Q + I E++ +GQ+++VQ+ K+ G+KGA LTT Sbjct: 62 AERHGFLPLKEIAKEYFPDGYSYQGR---PSIKEVLTEGQEVIVQIEKEERGSKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP G+S+RIE + ER LK ++ + G I+RTA G Sbjct: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKSALSTLELPQGMGLIVRTAGVGKSA 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D L + W + + + + ++ E + R +RD+ ++ I +DS Y Sbjct: 178 EELEWDLNVLLKHWAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIY 237 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E E P+ ++++ Y G P+F + +E++I+ A +R+V L SGG ++ID TEA Sbjct: 238 ERAKEHIQLVRPDFVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEA 297 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T++DIN+ ++++T NTN+EA IARQLRLR+LGG+++IDFIDM H+R Sbjct: 298 LTSIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQRE 357 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L +A+ DR + + S GL+EM+R+R S+ + CP C G G V+ E+ Sbjct: 358 VENRLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNES 417 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + ++R I ++ + L +A L E+ S+ +E ++ V Sbjct: 418 LALSVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDM 477 Query: 480 NQEQFDVVMM 489 F+V+ + Sbjct: 478 ETPHFEVIRV 487 >UniRef50_C4X6M8 RNase E n=25 Tax=Gammaproteobacteria RepID=C4X6M8_KLEPN Length = 1077 Score = 590 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 158/492 (32%), Positives = 264/492 (53%), Gaps = 9/492 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + +I +++R+GQ+++VQ+ K+ G KGA LTT Sbjct: 62 AERHGFLPLKEIAREYFPANYNAHGR---PNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP G+S+RIE + +R LK+ +A + G I+RTA G Sbjct: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPDGMGLIVRTAGVGKSA 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D ++ + W + + + + ++ E + R RD+ ++ I +D+ Sbjct: 178 EALQWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 Query: 240 EALLEFTSEYI-PEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 E + + P+ +SK++ YTG P+F + +E++I+ A +R+V L SGG ++ID TE Sbjct: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +DIN+ ++++T FNTN+EA IARQLRLR+LGG+I+IDFIDM H+R Sbjct: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V + L +A+ +DR + ++ S GL+EM+R+R S+ + CP C G GTV+ E Sbjct: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVG-KQVKVQIEP 477 ++ I+R I ++ +A L E+ +++ +E G +V + Sbjct: 418 SLSLSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPND 477 Query: 478 LYNQEQFDVVMM 489 + V+ + Sbjct: 478 EMQTPHYSVLRV 489 >UniRef50_B5JUW5 Ribonuclease E n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUW5_9GAMM Length = 914 Score = 589 bits (1520), Expect = e-167, Method: Composition-based stats. Identities = 165/487 (33%), Positives = 266/487 (54%), Gaps = 5/487 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L + IE +R NIYKG ++RV P ++AAFVD G Sbjct: 2 KRMLINATQPEELRVAIVDGQKLINLDIEVPSREQKKANIYKGVITRVEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I E ++ + +++GQ+L++QV K+ G KGA +TT Sbjct: 62 AERHGFLPFKEI-NRRYLPDDIETNDNGRPNVKDGIKEGQELIIQVEKEERGNKGAAITT 120 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGE 179 +I+L RYLV MP + GVS+RIE E ER ++++ + + G G I+RTA G Sbjct: 121 NISLAGRYLVAMPHSPRSGGVSRRIEGE-ERAQVREAMQDMTIPDGTGVIVRTAGVGRTS 179 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++W + + + Q + +Y E + R LRD ++ I +D + Sbjct: 180 EELQWDFDYLAQIWEAIEKAAESRQGPFLIYQESNVIIRALRDHYRDDIGEILIDEAGIH 239 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + +F S + KL+ Y P+F+ + +E++I+ A +R+V L SGG +++D TEA Sbjct: 240 KQANDFMSLAMQNDLRKLKFYEDSVPLFNRYQIESQIESAFQREVRLPSGGSIVVDPTEA 299 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T++DIN+ N+D+T NTN+EA IARQLRLR+LGG+++IDFIDM + H+R Sbjct: 300 LTSIDINSARATKGSNIDETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMGSNKHQRE 359 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L A+ DR + N S GL+EM+R+R R S+ CP C G GT++++E+ Sbjct: 360 VENRLRDAVRIDRARVQTNRISKFGLLEMSRQRLRPSLGESSKEVCPRCEGHGTIRSIES 419 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + ++R + ++ R + VA + E+ +AE+E + + Sbjct: 420 LALAVLRIMEEEALKENTGRVIAQLPVDVATFMLNEKRQQVAELENRNSIDLLIVPNKAL 479 Query: 480 NQEQFDV 486 + V Sbjct: 480 ETPHYVV 486 >UniRef50_C8W5Q7 Ribonuclease, Rne/Rng family n=11 Tax=Bacteria RepID=C8W5Q7_DESAS Length = 564 Score = 588 bits (1517), Expect = e-166, Method: Composition-based stats. Identities = 220/489 (44%), Positives = 311/489 (63%), Gaps = 2/489 (0%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E++VNV ETRVA ++ + EI+IER + + GNI+KG+V VLPGMQAAFVDI Sbjct: 1 MLKEIVVNVGEEETRVAVLEDKVTVEIYIERAINQRLEGNIFKGKVENVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GLDK AFL+ D +P +I ++++QGQDL+VQ+VK+P+GTKG R+T Sbjct: 61 GLDKNAFLYVEDALPSRNPEENRNSLDLCA-NIGDVLKQGQDLVVQIVKEPIGTKGPRIT 119 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T ITLP RYLV MP ++G+S+RI E ERERLK++ A G I+RT AEGV E Sbjct: 120 THITLPGRYLVLMPTVDYIGISRRIADEQERERLKELAARVKPRDMGLIVRTVAEGVSEE 179 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 ELA D L ++W K++ R L+ +L L R+LRD ++DR+ +DSR YE Sbjct: 180 ELAQDVNVLAKLWRKIINRSNHGPVPNLLHRDLELVHRILRDIFTEDVDRLIIDSRYEYE 239 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +LE P++ K+ R+ +F+ + +E E+++A++RKV LK GGYL+IDQ EA+ Sbjct: 240 RVLELLDIIDPQLKIKVSV-DERENLFEEYGIEMELEKAVKRKVWLKCGGYLVIDQAEAL 298 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG FVG NL+DT+ TN++A IARQLRLRN+GGIII+DFIDM ++HR++V Sbjct: 299 TAIDVNTGKFVGSTNLEDTVLRTNLDAALEIARQLRLRNIGGIIIVDFIDMLEDEHRQKV 358 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L LE+ + KD+ KT++ G + LGLVEMTRK+ R S+ +L CP C GRG V + ETV Sbjct: 359 LEVLEKEIKKDKTKTNLLGITQLGLVEMTRKKVRPSLSEMLQKPCPYCEGRGKVLSEETV 418 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 EI ++ +D LV A+P VA L G +L ++E GK + ++ Y+ Sbjct: 419 GIYFKNEIYQLSRQTPADTILVEANPLVAARLIGSGGSNLRDLENKTGKNLYIRGSANYH 478 Query: 481 QEQFDVVMM 489 E + + Sbjct: 479 IESVKIRPL 487 >UniRef50_A9ADG1 Ribonuclease, Rne/Rng family n=89 Tax=Betaproteobacteria RepID=A9ADG1_BURM1 Length = 1111 Score = 587 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 156/492 (31%), Positives = 251/492 (51%), Gaps = 10/492 (2%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L N T E RVA +DG L +I IE R GNIYKG V+R+ P ++A FV+ G Sbjct: 59 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 118 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL ++ ++ I + +R+GQ+L+VQV K+ G KGA LTT Sbjct: 119 EDRHGFLPFKEVARQYF----KDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTT 174 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP GVS+RIE + ER+ L++ +A+ + I RTA G Sbjct: 175 FISLAGRYLVLMPNNPRGGGVSRRIEGD-ERQELRETMAQLQIPDGMSMIARTAGIGRSA 233 Query: 180 AELASDAAYLKRVWTKVMERKKRPQT--RYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 EL D YL ++W + + +Y E +L R +RD+ ++ I +D+ Sbjct: 234 EELQWDLNYLLQLWRAIEAASQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTE 293 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 Y+ F +P+ SK++ Y P+F F +E++I+ A R V L SGG ++ID T Sbjct: 294 IYDQARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHT 353 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+ +D+N+ ++++T TN+EA +ARQLRLR+LGG+I+IDFIDM + + Sbjct: 354 EALVAIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQ 413 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V L+ AL DR + + S GL+E++R+R R ++ CP C+G G ++ Sbjct: 414 REVEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDT 473 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 E+ +++R I ++ V L E+ + ++E + + Sbjct: 474 ESSALQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNK 533 Query: 478 LYNQEQFDVVMM 489 + + + + Sbjct: 534 HLDTPHYKLERL 545 >UniRef50_D0L1K6 Ribonuclease, Rne/Rng family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K6_HALNC Length = 1016 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 171/487 (35%), Positives = 264/487 (54%), Gaps = 6/487 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L +I IE N+YK ++R+ P ++A FV+ G Sbjct: 2 KRMLINATQAEEIRVALVDGQTLYDIDIETPGHEQKKSNVYKALITRIEPSLEAVFVNYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL +I + K + I +++GQ+++VQV K+ G KGA LTT Sbjct: 62 ADRHGFLPFKEIARSYFDSEAVDDKGRPI--IKSALKEGQEIIVQVEKEERGNKGAALTT 119 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 ++L RYLV MP GVS+RIE + +R +K ++E E G I+RTA G Sbjct: 120 FVSLAGRYLVLMPNNPRAGGVSRRIEGD-DRAEIKAALSELVVPEGMGLIVRTAGVGREP 178 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 AEL SD YL++VW ++++ + + + +Y E L R LRD+ ++ + +D + Sbjct: 179 AELQSDLDYLQQVWDAIVKKSEARKAPFLIYQESDLIIRALRDYMRNDIGEVLIDEPNMH 238 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + L+F + P+ K+ Y R P+F + +E++I+ A ER V L SGG L+ D EA Sbjct: 239 QQALDFVNLVSPDSVDKIRLYQDRTPLFTRYQIESQIESAYERNVTLPSGGELVFDVAEA 298 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T VDIN+G ++++DT FNTN+EA IARQLRLR+LGG+++IDFIDM H+R Sbjct: 299 LTAVDINSGRSTKGQDIEDTAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMGQPKHQRE 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L AL DR + + S GL+EM+R+R S+E + CP C G+G +++VE+ Sbjct: 359 VENRLRDALKMDRARVQLGRISRFGLLEMSRQRLSASLEESAQHVCPRCMGQGHIRSVES 418 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR ++ + R + V L E+ L E+E +V V Sbjct: 419 LALSIMRLMIDESMKDQTGRVVAQVPVDVGTYLLNEKRLQLHEIEQNHQVEVLVIPNINL 478 Query: 480 NQEQFDV 486 F + Sbjct: 479 ETPHFKI 485 >UniRef50_P21513 Ribonuclease E n=119 Tax=Gammaproteobacteria RepID=RNE_ECOLI Length = 1061 Score = 586 bits (1512), Expect = e-166, Method: Composition-based stats. Identities = 158/492 (32%), Positives = 262/492 (53%), Gaps = 9/492 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + +I +++R+GQ+++VQ+ K+ G KGA LTT Sbjct: 62 AERHGFLPLKEIAREYFPANYSAHGR---PNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP G+S+RIE + +R LK+ +A E G I+RTA G Sbjct: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSA 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D ++ + W + + + + ++ E + R RD+ ++ I +D+ Sbjct: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 Query: 240 EALLEFTSEYI-PEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 E + + P+ +SK++ YTG P+F + +E++I+ A +R+V L SGG ++ID TE Sbjct: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +DIN+ ++++T FNTN+EA IARQLRLR+LGG+I+IDFIDM H+R Sbjct: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V + L +A+ +DR + ++ S GL+EM+R+R S+ + CP C G GTV+ E Sbjct: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFV-GKQVKVQIEP 477 ++ I+R I ++ +A L E+ ++ +E G + + Sbjct: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 Query: 478 LYNQEQFDVVMM 489 + V+ + Sbjct: 478 QMETPHYHVLRV 489 >UniRef50_A5WCP3 RNAse E n=3 Tax=Proteobacteria RepID=A5WCP3_PSYWF Length = 1368 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 157/487 (32%), Positives = 255/487 (52%), Gaps = 10/487 (2%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 2 KRILINATHNEEVRVALCKGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I E+ +I +L+++G +L+VQV K+ G KGA L+T Sbjct: 62 SKRQGFLPVREIASEYLSGNPREE------NIRKLIKEGDELIVQVEKEERGNKGAALST 115 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 ++L RYLV MP G+S++I S RE +K+++ + I+RTA G + Sbjct: 116 YVSLAGRYLVLMPNNPKGGGISRQI-SGKLREDMKRMLGNLDLPKGMSVIVRTAGIGKTQ 174 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 +L D +L +W + ++ K+ + ++ E + R +RD+ ++ I +D+ + Sbjct: 175 EDLQHDLNHLLNIWNAIQDQNKKYASPRLVHQEAGVVTRAVRDYLRDDITEIWIDNEEAF 234 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 F +P KL YT +P+F F+VE +I+ A +R+V L SGG ++IDQTEA Sbjct: 235 IEAETFIKAVMPTQIDKLRKYTDFEPMFSSFNVERQIETAYQREVRLPSGGSIVIDQTEA 294 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++ +T ++TN+EA IARQLRLR++GG+I+IDFIDMN+ H++ Sbjct: 295 LVSIDINSAKSTKGADVAETAYHTNLEAADEIARQLRLRDMGGLIVIDFIDMNDSKHQKE 354 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V L +A DR + S GL+EM+R+R R S+E CP CHG G ++ + + Sbjct: 355 VEKRLVEATKYDRARVQFGEISRFGLMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRS 414 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR+I + +A L E+ SL +E G ++ + Sbjct: 415 LSLSIMRQIEQTALKERHGEVQAEVPTDIAAFLLNEKRESLVYLEQDSGTRITILPHAHL 474 Query: 480 NQEQFDV 486 F++ Sbjct: 475 ESPNFNI 481 >UniRef50_C6MTB8 Ribonuclease, Rne/Rng family n=1 Tax=Geobacter sp. M18 RepID=C6MTB8_9DELT Length = 937 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 178/493 (36%), Positives = 282/493 (57%), Gaps = 4/493 (0%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L+N E RVA ++ G L ++ +E GNIYKG V RV G+QAAFVD Sbjct: 1 MSKKMLINALHAEEARVAIVEDGRLVDLDVEIAGNEQTRGNIYKGVVVRVEQGLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGE--EQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGA 117 IGL K FL ++ P + E ++ I E++R+GQ+L+VQV K KG+ Sbjct: 61 IGLKKLGFLQMGELHPENWKWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGS 120 Query: 118 RLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEG 176 LTT +LP RY+V MPG+ G+S+++ESE ER++LK+++AE E G+IIRT A G Sbjct: 121 ALTTYASLPGRYMVLMPGSDSAGISRKVESEGERKKLKEIIAEMTIPEGYGYIIRTEAMG 180 Query: 177 VGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSR 236 EL D L ++ + E+ + +Y E AL R +RD+ A++D + VDS+ Sbjct: 181 RTRDELQKDLDNLIALYEGIREKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSK 240 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 ++ + + E P ++ + ++PIF + +E +I E+KV LKSGG + I+ Sbjct: 241 DVFKDVRDALKEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEP 300 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+ ++D+N+G G + ++DT F TN+EA + ARQLRLR+LGG+I+IDFIDM + H Sbjct: 301 TEALVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKH 360 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 V +L+ AL D+ + +V+ S GL+EM+R+R R+++ ECP C GRG VK+ Sbjct: 361 NSEVEKTLKSALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKS 420 Query: 417 VETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIE 476 VE + +R++ + VA L + H L+++E +V V+ + Sbjct: 421 VEAMALSFLRKVHAAAAKGTIGEVVGSLPLEVAYYLLNRKRHELSQIENDYDIEVTVKGK 480 Query: 477 PLYNQEQFDVVMM 489 P Y Q ++ ++ Sbjct: 481 PSYLLNQMELELI 493 >UniRef50_A4A8E4 Ribonuclease E n=5 Tax=unclassified Gammaproteobacteria RepID=A4A8E4_9GAMM Length = 1003 Score = 584 bits (1506), Expect = e-165, Method: Composition-based stats. Identities = 164/490 (33%), Positives = 268/490 (54%), Gaps = 6/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++L+N T E RVA +DG L ++ IE R NIY G+++RV P ++AAFVD G Sbjct: 2 KKMLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I ++ I ++V++G L+VQV K+ G KGA LTT Sbjct: 62 AERHGFLSVKEIAREYFYRNPKDVDGK--FSIRDVVKEGTRLIVQVDKEERGNKGAALTT 119 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+LP RY+V MP G+S+RIE + +R L++ ++ + G IIRTA G Sbjct: 120 FISLPGRYMVLMPNNPRAGGISRRIEGD-DRAELREALSALDIPDGMGVIIRTAGVGRSA 178 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++W V + + ++ LY E + R +RD+ ++D++ +DS + Sbjct: 179 EELQWDLNYLLQLWEAVSKAGEENRSPVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAF 238 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + ++F S +P+ +++ Y P+F+ F +E++I+ A +R+V L SGG ++ID TEA Sbjct: 239 KQAMDFVSMVMPKYQQRIKLYEDNIPLFNRFQIESQIETAFQREVRLPSGGSIVIDPTEA 298 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ N++ T TN+EA +ARQLRLR++GG+I+IDFIDM ++R Sbjct: 299 LVSIDINSARATKGANIEATALQTNLEAADEVARQLRLRDMGGLIVIDFIDMLAAKNQRA 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + AL+ DR + V S GL+EM+R+R R S+ CP C G+G+++ ++ Sbjct: 359 VENRMRDALAIDRARVQVGRISRFGLLEMSRQRLRPSLGETSAIICPRCTGQGSIRDTKS 418 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R + + VA L E+ +L+EVE +V V P Sbjct: 419 LSLSILRLLEEEAIKDRTAEVRAIVPVDVAAYLLNEKRVALSEVESLTRVRVLVIPNPNL 478 Query: 480 NQEQFDVVMM 489 F+V + Sbjct: 479 ETPHFEVTRL 488 >UniRef50_C6E0U6 Ribonuclease, Rne/Rng family n=8 Tax=Desulfuromonadales RepID=C6E0U6_GEOSM Length = 919 Score = 582 bits (1501), Expect = e-165, Method: Composition-based stats. Identities = 178/489 (36%), Positives = 278/489 (56%), Gaps = 4/489 (0%) Query: 5 LLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N P E RVA ++ G L ++ +E I GNIYKG V RV G+QAAFVDIGL Sbjct: 1 MLINALHPEEARVAIVEDGRLVDLDVEIAGNEQIRGNIYKGVVVRVEQGLQAAFVDIGLK 60 Query: 64 KAAFLHASDIMPHTECVAGE--EQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 K FL ++ P + E ++ I E++R+GQ+L+VQV K KG+ LTT Sbjct: 61 KLGFLQMGELHPENWKWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGSALTT 120 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEA 180 ++LP RY+V MPG+ G+S+++E + ER++LK+++AE E G+IIRT A G Sbjct: 121 YVSLPGRYMVLMPGSDSAGISRKVEGDGERKKLKEIIAEMTIPEGYGYIIRTEAMGRTRD 180 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 EL D L + + + + +Y E AL R +RD+ A++D + VDS+ Y Sbjct: 181 ELQKDLDNLIATYQGIRSKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKDVYN 240 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + E P ++ + ++PIF + +E +I E+KV LKSGG + I+ TEA+ Sbjct: 241 DVRDCLKEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEAL 300 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 ++D+N+G G + ++DT F TN+EA + ARQLRLR+LGG+I+IDFIDM + H V Sbjct: 301 VSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKHNAEV 360 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 +L+ AL D+ + +V+ S GL+EM+R+R R+++ ECP C GRG VK+VE + Sbjct: 361 EKTLKTALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKSVEAM 420 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 +R++ + VA L + H L+++E +V V+ +P Y Sbjct: 421 ALSFLRKVHAAAAKGTIGEVVGGLPLEVAYYLLNRKRHELSQIESDYDIEVTVKGKPSYL 480 Query: 481 QEQFDVVMM 489 Q D+ ++ Sbjct: 481 LNQMDLELI 489 >UniRef50_C5AD76 Ribonuclease E n=21 Tax=Proteobacteria RepID=C5AD76_BURGB Length = 1125 Score = 581 bits (1499), Expect = e-164, Method: Composition-based stats. Identities = 155/492 (31%), Positives = 249/492 (50%), Gaps = 10/492 (2%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L N T E RVA +DG L +I IE R GNIYKG ++R+ P ++A FV+ G Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL ++ + I + +R+GQ+L+VQV K+ G KGA LTT Sbjct: 62 EDRHGFLPFKEVARQYF----RDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTT 117 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP GVS+RIE + ER+ L++ +A+ E I RTA G Sbjct: 118 FISLAGRYLVLMPNNPRGGGVSRRIEGD-ERQELRETMAQLEIPEGMSMIARTAGIGRSA 176 Query: 180 AELASDAAYLKRVWTKVMERKKRPQT--RYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 EL D YL ++W + K +Y E +L R +RD+ ++ I +D+ Sbjct: 177 EELQWDLNYLLQLWHAIEAASKSGHAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTE 236 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 ++ F +P+ K++ Y P+F F +E++I+ A R V L SGG ++ID T Sbjct: 237 IHDQARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHT 296 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+ +D+N+ ++++T TN+EA +ARQLRLR+LGG+I+IDFIDM + + Sbjct: 297 EALVAIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQ 356 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V L+ AL DR + + S GL+E++R+R R ++ CP C+G G ++ Sbjct: 357 REVEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDT 416 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 E+ +++R I ++ V L E+ + ++E + + Sbjct: 417 ESSALQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNK 476 Query: 478 LYNQEQFDVVMM 489 + + + + Sbjct: 477 HLDTPHYKLERL 488 >UniRef50_C8N8A8 Ribonuclease G and E n=19 Tax=Proteobacteria RepID=C8N8A8_9GAMM Length = 1302 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 153/488 (31%), Positives = 265/488 (54%), Gaps = 6/488 (1%) Query: 5 LLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G Sbjct: 1 MLINATQQEELRVALVDGQQLYDLDIETLYSAQKKANIYKGKITRIEPSLEAAFVDYGAQ 60 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I E + G +++ GQ+++VQ+ K+ G KGA LTT I Sbjct: 61 RHGFLPFKEIGK--EYLTGSTTAHEGQLAFKDMIEVGQEVLVQIDKEERGNKGAALTTYI 118 Query: 124 TLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAE 181 +L R+LV MP GVS+RI+ + +R+ L++ + E G I+RTA G + E Sbjct: 119 SLAGRFLVLMPNNPRAGGVSRRIQGD-DRKELRETLDMLDVPENMGIIVRTAGVGRAQEE 177 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D +L ++W + E ++ Q + +Y E + R LRD+ ++ +I +D Y+ Sbjct: 178 LQWDLDFLLQLWEAISEEYRKAQPQRLIYQESNIIVRALRDYLRPDIGQILIDDERVYQQ 237 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 +F + +P +KL+ Y P+F + +E +I+ A +R V+L SGG L+ID TEA+ Sbjct: 238 ASDFMTLVMPNNLNKLKLYQDNIPLFTRYQIEGQIESAYQRNVQLPSGGELVIDYTEALV 297 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 ++DIN+ ++++T + TN+EA IARQ+RLR+LGG+I+IDFIDM+ +R+ V Sbjct: 298 SIDINSSKATKGGDIEETAYQTNLEAADEIARQMRLRDLGGLIVIDFIDMSVSRNRKDVE 357 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 + L +A DR + + S GL+E++R+R R S++ CP C G+G+++ ++++ Sbjct: 358 NRLYEATKIDRARVQIGRISRFGLLELSRQRLRPSMDESSHRVCPRCKGQGSIRGIQSMA 417 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQ 481 ++R I + R ++A L E+ + ++E +V + + Sbjct: 418 LSLLRLIEEEAMKERTRRITGELPVSIATYLLNEKRAVIRQIEQRNKVEVVLVPNADLHT 477 Query: 482 EQFDVVMM 489 + + + Sbjct: 478 PDYYIERL 485 >UniRef50_P44443 Ribonuclease E n=98 Tax=Gammaproteobacteria RepID=RNE_HAEIN Length = 935 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 157/490 (32%), Positives = 256/490 (52%), Gaps = 7/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG+++RV P ++AAFVD G Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I Q + +RDI + +GQ+++VQV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEIAREYFPDDYVFQGRPNIRDI---LVEGQEVIVQVNKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 ++L YLV MP G+S+RIE + ER LK+ ++ + G I+RTA G Sbjct: 119 FVSLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKEALSSLDVPDGVGLIVRTAGVGKSP 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D L W + + + + ++ E + R +RD+ ++ I +DS + Sbjct: 178 EELQWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIF 237 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E E P+ ++++ Y G P+F + +E++I+ A +R+V L SGG ++ID TEA Sbjct: 238 EKAKEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEA 297 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T +DIN+ ++++T NTN+EA IARQLRLR+LGG+++IDFIDM H+R Sbjct: 298 LTAIDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQRE 357 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + A+ DR + ++ S GL+EM+R+R S+ + CP C G G V+ E+ Sbjct: 358 VENRIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNES 417 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R + ++ + +A L E+ +++ +E + V Sbjct: 418 LSLSILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAM 477 Query: 480 NQEQFDVVMM 489 F V + Sbjct: 478 ETPHFSVFRL 487 >UniRef50_A7C082 Ribonuclease G and E n=1 Tax=Beggiatoa sp. PS RepID=A7C082_9GAMM Length = 518 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 259/521 (49%), Positives = 363/521 (69%), Gaps = 38/521 (7%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ E+L+NVT ETRVA I+ GILQE+ IER ++RG+V NIYKGRV RVLPGMQAAFV+I Sbjct: 1 MSEEVLINVTSRETRVAMIENGILQEVIIERTSKRGLVSNIYKGRVCRVLPGMQAAFVEI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL++AAFLH SDI+ E Q I EL+ +G+ L+VQV+KDPLGTKGARLT Sbjct: 61 GLERAAFLHLSDIINTHLQAGIEPANQ-----IDELLHEGKTLLVQVIKDPLGTKGARLT 115 Query: 121 TDITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEYCD---------------- 163 I++PSRY+V +P + +G+S RIES ER+RLK + ++ Sbjct: 116 AQISIPSRYVVLLPYSPNMIGISTRIESPEERQRLKDIALQHTGMVEQDKLTETKDNNET 175 Query: 164 ----------------EQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRY 207 + GFI+RT AE E L +D +L R+WT + E++ + + Sbjct: 176 VMMHAVSSPKTSVESGKNYGFILRTVAEEAEENFLCADMDFLCRLWTDIQEKETKVKPCS 235 Query: 208 QLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIF 267 +Y +L+L R +RD + + +D+I++DSR T+ ++ F ++IP++ +EHYTG +P+F Sbjct: 236 LVYRDLSLVLRTIRDLSGSSIDKIKIDSRDTHHQVVNFAKKFIPDLVPHIEHYTGERPLF 295 Query: 268 DLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEA 327 DL+ +++EI +ALE KV LKSGGYL+IDQTEAMTT+D+NTG +VG RNL++TIF TN+EA Sbjct: 296 DLYSIDDEINKALEPKVPLKSGGYLVIDQTEAMTTIDVNTGGYVGSRNLEETIFRTNLEA 355 Query: 328 TQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVE 387 QAIARQLRLRNLGGIII+DFIDM +E+H+R+VL +LE+ L +DR K+ ++ S LGLVE Sbjct: 356 AQAIARQLRLRNLGGIIILDFIDMKDEEHQRQVLRTLEKCLERDRTKSYISEISQLGLVE 415 Query: 388 MTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPA 447 MTRKRTRES+EH LC CPTC GRGT+KT ETVCY+I R+IVR +++ +FLV AS Sbjct: 416 MTRKRTRESLEHTLCRTCPTCRGRGTIKTAETVCYDIFRDIVRFTQQFETQKFLVLASQK 475 Query: 448 VAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 + + + +ES+S+ E+E +G ++ Q+E Y+QE +D++ Sbjct: 476 IVDTMLEDESNSVLELEESIGCSIRFQVETSYSQELYDIIP 516 >UniRef50_Q2YA54 Ribonuclease E n=7 Tax=Betaproteobacteria RepID=Q2YA54_NITMU Length = 977 Score = 579 bits (1493), Expect = e-164, Method: Composition-based stats. Identities = 160/490 (32%), Positives = 254/490 (51%), Gaps = 8/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L N T P E RVA +DG L ++ IE + NIYK ++R+ P ++AAFV+ G Sbjct: 2 KRMLFNATQPEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + + + + + + +GQ+L+VQV KD GTKGA LTT Sbjct: 62 GERHGFLPFKEISRSYLKESPDPGRV----RVQDALHEGQELIVQVDKDERGTKGAALTT 117 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP GVS+RIE E +R L+ V++ + I RTA G E Sbjct: 118 YISLAGRYLVLMPNNPRGGGVSRRIEGE-DRAELRDVMSHLNIPQGMSIIARTAGIGRTE 176 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++W + + K + +Y E +L R +RD+ + E+ I +D+ Y Sbjct: 177 EELQWDLNYLLQLWRAIEDASKGQSGAFLIYQESSLVIRAIRDYFNQEIGEILIDTESIY 236 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E +F +P ++++ Y P+F F +E++I+ A R+V L SGG ++ID TEA Sbjct: 237 EQACQFMGHVMPGNVARVKLYRDDVPLFSRFQIEHQIETAYSRQVTLPSGGAIVIDHTEA 296 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + +VD+N+ +++ T TN+EA IARQLRLR+LGG+++IDFIDM ++R Sbjct: 297 LVSVDVNSARATRGSDIEQTALATNLEAADEIARQLRLRDLGGLVVIDFIDMEVSRNQRE 356 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L AL DR + + S GL+E++R+R R S+ CP CHG G ++ ++ Sbjct: 357 VENRLHDALRYDRARVQMGKISRFGLLELSRQRLRPSLGESSYISCPRCHGTGHIRGTDS 416 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 I+R I ++ VA L E+ + +E + V + Sbjct: 417 SALHILRIIQEEAMKENTAVLHAQVPVDVATYLLNEKRAEIHAIEARLKVSVVLIPNIHL 476 Query: 480 NQEQFDVVMM 489 + + + Sbjct: 477 ETPNYSITRL 486 >UniRef50_D0LZK2 Ribonuclease, Rne/Rng family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZK2_HALO1 Length = 543 Score = 579 bits (1493), Expect = e-164, Method: Composition-based stats. Identities = 228/511 (44%), Positives = 325/511 (63%), Gaps = 24/511 (4%) Query: 1 MTAELLV-NVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ LLV N ETRV + G L E +E + RGIVGNIY+GRVSRVLPGMQAAFVD Sbjct: 1 MSENLLVVNAEGPETRVGVVHEGTLSEYFVESKRDRGIVGNIYRGRVSRVLPGMQAAFVD 60 Query: 60 IGL--DKAAFLHASDIMPHTEC---------------------VAGEEQKQFTVRDISEL 96 +G ++A FL+ +DI+ + +A ++ R I +L Sbjct: 61 LGPTVERAGFLYVADILGAADERKLFADEDPDSDDAPEGTAARLARSRKRANANRKIEDL 120 Query: 97 VRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKK 156 ++ Q+++VQVVK+P+G KGARLT ++LP RY VFMP VGVS+RI SE+ER RL+K Sbjct: 121 LKADQEVLVQVVKEPIGLKGARLTGYLSLPGRYNVFMPAVQQVGVSRRISSEAERRRLRK 180 Query: 157 VVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALA 216 +V + GGFI+RTAAEGV + E+ D YL R+W+++ R++ + +Y +L L Sbjct: 181 IVTSVGHKSGGFIVRTAAEGVVDQEIRDDVDYLLRLWSEIQRRERSMKGPGLIYADLDLV 240 Query: 217 QRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEI 276 R +RD A+ I +D Y+ +FT ++P +++ Y GRQPIFD + VE E+ Sbjct: 241 LRTIRDLLRADTKEIVIDDEEQYDRARKFTMAFLPPAVDRIKQYRGRQPIFDHYGVEAEL 300 Query: 277 QRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLR 336 + AL R+VELKSGG L+IDQ EA+T +D+NTG+FVG R+L++T+ NIEA + +ARQLR Sbjct: 301 RTALGRRVELKSGGSLVIDQGEALTAIDVNTGSFVGKRDLEETVTKNNIEACREVARQLR 360 Query: 337 LRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRES 396 LRN+GGII+IDF+DM+ E++R++V L QAL+ DR + ++ S LGLVEMTRKRTRES Sbjct: 361 LRNIGGIIVIDFVDMDKENNRKKVWDILNQALASDRSRCNLTKISELGLVEMTRKRTRES 420 Query: 397 IEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEE 456 + +L CPTC G G VK+ TV +E++RE+ R+ ++D V +P VA+ L E Sbjct: 421 LNQLLTEACPTCSGSGVVKSTTTVAHEVLREVRRLGSHAEADSIDVECAPVVADLLDKYE 480 Query: 457 SHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 L E+E K+V +Q Y +Q+ V+ Sbjct: 481 RGYLDELEKKFQKKVVIQSNGGYRPDQYQVM 511 >UniRef50_A8L1W0 Ribonuclease, Rne/Rng family n=25 Tax=Actinobacteridae RepID=A8L1W0_FRASN Length = 1427 Score = 579 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 159/420 (37%), Positives = 245/420 (58%), Gaps = 8/420 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V T++A ++ G+L E + R + GN+Y GRV VL M+AAFVDIG Sbjct: 777 ERRMIVRHNGDRTQIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDIG 836 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G +K I ++++ GQ ++VQV KDP+G KGARLT+ Sbjct: 837 KGRNAVLYAGEVNYDASGLDGRPRK------IEQVLKSGQSVLVQVSKDPIGHKGARLTS 890 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ++LP RYLV++P + G+S+++ ++ER RLK ++ + E GG I+RTAAEG EAE Sbjct: 891 QVSLPGRYLVYVPDGQNAGISRKL-PDTERARLKSILKKITPENGGVIVRTAAEGASEAE 949 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D L W + + ++ LYGE L RV+RD + + + V Sbjct: 950 LERDIERLVAQWEDIQRKAQKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSHEAAT 1009 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + + P++ ++ Y G +F V+ ++ +AL+RKV L SGG L+ID+TEAMT Sbjct: 1010 VEGYVDTVAPDLRDRVRRYVGTGDVFAEHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMT 1069 Query: 302 TVDINTGAFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+NTG F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R V Sbjct: 1070 VIDVNTGKFTGKGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELV 1129 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L L + L +DR + V ++LGLV+MTRKR + + C C+GRG + +++ Sbjct: 1130 LRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCAHCNGRGVLVHLDSA 1189 >UniRef50_B4RR31 Rne n=31 Tax=Neisseriaceae RepID=B4RR31_NEIG2 Length = 919 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 164/487 (33%), Positives = 257/487 (52%), Gaps = 9/487 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L N T E RVA +DG L ++ IE + GNIYKG ++R+ P ++A FVD G Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL ++ + I +++++G +++VQV KD G KGA LTT Sbjct: 62 TDRHGFLPFKEVSRSYFL-----GYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTT 116 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP GVS+RIE E ER+ LK +A+ I RTA G Sbjct: 117 FISLAGRYLVLMPNNPRGGGVSRRIEGE-ERQELKAAMAQLDIPNGMSIIARTAGIGRSA 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YLK++W + E K Y L+ E +L R +RD+ ++ I VD++ Y Sbjct: 176 EELEWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVY 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + EF S +P +L+ Y P+F F +E++I+ A R V L SGG ++ID TEA Sbjct: 236 DQVAEFMSYVMPGNAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++D+N+ +++DT F TN+EA + +ARQ+RLR+LGG+++IDFIDM N H+R Sbjct: 296 LVSIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRD 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L AL KDR + + S GL+E++R+R + ++ CP C G G ++ +E+ Sbjct: 356 VENVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIES 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 ++R + ++ VA L E+ L +E + V + Sbjct: 416 TALHVLRMVQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHL 475 Query: 480 NQEQFDV 486 +++ Sbjct: 476 ENPHYEI 482 >UniRef50_Q3A2X7 Ribonuclease E n=3 Tax=Bacteria RepID=Q3A2X7_PELCD Length = 926 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 165/488 (33%), Positives = 270/488 (55%), Gaps = 2/488 (0%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT ++L+N T P E RVA ++ GIL E+ IE + GNIYK V+RV G+QAAFVD Sbjct: 1 MTKKMLINATHPEEHRVAIVEDGILSELDIEISGKEQTKGNIYKAVVARVETGLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G ++ FL +I P A + I++++R+GQ+++VQ+VK+ GTKGA L Sbjct: 61 YGSERLGFLQIGEIHPAFFKEAEGRVEAGKRPRINDILRRGQEILVQIVKEERGTKGAAL 120 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 TT ++LP RY+V MP + G+S++IE ES+R++L++++ E+ G+I+RTA Sbjct: 121 TTYLSLPGRYMVLMPDSDTKGISRKIEKESDRKKLRELMDSLEIPEEMGYIVRTAGSTQK 180 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 +L D YL R++ K+ + +Y E L R +RD+ ++D + VD Sbjct: 181 RTDLKRDVDYLLRLFNKIQSLSDSTKAPSLIYKESNLVIRSIRDYFSDDMDEVLVDDAKV 240 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 +F E +PE ++ + R+PIF + +E++I+ + KV L SGG ++ID TE Sbjct: 241 STEARDFFQEVMPEYAELVKLHQERRPIFARYQIEDQIESIGKNKVMLPSGGSIVIDSTE 300 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ +D+N+G + ++ T + TN+EA ARQLRLR+LGG+++IDFIDM + H R Sbjct: 301 ALVAIDVNSGKMASEQGVEATAYKTNLEAAVETARQLRLRDLGGLVVIDFIDMRDRKHIR 360 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 + +L++A+ D+ + ++ S GL+EM+R+R + ++ CP C+G G +KT+E Sbjct: 361 DIEKTLKEAMKTDKARVTIGRISQFGLLEMSRQRIKSALAAASFEVCPHCNGSGKIKTIE 420 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPL 478 +R I R VA L + L +E + ++ P Sbjct: 421 AQSLGFLRRIHTGLAKGRIGRVEATVPLDVASYLLNNKRVELMAIEQKNDVSIHIKGCPD 480 Query: 479 YNQEQFDV 486 Y Q ++ Sbjct: 481 YMNGQGEI 488 >UniRef50_A0LIP4 RNAse G n=22 Tax=Bacteria RepID=A0LIP4_SYNFM Length = 530 Score = 575 bits (1484), Expect = e-163, Method: Composition-based stats. Identities = 233/519 (44%), Positives = 331/519 (63%), Gaps = 30/519 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+AEL++N + ETRVA ++ G + E+HIER + RGI GNIYKGRV +VLPGMQAAFVDI Sbjct: 1 MSAELIINGSAFETRVALVENGQVAELHIERSSDRGIAGNIYKGRVVKVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAG------------------------------EEQKQFTV 90 L+KAAFL+ SDI V + Q+ ++ Sbjct: 61 DLEKAAFLYVSDIHHPMGDVEQLLLSTCEVEPDVEKVDSAREPGAPEFQDVLDLQRYYSS 120 Query: 91 RDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESE 150 I E +++GQ+++VQV K+P+G KGAR+TT ITLP R+LVFMP HVGVS+RIE+E E Sbjct: 121 VPIEERLQEGQEILVQVAKEPIGHKGARITTHITLPGRHLVFMPTMDHVGVSRRIENEVE 180 Query: 151 RERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 R+RL++++ E GFI+RTAAEG +L + +L +VW + R + +Y Sbjct: 181 RKRLREIMCEIKPSHCGFIVRTAAEGAEPEKLQVEVDFLVKVWQNIQRRFESASVPSLVY 240 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 EL + R +RD E+DR+ +DSR ++ + F ++P + S +E Y G +PIFD + Sbjct: 241 QELDITLRAVRDLFTKEVDRLVIDSRSEHKKITNFIETFLPALQSSIELYEGDEPIFDAY 300 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 +E E+QRAL +K+ LKSGGY++I+ TEA+T VD+NTG +VG RNL++TI TN+EA + Sbjct: 301 GIEMEVQRALSKKIWLKSGGYIVIEMTEALTAVDVNTGRYVGKRNLEETILKTNLEAVKE 360 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 IA QLRLRN+GGIIIIDFIDM E +R +V ++L+ A+ KD+ KT++ S LGL+EMTR Sbjct: 361 IAYQLRLRNIGGIIIIDFIDMEKESNREKVCNALKDAMHKDKSKTNILHMSELGLIEMTR 420 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE 450 KRTRESI VLC C C G G +K+ +TVCYEI+RE+ R +V A P VA Sbjct: 421 KRTRESIGQVLCEPCFYCEGEGYLKSRQTVCYEILRELEREKRDLYGQNIMVLAHPEVAA 480 Query: 451 ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM 489 E+ L VE + ++ V+ +P ++ EQ+++ + Sbjct: 481 RFCDEDRGPLERVEETLHARIMVKGDPGFHLEQYEIAPL 519 >UniRef50_C1A932 Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A932_GEMAT Length = 520 Score = 575 bits (1484), Expect = e-163, Method: Composition-based stats. Identities = 187/506 (36%), Positives = 300/506 (59%), Gaps = 18/506 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E+LVN TP ETRVA I+ G L E+ ++R R +VG++Y G+V VLPG+QAAFV+I Sbjct: 1 MKREILVNATPRETRVAIIEDGQLVELLVDRPDARRMVGDVYLGKVEAVLPGIQAAFVNI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFT-----------------VRDISELVRQGQDL 103 G +K+AFLHA+D++ V+ ++ VR I +L+++GQ++ Sbjct: 61 GTEKSAFLHAADVVVEDAQVSDDDDDDEDESGEESGGGGGRRGRREVRPIQDLLKRGQEI 120 Query: 104 MVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCD 163 +VQ+ K+P+ TKG R+T ++L R+LV+MP AS VGVS++I+ SER+RL+ +V E Sbjct: 121 LVQITKEPISTKGPRVTAQVSLAGRFLVYMPFASKVGVSRKIDERSERQRLRAMVGEMLP 180 Query: 164 EQ-GGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRD 222 + GG I+RT +E + + L W ++ + + + ++ E + + ++RD Sbjct: 181 DDAGGVIVRTVSEDATKETFERELQTLINNWKRIKRKTQFTRAPSLVHRETNVTRGLVRD 240 Query: 223 FADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALER 282 A+++R++VDS+ Y + E+ PE+ +++ Y P+FD +E EI+ +R Sbjct: 241 LFSAKVERVQVDSKQVYNEITEYLQGIAPELVERVKLYEENVPLFDKEGIETEIRDLFKR 300 Query: 283 KVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGG 342 + +L SGGYLI + TEA+ ++D+N+G + G R+ + TI TN EA + IARQLRLR++GG Sbjct: 301 RCDLPSGGYLIFEPTEALVSIDVNSGRYTGKRDPEKTILKTNTEAAREIARQLRLRDVGG 360 Query: 343 IIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLC 402 II+ DFIDM + +R +VLH L L +DR +T S LGLVEMTR+R R+S H + Sbjct: 361 IIVCDFIDMETQSNRDKVLHELRTHLGRDRARTKAFAVSDLGLVEMTRQRVRQSHWHSMT 420 Query: 403 NECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAE 462 CPTC G G V T ET+ R + R+ + ++ P VA + +E + Sbjct: 421 EGCPTCSGTGRVFTPETIVRRTERAVRRMAAEGRKEPVVLRLHPEVALHVLEQEHDFMKR 480 Query: 463 VEIFVGKQVKVQIEPLYNQEQFDVVM 488 +E G ++++ +PL ++ +VM Sbjct: 481 LEKMAGFTLELRDDPLLKPDEIKLVM 506 >UniRef50_Q0F3G3 Ribonucleases G and E n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G3_9PROT Length = 727 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 153/484 (31%), Positives = 260/484 (53%), Gaps = 3/484 (0%) Query: 5 LLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N + E+RVA + G L E+ IE + NIYKG+V++V +QAAFV+ G Sbjct: 1 MLINASHDEESRVAIAEDGYLHELDIESAQKTLTKSNIYKGKVTKVEASLQAAFVEYGAA 60 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL S+I P ++ I +++ Q+L+VQVVK+ G KGA LTT I Sbjct: 61 RQGFLSLSEIHPDYWKDGVDKSTNPRNISIQDVLAPKQELLVQVVKEERGNKGAALTTQI 120 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAEL 182 +L RYLV P + G+S+++ E R +K+++++ E G IIRTA + L Sbjct: 121 SLAGRYLVLSPNTTRGGISRKLSDEERRS-MKEILSQLDVPENMGLIIRTAGKDQTLEAL 179 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D YL+R+W ++ + + +Y E LA R +RD ++D I VD+ Y Sbjct: 180 QRDYQYLRRLWDEIRIKSETTPPPALIYLEGDLATRAIRDHFSDDVDEIWVDNHEIYTHT 239 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 F +P ++ Y G+ P+F + +E++ + ER++ L++GG +++D TEA+T+ Sbjct: 240 KAFVHAVLPGKEKLVKLYRGKIPLFRKYGIESQCEEMHEREIRLRTGGSIVLDPTEALTS 299 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+ +++DDT N+EA + IARQLR+R++GG+I+IDFIDM + H ++V Sbjct: 300 IDVNSARATKGKHIDDTALAINLEAAEEIARQLRIRDIGGLIVIDFIDMASRKHGQQVED 359 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L +A D+ + S GL+EM+R+R S+ CP C GRG ++TV+++ Sbjct: 360 MLRKACKGDKARIQFARISRFGLLEMSRQRLHPSVRESTTEPCPRCQGRGFIRTVDSMAL 419 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 +++ + A +V E L + ++A +E Q+ +QI P + Sbjct: 420 QMLTRMEDWAEAGKKPTLVVQVPSDTGEYLMNNKRDNIARIEETYEIQITLQIRPDLDIP 479 Query: 483 QFDV 486 + + Sbjct: 480 HYRI 483 >UniRef50_C8WCX7 Ribonuclease, Rne/Rng family n=3 Tax=Zymomonas mobilis RepID=C8WCX7_ZYMMN Length = 912 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 172/543 (31%), Positives = 264/543 (48%), Gaps = 57/543 (10%) Query: 1 MT-AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFV 58 MT ++L++ ETRVA I G ++E E RR + GNIY +V+RV P +QAAFV Sbjct: 1 MTLTKMLIDARHREETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFV 60 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQK-------------------------------- 86 D G ++ FL S+I P + E+++ Sbjct: 61 DYGGNRQGFLAFSEIHPDYYQIPREDREALLREEEEYSARHNKQQESEDDEEGEDLSDSE 120 Query: 87 ---------------------QFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITL 125 I +++R+ Q L+VQVVK+ G KGA LTT ++L Sbjct: 121 AIRNDANDDSLENLRNRRRHFGRHHYRIQDVIRRRQVLLVQVVKEERGNKGAALTTYLSL 180 Query: 126 PSRYLVFMPG-ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELA 183 RY V MP ++ G+S++I + ++R+RLK ++AE G I+RTA + E+ Sbjct: 181 AGRYCVLMPNTSNGGGISRKISNLADRKRLKSIMAELNLPSSMGCIVRTAGLQRTKTEIK 240 Query: 184 SDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL 243 D YL R+W ++ E+ Q +YG+ L +R +RD E+D I V+ Y A Sbjct: 241 RDFDYLARLWDEIREKTLLSQAPALIYGDSDLVKRAIRDIYSREIDEILVEGDDGYRAAR 300 Query: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 F +P K+ Y P+F F VE ++ + V+LKSGGYL+I+ TEA+ ++ Sbjct: 301 NFMKLLMPSHVRKVRPYADPAPLFQRFGVEAQLNAMYQPIVQLKSGGYLVINPTEALVSI 360 Query: 304 DINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 DIN+G N++ T TN+EA IARQLRLR++ G+I+IDFIDM + + RRV + Sbjct: 361 DINSGRSTREHNIEQTATATNLEAAAEIARQLRLRDMAGLIVIDFIDMESSANIRRVEKA 420 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYE 423 ++ AL DR + V S+ GL+EM+R+R R + CP C G G + T + Sbjct: 421 MKDALKHDRARIQVGHISSFGLMEMSRQRLRTGMLEASTVPCPHCQGSGLMLTTPSAGLM 480 Query: 424 IMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 +R I + + V S A + ++ L +E G + + +PL Q Sbjct: 481 ALRMIEDEASRGNGSQIHVLTSLDSAIYVLNKKRKELGSIETLYGVTILIDGDPLRGNNQ 540 Query: 484 FDV 486 V Sbjct: 541 ISV 543 >UniRef50_A5EVP9 Ribonuclease g n=16 Tax=Gammaproteobacteria RepID=A5EVP9_DICNV Length = 496 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 232/487 (47%), Positives = 346/487 (71%), Gaps = 8/487 (1%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E+LVN TP ETRVA ++ G+L ++ IERE RRGIVGNIYKG+V RVLPGM+AAF+DIGL+ Sbjct: 17 EILVNHTPYETRVALLEDGLLHDVLIERERRRGIVGNIYKGKVQRVLPGMEAAFIDIGLE 76 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 +A FLH +I TE V E + ISE++ +G+ ++VQV+KDP+GTKGARLTT+I Sbjct: 77 RAGFLHMKNISLPTEMVGKE-------QKISEILHEGESILVQVLKDPIGTKGARLTTEI 129 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAEL 182 ++ SR+LVF+P + +GVS +I SE++R+ L++++ E+ ++GGFI+RTA E + Sbjct: 130 SISSRFLVFLPKSHDIGVSIKIVSETQRQNLREMMHEFHRGQEGGFIVRTAIETADFWAM 189 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 +D YL RVW ++ + +YG+L L QRVLRD+ ++ ++ VD Y A+ Sbjct: 190 RADMQYLHRVWDSILTTYRESYASTLIYGDLPLYQRVLRDYISPQVKQVIVDDPEAYRAM 249 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 +F ++ EM ++ Y G + +FD + VE EI+RAL+R+V+LKSGGYL+IDQTEAMTT Sbjct: 250 AQFAGNFLIEMADRITLYDGDRTLFDRYGVEEEIERALKRRVDLKSGGYLMIDQTEAMTT 309 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+NTG FVG + +DTIF TN+EA +AIARQLR+RNLGGII++DFIDM + +H++ V+ Sbjct: 310 IDVNTGGFVGKSSQEDTIFKTNLEAAKAIARQLRIRNLGGIIMLDFIDMTSTEHQQSVVD 369 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +L AL+ D+ K +++ S LG++EMTRKRTRES++ V+C CP C GRG VKT ET+ Y Sbjct: 370 ALLNALAGDKSKYTISPISPLGIIEMTRKRTRESLKQVMCETCPRCSGRGYVKTTETIVY 429 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 E+ R+++R Y V +P E ++ EES + ++++I + +++Q + Y+Q+ Sbjct: 430 ELFRDLMREAREYAPKGMTVIGNPDFIEFIREEESMAFSDLQILLKMPIRLQSDGAYSQD 489 Query: 483 QFDVVMM 489 ++D+VMM Sbjct: 490 KYDIVMM 496 >UniRef50_Q2RSE6 RNAse E n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RSE6_RHORT Length = 889 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 162/530 (30%), Positives = 260/530 (49%), Gaps = 45/530 (8%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT +L++ P ETRV +DG L E +E ++ + GNIY +V RV P +QAAFV+ Sbjct: 1 MTKRMLIDANHPEETRVVVLDGTRLDEFDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQF------------------------------- 88 G ++ FL ++I P + ++++ Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREKLIAEEALEAAADDDDEADSVETLGGDEAEDSA 120 Query: 89 ----------TVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGA-S 137 I E++++ Q ++VQVVK+ G KGA LTT ++L RY VFMP Sbjct: 121 PAPRAKSRVSRSYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVFMPNTTR 180 Query: 138 HVGVSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKV 196 GVS++I S ++R+RLK ++ E + I+RTA AE+ D YL R W + Sbjct: 181 GGGVSRKITSATDRKRLKSIMGELIGPKGSAVILRTAGSERSRAEIRRDHDYLLRTWDSI 240 Query: 197 MERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSK 256 + + ++ E +L +R +RD +++ I V+ Y +F P K Sbjct: 241 RQTTLASRAPCLIHEEGSLIKRAIRDIYSRDIEEILVEGDAGYRTAKDFMKMLTPSHAKK 300 Query: 257 LEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y P+F + VE+++ +L+SGGYL+I+QTEA+ +D+N+G RN Sbjct: 301 VQPYKDEIMPLFHRYQVESQMDAMHSPIAQLRSGGYLVINQTEALVAIDVNSGRSTRERN 360 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 +++T + TN+EA IARQLRLR+L G+I+IDFIDM++ V ++ AL DR + Sbjct: 361 IEETAYKTNLEAADEIARQLRLRDLSGLIVIDFIDMDDPRSNANVERRVKDALRNDRARI 420 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 + S GL+EM+R+R R S+ CP CHG G++++VE+ I+R I Sbjct: 421 QLGRISHFGLLEMSRQRLRPSLMETSFQPCPHCHGSGSLRSVESTAIHILRIIEEEGVRR 480 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFD 485 S V A+A + + LA +E QV + + + Sbjct: 481 RSSEVTVTVPTAIALYILNNKRTVLAAIEARYDFQVFLLGDDTLIVPDYR 530 >UniRef50_Q1PY04 Strongly similar to ribonuclease E (RNase E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PY04_9BACT Length = 509 Score = 574 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 184/490 (37%), Positives = 287/490 (58%), Gaps = 5/490 (1%) Query: 2 TAELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 +L+N P E R+A ++ IL+E++IER +R I GNIYKGRV + P ++AAFVDI Sbjct: 8 KTRMLINAIEPEECRIAILENNILEELYIERSSREQIAGNIYKGRVVNIEPNLEAAFVDI 67 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTV---RDISELVRQGQDLMVQVVKDPLGTKGA 117 GL K FLHASD++ +E E+ I ++++QG++++VQV K+ LGTKG Sbjct: 68 GLKKNGFLHASDVLVPSEGKNQGEEADPPPVRHHRIRDVLQQGKEILVQVTKESLGTKGP 127 Query: 118 RLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEG 176 LTT I+LP RYLV MP GVS++I E ER+RLKK++ + GFI+RTA Sbjct: 128 SLTTYISLPGRYLVLMPEVKRYGVSKKITEEEERQRLKKILESLNPPKNIGFIVRTAGVQ 187 Query: 177 VGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSR 236 + EL D YL ++W + ++ K +Y E L RV+RD +++ I VDS Sbjct: 188 QTKRELQKDFHYLLKLWKNICKKSKEIDAPGVIYQESDLVIRVIRDIFSQDINEIIVDSE 247 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 ++ EF +P+ +L+ Y +P+F F +EN I+ RK+ L GG ++++Q Sbjct: 248 SVFKRTREFLRIIMPKYEKQLKFYNKEKPLFHNFGIENAIEEINSRKIPLLHGGSIVLEQ 307 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+ +D+N+G + G + ++T F TN+ A + IARQ+RLR+LGG+I+IDFIDM NE H Sbjct: 308 TEALVAIDVNSGKYKGKCDPEETAFRTNMIAAKEIARQIRLRDLGGVIVIDFIDMRNEKH 367 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 + V ++ +L + R +T + S G +E+TR+R R S+ VL EC C G G KT Sbjct: 368 IQAVEKAIADSLKRHRARTKMLKMSKFGTIEITRQRIRPSLRDVLFEECKFCCGTGYAKT 427 Query: 417 VETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIE 476 VE++C IMR++ H R + ++ V + L+ ++ +AE+E K++ + + Sbjct: 428 VESLCLNIMRDVKFALHLPQVVRIEITSNNDVVDYLQNQKRKQMAEIEDAYNKKIVIFTD 487 Query: 477 PLYNQEQFDV 486 + D+ Sbjct: 488 TANEYGKIDI 497 >UniRef50_A8PMW2 Ribonuclease E (RNase E) n=1 Tax=Rickettsiella grylli RepID=A8PMW2_9COXI Length = 778 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 157/492 (31%), Positives = 270/492 (54%), Gaps = 13/492 (2%) Query: 2 TAELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 +L+N P E RVA ++ L ++ +E + NIYKG++SR+ ++AAF+ Sbjct: 5 KNRILINANQPGEIRVALLEANKLSDLDMEYTGQEQKKSNIYKGKISRIEQSLEAAFISY 64 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G ++ FL +I P + K + ++ I ++ GQ+LMVQ+ K+ G KGA LT Sbjct: 65 GAERHGFLPFKEIAPSYL-----KGKNYDLQSIKHSLKVGQELMVQIEKEERGDKGAALT 119 Query: 121 TDITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEYCD-----EQGGFIIRTAA 174 T ITLP YLV MP G+S+RIE + ER ++ ++ + + + G I+RTA Sbjct: 120 TYITLPGSYLVLMPNNPGAGGISRRIEGD-ERREMQDLMHDLIEQTELSKNMGLILRTAG 178 Query: 175 EGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVD 234 G +EL +D L + W + + + ++ E L R +RD+ ++D I VD Sbjct: 179 VGREFSELKNDLNLLIQQWNAIQKAYHERPAPFLIFQEGDLITRSVRDYLRRDIDEIIVD 238 Query: 235 SRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLII 294 + +E + ++ + P+ S++ Y P+F FD+E ++ A +RK+EL SG ++I Sbjct: 239 DKKIHEKIKQYIEQIRPDFVSRISLYQNHIPLFMYFDIEEAVESAFKRKIELPSGATIVI 298 Query: 295 DQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 D+TEA+ ++DIN+G + ++++T TN+EA + IA QLR+R+LGG+I+IDFIDMN+E Sbjct: 299 DRTEALVSIDINSGRSTKNEDIEETAVATNLEAAKEIAHQLRVRDLGGLIVIDFIDMNSE 358 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 +++R+V + A+ KDR + + S GL+EM+R+R R S+ C C+G+GTV Sbjct: 359 ENQRKVENCFRLAVKKDRARIQIGRISTFGLLEMSRQRLRHSLGKANETLCSRCNGQGTV 418 Query: 415 KTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ 474 +T+E+ ++R I + + V +A L E+ +L +E + + Sbjct: 419 RTIESFALFLLRSIEKETLKKSTQHIRVELPVDIATYLFNEKRLALQHIEHQYNVNLLLI 478 Query: 475 IEPLYNQEQFDV 486 P + Q+ + Sbjct: 479 PNPYWQSPQYKI 490 >UniRef50_B8FM65 Ribonuclease, Rne/Rng family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FM65_DESAA Length = 529 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 205/518 (39%), Positives = 307/518 (59%), Gaps = 31/518 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +L++N ETRVA ++ G L E++IER IV NIYKGRV RVLPGMQAAFVDI Sbjct: 1 MEKKLIINDAGFETRVALVEDGALAELYIERTGESDIVSNIYKGRVMRVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVA-------------------------------GEEQKQFT 89 GLD+AAF++ D++ + Sbjct: 61 GLDQAAFIYVDDVVMDFPSDETGSPLIHEDEEDQEVILLDAEDDDDEIEEAARIIRPPRI 120 Query: 90 VRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESES 149 I +++R+GQ++MVQV K P+G KGAR+T+ IT+P R+LV MP +H+GVS+RI Sbjct: 121 RPSIEDMIREGQEIMVQVAKSPIGKKGARVTSRITIPGRFLVLMPTTNHIGVSRRITDSG 180 Query: 150 ERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQL 209 ER RLK+ + E E G+I+RT EG+G +L + +L RVW +V+ R + L Sbjct: 181 ERNRLKEQLMEARVEPFGYIVRTVCEGIGPEKLTHEVEFLTRVWKRVVHRYWQCSAPSLL 240 Query: 210 YGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDL 269 + EL+ + R +RD E+DR+ +DS Y + +F +P + +++Y R+PIFD Sbjct: 241 HQELSASLRSVRDLFTKEVDRLVIDSERGYREIQDFLEPNMPGLRDAVQYYDRREPIFDA 300 Query: 270 FDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQ 329 + +E +I R +KV LKSGGY++I++TEA+ ++D+NTG +VG +L +TI TN+EA + Sbjct: 301 YQLEGDISRLGRKKVWLKSGGYIVIEETEALVSIDVNTGRYVGKGDLSETILKTNLEALK 360 Query: 330 AIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMT 389 IA QLRLR++GGII+IDFIDM + R +V L + L KDR T+V S +GL++MT Sbjct: 361 EIAYQLRLRDIGGIIVIDFIDMEKLEDRDKVYQVLVETLKKDRSTTNVLPMSEMGLIQMT 420 Query: 390 RKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVA 449 RKRTRE+I L C C G G V + +++C+ I REI+R + R V A P +A Sbjct: 421 RKRTRENINRQLSEPCAYCEGEGIVLSKKSICHNIYREILRQSYDIQGSRISVKAHPEIA 480 Query: 450 EALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 L EE+ ++ +E + + +Q +P + E+F+++ Sbjct: 481 RFLLEEENITVLSLEQRIETPILIQADPALHIERFEIM 518 >UniRef50_C0VHW5 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHW5_9GAMM Length = 1143 Score = 570 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 167/487 (34%), Positives = 255/487 (52%), Gaps = 9/487 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA I G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 22 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 81 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I + +I EL+ +G +L+VQV K+ G KGA L+T Sbjct: 82 AQRQGFLSMREIANSYF-----KADPRQTSNIRELITEGTELLVQVEKEERGNKGAALST 136 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S++I S S RE LK+++A I+RTA G + Sbjct: 137 FISLAGRYLVLMPNNPKGGGISRQI-SGSVREELKEILATLNIPRGMSVIVRTAGIGRTQ 195 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D +L +W ++ + ++ E + R +RD+ ++ I +DS Y Sbjct: 196 EELQLDLQHLLDLWAQIQSSASTGPSPMLVHQEAGVVTRAIRDYLRDDVGEILIDSEQAY 255 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 F +P KL+ YT +P+F F +E++IQ A ER+V+L SGG ++IDQTEA Sbjct: 256 NEAYNFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEA 315 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T NTN+EA + IARQLRLR++GG+++IDFIDM + ++R Sbjct: 316 LVSIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRM 375 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V L +A DR + S GL+EM+R+R R S+E CP CHG G V+ + + Sbjct: 376 VEAKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 435 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR++ + V +A L E+ HSL +E +V V P Sbjct: 436 LSLSIMRKVEEIALRERQGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSNVRVTVLPHPHL 495 Query: 480 NQEQFDV 486 + + Sbjct: 496 ETPHYQI 502 >UniRef50_A1HNZ2 Ribonuclease, Rne/Rng family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNZ2_9FIRM Length = 473 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 185/488 (37%), Positives = 290/488 (59%), Gaps = 20/488 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++ ++ P E+R+A ++ G L E +ER A +VGNIYKG+V VLPGMQAAF+DI Sbjct: 1 MGKTIIASIMPEESRMALVEDGELVEYVLERSATGHLVGNIYKGKVKNVLPGMQAAFIDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK A+L+ + + GQD+++Q+VKD G+KG R T Sbjct: 61 GGDKNAYLYVG-----------------HADANAGRLTVGQDILIQIVKDASGSKGPRTT 103 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T + LP RY V P + GVS+RIE ++ER+RL+++ + + G I+RTAA G E Sbjct: 104 TGLMLPGRYAVLAPYSDGTGVSRRIEDDAERKRLRQLADKVKPDGVGMIVRTAAAGCSET 163 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 ELA D YL +W + R KR LY ++ LA R++RD+ D ++ + +D+R Y Sbjct: 164 ELARDVEYLHNLWAALAARAKRSPAPALLYRDVDLAIRIVRDYLDDDVTEVVIDNRDAYG 223 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + P +K++ Y + IF + + ++ R L+R+VEL GG+L+IDQTEA+ Sbjct: 224 RVCDLLQHLAPAALAKVKFYQYPEDIFVHYGIAADLNRLLKREVELACGGFLVIDQTEAL 283 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG FVG +L DT+F N+EA IARQLRLR++GGIII+DFIDM +H++ V Sbjct: 284 TVIDVNTGRFVGDTSLSDTVFRVNMEAAAEIARQLRLRDIGGIIIVDFIDMAKAEHKQAV 343 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L L + + +DR ++ + G ++LGLVE+TRK+ R+ + ++ +ECP C GRG +++ ETV Sbjct: 344 LAFLAEKMRRDRTRSKILGLTSLGLVEITRKKGRQDLNSLMYSECPCCAGRGRIQSPETV 403 Query: 421 CYEIMREIVRVHHAYD-SDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 I R + + R ++ A P V E L + LA +E + +++ ++ P Sbjct: 404 AINIRRHLRWAAAQRKLASRLVIQAHPQVVEILSRQ--GELARLERELARKLTLESAPAM 461 Query: 480 NQEQFDVV 487 + E + ++ Sbjct: 462 HPECYSIL 469 >UniRef50_B0VED2 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=16 Tax=Acinetobacter RepID=B0VED2_ACIBY Length = 1110 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 169/487 (34%), Positives = 257/487 (52%), Gaps = 9/487 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA I G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I + +I EL+ +G +L+VQV K+ G KGA L+T Sbjct: 62 AGRQGFLSMREIANSYFQADPRQ-----TSNIRELITEGTELLVQVEKEERGNKGAALST 116 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S++I S S RE LK+++A I+RTA G + Sbjct: 117 FISLAGRYLVLMPNNPKGGGISRQI-SGSVREELKEILASLNVPRGMSVIVRTAGIGRTQ 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D +L +W ++ + ++ E + R +RD+ ++ I +DS Y Sbjct: 176 EELQLDLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAY 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 F +P KL+ YT +P+F F +E++IQ A ER+V+L SGG ++IDQTEA Sbjct: 236 NEAYNFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T NTN+EA + IARQLRLR++GG+++IDFIDM E ++R Sbjct: 296 LVSIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRM 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V L +A DR + S GL+EM+R+R R S+E CP CHG G V+ + + Sbjct: 356 VEAKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR++ + V +A L E+ HSL +E G +V V P Sbjct: 416 LSLSIMRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHL 475 Query: 480 NQEQFDV 486 +++ Sbjct: 476 ETPHYEI 482 >UniRef50_C9R616 Ribonuclease E (RNase E) n=2 Tax=Gammaproteobacteria RepID=C9R616_AGGAD Length = 960 Score = 569 bits (1467), Expect = e-161, Method: Composition-based stats. Identities = 158/485 (32%), Positives = 253/485 (52%), Gaps = 7/485 (1%) Query: 5 LLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE NIYKG+++RV P ++AAFVD G + Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I Q + +RDI + +GQ+++VQV K+ G KGA LTT + Sbjct: 61 RHGFLPLKEIAREYFPSGYVYQGRPNIRDI---ISEGQEVIVQVNKEERGNKGAALTTFV 117 Query: 124 TLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAE 181 +L YLV MP G+S+RIE + ER LK ++ E G I+RTA G E Sbjct: 118 SLAGSYLVIMPNNPRAGGISRRIEGD-ERLELKDALSSLDVPEGVGLIVRTAGVGKSPEE 176 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D L W + + + + ++ E + R +RD+ ++ I +DS YE Sbjct: 177 LQWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEK 236 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 P+ ++++ Y G P+F + +E++I+ A +R+V L SGG ++ID TEA+T Sbjct: 237 AKAHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALT 296 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +DIN+ ++++T NTN+EA IARQLRLR+LGG+I+IDFIDM H+R V Sbjct: 297 AIDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE 356 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 + + A+ +DR + ++ S GL+EM+R+R S+ + CP C G G ++ E++ Sbjct: 357 NRVRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLS 416 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQ 481 I+R + ++ + +A L E+ ++ +E + V Sbjct: 417 LSILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHTVDILVVPNEAMET 476 Query: 482 EQFDV 486 F V Sbjct: 477 PHFSV 481 >UniRef50_B8IYX2 Ribonuclease, Rne/Rng family n=10 Tax=Desulfovibrionales RepID=B8IYX2_DESDA Length = 1076 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 159/478 (33%), Positives = 260/478 (54%), Gaps = 3/478 (0%) Query: 3 AELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 + ++V P E VA + G L E +++ +R I GNIYKG + + +QAAFV G Sbjct: 599 RRMFISVLPGEQVEVALTEDGQLLEYYLDMLHQRKIKGNIYKGVIHNIDTNLQAAFVSYG 658 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 K FL +I P E K I ++++ GQ+++VQVVK+P G+KGA LTT Sbjct: 659 AGKNGFLQIDEIHPEYWLTHHEPAKGKKFPPIQKVLKAGQEVLVQVVKEPTGSKGAFLTT 718 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEA 180 ++L R+LV PG +GVS++++ E ER RL++++ QG G I+RT + G + Sbjct: 719 WLSLAGRFLVLTPGQEQIGVSRKVDDEEERSRLREMMNGIDPGQGLGVIVRTVSAGTTKT 778 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L +D YLKRVW + ++ +Y E L++R +RD+ ++ I VD+ + Sbjct: 779 TLKNDLQYLKRVWRDIRKKATEVTAPSLIYQEPGLSERAVRDYLTDDVGEIWVDNEDVAQ 838 Query: 241 ALLEFTSEYIPEMTSKLEHYTG-RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 ++ E + P + + ++ R +++ F + ++ + R+V L SGG L+ DQTEA Sbjct: 839 SIRETVNLLFPRKSDLVRLHSDVRTSMWERFSLRRQLDQIYTREVLLPSGGRLVFDQTEA 898 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + VDIN+G G N + TN+EA + IAR L+LR++GG ++IDFI+M ++ H Sbjct: 899 LMAVDINSGKISGKGNFEAMAHKTNMEAAETIARHLKLRDIGGQVVIDFIEMRDKKHIIE 958 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V +L A+ DR + V SA GL+E+ R+RT S + CP C G G + +E Sbjct: 959 VEKTLRSAMKNDRARHDVGRMSAFGLLELVRQRTGSSALAITMEPCPACGGTGQRRNLEW 1018 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 + +RE+ R+ A ++ + S +A L + SL E+E GK +++ + P Sbjct: 1019 QALQALRELRRMLRAESKEKCVYGTSAELALYLLNHKRDSLREMEQDYGKCLEISVRP 1076 >UniRef50_Q6FEY0 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FEY0_ACIAD Length = 1138 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 168/487 (34%), Positives = 258/487 (52%), Gaps = 9/487 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA I G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I + +I EL+ +G +L+VQV K+ G KGA L+T Sbjct: 62 AQRQGFLSMREIASSYLHADPRQ-----TSNIRELITEGTELLVQVEKEERGNKGAALST 116 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S++I S S RE LK+++A I+RTA G + Sbjct: 117 FISLAGRYLVLMPNNPKGGGISRQI-SGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQ 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D +L +W+++ + ++ E + R +RD+ ++ I +DS Y Sbjct: 176 EELQLDLQHLLDLWSQIQSTSNSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAY 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 F +P KL+ YT +P+F F +E++IQ A ER+V+L SGG ++IDQTEA Sbjct: 236 NEAYNFVKAVMPRQLDKLKTYTLNEPLFAHFAIESQIQTAYEREVKLPSGGSIVIDQTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T NTN+EA + IARQLRLR++GG+++IDFIDM + ++R Sbjct: 296 LVSIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRM 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V L +A DR + S GL+EM+R+R R S+E CP CHG G V+ + + Sbjct: 356 VEAKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR++ + V +A L E+ HSL +E G +V V P Sbjct: 416 LSLSIMRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHL 475 Query: 480 NQEQFDV 486 +++ Sbjct: 476 ETPHYEI 482 >UniRef50_B6BTS7 Ribonuclease E n=2 Tax=Betaproteobacteria RepID=B6BTS7_9PROT Length = 738 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 153/487 (31%), Positives = 268/487 (55%), Gaps = 8/487 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L N T E RVA I+ ++++ ER +R NIYKG ++RV P ++AAFV+ G Sbjct: 2 KRMLFNATQSEEIRVAIINDSTIEDLDYERSSREQRKSNIYKGTITRVEPSLEAAFVNYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 +D+ FL +I ++ + I++++ +GQ+++VQV K+ G KGA LTT Sbjct: 62 VDRHGFLPFKEISKEFYS----KKSRKKNLSIADVINEGQEVIVQVSKEERGNKGAALTT 117 Query: 122 DITLPSRYLVFMPG-ASHVGVSQRIESESERERLKKVVAEYCD-EQGGFIIRTAAEGVGE 179 ++L RY+V MP + G+S+RIE + ER K+V+++ + I RTA G Sbjct: 118 FLSLAGRYIVLMPNSSESGGISRRIEGD-ERSNFKEVLSQLKVKKGMSVIGRTAGIGASV 176 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 E+ D YL ++ + + + + +Y E L R +RD+ + +++ I +D++ Y Sbjct: 177 EEIQWDLDYLTQLSEAIQGASGQQEAPFLIYQESNLVIRAIRDYFNTDIEEILIDNQDIY 236 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + +F + +P+ +++ Y +F F++EN+I+ A R+V+L SGG ++ID TEA Sbjct: 237 DQASQFMNHVMPDYADRIQLYEESTALFSKFNIENQIESAFLREVQLPSGGVIVIDHTEA 296 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++D+N+ R++++T FNTN+EA + +A+QLRLR++GG+I++DFIDM N H+R Sbjct: 297 LVSIDVNSSRSTKGRDIENTAFNTNLEAAREVAKQLRLRDIGGLIVVDFIDMENPKHQRE 356 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V L AL D+ + S GL+E++R+R R SI ECP C+G G ++ ++ Sbjct: 357 VEECLRDALKHDKARIQTGRISRFGLMELSRQRLRPSIGETSNGECPKCNGTGRIRDFQS 416 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 I+R I + + V VA L E+ + + E ++ + + Sbjct: 417 SALHIIRMIQEQSNKKQGQKISVQVPVDVATFLLNEKREIIIQTESEGNNKIFIIANKYF 476 Query: 480 NQEQFDV 486 + QF + Sbjct: 477 DVPQFKI 483 >UniRef50_D1AAW2 Ribonuclease, Rne/Rng family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAW2_THECD Length = 1041 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 168/450 (37%), Positives = 261/450 (58%), Gaps = 22/450 (4%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 +++ T++A ++ G+L E +++R + + VGN+Y G+V VLP M+AAFVDIG + Sbjct: 511 MVICQRGERTQIAVLEDGVLVEHYVDRASHQSYVGNVYLGKVQNVLPSMEAAFVDIGKGR 570 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 A L+A ++ + G+ R I + ++ GQ ++VQV KDP+G KGARLT+ I+ Sbjct: 571 NAVLYAGEVNWDVAGLVGQP------RRIEQALKSGQSVLVQVTKDPVGHKGARLTSQIS 624 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 LP RYLV++P S G+S+++ + ER RLK+V+ + + G I+RTAAEG E ELA Sbjct: 625 LPGRYLVYVPDGSMTGISRKL-PDKERSRLKQVLKKIMPDNAGVIVRTAAEGATEEELAG 683 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 D A L W + ++ K L+GE L RV+RD + + ++ V ++ + E Sbjct: 684 DIARLSAQWEHIHKQAKTASAPALLHGEPDLTIRVVRDIFNEDFSKLVVSGDTAWDMVSE 743 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 + P + +LE + Q + + ++ +I +ALERKV L SGG L+ID+TEAMT VD Sbjct: 744 YVGYVAPHLAERLERWESDQDVLSAYRIDEQIAKALERKVWLPSGGSLVIDRTEAMTVVD 803 Query: 305 INTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R VL Sbjct: 804 VNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRR 863 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY- 422 L + LS+DR K V ++LGLV+MTRKR + + C C+GRG V + Sbjct: 864 LLECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEAFSEPCECCNGRGIHIQTTPVEHG 923 Query: 423 -------------EIMREIVRVHHAYDSDR 439 ++ R + +++++ Sbjct: 924 SDKSGGRRRKRKGDVERAVEEKLAKHEAEK 953 >UniRef50_Q492Q0 Ribonuclease E n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=Q492Q0_BLOPB Length = 866 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 153/492 (31%), Positives = 259/492 (52%), Gaps = 9/492 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG++ R+ P ++A FVD G Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 +++ FL +I + +F +I E++ +GQ+L+VQ+ K+ G KGA LTT Sbjct: 62 VERHGFLPIKEISHEYFLSSPSSYNKF---NIKEILCEGQELIVQIDKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP G+S+RIE +R LK++++ E IIRTA G Sbjct: 119 FISLAGSYLVLMPNNPKSSGISRRIEGN-DRIGLKEILSTLELPEGMSLIIRTAGLGKSI 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D + W + + + ++ + + R RD+ ++ I +D+ Sbjct: 178 EALEWDLTSRLQHWKTIKNTAAKHLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIM 237 Query: 240 EALLEFTSEYI-PEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 E + P+ T K++ Y G P+F + +E++I+ A +R+V L SGG ++ID TE Sbjct: 238 HLAKEHITSLGRPDFTKKIKFYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTE 297 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +DIN+ +++DT F+TN+EAT IARQLRLR++GG+I+IDFIDM H+R Sbjct: 298 ALTAIDINSARSTKGTDIEDTAFHTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQR 357 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 + +SL+ A+ +DR + + S GL+E++R+R S+ + CP C G G+++ E Sbjct: 358 EIENSLKIAVHQDRARIQIGHISKFGLLELSRQRLSTSLGESSHHICPRCSGTGSIRDNE 417 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFV-GKQVKVQIEP 477 ++ I+R I ++ A+A L E+ +++++E G + + Sbjct: 418 SLSLSILRLIEEEALKDNTYEVHAIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYE 477 Query: 478 LYNQEQFDVVMM 489 +++ + Sbjct: 478 QMKTPNYEIRRI 489 >UniRef50_A8ZW09 Ribonuclease, Rne/Rng family n=2 Tax=Desulfobacteraceae RepID=A8ZW09_DESOH Length = 499 Score = 563 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 164/490 (33%), Positives = 270/490 (55%), Gaps = 8/490 (1%) Query: 1 MTAELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT ++L+N E R+A + L E H+E +R NIYKG V+RV P +QA FVD Sbjct: 1 MTDKILINAVDTEECRIARVKDNRLCEFHLETTSRVTTKSNIYKGLVARVEPSLQAVFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G ++ FL DI + + I +L++ GQ+++VQVVKDP+ KGA L Sbjct: 61 YGEERHGFLQKHDIHTDYFQDSKVDG------SIRDLIKPGQEMLVQVVKDPIMHKGAAL 114 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 TT +++P R+ V MPG+ GVS++IE E ER+RLK++V+ E G I+RTAA+G Sbjct: 115 TTFLSIPGRFCVLMPGSVTKGVSKQIEDEEERKRLKEIVSGLRVPENFGVILRTAAKGAA 174 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + +A D +YL R+W + + + ++ E A R +RD+ A++ I +D Sbjct: 175 KTVIAKDLSYLMRLWKTIKKEGMNQKAPAAIHKERDFAVRAIRDYLTADIQEILIDEPAV 234 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 ++ + +F + P+ + Y G +PIF ++E++I+ E +V+L SGG +++ QTE Sbjct: 235 HQEVKDFVALVSPKHAKIVRLYQGAKPIFTKHELESQIESIFENRVQLPSGGSIVLTQTE 294 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ ++D+N+G ++++T TN+EA + IARQLRLR++GG+I+IDFIDM + Sbjct: 295 ALVSIDVNSGKSRQKHSIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMKPRKNNA 354 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V +L+ + +D+ +T V S GL+EM+R+R R+SIE C C GRG V E Sbjct: 355 AVERALKAHVKEDKARTDVGKISKFGLLEMSRQRLRQSIETSSMVTCGHCGGRGYVMATE 414 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPL 478 + ++R + + VA+ L ++ L E+E + + +P Sbjct: 415 KLGINVLRRLRLESLKHRGVAVTATVPAVVADYLLNKKRTELLELEARRDLAITITGDPA 474 Query: 479 YNQEQFDVVM 488 + + D+ Sbjct: 475 MHLGESDIRF 484 >UniRef50_D2SCS1 Ribonuclease, Rne/Rng family n=39 Tax=Bacteria RepID=D2SCS1_9ACTO Length = 1048 Score = 562 bits (1450), Expect = e-159, Method: Composition-based stats. Identities = 163/421 (38%), Positives = 248/421 (58%), Gaps = 9/421 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++++ T++A ++ +L E ++ + GN+Y GRV VLP M+AAF+DIG Sbjct: 385 DRKMVIRQRGERTQIAVLEDDVLVEHYVTQAQATSFAGNVYLGRVQNVLPSMEAAFIDIG 444 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ ++G++ R I + ++ G ++VQV KDP+G KGARLT Sbjct: 445 KGRNAVLYAGEVNWDAAGLSGKQ------RSIEQALKSGDKVLVQVTKDPIGHKGARLTQ 498 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 + LP R+LV++PG S G+S+++ ++ER+RLK V+ + E G IIRTAAEG E E Sbjct: 499 QVNLPGRFLVYVPGGSMTGISRKL-PDTERQRLKDVLKKIVPEDAGVIIRTAAEGASEEE 557 Query: 182 LASDAAYLKRVWTKVMERKKRPQ-TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L D L+ W + + + LYGE LA RV+RD + + + V ++ Sbjct: 558 LTRDVNRLQAQWDVIQRKAESSSNAPSLLYGEPDLAIRVIRDVFNEDFKELVVQGDDAWD 617 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + + PE+ +L +TG +F ++ ++ +AL+RKV L SGG L+ID+TEAM Sbjct: 618 TVEAYVAHVSPELVGRLTRHTGEGDVFRDLRIDEQLAKALDRKVWLPSGGSLVIDRTEAM 677 Query: 301 TTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 T VD+NTG F G NL+ T+ N+EA + I RQLRLR++GGII+IDFIDM E +R Sbjct: 678 TVVDVNTGKFTGSGGNLEQTVTRNNMEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDL 737 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 VL L + L +DR K V ++LGLV+MTRKR + + V C C GRG V ++ Sbjct: 738 VLRRLTECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEVFSEPCEHCRGRGVVVHIDP 797 Query: 420 V 420 V Sbjct: 798 V 798 >UniRef50_B4RCR6 Ribonuclease, Rne/Rng family protein n=4 Tax=Alphaproteobacteria RepID=B4RCR6_PHEZH Length = 896 Score = 562 bits (1450), Expect = e-159, Method: Composition-based stats. Identities = 158/530 (29%), Positives = 253/530 (47%), Gaps = 55/530 (10%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ +L++ ETRV +DG ++E E + R+ + GNIY +V+RV P +QAAFV+ Sbjct: 1 MSKTMLIDAAHAEETRVVVVDGNRVEEFDFESQNRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTEC---------------------------------------- 79 G ++ FL ++I P Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREALLREEAEEDDDDRHEPRARAPEDEDEVDLSGS 120 Query: 80 -----------VAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSR 128 +A ++ I E++R+ Q ++VQVVK+ G KGA LTT ++L R Sbjct: 121 ADDEDDVVEEELARRRRRLMRRYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGR 180 Query: 129 YLVFMPG-ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDA 186 Y V MP A G+S++I + ++R+RLK +V G I+RTA +AE+ D Sbjct: 181 YGVLMPNTARGGGISRKITTATDRKRLKSIVQSLDVPAGMGLIVRTAGAKRTKAEIKRDY 240 Query: 187 AYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFT 246 YL R+W + E +Y E L +R +RD D ++D + V+ ++ +F Sbjct: 241 DYLLRLWENIRETTLHSIAPALIYEEEDLVKRAIRDLYDKDVDNVWVEGEAGFKEARDFM 300 Query: 247 SEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDIN 306 +P K++ Y P++ VE+ + + V L+SGGYL+I+QTEA+ +D+N Sbjct: 301 RMLMPSQAKKVQLYREPTPLYVKHKVEDHLSQIYSPVVPLRSGGYLVINQTEALVAIDVN 360 Query: 307 TGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQ 366 +G RN++ T TN+EA + ARQLRLR+L G+I+IDFIDM+ + R V L+ Sbjct: 361 SGRATRERNIEATALKTNMEAAEEAARQLRLRDLAGLIVIDFIDMDEAKNNRAVEKKLKD 420 Query: 367 ALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMR 426 L DR + + S GL+E++R+R R + + C C G G V++VE+ +R Sbjct: 421 CLKDDRARVQMGKISPFGLMEISRQRRRTGVLEGTTHVCEHCGGTGRVRSVESSALAALR 480 Query: 427 EIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIE 476 + + AV + E+ LA + G V V I+ Sbjct: 481 ALEIEALKG-GGEATLTVPRAVGLYILNEKRGHLARLHHAFGLFVTVLID 529 >UniRef50_Q1NUM8 Ribonuclease E and G n=2 Tax=Deltaproteobacteria RepID=Q1NUM8_9DELT Length = 715 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 152/481 (31%), Positives = 270/481 (56%), Gaps = 5/481 (1%) Query: 4 ELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +LL+N P E R+A ++ ++ +IE +R I GNIYKGRV+ V +QAAFVDIGL Sbjct: 223 KLLINTDEPEECRLALLENSKVEGFYIESVSRARIKGNIYKGRVTSVEANLQAAFVDIGL 282 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K FL ++I P + + + I ++V++GQ+++V+VVK+ G KG LTT Sbjct: 283 EKNGFLSFNEIHPEYYQQEVDPETSWKNLKIQDMVKKGQEVLVEVVKEGSGNKGPSLTTY 342 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAE 181 ++LP R+LV MPG+ G+S++I+ E R +L+++V E G+I+RTA++ + + Sbjct: 343 LSLPGRFLVLMPGSDSAGISRKIDDEEHRNKLREMVEGLNIPEGVGYIVRTASQEITKTA 402 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L+ D +L +W+++ + + LY E + R LRD +++ I VD E Sbjct: 403 LSQDLRFLLNLWSEIRKGGQSLPAPSLLYKEQNIISRFLRDHYTSDIREILVDEEDAAEQ 462 Query: 242 LLEFTSEYIPEMTSK--LEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + F K ++ + G QPIF + VE +I+ + V L SGG ++I+ TEA Sbjct: 463 VRNFLQLLPASQRKKTTVKLHQGSQPIFHQYHVEKQIEEMFQPTVPLPSGGSIVINPTEA 522 Query: 300 MTTVDINTGAFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 + +D+N+G R+ +++IF N+EA + +ARQLR+R+LGG+I++DFIDM + H R Sbjct: 523 LVAIDVNSGRTSSKDRDFEESIFIANMEAAEELARQLRMRDLGGLIVVDFIDMRSAAHTR 582 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V + + + +D+ K + S GL++++R++ ++ CP C GRG +++VE Sbjct: 583 EVEKKVRECMKRDKAKVDFSKISKFGLMQISRQKMAAPLQTTSYKTCPYCEGRGLIRSVE 642 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPL 478 + +R+I + + + VA+ + ++ L E+E G ++ ++++ Sbjct: 643 NLALSHLRQIQTGMSRRRAKKVVCQLPMEVAQYILNKKREELLELEKEYGAEIVIEVDAA 702 Query: 479 Y 479 Sbjct: 703 M 703 >UniRef50_C7Q8B4 Ribonuclease, Rne/Rng family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q8B4_CATAD Length = 1334 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 164/419 (39%), Positives = 249/419 (59%), Gaps = 10/419 (2%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 ++V + T++ ++ G+L E ++ R VGN+Y G+V VLP M+AAFVDIG + Sbjct: 685 MVVRQSGDRTQIGVLEDGVLVEHYVNRAQSASYVGNVYLGKVQNVLPSMEAAFVDIGKGR 744 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 A L+A ++ + G+ ++ I +++ GQ ++ QV KDP+G KGARLT+ I+ Sbjct: 745 NAVLYAGEVNFEAAGITGQAKR------IESVLKSGQAVLTQVTKDPIGHKGARLTSQIS 798 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 LP RYLV++P + G+S+++ E+ER RLK ++ E G I+RTAAEG E EL Sbjct: 799 LPGRYLVYVPEGTMTGISRKL-PENERNRLKTILKAVVPEHAGVIVRTAAEGATEDELRR 857 Query: 185 DAAYLKRVWTKVMERKKRP--QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D L W ++ + K LYGE L RV+RD + + ++ V ++ + Sbjct: 858 DVERLSAQWEEIQRKAKTSAGSAPTLLYGEPDLTVRVVRDIFNEDFSKLVVSGDQAWDTI 917 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 E+ P++ +LE +T Q IF + V+ ++ +AL+RKV L SGG L+ID+TEAM Sbjct: 918 REYVGGVAPDLAPRLERWTSEQDIFAVHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMVV 977 Query: 303 VDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+NTG F G NL++T+ NIEA + I RQLRLR+LGGII+IDFIDM E +R V+ Sbjct: 978 IDVNTGKFTGSGGNLEETVTRNNIEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVM 1037 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L + L +DR K V ++LGL++MTRKR + + C C+GRG + +E V Sbjct: 1038 RRLLECLGRDRTKHQVAEVTSLGLIQMTRKRVGQGLLEAFSETCDKCNGRGVLVHMEPV 1096 >UniRef50_B3DX65 Ribonuclease G and E n=7 Tax=Verrucomicrobia RepID=B3DX65_METI4 Length = 554 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 189/497 (38%), Positives = 281/497 (56%), Gaps = 11/497 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E+ ++ P E RVA +D G+L+E IER +++ I NIYKGRV+ + G++A FVDIG Sbjct: 49 NKEIAISCEPLERRVALLDEGLLEEFAIERGSQKEIAQNIYKGRVNNIDQGLKALFVDIG 108 Query: 62 LDKAAFLHASDIMPHTECVA---------GEEQKQFTVRDISELVRQGQDLMVQVVKDPL 112 + K AFLH D +P + + DI + G +++VQV K P+ Sbjct: 109 IGKNAFLHFWDAIPAALDAGIELFERKGTKSKARLPRAEDIPNIYPPGSEVVVQVTKGPI 168 Query: 113 GTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIR 171 GTKG R+TT+ITL RYLV MP G+S++IE ER RL+K++ E E G IIR Sbjct: 169 GTKGPRVTTNITLAGRYLVLMPYNEQFGISRKIEDPKERARLRKILNELRIPEGMGVIIR 228 Query: 172 TAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRI 231 T EG D A L + W + ++ + LY E L +R +RDF ++++I Sbjct: 229 TVGEGQKSRYFVRDLAILLQKWNAIEQKMRECPAPVLLYMEPDLIERTVRDFLTDDVEKI 288 Query: 232 RVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGY 291 +D + + + ++ K+ +Y P+F+ ++E +I A RKVEL SGGY Sbjct: 289 YIDDENEVKRIKDLVAQISKRSQKKIIYYNEPIPLFEKLNIERQIDTAFMRKVELPSGGY 348 Query: 292 LIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDM 351 +IID+TEA+ +D+NTG ++ D+ I TNIEA I+RQLRLRN+GG+++IDFIDM Sbjct: 349 IIIDETEALVAIDVNTGKAKVGKDQDNMILKTNIEAAAEISRQLRLRNIGGLVVIDFIDM 408 Query: 352 NNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGR 411 + + V L++ + KDR K ++ S+ GLVEMTR+R +ESI H L CP CHGR Sbjct: 409 KSRRDQHLVFEKLKECVRKDRAKINLLPISSFGLVEMTRQRVQESIWHSLYVPCPHCHGR 468 Query: 412 GTVKTVETVCYEIMREIVRVHHAYDS-DRFLVYASPAVAEALKGEESHSLAEVEIFVGKQ 470 G VK+ ET+ EI R I RV + V + V + LK E+ L ++E + + Sbjct: 469 GMVKSPETMSIEIQRAINRVIRLHPEVKELRVILNGFVLDRLKSEDEELLVDLERRMQGK 528 Query: 471 VKVQIEPLYNQEQFDVV 487 + + +P N E+F +V Sbjct: 529 LYFRTDPRINYEEFKIV 545 >UniRef50_A6GBN9 Ribonuclease G n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBN9_9DELT Length = 507 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 233/491 (47%), Positives = 314/491 (63%), Gaps = 9/491 (1%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 +++N ETRVA I+ GIL E+ IERE RGIVGN+YKG++ RVLPGMQAAFVDIG DK Sbjct: 6 IVINADGPETRVALIENGILTELFIERERERGIVGNVYKGKILRVLPGMQAAFVDIGEDK 65 Query: 65 AAFLHASDIMPHTECVA-------GEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGA 117 AAFL+A DI G ++ V +I++LV GQ+++VQVVKDP+ TKGA Sbjct: 66 AAFLYAGDIASQKPGEKVDKVDKNGVPKRGGKVSNIADLVHPGQEILVQVVKDPISTKGA 125 Query: 118 RLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGV 177 R+TT I+LP R +VFMP SHVG+S+RI SE +R RL+++V E + GFI+RT A Sbjct: 126 RITTYISLPGRNVVFMPTVSHVGISRRINSERQRRRLRRLVDEMRPKGSGFIVRTVARHA 185 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 A++ + YL R+W + ++ + LY +L L RV+RD + R+ VD R Sbjct: 186 SSAQVRAGMDYLIRLWANIKANERLHRAPVLLYRDLDLMLRVVRDNLSPDYARVIVDDRA 245 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 YE L F ++PE ++E ++GRQ IFD + +E EI RALERKVELKSGG L+ DQ Sbjct: 246 AYERLKRFADAFLPEYADRIELFSGRQGIFDSYGIELEIDRALERKVELKSGGSLVFDQG 305 Query: 298 EAMTTVDINTGAFVG--HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 EA+T +D+NTG FVG + L+ TI TN+EA IA QLRLRN+GG+IIIDFIDM+ E Sbjct: 306 EALTAIDVNTGKFVGSKGKTLEQTITQTNLEAADEIAEQLRLRNVGGLIIIDFIDMDRES 365 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 +RR+V L+ AL +DR K + S +GLVEM+RKRTRES+E L C C G+G K Sbjct: 366 NRRKVYRRLQDALRRDRAKAHITKISEMGLVEMSRKRTRESLERRLAITCEVCGGKGYHK 425 Query: 416 TVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQI 475 + T+CYEI+R+I R + V A P VAE + G E +L V K + VQ Sbjct: 426 SPSTICYEILRQIRREGEHLAGEVISVTAHPDVAELMNGAERSALDHAVKRVHKAIDVQG 485 Query: 476 EPLYNQEQFDV 486 ++ E+F++ Sbjct: 486 RKGFHPEKFEI 496 >UniRef50_A0LJB4 RNAse E n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJB4_SYNFM Length = 495 Score = 560 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 171/478 (35%), Positives = 265/478 (55%), Gaps = 8/478 (1%) Query: 1 MTAELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ +++N P E RVA ++G L+ IE R +VGNIYKG V+ V P +QAAFV+ Sbjct: 1 MSQTMIINAIHPEEFRVALMEGQTLEGFFIETATRGKVVGNIYKGIVTHVQPSLQAAFVN 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G+++ FL +I P +E+ + I +++ GQ+++VQVVK+ LG+KGA L Sbjct: 61 YGMERNGFLPFPEIHPEYYEEDSDERVR-----IQDVIHSGQEVLVQVVKEELGSKGALL 115 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVG 178 TT I+L R +V MPG S GVS++IE +RERLK++ + E+ G I+RTAAEG Sbjct: 116 TTYISLAGRDVVLMPGQSQRGVSRKIEDGGQRERLKELAGDLKVPEEFGVILRTAAEGRT 175 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + E+ D +L ++W ++ + + +Y E LA RV+RD+ + + I VD R Sbjct: 176 KREVTKDFNHLMKIWEEIRKHVQETPAPALIYKEQDLAVRVIRDYFNPNIKTILVDDREV 235 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + + +F P + Y PI +++E +I + +KV LKSGG+L+ID TE Sbjct: 236 LKQVKDFIRIISPRHDRVVRFYKEDGPITGKYNLEEQIAQIFRKKVPLKSGGHLVIDPTE 295 Query: 299 AMTTVDINTGA-FVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 A+ VD+N+G G L++ +F N+EA I RQLRLR+LGG+I+IDFIDM + H Sbjct: 296 ALVAVDVNSGRTNSGEGALEEMVFKVNMEAAAEIPRQLRLRDLGGLIVIDFIDMRDNRHT 355 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V L++ + KD+ K +V S GL+E++R+ +I ECP C G G V++ Sbjct: 356 REVERRLKEEIKKDKAKITVGRISRFGLLELSRQHLGLNIMRGSYKECPLCQGAGMVRSA 415 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQI 475 ET +R+I +P VA L + L +E G ++++ Sbjct: 416 ETTALCYLRKIWLTLSQKKPASVRATFAPEVAHYLLNRKRQELTRLEERYGTNIQIES 473 >UniRef50_C7MPQ3 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycetales RepID=C7MPQ3_SACVD Length = 1093 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 161/423 (38%), Positives = 243/423 (57%), Gaps = 13/423 (3%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V T++ ++ G+L E + IVGN+Y GRV VLP M+AAF+DIG Sbjct: 495 ERTMVVAERGDSTQIGVLEDGVLVEHFVTSSDSGSIVGNVYLGRVQNVLPSMEAAFIDIG 554 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G+ R I + + G ++VQV KDP+G KGARLTT Sbjct: 555 RGRNAVLYAGEVDWDAAGLEGK------ARKIEQALTTGDHVLVQVTKDPVGHKGARLTT 608 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I+LP R+LV++P G+S+++ E+ER RLK ++ G IIRTA+EG+ E E Sbjct: 609 QISLPGRFLVYVPSGGATGISRKL-PENERRRLKDILKRIVPSDAGVIIRTASEGISEEE 667 Query: 182 LASDAAYLKRVWTKVMERK-----KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSR 236 LA D LK W + E+ K+ LY E L +V+RD + ++ V Sbjct: 668 LARDVRRLKAQWEVIKEKAEAASAKKSGAPALLYQEPDLLVKVIRDLFTEDFKKLVVQGD 727 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 +E + + P++ ++E Y G +F + ++ ++ +AL+RKV L SGGYL+ID+ Sbjct: 728 TAWETIRNYVEHVAPDLLDRVERYVGTGDVFADYRIDEQLMKALDRKVWLPSGGYLVIDR 787 Query: 297 TEAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 TEAMT +D+NTG F G NL++T+ N+E+ + I RQLRLR++GGII+IDFIDM E Sbjct: 788 TEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLES 847 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 +R VL L + LS+DR + V ++LGLV+MTRKR + C C GRG + Sbjct: 848 NRELVLRRLTECLSRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAFSTTCEHCKGRGVIV 907 Query: 416 TVE 418 + + Sbjct: 908 STD 910 >UniRef50_B0SXB4 Ribonuclease, Rne/Rng family n=2 Tax=Alphaproteobacteria RepID=B0SXB4_CAUSK Length = 905 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 158/532 (29%), Positives = 260/532 (48%), Gaps = 47/532 (8%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L++ ETRV +DG ++E E + R+ + GNIY +V+RV P +QAAF++ Sbjct: 1 MSKKMLIDAAHAEETRVVVVDGSRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMPHTEC---------------------------------------- 79 G ++ FL ++I P Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSHDDEDDHDHGRDGDDGDAVDDEEDAV 120 Query: 80 ---VAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG- 135 +A +++ I E++R+ Q ++VQVVK+ G KGA LTT ++L RY V MP Sbjct: 121 EEELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGRYGVLMPNT 180 Query: 136 ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194 A G+S++I + ++R+RLK VV + G I+RTA +AE+ D YL R+W Sbjct: 181 ARGGGISRKITTITDRKRLKSVVQGLDVPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWE 240 Query: 195 KVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMT 254 + + +Y E L +R +RD D +L+ I V+ Y+ +F +P Sbjct: 241 NIRDNTLHSIAPALIYEEEDLVKRAIRDMYDKDLEGIWVEGEAGYKEARDFMRMLMPSQA 300 Query: 255 SKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR 314 K+ Y P+F +E+ + + V L+SGGYL+I+QTEA+ +D+N+G R Sbjct: 301 KKVFPYREAAPLFVKHKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAIDVNSGKATRER 360 Query: 315 NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVK 374 N++ T TN+EA + ARQLRLR+L G+I+IDFIDM+ + R V L+ +L DR + Sbjct: 361 NIEATALKTNMEAAEEAARQLRLRDLAGLIVIDFIDMDEGKNNRAVEKILKDSLKDDRAR 420 Query: 375 TSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHA 434 + S GL+E++R+R R + + C C G G V++VE+ +R + Sbjct: 421 IQMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCDGTGRVRSVESSALAALRAVEVEALK 480 Query: 435 YDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + S V + E+ L ++ V V ++ +Q + D+ Sbjct: 481 G-GGAVTLKVSRPVGIYILNEKRAYLLRLQQTHALFVTVLVDDSLHQAEHDI 531 >UniRef50_UPI0001C430FE cytosolic axial filament protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C430FE Length = 503 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 188/489 (38%), Positives = 288/489 (58%), Gaps = 4/489 (0%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++ N E R A ++ G + E+ +ER A IVGN+Y GRV VLPGMQAAFVDI Sbjct: 1 MNRKIYFNTATRERRAAIVENGQVVELLVERPAENRIVGNVYIGRVVNVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G +K FL+ D++ +E K+ R+I+E V +GQ+L+VQV K+ G KG RL+ Sbjct: 61 GREKNGFLYRDDLLSFHLSEEADEVKK--QRNITEFVTKGQELLVQVTKEGFGQKGPRLS 118 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 +++P +Y V+MP +VGVS+R+ +E ERERL+ + + E G IIRT E Sbjct: 119 GVVSMPGKYTVYMPEGGYVGVSRRMGTEEERERLRGIGEDLLKENEGMIIRTVCEDAKPE 178 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 + D +L+ W V + K + ++ +L ++++ DF+ ++D I +D Y+ Sbjct: 179 VIEQDLHFLRTSWESVWQEGKEKRAPALIHQGSSLIEKMMLDFSLNQIDEIVIDDADDYQ 238 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 L + Y ++ K+ Y ++ IF +F ++ E+ +AL R++ LK+G YLI+DQTEA+ Sbjct: 239 TLKALLAPYS-DVHEKVRLYHDKENIFSVFGIDKELDKALRRQIWLKNGAYLIVDQTEAL 297 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG F G +L DT+ TN+EA + IARQLRLR+ GIIIIDFIDM E+ R V Sbjct: 298 TVIDVNTGKFTGKTDLQDTVRKTNLEAAKEIARQLRLRDTSGIIIIDFIDMKREEDREYV 357 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L + ++ L +DR KT+V G + LGLVEMTRK+ R+S++ L CPTC +G+V + E Sbjct: 358 LEAFKRGLKQDRTKTNVVGLTGLGLVEMTRKKVRQSLQASLSKACPTCKEQGSVLSDEAQ 417 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 Y+I R I + D + L+ AV+ L G + L ++E G ++ + Sbjct: 418 AYKIERLIW-EYRGMDHEAILIELPSAVSAVLAGPKGELLKQLEEATGFRILLMPNKHMP 476 Query: 481 QEQFDVVMM 489 +E F + M Sbjct: 477 EEAFAIRFM 485 >UniRef50_A4XJ17 Ribonuclease G n=7 Tax=Clostridia RepID=A4XJ17_CALS8 Length = 571 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 196/486 (40%), Positives = 308/486 (63%), Gaps = 4/486 (0%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +E++V+V+ ETRVA ++ L EI+IER ++ IVGNIYKG V +LPGM AAFV+I Sbjct: 1 MQSEIIVDVSFGETRVAVLEDKELVEIYIERNDQQSIVGNIYKGVVENILPGMDAAFVNI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK AFL+ DI G+ + + ++ +R GQ+++VQV+K+ KG R+T Sbjct: 61 GQDKNAFLYLGDI---NRLEFGDTDEYYEIKTNPLALRCGQEIVVQVIKEAYDQKGPRVT 117 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T+ITLP RYLV +P ++G+S+RIE E ER RLK++ + + G I+RTAAEG E Sbjct: 118 TNITLPGRYLVLLPNTDYIGISKRIEFEEERTRLKEIACKIKPDGMGLIVRTAAEGKSEE 177 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L ++ +L+ +W K+ ++ K LY + L + +RD ++DR ++ R Y Sbjct: 178 VLRNELEFLRNLWQKIRQKSKES-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYN 236 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 ++EF S Y P + SK+E++ IF+ F +E ++ +AL +++ LKSGGY++ID+TEA+ Sbjct: 237 KIIEFLSTYAPSLKSKVEYFNLATNIFEYFQIEQKLSKALSKRIWLKSGGYIVIDETEAL 296 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG FVG ++ +TI TN+EA IARQ+RLR++GGIIIIDFIDM N +H++ V Sbjct: 297 TVIDVNTGKFVGKNDVSETILKTNLEAAVEIARQIRLRDIGGIIIIDFIDMKNPEHQKLV 356 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L +L++AL +D+ KT V G + LGLVEMTRK+ R+ + ++ + CP C G G + + ETV Sbjct: 357 LDALKEALKRDKTKTVVVGITPLGLVEMTRKKVRQRLSCIMQSCCPYCEGSGKILSPETV 416 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 ++++EI ++F V + V E L+ E + E++ K+V ++ + Sbjct: 417 GLKVLKEIEWYFKNRVEEKFFVEINTKVCEVLRKGEVDRIKELQEKYKKKVYLKASSNIH 476 Query: 481 QEQFDV 486 +F + Sbjct: 477 INKFTI 482 >UniRef50_B8GWM7 Ribonuclease E n=6 Tax=Caulobacteraceae RepID=B8GWM7_CAUCN Length = 898 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 161/542 (29%), Positives = 261/542 (48%), Gaps = 57/542 (10%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L++ ETRV +DG ++E E + R+ + GNIY +V+RV P +QAAF++ Sbjct: 1 MSKKMLIDAAHAEETRVVVVDGTRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMPHTEC---------------------------------------- 79 G ++ FL ++I P Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSGDDEDDTPISRRASGGDDEDDVNGGD 120 Query: 80 -------------VAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLP 126 +A +++ I E++R+ Q ++VQVVK+ G KGA LTT ++L Sbjct: 121 RAVDDDDDDVEEELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLA 180 Query: 127 SRYLVFMPG-ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELAS 184 RY V MP A G+S++I + ++R+RLK VV + G I+RTA +AE+ Sbjct: 181 GRYGVLMPNTARGGGISRKITAVTDRKRLKSVVQSLDVPQGMGLIVRTAGAKRTKAEIKR 240 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 D YL R+W + E +Y E L +R +RD D +LD I V+ Y+ + Sbjct: 241 DYEYLLRLWENIRENTLHSIAPALIYEEEDLVKRAIRDMYDKDLDGIWVEGDAGYKEARD 300 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 F +P K+ +Y P+F +E+ + + V L+SGGYL+I+QTEA+ +D Sbjct: 301 FMRMLMPSQAKKVFNYRDPTPLFVKNKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAID 360 Query: 305 INTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSL 364 +N+G RN++ T TN EA + ARQLRLR+L G+I+IDFIDM+ + R V L Sbjct: 361 VNSGKATRERNIEATALKTNCEAAEEAARQLRLRDLAGLIVIDFIDMDEAKNNRTVEKVL 420 Query: 365 EQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEI 424 + AL DR + + S GL+E++R+R R + + C C G G V++VE+ Sbjct: 421 KDALKDDRARIQMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCEGTGRVRSVESSALAA 480 Query: 425 MREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQF 484 +R + S ++ S +V + E+ L + G V V ++ + Sbjct: 481 LRAVEAEALKG-SGSVILKVSRSVGLYILNEKRDYLQRLLTTHGLFVSVVVDDSLHAGDQ 539 Query: 485 DV 486 ++ Sbjct: 540 EI 541 >UniRef50_D2PUT1 Ribonuclease, Rne/Rng family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUT1_9ACTO Length = 1119 Score = 555 bits (1432), Expect = e-157, Method: Composition-based stats. Identities = 161/418 (38%), Positives = 251/418 (60%), Gaps = 8/418 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +++ T++A + +L E ++ +E + ++GN+Y GRV VLP M+AAF+DIG Sbjct: 529 ERAMVIRARGDLTQIAVSEDNVLVEHYVAQEEQVSLIGNVYLGRVQNVLPSMEAAFIDIG 588 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ +T +K I +++ GQ ++VQV KDP+G KGARLT Sbjct: 589 KGRNAVLYAGEVDWNTLGGGNGPRK------IESVLKSGQAVLVQVTKDPIGHKGARLTN 642 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I+LP RY+V++P + G+S+++ ++ER RLK ++ + ++ G I+RTAAEG E E Sbjct: 643 QISLPGRYVVYVPRGGNGGISRKL-PDTERSRLKGILKDIVPDEAGVIVRTAAEGATEEE 701 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L +D + L+ W + ++ K Q L+GE L RV+RD + ++ + ++ Sbjct: 702 LTADVSRLQAYWEDIDKKSKSGQAPQLLHGEPDLLIRVVRDLFTEDFAKLVISGDDAFDQ 761 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + E+ S P + ++ +TG +F F ++ +I++AL+RKV L SGG LIID+TEAMT Sbjct: 762 VSEYVSAVAPHLAERVAKWTGDGDVFANFRIDEQIKKALDRKVWLPSGGSLIIDRTEAMT 821 Query: 302 TVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 VD+NTG F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R V Sbjct: 822 VVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLV 881 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 L L + L +DR K V ++LGLV+MTRKR + C C GRG + E Sbjct: 882 LRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRIGTGLLEAFGENCDHCGGRGLILHDE 939 >UniRef50_C9KMZ9 Ribonuclease G n=2 Tax=Veillonellaceae RepID=C9KMZ9_9FIRM Length = 480 Score = 555 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 194/487 (39%), Positives = 297/487 (60%), Gaps = 13/487 (2%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++VN+ P ET +A ++ G LQ + +ER + +VGNIYKGRV VLPGMQAAFVDIG Sbjct: 2 KSIIVNMVPEETCMALLEDGELQAVEMERSSHSHLVGNIYKGRVQNVLPGMQAAFVDIGT 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K AFL+ D +PH + + + + GQ L +Q+VKD +GTKG R T Sbjct: 62 GKNAFLYIGDGLPHETIESMPQNAR---------IHIGQSLPIQIVKDAIGTKGPRATMH 112 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I+LP R +V MP A+++G+S+RIE E ER RL + C + G IIRT A G E L Sbjct: 113 ISLPGRNVVLMPTAAYIGMSRRIEDEGERARLHAIAERICPKGMGLIIRTVAAGQSEQSL 172 Query: 183 ASDAAYLKRVWTKVMERKK-RPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 A+D YL R+W ++ R K R + LY + L R++RD A++D + +D+ Y+ Sbjct: 173 AADVRYLVRLWESILARYKMRTKGSALLYRDADLIIRLVRDRFTADIDELVIDNEEAYQR 232 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + PE+ ++ Y + PIF + +E EI++ R+VELKSGG+L+ID+TEA+T Sbjct: 233 VRSLVEANSPELVDRIRFYEAKTPIFKAYHIEEEIEKLGAREVELKSGGFLVIDKTEALT 292 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+NTG +VG NL DT++ TN+EA I +Q+RLR++GGIII+DFIDM E + +L Sbjct: 293 VIDVNTGKYVGKTNLGDTVYQTNLEAAAEILKQIRLRDIGGIIIVDFIDMEKESQKEELL 352 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 + + + DR KT++ ++LGLVE+TRK+TR++I+ ++ +ECP CHGRG +++ ETV Sbjct: 353 TYMREQVKHDRTKTNIVDITSLGLVEITRKKTRQNIDSIVYSECPICHGRGRIESPETVA 412 Query: 422 YEIMREIVRVHHA-YDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 I R+I R+ + + + + VAE L+ + + G +KV ++P + Sbjct: 413 IRISRDIRRMERKSHAREGYEIEVHETVAEELRAN--QLMMNLAAEFGTDIKVTVKPGMH 470 Query: 481 QEQFDVV 487 E + ++ Sbjct: 471 PENYTIL 477 >UniRef50_D2R4N9 Ribonuclease, Rne/Rng family n=2 Tax=Planctomycetaceae RepID=D2R4N9_9PLAN Length = 543 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 189/523 (36%), Positives = 289/523 (55%), Gaps = 37/523 (7%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M +E+L+NV+ P E R+A I+ G+L+E++IER ++ VGNIY+GR+ + P +QAAFVD Sbjct: 7 MKSEMLINVSQPEECRIAIIEDGLLEELYIERASQDNYVGNIYRGRIVNLEPSIQAAFVD 66 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQ---------------------------------- 85 G+ + FLH SD+ P G + Sbjct: 67 FGVGRNGFLHISDVEPQYFRQGGYDPAEQIGGGRLADIDTGEDDDAPRPQQRRERRPPRG 126 Query: 86 -KQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQR 144 + I E+ R+G +++VQV+K+ +GTKG L+T I++P RYLV MP VGVS++ Sbjct: 127 GRPRVKPPIQEIFRRGDEVLVQVIKEGIGTKGPTLSTYISIPGRYLVLMPALGRVGVSRK 186 Query: 145 IESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRP 203 IE + R L+ + E +G GFI+RTA + + EL+ D AYL R+W ++ R K+ Sbjct: 187 IEDDELRRTLRDTLLELNPPKGLGFIVRTAGQDRTKKELSRDMAYLLRLWKVIVRRLKKT 246 Query: 204 QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGR 263 +Y E + R +RD AE+D I +D +E EF +P ++L Y GR Sbjct: 247 AGPATIYEESDMIIRTIRDIFTAEIDAIYIDHPEAFERAKEFLQLVMPRNVNRLHQYEGR 306 Query: 264 QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNT 323 +P+F + VE EI + +RKV L+ GG ++IDQTEA+ +D+N+G F + D+T + Sbjct: 307 EPLFHKYKVEQEIVQIYQRKVPLRGGGSIVIDQTEALVAIDVNSGNFRAEDDADETAYQL 366 Query: 324 NIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSAL 383 NI A + IARQLRLR+LGG+I+ DFIDM E HRR V +L A+ +DR +T + S Sbjct: 367 NISAAKEIARQLRLRDLGGVIVNDFIDMRKERHRRGVERALRDAMRRDRARTKILRTSPF 426 Query: 384 GLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVY 443 GL+EMTR+R R S++ + +CP C GRG VKT E++ E++R ++ + R V Sbjct: 427 GLIEMTRQRIRPSLKRSVYGDCPCCSGRGVVKTAESMAIEVVRMLMLASQQPNVSRVTVR 486 Query: 444 ASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + VA L ++ + ++E V++ E V Sbjct: 487 VNSEVASYLNNKKRREIMKLEDDAQMVVQILSHEGAFPEHLQV 529 >UniRef50_B3T2A0 Putative S1 RNA-binding domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A0_9ZZZZ Length = 776 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 151/489 (30%), Positives = 252/489 (51%), Gaps = 5/489 (1%) Query: 3 AELLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE ++R NIYK ++SR+ P + A FVD G Sbjct: 23 KRMLINATQEEELRVAMVDGQKLYDLDIEIKSREQKKNNIYKAKISRIEPSLDAIFVDFG 82 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL ++ ++ DI +L+ +GQD++VQV K+ GTKGA LTT Sbjct: 83 SARNGFLPFREVSREYYLSEPIPGEKL---DIKKLLEEGQDIVVQVSKEERGTKGAALTT 139 Query: 122 DITLPSRYLVFMPGA-SHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I+L R++V MP GVS++I + + L + ++ G IIRTA G + Sbjct: 140 FISLAGRFIVLMPNKAKAGGVSRKIMGQDREQILDSLSNLGVPKEAGLIIRTAGLGRSDI 199 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 EL D +L +W + + + ++ E L R +RD + E+ I VD T++ Sbjct: 200 ELEWDLKHLLGIWNSIKKMAVNVEAPALIFKEDNLIVRAMRDHLNDEISEIIVDDENTFK 259 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 ++ + P KL +Y P+F F +E++I+ A KV L SGG ++ID TEA+ Sbjct: 260 DAKKYLKQVTPNNLKKLLYYKETTPLFTKFQIEHQIESAYSNKVILPSGGSVVIDYTEAL 319 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 ++DIN+G ++ T TN+EA I RQ RLR+LGG+++IDFIDM ++++V Sbjct: 320 VSIDINSGKSTKQSGIESTALKTNLEAVDEITRQCRLRDLGGLLVIDFIDMRQHRNQKQV 379 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 ++L+ A+ DR K S+ S GL+EM+R+R R S+ C C G G +++ E++ Sbjct: 380 ENALKNAVKSDRAKISLGHISKFGLLEMSRQRLRPSLGDSAYRICENCSGMGRIRSTESL 439 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 ++R + ++ + A L E+ + ++E + + +P + Sbjct: 440 ALAVLRLVEEEARKENTASVIADIPSDAATYLLNEKRQWIKDIEQRESVHIILIADPELS 499 Query: 481 QEQFDVVMM 489 F + + Sbjct: 500 SVNFSIKRL 508 >UniRef50_Q2LU58 Ribonuclease E n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU58_SYNAS Length = 630 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 160/488 (32%), Positives = 263/488 (53%), Gaps = 4/488 (0%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M +L+N E R+A ++ G L E +I+ R I GNIYKG V +V G+QAAFV+ Sbjct: 1 MKHIMLINAVHHEQKRMAIVEDGKLVEFNIQMSLREPITGNIYKGIVLKVERGLQAAFVN 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G+ K FL D+ P E ++ S ++ GQ+++VQV ++ G KGA L Sbjct: 61 FGVGKDGFLPLRDVSPAYFTEKKEAGRESAHSRGS--LKIGQEVIVQVAREVSGRKGALL 118 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVG 178 TT ++LP RYLV +P G+S++IE+E +R LK +V + DE GFI+RTA Sbjct: 119 TTYLSLPGRYLVLLPNKHSSGISRKIEAEEDRRLLKTLVEQIKIDEGMGFIVRTAGINRT 178 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + EL+ D +L R+W ++ +R + +Y E R LRD+ +E++ I VD T Sbjct: 179 KQELSRDYQHLLRLWKEIQKRAETDPAPALIYQESDFGVRSLRDYFTSEIEEILVDDLET 238 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 Y + + P ++ Y R PIF +++E +I+ + +VELKSGG ++I TE Sbjct: 239 YRKMRAYCKAVAPRNLRMIKQYKERLPIFSQYNLEEQIREIYQERVELKSGGSIVISPTE 298 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 AM T+D+N+G +N++DT F TN+EA + I RQLRLR+LGG+I+IDFIDM + H Sbjct: 299 AMITIDVNSGRASNKKNVEDTAFKTNLEAAEEIGRQLRLRDLGGLIVIDFIDMTDRKHEA 358 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V + ++AL+ DR + ++ S G++E++R++ +I+ + CP C G G ++E Sbjct: 359 EVEKTFKKALTLDRARIQMSRISKFGILELSRQKKHSTIQEISYTTCPFCSGSGIRPSLE 418 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPL 478 R+I ++ + +A+ L ++ + +E + + + Sbjct: 419 YTALSAFRKIETEAAKEKANALKISVPYEIADYLLNQKRTDIQRIETLYDLSIHISGKAD 478 Query: 479 YNQEQFDV 486 + + Sbjct: 479 MTWDHAAI 486 >UniRef50_A4F9K3 Ribonuclease, Rne/Rng family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F9K3_SACEN Length = 1075 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 160/424 (37%), Positives = 243/424 (57%), Gaps = 10/424 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V +T++A ++ +L E + +VGN+Y GRV VLP M+AAFVDIG Sbjct: 402 DRRMVVRENGDQTQIAVLEDNVLVENFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFVDIG 461 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ +AG+ R I + + G ++VQV KDP+G KGARLTT Sbjct: 462 RGRNAVLYAGEVDWDAAGLAGK------ARRIEQALSTGDSVLVQVTKDPVGHKGARLTT 515 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I+LP R+LV++PG G+S+++ ER+RLK+++ E G IIRTA+EG E Sbjct: 516 QISLPGRFLVYVPGGGATGISRKLPDN-ERKRLKEILKRIVPENAGVIIRTASEGTSEEA 574 Query: 182 LASDAAYLKRVWTKVMERKKRPQT--RYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D L+ W + E+ P+ LY E L +V+RD + + V + Sbjct: 575 LDRDVRRLQAQWEVIKEKADSPKAQAPQLLYEEPDLLIKVVRDLFTEDFSAMAVQGNQAW 634 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + + P++ +L + G+ +F + +I +AL+RKV L SGGYL+ID+TEA Sbjct: 635 DTIEAYVKHVAPDLAGRLSKHVGKNDVFTEQRISEQIAKALDRKVWLPSGGYLVIDRTEA 694 Query: 300 MTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 MT +D+NTG F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R Sbjct: 695 MTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRD 754 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL L + L +DR + V ++LGLV+MTRKR + + C C GRG + + + Sbjct: 755 LVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAYSSTCEHCRGRGLLVSTD 814 Query: 419 TVCY 422 V + Sbjct: 815 PVTH 818 >UniRef50_B2GGD5 Putative ribonuclease n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GGD5_KOCRD Length = 1145 Score = 550 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 161/422 (38%), Positives = 247/422 (58%), Gaps = 10/422 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +LV ++ ++ GIL E + + ++GN+Y G+V VLP M+AAFVDIG Sbjct: 331 ERTMLVRQKEDRIQIGVLEDGILAEHFVSHTTQDSLIGNVYVGKVQNVLPSMEAAFVDIG 390 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + + +K I ++ G ++VQV KDP+G KGARLT+ Sbjct: 391 RGRNAVLYAGEVDWDAAEMGHKPRK------IENALKSGDTVLVQVTKDPVGHKGARLTS 444 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ++LP RYLV++PG S G+S+++ + ER+RLKK++ + E G I+RTAAEG E E Sbjct: 445 QVSLPGRYLVYVPGGSMTGISRKL-PDVERQRLKKILKDRLPEGAGVIVRTAAEGASETE 503 Query: 182 LASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L +D L+ W ++ E+ + LY E L + +RD + + + V + Sbjct: 504 LTNDINRLRSQWEQIQEKAGSTKTLAPELLYAEPDLTIKTVRDVFNEDFTAMVVQGEQAW 563 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + + + P++ +L+ +T + +F+ VE +IQ+ALERKV L SGG L+ID+TEA Sbjct: 564 DNIEAYVTYVAPDLLDRLQRWTEDEDLFEHMRVEEQIQKALERKVFLPSGGSLVIDRTEA 623 Query: 300 MTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 MT VD+NTG F G NL++T+ N+EA + I RQLRLR++GGII++DFIDM E +R Sbjct: 624 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRD 683 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL L + L +DR K V ++LGLV+MTRKR + V C C GRG + Sbjct: 684 LVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFSEPCEECAGRGVLVHDH 743 Query: 419 TV 420 + Sbjct: 744 PL 745 >UniRef50_B5JNK0 Ribonuclease, Rne/Rng family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNK0_9BACT Length = 582 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 177/506 (34%), Positives = 291/506 (57%), Gaps = 21/506 (4%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRG-IVGNIYKGRVSRVLPGMQAAFVDIG 61 EL++N P E RV + GIL + IER IVG I+KGR+ + PG++AAFVDIG Sbjct: 68 RELIINSEPLEIRVGQLVDGILDKFDIERRHSAQRIVGGIFKGRIKNLDPGLKAAFVDIG 127 Query: 62 LDKAAFLHASDIMPH-----------TECVAGEEQKQFTVRDISELVRQGQDLMVQVVKD 110 + K AFLH DI P G++Q + +++I G ++++Q+ K Sbjct: 128 MPKNAFLHYWDIQPQEADSSIEVVRVNSSRKGKKQAKIPLKEIPNHYPIGTEIVIQITKG 187 Query: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFI 169 P+GTKG R TT++++P R++V +P + G+S++IE ER+RLKK++ + E G I Sbjct: 188 PIGTKGPRSTTNLSIPGRFIVLVPHSDQCGISRKIEDNKERQRLKKIIRDLTIPEGMGII 247 Query: 170 IRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELD 229 +RTA EG D L + W K+ ++ + LY E LA+R +RDF ++D Sbjct: 248 VRTAGEGKKARYFVRDLHILLQTWEKIQKKMDSARAPACLYKEPDLAERTVRDFLTEDID 307 Query: 230 RIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSG 289 R+ +D+ + + E ++ TSK++ Y PIF+ +++E +I++ +R+V L SG Sbjct: 308 RVLIDNEEDHGRISETVAQISKRSTSKIQLYQDSIPIFERYNIEKQIEQTFQRQVPLPSG 367 Query: 290 GYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFI 349 G ++I++TEA+ +D+NTG+ N +DTIF N EA + +ARQ+RLRN+GG+IIIDFI Sbjct: 368 GAIVIEETEALIAIDVNTGSHKNRGNENDTIFQVNCEAAEEVARQIRLRNIGGLIIIDFI 427 Query: 350 DMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCH 409 DM HR +L + A+S D+ KT + S LG+++MTR+R +ES+ L +CP C Sbjct: 428 DMKQRRHRNAILSRMRDAMSSDKAKTHILPISPLGIMQMTRQRMQESVSSGLYTDCPYCR 487 Query: 410 GRGTVKTVETVCYEIMREIVRVHHAYDSD--------RFLVYASPAVAEALKGEESHSLA 461 G+G VK+ TV E+ R++ + + + + +PA+ + L+ E++ L Sbjct: 488 GKGIVKSGTTVSVELQRKLSGIIRRARNRTPDLAKPIKLRILVNPAIIDRLREEDADLLI 547 Query: 462 EVEIFVGKQVKVQIEPLYNQEQFDVV 487 +E Q+ + +P ++ E + V+ Sbjct: 548 SLEKDYNAQLTFRADPNFHVENYRVI 573 >UniRef50_D1BDM1 Ribonuclease, Rne/Rng family n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BDM1_SANKS Length = 1265 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 156/418 (37%), Positives = 250/418 (59%), Gaps = 8/418 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V T++A ++ G+L E ++ ++++ + GN+Y GRV VLP M+AAF+D+G Sbjct: 686 ERSMIVRERNGRTQIAVLEDGVLVEHYVSQQSQASMAGNVYLGRVQNVLPSMEAAFIDVG 745 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G+ R I + ++ G ++VQV KDP+G KGARLT+ Sbjct: 746 KGRNAVLYAGEVNWDAAGMEGQP------RRIEQALKSGDSVLVQVTKDPIGQKGARLTS 799 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 +TL RYLV++PG G+S+++ ++ER RLKK++ E E G I+RTAAEG E E Sbjct: 800 QVTLAGRYLVYVPGGGMTGISRKL-PDTERARLKKILREVVPETAGVIVRTAAEGASEEE 858 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L +D A L+ W + ++ K L GE LA RV+RD + + + V + Sbjct: 859 LRADIARLQGQWEAIEKKSKTASAPALLQGEPDLAIRVVRDIFNDDFTSLTVSGDGAWSE 918 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + E+ + P++ +++ +T + +F ++ ++ + ++RKV L SGG L+ID+TEAMT Sbjct: 919 ISEYVNALAPDLAERVKRWTSDKDVFAEARIDEQLAKGMDRKVWLPSGGSLVIDRTEAMT 978 Query: 302 TVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 VD+NTG F G L++T+ N+EA + I RQLRLR++GGII++DFIDM E +R V Sbjct: 979 VVDVNTGKFTGSGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLV 1038 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 L + + L +DR K V ++LGLV+MTRKR + + C C+GRG + E Sbjct: 1039 LRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCDHCNGRGFIVHDE 1096 >UniRef50_D1BV45 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycetales RepID=D1BV45_XYLCX Length = 1043 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 160/422 (37%), Positives = 248/422 (58%), Gaps = 9/422 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 + ++V T++A ++ G+L E ++ ++++ +VGN+Y GRV VLP M+AAFVD+G Sbjct: 552 SRSMIVRERDGRTQIAVLEDGVLVEHYVSQQSQSSMVGNVYLGRVQNVLPSMEAAFVDVG 611 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G + R I + ++ G ++VQV KDP+G KGARLT+ Sbjct: 612 KGRNAVLYAGEVNWDAAGLDGGQP-----RRIEQALKSGDSVLVQVTKDPIGHKGARLTS 666 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 +TL RYLV +PG G+S+++ + ER RLKKV+ + E G I+RTAAEG E E Sbjct: 667 QVTLAGRYLVLVPGGGMTGISRKL-PDVERNRLKKVLRDIVPEGAGVIVRTAAEGASEEE 725 Query: 182 LASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L +D L+ WT + + R L GE LA RV+RD + + + V + Sbjct: 726 LRADVERLQNQWTGITTKAGRASTSAPALLQGEPDLAIRVVRDIFNDDFSSLIVQGDGAW 785 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + + E P++ ++ +T +F + V+ ++ + ++RKV L SGG L+ID+TEA Sbjct: 786 QEVAGYVEELAPDLRERVTSWTENTDVFSVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEA 845 Query: 300 MTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 MT +D+NTG F G L++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R Sbjct: 846 MTVIDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRD 905 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL L + L +DR K V ++LGLV+MTRKR + + C C GRG + E Sbjct: 906 LVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCKGRGFIVHAE 965 Query: 419 TV 420 + Sbjct: 966 PI 967 >UniRef50_A0JXK2 Ribonuclease, Rne/Rng family n=4 Tax=Actinomycetales RepID=A0JXK2_ARTS2 Length = 1113 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 163/440 (37%), Positives = 255/440 (57%), Gaps = 10/440 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +++V ++ ++ G+L E + + + ++GN+Y G+V VLP M+AAFVDIG Sbjct: 382 DRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 441 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G++ R I ++ G ++VQV KDP+G KGARLT+ Sbjct: 442 RGRNAVLYAGEVNWDAVNLEGKQ------RRIENALKSGDSVLVQVTKDPVGHKGARLTS 495 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I+LP RYLV++PG S G+S+++ + ER RLK+++ + E G I+RTAAEG E E Sbjct: 496 QISLPGRYLVYVPGGSMTGISRKL-PDVERNRLKRILKDRLPEDAGVIVRTAAEGASEEE 554 Query: 182 LASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D L+ W + + + LYGE L +V+RD + + ++ V + Sbjct: 555 LTHDINRLRAQWEGIESQATSTKILAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAW 614 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + + + P++ +LE +T IF + ++ +I +AL+RKV L SGG L+ID+TEA Sbjct: 615 DTIEAYVTYVAPDLVGRLEKWTKDTDIFAAWRIDEQIHKALDRKVFLPSGGSLVIDRTEA 674 Query: 300 MTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 MT VD+NTG F G NL++T+ N+EA + + RQLRLR++GGII+IDFIDM E +R Sbjct: 675 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRD 734 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL + + L +DR K V ++LGLV+MTRKR + V +C C GRG V E Sbjct: 735 LVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGIVTHDE 794 Query: 419 TVCYEIMREIVRVHHAYDSD 438 V + + HH ++ Sbjct: 795 PVEHRRANTVAAEHHVQRTE 814 >UniRef50_B0VJP4 Ribonuclease G n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJP4_9BACT Length = 505 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 178/493 (36%), Positives = 284/493 (57%), Gaps = 10/493 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E++VNV P E RVA ++ L E+ +ER ++ IVGNIYKG V VLPGM AAF++IG Sbjct: 7 NTEIIVNVHPLEKRVAVLEDSRLVELFVERREQQNIVGNIYKGIVKDVLPGMGAAFIEIG 66 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRD-----ISELVRQGQDLMVQVVKDPLGTKG 116 L++ AFLH SDI+ + + V I +L++ GQ+++VQV K P+G+KG Sbjct: 67 LERTAFLHYSDIVMDFLDIYENALPRTKVNPEDSSQIDKLLKPGQEIVVQVHKGPIGSKG 126 Query: 117 ARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEG 176 ARLT I++P +YLV P + VS++I S++ER R++ +++ D G I+RT AEG Sbjct: 127 ARLTGQISIPGKYLVLFPNKDKIAVSRKIYSQAERSRIRNLLSGIKDPGYGLIVRTEAEG 186 Query: 177 VGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSR 236 E + ++ L + W + ++ K + ++ E AL ++RD +DR+ +D + Sbjct: 187 CEEDDFQTEYKALIKTWHLIEKQIKYAKAPVCVFEENALENYLIRDLFGENVDRLVIDDK 246 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 + ++ ++ PE+ + +E Y PIFD + +E +I+ L ++ L SGG + I+Q Sbjct: 247 NFAKRIISQLTDISPELINNIEIYREDSPIFDAWGIEKKIETVLHSRIYLPSGGNIKIEQ 306 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+ +D+NTG+F G N D+T+ TN+EA IARQ+RLR+L G+IIIDFIDM E + Sbjct: 307 TEALVAIDVNTGSFTGKTNYDETVRKTNLEAAAEIARQIRLRDLSGVIIIDFIDMVEEKY 366 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 + VL L++ L +DR K V F+ LGLVE+TRKR R ++ + CP C+G G + + Sbjct: 367 KNEVLEMLKKGLRRDRAKNKVYSFTELGLVEVTRKRMRNTLISNFSDPCPFCNGSGRILS 426 Query: 417 VETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIE 476 ++V I R + R + + +P + +K A E Q++ + Sbjct: 427 KDSVIMRIYRWLNRSDYFIKDKNLRIVVNPDLLNHIKQHNEDFTAYKE-----QIEFTSD 481 Query: 477 PLYNQEQFDVVMM 489 P +QF V ++ Sbjct: 482 PSIRIDQFKVYLL 494 >UniRef50_D1SD19 Ribonuclease, Rne/Rng family n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SD19_9ACTO Length = 1092 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 158/417 (37%), Positives = 243/417 (58%), Gaps = 8/417 (1%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 ++V T++A ++ G+L E ++ R + + GN+Y G+V VLP M+AAFVDIG + Sbjct: 539 MVVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDIGRGR 598 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 A L+A ++ + G R I + +R G ++VQV KDP+G KGARLT+ I Sbjct: 599 NAVLYAGEVNWDATGLEGR------ARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHIA 652 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 L R+LV++P + G+S+++ ++ER+RL+ V+ + + G I+RTAAEG E ELA Sbjct: 653 LSGRHLVYVPNGNASGISRKL-PDTERKRLRDVLKKLVPDGAGVIVRTAAEGASEDELAR 711 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 D L+ W + + LY E L RV+RD + + + ++ Y+ + Sbjct: 712 DVKRLQAQWEDIQAKATEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDLVES 771 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 + S P++ ++L + G +F + ++ +I + L+RKV L SGG L+ID+TEAMT VD Sbjct: 772 YLSHVSPDLVARLRRHAGVADVFAEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMTVVD 831 Query: 305 INTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG + G NL++T+ N+EA + I RQLRLR+LGGI++IDFIDM E +R VL Sbjct: 832 VNTGKYTGSGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRR 891 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L + L +DR K V ++LGLV+MTRKR + C C GRG + E V Sbjct: 892 LTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGVIIHTEPV 948 >UniRef50_C4RPB5 Ribonuclease Rne/Rng n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RPB5_9ACTO Length = 1086 Score = 547 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 158/417 (37%), Positives = 243/417 (58%), Gaps = 8/417 (1%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 + V T++A ++ G+L E ++ R + + GN+Y G+V VLP M+AAFVDIG + Sbjct: 539 MAVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDIGRGR 598 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 A L+A ++ T + G R I + +R G ++VQV KDP+G KGARLT+ I Sbjct: 599 NAVLYAGEVNWDTTGLEGR------ARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHIA 652 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 L R+LV++P + G+S+++ ++ER+RL+ V+ + + G I+RTAAEG E ELA Sbjct: 653 LSGRHLVYVPNGNASGISRKL-PDTERKRLRDVLKKLVPDGAGVIVRTAAEGASEDELAR 711 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 D L+ W + + LY E L RV+RD + + + ++ +Y + Sbjct: 712 DVKRLQAQWEDIQAKVASGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGDESYGMVES 771 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 + S P++ ++ + G +F + ++ +I + L+RKV L SGG+L+ID+TEAMT VD Sbjct: 772 YLSHVSPDLVDRVRRHVGTSDVFATYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVD 831 Query: 305 INTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG + G NL++T+ N+EA + I RQLRLR++GGI++IDFIDM E +R VL Sbjct: 832 VNTGKYTGAGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRR 891 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L + L +DR K V ++LGLV+MTRKR + C C GRG V E V Sbjct: 892 LTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGVVIHTEPV 948 >UniRef50_Q8K9J9 Ribonuclease E n=5 Tax=Buchnera aphidicola RepID=RNE_BUCAP Length = 968 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 157/492 (31%), Positives = 262/492 (53%), Gaps = 9/492 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG+++R+ P ++A F+D G Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESSRSEQKKSNIYKGKITRIEPSLEAVFIDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++K FL +I + E +I +++R+GQ+L+VQ+ K+ GTKGA LTT Sbjct: 62 MEKHGFLPLKEISKNYF---PENYNCDVRLNIKDILREGQELIVQINKEERGTKGAALTT 118 Query: 122 DITLPSRYLVFMPGASHV-GVSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVGE 179 ITL YLV MP + G+S+R+E S+R LK++++ E+ G IIRTA G Sbjct: 119 FITLAGSYLVLMPNNPKIAGISRRVEG-SDRIELKELLSSLKIPEKMGLIIRTAGVGKSI 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D + + W + + K+ + +Y E + R RD+ ++ I +D+ Sbjct: 178 KSLQWDLSLRLKHWNAIKKASKKKSAPFLIYQESNVIVRAFRDYLRQDIGEILIDNPKIL 237 Query: 240 EALLEFTSEYI-PEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + E + P+ +K++ YTG P+F + +E++I A +RKV L SGG +++D TE Sbjct: 238 DIAREHITALGRPDFINKIKLYTGEIPLFSYYQIESQIDSAFQRKVRLPSGGSIMVDTTE 297 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +DIN+ +++ T FNTN+EA + I+RQLRLR+LGG+I+IDFIDM H++ Sbjct: 298 ALTAIDINSSRSTRGADIETTAFNTNLEAVEEISRQLRLRDLGGLIVIDFIDMTTISHQK 357 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 + + L + + +DR + + S GL+EM+R+R S+ + CP C G GT++ E Sbjct: 358 IIENKLREIVREDRARIQIGHISKFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNE 417 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIF-VGKQVKVQIEP 477 ++ I+R I ++ +A L E+ ++ +E G + + Sbjct: 418 SLSLSILRLIEEEALKENTYEVHAIVPIEIACYLLNEKREAVYAIEKRQAGGKTIIVPNK 477 Query: 478 LYNQEQFDVVMM 489 + V + Sbjct: 478 NMKTPHYLVSRI 489 >UniRef50_B8HA23 Ribonuclease, Rne/Rng family n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HA23_ARTCA Length = 1151 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 166/440 (37%), Positives = 257/440 (58%), Gaps = 10/440 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +++V ++ ++ G+L E + + + ++GN+Y G+V VLP M+AAFVDIG Sbjct: 432 DRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 491 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G++ R I ++ G ++VQV KDP+G KGARLT+ Sbjct: 492 RGRNAVLYAGEVNWEAVNLEGKQ------RRIENALKSGDTVLVQVTKDPVGHKGARLTS 545 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I+LP RYLV++PG S G+S+++ + ER RLK+++ + EQ G I+RTAAEG E E Sbjct: 546 QISLPGRYLVYVPGGSMTGISRKL-PDVERNRLKRILKDRLPEQAGVIVRTAAEGASEEE 604 Query: 182 LASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D L+ W + + + LYGE L +V+RD + + ++ V + Sbjct: 605 LTHDINRLRAQWEGIESQSSSTKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAW 664 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + + + P++ +LE +T Q IF + ++ +I +ALERKV L SGG L+ID+TEA Sbjct: 665 DTIEAYVTYVAPDLVGRLEKWTKDQDIFAAWRIDEQIHKALERKVFLPSGGSLVIDRTEA 724 Query: 300 MTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 MT VD+NTG F G NL++T+ N+EA + + RQLRLR++GGII+IDFIDM E +R Sbjct: 725 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRD 784 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL + + L +DR K V ++LGLV+MTRKR + V +C C GRG V + Sbjct: 785 LVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGVVTHDD 844 Query: 419 TVCYEIMREIVRVHHAYDSD 438 V + + H + SD Sbjct: 845 PVEHRRANIVAAEQHVHRSD 864 >UniRef50_A4AGL0 Ribonuclease G n=3 Tax=Actinobacteria (class) RepID=A4AGL0_9ACTN Length = 944 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 156/417 (37%), Positives = 244/417 (58%), Gaps = 3/417 (0%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 ++V ++A ++ G+L E ++ + ++GN+Y GRV VLP M+AAFVDIG + Sbjct: 289 MVVRSKFDRIQIAVLEDGVLVEHYVAKAQDASLIGNVYLGRVQNVLPSMEAAFVDIGRGR 348 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 A L++ ++ + K R I ++ G ++VQV KDP+G KGARLT+ ++ Sbjct: 349 NAVLYSGEVDWDAAAENSADGK-PQARRIELALKPGDRVLVQVTKDPVGHKGARLTSQVS 407 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 LP RYLV++P S G+S+++ ++ER RLKK++ E G I+RTAAEG E +L Sbjct: 408 LPGRYLVYVPNGSMSGISRKL-PDTERSRLKKILKGVLPENVGVIVRTAAEGATEEQLTL 466 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 D + L W + + + Q L+ E L +++RD + + ++ ++ + + Sbjct: 467 DVSRLTNQWADISAQVDKVQAPALLHSEPDLLIKIIRDVFNEDFHKLVIEGDDARKTIEN 526 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 + P++ +L+ + F+ F V +I++AL+RKV L SGG L+ID+TEAMT VD Sbjct: 527 YVRSVAPDLLDRLQPHESTVDSFEEFRVSEQIEKALDRKVWLPSGGSLVIDRTEAMTVVD 586 Query: 305 INTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG FVG NL++T+ N+EA + I RQLRLR++GGII++DFIDM E +R VL Sbjct: 587 VNTGKFVGSGGNLEETVTKNNVEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRR 646 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L + LS+DR K V ++LGLV+MTRK+ + C C GRG V + V Sbjct: 647 LVECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSENCEVCAGRGVVVHHDPV 703 >UniRef50_A8M0Z2 Ribonuclease, Rne/Rng family n=2 Tax=Salinispora RepID=A8M0Z2_SALAI Length = 1058 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 161/462 (34%), Positives = 249/462 (53%), Gaps = 15/462 (3%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 + V T++A ++ G+L E ++ R + + GN+Y G+V VLP M+AAFVDIG + Sbjct: 512 MAVRQRGDRTQIAVLEDGVLVEHYVTRNSSTTMAGNVYLGKVQNVLPSMEAAFVDIGRGR 571 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 A L+A ++ + G R I + ++ G ++VQV KDP+G KGARLT+ + Sbjct: 572 NAVLYAGEVNWDATGLEGR------ARSIEQALKSGDSVLVQVTKDPIGHKGARLTSHVA 625 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 L R+LV++PG + G+S+++ ER RL+ + + E G I+RTAAEG E ELA Sbjct: 626 LSGRHLVYVPGGNTSGISRKLPDN-ERRRLRDALKKLVPEGAGVIVRTAAEGASEDELAR 684 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 D L+ W + + + LY E L RV+RD + + + ++ Y+ + Sbjct: 685 DVKRLQAQWEDIQAKAGKGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEGAYDMVES 744 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 + S P++ ++L + G +F + ++ +I + L+RKV L SGG+L+ID+TEAMT VD Sbjct: 745 YLSHVSPDLVARLRRHVGTVDVFTEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVD 804 Query: 305 INTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG + G NL++T+ N+EA + I RQLRLR++GGI++IDFIDM E +R VL Sbjct: 805 VNTGKYTGAGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRR 864 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYE 423 L + L +DR K V ++LGLV+MTRKR + C C GRG + E V Sbjct: 865 LTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGLIVHTEPVP-- 922 Query: 424 IMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEI 465 + +R AS A + E Sbjct: 923 -----EKPRTGGTGERVKAVASAETGTAPRRRTRKGSVTAER 959 >UniRef50_A3EQR7 Ribonucleases G and E n=3 Tax=Leptospirillum RepID=A3EQR7_9BACT Length = 527 Score = 543 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 207/524 (39%), Positives = 321/524 (61%), Gaps = 40/524 (7%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E+L++V+ ET+VA ++ L E ER+ G+VGNIYKGRV++VLPGMQAAFVD+GL+ Sbjct: 2 EILIHVSHEETKVALVENRQLAEFFFERKREAGVVGNIYKGRVNKVLPGMQAAFVDVGLE 61 Query: 64 KAAFLHASDIM--------------------PHTECVAG-----------------EEQK 86 KAAFL+ DI P E + E + Sbjct: 62 KAAFLYVDDIYVEGSDILPGEMPQDDQTAPPPPVEGESPAEGSLTEDPAAGPVSRPEPPR 121 Query: 87 QFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIE 146 + + I E++ +GQ++++Q+ K+P+ TKG R TT I+LP RYLV+MP +HVGVS+RI Sbjct: 122 KVPRKPIEEILTEGQEILIQMTKEPISTKGPRATTYISLPGRYLVYMPQVNHVGVSRRIT 181 Query: 147 SESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTR 206 +E ER+RLK++V +GG+IIRT AEG+ E+E SD +L+ +W + R + + Sbjct: 182 NEEERQRLKEMVNALKGGKGGYIIRTVAEGMSESEARSDIIFLELLWQDIRSRAETMKAP 241 Query: 207 YQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPI 266 + +L + R +RD+ E++ + +D Y+ +++F Y+P+ S++ + G P+ Sbjct: 242 SLVREDLDVVFRTIRDYLTHEVETLYIDDVKEYKRVMDFIGTYMPDYASRVRLWEGPTPL 301 Query: 267 FDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIE 326 F +D+E ++ +ALE+KV LKSGGYL+ID+ EA+T +D+NTG FVG + + TI TN+E Sbjct: 302 FASYDIERQLSKALEKKVWLKSGGYLVIDRAEALTVIDVNTGRFVGENDPESTILQTNLE 361 Query: 327 ATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLV 386 A IARQLRLRN+GGIIIIDFIDM E +R +V L+++L+ D+ +T+ S LGLV Sbjct: 362 AVTEIARQLRLRNIGGIIIIDFIDMEKEKNREKVFQGLQESLAHDKARTNALKISDLGLV 421 Query: 387 EMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDS---DRFLVY 443 EM+RKR RE + H+L C C G+G K++ T+ YEI+ E+ V + + +++ Sbjct: 422 EMSRKRVREDLVHLLGETCAYCDGKGYTKSLRTIAYEILEELRSVPSGGQNPKEKKAILF 481 Query: 444 ASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 P + L+ EE L VE + +Q+ ++ +PL + E+F +V Sbjct: 482 VHPEIQTILQEEERDFLQAVERKIRRQIIIKPDPLSHIEEFSIV 525 >UniRef50_D0LAJ7 Ribonuclease, Rne/Rng family n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAJ7_GORB4 Length = 1123 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 166/445 (37%), Positives = 251/445 (56%), Gaps = 20/445 (4%) Query: 8 NVTPSE--TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKA 65 + TP E T+VA ++ G+L E + +VGNIY GRV VLPGM+AAFVDIG + Sbjct: 504 HATPIEDYTQVAVLEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRN 563 Query: 66 AFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITL 125 L+A ++ + G R I + ++ G +++VQV KDP+G KGARLTT I+L Sbjct: 564 GVLYAGEVNWDAAGLDG------GSRKIEQALKPGDNVLVQVSKDPVGHKGARLTTQISL 617 Query: 126 PSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASD 185 RYLV++PG S G+S+++ + ER+RLK+++A+ G IIRTA+EGV EL +D Sbjct: 618 AGRYLVYVPGGSSTGISRKL-PDVERKRLKQILAKLVPADAGVIIRTASEGVSAEELGAD 676 Query: 186 AAYLKRVWTKVMERKKRPQT------RYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 A L+ W + E + + LY E L RV+RD + + ++ V+ + Sbjct: 677 IARLEAKWRSIDESVTQAKKNSGSAGPKALYEEPDLLVRVVRDLFNEDFKKLVVEGAKAW 736 Query: 240 EALLEFTSEYIPEMTSKL----EHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIID 295 + + P++ ++ + + F + ++ ++ +AL+RKV L SGG LII+ Sbjct: 737 NLVEGYVGSVAPDLMDRVEKFEKPHADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIE 796 Query: 296 QTEAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 TEAMT VD+NTG F G NL++T+ N+EA + I RQ+RLR++GG+II+DFIDM E Sbjct: 797 HTEAMTVVDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLE 856 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 +R VL L +AL++DR + V+ ++LGLV+MTRKR + C TC GRG + Sbjct: 857 SNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTTCGGRGVI 916 Query: 415 KTVETVCYEIMREIVRVHHAYDSDR 439 V + S R Sbjct: 917 VHANPVEVRSEEAGRVEGGSKRSRR 941 >UniRef50_C7NH23 RNAse G n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NH23_KYTSD Length = 959 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 170/420 (40%), Positives = 254/420 (60%), Gaps = 7/420 (1%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++V + T+V ++ G+L E +I+R+ + +VGN+Y GRV VLP M+AAFVDIG Sbjct: 316 RTMVVRESAEYTQVGVLEDGVLVEHYIDRQQQTTMVGNVYLGRVQNVLPSMEAAFVDIGK 375 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + L+A ++ + EQK+ I ++ GQ ++VQV KDP+G KGARLT Sbjct: 376 GRNGVLYAGEVNWDAAGLPKGEQKR-----IESALQPGQPVLVQVTKDPIGHKGARLTGQ 430 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I+LP RYLV++PG + G+S+++ ++ER RLKK++ + G I+RTAAEG EAEL Sbjct: 431 ISLPGRYLVYVPGNTTTGISRKL-PDTERARLKKILKDVVPADAGVIVRTAAEGAAEAEL 489 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 +D L W ++ + + ++GE L RV+RD + + ++ V +E++ Sbjct: 490 RADVERLTTQWERIAAAQAKGSAPTLVHGEPDLTVRVIRDVFNEDFTKLVVSGPTAWESV 549 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + P++T KLE + G Q +F+ +E +I +A++RKV L SGG LI D+TEAMT Sbjct: 550 TSYIDAVAPDLTPKLERWEGEQDVFEHHRIEEQIAKAMDRKVWLPSGGSLIFDRTEAMTV 609 Query: 303 VDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 VD+NTG FVG NL++T+ NIEA + I RQLRLR++GGII++DFIDM E +R V+ Sbjct: 610 VDVNTGKFVGSGGNLEETVTKNNIEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVV 669 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 L + L++DR K V ++LGLV+MTRKR + V C C G G V V Sbjct: 670 RRLVECLARDRTKHQVAEVTSLGLVQMTRKRVGSGLVEVYGETCEHCDGHGLVVQDAPVA 729 >UniRef50_C7QYR2 Ribonuclease, Rne/Rng family n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QYR2_JONDD Length = 1018 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 162/423 (38%), Positives = 246/423 (58%), Gaps = 8/423 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V T++A ++ GIL E ++ ++ + I GN+Y GRV VLP M+AAFVDIG Sbjct: 447 DRSMVVREVAGRTQIAVLEDGILVEHYVSQQEQASIAGNVYLGRVQNVLPSMEAAFVDIG 506 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G+ R I E ++ G ++VQV KDP+G KGARLT+ Sbjct: 507 KGRNAVLYAGEVNWDVHGIEGQP------RRIEEALKSGDSVLVQVTKDPIGHKGARLTS 560 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ITL RYLV++PG G+S+++ ++ER RLK+++ E DE G I+RTAAEG E E Sbjct: 561 QITLAGRYLVYVPGGGMTGISRKL-PDTERARLKRILKELVDEGSGVIVRTAAEGASETE 619 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L +D LK+ W + +++K L GE LA RV+RD + + ++ V + Sbjct: 620 LRADVERLKKQWAAIEKKRKNANAPALLQGEPDLAIRVVRDIFNDDFTQLSVQGDQAWGE 679 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + E+ + P++ +K+ +T IF ++ ++ + L+RKV L SGG L+ID+TEAMT Sbjct: 680 ISEYVGDLAPDLANKMSRWTSEDDIFAAARIDEQLAKGLDRKVYLPSGGSLVIDRTEAMT 739 Query: 302 TVDIN-TGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+N L++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R V Sbjct: 740 VIDVNTGKFTGTGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLV 799 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L L + L +DR K V ++LGLV+MTRKR + + C C GRG + V Sbjct: 800 LRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLIEAFSTACDHCSGRGYTIHTDPV 859 Query: 421 CYE 423 Sbjct: 860 ERH 862 >UniRef50_D2NSV3 Ribonuclease G and E n=2 Tax=Rothia mucilaginosa RepID=D2NSV3_9MICC Length = 1288 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 164/449 (36%), Positives = 257/449 (57%), Gaps = 10/449 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++LV ++ ++ G+L E + + + ++GN+Y G+V VLP M+AAFVDIG Sbjct: 418 DRQMLVRQKDGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 477 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G +K I ++ G ++VQV KDP+G KGARLT+ Sbjct: 478 RGRNAVLYAGEVNWDVTGLDGAPRK------IENALKPGDSVLVQVTKDPIGHKGARLTS 531 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ++LP R+LV++PG S G+S+++ ++ER RLKK++ + E G I+RTAAEG E E Sbjct: 532 QVSLPGRFLVYVPGGSMTGISRKL-PDTERARLKKILKDKLPEGAGVIVRTAAEGASEEE 590 Query: 182 LASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D L+ W ++ E+ K + LY E L + +RD + + + V + Sbjct: 591 LTHDINRLRAQWEEIQEKAKSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTAMIVQGENAW 650 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 +++ + + P++ S+L+ + G +FD + + ++ +AL+RKV L SGG L+ID+TEA Sbjct: 651 DSIEAYVTYVAPDLVSRLQQWDGDDDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEA 710 Query: 300 MTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 MT VD+NTG F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R Sbjct: 711 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRD 770 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL L + L +DR K V ++LGLV+MTRKR + V C C GRG V + Sbjct: 771 LVLRRLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEPCEHCAGRGLVVHDQ 830 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPA 447 + +H +DR A+ Sbjct: 831 PLSGRSGGASDYIHRHERNDRKRSRAAAR 859 >UniRef50_B2KEH9 Ribonuclease, Rne/Rng family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEH9_ELUMP Length = 483 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 185/488 (37%), Positives = 295/488 (60%), Gaps = 19/488 (3%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E+L N + ETRVA ++ G L E+ ER IVGNIYK V VLPG+ +AFV+IG + Sbjct: 11 EVLANTSFEETRVAIVENGRLAELMWERRGAVNIVGNIYKATVENVLPGISSAFVNIGYE 70 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 K A+L+ SD++ G+E+K +I +++++GQ++MVQVVKD +GTKG ++T D+ Sbjct: 71 KNAYLYISDVL-------GDEKK-----NIEKVIKKGQEIMVQVVKDAIGTKGMKITMDV 118 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE---QGGFIIRTAAEGVGEA 180 TLP R+LV P S VGVS+ IE ER +L +V E ++ G I+RT AE + Sbjct: 119 TLPGRFLVLTPHQSFVGVSKNIEDNQERHKLNDMVQELAEKYLHGMGCIVRTEAEEATKD 178 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 EL + YL R W ++ + + + L+ ++ +V RD ++ +D++ YE Sbjct: 179 ELEREVKYLYRQWQSILNKFETLPSPSILHEDMDAVLQVSRDILSENIEVYYLDNKKDYE 238 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +L+F S+ PE+ K++ Y G+ PIF+ F++E+EI + K+ L +GG +II + E++ Sbjct: 239 NVLDFVSKNSPELKDKIKLYKGKTPIFEAFNIESEIDNLRKTKISLPNGGSIIIQEAESL 298 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+NTG F G ++ ++T+ TNIEA Q +A QLRLRN+GGI++IDFIDM +R RV Sbjct: 299 CAIDVNTGKFTGSKSQEETVTQTNIEAAQEVAHQLRLRNIGGIVVIDFIDMKKASNRHRV 358 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 + +L A+ +DR K + + LGLVEMTR+R +ES +L ECP CHG G V + E++ Sbjct: 359 VEALADAVHRDRAKIRILPITRLGLVEMTRERKKESTGSLLTEECPQCHGSGRVLSAESM 418 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 +I REI + + P +A+ +K ++S +E + + +K+Q + + Sbjct: 419 RIKIQREIYDLTQGRPGGNLRIVLHPELADQIKHQQSV----IEQNIHRSMKIQSDAQLS 474 Query: 481 QEQFDVVM 488 E + +V+ Sbjct: 475 WEDYKIVL 482 >UniRef50_D0WNB8 Putative S1 RNA binding domain protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WNB8_9ACTO Length = 940 Score = 537 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 161/415 (38%), Positives = 246/415 (59%), Gaps = 9/415 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E+L+ ++A ++ +L E ++ R + +VGN+Y GRV VLP M+AAFVDIG Sbjct: 328 KREMLIREQDGLNQIAVLEDDVLVEHYVARHTQVSMVGNVYLGRVQNVLPSMEAAFVDIG 387 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G R I + ++ G ++VQV KDP+G KGARLT Sbjct: 388 KGRNAVLYAGEVNWEAAGLEGRP------RRIEQALKSGDTVVVQVTKDPIGHKGARLTA 441 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ITL R+LV +P + G+S+++ + ER+RLK+++ E + G I+RTAAEG E + Sbjct: 442 QITLAGRHLVLVPSGAMTGISRKL-PDKERQRLKRLLREIVPAEHGVIVRTAAEGTSEDQ 500 Query: 182 LASDAAYLKRVWTKVMERKKRPQ-TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L +D L + W + + K + L GE LA RV+RD + + +++ + Sbjct: 501 LRADVERLAKTWQDIQTKAKNTKGAPMLLKGEPELAVRVVRDIFNEDFQSLKIQGAKAWR 560 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + E+ +E PE++ +LEH+TG IF V+ ++ +A +RKV L SGG L+ID+TEAM Sbjct: 561 TISEYVAELSPELSQRLEHWTGASDIFASHRVDEQLAKAFDRKVWLPSGGTLVIDRTEAM 620 Query: 301 TTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 T +D+NTG F G L++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R Sbjct: 621 TVIDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANREL 680 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 VL L + L +DR + V ++LGLV+MTRKR + + C C GRG + Sbjct: 681 VLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSTVCEACEGRGYI 735 >UniRef50_Q1MQA2 Ribonucleases G and E n=2 Tax=Desulfovibrionaceae RepID=Q1MQA2_LAWIP Length = 666 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 160/491 (32%), Positives = 256/491 (52%), Gaps = 6/491 (1%) Query: 2 TAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 ++L++V P E VA G L E IE I GNIYKG ++ + +QAAF++ Sbjct: 176 NKKMLISVIPGEQVEVAISSDGQLFEYFIEMNHHAKIRGNIYKGVINNIDANLQAAFINY 235 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G K FL ++ P E K I ++++ GQ+++VQVVK+P G KGA LT Sbjct: 236 GNTKNGFLQIDEVHPEYYLQPHEPTKLKKYPPIQKVLKAGQEILVQVVKEPTGNKGAFLT 295 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGE 179 T ++L R+LV PG +G+S+++E E ER RL++++ G G I+RT + G + Sbjct: 296 TWLSLAGRFLVLTPGQEQIGISRKVEDEEERTRLRELIKGLDPGSGLGAIVRTVSIGTSK 355 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D ++LKRVW ++ ++ ++ +Y E LA R +RD+ ++ I VD T Sbjct: 356 TTLQKDLSFLKRVWREIRKKATTEKSPCLIYEEPGLATRAVRDYLADDITEIWVDDPETK 415 Query: 240 EALLEFTSEYIPEMTSKLEHYTGR-QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 +A+ E T+ P T + Y +P+++ F + +I + R+V + SGG L+ DQTE Sbjct: 416 QAIQEVTTLLFPRKTKLVHLYQNNNEPLWEHFKLNKQIIQVHSREVIMPSGGRLVFDQTE 475 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ +DIN+G G N + + TN+EA IA+QLRLR++GG I+IDFI+M H R Sbjct: 476 ALMAIDINSGRIAGKTNFESMAYRTNMEAAATIAQQLRLRDIGGQIVIDFIEMKEPAHCR 535 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V L+ A+ DR + V S+ GL+++ R+R S + CP C G G + +E Sbjct: 536 DVEKELQLAMKADRARHDVGKMSSFGLLQVVRQRIGSSAISISQETCPYCQGTGQRRNIE 595 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYAS---PAVAEALKGEESHSLAEVEIFVGKQVKVQI 475 + +REI + + Y + L + + L +E G + ++I Sbjct: 596 WQAIQTLREIHKKMQQTVTAGKHEYIHTLDQELGLYLLNNKRNRLIALEQEFGIHLDIRI 655 Query: 476 EPLYNQEQFDV 486 L E D+ Sbjct: 656 SLLQKIENSDL 666 >UniRef50_C8XF15 Ribonuclease, Rne/Rng family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XF15_NAKMY Length = 1080 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 161/424 (37%), Positives = 247/424 (58%), Gaps = 14/424 (3%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 + V +VA ++ GIL E + + ++G+++ G+V VLP M+AAFVDIG + Sbjct: 370 MAVRQRGELAQVALLEDGILVEHFVSQTGADSLIGSVFLGKVQNVLPSMEAAFVDIGRGR 429 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 A ++A ++ + G+ R I + G ++ QV KDP+G KGARLTT I+ Sbjct: 430 NAVIYAGEVNWDAAGLGGK------ARRIESALSSGDTILAQVSKDPVGHKGARLTTQIS 483 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 LP R+LV++PG G+S+++ ++ER+RLK ++ E G IIRTAAEGV E ELA Sbjct: 484 LPGRFLVYVPGGGATGISRKL-PDTERKRLKAILDRIVPEDAGVIIRTAAEGVSEEELAR 542 Query: 185 DAAYLKRVWTKVMERKK-RPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL----TY 239 D LK W ++ R + + LY E +V+RD +++++R+ VD + Sbjct: 543 DVERLKAQWEEISRRAQAKGSAPTLLYAEPGTLIKVVRDLFNSDINRLVVDGDAGNDTVW 602 Query: 240 EALLEFTSEYIPEMTSKLEHYT-GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + ++ + PE+ +L + Q +F + ++ +I +ALERKV L SGG L+ID+TE Sbjct: 603 GPVSDYVNAVAPELADRLVRWDHDGQDVFANYRIDEQIAKALERKVHLPSGGSLVIDRTE 662 Query: 299 AMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 AMT VD+NTG + G NL++T+ N+EA + I RQLRLR++GGII++DFIDM E +R Sbjct: 663 AMTVVDVNTGKYTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNR 722 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 V+ L +AL +DR + V ++LGLV+MTRKR + CP C GRG V Sbjct: 723 ELVMRRLTEALGRDRTRHQVAEVTSLGLVQMTRKRMGTGLVEAFSEPCPHCGGRGIVLHE 782 Query: 418 ETVC 421 + Sbjct: 783 MPLA 786 >UniRef50_B8DIL9 Ribonuclease, Rne/Rng family n=3 Tax=Desulfovibrio RepID=B8DIL9_DESVM Length = 491 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 152/481 (31%), Positives = 255/481 (53%), Gaps = 9/481 (1%) Query: 4 ELLVNVTPSE-TRVAYIDGG----ILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFV 58 + ++V P E VA + G ++E ++E + GNIY+G ++ V +QAAFV Sbjct: 9 RMFISVLPGEQVEVALAEEGAKENQVKEYYVEMVHQAKTKGNIYRGIINNVDTNLQAAFV 68 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 + G DK FL ++ P + K + ++++ GQ+++VQVVK+P G+KGA Sbjct: 69 NYGADKNGFLQIDEVHPEYYNTPHDATKGKKYPLMQKVLKAGQEVLVQVVKEPTGSKGAF 128 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGV 177 LTT +++P R+LV PG +GVS+++E + ER RL++++ G G I+RT + G Sbjct: 129 LTTYLSMPGRFLVLTPGREQIGVSRKVEDDEERGRLREMLEGLNPGPGLGVIVRTVSAGT 188 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 + L D +LKR+W + ++ +Y E LA R +RD+ ++ + VD Sbjct: 189 SKTTLQRDLQFLKRLWKDIRKKGTEESAPCLIYKEPDLASRAVRDYLSDDVAEVWVDDEH 248 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 T + E++S P S ++ Y + +++ F ++ ++++ R+V L SGG L+ DQ Sbjct: 249 TATLIEEYSSLLFPRKGSLVKVYKDQTRTLWERFGIQRQLEQIYSREVTLPSGGRLVFDQ 308 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+ +DIN+G G N + TN+EA + IA+QL+LR++GG ++IDFI+M + +H Sbjct: 309 TEALMAIDINSGKISGKTNFESMALRTNMEAAETIAQQLKLRDIGGQVVIDFIEMRDRNH 368 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 R V L A+ DR + V S GL+++ R+RT S + CP C G G + Sbjct: 369 WREVEKILRNAMKNDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCKGSGLRRN 428 Query: 417 VETVCYEIMREIVRVHHAYDSD--RFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ 474 +E + +REI R A FL VA L + L ++E G + ++ Sbjct: 429 MEWQSLQALREIHRQLRALPHGTVTFLFETGAEVAMHLLNHKRERLLDLERQFGVHLDIR 488 Query: 475 I 475 Sbjct: 489 P 489 >UniRef50_C5CAZ2 Ribonuclease, Rne/Rng family n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CAZ2_MICLC Length = 1091 Score = 533 bits (1374), Expect = e-150, Method: Composition-based stats. Identities = 158/420 (37%), Positives = 244/420 (58%), Gaps = 14/420 (3%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++LV ++A ++ G+L E + + ++GN+Y G+V VLP M+AAFVDIG Sbjct: 227 DRKMLVRQRDQRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDIG 286 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G+ +K I ++ G ++VQV KD +G KGARLT+ Sbjct: 287 RGRNAVLYAGEVNWDAAQLDGKPRK------IENALKSGDTVLVQVTKDSVGHKGARLTS 340 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ++LP RYLV++PG S G+S+++ + ER RLKK++ ++ + G I+RTAAEG E E Sbjct: 341 QVSLPGRYLVYVPGGSMTGISRKL-PDVERSRLKKILKDHLPQDAGVIVRTAAEGTSEQE 399 Query: 182 LASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L +D L+ W + E+ + LY E L + +RD + + + V T+ Sbjct: 400 LQNDINRLRAQWEGIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEATW 459 Query: 240 EALLEFTSEYIPEMTSKLEHY----TGRQPIFDLFDVENEIQRALERKVELKSGGYLIID 295 + + + + P + +L H+ + ++ V+ ++ +ALERKV L SGG L+ID Sbjct: 460 DNIEAYVTYVAPHLLGRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVID 519 Query: 296 QTEAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 +TEAMT VD+NTG F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E Sbjct: 520 RTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLE 579 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 +R VL L + L +DR K V ++LGLV+MTRKR + V C C GRG + Sbjct: 580 ANRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGIL 639 >UniRef50_UPI0001C31D95 ribonuclease, Rne/Rng family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D95 Length = 636 Score = 532 bits (1372), Expect = e-150, Method: Composition-based stats. Identities = 195/516 (37%), Positives = 291/516 (56%), Gaps = 29/516 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGG------------------------ILQEIHIEREARRG 36 M ++LV+V ETRVA ++ + E+++ER R Sbjct: 1 MKKQVLVSVDRGETRVALLEATGDVAPAPRTSGRRRRKPANPSAGYRVAELYLERRGNRS 60 Query: 37 IVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI-MPHTECVAGEEQKQFTVRDISE 95 IVGNIYKG+V VL G++AAFVDIGL+K FLH +I +P E + I + Sbjct: 61 IVGNIYKGKVDNVLAGLEAAFVDIGLEKNGFLHVDEIVIPGVETPRRGRGQGKDGLKIHD 120 Query: 96 LVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLK 155 L+R GQ+++VQVVKDPL TKGARL+ ++T+P RY+V+ P VGVS+R+ + ER+RL+ Sbjct: 121 LLRPGQEVVVQVVKDPLKTKGARLSMELTIPGRYMVYTPQGEGVGVSRRL-PDKERDRLR 179 Query: 156 KVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELAL 215 K A + GG IIRTAA G + + YL ++ + +R + Q ++ E L Sbjct: 180 KEAARLDLQGGGAIIRTAAFGARREDFEREMQYLFKLNDVLAKRVEETQAPDLVFQEADL 239 Query: 216 AQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENE 275 + RV+RD +R VD + Y+ L+ F + PE+ ++E + P+F+ F VE E Sbjct: 240 SIRVVRDVFSDHFERAVVDDQKQYQRLVSFFTRTAPELVDRVELWEEEAPLFERFGVERE 299 Query: 276 IQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN---LDDTIFNTNIEATQAIA 332 IQ L R+V+L SGGYLIID EA+T +D+NTG+F+G L+DTI TN+EA + Sbjct: 300 IQGTLTRRVDLPSGGYLIIDYAEALTVIDVNTGSFIGRGRGARLEDTITRTNLEAAEEAV 359 Query: 333 RQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR 392 RQLRLR++GGII+IDFIDM +R VL +L ++L +DR KT V S LGLVEMTR+ Sbjct: 360 RQLRLRDIGGIIVIDFIDMARARNRDAVLKTLRKSLDEDRTKTFVVEISPLGLVEMTRQN 419 Query: 393 TRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEAL 452 E + ++ CPTC G G +++ ET+ + R + + ++++ L+ +P V Sbjct: 420 VTEGVREIMTRHCPTCGGEGVIRSEETIAIDFERRLRDIAKEHEAEALLLQINPRVGAVF 479 Query: 453 KGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 G + L ++E GK + + F + Sbjct: 480 TGNSARILRQLEEETGKWFHFEGSEGLPLDHFAITF 515 >UniRef50_B2HMG4 Ribonuclease E Rne n=28 Tax=Mycobacterium RepID=B2HMG4_MYCMM Length = 1017 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 160/421 (38%), Positives = 248/421 (58%), Gaps = 21/421 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ GI+ E + A +VGNIY G V VLP M+AAFVDIG + L+A ++ Sbjct: 362 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 421 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G ++K I + ++ G ++VQV KDP+G KGARLTT ++L RYLV++ Sbjct: 422 NWDAAGLGGADRK------IEQALKPGDYIVVQVSKDPVGHKGARLTTQVSLAGRYLVYV 475 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PGAS G+S+++ ++ER+RLK+++ E G IIRTA+EGV E ++ +D L+ W Sbjct: 476 PGASSTGISRKL-PDTERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVTRLQERW 534 Query: 194 TKVMERK-----KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 ++ + K LY E + +V+RD + + + V ++ + E+ S Sbjct: 535 NQIEAKAVEIKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINEYVSS 594 Query: 249 YIPEMTSKLEHYTGRQ--------PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 P++ SKL Y +F + ++ ++ +A++RKV L SGG L+ID+TEAM Sbjct: 595 VAPDLVSKLSKYEPAVGSEGQVGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAM 654 Query: 301 TTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 T VD+NTG F G NL+ T+ N+EA + I RQLRLR++GGI++IDFIDM E +R Sbjct: 655 TVVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDL 714 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 VL L +AL++DR + V+ ++LGLV++TRKR + CP C GRG + + Sbjct: 715 VLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPHCSGRGILLHADP 774 Query: 420 V 420 V Sbjct: 775 V 775 >UniRef50_C4K6Y9 RNase G (Ribonuclease G) n=2 Tax=Enterobacteriaceae RepID=C4K6Y9_HAMD5 Length = 495 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 284/496 (57%), Positives = 378/496 (76%), Gaps = 13/496 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRG--IVGNIYKGRVSRVLPGMQAAFV 58 MT+ELL+NVTP ETRVAYID ILQEI+IERE +VGNIY+GRV+R+LPGMQAAF+ Sbjct: 1 MTSELLINVTPFETRVAYIDDNILQEIYIERENENKTGLVGNIYQGRVTRILPGMQAAFI 60 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 DI L+KAAFLHASDI+ + + +DI+EL+ GQ++MVQV+KDPLG+KGAR Sbjct: 61 DIQLEKAAFLHASDIL-----SLKPPENEDQRQDIAELIHLGQNVMVQVIKDPLGSKGAR 115 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 LTT ITL SRYLV V +SQR+E+E ERERLK +V+ YCD++ GFI+RTAAEG+ Sbjct: 116 LTTHITLASRYLVLT-MTPEVAISQRLENEQERERLKNIVSSYCDKKNGFIVRTAAEGMD 174 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDF-ADAELDRIRVDSRL 237 E LASDAA+LK +W ++ K + ++ LY EL L +R+LRDF A LDR+R+D + Sbjct: 175 EKALASDAAFLKSLWANIIAGKTQNGSKNVLYTELPLKKRILRDFTVVASLDRVRIDDQQ 234 Query: 238 TYEALLEFTSEYIPEMTSKLEHY----TGRQPIFDLFDVENEIQRALERKVELKSGGYLI 293 TY +L F+ EYIPEM KLEHY Q +F + VENEIQ L +KV LKSGG LI Sbjct: 235 TYNSLKAFSEEYIPEMLPKLEHYPVEKKNNQTLFSFYHVENEIQSLLNKKVPLKSGGCLI 294 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 I+QTEAMTT+DINT FVG++NL++TIF+TNIEAT+ IARQLRLRNLGGIIIIDFIDM N Sbjct: 295 IEQTEAMTTIDINTAGFVGYKNLEETIFDTNIEATRVIARQLRLRNLGGIIIIDFIDMKN 354 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGT 413 E+H++ VL SL++AL++DRVKT+V FS LGL+E+TRKRT E+IE +LC+ C TC GRG Sbjct: 355 EEHKKNVLSSLKKALNQDRVKTTVGEFSPLGLIEITRKRTTENIEKILCDRCQTCEGRGW 414 Query: 414 VKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKV 473 K+ ETVC+EI R+++++HH+ DS + LVY S V++ L +++ +LA+++ +GK++++ Sbjct: 415 FKSPETVCHEIFRKMIQLHHSSDSQQMLVYVSNRVSDFLLHQKAETLAKIQCLLGKKIQI 474 Query: 474 QIEPLYNQEQFDVVMM 489 +I+PLY Q QF ++ + Sbjct: 475 KIDPLYTQNQFHILTI 490 >UniRef50_UPI0001BC2E10 putative ribonuclease n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2E10 Length = 1076 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 154/418 (36%), Positives = 248/418 (59%), Gaps = 11/418 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHI-EREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 +LV + +T++ ++ GI E ++ E + ++GN+Y G+V VLP M+AAF+DI Sbjct: 435 DRTMLVRESGEQTQLVVVEDGITVEHYLKENRQQSSLIGNVYLGKVQNVLPSMEAAFIDI 494 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G + A L+A ++ + G+ R I + G ++VQV KDP+G KGARLT Sbjct: 495 GKGRNAVLYAGEVNWDALGMDGK------ARRIEVALSPGDAVLVQVTKDPIGHKGARLT 548 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 + I+LP R+LV++PG S G+S+++ + ER RLKK++ E + G I+RTAAEG + Sbjct: 549 SQISLPGRFLVYVPGNSMTGISRKL-PDVERNRLKKLLKELVGDSNGVIVRTAAEGASDK 607 Query: 181 ELASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 EL++D L + W + ++ K + LY E + R++RD + + + +D Sbjct: 608 ELSTDVERLAKRWETIEKKSKSTKVLAPQLLYSEPDMIVRIIRDVFNEDFSSLVIDGDGA 667 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + + E+ P++ ++ Y+ + IFD + VE ++Q+AL+R V L SGG L+ID+TE Sbjct: 668 WNTIHEYVEAVAPDLLDRVHRYSEDEDIFDHYRVEEQVQKALQRTVNLPSGGSLVIDRTE 727 Query: 299 AMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 AMT +D+NTG F G NL++T+ N+EA + + RQ+RLR++GGII++DFIDM E +R Sbjct: 728 AMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEVIRQVRLRDIGGIIVVDFIDMVLESNR 787 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 V+ L + L +DR K V ++LGLV+MTRKR + L + GRG + Sbjct: 788 DLVVRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRIGTGLAESLVSAGADLSGRGLLL 845 >UniRef50_D1N7U6 Ribonuclease, Rne/Rng family n=2 Tax=Lentisphaerae RepID=D1N7U6_9BACT Length = 544 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 176/530 (33%), Positives = 278/530 (52%), Gaps = 45/530 (8%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++++N E R A ++ G L+E IER+ VG+IY G++ + P +QAAFVDIG Sbjct: 6 KQIILNCEKLERRFALLNNGRLEEYQIERDGNEPKVGDIYLGKIINLEPSLQAAFVDIGA 65 Query: 63 DKAAFLHASDIMPHTECVAGEE-------------------------------------- 84 +K AFLH +++P + + G Sbjct: 66 EKNAFLHYHEMLPGCDELLGRRDSDDDDDEKTVSGNEQPIQAKRQKRQEAKPNSKVNQEA 125 Query: 85 ---QKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGV 141 +K+ TV DI + + G +++VQVVK P+ TKGAR+TTDI++ RYLV MP + H+G+ Sbjct: 126 LRRKKKLTVADIPNIFKPGMEILVQVVKSPISTKGARVTTDISIAGRYLVLMPYSEHIGL 185 Query: 142 SQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERK 200 S RIE ER+RL+K++A E G I RT EG D L W K+ + Sbjct: 186 STRIEGGQERDRLRKILAALELPEGMGLICRTVGEGRRSTFFKRDLDLLLDNWRKIEKGM 245 Query: 201 KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE-MTSKLEH 259 LY E L +R +RDF E I VD ++E + + M K+ Sbjct: 246 DTRNAPALLYTEPNLVERTIRDFMTEEFQGIVVDDADASCQIIETLNRFGGRKMAEKVTL 305 Query: 260 YTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDT 319 Y +P+F+ + + ++++ +R+V L GG +++D+TEA+ +D+N+G + + Sbjct: 306 YNSGKPVFEAYRINDQLREVFQREVRLPGGGAIVVDETEALIAIDVNSGRGRKGADQPEF 365 Query: 320 IFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNG 379 I TN+EA + IARQLRLRN+GG++++DFIDM + R V ++++ + DR KT V Sbjct: 366 ILKTNLEAAEEIARQLRLRNIGGLVVLDFIDMRSARDREEVYRTMKRLVKDDRAKTKVLP 425 Query: 380 FSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH--AYDS 437 S LGL+EMTR+R ESI+ + CP CHG G VK+V ++ EI R + V Y + Sbjct: 426 LSRLGLMEMTRQREHESIKDQVFMPCPYCHGSGRVKSVVSMSVEIQRRLNTVLRESRYRN 485 Query: 438 DRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 V P + + L+ E++ L E+E + + +P+ + E+F +V Sbjct: 486 RPVRVIMHPDILQRLRNEDALLLRELEEKYKHDLSFRADPMLHSEEFKLV 535 >UniRef50_Q6AIU3 Probable RNAse E n=1 Tax=Desulfotalea psychrophila RepID=Q6AIU3_DESPS Length = 883 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 162/495 (32%), Positives = 263/495 (53%), Gaps = 10/495 (2%) Query: 4 ELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 LL+N P E R+A ++ G L+ IH+ R NIYK +V V +QAAFVD G Sbjct: 380 RLLINAEEPEECRLALLEDGRLESIHVSTVTRAQTKNNIYKAKVVAVEANLQAAFVDYGT 439 Query: 63 DKAAFLHASDIMPHTE-------CVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTK 115 K FL S+I P E++++ I +++ +GQ+L+VQVVK+ +G K Sbjct: 440 VKNGFLPFSEIHPEYYRADLSESARKNVEERRWRRLKIEDVMARGQELLVQVVKEEVGKK 499 Query: 116 GARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAA 174 GA +TT ++LP R +V MPG+ G+S++I E R +L+ + E G+I+RTA+ Sbjct: 500 GANMTTYLSLPGRCVVLMPGSDSAGISRKIVGEERRSQLRDTMRSLGIPEGTGWIVRTAS 559 Query: 175 EGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVD 234 + E LA D YL ++W V E+ + + +Y + R LR+ D + I VD Sbjct: 560 VDINEEALARDVTYLLKLWEDVREKGQEIKDVGLIYEDHRSVMRFLREHYDPSIQEILVD 619 Query: 235 SRLTYEALLEFTSEYIPEMTS-KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLI 293 + L E + EF S + K+ + G +PIF+ F VE++I+ + +V L SGG ++ Sbjct: 620 APLALEQVNEFVSMLPANQQNVKVRLHKGSRPIFNQFSVEDQIESIYQPQVSLPSGGSIV 679 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 ID TEA+ +D+N+G+ +N D++IF N+EA ARQLRLR+LGG++++DFIDM N Sbjct: 680 IDPTEALVAIDVNSGSTSKGKNFDESIFQANMEAASEFARQLRLRDLGGLVVVDFIDMRN 739 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGT 413 + H V ++ A+ +D+ K S GL++++R++ IE C C GRG Sbjct: 740 KKHINAVEKQVKIAMKRDKAKVDFTRISKFGLMQISRQKLGSPIEAGAYRVCQHCKGRGI 799 Query: 414 VKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKV 473 V+ VET+ +R I + + VA L + + E+E ++ + Sbjct: 800 VRAVETLALFYLRRIQTGASRKPVVKIECHFPLDVASYLLNNKRQEITEMENNNEVEIMI 859 Query: 474 QIEPLYNQEQFDVVM 488 +E + + ++V Sbjct: 860 VVESRFKPAENEIVF 874 >UniRef50_C0VZF1 Ribonuclease E n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZF1_9ACTO Length = 819 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 159/421 (37%), Positives = 250/421 (59%), Gaps = 9/421 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E++V ++A ++ G+L E ++ R ++ +VGNIY GRV VLP M+AAFVD+G Sbjct: 182 KREMIVREQNGLNQIAVLEDGLLVEHYVARRTQQTMVGNIYLGRVQNVLPSMEAAFVDLG 241 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ +AG R I + ++ G ++VQV KDP+G KGARLT+ Sbjct: 242 KGRNAVLYAGEVNWEAVGLAGRP------RRIEQALKSGDTVLVQVTKDPIGHKGARLTS 295 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ITL RYLV +P G+S+++ E ER RLKK++++ + G I+RTAAEG E + Sbjct: 296 QITLAGRYLVLVPAGQMTGISRKL-PERERTRLKKLLSKIVPKDYGVIVRTAAEGATEEQ 354 Query: 182 LASDAAYLKRVWTKVMERKKRPQT-RYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L D L+ W ++ +++K+ Q L E LA RV+RD + + V T++ Sbjct: 355 LRDDVTRLQAQWEEIEKKQKKTQKVPVLLRSEPELAVRVVRDVFTEDFQSLTVQGEETWQ 414 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + E+ E P++ +L + ++ +F + ++ ++ + ++RKV L SGG L+ID+TEAM Sbjct: 415 TVQEYVDELAPDLRDRLRRWVNKEDVFTVHRIDEQLTKGMDRKVWLPSGGSLVIDRTEAM 474 Query: 301 TTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 T +D+NTG F+G L++T+ N+EA + I RQLRLR++GGI++IDF+DM E +R Sbjct: 475 TVIDVNTGKFIGSGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVLESNRDL 534 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 VL L + L +DR + V ++LGLV+MTRKR E + C C GRG + Sbjct: 535 VLRRLVECLGRDRTRHQVTEITSLGLVQMTRKRVGEGLVEAFSTPCECCDGRGFIVHQNP 594 Query: 420 V 420 V Sbjct: 595 V 595 >UniRef50_B0TYI3 Ribonuclease E n=18 Tax=Francisella RepID=B0TYI3_FRAP2 Length = 890 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 155/491 (31%), Positives = 259/491 (52%), Gaps = 11/491 (2%) Query: 3 AELLVN-VTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++L+N + ETR+A +D G L ++ IE R NIYKG +SR+ P + A FV+ G Sbjct: 2 KKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 DK FL ++ + + +I+ L+ +GQ+L+VQ+ K+ G KGA LTT Sbjct: 62 EDKNGFLPFKEVSEYYL------KDVPNGENIAHLLSEGQELIVQIDKEERGDKGAALTT 115 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 ITL Y+V +P G+S+R+E E +RE+LKK + + + I RTA Sbjct: 116 FITLAGSYMVLLPNNPDGGGISRRVEGE-DREKLKKYLKDLNIPKNMSVIARTACVECSF 174 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D L +W + + + + L+ E + R +RD ++ I VDS+ Y Sbjct: 175 EELKHDFDTLVELWDSIFKAYHKIKKPDLLHKESDIIVRTVRDHLKEDVKEIIVDSKECY 234 Query: 240 EALLEFTSEYIPEMT-SKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 E + +K++ Y PIF F ++ +I+ A +R++ L SGG ++ID TE Sbjct: 235 EDVKRQLGLLRQSFDINKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTE 294 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ +D+N+ +++ T F TN+EA + +ARQLR+R+LGG++I+DFIDM+ +R+ Sbjct: 295 ALVAIDVNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRK 354 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 +V L +AL +D+ + ++ S LGLVE++R+R SI + +CP C G G +KT + Sbjct: 355 QVEEKLMEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQ 414 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPL 478 I+R+I D++ V +A + E+ S+ E+E +V + Sbjct: 415 ATALTILRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISEVKVMLIPNFN 474 Query: 479 YNQEQFDVVMM 489 +F + + Sbjct: 475 MESPKFQMQRI 485 >UniRef50_A0R152 Ribonuclease, Rne/Rng family protein n=9 Tax=Corynebacterineae RepID=A0R152_MYCS2 Length = 1037 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 156/417 (37%), Positives = 247/417 (59%), Gaps = 17/417 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ G++ E + A +VGNIY G V VLP M+AAFVDIG + L+A ++ Sbjct: 402 TQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 461 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G+ +K I + ++ G ++VQV KDP+G KGARLTT ++L RYLV++ Sbjct: 462 NWEAAGLGGQNRK------IEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYV 515 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PGAS G+S+++ ++ER+RLK+++ E G IIRTA+EGV E ++ SD L++ W Sbjct: 516 PGASSTGISRKL-PDTERQRLKEILREVVPSDAGVIIRTASEGVKEEDIRSDVERLQKRW 574 Query: 194 TKVMERK-----KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 +++ + K+ LY E + +V+RD + + + V + + + Sbjct: 575 SEIEAKAAEVTEKKAGAAVALYEEPDVLVKVIRDLFNEDFSSLIVSGDEAWNTINSYVEA 634 Query: 249 YIPEMTSKLEHYTGRQP----IFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 P++ +L Y P +F + ++ ++ +A++RKV L SGG L+ID+TEAMT VD Sbjct: 635 VAPDLMPRLTKYEPAGPDAPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVD 694 Query: 305 INTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG F G NL+ T+ N+EA + I RQLRLR++GGI++IDFIDM E +R VL Sbjct: 695 VNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRR 754 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L +AL++DR + V+ ++LGLV++TRKR + C C GRG V + + Sbjct: 755 LTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTACTHCGGRGIVLHGDPI 811 >UniRef50_C2KPN3 Ribonuclease G n=3 Tax=Actinomycetaceae RepID=C2KPN3_9ACTO Length = 817 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 153/415 (36%), Positives = 243/415 (58%), Gaps = 9/415 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E++V +VA ++ G+L E ++ R + +VGN+Y G+V VL M+AAFVDIG Sbjct: 230 KREMVVRGRDGLNQVALLEDGLLVEHYVSRHTQTTMVGNVYLGKVQNVLSSMEAAFVDIG 289 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + + + I E + G ++VQV KDP+G KGARLT+ Sbjct: 290 KGRNAVLYAGEVNWDAAGLNSKTGR------IEEALSPGDMVLVQVTKDPIGHKGARLTS 343 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ITL R+LV +P + G+S+++ E ER+RLK V+ G I+RTAAEG E + Sbjct: 344 QITLAGRHLVLVPSGAMTGISRKL-PEEERKRLKTVLKTMIPAGFGVIVRTAAEGATEEQ 402 Query: 182 LASDAAYLKRVWTKVMERKKRPQ-TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L D L ++W + +++ RP+ + L+ E LA RV+RD + ++ + + + Sbjct: 403 LRVDVERLVKIWEDIEKKRARPRNSPQLLHAEPELAVRVVRDIFNEDISSLTIQGEEAWH 462 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + ++ E PE+ +L + +F ++ ++ + ERKV L SGGYLIID+TEAM Sbjct: 463 TISKYVKELSPELGERLHFWEDDSDVFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTEAM 522 Query: 301 TTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 T +D+NTG ++G L++T+ N+EA + I RQLRLR++GGI++IDF+DM E +R Sbjct: 523 TVIDVNTGRYIGAGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNRDL 582 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 VL L + L +DR + V ++LGLV+MTRKR + + +C C GRG + Sbjct: 583 VLRRLVECLGRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTQCECCDGRGFI 637 >UniRef50_A6WDN2 Ribonuclease, Rne/Rng family n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WDN2_KINRD Length = 1244 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 159/404 (39%), Positives = 243/404 (60%), Gaps = 12/404 (2%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 ++V +T++ ++ GIL E + + A+ +VGN+Y GRV VLP M+AAF+D+G + Sbjct: 736 MVVRQQADKTQIGVLEDGILVEHYGAKLAQTTMVGNVYLGRVQNVLPSMEAAFIDVGKGR 795 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 A L+A ++ + G+ R I ++ G ++VQV KDP+G KGARLT+ ++ Sbjct: 796 NAVLYAGEVNWDAAGLEGQP------RRIEAALKSGDPVLVQVTKDPVGHKGARLTSQVS 849 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 LP RYLV++P S G+S+++ ++ER RLKKV+ + E G I+RTAAEGV E ELA+ Sbjct: 850 LPGRYLVYVPRGSMTGISRKL-PDTERARLKKVLKQVVPEGAGVIVRTAAEGVAEEELAA 908 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 D L+ W + + L+GE L RV+RD + + ++ + +E + Sbjct: 909 DVQRLQATWEAIQAKASSKNAPVLLHGEPDLTVRVVRDVFNEDFTKLVISGDEAWETVRG 968 Query: 245 FTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + P++ +LE + G + +F ++ ++Q+AL RKV L SGG L+ID TEAM Sbjct: 969 YVDDVAPDLAERLERWDGGAGGAEDVFAHHRIDEQLQKALGRKVWLPSGGSLVIDPTEAM 1028 Query: 301 TTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 VD+NTG F G L++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R Sbjct: 1029 HVVDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDL 1088 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 VL L + L +DR K V ++LGLV+MTRKRT + + VL Sbjct: 1089 VLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRTGQGLAAVLDE 1132 >UniRef50_C2BMV7 Ribonuclease E n=3 Tax=Corynebacterium RepID=C2BMV7_9CORY Length = 1294 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 155/429 (36%), Positives = 245/429 (57%), Gaps = 23/429 (5%) Query: 2 TAELLVNVTPSE------TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQA 55 ++V E T+V ++ +L E + E++ ++GNIY GRV VLP M+A Sbjct: 404 ERTMVVRDKEREDGAGIITQVGVLEDDLLVEHFVTTESQASLIGNIYLGRVQNVLPSMEA 463 Query: 56 AFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTK 115 AFVDIG + L+A +I + G R + ++ G ++VQV KDP+G K Sbjct: 464 AFVDIGQGRNGVLYAGEIDWRKTKLHGR------ARKVENALKSGDQVLVQVAKDPIGHK 517 Query: 116 GARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAE 175 GARLTT I+L RYLV++PG G+S+++ ER+RLK ++ GG IIRTAAE Sbjct: 518 GARLTTQISLAGRYLVYVPGGRSAGISRKL-PAPERKRLKDILGRVVPGDGGAIIRTAAE 576 Query: 176 GVGEAELASDAAYLKRVWTKVMERKKRPQT-----RYQLYGELALAQRVLRDFADAELDR 230 V E +A+D L W ++ K+ ++ +Y E + +V+RD + + Sbjct: 577 NVPEEAIATDVNRLHSRWEDIVAHAKKEKSSKGAKPVTMYEEPNMLIKVVRDLFNEDFTE 636 Query: 231 IRVDSRLTYEALLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVEL 286 + VD + ++ + + P++ ++ Y G Q F+ + ++ ++ +AL RKV L Sbjct: 637 LIVDGKRSFNTVRAYVDSMAPDLADRVVRYRAKDHGGQDAFEAYRIDEQLHKALSRKVWL 696 Query: 287 KSGGYLIIDQTEAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIII 345 SGG L+ID+TEAMT +D+NTG F G NL++T+ N+EA + I RQ+RLR+LGG+I+ Sbjct: 697 PSGGTLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIV 756 Query: 346 IDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNEC 405 +DFIDM +++ VL L++AL +DR + V+ ++LGLV+MTRKR + EC Sbjct: 757 VDFIDMVLPENQDLVLRRLKEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTEC 816 Query: 406 PTCHGRGTV 414 C+GRG + Sbjct: 817 ECCNGRGII 825 >UniRef50_C0XRI1 Ribonuclease E (Fragment) n=2 Tax=Corynebacterium RepID=C0XRI1_9CORY Length = 743 Score = 523 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 160/417 (38%), Positives = 248/417 (59%), Gaps = 17/417 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+V ++ G+L E + + ++GNIY GRV VLP M+AAF+DIG ++ L+A ++ Sbjct: 252 TQVGVLEDGVLAEHFVTSDQNASMIGNIYLGRVQNVLPSMEAAFIDIGQNRNGVLYAGEV 311 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G R I + ++ G +MVQV KDP+G KGARLTT I+L RYLV++ Sbjct: 312 DWKAAGLGGR------SRRIEQALKSGDQVMVQVTKDPVGHKGARLTTQISLAGRYLVYV 365 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG G+S+++ ER+RLK+++A+ +GG IIRTAAEGV E +A+D L W Sbjct: 366 PGGRSAGISRKL-PAPERKRLKEILAKVVPGKGGAIIRTAAEGVSEEAIAADVTRLHNQW 424 Query: 194 TKVMERKKRPQT-----RYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 + E+ +R ++ LY E L +V+RD + + ++ VD + + + + S Sbjct: 425 ETLQEQAEREKSSKGAKPVTLYEEPNLLVKVVRDLFNEDFSKLIVDGKRPWNTVHAYVSS 484 Query: 249 YIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 P++ +L Y Q F+ + V+ +IQ+AL R V L SGG L+ID+TEAMT +D Sbjct: 485 VAPDLEDRLVRYDRAAHDGQDAFEAYRVDEQIQKALSRTVWLPSGGTLVIDRTEAMTVID 544 Query: 305 INTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG F G +L++T+ N+EA + I RQ+RLR++GG+II+DFIDM +++ VL Sbjct: 545 VNTGKFTGSGGSLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMILPENQELVLRR 604 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L++AL +DR + V+ ++LGLV+MTRKR + C C GRG + + V Sbjct: 605 LKEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFSTPCECCGGRGIIVADDPV 661 >UniRef50_C4PNX0 Ribonuclease E n=17 Tax=Chlamydiales RepID=C4PNX0_CHLTZ Length = 512 Score = 522 bits (1346), Expect = e-147, Method: Composition-based stats. Identities = 169/500 (33%), Positives = 286/500 (57%), Gaps = 15/500 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++L+N+ E R A++ G L ++ IER+ R + GNIY+GRV+ +L +Q+AF++I Sbjct: 1 MENDILLNIESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNILRNIQSAFINI 60 Query: 61 GLDKAAFLHASDIMPHTECV------------AGEEQKQFTVRDISELVRQGQDLMVQVV 108 + F+H SD++ +++ A + ++ + I EL++ ++VQVV Sbjct: 61 DERENGFIHISDVLENSKKFEQMFDIDSDADHAEPQPEETSEAPIEELLKLDSPVLVQVV 120 Query: 109 KDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGG 167 K+P+GTKGARLT++I++P RYLV +P + H GVS++IE R++LK+++ + + G Sbjct: 121 KEPIGTKGARLTSNISIPGRYLVLLPNSPHRGVSRKIEDPLMRDQLKQLIRSFEMPQNMG 180 Query: 168 FIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAE 227 I RTA+ L ++A L W ++E+ P LY E + ++ + D Sbjct: 181 LICRTASISASTETLINEAQNLLNTWQSILEKFYSPDHPSLLYEETDILKKAVMTCVDKS 240 Query: 228 LDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELK 287 R+ +D TY+ +Y P+ T K+E+Y P+F+ F++E EI RA +RK+ L Sbjct: 241 YKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATKRKIWLS 300 Query: 288 SGGYLIIDQTEAMTTVDINTGAFVGHRN-LDDTIFNTNIEATQAIARQLRLRNLGGIIII 346 SGGYL D+TEAM T+D+N+G N +++T+ N+EA + IARQLRLRN+GG++II Sbjct: 301 SGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNIGGLVII 360 Query: 347 DFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECP 406 DFIDM + ++RRVL L++ + D + ++ S GLVEMTR+R RES+ L CP Sbjct: 361 DFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQTLFTTCP 420 Query: 407 TCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESH-SLAEVEI 465 C+G +KT E++ EI R++ ++ + + P +A +K E+ L + Sbjct: 421 YCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVELIRLAK 480 Query: 466 FVGKQVKVQIEPLYNQEQFD 485 + ++++ + + Sbjct: 481 QLKAKLQINTSDSIHLNHYQ 500 >UniRef50_Q1D0P4 Ribonuclease, Rne/Rng family n=7 Tax=Proteobacteria RepID=Q1D0P4_MYXXD Length = 936 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 178/427 (41%), Positives = 261/427 (61%) Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G + + E+ K I +L++ GQ+++VQ+ KDP+GTKGARLT Sbjct: 327 GEKDKGRRPQEEKRRGDKHEDKEKAKPRRTDKIEDLLKVGQEVVVQISKDPIGTKGARLT 386 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 + I++P R+LVFMP HVG+S+RI +E ER RL+ +V GFI+RT AE V + Sbjct: 387 SHISIPGRHLVFMPTVDHVGISRRISNEKERRRLRDIVDRLRPPGTGFIVRTVAENVPQE 446 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 +L SD +L VW +V+ + ++ L+ +L L R RD +++++ VD R YE Sbjct: 447 KLESDIRFLIEVWNQVVRKNEKRGGPGLLHPDLDLILRATRDLFAHDVEKLVVDDREEYE 506 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +L F + P + ++ + G +FD + +E E+QRA +RKV LKSGGYLIIDQ EA+ Sbjct: 507 RILGFVTAQDPALRDRVALHEGDDTVFDAYGIEQELQRATQRKVWLKSGGYLIIDQAEAL 566 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+N+G +VG ++L++TI N+EA + I QLRLRN+GGIII DFIDM +R +V Sbjct: 567 TAIDVNSGRYVGKKSLEETITKINVEAAKEIVYQLRLRNIGGIIICDFIDMEKAQNRDKV 626 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 +L++AL +D+ KT+V S LGLVEMTRKR RESI +L +CP C G G VKT TV Sbjct: 627 FKALQEALGRDKAKTNVLRISELGLVEMTRKRVRESIGRMLHEDCPYCDGNGFVKTATTV 686 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 YEI REI R Y ++ + VA L+GEE + L + K ++V+ + Y+ Sbjct: 687 AYEIFREIRREAPGYKDSTLVINCNAEVARLLQGEERNELRHLMDRYNKSIQVKAQQNYH 746 Query: 481 QEQFDVV 487 +EQ+D+ Sbjct: 747 REQYDIY 753 Score = 107 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 45/73 (61%), Positives = 60/73 (82%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M++ L++N ETRVA ++GG + E ++ER+ +G+VGNIYKGRV RVLPGMQAAFVDI Sbjct: 1 MSSILVINAAGRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDI 73 GL+KAAFL+ SD+ Sbjct: 61 GLEKAAFLYVSDV 73 >UniRef50_D1Y9V9 S1 RNA binding domain protein n=3 Tax=Propionibacterium acnes RepID=D1Y9V9_PROAC Length = 874 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 153/420 (36%), Positives = 242/420 (57%), Gaps = 13/420 (3%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +++V + +++A ++ G+L E +++R + +GNIY G+V VLP M+AAF+DIG Sbjct: 428 DRKMIVRQSDDYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 487 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ GE+++ I +++ G ++VQV KDP+G KGARLT+ Sbjct: 488 RGRNAVLYAGEVDWAKYGKEGEDKR------IEHVLKSGDQVLVQVTKDPVGAKGARLTS 541 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I++P R++V+ PG G+S+++ SER+RLKK+V I+RTAAEG E + Sbjct: 542 HISVPGRFVVYSPGGHLSGISRKLAD-SERKRLKKIVENNIPSDASVIVRTAAEGATEED 600 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDS----RL 237 L D LK W + + + LY E L R++RD A+ + + Sbjct: 601 LVRDINRLKVQWEVIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDD 660 Query: 238 TYEALLEFTSEYIPEMTSKLEHYT-GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 Y+ + + PEM S+L H+ + F + ++ ++ +ALERKV L SGG L+ID+ Sbjct: 661 AYDTIKAYVDHVAPEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDR 720 Query: 297 TEAMTTVDINTGAFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 TEAMT +D+NTG F G NL+ T+ N+EA + I RQLRLR++GGII+IDFIDM Sbjct: 721 TEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPT 780 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 +R ++ L + L +DR + V ++LGLV+MTRK+ + +C C GRG + Sbjct: 781 NRELLVRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRR 840 >UniRef50_C5VAX0 Ribonuclease E n=5 Tax=Corynebacterium RepID=C5VAX0_9CORY Length = 929 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 159/458 (34%), Positives = 249/458 (54%), Gaps = 21/458 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+V ++ +L E + + + + GNIY GRV VLP M+AAF+DIG + L+A ++ Sbjct: 306 TQVGVLEDDMLVEHFVTSDTQSSLAGNIYLGRVQNVLPAMEAAFIDIGKGRNGVLYAGEV 365 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G R I + ++ G ++VQV KDP+G KG RLTT I+L RYLV++ Sbjct: 366 DWRAANLGGR------HRKIEQALKSGDQVLVQVAKDPIGQKGPRLTTQISLAGRYLVYV 419 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG G+S+++ ER+RLK ++ G IIRTAAEGV E +A+D L +W Sbjct: 420 PGGKSAGISRKL-PAPERKRLKAILKNVVPADGSVIIRTAAEGVPEDAIAADVNRLHSLW 478 Query: 194 TKVMERKKRPQ-----TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 ++ ER + + +Y E + +V+RD + + + VD + + + Sbjct: 479 EQIQERTLKEKESKGTKPVTMYEEPNMLVKVVRDLFNEDFTSLVVDGNRAWNTVHAYIQS 538 Query: 249 YIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 P++ +LE + Q F+ V+ ++++AL RKV L SGG L+ID+TEAMT +D Sbjct: 539 VAPDLLDRLEKFDREAHDGQDAFEALRVDEQLKKALSRKVWLPSGGTLVIDRTEAMTVID 598 Query: 305 INTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG F G NL++T+ N+EA + I RQ+RLR+LGG+I++DFIDM +++ VL Sbjct: 599 VNTGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRR 658 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYE 423 L +AL +DR + ++ ++LGLV++TRKR + EC C GRG + + V + Sbjct: 659 LTEALGRDRTRHQISEVTSLGLVQITRKRLGTGLLETFATECEECSGRGVLIHDDPVEHH 718 Query: 424 IM--REIVRVHHAYDSDRFLVYASPAVAEALKGEESHS 459 + R R H PAV +ES Sbjct: 719 TISDRPERRGKHGVPHQDPTR--HPAVLAMEHQDESDE 754 >UniRef50_B8CXZ3 Ribonuclease, Rne/Rng family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXZ3_HALOH Length = 489 Score = 519 bits (1338), Expect = e-146, Method: Composition-based stats. Identities = 187/486 (38%), Positives = 301/486 (61%), Gaps = 1/486 (0%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++++N E R A + +L++I IE ++ + IVGN+Y+ RV VLPGMQAAFVDI Sbjct: 1 MVNQIIINSGIKEKRAAILMDNVLEDIVIELDSYKKIVGNVYRARVIDVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK AFLH SDI P + + +K+ + I +++ GQ+LMVQVVK+P+ KGA++T Sbjct: 61 GYDKNAFLHVSDIYPLLDEKQLKLKKEGKL-GIQHVLQPGQELMVQVVKEPIYEKGAKVT 119 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I+LP RYLV +PG +S++I+ ER+RLKK+V + D G IIRT + Sbjct: 120 CKISLPGRYLVLLPGEYRTAISRKIKDFDERDRLKKIVGKLKDPDMGLIIRTNSRYKKAD 179 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L D +YLKR WT++ E + +Y +L + ++RD+ + ++D++ +D Y Sbjct: 180 LLELDYSYLKRTWTQIKENYNNSKAPDLIYEHASLLKTIVRDYLNKDVDKVLIDDESDYR 239 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 LLE + + P++ +++ Y + PIF ++ +E E++RA+ +K+ L SGG+++I+QTEA+ Sbjct: 240 VLLELSEKLAPDLKNRINLYNKKMPIFHVYGIEKELERAIRKKIWLDSGGFIVIEQTEAL 299 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+NTG + G +N TI TN+EA + IARQLRLR++GGIIIIDFIDM H++ V Sbjct: 300 VAIDVNTGKYTGKKNAARTILKTNLEAAREIARQLRLRDIGGIIIIDFIDMKERRHQQEV 359 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L + E+ L+KDR TS+ G + LGL+EMTR++ RE + ++ EC C G+G + + +V Sbjct: 360 LETFEKELAKDRSVTSIQGLTKLGLLEMTRQKVREGLGELMQKECSYCRGKGLILSANSV 419 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 I+R I + + R +V P V +LKG+ L ++ G ++++ + Sbjct: 420 AESIIRNIQLKKASEEFSRAVVECHPLVVSSLKGDNGEVLQKIFKKTGVSLELKPVNSLH 479 Query: 481 QEQFDV 486 E++ + Sbjct: 480 IEKYRI 485 >UniRef50_B0UJB2 Ribonuclease, Rne/Rng family n=4 Tax=Methylobacterium RepID=B0UJB2_METS4 Length = 1092 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 128/404 (31%), Positives = 207/404 (51%), Gaps = 2/404 (0%) Query: 80 VAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASH 138 + + I E++++ Q ++VQVVK+ G KGA LTT ++L RY V MP Sbjct: 394 IPDRPRAPRRHYKIQEVIKRRQVILVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGRG 453 Query: 139 VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVM 197 G+S++I S ++R+RLK++ A+ + G I+RTA + E+ D YL R+W V Sbjct: 454 GGISRKITSAADRKRLKEIAADLEVPDGMGVILRTAGASRTKPEIKRDFEYLMRLWESVR 513 Query: 198 ERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKL 257 E +Y E +L +R +RD + ++D + V Y +F +P + + Sbjct: 514 ELTLSSSAPALVYEEGSLIKRAIRDLYNKDIDEVLVAGDDAYREAKDFMRMLMPSQSKVV 573 Query: 258 EHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLD 317 + Y P+F + VE ++ V L+SGGYL+I+ TEA+ ++D+N+G +++ Sbjct: 574 KPYRDPTPLFARYGVEQQLDAMFSNHVALRSGGYLVINPTEALVSIDVNSGRATREHDIE 633 Query: 318 DTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSV 377 DT TN+EA + +ARQLRLR+L G+I+IDFIDM + + R V L + L DR + V Sbjct: 634 DTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKLNECLKDDRARIQV 693 Query: 378 NGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDS 437 S GL+EM+R+R R + CP C G G V+ +V +I+R I S Sbjct: 694 GRISPFGLLEMSRQRIRTGVLESSSVPCPHCGGSGFVRATSSVALQILRAIEEALIKSSS 753 Query: 438 DRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQ 481 ++ VA + ++ L E+E G + V + Sbjct: 754 HNLILRTRTDVALYILNQKRGHLRELETRFGVSITVSADERLPP 797 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + P ETRV + G ++E E RR + GNIY +V+RV P +QAAFV+ Sbjct: 1 MANKMLIDASHPEETRVVTVKGSKVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQ 85 G ++ FL S+I P + ++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADR 86 >UniRef50_B6JHD4 Ribonuclease E (RNase E) n=19 Tax=Alphaproteobacteria RepID=B6JHD4_OLICO Length = 1123 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 138/408 (33%), Positives = 215/408 (52%), Gaps = 2/408 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E V + I E++++ Q ++VQVVK+ G KGA LTT ++L RY V MP A Sbjct: 408 EEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 467 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I S +R RLK VV + E G I+RTA + E+ D YL R+W Sbjct: 468 RGGGISRKITSAQDRNRLKDVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWET 527 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V + + Q +Y E +L +R LRD + E+D + V Y +F +P Sbjct: 528 VRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEVLVSGEEGYHEARDFMKMLMPSNVR 587 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y QP+F VE+++ V L+SGGYL+I+QTEA+ ++D+N+G + Sbjct: 588 AVKLYRDNQPLFSRMGVESQLDAMFSPVVTLRSGGYLVINQTEALVSIDVNSGRSTREHH 647 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA + +ARQLRLR+L G+I+IDFIDM+ + + R V L L +DR + Sbjct: 648 IEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARI 707 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R S+ CPTC G G V++V +V +++R + Sbjct: 708 QVGRISHFGLLEMSRQRIRASVLESSTEPCPTCGGIGHVRSVASVALQLLRSLEEQLMKS 767 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 + + V VA + + L ++E + V +P +Q Sbjct: 768 GTHNYTVRTRTDVALYVLNHKRGHLRDLEEAFQVTLAVIADPTVGGQQ 815 Score = 89.8 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV + G ++E E R+ + GNIY +V+RV P +QAAF++ Sbjct: 107 MPNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIE 166 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G ++ FL S+I P + +++ Sbjct: 167 YGGNRHGFLAFSEIHPDYYQIPVADRQ 193 >UniRef50_C8NQN5 Ribonuclease E n=5 Tax=Corynebacterium RepID=C8NQN5_COREF Length = 1148 Score = 516 bits (1329), Expect = e-145, Method: Composition-based stats. Identities = 167/437 (38%), Positives = 254/437 (58%), Gaps = 24/437 (5%) Query: 1 MTAELLV------NVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQ 54 M ++V + T T+V ++ +L E + +++ +VGNIY GRV VLP M+ Sbjct: 350 MERRMIVRERQRTDGTGLVTQVGVLEDDLLVEQFVTSDSQSSMVGNIYLGRVQNVLPSME 409 Query: 55 AAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGT 114 AAF+DIG + L+A ++ + G R I + ++ GQ ++VQV KDP+G Sbjct: 410 AAFIDIGKGRNGVLYAGEVDWKAAGLGGRG------RRIEQALKSGQKVLVQVTKDPVGH 463 Query: 115 KGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAA 174 KGARLTT I+L RYLV++PG G+S+++ ER+RLK+++ QGG IIRTAA Sbjct: 464 KGARLTTQISLAGRYLVYVPGGRSAGISRKLPGP-ERKRLKEILGRVVPPQGGTIIRTAA 522 Query: 175 EGVGEAELASDAAYLKRVWTKVMERKKRPQT-----RYQLYGELALAQRVLRDFADAELD 229 EGV E +A+D L +W ++ ER K+ + +Y E + +V+RD + + Sbjct: 523 EGVSEENIAADVNRLHTLWEQIQERTKQEKKSRNTRPVTMYEEPDMLVKVIRDLFNEDFT 582 Query: 230 RIRVDSRLTYEALLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVE 285 + VD + + + P++ S++EH+ + F+ F + +++ A+ RKV Sbjct: 583 SLIVDGDRAWNTVRAYIQSVAPDLVSRVEHFDRADYDGKDAFEAFGLNTQLEEAMSRKVN 642 Query: 286 LKSGGYLIIDQTEAMTTVDINTGAFVGHR--NLDDTIFNTNIEATQAIARQLRLRNLGGI 343 L SGG LIID+TEAMT +DINTG +VG NL++T+ NIEA + I RQLRLR++GG+ Sbjct: 643 LPSGGSLIIDKTEAMTVIDINTGRYVGKGVGNLEETVTLNNIEAAEEIVRQLRLRDIGGM 702 Query: 344 IIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 I+IDFIDM ++R VL L +AL DR + V+ ++LGLV+MTRKR + + Sbjct: 703 IVIDFIDMVLPENRDLVLRRLNEALENDRTRHQVSEVTSLGLVQMTRKRIGAGLLETFSS 762 Query: 404 ECPTCHGRGTVKTVETV 420 EC C GRG V + V Sbjct: 763 ECEHCAGRGLVIHPDPV 779 >UniRef50_D1B5Z1 Ribonuclease, Rne/Rng family n=3 Tax=Synergistaceae RepID=D1B5Z1_THEAS Length = 496 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 177/487 (36%), Positives = 264/487 (54%), Gaps = 27/487 (5%) Query: 3 AELLVNV-TPSETRVAYID-GGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 ++ N E+RVA +D G L +I+IER R G IYK RV VLPGM AAFV++ Sbjct: 5 KTIVANTLESEESRVAVLDPSGRLLDIYIERMWERQKAGEIYKARVDNVLPGMNAAFVNL 64 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G + FL+ D+ G++++VQV K KGAR+T Sbjct: 65 GDGRNGFLYLEDLGRSP--------------------HPGEEILVQVAKTARKGKGARVT 104 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 ++LP RYLV +P VGVS+RIE E ER+RLK + E + G I+RT A+G Sbjct: 105 PKLSLPGRYLVLVPEGKDVGVSKRIEDEEERQRLKVLGREVRPQGFGIIVRTVAQGCHMD 164 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 +L SD L +W + R LY + L RVLRD D ++ + VD+ + Sbjct: 165 QLKSDVEDLMDLWDSICAAASRSPAPCLLYRDRGLLDRVLRDELDHQVAEVVVDNPEELD 224 Query: 241 ALLEFTSEYIPE-MTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + E + + ++ Y GR P+F+++ VE E++ ALERKV L SG YL+IDQ EA Sbjct: 225 LVREMVGRFFSQGKGPEVTLYRGRTPVFEVYGVEREMELALERKVWLPSGAYLVIDQAEA 284 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T +D+NTG F G ++L TI TN+EA + IARQLRLR +GGI+++DFIDM++E HR+ Sbjct: 285 LTVIDVNTGKFTGSKDLKSTILKTNLEAAEEIARQLRLRAIGGIVVVDFIDMDDESHRQI 344 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 +L + + L DR + V G ++LGLVE+TR+RTR ++ V+ CP C G G V+ + Sbjct: 345 LLETTRELLKGDRQRAKVFGVTSLGLVELTRRRTRGDLKSVMTRGCPMCGGSGLVEREDA 404 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + R + ++ + LV A+P +A + L E ++ ++ + Sbjct: 405 CAMRLKRAVRKMTGDSPPEALLVAANPQLA----RHCAEYLLAWEEEFRCRILLREDQSL 460 Query: 480 NQEQFDV 486 +F V Sbjct: 461 QWGRFKV 467 >UniRef50_C3PI06 Ribonuclease E n=3 Tax=Corynebacterium RepID=C3PI06_CORA7 Length = 1062 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 155/411 (37%), Positives = 235/411 (57%), Gaps = 17/411 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+V ++ +L E + E +GNIY GRV VLP M+AAFVDIG + L+A DI Sbjct: 368 TQVGVLEDDLLVEHFVTTETHPSQIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGDI 427 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G R + ++ G ++VQV KDP+G KGARLTT I+L R+LV++ Sbjct: 428 DWRALGIGGR------SRKVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRFLVYV 481 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG G+S+++ ER+RLK ++ GG IIRTAAE V E ++ASD L +W Sbjct: 482 PGGRSAGISRKL-PAPERKRLKGILERVIPGDGGAIIRTAAENVSEEDIASDVNRLHSLW 540 Query: 194 TKVMERKKRPQT-----RYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 + R + LY E L +V+RD + + + VD + +Y + + Sbjct: 541 EDISARAAHEKATKGAKPVTLYEEPDLLIKVVRDLFNEDFSTLVVDGKRSYNTVSAYVDS 600 Query: 249 YIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 ++ ++ Y + F + ++ ++Q+AL RKV L SGG L+ID+TEAMT +D Sbjct: 601 MAHDLADRVVRYDAREHDGEDAFSAYRIDEQLQKALGRKVWLPSGGTLVIDRTEAMTVID 660 Query: 305 INTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG F G NL++T+ N+EA + I RQ+RLR++GG+I++DFIDM +++ VL Sbjct: 661 VNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLPENQDLVLRR 720 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L++AL +DR + V+ ++LGLV+MTRKR + EC CHGRG + Sbjct: 721 LKEALGRDRTRHQVSEVTSLGLVQMTRKRVGTGLIETFSTECEACHGRGII 771 >UniRef50_A3VT88 Ribonuclease E n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VT88_9PROT Length = 1038 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 136/418 (32%), Positives = 220/418 (52%), Gaps = 2/418 (0%) Query: 73 IMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVF 132 + + E + I E++++ Q ++VQVVK+ G KGA LTT ++L RY V Sbjct: 366 LQKRYDEARRERDRLLRNYRIQEVIKRRQVMLVQVVKEERGNKGAALTTFLSLAGRYGVL 425 Query: 133 MPGA-SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLK 190 MP GVS++I ++S+R RL+K +AE G IIRTA +AE+ D YL Sbjct: 426 MPNNARGGGVSRKISNQSDRRRLRKAMAELNVPAGQGLIIRTAGAKRTKAEIKRDYDYLA 485 Query: 191 RVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYI 250 R+W + + + +Y E +L +R +RD D + I V+ Y +F + Sbjct: 486 RLWDTIRSQTLQSVAPCLIYEEASLIKRAIRDLYDKDTAEILVEGEDGYREAKDFMKMLM 545 Query: 251 PEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAF 310 P ++ Y ++P+F + VE ++ + V LKSGGYL+I QTEA+ ++D+N+G Sbjct: 546 PSHAKNVQPYREQEPLFLHYGVERQLDEMYQPVVTLKSGGYLVIQQTEALISIDVNSGKS 605 Query: 311 VGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSK 370 RN++ T TN EA +ARQ RLR+L G+I++DFIDM+ + R V ++AL Sbjct: 606 TKERNVEATALKTNSEAAVEVARQCRLRDLAGLIVVDFIDMDENRNNRTVEKKFKEALKS 665 Query: 371 DRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVR 430 DR + V S GL+EM+R+R R I CPTC G G V++VE I+R I Sbjct: 666 DRARIQVGSISTFGLLEMSRQRRRSGIVDGTTRTCPTCDGAGAVRSVEMAALRILRAIEE 725 Query: 431 VHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 + + A+ V+ + ++ L ++E G ++ V+ + N +Q+++ + Sbjct: 726 KAASDKAASVTASAALDVSLYILNQKRDWLNQIEATYGCRITVEGDSDKNGDQYELTV 783 Score = 107 bits (268), Expect = 9e-22, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 1 MTAELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT +++++ P ETRVA + G +++ E +R+ + GNIY RV+RV P +QAAF++ Sbjct: 1 MTKKMMIDARHPEETRVAVLSNGKVEDFDFESLSRKPLRGNIYLARVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G ++ FL +I + +++ Sbjct: 61 YGGNRHGFLAFGEIHSDYYQIPVADRE 87 >UniRef50_A7HQG8 Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HQG8_PARL1 Length = 506 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 188/506 (37%), Positives = 286/506 (56%), Gaps = 24/506 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREAR-----------RGIVGNIYKGRVSRV 49 M+ E+L+NV P ETRVA ++ G E+ +ER ++GNI+ GRV RV Sbjct: 1 MSEEVLINVGPGETRVAIVEDGRPVELFLERTMEDDLKAKTGRAGHSLIGNIFLGRVQRV 60 Query: 50 LPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVK 109 LPGMQAAFV++GL++A FL A + E +E T+ IS V++GQ ++VQ VK Sbjct: 61 LPGMQAAFVEVGLERAGFLGAREARCLCELTGLDEG---TLPPISACVQEGQTILVQAVK 117 Query: 110 DPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCD------ 163 DP+ KGARL+ ++T+P R LV +P S V +S+RIE E ERERL +V E + Sbjct: 118 DPISDKGARLSANVTIPGRLLVLVPNQSGVALSRRIEDEPERERLAALVEEMVERFNPMG 177 Query: 164 ---EQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVL 220 E GFI+RTAA G ++A+DA L W KV E +KR ++ +L + L Sbjct: 178 VTGEPAGFIVRTAAIGATAEDIAADARQLAEEWRKVRETEKRSTAPCVVFHDLDPVSKTL 237 Query: 221 RDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRAL 280 RD A+ R+ +D + + +PEM +++ + G +F L+DV+ EI+ AL Sbjct: 238 RDCVSADTSRVLIDCADAFGEAQRYCRRAMPEMLDRIQLFNGPGQLFSLYDVDGEIEAAL 297 Query: 281 ERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNL 340 E + EL SGG++ ++ TEA+T +D+N+G + L++T N+EA I QLRLR Sbjct: 298 EPRAELPSGGWITVETTEALTAIDVNSGRYTAATGLEETSVKINLEAVHEIVYQLRLRGT 357 Query: 341 GGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 GG+I+IDFI +N+ + ++V+ +L + +KDRV T ++G S GLVEMTRKR RE ++ + Sbjct: 358 GGLIVIDFIHLNDPANIQKVIDALNEGFAKDRVPTQISGMSEFGLVEMTRKRVREPLDKL 417 Query: 401 LCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSL 460 L HGR KT T+ +++R I R A + AS V + L+ + + Sbjct: 418 LTEP-AYPHGRPRRKTCATMANDLLRRIAREAQATPGRPLVARASVEVVDWLERGNPYLV 476 Query: 461 AEVEIFVGKQVKVQIEPLYNQEQFDV 486 + V + + EP + +E+ DV Sbjct: 477 ERLRRKVPADISLIGEPAFPRERIDV 502 >UniRef50_B6INB6 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenum SW RepID=B6INB6_RHOCS Length = 1035 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 127/404 (31%), Positives = 215/404 (53%), Gaps = 2/404 (0%) Query: 88 FTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGAS-HVGVSQRIE 146 I E++++ Q L+VQV K+ G KGA LTT ++LP RY V MP G+S++I Sbjct: 225 LKSYKIQEVIKRRQILLVQVTKEERGNKGAALTTYLSLPGRYCVLMPNTPRGGGISRKIT 284 Query: 147 SESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQT 205 + ++R+R+K+++ + I+RTA + E+ D YL R+W + E + Sbjct: 285 NPADRKRMKELLEGLDVPQGMSVILRTAGIERSKPEIKRDLEYLMRLWDSIRELTLQSVA 344 Query: 206 RYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQP 265 +Y E L +R +RD +++D + V+ Y +F +P K++ Y P Sbjct: 345 PALIYEEANLIKRSIRDLYASDIDEVIVEGEQGYRTAKDFMRMLMPSHAKKVQPYKDDIP 404 Query: 266 IFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNI 325 +F F VE I+ + V+L+SGGY++I+QTEA+ +D+N+G RN+++T TN+ Sbjct: 405 LFHRFQVEGAIETMFDPVVQLRSGGYIVINQTEALVAIDVNSGRSTKERNIEETALRTNL 464 Query: 326 EATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGL 385 EA + IARQLRLR+L G+I+IDFIDM + V L++A+ DR + + S GL Sbjct: 465 EAAEEIARQLRLRDLAGLIVIDFIDMEEARNNASVEKRLKEAMKADRARIQLGRISPFGL 524 Query: 386 VEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYAS 445 +E++R+R R S++ + CP C G G V++VE+ ++R I S V A+ Sbjct: 525 LELSRQRLRPSLQEINFERCPHCAGTGLVRSVESAALAVLRAIEEEGIRRRSAEITVTAA 584 Query: 446 PAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM 489 ++ + ++ SL +E G +V + + + + Sbjct: 585 ASLVLYILNQKRESLTAIERRYGLRVYLAADDSLTPPAHRLERL 628 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 2/102 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M +LV+ T P ETRV + G L+E+ E +R+ + GNIY +V RV P +QAAFV+ Sbjct: 1 MAKRMLVDATHPEETRVVVVSGNRLEELDFEIASRKQLKGNIYLAKVIRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQ 101 G ++ FL S+I P + +++ +R+ G Sbjct: 61 YGGNRHGFLAFSEIHPDYYRIPVADREAL-LREQEREYEAGD 101 >UniRef50_B1H0J1 Ribonuclease G n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0J1_UNCTG Length = 488 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 172/489 (35%), Positives = 275/489 (56%), Gaps = 18/489 (3%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E++VN T E+RVA +D G L + IER I+ NIYKGRV ++P + + FVDIG Sbjct: 15 KKEIIVNRTFEESRVAILDNGKLFNLFIERRESEKILNNIYKGRVKNIVPALNSLFVDIG 74 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A+L DI+ R +++ GQD+MVQV K+P+ KGA++T Sbjct: 75 FGRGAYLDVCDILKEH-------------RSKKNMIKAGQDIMVQVYKEPIHNKGAKVTM 121 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE-QGGFIIRTAAEGVGEA 180 I+L R LV+MP ++++GVS+ I+ + E RLK + AE + GG IIRT AE +A Sbjct: 122 AISLTGRLLVYMPFSNNIGVSKNIKDKHEYNRLKSMTAELKKDISGGIIIRTKAEKATKA 181 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 E+ ++ YL R+W + ER + ++ +L L + + D+ ++ +R+DS+ + Sbjct: 182 EIKNEIKYLIRLWASITERFDDAKPMSLIHKDLGLVFQTVIDYFSDDVIFMRIDSQKELK 241 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + +F +PE ++ Y R PIF + +E EI+R KV L SGGYLII + E++ Sbjct: 242 DVTDFVEIVLPEFLDRIVFYDDRTPIFKKYGIEEEIKRLCSNKVWLSSGGYLIIQEAESL 301 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+N+G F +DT TN+EA + IARQLRLRN+GGII+IDFIDM +RR+V Sbjct: 302 CAIDVNSGKFTAKSTQEDTAVITNLEAAEEIARQLRLRNIGGIIVIDFIDMKKASNRRKV 361 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L +L +A D+ K + + LGL+EMTR+R R+S+ +L + CP CHG V + E++ Sbjct: 362 LETLRKATKVDKAKIEIWPITRLGLIEMTRERKRKSLFSILGDICPVCHGLSFVLSKESI 421 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 + EI ++ R + + V E ++ A +E G + ++ Sbjct: 422 FINVCDEIKQLKIDGYDGRIKIKLNIDVIEYFMKKK----ARLEELFGVEFDIEASTELL 477 Query: 481 QEQFDVVMM 489 +E++ ++ + Sbjct: 478 REEYKILYL 486 >UniRef50_B1VGM2 Ribonuclease E n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VGM2_CORU7 Length = 1190 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 154/417 (36%), Positives = 243/417 (58%), Gaps = 17/417 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+V ++ G L E + + ++ +VGNIY GRV VL M+AAF+DIG + A L+AS++ Sbjct: 396 TQVGVVEDGQLVEHFVTSDTQQSMVGNIYLGRVQNVLASMEAAFIDIGTGRNAVLYASEV 455 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 H+ + R I + +R G +MVQV+KDP+G KGARLT I+ RYLV+ Sbjct: 456 NWHSPHL------HSKSRRIDQALRSGDQVMVQVIKDPVGHKGARLTNRISFAGRYLVYF 509 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG + G+S+++ E+ER+RLK+++ QGG IIRTAAE V E + D L + W Sbjct: 510 PGGTTAGISRKL-PEAERKRLKEILQRVVPGQGGAIIRTAAENVAEELIEEDVNRLHKQW 568 Query: 194 TKV-----MERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 + ERK + LY E + V+RD + + + V+ ++ + ++ Sbjct: 569 LNIEKTEAKERKSKGAKPVTLYEEPNMLITVIRDLFNEDFSELLVEGDKSWRMVRDYMGR 628 Query: 249 YIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 PE+ ++ + + +F +++++ +AL RKV L SGG+L+ID TEAMT +D Sbjct: 629 MAPELMDRVHKWHPEQHADEDVFAAHRLDDQLAKALCRKVWLPSGGHLVIDHTEAMTVID 688 Query: 305 INTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG+FVG NL++T+ N+EA + I RQ+RLR++GG+I++DFIDM E+++ VL Sbjct: 689 VNTGSFVGSGGNLEETVTENNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLEENQDLVLRR 748 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L + L +DR V+ ++LGLV++TRKR + C C GRG + + V Sbjct: 749 LIEYLGRDRTHHKVSEVTSLGLVQITRKRLGAGLLETFSTTCECCDGRGVIVHPDPV 805 >UniRef50_D2LHL1 Ribonuclease, Rne/Rng family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LHL1_RHOVA Length = 1049 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 133/409 (32%), Positives = 223/409 (54%), Gaps = 2/409 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E + ++++ I E++++ Q +++QVVK+ G+KGA LTT ++L RY V MP A Sbjct: 314 EELPQRHKRRWRHYKIQEVIKRNQIVLIQVVKEERGSKGAALTTYLSLAGRYTVLMPNTA 373 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 S G+S++I ++R+RLK++ E E G IIRTA +AE+ D YL R+W Sbjct: 374 SGGGISRKITVPADRKRLKEIAQELDVPEGMGLIIRTAGASRTKAEIKRDFEYLLRLWEN 433 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V + + +Y E L +R +RD + ++D I V + EF +P Sbjct: 434 VRDLTLKSTAPCLVYEEGDLIKRSIRDLYNKDIDEILVAGDEAHHEAREFMRMLMPSHAK 493 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 + Y +PIF ++VE ++ + V LKSGGY++++QTEA+ +D+N+G + Sbjct: 494 NVLLYKEPEPIFTKYEVERQLNQMFSPVVTLKSGGYIVLNQTEALVAIDVNSGRSTREYS 553 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA + +ARQ+RLR+L G+I+IDFIDM+ + R V L+++L DR + Sbjct: 554 IEDTALKTNMEAAEEVARQVRLRDLAGLIVIDFIDMDERRNNRSVERKLKESLRHDRARI 613 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R+ + V CP C G G ++++E+V I+R I Sbjct: 614 QVGHISHFGLMEMSRQRLRQGVVEVSTVPCPVCQGVGHIRSIESVALMILRSIEDHLRTQ 673 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQF 484 + + AS A + + L ++E+ G + +Q + + F Sbjct: 674 GAANITLTASTEAALYILNNKRSYLRDIELRYGVTIVLQPDDKAHGAHF 722 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 1/96 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV G ++E E +R+ + GNIY +V+R+ P +QAAFV+ Sbjct: 1 MANKMLIDATHPEETRVVVTRGNRVEEFDYESASRKQLRGNIYLAKVARIEPSLQAAFVN 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISE 95 G ++ FL ++I P + ++Q + ++ Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVAVREQLMKEEAAD 96 >UniRef50_A8MHL2 Ribonuclease, Rne/Rng family n=2 Tax=Alkaliphilus RepID=A8MHL2_ALKOO Length = 501 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 191/487 (39%), Positives = 291/487 (59%), Gaps = 3/487 (0%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +++V+V SE R+A ++ L E++IER + IVGNIYKGRV VLPGMQAAFVDIGL Sbjct: 2 NQIIVDVGISENRLAILEDEELVELYIERRNNKRIVGNIYKGRVVNVLPGMQAAFVDIGL 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K FL+ D + + + I ++V+QGQ+++VQV+K+P+ KGAR+TT+ Sbjct: 62 EKNCFLYVKDALGQEYFNKKDFVDREI--SIKDVVKQGQEIIVQVIKEPIADKGARVTTN 119 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 ITLP RYLV MP ++GVS++I S ERERLK + E G I+RT AEG + + Sbjct: 120 ITLPGRYLVLMPDTQYIGVSRKIGSAEERERLKAEIEALKPENMGVILRTVAEGKSKDDF 179 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D +L ++W K+ + KK +Y + L + +RD + ++ Y++ Sbjct: 180 REDIKFLLKLWQKIEKEKKLGFAPRLIYKDFDLIDKTIRDTFSKNIHEFIINDENEYKSA 239 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 ++ P + +L ++ IF + +E++I +ALERK+ LKSGGY++ID TEA+T Sbjct: 240 MDLVELLSPNLKDRLSYFEESHDIFRHYKIESQIHKALERKIWLKSGGYIVIDSTEALTV 299 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 VD+NTG +VG +L+DT+ TN+EA IA+QLRLR++GGIIIIDFIDM+NE+ ++VL+ Sbjct: 300 VDVNTGKYVGITDLEDTVLKTNLEAAVEIAKQLRLRDIGGIIIIDFIDMSNEEDEQKVLN 359 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 LE++L+KDR K+ + G + LGLVEMTRK+ R+ +E V+ +C C G G + T+ Sbjct: 360 LLEKSLNKDRTKSKILGMTELGLVEMTRKKVRQKLESVMQKKCHCCDGSGKLLNEYTLLQ 419 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 +E+ R+ + + P A + EE + E+E Q + P N + Sbjct: 420 RFEKEMRRIALHTSCEAVIFEVHPT-AFKIFEEEFITRKEIEGLTKVQSFIVPNPSLNFD 478 Query: 483 QFDVVMM 489 M Sbjct: 479 DLKTKAM 485 >UniRef50_A8IFL2 Ribonuclease E and G n=6 Tax=Rhizobiales RepID=A8IFL2_AZOC5 Length = 1093 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 137/408 (33%), Positives = 210/408 (51%), Gaps = 2/408 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E Q++ I E++R+ Q ++VQVVK+ G KGA LTT ++L RY V MP A Sbjct: 365 EVPERAPQRRARTYKIQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTA 424 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I + +R+RLK+VV E E G I+RTA + E+ D YL R+W Sbjct: 425 RGGGISRKITNAVDRKRLKEVVQELEVPEGMGIILRTAGANRTKVEIKRDFEYLLRLWET 484 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V E +Y E +L +R +RD E+D I V ++ +F +P Sbjct: 485 VRELTLTSSAPNLVYEEGSLIKRAIRDLYSKEIDEIHVAGEEGFQEARDFMRMLMPSHAK 544 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 + Y QPIF + VE+++ V+LKSGGY++I+ TEA+ ++D+N+G + Sbjct: 545 NVIAYREPQPIFAKYGVEHQLDAMFSPVVQLKSGGYIVINPTEALVSIDVNSGRATREHH 604 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA + IARQLRLR+L G+I+IDFIDM + + R V L+ L DR + Sbjct: 605 IEDTALKTNMEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRSVERKLKDCLKNDRARI 664 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R + CP C G G V++ +V +++R + Sbjct: 665 QVGRISHFGLMEMSRQRIRTGVLESSIEVCPVCGGTGHVRSAASVALQLLRALEEQLLRS 724 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 S + VA + + L E+E + VQ + Q Sbjct: 725 ASHNLIARTRGEVALYVLNHKRAHLRELEDRFSVTLIVQADESVTGHQ 772 Score = 87.9 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV + G ++E E +R+ + GNIY +V+RV P +QAAF++ Sbjct: 1 MANKMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G ++ FL S+I P + +++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQ 87 >UniRef50_Q2IVP9 RNAse E n=3 Tax=Bradyrhizobiaceae RepID=Q2IVP9_RHOP2 Length = 1060 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 138/415 (33%), Positives = 226/415 (54%), Gaps = 5/415 (1%) Query: 71 SDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYL 130 D++ A ++Q+ I E++++ Q ++VQVVK+ G KGA LTT ++L RY Sbjct: 315 DDVLEEVPERAFRPRRQY---KIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYA 371 Query: 131 VFMPG-ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAY 188 V MP A G+S++I S +R RLK+VV + E G I+RTA + E+ D Y Sbjct: 372 VLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEY 431 Query: 189 LKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 L R+W V + + Q +Y E +L +R LRD + E+D I+V Y+ +F Sbjct: 432 LIRMWETVRDVTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMHM 491 Query: 249 YIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTG 308 +P ++ Y QP+F VE+++ V+L+SGGY++I+QTEA+ ++D+N+G Sbjct: 492 LMPSNVRAVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSG 551 Query: 309 AFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQAL 368 +++DT TN+EA++ +ARQLRLR+L G+I+IDFIDM+ + + R V L L Sbjct: 552 RSTREHHIEDTALKTNLEASEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCL 611 Query: 369 SKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +DR + V S GL+EM+R+R R S+ CP C G G V++V +V +++R + Sbjct: 612 RQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGL 671 Query: 429 VRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 + + +V VA + ++ L ++E + V +P +Q Sbjct: 672 EEILMKGATHNLIVRTRADVALYVLNQKRGHLRDLETGFRVTLSVVSDPTVTGQQ 726 Score = 88.7 bits (219), Expect = 5e-16, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV + G ++E E R+ + GNIY +V+RV P +QAAF++ Sbjct: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G ++ FL S+I P + +++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQ 87 >UniRef50_B0TWF6 Ribonuclease G n=17 Tax=Francisella RepID=B0TWF6_FRAP2 Length = 509 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 216/495 (43%), Positives = 331/495 (66%), Gaps = 8/495 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E+ +N+ E R+A + IL+EI IER+ ++ IVGNIYKG++ RVLPGMQAAFVDIG Sbjct: 15 NTEIFLNINKYEQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIG 74 Query: 62 LDKAAFLHASDIMP----HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGA 117 L+KA FLH S+++P E + + DI++ +R+GQ+++VQVVK+ +G KG Sbjct: 75 LEKAGFLHLSEVIPLERDDEESDENFKLNKLNTEDINKWLREGQEVLVQVVKESIGNKGV 134 Query: 118 RLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG--GFIIRTAAE 175 +LT+ +++ SR+LVF+P H+G+S +I E E++RL + + + G+I+RTAAE Sbjct: 135 KLTSHLSVSSRFLVFLPDLDHIGISLKISKEEEKQRLLDSIKKITQSENPRGYILRTAAE 194 Query: 176 GVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDS 235 G EL +D +L +W +++ +Y + +L + + FA+ D+I VD Sbjct: 195 GASYEELENDIKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNPDKIHVDD 254 Query: 236 RLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIID 295 +Y+ + +F +YIP + K+E Y + IF+ +D++ EI +AL++ V LKSGGYL+I+ Sbjct: 255 IDSYKEICQFADKYIPGLRDKIELYQ-KHNIFEEYDIDVEINKALDKTVYLKSGGYLVIE 313 Query: 296 QTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 QTEAM T+DINTG F+G +NL++TIF TN+EAT+ IARQLRLRNLGGIIIIDFIDM +E Sbjct: 314 QTEAMITIDINTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDES 373 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 H+ +VL +L++ L D+ KTSV+ S LGLVEMTRKR ES+ LC C C+G+G+VK Sbjct: 374 HKNQVLEALKKELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCNGKGSVK 433 Query: 416 TVETVCYEIMREIVRVHHAYDS-DRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ 474 T++T+CY+I REI Y + + FL+ +S + + ++ EES LAE+E+ + K + ++ Sbjct: 434 TLQTICYDIFREIKSESKNYPNYNNFLLMSSKKIIDYIEREESIWLAELELEIDKNIYLK 493 Query: 475 IEPLYNQEQFDVVMM 489 E + Q+D++ + Sbjct: 494 AESNHIYNQYDIIPL 508 >UniRef50_Q3J4J9 RNAse E n=6 Tax=Rhodobacteraceae RepID=Q3J4J9_RHOS4 Length = 936 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 126/412 (30%), Positives = 215/412 (52%), Gaps = 2/412 (0%) Query: 77 TECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG- 135 E + + + I E+++ Q ++VQVVK+ G KGA LTT ++L RY V MP Sbjct: 195 AEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNT 254 Query: 136 ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194 A G+S++I ++R++LK++ +E E G IIRTA + E+ D YL R+W Sbjct: 255 ARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRRDYEYLLRLWE 314 Query: 195 KVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMT 254 ++ + + +Y E L +R +RD + E++ + V+ Y +F +P Sbjct: 315 QIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYRTAKDFMRMIMPAHA 374 Query: 255 SKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR 314 ++ Y P+F + VE+ + V+LKSGGY++I TEA+ +D+N+G Sbjct: 375 RQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAIDVNSGRATKEG 434 Query: 315 NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVK 374 ++++T TN+EA + +ARQLRLR+L G+I+IDFIDM + V L+ L DR + Sbjct: 435 SIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKRLKDKLKTDRAR 494 Query: 375 TSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHA 434 V S GL+EM+R+R R + C CHG G +++ +++ +++R++ Sbjct: 495 IQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQVLRQLEEEGTR 554 Query: 435 YDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 S L+ A AV L + +A +E G V+V+ +P + + + Sbjct: 555 KRSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRVEADPSLSSPDYVI 606 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 1/103 (0%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV +DG ++E E +R + GNIY +V+RV P +QAAFVD Sbjct: 1 MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD 102 G ++ FL ++I P + ++K + + + + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDE 103 >UniRef50_Q0BVH1 Ribonuclease E n=2 Tax=Acetobacteraceae RepID=Q0BVH1_GRABC Length = 949 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 138/433 (31%), Positives = 218/433 (50%), Gaps = 7/433 (1%) Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G D+ AS E + I E++++ Q L++QVVK+ G KGA L+ Sbjct: 222 GDDQEESRQASRPARQKEDRERRSPRFLRNYKIQEVIKRRQILLIQVVKEERGNKGAALS 281 Query: 121 TDITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 T I+L RY V MP + GVS++I S ++R RLK ++ G I+RTA Sbjct: 282 TYISLAGRYCVLMPNSPRGGGVSRKITSATDRRRLKDIIGALEIPRGMGIIVRTAGGNRP 341 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 +AE+ D YL R+W + + R ++ E +L +R +RD + ++ + VD Sbjct: 342 KAEIMRDCEYLLRLWDDIRDITLRSSAPALIHEEASLIKRAIRDVYTSTIEEVLVDGEEG 401 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGR-----QPIFDLFDVENEIQRALERKVELKSGGYLI 293 + A + +P K+ + QP+F + VE+++ L V LKSGGYL+ Sbjct: 402 WRAARDIMRMLMPSHARKVICWNADKERAGQPLFAHYQVESQLDAILAPNVSLKSGGYLV 461 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 I+Q EA+ +D+N+G R +++T TN+EA +ARQLRLR+L G+I+IDFIDM + Sbjct: 462 INQAEALVAIDVNSGRSTKERGIEETALRTNLEAADEVARQLRLRDLAGLIVIDFIDMES 521 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGT 413 H V L++AL DR + V S+ GL+EM+R+R R S+ CP C+G G Sbjct: 522 RKHNGMVERRLKEALKNDRARIQVGQISSFGLLEMSRQRLRPSLTETSMITCPHCNGLGL 581 Query: 414 VKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKV 473 V+T E ++R I +V+A+ VA + LA +E G +V Sbjct: 582 VRTTEGASVHVLRAIEEEGARRRYAEIMVHAAADVAFYILNNRRDFLATLESRFGMKVLF 641 Query: 474 QIEPLYNQEQFDV 486 + ++ Q + Sbjct: 642 SADTQFSGSQLRI 654 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT ++L++ + ETRV +DG L++ +E +R+ I GNIY +V RV P +QAAFV+ Sbjct: 49 MTKKMLIDASHAEETRVVVMDGNRLEDFDVEAASRKQIKGNIYLAKVVRVEPSLQAAFVE 108 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQF 88 G ++ FL S+I P + ++++ Sbjct: 109 YGGNRHGFLAFSEIHPDYYQIPVADRQRL 137 >UniRef50_Q1IRN1 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRN1_ACIBL Length = 1031 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 172/406 (42%), Positives = 265/406 (65%), Gaps = 2/406 (0%) Query: 83 EEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVS 142 + + IS+L+++GQ+++VQ+ K+P+G KGAR+T+ I LP R+LV+MP +HVGVS Sbjct: 625 KNMQSRNTPLISDLLKEGQEILVQIAKEPIGKKGARITSHIALPGRFLVYMPTVNHVGVS 684 Query: 143 QRIESESERERLKKVVA-EYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKK 201 ++I S+ ER+RLK++V+ E + GGFI+RTAA V E EL +D +LK +W+++ R Sbjct: 685 RKIASDEERQRLKRIVSSERENGHGGFIVRTAAANVKEDELRADIRFLKHLWSEIKGRSD 744 Query: 202 RPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYT 261 + ++ +Y +L L +RVLRD ++ I VD+ YE +L F S + P + +++ YT Sbjct: 745 KSKSPALIYHDLNLVERVLRDQVTSDFTTIWVDNESEYERVLRFASRFQPSLVRRIKLYT 804 Query: 262 GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR-NLDDTI 320 P+F+ F ++ EI +AL+ KV LKSGGY++I+QTEA+ +DINTG +VG L+DTI Sbjct: 805 KNTPLFEEFGIQEEINKALKAKVWLKSGGYIVINQTEALVAIDINTGKYVGKTTRLEDTI 864 Query: 321 FNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGF 380 TN++A + I RQ+RLR+LGGII+IDFIDM+ +R++V+ +LE+AL DR + V F Sbjct: 865 VKTNVDAIKEIVRQIRLRDLGGIIVIDFIDMDERKNRQKVMAALEEALKSDRAPSKVLQF 924 Query: 381 SALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRF 440 + GLV +TRKR ++S+E L C C G VK+V T+C EI E+ ++ D Sbjct: 925 NDFGLVAITRKRVKQSLERTLGTPCSYCEATGFVKSVPTMCSEIYTEVRKLAKHLDGKDV 984 Query: 441 LVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + +P VA+A+K + E E GK V V+ +P +QE FD+ Sbjct: 985 TIRVNPEVAKAIKENNGKLVQEFEELTGKTVIVKSDPAMHQEHFDI 1030 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 42/99 (42%), Positives = 60/99 (60%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M EL V+ P ETRVA ++ L EI ERE + G+IYKGRV+RVLPGMQ+AFVD+ Sbjct: 1 MNKELYVSSNPHETRVALVEDDQLAEIFYERENEYTLAGSIYKGRVTRVLPGMQSAFVDV 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQ 99 GL++ AFL+ SD + + + + ++ R+ Sbjct: 61 GLERDAFLYVSDFLDLQDEEDEDFEVAVKTNGTADNTRE 99 >UniRef50_Q0AWI9 RNAse G n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWI9_SYNWW Length = 476 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 161/486 (33%), Positives = 284/486 (58%), Gaps = 15/486 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E++ V P E+RVA ++ G L E+ + VG IYKG++ +LPG+ F+DI Sbjct: 1 MIKEIIAEVYPWESRVAIVEDGRLAEVFWADQGEN--VGKIYKGKIKDILPGLSCVFIDI 58 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL + AFL+A D++ + ++ EL++ GQD+MVQV K+ KGAR+T Sbjct: 59 GLARNAFLYAGDVVR---------VGKKKGLNVYELLKSGQDIMVQVKKEAFSEKGARVT 109 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 D+++P R LV +P + V +S++I + R+ L+ ++ E E GG I+RTA + Sbjct: 110 GDLSIPGRLLVLLPFQNEVSISRKITGDERRKHLRSLLEESKPENGGIIVRTACLEAEDQ 169 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 E+ + L + W ++ +R + + +Y ++ + +R +RD+ D L RI +++R + Sbjct: 170 EIIQELNRLLKTWEEIKQRYQNRKAPSLIYEDMDVLERTMRDYLDGNLSRIVINNRRLKD 229 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +L++ S + ++++ G +F+ +++E +I+R+L RK+ LK+GGYLI D+TEAM Sbjct: 230 KILDYISGKKIFNSLRVDYEEGA--LFEKYNLEKDIKRSLRRKIWLKNGGYLIFDRTEAM 287 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+N+G F G N ++T+F N+EA I RQLRLR+LGGII+IDFIDM + ++ + Sbjct: 288 TVIDVNSGKFTGKDNFEETVFKINMEAAIEIPRQLRLRSLGGIILIDFIDMKEKSNQDEL 347 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 + L+ L KD+ T + G + LG +EMTRK++R + +EC C GRG + ++ + Sbjct: 348 IKVLKTGLEKDKANTRIIGITGLGFLEMTRKKSRYGVVEFFTDECSNCSGRGHIINLQAL 407 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 E R++ + + ++++ + A P + + LK +E + +E GK V + +P Sbjct: 408 ASEAKRKMAHMGY-LENNQIICKAEPRLLKILKDDEKD-IGYIERRSGKSVLLLSDPDLA 465 Query: 481 QEQFDV 486 ++ + Sbjct: 466 PGEYKI 471 >UniRef50_Q92QJ4 Probable ribonuclease E n=1 Tax=Sinorhizobium meliloti RepID=Q92QJ4_RHIME Length = 924 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 130/404 (32%), Positives = 212/404 (52%), Gaps = 2/404 (0%) Query: 85 QKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQ 143 +K I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A G+S+ Sbjct: 235 RKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISR 294 Query: 144 RIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKR 202 +I + +R+RLK++ + G I+RTA + E+ D YL R+W V Sbjct: 295 KITNLQDRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLN 354 Query: 203 PQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTG 262 +Y E +L +R +RD + ++ I V Y+ F +P ++ Y Sbjct: 355 STAPCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAKVVQPYRD 414 Query: 263 RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFN 322 PIF +E ++ R L+ +V LKSGGY+II+QTEA+ ++D+N+G +++DT Sbjct: 415 VHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQ 474 Query: 323 TNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSA 382 TN+EA + +ARQLRLR+L G+I+IDFIDM + + R V L+ L DR + V S Sbjct: 475 TNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISH 534 Query: 383 LGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLV 442 GL+EM+R+R R S+ CP C+G G +++ +V ++R I + V Sbjct: 535 FGLLEMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISV 594 Query: 443 YASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 +P +A L ++ S+ + E G + ++ + + F + Sbjct: 595 RTTPDIALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAI 638 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + ETRV + G ++E E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD 102 G ++ FL ++I P + +++ + E R + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDE 103 >UniRef50_C1F7B7 Ribonuclease, Rne/Rng family, insertion n=2 Tax=Bacteria RepID=C1F7B7_ACIC5 Length = 1013 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 172/396 (43%), Positives = 257/396 (64%), Gaps = 2/396 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERE 152 IS+L++QGQ+++VQ+ K+P+ KGAR+T+ I LP R+LVFMP +HVGVS++I S+ ER+ Sbjct: 617 ISDLLKQGQEILVQIAKEPIAKKGARITSHIALPGRFLVFMPTVNHVGVSRKISSDEERQ 676 Query: 153 RLKKVV-AEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYG 211 RLK+++ +E D GGFI+RTAAEG GE EL +D +L +W ++ ER + +Y Sbjct: 677 RLKRILISEKGDATGGFIVRTAAEGAGEDELRADIRFLINLWNEIKERSDSGKAPALIYH 736 Query: 212 ELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFD 271 +L L +R+LRD E I VDS YE ++ F + + P + +++ YT P+F+ F Sbjct: 737 DLNLVERILRDQVSEEFSTIWVDSETDYERIVRFLNRFQPSLVRRVKLYTKEMPLFEQFG 796 Query: 272 VENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR-NLDDTIFNTNIEATQA 330 +++EI +AL+ KV LKSGG ++I+QTEA+ +DINTG +VG L+DTI TN++A Sbjct: 797 IQDEITKALKSKVWLKSGGSIVINQTEALVAIDINTGKYVGKTARLEDTIVKTNLDAIPE 856 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 I RQ+RLR+LGGII+IDFIDM+ +R +VL +LE+ L DR + V F+ GLV +TR Sbjct: 857 IVRQIRLRDLGGIIVIDFIDMDERKNRHKVLQALEEELKHDRAPSKVLQFNDFGLVAITR 916 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE 450 KR ++S+E L C C G G VK+ TV EI E+ ++ ++ L+ +P V + Sbjct: 917 KRVKQSLERTLSIPCNICTGTGMVKSPATVANEIYVEMRKMQRHLENKDVLLRVNPEVVK 976 Query: 451 ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 LK L E+E GK + V+ +P + EQFD+ Sbjct: 977 TLKASGGRWLNELEEMTGKTIIVKSDPTLHPEQFDI 1012 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 41/85 (48%), Positives = 58/85 (68%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E+ ++ TP ETR+A ++ L EI+ ERE + G+IYKGRV+RVLPGMQ+AFVDI Sbjct: 1 MAKEICISSTPHETRLAILEDDQLAEIYYERENEYTLAGSIYKGRVTRVLPGMQSAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQ 85 GL++ AFL+ +D + E E+ Sbjct: 61 GLERDAFLYVTDFLEEQEDSDEYER 85 >UniRef50_C9RQU1 Ribonuclease, Rne/Rng family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQU1_FIBSS Length = 511 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 166/494 (33%), Positives = 267/494 (54%), Gaps = 10/494 (2%) Query: 1 MTAE----LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAA 56 M + +L++ TP E R+A ++ G L E+ +E + ++GNIYKG V +VLP ++AA Sbjct: 1 MANKCKRGILISKTPYEKRIAIMEDGELAELVVEGVSSNRVLGNIYKGVVQKVLPALKAA 60 Query: 57 FVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVR------DISELVRQGQDLMVQVVKD 110 F+DIGL+KA FLH D M E + E I E++++GQ++MVQVVK+ Sbjct: 61 FIDIGLEKAGFLHQEDAMDRNELLRREYGDDDDEGDASKEISIDEILQEGQEIMVQVVKE 120 Query: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFII 170 P+ TKGARLTT ++ R+LV MPGA+ VGVS+R +R KKVV G+I+ Sbjct: 121 PISTKGARLTTHLSFAGRFLVCMPGANFVGVSKRERDPVKRREFKKVVRRLKGRDVGYIV 180 Query: 171 RTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDR 230 RT E E+ L+ W + + +Y E ++ +R++ D Sbjct: 181 RTNGLNESEFEINKQMRELESKWEQTKYNFETMPPETCIYEESDSIEQTVREYFGDNTDY 240 Query: 231 IRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGG 290 + +D+R Y AL ++ P+ K++ ++ + +F+ F +EN+ R+L+R+V L GG Sbjct: 241 VYIDNRDEYFALRDYLKVLSPDKLDKVKLWSSSESLFEYFKIENDYARSLQRQVPLPRGG 300 Query: 291 YLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFID 350 L+I+QTEA+ ++D+NTG V ++ I TN++A IA+QLRLR++GG+IIIDFID Sbjct: 301 NLVIEQTEALVSIDVNTGPKVHGKDQGKIILETNLDACHEIAKQLRLRDVGGLIIIDFID 360 Query: 351 MNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHG 410 M ++ R V +A+ +D+ S S GL+E+TRKR R ++ CP C+G Sbjct: 361 METDEDREAVYQEFRKAIRRDKAPISPAPISQFGLMEVTRKRVRVNLMTEKTECCPVCNG 420 Query: 411 RGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQ 470 G + T+E+ I R + R H + S V + L + + +E + Sbjct: 421 SGRIATLESTLGMIDRWLARAHTKGRLREVTLVVSAPVIDVLCKDLNRMFNYLEYKHNIK 480 Query: 471 VKVQIEPLYNQEQF 484 + + + + QF Sbjct: 481 ISLVEDEYAHINQF 494 >UniRef50_B8DVT8 Ribonuclease G n=7 Tax=Bifidobacterium RepID=B8DVT8_BIFA0 Length = 1028 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 157/422 (37%), Positives = 253/422 (59%), Gaps = 15/422 (3%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 ++V T+++ I+ +L E ++ VGNIY GRV VLP M+AAFVDIG + Sbjct: 480 MVVRERGRHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQAR 539 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 L+A ++ + G+ R I + G ++VQV KDP+G KGARLT+ +T Sbjct: 540 NGVLYAGEVNWDATRLEGQP------RRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVT 593 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 L R+LV +P GVS+++ S+ ER RLK +V++ + G IIRTAAEG E +A Sbjct: 594 LAGRFLVLVPSGGMTGVSRKL-SDRERNRLKSIVSKIAPKDMGVIIRTAAEGASEEAIAK 652 Query: 185 DAAYLKRVWTKVMERKK---RPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 D L W ++ +++ + L GE +A RV+RD + + +++ V+ Y Sbjct: 653 DLEGLTNQWAEIQRKREEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVYHR 712 Query: 242 LLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 + E+ P++ +KLE + G + +FD + +++++++ +ER+V L SGG ++ID+T Sbjct: 713 IEEYLDHMAPDLHNKLERWDPEEHGGKDVFDRWQIDSQLRKGMERQVYLPSGGSIVIDRT 772 Query: 298 EAMTTVDINTGAFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 EAMTT+D+NTG F+G ++L++T+ N+EA++ IARQLRLR++GG+++ID++DM + Sbjct: 773 EAMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPAN 832 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 R VL L + L++DR K V ++LGLV+MTRKR + + ECP C GRG + Sbjct: 833 RDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPECKGRGFIVH 892 Query: 417 VE 418 E Sbjct: 893 DE 894 >UniRef50_C6QC83 Ribonuclease, Rne/Rng family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QC83_9RHIZ Length = 1025 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 134/443 (30%), Positives = 221/443 (49%), Gaps = 2/443 (0%) Query: 46 VSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMV 105 V G Q A D G + E ++++ I E++++ Q ++V Sbjct: 249 VEDDYAGHQDALNDNGSVEHEHHDEGSQPEFREGPRSRQRRRPRSYKIQEVIKRRQIILV 308 Query: 106 QVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESERERLKKVVAEY-CD 163 QVVK+ G KGA LTT ++L RY V MP A G+S++I + +R RLK + E Sbjct: 309 QVVKEERGNKGAALTTYLSLAGRYTVLMPNTARGGGISRKITNPQDRRRLKSIAQELEVP 368 Query: 164 EQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDF 223 E G IIRTA + E+ D YL R+W V + + +Y E L +R +RD Sbjct: 369 EGMGLIIRTAGAARTKQEIKRDFEYLLRLWESVRDLTLQSTAPSLVYEEGDLIKRSIRDL 428 Query: 224 ADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERK 283 + +++ I V ++ +F +P + Y P+F + VE ++ + + Sbjct: 429 YNKDVEEIVVAGDAGHQEAADFMKMLMPSHAKNVVAYREPTPLFTRYGVERQLNAMFQPQ 488 Query: 284 VELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGI 343 V L+SGGY++I+QTEA+ +D+N+G ++++T TN+EA IARQL+LR+L G+ Sbjct: 489 VTLRSGGYIVINQTEALVAIDVNSGKSTREFSIEETALATNLEAADEIARQLKLRDLAGL 548 Query: 344 IIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 I+IDFIDM + + R V L+ AL DR + + S GL+EM+R+R R + + Sbjct: 549 IVIDFIDMEEKRNNRAVERRLKDALRFDRARIQLGRISHFGLMEMSRQRLRTGVLEGSTS 608 Query: 404 ECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEV 463 +C C G G +++ E++ ++R I A + + + AVA + + +A++ Sbjct: 609 QCAHCQGTGIIRSTESIALAVLRGIEDAITAGANGPLVATTTSAVALYILNSKRAYVADM 668 Query: 464 EIFVGKQVKVQIEPLYNQEQFDV 486 E+ G V V F V Sbjct: 669 EVRHGYSVTVLGSDRVQGANFTV 691 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 2/88 (2%) Query: 1 MTA-ELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFV 58 M+ ++L++ T P ETRV G ++E E AR+ + GNIY +V+RV P +QAAFV Sbjct: 1 MSNTKMLIDATHPEETRVVVQRNGRVEEFDFESAARKLLRGNIYLAKVTRVEPSLQAAFV 60 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQK 86 D G ++ FL +++ P + +++ Sbjct: 61 DYGGNRHGFLAFNEVHPDYYQIPVADRQ 88 >UniRef50_C0WDS2 Ribonuclease n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDS2_9FIRM Length = 468 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 163/484 (33%), Positives = 259/484 (53%), Gaps = 26/484 (5%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 + V+V P ETR+ + L++ +ER +VGNIY+GRVS V+PG+QAAF+D+ + K Sbjct: 4 IFVSVKPEETRMGLVFDSKLRDFAVERRGEGNLVGNIYRGRVSNVVPGIQAAFIDLNVGK 63 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 FL + + +GQ L+VQVVKD GTKG +T ++T Sbjct: 64 NGFLTLHK---------------------QDRLTEGQMLLVQVVKDCRGTKGPGVTRNVT 102 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 LP RY+V P + + +S++I +S R RL+ +V + E G +IRTAA E+ + Sbjct: 103 LPGRYIVLEPFGNRISLSRKITCKSLRTRLRTLVQKSLPEGMGVVIRTAAAKAAAEEIEN 162 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 D L W ++ R K + LY EL L+ R++RD+ ++ +I VD TY + E Sbjct: 163 DLRQLLASWQVLLRRSKVGRGPQLLYRELDLSIRMIRDYVTKDVQKIIVDDEATYHTVEE 222 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 + + + E Y ++ +F + + EI +R V L GG L+ D TEAMT +D Sbjct: 223 LLQD-MGLTEIRTEWYQEKEDLFTHYGLNEEIASISDRVVPLPGGGSLVFDYTEAMTVID 281 Query: 305 INTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSL 364 +N+G + + ++T TN EA IARQLRLR++GGII+ DFIDM ++ + +L L Sbjct: 282 VNSGHYSTGSDREETSLATNREAALEIARQLRLRDIGGIIVADFIDMERKEEQEEILDLL 341 Query: 365 EQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEI 424 + + DR+K V G +AL LVEMTR + R ++ + CP C G G V++ ETV EI Sbjct: 342 RREFAMDRMKPRVMGMTALNLVEMTRMKARRNLFGTVYTTCPMCQGSGRVESPETVYVEI 401 Query: 425 MREIVRVHHAYDSDR-FLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 R + ++ + R ++ P V E ++ H + ++E G ++++ P Sbjct: 402 RRRLRSLYLDHAMARSLVLSVHPLVEEWIR---IHGMKDMEQEFGAKIRLVSNPSLAVGV 458 Query: 484 FDVV 487 F ++ Sbjct: 459 FTLL 462 >UniRef50_A1AW88 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteobacteria RepID=A1AW88_RUTMC Length = 584 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 143/489 (29%), Positives = 260/489 (53%), Gaps = 9/489 (1%) Query: 3 AELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N E RV + L ++IE + GNIY G++SRV ++AAFVD G Sbjct: 2 NHILINAIYSEEIRVGIVKNKKLTGLNIETSLNKKTKGNIYHGKISRVEQSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 +K FL ++ E + + + + IS+++++GQ+++VQ+ K+ G KGA L+T Sbjct: 62 KEKQGFLPFKEV---AETLHNDVKAKGEKLTISDVLKEGQEIIVQIEKEERGNKGAALST 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I L Y++ MP G+S++I + +R+ LK+++++ G IIRTA G Sbjct: 119 YINLAGAYMILMPNNPKNHGISRQIVAL-DRQSLKEIISKIILPNHSGLIIRTAGSGKSF 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL + YL +W + + +Y E + R LRD ++ D + +D + Sbjct: 178 EELQWEVDYLSDLWKSINTATLTRSAPFLIYQESDIIIRTLRDHLRSDTDSVIIDELEAF 237 Query: 240 EALLEFTSEYIPEMTSKLEHYT-GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + EF S +P +++ + +F+ +E +++ R+V L++G ++ D TE Sbjct: 238 QNAKEFVSFVLPHYLDRIKFFDVSEHSLFNHMGIEAQVKSVFNREVSLRTGAIIVFDPTE 297 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +DIN+ ++++T +NTN+EAT+ IA QL+LR++GG+++IDFIDM +E+HR Sbjct: 298 ALTAIDINSARATKGADIEETAYNTNLEATKEIALQLQLRDIGGLVVIDFIDMASEEHRV 357 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 + ++E+A + DR + + S GL+EM+R+R S+ + C CHGRGT T+ Sbjct: 358 SIEKAMEKATNADRARIQIGTISQFGLLEMSRQRLMNSVTESVEKPCSACHGRGTTPTIP 417 Query: 419 TVCYEIMREIVR-VHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 T+ I+R++ + A + + +S V + E+ + ++E G ++ + P Sbjct: 418 TLALTILRQLEDGCNAAKQTAHLTIQSSIEVITYILNEKRQEIIKLEGKHGIKITLLPNP 477 Query: 478 LYNQEQFDV 486 F + Sbjct: 478 YMQFPNFTI 486 >UniRef50_Q7CZH1 Ribonuclease E n=7 Tax=Alphaproteobacteria RepID=Q7CZH1_AGRT5 Length = 977 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 127/404 (31%), Positives = 206/404 (50%), Gaps = 2/404 (0%) Query: 85 QKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQ 143 +K I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A G+S+ Sbjct: 261 RKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISR 320 Query: 144 RIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKR 202 +I ++R+RLK++ + + G I+RTA E+ D YL R+W V Sbjct: 321 KITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLN 380 Query: 203 PQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTG 262 +Y E +L +R +RD + ++ I V Y +F +P ++ Y Sbjct: 381 STAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAKVVQPYRD 440 Query: 263 RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFN 322 PIF +E ++ R L+ +V LKSGGYLII+QTEA+ +D+N+G ++++T Sbjct: 441 IHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALT 500 Query: 323 TNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSA 382 TN+EA + +ARQLRLR+L G+++IDFIDM + + R V L+ L DR + V S Sbjct: 501 TNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISH 560 Query: 383 LGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLV 442 GL+EM+R+R R S+ C C G G V++ ++ ++R + + V Sbjct: 561 FGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITV 620 Query: 443 YASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 +P A L + S+ + E G + + + + F + Sbjct: 621 RCTPETALYLLNHKRGSIVDYEGRFGVAIIIAADSSVGAQHFAI 664 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 1/102 (0%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + E TRV + G ++E E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQ 101 G ++ FL ++I P + +++ + + R Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDHRRSDD 102 >UniRef50_A9ESZ7 Ribonuclease G n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESZ7_SORC5 Length = 907 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 177/413 (42%), Positives = 262/413 (63%), Gaps = 3/413 (0%) Query: 77 TECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGA 136 + E + I E+VR+GQ+++VQV K+P+GTKGAR+T+ I+LP RY+V++P Sbjct: 492 SRSWQNEPPRISKSTPIREVVREGQEVIVQVSKEPIGTKGARVTSHISLPGRYVVYLPTV 551 Query: 137 SHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKV 196 H+G+S+RI SE ER RL+ + QGG I+RT AEG+ + +L +D YL R+W +V Sbjct: 552 DHIGISKRIGSEKERSRLRDAIEAMKPPQGGLIVRTLAEGLTKKQLKADVGYLVRLWGEV 611 Query: 197 MERKKRP-QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 ++++ + LY EL L + RD ++++I +D R Y L F ++PE Sbjct: 612 AKKRESGVRAPAVLYTELDLVLKTARDLFTDDIEKIVIDDREEYIRLRRFVEMFMPERAD 671 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH-- 313 +E Y G +PIFD + +E+EIQRAL RKV L SGG+LIIDQ EA+T +D+NTG FVG Sbjct: 672 AVELYEGTEPIFDAYGIEDEIQRALSRKVPLPSGGHLIIDQAEALTAIDVNTGRFVGKGS 731 Query: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 ++L++TI TN+EA + IA QLR RN+GG+II+D IDM +R +V LE+ LS+D+ Sbjct: 732 KDLEETILTTNLEAVEEIAYQLRFRNIGGLIILDLIDMERAQNREKVRRRLEELLSRDKA 791 Query: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 KT++N S LGL+EMTRKRTRES+ + C C G G +++ +TV YEI+R+I R Sbjct: 792 KTTLNRISDLGLIEMTRKRTRESLGRTILEPCFYCDGTGQLQSKQTVAYEILRQIRRERM 851 Query: 434 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 +V A PAV + LK +E ++ E E +++ + Y+ EQFD+ Sbjct: 852 NLPGYSVVVNAHPAVIDLLKNDERIAVQEAERLFQRRIDLVPRKEYHLEQFDL 904 Score = 99.9 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 48/93 (51%), Positives = 66/93 (70%), Gaps = 1/93 (1%) Query: 1 MTAELL-VNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M LL +NV ETRVA I+ GI+ E+H+ERE+ +G +GNIY G+VSRVLPGMQAAF+D Sbjct: 1 MGKNLLVINVDIRETRVALIENGIIAELHLERESSKGTLGNIYLGKVSRVLPGMQAAFID 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRD 92 +GL++AAFLH D++ + A + TV + Sbjct: 61 VGLERAAFLHVEDLIRPDDFEAYLAGHRRTVEE 93 >UniRef50_A6LDG7 Ribonuclease G n=21 Tax=Bacteria RepID=A6LDG7_PARD8 Length = 525 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 156/505 (30%), Positives = 263/505 (52%), Gaps = 20/505 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +EL+V+V P E +A ++ L E+ E VG+IY G+V +++PG+ AAF+D+ Sbjct: 1 MISELVVDVQPKEVSIAVLEDKSLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFIDV 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRD-------------------ISELVRQGQ 101 G K AFLH D+ P+ ++ + IS++++ GQ Sbjct: 61 GYKKDAFLHYLDLGPNFNTQQKYLKQLLSDPKKAPVLSKTQILPEIEKNGSISDVLKVGQ 120 Query: 102 DLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY 161 +++VQ+ K+P+ TKG RLT++++ RY+V +P A V VS +I+S ER RL++++ Sbjct: 121 EVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSVSTKIKSSEERARLRQLIQSI 180 Query: 162 CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 221 + I+RT++EG AEL + L + W + + + + +Y E A +LR Sbjct: 181 KPKNFSVIVRTSSEGKRVAELDHELKTLMKRWEDNIVKVPKLKAPAIIYEETARTVALLR 240 Query: 222 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 281 D + I V+ + Y + ++ S P ++ YTG PIFD F V +I+ Sbjct: 241 DIFNPSFQNIYVNDKEVYNNVRDYVSLIAPGREEIVQLYTGELPIFDNFAVTKQIKSLFG 300 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTG-AFVGHRNLDDTIFNTNIEATQAIARQLRLRNL 340 R V KSG YLII+ TEAM +D+N+G G + T + NI A IARQLRLR++ Sbjct: 301 RTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNIAAADEIARQLRLRDM 360 Query: 341 GGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 GGII+IDFIDM +R+++ + +A++ DR K ++ S GL+++TR+R R +++ Sbjct: 361 GGIIVIDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLMQITRQRVRPAMDVD 420 Query: 401 LCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSL 460 +CP+C G GTVK + +I + + + +F ++ P VA + Sbjct: 421 TSEDCPSCFGTGTVKPSILFTDSLEEKIDCLVNKHHVKKFTLHVHPYVAAYVNKGLFPLS 480 Query: 461 AEVEIFVGKQVKVQIEPLYNQEQFD 485 + ++ +KV ++ Sbjct: 481 MKWKMKYTHGLKVIPNQSLAFLEYK 505 >UniRef50_D2RM73 Ribonuclease, Rne/Rng family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM73_ACIFE Length = 476 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 169/487 (34%), Positives = 261/487 (53%), Gaps = 28/487 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 + V+V P ETR+ ++ L++ +ER + +VGN+Y+ RV V+PG+QAAFVD+ Sbjct: 2 NTIFVSVRPEETRMGTVEDDQLRDYAVERNSADNLVGNVYRARVCNVVPGIQAAFVDLNT 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K FL E + +GQ L+VQVVKD G+KG +T D Sbjct: 62 GKNGFLTLKK---------------------GETLSEGQMLLVQVVKDARGSKGPAVTRD 100 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 ITLP RY+V P S V +S++I +++R+ L+ E + G ++RTAA E E+ Sbjct: 101 ITLPGRYVVLEPYGSRVSLSRKISCKTKRKELRDWARELLPDHMGLVLRTAAAHAEEDEI 160 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 +D L R W ++ R K + LY EL LA R++RD+ ++RI VD T L Sbjct: 161 RADLEQLLRNWDVLVRRSKVGRGPQLLYRELDLAIRLVRDYVTDRVERIIVDEEKTCRRL 220 Query: 243 LEFTSEY-IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 E + +P + ++ Y G++ +F + ++ +I+ +R V L GGYL+ID TEAMT Sbjct: 221 QEMLRDMGLPGIQ--VKLYRGKEDLFTFYRLDEDIESLSDRVVWLPGGGYLVIDCTEAMT 278 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+N+G F + D T TN EA + IARQLRLR++GGII+ DFIDM+ E+ + +L Sbjct: 279 VIDVNSGKFSTGADRDATSMATNREAAREIARQLRLRDIGGIIVADFIDMDREEEQEEIL 338 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 L++ + D++K V + L LVEMTR + R+++ +L CP C G G V++ ETV Sbjct: 339 QILKKEFASDKMKPKVIDLTQLNLVEMTRMKARKNLAGILYTTCPLCGGSGRVESPETVY 398 Query: 422 YEIMREIVRVHHAYD-SDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 EI R + S L+ P V L+ L ++E +K+ +P Sbjct: 399 VEIRRRLRSTFLQGKMSHALLLTVHPLVYSWLRQ---QGLRDMEQEFHCSLKLASDPSLE 455 Query: 481 QEQFDVV 487 F ++ Sbjct: 456 VGVFTLL 462 >UniRef50_D1BNE2 Ribonuclease, Rne/Rng family n=3 Tax=Veillonella RepID=D1BNE2_VEIPT Length = 475 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 166/489 (33%), Positives = 269/489 (55%), Gaps = 21/489 (4%) Query: 4 ELLVNVTPSETRVAYI-DGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++LVNV E R+A I + G L + +ER + ++YKG V VL GMQAAFVDIG Sbjct: 3 KILVNVMREEIRMAVIDEEGQLVDFVLERTDDSHMANHMYKGTVKNVLNGMQAAFVDIGG 62 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + A+L+ Q + I + GQ ++VQVVK+ + KGAR+T D Sbjct: 63 SQNAYLNLQ---------------QGKEQKILPRLSVGQQILVQVVKEEMLGKGARVTAD 107 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 ++L R++V +P + + +S++I E+ R +L+++ A Y E GFIIRTAA E+ Sbjct: 108 VSLAGRFMVLLPYSEGMHISKKITDEALRSKLQELAAPYVQEGCGFIIRTAAAKASADEI 167 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D YL R W V++R K ++ LY + R++RD+A ++ I VDS + L Sbjct: 168 GRDMEYLWRTWQHVLKRFKVAKSGTDLYSDADFWFRLVRDYAHRNVEEIIVDSDMGESRL 227 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 L+ K+ + PIF +E +++ + R + L SGG + ID TEA+T Sbjct: 228 LDLLGHGPTSQQIKVTRHRDSTPIFKANHIEPQLEDLISRDINLPSGGSIRIDHTEALTV 287 Query: 303 VDINTGAFVGHRN-LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 D+N+ + G N L+D F N EA + I RQLRLR++GGII++DFIDM +++H++ +L Sbjct: 288 FDVNSAHYTGKSNKLEDLAFTVNKEAAKEICRQLRLRDIGGIIVVDFIDMKDKEHQQELL 347 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 L D++KT V G S+LGLVEMTRKR R+ ++ ++ + CP C G G + + TV Sbjct: 348 KLLGVQAKLDKMKTVVCGISSLGLVEMTRKRARQGLQTLMFDTCPQCGGTGYMLSGRTVY 407 Query: 422 YEIMREIVRVHHAYDSD-RFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 +I+R I + + + P VA+ L L ++ +G+++ + + P + Sbjct: 408 MQIVRRIRELFKSGRIKTNLEIEVHPEVAQYLTK---AVLEDLGESIGRKISIVVNPQIS 464 Query: 481 QEQFDVVMM 489 +E + ++ + Sbjct: 465 REGYSLMAI 473 >UniRef50_B9JVK9 Ribonuclease E n=40 Tax=Rhizobiales RepID=B9JVK9_AGRVS Length = 1035 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 128/402 (31%), Positives = 205/402 (50%), Gaps = 2/402 (0%) Query: 87 QFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRI 145 I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A G+S++I Sbjct: 289 PRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKI 348 Query: 146 ESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQ 204 + ++R+RLK+V + G I+RTA + E+ D YL R+W V Sbjct: 349 TNPADRKRLKEVARDLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLNST 408 Query: 205 TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQ 264 +Y E +L +R +RD + ++ I V Y +F +P ++ Y Sbjct: 409 APCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYREAKDFMKMLMPSHAKVVQPYRDIH 468 Query: 265 PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTN 324 PIF +E ++ R L+ +V LKSGGY+II+QTEA+ ++D+N+G +++DT TN Sbjct: 469 PIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREYSIEDTALQTN 528 Query: 325 IEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALG 384 +EA + +ARQLRLR+L G+I+IDFIDM + + R V L+ L DR + V S G Sbjct: 529 LEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFG 588 Query: 385 LVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYA 444 L+EM+R+R R S+ C C G G +++ +V ++R + + V Sbjct: 589 LLEMSRQRIRASVLESTTQVCQHCSGTGLIRSQSSVALHVLRGVEEYLLKSTTHDITVRT 648 Query: 445 SPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 P A L + S+ + E G + + + + F + Sbjct: 649 LPETALYLLNHKRGSIVDYENRFGVSIIIDSDASVGHQHFAI 690 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 1/102 (0%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + E TRV + G ++E E + ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQ 101 G ++ FL ++I P + +++ + E R Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEHGRHDD 102 >UniRef50_Q9K8J2 Ribonuclease G (Cytosolic axial filament protein) n=1 Tax=Bacillus halodurans RepID=Q9K8J2_BACHD Length = 500 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 193/487 (39%), Positives = 297/487 (60%), Gaps = 4/487 (0%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +L N+ E R A ++ G + E+ IER IVGN+Y+GRV VLPGMQA FVDIG Sbjct: 2 KSILFNMATRERRAAVVENGQVIELMIERPVEERIVGNVYRGRVVNVLPGMQACFVDIGR 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K FL+ +++ + ++ EE+ + R+IS+ V++G++L+VQV K+ GTKG RLT Sbjct: 62 EKNGFLYRDELL--SFHLSNEEEDEKKKRNISDFVQEGEELLVQVTKEGFGTKGPRLTGV 119 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 + P RY+V+MP A +VGVS++I E ERER + + G IIRTA + E Sbjct: 120 VAFPGRYVVYMPQAGYVGVSKKIFPEEERERWRSEWEQLLLNDEGLIIRTACKKEVRHEA 179 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + + +++W ++ +R K + LY L +R+LRDF E+ I VD R Y + Sbjct: 180 EQEILFFRQMWEELQKRGKGAKAPSLLYQSSGLIERILRDFPLDEVGEIVVDDREEYHFI 239 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + + Y P M S++ Y G++ +F VE EI++ L R+V LK+GGYL++D EA+T Sbjct: 240 KQLLASY-PNMESRVFLYKGKENVFSHLKVEKEIEKGLRRQVWLKNGGYLMMDHAEALTV 298 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+G F+G ++L DT+ NIEA + IA QLRLR++ GIIIIDFIDM E+ ++ VLH Sbjct: 299 IDVNSGKFIGKQDLQDTVVKVNIEAAKEIAHQLRLRDISGIIIIDFIDMKREEDQQLVLH 358 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +LEQAL DR KT+V G + LGLVEMTRK+ R+S++ L CPTC G G V + E + Sbjct: 359 TLEQALKTDRTKTNVIGMTGLGLVEMTRKKVRQSLQASLSKPCPTCRGTGQVLSDEAQAF 418 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 +I RE+ + D++ ++ +A L G++ L +E +G ++ + +E Sbjct: 419 KIERELW-EYRGSDAEAIVLELPSHIAPVLFGQDGGHLKRLETAIGSRILAVPKKTLKEE 477 Query: 483 QFDVVMM 489 Q+++ + Sbjct: 478 QYEIRYI 484 >UniRef50_B5ZYQ5 Ribonuclease, Rne/Rng family n=7 Tax=Alphaproteobacteria RepID=B5ZYQ5_RHILW Length = 965 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 130/411 (31%), Positives = 212/411 (51%), Gaps = 2/411 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E ++K I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A Sbjct: 252 EVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTA 311 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I + ++R+RLK++ + G I+RTA + E+ D YL R+W Sbjct: 312 RGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWEN 371 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V +Y E +L +R +RD + ++ I V Y +F +P Sbjct: 372 VRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKMLMPSHAK 431 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y PIF +E ++ R L+ +V L+SGGYLI++QTEA+ ++D+N+G + Sbjct: 432 VVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRSTREHS 491 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA + IARQLRLR+L G+I+IDFIDM + + R V L++ L DR + Sbjct: 492 IEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKNDRARI 551 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R S+ C C G G V++ +V ++R I Sbjct: 552 QVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEEYLLKN 611 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + V +P +A L + ++ + E G + + + + F + Sbjct: 612 TTHNISVRTTPDIALYLLNHKRQTIIDYENRFGVAIVIDADGSVGAQHFAI 662 Score = 104 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + E TRV + G ++E E + ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD 102 G ++ FL ++I P + +++ + E R Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDEDV 103 >UniRef50_B5ZDP7 Ribonuclease, Rne/Rng family n=12 Tax=Alphaproteobacteria RepID=B5ZDP7_GLUDA Length = 1009 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 136/404 (33%), Positives = 210/404 (51%), Gaps = 3/404 (0%) Query: 86 KQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGA-SHVGVSQR 144 + I E++R+ Q L+VQVVK+ G KGA LTT I+L RY V MP + GVS++ Sbjct: 158 RFLRNYKIQEVIRRRQILLVQVVKEERGNKGAALTTYISLAGRYCVLMPNSLRGGGVSRK 217 Query: 145 IESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRP 203 I S ++R RLK V+AE I+RTA E+ D YL R+W + + Sbjct: 218 ITSVADRRRLKDVIAELQIPRGMAMIVRTAGAQRPRPEIMRDCEYLLRLWDDIRDHTMHS 277 Query: 204 QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYT-G 262 +Y E +L +R +RD ++ I VD +++ EF +P+ K++ + G Sbjct: 278 VAPALIYEEASLIKRAIRDIYTRDVGEILVDGEAGWKSAREFMRMLMPQSAPKVKCWRDG 337 Query: 263 RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFN 322 QP+F F+VE + L V+L+SGGYL+I+Q EA+ +D+N+G RN+++T Sbjct: 338 GQPLFSHFNVEGLLDSMLSPTVQLRSGGYLVINQAEALVAIDVNSGRATRERNIEETALR 397 Query: 323 TNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSA 382 TN+EA + +ARQLRLR+L G+I+IDFIDM + H V L+ AL DR + V S Sbjct: 398 TNLEAAEEVARQLRLRDLAGLIVIDFIDMESRKHNGMVERRLKDALRTDRARIQVGAISH 457 Query: 383 LGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLV 442 GL+EM+R+R R SI CP C G G ++ E+ ++R + + V Sbjct: 458 FGLLEMSRQRLRPSIAESTFTPCPHCQGTGIIRGTESAALHVLRAVEEEGARRRAAEITV 517 Query: 443 YASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + + +A + + L+E+E V + Q + Sbjct: 518 HVAAEIALYILNNKRAWLSEIEKRHKMHVVFSPDASLLPPQLRI 561 Score = 104 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M +L++ T ETRV +DG L++ +E A++ + GNIY +V RV P +QAAFV+ Sbjct: 1 MNKRMLIDTTHAEETRVVVMDGNRLEDYDVEASAKKQLKGNIYLAKVIRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISEL 96 G ++ FL S+I P + ++++ E Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREKLLALQEEEA 97 >UniRef50_B9JDP7 Ribonuclease E protein n=3 Tax=Alphaproteobacteria RepID=B9JDP7_AGRRK Length = 960 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 129/411 (31%), Positives = 209/411 (50%), Gaps = 2/411 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E ++K I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A Sbjct: 240 EVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTA 299 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I + +R+RLK++ G I+RTA + E+ D YL R+W Sbjct: 300 RGGGISRKITNPQDRKRLKEIAKMLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWEN 359 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V +Y E +L +R +RD + ++ + V Y +F +P Sbjct: 360 VRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKDFMKMLMPSHAK 419 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y PIF +E ++ R L+ +V LKSGGYLI++QTEA+ ++D+N+G + Sbjct: 420 VVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNSGRSTREHS 479 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA +ARQLRLR+L G+I+IDFIDM + + R V L++ L DR + Sbjct: 480 IEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKNDRARI 539 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R S+ C C G G V++ +V ++R I Sbjct: 540 QVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEEYLLKN 599 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + V +P +A L + ++ + E G + + + + F + Sbjct: 600 TTHDITVRTTPEIALYLLNHKRQTIVDYESRFGVAIIIGADNAVGAQHFAI 650 Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + E TRV + G ++E E + ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD 102 G ++ FL ++I P + +++ + E R Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDDDV 103 >UniRef50_B8EPB2 Ribonuclease, Rne/Rng family n=1 Tax=Methylocella silvestris BL2 RepID=B8EPB2_METSB Length = 1080 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 136/401 (33%), Positives = 211/401 (52%), Gaps = 2/401 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E V Q+ I E++++ Q L+VQVVK+ G KGA LTT ++L RY V MP A Sbjct: 331 EEVPVRPQRYRRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTA 390 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I ++R+RLK + E E G I+RTA + E+ D YL R+W Sbjct: 391 RGGGISRKITDSTDRQRLKSIAQELEVPEGMGVILRTAGASRTKPEVKRDFEYLLRMWET 450 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V E + +Y E +L +R +RD + ++D I V Y +F +P + Sbjct: 451 VRETTLKSSAPTLVYEEGSLIKRAIRDLFNKDIDDIVVAGDKGYREARDFMRLLMPSHVN 510 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y QPIF DVE ++ +V LKSGGY++I+QTEA+ +D+N+G N Sbjct: 511 SVQPYRDAQPIFSKSDVETQLDAMFLNQVTLKSGGYIVINQTEALVAIDVNSGRSTREHN 570 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA +ARQLRLR+L G+I++DFIDM + R V L+ AL DR + Sbjct: 571 IEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEEGRNNRAVERRLKDALKNDRARI 630 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R + CP C G G +++ ++ ++R Sbjct: 631 QVGRISHFGLLEMSRQRIRTGVLEGSTELCPHCSGSGILRSTASIALHVLRVAEDALLKS 690 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIE 476 S ++ AVA + E+ L ++E G V ++++ Sbjct: 691 ASHDLIIRTRSAVALYILNEKRAHLRDLERRFGVAVSIEVD 731 Score = 109 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 1/103 (0%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + P ETRV + G ++E E +++ + GNIY +V+RV P +QAAFVD Sbjct: 1 MANKMLIDASHPEETRVVVLRGNRVEEFDFESASKKQLRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD 102 G ++ FL S+I P + +++ + R+ D Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVVDRQALIEEEARAQQREADD 103 >UniRef50_Q4JWU2 Ribonuclease E n=2 Tax=Corynebacterium jeikeium RepID=Q4JWU2_CORJK Length = 1013 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 150/423 (35%), Positives = 239/423 (56%), Gaps = 17/423 (4%) Query: 8 NVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAF 67 + T+V ++ G L E + + ++GN+Y GRV VL M+AAFVDIG + A Sbjct: 344 DRKGMMTQVGVVEDGQLVEHFVADATHQSLIGNVYLGRVQNVLGSMEAAFVDIGTGRNAV 403 Query: 68 LHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPS 127 L+A ++ + + R I + +R G ++VQV+KDP+G KGARLT I+ Sbjct: 404 LYAGEMDWRSPHL------HSKSRKIDQALRPGDQILVQVLKDPIGHKGARLTNRISFAG 457 Query: 128 RYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAA 187 RYLV+ P + G+S+++ ER+RLK ++ E GG IIRTAAE E ++ D Sbjct: 458 RYLVYFPAGTTAGISRKL-PAGERKRLKDILGEVITGDGGAIIRTAAENATEEQITEDVQ 516 Query: 188 YLKRVWTKVM-----ERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 L++ W ++ ER + LY E + +V+RD +A+ + +D +++A+ Sbjct: 517 RLEKRWQEIQKLENKERNSKGSKPVTLYEEPNMLIQVVRDVFNADFSELIIDGDKSWQAV 576 Query: 243 LEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 ++ PE+ ++ + Q F D++ ++++A+ RKV L SGGYLIID TE Sbjct: 577 RDYLGRTSPELMDRVHKWNRGKHDGQDAFAPLDLDQQLEKAMARKVWLPSGGYLIIDHTE 636 Query: 299 AMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 AMT +D+NTG+FVG NL+ T+ N+EA + I RQLRLR++GG+I++DFIDM + ++ Sbjct: 637 AMTVIDVNTGSFVGSGGNLEATVTENNLEAAEEIVRQLRLRDIGGMIVVDFIDMLLQQNQ 696 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 VL L + L +DR + + ++LGLV++TRKR + C C GRG + Sbjct: 697 DLVLRRLSEFLGRDRTRHKLGEVTSLGLVQLTRKRLGTGLLETFSTPCEACDGRGFIMHP 756 Query: 418 ETV 420 + V Sbjct: 757 DPV 759 >UniRef50_C4LJU7 Ribonuclease E n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJU7_CORK4 Length = 1258 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 157/461 (34%), Positives = 249/461 (54%), Gaps = 48/461 (10%) Query: 3 AELLV------NVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAA 56 ++V + + T+VA ++ L E + E R +VGNIY GRV VL M+AA Sbjct: 416 RRMIVRDSVRSDGSGKVTQVAIMEDDQLVEHFVTSERTRTLVGNIYLGRVQNVLASMEAA 475 Query: 57 FVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKG 116 FVDIG D+ +++ DI G ++K I + ++ G ++VQV KD +G KG Sbjct: 476 FVDIGTDRNGVIYSGDIDWRHTRHTGRQRK------IEKALKPGDPILVQVTKDSVGHKG 529 Query: 117 ARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEG 176 RLT+ I+L RYLV++P GVS+++ E ER+RLKK V+ ++GG IIRTAAEG Sbjct: 530 PRLTSHISLAGRYLVYVPEGRAHGVSRKL-PEPERKRLKKAVSGILPDEGGAIIRTAAEG 588 Query: 177 VGEAELASDAAYLKRVWTKVMERKKRPQT------------------------------R 206 V ++A D + VW ++E+ +T Sbjct: 589 VDTEDIARDVRRQQNVWDTILEKADELRTLPGSQASSGKGSGKKNSKGGKKGSKPHFDGP 648 Query: 207 YQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYT----G 262 L+ E L +V+RD + + D + VD ++ + + P++ KL Y Sbjct: 649 QTLHEEPNLLVKVVRDLFNEDFDELIVDGGRSWSMVSSYIHRIAPDLEEKLSKYERQDHD 708 Query: 263 RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH-RNLDDTIF 321 Q F + ++ ++++AL+R V L SGG L+I++TEAMT +D+NTG F G +L++T+ Sbjct: 709 GQDAFGHWGIDKQLKQALDRVVFLPSGGTLVIEKTEAMTVIDVNTGRFTGSSGSLEETVT 768 Query: 322 NTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFS 381 N+EA I RQ+RLR++GG+I++DFIDM E+++ VL L +AL+KDR + + + Sbjct: 769 RNNLEAADEIVRQMRLRDIGGMIVVDFIDMVLEENQELVLRRLSEALAKDRTRHQLGEVT 828 Query: 382 ALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +LGLV++TRKR + + C CHGRG + + + Sbjct: 829 SLGLVQITRKRLGKGLVETFSTPCSECHGRGFIVHDDPILL 869 >UniRef50_C0R3W8 Ribonuclease, Rne/Rng family protein n=9 Tax=Wolbachia RepID=C0R3W8_WOLWR Length = 590 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 142/528 (26%), Positives = 253/528 (47%), Gaps = 49/528 (9%) Query: 5 LLVNVTP--SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 LL+ + +E RVA + E E + ++ + GNIY + R+ P +QA F++ G Sbjct: 9 LLIENSTCSNEVRVALSVNNKVVEFEQEFKEKKQLRGNIYVAYIKRIEPSLQAVFIEYGK 68 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQ----------------------------------- 87 +K FL S+I + +E++ Sbjct: 69 NKQGFLSFSEISLDYFNIPEKEKETIFESYSNDDYTEKGNDTIANVSSDSAASKNVNESG 128 Query: 88 ---------FTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGA-S 137 + + +++ Q ++VQ+ K+ G KGA TT ITL RY VFMP + S Sbjct: 129 SGFVREVPLYKKYKLQDVISVNQKVLVQLTKEERGNKGASFTTYITLVGRYCVFMPNSMS 188 Query: 138 HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKV 196 GVS+RIE + R++LK++++ ++ G I+RT G + E+ D YL +W + Sbjct: 189 KGGVSRRIEDANVRKQLKEILSSINLPKRSGLIVRTVGSGKNKKEIEQDYNYLSSLWQSI 248 Query: 197 MERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSK 256 + +Y E + R +RDF + + V + +EA+ ++ + + + Sbjct: 249 QKNAFSVNVPSLIYNEADVIMRSVRDFCSDGI-EVIVSGKEAFEAVRQYANNALKGSKLR 307 Query: 257 LEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNL 316 Y G PIF + +E++I +VEL SGG LII TEA ++D+N+G G ++ Sbjct: 308 YRLYRGYAPIFTYYGIEDQISELYSNRVELPSGGSLIITLTEAFVSIDVNSGKMTGEDSI 367 Query: 317 DDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTS 376 ++T + TN+EA I+RQ+ LR L G+I++DFIDM + R V +++QA D+ K Sbjct: 368 EETAYRTNMEAVPEISRQVNLRGLSGLIVVDFIDMLKYQYCRAVESAIKQAFKDDKAKVQ 427 Query: 377 VNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYD 436 + + GL+ +R+R + +I+ + EC C G G VK+ E + I+R++ + + Sbjct: 428 FSYINDFGLMVFSRQRIKPNIQEINTTECLHCKGTGRVKSNEVIVSSILRDLQHIANKNR 487 Query: 437 SDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQF 484 + F + A AV + + ++++ +E + V I+ + F Sbjct: 488 NKSFDLVAHSAVIAHIFNNKRNTVSTIEKEFNITLNVSIDNSLDVNTF 535 >UniRef50_Q01YX3 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YX3_SOLUE Length = 913 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 167/411 (40%), Positives = 267/411 (64%), Gaps = 3/411 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGAS 137 E + + IS+L+++GQ+++VQ+ K+PLG KGAR+T+ I LP R+LV+MP Sbjct: 503 EARPDARSDRPPLPSISDLLKEGQEIIVQIAKEPLGQKGARITSHIALPGRFLVYMPTVD 562 Query: 138 HVGVSQRIESESERERLKKVVAEYCDE-QGGFIIRTAAEGVGEAELASDAAYLKRVWTKV 196 H+GVS++I S+ ER RLK+++ GG+I+RTA +G E EL +D +L +W + Sbjct: 563 HIGVSRKIPSDDERLRLKRILQTNRTGIPGGYIVRTAGDGRTEEELRADMMFLYNLWLDM 622 Query: 197 MERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSK 256 ++ +R ++ +L + +R+LRD + + VD+ YE++L F + P + ++ Sbjct: 623 RQKAERRAAPLLIHHDLNVVERILRDQLTSSYKSVWVDNEEVYESVLRFVQRFQPALVNR 682 Query: 257 LEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN- 315 ++ YT PIFD F + E+++AL KV LKSGGY++I+QTEA+ +DINTG +VG N Sbjct: 683 VKMYTRSTPIFDEFGITAELEKALRPKVWLKSGGYIVINQTEALVAIDINTGKYVGKSNR 742 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 L+DTI TN +A + I RQ+RLR+LGGII++DFIDM+ +R++V+ +LE+A+ DR Sbjct: 743 LEDTIVKTNTDAIKEIVRQIRLRDLGGIIVVDFIDMDERKNRQKVMQALEEAMRADRAPY 802 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 + F+ GLV +TRKR ++S+E LC CP C G G VK+ +TV EI++E ++ A Sbjct: 803 KILQFNDFGLVAITRKRVKQSLERTLCTPCPYCEGAGYVKSPQTVVGEILQEAHKIARAV 862 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 D + ++ +P VA+ LK ++ L EVE +G+ V V+ +PL +QE+FD+ Sbjct: 863 DGN-VMLRVAPEVAKLLKSNQNTFLQEVEEILGRPVIVKSDPLLHQEKFDL 912 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 39/78 (50%), Positives = 55/78 (70%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ EL+++ T ETRVA I+ + EI+ +RE + G+I+KGRV+RVLPGMQ+AFVDI Sbjct: 1 MSKELIISATRHETRVAVIEEDQVVEIYHQRENEYSLAGSIHKGRVTRVLPGMQSAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTE 78 GL + AFL+ SD + Sbjct: 61 GLGRDAFLYVSDFFEDND 78 >UniRef50_C6D805 Ribonuclease, Rne/Rng family n=3 Tax=Bacillales RepID=C6D805_PAESJ Length = 411 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 166/412 (40%), Positives = 256/412 (62%), Gaps = 8/412 (1%) Query: 11 PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHA 70 + A + G L + +E+ G+VGN+YKGRV VLPGMQAAFVDIGL K AFL+ Sbjct: 5 GELLQTAVLMDGRLIDFFMEQSESSGLVGNVYKGRVVNVLPGMQAAFVDIGLGKNAFLYI 64 Query: 71 SDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYL 130 D++ E++ I+ELV+ GQ+L+VQV+K+P+G+KGAR+TT TLP R+L Sbjct: 65 DDLLHPHL-----EKQPEHKPSITELVKPGQELVVQVMKEPMGSKGARVTTHFTLPGRWL 119 Query: 131 VFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLK 190 V+MP A ++GVS++I +ESER R++ + + G I+RTAAEG E L +D L+ Sbjct: 120 VYMPIAGYIGVSKKIMAESERSRIRMIGERLRQGEEGIIMRTAAEGECEESLGADVDQLR 179 Query: 191 RVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYI 250 ++WT V++R + +L+ E L +R +RD ++D + +D Y + E Sbjct: 180 QLWTSVLQRADHAKAPAELHREAGLLRRAVRDTLTDDMDEVWLDDPSRYSEAVSLLKEMT 239 Query: 251 PEMTSKLEHYT---GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINT 307 P + +L+ + + +FD F V ++I+ A ++ L+SGG L+ D+TEA+T +D+NT Sbjct: 240 PHLAGRLKLFEARKEKVSLFDRFGVTDQIEAAFSSRIRLESGGSLVWDETEALTVIDVNT 299 Query: 308 GAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQA 367 ++G L+DT+F TN+EA IAR LR+R++GGII+IDFIDM NE +R +V+ L Sbjct: 300 AKYIGATGLEDTVFKTNMEAADEIARLLRIRDVGGIIVIDFIDMENESNREKVMARLSDW 359 Query: 368 LSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 KDR K +V G++ LGL+E+TR++ R++ L CP C G G ++ + Sbjct: 360 AKKDRTKCTVFGWTRLGLLELTRRKARDNAARQLTERCPACGGTGKKSSIHS 411 >UniRef50_UPI00003842F2 COG1530: Ribonucleases G and E n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003842F2 Length = 836 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 137/406 (33%), Positives = 211/406 (51%), Gaps = 3/406 (0%) Query: 83 EEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGV 141 + I E++++ Q ++VQVVK+ G KGA LTT ++L RY V MP A GV Sbjct: 172 RRARLLRNYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGV 231 Query: 142 SQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERK 200 S++I S ++R RLK + E + IIRTA + E+ D YL R+W V E Sbjct: 232 SRKIVSATDRRRLKSIANEMDIPDGMAVIIRTAGSERSKTEIKRDYEYLLRMWDSVRELT 291 Query: 201 KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHY 260 + +Y E +L +R +RD ++D + VD Y ++ P K++ Y Sbjct: 292 LKSSAPALVYEEASLIKRSIRDLYSRDIDEVLVDGDEGYRLAKDYMRMLTPSHAKKVQPY 351 Query: 261 TGR-QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDT 319 P+F + VE ++ V+LKSGGY++I QTEA+ +D+N+G R++++T Sbjct: 352 KDPVMPMFHRYQVEAQLDAMHSPVVQLKSGGYIVISQTEALVAIDVNSGRATKERHIEET 411 Query: 320 IFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNG 379 TN+EA +ARQLRLR+L G+I+IDFIDM + V L++AL DR + V Sbjct: 412 ALKTNMEAADEVARQLRLRDLAGLIVIDFIDMEENRNNHAVERRLKEALKNDRARIQVGK 471 Query: 380 FSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDR 439 SA GL+E++R+R R S++ + CP C G G V++VE+ I+R I S Sbjct: 472 ISAFGLLELSRQRLRPSLQETTFSPCPHCGGTGLVRSVESAAVHILRAIEEEGIRRRSSE 531 Query: 440 FLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFD 485 VY S A+A + ++ +LA +E V + + F Sbjct: 532 VTVYVSSAIALYILNQKRSALAAIEERYEFDVFLSGDDTLIPPAFR 577 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L++ T P ETRV ++G L+E+ +E +R + GNIY +V RV P +QAAFV+ G + Sbjct: 1 MLIDATHPEETRVVVVNGTRLEELDVETSTKRQLKGNIYLAKVVRVEPSLQAAFVEYGGN 60 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQ 99 + FL S+I P + +++ +E++R+ Sbjct: 61 RHGFLAFSEIHPDYFQIPVADRQALLAAQRAEVMRE 96 >UniRef50_C6JJB6 Ribonuclease G and E n=2 Tax=Fusobacterium RepID=C6JJB6_FUSVA Length = 489 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 183/490 (37%), Positives = 295/490 (60%), Gaps = 6/490 (1%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++++N+ ++R A I+ G + EI IERE I G+IYKG+V+ VLPGM++AFV+IGL Sbjct: 2 NQIVINIDEFQSRAAIIEDGKVVEILIEREEEGRINGSIYKGKVANVLPGMESAFVNIGL 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K FL+ +D+ E + + R I +++ G D++VQ++ +P GTKGAR+TT Sbjct: 62 EKNGFLYVNDLREFEEKYL--DGILNSSRPIEDILNVGDDVVVQILNEPRGTKGARVTTH 119 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 T+P +YLV MP H+ +S++I+ E ERERL+ + E E G IIRTAA G E Sbjct: 120 FTIPGKYLVLMPNNDHIAISKKIKDEKERERLESIFKEIKPENMGVIIRTAAFGKSEFHF 179 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + YL + W + ++ K + LY + + VLRD ++D + VD+ Y + Sbjct: 180 EREIEYLVKKWEDIEKKIKGAKIGEVLYKDNGIITTVLRDIFSNDIDELIVDNEDVYWEV 239 Query: 243 LEFTSEYI-PEMTSKLEHYTG--RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 +++ + + + +K++ Y + IFDL+ + EI +AL V L+ GGYL+I +TEA Sbjct: 240 IDYINAFSEKTLKTKIKLYKDGKEKDIFDLYGINEEIDKALNEVVWLECGGYLVIQKTEA 299 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++D+NTG G NL++T+ NTNIEA + I RQLRLRN GGIIIIDFIDM E+ + + Sbjct: 300 LISIDVNTGKNTGSLNLEETVVNTNIEAAKEIPRQLRLRNFGGIIIIDFIDMRVEEDKIK 359 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 VL +LE+ L KDR+K ++ F+ LGLVEMTRKR+ + + + CP C+G G +K+ + Sbjct: 360 VLEALEKHLQKDRIKNNIVHFTDLGLVEMTRKRSGKPLAYYFQEVCPCCNGTGKIKSKDA 419 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + +E+M+EI D V S + E+ K + E K ++++++ Sbjct: 420 LIHELMKEIKICSEDKDISTIKVRLSKNLIESFKEIYFEIIKEFLKMKKKAIELEVDTN- 478 Query: 480 NQEQFDVVMM 489 N Q++++++ Sbjct: 479 NSCQYEIILV 488 >UniRef50_Q0G6Z6 Ribonuclease E and G n=2 Tax=Rhizobiales RepID=Q0G6Z6_9RHIZ Length = 1013 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 132/411 (32%), Positives = 215/411 (52%), Gaps = 2/411 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E V + + I E++++ Q L+VQVVK+ G KGA LTT ++L RY V MP A Sbjct: 283 EEVPVRQARPRKNYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTA 342 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I ++++R+RL+ VV E G I+RTA +AE+ D YL R+W Sbjct: 343 RGGGISRKITNQADRKRLRDVVKELDVPRGMGIILRTAGANRTKAEVKRDYEYLMRLWES 402 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V + +Y E +L +R +RD + ++D+I V Y +F +P Sbjct: 403 VRTLTLQSIAPSLVYEEGSLIKRSIRDLFNKDIDQILVSGEAGYREAKDFMRMLMPSQAK 462 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y PIF +E ++ + L+ V LKSGGY+II+QTEA+ +D+N+G + Sbjct: 463 AVQPYRDATPIFTRQGIEAQLDKMLQPHVTLKSGGYIIINQTEALVAIDVNSGRSTREMS 522 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 +++T + TN+EA + IARQLRLR+L G+I++DFIDM+ + + R V ++ L DR + Sbjct: 523 IENTAYQTNLEAAEEIARQLRLRDLAGLIVVDFIDMDEKRNNRNVEKKMKDCLKNDRARI 582 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R S+ CP C G G V+ ++ +R I Sbjct: 583 QVGKISHFGLMEMSRQRIRASVLESTMRPCPVCEGAGMVRATSSLALHAIRHIEDYLQKN 642 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 +V A + E+ H + E+E ++ ++ +P + Sbjct: 643 KGRDLIVKVPTETALFILNEKRHHIDELEQNHDLRIFIEADPSVGHNDLSI 693 Score = 89.5 bits (221), Expect = 2e-16, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + P ETRV + G ++E E E ++ + GNIY +V+RV P +QAAF++ Sbjct: 1 MANKMLIDSSHPEETRVVVVRGNRVEEFDFESEHKKQLKGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRD 92 G + FL S+I P + +++ + Sbjct: 61 YGGGRHGFLAFSEIHPDYYQIPKADREALLAEE 93 >UniRef50_D2RC82 S1 RNA binding domain protein n=8 Tax=Bifidobacteriaceae RepID=D2RC82_GARVA Length = 1093 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 152/422 (36%), Positives = 253/422 (59%), Gaps = 15/422 (3%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 ++V T+++ I+ IL E ++ VGNIY GR+ VLP M+AAFVDIG + Sbjct: 522 MVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQAR 581 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 L+A ++ + G+ R I + G ++VQV KDP+G KGARLT+ +T Sbjct: 582 NGVLYAGEVNWDMARLEGQP------RRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVT 635 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 L R+LV +P GVS+++ S+ ER RL+ +V++ + G IIRTAA+G E + Sbjct: 636 LAGRFLVLVPSGGMTGVSRKL-SDRERSRLRAIVSKIAPKDMGVIIRTAADGASEESIEK 694 Query: 185 DAAYLKRVWTKVMERKK---RPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 D L + W ++ +++ + L GE +A RV+RD + + ++ V+ + Sbjct: 695 DLDSLVKQWERIEAKREEYLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQR 754 Query: 242 LLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 + E+ P++ SK+E++ + +FD + +++++++ +ER+V L +GG ++ID+T Sbjct: 755 IDEYLEMMAPDLRSKVEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRT 814 Query: 298 EAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 EAMTT+D+NTG F+G ++L++T+ N+EA++ IARQLRLR++GG+++ID++DM + Sbjct: 815 EAMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPAN 874 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 R VL L + L++DR K V ++LGLV+MTRKR + + ECPTC GRG + Sbjct: 875 RDLVLRRLLECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGFILH 934 Query: 417 VE 418 E Sbjct: 935 DE 936 >UniRef50_C6ADR1 Ribonuclease E n=5 Tax=Rhizobiales RepID=C6ADR1_BARGA Length = 876 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 135/467 (28%), Positives = 227/467 (48%), Gaps = 13/467 (2%) Query: 30 EREARRGIVGNIYKGRVSR--------VLPGMQAAFVDIGLDKAAFLHASDIMPHTECVA 81 R ++ N+ + + +A DI D+ + A DI Sbjct: 117 SRRTKKNGKNNVIAADIENDITSETTIIDNTEEALNADISYDEIEMVGAEDIREELPIYQ 176 Query: 82 GEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVG 140 ++ +Q+ I E++++ Q L+VQV+K+ G KGA LTT ++L RY V MP A G Sbjct: 177 RKQGRQY---KIQEVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGG 233 Query: 141 VSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMER 199 +S++I + +R+RLK++V E + G I+RTA +AE+ D YL R+W + Sbjct: 234 ISRKITNVQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTL 293 Query: 200 KKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEH 259 ++ E L +R +RD + + I V Y +F +P ++ Sbjct: 294 TLESTAPCLVHEESNLIKRSIRDLYNKNISEILVSGDQGYREAKDFMRMLMPSHAKVVQP 353 Query: 260 YTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDT 319 Y PIF ++E ++ + L+ +V LKSGGYL+I+QTEA+ +D+N+G +++ T Sbjct: 354 YRDPTPIFARNNIEIQLDKMLQPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEFSVEKT 413 Query: 320 IFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNG 379 TN+EA + +ARQLRLR+L G+I+IDFIDM E + + V L+ L DR + V Sbjct: 414 ALQTNLEAAEEVARQLRLRDLAGLIVIDFIDMLEERNVKLVEKKLKDCLKNDRARIQVGH 473 Query: 380 FSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDR 439 S GL+EM+R+R R S+ CP C G G +++ ++ +MR I Sbjct: 474 ISHFGLLEMSRQRIRISVLESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLHNSQYN 533 Query: 440 FLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 +V A A + + + L +E + ++ + + + Sbjct: 534 IIVRTPVATALYVLNHKRNILVNLETRFKLNISIEADDSIGTQHLVI 580 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 1/86 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L++ + P ETRV + G ++E+ E E R+ + GNIY R++RV P +QAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHRKQLKGNIYLARITRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQ 85 G ++ FL S+I P + ++ Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADR 86 >UniRef50_A3ZLB1 Ribonuclease E n=4 Tax=Planctomycetaceae RepID=A3ZLB1_9PLAN Length = 588 Score = 492 bits (1268), Expect = e-138, Method: Composition-based stats. Identities = 142/402 (35%), Positives = 231/402 (57%), Gaps = 1/402 (0%) Query: 86 KQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRI 145 + I E+ ++G +++VQV+K+ +G+KG L+T I++P RYLV MP VGVS++I Sbjct: 165 RPRVKPPIQEIFKRGDEVLVQVIKEGIGSKGPTLSTYISIPGRYLVLMPALGRVGVSRKI 224 Query: 146 ESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQ 204 E + R RL+ + E +G GFI+RTA + + EL+ D AYL R+W ++ R K Sbjct: 225 EDDQVRRRLRSTLLELSPPKGLGFIVRTAGQERNKKELSRDMAYLLRLWKVIVRRLKNTT 284 Query: 205 TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQ 264 +Y E + R +RD +++D I VDS YE EF +P ++L+ Y + Sbjct: 285 GPCDIYEESDMIIRTIRDIFSSDVDSIYVDSEPAYERAKEFLQLVMPRHVNRLKKYESKD 344 Query: 265 PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTN 324 P+F + ++ EI R +R+V L+ GG ++IDQTEA+ +D+N+G F ++ + N Sbjct: 345 PLFHKYHLDEEIARINQREVPLRRGGSIVIDQTEALVAIDVNSGNFRYDGTAEEAAYQLN 404 Query: 325 IEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALG 384 + A + IARQLRLR+LGG+++ DFIDM E HRR V +L ++ +DR +T + S G Sbjct: 405 MMAAKEIARQLRLRDLGGVVVNDFIDMRREKHRRNVERALRDSVKRDRARTKILKTSPFG 464 Query: 385 LVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYA 444 L+EMTR+R R S++ + +CP C GRG VK+ E++ E++R ++ H + + Sbjct: 465 LIEMTRQRIRPSLKRSVFKDCPCCKGRGVVKSAESMAIEVVRMLLAAAHHDGASHVTIRV 524 Query: 445 SPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + VA L ++ LA +E V++ + E +V Sbjct: 525 NDEVATYLNNKKRRELARIEEDTNIVVQIYGSESFYPEHLEV 566 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 1/86 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M E+L+NV+ P E R+A ++ GIL+E ++ER ++ VGNIYKG V + P +QAAFVD Sbjct: 1 MKKEMLINVSQPEECRIAIVEDGILEEFYLERTSQDNYVGNIYKGVVVNLEPSIQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQ 85 G+ K FLH SD+ P G + Sbjct: 61 FGVGKNGFLHISDVEPQYFRQGGYDP 86 >UniRef50_C0ZAL2 Putative ribonuclease G n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAL2_BREBN Length = 491 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 166/486 (34%), Positives = 277/486 (56%), Gaps = 13/486 (2%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++ ++ R+A+++ G LQE + VG+IY+GR++ V PG+Q+AFVDIG Sbjct: 2 KQVAISTQGGSIRIAFMENGKLQEWRTQDVRSHASVGDIYQGRIADVKPGIQSAFVDIGT 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + A+L+ D + G E +I+E V GQ ++VQV K+ + K ++T Sbjct: 62 GQNAYLYVDDTV-------GVESGGTAKPNIAERVHVGQKVLVQVSKEAMEMKAPKITMR 114 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I+L RYLV++P + +S++I +++R+RL++V++ ++ G I+RT A E L Sbjct: 115 ISLQGRYLVYLPTEESISLSRKISDDTKRKRLQQVISSTVEQGEGCILRTEAAEAEEQTL 174 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + YL+ W + + ++ +++ + L + LRD +D + V+ T++ + Sbjct: 175 IRELTYLRNRWQDMRRTAEGLRSTGRIFQDAELIEVALRDGLANGMDELLVEGAATHQQV 234 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + + PE+ KL Y G+QP+FD VE E+ RA +R+V LKSGG L+ID+TEAMT Sbjct: 235 KAALAAFAPEVQEKLRWYQGKQPLFDYLGVEAELIRARDRQVPLKSGGSLVIDRTEAMTV 294 Query: 303 VDINTGAFVGHRNL--DDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+NTG+F G + + TN+EA IARQLRLR++GGI+IIDFIDM + ++ RV Sbjct: 295 IDVNTGSFTGAGGQQREQAVTATNLEAVAEIARQLRLRDIGGIVIIDFIDMKEQGNKERV 354 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 + L+Q L+KD V ++V G ++LGLVEMTRKR R S+ L C C GRG V V+ + Sbjct: 355 ISRLKQELAKDPVPSTVLGMTSLGLVEMTRKRVRASLMERLTEPCEACAGRGRVWRVDEL 414 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 + E+ + + D++ LV P + + ++ E + V K++ P + Sbjct: 415 LRRLYVEVTALAKSQDAEAALVDMPPRLLDMIEAWEKAEAVTWPVHVYKRLV----PSMS 470 Query: 481 QEQFDV 486 ++F + Sbjct: 471 PDEFRI 476 >UniRef50_Q11NU1 Ribonuclease G n=10 Tax=Bacteroidetes RepID=Q11NU1_CYTH3 Length = 535 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 152/505 (30%), Positives = 258/505 (51%), Gaps = 20/505 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ EL ++ + S R+A I L E E R+ VG+IY G V +V+PG+ AAF+D+ Sbjct: 1 MSNELFISSSQSGDRIALIQEKRLVEYQFEDHTRKFNVGDIYLGTVRKVVPGLNAAFIDV 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVR-------------------DISELVRQGQ 101 G +K AFLH D+ P + + + T +S+++ +G Sbjct: 61 GYEKDAFLHYFDLGPKIKSLTKFTKNAITSASTPALLKKFELEAEIKKDGKVSQVLEKGN 120 Query: 102 DLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY 161 ++VQVVK+P+ TKG RL+ +I+L RYLV +P ++ V VS++I + ER+RL ++++ Sbjct: 121 PILVQVVKEPISTKGPRLSCEISLAGRYLVLVPFSNVVSVSKKITDKEERQRLVRLISSI 180 Query: 162 CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 221 E G IIRT A AEL D L + W + K+ + R + GEL +LR Sbjct: 181 RPENFGVIIRTVASNKEVAELDKDLRNLVKTWEDGIAILKKARPRDLIIGELDRTSSILR 240 Query: 222 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 281 D + D I VD++ Y+ L + P+ ++ + G+ +F+ VE +++ Sbjct: 241 DMLNESFDSINVDTKELYDDLRSYIKNIAPDKERLVKLHQGKTKMFESTGVEKQLKTLFG 300 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTG-AFVGHRNLDDTIFNTNIEATQAIARQLRLRNL 340 + V L GGYLII+ TEA+ +D+N+G + ++T +TN+EA + +ARQLRLR++ Sbjct: 301 KSVSLSGGGYLIIEHTEALHVIDVNSGNKSNNETSQEETALHTNLEACREVARQLRLRDM 360 Query: 341 GGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 GGII++DFIDM N D+R+ + ++ + DR K + S GL+++TR+R R + Sbjct: 361 GGIIVVDFIDMKNLDNRKVIYERMKLEMKDDRSKNVILPLSKFGLMQITRERVRPQTNLI 420 Query: 401 LCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSL 460 CPTC+G G + + +I ++ + + + P + Sbjct: 421 TMEVCPTCNGTGKISASIAITDQIEHKLDYIITKQNEKNITLVLHPYIYAYFTTGYISKR 480 Query: 461 AEVEIFVGKQVKVQIEPLYNQEQFD 485 + + VK++ + +F Sbjct: 481 TKWFFKYFRWVKLRTDSSLGLTEFK 505 >UniRef50_A6CTK6 Cytosolic axial filament protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CTK6_9BACI Length = 494 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 153/479 (31%), Positives = 273/479 (56%), Gaps = 5/479 (1%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++VN E R A + GI++ H+ + + I GNIY GRV +V G+ AAF++IG Sbjct: 11 NRIIVNALGREKRWARLRDGIMESFHVYQPEKESIAGNIYIGRVDKVEKGLNAAFINIGE 70 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K FLH D+ + ++K+ +I+ L+ QGQ L+VQV KDP GTKG R+T Sbjct: 71 GKNGFLHIEDLAEYMLL----DEKERKTAEINRLLHQGQKLIVQVKKDPAGTKGPRVTGI 126 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I + LV++P + VS++ SE ++++ ++ + +E+ G + RTAA G E E+ Sbjct: 127 IEMKGTSLVYLPHGRYTAVSKKASSEEQKKKWRRFGSRIKEEEEGIVFRTAALGKAEKEI 186 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 ++ LK+ + ++ + + L+ + + + +L + + I D Sbjct: 187 QNEYLGLKKQYQELYSSSLSKKAPFLLHRQDVMKEDILEEIKKVKQAEIITDDYSWKNEF 246 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 EF + ++ H+ + IF + VE +I++A+++ V L +G ++I+ TEA+T Sbjct: 247 QEFLHNNKASLGGEITHFQSHENIFVHYRVETQIEKAMKKVVWLDNGATIVIEPTEALTV 306 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+NTG F G +L T+ TN A + IARQL++RNL GII+IDFI+M +E H+ V++ Sbjct: 307 IDVNTGKFTGKSDLSQTVLKTNELAAKEIARQLKIRNLSGIILIDFIEMKSEQHQTEVVN 366 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +L++ L +D +T++ GF+ LG++++TRK+T+ + + CP C G G V++ E++ Y Sbjct: 367 ALKEGLKEDGKRTTIVGFTELGILQLTRKKTKPPLLEYISCRCPICSGYGMVESAESMAY 426 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQ 481 ++ RE+ ++ A D D+ ++ A+ V + KGE S L E+E + K+++ Q + Sbjct: 427 KLERELYELYPA-DEDKVIIEATEDVQKVFKGESSQYLKEMEKSINKKIEFQPVSQSHP 484 >UniRef50_Q8DL99 Ribonuclease E n=3 Tax=Chroococcales RepID=Q8DL99_THEEB Length = 668 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 148/418 (35%), Positives = 231/418 (55%), Gaps = 17/418 (4%) Query: 1 MTAELLVNVTPSETRVA-YIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++++ E R+A +QE+ + + VG+IY G V VLPG+ AAFV+ Sbjct: 1 MPKQIIIA---EEHRLAAVFAEDQIQELIVATGTHQ--VGDIYLGVVENVLPGIDAAFVN 55 Query: 60 IGL-DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 +G + F+H SD+ P + + T I+EL+ Q ++VQV+K+P GTKG R Sbjct: 56 LGDASRNGFIHVSDLGPL--------RLKRTAGAITELLAPQQKVLVQVMKEPTGTKGPR 107 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 LT +I+LP RYLV MP V +S+RI +E+ER RL+ + G ++RT AEGV Sbjct: 108 LTGNISLPGRYLVLMPYGRGVNLSRRITNEAERHRLRALGILVKPAGMGLLVRTEAEGVS 167 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 E + D L+R W + ++ + L + Q+VLRD ++++RI VD+ Sbjct: 168 EEAILEDLELLQRQWETIQQQAAASRPPQLLGRDDDFIQKVLRDVYSSDVNRIVVDTPDG 227 Query: 239 YEALLEFTSEYIPEMTS--KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 + + + + ++++ PI D F V I+ AL+ +V+L SGGY+II Sbjct: 228 VKRVKQHLKNWNVNRPVGVLIDYHQEPIPILDYFRVNAAIREALKPRVDLPSGGYIIIQP 287 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+T +D+N+G+F +T+ TN EA IARQLRLRN+ G+II+DFIDM++ Sbjct: 288 TEALTVIDVNSGSFTSSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRD 347 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 + +L +AL D+ + + S LGLVE+TRKR ++I + C C G G + Sbjct: 348 QLLLLEHFSKALRADKARPQIAQLSELGLVELTRKRQGQNIYELFGRPCSACGGLGHL 405 >UniRef50_Q2JW46 Ribonuclease, Rne/Rng family n=4 Tax=Synechococcus RepID=Q2JW46_SYNJA Length = 711 Score = 486 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 150/420 (35%), Positives = 228/420 (54%), Gaps = 18/420 (4%) Query: 1 MTAELLVNVTPSETRVA-YIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M +++++ RVA +QE+ + + VG++Y G V VLP + AAFV+ Sbjct: 1 MPRQIVIDEQH---RVAAVFAEDQVQELIV--ASGTYQVGDVYVGIVENVLPSIDAAFVN 55 Query: 60 IGLD-KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 IG + F+H SD+ P + + ISELV Q ++VQV+K+P G KG R Sbjct: 56 IGSGERNGFIHVSDLGPL--------RLKRNHASISELVLPQQKVLVQVMKEPTGNKGPR 107 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 LT D+ P RYLV P V +S+RIE ER RLK + Q G ++RT AEGV Sbjct: 108 LTGDLAFPGRYLVLRPYGKGVHLSRRIEDREERNRLKSLAILIKPPQMGLLVRTEAEGVS 167 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 E + D LK++W + ++ + + L + QRVLRD +++RI DS Sbjct: 168 EEAMIEDLEQLKKLWEDIQQQYQAARGPGLLSRDDDFIQRVLRDVYSEDVNRIVTDSPAG 227 Query: 239 YEALLEFTSEYIPEMTS---KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIID 295 + + + + ++ + PI + F V I++AL +V+L SGGY++I+ Sbjct: 228 AKRVRSYLQGWNKGQMPPGVVVDAHREPTPILEYFRVNAVIRQALRPRVDLPSGGYIVIE 287 Query: 296 QTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 TEA+T +D+N+G+F +T+ TN EA IARQLRLRN+ G+I++DFIDM++ Sbjct: 288 PTEALTVIDVNSGSFTQSATSRETVLWTNCEAATEIARQLRLRNIAGVIVVDFIDMDSRR 347 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 + VL +ALS D+ + V S LGLVE+TRKR +S+ + + CPTC G G + Sbjct: 348 DQLLVLEHFNKALSSDKARPQVVQLSELGLVELTRKRQGQSLYEIFGHSCPTCEGLGILA 407 >UniRef50_A7H8A5 Ribonuclease, Rne/Rng family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H8A5_ANADF Length = 740 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 179/405 (44%), Positives = 267/405 (65%) Query: 83 EEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVS 142 E++ ++I +L+++GQ+++VQV KDP+GTKGAR+T+ I+LP R+LVFMP H+G+S Sbjct: 290 REKRSKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFMPTVDHIGIS 349 Query: 143 QRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKR 202 +RIE +SER RL+++V + GFI+RT AE V +L +D +L +VW +++ K + Sbjct: 350 RRIEKDSERRRLREIVDRMRPDGTGFIVRTVAENVEAGKLEADIRFLIQVWNEIIRTKDK 409 Query: 203 PQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTG 262 L+G+L L R RD A++ ++ +D R YE +L F E P + S++E+Y G Sbjct: 410 VSAPALLHGDLDLILRATRDLFTADVGKLVIDDRDEYERILRFVHEQAPHLESQIEYYRG 469 Query: 263 RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFN 322 +PIFD + +E E++RA +RKV LKSGGY+I+DQ EA+T +D+N+G +VG +NL++TI Sbjct: 470 EEPIFDAYGIEQELKRASQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGKKNLEETITK 529 Query: 323 TNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSA 382 N+EA + I QLRLRN+GGIIIIDFIDM+ +R +V +L+ AL +D+ KT+V S Sbjct: 530 INVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKAKTNVLKISE 589 Query: 383 LGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLV 442 LGLVEMTRKR RES+ V+ C C G+G +K+ T+ YEI REI R + +V Sbjct: 590 LGLVEMTRKRVRESVTRVMNEPCSYCEGKGHLKSKITITYEIFREIRREAVHFPEPVLVV 649 Query: 443 YASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 P VA L+G E L + K ++V+ + Y+QEQFD+ Sbjct: 650 NCHPEVARILQGSEREELRYLMDRFNKTIQVKPQSGYHQEQFDIY 694 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 46/90 (51%), Positives = 60/90 (66%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 + L++N +ETRVA ++ + E ++ER+ +GIVGNIYKGRV RVLPGMQAAFVDIG Sbjct: 4 NSILVINAAGAETRVALVENNTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIG 63 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVR 91 LDKAAFL+ D+ E E + R Sbjct: 64 LDKAAFLYVGDVYGDPEFSEEFELTEGEHR 93 >UniRef50_Q2G5W8 Ribonuclease E n=8 Tax=cellular organisms RepID=Q2G5W8_NOVAD Length = 935 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 129/404 (31%), Positives = 214/404 (52%), Gaps = 2/404 (0%) Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 + + + I +++++ Q L+VQVVK+ G KGA LTT ++L RY V MP Sbjct: 191 KEADELRAKRMALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMP 250 Query: 135 GAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRV 192 +S G+S++I S S+R+RLK +++E I+RTA + E+ D YL R+ Sbjct: 251 NSSHGGGISRKINSASDRKRLKTIISELELPRSMSCIVRTAGLQRTKPEIKRDFDYLARL 310 Query: 193 WTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE 252 W ++ ER + ++ + L +R +RD + +++ + V+ Y A +F +P Sbjct: 311 WDEIRERTMKSVAPALIHSDSDLIKRAIRDIYNRDIEEVVVEGEHGYRAAKDFMKLLMPS 370 Query: 253 MTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG 312 +++ Y P+F + E+++ + V+LKSGGYL+I+ TEA+ ++DIN+G Sbjct: 371 HAKRVKAYADPVPLFQRYGAEDQLTAMYDPVVQLKSGGYLVINPTEALVSIDINSGRSTK 430 Query: 313 HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 ++ T TN+EA + IARQLRLR++ G+++IDFIDM + R+V +++ AL DR Sbjct: 431 EHGIEQTAVATNLEAAREIARQLRLRDMAGLVVIDFIDMEYGSNIRKVEKAMKDALKNDR 490 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVH 432 + V S GL+EM+R+R R + CP C G G V+T + +R I Sbjct: 491 ARIQVGRISGFGLMEMSRQRLRTGVLEATTRACPHCDGSGLVRTASSAGLSALRLIEDEA 550 Query: 433 HAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIE 476 + +YAS A + + LAE+E G V+V E Sbjct: 551 AKGKGNVVTLYASQEAAVYVLNAKRADLAEIEERYGVTVEVIPE 594 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT +L++ ETRVA + G ++E E + I GNIY +V+RV P +QAAFVD Sbjct: 1 MTTRMLIDARHQEETRVAVLKGNRIEEFDFESADHKQIKGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQ 85 G ++ FL S+I P + E++ Sbjct: 61 FGGNRHGFLAFSEIHPDYYQIPKEDR 86 >UniRef50_C7LYB0 Ribonuclease, Rne/Rng family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYB0_ACIFD Length = 457 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 166/425 (39%), Positives = 248/425 (58%), Gaps = 10/425 (2%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREA--RRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++ V+V T VA ++G L + + R + +VGNIY GRV VLPGM+AAF+DIG Sbjct: 38 QMAVHVHGDVTHVAILEGRSLIQHAVSRASDTETSVVGNIYLGRVVNVLPGMEAAFIDIG 97 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 K A L+ D+ E + G I +L+R Q ++ Q VK+P+ KGARLT Sbjct: 98 TAKNAVLYRGDVRYEREDLEGLGDGA----RIEQLLRPKQVIVCQAVKNPIAHKGARLTQ 153 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 +++LP R+ V +PG VG+S+R+ + ER RL+ +V + E G I+RTAAEG AE Sbjct: 154 EVSLPGRFAVLVPGQRSVGISKRL-PDQERRRLRGLVEDLVPEGFGVILRTAAEGATRAE 212 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D L +W ++ E + LY E A RV+R+ E + +D R YE Sbjct: 213 LERDITQLVGMWQRIDELARTEHAPALLYQEPPAAVRVIREEFSQEFRSVAIDDRALYED 272 Query: 242 LLEFTSEYIPEMTSKLEHYTGR---QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + + PE+ ++E+Y PIF + V++++ +ALER V L SGG L+ID+ E Sbjct: 273 VARYVQTISPELADRVEYYDAEAEGVPIFQRYHVQHQLAKALERTVWLPSGGSLVIDRAE 332 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +D+NT VG +L++TI N+EA + IARQLRLR++GGII+ID +DM + +R Sbjct: 333 ALTVIDVNTARNVGAVSLEETIHRNNLEAVEEIARQLRLRDIGGIIVIDVVDMVDPQNRD 392 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V+ + AL++D+ +T V S LGL++MTR+R E + L + CPTCHG+G V + Sbjct: 393 DVMRAFRAALARDKTRTHVYDMSPLGLIQMTRQRISEGLVESLSSTCPTCHGQGYVLDED 452 Query: 419 TVCYE 423 V Sbjct: 453 VVASR 457 >UniRef50_Q31PW1 Ribonuclease, Rne/Rng family n=19 Tax=Cyanobacteria RepID=Q31PW1_SYNE7 Length = 808 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 155/424 (36%), Positives = 238/424 (56%), Gaps = 22/424 (5%) Query: 1 MTAELLVNVTPSETRVA-YIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++++ R+A ++E + + + +G+IY G V VLPG+ AAFV+ Sbjct: 55 MPKQIVIAEQH---RIAAVFAEDQIEEFIVAKGTHQ--IGDIYLGVVENVLPGIDAAFVN 109 Query: 60 IGL-DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 IG +K F+H +D+ P + + + I+EL+ Q ++VQV+K+P +KG R Sbjct: 110 IGDSEKNGFIHVTDLGPL--------RLRRSAGAITELLAPQQKVLVQVMKEPTSSKGPR 161 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 LT +I+LP RYLV MP +S V +S+RI SESER RL+ + G ++RT A+G+ Sbjct: 162 LTGNISLPGRYLVLMPYSSGVSLSRRIMSESERNRLRALSVLIKPAGMGLLVRTEADGIA 221 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 E + D L+R W + ++ L + QRVLRD D ++RI VDS Sbjct: 222 EELIIEDLESLQRQWEQTLQLADSTPAPALLTRDDDFIQRVLRDMYDEGVNRIVVDSHTG 281 Query: 239 YEALLEFTSEY-----IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLI 293 + + + S + P + +E Y R I D F V I+ AL+ +V+L SGGY+I Sbjct: 282 LKRVKQHLSAWGAGEIAPGLL--IEQYRDRSSILDYFRVNAAIREALKPRVDLPSGGYVI 339 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 I++TEA+T VD+N+G+F +T+ TN EA IARQLRLRN+ G+II+DFIDM++ Sbjct: 340 IEKTEALTVVDVNSGSFTRSATARETVLWTNCEAAAEIARQLRLRNIAGVIIVDFIDMDS 399 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGT 413 + +VL +AL D+ + ++ S LGLVE+TRKR ++I + C TC G G Sbjct: 400 RRDQLQVLEHFTRALRHDKSRPQISQLSELGLVELTRKRQGQNIYELFSTPCTTCGGLGH 459 Query: 414 VKTV 417 V + Sbjct: 460 VAHL 463 >UniRef50_Q2S597 Ribonuclease, Rne/Rng family subfamily n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S597_SALRD Length = 596 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 149/418 (35%), Positives = 247/418 (59%), Gaps = 15/418 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ E++ NV +TR+A ++ G L E++IE + +GN+Y G++ +V+P +QAAFVDI Sbjct: 1 MSKEIVFNVGNEQTRIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAAFVDI 60 Query: 61 GLDKAAFLHASDI--------------MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQ 106 G ++ AFLH SD+ P E + + K+ + S+L+ +GQ ++VQ Sbjct: 61 GQEQDAFLHFSDLSDNLPYLLDFLGLEAPTVEAIDVPKGKKDWDKRPSDLLNRGQTILVQ 120 Query: 107 VVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG 166 V K+P+ KG+R++TDI+L R+LV +P ++V VS++I + ER RL+ + + + Sbjct: 121 VTKEPISNKGSRISTDISLAGRFLVLVPLQNYVAVSRKITDDEERRRLESLASSLVPDGV 180 Query: 167 GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKK-RPQTRYQLYGELALAQRVLRDFAD 225 G I+RT A+ L D L W +V +R K +P ++ ++ +A ++RD Sbjct: 181 GVIVRTVAQDRDAKSLDKDMKLLMERWRRVEKRLKDKPSPPELVHEDVDMASSIVRDEFS 240 Query: 226 AELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVE 285 E DRI VD Y ++ + P++ ++E + G QP+F+ +++ RA + +VE Sbjct: 241 EEYDRILVDHEGLYSSIQSYVRAVGPQLVDRVELHEGDQPVFESVGIQHGADRAFKDRVE 300 Query: 286 LKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIII 345 L SGGYL I++TEAM VD+N+G ++ + N N+EA + IARQ+RLR+LGGII+ Sbjct: 301 LPSGGYLFIEKTEAMHVVDVNSGRSGKGKSQAENSLNVNLEAARVIARQIRLRDLGGIIV 360 Query: 346 IDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 +DFID+ +ED +++V +++ +DR T V S GLVE+TR+R R SI + Sbjct: 361 VDFIDLRDEDDKKKVYDEVKKGFEEDRAVTKVLPMSDFGLVEITRQRLRPSITTTFSS 418 >UniRef50_A5WCI8 RNAse G n=4 Tax=Moraxellaceae RepID=A5WCI8_PSYWF Length = 613 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 199/411 (48%), Positives = 282/411 (68%), Gaps = 8/411 (1%) Query: 86 KQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRI 145 + I + +GQ ++VQV KD LGTKGARLTT+I+LPSRYLV++P + H+G+SQRI Sbjct: 202 EPPRHELIQYRLHEGQKILVQVTKDQLGTKGARLTTNISLPSRYLVYLPSSEHIGISQRI 261 Query: 146 ESESERERLKK---VVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKR 202 ++E ER RLK + + + GG I RTAAE V A+L D YL ++W + RK+ Sbjct: 262 DNEEERHRLKTELGALMQTVNLTGGLIARTAAERVPVAKLEEDIYYLVQLWRTIQARKEA 321 Query: 203 P----QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLE 258 Q+ +Y EL+L R +RD + +++ VD Y + +F E++P + ++ Sbjct: 322 SAGSGQSAVLIYQELSLPLRSIRDLVHPDTEKVIVDHEGMYNEVRQFAKEFVPFIYPRIL 381 Query: 259 HYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDD 318 Y+G QP+FD+ VE +++ AL+R+V+LKSGGYLIIDQTEAMTT+D+NTG+FVG R+L+D Sbjct: 382 PYSGEQPLFDVHRVEEDLRDALKRRVDLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSLED 441 Query: 319 TIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVN 378 T++ TN+EAT AIARQLRLRNLGGIII+DFIDM + H+ VL +L+ LS+D KT + Sbjct: 442 TVYKTNLEATHAIARQLRLRNLGGIIILDFIDMLEQQHKDDVLENLQYQLSQDYAKTKIT 501 Query: 379 GFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDS- 437 S LGLVEMTRKRTRES+E LC C TC G+G +KT ETVC+EI REI+R Y+S Sbjct: 502 QVSELGLVEMTRKRTRESLEQQLCEPCKTCEGKGFIKTAETVCFEIFREIMRCARTYNSP 561 Query: 438 DRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 +F V A +V + L E+ ++A++E +G+ + ++E LY QEQ+D+V+ Sbjct: 562 KKFTVVAHASVIDLLLSSEADTVADLEYLLGRVITFEVENLYTQEQYDIVL 612 Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats. Identities = 43/95 (45%), Positives = 62/95 (65%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ ELL+NV+P E+RVA +D G++ E++IER + G+VGNIY G V RVLPGMQAAFV+I Sbjct: 1 MSEELLINVSPMESRVAVLDNGVVSEVYIERHNKLGLVGNIYLGTVVRVLPGMQAAFVEI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISE 95 G + AFLH +D+ ++ + + Sbjct: 61 GQSRTAFLHVNDMRRIARPAPTADKAPEIRHNAKQ 95 >UniRef50_Q0C4E1 Ribonuclease, Rne/Rng family n=2 Tax=Hyphomonadaceae RepID=Q0C4E1_HYPNA Length = 909 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 123/400 (30%), Positives = 205/400 (51%), Gaps = 2/400 (0%) Query: 89 TVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGAS-HVGVSQRIES 147 I E++R+ Q ++VQVVK+ G KGA LTT ++L RY V MP G+S++I + Sbjct: 177 KRYKIQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTPRGGGISRKIVN 236 Query: 148 ESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTR 206 ++R+RLK +V+E E G I+RTA + E+ D YL ++W +++E+ + Sbjct: 237 SADRKRLKSIVSELDVPEGQGLIVRTAGAKRTKIEIKRDYDYLSKLWEQIVEKTLSSEAP 296 Query: 207 YQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPI 266 + E L R +RD D E++ + V Y + +P K++ + P+ Sbjct: 297 ALINAEGGLVHRAMRDMFDKEIEEVWVQGDEAYREAKDLAKIIMPSQAKKVQQWREEDPL 356 Query: 267 FDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIE 326 + VEN++ V+LKSGGYL+I+QTEA+ +D+N+G RN++ T TN+E Sbjct: 357 YVAEAVENQLDSIYSPVVQLKSGGYLVINQTEALVAIDVNSGKSTRERNIEQTAVRTNLE 416 Query: 327 ATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLV 386 A + RQ+RLR+L G+I+IDFIDM + R V L++ L DR + S GL+ Sbjct: 417 AAEEACRQMRLRDLAGLIVIDFIDMEENKNNRAVEKRLKECLKVDRARVQHGRISQFGLM 476 Query: 387 EMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASP 446 E++R+R R+ + + C C+G G +++ + +++R I V A Sbjct: 477 EISRQRRRQGVLQATSDPCSACNGTGRRRSIPSAALQLIRAIEARAATGGLKGIGVKAPT 536 Query: 447 AVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 VA + + +L E+E G + + F + Sbjct: 537 DVALYILNNKREALIEIERLAGFAISIHSSEDMLPGDFQI 576 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ +L++ P ETRVA ++ G + + E + GNIY +V+RV P +QAAFV+ Sbjct: 1 MSRLMLIDAAHPEETRVAIVNNGQVDDFDFEATGNEQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G ++ FL S+I P + +++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQLPAADRE 87 >UniRef50_A8LRP5 Ribonuclease n=35 Tax=Rhodobacterales RepID=A8LRP5_DINSH Length = 1026 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 125/398 (31%), Positives = 205/398 (51%), Gaps = 2/398 (0%) Query: 91 RDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESES 149 I E+++ Q L+VQVVK+ G KGA LTT ++L RY V MP A G+S++I + Sbjct: 356 YKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAV 415 Query: 150 ERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQ 208 +R++LK++ +E G I+RTA + E+ D YLKR+W ++ + + Sbjct: 416 DRKKLKEIASEIEVPRGAGLIVRTAGAKRTKTEIKRDYDYLKRLWEQIRDLTLKSIAPAP 475 Query: 209 LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFD 268 +Y E L +R +RD ++D + V+ Y +F +P ++ Y P+F Sbjct: 476 IYEEGNLIKRSIRDLYSRDIDEVLVEGEEGYRVAKDFMKMLMPSHAKNVKLYNENLPLFA 535 Query: 269 LFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEAT 328 + VE+ + V+LKSGGYL+I TEA+ +D+N+G ++++T TN+EA Sbjct: 536 RYQVESYLAGMFNPTVQLKSGGYLVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAA 595 Query: 329 QAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEM 388 + +ARQ+RLR+L G+I+IDFIDM + V L+ L DR + V S GL+EM Sbjct: 596 EEVARQVRLRDLAGLIVIDFIDMEERRNNTAVEKRLKDKLKTDRARIQVGRISGFGLLEM 655 Query: 389 TRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAV 448 +R+R R + + C CHG G +++ ++ I+R + LV A V Sbjct: 656 SRQRLRPGMLEITTQPCNHCHGTGLIRSDNSLALSIVRALEEEGMRRRVREVLVKAPVNV 715 Query: 449 AEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 L E+ +A +E G V+++ + F + Sbjct: 716 INYLFNEKREHIALIEGRYGLSVRLEASNELSGADFTI 753 Score = 107 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T ETRV +DG ++E E +R + GNIY +V+RV P +QAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGTKVEEFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRD 92 G ++ FL S+I P + +++ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREALLAEE 93 >UniRef50_B0K422 Ribonuclease, Rne/Rng family n=12 Tax=Thermoanaerobacterales RepID=B0K422_THEPX Length = 474 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 170/484 (35%), Positives = 279/484 (57%), Gaps = 14/484 (2%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 L++++ + +++A ++ G L+E H E+ + I+GNIYKG++ VL GMQAAFVDIG+ Sbjct: 2 KRLILDIDENLSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDIGI 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K AFL D++ E + + I+++++ GQ +MVQV K+ +G K R+T + Sbjct: 62 GKNAFLFFDDVLFQQENLP---------KSITQVLKPGQPIMVQVSKEAVGMKNPRVTAN 112 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I+LP +Y+V MP ++G+S RIE E ER+RL+++V + E G I+RTAA E ++ Sbjct: 113 ISLPGKYVVLMPNVDYIGISHRIEEEVERKRLQEIVKKLKPEGIGIIVRTAALEATEQQI 172 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D L R++ K+ + + +Y E A + LRD E+D I V+ + YE + Sbjct: 173 REDLEELIRLYEKIQKDFQNAPLPSLIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENI 232 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + E + + ++ + ++ + LE+KV LKSGG++IIDQTEA+T Sbjct: 233 KRYLKNVGKE---NISVTYEEGDLLGIYGADFQVDKLLEKKVWLKSGGFVIIDQTEALTV 289 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+NTG +VG +L++TI+ TN+EA + IA QL+LR++GGIIIIDFIDM NE+ +R +L Sbjct: 290 IDVNTGKYVGKSSLEETIYKTNLEAAEEIALQLKLRDIGGIIIIDFIDMKNENFKRDLLE 349 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 ++ L KDR K +V G++ LGLVEMTRKR R + L +CP C G G V + E + Sbjct: 350 FFKRELQKDRTKCTVLGYTQLGLVEMTRKRVRSQVGSYLKEKCPICEGEGMVYSTEYIYR 409 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 + I RV ++ + + + V + E + + +++ ++ Sbjct: 410 RLRNNIERVLRHVNARKIYIKGNDKVVKI--ASEKGIIKFYKEKFNVDLELVVDNNKKYG 467 Query: 483 QFDV 486 F++ Sbjct: 468 HFEI 471 >UniRef50_C1PAJ8 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PAJ8_BACCO Length = 492 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 156/488 (31%), Positives = 258/488 (52%), Gaps = 14/488 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +++NV E R A I+ G + I I + VGNIY G+V+ V PG+ AAF+DI Sbjct: 1 MDRSIIINVKTREKRYAVIENGKVSGIRIRQPGDAAKVGNIYLGKVADVKPGINAAFIDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G + +LH S + + + IS + GQ +MVQV KD G KG LT Sbjct: 61 GGIRHGYLHISRLPAFANS-------KNSNPTISAYLSPGQTVMVQVKKDETGQKGPLLT 113 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I L +V++P + VS++ +++R R + V + + Q G I+RTAA G Sbjct: 114 GIIELSGEQIVYLPEGKYTAVSKK-ADDADRNRWRNRVRKALEPQEGIIVRTAAIHAGGD 172 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 + L+ + ++E+ + + L+ + + + R+ + + VD Sbjct: 173 GWRDELKCLRLRYKCLLEKAAQLKAPAVLHEKSTVEAEIFRELVRLKSGTVIVDDAEALA 232 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 L + PE+ E Y+G+Q IF + ++ ++ AL+R V L++G YL+ID+TEA+ Sbjct: 233 RLKALLAG-RPELDWSFELYSGKQNIFTRYRIDRTLEDALKRVVWLENGAYLVIDETEAL 291 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG + G + +T+ TN+ A + I RQL+LR+ GGII++DFIDM ++ R +V Sbjct: 292 TIIDVNTGKYTGTTDQAETVLKTNLLAAKEIGRQLKLRDYGGIILVDFIDMQRDEQRAQV 351 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 LE+ L D +T + GF+ LG+++MTRK+TR+S+ L + CP C G G +++ ET+ Sbjct: 352 RAVLEKELENDEKQTRITGFTELGILQMTRKKTRKSLPEALLSVCPVCGGSGKIESPETL 411 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQI----E 476 + + RE+ +A D + L+ + V + GE L +E +G ++ I Sbjct: 412 AFRLERELWEAPYA-DYEAVLIECTQDVKDCFCGETDVHLKRLENLLGMKLIFHITRDPH 470 Query: 477 PLYNQEQF 484 P Y QF Sbjct: 471 PFYAIRQF 478 >UniRef50_C5CEM0 Ribonuclease, Rne/Rng family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEM0_KOSOT Length = 481 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 152/472 (32%), Positives = 254/472 (53%), Gaps = 23/472 (4%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 T ++ + E R+A +D G +QE+ E +GNIY G++ V+P ++AAFV+IG Sbjct: 9 TQAIVFSSLEDEVRIAILDEGKIQEVFFEEMDNESYMGNIYLGKIENVVPSLEAAFVNIG 68 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + K FL D ++ + +G+ ++VQV KDP+G+KG +LT Sbjct: 69 IGKNGFLRFKDT------------------RNNQKLEKGKKVLVQVKKDPIGSKGPQLTL 110 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I++P R LV+MP + HVG+S++I ++ERERL + + G I RTAA GVGE Sbjct: 111 KISIPGRCLVYMPFSKHVGISKKITDQAERERLISIAKGIIENDEGIIFRTAANGVGEDT 170 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L + L+ +W K+ E+ +R + LY E +L + +LR+ ++ I VDS + Sbjct: 171 LREELENLRTIWKKINEKFRRARKPQILYEEPSLVEYILRERLTEDVKEIVVDSEDLWHD 230 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 ++ S++ + + F + +++ R V L +GG + ID+TEAMT Sbjct: 231 VVAGISKFKSGFKPIVRYVEEDA--FLHEGIYEKMKVLYTRVVPLPNGGNIFIDKTEAMT 288 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+N+ + ++ + NTN+EA IARQLRLRN+GGII+IDFIDM +E R++V+ Sbjct: 289 VIDVNSASNTHGSDVSEMSLNTNLEAAVEIARQLRLRNIGGIIVIDFIDMKSEADRKKVI 348 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 L + L KD+ + + GF+ LGL+EMTRKR+ +I + + CP C G G +++ + Sbjct: 349 SLLSEELKKDKAHSLILGFTRLGLLEMTRKRSTATINSRIYSTCPICRGTGQIESPKITY 408 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKV 473 ++ ++ R+ V ++ L E L+ +++KV Sbjct: 409 QRLVSDLQRLFKDKKIKSATVQVYQNLSGILTPEVQKQLS---KQFKREIKV 457 >UniRef50_P72656 Ribonuclease E homolog n=10 Tax=Cyanobacteria RepID=RNE_SYNY3 Length = 674 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 141/418 (33%), Positives = 226/418 (54%), Gaps = 16/418 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++++ A +QE+ + + VG+IY G V +LP + AAF++I Sbjct: 1 MPKQIVIAEKHQ--VAAVFWKDQIQELVVSTGS--QQVGDIYLGLVDNILPSIDAAFINI 56 Query: 61 GL-DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G +K F+H SD+ P + + T ISEL+ Q ++VQV+K+P G KG RL Sbjct: 57 GDTEKNGFIHVSDLGP--------VRLRRTAGSISELLSPQQRVLVQVMKEPTGNKGPRL 108 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T +I++P RY+V MP V +S+RI E ER RL+ + G ++RT AE V E Sbjct: 109 TGNISMPGRYMVLMPYGRGVNLSRRINREEERSRLRALAVLIKPPGMGLLVRTEAEDVPE 168 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + D L++ W V ++ L + +RVLRD +E++RI VD+ Sbjct: 169 DAIIEDLENLQKQWELVQQQAMTRSAPMLLDRDDDFIKRVLRDMYSSEVNRIVVDTPAGM 228 Query: 240 EALLEFTSEYIPEMTSK---LEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 + + + + + ++ + I + F V I+ AL+ +V+L SGGY+II+ Sbjct: 229 KRIKQQLMNWDQGRLPEGVLIDCHRESLSILEYFRVNATIREALKPRVDLPSGGYIIIEP 288 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+T +D+N+G+F N +T+ TN EA IARQL+LRN+GG+IIIDFIDM++ Sbjct: 289 TEALTVIDVNSGSFTHSANSRETVLWTNYEAATEIARQLKLRNIGGVIIIDFIDMDSHKD 348 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 + ++L + L D+ + + + LGLVE+TRKR +++ + CP C G G + Sbjct: 349 QLQLLEHFNRCLETDKARPQIAQLTELGLVELTRKRQGQNLYELFGQPCPECGGLGHL 406 >UniRef50_B1I4P9 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4P9_DESAP Length = 416 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 179/414 (43%), Positives = 265/414 (64%), Gaps = 7/414 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E++V+ + TRVA ++ + E++IE + +VG+I+KG V VLPG++AAFV++G Sbjct: 3 KREIIVSTRDNATRVALLENRVPMEVYIEPDEEICLVGSIFKGVVENVLPGIEAAFVNVG 62 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 LD+ AFL+ +D++P + + + I +L+ GQ+++VQV KDPLG KG R+T Sbjct: 63 LDRNAFLYVNDVLPQSA------RADQSAAGIRDLLHPGQEVIVQVAKDPLGNKGPRVTM 116 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 + LP Y V MP +HVG+S+RIE ESERERL++VV E G I+RTAA G+ Sbjct: 117 RVNLPGHYTVLMPTVNHVGISRRIEDESERERLREVVHRARPEGMGAIVRTAARGIAAEV 176 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 LA D L+++W + +R+ LY E L R++RD E++R+ +DS +Y Sbjct: 177 LADDIRELEKLWRDIQKREAGAAAPSLLYRECGLLPRIIRDLFTEEIERLVLDSFTSYAR 236 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 L P++ S++ + + IF+ ++V EI +AL+RK L+ GGYLI DQ EA+T Sbjct: 237 SLTILDTVNPQLKSRV-FWEDKPDIFEAYNVNQEINKALQRKTWLRCGGYLIFDQAEALT 295 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+NTG F G +L+DT++ TN+EA IARQLRLRNLGGIIIIDFIDM++E+HR RVL Sbjct: 296 VIDVNTGRFTGRVDLEDTVYKTNLEAAVEIARQLRLRNLGGIIIIDFIDMSHEEHRNRVL 355 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 L + + KDR +T + G + LGLVE+TRK+ S+ +L CP C G G ++ Sbjct: 356 EVLGEEIKKDRRRTHIMGLTRLGLVELTRKKVHPSLAELLLTNCPQCGGTGKIQ 409 >UniRef50_D2LS23 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LS23_BACS4 Length = 456 Score = 471 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 156/446 (34%), Positives = 258/446 (57%), Gaps = 8/446 (1%) Query: 42 YKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQ 101 + GRV ++PGM+AAFV+IG DK FL+ ++++ + + +++ I+ ++++GQ Sbjct: 2 FIGRVEDIVPGMEAAFVNIGADKNGFLYRNELI-AYDTLKDDKEPDVKQPTIASMLKEGQ 60 Query: 102 DLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY 161 ++VQV K+ +G KG RLT I+LP +Y+V++P ++V VS++ +E R+ ++ E+ Sbjct: 61 SIIVQVTKEAVGAKGVRLTEKISLPGKYIVYLPYGNYVAVSKK-MNEENRKGWREKAREW 119 Query: 162 CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 221 +++ G IIRT AE E+ + L+ +++++ ++ L + +L RV R Sbjct: 120 IEDREGIIIRTNAEDASHEEIYHEFTLLRHQHQQMLQQAEKVNVPNVLLNQSSLISRVQR 179 Query: 222 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 281 D+ + I VD +YE LL + Y ++ IF +D+E +++AL Sbjct: 180 DYLTNKNSEIVVDHFESYEQLL-----NSSLEGCNIHLYQEKEDIFSYYDIEKHLEKALH 234 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLG 341 KV LKSGG+LII++TEA+T +D+NTG F G NL DT+ TNIEA A+A+QLRLRN+G Sbjct: 235 EKVWLKSGGFLIIEKTEALTVIDVNTGKFTGKHNLRDTVVKTNIEAAYAVAQQLRLRNIG 294 Query: 342 GIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 GII+IDFIDM E ++ VL +L++A DR T+V GF+ GLVEMTRK+ R+ + ++ Sbjct: 295 GIILIDFIDMKVESDQKSVLKALKEATKNDRTLTNVAGFTNFGLVEMTRKKARKPLHDIM 354 Query: 402 CNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLA 461 C C G G V ++++ + RE+ + D D LV AV E+L + L Sbjct: 355 MESCSVCKGTGQVLSLKSKIAHLEREVFAL-RYIDQDAILVEVDSAVYESLLQNNNDLLT 413 Query: 462 EVEIFVGKQVKVQIEPLYNQEQFDVV 487 +E V K + + + ++ Sbjct: 414 SMEQVVNKTIYLVNGENGHLPTIRLI 439 >UniRef50_Q5WES2 Ribonuclease G n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WES2_BACSK Length = 497 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 152/481 (31%), Positives = 248/481 (51%), Gaps = 11/481 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +++ ++ ++ + E E R +VG+++ G+V RVLPGM+AAFVDI Sbjct: 1 MEQSIVITKGINKREAVLLENNEVVEWFFESNDRPQMVGSVFLGKVERVLPGMEAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G K FLH +++ + +KQ + IS+ V G + VQV K+ KG RL+ Sbjct: 61 GTGKNGFLHRDELLAFHLDPSDLTEKQ--TKSISQFVSPGDTIAVQVTKEGTNEKGPRLS 118 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 +++P +Y+V+MP ++V VS+RIESE R L + G I+RTAA Sbjct: 119 GVVSIPGKYVVYMPEGAYVAVSRRIESEHVRASLHTALENKLQHNEGAIVRTAAANAPLE 178 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 E+ D +L+ +W K + ++ Q +Y L + +L + + ++ + VD Y Sbjct: 179 EVERDLVFLRTLWQKTLRHQE--QAPALIYRAATLVETLLLGYLNEQVTEVVVDDIDDYR 236 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + + K++ Y + F + ++ +A +R++ LK+G +L+ID+TEAM Sbjct: 237 LMKQLVQT---DDKDKVKLYAHKGSSFQSARISAQLAKAQKRRIWLKNGAFLVIDETEAM 293 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG F G +T+ N A A+Q+RLRN GII+IDFIDM ++ R V Sbjct: 294 TVIDVNTGKFTGKFAQSETVLAVNKLAAVEAAKQIRLRNCSGIIVIDFIDMQSDSDRLAV 353 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 ++E+AL KDRVKTSV GF+ LGL+EMTRK+TR S+ + EC C G G V Sbjct: 354 QQTMERALKKDRVKTSVRGFTKLGLLEMTRKKTRLSMAKTVTVECKACAGTGAVLAGHGH 413 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 + + R I+ ++ +V + + L G +E G + + + Sbjct: 414 AFMLERLILEE----QAEALVVAVTAELRSLLVGVGDLYKERLESLAGVTLFLVTDNSLP 469 Query: 481 Q 481 Q Sbjct: 470 Q 470 >UniRef50_C3W9J7 Ribonuclease G and E n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3W9J7_FUSMR Length = 488 Score = 470 bits (1209), Expect = e-131, Method: Composition-based stats. Identities = 181/489 (37%), Positives = 295/489 (60%), Gaps = 5/489 (1%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++++N+ ++R A I+ + E+ IERE R I NIYKG+V+ VLPGM++AFV+IGL Sbjct: 2 NQIVINIDEFQSRAAIIEDEKVVEVLIEREEERRINANIYKGKVANVLPGMESAFVNIGL 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K AFL+ +D+ E + + R I +++ G +++VQV+ +P GTKGAR+TT Sbjct: 62 EKNAFLYVNDLREFEEKYL--DGICNSERPIEDILTVGDEVVVQVLSEPRGTKGARVTTH 119 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 T+P +YLV MP +H+ +S++I+ E ER RL+++V + E G IIRTAA+G Sbjct: 120 YTIPGKYLVLMPNNNHIAISKKIKEEEERNRLEEIVRDLKPENMGVIIRTAAQGKSIFHF 179 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + YL + W + ++ + LY + + VLRD E+D + +D+ Y + Sbjct: 180 EREMEYLVKKWEDIEKKTSTAKIGEVLYKDNGIVATVLRDIFSNEIDELVIDNEEVYWEV 239 Query: 243 LEFTSEYI-PEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +++ + + + +K++ Y + IF+ + +E EI+ AL+ +V L+ GGYL+I +TEA+ Sbjct: 240 IDYINAFSEKTLKTKIKLYNDDEIGIFERYGIEKEIENALKEEVRLECGGYLVIQKTEAL 299 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 ++D+NTG G NL+ T+ NTN+EA + I RQLRLRNLGGIIIIDFIDM E+ + +V Sbjct: 300 ISIDVNTGKNTGSYNLEQTVLNTNLEAAREIPRQLRLRNLGGIIIIDFIDMRLEEDKLKV 359 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L +LEQ LSKDR+K ++ F+ LGL+EMTRKRT + + + CP C G G +K+ ++V Sbjct: 360 LEALEQNLSKDRIKNNIVHFTDLGLIEMTRKRTGKPLYNYFQERCPMCEGTGKIKSKDSV 419 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 +E+M EI D + V S + A K + + K++ ++ N Sbjct: 420 IHEMMTEIKECAKDEDINIIKVILSKKLKIAFKELYFDFVEDFVKNRKKKIILEENSQ-N 478 Query: 481 QEQFDVVMM 489 +++++M Sbjct: 479 DYSYEIILM 487 >UniRef50_Q0FAK9 Ribonuclease, Rne/Rng family protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FAK9_9RHOB Length = 870 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 120/413 (29%), Positives = 208/413 (50%), Gaps = 2/413 (0%) Query: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 E + + I E+++ Q L++QVVK+ G KGA LTT ++L RY V MP Sbjct: 217 DVEEEVRPRKPRPRRYKIQEVIKVRQILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPN 276 Query: 136 -ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 A G+S++I + +R+++K++ +E + G I+RTA ++ D YL R W Sbjct: 277 TARGGGISRKITNVQDRKKIKEITSELDVPKGAGLIVRTAGAKRNRDDILRDYEYLMRQW 336 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 T++ + Q+Y E + +R +RD + ++D I V+ +EA + + +P Sbjct: 337 TQIRDITLESIAPTQIYAEGDIIKRSIRDLYNNDIDEIIVEGERGFEAAKAYMTMLMPSH 396 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 +++ Y + P++ + VEN + V+LKSGGY++I TEA+ VD+N+G Sbjct: 397 VKRVKQYKNKMPLYARYQVENYLGGMFNPTVQLKSGGYIVIGVTEALVAVDVNSGKATKE 456 Query: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 +++ T TN+EA +ARQLRLR+L G+I+IDFIDM + V ++ L DR Sbjct: 457 SSIEKTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMEERRNNIAVEKRMKDKLKSDRA 516 Query: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 + V S GL+EM+R+R R + ECP C G G V++ ++ I+REI Sbjct: 517 RIQVGRISGFGLMEMSRQRLRPGMLEATTKECPHCLGTGLVRSDDSQALSILREIEEEAI 576 Query: 434 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + ++ L + ++A +E + ++ +++ Sbjct: 577 RKRTKEIQATVPVGISNYLLNHKRENIALIESQYAISIIIEASASMIGTDYEL 629 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T ETRV ++G + E E +R + GNIY +V+RV P +QAAFVD Sbjct: 1 MPKKMLIDATHAEETRVVVVEGNKVDEFDFESLNKRQLSGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRD 92 G ++ FL ++I P + +++ + Sbjct: 61 YGGNRHGFLSFAEIHPDYYQIPVADREALIAEE 93 >UniRef50_A0L8J1 Ribonuclease E n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J1_MAGSM Length = 984 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 127/381 (33%), Positives = 209/381 (54%), Gaps = 2/381 (0%) Query: 107 VVKDPLGTKGARLTTDITLPSRYLVFMP-GASHVGVSQRIESESERERLKKVVAEY-CDE 164 VVK+ GTKGA LTT+I+L RY V +P + G+S++I R+ LK ++ E + Sbjct: 185 VVKEARGTKGASLTTNISLAGRYTVLLPENSGGGGISRKIMDNQARKALKTMLTEMEIPQ 244 Query: 165 QGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFA 224 + IIRTA + E+A D +YL R+W + E+ ++ T ++ E L R +RD Sbjct: 245 EVSLIIRTAGMERTKREIARDMSYLTRLWKTIQEKVEQHNTPTLIHEEGDLIIRTIRDLY 304 Query: 225 DAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKV 284 +++ I +D Y +F +P ++ Y R P+F + VE++I+ ER + Sbjct: 305 STDMEEILIDGGEAYRRGKDFMRLLMPRYVKAVQPYKDRIPLFSRYQVEHQIESMHERTI 364 Query: 285 ELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGII 344 LK+GGYL+I+ TEA+ ++DIN+G +N+++T F TN++A IARQLRLR+LGG+I Sbjct: 365 SLKAGGYLVIEPTEALVSIDINSGRSTKEKNVENTAFKTNMQAVDEIARQLRLRDLGGLI 424 Query: 345 IIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNE 404 +IDFIDM + H V L++AL DR K + S GL+E++R+R + + Sbjct: 425 VIDFIDMEEKKHNLEVEKRLKEALKGDRAKIQLGKISQFGLLELSRQRMKPAFNESNREV 484 Query: 405 CPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVE 464 CP C G GT+++VE+ + R I + + + +A VA L + + ++E Sbjct: 485 CPRCTGLGTIRSVESTAIRLFRCIEEDISSGRFSKLIYFAPADVANYLHNRKRFQMVQLE 544 Query: 465 IFVGKQVKVQIEPLYNQEQFD 485 ++ ++I+P F Sbjct: 545 QENNLELLIEIDPELQTPHFR 565 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT +LV+ T P E RVA + L ++ IE + I GNIY GRV+RV P +QAAFVD Sbjct: 1 MTKRMLVDATHPEEVRVAIVQDQRLIDLDIETCTKAQIKGNIYLGRVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQF 88 + FL +DI P + Sbjct: 61 FNDGRQGFLSVNDINPKYYPPEFRPEPDP 89 >UniRef50_Q83MU7 Ribonuclease G n=2 Tax=Tropheryma whipplei RepID=Q83MU7_TROWT Length = 549 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 160/443 (36%), Positives = 244/443 (55%), Gaps = 22/443 (4%) Query: 5 LLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +LV + S+ +V ++ GIL E ++ R A +VGNIY GRV VLPGM+AAFVDIG Sbjct: 68 MLVRGSGASDVQVGILEEGILVEYYMARGASSSLVGNIYMGRVQNVLPGMEAAFVDIGCG 127 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + A L++ + + + I VR+G ++VQV KD + KG R+T + Sbjct: 128 RNAVLYSGEAVWE----------GVKAQSIENTVREGSSVLVQVTKDAVANKGPRVTGQL 177 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELA 183 +L RYLV+ PG+ GVS+RI + SER RL+K + ++ IIRTAA G +L Sbjct: 178 SLAGRYLVYAPGSG--GVSRRI-APSERARLQKSLKAAVEDVSSLIIRTAAVGATSEQLG 234 Query: 184 SDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL 243 +DA L + + E+ + +Y E L R+LRD + + + V+ YE + Sbjct: 235 NDAKMLCEAYRAIKEKSENATAPSIIYSEPDLLIRLLRDTFNNDFKELIVEGAELYERVN 294 Query: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 + + PEM K+ + + +FD + + +I R+L RKV L SGG L++D TEAMT + Sbjct: 295 SYLQDVSPEMLGKVSK-SSEEDLFDAYRITEQIDRSLNRKVLLPSGGSLVVDHTEAMTVI 353 Query: 304 DINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 D+NTG FVG +L+ T+ + N+EA I RQ+RLR+LGGI++IDFIDM +++R V + Sbjct: 354 DVNTGKFVGTSSSLEQTVTDNNLEAVDEIVRQIRLRDLGGIVVIDFIDMLLQENRDLVYN 413 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT-----V 417 L +ALS DR + V ++LGLV+MTRK+ ++ + C C GRG V Sbjct: 414 RLLEALSLDRSRHKVAEITSLGLVQMTRKKLGVAL-EPVSELCDRCSGRGRVINPVPNKP 472 Query: 418 ETVCYEIMREIVRVHHAYDSDRF 440 +R++ + Sbjct: 473 RARKKHRLRQVNKEASDAAVRII 495 >UniRef50_Q89AH3 Putative truncated ribonuclease E n=22 Tax=Bacteria RepID=RNE_BUCBP Length = 410 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 140/402 (34%), Positives = 223/402 (55%), Gaps = 8/402 (1%) Query: 3 AELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N + R+A IDG L ++++E ++ NIYKG++ R+ P ++AAFVD G Sbjct: 2 RRMLINAIEIKKLRIALIDGQQLYDLNVENIDKKQRKSNIYKGKIVRIEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 K FL +I + + +++I +++GQ+ +VQ+ K+ GTKGA LTT Sbjct: 62 EKKNGFLPLKEISRNYFPNNCSNYRHLHIKNI---LKEGQECIVQIDKEERGTKGALLTT 118 Query: 122 DITLPSRYLVFMPGASHV-GVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP H+ G+S++IE +R LKK+++ E G IIRT+ G Sbjct: 119 FISLAGNYLVLMPNCPHLEGISRKIEGI-DRFHLKKIISMLMVPENMGIIIRTSGVGRSI 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D + + W + + + ++ E + R LRD+ ++ I VD+ Sbjct: 178 ETLQLDLNFRVKNWYTIKKSAEINTAPCLIHKESNIVIRTLRDYLKKDIQEIIVDNPEIL 237 Query: 240 EALLEFT-SEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 E ++ + K++ YTG P+F + +E++I L R V+L SGG +IID TE Sbjct: 238 ELARDYMFNMNCSYFEKKIKLYTGSDPLFSYYKIESQINALLRRIVKLPSGGSIIIDYTE 297 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +DIN+ N+++T FNTN EA + IARQLRLR+LGG+I+IDFIDM+ H++ Sbjct: 298 ALTAIDINSSQSTKGVNIEETAFNTNYEAVREIARQLRLRDLGGLIVIDFIDMSVLKHQK 357 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 + L Q L KDR + V S GL+EM+R+ ++ + Sbjct: 358 MIELHLHQVLQKDRARVQVGSISQFGLLEMSRQCLGSPLKKI 399 >UniRef50_D1I512 Whole genome shotgun sequence of line PN40024, scaffold_57.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1I512_VITVI Length = 934 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 150/545 (27%), Positives = 261/545 (47%), Gaps = 64/545 (11%) Query: 5 LLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N + + R+A ++ G L E+ +E ++Y G V++++P M AFV+IG+ Sbjct: 344 ILINSSICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVYLGVVTKLVPHMGGAFVNIGIQ 403 Query: 64 K----------------------------------AAFLH------ASDIMPHTECVAGE 83 FL D + Sbjct: 404 FAHDDFEEHEVEDDFDVLIKKDLNGSIVDHDSETINNFLPVELEKGFHDSQLPPLLEMKD 463 Query: 84 EQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQ 143 ++ +TV + V++G ++VQVVK+ LGTKG LT L SR+ V + + +GVS+ Sbjct: 464 SRQAYTVENKWAQVQKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTCCNRIGVSK 523 Query: 144 RIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRP 203 +I S ER RL+ + + G +RT A G EL D L W ++E K Sbjct: 524 KI-SGVERTRLRVIAKTLQPKGFGLTVRTVAAGHTLEELQKDLEGLLSTWKNIVEHAKSA 582 Query: 204 QT----------RYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 L+ + V++D+ + +++ + VDS TY + + E P++ Sbjct: 583 ALAADEGVEGAIPVILHRAMGQTLSVVQDYFNEKVESMVVDSPRTYHEVTNYLQEIAPDL 642 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGA--FV 311 ++E Y R P+FD F++E EI L ++V L +GG L+I+QTEA+ ++D+N G Sbjct: 643 CDRVELYNKRVPLFDEFNIEEEINNILSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMLG 702 Query: 312 GHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKD 371 + + I + N+ A + IAR+LRLR++GGII++DFIDM ++ ++R V +++A+ +D Sbjct: 703 NGTSQEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAVERD 762 Query: 372 RVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRV 431 R V+ S GL+E+TRKR R S+ ++ C CHG G V+ +ET +I +EI R+ Sbjct: 763 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHGTGRVEALETSFSKIEQEICRL 822 Query: 432 HHAYDSD----------RFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQ 481 + RF++ + L + LA + + + +++ + + Sbjct: 823 LAMTEEKADPENPNSWPRFILMVDRFMCNYLTSGKRTRLAILSSSLKVWILLKVARGFTR 882 Query: 482 EQFDV 486 F+V Sbjct: 883 GAFEV 887 >UniRef50_B6YQX9 Ribonuclease G n=23 Tax=Bacteroidales RepID=B6YQX9_AZOPC Length = 518 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 150/507 (29%), Positives = 266/507 (52%), Gaps = 22/507 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +EL+++V P +A ++ L E E VGNIY GRV +++PG+ AAFVDI Sbjct: 1 MISELVIDVQPQIISIAVLEDKNLVEFRKEVRDLSFSVGNIYLGRVKKMMPGLNAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDIS-------------------ELVRQGQ 101 G +K AFLH D+ + + +K F+ + I ++++QG Sbjct: 61 GGEKGAFLHYRDLGGNINSLNTFLKKVFSEKRIPPIGKFLCSSAEVAKDISITDILKQGD 120 Query: 102 DLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY 161 +++VQ+VK+P+ TKG RLT+++++ R L+ +P V +S +I+S+ ER RLK++V Sbjct: 121 NVLVQIVKEPIATKGPRLTSELSIVGRCLIVIPFGDRVSISLKIQSDKERIRLKQLVCSI 180 Query: 162 CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 221 + I+RT+A+G +EL + L + W + + ++ +Y E +LR Sbjct: 181 KPKNFSVIVRTSAKGKQASELDKELKILVKRWNDNIVKLINSKSPSLIYEETGRVLALLR 240 Query: 222 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 281 D D+ + I ++ + + ++ S P+ ++ ++ Y G PIFD F + +++ Sbjct: 241 DNFDSSFEHIYINDENMFNEVRDYLSLIDPQKSNIVKLYKGEFPIFDNFVITKQLKSKFG 300 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTGAF---VGHRNLDDTIFNTNIEATQAIARQLRLR 338 + + LK+G YL+I+ TEAM +D+N+G + N +D I + N+ A + IA+QLRLR Sbjct: 301 KIITLKNGAYLVIEHTEAMYVIDVNSGNRLALTANTNQEDVIVDVNMSAAEEIAKQLRLR 360 Query: 339 NLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIE 398 ++GGII+IDFIDM + +R+++ S+ ++KDR K V S +GL+E+TRKR R +++ Sbjct: 361 DMGGIIVIDFIDMYEQVNRQKLYDSMCNFMAKDRAKHHVFPLSKVGLMEITRKRIRPALD 420 Query: 399 HVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESH 458 C G+GT+K + +I V F ++ P VA +K Sbjct: 421 FNAMETCSVPLGKGTIKPSIFFTDMLDEKIKIVVKKMGVKEFSLHIHPYVAAFVKKGFFS 480 Query: 459 SLAEVEIFVGKQVKVQIEPLYNQEQFD 485 + +I +++ + + Sbjct: 481 LNMKWKIKYSVGIRIIPDQSLEILGYK 507 >UniRef50_Q7U4C5 Ribonuclease E n=16 Tax=cellular organisms RepID=Q7U4C5_SYNPX Length = 663 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 144/417 (34%), Positives = 227/417 (54%), Gaps = 17/417 (4%) Query: 1 MTAELLVNVTPSETRVA-YIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++++ + R+A + + E+ + R +G++Y G V VLPG+ AAFV+ Sbjct: 14 MPQQIVIA---EQLRIAAVLTDERVDELIV--AQGRYQIGDVYLGTVENVLPGIDAAFVN 68 Query: 60 IG-LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 IG +K F+H +D+ P + + I+EL+ Q ++VQV+K+P GTKG R Sbjct: 69 IGESEKNGFIHVTDLGPL--------RLKKGSAGITELLEPRQKVLVQVMKEPTGTKGPR 120 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 LT ++ LP RYLV P V +S+RI SE+ER RL+ + G +IRT A+G+ Sbjct: 121 LTGNLALPGRYLVLQPHGQGVNISRRISSEAERNRLRALGVLIKPPGAGLLIRTEADGIA 180 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 E +L D L R W + + + L + R+LRD +L R+ VD Sbjct: 181 EDQLIDDLESLLRQWEAIQQAAETAAPPVLLNRDEDFINRILRDHTSTDLVRVVVDEPAA 240 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + F ++ +E ++ + + F V I+ AL+ +V+L SGGY+II+ TE Sbjct: 241 VARVSSFLGAEADKVL--VEAHSEPSELLEHFKVNAAIRDALKPRVDLPSGGYVIIEPTE 298 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +D+N+G+F N +T+ TN EA IARQL+LRN+GG+IIIDFIDM++ + Sbjct: 299 ALTVIDVNSGSFTRSANARETVLWTNCEAAIEIARQLKLRNIGGVIIIDFIDMDSRRDQL 358 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 ++L A+ D + + + LGLVE+TRKR ++I + CP+C G G V Sbjct: 359 QLLEHFTTAVRDDAARPQIAQLTELGLVELTRKRQGQNIYELFGRACPSCGGLGHVA 415 >UniRef50_C9LKU5 Cytoplasmic axial filament protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKU5_9FIRM Length = 472 Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats. Identities = 161/486 (33%), Positives = 260/486 (53%), Gaps = 20/486 (4%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++++ + ET +A L ++ IE++ IVG IYKG V ++P + FVDIG+ Sbjct: 2 NRVILSDSTDETILAVTRQHKLVDLEIEQQINTEIVGCIYKGIVKNIVPAVDGIFVDIGI 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K AFL D++ +G ++ QV+K KGA +T Sbjct: 62 GKNAFLRRKDLLNEKRFP-----------------TEGSPILAQVIKSDTDMKGALITEK 104 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I++ +Y V + G ++GVS++I SES R+RLK++ E C E G IIRTAAE E Sbjct: 105 ISMLGKYAVTLSGTGYIGVSKKIRSESVRKRLKEIGKEICAEHMGLIIRTAAENADMDEF 164 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D LK W + +R + ++ LY E + + LRD+ + + + D+R YE + Sbjct: 165 RKDITRLKENWDIIQKRFRMEKSPTLLYRESDIIVKALRDYVNKGTEILITDNRKIYERI 224 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + K+ Y R P+ ++E +I +R+VEL SGG LII+ TEA+T Sbjct: 225 CKLNESEHTIEPDKISLYKERMPLLKKEEIEEQIHLLFKRRVELPSGGSLIIEDTEALTV 284 Query: 303 VDINTGAFVGHRN-LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+N+GAF ++ ++ N EA IARQ+RLR +GG+I+IDFIDM E+ ++ ++ Sbjct: 285 IDVNSGAFNRQGIPHEEAVYLINQEAAIEIARQVRLRGIGGMILIDFIDMQKENQKKDIV 344 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 L++ L KD+VK+ V G ++LGLVEMTRKRT S+ C+ CP C+G G + +V++V Sbjct: 345 GILQRELKKDKVKSIVCGMTSLGLVEMTRKRTTHSLIKNYCDICPICNGTGHILSVQSVI 404 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQ 481 +I RE+ V + ++ P VA LK E+ + +++ ++ N+ Sbjct: 405 QQIHRELETVKRYGGARDLVIRCHPEVAARLKEEQKAG--YFMKYFNREIMIEENDHLNR 462 Query: 482 EQFDVV 487 E + V+ Sbjct: 463 EVYSVL 468 >UniRef50_A8GXM7 Ribonuclease E n=15 Tax=cellular organisms RepID=A8GXM7_RICB8 Length = 693 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 121/423 (28%), Positives = 222/423 (52%), Gaps = 4/423 (0%) Query: 68 LHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPS 127 L A+D + + E Q+ + +++R+ Q L+VQV K+ G K A TT ++L Sbjct: 144 LEAADDIEIIQSDKEENIPQYKQYKVQDVIRKNQILLVQVTKEERGNKCAAFTTYVSLAG 203 Query: 128 RYLVFMPGAS-HVGVSQRIESESERERLKKVVAEYCDEQ---GGFIIRTAAEGVGEAELA 183 +Y V MP + G+S++I + ER+RLK ++ + + IIRTA G +L Sbjct: 204 KYCVLMPNKAAQNGISRKISNGDERKRLKNILNKVVNGDKSPYSVIIRTAGRGCSTLDLK 263 Query: 184 SDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL 243 D +YL R+W K+ + + ++ E ++ ++ +RD D + + + + YE Sbjct: 264 KDYSYLSRLWNKIRKSTVKFPAPCFIHEEDSIIRKTIRDMCDHNVKEVIIYGQEAYEDAA 323 Query: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 +F + +P +KL+ + + PIF F VE ++ + + V L SGGY++I+ TEA+ ++ Sbjct: 324 KFMQDLLPSEMTKLKEHKSKTPIFTKFQVEEQLIKLYQPVVTLPSGGYIVINPTEALISI 383 Query: 304 DINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 D+N+G +N+++T TN+EA + IARQ++LR+L G+I++DFIDM+ +R+ + S Sbjct: 384 DVNSGRSTSEKNIEETALKTNLEAAKEIARQVKLRDLSGLIVVDFIDMDETKNRKIIERS 443 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYE 423 ++ LS+DR + S GL+E +R+R R S + C C+G+G V+ E+ Sbjct: 444 FKEFLSRDRARIQTGNISQFGLLEFSRQRLRFSFLETNSSICSHCNGKGVVRADESNAML 503 Query: 424 IMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 I+R I D V+A+ + L + + +E ++ +P + Sbjct: 504 ILRTIENEIFEDRIDIINVFANVSSVIYLLNNKRQEIKFIEEKYNIRLNFYSDPNATSDS 563 Query: 484 FDV 486 + + Sbjct: 564 YSI 566 Score = 88.7 bits (219), Expect = 4e-16, Method: Composition-based stats. Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 3/102 (2%) Query: 1 MTAELLVNVTPS-ETRVAYI-DGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFV 58 M +++++ S ETRV + +++I + ++ GNIY +V+R+ P +QA F+ Sbjct: 1 MNKKIIIDANFSNETRVVLLGQSNNIEDIEFQTTRKQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQG 100 + G+DK+ FL S+I P+ + E K F + E+V Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPASE-KNFPINAFPEIVPPN 101 >UniRef50_C9M9G5 Ribonuclease G n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9G5_9BACT Length = 495 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 155/487 (31%), Positives = 256/487 (52%), Gaps = 26/487 (5%) Query: 4 ELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++ N+ E RVA ++ G L+++++E G+IY RV ++ GM AAF+++G Sbjct: 6 KIYANMLDEEERRVAVVEDGRLRDLYVEHGRPVQQSGDIYLARVESIVSGMNAAFLNLGD 65 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + FL+ +D + V + +L+VQV K P +KGAR+T Sbjct: 66 GRNGFLYLADAKGFS-------------------VHENGELIVQVTKTPRRSKGARVTPQ 106 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 ++LP R+ V++P A VGVS++I S +R+RL+ +V E+GG IIRTAA+ + +L Sbjct: 107 VSLPGRFFVYLPFAGSVGVSRKIGSAKDRQRLRALVGSV--ERGGVIIRTAAQDAADEDL 164 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 A+D A L+ W ++ + K + L+ E R LRD + + DSR ++A+ Sbjct: 165 AADLAQLQEQWERIEQSAKLRMSPGVLWQEDGFLIRALRDELAHHISEVVTDSREAFDAV 224 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 F S + ++ +F+ + EI+ + KV L SGGYL+IDQTEA+T Sbjct: 225 KGFVSAAGAGWSGQVSLLEKGIDLFEYCGLTQEIESLIRPKVLLPSGGYLVIDQTEALTA 284 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+G V +L T+ TN+EA + IARQ+RLR +GGI+I+DFIDM +E R VL Sbjct: 285 IDVNSGKCVDGSSLSATVKTTNLEAAREIARQIRLRAIGGIVIVDFIDMESEADRTAVLD 344 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +L+ A + D K V G ++LGL E+TRKRTR + + C +C G E + Sbjct: 345 ALKDASAADPNKVRVYGMTSLGLAEVTRKRTRLDLRSQMTQPCSSCC-EGRTWKDEALAA 403 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 + R + + S LV + +A+ + L E G+++ ++ P ++ Sbjct: 404 SVKRRLRKAFAGSSSGWALVAMNDELAQIVAQ---KWLKGWEETFGRRIVLRGLPGASRT 460 Query: 483 QFDVVMM 489 + + + Sbjct: 461 DWRIEAL 467 >UniRef50_A5FJP9 Ribonuclease, Rne/Rng family n=29 Tax=Bacteroidetes RepID=A5FJP9_FLAJ1 Length = 543 Score = 456 bits (1174), Expect = e-127, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 251/474 (52%), Gaps = 24/474 (5%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 EL++ + A + G L E+H E E VG+I+ ++ + + G+ AAFV++G Sbjct: 31 NKELIIRSSSEAVDFALLKDGKLIELHKEEEKSNFQVGDIFIAKIRKPVAGLNAAFVNVG 90 Query: 62 LDKAAFLHASDIMPH-------TECVAGEEQKQFTVRD------------ISELVRQGQD 102 +K AFLH D+ P+ + V+ + K F+++ I++++ Q Sbjct: 91 FEKDAFLHYHDLGPNLASQLKFIKLVSAGKLKDFSLKTFQFEKEIDKDGIITDILSANQS 150 Query: 103 LMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC 162 ++VQVVK+P+ TKG R++ +++L R++V +P + V +SQ+IE + E++RLKK+V Sbjct: 151 VLVQVVKEPISTKGPRISAELSLAGRFIVLVPFSDRVSISQKIEDKKEKDRLKKLVLSIK 210 Query: 163 DEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRD 222 + G I+RT AEG AEL D L W+ + ++ ++ GEL A +LRD Sbjct: 211 PKGFGVIVRTVAEGKNVAELEKDLQNLLGRWSAMCKKLPTAHHPSKVLGELNRASSILRD 270 Query: 223 FADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYT-GRQPIFDLFDVENEIQRALE 281 + I++D Y E+ E P S ++ Y PIF+ +++E +I+ + Sbjct: 271 VFNDTFSGIQIDDEELYHQTKEYLQEIAPSKQSIVKFYQSNDTPIFEKYNIERQIKTSFG 330 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTG-AFVGHRNLDDTIFNTNIEATQAIARQLRLRNL 340 R V + G YLII+ TEA+ +D+N+G N +DT N+ A IARQLRLR++ Sbjct: 331 RTVSMSKGAYLIIEHTEALHVIDVNSGNRSNKATNQEDTAMEVNMIAAAEIARQLRLRDM 390 Query: 341 GGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 GGII++DFIDM+N ++R+ + L + +S D+ K + S GLV++TR+R R + Sbjct: 391 GGIIVVDFIDMSNPENRKVLFDFLREEMSDDKAKHKILPPSKFGLVQITRQRVRPEVNIK 450 Query: 401 LCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKG 454 E P G ++ + +I ++ R+ + ++ ++ P VA L Sbjct: 451 TREEDPN-KVNGEIEAPILIIDKITSDLERLLKTH--NKVVLNTHPFVAAYLSK 501 >UniRef50_A8F3K6 Ribonuclease, Rne/Rng family n=1 Tax=Thermotoga lettingae TMO RepID=A8F3K6_THELT Length = 470 Score = 450 bits (1157), Expect = e-125, Method: Composition-based stats. Identities = 161/488 (32%), Positives = 258/488 (52%), Gaps = 23/488 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +L++N+ + VA + G+LQEI E + GNIY GR+ +++PG+ AAFV+I Sbjct: 1 MANQLVINIQEEKVNVAILSDGVLQEIFSE--EDESLSGNIYVGRIEKIIPGLNAAFVNI 58 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G ++ FL +DI KQ+ V++G ++VQV D +GTKG +LT Sbjct: 59 GGNRNGFLKLTDI-----------TKQYISEVTKSPVKEGIKILVQVKHDAIGTKGPQLT 107 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I+L R+LV+ P + GVS++++ ER RL+++ + G +IRTAAE V E Sbjct: 108 GKISLAGRFLVYFPLSKVRGVSKKVQEPKERVRLQELSRSLA-KNDGVVIRTAAEFVPEE 166 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 +A + LK W KV++ KR + L E +LR+ + ++D + V++R YE Sbjct: 167 YVAEEFNQLKSEWRKVLQSFKRARKIKLLRREPTTVDYILRERLNKDIDEVHVNTREIYE 226 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + E + K Y +FD + ++I + ER + L SGGY+ +D TEAM Sbjct: 227 KVKE----VSKRLAKKPMIYFFEGDLFDKLCIYSQIGQLQERIIHLPSGGYIALDTTEAM 282 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T D+N+ +FV +N D + TN+EA IARQLRLRN+GGI+I+DFIDM ++ + R+ Sbjct: 283 TVFDVNSASFVSEKNHADLAYKTNVEAAYEIARQLRLRNIGGIVIVDFIDMPSKTYYDRL 342 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L+QA+ D + GF+ LGL+EMTRKR SI+ +L + CP C G G V + V Sbjct: 343 TKELQQAIRNDSAHIELIGFTKLGLLEMTRKRRSPSIDQLLFSGCPICKGTGRVVSPHIV 402 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 ++ E+ ++ + + V ++ + + + + + + N Sbjct: 403 VRRVINELSKIENISEYSSVKVILHQRLSGYTEKIKKSLSSTIVEKIRFSFE-----GSN 457 Query: 481 QEQFDVVM 488 F VV Sbjct: 458 PGDFSVVF 465 >UniRef50_Q2GES6 Ribonuclease, Rne/Rng family n=2 Tax=Neorickettsia RepID=Q2GES6_NEOSM Length = 549 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 131/485 (27%), Positives = 230/485 (47%), Gaps = 14/485 (2%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++L++ ETR+A + G+L E GNIY+G V +V +QAAFV+ Sbjct: 2 KKILIDSRDGETRLAILRSGLLVGYDCEHTNSLPQKGNIYQGIVFKVDDSLQAAFVEYLP 61 Query: 63 DKAAFLHASDIM----------PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPL 112 + FL S+I G+ + + +E++++G L VQV K+ Sbjct: 62 GEYGFLPFSEIPVIYFDLLEEVKANAIAEGKHVNLYKHFNATEVIKKGLVLFVQVTKEKR 121 Query: 113 GTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE-YCDEQGGFIIR 171 TK LT + LP RY V MP + +S++I E RL E + + G + + Sbjct: 122 RTKDVTLTAYVKLPGRYCVLMPFLKDLILSKQIVDEQAVSRLTHFAEEEMANRKCGVVFK 181 Query: 172 TAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRI 231 + + D L W KV+ + + + ++ E L ++ LRD D + + Sbjct: 182 PYCADADKKNILGDYCSLLSEWEKVVSQNDKSKAPRLVFREANLVKKFLRDSYDGSVGEV 241 Query: 232 RVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGY 291 V+ Y+ ++ + + Y+ P+FD + VE ++ E + L++G Y Sbjct: 242 IVNHSDVYQEAKDYIQNSLHFENPNITLYSDTLPVFDKYKVEPQVDGLYEETIYLRNGAY 301 Query: 292 LIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDM 351 ++I+ TEA+T VD+N+G N+++T + N+EA I R L LR + GI++IDFIDM Sbjct: 302 IVINTTEALTAVDVNSGRMKKESNIEETAYKVNMEAVAEIVRHLELRGIAGIVVIDFIDM 361 Query: 352 NNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGR 411 NN + V +L A + R + + + GL+ ++++RT+ +I +CP C G+ Sbjct: 362 NNSKYMLNVERALLDAFKRYRSRVQIAPINKFGLIALSKQRTKHNILDSHTVKCPCCEGK 421 Query: 412 GTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQV 471 G V +E +++ R ++ A V A+P +A A+ LA+ E VG + Sbjct: 422 GKVLKME---HQVRRVFSAIYTAPRCREVTVTANPELAVAVFNGYRKMLAQAEKVVGGSI 478 Query: 472 KVQIE 476 +I+ Sbjct: 479 VFKID 483 >UniRef50_Q2B6H0 Cytosolic axial filament protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B6H0_9BACI Length = 492 Score = 447 bits (1151), Expect = e-124, Method: Composition-based stats. Identities = 159/486 (32%), Positives = 263/486 (54%), Gaps = 14/486 (2%) Query: 3 AELLVNVTPSETRVAYI-DGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L++N E R A + + G +++ I++ VG+IY G V++VLPGM AAFV+IG Sbjct: 2 KKLVINYATREKRYAVLNESGKPEKLIIDQPKNLSAVGSIYLGTVAKVLPGMNAAFVEIG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 +K+ FLH + + + E++++ + IS VR+G+ L+VQV KD GTKG RLT Sbjct: 62 EEKSGFLHRDRLASYVR--SAEDKEKKDKKSISSFVREGEKLLVQVEKDAAGTKGPRLTN 119 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I L++MP +V VS++IE +S RE L+ + + +E+ G I RT+A G E + Sbjct: 120 VIEFQGEKLIYMPFGRYVAVSRKIEKDSAREELRTLGMKLKEEEEGLIFRTSAAGASEED 179 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 + L+ ++ ++ + +L + + + A + VD + Sbjct: 180 FQKELEELRAEHRELAKKAASVKKPAKLAEKETFLEEAAAEMARLGAGEVVVDDLAVKQK 239 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 L + +E S + +Y ++ IF ++++ EI RAL++ V L +G YLI D+ EA+T Sbjct: 240 LEKAAAE------SVVRYYNNKESIFSAYNLDQEIDRALKKIVWLDNGAYLIFDEAEALT 293 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+NTG + G NL DT+ TN A ARQ+RLR++GG+I+IDFIDM E R+ + Sbjct: 294 VIDVNTGKYSGRENLRDTVLRTNEWAAAEAARQIRLRDIGGMILIDFIDMKEERDRQHIS 353 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 +E+ L KD +T + GF+ LG++++TRK+TR ++ L +C C G G + + ET Sbjct: 354 RVMEKELRKDERRTRIVGFTPLGILQITRKKTRAALSESLTVKCTACEGTGRMVSAETAA 413 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIE----P 477 + + REI + D + L+ S V + GE+ +E G ++ E P Sbjct: 414 FRLEREIWEM-RGSDYEAALIRLSADVLDVFSGEQGIHRKRLEATCGLRLFFAAEDSRIP 472 Query: 478 LYNQEQ 483 Y Q Sbjct: 473 FYEIRQ 478 >UniRef50_A8UTH4 Cytoplasmic axial filament protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UTH4_9AQUI Length = 466 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 147/454 (32%), Positives = 256/454 (56%), Gaps = 18/454 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M L+++ + + + + EI +E+ ++ + G+I+KGRV R + AFVDI Sbjct: 1 MDVRLIISASRNLVLTFLLKEKEISEIKVEKRGKKRLSGSIFKGRVKRFAKSLDGAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G+ K A+L E A EE + + + +G +++VQ+ ++P+ KGA++T Sbjct: 61 GIGKEAYLPLK----AYENTALEEDESCPLPE------EGSEILVQMKREPIEDKGAKVT 110 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I++P ++LV++P + V VS +IE E+ R K++ DE+ G I+RT+AE E Sbjct: 111 CRISIPGKFLVYLPTSKKVFVSSKIEDENRRAFFKELFERALDEE-GVIVRTSAEFATEE 169 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 EL ++ L+ W ++ ER + + +Y E+ +++RD+ + ++ I VD R + Sbjct: 170 ELLAELQKLRNTWKEIKERSASIK-QGLVYEEVPAYVQLVRDYWN-DVSEIIVDDRELWS 227 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 LL Y PE+ K+ + F + ++ + R R V L++GGY+II++TEAM Sbjct: 228 ELLAELESYFPELVGKVRYVKNISVFFKKYGLDKALTRLFARYVWLRNGGYIIIEETEAM 287 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+N+G+ G L+D TN+EA + I RQ++LR++GGI+IIDFIDM N+ +R ++ Sbjct: 288 TVIDVNSGSGCGDT-LEDNALQTNLEAAEEIVRQIKLRDIGGIVIIDFIDMKNKKNREKL 346 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 + +++ + + K V G + LGL+E+TRK+ S+ +L CP C G+G +K+ E V Sbjct: 347 VKRVKELFADEGSKVHVYGITHLGLLELTRKKETPSVTRLLSINCPYCKGKGYIKSPEVV 406 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKG 454 YEI +EI Y V +PA+ E ++ Sbjct: 407 LYEIEKEINYFKGRY----LEVRVNPALKERVEN 436 >UniRef50_A9VIS0 Ribonuclease, Rne/Rng family n=78 Tax=Bacillus RepID=A9VIS0_BACWK Length = 469 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 156/470 (33%), Positives = 257/470 (54%), Gaps = 28/470 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 L +N T SE RVA + + E+ +R + IVG+IY GR+ R + GM AAFV+IGL Sbjct: 9 KTLYINYTGSEKRVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGL 68 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K A+L D+ + +GQ ++VQVVK+ + TKG +LT Sbjct: 69 EKHAYLSFDDVPSSYR------------------IHEGQAILVQVVKEAIDTKGPKLTAK 110 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I +Y+V+MP VS++I++ R++L + + GG+I R+A+E E+ Sbjct: 111 IEFTGKYVVYMPYDEMRAVSRKIKNNKRRQQLLGI---EVEGTGGYIFRSASEKGTIDEI 167 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 ++ L++++ ++ ++ + + L+ RV ++ +++I VD+R + L Sbjct: 168 QAEMQGLQQLYEELKRKEDQGKAPLLLHQPATFLDRVFQENPIETIEKIVVDTRSIVKEL 227 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 E + ++ Y + +F+ F ++ EI++AL++ V L +G YLI++Q E MT Sbjct: 228 EEKVGK------ERVAFYNEKSSMFNHFGIDREIEKALQKIVWLPNGAYLIVEQMETMTV 281 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+NTG F G +NL DT+F TN A + IARQLRLR++GG+I+IDFI+M + + +V Sbjct: 282 IDVNTGKFTGKQNLQDTVFRTNEMAAEEIARQLRLRDIGGMILIDFINMKRREDKEKVRE 341 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L AL DR T V GF+ LG++EMTRKR + S+ VL EC C G V + ET+ Y Sbjct: 342 RLMIALQDDRTYTRVLGFTELGILEMTRKRKKHSLRDVLLEECAPCKATGYVISNETIAY 401 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVK 472 E+ RE++ + + + L+ AS V + +E EI+ + Sbjct: 402 ELERELI-TYGNIEDEAVLIAASKKVQKHFSQKELQKNIPFEIYFKDDII 450 >UniRef50_A5CEM7 Ribonuclease E n=2 Tax=Orientia tsutsugamushi RepID=A5CEM7_ORITB Length = 675 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 111/423 (26%), Positives = 215/423 (50%), Gaps = 7/423 (1%) Query: 71 SDIMPHTECVAGEEQKQFTVRD---ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPS 127 +I P ++ + E + I +++ GQ ++VQ K+ G K A TT I+L Sbjct: 142 DEIEPVSKQNSQEIAEFLPPHKQQEIQDVISSGQIVLVQATKESRGNKNASFTTYISLSG 201 Query: 128 RYLVFMPG-ASHVGVSQRIESESERERLKKVVAEYC---DEQGGFIIRTAAEGVGEAELA 183 +Y + P ++H G+S+RI + +R++LK +V + IIRTA E+ Sbjct: 202 KYCILTPNLSNHSGISRRITNSEDRKQLKTIVGNLISKITKTSSVIIRTAGSRRTAYEIK 261 Query: 184 SDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL 243 D YL ++W +++ K+ + +Y E + ++ + D + + + + + Y+ + Sbjct: 262 KDFNYLLKLWNEIINTAKQAKPPAFIYVENDIIRKTILDIYNISVQEMIIQGKAAYDYAV 321 Query: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 +F + +P K++ + PIF +++E ++ + V L SGGY++I+ TEA+ + Sbjct: 322 KFMNAILPSEVHKIKEHKSTIPIFAQYNLEEQLATLYKPIVTLPSGGYIVINPTEALIAI 381 Query: 304 DINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 D+N+G +N+++T TN+EA + I+ Q++LRNL G+I IDFI M + + + + S Sbjct: 382 DVNSGKDTSEQNIEETAVKTNLEAAKEISHQIKLRNLSGLITIDFICMTDSKNHKLIEKS 441 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYE 423 ++ L+KD+ K V+ ++ G+++++R+R R S C C G+G V+ E+ Sbjct: 442 FKKYLAKDKAKIQVDSINSFGVLQLSRQRLRPSFLESNSVICSHCSGKGIVRAEESNAMI 501 Query: 424 IMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 I+R I H S+ VYA + + +A++E Q+K + + Sbjct: 502 ILRTIENEIHTSKSNIINVYAHLHSVTYILNNKRTEIADIEKKYNVQLKFYNDFQSTSDS 561 Query: 484 FDV 486 F + Sbjct: 562 FSI 564 Score = 96.4 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 14/115 (12%) Query: 1 MTAELLVNVT-PSETRVAYIDGG-ILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFV 58 MT +LV+ + P+ETRVA ID + EI E ++ I GNIY ++++ P +QAAF+ Sbjct: 1 MTKRILVDASYPNETRVALIDNNCRIAEIEYETASKHLIKGNIYLATITKIEPSLQAAFI 60 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLG 113 D K+ FL S+I P TV +V++ + + Sbjct: 61 DYSNGKSGFLPFSEIHPDYYNNVTNSLPFDTVP------------LVEITSEEIK 103 >UniRef50_A2BYM7 S1 RNA binding domain:Ribonuclease E and G n=8 Tax=Prochlorococcus marinus RepID=A2BYM7_PROM5 Length = 608 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 132/419 (31%), Positives = 232/419 (55%), Gaps = 15/419 (3%) Query: 1 MTAELLVNVTPSETRVA-YIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++++ + R+A + + E+ + + +G+I+ G V VLPG+ AAF+ Sbjct: 1 MSQQIIIA---EQARIAALLTDDRVDELIV--AQGQYQIGDIFLGTVENVLPGIDAAFIH 55 Query: 60 IG-LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 IG +K F+H SD+ P + + V I+EL+ Q ++VQV+K+P G KG R Sbjct: 56 IGESEKNGFIHVSDLGPL--------RLKKGVVGITELLEPKQKVLVQVMKEPTGNKGPR 107 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 LT +I+LP +YL+ P V +S++I +++ER RL+ + G + RT AE + Sbjct: 108 LTGNISLPGKYLILQPFGQGVNISRKINTDTERSRLRALGVLIKPPSTGLLFRTEAEKIK 167 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 E L D L + W +V++ + Q + + + ++LRD A ++ +D+++ Sbjct: 168 EELLIEDLENLIQQWDQVLKISETCQPPNLINRDEDFSLKILRDCIKASTSKVVIDNKVA 227 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 E +F + L + + I + + + IQ+ALE +V+L SGGY+II+ TE Sbjct: 228 LEKAKDFLINNDSNVDLVLHNNDINEHILEKYQINKTIQKALEPRVDLPSGGYIIIEPTE 287 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +D+N+G+F N T+ TN EA I+RQ++LRN+GG+++IDFIDM + + Sbjct: 288 ALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQMKLRNIGGVLVIDFIDMESRRDQF 347 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 ++L A+ D + + + LGLVE+TRKR ++I + +C C+G G +K++ Sbjct: 348 QLLEQFTLAIKDDSARPQIAELTELGLVELTRKRQGQNIYELFGKKCNACNGLGHIKSL 406 >UniRef50_B3QZC2 Ribonuclease, Rne/Rng family n=12 Tax=Chlorobiaceae RepID=B3QZC2_CHLT3 Length = 582 Score = 436 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 215/378 (56%), Gaps = 3/378 (0%) Query: 81 AGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASH-V 139 ++ + I+ ++ ++VQV+K+P+ KGARLT+DIT+ R++V +P S + Sbjct: 158 EKRNRRMSYTQMIASKLKPNDSILVQVIKEPISNKGARLTSDITIAGRFMVLLPFGSGHL 217 Query: 140 GVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMER 199 +S+RI + ER RLK +V + G I+RT AE E L +D L W ++ E Sbjct: 218 AISKRIVNRRERRRLKGIVRSILPKGFGAIVRTVAEEQDELLLKTDLEKLLAKWKQIEET 277 Query: 200 KKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEH 259 K + ++ E + VLRD ++ + +S+ Y+ L F PEM ++ H Sbjct: 278 VKDAKPPKLIFKEDTMISSVLRDSLTEDVTELVTNSQHIYKETLTFVRWAAPEMEKRVSH 337 Query: 260 YTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDT 319 Y G+ P+F+ + + +++ RKV LKSGGYLII+ TEAM +D+N+G + R ++ Sbjct: 338 YKGKLPLFESYGIAKDVESIFSRKVWLKSGGYLIIEHTEAMVVIDVNSGRYAAKREQEEN 397 Query: 320 IFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNG 379 TN+EA + I+RQLRLR++GGII++DFID+ +E + R+V +++ +DR K+++ Sbjct: 398 SLKTNLEAAKEISRQLRLRDIGGIIVVDFIDLLDEKNARKVYDTMKTEFRRDRAKSNILP 457 Query: 380 FSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVH--HAYDS 437 S GL+++TR+R R S+ + +ECP C G G V+ T ++I R + + + Sbjct: 458 MSEFGLMQITRERIRPSLMQRMGDECPACGGSGVVQARHTTIHQINRWLRKYALNGNHAF 517 Query: 438 DRFLVYASPAVAEALKGE 455 +R +Y S VA+ L + Sbjct: 518 ERLDLYVSQTVAQPLFQD 535 Score = 99.5 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 47/77 (61%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +LL+N + E +VA ++ G L E+ IER VG+IY GRV +V+ G+QAAF+DIG Sbjct: 5 KKQLLMNKSGDEVQVALVEDGRLAEVFIERPESTRNVGDIYLGRVQKVVEGLQAAFIDIG 64 Query: 62 LDKAAFLHASDIMPHTE 78 FLH SD+ E Sbjct: 65 HSSDGFLHFSDVGTTNE 81 >UniRef50_B2V9I2 Ribonuclease, Rne/Rng family n=4 Tax=Hydrogenothermaceae RepID=B2V9I2_SULSY Length = 470 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 146/492 (29%), Positives = 257/492 (52%), Gaps = 32/492 (6%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +L+V T ++ I E+ IE G+IYKG+V R M+A FVDI Sbjct: 1 MDRKLIVTKGFKNTFYLILEDNIPVELKIEDIEISKQTGSIYKGKVLRYSQAMEAFFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK AFL DI ++ + + +G ++VQV + P+ TKGA+L+ Sbjct: 61 GEDKEAFLPKKDIC----------------EEVCKNIDKGSSILVQVKRSPVSTKGAKLS 104 Query: 121 TDITLPSRYLVFMPGASH-VGVSQRIESESER----ERLKKVVAEYCDEQGGFIIRTAAE 175 I+LP +YLV +P + + +S + E ER ER+K ++ E E G IIRTAA+ Sbjct: 105 CKISLPGKYLVLLPQSKGKISISSKYEDNDERNEIKERIKNLLHEINQENFGLIIRTAAK 164 Query: 176 GVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDS 235 + + D +L +W ++ + + + +Y E A +LRD+A + I D Sbjct: 165 DAPDEAILEDFKFLIELWNQIQKDYNKKKAPSVIYEEPFKAFAILRDYAGS-FSEIISDD 223 Query: 236 RLTYEALLEFTSEYIPEMTSKLEHYTGR-QPIFDLFDVENEIQRALERKVELKSGGYLII 294 + + +F E K+ Y R + +F ++++ I + L LKSG YL+I Sbjct: 224 VSILKLIKKFVLENFTNANIKMTPYRKRKESLFYEYELDKLINKILSPYAYLKSGSYLVI 283 Query: 295 DQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 +TEA+ +D+N+G+ +NL++T F N+EA I RQ+RLR+L GI++IDFIDM N+ Sbjct: 284 QETEALVVIDVNSGSCHKQKNLEETAFRINLEAIPEIVRQIRLRDLSGIVVIDFIDMINQ 343 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 +H+ ++ L++ KD+ + G + LGL+E++RK+ ES+ L + C C+GRG + Sbjct: 344 EHKEAIVERLKEEFKKDKRPVKIKGLTQLGLLELSRKKLEESLIKQLSDYCQHCYGRGYI 403 Query: 415 KTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ 474 K+ + V +E+ + I ++ + + +P +++A+ + + + + V+++ Sbjct: 404 KSQDVVIFELEKTINKLK---PFAKMKIIINPKLSKAVDNLLEN------LKLKELVEIE 454 Query: 475 IEPLYNQEQFDV 486 ++F+V Sbjct: 455 YNNKMQLDKFEV 466 >UniRef50_B1LBB5 Ribonuclease, Rne/Rng family n=6 Tax=Thermotogaceae RepID=B1LBB5_THESQ Length = 459 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 141/473 (29%), Positives = 252/473 (53%), Gaps = 27/473 (5%) Query: 16 VAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMP 75 A +D G L+E+ + I G IY GR+ +++PG++AAFV IG + AFL S+I Sbjct: 3 YAVMDDGELEEVFFDEI--ETIAGKIYLGRIEKIVPGLEAAFVKIGKGRNAFLKLSEINE 60 Query: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 + Q+ V++GQ ++VQV KD G KG ++T I + R++V P Sbjct: 61 AYRKTVLKGQE----------VKEGQKILVQVKKDASGKKGPQVTPQIGIADRFVVIFPF 110 Query: 136 ASHVGVSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGVGEAELASDAAYLKRVWT 194 +GVS++IE SER RL+ + + G G I+RTAAEGV E E+ + W Sbjct: 111 KKVIGVSRKIEDASERRRLRTIAFSLRKKYGVGVIMRTAAEGVDEEEIIKNFERALEKWN 170 Query: 195 KVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMT 254 +V+++ +R + LY E ++++++ ++++D++ + R E L ++ + Sbjct: 171 QVLQKFRRSRKPKLLYEE-DPVEQIIKEKVNSKIDKLIYNDRSLLETLQKYLQ----NLP 225 Query: 255 SKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR 314 K E +F+ F V +++ L R V LKSGG ++ID+TEA+T +D+N+ ++ Sbjct: 226 KKPEIEYVEGDLFEKFSVYERLKKLLSRTVPLKSGGNIVIDRTEALTVIDVNSESYTDAE 285 Query: 315 NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVK 374 N ++ TN+EA + I RQL LRN+GGI++IDFI + ++L ++ +D + Sbjct: 286 NQEELALKTNMEAIEEIVRQLILRNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGTR 345 Query: 375 TSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHA 434 + GF+ LGL+E+TRKRT ++ +L CP C G G V + + + I ++ ++ Sbjct: 346 IEIFGFTNLGLLEITRKRTTRPLDTLLFTRCPVCSGTGKVLSQKILLKRIREDLKKLK-- 403 Query: 435 YDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN-QEQFDV 486 D + + P ++ K E+ L + +VK+ ++ ++ +++ Sbjct: 404 -DFEEVTLKVHPNMSGYFKREDIKKLQK-----EFKVKLNLDYGWHDPNSYEI 450 >UniRef50_A6LNV2 Ribonuclease, Rne/Rng family n=2 Tax=Thermosipho RepID=A6LNV2_THEM4 Length = 465 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 151/464 (32%), Positives = 248/464 (53%), Gaps = 20/464 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M L++N + A I+ L E+ + + GNIY GR+ RV+ + A FV+I Sbjct: 1 MEKILVLNSLDNGLHYAIIENNRLVELA--SDEEEKLTGNIYLGRIERVVNALDALFVNI 58 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G K FL D+ +K F + + + G ++VQV KDP+G KG +LT Sbjct: 59 GTKKNGFLRFKDV----------PEKYFEFFSLKK-LENGGKILVQVKKDPVGDKGPQLT 107 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE-QGGFIIRTAAEGVGE 179 ++I++ RY+V P + VGVS++IE E ER+RL + + ++ G I+RTA+EG+ E Sbjct: 108 SNISVAGRYVVLFPFSEVVGVSKKIEDEDERKRLYDLAGRFSEKYNLGVIMRTASEGLDE 167 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + S+ L + K++E KR + LY E L +LR+ ++ I ++ Sbjct: 168 VHIMSEIDILSKKINKIIESFKRKRKAQVLYKEENLLDYILREKLTKDVKLIITNNFKHV 227 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E + ++ + K+E G FD D+ + L+RKV L SGG +IID+ EA Sbjct: 228 ELIRKYLKIFSKR--PKIEIIDGDS--FDYMDIYKYFRELLKRKVLLPSGGEIIIDKAEA 283 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T +D+N+ FV +N +T F TN EA I RQLRLRN+GGII+IDFIDM++++ ++ Sbjct: 284 LTVIDVNSKHFVKGKNQQETAFQTNKEAVSEIFRQLRLRNIGGIILIDFIDMDSDEKKKL 343 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 +L +++ + KD+ K + GF+ LGL+EM+RKRT S CP C+G G + + + Sbjct: 344 ILKQIDEEIKKDKSKIEIFGFTRLGLLEMSRKRTVRSFFENYITICPICNGTGFIVSPKM 403 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEV 463 ++ ++I D+ ++ P + L+ E ++ Sbjct: 404 TLKKLYQKIEEAPE--DAKEVIIKLHPYFKDKLEKSELKKRKDI 445 >UniRef50_Q2GKZ9 Ribonuclease, Rne/Rng family n=10 Tax=Anaplasmataceae RepID=Q2GKZ9_ANAPZ Length = 636 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 119/401 (29%), Positives = 204/401 (50%), Gaps = 4/401 (0%) Query: 89 TVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG--ASHVGVSQRIE 146 + + +++ Q LMVQ+ K+ G+K A +T I L RY +FMP + G+S+RI+ Sbjct: 163 KMYKVQNVIKVDQKLMVQITKEERGSKCATFSTYIVLAGRYCIFMPNSGNKNSGISRRID 222 Query: 147 SESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQT 205 R+ LK+ + E ++ G IIRTA EL D +YL+ W +V + Sbjct: 223 DCVHRKNLKEFLDEMKLPKEAGVIIRTAGSNRTHKELERDLSYLQSTWDEVKSSFESVTH 282 Query: 206 RYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQP 265 LY E + +R LRDF D + + V + + E+ + ++ Y G P Sbjct: 283 PSLLYVEADVIKRTLRDFCDENVHDVVVAGSKAFGLVKEYAKS-MFGNRLRVRTYKGSIP 341 Query: 266 IFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNI 325 IF + V +I K+ L SGGYL+I TEA+ ++D+N+G G ++++T + TN+ Sbjct: 342 IFTHYRVNAQILELYTDKIYLPSGGYLVITPTEALVSIDVNSGRMTGEDSIEETAYRTNM 401 Query: 326 EATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGL 385 EA + IARQ+ LR L G+I+IDFIDM + R V + +A D+ K SA GL Sbjct: 402 EAVKEIARQVNLRGLSGLIVIDFIDMVKYRYCRAVEAEVREAFKGDKAKIQFGYISAFGL 461 Query: 386 VEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYAS 445 +E++R+R ++SI +C C G G +++E++ I+R++ V + +V Sbjct: 462 MEISRQRVKQSILDSSTVQCHHCKGVGRTRSLESISASILRDVSYVANKNPEKILVVSVV 521 Query: 446 PAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 +V L + +AE+E +++ ++ +++ Sbjct: 522 SSVVSHLFNSKRRQIAEIESEFKVLIRLDVDDNLGISDYNI 562 Score = 86.4 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVG-NIYKGRVSRVLPGMQAAFVDI 60 +L++ E RVA +D G + E E + R+ + G NIY V R+ P +QA F++ Sbjct: 11 KRILIDAVYLDEIRVAVLDEGKVVEFDQELKDRKQLRGGNIYFAVVRRIEPSLQAVFIEY 70 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQK 86 G+ K FL S+I + EE+ Sbjct: 71 GVGKHGFLPFSEIAVEHYQIPQEEKD 96 >UniRef50_A5I670 Ribonuclease G n=12 Tax=Clostridium RepID=A5I670_CLOBH Length = 479 Score = 424 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 141/493 (28%), Positives = 252/493 (51%), Gaps = 29/493 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 E+ + R+ + ++E+ IE + + VG IY G V ++P +++AFVDIG Sbjct: 2 KEIFIERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGW 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K A+L+ +T +++G ++V+VVK+ L KG ++T Sbjct: 62 NKNAYLYLDKKFNNTH------------------IKKGDYILVEVVKEDLNKKGPKVTNA 103 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 IT+P RY V + + S +I+ E R ++ + + G +IRT A + Sbjct: 104 ITIPGRYTVLQILNNEITFSHKIKDEKIRTEIQNNI--VKPKDVGILIRTEAINTSIENI 161 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 ++ L ++++ ++E+ K L+ + ++LRD + + +I ++ R Y + Sbjct: 162 NNEIRRLYKIYSSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYV 221 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 EF EY E KL+ Y G + + D + +E EI +KV L GGY+IID+TEAM Sbjct: 222 SEFLKEYG-ENNIKLDIYEGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYV 280 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 VD+N+G V +++ TIF TN+EA I Q+ LRNL GII+IDFIDM+NE+ + +VL Sbjct: 281 VDVNSGKNVKGNSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLD 340 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L+Q L +D+ K+ V F+ L LV++ RKR ++I + C C G+G++ + + Sbjct: 341 KLKQGLKRDKNKSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKL 400 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEI--------FVGKQVKVQ 474 I EI+ + + + + + + + ++E+E ++ + + + Sbjct: 401 LIRNEIINILNMREIKDIYIELNKRYKDYIDKNRIQFISEIEALEKNIYINYIDAENQYK 460 Query: 475 IEPLYNQEQFDVV 487 +EPL + Q + V Sbjct: 461 VEPLIFKNQIEDV 473 >UniRef50_A9BIJ0 RNA binding S1 domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIJ0_PETMO Length = 471 Score = 423 bits (1089), Expect = e-117, Method: Composition-based stats. Identities = 136/487 (27%), Positives = 261/487 (53%), Gaps = 25/487 (5%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +LV+ E R+A ++ L EI E +G I+ G + +P ++A FV+IG Sbjct: 4 EKTMLVSKALEEIRIAILEEDKLSEIFFEDFETDRNIGKIFLGIIENRVPSLEAFFVNIG 63 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 L K FL D++ + G ++VQV KD KG +L+ Sbjct: 64 LGKNGFLRYRDVLDD-----------------PNQYKVGDKILVQVRKDGGTRKGPQLSM 106 Query: 122 DITLPSRYLVFMPG-ASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I+LP +YLV++P +G+S++I E ER RL++V + + I RT +EG+ E Sbjct: 107 QISLPGKYLVYIPNSNESIGISRKILQEKERIRLRQVAKKILIDNESIIFRTNSEGIDEK 166 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 E+ + + +++++ +++R + LY E + +LR+ D++ +I D R + Sbjct: 167 EVEVELSEMRKMYNSILQRFHSQKNPGVLYEESDFLEYILRERLDSKTKKIITDDRQIFR 226 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 L + + E+ K+E G +F + ++ ++++ +K+EL GG + +D+TEA+ Sbjct: 227 KLKKSLKGF--ELKPKVEFVRG--DVFQIHNIYHQMEEIFTKKIELSGGGTITVDRTEAL 282 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+++ + +N+++T F TN+EA + IARQL+LRN+GG+I++DFIDM + H++ + Sbjct: 283 TAIDVDSAGNLEGKNIEETSFITNMEAAKEIARQLKLRNIGGMIVVDFIDMKDSSHKKTI 342 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 ++ L++ KD+ K ++ GF+ +GL+E+ RKRT + ++ + ++CP CHG G + V Sbjct: 343 INILKEESKKDKSKVTILGFTNMGLLEIIRKRTTQPLDTNVYSQCPLCHGTGKIIAPSLV 402 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSL-AEVEIFVGKQVKVQIEPLY 479 +++E++ ++ V A L G + +L E+E + +++V Sbjct: 403 HGRLIKELLSSAKEIKKEKIKVIEINAFHN-LSGYLTPALTEELEKQLNVKLEVSFN-WL 460 Query: 480 NQEQFDV 486 N +++ Sbjct: 461 NPNSYNI 467 >UniRef50_C5EUP6 Ribonuclease G n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EUP6_9FIRM Length = 393 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 130/402 (32%), Positives = 204/402 (50%), Gaps = 15/402 (3%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 L+V A + G + ++ +E E ++ NIY G+V +V+ + AAFVDIG Sbjct: 3 RLIVTQLNDRVCTAAVSGSRITQLMMEPEDSSSLLNNIYIGKVQKVVGNINAAFVDIGGG 62 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + + + ++ V + ++ G +++VQV +D + TK LT + Sbjct: 63 RTGYYSLDE-----------NKEHLFVSPSTGKLKAGDEIVVQVSRDAVKTKAPVLTGKL 111 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG---GFIIRTAAEGVGEA 180 RY V G + VG S +I + R++ ++ E E G G I+RT G + Sbjct: 112 AFTGRYCVLTAGKTGVGFSNKIGDNKYKARVRSMLNEALAEDGDRFGIIVRTNGAGATDE 171 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L + LK ++ K+ + +Y L +RD LD I D YE Sbjct: 172 VLLQEYRQLKDMYLKLSKEASCRTCYSCIYRALPGYIAAIRDSYSGTLDGIVTDIPAYYE 231 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 L ++ +Y E KL Y + P+ L+ +++ ++ AL + V LKSGGYL+I+ TEA Sbjct: 232 ELKDYLEKYQAEDADKLTLYEDKLLPLSKLYSLDSALEHALNKHVWLKSGGYLVIEPTEA 291 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 M +D+NTG + G + + DTI N+EA I RQLRLRNL GII+IDFIDM E+ R Sbjct: 292 MVVIDVNTGKYSGKKKMQDTICRINMEAADEIGRQLRLRNLSGIILIDFIDMEREEDREM 351 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 ++ L +SKD VKT+V + L LVE+TRK+ R+ + + Sbjct: 352 LMRHLGDVVSKDPVKTTVVDMTRLNLVEVTRKKVRKPLYEQI 393 >UniRef50_A8RTZ4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTZ4_9CLOT Length = 385 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 128/401 (31%), Positives = 204/401 (50%), Gaps = 21/401 (5%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+V + A + G + ++ +E + ++GNIY G+V +V+ + AAF+DIG Sbjct: 3 KLVVTRRGDKVCTAVVSDGKVSQLMLEPDTADSLLGNIYIGKVQKVVSNINAAFIDIGPG 62 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + + R E ++ G +L+VQV KD + +K +T + Sbjct: 63 CTGYYSLQE------------------RWKPERLKTGDELVVQVSKDAVKSKAPVVTERL 104 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC--DEQGGFIIRTAAEGVGEAE 181 + RY V G + +G S +I S + RL++++ + G I+RT A V E Sbjct: 105 SFTGRYCVLTVGKTGIGFSAKIRDASYKARLRELLECDLAGTKDLGIIVRTNAVTVEECA 164 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 + + A L R W ++ LY L +RD L+ I D + Sbjct: 165 VREELAELMRTWQRLSAEAGCRVCYSCLYRALPGYIAAIRDSFGGTLEEIITDVPEYHRE 224 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 L + E +L Y P+ L+ +E ++AL + V LKSGGYL+I+ TEAM Sbjct: 225 LKAYLEMCQKEDAGRLTLYEDSLLPLGKLYSLETAFEKALGKNVWLKSGGYLVIEPTEAM 284 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG + G + + DTI+ N+EA I RQ+RLRNL GIII+DFIDM E+ R+ + Sbjct: 285 TVIDVNTGKYSGRKKMQDTIYKINMEAADEIGRQIRLRNLSGIIIVDFIDMEREEDRKAL 344 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 L L + +S+D VKT+V +AL LVE+TRK+ R+ + + Sbjct: 345 LAHLVEVVSRDPVKTTVVDMTALNLVELTRKKVRKPLHEQV 385 >UniRef50_C9XNN6 Ribonuclease g n=8 Tax=Clostridium RepID=C9XNN6_CLODC Length = 473 Score = 419 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 157/486 (32%), Positives = 259/486 (53%), Gaps = 22/486 (4%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++++ + A ++ L E+ +E + V NIY+G V +V+PG++A FVDIG Sbjct: 2 KKIVIESLIGSQKTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDIGF 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K A+L ++ GQD++VQ+ K+ +GTKGA+L T+ Sbjct: 62 KKLAYLQLKK---------------------GSTIKSGQDILVQINKEEIGTKGAKLNTE 100 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I++ RY+V++P +S +I E ER RLKK+ E G IIRT A+G E+ Sbjct: 101 ISISGRYIVYIPSNDRTTISNKITDEKERFRLKKITKAVNKENLGLIIRTEAQGCTHDEI 160 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D LK + +++ K LY L A + ++D + +++ I +S Y L Sbjct: 161 KKDIEELKLKYENILKEYKLGIGPKLLYKSLDFATKYVKDNVNDDIESIITNSYDKYSEL 220 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 KL + +FDL+ +E++I++ L +KV LKSGGYLII++TEA+T Sbjct: 221 KSILRGIDKTYVDKLCL-EENRDVFDLYRIESKIEKLLNKKVWLKSGGYLIIEKTEALTV 279 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+NTG F+G LD+T++ TN+EA + I RQL +R++ GIIIIDFIDM+ + H++ +LH Sbjct: 280 IDVNTGKFIGTGKLDETVYKTNLEAAKEIVRQLIIRDIAGIIIIDFIDMHKKKHQKEILH 339 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 LE+ +KD+ K V G + LGLVE+ R+R +ESI+ CP C G T+K+V + Sbjct: 340 ILEEEFNKDKRKAEVLGMTKLGLVEVARRREKESIDKYYLMSCPCCDGEQTIKSVHYILD 399 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 I +EI+R+ +V + + E +K + ++ ++ + Sbjct: 400 SIEKEIMRISEHTVYKNIMVEFNDFIFEQIKEYYMDIIDKIGEKYNIKISLNANSTLKHN 459 Query: 483 QFDVVM 488 + +V+ Sbjct: 460 KTNVIF 465 >UniRef50_D0JBK5 Ribonuclease G n=2 Tax=Blattabacterium RepID=D0JBK5_BLASB Length = 510 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 139/507 (27%), Positives = 253/507 (49%), Gaps = 31/507 (6%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M EL++N E +A ++ G L E+H + ++ VG+IY G V ++L G+ AA +DI Sbjct: 1 MNKELIINAEEQEVEIALLEEGQLLELHRDVFNKKFSVGDIYLGIVKKILYGLNAAIIDI 60 Query: 61 GLDKAAFLHASD-----------IMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVK 109 G K AFLH +D I + + + +K+ I +++ GQ ++VQ+ K Sbjct: 61 GHSKGAFLHYNDLGFQINKILELISMNRKFFSNNFEKKENRNSIDKILHPGQRILVQISK 120 Query: 110 DPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFI 169 +P+ KG +LT+ I +P RYL+ +P + + +S++I++ E RL + + + G I Sbjct: 121 EPISNKGPKLTSKICIPGRYLILIPFSEKISISKKIKNAKEESRLLSYIRKIKPHEFGII 180 Query: 170 IRTAAEGVGEAELASDAAYLKRVWTKVMERK-KRPQTRYQLYGELALAQRVLRDFADAEL 228 IRTA+ E L + +L + W K ++ K P ++ E++ +LRD + + Sbjct: 181 IRTASHNKREEVLNEELIFLIKKWKKTLKNLIKLPPPPVRVLSEISKTSCLLRDTFNDDF 240 Query: 229 DRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKS 288 I ++ + + + S PE + +++Y G PIF+ + +E +IQ L R V L++ Sbjct: 241 KSIYCNNNFLCQEIHSYLSLIAPEKINIIKYYKGNIPIFEKYGIEKQIQIFLGRNVPLEN 300 Query: 289 GGYLIIDQTEAMTTVDINTG------AFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGG 342 G YLII+ TEA+ +D+N+G D I N+ A IARQLRLR++GG Sbjct: 301 GAYLIIEHTEALHVIDVNSGMNNHMKKNCTESERIDNILKINLLAATEIARQLRLRDMGG 360 Query: 343 IIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLC 402 II++DFIDM+ R+++ L++ + DR K + + GLV+ TR R R ++ + Sbjct: 361 IIVVDFIDMSEPIQRKQLYEHLKEKMKNDRAKHKILPPNKFGLVQFTRHRVRPELKVNIN 420 Query: 403 NECPTCHGRGTVKTVETVCYEIMRE---IVRVHHAYDSDRFLVYASPAVAEALKGEESHS 459 NE K+ ++ + I R + + + + ++ V+ LK Sbjct: 421 NE----------KSKDSPIHYIHRLEFVLESIIKNKNHQKIQLHIHSFVSAYLKKGFPSI 470 Query: 460 LAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + + K +++ + ++ + Sbjct: 471 QQKWLLKYKKWIQIIPRDSFGYTEYKI 497 >UniRef50_A9KMH0 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMH0_CLOPH Length = 404 Score = 416 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 132/406 (32%), Positives = 221/406 (54%), Gaps = 12/406 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ +L+V A +G + +++++RE +GNIY G+V ++ + AAFV+I Sbjct: 1 MSGKLIVTKMDDNIVTALYEGNQMIQVNVDREEEVSSLGNIYIGKVKNIVKNINAAFVEI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 K +L +D++ FT S+ V G +L+VQV+K+ + TK +T Sbjct: 61 SDRKMCYLPLADVVNPI----------FTHAKSSDKVNIGDELVVQVIKEDIKTKAPVVT 110 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T I +Y+V M G +G+S +I SE +R+RL+ +V+ + EQ GF++RT A + Sbjct: 111 TSIAFTGKYVVLMHGTKTIGISSKIGSEQKRKRLRSLVSPFLGEQYGFVLRTNAVEAEDN 170 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 + + LK+ + +++ LY L +RD +L+ I D Y+ Sbjct: 171 LIVEEIEQLKKQYDRILTYGIYRNRFSLLYKTLQPFLCAIRDGFAKDLEAIITDDLSLYD 230 Query: 241 ALLEFTSEYIPEMTSKLEHYTGR-QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + E+ +E+ E KL Y + + L+ +E ++ RAL KV L GG L+I TEA Sbjct: 231 EIKEYLTEHQREDIGKLTFYQDKLLALSKLYSIETKLSRALREKVWLPCGGSLVIQPTEA 290 Query: 300 MTTVDINTGAFV-GHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 +T +D+NTG V +N+ +T N+EA + IA Q+ LRNL GIII+DFIDM +ED + Sbjct: 291 LTVIDVNTGKAVSKKKNVQETFLKVNLEAAEEIAAQICLRNLSGIIIVDFIDMISEDAKT 350 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNE 404 ++L ++ L KD +KT++ +AL LVE+TRK+ R+ + + + Sbjct: 351 QLLRVFDEYLRKDPIKTTLVDMTALNLVEITRKKVRKPLHEQMKHT 396 >UniRef50_A9RK39 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RK39_PHYPA Length = 727 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 135/467 (28%), Positives = 232/467 (49%), Gaps = 21/467 (4%) Query: 40 NIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQ 99 I + V + G F D +K S + V + Sbjct: 214 GIARSIVVDRVSGEAENFKDSPEEKVQVKKLSKAWEPHRQGSPITVNFGRKFSKWRNVEE 273 Query: 100 GQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVA 159 G ++VQV K+ +G KG RLT +L R+ V +P + VGVS RI ER RLK + Sbjct: 274 GMPIIVQVKKESMGKKGPRLTAFPSLAGRFWVLIPRGNSVGVSARITGP-ERRRLKLLAQ 332 Query: 160 EYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMER----------KKRPQTRYQL 209 + E G +RT A G + EL D L W ++ME+ + L Sbjct: 333 KLQPEDLGITVRTEAIGHEQEELERDLTRLMDAWKEIMEKAAAAAVAVERGEEAAVPVLL 392 Query: 210 YGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDL 269 + E+ ++RD ++ R+ VDS +++ ++ + E P + +++ Y+G+ PIFD Sbjct: 393 HREMGQTLTIIRDLFTEKVSRVVVDSAQSFQEVINYLQEVAPHLMNRVVLYSGKVPIFDK 452 Query: 270 FDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDIN--TGAFVGHRNLDDTIFNTNIEA 327 F+VE+++ + +V+L +GGYL++ +TEA+ ++D+N TG + I N N+ A Sbjct: 453 FNVESDLDKFFSERVKLPNGGYLVMQETEALVSIDVNGGTGMLGHSMKQREAILNVNLAA 512 Query: 328 TQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVE 387 + IA ++RLR++GGII++DFIDM+N + + V + +A+ +DR K S++ S GL+E Sbjct: 513 AKQIAHEIRLRDIGGIIVVDFIDMDNHEDEKLVYEEMRRAIQRDRSKVSISEISEYGLME 572 Query: 388 MTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDS--------DR 439 MTRKR R S+ + + + C C G G V+ +ET +I R I RV + + Sbjct: 573 MTRKRVRPSVTYTIHSSCACCKGTGRVEALETTLSKIERAIRRVLADHPDVSSDASTWPQ 632 Query: 440 FLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 L+ P++ E LK + + ++ + + +++ + QF+V Sbjct: 633 ILLRVEPSMLEFLKSWKKKRIIQLGHSLRVWINLKLGMELSHGQFEV 679 Score = 76.4 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 4/98 (4%) Query: 4 ELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 E+L+N + + R+A ++ + E IE + VGNIY GRV ++LPGM FVDIG Sbjct: 73 EILINTSECTMQRMAILENKKVVEFSIEPVNTKVQVGNIYLGRVKQLLPGMSGVFVDIGG 132 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQG 100 + A L DI + ++ V G Sbjct: 133 PRLALL---DIARNQYPYTFPPVCGSGNHLSTDSVSGG 167 >UniRef50_A5ZQK1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZQK1_9FIRM Length = 396 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 119/403 (29%), Positives = 195/403 (48%), Gaps = 15/403 (3%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 +L+N P T A + + E+ +E ++ + NIY G+V + +QAAFV + Sbjct: 1 MLLNEVPC-TVCAIVQDQKVIELRLEPSGKKNTLNNIYVGQVENIAANIQAAFVRLSDSV 59 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 +L + R + +R G L+VQ+ ++ + K LT ++ Sbjct: 60 NGYLPLNQCTNAIYTDG---------RKTDQPLRPGDQLLVQINREAMKGKLPALTANLN 110 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE---YCDEQGGFIIRTAAEGVGEAE 181 +YLV G +G S ++ S+ E L K + E + + G I RT A + E Sbjct: 111 FSGKYLVLTTGNRKIGFSNKL-SKEESSLLNKWLEEERSLPEREYGIIARTNAAEASKEE 169 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 + LK+ + KV + LY +RD +LD I D +E Sbjct: 170 FFHELEMLKKQYEKVAVHGRNRTCYSLLYEAEPFYLAAVRDVYTRDLDEIVTDIPEIHEK 229 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + SE+ P+ L+ Y + P++ L+ +E I K+ LKSGG+L+I QTEA Sbjct: 230 IFAYLSEFQPDKLEILKLYQDKLLPLYKLYSLEGAIDEVCHEKIWLKSGGFLVIQQTEAF 289 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 ++D+N+G + G + ++T N+EA IARQ+RLRNL GII++DFI+M N DH+ + Sbjct: 290 VSIDVNSGKYTGKKKAEETYRKINLEAAAEIARQIRLRNLSGIILVDFINMENPDHQDEL 349 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 H L++ L KD VK + L ++EMTR++ R + L Sbjct: 350 FHVLQKYLRKDPVKCKAIDITPLHILEMTRQKVRRPLIEDLRE 392 >UniRef50_C0D9K4 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D9K4_9CLOT Length = 400 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 127/403 (31%), Positives = 200/403 (49%), Gaps = 16/403 (3%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L++ + A G + +E E ++ NIY G+V +V+ + AAFV+IG Sbjct: 3 KLVITRWRDKVLTAVFSGRKPLALTLEPEQGGSLLNNIYIGKVQKVVKNISAAFVEIGGG 62 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + +L P G + + G +L++QV KD + TK +T + Sbjct: 63 RVGYLPLEGTCPRVLNRPGAKN-----------LAPGDELIIQVEKDAVKTKAPVVTCRL 111 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG----GFIIRTAAEGVGE 179 + RY V G V S R+ +S + R++ V+ E +G G I+RT A GE Sbjct: 112 SFAGRYCVLTAGKPGVNFSSRLTDQSFKRRVRPVLEEAVRARGHEACGLIVRTNAGEAGE 171 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 +L ++ A L + V + LY L +RD L+ + D Y Sbjct: 172 EQLLAELAVLFDQYESVQNQGNHRVCYSCLYRSLPGYMASVRDSLGGSLEAVLTDQADVY 231 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 E L + + + KL Y + L+ ++ ++ AL ++V LKSGGYL+I+ TE Sbjct: 232 EELKHYLALNQQKDLEKLSFYDDPLLSLGALYSLDKVMEEALGKRVWLKSGGYLVIEPTE 291 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 AM +D+NTG + G + L +TI N+EA IA Q+RLRNL GII++DFIDM ++R Sbjct: 292 AMVVIDVNTGKYSGKKTLQETILKINLEAAVEIAHQIRLRNLSGIILVDFIDMEPGENRE 351 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 +L +L +A+S D VKT+V + L LVEMTRK+ R + + Sbjct: 352 ILLKALSEAVSADPVKTAVVDMTKLNLVEMTRKKVRRPLHEQV 394 >UniRef50_P51211 Ribonuclease E homolog n=2 Tax=Porphyra RepID=RNE_PORPU Length = 511 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 133/459 (28%), Positives = 232/459 (50%), Gaps = 30/459 (6%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 MT ++++ + A + G +Q++ + V +IY G V ++ G+ AAFVD+ Sbjct: 1 MTNTIVISCLHN--IAAILYCGQIQKLVV--ANAHYQVSDIYLGTVDKIFSGINAAFVDL 56 Query: 61 GLDK-AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G ++ + F+H SD P +K++ + +I+ ++ Q ++VQ++K+P KG RL Sbjct: 57 GKNEYSGFIHISDTGPL--------KKKYYINNITNILTIRQKILVQIIKEPTLNKGPRL 108 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T +ITL RY+V MP + + +S++I E ER LK + G + R +A G+ E Sbjct: 109 TANITLSGRYIVLMPFSQAICISRKIYDEDERHYLKALAILIKPPTMGLLFRPSAIGIDE 168 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + S+ LK W + + LY + + ++V+RDF D I +DS L Sbjct: 169 EIILSELTNLKEQWYFIQKSAINNCAPVLLYKDEDIVKKVIRDFYDNNTKNIVIDSNLGL 228 Query: 240 EALLEFTSEYIPEMTS---KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 + L + + + +S L+ Y+ + I D F + I RAL KV+L GGY+ I+ Sbjct: 229 KQLNYYINTWQCNFSSTIPSLQLYSSNKCILDTFRINQAISRALIPKVDLILGGYMFIET 288 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 EA T +D+N+G+F + +T+ TN A IA QL++RN+ G+IIIDFIDM ++ Sbjct: 289 LEAFTIIDVNSGSFNNSTSARETVLKTNCSAATEIAYQLKIRNIAGVIIIDFIDMESQRD 348 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 + ++L ++ LS D K + S LGLVE+TR+R +S+ ++ + Sbjct: 349 QLQLLEHFDKELSLDDAKPQIVQLSELGLVELTRRRKGKSLYELV--------------S 394 Query: 417 VETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGE 455 ++ + ++ ++ S S +V L E Sbjct: 395 NDSNYFHFFIQLEQLDSIKPSSYKSKRLSSSVKSWLFSE 433 >UniRef50_Q8GZQ4 Endoribonuclease n=8 Tax=core eudicotyledons RepID=Q8GZQ4_ARATH Length = 996 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 129/440 (29%), Positives = 226/440 (51%), Gaps = 23/440 (5%) Query: 69 HASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSR 128 H++D + VA + + + VR+G ++VQVVK+ LGTKG LT L SR Sbjct: 506 HSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 565 Query: 129 YLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAY 188 + V + +GVS++I S ER RLK + + G +RT A G EL D Sbjct: 566 FWVLLTRCKRIGVSKKI-SGVERTRLKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDLDG 624 Query: 189 LKRVWTKVMERKKRPQT----------RYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 L W + + K L+ + V++D+ + +++++ VDS T Sbjct: 625 LLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSPRT 684 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 Y + + + P++ +++E + P+FDL+++E EI+ L ++V L +GG L+I+QTE Sbjct: 685 YHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTE 744 Query: 299 AMTTVDINTGA--FVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 A+ ++D+N G F + + I N+ A + IAR++RLR++GGII++DFIDM +E + Sbjct: 745 ALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADESN 804 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 +R V +++A+ +DR V+ S GL+E+TRKR R S+ ++ C CH G V+ Sbjct: 805 KRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRVEA 864 Query: 417 VETVCYEIMREIVRVHHAYDSD----------RFLVYASPAVAEALKGEESHSLAEVEIF 466 +ET +I +EI R + RF++ ++ L + LA + Sbjct: 865 LETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHMSSFLTTGKRTRLAILSSS 924 Query: 467 VGKQVKVQIEPLYNQEQFDV 486 + + +++ + + F+V Sbjct: 925 LKVWILLKVARHFTRGTFEV 944 Score = 71.7 bits (175), Expect = 5e-11, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 1/101 (0%) Query: 2 TAELLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 +L+N + R+A ++GG L E+ +E ++Y G +++ +P M AFV+I Sbjct: 328 ATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNI 387 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQ 101 G + +F+ + + D S ++ Sbjct: 388 GSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMND 428 >UniRef50_C6LLP4 Cytoplasmic axial filament protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLP4_9FIRM Length = 408 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 131/419 (31%), Positives = 216/419 (51%), Gaps = 14/419 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +L++ A G E+ +RE + GNIY G+V V+ +QAAFV+I Sbjct: 1 MKNKLIITRLWDGIATALYLDGRAAELSFDRETETPLPGNIYIGKVKNVVKNIQAAFVEI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 + +L S+ + + FT + S + G +L+VQ+ ++ + TK +T Sbjct: 61 EDGISCYLPLSE----------KAEPYFTNKTNSPRLVAGDELLVQIAREGVKTKAPTVT 110 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 +I+ P +YLV G + G+S ++ +++ERERL+++ + G+I+RT A E Sbjct: 111 ANISFPGKYLVLTSGKTQTGISAKL-AKAERERLQQIAGRLPEGNFGWILRTNAAEAEEE 169 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 E+ +A L + + + + + LY A L+D E + I D + Y+ Sbjct: 170 EILREAETLAKRFEDICRTARYRTCKSCLYRSPAAWLAHLKDIRQTECEEILTDDQGLYD 229 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 L + +E +P KL Y R P++ L+ +E + AL +V LKSG YL+I TEA Sbjct: 230 RLQAYLAENLPADAEKLSFYEDRLLPLYKLYSLEGAFEEALRERVWLKSGAYLVIQPTEA 289 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T +D+NTG + +T N+EA + ARQ+RLRNL GII+IDFI+M++++ +R Sbjct: 290 LTAIDVNTGKCERGKKASETFRKINLEAAREAARQIRLRNLSGIILIDFINMDSKEEEQR 349 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 +L +L+ L KD VK + LGL E+TRKR ++ + + P GR E Sbjct: 350 LLAALDAELQKDPVKAYAVDITPLGLAEVTRKRVQKPLAEKMRQSVP--QGRNPHCAQE 406 >UniRef50_Q3AF57 Ribonuclease, Rne/Rng family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AF57_CARHZ Length = 392 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 133/414 (32%), Positives = 216/414 (52%), Gaps = 30/414 (7%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 MT L+ + P A + G + +R + + +IY G+V +V+PG+QAAFV++ Sbjct: 1 MTKTLVFHRQPEYDLAAVMVDGSPFSLFAKRRDEQTQINDIYLGKVEKVVPGLQAAFVNL 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL K +L +I V+ G ++V+VVK+P KGA+L+ Sbjct: 61 GLAKNGYLPLDEIN----------------------VKPGDVVLVRVVKNPTAQKGAKLS 98 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T I+LP R LV+ P G+S+++ E +RE +V+ GGFI+RT A E Sbjct: 99 TVISLPGRNLVYFPQKEMKGISRKLT-EDKREYYHRVLENLNLP-GGFIVRTLAGE--EE 154 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 +L +A L W ++ER K Q LY E L LR+ D + + VD Sbjct: 155 DLLQEAKRLYEEWQGILERSKTAQAPALLYKEDDLFTWCLRELLDKDFTALYVDDFE--- 211 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 LLE ++ L + + F++ +++ +V LK+GG L+I++TEA+ Sbjct: 212 -LLEIGQKFRERFRVLLPPIYKSFNVMEEFNLIRTMEKLTRERVWLKNGGILVIEKTEAL 270 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+N+G F G ++L +T F N+EA + IA+Q+RLRN+GGII++DFI + E+ + Sbjct: 271 TAIDVNSGKFTGKKDLKETAFKINLEAAREIAKQIRLRNIGGIIVVDFISLLEEERWEEI 330 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L +E+ +D+ K + G + GLVE+ R++ SI + +EC C G G + Sbjct: 331 LRVMEEEFLRDKAKVKITGKTPSGLVEIARQKIGLSIGELFTHECSVCQGTGRI 384 >UniRef50_C3WSU7 Ribonuclease G n=6 Tax=Fusobacterium RepID=C3WSU7_9FUSO Length = 458 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 136/467 (29%), Positives = 249/467 (53%), Gaps = 28/467 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M L+++ + ET++A ++ L E++IER ++ I GNIYKG+V +L + FVDI Sbjct: 1 MKKYLILSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL+K AFL E +K + +I L+VQ +P KGA+LT Sbjct: 61 GLEKNAFLSF------------ENKKDISKYNID------DKLIVQAETEPRDEKGAKLT 102 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 D ++ LV +P + ++ +S++I+ E RLK + + G I+RT +EG E Sbjct: 103 LDYSINGENLVLLPKSKNLSISKKIKDIEEVNRLKNI---FLSTDNGLILRTNSEGKSEE 159 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L + L+ + ++ + ++ LY ++ ++V+ D ++ +D ++ Sbjct: 160 NLLEEYRRLENIDNQINKDFEKINV-GLLYDVNSILKKVVA-LFDDSTEKFIIDDEHIFK 217 Query: 241 ALLEFTSEY-IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + E ++ KL Y + IF+ +++ ++I+RAL+RKV L SG Y+II++TEA Sbjct: 218 EIKYLLEEIGKKDLIKKLRKYFKDEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEA 277 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++D+NTG G++ + IF TN+EAT+ IARQ++LRNL GIIIIDFIDM +++R Sbjct: 278 LISIDVNTGQNTGNKTSQEIIFQTNLEATKEIARQIKLRNLAGIIIIDFIDMKKFSNKKR 337 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 +L ++ LSKD+V+ + ++ LGL++ TRKR + + +C C G G + + Sbjct: 338 ILEKFKKYLSKDKVEINSVEYTNLGLIQFTRKRQGKELALYYREKCQYCEGIGYFLSKDR 397 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVA----EALKGEESHSLAE 462 + ++ ++ + D + ++ + + + + + + Sbjct: 398 IILNLLEDLNNQIKSQDIKKIVIRTKKDIIKELNKYIDNNKIEYIED 444 >UniRef50_UPI0001973AFC ribonuclease n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973AFC Length = 441 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 128/426 (30%), Positives = 210/426 (49%), Gaps = 24/426 (5%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 + +LL+ + A + G + +++E RGI+GNIY G+V ++ + +AFVD+G Sbjct: 5 SNKLLITRWNGQILTALTEDGKCRSLNLEPADSRGILGNIYIGKVKNIVKNINSAFVDLG 64 Query: 62 LDKAAFLHASDIMPHTECVA-----------------------GEEQKQFTVRDISELVR 98 + + + H ++ F VR L + Sbjct: 65 SGQIGYYSLKENKRHLFTDEIAAAQAGNRKKTEGEENGTEEGWMKKSDGFPVRAKERLPK 124 Query: 99 QGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVV 158 G +++VQV +D + TK LT+++ +YLV G + +G S +I + +E LKK++ Sbjct: 125 AGDEIIVQVERDAVKTKDPVLTSNLNFTGKYLVLTLGKNQIGFSGKIRDGAWKESLKKIL 184 Query: 159 AEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQR 218 E D+ G I+RT A + + LK +++ L Sbjct: 185 EEKKDDSFGIIVRTNAREADIQSILRELELLKERKSRLFATAGWRTCYSLLSSSEPSYVN 244 Query: 219 VLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQ 277 +RD L+ I D R Y+AL + E E KL Y P+ L+ ++ ++ Sbjct: 245 SIRDTYAENLEAIVTDDRDCYDALRTYMEENQREDLEKLSFYEDTMVPLAKLYSLDTAME 304 Query: 278 RALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRL 337 +AL + V LKSGGYL+I+ TEA+T +D+NTG + G + +TI N EA IARQ++L Sbjct: 305 QALGKHVWLKSGGYLVIEPTEALTVIDVNTGKYAGKKTQAETILRINREAAVEIARQMQL 364 Query: 338 RNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESI 397 RNL GIII+DFIDM+ ++ ++ ++ LE L +D VKT + + LGLVE+TRK+ R + Sbjct: 365 RNLSGIIIVDFIDMDADEDKKELMRLLELELLRDPVKTVLVEMTKLGLVEITRKKIRRPL 424 Query: 398 EHVLCN 403 + Sbjct: 425 AEQVRE 430 >UniRef50_C6J9J6 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9J6_9FIRM Length = 398 Score = 399 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 115/405 (28%), Positives = 201/405 (49%), Gaps = 15/405 (3%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++ + P AY + G + E+ E + +GNIY G++ + + AAFV I Sbjct: 4 TQMNIRQIPCYV-CAYEEDGKVMELRFEPVGEKSSLGNIYVGQIENIAANIGAAFVQISA 62 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + +L SD +V+ ++ G +++VQ+ ++ + K +TT+ Sbjct: 63 GEKCYLQLSDAPNAIYA---------SVKKGDRPLKAGDEILVQISREAMKGKLPAVTTN 113 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC---DEQGGFIIRTAAEGVGE 179 + +YLV G G+S ++ ++ +R R+ K + D++ G I+RT A + Sbjct: 114 LNFTGKYLVLTTGDKKFGLSSKLSND-DRSRISKWMEAEVNRPDKEFGIIVRTNAADASK 172 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 E+ + YLK ++ K + +Y +RD L+ I D Sbjct: 173 EEILKELEYLKGLYHKAAVDGRSRTCFSCVYRTEPFYISAVRDANSRNLEEIITDIPEIS 232 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + ++ + PE KL Y + P++ L+ +E ++ KV L SGG+L+I QTE Sbjct: 233 RQISDYLNSNSPEEKEKLRFYDDKLLPLYKLYRLETVLEEIQHEKVWLNSGGFLVIQQTE 292 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A ++D+N+G F G + + +T N+EA + IARQLRLRNL GII+IDFI+M N+DH+ Sbjct: 293 AFVSIDVNSGKFTGKKKMQETYRKINLEAAKEIARQLRLRNLSGIILIDFINMENQDHQD 352 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 + H L++ L KD VK + L ++E+TRK+ R+ + + Sbjct: 353 ELFHVLQKYLRKDPVKAKAVDITPLHILELTRKKVRKPVIEEIRE 397 >UniRef50_C0ERY0 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERY0_9FIRM Length = 403 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 124/401 (30%), Positives = 207/401 (51%), Gaps = 12/401 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L++ Y G+ E++ E + ++ I+GNIY RV RV G+ AF++IG Sbjct: 5 KNKLVITEKEGVICYGYFQDGVPTELYCEPKEQQSILGNIYAARVERVAEGIHGAFLEIG 64 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ + S P E++ + G ++VQ+ KD + TK T Sbjct: 65 DNQKCYYSLSAEQPVKLSPGHEDK-----------LYGGDIILVQITKDAVKTKLPVGTG 113 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 +I+L +Y VF G+S++I + ERERL+ ++ +Y E+ G I+RT A GV E Sbjct: 114 NISLDGKYFVFTLTDKRTGISKKIRNTVERERLETLLKKYTREEYGIIVRTNAAGVSEET 173 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L + L+ + ++M + K + LY E + ++ LD I D + Sbjct: 174 LTKELELLQLRYEELMRKAKIATGKTLLYREPPHYITLGKELPAKALDEILTDHAEVFTE 233 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 L E+ + T+K+ Y +++L+ + + A + + LKSG L+I+ TEAMT Sbjct: 234 LKEYYKQTSESDTTKISFYEDTYSLYNLYRFAHYYEEAYGKYIWLKSGASLVIEHTEAMT 293 Query: 302 TVDINTGAFVGHRNLDDT-IFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+NTG+ + + +DT + N EA + IARQLRLRN+ GII+IDFI+M + + ++ Sbjct: 294 VIDVNTGSVLKKKKQEDTLFYQINREAAKEIARQLRLRNISGIIMIDFINMKDTAQKEKL 353 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 L L+ KDRV +V +AL LVEMTR + R+ + + Sbjct: 354 LSLLDSECKKDRVHCNVIDMTALNLVEMTRSKVRKPLHEQI 394 >UniRef50_A6LQR5 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium RepID=A6LQR5_CLOB8 Length = 482 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 142/491 (28%), Positives = 251/491 (51%), Gaps = 31/491 (6%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 E+ V RVA L E +E I+G IYKG++ ++P + + FVD+GL Sbjct: 2 KEIFVERRERILRVAIKSNNELIESIVEESKNEPIIGEIYKGKIKNIIPAINSVFVDLGL 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 DK +L+ SD + + +++G D++V+V+K+PL KGA+LT Sbjct: 62 DKEGYLYYSDELKA------------------KGIKKGDDILVEVLKEPLNDKGAKLTAK 103 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 +++P +Y+V + S+RIE + ++ L + + +RT V L Sbjct: 104 VSIPGKYIVLNCYEQGIEFSKRIEDKEKKIELLSNIEPL--KDVCITVRTEGANVDINIL 161 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 ++ + L + + ++ K ++YGE ++L +F+ E+ +I VD+ + ++ + Sbjct: 162 KNEISKLYDEFQNIDKKMKHSLGVRKIYGEDLTLTKLLMNFSGEEIIKIYVDNSIDFDKI 221 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 F + K+E Y G + +FD + +E E+ R KV L+ GGY++ID+TEAM Sbjct: 222 SSFAKG---QENLKIEKYEGYRKLFDFYGIEKELLRLRHNKVNLQCGGYIVIDRTEAMYV 278 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+G + ++ + TI TN+EA + I +Q+RLRNL GII+IDFIDM ++ R V+ Sbjct: 279 IDVNSGKNIKEKSFNKTILETNLEAAREIGKQIRLRNLSGIIVIDFIDMRDKSQRDIVMD 338 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +L+++L D+ + F+ L LV++ RKR +SI + EC C GRG + + + Sbjct: 339 ALKESLRLDKGNVKIFPFTQLDLVQIARKRQGKSIYEYMEEECSLCKGRGIILKLSYIEG 398 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEV-----EIFVGKQVKV---Q 474 I +IVR+ + F + + ++ + E+ EI++ + + Sbjct: 399 LIKNDIVRMQEESSINCFHIQMDSVYKDRIRENIFEFMKEIDGLDKEIYLNYVDNIEGYK 458 Query: 475 IEPLYNQEQFD 485 IEPL Q Q D Sbjct: 459 IEPLIFQGQKD 469 >UniRef50_Q1V2D3 Ribonuclease E/G n=5 Tax=Bacteria RepID=Q1V2D3_PELUB Length = 619 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 106/414 (25%), Positives = 209/414 (50%), Gaps = 13/414 (3%) Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 P E + + I E+++ Q +++QV+KD G KGA L+T I++ +Y+V MP Sbjct: 160 PVLHGRKPETRFRSKRYKIQEVIKPNQVILIQVLKDERGQKGAALSTFISIAGKYIVLMP 219 Query: 135 GAS-HVGVSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVGEAELASDAAYLKRV 192 G+S++I + ER++++ ++ + ++ G I+RTA + ++ D L + Sbjct: 220 NTPKGGGISRKIFNPGERKKIRTILNDIVIPKEMGLIVRTAGSNKTKNDIDHDLQTLIKT 279 Query: 193 WTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE 252 W ++ E ++ E + +R LRD D + I ++ Y+ F +P Sbjct: 280 WNEIKENALNSIAPSLIHQESDIIKRTLRDMYDESTNSIVIEGNEGYKKAQNFMKLMMPS 339 Query: 253 MTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG 312 K++ Y + P+F ++E ++ + + +++LKSGGYL+I+ TEA+ ++DIN+G+ + Sbjct: 340 HVKKIKKYREKVPLFFKENIEEKLNQIYDSEIKLKSGGYLVINPTEALVSIDINSGSSIK 399 Query: 313 HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 +N++ T +TN+EA + I+RQ+++R+L G+IIIDFIDM + +RR V L++ DR Sbjct: 400 QKNVESTALDTNLEAAEEISRQIKIRDLSGLIIIDFIDMLSFGNRRLVERKLKEQCRTDR 459 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVH 432 + + S GL+EM+R+R RES T E+ +I++ + Sbjct: 460 ARIQIGRISTFGLLEMSRQRLRESAVKWKVT-----------LTDESFAMKILKLVEVKA 508 Query: 433 HAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + + +++ +K L E ++ + + ++ + Sbjct: 509 VLTKAKFVELKICEKISDFMKENFIEDLKYFEEKNLIKIDIIADNSLIIPEYII 562 Score = 82.5 bits (203), Expect = 3e-14, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M L ++ + P+ETRV G +++ E I NIY G+VSRV P +QAAF+D Sbjct: 1 MEKNLYIDASHPNETRVVLKSGENIEDYEYEGLKNNLIKNNIYLGKVSRVEPSLQAAFID 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEE 84 G D+ FL +DI + + Sbjct: 61 FGRDRHGFLSFNDIQSDYYQIPQSD 85 >UniRef50_Q97JL8 Ribonucleases G/E family protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JL8_CLOAB Length = 481 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 126/487 (25%), Positives = 242/487 (49%), Gaps = 27/487 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++ + +VA +D G +E IE E G IYKG V ++P ++ AFVDIG Sbjct: 2 KKIFIERCTDFLKVAVLDNGEFKECFIEDEKEEIYSGAIYKGVVKNIVPAIKCAFVDIGN 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K +L+ + +++G +++V++VK+ +G+KG +++ Sbjct: 62 GKNGYLYMDSKFNNVN------------------IKKGDEMLVEIVKESIGSKGPKVSNA 103 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 IT+P RY V + + + +S++I + LK+ V + E G +IRT A+ V ++ Sbjct: 104 ITIPGRYSVIITLNTDINISKKISDSKYIKMLKENVKK--PEDVGVMIRTNAQNVSLEDI 161 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELD--RIRVDSRLTYE 240 ++ L + + ++ K +Y +R++RD + ++ + V+ + ++ Sbjct: 162 NNEIENLYETYVGIRKKAKYSNKVGIVYNAGGTIERIMRD--NEDVADLTVVVNDKKDFD 219 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + +M L+ + + + + E EI + ++RKV LK GGYLIID TEAM Sbjct: 220 NIQNYI-LTKKDMKCNLKLHDSNISLMEYYGFEREIVKLIDRKVMLKCGGYLIIDNTEAM 278 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+N+G + + NL T F TN+EA + ARQ+ LRNL GII+IDFID+ +E+ + ++ Sbjct: 279 HVIDVNSGKNIKNSNLARTAFLTNMEAAKEAARQIILRNLSGIIVIDFIDITDEEAKSKI 338 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 ++ L+Q KD+ KT V F+ L +V++ R+R +SI L +C +C G G E + Sbjct: 339 VNVLKQGFLKDKNKTIVYPFTELNIVQIARRRRGKSIYDYLEEKCDSCIGSGRKLNFEYM 398 Query: 421 CYEIMREIVR-VHHAYDSDRFLVYASPAVAEALKGEESHSLAEV-EIFVGKQVKVQIEPL 478 + +++R + + + + + + ++ + ++ + +P Sbjct: 399 KNLMRNKVIRFLEEHEKAKSIYIEMDKRYENKISLDVEGFIKDIGADNLSVYIEYKSKPD 458 Query: 479 YNQEQFD 485 + F Sbjct: 459 VFKINFR 465 >UniRef50_C5RGP2 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGP2_CLOCL Length = 475 Score = 392 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 128/462 (27%), Positives = 228/462 (49%), Gaps = 25/462 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 E+ + R+A D L +IE E + G IY G V ++P ++ AF+DIG Sbjct: 2 NEIFIEKDKPYLRIAIKDHEKLLACYIEEETEEAVPGQIYLGIVKNIVPAIKGAFIDIGK 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K AF+H D + +++G +V+V+++ K A +T+ Sbjct: 62 AKDAFMHL---------------------DNNRDLKKGDYFLVEVLREATELKSANVTSL 100 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 IT+P Y+V P + +S++I + +K+ + + G +R++AE V + Sbjct: 101 ITIPGTYVVVNPMEKALKISRKISNSKFINEVKEQLKDV--STYGITVRSSAENVDINII 158 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + L V K++ + K +Y + R+LRD+ + RI VD Y+ + Sbjct: 159 REEVQALNIVVDKIIAKGKYSLKPQLIYDDGGALGRILRDYINDGTKRIIVDDIKNYDLV 218 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 E + +++L + + IFD + +E EI +KV LKSGGY+II++TEA+ + Sbjct: 219 KENIEKL--HSSAELIMHEESRGIFDCYSIEKEILALRHKKVVLKSGGYIIIEKTEALYS 276 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+G G + T F TN+EA + IARQ+ LRNL GII+IDFI+M ++ + V+ Sbjct: 277 IDVNSGKSTGEVAISKTAFKTNLEAAEEIARQIILRNLSGIIVIDFINMKDKKEKTEVIK 336 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 LE A KD KT++ F+ + LV++TRK+ + I L C C G G + + Sbjct: 337 ILEAAFKKDNNKTTIYPFTDVNLVQITRKKRGKDIGSFLEESCKHCGGEGARLKWDYLKL 396 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVE 464 I +++++ + + F++ ++ + + + +E Sbjct: 397 LIKNQLIKLKGQHITKEFVITIDSKYKSEVQKKLTEFITFIE 438 >UniRef50_A8VZD2 Alanine racemase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZD2_9BACI Length = 473 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 152/475 (32%), Positives = 246/475 (51%), Gaps = 16/475 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M + V+ +E R A I+ G + E + R G I G+++ + GM AAF+DI Sbjct: 1 MKRTIAVHTGLTEARGAVIEDGRVTEWLMSPGPTRLETGMIITGQITDIHDGMDAAFIDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK FLH S++ + IS V +G L+++V++ TKG +LT Sbjct: 61 GSDKRGFLHKSELNRPDKGEDV---------PISRQVTKGAYLLLEVLRPGTDTKGPKLT 111 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I+ +Y V+MP + +V VS+++ SES RE + E E G IIRT AE Sbjct: 112 EKISFSGKYAVYMPFSRYVAVSKKMSSESVRESWRAFGKERLQEDEGLIIRTNAEEEDPE 171 Query: 181 ELASDAAYLKRVWTKVMERK-KRPQTRYQLYGELA-LAQRVLRDFADAELDRIRVDSRLT 238 + + L+ +V +P ++ + + LA R+ RDF E + D R Sbjct: 172 VIDREIDLLRAKADEVKRAFLDQPIKAGAVHVDPSALAARISRDFLADEDTEVICDGRQL 231 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 YE L+ E +P + + + + R+ + L++ E + + + V L +GG L+I++TE Sbjct: 232 YEELVRE-REVMP-LGASVSY--TRENVARLYEFERMMMQTVRPYVWLPNGGSLLIEETE 287 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 AMT +D+N+G F G NL T + TN++A + IAR+LRLR + GII+IDFIDM+ +D R+ Sbjct: 288 AMTVIDVNSGRFTGKENLRKTAYQTNLQAAKVIARELRLREVSGIILIDFIDMDTDDDRK 347 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL +L Q +DR + +V GF++LGLVEMTRK++R I ++ C C G G V T Sbjct: 348 DVLKTLRQGCKQDRTRVNVIGFTSLGLVEMTRKKSRMPIGEIMKEPCGCCGGTGRVDTAN 407 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKV 473 Y + + ++ + + + EAL + + ++ +G +V V Sbjct: 408 EQLYRVSEALQ-EAVQGKTESLWLDLNVRLYEALTSNQEDWASAIKARIGVRVYV 461 >UniRef50_Q0SR50 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium perfringens RepID=Q0SR50_CLOPS Length = 480 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 136/493 (27%), Positives = 246/493 (49%), Gaps = 33/493 (6%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++ V + RVA + +L E +IE E+ + G IYKG V RV+PG+++AF+DIG Sbjct: 2 RDIYVERRENLLRVAIKENNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGY 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K A++ + ++QG ++V+V+K+ G+KGA++T+ Sbjct: 62 SKQAYMILGEDEKD--------------------LKQGDGIIVEVLKEQFGSKGAKVTSK 101 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I+L RY V + + +S++IE+ ++ L+ + + G +RT A+ E+ Sbjct: 102 ISLAGRYCVLETSRNDISISRKIENLEFKKELEN--SLIKPSELGVTVRTKAQSASIFEI 159 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + L + + +V+ K ++ G+ L +++RD DA I VDS YE + Sbjct: 160 QEEIEELYKNYKEVIREGKFSLNPKKIMGKGDLINKIIRDDIDAYTSSIIVDSIEDYERI 219 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + S K+ Y + +FD + +E EI +V L GG ++I++TEAM Sbjct: 220 KDSISN---SEYLKVTLYDDARSLFDYYGIEKEILSLRNNRVNLNCGGDIVIEKTEAMYV 276 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+G H+N + T + TN A IARQ+++RNLGGII++DFIDM ++++++++L Sbjct: 277 IDVNSGKNTNHKNKEKTAYETNKNAAIEIARQIKIRNLGGIILVDFIDMYSQENKKKILK 336 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L+ D + + F+ LGLV++TR R +SI + C C+G G + + Sbjct: 337 ILKDEFKSDSQRAKIFPFTELGLVQITRYRKGKSIYEYIEENCLACNGHGKRLKLSYINL 396 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEI--------FVGKQVKVQ 474 + EI++ + F + + + ++G L E+ F + + Sbjct: 397 LLRNEILKKNGEGKIKDFHIEINSIYEKDIRGNIFEFLKEIGALDLNIYLNFQESKDFYK 456 Query: 475 IEPLYNQEQFDVV 487 +EPL + Q + V Sbjct: 457 VEPLIFKNQIESV 469 >UniRef50_A7HJB9 Ribonuclease, Rne/Rng family n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HJB9_FERNB Length = 463 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 141/480 (29%), Positives = 262/480 (54%), Gaps = 29/480 (6%) Query: 8 NVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAF 67 + + + A I+ GIL EI I + I GNIY G++ + +P ++AAFV + D+ AF Sbjct: 8 DGENEKAQAALIENGILAEIFISDDDEESIAGNIYIGKIEKFIPALEAAFVKLPDDENAF 67 Query: 68 LHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPS 127 L DI G + +++ Q ++VQ+ K+ TKG ++TT+I +P Sbjct: 68 LRIKDIKNEYLNFFGISK-----------LQECQKILVQIKKEGGNTKGPQVTTNIGIPG 116 Query: 128 RYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE-QGGFIIRTAAEGVGEAELASDA 186 RY+V+MP + +G+S++I +E++R+ L++V + + GFI+RT+ E + +A Sbjct: 117 RYIVYMPFSKSIGISRKITNENDRKHLREVGEKLKSKYNCGFILRTSCVESKEEYIEKEA 176 Query: 187 AYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFT 246 L + W +++ KR + ++ E + V+R+F E++++ +S + L + Sbjct: 177 EELHKKWEEIVNTFKRSRKTKLIHKESDSDEFVVREFLRKEVEQVITNS----QKLKVIS 232 Query: 247 SEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDIN 306 ++ P + KL F+ ++V +IQ +++R EL SGG ++ID+TEA+T +D+N Sbjct: 233 KDFKPNIPVKLI----ESDPFEEYNVYKQIQNSMKRIHELPSGGEIVIDKTEALTIIDVN 288 Query: 307 TGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQ 366 +G + + ++ NIEA + I R +RLRN+GGIIIIDFIDM NE++R +L++++ Sbjct: 289 SGHYTSSESHEELSKKINIEAAKEICRLIRLRNIGGIIIIDFIDMKNEENRLEILNAIKS 348 Query: 367 ALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMR 426 KD+ K V GF+ LGL+EM RKRT +S++ + CP C+G G V + + V +++ Sbjct: 349 ETLKDKNKIEVYGFTQLGLLEMARKRTSKSLDEKMTALCPVCNGTGHVMSPKFVIERLLK 408 Query: 427 EIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 E+ ++ ++ P++ E + + + + + + E +++ Sbjct: 409 EVKNKPK--NAKEVIIKFHPSLKEFINKDL------LRKTFKVPIHIHF-THLDPESYEI 459 >UniRef50_D0MD03 Ribonuclease, Rne/Rng family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD03_RHOM4 Length = 604 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 116/400 (29%), Positives = 204/400 (51%), Gaps = 9/400 (2%) Query: 94 SELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERER 153 L+++ Q L+V+++K+P+ +KG+R++TDI+L R+LV +P A++V VS++I S ER R Sbjct: 178 ETLLKRDQPLLVKIIKEPISSKGSRVSTDISLAGRFLVLVPFANYVAVSKKITSYKERRR 237 Query: 154 LKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMER-KKRPQTRYQLYGE 212 L+ + E G I+RT AEG L +D L W ++ ++ + P+ L+ + Sbjct: 238 LRALARSLLPEGFGVIVRTVAEGQTAKALDTDLRLLLEKWERIEKKLAEHPKPPVLLHED 297 Query: 213 LALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDV 272 + + V+RD + RI VD+ + + + P ++ Y G++ IF + Sbjct: 298 VNMVSSVIRDLFSEDCTRILVDNPRLHRNIRSYVQAVAPHKVEVVQLYRGKEHIFKATGI 357 Query: 273 ENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIA 332 ++ +A E +V+L SGGYL I+ TEAM +D+N+G + ++ N+EA + IA Sbjct: 358 AEQVAQAFESRVDLPSGGYLYIEHTEAMHVIDVNSGRAGRGLSQEENSLRVNLEAARVIA 417 Query: 333 RQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR 392 +Q+R+R+LGGII+IDFID+ +E ++++V L++ KDR T + S GLV++TR+R Sbjct: 418 QQVRVRDLGGIIVIDFIDLKDEKNKKKVYDELKKEFRKDRAVTKILPMSDFGLVQITRQR 477 Query: 393 TRESIEHVLCNECPTCHGRGTVK-------TVETVCYEIMREIVRVHHAYDSDRFLVYAS 445 R S+ R + T E + + R + HA + Sbjct: 478 LRPSLTTTFDKMAERLA-REKILPPAPSQPTPEALLEAMERWLQAYRHAGGRRNVTLRVH 536 Query: 446 PAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFD 485 P A L + +V+++ +P F Sbjct: 537 PFTAAYLTRRVPTYPTRWLLKHLVRVRLESDPNQPPLSFR 576 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 36/79 (45%), Positives = 48/79 (60%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E+++N +TR+A ++ G L E +IE +GNIY RV RV+P +QAAFVDI Sbjct: 1 MAKEIIINAEKDQTRIAIVEDGTLAEFYIEDPEHERTIGNIYLARVCRVMPSIQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTEC 79 G + AFLH SDI P Sbjct: 61 GQQQDAFLHFSDIAPSLPL 79 >UniRef50_Q9M498 Endoribonuclease E (Fragment) n=6 Tax=Magnoliophyta RepID=Q9M498_ARATH Length = 575 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 122/375 (32%), Positives = 204/375 (54%), Gaps = 13/375 (3%) Query: 69 HASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSR 128 H++D + VA + + + VR+G ++VQVVK+ LGTKG LT L SR Sbjct: 179 HSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSR 238 Query: 129 YLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAY 188 + V + +GVS++I S ER RLK + + G +RT A G EL D Sbjct: 239 FWVLLTRCKRIGVSKKI-SGVERTRLKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDLDG 297 Query: 189 LKRVWTKVMERKKRPQT----------RYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 L W + + K L+ + V++D+ + +++++ VDS T Sbjct: 298 LLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSPRT 357 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 Y + + + P++ +++E + P+FDL+++E EI+ L ++V L +GG L+I+QTE Sbjct: 358 YHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTE 417 Query: 299 AMTTVDINTGA--FVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 A+ ++D+N G F + + I N+ A + IAR++RLR++GGII++DFIDM +E + Sbjct: 418 ALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADESN 477 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 +R V +++A+ +DR V+ S GL+E+TRKR R S+ ++ C CH G V+ Sbjct: 478 KRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRVEA 537 Query: 417 VETVCYEIMREIVRV 431 +ET +I +EI R Sbjct: 538 LETTFSKIEQEICRQ 552 Score = 70.6 bits (172), Expect = 1e-10, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 1/101 (0%) Query: 2 TAELLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 +L+N + R+A ++GG L E+ +E ++Y G +++ +P M AFV+I Sbjct: 1 ATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQ 101 G + +F+ + + D S ++ Sbjct: 61 GSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMND 101 >UniRef50_C3WHH5 Ribonuclease G n=4 Tax=Fusobacterium RepID=C3WHH5_9FUSO Length = 459 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 135/437 (30%), Positives = 231/437 (52%), Gaps = 24/437 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ L+++ ET++A ++ L+EI+IERE + I GNIYKG++ +L + FVDI Sbjct: 1 MSKCLILSKNTYETKLALLEDDKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL+K AFL E +K +I L+VQV + KGARLT Sbjct: 61 GLEKNAFLSF------------ENKKNIPKFNIF------DSLIVQVETEARDGKGARLT 102 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 D ++ LV +P + ++ +S++IE+ ++LK + + + G I+RT + Sbjct: 103 LDYSINGENLVLLPNSKNLSISKKIENLETIKKLKDI---FLNIDKGLILRTKSVEKSPE 159 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L + L+ + ++ + K T LY ++ ++ L D ++D +D ++ Sbjct: 160 ALLEEYKKLEAINNQIQKDFKEKNT-TLLYDNNSILKKAL-TLLDEDIDEFIIDDEDSFN 217 Query: 241 ALLEFTSEYIPEMTSKLEHYTG-RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + E K + IF + ++ +I+RAL+RKV L+SG ++I++TEA Sbjct: 218 KIKNTLEENKRNYLLKKFKKYFKDEDIFSYYKLDTQIERALDRKVYLESGASIVIEKTEA 277 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++D+NTG G+++ + IFNTN+EA + IARQ++LRNL GIIIIDFID+ R++ Sbjct: 278 LVSIDVNTGQNTGNQSSQNLIFNTNLEACKEIARQIKLRNLAGIIIIDFIDLKKISDRKK 337 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 +L L++ L KDR++ + FS LGLV+ TRKR + + +C C G + + + Sbjct: 338 ILEELKRYLKKDRMEINSLDFSHLGLVQFTRKRQGKELSFYYREKCHYCEGTSYLLSKDR 397 Query: 420 VCYEIMREIVRVHHAYD 436 + + E+ D Sbjct: 398 IILNLFAELNSQIKYND 414 >UniRef50_Q6B930 Ribonuclease E n=1 Tax=Gracilaria tenuistipitata var. liui RepID=Q6B930_GRATL Length = 497 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 124/408 (30%), Positives = 216/408 (52%), Gaps = 16/408 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +++++ A I+ +QE I V +IY G V ++ + AAF+ + Sbjct: 1 MVKKIVIS--HYNNLAAIINNNKIQE--IITINNPYQVNDIYIGTVEKIFTSINAAFIKL 56 Query: 61 G-LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 K+ F+H +DI +K V+ I +++ Q ++VQV K+P KG RL Sbjct: 57 NKSGKSGFIHINDI--------KHLKKGKHVKSIEKVLSINQIILVQVTKEPTIYKGPRL 108 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T +I L +YLV MP S + +S +I +ER L + + G +I+++A+GV E Sbjct: 109 TANIHLHGKYLVLMPFCSTICISHKIYDHNERTYLYSLGVLLKPGKMGLLIKSSAQGVKE 168 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + D LK+ W + + + LY + L +R++RDF + + +I +DS+ Sbjct: 169 KIILKDLDDLKKQWGFIEKAIIEYSSPLLLYKDEDLIKRIIRDFYEDSVTKIIIDSKEGL 228 Query: 240 EALLEFTSEY---IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 L + ++ + + L+ Y ++ I D F +++ I AL+ KV+L GG++II+ Sbjct: 229 NQLNYYLYKWNCISNRIKTILQLYNHQKCILDEFYIKHAINNALKPKVKLPYGGHIIIES 288 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 EA+T +D+N+G+F N + I TN A IA QL++RN+ G+IIIDFIDM+++ Sbjct: 289 NEALTVIDVNSGSFNKSGNSKEAILKTNFYAAIEIAHQLKIRNINGVIIIDFIDMSSQGD 348 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNE 404 + ++L + L D K + S LGLVE+TR+R +S++ + +E Sbjct: 349 QLQLLEHFSKLLKLDSAKPQIVQLSELGLVELTRRRRGQSLQELFIHE 396 >UniRef50_A0Q1T9 Ribonuclease G n=4 Tax=Clostridium RepID=A0Q1T9_CLONN Length = 481 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 132/486 (27%), Positives = 244/486 (50%), Gaps = 25/486 (5%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 + + R+ + IL+E IE E G IYKG V ++P ++ AF+DIG DK Sbjct: 4 IYIEREEGILRIVLREDDILKECFIEEEKLEPSPGEIYKGVVKNIVPAIKCAFIDIGYDK 63 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 A+++ + ++ V+ G +++V+++K+ LG KG ++T+ I+ Sbjct: 64 NAYMYL------------------NHKFKNDDVKNGDEVLVEIMKESLGEKGPKVTSSIS 105 Query: 125 LPSRYLVFMPGASHVGVSQRIESESE-RERLKKVVAEYCDEQGGFIIRTAAEGVGEAELA 183 +P RY+V + +G S++IE + + + + G +IRT A ++ Sbjct: 106 VPGRYVVIVTHNKKIGFSKKIEDNDNFKSYI--IDNINKPDDIGIMIRTNALDATIEDIN 163 Query: 184 SDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL 243 + L + K+++ LY R+L D ++ V++ E + Sbjct: 164 KELEKLYDNYKKIVQEGTYSLKPKLLYNGGGTLGRILNDILTFNTKKVIVNNEDDAEYIK 223 Query: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 EF + ++ ++E Y+G+Q +F +++E EI K+ L SGG ++ID+TEAM + Sbjct: 224 EFVEDKS-DLELEIEVYSGKQSLFSHYNIEKEILSLRNNKIVLPSGGNIVIDRTEAMYVI 282 Query: 304 DINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 D+N+G ++D T TN+EA Q IARQ+ +RNL GIIIIDFID++N +++++++H Sbjct: 283 DVNSGKNTKQTSIDKTALVTNLEAAQEIARQIMMRNLSGIIIIDFIDIHNYEYKKKIMHI 342 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYE 423 L++ +D+ KT + F+ L LV++ RKR ++I + +C CHG+ +E + Sbjct: 343 LKEEFKEDKKKTVIYPFTQLNLVQIARKRRGKAISEYIEEDCSMCHGKSKRIKLEYLNKL 402 Query: 424 IMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 I EI ++ Y+ + + + G+ + E+E G + + + N E Sbjct: 403 IKDEITKIDEGYNIKDIYIEIDEIYKKDILGDIIKFIEEIE---GMHKSIYVNFISNLEY 459 Query: 484 FDVVMM 489 F V + Sbjct: 460 FKVEPL 465 >UniRef50_A7B8M6 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7B8M6_RUMGN Length = 413 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 114/404 (28%), Positives = 198/404 (49%), Gaps = 18/404 (4%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIE----REARRGIVGNIYKGRVSRVLPGMQAAFV 58 ++L+ + ++ ++ EIH + R+ ++G+IY G+V + + AAF+ Sbjct: 4 RKILMLKKEGKIWTFLLENDVIAEIHCSLPDSDQHRQPVLGDIYIGKVKNIAANIGAAFI 63 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 +I K + S Q FT + + + G +L+VQ+ ++ + TK Sbjct: 64 EIAPGKECYYDLSQA----------PQAIFTHKIGKKPLCIGDELVVQISREAVKTKAPT 113 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 ++++I RY V G + +G S ++ S R+ K+ ++ +E G IIRT A+ V Sbjct: 114 VSSNINFTGRYAVLTTGNTRIGTSGKL-PRSLRDTYKEKLSHLKNEDYGLIIRTNAKDVP 172 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + + L+ K+ E L L++ L I D Sbjct: 173 FETVLEEIQKLENACVKLKETAPFRTCFSCLQEAPPSYITDLKNVYADGLSAIITDDPKL 232 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 Y+ + F PE SKL+ Y + P+ L+ + ++RAL+ V LK+G YL+I T Sbjct: 233 YQQIHGFLQAEQPEDLSKLQFYEEQLLPLSKLYSTDIAVERALKEYVWLKNGAYLVIQPT 292 Query: 298 EAMTTVDINTGAFVGH--RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 EA+T VD+N+G + + +T N+EA + ARQ+RLRN+ GII+IDFI+M++ D Sbjct: 293 EALTVVDVNSGKYSAKTKKKSAETYLKINLEAAKETARQIRLRNISGIILIDFINMDDPD 352 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEH 399 + +L + L +D ++TSV +AL LVE+TRK+ R + Sbjct: 353 MMQELLKQFRRFLGEDPIQTSVVDVTALQLVEVTRKKVRRPLHE 396 >UniRef50_B6INE9 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenum SW RepID=B6INE9_RHOCS Length = 392 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 133/401 (33%), Positives = 207/401 (51%), Gaps = 13/401 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ L ++ + +R A + G L ++H++R R +G++ GRV RV+ G+ AAFV+I Sbjct: 1 MSRALHIDRSGPLSRAALLRDGELSDLHLDRLDRPAWLGSLRLGRVVRVVAGLDAAFVEI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G L+A+D+ P + I +L+R GQ ++VQV D G KGA LT Sbjct: 61 GDRLPGLLNAADVRPL------PSGRDRREARIGQLLRTGQAVLVQVKADAHGDKGAVLT 114 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 D+TLP R+LV P S + +S+R+ ER R++ + + +GG+I+R A Sbjct: 115 MDVTLPGRFLVHAPLGSGLHLSRRLGRGPERARVQATLRDLLPAEGGWIVRADAASADPG 174 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 LA +A L W + L R L +F A D IRV+ Sbjct: 175 LLALEAESLWADWRQAARAADGAGAPALLLPAPTAPVRALLEFGGAGFDAIRVEGAEALA 234 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + + P++ + + R +F+ D+ I ER+V L GG L+I++TEA+ Sbjct: 235 EVRRWCRDRAPDLEPLVRPHVARLSLFEEGDLAGAIAALAERRVPLAQGGSLVIERTEAL 294 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+N G +TN+EA + IARQLRLRN+GGI+++DF++M R + Sbjct: 295 TVIDVNGGERGN-------PLSTNLEAAREIARQLRLRNVGGIVVVDFVNMAAAADREHL 347 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 L +L QA+S+D T V G S LGL+EMTR R + +L Sbjct: 348 LLTLTQAVSEDPAGTHVYGLSKLGLMEMTRSRRGPPVADLL 388 >UniRef50_O67311 Cytoplasmic axial filament protein n=1 Tax=Aquifex aeolicus RepID=O67311_AQUAE Length = 458 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 116/457 (25%), Positives = 227/457 (49%), Gaps = 33/457 (7%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E+ ++ + G L++ +ER + G KG V + P + F+D+GL Sbjct: 6 EIFISASSFFAFTLVFLGTELKDFKVERRKEKYRTGAFLKGLVKKECPALDGFFLDVGLT 65 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 K A L + + +R G ++VQ+ + KGA++T + Sbjct: 66 KEALLQ--------------------EKKNCKNLRIGDSVIVQLKRKERDLKGAKVTCKV 105 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELA 183 ++P +Y+V+ P + S++++ + E LKK++ E +++ G IIR +A + ++ Sbjct: 106 SIPGKYIVYFPETKKLNFSKKLKGFAFTEDLKKILKEELNDREGVIIRASAISATKEQIL 165 Query: 184 SDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL 243 + L+ W + E+ K+ G+ + +L D+ + I VD+ + ++ Sbjct: 166 KELQELRNKWESLKEKAKKVNKGILEEGQPQFIKTIL-DYWGF-IKNIYVDNGDVWGEIV 223 Query: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 EF + + KL + + + I + + V LK+GG+++I+QTEA+T++ Sbjct: 224 EF---FGDSIKHKLRYVNTIDTLPGGITLNQLIDKLTSKTVWLKNGGFIVIEQTEALTSI 280 Query: 304 DINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 D+N+G G +L++T +N N+EA + +A+Q++ RNL GIII+D IDM E + +L Sbjct: 281 DVNSGETCGK-SLEETAYNVNLEALKEVAKQIKFRNLSGIIIVDLIDMKKEKTKESLLSE 339 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYE 423 +++ + ++ + G + LGL+EMT+K ESI V+ CP C G+G VK+ E + + Sbjct: 340 VKKIFEGEGLRIKIYGITKLGLLEMTKKWESESIYEVIGETCPHCQGKGFVKSKEFILHT 399 Query: 424 IMREIVRVHHAYDSDRFLVYASPAVA---EALKGEES 457 + + + + + ++ P+VA E E++ Sbjct: 400 LEKALEKT----RGKKIVLKVHPSVAKTVEEFINEKN 432 >UniRef50_B7ANV1 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7ANV1_9BACE Length = 418 Score = 366 bits (939), Expect = 1e-99, Method: Composition-based stats. Identities = 122/426 (28%), Positives = 202/426 (47%), Gaps = 37/426 (8%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 LL+ +T A D ++ + + I+GNIY GRV V+ + AAF++ Sbjct: 2 QRLLITKFNGQTLCAVCDQMTIRTVRV--IEDESILGNIYVGRVENVVNNINAAFIEYAR 59 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K + +D E F ++ + G ++VQV ++ + TK LT Sbjct: 60 GKKGYYSLTD----------NEHHIFLNPKNNDRMCIGDLVLVQVSREGVKTKEPTLTGR 109 Query: 123 ITLPSRYLVFMPG----ASHVGVSQRIESESERERLKKVVAEYCDE-------------- 164 I + RY S V +S++I E R LK +V + + Sbjct: 110 IGITGRYCALTLDCKSENSSVFISKKITDEDRRSYLKGIVKDAMNNALNAYTASSVNSIP 169 Query: 165 -----QGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRV 219 I+RT AE E + ++ + + +++ + ++Y Sbjct: 170 TASDMHFNIIVRTNAEDAPEEPVTAEVSRIVTTMCDILKDAVTRKGLTRMYSPEESCLED 229 Query: 220 LRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQR 278 +++ L++I D Y+++ + E P +KLE Y Q P+ L+ VE++I Sbjct: 230 VQNMRATNLEKIITDIPEVYDSVRRYLGENEPGEAAKLEFYDDMQLPLNKLYSVESQIST 289 Query: 279 ALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDD-TIFNTNIEATQAIARQLRL 337 AL ++V L SGGYL+I+ TEA+T +D+N+G F G+R L D T N+EA I RQL L Sbjct: 290 ALNKRVWLPSGGYLVIEPTEALTVIDVNSGKFTGNRKLKDNTYLKINMEAAVEIGRQLML 349 Query: 338 RNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESI 397 RNL GII++DFI++N + ++ ++ L L D V TSV + LGLVE+TRK+ R+ + Sbjct: 350 RNLSGIIVVDFINLNTFEEKKELMSYLADILKADTVPTSVVDMTRLGLVEITRKKIRKPL 409 Query: 398 EHVLCN 403 V+ + Sbjct: 410 HEVIAS 415 >UniRef50_C7G7S7 Ribonuclease, Rne/Rng family n=2 Tax=Roseburia RepID=C7G7S7_9FIRM Length = 418 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 121/428 (28%), Positives = 202/428 (47%), Gaps = 36/428 (8%) Query: 1 MTAELLVNVTPS--ETRVAYIDG--GILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAA 56 M ++ E R+A + L E+ E ++GNIY GRV V+ + AA Sbjct: 1 MNRFIITTTEIEKKEYRIAALCDARQKLIEVTTESMTGTSVLGNIYIGRVENVVKNLNAA 60 Query: 57 FVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKG 116 FV I + +L ++ E+K + G +L+VQVVK+ L TK Sbjct: 61 FVCIAPGQNCYLPLQELKNPIFTKKQSEKK---------AICAGDELLVQVVKEALKTKD 111 Query: 117 ARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC----DEQGGFIIRT 172 ++T++T +Y++ G +G S ++ + +RE+L K+V ++ G ++RT Sbjct: 112 PSVSTNLTFTGKYVILTTGKRKIGASSKL-PKEKREKLLKIVEDFLSGKEQIPYGVVVRT 170 Query: 173 AAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIR 232 A + EL + A L+ K++ K ++ E Q++L + EL + Sbjct: 171 NAAQASKEELLLELAQLEAEVQKIISGAKYLIRYSLVHKEEQPWQKMLNGLYETELGEVV 230 Query: 233 VDSRLTYEALLEF-----------------TSEYIPEMTSKLEHYTGRQ-PIFDLFDVEN 274 D R +E + E + K+ +Y + L + + Sbjct: 231 TDDREIFETICNMYGVGAKQLVTGGSVRSRVDEILTGHGLKIRYYEDEMVSLSALSGITS 290 Query: 275 EIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ 334 ++ AL +V LKSG YLII TEA+T +D+NTG + + + + NIEA + IARQ Sbjct: 291 QLHDALRERVWLKSGAYLIIQPTEALTVIDVNTGKNIAKKEMQENFLKVNIEAAEEIARQ 350 Query: 335 LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTR 394 LRLRN+ GI+I+DFI++ + +L+ AL KD V T + + LGLVE+TRK+ + Sbjct: 351 LRLRNISGIVIVDFINLEAKSAESELLNVFGAALKKDPVPTQIVEMTKLGLVEVTRKKIK 410 Query: 395 ESIEHVLC 402 +S+ L Sbjct: 411 KSLRESLS 418 >UniRef50_C9L8D6 Ribonucleases G and E n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L8D6_RUMHA Length = 400 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 101/388 (26%), Positives = 203/388 (52%), Gaps = 13/388 (3%) Query: 17 AYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPH 76 A G + +++ I+GNIY G+V + +QAAF++I + ++ Sbjct: 23 ALEKEGRICQLNPMSLNSDSILGNIYIGKVKNIQKNIQAAFIEIENGIMCYYSMAEKASP 82 Query: 77 TECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGA 136 F + +++ G +++VQV K+ + +K +++++ RYLV Sbjct: 83 C----------FVNVKKNNVLKIGDEMIVQVSKEGIKSKLPYVSSNLNFTGRYLVLTSER 132 Query: 137 SHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKV 196 +G S +++ E E++++++++ + E G I+RT E E+ + L + + V Sbjct: 133 KELGFSGKLKKE-EKKQIREILKDKIPENVGIIVRTNCRDAQEEEILHELEELMKRYEAV 191 Query: 197 MERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSK 256 +++ K L + ++L++ +L+ I D + YE +++ Y + Sbjct: 192 LQKGKSRVCFSVLEKSMPEYVQILQNLYSQDLEEIVTDKQELYECAVQYLKGY-KQQEKI 250 Query: 257 LEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 + +Y + P++ L++++ ++A +V LKSGG+L+I QTEA +D+NTG ++ Sbjct: 251 VRYYEDKLLPLYKLYNLQKAFEQAQNERVWLKSGGFLVIQQTEAFVCIDVNTGKCTSKKD 310 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 + +T N+EA + IA QLRLRNL GII+IDFI++ + + ++ +L++ L +D +K Sbjct: 311 MQETFRKINLEAAKEIAWQLRLRNLSGIILIDFINLERAEDKEELMQTLQKYLWQDSIKG 370 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCN 403 +V + L +VE+TRK+ R+S+ L Sbjct: 371 TVVDMTELNIVEVTRKKVRKSLAEELKE 398 >UniRef50_A7VBE5 Putative uncharacterized protein n=3 Tax=cellular organisms RepID=A7VBE5_9CLOT Length = 388 Score = 357 bits (917), Expect = 5e-97, Method: Composition-based stats. Identities = 113/406 (27%), Positives = 197/406 (48%), Gaps = 24/406 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +L++ A G L ++ + R+ I+ NIY G+V ++ + AAFVDIG Sbjct: 2 NKLVITNYEDHILEAVYSDGKLSDLML--FDRQSILSNIYVGKVENIVANIDAAFVDIGT 59 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + SD + F + +++ G +++VQV KD + TK T++ Sbjct: 60 GLPCYYSISD-----------NKHIFLNAKKNSVLKAGDEILVQVSKDAIKTKNPVATSE 108 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I L + L + + +G+S +I + R+ L ++ + G I+RT + + + + Sbjct: 109 IELKTENL-LVNTSGRIGISGKIRKKETRDHLHQLAKRVLPDGFGCILRTVCQELPDETI 167 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFA----DAELDRIRVDSRLT 238 SD + L + ++++ K LY A D+ +A L I D +L Sbjct: 168 LSDLSELSKQLKQIIQTAKTRTCYSCLYKNDAEYL----DYFILKHNAGLQEIVTDQKLV 223 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 ++ + SE KL Y + + L+++ +++ + +V +KSG YL+I+QT Sbjct: 224 FDEFAMYLSEKQITDV-KLTMYNDKNCNLLTLYNLPRDLENLKKERVWMKSGAYLVIEQT 282 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EAM +D+NTG V + ++ + N EA + RQLRLRNL GII++DFI+M Sbjct: 283 EAMVVIDVNTGKSVDKHSFEEHLLRINSEAAVEVCRQLRLRNLSGIIVVDFINMKQPGSM 342 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 + LEQ L+KD V + + L LVE+TRK+ R+S++ L Sbjct: 343 DVIKDILEQELAKDSVPAAFVDVTKLSLVELTRKKIRKSLKEQLTK 388 >UniRef50_A6MVU3 Ribonuclease E n=1 Tax=Rhodomonas salina RepID=A6MVU3_RHDSA Length = 429 Score = 356 bits (913), Expect = 2e-96, Method: Composition-based stats. Identities = 117/425 (27%), Positives = 203/425 (47%), Gaps = 14/425 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M L++ ++ Y + ++ ++ IER +G+IY G V VLP + AAF+ + Sbjct: 1 MVKTLVL-AEQNKIGSVYDNDTVITQLIIERGTYH--IGDIYIGIVETVLPSINAAFIIL 57 Query: 61 GL-DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 + F+H +++ G +K+ +I+ + +MVQV+K+P G KG + Sbjct: 58 DYSENNGFIHINNL--------GHLKKKTNSTNITNHLSCNSIVMVQVLKEPNGQKGPTV 109 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T DITL RYL +P + S+ ES L+ + + G +I A Sbjct: 110 TGDITLRGRYLTLLPFEEDIFFSRDFESNENIVYLRLLFTLLKPKSTGILINKKAIHASI 169 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + D L W + + + +VL+ ++D I VDS+ Sbjct: 170 NNIIQDFYSLLYEWDSICHNLNYQSAPFLISRNKNFISKVLQKVYSEKVDTILVDSKQGS 229 Query: 240 EALLEFTSEYIPEMTSKLEH-YTGRQPIFDL-FDVENEIQRALERKVELKSGGYLIIDQT 297 + + + +I + + L Y F ++++ + L+ ++ L GGY+II++T Sbjct: 230 KKIASTVTRWIKQKNNTLSIKYFENHNFFVRDYNLDLIVYDLLQSRINLLGGGYIIIEKT 289 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+TT+D+N+G+F N +TI N +A + IAR LRLRN+ G+II+DFIDM N+ + Sbjct: 290 EALTTIDVNSGSFNYLNNPRETILLVNRKAAKQIARHLRLRNISGVIIVDFIDMKNQQDQ 349 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 +L + L +D + + FS LGLVE+TRKR S+ + N R + ++ Sbjct: 350 LALLLHFDSFLKQDEQRPRIIQFSELGLVELTRKRQGRSLLEMFSNSNGDLSNRSCISSI 409 Query: 418 ETVCY 422 + Y Sbjct: 410 VSQSY 414 >UniRef50_A4TUF8 Ribonucleases G and E n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TUF8_9PROT Length = 435 Score = 349 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 127/486 (26%), Positives = 220/486 (45%), Gaps = 54/486 (11%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +E+L + P E+R+A + G L ++ + R + + G + GRV + P M A FVDI Sbjct: 1 MASEILYSWGPGESRLALVRDGRLVDLAVIRPS--LLAGAVVLGRVVELAPKMGAIFVDI 58 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK FL + QG ++VQV D G KGA LT Sbjct: 59 GQDKPGFLQGVK------------------------LNQGASVLVQVKADAQGLKGAVLT 94 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T++ L R++ + P + V +++ + R L++ +A + G + R A E Sbjct: 95 TEVVLSGRFIAYTPMRPGLSVPRKLSDD-RRAILQERLACMMHDDEGIVARLHAVNADEP 153 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L +D L+ W ++ + ++ + L+ R+L D + R+ VD L + Sbjct: 154 ALEADLTALRGQWQQMQQGQREARAPAVLWR-PDPLDRMLSDH--PGVSRVLVDDDLAFA 210 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +E + G P+FDL+D E+ + L V L GG + T A+ Sbjct: 211 QAQA-------RFGGLVERHRGG-PVFDLYDTEDAVAACLAPVVPLPCGGRVTFQGTAAL 262 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+++G N +A IARQLRLRN+ G II+DF+ + ++ Sbjct: 263 TAIDVDSGPAQ--------PIEANQQAVSVIARQLRLRNIAGQIIVDFVSAGGKGALIKL 314 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 + +L+Q++S D T V G +ALGLVEMTR+R S+ ++ + + + Sbjct: 315 IAALKQSISSDPTATHVIGATALGLVEMTRERRGPSLSDLMVENVA-------LLSPQAA 367 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 +R ++ + + +P VA L G ++ +LAE+E +G++ ++ E Sbjct: 368 ALRALRLVLAEAAHHPGRALTLTVAPDVAAILHG-QTGALAEIEARLGRKPMIRAEEGRA 426 Query: 481 QEQFDV 486 ++ V Sbjct: 427 RDDIAV 432 >UniRef50_D2MIS5 Ribonuclease, Rne/Rng family (Fragment) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MIS5_9BACT Length = 327 Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 122/315 (38%), Positives = 193/315 (61%) Query: 175 EGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVD 234 +GV E +L SD +L +W +++++ L+ +L L RV+RD + R+ +D Sbjct: 8 QGVSEEDLKSDVGFLTAMWQDIVKKQDIYPAPAALHTDLDLTLRVVRDLFTKNVKRLLID 67 Query: 235 SRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLII 294 S+ A+ EF Y+P+ TS++ HY + +FD +E EI RAL RKV LKSGG+++I Sbjct: 68 SKEECAAVKEFVRRYLPDQTSRIVHYDKDESLFDHLGIEMEISRALSRKVWLKSGGHIVI 127 Query: 295 DQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 D TEAMT VD+NTG +VG R+ ++TI N+EA + IA Q++LR +GGIIIIDFIDM Sbjct: 128 DHTEAMTVVDVNTGRYVGKRDQEETILRNNLEAAREIAYQIKLRGIGGIIIIDFIDMERG 187 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 +R +V +L A+ D+ +T ++ S LGL+E++R+R RE + L + C C GRG Sbjct: 188 RNRDKVYQALVDAMGNDKARTRISRISDLGLIEISRERVREDLLRTLSDVCSDCDGRGYT 247 Query: 415 KTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ 474 ++ TV Y+++R+I R+ A +V A P + E L+ E +L +++ Q+ V Sbjct: 248 RSALTVVYDMLRDIRRIGRAAGQQTVVVGAHPHIVEMLQETEPEALEQLQREFHYQIIVN 307 Query: 475 IEPLYNQEQFDVVMM 489 +PL EQ+D+V++ Sbjct: 308 ADPLLPLEQYDLVVL 322 >UniRef50_A0AIZ2 Complete genome n=21 Tax=Listeria RepID=A0AIZ2_LISW6 Length = 453 Score = 343 bits (881), Expect = 9e-93, Method: Composition-based stats. Identities = 109/452 (24%), Positives = 201/452 (44%), Gaps = 30/452 (6%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +L++N E RVA ++ L ++ I R + + VG+I+ G + ++ M AAFVD+G Sbjct: 2 KKLIINAAHIEKRVAVLEDDTLIDMEIIRPSEKVQVGDIFYGFIQKIDRKMDAAFVDLGN 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 F+H DI E QG + VQ+V++ TK L+ Sbjct: 62 QNKGFIHLKDIPEIFEK------------------NQGAKIPVQIVREGSATKLPLLSAV 103 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 + P L+++ G +V +S+RI + LKK++ DE IIR+ AE +L Sbjct: 104 LEFPGDLLIYLHGKEYVSISKRIADKEP---LKKIMELLLDENEAVIIRSNAENSSNEQL 160 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFA-DAELDRIRVDSRLTYEA 241 + + +++ + L + + F I D + Sbjct: 161 EIALNQAREKYQLLIKDAATRKKPGLLLSAASGVFTSAKQFIQRYSPTEIMTDDFEFAKT 220 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + P L+ +F ++++I+R V L +G L I++TEAM Sbjct: 221 ----LEVHFPNREIVLK---KSSDLFADIGIKSQIERLSRPVVHLPNGSSLFIEKTEAMW 273 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+N+ F G + T+ + NI+A I R +RLRN+ G+II+DFI +E + Sbjct: 274 VIDVNSSRFKGTAAKEKTVESVNIKAVPEIFRHIRLRNMSGMIIVDFIGGMSEAGHEELY 333 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 ++E+ ++ T + S GL+++TR++ ++S CP C+G G V + +T+ Sbjct: 334 EAIERQSREEYTTTQIAALSQSGLLQLTRRKKQQSFLEFTTIPCPVCYGTGHVASKDTLA 393 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALK 453 +++ RE+ + + + + V +A Sbjct: 394 FQLERELAGIMQGEPNS-IQIITTEDVLDAFL 424 >UniRef50_C0BCI6 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BCI6_9FIRM Length = 396 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 113/409 (27%), Positives = 197/409 (48%), Gaps = 21/409 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRG--IVGNIYKGRVSRVLPGMQAAFV 58 M ++L+ + +A ++ + E H + +G IY GRV ++LP + AFV Sbjct: 1 MERKVLLTECMNRRVLALLEDEKVTEFHFGSSGEKKSCRLGEIYVGRVRKILPNIGGAFV 60 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 +I + + + FT + + + G +L+VQV K+ + TK Sbjct: 61 EIANGEQCYFALDEKYTPV----------FTNKIGKKPLVIGDELLVQVEKEAVKTKQPV 110 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 +T ++ +Y+V G +GVS +I + +E L+K+ +Y D G I RT Sbjct: 111 VTGNLNFTGQYVVLTSGNRTIGVSGKIHG-ARKEELQKLGQDYIDCDFGLIFRTNCVEAE 169 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIR----VD 234 E ++ ++ L + +++E K L + LRD +L I V+ Sbjct: 170 ETQIRAEIDKLTENYHRIVEYGKMRTCFSCLQSAPDPCVQALRDIYKKDLTEIIVEETVE 229 Query: 235 SRLTYEALLEFTSEYIPEMTSKLEHYTG-RQPIFDLFDVENEIQRALERKVELKSGGYLI 293 Y+ + + +P+ L YT P+ +++E I+ A + +V +KSG YL+ Sbjct: 230 DGALYKEVQTYLETEMPDELPLLRAYTDASYPLVKCYNLEGAIREARQERVWMKSGAYLV 289 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 I TEA+T +D+N+G + + N EA + RQ+RLRN+ GIIIIDFI+M + Sbjct: 290 IQPTEALTVIDVNSGKCLKKNS---HFPEINREAAREAVRQIRLRNISGIIIIDFINMKS 346 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLC 402 + ++ +L L+ L KD +V G + L LVE+TRK+ R+++E L Sbjct: 347 AEEKKELLAYLQLELKKDPNPGNVIGMTKLQLVEITRKKIRKTLEESLH 395 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q1QX63 Ribonuclease E n=5 Tax=Gammaproteobacteria RepID... 603 e-171 UniRef50_Q0VQP0 Phosphoric diester hydrolase n=5 Tax=Gammaproteo... 599 e-170 UniRef50_Q2P196 Ribonuclease E n=28 Tax=Proteobacteria RepID=Q2P... 597 e-169 UniRef50_Q0A8Q8 Ribonuclease E n=8 Tax=Gammaproteobacteria RepID... 590 e-167 UniRef50_C5BU48 Ribonuclease E n=1 Tax=Teredinibacter turnerae T... 582 e-164 UniRef50_C8PW15 Ribonuclease E n=1 Tax=Enhydrobacter aerosaccus ... 581 e-164 UniRef50_A3JIF1 Ribonucleases G and E n=2 Tax=Gammaproteobacteri... 580 e-164 UniRef50_C7RBE6 Ribonuclease, Rne/Rng family n=1 Tax=Kangiella k... 579 e-164 UniRef50_A6VXP7 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteo... 577 e-163 UniRef50_Q1YTQ8 Ribonuclease E n=1 Tax=gamma proteobacterium HTC... 576 e-163 UniRef50_B0BR35 Ribonuclease E n=14 Tax=Pasteurellaceae RepID=B0... 576 e-163 UniRef50_Q2SK60 Ribonucleases G and E n=3 Tax=Gammaproteobacteri... 575 e-162 UniRef50_C4X6M8 RNase E n=25 Tax=Gammaproteobacteria RepID=C4X6M... 574 e-162 UniRef50_A8FWL8 Ribonuclease, Rne/Rng family n=38 Tax=Gammaprote... 571 e-161 UniRef50_B5EL09 Ribonuclease, Rne/Rng family n=2 Tax=Acidithioba... 571 e-161 UniRef50_P21513 Ribonuclease E n=119 Tax=Gammaproteobacteria Rep... 570 e-161 UniRef50_P0A9J2 Ribonuclease G n=523 Tax=cellular organisms RepI... 569 e-160 UniRef50_Q7MM07 Ribonuclease E n=15 Tax=Gammaproteobacteria RepI... 568 e-160 UniRef50_C1DR24 Ribonuclease E n=27 Tax=Gammaproteobacteria RepI... 568 e-160 UniRef50_B5JUW5 Ribonuclease E n=1 Tax=gamma proteobacterium HTC... 566 e-160 UniRef50_P44443 Ribonuclease E n=98 Tax=Gammaproteobacteria RepI... 566 e-160 UniRef50_A9ADG1 Ribonuclease, Rne/Rng family n=89 Tax=Betaproteo... 566 e-160 UniRef50_D0L1K6 Ribonuclease, Rne/Rng family n=1 Tax=Halothiobac... 565 e-159 UniRef50_Q1K0W4 Ribonuclease, Rne/Rng family n=1 Tax=Desulfuromo... 565 e-159 UniRef50_A4A8E4 Ribonuclease E n=5 Tax=unclassified Gammaproteob... 563 e-159 UniRef50_A5WCP3 RNAse E n=3 Tax=Proteobacteria RepID=A5WCP3_PSYWF 563 e-159 UniRef50_Q2YA54 Ribonuclease E n=7 Tax=Betaproteobacteria RepID=... 563 e-159 UniRef50_C5AD76 Ribonuclease E n=21 Tax=Proteobacteria RepID=C5A... 561 e-158 UniRef50_Q0ABM4 Ribonuclease G n=2 Tax=Proteobacteria RepID=Q0AB... 558 e-157 UniRef50_B4RR31 Rne n=31 Tax=Neisseriaceae RepID=B4RR31_NEIG2 557 e-157 UniRef50_C8N8A8 Ribonuclease G and E n=19 Tax=Proteobacteria Rep... 556 e-157 UniRef50_C9R616 Ribonuclease E (RNase E) n=2 Tax=Gammaproteobact... 553 e-156 UniRef50_Q492Q0 Ribonuclease E n=1 Tax=Candidatus Blochmannia pe... 550 e-155 UniRef50_Q0F3G3 Ribonucleases G and E n=1 Tax=Mariprofundus ferr... 549 e-155 UniRef50_Q2RSE6 RNAse E n=1 Tax=Rhodospirillum rubrum ATCC 11170... 549 e-154 UniRef50_C8W5Q7 Ribonuclease, Rne/Rng family n=11 Tax=Bacteria R... 545 e-153 UniRef50_A8L1W0 Ribonuclease, Rne/Rng family n=25 Tax=Actinobact... 545 e-153 UniRef50_C6MTB8 Ribonuclease, Rne/Rng family n=1 Tax=Geobacter s... 545 e-153 UniRef50_Q3A2X7 Ribonuclease E n=3 Tax=Bacteria RepID=Q3A2X7_PELCD 543 e-153 UniRef50_A8PMW2 Ribonuclease E (RNase E) n=1 Tax=Rickettsiella g... 539 e-152 UniRef50_C6E0U6 Ribonuclease, Rne/Rng family n=8 Tax=Desulfuromo... 539 e-151 UniRef50_B0VED2 Ribonuclease E (RNase E): endoribonuclease for r... 538 e-151 UniRef50_B8IYX2 Ribonuclease, Rne/Rng family n=10 Tax=Desulfovib... 538 e-151 UniRef50_C0VHW5 Ribonuclease E (RNase E): endoribonuclease for r... 538 e-151 UniRef50_B3T2A0 Putative S1 RNA-binding domain protein n=2 Tax=p... 537 e-151 UniRef50_Q1PY04 Strongly similar to ribonuclease E (RNase E) n=1... 536 e-151 UniRef50_Q6FEY0 Ribonuclease E (RNase E): endoribonuclease for r... 536 e-151 UniRef50_C8WCX7 Ribonuclease, Rne/Rng family n=3 Tax=Zymomonas m... 535 e-150 UniRef50_A8ZW09 Ribonuclease, Rne/Rng family n=2 Tax=Desulfobact... 535 e-150 UniRef50_B6BTS7 Ribonuclease E n=2 Tax=Betaproteobacteria RepID=... 535 e-150 UniRef50_B4RCR6 Ribonuclease, Rne/Rng family protein n=4 Tax=Alp... 535 e-150 UniRef50_B8GWM7 Ribonuclease E n=6 Tax=Caulobacteraceae RepID=B8... 534 e-150 UniRef50_Q1NUM8 Ribonuclease E and G n=2 Tax=Deltaproteobacteria... 534 e-150 UniRef50_B0SXB4 Ribonuclease, Rne/Rng family n=2 Tax=Alphaproteo... 531 e-149 UniRef50_A1HNZ2 Ribonuclease, Rne/Rng family n=1 Tax=Thermosinus... 530 e-149 UniRef50_C1A932 Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca T... 530 e-149 UniRef50_D0LZK2 Ribonuclease, Rne/Rng family n=1 Tax=Haliangium ... 529 e-149 UniRef50_A0LIP4 RNAse G n=22 Tax=Bacteria RepID=A0LIP4_SYNFM 529 e-149 UniRef50_D2SCS1 Ribonuclease, Rne/Rng family n=39 Tax=Bacteria R... 529 e-149 UniRef50_D1AAW2 Ribonuclease, Rne/Rng family n=1 Tax=Thermomonos... 529 e-148 UniRef50_Q8K9J9 Ribonuclease E n=5 Tax=Buchnera aphidicola RepID... 529 e-148 UniRef50_A0LJB4 RNAse E n=1 Tax=Syntrophobacter fumaroxidans MPO... 528 e-148 UniRef50_C7Q8B4 Ribonuclease, Rne/Rng family n=1 Tax=Catenulispo... 527 e-148 UniRef50_B3DX65 Ribonuclease G and E n=7 Tax=Verrucomicrobia Rep... 527 e-148 UniRef50_Q2LU58 Ribonuclease E n=1 Tax=Syntrophus aciditrophicus... 526 e-148 UniRef50_B8FM65 Ribonuclease, Rne/Rng family n=1 Tax=Desulfatiba... 525 e-147 UniRef50_A7C082 Ribonuclease G and E n=1 Tax=Beggiatoa sp. PS Re... 524 e-147 UniRef50_C7MPQ3 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycet... 521 e-146 UniRef50_A4XJ17 Ribonuclease G n=7 Tax=Clostridia RepID=A4XJ17_C... 521 e-146 UniRef50_A5EVP9 Ribonuclease g n=16 Tax=Gammaproteobacteria RepI... 520 e-146 UniRef50_D2PUT1 Ribonuclease, Rne/Rng family n=1 Tax=Kribbella f... 520 e-146 UniRef50_B2GGD5 Putative ribonuclease n=1 Tax=Kocuria rhizophila... 520 e-146 UniRef50_UPI0001C430FE cytosolic axial filament protein n=1 Tax=... 519 e-145 UniRef50_C9KMZ9 Ribonuclease G n=2 Tax=Veillonellaceae RepID=C9K... 516 e-145 UniRef50_D2R4N9 Ribonuclease, Rne/Rng family n=2 Tax=Planctomyce... 515 e-144 UniRef50_A4AGL0 Ribonuclease G n=3 Tax=Actinobacteria (class) Re... 515 e-144 UniRef50_A4F9K3 Ribonuclease, Rne/Rng family n=1 Tax=Saccharopol... 515 e-144 UniRef50_D1SD19 Ribonuclease, Rne/Rng family n=1 Tax=Micromonosp... 514 e-144 UniRef50_A0JXK2 Ribonuclease, Rne/Rng family n=4 Tax=Actinomycet... 514 e-144 UniRef50_B0VJP4 Ribonuclease G n=1 Tax=Candidatus Cloacamonas ac... 514 e-144 UniRef50_C4RPB5 Ribonuclease Rne/Rng n=1 Tax=Micromonospora sp. ... 513 e-144 UniRef50_D1BDM1 Ribonuclease, Rne/Rng family n=1 Tax=Sanguibacte... 512 e-143 UniRef50_A8M0Z2 Ribonuclease, Rne/Rng family n=2 Tax=Salinispora... 511 e-143 UniRef50_B0TYI3 Ribonuclease E n=18 Tax=Francisella RepID=B0TYI3... 511 e-143 UniRef50_Q1MQA2 Ribonucleases G and E n=2 Tax=Desulfovibrionacea... 511 e-143 UniRef50_D1BV45 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycet... 510 e-143 UniRef50_B8DIL9 Ribonuclease, Rne/Rng family n=3 Tax=Desulfovibr... 510 e-143 UniRef50_B8HA23 Ribonuclease, Rne/Rng family n=1 Tax=Arthrobacte... 509 e-143 UniRef50_A6GBN9 Ribonuclease G n=1 Tax=Plesiocystis pacifica SIR... 509 e-143 UniRef50_D0LAJ7 Ribonuclease, Rne/Rng family n=1 Tax=Gordonia br... 506 e-142 UniRef50_Q6AIU3 Probable RNAse E n=1 Tax=Desulfotalea psychrophi... 505 e-141 UniRef50_C7QYR2 Ribonuclease, Rne/Rng family n=1 Tax=Jonesia den... 505 e-141 UniRef50_B5JNK0 Ribonuclease, Rne/Rng family n=1 Tax=Verrucomicr... 504 e-141 UniRef50_C7NH23 RNAse G n=1 Tax=Kytococcus sedentarius DSM 20547... 504 e-141 UniRef50_D2NSV3 Ribonuclease G and E n=2 Tax=Rothia mucilaginosa... 503 e-141 UniRef50_C8XF15 Ribonuclease, Rne/Rng family n=1 Tax=Nakamurella... 502 e-140 UniRef50_B2KEH9 Ribonuclease, Rne/Rng family n=1 Tax=Elusimicrob... 502 e-140 UniRef50_D0WNB8 Putative S1 RNA binding domain protein n=1 Tax=A... 500 e-140 UniRef50_C5CAZ2 Ribonuclease, Rne/Rng family n=1 Tax=Micrococcus... 497 e-139 UniRef50_C4PNX0 Ribonuclease E n=17 Tax=Chlamydiales RepID=C4PNX... 497 e-139 UniRef50_UPI0001C31D95 ribonuclease, Rne/Rng family n=1 Tax=Cone... 496 e-139 UniRef50_B6JHD4 Ribonuclease E (RNase E) n=19 Tax=Alphaproteobac... 496 e-138 UniRef50_A3EQR7 Ribonucleases G and E n=3 Tax=Leptospirillum Rep... 495 e-138 UniRef50_UPI0001BC2E10 putative ribonuclease n=1 Tax=Brevibacter... 495 e-138 UniRef50_C2KPN3 Ribonuclease G n=3 Tax=Actinomycetaceae RepID=C2... 495 e-138 UniRef50_B0UJB2 Ribonuclease, Rne/Rng family n=4 Tax=Methylobact... 494 e-138 UniRef50_B2HMG4 Ribonuclease E Rne n=28 Tax=Mycobacterium RepID=... 492 e-137 UniRef50_C0VZF1 Ribonuclease E n=1 Tax=Actinomyces coleocanis DS... 491 e-137 UniRef50_B6INB6 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenu... 490 e-137 UniRef50_D1B5Z1 Ribonuclease, Rne/Rng family n=3 Tax=Synergistac... 490 e-137 UniRef50_A0R152 Ribonuclease, Rne/Rng family protein n=9 Tax=Cor... 489 e-137 UniRef50_C6QC83 Ribonuclease, Rne/Rng family n=1 Tax=Hyphomicrob... 489 e-136 UniRef50_A6WDN2 Ribonuclease, Rne/Rng family n=1 Tax=Kineococcus... 489 e-136 UniRef50_D2LHL1 Ribonuclease, Rne/Rng family n=1 Tax=Rhodomicrob... 488 e-136 UniRef50_C2BMV7 Ribonuclease E n=3 Tax=Corynebacterium RepID=C2B... 488 e-136 UniRef50_D1N7U6 Ribonuclease, Rne/Rng family n=2 Tax=Lentisphaer... 487 e-136 UniRef50_C5VAX0 Ribonuclease E n=5 Tax=Corynebacterium RepID=C5V... 487 e-136 UniRef50_A1AW88 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteo... 486 e-136 UniRef50_A3VT88 Ribonuclease E n=1 Tax=Parvularcula bermudensis ... 485 e-135 UniRef50_A8MHL2 Ribonuclease, Rne/Rng family n=2 Tax=Alkaliphilu... 485 e-135 UniRef50_C0XRI1 Ribonuclease E (Fragment) n=2 Tax=Corynebacteriu... 485 e-135 UniRef50_D1Y9V9 S1 RNA binding domain protein n=3 Tax=Propioniba... 484 e-135 UniRef50_B8CXZ3 Ribonuclease, Rne/Rng family n=1 Tax=Halothermot... 484 e-135 UniRef50_Q7CZH1 Ribonuclease E n=7 Tax=Alphaproteobacteria RepID... 483 e-135 UniRef50_Q2IVP9 RNAse E n=3 Tax=Bradyrhizobiaceae RepID=Q2IVP9_R... 483 e-135 UniRef50_Q92QJ4 Probable ribonuclease E n=1 Tax=Sinorhizobium me... 483 e-135 UniRef50_A8IFL2 Ribonuclease E and G n=6 Tax=Rhizobiales RepID=A... 482 e-134 UniRef50_A6LDG7 Ribonuclease G n=21 Tax=Bacteria RepID=A6LDG7_PARD8 482 e-134 UniRef50_B9JVK9 Ribonuclease E n=40 Tax=Rhizobiales RepID=B9JVK9... 481 e-134 UniRef50_B1H0J1 Ribonuclease G n=1 Tax=uncultured Termite group ... 480 e-134 UniRef50_C0WDS2 Ribonuclease n=1 Tax=Acidaminococcus sp. D21 Rep... 480 e-134 UniRef50_Q1D0P4 Ribonuclease, Rne/Rng family n=7 Tax=Proteobacte... 480 e-134 UniRef50_C0R3W8 Ribonuclease, Rne/Rng family protein n=9 Tax=Wol... 479 e-134 UniRef50_B9JDP7 Ribonuclease E protein n=3 Tax=Alphaproteobacter... 479 e-133 UniRef50_D1BNE2 Ribonuclease, Rne/Rng family n=3 Tax=Veillonella... 478 e-133 UniRef50_B5ZYQ5 Ribonuclease, Rne/Rng family n=7 Tax=Alphaproteo... 478 e-133 UniRef50_C8NQN5 Ribonuclease E n=5 Tax=Corynebacterium RepID=C8N... 478 e-133 UniRef50_D2RM73 Ribonuclease, Rne/Rng family n=1 Tax=Acidaminoco... 478 e-133 UniRef50_C9RQU1 Ribonuclease, Rne/Rng family n=1 Tax=Fibrobacter... 478 e-133 UniRef50_B8EPB2 Ribonuclease, Rne/Rng family n=1 Tax=Methylocell... 477 e-133 UniRef50_Q0BVH1 Ribonuclease E n=2 Tax=Acetobacteraceae RepID=Q0... 477 e-133 UniRef50_C6ADR1 Ribonuclease E n=5 Tax=Rhizobiales RepID=C6ADR1_... 477 e-133 UniRef50_B5ZDP7 Ribonuclease, Rne/Rng family n=12 Tax=Alphaprote... 476 e-133 UniRef50_Q3J4J9 RNAse E n=6 Tax=Rhodobacteraceae RepID=Q3J4J9_RHOS4 475 e-132 UniRef50_C3PI06 Ribonuclease E n=3 Tax=Corynebacterium RepID=C3P... 475 e-132 UniRef50_B1VGM2 Ribonuclease E n=1 Tax=Corynebacterium urealytic... 475 e-132 UniRef50_Q0G6Z6 Ribonuclease E and G n=2 Tax=Rhizobiales RepID=Q... 474 e-132 UniRef50_UPI00003842F2 COG1530: Ribonucleases G and E n=1 Tax=Ma... 473 e-132 UniRef50_C4K6Y9 RNase G (Ribonuclease G) n=2 Tax=Enterobacteriac... 473 e-132 UniRef50_A7HQG8 Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculu... 473 e-132 UniRef50_Q0AWI9 RNAse G n=1 Tax=Syntrophomonas wolfei subsp. wol... 471 e-131 UniRef50_B8DVT8 Ribonuclease G n=7 Tax=Bifidobacterium RepID=B8D... 470 e-131 UniRef50_B0TWF6 Ribonuclease G n=17 Tax=Francisella RepID=B0TWF6... 469 e-131 UniRef50_C6JJB6 Ribonuclease G and E n=2 Tax=Fusobacterium RepID... 466 e-129 UniRef50_C4LJU7 Ribonuclease E n=1 Tax=Corynebacterium kroppenst... 466 e-129 UniRef50_Q11NU1 Ribonuclease G n=10 Tax=Bacteroidetes RepID=Q11N... 465 e-129 UniRef50_Q4JWU2 Ribonuclease E n=2 Tax=Corynebacterium jeikeium ... 465 e-129 UniRef50_C6D805 Ribonuclease, Rne/Rng family n=3 Tax=Bacillales ... 464 e-129 UniRef50_D2RC82 S1 RNA binding domain protein n=8 Tax=Bifidobact... 464 e-129 UniRef50_Q9K8J2 Ribonuclease G (Cytosolic axial filament protein... 463 e-129 UniRef50_Q1IRN1 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 463 e-129 UniRef50_A3ZLB1 Ribonuclease E n=4 Tax=Planctomycetaceae RepID=A... 463 e-129 UniRef50_Q2JW46 Ribonuclease, Rne/Rng family n=4 Tax=Synechococc... 463 e-129 UniRef50_Q8DL99 Ribonuclease E n=3 Tax=Chroococcales RepID=Q8DL9... 462 e-128 UniRef50_C1F7B7 Ribonuclease, Rne/Rng family, insertion n=2 Tax=... 462 e-128 UniRef50_A8LRP5 Ribonuclease n=35 Tax=Rhodobacterales RepID=A8LR... 460 e-128 UniRef50_Q0C4E1 Ribonuclease, Rne/Rng family n=2 Tax=Hyphomonada... 459 e-128 UniRef50_C0ZAL2 Putative ribonuclease G n=1 Tax=Brevibacillus br... 459 e-127 UniRef50_Q31PW1 Ribonuclease, Rne/Rng family n=19 Tax=Cyanobacte... 457 e-127 UniRef50_Q01YX3 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 455 e-126 UniRef50_P72656 Ribonuclease E homolog n=10 Tax=Cyanobacteria Re... 455 e-126 UniRef50_Q2G5W8 Ribonuclease E n=8 Tax=cellular organisms RepID=... 454 e-126 UniRef50_A6CTK6 Cytosolic axial filament protein n=1 Tax=Bacillu... 454 e-126 UniRef50_D1I512 Whole genome shotgun sequence of line PN40024, s... 454 e-126 UniRef50_Q5WES2 Ribonuclease G n=1 Tax=Bacillus clausii KSM-K16 ... 454 e-126 UniRef50_A9ESZ7 Ribonuclease G n=1 Tax=Sorangium cellulosum 'So ... 453 e-126 UniRef50_B0K422 Ribonuclease, Rne/Rng family n=12 Tax=Thermoanae... 453 e-126 UniRef50_C7LYB0 Ribonuclease, Rne/Rng family n=1 Tax=Acidimicrob... 451 e-125 UniRef50_C5CEM0 Ribonuclease, Rne/Rng family n=1 Tax=Kosmotoga o... 450 e-125 UniRef50_Q2S597 Ribonuclease, Rne/Rng family subfamily n=1 Tax=S... 448 e-124 UniRef50_Q89AH3 Putative truncated ribonuclease E n=22 Tax=Bacte... 446 e-123 UniRef50_Q0FAK9 Ribonuclease, Rne/Rng family protein n=1 Tax=Rho... 446 e-123 UniRef50_B6YQX9 Ribonuclease G n=23 Tax=Bacteroidales RepID=B6YQ... 445 e-123 UniRef50_C3W9J7 Ribonuclease G and E n=1 Tax=Fusobacterium morti... 445 e-123 UniRef50_A0L8J1 Ribonuclease E n=1 Tax=Magnetococcus sp. MC-1 Re... 444 e-123 UniRef50_C9LKU5 Cytoplasmic axial filament protein n=1 Tax=Diali... 444 e-123 UniRef50_A7H8A5 Ribonuclease, Rne/Rng family n=1 Tax=Anaeromyxob... 443 e-122 UniRef50_A5FJP9 Ribonuclease, Rne/Rng family n=29 Tax=Bacteroide... 441 e-122 UniRef50_C1PAJ8 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus co... 440 e-122 UniRef50_C9M9G5 Ribonuclease G n=1 Tax=Jonquetella anthropi E3_3... 440 e-122 UniRef50_A5WCI8 RNAse G n=4 Tax=Moraxellaceae RepID=A5WCI8_PSYWF 439 e-121 UniRef50_B1I4P9 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 437 e-121 UniRef50_D2LS23 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus ce... 434 e-120 UniRef50_Q83MU7 Ribonuclease G n=2 Tax=Tropheryma whipplei RepID... 434 e-120 UniRef50_Q7U4C5 Ribonuclease E n=16 Tax=cellular organisms RepID... 432 e-119 UniRef50_A8GXM7 Ribonuclease E n=15 Tax=cellular organisms RepID... 431 e-119 UniRef50_Q2GES6 Ribonuclease, Rne/Rng family n=2 Tax=Neoricketts... 426 e-118 UniRef50_A8F3K6 Ribonuclease, Rne/Rng family n=1 Tax=Thermotoga ... 425 e-117 UniRef50_Q2B6H0 Cytosolic axial filament protein n=1 Tax=Bacillu... 421 e-116 UniRef50_A8UTH4 Cytoplasmic axial filament protein n=1 Tax=Hydro... 418 e-115 UniRef50_A5CEM7 Ribonuclease E n=2 Tax=Orientia tsutsugamushi Re... 418 e-115 UniRef50_A9RK39 Predicted protein n=1 Tax=Physcomitrella patens ... 418 e-115 UniRef50_B3QZC2 Ribonuclease, Rne/Rng family n=12 Tax=Chlorobiac... 416 e-115 UniRef50_A2BYM7 S1 RNA binding domain:Ribonuclease E and G n=8 T... 415 e-114 UniRef50_B2V9I2 Ribonuclease, Rne/Rng family n=4 Tax=Hydrogenoth... 413 e-113 UniRef50_A9VIS0 Ribonuclease, Rne/Rng family n=78 Tax=Bacillus R... 412 e-113 UniRef50_C9XNN6 Ribonuclease g n=8 Tax=Clostridium RepID=C9XNN6_... 407 e-112 UniRef50_D0JBK5 Ribonuclease G n=2 Tax=Blattabacterium RepID=D0J... 406 e-112 UniRef50_B1LBB5 Ribonuclease, Rne/Rng family n=6 Tax=Thermotogac... 405 e-111 UniRef50_Q2GKZ9 Ribonuclease, Rne/Rng family n=10 Tax=Anaplasmat... 404 e-111 UniRef50_A8RTZ4 Putative uncharacterized protein n=1 Tax=Clostri... 401 e-110 UniRef50_A6LNV2 Ribonuclease, Rne/Rng family n=2 Tax=Thermosipho... 401 e-110 UniRef50_Q8GZQ4 Endoribonuclease n=8 Tax=core eudicotyledons Rep... 401 e-110 UniRef50_A9BIJ0 RNA binding S1 domain protein n=1 Tax=Petrotoga ... 401 e-110 UniRef50_C5EUP6 Ribonuclease G n=1 Tax=Clostridiales bacterium 1... 399 e-110 UniRef50_P51211 Ribonuclease E homolog n=2 Tax=Porphyra RepID=RN... 396 e-109 UniRef50_A5I670 Ribonuclease G n=12 Tax=Clostridium RepID=A5I670... 394 e-108 UniRef50_A9KMH0 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium... 390 e-107 UniRef50_C0D9K4 Putative uncharacterized protein n=2 Tax=Clostri... 388 e-106 UniRef50_A5ZQK1 Putative uncharacterized protein n=2 Tax=Clostri... 386 e-106 UniRef50_Q1V2D3 Ribonuclease E/G n=5 Tax=Bacteria RepID=Q1V2D3_P... 384 e-105 UniRef50_C3WSU7 Ribonuclease G n=6 Tax=Fusobacterium RepID=C3WSU... 383 e-105 UniRef50_C0ERY0 Putative uncharacterized protein n=1 Tax=Eubacte... 383 e-104 UniRef50_D0MD03 Ribonuclease, Rne/Rng family n=1 Tax=Rhodothermu... 383 e-104 UniRef50_Q97JL8 Ribonucleases G/E family protein n=1 Tax=Clostri... 381 e-104 UniRef50_A8VZD2 Alanine racemase n=1 Tax=Bacillus selenitireduce... 379 e-104 UniRef50_C6LLP4 Cytoplasmic axial filament protein n=1 Tax=Bryan... 377 e-103 UniRef50_Q3AF57 Ribonuclease, Rne/Rng family n=1 Tax=Carboxydoth... 377 e-103 UniRef50_C6J9J6 Putative uncharacterized protein n=1 Tax=Ruminoc... 376 e-102 UniRef50_UPI0001973AFC ribonuclease n=1 Tax=Clostridium sp. M62/... 376 e-102 UniRef50_C5RGP2 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium... 374 e-102 UniRef50_A6LQR5 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium... 373 e-102 UniRef50_Q9M498 Endoribonuclease E (Fragment) n=6 Tax=Magnolioph... 372 e-101 UniRef50_C3WHH5 Ribonuclease G n=4 Tax=Fusobacterium RepID=C3WHH... 368 e-100 UniRef50_A7HJB9 Ribonuclease, Rne/Rng family n=1 Tax=Fervidobact... 367 e-100 UniRef50_Q0SR50 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium... 367 e-100 UniRef50_Q6B930 Ribonuclease E n=1 Tax=Gracilaria tenuistipitata... 367 e-100 UniRef50_O67311 Cytoplasmic axial filament protein n=1 Tax=Aquif... 357 5e-97 UniRef50_A0Q1T9 Ribonuclease G n=4 Tax=Clostridium RepID=A0Q1T9_... 354 5e-96 UniRef50_B7ANV1 Putative uncharacterized protein n=1 Tax=Bactero... 349 1e-94 UniRef50_A7B8M6 Putative uncharacterized protein n=4 Tax=Clostri... 346 1e-93 UniRef50_B6INE9 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenu... 342 2e-92 UniRef50_A7VBE5 Putative uncharacterized protein n=3 Tax=cellula... 341 4e-92 UniRef50_A0AIZ2 Complete genome n=21 Tax=Listeria RepID=A0AIZ2_L... 338 3e-91 UniRef50_A6MVU3 Ribonuclease E n=1 Tax=Rhodomonas salina RepID=A... 337 5e-91 UniRef50_A4TUF8 Ribonucleases G and E n=1 Tax=Magnetospirillum g... 337 8e-91 UniRef50_C9L8D6 Ribonucleases G and E n=1 Tax=Blautia hansenii D... 336 8e-91 UniRef50_C7G7S7 Ribonuclease, Rne/Rng family n=2 Tax=Roseburia R... 336 1e-90 UniRef50_C0BCI6 Putative uncharacterized protein n=1 Tax=Coproco... 328 3e-88 UniRef50_UPI0001BC3959 ribonuclease G n=1 Tax=Butyrivibrio cross... 324 3e-87 Sequences not found previously or not previously below threshold: >UniRef50_Q1QX63 Ribonuclease E n=5 Tax=Gammaproteobacteria RepID=Q1QX63_CHRSD Length = 1175 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 168/490 (34%), Positives = 270/490 (55%), Gaps = 9/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE AR NIY+GR++R+ P ++AAFVD G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGRITRIEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + +I E++++GQ+++VQV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEISREYFTKEPSGR-----PNIKEVLKEGQEVIVQVDKEERGNKGAALTT 116 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L R+LV MP G+S+RIE + +R +LK + + ++ G I+RTA G Sbjct: 117 FISLAGRFLVLMPNNPRAGGISRRIEGD-DRAQLKDAMGQLTVPDKMGVIVRTAGIGRSP 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL +VW + E + + +Y E + R +RD+ ++ + +DS + Sbjct: 176 EELQWDMDYLVQVWEAITEEAGKRSAPFLIYRESNVIIRAMRDYLRHDIGEVLIDSPEVH 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E L F + +P +K++ Y P+F F +E++I+ A +R+V+L SGG ++ID TEA Sbjct: 236 EEALHFIRQVMPSYQNKIKLYADDVPLFSRFQIESQIETAYQREVKLPSGGAVVIDHTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T TN+EA IARQLRLR++GG+++IDFIDM ++R Sbjct: 296 LVSIDINSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPAKNQRE 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + AL DR + + S GL+EM+R+R R S+ CP C+G+GT++ V + Sbjct: 356 VENRVRDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRS 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR I S + VA L E+ L ++E G QV + P Sbjct: 416 ISLSIMRLIEEEAMKERSSQIRAILPVPVATYLLNEKRSVLNDIEQRQGVQVVLLPNPDM 475 Query: 480 NQEQFDVVMM 489 + +DV + Sbjct: 476 DTPHYDVQRL 485 >UniRef50_Q0VQP0 Phosphoric diester hydrolase n=5 Tax=Gammaproteobacteria RepID=Q0VQP0_ALCBS Length = 1074 Score = 599 bits (1545), Expect = e-170, Method: Composition-based stats. Identities = 163/490 (33%), Positives = 268/490 (54%), Gaps = 6/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE R NIYKG+++RV P ++AAFVD G Sbjct: 2 KRMLINATHPEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + + +I E++++GQ+++VQV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEISRQYFQ--KDPKDIQGRINIKEVIKEGQEVIVQVAKEERGNKGAALTT 119 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S+RIE E ER +LK+ + ++ G I+RTA G Sbjct: 120 FISLAGRYLVLMPNNPRAGGISRRIEGE-ERAQLKEALGALNIPDEMGVIVRTAGLGRSA 178 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++WT + + + + + +Y E + R +RD+ ++ + +DS+ Y Sbjct: 179 EELQWDLNYLLKLWTSIDDASQDRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSKKVY 238 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + F + + + K++ Y P+F F +E++I+ A ER+V+L SGG ++ID TEA Sbjct: 239 DEAQGFVQQVMQDFQHKIKLYDDETPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEA 298 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T TN+EA + IARQLRLR++GG+I++DFIDM ++R Sbjct: 299 LVSIDINSSRATKGADIEETALQTNLEAAEEIARQLRLRDIGGLIVVDFIDMGPARNQRD 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + AL DR + + S GL+E++R+R R S+ CP C G+G ++ V++ Sbjct: 359 VENRMRDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGQGHIRDVKS 418 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R I + AVA L E+ L +E +V + Sbjct: 419 LALSILRLIEEEVMKERTGEIQAQVPVAVATYLLNEKRDPLRAIEKNHKVRVVIIPNQNL 478 Query: 480 NQEQFDVVMM 489 + F+V + Sbjct: 479 DTPHFEVERI 488 >UniRef50_Q2P196 Ribonuclease E n=28 Tax=Proteobacteria RepID=Q2P196_XANOM Length = 1240 Score = 597 bits (1540), Expect = e-169, Method: Composition-based stats. Identities = 179/490 (36%), Positives = 275/490 (56%), Gaps = 8/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L +I IE+ ++ NIYKGR++R+ P ++AAFVD G Sbjct: 2 KRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + K I EL+R+GQ+++VQV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEISRDYFQAGVDHNK----STIRELLREGQEIVVQVDKEERGNKGAALTT 117 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RY+V MP + GVS+RIE E +R LK+ + + + G IIRTA G Sbjct: 118 FISLAGRYMVLMPNSPSAGGVSRRIEGE-DRAALKEALDKLDIPDDMGVIIRTAGVGRDA 176 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL + W + E + +Y E L R LRD+ A++ I VD+ Y Sbjct: 177 EELQWDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELY 236 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 EF + +P+ KL+HYT P+F+ F +E++I+ A ER V L SGG +++DQTEA Sbjct: 237 ADAQEFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEA 296 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T VD+N+ ++++T F TN+EA + +ARQLRLR+LGG+++IDFIDM + H+R Sbjct: 297 LTAVDVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQRE 356 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L+ AL DR + + S GL+EM+R+R R S+ CP C G G +++VE+ Sbjct: 357 VENKLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVES 416 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R ++ + LV A +A L E+ +L E+E + + + Sbjct: 417 LSLSIIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESPIIIVADEQL 476 Query: 480 NQEQFDVVMM 489 + ++V + Sbjct: 477 HTPHYEVTRL 486 >UniRef50_Q0A8Q8 Ribonuclease E n=8 Tax=Gammaproteobacteria RepID=Q0A8Q8_ALHEH Length = 1073 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 172/490 (35%), Positives = 268/490 (54%), Gaps = 6/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE AR NIYKG ++RV P ++AAFV G Sbjct: 2 KRMLINATQPEELRVALVDGQQLYDLDIETPAREQKKANIYKGTITRVEPSLEAAFVQYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I P + I + VR+GQ+++VQV K+ GTKGA LTT Sbjct: 62 AERHGFLPFKEIAPSYYREGLKADGGR--PSIRDAVREGQEVVVQVDKEERGTKGAALTT 119 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP GVS+RIE S+R +++ + + E G I+RTA G Sbjct: 120 YISLAGRYLVLMPNNPRAGGVSRRIEG-SDRAEIREALRQLDVPEGMGLIVRTAGVGRTV 178 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++W+ + + + + +Y E + R LRD+ +++ I +D + Sbjct: 179 EELQWDLDYLLKLWSAIQKAAEARSAPFLIYQESDVIIRALRDYLRSDIGEILIDDPQVF 238 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E +EF + +P KL++Y R P+F + +E++I+ A +R V L SGG ++ID TEA Sbjct: 239 EKAVEFVEQVMPYNRQKLKYYDDRVPLFTRYQIESQIESAFQRDVRLPSGGAIVIDHTEA 298 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T +TN+EA IARQLRLR+LGG+I+IDFIDM ++R Sbjct: 299 LISIDINSARATKGSDIEETALHTNLEAADEIARQLRLRDLGGLIVIDFIDMGPNRNQRE 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L +A+ DR + + S GL+EM+R+R R S+ C C G+GTV++VE+ Sbjct: 359 VENRLREAVKADRARVQIGRISRFGLLEMSRQRLRSSLGESHQEVCARCGGQGTVRSVES 418 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R + + L VA L E+ S++E+E V + Sbjct: 419 LALSILRIVEEEAMKEKTGTVLAQLPVDVATFLLNEKRPSISEIEDRHRVAVVLIPNRTM 478 Query: 480 NQEQFDVVMM 489 +DV + Sbjct: 479 ETPHYDVQRL 488 >UniRef50_C5BU48 Ribonuclease E n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BU48_TERTT Length = 1070 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 158/490 (32%), Positives = 253/490 (51%), Gaps = 6/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE + NIYKG+++R+ P ++AAFV+ Sbjct: 2 KRMLINATQPEELRVALVDGQWLYDLDIENRLKEQRKANIYKGKITRIEPSLEAAFVEYD 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I E I ++V++G +++VQV K+ G KGA LTT Sbjct: 62 KGRNGFLPLKEISREYFLKQPNEIDGRI--RIKDVVKEGMEVIVQVDKEERGNKGAALTT 119 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S+RI +R LK +++ G I+RTA G Sbjct: 120 FISLAGRYLVLMPNNPRAGGISRRI-DGDDRSELKDALSQIEIPNGMGIIVRTAGVGRSA 178 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL +W + E + L+ E + R +RD+ ++ + VD Y Sbjct: 179 EELQWDMNYLTTLWNNIQEAANQSTAPAFLFQESNVIIRAIRDYLRPDIGEVIVDDIAAY 238 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 +F +P SK++ Y P+F+ + +E +I+ A ER+V+L SGG ++ID TEA Sbjct: 239 NQAADFVQMVMPNYRSKVKLYEKSVPLFNHYQIEGQIETAFEREVKLPSGGSIVIDVTEA 298 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T TN+EA IARQLRLR++GG+++IDFIDM ++R Sbjct: 299 LVSIDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQRA 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + AL DR + V S GL+EM+R+R R S+ CP C G+GT++ ++ Sbjct: 359 VENRVRDALKMDRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTIRGTKS 418 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R + S VA L E+ S++++E +V V Sbjct: 419 IALSILRLVEEEAQKERSAEIRAVVPVPVATYLLNEKRKSISDIENRHQTRVTVLPNTEM 478 Query: 480 NQEQFDVVMM 489 ++V + Sbjct: 479 VTPHYEVTRL 488 >UniRef50_C8PW15 Ribonuclease E n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PW15_9GAMM Length = 1266 Score = 581 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 161/489 (32%), Positives = 261/489 (53%), Gaps = 9/489 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 2 KRILINATHAEEIRVALCNGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I P + +I +L+++G +L+VQV K+ G KGA L+T Sbjct: 62 SQRQGFLPIREIAPEYLA-----GDPRSTTNIKQLIKEGDELIVQVEKEERGNKGAALST 116 Query: 122 DITLPSRYLVFMPGA-SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S++I + R+ +K+ ++E + IIRTA G Sbjct: 117 LISLAGRYLVLMPNNARGGGISRQISGK-LRDEMKQALSELRLPKGMSVIIRTAGIGKTT 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D +L +W + ++ ++ + L+ E + R +RD+ ++ I VD+ Y Sbjct: 176 DELQQDLDHLLNIWKGIQQQSQKFPSPRLLHQEAGVVTRAVRDYLRDDITEIWVDNEYAY 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 F +P+ +KL YT +P+F F +E +I+ A +R+V L SGG ++IDQTEA Sbjct: 236 NEAANFIEAVMPQQANKLRKYTDYEPMFARFGIEKQIETAYQREVRLPSGGSIVIDQTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++ +T FNTN+EA IARQLRLR++GG+I+IDFIDM +DH+++ Sbjct: 296 LVSIDINSSKATKGADVSETAFNTNLEAADEIARQLRLRDMGGLIVIDFIDMATDDHQKQ 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L++A DR + S GL+EM+R+R R S+E CP CHG G ++ + + Sbjct: 356 VENRLKEATKNDRARIQFAEISRFGLLEMSRQRLRPSLEEATGYLCPRCHGTGMIRDLRS 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR+I + +A L E+ +L +E G ++ + Sbjct: 416 LALSIMRQIEQRALQERHGEVQAEVPTDIAAFLLNEKRETLVCLEQESGTRITILPHAHL 475 Query: 480 NQEQFDVVM 488 +F++ Sbjct: 476 ESPEFNITY 484 >UniRef50_A3JIF1 Ribonucleases G and E n=2 Tax=Gammaproteobacteria RepID=A3JIF1_9ALTE Length = 1092 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 164/490 (33%), Positives = 267/490 (54%), Gaps = 6/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE +R NIYKG+++RV P ++AAFVD G Sbjct: 2 KRMLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGKITRVEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL +I + +I +++ +GQ+++VQV K+ G KGA LTT Sbjct: 62 ADRHGFLPLKEISKEYF--KKSPGQIEGKVNIKDVIAEGQEVIVQVDKEERGNKGAALTT 119 Query: 122 DITLPSRYLVFMPGA-SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S+RIE E ER +LK+ + + + G I+RTA G Sbjct: 120 YISLAGRYLVLMPNNARAGGISRRIEGE-ERAQLKEAMNQVQVPKSMGIIVRTAGIGRNS 178 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL + W + + + + ++ E + R +RD+ ++ + +D+ + Sbjct: 179 EELQWDLDYLVQFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDAAAVH 238 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E +L F +P +K++ Y+ P+F + +E +I+ A +R+V+L SGG ++ID TEA Sbjct: 239 EDVLNFVRAVMPTFENKIKLYSDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEA 298 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T TN+EA + I RQLRLR++GG+I+IDFIDM ++R Sbjct: 299 LVSIDINSSRATKGHDIEETALQTNLEAAEEIGRQLRLRDMGGLIVIDFIDMTPARNQRE 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + +AL DR + V S GL+EM+R+R R S+ CP C G+GT++ +E+ Sbjct: 359 VENKMREALEIDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIES 418 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR I + +VA L E+ LA +E + + P Sbjct: 419 LALSIMRLIYEESSKDKTGEVRAVVPVSVATFLLNEKRKQLATIEANQEVSIVIVPVPQM 478 Query: 480 NQEQFDVVMM 489 F+++ M Sbjct: 479 ETPHFEIIRM 488 >UniRef50_C7RBE6 Ribonuclease, Rne/Rng family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBE6_KANKD Length = 951 Score = 579 bits (1494), Expect = e-164, Method: Composition-based stats. Identities = 157/491 (31%), Positives = 261/491 (53%), Gaps = 9/491 (1%) Query: 3 AELLVNVT--PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 +L+N T E RVA +DG L ++ IE R GNIYKG+V+R+ P ++AAFVD Sbjct: 2 RRMLINATNHHEELRVALVDGQRLYDLDIELAGREQKKGNIYKGKVTRIEPSLEAAFVDY 61 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G ++ FL ++ A + I E +++GQ+++VQ+ K+ G KGA LT Sbjct: 62 GAERHGFLPLKEVAREYMQNAPSRGR----PTIKEALKEGQEIIVQIDKEERGNKGAALT 117 Query: 121 TDITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 T I+L YLV MP G+S+RIE + ER LK+V+++ G I+RTA G Sbjct: 118 TSISLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKQVMSQLPVPNGMGCIVRTAGIGKS 176 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 E+ D YL W + + + + E + R +RD+ ++ I +D Sbjct: 177 LEEIQYDFNYLIDTWNGIKQVAGTRPAPFLITQESDVITRAIRDYLRPDIGEIIIDRPEI 236 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 YE + P+ SK++ Y P+F+ + VE++I+ A +R+V L SGG ++ DQTE Sbjct: 237 YERVKSELQYQRPDFVSKVKLYRDEIPLFNRYQVESQIESAFQREVRLPSGGSVVFDQTE 296 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ ++DIN+ ++++T +TN+EA + IARQLRLR++GG+I+IDFIDM ++R Sbjct: 297 ALLSIDINSARATKGGDIEETALHTNVEAAEEIARQLRLRDIGGLIVIDFIDMGPPRNQR 356 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V L+ ++++DR + + S GL+EM+R+R R S+E + CP C G G ++ + Sbjct: 357 EVERVLKDSVARDRARIQIGRISRFGLLEMSRQRLRPSLEESSQHVCPRCTGSGVIRGTD 416 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPL 478 ++ I+R + + VA L E+ + ++E ++ V P Sbjct: 417 SLALSILRLMEDEAMKESTAEVQAVVPVEVATFLLNEKRRKIEQIEKRQKVRLVVVPNPY 476 Query: 479 YNQEQFDVVMM 489 ++V+ + Sbjct: 477 LETPHYEVLRV 487 >UniRef50_A6VXP7 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteobacteria RepID=A6VXP7_MARMS Length = 1071 Score = 577 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 158/489 (32%), Positives = 266/489 (54%), Gaps = 7/489 (1%) Query: 4 ELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +L+N T E RVA +DG L ++ IE +R NIYKGR++R+ P ++AAFVD G Sbjct: 3 RMLINATQQEELRVALVDGQRLYDLDIESGSREQKKSNIYKGRITRIEPSLEAAFVDFGA 62 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 D+ FL +I + + +I +++ +GQ+++VQV K+ G KGA LTT Sbjct: 63 DRHGFLPLKEISKTYFSKKSNHEGRI---NIKDVLSEGQEVIVQVDKEERGNKGAALTTF 119 Query: 123 ITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEA 180 ++L RYLV MP G+S+RI +R LK+ ++ E GG I+RTA G Sbjct: 120 VSLAGRYLVLMPNNPRAGGISRRI-DGDDRSHLKEAMSGLNTPENGGLIVRTAGVGRSTE 178 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 EL D YL +W+ + + + +Y E + R +RD+ ++ + +D + Y+ Sbjct: 179 ELQWDLDYLDTLWSSITKAASEKPAPFLIYQESNIVIRAIRDYLREDIGEVLIDEKSAYQ 238 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + F + +P S+++ YT P+F+ F +E +I+ A +R+V L SGG ++ID TEA+ Sbjct: 239 DAINFVMQVMPHFKSRIKMYTDSTPLFNRFQIETQIETAFQREVRLPSGGSIVIDPTEAL 298 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 ++DIN+ ++++T TN+EA IARQLRLR++GG+++IDFIDM +++ V Sbjct: 299 VSIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPVRNQKEV 358 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 ++ AL DR + + S GL+EM+R+R R S+ CP C+G+G ++ VE++ Sbjct: 359 ETRMKNALEADRARVQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGFIRDVESL 418 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 ++R I + + +VA L E+ ++A++E + + P Sbjct: 419 ALSVLRLIEEECSKERTAQIRAVLPVSVATFLLNEKRTNIAKIEKRNNVHIILVPNPHME 478 Query: 481 QEQFDVVMM 489 F+V + Sbjct: 479 TPHFEVERI 487 >UniRef50_Q1YTQ8 Ribonuclease E n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTQ8_9GAMM Length = 1008 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 172/490 (35%), Positives = 269/490 (54%), Gaps = 7/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N + E RVA +DG L ++ IE R NIYKG+++RV P ++AAFVD G Sbjct: 2 KRMLINASHTEEVRVAMVDGQKLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL +I + + +I + +R+GQ++ VQV K+ G+KGA LTT Sbjct: 62 ADRHGFLPLKEISREYFKGKSSDGGRV---NIKDAIREGQEIFVQVEKEERGSKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S+RIE E ER L++ + E G I+RTA G Sbjct: 119 FISLAGRYLVLMPNNPRAGGISRRIEGE-ERADLREAMRGLDIPEGMGAIVRTAGIGRAT 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++W + + + + L+ E + R +RD+ ++ + VDS+ Y Sbjct: 178 EELQWDLDYLLQLWNTIEAEAEGAKAPHFLFQESNVIVRAIRDYLRQDVGEVIVDSQDAY 237 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 F +P+ T+K++ Y + P+F+ + +EN+I+ A R+V L SGG ++ID TEA Sbjct: 238 NLAAAFIGTVMPDFTNKVKFYQEQIPLFNRYQIENQIETAFRREVSLPSGGSIVIDITEA 297 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 M ++DIN+ ++++T FNTN EA + +ARQLRLR++GG+I+IDFIDM N H++ Sbjct: 298 MVSIDINSARATKGGDIEETAFNTNKEAAEEVARQLRLRDVGGLIVIDFIDMLNTRHQKE 357 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V +++ +AL DR + V S GL+EM+R+R R S+E + CP C G+GT++ + Sbjct: 358 VENTIREALKIDRARVQVGRISRFGLLEMSRQRLRPSLEETMSKICPRCKGQGTIRGTRS 417 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R I S +VA L E+ +A++E V V Sbjct: 418 LALSILRLIEEEAQKEFSKEIRAIVPVSVATFLLNEKRSEIADIESRNKINVVVLPNTQM 477 Query: 480 NQEQFDVVMM 489 F+VV + Sbjct: 478 ETPHFEVVRI 487 >UniRef50_B0BR35 Ribonuclease E n=14 Tax=Pasteurellaceae RepID=B0BR35_ACTPJ Length = 995 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 157/490 (32%), Positives = 255/490 (52%), Gaps = 7/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG+++RV P ++AAFVD G Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + +I +++++GQ+++VQV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEISREYFPADYVFNGR---PNIKDIIKEGQEVIVQVSKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP G+S+RIE + ER LK+ + E G I+RTA G Sbjct: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-ERLELKEALDCLDVPEDVGLIVRTAGVGKSP 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D L W + + + + ++ E + R +RD+ ++ I +D++ + Sbjct: 178 EELQWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIF 237 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E P+ +++ Y G P+F + +E++I+ A +R+V L SGG ++ID TEA Sbjct: 238 EKAKNHIRLVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEA 297 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T +DIN+ ++++T NTN+EA IARQLRLR+LGG+I+IDFIDM H+R Sbjct: 298 LTAIDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRE 357 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + +A +DR + + S GL+EM+R+R S+ + CP C G G V+ E+ Sbjct: 358 VENRIREATRQDRARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES 417 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R + ++ + +A L E+ +++ +E QV V Sbjct: 418 IALSILRLLEEEAIKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHDVQVVVVPTESM 477 Query: 480 NQEQFDVVMM 489 F V + Sbjct: 478 ETPHFSVYRL 487 >UniRef50_Q2SK60 Ribonucleases G and E n=3 Tax=Gammaproteobacteria RepID=Q2SK60_HAHCH Length = 1056 Score = 575 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 161/490 (32%), Positives = 268/490 (54%), Gaps = 7/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE R NIYKG+++R+ P ++AAFVD G Sbjct: 2 KRMLINATQPEELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I ++ + +I +L+++GQ++++QV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEISREYFKSQPQKGGKM---NIKDLLQEGQEIIIQVDKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S+RIE + +R++LK ++ + G IIRTA G Sbjct: 119 FISLAGRYLVLMPNNPRAGGISRRIEGD-DRDQLKDAMSGLTVPKDMGLIIRTAGVGRSS 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL + W + + +Y E + R RD+ ++ + +D + Sbjct: 178 KELQRDLDYLLQFWDSIRHASDSKPAPFLIYQESNVVIRATRDYLRQDIGEVLIDHPQVH 237 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + L F +P ++++ Y P+F+ + +E++I+ A +R+V+L SGG ++ID TEA Sbjct: 238 QDALNFVKAVMPNFENRIKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDPTEA 297 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T TN+EA IARQLRLR++GG+I+IDFIDM ++R Sbjct: 298 LVSIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLIVIDFIDMTPNKNQRE 357 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L++AL DR + + S GL+EM+R+R R S+ CP C G+G+++ VE+ Sbjct: 358 VENRLKEALELDRARVQIGKISRFGLLEMSRQRLRPSLGETRNEMCPRCKGQGSIRGVES 417 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + +MR I + +VA L E+ +LA+ + G +V V Sbjct: 418 LALSVMRLIEEEAFKERTAEVRAICPISVATYLLNEKRENLAKTQKRHGVKVIVVPNSHM 477 Query: 480 NQEQFDVVMM 489 + F+V + Sbjct: 478 DTPHFEVQRI 487 >UniRef50_C4X6M8 RNase E n=25 Tax=Gammaproteobacteria RepID=C4X6M8_KLEPN Length = 1077 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 158/492 (32%), Positives = 264/492 (53%), Gaps = 9/492 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + +I +++R+GQ+++VQ+ K+ G KGA LTT Sbjct: 62 AERHGFLPLKEIAREYFPANYNAHGR---PNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP G+S+RIE + +R LK+ +A + G I+RTA G Sbjct: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPDGMGLIVRTAGVGKSA 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D ++ + W + + + + ++ E + R RD+ ++ I +D+ Sbjct: 178 EALQWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 Query: 240 EALLEFTSEY-IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 E + + P+ +SK++ YTG P+F + +E++I+ A +R+V L SGG ++ID TE Sbjct: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +DIN+ ++++T FNTN+EA IARQLRLR+LGG+I+IDFIDM H+R Sbjct: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V + L +A+ +DR + ++ S GL+EM+R+R S+ + CP C G GTV+ E Sbjct: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVG-KQVKVQIEP 477 ++ I+R I ++ +A L E+ +++ +E G +V + Sbjct: 418 SLSLSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPND 477 Query: 478 LYNQEQFDVVMM 489 + V+ + Sbjct: 478 EMQTPHYSVLRV 489 >UniRef50_A8FWL8 Ribonuclease, Rne/Rng family n=38 Tax=Gammaproteobacteria RepID=A8FWL8_SHESH Length = 1201 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 164/489 (33%), Positives = 263/489 (53%), Gaps = 7/489 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG+++RV P ++AAFVD G Sbjct: 2 KRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL +I Q + +I E+V++GQ+++VQ+ K+ G KGA LTT Sbjct: 62 ADRHGFLPLKEIAREYFPKGYSFQGR---PNIKEVVKEGQEVIVQIDKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP G+S+RIE + ER LK ++E + G I+RTA G Sbjct: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKAAMSELEVPQGMGLIVRTAGVGKDS 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 AEL D L+ WT + E + + ++ E + R +RD+ ++ + +D + Sbjct: 178 AELKWDLKVLEHHWTAIKEASEGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIF 237 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E + + P+ +++ Y P+F F +E +I+ A +R+V L SGG ++ID TEA Sbjct: 238 EDAKQHVALVRPDFVDRIKQYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEA 297 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T++DIN+ ++++T NTN+EA +ARQLRLR+LGG+++IDFIDM H+R Sbjct: 298 LTSIDINSARATKGGDIEETALNTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQRE 357 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + A+ DR + + S GL+EM+R+R R S+E + CP CHG+GT++ E+ Sbjct: 358 VENRMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTES 417 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R + ++ + VA L E+ ++ E +V V +P Sbjct: 418 LALSILRLMEEEAIKENTSQIEATVPVDVAAFLLNEKRKAIRITEQRHDVEVYVIPDPNM 477 Query: 480 NQEQFDVVM 488 + VV Sbjct: 478 TTPDYRVVR 486 >UniRef50_B5EL09 Ribonuclease, Rne/Rng family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EL09_ACIF5 Length = 782 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 165/489 (33%), Positives = 263/489 (53%), Gaps = 9/489 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IER R NIYKGR++RV P ++AAFVD G Sbjct: 2 KRMLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + +K+ I +LVR+GQ+++VQV K+ +KGA LTT Sbjct: 62 AERHGFLPLKEIAREYFQQQEQGRKR-----IQDLVREGQEIIVQVDKEERSSKGAALTT 116 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 ++L RYLV MP GVS+RIE E +R ++++ + E G I RTA G Sbjct: 117 FVSLAGRYLVLMPNNPRAGGVSRRIEGE-DRTQIRQHLQLLDIPENMGVIARTAGIGQEL 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D YLK++W +++ + +Y E + R LRD ++ + +D Y Sbjct: 176 EALQRDLEYLKQIWQAIVDTAAPRAAPFLIYQEGNVVVRALRDHFSEDIGEVLIDEEGAY 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 A ++F +P+M +L++Y P+F + +E +I+ A R+V L+SGG ++ID TEA Sbjct: 236 NAAVQFMGSMMPKMVHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + VD+N+G +++ +T F TN+EA + IARQ+RLR+LGG+I++DFIDM + H+R Sbjct: 296 LVAVDVNSGRATKGQDIAETAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQRE 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L++AL DR + + S GL+EM+R+R S+E CP C+G G ++ E Sbjct: 356 VENKLKEALKLDRARVQLGRISRFGLMEMSRQRLGASLEEASSEPCPRCNGTGQIRGCEA 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 ++R + + VA L E+ + E+E ++ V P Sbjct: 416 TSMHVLRLLYEECMKTGAAEVECQVPVDVAVYLLNEKRRQILELEAKTDTRILVIPTPEM 475 Query: 480 NQEQFDVVM 488 + + Sbjct: 476 VTPHYQIQR 484 >UniRef50_P21513 Ribonuclease E n=119 Tax=Gammaproteobacteria RepID=RNE_ECOLI Length = 1061 Score = 570 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 158/492 (32%), Positives = 262/492 (53%), Gaps = 9/492 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + +I +++R+GQ+++VQ+ K+ G KGA LTT Sbjct: 62 AERHGFLPLKEIAREYFPANYSAHGR---PNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP G+S+RIE + +R LK+ +A E G I+RTA G Sbjct: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSA 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D ++ + W + + + + ++ E + R RD+ ++ I +D+ Sbjct: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 Query: 240 EALLEFTSEY-IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 E + + P+ +SK++ YTG P+F + +E++I+ A +R+V L SGG ++ID TE Sbjct: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +DIN+ ++++T FNTN+EA IARQLRLR+LGG+I+IDFIDM H+R Sbjct: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V + L +A+ +DR + ++ S GL+EM+R+R S+ + CP C G GTV+ E Sbjct: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFV-GKQVKVQIEP 477 ++ I+R I ++ +A L E+ ++ +E G + + Sbjct: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 Query: 478 LYNQEQFDVVMM 489 + V+ + Sbjct: 478 QMETPHYHVLRV 489 >UniRef50_P0A9J2 Ribonuclease G n=523 Tax=cellular organisms RepID=RNG_ECO57 Length = 489 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 489/489 (100%), Positives = 489/489 (100%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI Sbjct: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT Sbjct: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA Sbjct: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE Sbjct: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM Sbjct: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV Sbjct: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV Sbjct: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN Sbjct: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 Query: 481 QEQFDVVMM 489 QEQFDVVMM Sbjct: 481 QEQFDVVMM 489 >UniRef50_Q7MM07 Ribonuclease E n=15 Tax=Gammaproteobacteria RepID=Q7MM07_VIBVY Length = 1036 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 161/490 (32%), Positives = 260/490 (53%), Gaps = 7/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKGR++RV P ++AAFVD G Sbjct: 2 KRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I Q + I E++ +GQ+++VQ+ K+ G+KGA LTT Sbjct: 62 AERHGFLPLKEIAKEYFPDGYSYQGR---PSIKEVLTEGQEVIVQIEKEERGSKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP G+S+RIE + ER LK ++ + G I+RTA G Sbjct: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKSALSTLELPQGMGLIVRTAGVGKSA 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D L + W + + + + ++ E + R +RD+ ++ I +DS Y Sbjct: 178 EELEWDLNVLLKHWAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIY 237 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E E P+ ++++ Y G P+F + +E++I+ A +R+V L SGG ++ID TEA Sbjct: 238 ERAKEHIQLVRPDFVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEA 297 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T++DIN+ ++++T NTN+EA IARQLRLR+LGG+++IDFIDM H+R Sbjct: 298 LTSIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQRE 357 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L +A+ DR + + S GL+EM+R+R S+ + CP C G G V+ E+ Sbjct: 358 VENRLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNES 417 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + ++R I ++ + L +A L E+ S+ +E ++ V Sbjct: 418 LALSVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDM 477 Query: 480 NQEQFDVVMM 489 F+V+ + Sbjct: 478 ETPHFEVIRV 487 >UniRef50_C1DR24 Ribonuclease E n=27 Tax=Gammaproteobacteria RepID=C1DR24_AZOVD Length = 1139 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 168/490 (34%), Positives = 268/490 (54%), Gaps = 9/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L ++ IE AR NIYKGR++RV P ++AAFVD G Sbjct: 2 KRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + E + +I +++ +GQ+++VQV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEISREYFKKSPEGR-----INIKDVLSEGQEVIVQVEKEERGNKGAALTT 116 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S+RIE E ER L++ + G I+RTA G Sbjct: 117 FISLAGRYLVLMPNNPRAGGISRRIEGE-ERNELREALNGLDVPADMGLIVRTAGLGRSS 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++WT + E + +Y E + R +RD+ ++ + +DS Sbjct: 176 EELQWDLDYLVQLWTAIKEASLDRSPPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQ 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E L F + +P+ SK++ Y P+F+ F +E++I+ A +R+V+L SGG ++ID TEA Sbjct: 236 EEALSFIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T TN+EA + IARQLRLR++GG+I+IDFIDM ++R Sbjct: 296 LVSIDINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRA 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + +AL DR + + S GL+EM+R+R R S+ CP C G+G ++ VE+ Sbjct: 356 VEDKMREALEADRARVQIGRISRFGLLEMSRQRLRPSLGETSGIVCPRCSGQGIIRDVES 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R I + VA L E+ +S+ ++E+ ++ + Sbjct: 416 LSLAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRVRIVILPSDHM 475 Query: 480 NQEQFDVVMM 489 F+V + Sbjct: 476 ETPHFEVQRL 485 >UniRef50_B5JUW5 Ribonuclease E n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUW5_9GAMM Length = 914 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 164/490 (33%), Positives = 267/490 (54%), Gaps = 5/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T P E RVA +DG L + IE +R NIYKG ++RV P ++AAFVD G Sbjct: 2 KRMLINATQPEELRVAIVDGQKLINLDIEVPSREQKKANIYKGVITRVEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I E ++ + +++GQ+L++QV K+ G KGA +TT Sbjct: 62 AERHGFLPFKEINRRYL-PDDIETNDNGRPNVKDGIKEGQELIIQVEKEERGNKGAAITT 120 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 +I+L RYLV MP + GVS+RIE E ER ++++ + + + G I+RTA G Sbjct: 121 NISLAGRYLVAMPHSPRSGGVSRRIEGE-ERAQVREAMQDMTIPDGTGVIVRTAGVGRTS 179 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++W + + + Q + +Y E + R LRD ++ I +D + Sbjct: 180 EELQWDFDYLAQIWEAIEKAAESRQGPFLIYQESNVIIRALRDHYRDDIGEILIDEAGIH 239 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + +F S + KL+ Y P+F+ + +E++I+ A +R+V L SGG +++D TEA Sbjct: 240 KQANDFMSLAMQNDLRKLKFYEDSVPLFNRYQIESQIESAFQREVRLPSGGSIVVDPTEA 299 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T++DIN+ N+D+T NTN+EA IARQLRLR+LGG+++IDFIDM + H+R Sbjct: 300 LTSIDINSARATKGSNIDETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMGSNKHQRE 359 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L A+ DR + N S GL+EM+R+R R S+ CP C G GT++++E+ Sbjct: 360 VENRLRDAVRIDRARVQTNRISKFGLLEMSRQRLRPSLGESSKEVCPRCEGHGTIRSIES 419 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + ++R + ++ R + VA + E+ +AE+E + + Sbjct: 420 LALAVLRIMEEEALKENTGRVIAQLPVDVATFMLNEKRQQVAELENRNSIDLLIVPNKAL 479 Query: 480 NQEQFDVVMM 489 + V + Sbjct: 480 ETPHYVVERV 489 >UniRef50_P44443 Ribonuclease E n=98 Tax=Gammaproteobacteria RepID=RNE_HAEIN Length = 935 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 155/490 (31%), Positives = 256/490 (52%), Gaps = 7/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG+++RV P ++AAFVD G Sbjct: 2 KRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I Q + +I +++ +GQ+++VQV K+ G KGA LTT Sbjct: 62 AERHGFLPLKEIAREYFPDDYVFQGR---PNIRDILVEGQEVIVQVNKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 ++L YLV MP G+S+RIE + ER LK+ ++ + G I+RTA G Sbjct: 119 FVSLAGSYLVLMPNNPRAGGISRRIEGD-ERTELKEALSSLDVPDGVGLIVRTAGVGKSP 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D L W + + + + ++ E + R +RD+ ++ I +DS + Sbjct: 178 EELQWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIF 237 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E E P+ ++++ Y G P+F + +E++I+ A +R+V L SGG ++ID TEA Sbjct: 238 EKAKEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEA 297 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T +DIN+ ++++T NTN+EA IARQLRLR+LGG+++IDFIDM H+R Sbjct: 298 LTAIDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQRE 357 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + A+ DR + ++ S GL+EM+R+R S+ + CP C G G V+ E+ Sbjct: 358 VENRIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNES 417 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R + ++ + +A L E+ +++ +E + V Sbjct: 418 LSLSILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHNVDIIVAPNEAM 477 Query: 480 NQEQFDVVMM 489 F V + Sbjct: 478 ETPHFSVFRL 487 >UniRef50_A9ADG1 Ribonuclease, Rne/Rng family n=89 Tax=Betaproteobacteria RepID=A9ADG1_BURM1 Length = 1111 Score = 566 bits (1459), Expect = e-160, Method: Composition-based stats. Identities = 156/492 (31%), Positives = 251/492 (51%), Gaps = 10/492 (2%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L N T E RVA +DG L +I IE R GNIYKG V+R+ P ++A FV+ G Sbjct: 59 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYG 118 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL ++ ++ I + +R+GQ+L+VQV K+ G KGA LTT Sbjct: 119 EDRHGFLPFKEVARQYF----KDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTT 174 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP GVS+RIE + ER+ L++ +A+ + I RTA G Sbjct: 175 FISLAGRYLVLMPNNPRGGGVSRRIEGD-ERQELRETMAQLQIPDGMSMIARTAGIGRSA 233 Query: 180 AELASDAAYLKRVWTKVMERKKRPQT--RYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 EL D YL ++W + + +Y E +L R +RD+ ++ I +D+ Sbjct: 234 EELQWDLNYLLQLWRAIEAASQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTE 293 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 Y+ F +P+ SK++ Y P+F F +E++I+ A R V L SGG ++ID T Sbjct: 294 IYDQARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHT 353 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+ +D+N+ ++++T TN+EA +ARQLRLR+LGG+I+IDFIDM + + Sbjct: 354 EALVAIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQ 413 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V L+ AL DR + + S GL+E++R+R R ++ CP C+G G ++ Sbjct: 414 REVEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDT 473 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 E+ +++R I ++ V L E+ + ++E + + Sbjct: 474 ESSALQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNK 533 Query: 478 LYNQEQFDVVMM 489 + + + + Sbjct: 534 HLDTPHYKLERL 545 >UniRef50_D0L1K6 Ribonuclease, Rne/Rng family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K6_HALNC Length = 1016 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 171/490 (34%), Positives = 265/490 (54%), Gaps = 6/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L +I IE N+YK ++R+ P ++A FV+ G Sbjct: 2 KRMLINATQAEEIRVALVDGQTLYDIDIETPGHEQKKSNVYKALITRIEPSLEAVFVNYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL +I + K + I +++GQ+++VQV K+ G KGA LTT Sbjct: 62 ADRHGFLPFKEIARSYFDSEAVDDKGRPI--IKSALKEGQEIIVQVEKEERGNKGAALTT 119 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 ++L RYLV MP GVS+RIE + +R +K ++E E G I+RTA G Sbjct: 120 FVSLAGRYLVLMPNNPRAGGVSRRIEGD-DRAEIKAALSELVVPEGMGLIVRTAGVGREP 178 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 AEL SD YL++VW ++++ + + + +Y E L R LRD+ ++ + +D + Sbjct: 179 AELQSDLDYLQQVWDAIVKKSEARKAPFLIYQESDLIIRALRDYMRNDIGEVLIDEPNMH 238 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + L+F + P+ K+ Y R P+F + +E++I+ A ER V L SGG L+ D EA Sbjct: 239 QQALDFVNLVSPDSVDKIRLYQDRTPLFTRYQIESQIESAYERNVTLPSGGELVFDVAEA 298 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T VDIN+G ++++DT FNTN+EA IARQLRLR+LGG+++IDFIDM H+R Sbjct: 299 LTAVDINSGRSTKGQDIEDTAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMGQPKHQRE 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L AL DR + + S GL+EM+R+R S+E + CP C G+G +++VE+ Sbjct: 359 VENRLRDALKMDRARVQLGRISRFGLLEMSRQRLSASLEESAQHVCPRCMGQGHIRSVES 418 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR ++ + R + V L E+ L E+E +V V Sbjct: 419 LALSIMRLMIDESMKDQTGRVVAQVPVDVGTYLLNEKRLQLHEIEQNHQVEVLVIPNINL 478 Query: 480 NQEQFDVVMM 489 F + + Sbjct: 479 ETPHFKIERV 488 >UniRef50_Q1K0W4 Ribonuclease, Rne/Rng family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0W4_DESAC Length = 952 Score = 565 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 163/492 (33%), Positives = 274/492 (55%), Gaps = 3/492 (0%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L+N T P E RVA ++ GIL E+ IE + GNIYKG V RV G+QAAF+D Sbjct: 18 MSKKMLINATLPEEDRVAIVEDGILTELDIESAGHQQTKGNIYKGEVIRVEQGLQAAFID 77 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G + FL +I P +E + I+E++++GQ ++VQVVK+ GTKGA L Sbjct: 78 YGAQRPGFLQIGEIHPSLYPKRDDEGQSNRRPPITEILKRGQQILVQVVKEERGTKGAAL 137 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 TT+++LP RY+V +P +S G+S++I+++ R+ +K ++ + G+IIRTAA Sbjct: 138 TTEVSLPGRYMVLIPQSSSRGISRKIDNDHVRKEIKNTLSSLELPDNMGYIIRTAAIDQP 197 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 EL D YL + ++ ++ + +Y E L R +RD+ E+D + +D R Sbjct: 198 PEELKRDFDYLLNTYNSIVSHSEKAKAPALIYQESNLVLRSIRDYFSPEIDEVLIDDREV 257 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 ++ +F +PE ++ + R+PIF + +E +I V L SGG +++DQTE Sbjct: 258 FQEARDFFKAVMPEYMPLVKLHQERRPIFARYQIEEQISHLSSNTVNLPSGGSIVLDQTE 317 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ +D+N+G G ++++ T N+EA +ARQLRLR++GG+I+IDFIDM + R Sbjct: 318 ALVAIDVNSGKMGGEQDVEATAHRVNLEAAIEVARQLRLRDMGGLIVIDFIDMRQRRNAR 377 Query: 359 RVLHSLEQALSKDRVKTSVNGFS-ALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 V +L+ AL D+ + +V S GL+EM+R+R + ++ N CP C G G +++ Sbjct: 378 EVEKALKNALKIDKARVTVGRISHQFGLLEMSRQRIKANLGEGSYNMCPHCQGSGRIRSD 437 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 E+ ++R I + + A+ A L + L ++E ++++ +P Sbjct: 438 ESRSIALLRRIQAGTAKGHIEAVVCTAALDTANYLLNNKRRELYDLEQRYKLIIEIKGDP 497 Query: 478 LYNQEQFDVVMM 489 Y EQ D+ + Sbjct: 498 GYLPEQVDIEFV 509 >UniRef50_A4A8E4 Ribonuclease E n=5 Tax=unclassified Gammaproteobacteria RepID=A4A8E4_9GAMM Length = 1003 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 164/490 (33%), Positives = 267/490 (54%), Gaps = 6/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++L+N T E RVA +DG L ++ IE R NIY G+++RV P ++AAFVD G Sbjct: 2 KKMLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDFG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + I ++V++G L+VQV K+ G KGA LTT Sbjct: 62 AERHGFLSVKEIAREYFY--RNPKDVDGKFSIRDVVKEGTRLIVQVDKEERGNKGAALTT 119 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+LP RY+V MP G+S+RIE + +R L++ ++ + G IIRTA G Sbjct: 120 FISLPGRYMVLMPNNPRAGGISRRIEGD-DRAELREALSALDIPDGMGVIIRTAGVGRSA 178 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++W V + + ++ LY E + R +RD+ ++D++ +DS + Sbjct: 179 EELQWDLNYLLQLWEAVSKAGEENRSPVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAF 238 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + ++F S +P+ +++ Y P+F+ F +E++I+ A +R+V L SGG ++ID TEA Sbjct: 239 KQAMDFVSMVMPKYQQRIKLYEDNIPLFNRFQIESQIETAFQREVRLPSGGSIVIDPTEA 298 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ N++ T TN+EA +ARQLRLR++GG+I+IDFIDM ++R Sbjct: 299 LVSIDINSARATKGANIEATALQTNLEAADEVARQLRLRDMGGLIVIDFIDMLAAKNQRA 358 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + + AL+ DR + V S GL+EM+R+R R S+ CP C G+G+++ ++ Sbjct: 359 VENRMRDALAIDRARVQVGRISRFGLLEMSRQRLRPSLGETSAIICPRCTGQGSIRDTKS 418 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + I+R + + VA L E+ +L+EVE +V V P Sbjct: 419 LSLSILRLLEEEAIKDRTAEVRAIVPVDVAAYLLNEKRVALSEVESLTRVRVLVIPNPNL 478 Query: 480 NQEQFDVVMM 489 F+V + Sbjct: 479 ETPHFEVTRL 488 >UniRef50_A5WCP3 RNAse E n=3 Tax=Proteobacteria RepID=A5WCP3_PSYWF Length = 1368 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 156/489 (31%), Positives = 254/489 (51%), Gaps = 10/489 (2%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 2 KRILINATHNEEVRVALCKGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I E +I +L+++G +L+VQV K+ G KGA L+T Sbjct: 62 SKRQGFLPVREIASEYLSGNPRE------ENIRKLIKEGDELIVQVEKEERGNKGAALST 115 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 ++L RYLV MP G+S++I + RE +K+++ + I+RTA G + Sbjct: 116 YVSLAGRYLVLMPNNPKGGGISRQISGK-LREDMKRMLGNLDLPKGMSVIVRTAGIGKTQ 174 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 +L D +L +W + ++ K+ + ++ E + R +RD+ ++ I +D+ + Sbjct: 175 EDLQHDLNHLLNIWNAIQDQNKKYASPRLVHQEAGVVTRAVRDYLRDDITEIWIDNEEAF 234 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 F +P KL YT +P+F F+VE +I+ A +R+V L SGG ++IDQTEA Sbjct: 235 IEAETFIKAVMPTQIDKLRKYTDFEPMFSSFNVERQIETAYQREVRLPSGGSIVIDQTEA 294 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++ +T ++TN+EA IARQLRLR++GG+I+IDFIDMN+ H++ Sbjct: 295 LVSIDINSAKSTKGADVAETAYHTNLEAADEIARQLRLRDMGGLIVIDFIDMNDSKHQKE 354 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V L +A DR + S GL+EM+R+R R S+E CP CHG G ++ + + Sbjct: 355 VEKRLVEATKYDRARVQFGEISRFGLMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRS 414 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR+I + +A L E+ SL +E G ++ + Sbjct: 415 LSLSIMRQIEQTALKERHGEVQAEVPTDIAAFLLNEKRESLVYLEQDSGTRITILPHAHL 474 Query: 480 NQEQFDVVM 488 F++ Sbjct: 475 ESPNFNIHF 483 >UniRef50_Q2YA54 Ribonuclease E n=7 Tax=Betaproteobacteria RepID=Q2YA54_NITMU Length = 977 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 160/490 (32%), Positives = 254/490 (51%), Gaps = 8/490 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L N T P E RVA +DG L ++ IE + NIYK ++R+ P ++AAFV+ G Sbjct: 2 KRMLFNATQPEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ FL +I + + + + + + +GQ+L+VQV KD GTKGA LTT Sbjct: 62 GERHGFLPFKEISRSYLKESPDPGRV----RVQDALHEGQELIVQVDKDERGTKGAALTT 117 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP GVS+RIE E +R L+ V++ + I RTA G E Sbjct: 118 YISLAGRYLVLMPNNPRGGGVSRRIEGE-DRAELRDVMSHLNIPQGMSIIARTAGIGRTE 176 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YL ++W + + K + +Y E +L R +RD+ + E+ I +D+ Y Sbjct: 177 EELQWDLNYLLQLWRAIEDASKGQSGAFLIYQESSLVIRAIRDYFNQEIGEILIDTESIY 236 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E +F +P ++++ Y P+F F +E++I+ A R+V L SGG ++ID TEA Sbjct: 237 EQACQFMGHVMPGNVARVKLYRDDVPLFSRFQIEHQIETAYSRQVTLPSGGAIVIDHTEA 296 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + +VD+N+ +++ T TN+EA IARQLRLR+LGG+++IDFIDM ++R Sbjct: 297 LVSVDVNSARATRGSDIEQTALATNLEAADEIARQLRLRDLGGLVVIDFIDMEVSRNQRE 356 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L AL DR + + S GL+E++R+R R S+ CP CHG G ++ ++ Sbjct: 357 VENRLHDALRYDRARVQMGKISRFGLLELSRQRLRPSLGESSYISCPRCHGTGHIRGTDS 416 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 I+R I ++ VA L E+ + +E + V + Sbjct: 417 SALHILRIIQEEAMKENTAVLHAQVPVDVATYLLNEKRAEIHAIEARLKVSVVLIPNIHL 476 Query: 480 NQEQFDVVMM 489 + + + Sbjct: 477 ETPNYSITRL 486 >UniRef50_C5AD76 Ribonuclease E n=21 Tax=Proteobacteria RepID=C5AD76_BURGB Length = 1125 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 155/492 (31%), Positives = 249/492 (50%), Gaps = 10/492 (2%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L N T E RVA +DG L +I IE R GNIYKG ++R+ P ++A FV+ G Sbjct: 2 KRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL ++ + I + +R+GQ+L+VQV K+ G KGA LTT Sbjct: 62 EDRHGFLPFKEVARQYF----RDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTT 117 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP GVS+RIE + ER+ L++ +A+ E I RTA G Sbjct: 118 FISLAGRYLVLMPNNPRGGGVSRRIEGD-ERQELRETMAQLEIPEGMSMIARTAGIGRSA 176 Query: 180 AELASDAAYLKRVWTKVMERKKRPQT--RYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 EL D YL ++W + K +Y E +L R +RD+ ++ I +D+ Sbjct: 177 EELQWDLNYLLQLWHAIEAASKSGHAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTE 236 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 ++ F +P+ K++ Y P+F F +E++I+ A R V L SGG ++ID T Sbjct: 237 IHDQARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHT 296 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+ +D+N+ ++++T TN+EA +ARQLRLR+LGG+I+IDFIDM + + Sbjct: 297 EALVAIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQ 356 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V L+ AL DR + + S GL+E++R+R R ++ CP C+G G ++ Sbjct: 357 REVEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDT 416 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 E+ +++R I ++ V L E+ + ++E + + Sbjct: 417 ESSALQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNK 476 Query: 478 LYNQEQFDVVMM 489 + + + + Sbjct: 477 HLDTPHYKLERL 488 >UniRef50_Q0ABM4 Ribonuclease G n=2 Tax=Proteobacteria RepID=Q0ABM4_ALHEH Length = 492 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 274/492 (55%), Positives = 365/492 (74%), Gaps = 3/492 (0%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E+L+NVTP ETRVA ++ G+LQE+H+ER RRG+VGN+YKGRV RVLPGMQAAF++ Sbjct: 1 MAQEILINVTPRETRVALVENGVLQELHLERARRRGLVGNLYKGRVVRVLPGMQAAFIEA 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVR-DISELVRQGQDLMVQVVKDPLGTKGARL 119 GL++ AFLHASDI G+E I EL+ +GQ+++VQV+KDP+G+KGARL Sbjct: 61 GLERTAFLHASDIARAEPAPVGDEPNGRPPPLPIDELLTEGQEVVVQVLKDPIGSKGARL 120 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE--QGGFIIRTAAEGV 177 TT IT+PSRYLV PG+ +GVS R+E +ERERL+ + + G I+RTAAE V Sbjct: 121 TTHITIPSRYLVLAPGSRALGVSARVEDPAERERLRAIGESLLADRGDMGIIVRTAAEQV 180 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 E L +D +L R+W + ER +++ +L L R +RD A +E++R+RVDSR Sbjct: 181 AEEALRADFDFLLRLWQSISERAAHASAGQRVHEDLPLTVRAMRDLAGSEVERVRVDSRE 240 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 Y ++ F ++PEM ++E+Y G +P+FDL+++E+EI RAL R+V LKSGG+L+IDQT Sbjct: 241 NYLNVVSFCRRFLPEMAPRVEYYPGERPLFDLYNIEDEILRALNRRVPLKSGGHLVIDQT 300 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EAMTTVD+NTGA+VGHR L++TIF TN+EA QAIARQLRLRNLGGIII+DFIDM E+H+ Sbjct: 301 EAMTTVDVNTGAYVGHRTLEETIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMVEEEHK 360 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R+VL +LE+AL KD KT ++G SALGLVEMTRKRTRES+EH LC CPTC GRG+VK+ Sbjct: 361 RQVLRALEKALQKDHAKTQISGVSALGLVEMTRKRTRESLEHQLCESCPTCGGRGSVKSA 420 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 ETV YEI REI+R ++S R +V A+ V + L +ES SLA++E F+G+ +++Q E Sbjct: 421 ETVSYEIFREILREARQFESRRLVVLAATEVVDLLLEDESTSLAQLEEFIGRPIELQAES 480 Query: 478 LYNQEQFDVVMM 489 LY QEQFDVV+M Sbjct: 481 LYTQEQFDVVLM 492 >UniRef50_B4RR31 Rne n=31 Tax=Neisseriaceae RepID=B4RR31_NEIG2 Length = 919 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 164/490 (33%), Positives = 259/490 (52%), Gaps = 9/490 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L N T E RVA +DG L ++ IE + GNIYKG ++R+ P ++A FVD G Sbjct: 2 KRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 D+ FL ++ + + I +++++G +++VQV KD G KGA LTT Sbjct: 62 TDRHGFLPFKEVSRSYFLGYEGGRAR-----IQDVLKEGMEVIVQVEKDERGNKGAALTT 116 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP GVS+RIE E ER+ LK +A+ I RTA G Sbjct: 117 FISLAGRYLVLMPNNPRGGGVSRRIEGE-ERQELKAAMAQLDIPNGMSIIARTAGIGRSA 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D YLK++W + E K Y L+ E +L R +RD+ ++ I VD++ Y Sbjct: 176 EELEWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVY 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + EF S +P +L+ Y P+F F +E++I+ A R V L SGG ++ID TEA Sbjct: 236 DQVAEFMSYVMPGNAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++D+N+ +++DT F TN+EA + +ARQ+RLR+LGG+++IDFIDM N H+R Sbjct: 296 LVSIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRD 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V + L AL KDR + + S GL+E++R+R + ++ CP C G G ++ +E+ Sbjct: 356 VENVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIES 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 ++R + ++ VA L E+ L +E + V + Sbjct: 416 TALHVLRMVQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLDVNVVLIPNIHL 475 Query: 480 NQEQFDVVMM 489 +++ + Sbjct: 476 ENPHYEINRI 485 >UniRef50_C8N8A8 Ribonuclease G and E n=19 Tax=Proteobacteria RepID=C8N8A8_9GAMM Length = 1302 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 152/488 (31%), Positives = 263/488 (53%), Gaps = 6/488 (1%) Query: 5 LLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G Sbjct: 1 MLINATQQEELRVALVDGQQLYDLDIETLYSAQKKANIYKGKITRIEPSLEAAFVDYGAQ 60 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I G +++ GQ+++VQ+ K+ G KGA LTT I Sbjct: 61 RHGFLPFKEIGKEYLT--GSTTAHEGQLAFKDMIEVGQEVLVQIDKEERGNKGAALTTYI 118 Query: 124 TLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAE 181 +L R+LV MP GVS+RI+ + +R+ L++ + E G I+RTA G + E Sbjct: 119 SLAGRFLVLMPNNPRAGGVSRRIQGD-DRKELRETLDMLDVPENMGIIVRTAGVGRAQEE 177 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D +L ++W + E ++ Q + +Y E + R LRD+ ++ +I +D Y+ Sbjct: 178 LQWDLDFLLQLWEAISEEYRKAQPQRLIYQESNIIVRALRDYLRPDIGQILIDDERVYQQ 237 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 +F + +P +KL+ Y P+F + +E +I+ A +R V+L SGG L+ID TEA+ Sbjct: 238 ASDFMTLVMPNNLNKLKLYQDNIPLFTRYQIEGQIESAYQRNVQLPSGGELVIDYTEALV 297 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 ++DIN+ ++++T + TN+EA IARQ+RLR+LGG+I+IDFIDM+ +R+ V Sbjct: 298 SIDINSSKATKGGDIEETAYQTNLEAADEIARQMRLRDLGGLIVIDFIDMSVSRNRKDVE 357 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 + L +A DR + + S GL+E++R+R R S++ CP C G+G+++ ++++ Sbjct: 358 NRLYEATKIDRARVQIGRISRFGLLELSRQRLRPSMDESSHRVCPRCKGQGSIRGIQSMA 417 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQ 481 ++R I + R ++A L E+ + ++E +V + + Sbjct: 418 LSLLRLIEEEAMKERTRRITGELPVSIATYLLNEKRAVIRQIEQRNKVEVVLVPNADLHT 477 Query: 482 EQFDVVMM 489 + + + Sbjct: 478 PDYYIERL 485 >UniRef50_C9R616 Ribonuclease E (RNase E) n=2 Tax=Gammaproteobacteria RepID=C9R616_AGGAD Length = 960 Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 156/488 (31%), Positives = 254/488 (52%), Gaps = 7/488 (1%) Query: 5 LLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N T E RVA +DG L ++ IE NIYKG+++RV P ++AAFVD G + Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL +I Q + +I +++ +GQ+++VQV K+ G KGA LTT + Sbjct: 61 RHGFLPLKEIAREYFPSGYVYQGR---PNIRDIISEGQEVIVQVNKEERGNKGAALTTFV 117 Query: 124 TLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAE 181 +L YLV MP G+S+RIE + ER LK ++ E G I+RTA G E Sbjct: 118 SLAGSYLVIMPNNPRAGGISRRIEGD-ERLELKDALSSLDVPEGVGLIVRTAGVGKSPEE 176 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D L W + + + + ++ E + R +RD+ ++ I +DS YE Sbjct: 177 LQWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEK 236 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 P+ ++++ Y G P+F + +E++I+ A +R+V L SGG ++ID TEA+T Sbjct: 237 AKAHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALT 296 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +DIN+ ++++T NTN+EA IARQLRLR+LGG+I+IDFIDM H+R V Sbjct: 297 AIDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE 356 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 + + A+ +DR + ++ S GL+EM+R+R S+ + CP C G G ++ E++ Sbjct: 357 NRVRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLS 416 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQ 481 I+R + ++ + +A L E+ ++ +E + V Sbjct: 417 LSILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHTVDILVVPNEAMET 476 Query: 482 EQFDVVMM 489 F V + Sbjct: 477 PHFSVFRV 484 >UniRef50_Q492Q0 Ribonuclease E n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=Q492Q0_BLOPB Length = 866 Score = 550 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 153/492 (31%), Positives = 259/492 (52%), Gaps = 9/492 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG++ R+ P ++A FVD G Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 +++ FL +I + +F +I E++ +GQ+L+VQ+ K+ G KGA LTT Sbjct: 62 VERHGFLPIKEISHEYFLSSPSSYNKF---NIKEILCEGQELIVQIDKEERGNKGAALTT 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP G+S+RIE +R LK++++ E IIRTA G Sbjct: 119 FISLAGSYLVLMPNNPKSSGISRRIEGN-DRIGLKEILSTLELPEGMSLIIRTAGLGKSI 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D + W + + + ++ + + R RD+ ++ I +D+ Sbjct: 178 EALEWDLTSRLQHWKTIKNTAAKHLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIM 237 Query: 240 EALLEFTSEY-IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 E + P+ T K++ Y G P+F + +E++I+ A +R+V L SGG ++ID TE Sbjct: 238 HLAKEHITSLGRPDFTKKIKFYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTE 297 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +DIN+ +++DT F+TN+EAT IARQLRLR++GG+I+IDFIDM H+R Sbjct: 298 ALTAIDINSARSTKGTDIEDTAFHTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQR 357 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 + +SL+ A+ +DR + + S GL+E++R+R S+ + CP C G G+++ E Sbjct: 358 EIENSLKIAVHQDRARIQIGHISKFGLLELSRQRLSTSLGESSHHICPRCSGTGSIRDNE 417 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFV-GKQVKVQIEP 477 ++ I+R I ++ A+A L E+ +++++E G + + Sbjct: 418 SLSLSILRLIEEEALKDNTYEVHAIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYE 477 Query: 478 LYNQEQFDVVMM 489 +++ + Sbjct: 478 QMKTPNYEIRRI 489 >UniRef50_Q0F3G3 Ribonucleases G and E n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G3_9PROT Length = 727 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 153/486 (31%), Positives = 260/486 (53%), Gaps = 3/486 (0%) Query: 5 LLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N + E+RVA + G L E+ IE + NIYKG+V++V +QAAFV+ G Sbjct: 1 MLINASHDEESRVAIAEDGYLHELDIESAQKTLTKSNIYKGKVTKVEASLQAAFVEYGAA 60 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + FL S+I P ++ I +++ Q+L+VQVVK+ G KGA LTT I Sbjct: 61 RQGFLSLSEIHPDYWKDGVDKSTNPRNISIQDVLAPKQELLVQVVKEERGNKGAALTTQI 120 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAEL 182 +L RYLV P + G+S+++ E R +K+++++ E G IIRTA + L Sbjct: 121 SLAGRYLVLSPNTTRGGISRKLSDEERRS-MKEILSQLDVPENMGLIIRTAGKDQTLEAL 179 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D YL+R+W ++ + + +Y E LA R +RD ++D I VD+ Y Sbjct: 180 QRDYQYLRRLWDEIRIKSETTPPPALIYLEGDLATRAIRDHFSDDVDEIWVDNHEIYTHT 239 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 F +P ++ Y G+ P+F + +E++ + ER++ L++GG +++D TEA+T+ Sbjct: 240 KAFVHAVLPGKEKLVKLYRGKIPLFRKYGIESQCEEMHEREIRLRTGGSIVLDPTEALTS 299 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+ +++DDT N+EA + IARQLR+R++GG+I+IDFIDM + H ++V Sbjct: 300 IDVNSARATKGKHIDDTALAINLEAAEEIARQLRIRDIGGLIVIDFIDMASRKHGQQVED 359 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L +A D+ + S GL+EM+R+R S+ CP C GRG ++TV+++ Sbjct: 360 MLRKACKGDKARIQFARISRFGLLEMSRQRLHPSVRESTTEPCPRCQGRGFIRTVDSMAL 419 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 +++ + A +V E L + ++A +E Q+ +QI P + Sbjct: 420 QMLTRMEDWAEAGKKPTLVVQVPSDTGEYLMNNKRDNIARIEETYEIQITLQIRPDLDIP 479 Query: 483 QFDVVM 488 + + Sbjct: 480 HYRIER 485 >UniRef50_Q2RSE6 RNAse E n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RSE6_RHORT Length = 889 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 162/534 (30%), Positives = 262/534 (49%), Gaps = 45/534 (8%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT +L++ P ETRV +DG L E +E ++ + GNIY +V RV P +QAAFV+ Sbjct: 1 MTKRMLIDANHPEETRVVVLDGTRLDEFDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQF------------------------------- 88 G ++ FL ++I P + ++++ Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREKLIAEEALEAAADDDDEADSVETLGGDEAEDSA 120 Query: 89 ----------TVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGA-S 137 I E++++ Q ++VQVVK+ G KGA LTT ++L RY VFMP Sbjct: 121 PAPRAKSRVSRSYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVFMPNTTR 180 Query: 138 HVGVSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKV 196 GVS++I S ++R+RLK ++ E + I+RTA AE+ D YL R W + Sbjct: 181 GGGVSRKITSATDRKRLKSIMGELIGPKGSAVILRTAGSERSRAEIRRDHDYLLRTWDSI 240 Query: 197 MERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSK 256 + + ++ E +L +R +RD +++ I V+ Y +F P K Sbjct: 241 RQTTLASRAPCLIHEEGSLIKRAIRDIYSRDIEEILVEGDAGYRTAKDFMKMLTPSHAKK 300 Query: 257 LEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y P+F + VE+++ +L+SGGYL+I+QTEA+ +D+N+G RN Sbjct: 301 VQPYKDEIMPLFHRYQVESQMDAMHSPIAQLRSGGYLVINQTEALVAIDVNSGRSTRERN 360 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 +++T + TN+EA IARQLRLR+L G+I+IDFIDM++ V ++ AL DR + Sbjct: 361 IEETAYKTNLEAADEIARQLRLRDLSGLIVIDFIDMDDPRSNANVERRVKDALRNDRARI 420 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 + S GL+EM+R+R R S+ CP CHG G++++VE+ I+R I Sbjct: 421 QLGRISHFGLLEMSRQRLRPSLMETSFQPCPHCHGSGSLRSVESTAIHILRIIEEEGVRR 480 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM 489 S V A+A + + LA +E QV + + + + + Sbjct: 481 RSSEVTVTVPTAIALYILNNKRTVLAAIEARYDFQVFLLGDDTLIVPDYRMDRV 534 >UniRef50_C8W5Q7 Ribonuclease, Rne/Rng family n=11 Tax=Bacteria RepID=C8W5Q7_DESAS Length = 564 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 220/489 (44%), Positives = 311/489 (63%), Gaps = 2/489 (0%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E++VNV ETRVA ++ + EI+IER + + GNI+KG+V VLPGMQAAFVDI Sbjct: 1 MLKEIVVNVGEEETRVAVLEDKVTVEIYIERAINQRLEGNIFKGKVENVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GLDK AFL+ D +P +I ++++QGQDL+VQ+VK+P+GTKG R+T Sbjct: 61 GLDKNAFLYVEDALPSRNPEENRNSLDLCA-NIGDVLKQGQDLVVQIVKEPIGTKGPRIT 119 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T ITLP RYLV MP ++G+S+RI E ERERLK++ A G I+RT AEGV E Sbjct: 120 THITLPGRYLVLMPTVDYIGISRRIADEQERERLKELAARVKPRDMGLIVRTVAEGVSEE 179 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 ELA D L ++W K++ R L+ +L L R+LRD ++DR+ +DSR YE Sbjct: 180 ELAQDVNVLAKLWRKIINRSNHGPVPNLLHRDLELVHRILRDIFTEDVDRLIIDSRYEYE 239 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +LE P++ K+ R+ +F+ + +E E+++A++RKV LK GGYL+IDQ EA+ Sbjct: 240 RVLELLDIIDPQLKIKVSV-DERENLFEEYGIEMELEKAVKRKVWLKCGGYLVIDQAEAL 298 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG FVG NL+DT+ TN++A IARQLRLRN+GGIII+DFIDM ++HR++V Sbjct: 299 TAIDVNTGKFVGSTNLEDTVLRTNLDAALEIARQLRLRNIGGIIIVDFIDMLEDEHRQKV 358 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L LE+ + KD+ KT++ G + LGLVEMTRK+ R S+ +L CP C GRG V + ETV Sbjct: 359 LEVLEKEIKKDKTKTNLLGITQLGLVEMTRKKVRPSLSEMLQKPCPYCEGRGKVLSEETV 418 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 EI ++ +D LV A+P VA L G +L ++E GK + ++ Y+ Sbjct: 419 GIYFKNEIYQLSRQTPADTILVEANPLVAARLIGSGGSNLRDLENKTGKNLYIRGSANYH 478 Query: 481 QEQFDVVMM 489 E + + Sbjct: 479 IESVKIRPL 487 >UniRef50_A8L1W0 Ribonuclease, Rne/Rng family n=25 Tax=Actinobacteridae RepID=A8L1W0_FRASN Length = 1427 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 158/420 (37%), Positives = 243/420 (57%), Gaps = 8/420 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V T++A ++ G+L E + R + GN+Y GRV VL M+AAFVDIG Sbjct: 777 ERRMIVRHNGDRTQIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDIG 836 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G + I ++++ GQ ++VQV KDP+G KGARLT+ Sbjct: 837 KGRNAVLYAGEVNYDASGLDGRPR------KIEQVLKSGQSVLVQVSKDPIGHKGARLTS 890 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ++LP RYLV++P + G+S+++ +ER RLK ++ + E GG I+RTAAEG EAE Sbjct: 891 QVSLPGRYLVYVPDGQNAGISRKLPD-TERARLKSILKKITPENGGVIVRTAAEGASEAE 949 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D L W + + ++ LYGE L RV+RD + + + V Sbjct: 950 LERDIERLVAQWEDIQRKAQKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSHEAAT 1009 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + + P++ ++ Y G +F V+ ++ +AL+RKV L SGG L+ID+TEAMT Sbjct: 1010 VEGYVDTVAPDLRDRVRRYVGTGDVFAEHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMT 1069 Query: 302 TVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+NTG F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R V Sbjct: 1070 VIDVNTGKFTGKGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELV 1129 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L L + L +DR + V ++LGLV+MTRKR + + C C+GRG + +++ Sbjct: 1130 LRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCAHCNGRGVLVHLDSA 1189 >UniRef50_C6MTB8 Ribonuclease, Rne/Rng family n=1 Tax=Geobacter sp. M18 RepID=C6MTB8_9DELT Length = 937 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 178/493 (36%), Positives = 282/493 (57%), Gaps = 4/493 (0%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L+N E RVA ++ G L ++ +E GNIYKG V RV G+QAAFVD Sbjct: 1 MSKKMLINALHAEEARVAIVEDGRLVDLDVEIAGNEQTRGNIYKGVVVRVEQGLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGE--EQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGA 117 IGL K FL ++ P + E ++ I E++R+GQ+L+VQV K KG+ Sbjct: 61 IGLKKLGFLQMGELHPENWKWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGS 120 Query: 118 RLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEG 176 LTT +LP RY+V MPG+ G+S+++ESE ER++LK+++AE E G+IIRT A G Sbjct: 121 ALTTYASLPGRYMVLMPGSDSAGISRKVESEGERKKLKEIIAEMTIPEGYGYIIRTEAMG 180 Query: 177 VGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSR 236 EL D L ++ + E+ + +Y E AL R +RD+ A++D + VDS+ Sbjct: 181 RTRDELQKDLDNLIALYEGIREKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSK 240 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 ++ + + E P ++ + ++PIF + +E +I E+KV LKSGG + I+ Sbjct: 241 DVFKDVRDALKEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEP 300 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+ ++D+N+G G + ++DT F TN+EA + ARQLRLR+LGG+I+IDFIDM + H Sbjct: 301 TEALVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKH 360 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 V +L+ AL D+ + +V+ S GL+EM+R+R R+++ ECP C GRG VK+ Sbjct: 361 NSEVEKTLKSALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKS 420 Query: 417 VETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIE 476 VE + +R++ + VA L + H L+++E +V V+ + Sbjct: 421 VEAMALSFLRKVHAAAAKGTIGEVVGSLPLEVAYYLLNRKRHELSQIENDYDIEVTVKGK 480 Query: 477 PLYNQEQFDVVMM 489 P Y Q ++ ++ Sbjct: 481 PSYLLNQMELELI 493 >UniRef50_Q3A2X7 Ribonuclease E n=3 Tax=Bacteria RepID=Q3A2X7_PELCD Length = 926 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 165/490 (33%), Positives = 270/490 (55%), Gaps = 2/490 (0%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT ++L+N T P E RVA ++ GIL E+ IE + GNIYK V+RV G+QAAFVD Sbjct: 1 MTKKMLINATHPEEHRVAIVEDGILSELDIEISGKEQTKGNIYKAVVARVETGLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G ++ FL +I P A + I++++R+GQ+++VQ+VK+ GTKGA L Sbjct: 61 YGSERLGFLQIGEIHPAFFKEAEGRVEAGKRPRINDILRRGQEILVQIVKEERGTKGAAL 120 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 TT ++LP RY+V MP + G+S++IE ES+R++L++++ E+ G+I+RTA Sbjct: 121 TTYLSLPGRYMVLMPDSDTKGISRKIEKESDRKKLRELMDSLEIPEEMGYIVRTAGSTQK 180 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 +L D YL R++ K+ + +Y E L R +RD+ ++D + VD Sbjct: 181 RTDLKRDVDYLLRLFNKIQSLSDSTKAPSLIYKESNLVIRSIRDYFSDDMDEVLVDDAKV 240 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 +F E +PE ++ + R+PIF + +E++I+ + KV L SGG ++ID TE Sbjct: 241 STEARDFFQEVMPEYAELVKLHQERRPIFARYQIEDQIESIGKNKVMLPSGGSIVIDSTE 300 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ +D+N+G + ++ T + TN+EA ARQLRLR+LGG+++IDFIDM + H R Sbjct: 301 ALVAIDVNSGKMASEQGVEATAYKTNLEAAVETARQLRLRDLGGLVVIDFIDMRDRKHIR 360 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 + +L++A+ D+ + ++ S GL+EM+R+R + ++ CP C+G G +KT+E Sbjct: 361 DIEKTLKEAMKTDKARVTIGRISQFGLLEMSRQRIKSALAAASFEVCPHCNGSGKIKTIE 420 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPL 478 +R I R VA L + L +E + ++ P Sbjct: 421 AQSLGFLRRIHTGLAKGRIGRVEATVPLDVASYLLNNKRVELMAIEQKNDVSIHIKGCPD 480 Query: 479 YNQEQFDVVM 488 Y Q ++ Sbjct: 481 YMNGQGEIDF 490 >UniRef50_A8PMW2 Ribonuclease E (RNase E) n=1 Tax=Rickettsiella grylli RepID=A8PMW2_9COXI Length = 778 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 157/493 (31%), Positives = 270/493 (54%), Gaps = 13/493 (2%) Query: 2 TAELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 +L+N P E RVA ++ L ++ +E + NIYKG++SR+ ++AAF+ Sbjct: 5 KNRILINANQPGEIRVALLEANKLSDLDMEYTGQEQKKSNIYKGKISRIEQSLEAAFISY 64 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G ++ FL +I P + K + ++ I ++ GQ+LMVQ+ K+ G KGA LT Sbjct: 65 GAERHGFLPFKEIAPSYL-----KGKNYDLQSIKHSLKVGQELMVQIEKEERGDKGAALT 119 Query: 121 TDITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAEYCD-----EQGGFIIRTAA 174 T ITLP YLV MP G+S+RIE + ER ++ ++ + + + G I+RTA Sbjct: 120 TYITLPGSYLVLMPNNPGAGGISRRIEGD-ERREMQDLMHDLIEQTELSKNMGLILRTAG 178 Query: 175 EGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVD 234 G +EL +D L + W + + + ++ E L R +RD+ ++D I VD Sbjct: 179 VGREFSELKNDLNLLIQQWNAIQKAYHERPAPFLIFQEGDLITRSVRDYLRRDIDEIIVD 238 Query: 235 SRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLII 294 + +E + ++ + P+ S++ Y P+F FD+E ++ A +RK+EL SG ++I Sbjct: 239 DKKIHEKIKQYIEQIRPDFVSRISLYQNHIPLFMYFDIEEAVESAFKRKIELPSGATIVI 298 Query: 295 DQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 D+TEA+ ++DIN+G + ++++T TN+EA + IA QLR+R+LGG+I+IDFIDMN+E Sbjct: 299 DRTEALVSIDINSGRSTKNEDIEETAVATNLEAAKEIAHQLRVRDLGGLIVIDFIDMNSE 358 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 +++R+V + A+ KDR + + S GL+EM+R+R R S+ C C+G+GTV Sbjct: 359 ENQRKVENCFRLAVKKDRARIQIGRISTFGLLEMSRQRLRHSLGKANETLCSRCNGQGTV 418 Query: 415 KTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ 474 +T+E+ ++R I + + V +A L E+ +L +E + + Sbjct: 419 RTIESFALFLLRSIEKETLKKSTQHIRVELPVDIATYLFNEKRLALQHIEHQYNVNLLLI 478 Query: 475 IEPLYNQEQFDVV 487 P + Q+ + Sbjct: 479 PNPYWQSPQYKIT 491 >UniRef50_C6E0U6 Ribonuclease, Rne/Rng family n=8 Tax=Desulfuromonadales RepID=C6E0U6_GEOSM Length = 919 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 178/489 (36%), Positives = 278/489 (56%), Gaps = 4/489 (0%) Query: 5 LLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L+N P E RVA ++ G L ++ +E I GNIYKG V RV G+QAAFVDIGL Sbjct: 1 MLINALHPEEARVAIVEDGRLVDLDVEIAGNEQIRGNIYKGVVVRVEQGLQAAFVDIGLK 60 Query: 64 KAAFLHASDIMPHTECVAGE--EQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 K FL ++ P + E ++ I E++R+GQ+L+VQV K KG+ LTT Sbjct: 61 KLGFLQMGELHPENWKWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGSALTT 120 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEA 180 ++LP RY+V MPG+ G+S+++E + ER++LK+++AE E G+IIRT A G Sbjct: 121 YVSLPGRYMVLMPGSDSAGISRKVEGDGERKKLKEIIAEMTIPEGYGYIIRTEAMGRTRD 180 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 EL D L + + + + +Y E AL R +RD+ A++D + VDS+ Y Sbjct: 181 ELQKDLDNLIATYQGIRSKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKDVYN 240 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + E P ++ + ++PIF + +E +I E+KV LKSGG + I+ TEA+ Sbjct: 241 DVRDCLKEIDPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTEAL 300 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 ++D+N+G G + ++DT F TN+EA + ARQLRLR+LGG+I+IDFIDM + H V Sbjct: 301 VSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKHNAEV 360 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 +L+ AL D+ + +V+ S GL+EM+R+R R+++ ECP C GRG VK+VE + Sbjct: 361 EKTLKTALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKSVEAM 420 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 +R++ + VA L + H L+++E +V V+ +P Y Sbjct: 421 ALSFLRKVHAAAAKGTIGEVVGGLPLEVAYYLLNRKRHELSQIESDYDIEVTVKGKPSYL 480 Query: 481 QEQFDVVMM 489 Q D+ ++ Sbjct: 481 LNQMDLELI 489 >UniRef50_B0VED2 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=16 Tax=Acinetobacter RepID=B0VED2_ACIBY Length = 1110 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 168/489 (34%), Positives = 256/489 (52%), Gaps = 9/489 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA I G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I + +I EL+ +G +L+VQV K+ G KGA L+T Sbjct: 62 AGRQGFLSMREIANSYFQADPRQ-----TSNIRELITEGTELLVQVEKEERGNKGAALST 116 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S++I S RE LK+++A I+RTA G + Sbjct: 117 FISLAGRYLVLMPNNPKGGGISRQISG-SVREELKEILASLNVPRGMSVIVRTAGIGRTQ 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D +L +W ++ + ++ E + R +RD+ ++ I +DS Y Sbjct: 176 EELQLDLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAY 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 F +P KL+ YT +P+F F +E++IQ A ER+V+L SGG ++IDQTEA Sbjct: 236 NEAYNFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T NTN+EA + IARQLRLR++GG+++IDFIDM E ++R Sbjct: 296 LVSIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRM 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V L +A DR + S GL+EM+R+R R S+E CP CHG G V+ + + Sbjct: 356 VEAKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR++ + V +A L E+ HSL +E G +V V P Sbjct: 416 LSLSIMRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHL 475 Query: 480 NQEQFDVVM 488 +++ Sbjct: 476 ETPHYEIAY 484 >UniRef50_B8IYX2 Ribonuclease, Rne/Rng family n=10 Tax=Desulfovibrionales RepID=B8IYX2_DESDA Length = 1076 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 157/478 (32%), Positives = 259/478 (54%), Gaps = 3/478 (0%) Query: 3 AELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 + ++V P E VA + G L E +++ +R I GNIYKG + + +QAAFV G Sbjct: 599 RRMFISVLPGEQVEVALTEDGQLLEYYLDMLHQRKIKGNIYKGVIHNIDTNLQAAFVSYG 658 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 K FL +I P E K I ++++ GQ+++VQVVK+P G+KGA LTT Sbjct: 659 AGKNGFLQIDEIHPEYWLTHHEPAKGKKFPPIQKVLKAGQEVLVQVVKEPTGSKGAFLTT 718 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCD-EQGGFIIRTAAEGVGEA 180 ++L R+LV PG +GVS++++ E ER RL++++ + G I+RT + G + Sbjct: 719 WLSLAGRFLVLTPGQEQIGVSRKVDDEEERSRLREMMNGIDPGQGLGVIVRTVSAGTTKT 778 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L +D YLKRVW + ++ +Y E L++R +RD+ ++ I VD+ + Sbjct: 779 TLKNDLQYLKRVWRDIRKKATEVTAPSLIYQEPGLSERAVRDYLTDDVGEIWVDNEDVAQ 838 Query: 241 ALLEFTSEYIPEMTSKLEHYTG-RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 ++ E + P + + ++ R +++ F + ++ + R+V L SGG L+ DQTEA Sbjct: 839 SIRETVNLLFPRKSDLVRLHSDVRTSMWERFSLRRQLDQIYTREVLLPSGGRLVFDQTEA 898 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + VDIN+G G N + TN+EA + IAR L+LR++GG ++IDFI+M ++ H Sbjct: 899 LMAVDINSGKISGKGNFEAMAHKTNMEAAETIARHLKLRDIGGQVVIDFIEMRDKKHIIE 958 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V +L A+ DR + V SA GL+E+ R+RT S + CP C G G + +E Sbjct: 959 VEKTLRSAMKNDRARHDVGRMSAFGLLELVRQRTGSSALAITMEPCPACGGTGQRRNLEW 1018 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 + +RE+ R+ A ++ + S +A L + SL E+E GK +++ + P Sbjct: 1019 QALQALRELRRMLRAESKEKCVYGTSAELALYLLNHKRDSLREMEQDYGKCLEISVRP 1076 >UniRef50_C0VHW5 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHW5_9GAMM Length = 1143 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 166/489 (33%), Positives = 254/489 (51%), Gaps = 9/489 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA I G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 22 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 81 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I + +I EL+ +G +L+VQV K+ G KGA L+T Sbjct: 82 AQRQGFLSMREIANSYFKADPRQ-----TSNIRELITEGTELLVQVEKEERGNKGAALST 136 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S++I S RE LK+++A I+RTA G + Sbjct: 137 FISLAGRYLVLMPNNPKGGGISRQISG-SVREELKEILATLNIPRGMSVIVRTAGIGRTQ 195 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D +L +W ++ + ++ E + R +RD+ ++ I +DS Y Sbjct: 196 EELQLDLQHLLDLWAQIQSSASTGPSPMLVHQEAGVVTRAIRDYLRDDVGEILIDSEQAY 255 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 F +P KL+ YT +P+F F +E++IQ A ER+V+L SGG ++IDQTEA Sbjct: 256 NEAYNFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEA 315 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T NTN+EA + IARQLRLR++GG+++IDFIDM + ++R Sbjct: 316 LVSIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRM 375 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V L +A DR + S GL+EM+R+R R S+E CP CHG G V+ + + Sbjct: 376 VEAKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 435 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR++ + V +A L E+ HSL +E +V V P Sbjct: 436 LSLSIMRKVEEIALRERQGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSNVRVTVLPHPHL 495 Query: 480 NQEQFDVVM 488 + + Sbjct: 496 ETPHYQIQY 504 >UniRef50_B3T2A0 Putative S1 RNA-binding domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A0_9ZZZZ Length = 776 Score = 537 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 151/489 (30%), Positives = 252/489 (51%), Gaps = 5/489 (1%) Query: 3 AELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE ++R NIYK ++SR+ P + A FVD G Sbjct: 23 KRMLINATQEEELRVAMVDGQKLYDLDIEIKSREQKKNNIYKAKISRIEPSLDAIFVDFG 82 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL ++ ++ DI +L+ +GQD++VQV K+ GTKGA LTT Sbjct: 83 SARNGFLPFREVSREYYLSEPIPGEKL---DIKKLLEEGQDIVVQVSKEERGTKGAALTT 139 Query: 122 DITLPSRYLVFMPGA-SHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I+L R++V MP GVS++I + + L + ++ G IIRTA G + Sbjct: 140 FISLAGRFIVLMPNKAKAGGVSRKIMGQDREQILDSLSNLGVPKEAGLIIRTAGLGRSDI 199 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 EL D +L +W + + + ++ E L R +RD + E+ I VD T++ Sbjct: 200 ELEWDLKHLLGIWNSIKKMAVNVEAPALIFKEDNLIVRAMRDHLNDEISEIIVDDENTFK 259 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 ++ + P KL +Y P+F F +E++I+ A KV L SGG ++ID TEA+ Sbjct: 260 DAKKYLKQVTPNNLKKLLYYKETTPLFTKFQIEHQIESAYSNKVILPSGGSVVIDYTEAL 319 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 ++DIN+G ++ T TN+EA I RQ RLR+LGG+++IDFIDM ++++V Sbjct: 320 VSIDINSGKSTKQSGIESTALKTNLEAVDEITRQCRLRDLGGLLVIDFIDMRQHRNQKQV 379 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 ++L+ A+ DR K S+ S GL+EM+R+R R S+ C C G G +++ E++ Sbjct: 380 ENALKNAVKSDRAKISLGHISKFGLLEMSRQRLRPSLGDSAYRICENCSGMGRIRSTESL 439 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 ++R + ++ + A L E+ + ++E + + +P + Sbjct: 440 ALAVLRLVEEEARKENTASVIADIPSDAATYLLNEKRQWIKDIEQRESVHIILIADPELS 499 Query: 481 QEQFDVVMM 489 F + + Sbjct: 500 SVNFSIKRL 508 >UniRef50_Q1PY04 Strongly similar to ribonuclease E (RNase E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PY04_9BACT Length = 509 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 183/492 (37%), Positives = 286/492 (58%), Gaps = 5/492 (1%) Query: 2 TAELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 +L+N P E R+A ++ IL+E++IER +R I GNIYKGRV + P ++AAFVDI Sbjct: 8 KTRMLINAIEPEECRIAILENNILEELYIERSSREQIAGNIYKGRVVNIEPNLEAAFVDI 67 Query: 61 GLDKAAFLHASDIMPHTECV---AGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGA 117 GL K FLHASD++ +E + I ++++QG++++VQV K+ LGTKG Sbjct: 68 GLKKNGFLHASDVLVPSEGKNQGEEADPPPVRHHRIRDVLQQGKEILVQVTKESLGTKGP 127 Query: 118 RLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCD-EQGGFIIRTAAEG 176 LTT I+LP RYLV MP GVS++I E ER+RLKK++ + GFI+RTA Sbjct: 128 SLTTYISLPGRYLVLMPEVKRYGVSKKITEEEERQRLKKILESLNPPKNIGFIVRTAGVQ 187 Query: 177 VGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSR 236 + EL D YL ++W + ++ K +Y E L RV+RD +++ I VDS Sbjct: 188 QTKRELQKDFHYLLKLWKNICKKSKEIDAPGVIYQESDLVIRVIRDIFSQDINEIIVDSE 247 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 ++ EF +P+ +L+ Y +P+F F +EN I+ RK+ L GG ++++Q Sbjct: 248 SVFKRTREFLRIIMPKYEKQLKFYNKEKPLFHNFGIENAIEEINSRKIPLLHGGSIVLEQ 307 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+ +D+N+G + G + ++T F TN+ A + IARQ+RLR+LGG+I+IDFIDM NE H Sbjct: 308 TEALVAIDVNSGKYKGKCDPEETAFRTNMIAAKEIARQIRLRDLGGVIVIDFIDMRNEKH 367 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 + V ++ +L + R +T + S G +E+TR+R R S+ VL EC C G G KT Sbjct: 368 IQAVEKAIADSLKRHRARTKMLKMSKFGTIEITRQRIRPSLRDVLFEECKFCCGTGYAKT 427 Query: 417 VETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIE 476 VE++C IMR++ H R + ++ V + L+ ++ +AE+E K++ + + Sbjct: 428 VESLCLNIMRDVKFALHLPQVVRIEITSNNDVVDYLQNQKRKQMAEIEDAYNKKIVIFTD 487 Query: 477 PLYNQEQFDVVM 488 + D+ Sbjct: 488 TANEYGKIDIRY 499 >UniRef50_Q6FEY0 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FEY0_ACIAD Length = 1138 Score = 536 bits (1381), Expect = e-151, Method: Composition-based stats. Identities = 167/489 (34%), Positives = 257/489 (52%), Gaps = 9/489 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA I G L + +E R NIYKG V+RV P ++A FV+ G Sbjct: 2 KRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + FL +I + +I EL+ +G +L+VQV K+ G KGA L+T Sbjct: 62 AQRQGFLSMREIASSYLHADPRQ-----TSNIRELITEGTELLVQVEKEERGNKGAALST 116 Query: 122 DITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L RYLV MP G+S++I S RE LK+++A I+RTA G + Sbjct: 117 FISLAGRYLVLMPNNPKGGGISRQISG-SVREELKEMLASLNVPRGMSVIVRTAGIGRSQ 175 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL D +L +W+++ + ++ E + R +RD+ ++ I +DS Y Sbjct: 176 EELQLDLQHLLDLWSQIQSTSNSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAY 235 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 F +P KL+ YT +P+F F +E++IQ A ER+V+L SGG ++IDQTEA Sbjct: 236 NEAYNFVKAVMPRQLDKLKTYTLNEPLFAHFAIESQIQTAYEREVKLPSGGSIVIDQTEA 295 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++DIN+ ++++T NTN+EA + IARQLRLR++GG+++IDFIDM + ++R Sbjct: 296 LVSIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRM 355 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V L +A DR + S GL+EM+R+R R S+E CP CHG G V+ + + Sbjct: 356 VEAKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + IMR++ + V +A L E+ HSL +E G +V V P Sbjct: 416 LSLSIMRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHL 475 Query: 480 NQEQFDVVM 488 +++ Sbjct: 476 ETPHYEIQY 484 >UniRef50_C8WCX7 Ribonuclease, Rne/Rng family n=3 Tax=Zymomonas mobilis RepID=C8WCX7_ZYMMN Length = 912 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 170/541 (31%), Positives = 262/541 (48%), Gaps = 56/541 (10%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++L++ ETRVA I G ++E E RR + GNIY +V+RV P +QAAFVD G Sbjct: 4 TKMLIDARHREETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFVDYG 63 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQ---------------------------------- 87 ++ FL S+I P + E+++ Sbjct: 64 GNRQGFLAFSEIHPDYYQIPREDREALLREEEEYSARHNKQQESEDDEEGEDLSDSEAIR 123 Query: 88 -------------------FTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSR 128 I +++R+ Q L+VQVVK+ G KGA LTT ++L R Sbjct: 124 NDANDDSLENLRNRRRHFGRHHYRIQDVIRRRQVLLVQVVKEERGNKGAALTTYLSLAGR 183 Query: 129 YLVFMPG-ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDA 186 Y V MP ++ G+S++I + ++R+RLK ++AE G I+RTA + E+ D Sbjct: 184 YCVLMPNTSNGGGISRKISNLADRKRLKSIMAELNLPSSMGCIVRTAGLQRTKTEIKRDF 243 Query: 187 AYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFT 246 YL R+W ++ E+ Q +YG+ L +R +RD E+D I V+ Y A F Sbjct: 244 DYLARLWDEIREKTLLSQAPALIYGDSDLVKRAIRDIYSREIDEILVEGDDGYRAARNFM 303 Query: 247 SEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDIN 306 +P K+ Y P+F F VE ++ + V+LKSGGYL+I+ TEA+ ++DIN Sbjct: 304 KLLMPSHVRKVRPYADPAPLFQRFGVEAQLNAMYQPIVQLKSGGYLVINPTEALVSIDIN 363 Query: 307 TGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQ 366 +G N++ T TN+EA IARQLRLR++ G+I+IDFIDM + + RRV +++ Sbjct: 364 SGRSTREHNIEQTATATNLEAAAEIARQLRLRDMAGLIVIDFIDMESSANIRRVEKAMKD 423 Query: 367 ALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMR 426 AL DR + V S+ GL+EM+R+R R + CP C G G + T + +R Sbjct: 424 ALKHDRARIQVGHISSFGLMEMSRQRLRTGMLEASTVPCPHCQGSGLMLTTPSAGLMALR 483 Query: 427 EIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 I + + V S A + ++ L +E G + + +PL Q V Sbjct: 484 MIEDEASRGNGSQIHVLTSLDSAIYVLNKKRKELGSIETLYGVTILIDGDPLRGNNQISV 543 Query: 487 V 487 Sbjct: 544 E 544 >UniRef50_A8ZW09 Ribonuclease, Rne/Rng family n=2 Tax=Desulfobacteraceae RepID=A8ZW09_DESOH Length = 499 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 164/490 (33%), Positives = 270/490 (55%), Gaps = 8/490 (1%) Query: 1 MTAELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT ++L+N E R+A + L E H+E +R NIYKG V+RV P +QA FVD Sbjct: 1 MTDKILINAVDTEECRIARVKDNRLCEFHLETTSRVTTKSNIYKGLVARVEPSLQAVFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G ++ FL DI + + I +L++ GQ+++VQVVKDP+ KGA L Sbjct: 61 YGEERHGFLQKHDIHTDYFQDSKVDG------SIRDLIKPGQEMLVQVVKDPIMHKGAAL 114 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 TT +++P R+ V MPG+ GVS++IE E ER+RLK++V+ E G I+RTAA+G Sbjct: 115 TTFLSIPGRFCVLMPGSVTKGVSKQIEDEEERKRLKEIVSGLRVPENFGVILRTAAKGAA 174 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + +A D +YL R+W + + + ++ E A R +RD+ A++ I +D Sbjct: 175 KTVIAKDLSYLMRLWKTIKKEGMNQKAPAAIHKERDFAVRAIRDYLTADIQEILIDEPAV 234 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 ++ + +F + P+ + Y G +PIF ++E++I+ E +V+L SGG +++ QTE Sbjct: 235 HQEVKDFVALVSPKHAKIVRLYQGAKPIFTKHELESQIESIFENRVQLPSGGSIVLTQTE 294 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ ++D+N+G ++++T TN+EA + IARQLRLR++GG+I+IDFIDM + Sbjct: 295 ALVSIDVNSGKSRQKHSIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMKPRKNNA 354 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V +L+ + +D+ +T V S GL+EM+R+R R+SIE C C GRG V E Sbjct: 355 AVERALKAHVKEDKARTDVGKISKFGLLEMSRQRLRQSIETSSMVTCGHCGGRGYVMATE 414 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPL 478 + ++R + + VA+ L ++ L E+E + + +P Sbjct: 415 KLGINVLRRLRLESLKHRGVAVTATVPAVVADYLLNKKRTELLELEARRDLAITITGDPA 474 Query: 479 YNQEQFDVVM 488 + + D+ Sbjct: 475 MHLGESDIRF 484 >UniRef50_B6BTS7 Ribonuclease E n=2 Tax=Betaproteobacteria RepID=B6BTS7_9PROT Length = 738 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 153/488 (31%), Positives = 268/488 (54%), Gaps = 8/488 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L N T E RVA I+ ++++ ER +R NIYKG ++RV P ++AAFV+ G Sbjct: 2 KRMLFNATQSEEIRVAIINDSTIEDLDYERSSREQRKSNIYKGTITRVEPSLEAAFVNYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 +D+ FL +I ++ + I++++ +GQ+++VQV K+ G KGA LTT Sbjct: 62 VDRHGFLPFKEISKEFYS----KKSRKKNLSIADVINEGQEVIVQVSKEERGNKGAALTT 117 Query: 122 DITLPSRYLVFMPGA-SHVGVSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVGE 179 ++L RY+V MP + G+S+RIE + ER K+V+++ + I RTA G Sbjct: 118 FLSLAGRYIVLMPNSSESGGISRRIEGD-ERSNFKEVLSQLKVKKGMSVIGRTAGIGASV 176 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 E+ D YL ++ + + + + +Y E L R +RD+ + +++ I +D++ Y Sbjct: 177 EEIQWDLDYLTQLSEAIQGASGQQEAPFLIYQESNLVIRAIRDYFNTDIEEILIDNQDIY 236 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + +F + +P+ +++ Y +F F++EN+I+ A R+V+L SGG ++ID TEA Sbjct: 237 DQASQFMNHVMPDYADRIQLYEESTALFSKFNIENQIESAFLREVQLPSGGVIVIDHTEA 296 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++D+N+ R++++T FNTN+EA + +A+QLRLR++GG+I++DFIDM N H+R Sbjct: 297 LVSIDVNSSRSTKGRDIENTAFNTNLEAAREVAKQLRLRDIGGLIVVDFIDMENPKHQRE 356 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 V L AL D+ + S GL+E++R+R R SI ECP C+G G ++ ++ Sbjct: 357 VEECLRDALKHDKARIQTGRISRFGLMELSRQRLRPSIGETSNGECPKCNGTGRIRDFQS 416 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 I+R I + + V VA L E+ + + E ++ + + Sbjct: 417 SALHIIRMIQEQSNKKQGQKISVQVPVDVATFLLNEKREIIIQTESEGNNKIFIIANKYF 476 Query: 480 NQEQFDVV 487 + QF + Sbjct: 477 DVPQFKIT 484 >UniRef50_B4RCR6 Ribonuclease, Rne/Rng family protein n=4 Tax=Alphaproteobacteria RepID=B4RCR6_PHEZH Length = 896 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 157/542 (28%), Positives = 256/542 (47%), Gaps = 55/542 (10%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ +L++ ETRV +DG ++E E + R+ + GNIY +V+RV P +QAAFV+ Sbjct: 1 MSKTMLIDAAHAEETRVVVVDGNRVEEFDFESQNRKQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTV----------------------------- 90 G ++ FL ++I P + +++ Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREALLREEAEEDDDDRHEPRARAPEDEDEVDLSGS 120 Query: 91 ----------------------RDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSR 128 I E++R+ Q ++VQVVK+ G KGA LTT ++L R Sbjct: 121 ADDEDDVVEEELARRRRRLMRRYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGR 180 Query: 129 YLVFMPG-ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDA 186 Y V MP A G+S++I + ++R+RLK +V G I+RTA +AE+ D Sbjct: 181 YGVLMPNTARGGGISRKITTATDRKRLKSIVQSLDVPAGMGLIVRTAGAKRTKAEIKRDY 240 Query: 187 AYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFT 246 YL R+W + E +Y E L +R +RD D ++D + V+ ++ +F Sbjct: 241 DYLLRLWENIRETTLHSIAPALIYEEEDLVKRAIRDLYDKDVDNVWVEGEAGFKEARDFM 300 Query: 247 SEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDIN 306 +P K++ Y P++ VE+ + + V L+SGGYL+I+QTEA+ +D+N Sbjct: 301 RMLMPSQAKKVQLYREPTPLYVKHKVEDHLSQIYSPVVPLRSGGYLVINQTEALVAIDVN 360 Query: 307 TGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQ 366 +G RN++ T TN+EA + ARQLRLR+L G+I+IDFIDM+ + R V L+ Sbjct: 361 SGRATRERNIEATALKTNMEAAEEAARQLRLRDLAGLIVIDFIDMDEAKNNRAVEKKLKD 420 Query: 367 ALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMR 426 L DR + + S GL+E++R+R R + + C C G G V++VE+ +R Sbjct: 421 CLKDDRARVQMGKISPFGLMEISRQRRRTGVLEGTTHVCEHCGGTGRVRSVESSALAALR 480 Query: 427 EIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + + + AV + E+ LA + G V V I+ + + Sbjct: 481 ALEIEALKGGGEA-TLTVPRAVGLYILNEKRGHLARLHHAFGLFVTVLIDDDMAHAEHGI 539 Query: 487 VM 488 Sbjct: 540 ER 541 >UniRef50_B8GWM7 Ribonuclease E n=6 Tax=Caulobacteraceae RepID=B8GWM7_CAUCN Length = 898 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 160/544 (29%), Positives = 260/544 (47%), Gaps = 57/544 (10%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L++ ETRV +DG ++E E + R+ + GNIY +V+RV P +QAAF++ Sbjct: 1 MSKKMLIDAAHAEETRVVVVDGTRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMPHTECVA-------------------------------------- 81 G ++ FL ++I P + Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSGDDEDDTPISRRASGGDDEDDVNGGD 120 Query: 82 ---------------GEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLP 126 +++ I E++R+ Q ++VQVVK+ G KGA LTT ++L Sbjct: 121 RAVDDDDDDVEEELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLA 180 Query: 127 SRYLVFMPG-ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELAS 184 RY V MP A G+S++I + ++R+RLK VV + G I+RTA +AE+ Sbjct: 181 GRYGVLMPNTARGGGISRKITAVTDRKRLKSVVQSLDVPQGMGLIVRTAGAKRTKAEIKR 240 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 D YL R+W + E +Y E L +R +RD D +LD I V+ Y+ + Sbjct: 241 DYEYLLRLWENIRENTLHSIAPALIYEEEDLVKRAIRDMYDKDLDGIWVEGDAGYKEARD 300 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 F +P K+ +Y P+F +E+ + + V L+SGGYL+I+QTEA+ +D Sbjct: 301 FMRMLMPSQAKKVFNYRDPTPLFVKNKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAID 360 Query: 305 INTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSL 364 +N+G RN++ T TN EA + ARQLRLR+L G+I+IDFIDM+ + R V L Sbjct: 361 VNSGKATRERNIEATALKTNCEAAEEAARQLRLRDLAGLIVIDFIDMDEAKNNRTVEKVL 420 Query: 365 EQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEI 424 + AL DR + + S GL+E++R+R R + + C C G G V++VE+ Sbjct: 421 KDALKDDRARIQMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCEGTGRVRSVESSALAA 480 Query: 425 MREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQF 484 +R + S ++ S +V + E+ L + G V V ++ + Sbjct: 481 LRAVEAEALKG-SGSVILKVSRSVGLYILNEKRDYLQRLLTTHGLFVSVVVDDSLHAGDQ 539 Query: 485 DVVM 488 ++ Sbjct: 540 EIER 543 >UniRef50_Q1NUM8 Ribonuclease E and G n=2 Tax=Deltaproteobacteria RepID=Q1NUM8_9DELT Length = 715 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 152/491 (30%), Positives = 272/491 (55%), Gaps = 5/491 (1%) Query: 4 ELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +LL+N P E R+A ++ ++ +IE +R I GNIYKGRV+ V +QAAFVDIGL Sbjct: 223 KLLINTDEPEECRLALLENSKVEGFYIESVSRARIKGNIYKGRVTSVEANLQAAFVDIGL 282 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K FL ++I P + + + I ++V++GQ+++V+VVK+ G KG LTT Sbjct: 283 EKNGFLSFNEIHPEYYQQEVDPETSWKNLKIQDMVKKGQEVLVEVVKEGSGNKGPSLTTY 342 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAE 181 ++LP R+LV MPG+ G+S++I+ E R +L+++V E G+I+RTA++ + + Sbjct: 343 LSLPGRFLVLMPGSDSAGISRKIDDEEHRNKLREMVEGLNIPEGVGYIVRTASQEITKTA 402 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L+ D +L +W+++ + + LY E + R LRD +++ I VD E Sbjct: 403 LSQDLRFLLNLWSEIRKGGQSLPAPSLLYKEQNIISRFLRDHYTSDIREILVDEEDAAEQ 462 Query: 242 LLEFTSEYIPEMTSK--LEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + F K ++ + G QPIF + VE +I+ + V L SGG ++I+ TEA Sbjct: 463 VRNFLQLLPASQRKKTTVKLHQGSQPIFHQYHVEKQIEEMFQPTVPLPSGGSIVINPTEA 522 Query: 300 MTTVDINTGA-FVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 + +D+N+G R+ +++IF N+EA + +ARQLR+R+LGG+I++DFIDM + H R Sbjct: 523 LVAIDVNSGRTSSKDRDFEESIFIANMEAAEELARQLRMRDLGGLIVVDFIDMRSAAHTR 582 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V + + + +D+ K + S GL++++R++ ++ CP C GRG +++VE Sbjct: 583 EVEKKVRECMKRDKAKVDFSKISKFGLMQISRQKMAAPLQTTSYKTCPYCEGRGLIRSVE 642 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPL 478 + +R+I + + + VA+ + ++ L E+E G ++ ++++ Sbjct: 643 NLALSHLRQIQTGMSRRRAKKVVCQLPMEVAQYILNKKREELLELEKEYGAEIVIEVDAA 702 Query: 479 YNQEQFDVVMM 489 + + Sbjct: 703 MLPADNRLDFI 713 >UniRef50_B0SXB4 Ribonuclease, Rne/Rng family n=2 Tax=Alphaproteobacteria RepID=B0SXB4_CAUSK Length = 905 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 157/534 (29%), Positives = 259/534 (48%), Gaps = 47/534 (8%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L++ ETRV +DG ++E E + R+ + GNIY +V+RV P +QAAF++ Sbjct: 1 MSKKMLIDAAHAEETRVVVVDGSRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMPHTECVA-------------------------------------- 81 G ++ FL ++I P + Sbjct: 61 YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSHDDEDDHDHGRDGDDGDAVDDEEDAV 120 Query: 82 -----GEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG- 135 +++ I E++R+ Q ++VQVVK+ G KGA LTT ++L RY V MP Sbjct: 121 EEELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGRYGVLMPNT 180 Query: 136 ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194 A G+S++I + ++R+RLK VV + G I+RTA +AE+ D YL R+W Sbjct: 181 ARGGGISRKITTITDRKRLKSVVQGLDVPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWE 240 Query: 195 KVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMT 254 + + +Y E L +R +RD D +L+ I V+ Y+ +F +P Sbjct: 241 NIRDNTLHSIAPALIYEEEDLVKRAIRDMYDKDLEGIWVEGEAGYKEARDFMRMLMPSQA 300 Query: 255 SKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR 314 K+ Y P+F +E+ + + V L+SGGYL+I+QTEA+ +D+N+G R Sbjct: 301 KKVFPYREAAPLFVKHKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAIDVNSGKATRER 360 Query: 315 NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVK 374 N++ T TN+EA + ARQLRLR+L G+I+IDFIDM+ + R V L+ +L DR + Sbjct: 361 NIEATALKTNMEAAEEAARQLRLRDLAGLIVIDFIDMDEGKNNRAVEKILKDSLKDDRAR 420 Query: 375 TSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHA 434 + S GL+E++R+R R + + C C G G V++VE+ +R + Sbjct: 421 IQMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCDGTGRVRSVESSALAALRAVEVEALK 480 Query: 435 YDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 + S V + E+ L ++ V V ++ +Q + D+ Sbjct: 481 G-GGAVTLKVSRPVGIYILNEKRAYLLRLQQTHALFVTVLVDDSLHQAEHDIDR 533 >UniRef50_A1HNZ2 Ribonuclease, Rne/Rng family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNZ2_9FIRM Length = 473 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 185/489 (37%), Positives = 290/489 (59%), Gaps = 20/489 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++ ++ P E+R+A ++ G L E +ER A +VGNIYKG+V VLPGMQAAF+DI Sbjct: 1 MGKTIIASIMPEESRMALVEDGELVEYVLERSATGHLVGNIYKGKVKNVLPGMQAAFIDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK A+L+ + + GQD+++Q+VKD G+KG R T Sbjct: 61 GGDKNAYLYVG-----------------HADANAGRLTVGQDILIQIVKDASGSKGPRTT 103 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T + LP RY V P + GVS+RIE ++ER+RL+++ + + G I+RTAA G E Sbjct: 104 TGLMLPGRYAVLAPYSDGTGVSRRIEDDAERKRLRQLADKVKPDGVGMIVRTAAAGCSET 163 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 ELA D YL +W + R KR LY ++ LA R++RD+ D ++ + +D+R Y Sbjct: 164 ELARDVEYLHNLWAALAARAKRSPAPALLYRDVDLAIRIVRDYLDDDVTEVVIDNRDAYG 223 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + P +K++ Y + IF + + ++ R L+R+VEL GG+L+IDQTEA+ Sbjct: 224 RVCDLLQHLAPAALAKVKFYQYPEDIFVHYGIAADLNRLLKREVELACGGFLVIDQTEAL 283 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG FVG +L DT+F N+EA IARQLRLR++GGIII+DFIDM +H++ V Sbjct: 284 TVIDVNTGRFVGDTSLSDTVFRVNMEAAAEIARQLRLRDIGGIIIVDFIDMAKAEHKQAV 343 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L L + + +DR ++ + G ++LGLVE+TRK+ R+ + ++ +ECP C GRG +++ ETV Sbjct: 344 LAFLAEKMRRDRTRSKILGLTSLGLVEITRKKGRQDLNSLMYSECPCCAGRGRIQSPETV 403 Query: 421 CYEIMREIVRVHHAYD-SDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 I R + + R ++ A P V E L + LA +E + +++ ++ P Sbjct: 404 AINIRRHLRWAAAQRKLASRLVIQAHPQVVEILSRQ--GELARLERELARKLTLESAPAM 461 Query: 480 NQEQFDVVM 488 + E + ++ Sbjct: 462 HPECYSILY 470 >UniRef50_C1A932 Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A932_GEMAT Length = 520 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 187/506 (36%), Positives = 298/506 (58%), Gaps = 18/506 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E+LVN TP ETRVA I+ G L E+ ++R R +VG++Y G+V VLPG+QAAFV+I Sbjct: 1 MKREILVNATPRETRVAIIEDGQLVELLVDRPDARRMVGDVYLGKVEAVLPGIQAAFVNI 60 Query: 61 GLDKAAFLHASDI-----------------MPHTECVAGEEQKQFTVRDISELVRQGQDL 103 G +K+AFLHA+D+ G + + VR I +L+++GQ++ Sbjct: 61 GTEKSAFLHAADVVVEDAQVSDDDDDDEDESGEESGGGGGRRGRREVRPIQDLLKRGQEI 120 Query: 104 MVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCD 163 +VQ+ K+P+ TKG R+T ++L R+LV+MP AS VGVS++I+ SER+RL+ +V E Sbjct: 121 LVQITKEPISTKGPRVTAQVSLAGRFLVYMPFASKVGVSRKIDERSERQRLRAMVGEMLP 180 Query: 164 EQ-GGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRD 222 + GG I+RT +E + + L W ++ + + + ++ E + + ++RD Sbjct: 181 DDAGGVIVRTVSEDATKETFERELQTLINNWKRIKRKTQFTRAPSLVHRETNVTRGLVRD 240 Query: 223 FADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALER 282 A+++R++VDS+ Y + E+ PE+ +++ Y P+FD +E EI+ +R Sbjct: 241 LFSAKVERVQVDSKQVYNEITEYLQGIAPELVERVKLYEENVPLFDKEGIETEIRDLFKR 300 Query: 283 KVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGG 342 + +L SGGYLI + TEA+ ++D+N+G + G R+ + TI TN EA + IARQLRLR++GG Sbjct: 301 RCDLPSGGYLIFEPTEALVSIDVNSGRYTGKRDPEKTILKTNTEAAREIARQLRLRDVGG 360 Query: 343 IIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLC 402 II+ DFIDM + +R +VLH L L +DR +T S LGLVEMTR+R R+S H + Sbjct: 361 IIVCDFIDMETQSNRDKVLHELRTHLGRDRARTKAFAVSDLGLVEMTRQRVRQSHWHSMT 420 Query: 403 NECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAE 462 CPTC G G V T ET+ R + R+ + ++ P VA + +E + Sbjct: 421 EGCPTCSGTGRVFTPETIVRRTERAVRRMAAEGRKEPVVLRLHPEVALHVLEQEHDFMKR 480 Query: 463 VEIFVGKQVKVQIEPLYNQEQFDVVM 488 +E G ++++ +PL ++ +VM Sbjct: 481 LEKMAGFTLELRDDPLLKPDEIKLVM 506 >UniRef50_D0LZK2 Ribonuclease, Rne/Rng family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZK2_HALO1 Length = 543 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 225/506 (44%), Positives = 321/506 (63%), Gaps = 23/506 (4%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL-- 62 L+VN ETRV + G L E +E + RGIVGNIY+GRVSRVLPGMQAAFVD+G Sbjct: 6 LVVNAEGPETRVGVVHEGTLSEYFVESKRDRGIVGNIYRGRVSRVLPGMQAAFVDLGPTV 65 Query: 63 DKAAFLHASDIMPHTECVA---------------------GEEQKQFTVRDISELVRQGQ 101 ++A FL+ +DI+ + ++ R I +L++ Q Sbjct: 66 ERAGFLYVADILGAADERKLFADEDPDSDDAPEGTAARLARSRKRANANRKIEDLLKADQ 125 Query: 102 DLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY 161 +++VQVVK+P+G KGARLT ++LP RY VFMP VGVS+RI SE+ER RL+K+V Sbjct: 126 EVLVQVVKEPIGLKGARLTGYLSLPGRYNVFMPAVQQVGVSRRISSEAERRRLRKIVTSV 185 Query: 162 CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 221 + GGFI+RTAAEGV + E+ D YL R+W+++ R++ + +Y +L L R +R Sbjct: 186 GHKSGGFIVRTAAEGVVDQEIRDDVDYLLRLWSEIQRRERSMKGPGLIYADLDLVLRTIR 245 Query: 222 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 281 D A+ I +D Y+ +FT ++P +++ Y GRQPIFD + VE E++ AL Sbjct: 246 DLLRADTKEIVIDDEEQYDRARKFTMAFLPPAVDRIKQYRGRQPIFDHYGVEAELRTALG 305 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLG 341 R+VELKSGG L+IDQ EA+T +D+NTG+FVG R+L++T+ NIEA + +ARQLRLRN+G Sbjct: 306 RRVELKSGGSLVIDQGEALTAIDVNTGSFVGKRDLEETVTKNNIEACREVARQLRLRNIG 365 Query: 342 GIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 GII+IDF+DM+ E++R++V L QAL+ DR + ++ S LGLVEMTRKRTRES+ +L Sbjct: 366 GIIVIDFVDMDKENNRKKVWDILNQALASDRSRCNLTKISELGLVEMTRKRTRESLNQLL 425 Query: 402 CNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLA 461 CPTC G G VK+ TV +E++RE+ R+ ++D V +P VA+ L E L Sbjct: 426 TEACPTCSGSGVVKSTTTVAHEVLREVRRLGSHAEADSIDVECAPVVADLLDKYERGYLD 485 Query: 462 EVEIFVGKQVKVQIEPLYNQEQFDVV 487 E+E K+V +Q Y +Q+ V+ Sbjct: 486 ELEKKFQKKVVIQSNGGYRPDQYQVM 511 >UniRef50_A0LIP4 RNAse G n=22 Tax=Bacteria RepID=A0LIP4_SYNFM Length = 530 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 233/519 (44%), Positives = 331/519 (63%), Gaps = 30/519 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+AEL++N + ETRVA ++ G + E+HIER + RGI GNIYKGRV +VLPGMQAAFVDI Sbjct: 1 MSAELIINGSAFETRVALVENGQVAELHIERSSDRGIAGNIYKGRVVKVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAG------------------------------EEQKQFTV 90 L+KAAFL+ SDI V + Q+ ++ Sbjct: 61 DLEKAAFLYVSDIHHPMGDVEQLLLSTCEVEPDVEKVDSAREPGAPEFQDVLDLQRYYSS 120 Query: 91 RDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESE 150 I E +++GQ+++VQV K+P+G KGAR+TT ITLP R+LVFMP HVGVS+RIE+E E Sbjct: 121 VPIEERLQEGQEILVQVAKEPIGHKGARITTHITLPGRHLVFMPTMDHVGVSRRIENEVE 180 Query: 151 RERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLY 210 R+RL++++ E GFI+RTAAEG +L + +L +VW + R + +Y Sbjct: 181 RKRLREIMCEIKPSHCGFIVRTAAEGAEPEKLQVEVDFLVKVWQNIQRRFESASVPSLVY 240 Query: 211 GELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLF 270 EL + R +RD E+DR+ +DSR ++ + F ++P + S +E Y G +PIFD + Sbjct: 241 QELDITLRAVRDLFTKEVDRLVIDSRSEHKKITNFIETFLPALQSSIELYEGDEPIFDAY 300 Query: 271 DVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQA 330 +E E+QRAL +K+ LKSGGY++I+ TEA+T VD+NTG +VG RNL++TI TN+EA + Sbjct: 301 GIEMEVQRALSKKIWLKSGGYIVIEMTEALTAVDVNTGRYVGKRNLEETILKTNLEAVKE 360 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 IA QLRLRN+GGIIIIDFIDM E +R +V ++L+ A+ KD+ KT++ S LGL+EMTR Sbjct: 361 IAYQLRLRNIGGIIIIDFIDMEKESNREKVCNALKDAMHKDKSKTNILHMSELGLIEMTR 420 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE 450 KRTRESI VLC C C G G +K+ +TVCYEI+RE+ R +V A P VA Sbjct: 421 KRTRESIGQVLCEPCFYCEGEGYLKSRQTVCYEILRELEREKRDLYGQNIMVLAHPEVAA 480 Query: 451 ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM 489 E+ L VE + ++ V+ +P ++ EQ+++ + Sbjct: 481 RFCDEDRGPLERVEETLHARIMVKGDPGFHLEQYEIAPL 519 >UniRef50_D2SCS1 Ribonuclease, Rne/Rng family n=39 Tax=Bacteria RepID=D2SCS1_9ACTO Length = 1048 Score = 529 bits (1363), Expect = e-149, Method: Composition-based stats. Identities = 162/421 (38%), Positives = 247/421 (58%), Gaps = 9/421 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++++ T++A ++ +L E ++ + GN+Y GRV VLP M+AAF+DIG Sbjct: 385 DRKMVIRQRGERTQIAVLEDDVLVEHYVTQAQATSFAGNVYLGRVQNVLPSMEAAFIDIG 444 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ ++G+++ I + ++ G ++VQV KDP+G KGARLT Sbjct: 445 KGRNAVLYAGEVNWDAAGLSGKQR------SIEQALKSGDKVLVQVTKDPIGHKGARLTQ 498 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 + LP R+LV++PG S G+S+++ +ER+RLK V+ + E G IIRTAAEG E E Sbjct: 499 QVNLPGRFLVYVPGGSMTGISRKLPD-TERQRLKDVLKKIVPEDAGVIIRTAAEGASEEE 557 Query: 182 LASDAAYLKRVWTKVMERKKRP-QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L D L+ W + + + LYGE LA RV+RD + + + V ++ Sbjct: 558 LTRDVNRLQAQWDVIQRKAESSSNAPSLLYGEPDLAIRVIRDVFNEDFKELVVQGDDAWD 617 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + + PE+ +L +TG +F ++ ++ +AL+RKV L SGG L+ID+TEAM Sbjct: 618 TVEAYVAHVSPELVGRLTRHTGEGDVFRDLRIDEQLAKALDRKVWLPSGGSLVIDRTEAM 677 Query: 301 TTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 T VD+NTG F G NL+ T+ N+EA + I RQLRLR++GGII+IDFIDM E +R Sbjct: 678 TVVDVNTGKFTGSGGNLEQTVTRNNMEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDL 737 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 VL L + L +DR K V ++LGLV+MTRKR + + V C C GRG V ++ Sbjct: 738 VLRRLTECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEVFSEPCEHCRGRGVVVHIDP 797 Query: 420 V 420 V Sbjct: 798 V 798 >UniRef50_D1AAW2 Ribonuclease, Rne/Rng family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAW2_THECD Length = 1041 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 167/453 (36%), Positives = 262/453 (57%), Gaps = 22/453 (4%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +++ T++A ++ G+L E +++R + + VGN+Y G+V VLP M+AAFVDIG Sbjct: 508 ERVMVICQRGERTQIAVLEDGVLVEHYVDRASHQSYVGNVYLGKVQNVLPSMEAAFVDIG 567 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G+ ++ I + ++ GQ ++VQV KDP+G KGARLT+ Sbjct: 568 KGRNAVLYAGEVNWDVAGLVGQPRR------IEQALKSGQSVLVQVTKDPVGHKGARLTS 621 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I+LP RYLV++P S G+S+++ + ER RLK+V+ + + G I+RTAAEG E E Sbjct: 622 QISLPGRYLVYVPDGSMTGISRKLPDK-ERSRLKQVLKKIMPDNAGVIVRTAAEGATEEE 680 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 LA D A L W + ++ K L+GE L RV+RD + + ++ V ++ Sbjct: 681 LAGDIARLSAQWEHIHKQAKTASAPALLHGEPDLTIRVVRDIFNEDFSKLVVSGDTAWDM 740 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + E+ P + +LE + Q + + ++ +I +ALERKV L SGG L+ID+TEAMT Sbjct: 741 VSEYVGYVAPHLAERLERWESDQDVLSAYRIDEQIAKALERKVWLPSGGSLVIDRTEAMT 800 Query: 302 TVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 VD+NTG F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R V Sbjct: 801 VVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELV 860 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L L + LS+DR K V ++LGLV+MTRKR + + C C+GRG V Sbjct: 861 LRRLLECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEAFSEPCECCNGRGIHIQTTPV 920 Query: 421 CY--------------EIMREIVRVHHAYDSDR 439 + ++ R + +++++ Sbjct: 921 EHGSDKSGGRRRKRKGDVERAVEEKLAKHEAEK 953 >UniRef50_Q8K9J9 Ribonuclease E n=5 Tax=Buchnera aphidicola RepID=RNE_BUCAP Length = 968 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 157/492 (31%), Positives = 262/492 (53%), Gaps = 9/492 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N T E RVA +DG L ++ IE NIYKG+++R+ P ++A F+D G Sbjct: 2 KRMLINATQQEELRVALVDGQRLYDLDIESSRSEQKKSNIYKGKITRIEPSLEAVFIDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++K FL +I + E +I +++R+GQ+L+VQ+ K+ GTKGA LTT Sbjct: 62 MEKHGFLPLKEISKNYF---PENYNCDVRLNIKDILREGQELIVQINKEERGTKGAALTT 118 Query: 122 DITLPSRYLVFMPGASHV-GVSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVGE 179 ITL YLV MP + G+S+R+E S+R LK++++ E+ G IIRTA G Sbjct: 119 FITLAGSYLVLMPNNPKIAGISRRVEG-SDRIELKELLSSLKIPEKMGLIIRTAGVGKSI 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D + + W + + K+ + +Y E + R RD+ ++ I +D+ Sbjct: 178 KSLQWDLSLRLKHWNAIKKASKKKSAPFLIYQESNVIVRAFRDYLRQDIGEILIDNPKIL 237 Query: 240 EALLEFTSEY-IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + E + P+ +K++ YTG P+F + +E++I A +RKV L SGG +++D TE Sbjct: 238 DIAREHITALGRPDFINKIKLYTGEIPLFSYYQIESQIDSAFQRKVRLPSGGSIMVDTTE 297 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +DIN+ +++ T FNTN+EA + I+RQLRLR+LGG+I+IDFIDM H++ Sbjct: 298 ALTAIDINSSRSTRGADIETTAFNTNLEAVEEISRQLRLRDLGGLIVIDFIDMTTISHQK 357 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 + + L + + +DR + + S GL+EM+R+R S+ + CP C G GT++ E Sbjct: 358 IIENKLREIVREDRARIQIGHISKFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNE 417 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFV-GKQVKVQIEP 477 ++ I+R I ++ +A L E+ ++ +E G + + Sbjct: 418 SLSLSILRLIEEEALKENTYEVHAIVPIEIACYLLNEKREAVYAIEKRQAGGKTIIVPNK 477 Query: 478 LYNQEQFDVVMM 489 + V + Sbjct: 478 NMKTPHYLVSRI 489 >UniRef50_A0LJB4 RNAse E n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJB4_SYNFM Length = 495 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 171/491 (34%), Positives = 266/491 (54%), Gaps = 8/491 (1%) Query: 1 MTAELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ +++N P E RVA ++G L+ IE R +VGNIYKG V+ V P +QAAFV+ Sbjct: 1 MSQTMIINAIHPEEFRVALMEGQTLEGFFIETATRGKVVGNIYKGIVTHVQPSLQAAFVN 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G+++ FL +I P +E+ + I +++ GQ+++VQVVK+ LG+KGA L Sbjct: 61 YGMERNGFLPFPEIHPEYYEEDSDERVR-----IQDVIHSGQEVLVQVVKEELGSKGALL 115 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVG 178 TT I+L R +V MPG S GVS++IE +RERLK++ + E+ G I+RTAAEG Sbjct: 116 TTYISLAGRDVVLMPGQSQRGVSRKIEDGGQRERLKELAGDLKVPEEFGVILRTAAEGRT 175 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + E+ D +L ++W ++ + + +Y E LA RV+RD+ + + I VD R Sbjct: 176 KREVTKDFNHLMKIWEEIRKHVQETPAPALIYKEQDLAVRVIRDYFNPNIKTILVDDREV 235 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + + +F P + Y PI +++E +I + +KV LKSGG+L+ID TE Sbjct: 236 LKQVKDFIRIISPRHDRVVRFYKEDGPITGKYNLEEQIAQIFRKKVPLKSGGHLVIDPTE 295 Query: 299 AMTTVDINTGA-FVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 A+ VD+N+G G L++ +F N+EA I RQLRLR+LGG+I+IDFIDM + H Sbjct: 296 ALVAVDVNSGRTNSGEGALEEMVFKVNMEAAAEIPRQLRLRDLGGLIVIDFIDMRDNRHT 355 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 R V L++ + KD+ K +V S GL+E++R+ +I ECP C G G V++ Sbjct: 356 REVERRLKEEIKKDKAKITVGRISRFGLLELSRQHLGLNIMRGSYKECPLCQGAGMVRSA 415 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 ET +R+I +P VA L + L +E G ++++ Sbjct: 416 ETTALCYLRKIWLTLSQKKPASVRATFAPEVAHYLLNRKRQELTRLEERYGTNIQIESLA 475 Query: 478 LYNQEQFDVVM 488 + Sbjct: 476 TMLPHDGHLEF 486 >UniRef50_C7Q8B4 Ribonuclease, Rne/Rng family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q8B4_CATAD Length = 1334 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 164/422 (38%), Positives = 249/422 (59%), Gaps = 10/422 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V + T++ ++ G+L E ++ R VGN+Y G+V VLP M+AAFVDIG Sbjct: 682 ERVMVVRQSGDRTQIGVLEDGVLVEHYVNRAQSASYVGNVYLGKVQNVLPSMEAAFVDIG 741 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G+ ++ I +++ GQ ++ QV KDP+G KGARLT+ Sbjct: 742 KGRNAVLYAGEVNFEAAGITGQAKR------IESVLKSGQAVLTQVTKDPIGHKGARLTS 795 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I+LP RYLV++P + G+S+++ E+ER RLK ++ E G I+RTAAEG E E Sbjct: 796 QISLPGRYLVYVPEGTMTGISRKL-PENERNRLKTILKAVVPEHAGVIVRTAAEGATEDE 854 Query: 182 LASDAAYLKRVWTKVMERKKRP--QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D L W ++ + K LYGE L RV+RD + + ++ V + Sbjct: 855 LRRDVERLSAQWEEIQRKAKTSAGSAPTLLYGEPDLTVRVVRDIFNEDFSKLVVSGDQAW 914 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + E+ P++ +LE +T Q IF + V+ ++ +AL+RKV L SGG L+ID+TEA Sbjct: 915 DTIREYVGGVAPDLAPRLERWTSEQDIFAVHRVDEQLAKALDRKVWLPSGGSLVIDRTEA 974 Query: 300 MTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 M +D+NTG F G NL++T+ NIEA + I RQLRLR+LGGII+IDFIDM E +R Sbjct: 975 MVVIDVNTGKFTGSGGNLEETVTRNNIEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRD 1034 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V+ L + L +DR K V ++LGL++MTRKR + + C C+GRG + +E Sbjct: 1035 LVMRRLLECLGRDRTKHQVAEVTSLGLIQMTRKRVGQGLLEAFSETCDKCNGRGVLVHME 1094 Query: 419 TV 420 V Sbjct: 1095 PV 1096 >UniRef50_B3DX65 Ribonuclease G and E n=7 Tax=Verrucomicrobia RepID=B3DX65_METI4 Length = 554 Score = 527 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 189/497 (38%), Positives = 281/497 (56%), Gaps = 11/497 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E+ ++ P E RVA +D G+L+E IER +++ I NIYKGRV+ + G++A FVDIG Sbjct: 49 NKEIAISCEPLERRVALLDEGLLEEFAIERGSQKEIAQNIYKGRVNNIDQGLKALFVDIG 108 Query: 62 LDKAAFLHASDIMPHTECVA---------GEEQKQFTVRDISELVRQGQDLMVQVVKDPL 112 + K AFLH D +P + + DI + G +++VQV K P+ Sbjct: 109 IGKNAFLHFWDAIPAALDAGIELFERKGTKSKARLPRAEDIPNIYPPGSEVVVQVTKGPI 168 Query: 113 GTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIR 171 GTKG R+TT+ITL RYLV MP G+S++IE ER RL+K++ E E G IIR Sbjct: 169 GTKGPRVTTNITLAGRYLVLMPYNEQFGISRKIEDPKERARLRKILNELRIPEGMGVIIR 228 Query: 172 TAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRI 231 T EG D A L + W + ++ + LY E L +R +RDF ++++I Sbjct: 229 TVGEGQKSRYFVRDLAILLQKWNAIEQKMRECPAPVLLYMEPDLIERTVRDFLTDDVEKI 288 Query: 232 RVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGY 291 +D + + + ++ K+ +Y P+F+ ++E +I A RKVEL SGGY Sbjct: 289 YIDDENEVKRIKDLVAQISKRSQKKIIYYNEPIPLFEKLNIERQIDTAFMRKVELPSGGY 348 Query: 292 LIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDM 351 +IID+TEA+ +D+NTG ++ D+ I TNIEA I+RQLRLRN+GG+++IDFIDM Sbjct: 349 IIIDETEALVAIDVNTGKAKVGKDQDNMILKTNIEAAAEISRQLRLRNIGGLVVIDFIDM 408 Query: 352 NNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGR 411 + + V L++ + KDR K ++ S+ GLVEMTR+R +ESI H L CP CHGR Sbjct: 409 KSRRDQHLVFEKLKECVRKDRAKINLLPISSFGLVEMTRQRVQESIWHSLYVPCPHCHGR 468 Query: 412 GTVKTVETVCYEIMREIVRVHHAYD-SDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQ 470 G VK+ ET+ EI R I RV + V + V + LK E+ L ++E + + Sbjct: 469 GMVKSPETMSIEIQRAINRVIRLHPEVKELRVILNGFVLDRLKSEDEELLVDLERRMQGK 528 Query: 471 VKVQIEPLYNQEQFDVV 487 + + +P N E+F +V Sbjct: 529 LYFRTDPRINYEEFKIV 545 >UniRef50_Q2LU58 Ribonuclease E n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU58_SYNAS Length = 630 Score = 526 bits (1355), Expect = e-148, Method: Composition-based stats. Identities = 159/491 (32%), Positives = 263/491 (53%), Gaps = 4/491 (0%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M +L+N E R+A ++ G L E +I+ R I GNIYKG V +V G+QAAFV+ Sbjct: 1 MKHIMLINAVHHEQKRMAIVEDGKLVEFNIQMSLREPITGNIYKGIVLKVERGLQAAFVN 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G+ K FL D+ P E ++ ++ GQ+++VQV ++ G KGA L Sbjct: 61 FGVGKDGFLPLRDVSPAYFTEKKEAGRESAHSR--GSLKIGQEVIVQVAREVSGRKGALL 118 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVG 178 TT ++LP RYLV +P G+S++IE+E +R LK +V + DE GFI+RTA Sbjct: 119 TTYLSLPGRYLVLLPNKHSSGISRKIEAEEDRRLLKTLVEQIKIDEGMGFIVRTAGINRT 178 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + EL+ D +L R+W ++ +R + +Y E R LRD+ +E++ I VD T Sbjct: 179 KQELSRDYQHLLRLWKEIQKRAETDPAPALIYQESDFGVRSLRDYFTSEIEEILVDDLET 238 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 Y + + P ++ Y R PIF +++E +I+ + +VELKSGG ++I TE Sbjct: 239 YRKMRAYCKAVAPRNLRMIKQYKERLPIFSQYNLEEQIREIYQERVELKSGGSIVISPTE 298 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 AM T+D+N+G +N++DT F TN+EA + I RQLRLR+LGG+I+IDFIDM + H Sbjct: 299 AMITIDVNSGRASNKKNVEDTAFKTNLEAAEEIGRQLRLRDLGGLIVIDFIDMTDRKHEA 358 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V + ++AL+ DR + ++ S G++E++R++ +I+ + CP C G G ++E Sbjct: 359 EVEKTFKKALTLDRARIQMSRISKFGILELSRQKKHSTIQEISYTTCPFCSGSGIRPSLE 418 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPL 478 R+I ++ + +A+ L ++ + +E + + + Sbjct: 419 YTALSAFRKIETEAAKEKANALKISVPYEIADYLLNQKRTDIQRIETLYDLSIHISGKAD 478 Query: 479 YNQEQFDVVMM 489 + + + Sbjct: 479 MTWDHAAISAV 489 >UniRef50_B8FM65 Ribonuclease, Rne/Rng family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FM65_DESAA Length = 529 Score = 525 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 205/518 (39%), Positives = 307/518 (59%), Gaps = 31/518 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +L++N ETRVA ++ G L E++IER IV NIYKGRV RVLPGMQAAFVDI Sbjct: 1 MEKKLIINDAGFETRVALVEDGALAELYIERTGESDIVSNIYKGRVMRVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVA-------------------------------GEEQKQFT 89 GLD+AAF++ D++ + Sbjct: 61 GLDQAAFIYVDDVVMDFPSDETGSPLIHEDEEDQEVILLDAEDDDDEIEEAARIIRPPRI 120 Query: 90 VRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESES 149 I +++R+GQ++MVQV K P+G KGAR+T+ IT+P R+LV MP +H+GVS+RI Sbjct: 121 RPSIEDMIREGQEIMVQVAKSPIGKKGARVTSRITIPGRFLVLMPTTNHIGVSRRITDSG 180 Query: 150 ERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQL 209 ER RLK+ + E E G+I+RT EG+G +L + +L RVW +V+ R + L Sbjct: 181 ERNRLKEQLMEARVEPFGYIVRTVCEGIGPEKLTHEVEFLTRVWKRVVHRYWQCSAPSLL 240 Query: 210 YGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDL 269 + EL+ + R +RD E+DR+ +DS Y + +F +P + +++Y R+PIFD Sbjct: 241 HQELSASLRSVRDLFTKEVDRLVIDSERGYREIQDFLEPNMPGLRDAVQYYDRREPIFDA 300 Query: 270 FDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQ 329 + +E +I R +KV LKSGGY++I++TEA+ ++D+NTG +VG +L +TI TN+EA + Sbjct: 301 YQLEGDISRLGRKKVWLKSGGYIVIEETEALVSIDVNTGRYVGKGDLSETILKTNLEALK 360 Query: 330 AIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMT 389 IA QLRLR++GGII+IDFIDM + R +V L + L KDR T+V S +GL++MT Sbjct: 361 EIAYQLRLRDIGGIIVIDFIDMEKLEDRDKVYQVLVETLKKDRSTTNVLPMSEMGLIQMT 420 Query: 390 RKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVA 449 RKRTRE+I L C C G G V + +++C+ I REI+R + R V A P +A Sbjct: 421 RKRTRENINRQLSEPCAYCEGEGIVLSKKSICHNIYREILRQSYDIQGSRISVKAHPEIA 480 Query: 450 EALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 L EE+ ++ +E + + +Q +P + E+F+++ Sbjct: 481 RFLLEEENITVLSLEQRIETPILIQADPALHIERFEIM 518 >UniRef50_A7C082 Ribonuclease G and E n=1 Tax=Beggiatoa sp. PS RepID=A7C082_9GAMM Length = 518 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 259/521 (49%), Positives = 363/521 (69%), Gaps = 38/521 (7%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ E+L+NVT ETRVA I+ GILQE+ IER ++RG+V NIYKGRV RVLPGMQAAFV+I Sbjct: 1 MSEEVLINVTSRETRVAMIENGILQEVIIERTSKRGLVSNIYKGRVCRVLPGMQAAFVEI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL++AAFLH SDI+ E Q I EL+ +G+ L+VQV+KDPLGTKGARLT Sbjct: 61 GLERAAFLHLSDIINTHLQAGIEPANQ-----IDELLHEGKTLLVQVIKDPLGTKGARLT 115 Query: 121 TDITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEYCD---------------- 163 I++PSRY+V +P + +G+S RIES ER+RLK + ++ Sbjct: 116 AQISIPSRYVVLLPYSPNMIGISTRIESPEERQRLKDIALQHTGMVEQDKLTETKDNNET 175 Query: 164 ----------------EQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRY 207 + GFI+RT AE E L +D +L R+WT + E++ + + Sbjct: 176 VMMHAVSSPKTSVESGKNYGFILRTVAEEAEENFLCADMDFLCRLWTDIQEKETKVKPCS 235 Query: 208 QLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIF 267 +Y +L+L R +RD + + +D+I++DSR T+ ++ F ++IP++ +EHYTG +P+F Sbjct: 236 LVYRDLSLVLRTIRDLSGSSIDKIKIDSRDTHHQVVNFAKKFIPDLVPHIEHYTGERPLF 295 Query: 268 DLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEA 327 DL+ +++EI +ALE KV LKSGGYL+IDQTEAMTT+D+NTG +VG RNL++TIF TN+EA Sbjct: 296 DLYSIDDEINKALEPKVPLKSGGYLVIDQTEAMTTIDVNTGGYVGSRNLEETIFRTNLEA 355 Query: 328 TQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVE 387 QAIARQLRLRNLGGIII+DFIDM +E+H+R+VL +LE+ L +DR K+ ++ S LGLVE Sbjct: 356 AQAIARQLRLRNLGGIIILDFIDMKDEEHQRQVLRTLEKCLERDRTKSYISEISQLGLVE 415 Query: 388 MTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPA 447 MTRKRTRES+EH LC CPTC GRGT+KT ETVCY+I R+IVR +++ +FLV AS Sbjct: 416 MTRKRTRESLEHTLCRTCPTCRGRGTIKTAETVCYDIFRDIVRFTQQFETQKFLVLASQK 475 Query: 448 VAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 + + + +ES+S+ E+E +G ++ Q+E Y+QE +D++ Sbjct: 476 IVDTMLEDESNSVLELEESIGCSIRFQVETSYSQELYDIIP 516 >UniRef50_C7MPQ3 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycetales RepID=C7MPQ3_SACVD Length = 1093 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 161/424 (37%), Positives = 242/424 (57%), Gaps = 13/424 (3%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V T++ ++ G+L E + IVGN+Y GRV VLP M+AAF+DIG Sbjct: 495 ERTMVVAERGDSTQIGVLEDGVLVEHFVTSSDSGSIVGNVYLGRVQNVLPSMEAAFIDIG 554 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G R I + + G ++VQV KDP+G KGARLTT Sbjct: 555 RGRNAVLYAGEVDWDAAGLEG------KARKIEQALTTGDHVLVQVTKDPVGHKGARLTT 608 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I+LP R+LV++P G+S+++ E+ER RLK ++ G IIRTA+EG+ E E Sbjct: 609 QISLPGRFLVYVPSGGATGISRKL-PENERRRLKDILKRIVPSDAGVIIRTASEGISEEE 667 Query: 182 LASDAAYLKRVWTKVMERK-----KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSR 236 LA D LK W + E+ K+ LY E L +V+RD + ++ V Sbjct: 668 LARDVRRLKAQWEVIKEKAEAASAKKSGAPALLYQEPDLLVKVIRDLFTEDFKKLVVQGD 727 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 +E + + P++ ++E Y G +F + ++ ++ +AL+RKV L SGGYL+ID+ Sbjct: 728 TAWETIRNYVEHVAPDLLDRVERYVGTGDVFADYRIDEQLMKALDRKVWLPSGGYLVIDR 787 Query: 297 TEAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 TEAMT +D+NTG F G NL++T+ N+E+ + I RQLRLR++GGII+IDFIDM E Sbjct: 788 TEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLES 847 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 +R VL L + LS+DR + V ++LGLV+MTRKR + C C GRG + Sbjct: 848 NRELVLRRLTECLSRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAFSTTCEHCKGRGVIV 907 Query: 416 TVET 419 + + Sbjct: 908 STDP 911 >UniRef50_A4XJ17 Ribonuclease G n=7 Tax=Clostridia RepID=A4XJ17_CALS8 Length = 571 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 196/489 (40%), Positives = 309/489 (63%), Gaps = 4/489 (0%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +E++V+V+ ETRVA ++ L EI+IER ++ IVGNIYKG V +LPGM AAFV+I Sbjct: 1 MQSEIIVDVSFGETRVAVLEDKELVEIYIERNDQQSIVGNIYKGVVENILPGMDAAFVNI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK AFL+ DI G+ + + ++ +R GQ+++VQV+K+ KG R+T Sbjct: 61 GQDKNAFLYLGDINRLEF---GDTDEYYEIKTNPLALRCGQEIVVQVIKEAYDQKGPRVT 117 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T+ITLP RYLV +P ++G+S+RIE E ER RLK++ + + G I+RTAAEG E Sbjct: 118 TNITLPGRYLVLLPNTDYIGISKRIEFEEERTRLKEIACKIKPDGMGLIVRTAAEGKSEE 177 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L ++ +L+ +W K+ ++ K LY + L + +RD ++DR ++ R Y Sbjct: 178 VLRNELEFLRNLWQKIRQKSKES-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYN 236 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 ++EF S Y P + SK+E++ IF+ F +E ++ +AL +++ LKSGGY++ID+TEA+ Sbjct: 237 KIIEFLSTYAPSLKSKVEYFNLATNIFEYFQIEQKLSKALSKRIWLKSGGYIVIDETEAL 296 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG FVG ++ +TI TN+EA IARQ+RLR++GGIIIIDFIDM N +H++ V Sbjct: 297 TVIDVNTGKFVGKNDVSETILKTNLEAAVEIARQIRLRDIGGIIIIDFIDMKNPEHQKLV 356 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L +L++AL +D+ KT V G + LGLVEMTRK+ R+ + ++ + CP C G G + + ETV Sbjct: 357 LDALKEALKRDKTKTVVVGITPLGLVEMTRKKVRQRLSCIMQSCCPYCEGSGKILSPETV 416 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 ++++EI ++F V + V E L+ E + E++ K+V ++ + Sbjct: 417 GLKVLKEIEWYFKNRVEEKFFVEINTKVCEVLRKGEVDRIKELQEKYKKKVYLKASSNIH 476 Query: 481 QEQFDVVMM 489 +F + + Sbjct: 477 INKFTICPV 485 >UniRef50_A5EVP9 Ribonuclease g n=16 Tax=Gammaproteobacteria RepID=A5EVP9_DICNV Length = 496 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 232/487 (47%), Positives = 346/487 (71%), Gaps = 8/487 (1%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E+LVN TP ETRVA ++ G+L ++ IERE RRGIVGNIYKG+V RVLPGM+AAF+DIGL+ Sbjct: 17 EILVNHTPYETRVALLEDGLLHDVLIERERRRGIVGNIYKGKVQRVLPGMEAAFIDIGLE 76 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 +A FLH +I TE V E+ ISE++ +G+ ++VQV+KDP+GTKGARLTT+I Sbjct: 77 RAGFLHMKNISLPTEMVGKEQ-------KISEILHEGESILVQVLKDPIGTKGARLTTEI 129 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAEL 182 ++ SR+LVF+P + +GVS +I SE++R+ L++++ E+ ++GGFI+RTA E + Sbjct: 130 SISSRFLVFLPKSHDIGVSIKIVSETQRQNLREMMHEFHRGQEGGFIVRTAIETADFWAM 189 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 +D YL RVW ++ + +YG+L L QRVLRD+ ++ ++ VD Y A+ Sbjct: 190 RADMQYLHRVWDSILTTYRESYASTLIYGDLPLYQRVLRDYISPQVKQVIVDDPEAYRAM 249 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 +F ++ EM ++ Y G + +FD + VE EI+RAL+R+V+LKSGGYL+IDQTEAMTT Sbjct: 250 AQFAGNFLIEMADRITLYDGDRTLFDRYGVEEEIERALKRRVDLKSGGYLMIDQTEAMTT 309 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+NTG FVG + +DTIF TN+EA +AIARQLR+RNLGGII++DFIDM + +H++ V+ Sbjct: 310 IDVNTGGFVGKSSQEDTIFKTNLEAAKAIARQLRIRNLGGIIMLDFIDMTSTEHQQSVVD 369 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +L AL+ D+ K +++ S LG++EMTRKRTRES++ V+C CP C GRG VKT ET+ Y Sbjct: 370 ALLNALAGDKSKYTISPISPLGIIEMTRKRTRESLKQVMCETCPRCSGRGYVKTTETIVY 429 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 E+ R+++R Y V +P E ++ EES + ++++I + +++Q + Y+Q+ Sbjct: 430 ELFRDLMREAREYAPKGMTVIGNPDFIEFIREEESMAFSDLQILLKMPIRLQSDGAYSQD 489 Query: 483 QFDVVMM 489 ++D+VMM Sbjct: 490 KYDIVMM 496 >UniRef50_D2PUT1 Ribonuclease, Rne/Rng family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUT1_9ACTO Length = 1119 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 160/439 (36%), Positives = 252/439 (57%), Gaps = 8/439 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +++ T++A + +L E ++ +E + ++GN+Y GRV VLP M+AAF+DIG Sbjct: 529 ERAMVIRARGDLTQIAVSEDNVLVEHYVAQEEQVSLIGNVYLGRVQNVLPSMEAAFIDIG 588 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ +T + I +++ GQ ++VQV KDP+G KGARLT Sbjct: 589 KGRNAVLYAGEVDWNTLGGGNGPR------KIESVLKSGQAVLVQVTKDPIGHKGARLTN 642 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I+LP RY+V++P + G+S+++ +ER RLK ++ + ++ G I+RTAAEG E E Sbjct: 643 QISLPGRYVVYVPRGGNGGISRKLPD-TERSRLKGILKDIVPDEAGVIVRTAAEGATEEE 701 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L +D + L+ W + ++ K Q L+GE L RV+RD + ++ + ++ Sbjct: 702 LTADVSRLQAYWEDIDKKSKSGQAPQLLHGEPDLLIRVVRDLFTEDFAKLVISGDDAFDQ 761 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + E+ S P + ++ +TG +F F ++ +I++AL+RKV L SGG LIID+TEAMT Sbjct: 762 VSEYVSAVAPHLAERVAKWTGDGDVFANFRIDEQIKKALDRKVWLPSGGSLIIDRTEAMT 821 Query: 302 TVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 VD+NTG F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R V Sbjct: 822 VVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLV 881 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L L + L +DR K V ++LGLV+MTRKR + C C GRG + E Sbjct: 882 LRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRIGTGLLEAFGENCDHCGGRGLILHDEPK 941 Query: 421 CYEIMREIVRVHHAYDSDR 439 ++ + Sbjct: 942 ESRRRQDGRGGAEQKNGHD 960 >UniRef50_B2GGD5 Putative ribonuclease n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GGD5_KOCRD Length = 1145 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 160/422 (37%), Positives = 245/422 (58%), Gaps = 10/422 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +LV ++ ++ GIL E + + ++GN+Y G+V VLP M+AAFVDIG Sbjct: 331 ERTMLVRQKEDRIQIGVLEDGILAEHFVSHTTQDSLIGNVYVGKVQNVLPSMEAAFVDIG 390 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + + + I ++ G ++VQV KDP+G KGARLT+ Sbjct: 391 RGRNAVLYAGEVDWDAAEMGHKPR------KIENALKSGDTVLVQVTKDPVGHKGARLTS 444 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ++LP RYLV++PG S G+S+++ ER+RLKK++ + E G I+RTAAEG E E Sbjct: 445 QVSLPGRYLVYVPGGSMTGISRKLPD-VERQRLKKILKDRLPEGAGVIVRTAAEGASETE 503 Query: 182 LASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L +D L+ W ++ E+ + LY E L + +RD + + + V + Sbjct: 504 LTNDINRLRSQWEQIQEKAGSTKTLAPELLYAEPDLTIKTVRDVFNEDFTAMVVQGEQAW 563 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + + + P++ +L+ +T + +F+ VE +IQ+ALERKV L SGG L+ID+TEA Sbjct: 564 DNIEAYVTYVAPDLLDRLQRWTEDEDLFEHMRVEEQIQKALERKVFLPSGGSLVIDRTEA 623 Query: 300 MTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 MT VD+NTG F G NL++T+ N+EA + I RQLRLR++GGII++DFIDM E +R Sbjct: 624 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRD 683 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL L + L +DR K V ++LGLV+MTRKR + V C C GRG + Sbjct: 684 LVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFSEPCEECAGRGVLVHDH 743 Query: 419 TV 420 + Sbjct: 744 PL 745 >UniRef50_UPI0001C430FE cytosolic axial filament protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C430FE Length = 503 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 188/489 (38%), Positives = 287/489 (58%), Gaps = 4/489 (0%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++ N E R A ++ G + E+ +ER A IVGN+Y GRV VLPGMQAAFVDI Sbjct: 1 MNRKIYFNTATRERRAAIVENGQVVELLVERPAENRIVGNVYIGRVVNVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G +K FL+ D++ +E K R+I+E V +GQ+L+VQV K+ G KG RL+ Sbjct: 61 GREKNGFLYRDDLLSFHLSEEADEVK--KQRNITEFVTKGQELLVQVTKEGFGQKGPRLS 118 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 +++P +Y V+MP +VGVS+R+ +E ERERL+ + + E G IIRT E Sbjct: 119 GVVSMPGKYTVYMPEGGYVGVSRRMGTEEERERLRGIGEDLLKENEGMIIRTVCEDAKPE 178 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 + D +L+ W V + K + ++ +L ++++ DF+ ++D I +D Y+ Sbjct: 179 VIEQDLHFLRTSWESVWQEGKEKRAPALIHQGSSLIEKMMLDFSLNQIDEIVIDDADDYQ 238 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 L + Y ++ K+ Y ++ IF +F ++ E+ +AL R++ LK+G YLI+DQTEA+ Sbjct: 239 TLKALLAPY-SDVHEKVRLYHDKENIFSVFGIDKELDKALRRQIWLKNGAYLIVDQTEAL 297 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG F G +L DT+ TN+EA + IARQLRLR+ GIIIIDFIDM E+ R V Sbjct: 298 TVIDVNTGKFTGKTDLQDTVRKTNLEAAKEIARQLRLRDTSGIIIIDFIDMKREEDREYV 357 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L + ++ L +DR KT+V G + LGLVEMTRK+ R+S++ L CPTC +G+V + E Sbjct: 358 LEAFKRGLKQDRTKTNVVGLTGLGLVEMTRKKVRQSLQASLSKACPTCKEQGSVLSDEAQ 417 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 Y+I R I + D + L+ AV+ L G + L ++E G ++ + Sbjct: 418 AYKIERLIW-EYRGMDHEAILIELPSAVSAVLAGPKGELLKQLEEATGFRILLMPNKHMP 476 Query: 481 QEQFDVVMM 489 +E F + M Sbjct: 477 EEAFAIRFM 485 >UniRef50_C9KMZ9 Ribonuclease G n=2 Tax=Veillonellaceae RepID=C9KMZ9_9FIRM Length = 480 Score = 516 bits (1329), Expect = e-145, Method: Composition-based stats. Identities = 193/487 (39%), Positives = 294/487 (60%), Gaps = 13/487 (2%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++VN+ P ET +A ++ G LQ + +ER + +VGNIYKGRV VLPGMQAAFVDIG Sbjct: 2 KSIIVNMVPEETCMALLEDGELQAVEMERSSHSHLVGNIYKGRVQNVLPGMQAAFVDIGT 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K AFL+ D +PH + + + + GQ L +Q+VKD +GTKG R T Sbjct: 62 GKNAFLYIGDGLPHETIESMPQNAR---------IHIGQSLPIQIVKDAIGTKGPRATMH 112 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I+LP R +V MP A+++G+S+RIE E ER RL + C + G IIRT A G E L Sbjct: 113 ISLPGRNVVLMPTAAYIGMSRRIEDEGERARLHAIAERICPKGMGLIIRTVAAGQSEQSL 172 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRY-QLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 A+D YL R+W ++ R K LY + L R++RD A++D + +D+ Y+ Sbjct: 173 AADVRYLVRLWESILARYKMRTKGSALLYRDADLIIRLVRDRFTADIDELVIDNEEAYQR 232 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + PE+ ++ Y + PIF + +E EI++ R+VELKSGG+L+ID+TEA+T Sbjct: 233 VRSLVEANSPELVDRIRFYEAKTPIFKAYHIEEEIEKLGAREVELKSGGFLVIDKTEALT 292 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+NTG +VG NL DT++ TN+EA I +Q+RLR++GGIII+DFIDM E + +L Sbjct: 293 VIDVNTGKYVGKTNLGDTVYQTNLEAAAEILKQIRLRDIGGIIIVDFIDMEKESQKEELL 352 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 + + + DR KT++ ++LGLVE+TRK+TR++I+ ++ +ECP CHGRG +++ ETV Sbjct: 353 TYMREQVKHDRTKTNIVDITSLGLVEITRKKTRQNIDSIVYSECPICHGRGRIESPETVA 412 Query: 422 YEIMREIVRVHHAYDSDR-FLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 I R+I R+ + + + VAE L+ + + G +KV ++P + Sbjct: 413 IRISRDIRRMERKSHAREGYEIEVHETVAEELRAN--QLMMNLAAEFGTDIKVTVKPGMH 470 Query: 481 QEQFDVV 487 E + ++ Sbjct: 471 PENYTIL 477 >UniRef50_D2R4N9 Ribonuclease, Rne/Rng family n=2 Tax=Planctomycetaceae RepID=D2R4N9_9PLAN Length = 543 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 188/524 (35%), Positives = 288/524 (54%), Gaps = 37/524 (7%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M +E+L+NV+ P E R+A I+ G+L+E++IER ++ VGNIY+GR+ + P +QAAFVD Sbjct: 7 MKSEMLINVSQPEECRIAIIEDGLLEELYIERASQDNYVGNIYRGRIVNLEPSIQAAFVD 66 Query: 60 IGLDKAAFLHASDIMPHTECVAGEE----------------------------------- 84 G+ + FLH SD+ P G + Sbjct: 67 FGVGRNGFLHISDVEPQYFRQGGYDPAEQIGGGRLADIDTGEDDDAPRPQQRRERRPPRG 126 Query: 85 QKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQR 144 + I E+ R+G +++VQV+K+ +GTKG L+T I++P RYLV MP VGVS++ Sbjct: 127 GRPRVKPPIQEIFRRGDEVLVQVIKEGIGTKGPTLSTYISIPGRYLVLMPALGRVGVSRK 186 Query: 145 IESESERERLKKVVAEYCD-EQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRP 203 IE + R L+ + E + GFI+RTA + + EL+ D AYL R+W ++ R K+ Sbjct: 187 IEDDELRRTLRDTLLELNPPKGLGFIVRTAGQDRTKKELSRDMAYLLRLWKVIVRRLKKT 246 Query: 204 QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGR 263 +Y E + R +RD AE+D I +D +E EF +P ++L Y GR Sbjct: 247 AGPATIYEESDMIIRTIRDIFTAEIDAIYIDHPEAFERAKEFLQLVMPRNVNRLHQYEGR 306 Query: 264 QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNT 323 +P+F + VE EI + +RKV L+ GG ++IDQTEA+ +D+N+G F + D+T + Sbjct: 307 EPLFHKYKVEQEIVQIYQRKVPLRGGGSIVIDQTEALVAIDVNSGNFRAEDDADETAYQL 366 Query: 324 NIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSAL 383 NI A + IARQLRLR+LGG+I+ DFIDM E HRR V +L A+ +DR +T + S Sbjct: 367 NISAAKEIARQLRLRDLGGVIVNDFIDMRKERHRRGVERALRDAMRRDRARTKILRTSPF 426 Query: 384 GLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVY 443 GL+EMTR+R R S++ + +CP C GRG VKT E++ E++R ++ + R V Sbjct: 427 GLIEMTRQRIRPSLKRSVYGDCPCCSGRGVVKTAESMAIEVVRMLMLASQQPNVSRVTVR 486 Query: 444 ASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 + VA L ++ + ++E V++ E V Sbjct: 487 VNSEVASYLNNKKRREIMKLEDDAQMVVQILSHEGAFPEHLQVE 530 >UniRef50_A4AGL0 Ribonuclease G n=3 Tax=Actinobacteria (class) RepID=A4AGL0_9ACTN Length = 944 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 156/420 (37%), Positives = 243/420 (57%), Gaps = 3/420 (0%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V ++A ++ G+L E ++ + ++GN+Y GRV VLP M+AAFVDIG Sbjct: 286 DRVMVVRSKFDRIQIAVLEDGVLVEHYVAKAQDASLIGNVYLGRVQNVLPSMEAAFVDIG 345 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L++ ++ + K R I ++ G ++VQV KDP+G KGARLT+ Sbjct: 346 RGRNAVLYSGEVDWDAAAENSADGKP-QARRIELALKPGDRVLVQVTKDPVGHKGARLTS 404 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ++LP RYLV++P S G+S+++ +ER RLKK++ E G I+RTAAEG E + Sbjct: 405 QVSLPGRYLVYVPNGSMSGISRKLPD-TERSRLKKILKGVLPENVGVIVRTAAEGATEEQ 463 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D + L W + + + Q L+ E L +++RD + + ++ ++ + Sbjct: 464 LTLDVSRLTNQWADISAQVDKVQAPALLHSEPDLLIKIIRDVFNEDFHKLVIEGDDARKT 523 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + + P++ +L+ + F+ F V +I++AL+RKV L SGG L+ID+TEAMT Sbjct: 524 IENYVRSVAPDLLDRLQPHESTVDSFEEFRVSEQIEKALDRKVWLPSGGSLVIDRTEAMT 583 Query: 302 TVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 VD+NTG FVG NL++T+ N+EA + I RQLRLR++GGII++DFIDM E +R V Sbjct: 584 VVDVNTGKFVGSGGNLEETVTKNNVEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLV 643 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L L + LS+DR K V ++LGLV+MTRK+ + C C GRG V + V Sbjct: 644 LRRLVECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSENCEVCAGRGVVVHHDPV 703 >UniRef50_A4F9K3 Ribonuclease, Rne/Rng family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F9K3_SACEN Length = 1075 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 160/425 (37%), Positives = 242/425 (56%), Gaps = 10/425 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V +T++A ++ +L E + +VGN+Y GRV VLP M+AAFVDIG Sbjct: 402 DRRMVVRENGDQTQIAVLEDNVLVENFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFVDIG 461 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ +AG R I + + G ++VQV KDP+G KGARLTT Sbjct: 462 RGRNAVLYAGEVDWDAAGLAG------KARRIEQALSTGDSVLVQVTKDPVGHKGARLTT 515 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I+LP R+LV++PG G+S+++ ER+RLK+++ E G IIRTA+EG E Sbjct: 516 QISLPGRFLVYVPGGGATGISRKLPDN-ERKRLKEILKRIVPENAGVIIRTASEGTSEEA 574 Query: 182 LASDAAYLKRVWTKVMERKKRPQT--RYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D L+ W + E+ P+ LY E L +V+RD + + V + Sbjct: 575 LDRDVRRLQAQWEVIKEKADSPKAQAPQLLYEEPDLLIKVVRDLFTEDFSAMAVQGNQAW 634 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + + P++ +L + G+ +F + +I +AL+RKV L SGGYL+ID+TEA Sbjct: 635 DTIEAYVKHVAPDLAGRLSKHVGKNDVFTEQRISEQIAKALDRKVWLPSGGYLVIDRTEA 694 Query: 300 MTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 MT +D+NTG F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R Sbjct: 695 MTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRD 754 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL L + L +DR + V ++LGLV+MTRKR + + C C GRG + + + Sbjct: 755 LVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAYSSTCEHCRGRGLLVSTD 814 Query: 419 TVCYE 423 V + Sbjct: 815 PVTHA 819 >UniRef50_D1SD19 Ribonuclease, Rne/Rng family n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SD19_9ACTO Length = 1092 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 158/420 (37%), Positives = 242/420 (57%), Gaps = 8/420 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V T++A ++ G+L E ++ R + + GN+Y G+V VLP M+AAFVDIG Sbjct: 536 DRVMVVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDIG 595 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G R I + +R G ++VQV KDP+G KGARLT+ Sbjct: 596 RGRNAVLYAGEVNWDATGLEG------RARSIEQALRSGDSVLVQVTKDPIGHKGARLTS 649 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I L R+LV++P + G+S+++ +ER+RL+ V+ + + G I+RTAAEG E E Sbjct: 650 HIALSGRHLVYVPNGNASGISRKLPD-TERKRLRDVLKKLVPDGAGVIVRTAAEGASEDE 708 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 LA D L+ W + + LY E L RV+RD + + + ++ Y+ Sbjct: 709 LARDVKRLQAQWEDIQAKATEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDL 768 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + + S P++ ++L + G +F + ++ +I + L+RKV L SGG L+ID+TEAMT Sbjct: 769 VESYLSHVSPDLVARLRRHAGVADVFAEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMT 828 Query: 302 TVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 VD+NTG + G NL++T+ N+EA + I RQLRLR+LGGI++IDFIDM E +R V Sbjct: 829 VVDVNTGKYTGSGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELV 888 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L L + L +DR K V ++LGLV+MTRKR + C C GRG + E V Sbjct: 889 LRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGVIIHTEPV 948 >UniRef50_A0JXK2 Ribonuclease, Rne/Rng family n=4 Tax=Actinomycetales RepID=A0JXK2_ARTS2 Length = 1113 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 162/441 (36%), Positives = 255/441 (57%), Gaps = 10/441 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +++V ++ ++ G+L E + + + ++GN+Y G+V VLP M+AAFVDIG Sbjct: 382 DRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 441 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G++++ I ++ G ++VQV KDP+G KGARLT+ Sbjct: 442 RGRNAVLYAGEVNWDAVNLEGKQRR------IENALKSGDSVLVQVTKDPVGHKGARLTS 495 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I+LP RYLV++PG S G+S+++ ER RLK+++ + E G I+RTAAEG E E Sbjct: 496 QISLPGRYLVYVPGGSMTGISRKLPD-VERNRLKRILKDRLPEDAGVIVRTAAEGASEEE 554 Query: 182 LASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D L+ W + + + LYGE L +V+RD + + ++ V + Sbjct: 555 LTHDINRLRAQWEGIESQATSTKILAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAW 614 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + + + P++ +LE +T IF + ++ +I +AL+RKV L SGG L+ID+TEA Sbjct: 615 DTIEAYVTYVAPDLVGRLEKWTKDTDIFAAWRIDEQIHKALDRKVFLPSGGSLVIDRTEA 674 Query: 300 MTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 MT VD+NTG F G NL++T+ N+EA + + RQLRLR++GGII+IDFIDM E +R Sbjct: 675 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRD 734 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL + + L +DR K V ++LGLV+MTRKR + V +C C GRG V E Sbjct: 735 LVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGIVTHDE 794 Query: 419 TVCYEIMREIVRVHHAYDSDR 439 V + + HH ++ Sbjct: 795 PVEHRRANTVAAEHHVQRTEA 815 >UniRef50_B0VJP4 Ribonuclease G n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJP4_9BACT Length = 505 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 177/493 (35%), Positives = 284/493 (57%), Gaps = 10/493 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E++VNV P E RVA ++ L E+ +ER ++ IVGNIYKG V VLPGM AAF++IG Sbjct: 7 NTEIIVNVHPLEKRVAVLEDSRLVELFVERREQQNIVGNIYKGIVKDVLPGMGAAFIEIG 66 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRD-----ISELVRQGQDLMVQVVKDPLGTKG 116 L++ AFLH SDI+ + + V I +L++ GQ+++VQV K P+G+KG Sbjct: 67 LERTAFLHYSDIVMDFLDIYENALPRTKVNPEDSSQIDKLLKPGQEIVVQVHKGPIGSKG 126 Query: 117 ARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEG 176 ARLT I++P +YLV P + VS++I S++ER R++ +++ D G I+RT AEG Sbjct: 127 ARLTGQISIPGKYLVLFPNKDKIAVSRKIYSQAERSRIRNLLSGIKDPGYGLIVRTEAEG 186 Query: 177 VGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSR 236 E + ++ L + W + ++ K + ++ E AL ++RD +DR+ +D + Sbjct: 187 CEEDDFQTEYKALIKTWHLIEKQIKYAKAPVCVFEENALENYLIRDLFGENVDRLVIDDK 246 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 + ++ ++ PE+ + +E Y PIFD + +E +I+ L ++ L SGG + I+Q Sbjct: 247 NFAKRIISQLTDISPELINNIEIYREDSPIFDAWGIEKKIETVLHSRIYLPSGGNIKIEQ 306 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+ +D+NTG+F G N D+T+ TN+EA IARQ+RLR+L G+IIIDFIDM E + Sbjct: 307 TEALVAIDVNTGSFTGKTNYDETVRKTNLEAAAEIARQIRLRDLSGVIIIDFIDMVEEKY 366 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 + VL L++ L +DR K V F+ LGLVE+TRKR R ++ + CP C+G G + + Sbjct: 367 KNEVLEMLKKGLRRDRAKNKVYSFTELGLVEVTRKRMRNTLISNFSDPCPFCNGSGRILS 426 Query: 417 VETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIE 476 ++V I R + R + + +P + +K A +Q++ + Sbjct: 427 KDSVIMRIYRWLNRSDYFIKDKNLRIVVNPDLLNHIKQHNEDFTA-----YKEQIEFTSD 481 Query: 477 PLYNQEQFDVVMM 489 P +QF V ++ Sbjct: 482 PSIRIDQFKVYLL 494 >UniRef50_C4RPB5 Ribonuclease Rne/Rng n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RPB5_9ACTO Length = 1086 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 158/420 (37%), Positives = 242/420 (57%), Gaps = 8/420 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 + V T++A ++ G+L E ++ R + + GN+Y G+V VLP M+AAFVDIG Sbjct: 536 DRVMAVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDIG 595 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ T + G R I + +R G ++VQV KDP+G KGARLT+ Sbjct: 596 RGRNAVLYAGEVNWDTTGLEG------RARSIEQALRSGDSVLVQVTKDPIGHKGARLTS 649 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I L R+LV++P + G+S+++ +ER+RL+ V+ + + G I+RTAAEG E E Sbjct: 650 HIALSGRHLVYVPNGNASGISRKLPD-TERKRLRDVLKKLVPDGAGVIVRTAAEGASEDE 708 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 LA D L+ W + + LY E L RV+RD + + + ++ +Y Sbjct: 709 LARDVKRLQAQWEDIQAKVASGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGDESYGM 768 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + + S P++ ++ + G +F + ++ +I + L+RKV L SGG+L+ID+TEAMT Sbjct: 769 VESYLSHVSPDLVDRVRRHVGTSDVFATYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMT 828 Query: 302 TVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 VD+NTG + G NL++T+ N+EA + I RQLRLR++GGI++IDFIDM E +R V Sbjct: 829 VVDVNTGKYTGAGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELV 888 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L L + L +DR K V ++LGLV+MTRKR + C C GRG V E V Sbjct: 889 LRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGVVIHTEPV 948 >UniRef50_D1BDM1 Ribonuclease, Rne/Rng family n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BDM1_SANKS Length = 1265 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 155/419 (36%), Positives = 250/419 (59%), Gaps = 8/419 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V T++A ++ G+L E ++ ++++ + GN+Y GRV VLP M+AAF+D+G Sbjct: 686 ERSMIVRERNGRTQIAVLEDGVLVEHYVSQQSQASMAGNVYLGRVQNVLPSMEAAFIDVG 745 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G+ ++ I + ++ G ++VQV KDP+G KGARLT+ Sbjct: 746 KGRNAVLYAGEVNWDAAGMEGQPRR------IEQALKSGDSVLVQVTKDPIGQKGARLTS 799 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 +TL RYLV++PG G+S+++ +ER RLKK++ E E G I+RTAAEG E E Sbjct: 800 QVTLAGRYLVYVPGGGMTGISRKLPD-TERARLKKILREVVPETAGVIVRTAAEGASEEE 858 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L +D A L+ W + ++ K L GE LA RV+RD + + + V + Sbjct: 859 LRADIARLQGQWEAIEKKSKTASAPALLQGEPDLAIRVVRDIFNDDFTSLTVSGDGAWSE 918 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + E+ + P++ +++ +T + +F ++ ++ + ++RKV L SGG L+ID+TEAMT Sbjct: 919 ISEYVNALAPDLAERVKRWTSDKDVFAEARIDEQLAKGMDRKVWLPSGGSLVIDRTEAMT 978 Query: 302 TVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 VD+NTG F G L++T+ N+EA + I RQLRLR++GGII++DFIDM E +R V Sbjct: 979 VVDVNTGKFTGSGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLV 1038 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 L + + L +DR K V ++LGLV+MTRKR + + C C+GRG + E Sbjct: 1039 LRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCDHCNGRGFIVHDEP 1097 >UniRef50_A8M0Z2 Ribonuclease, Rne/Rng family n=2 Tax=Salinispora RepID=A8M0Z2_SALAI Length = 1058 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 161/465 (34%), Positives = 249/465 (53%), Gaps = 15/465 (3%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 + V T++A ++ G+L E ++ R + + GN+Y G+V VLP M+AAFVDIG Sbjct: 509 DRVMAVRQRGDRTQIAVLEDGVLVEHYVTRNSSTTMAGNVYLGKVQNVLPSMEAAFVDIG 568 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G R I + ++ G ++VQV KDP+G KGARLT+ Sbjct: 569 RGRNAVLYAGEVNWDATGLEG------RARSIEQALKSGDSVLVQVTKDPIGHKGARLTS 622 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 + L R+LV++PG + G+S+++ ER RL+ + + E G I+RTAAEG E E Sbjct: 623 HVALSGRHLVYVPGGNTSGISRKLPDN-ERRRLRDALKKLVPEGAGVIVRTAAEGASEDE 681 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 LA D L+ W + + + LY E L RV+RD + + + ++ Y+ Sbjct: 682 LARDVKRLQAQWEDIQAKAGKGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEGAYDM 741 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + + S P++ ++L + G +F + ++ +I + L+RKV L SGG+L+ID+TEAMT Sbjct: 742 VESYLSHVSPDLVARLRRHVGTVDVFTEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMT 801 Query: 302 TVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 VD+NTG + G NL++T+ N+EA + I RQLRLR++GGI++IDFIDM E +R V Sbjct: 802 VVDVNTGKYTGAGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELV 861 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L L + L +DR K V ++LGLV+MTRKR + C C GRG + E V Sbjct: 862 LRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGLIVHTEPV 921 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEI 465 + +R AS A + E Sbjct: 922 P-------EKPRTGGTGERVKAVASAETGTAPRRRTRKGSVTAER 959 >UniRef50_B0TYI3 Ribonuclease E n=18 Tax=Francisella RepID=B0TYI3_FRAP2 Length = 890 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 155/492 (31%), Positives = 258/492 (52%), Gaps = 10/492 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M L+ + + ETR+A +D G L ++ IE R NIYKG +SR+ P + A FV+ Sbjct: 1 MKKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK FL ++ + + +I+ L+ +GQ+L+VQ+ K+ G KGA LT Sbjct: 61 GEDKNGFLPFKEVSEYYL------KDVPNGENIAHLLSEGQELIVQIDKEERGDKGAALT 114 Query: 121 TDITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 T ITL Y+V +P G+S+R+E E +RE+LKK + + + I RTA Sbjct: 115 TFITLAGSYMVLLPNNPDGGGISRRVEGE-DREKLKKYLKDLNIPKNMSVIARTACVECS 173 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 EL D L +W + + + + L+ E + R +RD ++ I VDS+ Sbjct: 174 FEELKHDFDTLVELWDSIFKAYHKIKKPDLLHKESDIIVRTVRDHLKEDVKEIIVDSKEC 233 Query: 239 YEALLEFTSEYIPEMT-SKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 YE + +K++ Y PIF F ++ +I+ A +R++ L SGG ++ID T Sbjct: 234 YEDVKRQLGLLRQSFDINKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTT 293 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+ +D+N+ +++ T F TN+EA + +ARQLR+R+LGG++I+DFIDM+ +R Sbjct: 294 EALVAIDVNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNR 353 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 ++V L +AL +D+ + ++ S LGLVE++R+R SI + +CP C G G +KT Sbjct: 354 KQVEEKLMEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTT 413 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 + I+R+I D++ V +A + E+ S+ E+E +V + Sbjct: 414 QATALTILRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIERISEVKVMLIPNF 473 Query: 478 LYNQEQFDVVMM 489 +F + + Sbjct: 474 NMESPKFQMQRI 485 >UniRef50_Q1MQA2 Ribonucleases G and E n=2 Tax=Desulfovibrionaceae RepID=Q1MQA2_LAWIP Length = 666 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 159/491 (32%), Positives = 255/491 (51%), Gaps = 6/491 (1%) Query: 2 TAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 ++L++V P E VA G L E IE I GNIYKG ++ + +QAAF++ Sbjct: 176 NKKMLISVIPGEQVEVAISSDGQLFEYFIEMNHHAKIRGNIYKGVINNIDANLQAAFINY 235 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G K FL ++ P E K I ++++ GQ+++VQVVK+P G KGA LT Sbjct: 236 GNTKNGFLQIDEVHPEYYLQPHEPTKLKKYPPIQKVLKAGQEILVQVVKEPTGNKGAFLT 295 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE-QGGFIIRTAAEGVGE 179 T ++L R+LV PG +G+S+++E E ER RL++++ G I+RT + G + Sbjct: 296 TWLSLAGRFLVLTPGQEQIGISRKVEDEEERTRLRELIKGLDPGSGLGAIVRTVSIGTSK 355 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D ++LKRVW ++ ++ ++ +Y E LA R +RD+ ++ I VD T Sbjct: 356 TTLQKDLSFLKRVWREIRKKATTEKSPCLIYEEPGLATRAVRDYLADDITEIWVDDPETK 415 Query: 240 EALLEFTSEYIPEMTSKLEHYTGR-QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 +A+ E T+ P T + Y +P+++ F + +I + R+V + SGG L+ DQTE Sbjct: 416 QAIQEVTTLLFPRKTKLVHLYQNNNEPLWEHFKLNKQIIQVHSREVIMPSGGRLVFDQTE 475 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+ +DIN+G G N + + TN+EA IA+QLRLR++GG I+IDFI+M H R Sbjct: 476 ALMAIDINSGRIAGKTNFESMAYRTNMEAAATIAQQLRLRDIGGQIVIDFIEMKEPAHCR 535 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V L+ A+ DR + V S+ GL+++ R+R S + CP C G G + +E Sbjct: 536 DVEKELQLAMKADRARHDVGKMSSFGLLQVVRQRIGSSAISISQETCPYCQGTGQRRNIE 595 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYAS---PAVAEALKGEESHSLAEVEIFVGKQVKVQI 475 + +REI + + Y + L + + L +E G + ++I Sbjct: 596 WQAIQTLREIHKKMQQTVTAGKHEYIHTLDQELGLYLLNNKRNRLIALEQEFGIHLDIRI 655 Query: 476 EPLYNQEQFDV 486 L E D+ Sbjct: 656 SLLQKIENSDL 666 >UniRef50_D1BV45 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycetales RepID=D1BV45_XYLCX Length = 1043 Score = 510 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 159/422 (37%), Positives = 248/422 (58%), Gaps = 9/422 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 + ++V T++A ++ G+L E ++ ++++ +VGN+Y GRV VLP M+AAFVD+G Sbjct: 552 SRSMIVRERDGRTQIAVLEDGVLVEHYVSQQSQSSMVGNVYLGRVQNVLPSMEAAFVDVG 611 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G + ++ I + ++ G ++VQV KDP+G KGARLT+ Sbjct: 612 KGRNAVLYAGEVNWDAAGLDGGQPRR-----IEQALKSGDSVLVQVTKDPIGHKGARLTS 666 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 +TL RYLV +PG G+S+++ ER RLKKV+ + E G I+RTAAEG E E Sbjct: 667 QVTLAGRYLVLVPGGGMTGISRKLPD-VERNRLKKVLRDIVPEGAGVIVRTAAEGASEEE 725 Query: 182 LASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L +D L+ WT + + R L GE LA RV+RD + + + V + Sbjct: 726 LRADVERLQNQWTGITTKAGRASTSAPALLQGEPDLAIRVVRDIFNDDFSSLIVQGDGAW 785 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + + E P++ ++ +T +F + V+ ++ + ++RKV L SGG L+ID+TEA Sbjct: 786 QEVAGYVEELAPDLRERVTSWTENTDVFSVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEA 845 Query: 300 MTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 MT +D+NTG F G L++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R Sbjct: 846 MTVIDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRD 905 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL L + L +DR K V ++LGLV+MTRKR + + C C GRG + E Sbjct: 906 LVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCKGRGFIVHAE 965 Query: 419 TV 420 + Sbjct: 966 PI 967 >UniRef50_B8DIL9 Ribonuclease, Rne/Rng family n=3 Tax=Desulfovibrio RepID=B8DIL9_DESVM Length = 491 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 149/481 (30%), Positives = 252/481 (52%), Gaps = 9/481 (1%) Query: 4 ELLVNVTPSE-TRVAYIDGG----ILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFV 58 + ++V P E VA + G ++E ++E + GNIY+G ++ V +QAAFV Sbjct: 9 RMFISVLPGEQVEVALAEEGAKENQVKEYYVEMVHQAKTKGNIYRGIINNVDTNLQAAFV 68 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 + G DK FL ++ P + K + ++++ GQ+++VQVVK+P G+KGA Sbjct: 69 NYGADKNGFLQIDEVHPEYYNTPHDATKGKKYPLMQKVLKAGQEVLVQVVKEPTGSKGAF 128 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCD-EQGGFIIRTAAEGV 177 LTT +++P R+LV PG +GVS+++E + ER RL++++ G I+RT + G Sbjct: 129 LTTYLSMPGRFLVLTPGREQIGVSRKVEDDEERGRLREMLEGLNPGPGLGVIVRTVSAGT 188 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 + L D +LKR+W + ++ +Y E LA R +RD+ ++ + VD Sbjct: 189 SKTTLQRDLQFLKRLWKDIRKKGTEESAPCLIYKEPDLASRAVRDYLSDDVAEVWVDDEH 248 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQP-IFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 T + E++S P S ++ Y + +++ F ++ ++++ R+V L SGG L+ DQ Sbjct: 249 TATLIEEYSSLLFPRKGSLVKVYKDQTRTLWERFGIQRQLEQIYSREVTLPSGGRLVFDQ 308 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+ +DIN+G G N + TN+EA + IA+QL+LR++GG ++IDFI+M + +H Sbjct: 309 TEALMAIDINSGKISGKTNFESMALRTNMEAAETIAQQLKLRDIGGQVVIDFIEMRDRNH 368 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 R V L A+ DR + V S GL+++ R+RT S + CP C G G + Sbjct: 369 WREVEKILRNAMKNDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCKGSGLRRN 428 Query: 417 VETVCYEIMREIVRVHHAYDSDRFL--VYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ 474 +E + +REI R A VA L + L ++E G + ++ Sbjct: 429 MEWQSLQALREIHRQLRALPHGTVTFLFETGAEVAMHLLNHKRERLLDLERQFGVHLDIR 488 Query: 475 I 475 Sbjct: 489 P 489 >UniRef50_B8HA23 Ribonuclease, Rne/Rng family n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HA23_ARTCA Length = 1151 Score = 509 bits (1312), Expect = e-143, Method: Composition-based stats. Identities = 164/439 (37%), Positives = 256/439 (58%), Gaps = 10/439 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +++V ++ ++ G+L E + + + ++GN+Y G+V VLP M+AAFVDIG Sbjct: 432 DRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 491 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G++++ I ++ G ++VQV KDP+G KGARLT+ Sbjct: 492 RGRNAVLYAGEVNWEAVNLEGKQRR------IENALKSGDTVLVQVTKDPVGHKGARLTS 545 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I+LP RYLV++PG S G+S+++ ER RLK+++ + EQ G I+RTAAEG E E Sbjct: 546 QISLPGRYLVYVPGGSMTGISRKLPD-VERNRLKRILKDRLPEQAGVIVRTAAEGASEEE 604 Query: 182 LASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D L+ W + + + LYGE L +V+RD + + ++ V + Sbjct: 605 LTHDINRLRAQWEGIESQSSSTKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAW 664 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + + + + P++ +LE +T Q IF + ++ +I +ALERKV L SGG L+ID+TEA Sbjct: 665 DTIEAYVTYVAPDLVGRLEKWTKDQDIFAAWRIDEQIHKALERKVFLPSGGSLVIDRTEA 724 Query: 300 MTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 MT VD+NTG F G NL++T+ N+EA + + RQLRLR++GGII+IDFIDM E +R Sbjct: 725 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRD 784 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL + + L +DR K V ++LGLV+MTRKR + V +C C GRG V + Sbjct: 785 LVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGVVTHDD 844 Query: 419 TVCYEIMREIVRVHHAYDS 437 V + + H + S Sbjct: 845 PVEHRRANIVAAEQHVHRS 863 >UniRef50_A6GBN9 Ribonuclease G n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBN9_9DELT Length = 507 Score = 509 bits (1312), Expect = e-143, Method: Composition-based stats. Identities = 233/492 (47%), Positives = 314/492 (63%), Gaps = 9/492 (1%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 +++N ETRVA I+ GIL E+ IERE RGIVGN+YKG++ RVLPGMQAAFVDIG DK Sbjct: 6 IVINADGPETRVALIENGILTELFIERERERGIVGNVYKGKILRVLPGMQAAFVDIGEDK 65 Query: 65 AAFLHASDIMPHTECV-------AGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGA 117 AAFL+A DI G ++ V +I++LV GQ+++VQVVKDP+ TKGA Sbjct: 66 AAFLYAGDIASQKPGEKVDKVDKNGVPKRGGKVSNIADLVHPGQEILVQVVKDPISTKGA 125 Query: 118 RLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGV 177 R+TT I+LP R +VFMP SHVG+S+RI SE +R RL+++V E + GFI+RT A Sbjct: 126 RITTYISLPGRNVVFMPTVSHVGISRRINSERQRRRLRRLVDEMRPKGSGFIVRTVARHA 185 Query: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 A++ + YL R+W + ++ + LY +L L RV+RD + R+ VD R Sbjct: 186 SSAQVRAGMDYLIRLWANIKANERLHRAPVLLYRDLDLMLRVVRDNLSPDYARVIVDDRA 245 Query: 238 TYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 YE L F ++PE ++E ++GRQ IFD + +E EI RALERKVELKSGG L+ DQ Sbjct: 246 AYERLKRFADAFLPEYADRIELFSGRQGIFDSYGIELEIDRALERKVELKSGGSLVFDQG 305 Query: 298 EAMTTVDINTGAFVG--HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 EA+T +D+NTG FVG + L+ TI TN+EA IA QLRLRN+GG+IIIDFIDM+ E Sbjct: 306 EALTAIDVNTGKFVGSKGKTLEQTITQTNLEAADEIAEQLRLRNVGGLIIIDFIDMDRES 365 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 +RR+V L+ AL +DR K + S +GLVEM+RKRTRES+E L C C G+G K Sbjct: 366 NRRKVYRRLQDALRRDRAKAHITKISEMGLVEMSRKRTRESLERRLAITCEVCGGKGYHK 425 Query: 416 TVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQI 475 + T+CYEI+R+I R + V A P VAE + G E +L V K + VQ Sbjct: 426 SPSTICYEILRQIRREGEHLAGEVISVTAHPDVAELMNGAERSALDHAVKRVHKAIDVQG 485 Query: 476 EPLYNQEQFDVV 487 ++ E+F++ Sbjct: 486 RKGFHPEKFEIR 497 >UniRef50_D0LAJ7 Ribonuclease, Rne/Rng family n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAJ7_GORB4 Length = 1123 Score = 506 bits (1303), Expect = e-142, Method: Composition-based stats. Identities = 163/440 (37%), Positives = 246/440 (55%), Gaps = 18/440 (4%) Query: 11 PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHA 70 T+VA ++ G+L E + +VGNIY GRV VLPGM+AAFVDIG + L+A Sbjct: 509 EDYTQVAVLEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYA 568 Query: 71 SDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYL 130 ++ + G R I + ++ G +++VQV KDP+G KGARLTT I+L RYL Sbjct: 569 GEVNWDAAGLDG------GSRKIEQALKPGDNVLVQVSKDPVGHKGARLTTQISLAGRYL 622 Query: 131 VFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLK 190 V++PG S G+S+++ ER+RLK+++A+ G IIRTA+EGV EL +D A L+ Sbjct: 623 VYVPGGSSTGISRKLPD-VERKRLKQILAKLVPADAGVIIRTASEGVSAEELGADIARLE 681 Query: 191 RVWTKVMERKKRPQT------RYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 W + E + + LY E L RV+RD + + ++ V+ + + Sbjct: 682 AKWRSIDESVTQAKKNSGSAGPKALYEEPDLLVRVVRDLFNEDFKKLVVEGAKAWNLVEG 741 Query: 245 FTSEYIPEMTSKL----EHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + P++ ++ + + F + ++ ++ +AL+RKV L SGG LII+ TEAM Sbjct: 742 YVGSVAPDLMDRVEKFEKPHADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAM 801 Query: 301 TTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 T VD+NTG F G NL++T+ N+EA + I RQ+RLR++GG+II+DFIDM E +R Sbjct: 802 TVVDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDL 861 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 VL L +AL++DR + V+ ++LGLV+MTRKR + C TC GRG + Sbjct: 862 VLRRLTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTTCGGRGVIVHANP 921 Query: 420 VCYEIMREIVRVHHAYDSDR 439 V + S R Sbjct: 922 VEVRSEEAGRVEGGSKRSRR 941 >UniRef50_Q6AIU3 Probable RNAse E n=1 Tax=Desulfotalea psychrophila RepID=Q6AIU3_DESPS Length = 883 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 162/495 (32%), Positives = 263/495 (53%), Gaps = 10/495 (2%) Query: 4 ELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 LL+N P E R+A ++ G L+ IH+ R NIYK +V V +QAAFVD G Sbjct: 380 RLLINAEEPEECRLALLEDGRLESIHVSTVTRAQTKNNIYKAKVVAVEANLQAAFVDYGT 439 Query: 63 DKAAFLHASDIMPHTE-------CVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTK 115 K FL S+I P E++++ I +++ +GQ+L+VQVVK+ +G K Sbjct: 440 VKNGFLPFSEIHPEYYRADLSESARKNVEERRWRRLKIEDVMARGQELLVQVVKEEVGKK 499 Query: 116 GARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAA 174 GA +TT ++LP R +V MPG+ G+S++I E R +L+ + E G+I+RTA+ Sbjct: 500 GANMTTYLSLPGRCVVLMPGSDSAGISRKIVGEERRSQLRDTMRSLGIPEGTGWIVRTAS 559 Query: 175 EGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVD 234 + E LA D YL ++W V E+ + + +Y + R LR+ D + I VD Sbjct: 560 VDINEEALARDVTYLLKLWEDVREKGQEIKDVGLIYEDHRSVMRFLREHYDPSIQEILVD 619 Query: 235 SRLTYEALLEFTSEYIPEMTS-KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLI 293 + L E + EF S + K+ + G +PIF+ F VE++I+ + +V L SGG ++ Sbjct: 620 APLALEQVNEFVSMLPANQQNVKVRLHKGSRPIFNQFSVEDQIESIYQPQVSLPSGGSIV 679 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 ID TEA+ +D+N+G+ +N D++IF N+EA ARQLRLR+LGG++++DFIDM N Sbjct: 680 IDPTEALVAIDVNSGSTSKGKNFDESIFQANMEAASEFARQLRLRDLGGLVVVDFIDMRN 739 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGT 413 + H V ++ A+ +D+ K S GL++++R++ IE C C GRG Sbjct: 740 KKHINAVEKQVKIAMKRDKAKVDFTRISKFGLMQISRQKLGSPIEAGAYRVCQHCKGRGI 799 Query: 414 VKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKV 473 V+ VET+ +R I + + VA L + + E+E ++ + Sbjct: 800 VRAVETLALFYLRRIQTGASRKPVVKIECHFPLDVASYLLNNKRQEITEMENNNEVEIMI 859 Query: 474 QIEPLYNQEQFDVVM 488 +E + + ++V Sbjct: 860 VVESRFKPAENEIVF 874 >UniRef50_C7QYR2 Ribonuclease, Rne/Rng family n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QYR2_JONDD Length = 1018 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 161/423 (38%), Positives = 246/423 (58%), Gaps = 8/423 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V T++A ++ GIL E ++ ++ + I GN+Y GRV VLP M+AAFVDIG Sbjct: 447 DRSMVVREVAGRTQIAVLEDGILVEHYVSQQEQASIAGNVYLGRVQNVLPSMEAAFVDIG 506 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G+ ++ I E ++ G ++VQV KDP+G KGARLT+ Sbjct: 507 KGRNAVLYAGEVNWDVHGIEGQPRR------IEEALKSGDSVLVQVTKDPIGHKGARLTS 560 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ITL RYLV++PG G+S+++ +ER RLK+++ E DE G I+RTAAEG E E Sbjct: 561 QITLAGRYLVYVPGGGMTGISRKLPD-TERARLKRILKELVDEGSGVIVRTAAEGASETE 619 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L +D LK+ W + +++K L GE LA RV+RD + + ++ V + Sbjct: 620 LRADVERLKKQWAAIEKKRKNANAPALLQGEPDLAIRVVRDIFNDDFTQLSVQGDQAWGE 679 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + E+ + P++ +K+ +T IF ++ ++ + L+RKV L SGG L+ID+TEAMT Sbjct: 680 ISEYVGDLAPDLANKMSRWTSEDDIFAAARIDEQLAKGLDRKVYLPSGGSLVIDRTEAMT 739 Query: 302 TVDIN-TGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+N L++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R V Sbjct: 740 VIDVNTGKFTGTGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLV 799 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L L + L +DR K V ++LGLV+MTRKR + + C C GRG + V Sbjct: 800 LRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLIEAFSTACDHCSGRGYTIHTDPV 859 Query: 421 CYE 423 Sbjct: 860 ERH 862 >UniRef50_B5JNK0 Ribonuclease, Rne/Rng family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNK0_9BACT Length = 582 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 177/506 (34%), Positives = 292/506 (57%), Gaps = 21/506 (4%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRG-IVGNIYKGRVSRVLPGMQAAFVDIG 61 EL++N P E RV + GIL + IER IVG I+KGR+ + PG++AAFVDIG Sbjct: 68 RELIINSEPLEIRVGQLVDGILDKFDIERRHSAQRIVGGIFKGRIKNLDPGLKAAFVDIG 127 Query: 62 LDKAAFLHASDIMPHTECVA-----------GEEQKQFTVRDISELVRQGQDLMVQVVKD 110 + K AFLH DI P + G++Q + +++I G ++++Q+ K Sbjct: 128 MPKNAFLHYWDIQPQEADSSIEVVRVNSSRKGKKQAKIPLKEIPNHYPIGTEIVIQITKG 187 Query: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGGFI 169 P+GTKG R TT++++P R++V +P + G+S++IE ER+RLKK++ + E G I Sbjct: 188 PIGTKGPRSTTNLSIPGRFIVLVPHSDQCGISRKIEDNKERQRLKKIIRDLTIPEGMGII 247 Query: 170 IRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELD 229 +RTA EG D L + W K+ ++ + LY E LA+R +RDF ++D Sbjct: 248 VRTAGEGKKARYFVRDLHILLQTWEKIQKKMDSARAPACLYKEPDLAERTVRDFLTEDID 307 Query: 230 RIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSG 289 R+ +D+ + + E ++ TSK++ Y PIF+ +++E +I++ +R+V L SG Sbjct: 308 RVLIDNEEDHGRISETVAQISKRSTSKIQLYQDSIPIFERYNIEKQIEQTFQRQVPLPSG 367 Query: 290 GYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFI 349 G ++I++TEA+ +D+NTG+ N +DTIF N EA + +ARQ+RLRN+GG+IIIDFI Sbjct: 368 GAIVIEETEALIAIDVNTGSHKNRGNENDTIFQVNCEAAEEVARQIRLRNIGGLIIIDFI 427 Query: 350 DMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCH 409 DM HR +L + A+S D+ KT + S LG+++MTR+R +ES+ L +CP C Sbjct: 428 DMKQRRHRNAILSRMRDAMSSDKAKTHILPISPLGIMQMTRQRMQESVSSGLYTDCPYCR 487 Query: 410 GRGTVKTVETVCYEIMREIVRVHHAYDSD--------RFLVYASPAVAEALKGEESHSLA 461 G+G VK+ TV E+ R++ + + + + +PA+ + L+ E++ L Sbjct: 488 GKGIVKSGTTVSVELQRKLSGIIRRARNRTPDLAKPIKLRILVNPAIIDRLREEDADLLI 547 Query: 462 EVEIFVGKQVKVQIEPLYNQEQFDVV 487 +E Q+ + +P ++ E + V+ Sbjct: 548 SLEKDYNAQLTFRADPNFHVENYRVI 573 >UniRef50_C7NH23 RNAse G n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NH23_KYTSD Length = 959 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 170/420 (40%), Positives = 253/420 (60%), Gaps = 7/420 (1%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++V + T+V ++ G+L E +I+R+ + +VGN+Y GRV VLP M+AAFVDIG Sbjct: 316 RTMVVRESAEYTQVGVLEDGVLVEHYIDRQQQTTMVGNVYLGRVQNVLPSMEAAFVDIGK 375 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + L+A ++ + EQK+ I ++ GQ ++VQV KDP+G KGARLT Sbjct: 376 GRNGVLYAGEVNWDAAGLPKGEQKR-----IESALQPGQPVLVQVTKDPIGHKGARLTGQ 430 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I+LP RYLV++PG + G+S+++ +ER RLKK++ + G I+RTAAEG EAEL Sbjct: 431 ISLPGRYLVYVPGNTTTGISRKLPD-TERARLKKILKDVVPADAGVIVRTAAEGAAEAEL 489 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 +D L W ++ + + ++GE L RV+RD + + ++ V +E++ Sbjct: 490 RADVERLTTQWERIAAAQAKGSAPTLVHGEPDLTVRVIRDVFNEDFTKLVVSGPTAWESV 549 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + P++T KLE + G Q +F+ +E +I +A++RKV L SGG LI D+TEAMT Sbjct: 550 TSYIDAVAPDLTPKLERWEGEQDVFEHHRIEEQIAKAMDRKVWLPSGGSLIFDRTEAMTV 609 Query: 303 VDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 VD+NTG FVG NL++T+ NIEA + I RQLRLR++GGII++DFIDM E +R V+ Sbjct: 610 VDVNTGKFVGSGGNLEETVTKNNIEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVV 669 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 L + L++DR K V ++LGLV+MTRKR + V C C G G V V Sbjct: 670 RRLVECLARDRTKHQVAEVTSLGLVQMTRKRVGSGLVEVYGETCEHCDGHGLVVQDAPVA 729 >UniRef50_D2NSV3 Ribonuclease G and E n=2 Tax=Rothia mucilaginosa RepID=D2NSV3_9MICC Length = 1288 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 163/449 (36%), Positives = 255/449 (56%), Gaps = 10/449 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++LV ++ ++ G+L E + + + ++GN+Y G+V VLP M+AAFVDIG Sbjct: 418 DRQMLVRQKDGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIG 477 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G + I ++ G ++VQV KDP+G KGARLT+ Sbjct: 478 RGRNAVLYAGEVNWDVTGLDGAPR------KIENALKPGDSVLVQVTKDPIGHKGARLTS 531 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ++LP R+LV++PG S G+S+++ +ER RLKK++ + E G I+RTAAEG E E Sbjct: 532 QVSLPGRFLVYVPGGSMTGISRKLPD-TERARLKKILKDKLPEGAGVIVRTAAEGASEEE 590 Query: 182 LASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D L+ W ++ E+ K + LY E L + +RD + + + V + Sbjct: 591 LTHDINRLRAQWEEIQEKAKSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTAMIVQGENAW 650 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 +++ + + P++ S+L+ + G +FD + + ++ +AL+RKV L SGG L+ID+TEA Sbjct: 651 DSIEAYVTYVAPDLVSRLQQWDGDDDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEA 710 Query: 300 MTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 MT VD+NTG F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R Sbjct: 711 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRD 770 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL L + L +DR K V ++LGLV+MTRKR + V C C GRG V + Sbjct: 771 LVLRRLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEPCEHCAGRGLVVHDQ 830 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPA 447 + +H +DR A+ Sbjct: 831 PLSGRSGGASDYIHRHERNDRKRSRAAAR 859 >UniRef50_C8XF15 Ribonuclease, Rne/Rng family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XF15_NAKMY Length = 1080 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 161/427 (37%), Positives = 245/427 (57%), Gaps = 14/427 (3%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 + V +VA ++ GIL E + + ++G+++ G+V VLP M+AAFVDIG Sbjct: 367 DRVMAVRQRGELAQVALLEDGILVEHFVSQTGADSLIGSVFLGKVQNVLPSMEAAFVDIG 426 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A ++A ++ + G R I + G ++ QV KDP+G KGARLTT Sbjct: 427 RGRNAVIYAGEVNWDAAGLGG------KARRIESALSSGDTILAQVSKDPVGHKGARLTT 480 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I+LP R+LV++PG G+S+++ +ER+RLK ++ E G IIRTAAEGV E E Sbjct: 481 QISLPGRFLVYVPGGGATGISRKLPD-TERKRLKAILDRIVPEDAGVIIRTAAEGVSEEE 539 Query: 182 LASDAAYLKRVWTKVMERKK-RPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL--- 237 LA D LK W ++ R + + LY E +V+RD +++++R+ VD Sbjct: 540 LARDVERLKAQWEEISRRAQAKGSAPTLLYAEPGTLIKVVRDLFNSDINRLVVDGDAGND 599 Query: 238 -TYEALLEFTSEYIPEMTSKLEHYT-GRQPIFDLFDVENEIQRALERKVELKSGGYLIID 295 + + ++ + PE+ +L + Q +F + ++ +I +ALERKV L SGG L+ID Sbjct: 600 TVWGPVSDYVNAVAPELADRLVRWDHDGQDVFANYRIDEQIAKALERKVHLPSGGSLVID 659 Query: 296 QTEAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 +TEAMT VD+NTG + G NL++T+ N+EA + I RQLRLR++GGII++DFIDM E Sbjct: 660 RTEAMTVVDVNTGKYTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLE 719 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 +R V+ L +AL +DR + V ++LGLV+MTRKR + CP C GRG V Sbjct: 720 SNRELVMRRLTEALGRDRTRHQVAEVTSLGLVQMTRKRMGTGLVEAFSEPCPHCGGRGIV 779 Query: 415 KTVETVC 421 + Sbjct: 780 LHEMPLA 786 >UniRef50_B2KEH9 Ribonuclease, Rne/Rng family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEH9_ELUMP Length = 483 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 182/488 (37%), Positives = 291/488 (59%), Gaps = 19/488 (3%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E+L N + ETRVA ++ G L E+ ER IVGNIYK V VLPG+ +AFV+IG + Sbjct: 11 EVLANTSFEETRVAIVENGRLAELMWERRGAVNIVGNIYKATVENVLPGISSAFVNIGYE 70 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 K A+L+ SD++ ++I +++++GQ++MVQVVKD +GTKG ++T D+ Sbjct: 71 KNAYLYISDVLGD------------EKKNIEKVIKKGQEIMVQVVKDAIGTKGMKITMDV 118 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE---QGGFIIRTAAEGVGEA 180 TLP R+LV P S VGVS+ IE ER +L +V E ++ G I+RT AE + Sbjct: 119 TLPGRFLVLTPHQSFVGVSKNIEDNQERHKLNDMVQELAEKYLHGMGCIVRTEAEEATKD 178 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 EL + YL R W ++ + + + L+ ++ +V RD ++ +D++ YE Sbjct: 179 ELEREVKYLYRQWQSILNKFETLPSPSILHEDMDAVLQVSRDILSENIEVYYLDNKKDYE 238 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +L+F S+ PE+ K++ Y G+ PIF+ F++E+EI + K+ L +GG +II + E++ Sbjct: 239 NVLDFVSKNSPELKDKIKLYKGKTPIFEAFNIESEIDNLRKTKISLPNGGSIIIQEAESL 298 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+NTG F G ++ ++T+ TNIEA Q +A QLRLRN+GGI++IDFIDM +R RV Sbjct: 299 CAIDVNTGKFTGSKSQEETVTQTNIEAAQEVAHQLRLRNIGGIVVIDFIDMKKASNRHRV 358 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 + +L A+ +DR K + + LGLVEMTR+R +ES +L ECP CHG G V + E++ Sbjct: 359 VEALADAVHRDRAKIRILPITRLGLVEMTRERKKESTGSLLTEECPQCHGSGRVLSAESM 418 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 +I REI + + P +A+ +K ++S +E + + +K+Q + + Sbjct: 419 RIKIQREIYDLTQGRPGGNLRIVLHPELADQIKHQQSV----IEQNIHRSMKIQSDAQLS 474 Query: 481 QEQFDVVM 488 E + +V+ Sbjct: 475 WEDYKIVL 482 >UniRef50_D0WNB8 Putative S1 RNA binding domain protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WNB8_9ACTO Length = 940 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 161/421 (38%), Positives = 248/421 (58%), Gaps = 9/421 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E+L+ ++A ++ +L E ++ R + +VGN+Y GRV VLP M+AAFVDIG Sbjct: 328 KREMLIREQDGLNQIAVLEDDVLVEHYVARHTQVSMVGNVYLGRVQNVLPSMEAAFVDIG 387 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G ++ I + ++ G ++VQV KDP+G KGARLT Sbjct: 388 KGRNAVLYAGEVNWEAAGLEGRPRR------IEQALKSGDTVVVQVTKDPIGHKGARLTA 441 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ITL R+LV +P + G+S+++ + ER+RLK+++ E + G I+RTAAEG E + Sbjct: 442 QITLAGRHLVLVPSGAMTGISRKLPDK-ERQRLKRLLREIVPAEHGVIVRTAAEGTSEDQ 500 Query: 182 LASDAAYLKRVWTKVMERKKRPQ-TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L +D L + W + + K + L GE LA RV+RD + + +++ + Sbjct: 501 LRADVERLAKTWQDIQTKAKNTKGAPMLLKGEPELAVRVVRDIFNEDFQSLKIQGAKAWR 560 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + E+ +E PE++ +LEH+TG IF V+ ++ +A +RKV L SGG L+ID+TEAM Sbjct: 561 TISEYVAELSPELSQRLEHWTGASDIFASHRVDEQLAKAFDRKVWLPSGGTLVIDRTEAM 620 Query: 301 TTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 T +D+NTG F G L++T+ N+EA + I RQLRLR++GGII+IDFIDM E +R Sbjct: 621 TVIDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANREL 680 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 VL L + L +DR + V ++LGLV+MTRKR + + C C GRG + Sbjct: 681 VLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSTVCEACEGRGYIIHSNP 740 Query: 420 V 420 V Sbjct: 741 V 741 >UniRef50_C5CAZ2 Ribonuclease, Rne/Rng family n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CAZ2_MICLC Length = 1091 Score = 497 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 157/426 (36%), Positives = 243/426 (57%), Gaps = 14/426 (3%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++LV ++A ++ G+L E + + ++GN+Y G+V VLP M+AAFVDIG Sbjct: 227 DRKMLVRQRDQRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDIG 286 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G+ + I ++ G ++VQV KD +G KGARLT+ Sbjct: 287 RGRNAVLYAGEVNWDAAQLDGKPR------KIENALKSGDTVLVQVTKDSVGHKGARLTS 340 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ++LP RYLV++PG S G+S+++ ER RLKK++ ++ + G I+RTAAEG E E Sbjct: 341 QVSLPGRYLVYVPGGSMTGISRKLPD-VERSRLKKILKDHLPQDAGVIVRTAAEGTSEQE 399 Query: 182 LASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L +D L+ W + E+ + LY E L + +RD + + + V T+ Sbjct: 400 LQNDINRLRAQWEGIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEATW 459 Query: 240 EALLEFTSEYIPEMTSKLEHY----TGRQPIFDLFDVENEIQRALERKVELKSGGYLIID 295 + + + + P + +L H+ + ++ V+ ++ +ALERKV L SGG L+ID Sbjct: 460 DNIEAYVTYVAPHLLGRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVID 519 Query: 296 QTEAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 +TEAMT VD+NTG F G NL++T+ N+EA + I RQLRLR++GGII+IDFIDM E Sbjct: 520 RTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLE 579 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 +R VL L + L +DR K V ++LGLV+MTRKR + V C C GRG + Sbjct: 580 ANRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGIL 639 Query: 415 KTVETV 420 + Sbjct: 640 IQDTPI 645 >UniRef50_C4PNX0 Ribonuclease E n=17 Tax=Chlamydiales RepID=C4PNX0_CHLTZ Length = 512 Score = 497 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 168/500 (33%), Positives = 285/500 (57%), Gaps = 15/500 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++L+N+ E R A++ G L ++ IER+ R + GNIY+GRV+ +L +Q+AF++I Sbjct: 1 MENDILLNIESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNILRNIQSAFINI 60 Query: 61 GLDKAAFLHASDIMPHTECVA------------GEEQKQFTVRDISELVRQGQDLMVQVV 108 + F+H SD++ +++ + ++ + I EL++ ++VQVV Sbjct: 61 DERENGFIHISDVLENSKKFEQMFDIDSDADHAEPQPEETSEAPIEELLKLDSPVLVQVV 120 Query: 109 KDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY-CDEQGG 167 K+P+GTKGARLT++I++P RYLV +P + H GVS++IE R++LK+++ + + G Sbjct: 121 KEPIGTKGARLTSNISIPGRYLVLLPNSPHRGVSRKIEDPLMRDQLKQLIRSFEMPQNMG 180 Query: 168 FIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAE 227 I RTA+ L ++A L W ++E+ P LY E + ++ + D Sbjct: 181 LICRTASISASTETLINEAQNLLNTWQSILEKFYSPDHPSLLYEETDILKKAVMTCVDKS 240 Query: 228 LDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELK 287 R+ +D TY+ +Y P+ T K+E+Y P+F+ F++E EI RA +RK+ L Sbjct: 241 YKRLLIDDYATYQKCKRLLGKYSPDTTVKIEYYRDSVPMFERFNIEKEIDRATKRKIWLS 300 Query: 288 SGGYLIIDQTEAMTTVDINTGAFVGHRN-LDDTIFNTNIEATQAIARQLRLRNLGGIIII 346 SGGYL D+TEAM T+D+N+G N +++T+ N+EA + IARQLRLRN+GG++II Sbjct: 301 SGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNIGGLVII 360 Query: 347 DFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECP 406 DFIDM + ++RRVL L++ + D + ++ S GLVEMTR+R RES+ L CP Sbjct: 361 DFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQTLFTTCP 420 Query: 407 TCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESH-SLAEVEI 465 C+G +KT E++ EI R++ ++ + + P +A +K E+ L + Sbjct: 421 YCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVELIRLAK 480 Query: 466 FVGKQVKVQIEPLYNQEQFD 485 + ++++ + + Sbjct: 481 QLKAKLQINTSDSIHLNHYQ 500 >UniRef50_UPI0001C31D95 ribonuclease, Rne/Rng family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D95 Length = 636 Score = 496 bits (1277), Expect = e-139, Method: Composition-based stats. Identities = 196/516 (37%), Positives = 292/516 (56%), Gaps = 29/516 (5%) Query: 1 MTAELLVNVTPSETRVAYID------------------------GGILQEIHIEREARRG 36 M ++LV+V ETRVA ++ G + E+++ER R Sbjct: 1 MKKQVLVSVDRGETRVALLEATGDVAPAPRTSGRRRRKPANPSAGYRVAELYLERRGNRS 60 Query: 37 IVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI-MPHTECVAGEEQKQFTVRDISE 95 IVGNIYKG+V VL G++AAFVDIGL+K FLH +I +P E + I + Sbjct: 61 IVGNIYKGKVDNVLAGLEAAFVDIGLEKNGFLHVDEIVIPGVETPRRGRGQGKDGLKIHD 120 Query: 96 LVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLK 155 L+R GQ+++VQVVKDPL TKGARL+ ++T+P RY+V+ P VGVS+R+ + ER+RL+ Sbjct: 121 LLRPGQEVVVQVVKDPLKTKGARLSMELTIPGRYMVYTPQGEGVGVSRRLPDK-ERDRLR 179 Query: 156 KVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELAL 215 K A + GG IIRTAA G + + YL ++ + +R + Q ++ E L Sbjct: 180 KEAARLDLQGGGAIIRTAAFGARREDFEREMQYLFKLNDVLAKRVEETQAPDLVFQEADL 239 Query: 216 AQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENE 275 + RV+RD +R VD + Y+ L+ F + PE+ ++E + P+F+ F VE E Sbjct: 240 SIRVVRDVFSDHFERAVVDDQKQYQRLVSFFTRTAPELVDRVELWEEEAPLFERFGVERE 299 Query: 276 IQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG---HRNLDDTIFNTNIEATQAIA 332 IQ L R+V+L SGGYLIID EA+T +D+NTG+F+G L+DTI TN+EA + Sbjct: 300 IQGTLTRRVDLPSGGYLIIDYAEALTVIDVNTGSFIGRGRGARLEDTITRTNLEAAEEAV 359 Query: 333 RQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR 392 RQLRLR++GGII+IDFIDM +R VL +L ++L +DR KT V S LGLVEMTR+ Sbjct: 360 RQLRLRDIGGIIVIDFIDMARARNRDAVLKTLRKSLDEDRTKTFVVEISPLGLVEMTRQN 419 Query: 393 TRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEAL 452 E + ++ CPTC G G +++ ET+ + R + + ++++ L+ +P V Sbjct: 420 VTEGVREIMTRHCPTCGGEGVIRSEETIAIDFERRLRDIAKEHEAEALLLQINPRVGAVF 479 Query: 453 KGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 G + L ++E GK + + F + Sbjct: 480 TGNSARILRQLEEETGKWFHFEGSEGLPLDHFAITF 515 >UniRef50_B6JHD4 Ribonuclease E (RNase E) n=19 Tax=Alphaproteobacteria RepID=B6JHD4_OLICO Length = 1123 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 139/414 (33%), Positives = 217/414 (52%), Gaps = 3/414 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E V + I E++++ Q ++VQVVK+ G KGA LTT ++L RY V MP A Sbjct: 408 EEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 467 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I S +R RLK VV + E G I+RTA + E+ D YL R+W Sbjct: 468 RGGGISRKITSAQDRNRLKDVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWET 527 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V + + Q +Y E +L +R LRD + E+D + V Y +F +P Sbjct: 528 VRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEVLVSGEEGYHEARDFMKMLMPSNVR 587 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y QP+F VE+++ V L+SGGYL+I+QTEA+ ++D+N+G + Sbjct: 588 AVKLYRDNQPLFSRMGVESQLDAMFSPVVTLRSGGYLVINQTEALVSIDVNSGRSTREHH 647 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA + +ARQLRLR+L G+I+IDFIDM+ + + R V L L +DR + Sbjct: 648 IEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARI 707 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R S+ CPTC G G V++V +V +++R + Sbjct: 708 QVGRISHFGLLEMSRQRIRASVLESSTEPCPTCGGIGHVRSVASVALQLLRSLEEQLMKS 767 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ-FDVVM 488 + + V VA + + L ++E + V +P +Q F + Sbjct: 768 GTHNYTVRTRTDVALYVLNHKRGHLRDLEEAFQVTLAVIADPTVGGQQAFVIER 821 Score = 87.6 bits (216), Expect = 1e-15, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV + G ++E E R+ + GNIY +V+RV P +QAAF++ Sbjct: 107 MPNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIE 166 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G ++ FL S+I P + +++ Sbjct: 167 YGGNRHGFLAFSEIHPDYYQIPVADRQ 193 >UniRef50_A3EQR7 Ribonucleases G and E n=3 Tax=Leptospirillum RepID=A3EQR7_9BACT Length = 527 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 205/524 (39%), Positives = 318/524 (60%), Gaps = 40/524 (7%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E+L++V+ ET+VA ++ L E ER+ G+VGNIYKGRV++VLPGMQAAFVD+GL+ Sbjct: 2 EILIHVSHEETKVALVENRQLAEFFFERKREAGVVGNIYKGRVNKVLPGMQAAFVDVGLE 61 Query: 64 KAAFLHASDI-------------------------------------MPHTECVAGEEQK 86 KAAFL+ DI E + Sbjct: 62 KAAFLYVDDIYVEGSDILPGEMPQDDQTAPPPPVEGESPAEGSLTEDPAAGPVSRPEPPR 121 Query: 87 QFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIE 146 + + I E++ +GQ++++Q+ K+P+ TKG R TT I+LP RYLV+MP +HVGVS+RI Sbjct: 122 KVPRKPIEEILTEGQEILIQMTKEPISTKGPRATTYISLPGRYLVYMPQVNHVGVSRRIT 181 Query: 147 SESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTR 206 +E ER+RLK++V +GG+IIRT AEG+ E+E SD +L+ +W + R + + Sbjct: 182 NEEERQRLKEMVNALKGGKGGYIIRTVAEGMSESEARSDIIFLELLWQDIRSRAETMKAP 241 Query: 207 YQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPI 266 + +L + R +RD+ E++ + +D Y+ +++F Y+P+ S++ + G P+ Sbjct: 242 SLVREDLDVVFRTIRDYLTHEVETLYIDDVKEYKRVMDFIGTYMPDYASRVRLWEGPTPL 301 Query: 267 FDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIE 326 F +D+E ++ +ALE+KV LKSGGYL+ID+ EA+T +D+NTG FVG + + TI TN+E Sbjct: 302 FASYDIERQLSKALEKKVWLKSGGYLVIDRAEALTVIDVNTGRFVGENDPESTILQTNLE 361 Query: 327 ATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLV 386 A IARQLRLRN+GGIIIIDFIDM E +R +V L+++L+ D+ +T+ S LGLV Sbjct: 362 AVTEIARQLRLRNIGGIIIIDFIDMEKEKNREKVFQGLQESLAHDKARTNALKISDLGLV 421 Query: 387 EMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDS---DRFLVY 443 EM+RKR RE + H+L C C G+G K++ T+ YEI+ E+ V + + +++ Sbjct: 422 EMSRKRVREDLVHLLGETCAYCDGKGYTKSLRTIAYEILEELRSVPSGGQNPKEKKAILF 481 Query: 444 ASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 P + L+ EE L VE + +Q+ ++ +PL + E+F +V Sbjct: 482 VHPEIQTILQEEERDFLQAVERKIRRQIIIKPDPLSHIEEFSIV 525 >UniRef50_UPI0001BC2E10 putative ribonuclease n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2E10 Length = 1076 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 154/418 (36%), Positives = 246/418 (58%), Gaps = 11/418 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHI-EREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 +LV + +T++ ++ GI E ++ E + ++GN+Y G+V VLP M+AAF+DI Sbjct: 435 DRTMLVRESGEQTQLVVVEDGITVEHYLKENRQQSSLIGNVYLGKVQNVLPSMEAAFIDI 494 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G + A L+A ++ + G R I + G ++VQV KDP+G KGARLT Sbjct: 495 GKGRNAVLYAGEVNWDALGMDG------KARRIEVALSPGDAVLVQVTKDPIGHKGARLT 548 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 + I+LP R+LV++PG S G+S+++ ER RLKK++ E + G I+RTAAEG + Sbjct: 549 SQISLPGRFLVYVPGNSMTGISRKLPD-VERNRLKKLLKELVGDSNGVIVRTAAEGASDK 607 Query: 181 ELASDAAYLKRVWTKVMERKKRPQ--TRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 EL++D L + W + ++ K + LY E + R++RD + + + +D Sbjct: 608 ELSTDVERLAKRWETIEKKSKSTKVLAPQLLYSEPDMIVRIIRDVFNEDFSSLVIDGDGA 667 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + + E+ P++ ++ Y+ + IFD + VE ++Q+AL+R V L SGG L+ID+TE Sbjct: 668 WNTIHEYVEAVAPDLLDRVHRYSEDEDIFDHYRVEEQVQKALQRTVNLPSGGSLVIDRTE 727 Query: 299 AMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 AMT +D+NTG F G NL++T+ N+EA + + RQ+RLR++GGII++DFIDM E +R Sbjct: 728 AMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEVIRQVRLRDIGGIIVVDFIDMVLESNR 787 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 V+ L + L +DR K V ++LGLV+MTRKR + L + GRG + Sbjct: 788 DLVVRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRIGTGLAESLVSAGADLSGRGLLL 845 >UniRef50_C2KPN3 Ribonuclease G n=3 Tax=Actinomycetaceae RepID=C2KPN3_9ACTO Length = 817 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 152/421 (36%), Positives = 241/421 (57%), Gaps = 9/421 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E++V +VA ++ G+L E ++ R + +VGN+Y G+V VL M+AAFVDIG Sbjct: 230 KREMVVRGRDGLNQVALLEDGLLVEHYVSRHTQTTMVGNVYLGKVQNVLSSMEAAFVDIG 289 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + + + I E + G ++VQV KDP+G KGARLT+ Sbjct: 290 KGRNAVLYAGEVNWDAAGLNSKTGR------IEEALSPGDMVLVQVTKDPIGHKGARLTS 343 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ITL R+LV +P + G+S+++ E ER+RLK V+ G I+RTAAEG E + Sbjct: 344 QITLAGRHLVLVPSGAMTGISRKL-PEEERKRLKTVLKTMIPAGFGVIVRTAAEGATEEQ 402 Query: 182 LASDAAYLKRVWTKVMER-KKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L D L ++W + ++ + + L+ E LA RV+RD + ++ + + + Sbjct: 403 LRVDVERLVKIWEDIEKKRARPRNSPQLLHAEPELAVRVVRDIFNEDISSLTIQGEEAWH 462 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + ++ E PE+ +L + +F ++ ++ + ERKV L SGGYLIID+TEAM Sbjct: 463 TISKYVKELSPELGERLHFWEDDSDVFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTEAM 522 Query: 301 TTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 T +D+NTG ++G L++T+ N+EA + I RQLRLR++GGI++IDF+DM E +R Sbjct: 523 TVIDVNTGRYIGAGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNRDL 582 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 VL L + L +DR + V ++LGLV+MTRKR + + +C C GRG + Sbjct: 583 VLRRLVECLGRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTQCECCDGRGFIVHDVP 642 Query: 420 V 420 V Sbjct: 643 V 643 >UniRef50_B0UJB2 Ribonuclease, Rne/Rng family n=4 Tax=Methylobacterium RepID=B0UJB2_METS4 Length = 1092 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 128/403 (31%), Positives = 206/403 (51%), Gaps = 2/403 (0%) Query: 81 AGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHV 139 + I E++++ Q ++VQVVK+ G KGA LTT ++L RY V MP Sbjct: 395 PDRPRAPRRHYKIQEVIKRRQVILVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGRGG 454 Query: 140 GVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVME 198 G+S++I S ++R+RLK++ A+ + G I+RTA + E+ D YL R+W V E Sbjct: 455 GISRKITSAADRKRLKEIAADLEVPDGMGVILRTAGASRTKPEIKRDFEYLMRLWESVRE 514 Query: 199 RKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLE 258 +Y E +L +R +RD + ++D + V Y +F +P + ++ Sbjct: 515 LTLSSSAPALVYEEGSLIKRAIRDLYNKDIDEVLVAGDDAYREAKDFMRMLMPSQSKVVK 574 Query: 259 HYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDD 318 Y P+F + VE ++ V L+SGGYL+I+ TEA+ ++D+N+G +++D Sbjct: 575 PYRDPTPLFARYGVEQQLDAMFSNHVALRSGGYLVINPTEALVSIDVNSGRATREHDIED 634 Query: 319 TIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVN 378 T TN+EA + +ARQLRLR+L G+I+IDFIDM + + R V L + L DR + V Sbjct: 635 TALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKLNECLKDDRARIQVG 694 Query: 379 GFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSD 438 S GL+EM+R+R R + CP C G G V+ +V +I+R I S Sbjct: 695 RISPFGLLEMSRQRIRTGVLESSSVPCPHCGGSGFVRATSSVALQILRAIEEALIKSSSH 754 Query: 439 RFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQ 481 ++ VA + ++ L E+E G + V + Sbjct: 755 NLILRTRTDVALYILNQKRGHLRELETRFGVSITVSADERLPP 797 Score = 99.2 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + P ETRV + G ++E E RR + GNIY +V+RV P +QAAFV+ Sbjct: 1 MANKMLIDASHPEETRVVTVKGSKVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQ 85 G ++ FL S+I P + ++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADR 86 >UniRef50_B2HMG4 Ribonuclease E Rne n=28 Tax=Mycobacterium RepID=B2HMG4_MYCMM Length = 1017 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 159/421 (37%), Positives = 246/421 (58%), Gaps = 21/421 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ GI+ E + A +VGNIY G V VLP M+AAFVDIG + L+A ++ Sbjct: 362 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 421 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G ++ I + ++ G ++VQV KDP+G KGARLTT ++L RYLV++ Sbjct: 422 NWDAAGLGGADR------KIEQALKPGDYIVVQVSKDPVGHKGARLTTQVSLAGRYLVYV 475 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PGAS G+S+++ +ER+RLK+++ E G IIRTA+EGV E ++ +D L+ W Sbjct: 476 PGASSTGISRKLPD-TERQRLKEILREVVPSDAGVIIRTASEGVKEDDIRADVTRLQERW 534 Query: 194 TKVMERK-----KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 ++ + K LY E + +V+RD + + + V ++ + E+ S Sbjct: 535 NQIEAKAVEIKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINEYVSS 594 Query: 249 YIPEMTSKLEHYTGRQ--------PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 P++ SKL Y +F + ++ ++ +A++RKV L SGG L+ID+TEAM Sbjct: 595 VAPDLVSKLSKYEPAVGSEGQVGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAM 654 Query: 301 TTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 T VD+NTG F G NL+ T+ N+EA + I RQLRLR++GGI++IDFIDM E +R Sbjct: 655 TVVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDL 714 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 VL L +AL++DR + V+ ++LGLV++TRKR + CP C GRG + + Sbjct: 715 VLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPHCSGRGILLHADP 774 Query: 420 V 420 V Sbjct: 775 V 775 >UniRef50_C0VZF1 Ribonuclease E n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZF1_9ACTO Length = 819 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 157/421 (37%), Positives = 251/421 (59%), Gaps = 9/421 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E++V ++A ++ G+L E ++ R ++ +VGNIY GRV VLP M+AAFVD+G Sbjct: 182 KREMIVREQNGLNQIAVLEDGLLVEHYVARRTQQTMVGNIYLGRVQNVLPSMEAAFVDLG 241 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ +AG ++ I + ++ G ++VQV KDP+G KGARLT+ Sbjct: 242 KGRNAVLYAGEVNWEAVGLAGRPRR------IEQALKSGDTVLVQVTKDPIGHKGARLTS 295 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ITL RYLV +P G+S+++ E ER RLKK++++ + G I+RTAAEG E + Sbjct: 296 QITLAGRYLVLVPAGQMTGISRKL-PERERTRLKKLLSKIVPKDYGVIVRTAAEGATEEQ 354 Query: 182 LASDAAYLKRVWTKVMERKKR-PQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L D L+ W ++ +++K+ + L E LA RV+RD + + V T++ Sbjct: 355 LRDDVTRLQAQWEEIEKKQKKTQKVPVLLRSEPELAVRVVRDVFTEDFQSLTVQGEETWQ 414 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + E+ E P++ +L + ++ +F + ++ ++ + ++RKV L SGG L+ID+TEAM Sbjct: 415 TVQEYVDELAPDLRDRLRRWVNKEDVFTVHRIDEQLTKGMDRKVWLPSGGSLVIDRTEAM 474 Query: 301 TTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 T +D+NTG F+G L++T+ N+EA + I RQLRLR++GGI++IDF+DM E +R Sbjct: 475 TVIDVNTGKFIGSGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVLESNRDL 534 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 VL L + L +DR + V ++LGLV+MTRKR E + C C GRG + Sbjct: 535 VLRRLVECLGRDRTRHQVTEITSLGLVQMTRKRVGEGLVEAFSTPCECCDGRGFIVHQNP 594 Query: 420 V 420 V Sbjct: 595 V 595 >UniRef50_B6INB6 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenum SW RepID=B6INB6_RHOCS Length = 1035 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 127/404 (31%), Positives = 215/404 (53%), Gaps = 2/404 (0%) Query: 88 FTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGAS-HVGVSQRIE 146 I E++++ Q L+VQV K+ G KGA LTT ++LP RY V MP G+S++I Sbjct: 225 LKSYKIQEVIKRRQILLVQVTKEERGNKGAALTTYLSLPGRYCVLMPNTPRGGGISRKIT 284 Query: 147 SESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQT 205 + ++R+R+K+++ + I+RTA + E+ D YL R+W + E + Sbjct: 285 NPADRKRMKELLEGLDVPQGMSVILRTAGIERSKPEIKRDLEYLMRLWDSIRELTLQSVA 344 Query: 206 RYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQP 265 +Y E L +R +RD +++D + V+ Y +F +P K++ Y P Sbjct: 345 PALIYEEANLIKRSIRDLYASDIDEVIVEGEQGYRTAKDFMRMLMPSHAKKVQPYKDDIP 404 Query: 266 IFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNI 325 +F F VE I+ + V+L+SGGY++I+QTEA+ +D+N+G RN+++T TN+ Sbjct: 405 LFHRFQVEGAIETMFDPVVQLRSGGYIVINQTEALVAIDVNSGRSTKERNIEETALRTNL 464 Query: 326 EATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGL 385 EA + IARQLRLR+L G+I+IDFIDM + V L++A+ DR + + S GL Sbjct: 465 EAAEEIARQLRLRDLAGLIVIDFIDMEEARNNASVEKRLKEAMKADRARIQLGRISPFGL 524 Query: 386 VEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYAS 445 +E++R+R R S++ + CP C G G V++VE+ ++R I S V A+ Sbjct: 525 LELSRQRLRPSLQEINFERCPHCAGTGLVRSVESAALAVLRAIEEEGIRRRSAEITVTAA 584 Query: 446 PAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM 489 ++ + ++ SL +E G +V + + + + Sbjct: 585 ASLVLYILNQKRESLTAIERRYGLRVYLAADDSLTPPAHRLERL 628 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M +LV+ T P ETRV + G L+E+ E +R+ + GNIY +V RV P +QAAFV+ Sbjct: 1 MAKRMLVDATHPEETRVVVVSGNRLEELDFEIASRKQLKGNIYLAKVIRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G ++ FL S+I P + +++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYRIPVADRE 87 >UniRef50_D1B5Z1 Ribonuclease, Rne/Rng family n=3 Tax=Synergistaceae RepID=D1B5Z1_THEAS Length = 496 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 177/488 (36%), Positives = 263/488 (53%), Gaps = 27/488 (5%) Query: 3 AELLVNVTP-SETRVAYID-GGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 ++ N E+RVA +D G L +I+IER R G IYK RV VLPGM AAFV++ Sbjct: 5 KTIVANTLESEESRVAVLDPSGRLLDIYIERMWERQKAGEIYKARVDNVLPGMNAAFVNL 64 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G + FL+ D+ G++++VQV K KGAR+T Sbjct: 65 GDGRNGFLYLEDLGRSP--------------------HPGEEILVQVAKTARKGKGARVT 104 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 ++LP RYLV +P VGVS+RIE E ER+RLK + E + G I+RT A+G Sbjct: 105 PKLSLPGRYLVLVPEGKDVGVSKRIEDEEERQRLKVLGREVRPQGFGIIVRTVAQGCHMD 164 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 +L SD L +W + R LY + L RVLRD D ++ + VD+ + Sbjct: 165 QLKSDVEDLMDLWDSICAAASRSPAPCLLYRDRGLLDRVLRDELDHQVAEVVVDNPEELD 224 Query: 241 ALLEFTSEYIP-EMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + E + ++ Y GR P+F+++ VE E++ ALERKV L SG YL+IDQ EA Sbjct: 225 LVREMVGRFFSQGKGPEVTLYRGRTPVFEVYGVEREMELALERKVWLPSGAYLVIDQAEA 284 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T +D+NTG F G ++L TI TN+EA + IARQLRLR +GGI+++DFIDM++E HR+ Sbjct: 285 LTVIDVNTGKFTGSKDLKSTILKTNLEAAEEIARQLRLRAIGGIVVVDFIDMDDESHRQI 344 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 +L + + L DR + V G ++LGLVE+TR+RTR ++ V+ CP C G G V+ + Sbjct: 345 LLETTRELLKGDRQRAKVFGVTSLGLVELTRRRTRGDLKSVMTRGCPMCGGSGLVEREDA 404 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + R + ++ + LV A+P +A + L E ++ ++ + Sbjct: 405 CAMRLKRAVRKMTGDSPPEALLVAANPQLARH----CAEYLLAWEEEFRCRILLREDQSL 460 Query: 480 NQEQFDVV 487 +F V Sbjct: 461 QWGRFKVE 468 >UniRef50_A0R152 Ribonuclease, Rne/Rng family protein n=9 Tax=Corynebacterineae RepID=A0R152_MYCS2 Length = 1037 Score = 489 bits (1260), Expect = e-137, Method: Composition-based stats. Identities = 154/417 (36%), Positives = 244/417 (58%), Gaps = 17/417 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T++A ++ G++ E + A +VGNIY G V VLP M+AAFVDIG + L+A ++ Sbjct: 402 TQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 461 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G+ + I + ++ G ++VQV KDP+G KGARLTT ++L RYLV++ Sbjct: 462 NWEAAGLGGQNR------KIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYV 515 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PGAS G+S+++ +ER+RLK+++ E G IIRTA+EGV E ++ SD L++ W Sbjct: 516 PGASSTGISRKLPD-TERQRLKEILREVVPSDAGVIIRTASEGVKEEDIRSDVERLQKRW 574 Query: 194 TKVMERK-----KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 +++ + K+ LY E + +V+RD + + + V + + + Sbjct: 575 SEIEAKAAEVTEKKAGAAVALYEEPDVLVKVIRDLFNEDFSSLIVSGDEAWNTINSYVEA 634 Query: 249 YIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 P++ +L Y +F + ++ ++ +A++RKV L SGG L+ID+TEAMT VD Sbjct: 635 VAPDLMPRLTKYEPAGPDAPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVD 694 Query: 305 INTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG F G NL+ T+ N+EA + I RQLRLR++GGI++IDFIDM E +R VL Sbjct: 695 VNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRR 754 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L +AL++DR + V+ ++LGLV++TRKR + C C GRG V + + Sbjct: 755 LTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTACTHCGGRGIVLHGDPI 811 >UniRef50_C6QC83 Ribonuclease, Rne/Rng family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QC83_9RHIZ Length = 1025 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 134/445 (30%), Positives = 221/445 (49%), Gaps = 2/445 (0%) Query: 46 VSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMV 105 V G Q A D G + E ++++ I E++++ Q ++V Sbjct: 249 VEDDYAGHQDALNDNGSVEHEHHDEGSQPEFREGPRSRQRRRPRSYKIQEVIKRRQIILV 308 Query: 106 QVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESESERERLKKVVAEY-CD 163 QVVK+ G KGA LTT ++L RY V MP A G+S++I + +R RLK + E Sbjct: 309 QVVKEERGNKGAALTTYLSLAGRYTVLMPNTARGGGISRKITNPQDRRRLKSIAQELEVP 368 Query: 164 EQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDF 223 E G IIRTA + E+ D YL R+W V + + +Y E L +R +RD Sbjct: 369 EGMGLIIRTAGAARTKQEIKRDFEYLLRLWESVRDLTLQSTAPSLVYEEGDLIKRSIRDL 428 Query: 224 ADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERK 283 + +++ I V ++ +F +P + Y P+F + VE ++ + + Sbjct: 429 YNKDVEEIVVAGDAGHQEAADFMKMLMPSHAKNVVAYREPTPLFTRYGVERQLNAMFQPQ 488 Query: 284 VELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGI 343 V L+SGGY++I+QTEA+ +D+N+G ++++T TN+EA IARQL+LR+L G+ Sbjct: 489 VTLRSGGYIVINQTEALVAIDVNSGKSTREFSIEETALATNLEAADEIARQLKLRDLAGL 548 Query: 344 IIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 I+IDFIDM + + R V L+ AL DR + + S GL+EM+R+R R + + Sbjct: 549 IVIDFIDMEEKRNNRAVERRLKDALRFDRARIQLGRISHFGLMEMSRQRLRTGVLEGSTS 608 Query: 404 ECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEV 463 +C C G G +++ E++ ++R I A + + + AVA + + +A++ Sbjct: 609 QCAHCQGTGIIRSTESIALAVLRGIEDAITAGANGPLVATTTSAVALYILNSKRAYVADM 668 Query: 464 EIFVGKQVKVQIEPLYNQEQFDVVM 488 E+ G V V F V Sbjct: 669 EVRHGYSVTVLGSDRVQGANFTVER 693 Score = 99 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 2/88 (2%) Query: 1 MTA-ELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFV 58 M+ ++L++ T P ETRV G ++E E AR+ + GNIY +V+RV P +QAAFV Sbjct: 1 MSNTKMLIDATHPEETRVVVQRNGRVEEFDFESAARKLLRGNIYLAKVTRVEPSLQAAFV 60 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQK 86 D G ++ FL +++ P + +++ Sbjct: 61 DYGGNRHGFLAFNEVHPDYYQIPVADRQ 88 >UniRef50_A6WDN2 Ribonuclease, Rne/Rng family n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WDN2_KINRD Length = 1244 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 158/407 (38%), Positives = 243/407 (59%), Gaps = 12/407 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V +T++ ++ GIL E + + A+ +VGN+Y GRV VLP M+AAF+D+G Sbjct: 733 ERVMVVRQQADKTQIGVLEDGILVEHYGAKLAQTTMVGNVYLGRVQNVLPSMEAAFIDVG 792 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ + G+ ++ I ++ G ++VQV KDP+G KGARLT+ Sbjct: 793 KGRNAVLYAGEVNWDAAGLEGQPRR------IEAALKSGDPVLVQVTKDPVGHKGARLTS 846 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ++LP RYLV++P S G+S+++ +ER RLKKV+ + E G I+RTAAEGV E E Sbjct: 847 QVSLPGRYLVYVPRGSMTGISRKLPD-TERARLKKVLKQVVPEGAGVIVRTAAEGVAEEE 905 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 LA+D L+ W + + L+GE L RV+RD + + ++ + +E Sbjct: 906 LAADVQRLQATWEAIQAKASSKNAPVLLHGEPDLTVRVVRDVFNEDFTKLVISGDEAWET 965 Query: 242 LLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 + + + P++ +LE + G + +F ++ ++Q+AL RKV L SGG L+ID T Sbjct: 966 VRGYVDDVAPDLAERLERWDGGAGGAEDVFAHHRIDEQLQKALGRKVWLPSGGSLVIDPT 1025 Query: 298 EAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 EAM VD+NTG F G L++T+ N+EA + I RQLRLR++GGII+IDFIDM E + Sbjct: 1026 EAMHVVDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESN 1085 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 R VL L + L +DR K V ++LGLV+MTRKRT + + VL Sbjct: 1086 RDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRTGQGLAAVLDE 1132 >UniRef50_D2LHL1 Ribonuclease, Rne/Rng family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LHL1_RHOVA Length = 1049 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 133/413 (32%), Positives = 224/413 (54%), Gaps = 2/413 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E + ++++ I E++++ Q +++QVVK+ G+KGA LTT ++L RY V MP A Sbjct: 314 EELPQRHKRRWRHYKIQEVIKRNQIVLIQVVKEERGSKGAALTTYLSLAGRYTVLMPNTA 373 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 S G+S++I ++R+RLK++ E E G IIRTA +AE+ D YL R+W Sbjct: 374 SGGGISRKITVPADRKRLKEIAQELDVPEGMGLIIRTAGASRTKAEIKRDFEYLLRLWEN 433 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V + + +Y E L +R +RD + ++D I V + EF +P Sbjct: 434 VRDLTLKSTAPCLVYEEGDLIKRSIRDLYNKDIDEILVAGDEAHHEAREFMRMLMPSHAK 493 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 + Y +PIF ++VE ++ + V LKSGGY++++QTEA+ +D+N+G + Sbjct: 494 NVLLYKEPEPIFTKYEVERQLNQMFSPVVTLKSGGYIVLNQTEALVAIDVNSGRSTREYS 553 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA + +ARQ+RLR+L G+I+IDFIDM+ + R V L+++L DR + Sbjct: 554 IEDTALKTNMEAAEEVARQVRLRDLAGLIVIDFIDMDERRNNRSVERKLKESLRHDRARI 613 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R+ + V CP C G G ++++E+V I+R I Sbjct: 614 QVGHISHFGLMEMSRQRLRQGVVEVSTVPCPVCQGVGHIRSIESVALMILRSIEDHLRTQ 673 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 + + AS A + + L ++E+ G + +Q + + F + Sbjct: 674 GAANITLTASTEAALYILNNKRSYLRDIELRYGVTIVLQPDDKAHGAHFVLER 726 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 1/97 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV G ++E E +R+ + GNIY +V+R+ P +QAAFV+ Sbjct: 1 MANKMLIDATHPEETRVVVTRGNRVEEFDYESASRKQLRGNIYLAKVARIEPSLQAAFVN 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISEL 96 G ++ FL ++I P + ++Q + ++ Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVAVREQLMKEEAADR 97 >UniRef50_C2BMV7 Ribonuclease E n=3 Tax=Corynebacterium RepID=C2BMV7_9CORY Length = 1294 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 155/435 (35%), Positives = 245/435 (56%), Gaps = 23/435 (5%) Query: 2 TAELLVNVTPSE------TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQA 55 ++V E T+V ++ +L E + E++ ++GNIY GRV VLP M+A Sbjct: 404 ERTMVVRDKEREDGAGIITQVGVLEDDLLVEHFVTTESQASLIGNIYLGRVQNVLPSMEA 463 Query: 56 AFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTK 115 AFVDIG + L+A +I + + R + ++ G ++VQV KDP+G K Sbjct: 464 AFVDIGQGRNGVLYAGEIDW------RKTKLHGRARKVENALKSGDQVLVQVAKDPIGHK 517 Query: 116 GARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAE 175 GARLTT I+L RYLV++PG G+S+++ ER+RLK ++ GG IIRTAAE Sbjct: 518 GARLTTQISLAGRYLVYVPGGRSAGISRKL-PAPERKRLKDILGRVVPGDGGAIIRTAAE 576 Query: 176 GVGEAELASDAAYLKRVWTKVMERKKRPQ-----TRYQLYGELALAQRVLRDFADAELDR 230 V E +A+D L W ++ K+ + +Y E + +V+RD + + Sbjct: 577 NVPEEAIATDVNRLHSRWEDIVAHAKKEKSSKGAKPVTMYEEPNMLIKVVRDLFNEDFTE 636 Query: 231 IRVDSRLTYEALLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVEL 286 + VD + ++ + + P++ ++ Y G Q F+ + ++ ++ +AL RKV L Sbjct: 637 LIVDGKRSFNTVRAYVDSMAPDLADRVVRYRAKDHGGQDAFEAYRIDEQLHKALSRKVWL 696 Query: 287 KSGGYLIIDQTEAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIII 345 SGG L+ID+TEAMT +D+NTG F G NL++T+ N+EA + I RQ+RLR+LGG+I+ Sbjct: 697 PSGGTLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIV 756 Query: 346 IDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNEC 405 +DFIDM +++ VL L++AL +DR + V+ ++LGLV+MTRKR + EC Sbjct: 757 VDFIDMVLPENQDLVLRRLKEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTEC 816 Query: 406 PTCHGRGTVKTVETV 420 C+GRG + V Sbjct: 817 ECCNGRGIIIHQYPV 831 >UniRef50_D1N7U6 Ribonuclease, Rne/Rng family n=2 Tax=Lentisphaerae RepID=D1N7U6_9BACT Length = 544 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 176/530 (33%), Positives = 278/530 (52%), Gaps = 45/530 (8%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++++N E R A ++ G L+E IER+ VG+IY G++ + P +QAAFVDIG Sbjct: 6 KQIILNCEKLERRFALLNNGRLEEYQIERDGNEPKVGDIYLGKIINLEPSLQAAFVDIGA 65 Query: 63 DKAAFLHASDIMPHTECVAG---------------------------------------- 82 +K AFLH +++P + + G Sbjct: 66 EKNAFLHYHEMLPGCDELLGRRDSDDDDDEKTVSGNEQPIQAKRQKRQEAKPNSKVNQEA 125 Query: 83 -EEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGV 141 +K+ TV DI + + G +++VQVVK P+ TKGAR+TTDI++ RYLV MP + H+G+ Sbjct: 126 LRRKKKLTVADIPNIFKPGMEILVQVVKSPISTKGARVTTDISIAGRYLVLMPYSEHIGL 185 Query: 142 SQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERK 200 S RIE ER+RL+K++A E G I RT EG D L W K+ + Sbjct: 186 STRIEGGQERDRLRKILAALELPEGMGLICRTVGEGRRSTFFKRDLDLLLDNWRKIEKGM 245 Query: 201 KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE-MTSKLEH 259 LY E L +R +RDF E I VD ++E + + M K+ Sbjct: 246 DTRNAPALLYTEPNLVERTIRDFMTEEFQGIVVDDADASCQIIETLNRFGGRKMAEKVTL 305 Query: 260 YTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDT 319 Y +P+F+ + + ++++ +R+V L GG +++D+TEA+ +D+N+G + + Sbjct: 306 YNSGKPVFEAYRINDQLREVFQREVRLPGGGAIVVDETEALIAIDVNSGRGRKGADQPEF 365 Query: 320 IFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNG 379 I TN+EA + IARQLRLRN+GG++++DFIDM + R V ++++ + DR KT V Sbjct: 366 ILKTNLEAAEEIARQLRLRNIGGLVVLDFIDMRSARDREEVYRTMKRLVKDDRAKTKVLP 425 Query: 380 FSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH--AYDS 437 S LGL+EMTR+R ESI+ + CP CHG G VK+V ++ EI R + V Y + Sbjct: 426 LSRLGLMEMTRQREHESIKDQVFMPCPYCHGSGRVKSVVSMSVEIQRRLNTVLRESRYRN 485 Query: 438 DRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 V P + + L+ E++ L E+E + + +P+ + E+F +V Sbjct: 486 RPVRVIMHPDILQRLRNEDALLLRELEEKYKHDLSFRADPMLHSEEFKLV 535 >UniRef50_C5VAX0 Ribonuclease E n=5 Tax=Corynebacterium RepID=C5VAX0_9CORY Length = 929 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 160/476 (33%), Positives = 252/476 (52%), Gaps = 27/476 (5%) Query: 2 TAELLVNVTPSE------TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQA 55 ++V T+V ++ +L E + + + + GNIY GRV VLP M+A Sbjct: 288 NRTMVVRERQRHDHPGIVTQVGVLEDDMLVEHFVTSDTQSSLAGNIYLGRVQNVLPAMEA 347 Query: 56 AFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTK 115 AF+DIG + L+A ++ + G R I + ++ G ++VQV KDP+G K Sbjct: 348 AFIDIGKGRNGVLYAGEVDWRAANLGG------RHRKIEQALKSGDQVLVQVAKDPIGQK 401 Query: 116 GARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAE 175 G RLTT I+L RYLV++PG G+S+++ ER+RLK ++ G IIRTAAE Sbjct: 402 GPRLTTQISLAGRYLVYVPGGKSAGISRKL-PAPERKRLKAILKNVVPADGSVIIRTAAE 460 Query: 176 GVGEAELASDAAYLKRVWTKVMERKKRPQ-----TRYQLYGELALAQRVLRDFADAELDR 230 GV E +A+D L +W ++ ER + + +Y E + +V+RD + + Sbjct: 461 GVPEDAIAADVNRLHSLWEQIQERTLKEKESKGTKPVTMYEEPNMLVKVVRDLFNEDFTS 520 Query: 231 IRVDSRLTYEALLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVEL 286 + VD + + + P++ +LE + Q F+ V+ ++++AL RKV L Sbjct: 521 LVVDGNRAWNTVHAYIQSVAPDLLDRLEKFDREAHDGQDAFEALRVDEQLKKALSRKVWL 580 Query: 287 KSGGYLIIDQTEAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIII 345 SGG L+ID+TEAMT +D+NTG F G NL++T+ N+EA + I RQ+RLR+LGG+I+ Sbjct: 581 PSGGTLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIV 640 Query: 346 IDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNEC 405 +DFIDM +++ VL L +AL +DR + ++ ++LGLV++TRKR + EC Sbjct: 641 VDFIDMVLPENQDLVLRRLTEALGRDRTRHQISEVTSLGLVQITRKRLGTGLLETFATEC 700 Query: 406 PTCHGRGTVKTVETVCYEIM--REIVRVHHAYDSDRFLVYASPAVAEALKGEESHS 459 C GRG + + V + + R R H PAV +ES Sbjct: 701 EECSGRGVLIHDDPVEHHTISDRPERRGKHGVPHQDPTR--HPAVLAMEHQDESDE 754 >UniRef50_A1AW88 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteobacteria RepID=A1AW88_RUTMC Length = 584 Score = 486 bits (1252), Expect = e-136, Method: Composition-based stats. Identities = 143/489 (29%), Positives = 257/489 (52%), Gaps = 9/489 (1%) Query: 3 AELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N E RV + L ++IE + GNIY G++SRV ++AAFVD G Sbjct: 2 NHILINAIYSEEIRVGIVKNKKLTGLNIETSLNKKTKGNIYHGKISRVEQSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 +K FL ++ + ++ T IS+++++GQ+++VQ+ K+ G KGA L+T Sbjct: 62 KEKQGFLPFKEVAETLHNDVKAKGEKLT---ISDVLKEGQEIIVQIEKEERGNKGAALST 118 Query: 122 DITLPSRYLVFMPGASH-VGVSQRIESESERERLKKVVAE-YCDEQGGFIIRTAAEGVGE 179 I L Y++ MP G+S++I +R+ LK+++++ G IIRTA G Sbjct: 119 YINLAGAYMILMPNNPKNHGISRQIV-ALDRQSLKEIISKIILPNHSGLIIRTAGSGKSF 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 EL + YL +W + + +Y E + R LRD ++ D + +D + Sbjct: 178 EELQWEVDYLSDLWKSINTATLTRSAPFLIYQESDIIIRTLRDHLRSDTDSVIIDELEAF 237 Query: 240 EALLEFTSEYIPEMTSKLEHYT-GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + EF S +P +++ + +F+ +E +++ R+V L++G ++ D TE Sbjct: 238 QNAKEFVSFVLPHYLDRIKFFDVSEHSLFNHMGIEAQVKSVFNREVSLRTGAIIVFDPTE 297 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +DIN+ ++++T +NTN+EAT+ IA QL+LR++GG+++IDFIDM +E+HR Sbjct: 298 ALTAIDINSARATKGADIEETAYNTNLEATKEIALQLQLRDIGGLVVIDFIDMASEEHRV 357 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 + ++E+A + DR + + S GL+EM+R+R S+ + C CHGRGT T+ Sbjct: 358 SIEKAMEKATNADRARIQIGTISQFGLLEMSRQRLMNSVTESVEKPCSACHGRGTTPTIP 417 Query: 419 TVCYEIMREIVRVH-HAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 T+ I+R++ A + + +S V + E+ + ++E G ++ + P Sbjct: 418 TLALTILRQLEDGCNAAKQTAHLTIQSSIEVITYILNEKRQEIIKLEGKHGIKITLLPNP 477 Query: 478 LYNQEQFDV 486 F + Sbjct: 478 YMQFPNFTI 486 >UniRef50_A3VT88 Ribonuclease E n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VT88_9PROT Length = 1038 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 136/422 (32%), Positives = 221/422 (52%), Gaps = 2/422 (0%) Query: 69 HASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSR 128 + + + E + I E++++ Q ++VQVVK+ G KGA LTT ++L R Sbjct: 362 QIAALQKRYDEARRERDRLLRNYRIQEVIKRRQVMLVQVVKEERGNKGAALTTFLSLAGR 421 Query: 129 YLVFMPGA-SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDA 186 Y V MP GVS++I ++S+R RL+K +AE G IIRTA +AE+ D Sbjct: 422 YGVLMPNNARGGGVSRKISNQSDRRRLRKAMAELNVPAGQGLIIRTAGAKRTKAEIKRDY 481 Query: 187 AYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFT 246 YL R+W + + + +Y E +L +R +RD D + I V+ Y +F Sbjct: 482 DYLARLWDTIRSQTLQSVAPCLIYEEASLIKRAIRDLYDKDTAEILVEGEDGYREAKDFM 541 Query: 247 SEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDIN 306 +P ++ Y ++P+F + VE ++ + V LKSGGYL+I QTEA+ ++D+N Sbjct: 542 KMLMPSHAKNVQPYREQEPLFLHYGVERQLDEMYQPVVTLKSGGYLVIQQTEALISIDVN 601 Query: 307 TGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQ 366 +G RN++ T TN EA +ARQ RLR+L G+I++DFIDM+ + R V ++ Sbjct: 602 SGKSTKERNVEATALKTNSEAAVEVARQCRLRDLAGLIVVDFIDMDENRNNRTVEKKFKE 661 Query: 367 ALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMR 426 AL DR + V S GL+EM+R+R R I CPTC G G V++VE I+R Sbjct: 662 ALKSDRARIQVGSISTFGLLEMSRQRRRSGIVDGTTRTCPTCDGAGAVRSVEMAALRILR 721 Query: 427 EIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 I + + A+ V+ + ++ L ++E G ++ V+ + N +Q+++ Sbjct: 722 AIEEKAASDKAASVTASAALDVSLYILNQKRDWLNQIEATYGCRITVEGDSDKNGDQYEL 781 Query: 487 VM 488 + Sbjct: 782 TV 783 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT +++++ P ETRVA + G +++ E +R+ + GNIY RV+RV P +QAAF++ Sbjct: 1 MTKKMMIDARHPEETRVAVLSNGKVEDFDFESLSRKPLRGNIYLARVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFT 89 G ++ FL +I + +++ Sbjct: 61 YGGNRHGFLAFGEIHSDYYQIPVADREVLR 90 >UniRef50_A8MHL2 Ribonuclease, Rne/Rng family n=2 Tax=Alkaliphilus RepID=A8MHL2_ALKOO Length = 501 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 191/487 (39%), Positives = 291/487 (59%), Gaps = 3/487 (0%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +++V+V SE R+A ++ L E++IER + IVGNIYKGRV VLPGMQAAFVDIGL Sbjct: 2 NQIIVDVGISENRLAILEDEELVELYIERRNNKRIVGNIYKGRVVNVLPGMQAAFVDIGL 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K FL+ D + + + I ++V+QGQ+++VQV+K+P+ KGAR+TT+ Sbjct: 62 EKNCFLYVKDALGQEYFNKKDFVDREI--SIKDVVKQGQEIIVQVIKEPIADKGARVTTN 119 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 ITLP RYLV MP ++GVS++I S ERERLK + E G I+RT AEG + + Sbjct: 120 ITLPGRYLVLMPDTQYIGVSRKIGSAEERERLKAEIEALKPENMGVILRTVAEGKSKDDF 179 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D +L ++W K+ + KK +Y + L + +RD + ++ Y++ Sbjct: 180 REDIKFLLKLWQKIEKEKKLGFAPRLIYKDFDLIDKTIRDTFSKNIHEFIINDENEYKSA 239 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 ++ P + +L ++ IF + +E++I +ALERK+ LKSGGY++ID TEA+T Sbjct: 240 MDLVELLSPNLKDRLSYFEESHDIFRHYKIESQIHKALERKIWLKSGGYIVIDSTEALTV 299 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 VD+NTG +VG +L+DT+ TN+EA IA+QLRLR++GGIIIIDFIDM+NE+ ++VL+ Sbjct: 300 VDVNTGKYVGITDLEDTVLKTNLEAAVEIAKQLRLRDIGGIIIIDFIDMSNEEDEQKVLN 359 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 LE++L+KDR K+ + G + LGLVEMTRK+ R+ +E V+ +C C G G + T+ Sbjct: 360 LLEKSLNKDRTKSKILGMTELGLVEMTRKKVRQKLESVMQKKCHCCDGSGKLLNEYTLLQ 419 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 +E+ R+ + + P A + EE + E+E Q + P N + Sbjct: 420 RFEKEMRRIALHTSCEAVIFEVHP-TAFKIFEEEFITRKEIEGLTKVQSFIVPNPSLNFD 478 Query: 483 QFDVVMM 489 M Sbjct: 479 DLKTKAM 485 >UniRef50_C0XRI1 Ribonuclease E (Fragment) n=2 Tax=Corynebacterium RepID=C0XRI1_9CORY Length = 743 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 160/435 (36%), Positives = 251/435 (57%), Gaps = 23/435 (5%) Query: 2 TAELLVNVTPSE------TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQA 55 ++V T+V ++ G+L E + + ++GNIY GRV VLP M+A Sbjct: 234 ERTMVVRERARHSGHGTITQVGVLEDGVLAEHFVTSDQNASMIGNIYLGRVQNVLPSMEA 293 Query: 56 AFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTK 115 AF+DIG ++ L+A ++ + G ++ I + ++ G +MVQV KDP+G K Sbjct: 294 AFIDIGQNRNGVLYAGEVDWKAAGLGGRSRR------IEQALKSGDQVMVQVTKDPVGHK 347 Query: 116 GARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAE 175 GARLTT I+L RYLV++PG G+S+++ ER+RLK+++A+ +GG IIRTAAE Sbjct: 348 GARLTTQISLAGRYLVYVPGGRSAGISRKL-PAPERKRLKEILAKVVPGKGGAIIRTAAE 406 Query: 176 GVGEAELASDAAYLKRVWTKVMERKKRPQ-----TRYQLYGELALAQRVLRDFADAELDR 230 GV E +A+D L W + E+ +R + LY E L +V+RD + + + Sbjct: 407 GVSEEAIAADVTRLHNQWETLQEQAEREKSSKGAKPVTLYEEPNLLVKVVRDLFNEDFSK 466 Query: 231 IRVDSRLTYEALLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVEL 286 + VD + + + + S P++ +L Y Q F+ + V+ +IQ+AL R V L Sbjct: 467 LIVDGKRPWNTVHAYVSSVAPDLEDRLVRYDRAAHDGQDAFEAYRVDEQIQKALSRTVWL 526 Query: 287 KSGGYLIIDQTEAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIII 345 SGG L+ID+TEAMT +D+NTG F G +L++T+ N+EA + I RQ+RLR++GG+II Sbjct: 527 PSGGTLVIDRTEAMTVIDVNTGKFTGSGGSLEETVTRNNLEAAEEIVRQMRLRDIGGMII 586 Query: 346 IDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNEC 405 +DFIDM +++ VL L++AL +DR + V+ ++LGLV+MTRKR + C Sbjct: 587 VDFIDMILPENQELVLRRLKEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFSTPC 646 Query: 406 PTCHGRGTVKTVETV 420 C GRG + + V Sbjct: 647 ECCGGRGIIVADDPV 661 >UniRef50_D1Y9V9 S1 RNA binding domain protein n=3 Tax=Propionibacterium acnes RepID=D1Y9V9_PROAC Length = 874 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 153/420 (36%), Positives = 242/420 (57%), Gaps = 13/420 (3%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +++V + +++A ++ G+L E +++R + +GNIY G+V VLP M+AAF+DIG Sbjct: 428 DRKMIVRQSDDYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDIG 487 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L+A ++ GE+++ I +++ G ++VQV KDP+G KGARLT+ Sbjct: 488 RGRNAVLYAGEVDWAKYGKEGEDKR------IEHVLKSGDQVLVQVTKDPVGAKGARLTS 541 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I++P R++V+ PG G+S+++ SER+RLKK+V I+RTAAEG E + Sbjct: 542 HISVPGRFVVYSPGGHLSGISRKLAD-SERKRLKKIVENNIPSDASVIVRTAAEGATEED 600 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDS----RL 237 L D LK W + + + LY E L R++RD A+ + + Sbjct: 601 LVRDINRLKVQWEVIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDD 660 Query: 238 TYEALLEFTSEYIPEMTSKLEHYT-GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 Y+ + + PEM S+L H+ + F + ++ ++ +ALERKV L SGG L+ID+ Sbjct: 661 AYDTIKAYVDHVAPEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDR 720 Query: 297 TEAMTTVDINTGAFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 TEAMT +D+NTG F G NL+ T+ N+EA + I RQLRLR++GGII+IDFIDM Sbjct: 721 TEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPT 780 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 +R ++ L + L +DR + V ++LGLV+MTRK+ + +C C GRG + Sbjct: 781 NRELLVRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRR 840 >UniRef50_B8CXZ3 Ribonuclease, Rne/Rng family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXZ3_HALOH Length = 489 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 187/486 (38%), Positives = 301/486 (61%), Gaps = 1/486 (0%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++++N E R A + +L++I IE ++ + IVGN+Y+ RV VLPGMQAAFVDI Sbjct: 1 MVNQIIINSGIKEKRAAILMDNVLEDIVIELDSYKKIVGNVYRARVIDVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK AFLH SDI P + + +K+ + I +++ GQ+LMVQVVK+P+ KGA++T Sbjct: 61 GYDKNAFLHVSDIYPLLDEKQLKLKKEGKLG-IQHVLQPGQELMVQVVKEPIYEKGAKVT 119 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I+LP RYLV +PG +S++I+ ER+RLKK+V + D G IIRT + Sbjct: 120 CKISLPGRYLVLLPGEYRTAISRKIKDFDERDRLKKIVGKLKDPDMGLIIRTNSRYKKAD 179 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L D +YLKR WT++ E + +Y +L + ++RD+ + ++D++ +D Y Sbjct: 180 LLELDYSYLKRTWTQIKENYNNSKAPDLIYEHASLLKTIVRDYLNKDVDKVLIDDESDYR 239 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 LLE + + P++ +++ Y + PIF ++ +E E++RA+ +K+ L SGG+++I+QTEA+ Sbjct: 240 VLLELSEKLAPDLKNRINLYNKKMPIFHVYGIEKELERAIRKKIWLDSGGFIVIEQTEAL 299 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+NTG + G +N TI TN+EA + IARQLRLR++GGIIIIDFIDM H++ V Sbjct: 300 VAIDVNTGKYTGKKNAARTILKTNLEAAREIARQLRLRDIGGIIIIDFIDMKERRHQQEV 359 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L + E+ L+KDR TS+ G + LGL+EMTR++ RE + ++ EC C G+G + + +V Sbjct: 360 LETFEKELAKDRSVTSIQGLTKLGLLEMTRQKVREGLGELMQKECSYCRGKGLILSANSV 419 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 I+R I + + R +V P V +LKG+ L ++ G ++++ + Sbjct: 420 AESIIRNIQLKKASEEFSRAVVECHPLVVSSLKGDNGEVLQKIFKKTGVSLELKPVNSLH 479 Query: 481 QEQFDV 486 E++ + Sbjct: 480 IEKYRI 485 >UniRef50_Q7CZH1 Ribonuclease E n=7 Tax=Alphaproteobacteria RepID=Q7CZH1_AGRT5 Length = 977 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 128/413 (30%), Positives = 207/413 (50%), Gaps = 2/413 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E +K I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A Sbjct: 254 EVPDRVARKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTA 313 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I ++R+RLK++ + + G I+RTA E+ D YL R+W Sbjct: 314 RGGGISRKITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWEN 373 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V +Y E +L +R +RD + ++ I V Y +F +P Sbjct: 374 VRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAK 433 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y PIF +E ++ R L+ +V LKSGGYLII+QTEA+ +D+N+G + Sbjct: 434 VVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHS 493 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 +++T TN+EA + +ARQLRLR+L G+++IDFIDM + + R V L+ L DR + Sbjct: 494 IEETALTTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARI 553 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R S+ C C G G V++ ++ ++R + Sbjct: 554 QVGRISHFGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRN 613 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 + V +P A L + S+ + E G + + + + F + Sbjct: 614 TTHNITVRCTPETALYLLNHKRGSIVDYEGRFGVAIIIAADSSVGAQHFAIDR 666 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 1/102 (0%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + E TRV + G ++E E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQ 101 G ++ FL ++I P + +++ + + R Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDHRRSDD 102 >UniRef50_Q2IVP9 RNAse E n=3 Tax=Bradyrhizobiaceae RepID=Q2IVP9_RHOP2 Length = 1060 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 137/408 (33%), Positives = 221/408 (54%), Gaps = 2/408 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E V + I E++++ Q ++VQVVK+ G KGA LTT ++L RY V MP A Sbjct: 319 EEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTA 378 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I S +R RLK+VV + E G I+RTA + E+ D YL R+W Sbjct: 379 RGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWET 438 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V + + Q +Y E +L +R LRD + E+D I+V Y+ +F +P Sbjct: 439 VRDVTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMHMLMPSNVR 498 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y QP+F VE+++ V+L+SGGY++I+QTEA+ ++D+N+G + Sbjct: 499 AVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHH 558 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA++ +ARQLRLR+L G+I+IDFIDM+ + + R V L L +DR + Sbjct: 559 IEDTALKTNLEASEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARI 618 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R S+ CP C G G V++V +V +++R + + Sbjct: 619 QVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEILMKG 678 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 + +V VA + ++ L ++E + V +P +Q Sbjct: 679 ATHNLIVRTRADVALYVLNQKRGHLRDLETGFRVTLSVVSDPTVTGQQ 726 Score = 86.1 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV + G ++E E R+ + GNIY +V+RV P +QAAF++ Sbjct: 1 MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G ++ FL S+I P + +++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQ 87 >UniRef50_Q92QJ4 Probable ribonuclease E n=1 Tax=Sinorhizobium meliloti RepID=Q92QJ4_RHIME Length = 924 Score = 483 bits (1243), Expect = e-135, Method: Composition-based stats. Identities = 131/413 (31%), Positives = 213/413 (51%), Gaps = 2/413 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E +K I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A Sbjct: 228 EVADRHIRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTA 287 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I + +R+RLK++ + G I+RTA + E+ D YL R+W Sbjct: 288 RGGGISRKITNLQDRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWEN 347 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V +Y E +L +R +RD + ++ I V Y+ F +P Sbjct: 348 VRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKMLMPSHAK 407 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y PIF +E ++ R L+ +V LKSGGY+II+QTEA+ ++D+N+G + Sbjct: 408 VVQPYRDVHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHS 467 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA + +ARQLRLR+L G+I+IDFIDM + + R V L+ L DR + Sbjct: 468 IEDTALQTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARI 527 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R S+ CP C+G G +++ +V ++R I Sbjct: 528 QVGRISHFGLLEMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKN 587 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 + V +P +A L ++ S+ + E G + ++ + + F + Sbjct: 588 TTHDISVRTTPDIALYLLNQKRSSITDYEQRFGVSIFIEADAHVGAQHFAIDR 640 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + ETRV + G ++E E E ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MAEKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD 102 G ++ FL ++I P + +++ + E R + Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEARRDDDE 103 >UniRef50_A8IFL2 Ribonuclease E and G n=6 Tax=Rhizobiales RepID=A8IFL2_AZOC5 Length = 1093 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 137/408 (33%), Positives = 210/408 (51%), Gaps = 2/408 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E Q++ I E++R+ Q ++VQVVK+ G KGA LTT ++L RY V MP A Sbjct: 365 EVPERAPQRRARTYKIQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTA 424 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I + +R+RLK+VV E E G I+RTA + E+ D YL R+W Sbjct: 425 RGGGISRKITNAVDRKRLKEVVQELEVPEGMGIILRTAGANRTKVEIKRDFEYLLRLWET 484 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V E +Y E +L +R +RD E+D I V ++ +F +P Sbjct: 485 VRELTLTSSAPNLVYEEGSLIKRAIRDLYSKEIDEIHVAGEEGFQEARDFMRMLMPSHAK 544 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 + Y QPIF + VE+++ V+LKSGGY++I+ TEA+ ++D+N+G + Sbjct: 545 NVIAYREPQPIFAKYGVEHQLDAMFSPVVQLKSGGYIVINPTEALVSIDVNSGRATREHH 604 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA + IARQLRLR+L G+I+IDFIDM + + R V L+ L DR + Sbjct: 605 IEDTALKTNMEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRSVERKLKDCLKNDRARI 664 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R + CP C G G V++ +V +++R + Sbjct: 665 QVGRISHFGLMEMSRQRIRTGVLESSIEVCPVCGGTGHVRSAASVALQLLRALEEQLLRS 724 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 S + VA + + L E+E + VQ + Q Sbjct: 725 ASHNLIARTRGEVALYVLNHKRAHLRELEDRFSVTLIVQADESVTGHQ 772 Score = 84.5 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV + G ++E E +R+ + GNIY +V+RV P +QAAF++ Sbjct: 1 MANKMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G ++ FL S+I P + +++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRQ 87 >UniRef50_A6LDG7 Ribonuclease G n=21 Tax=Bacteria RepID=A6LDG7_PARD8 Length = 525 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 156/505 (30%), Positives = 263/505 (52%), Gaps = 20/505 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +EL+V+V P E +A ++ L E+ E VG+IY G+V +++PG+ AAF+D+ Sbjct: 1 MISELVVDVQPKEVSIAVLEDKSLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFIDV 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRD-------------------ISELVRQGQ 101 G K AFLH D+ P+ ++ + IS++++ GQ Sbjct: 61 GYKKDAFLHYLDLGPNFNTQQKYLKQLLSDPKKAPVLSKTQILPEIEKNGSISDVLKVGQ 120 Query: 102 DLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY 161 +++VQ+ K+P+ TKG RLT++++ RY+V +P A V VS +I+S ER RL++++ Sbjct: 121 EVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSVSTKIKSSEERARLRQLIQSI 180 Query: 162 CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 221 + I+RT++EG AEL + L + W + + + + +Y E A +LR Sbjct: 181 KPKNFSVIVRTSSEGKRVAELDHELKTLMKRWEDNIVKVPKLKAPAIIYEETARTVALLR 240 Query: 222 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 281 D + I V+ + Y + ++ S P ++ YTG PIFD F V +I+ Sbjct: 241 DIFNPSFQNIYVNDKEVYNNVRDYVSLIAPGREEIVQLYTGELPIFDNFAVTKQIKSLFG 300 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTG-AFVGHRNLDDTIFNTNIEATQAIARQLRLRNL 340 R V KSG YLII+ TEAM +D+N+G G + T + NI A IARQLRLR++ Sbjct: 301 RTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNIAAADEIARQLRLRDM 360 Query: 341 GGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 GGII+IDFIDM +R+++ + +A++ DR K ++ S GL+++TR+R R +++ Sbjct: 361 GGIIVIDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLMQITRQRVRPAMDVD 420 Query: 401 LCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSL 460 +CP+C G GTVK + +I + + + +F ++ P VA + Sbjct: 421 TSEDCPSCFGTGTVKPSILFTDSLEEKIDCLVNKHHVKKFTLHVHPYVAAYVNKGLFPLS 480 Query: 461 AEVEIFVGKQVKVQIEPLYNQEQFD 485 + ++ +KV ++ Sbjct: 481 MKWKMKYTHGLKVIPNQSLAFLEYK 505 >UniRef50_B9JVK9 Ribonuclease E n=40 Tax=Rhizobiales RepID=B9JVK9_AGRVS Length = 1035 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 129/411 (31%), Positives = 207/411 (50%), Gaps = 2/411 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E + I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A Sbjct: 280 EVPDRVRRTPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTA 339 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I + ++R+RLK+V + G I+RTA + E+ D YL R+W Sbjct: 340 RGGGISRKITNPADRKRLKEVARDLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWEN 399 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V +Y E +L +R +RD + ++ I V Y +F +P Sbjct: 400 VRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYREAKDFMKMLMPSHAK 459 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y PIF +E ++ R L+ +V LKSGGY+II+QTEA+ ++D+N+G + Sbjct: 460 VVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREYS 519 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA + +ARQLRLR+L G+I+IDFIDM + + R V L+ L DR + Sbjct: 520 IEDTALQTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARI 579 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R S+ C C G G +++ +V ++R + Sbjct: 580 QVGRISHFGLLEMSRQRIRASVLESTTQVCQHCSGTGLIRSQSSVALHVLRGVEEYLLKS 639 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + V P A L + S+ + E G + + + + F + Sbjct: 640 TTHDITVRTLPETALYLLNHKRGSIVDYENRFGVSIIIDSDASVGHQHFAI 690 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + E TRV + G ++E E + ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISEL 96 G ++ FL ++I P + +++ + E Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEEH 97 >UniRef50_B1H0J1 Ribonuclease G n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0J1_UNCTG Length = 488 Score = 480 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 172/489 (35%), Positives = 275/489 (56%), Gaps = 18/489 (3%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E++VN T E+RVA +D G L + IER I+ NIYKGRV ++P + + FVDIG Sbjct: 15 KKEIIVNRTFEESRVAILDNGKLFNLFIERRESEKILNNIYKGRVKNIVPALNSLFVDIG 74 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A+L DI+ R +++ GQD+MVQV K+P+ KGA++T Sbjct: 75 FGRGAYLDVCDILKEH-------------RSKKNMIKAGQDIMVQVYKEPIHNKGAKVTM 121 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE-QGGFIIRTAAEGVGEA 180 I+L R LV+MP ++++GVS+ I+ + E RLK + AE + GG IIRT AE +A Sbjct: 122 AISLTGRLLVYMPFSNNIGVSKNIKDKHEYNRLKSMTAELKKDISGGIIIRTKAEKATKA 181 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 E+ ++ YL R+W + ER + ++ +L L + + D+ ++ +R+DS+ + Sbjct: 182 EIKNEIKYLIRLWASITERFDDAKPMSLIHKDLGLVFQTVIDYFSDDVIFMRIDSQKELK 241 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + +F +PE ++ Y R PIF + +E EI+R KV L SGGYLII + E++ Sbjct: 242 DVTDFVEIVLPEFLDRIVFYDDRTPIFKKYGIEEEIKRLCSNKVWLSSGGYLIIQEAESL 301 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+N+G F +DT TN+EA + IARQLRLRN+GGII+IDFIDM +RR+V Sbjct: 302 CAIDVNSGKFTAKSTQEDTAVITNLEAAEEIARQLRLRNIGGIIVIDFIDMKKASNRRKV 361 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L +L +A D+ K + + LGL+EMTR+R R+S+ +L + CP CHG V + E++ Sbjct: 362 LETLRKATKVDKAKIEIWPITRLGLIEMTRERKRKSLFSILGDICPVCHGLSFVLSKESI 421 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 + EI ++ R + + V E ++ A +E G + ++ Sbjct: 422 FINVCDEIKQLKIDGYDGRIKIKLNIDVIEYFMKKK----ARLEELFGVEFDIEASTELL 477 Query: 481 QEQFDVVMM 489 +E++ ++ + Sbjct: 478 REEYKILYL 486 >UniRef50_C0WDS2 Ribonuclease n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDS2_9FIRM Length = 468 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 162/484 (33%), Positives = 258/484 (53%), Gaps = 26/484 (5%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 + V+V P ETR+ + L++ +ER +VGNIY+GRVS V+PG+QAAF+D+ + K Sbjct: 4 IFVSVKPEETRMGLVFDSKLRDFAVERRGEGNLVGNIYRGRVSNVVPGIQAAFIDLNVGK 63 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 FL + + +GQ L+VQVVKD GTKG +T ++T Sbjct: 64 NGFLTLHK---------------------QDRLTEGQMLLVQVVKDCRGTKGPGVTRNVT 102 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 LP RY+V P + + +S++I +S R RL+ +V + E G +IRTAA E+ + Sbjct: 103 LPGRYIVLEPFGNRISLSRKITCKSLRTRLRTLVQKSLPEGMGVVIRTAAAKAAAEEIEN 162 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 D L W ++ R K + LY EL L+ R++RD+ ++ +I VD TY + E Sbjct: 163 DLRQLLASWQVLLRRSKVGRGPQLLYRELDLSIRMIRDYVTKDVQKIIVDDEATYHTVEE 222 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 + + E Y ++ +F + + EI +R V L GG L+ D TEAMT +D Sbjct: 223 LLQDMG-LTEIRTEWYQEKEDLFTHYGLNEEIASISDRVVPLPGGGSLVFDYTEAMTVID 281 Query: 305 INTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSL 364 +N+G + + ++T TN EA IARQLRLR++GGII+ DFIDM ++ + +L L Sbjct: 282 VNSGHYSTGSDREETSLATNREAALEIARQLRLRDIGGIIVADFIDMERKEEQEEILDLL 341 Query: 365 EQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEI 424 + + DR+K V G +AL LVEMTR + R ++ + CP C G G V++ ETV EI Sbjct: 342 RREFAMDRMKPRVMGMTALNLVEMTRMKARRNLFGTVYTTCPMCQGSGRVESPETVYVEI 401 Query: 425 MREIVRVHHAYD-SDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 R + ++ + + ++ P V E ++ H + ++E G ++++ P Sbjct: 402 RRRLRSLYLDHAMARSLVLSVHPLVEEWIR---IHGMKDMEQEFGAKIRLVSNPSLAVGV 458 Query: 484 FDVV 487 F ++ Sbjct: 459 FTLL 462 >UniRef50_Q1D0P4 Ribonuclease, Rne/Rng family n=7 Tax=Proteobacteria RepID=Q1D0P4_MYXXD Length = 936 Score = 480 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 178/427 (41%), Positives = 261/427 (61%) Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G + + E+ K I +L++ GQ+++VQ+ KDP+GTKGARLT Sbjct: 327 GEKDKGRRPQEEKRRGDKHEDKEKAKPRRTDKIEDLLKVGQEVVVQISKDPIGTKGARLT 386 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 + I++P R+LVFMP HVG+S+RI +E ER RL+ +V GFI+RT AE V + Sbjct: 387 SHISIPGRHLVFMPTVDHVGISRRISNEKERRRLRDIVDRLRPPGTGFIVRTVAENVPQE 446 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 +L SD +L VW +V+ + ++ L+ +L L R RD +++++ VD R YE Sbjct: 447 KLESDIRFLIEVWNQVVRKNEKRGGPGLLHPDLDLILRATRDLFAHDVEKLVVDDREEYE 506 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +L F + P + ++ + G +FD + +E E+QRA +RKV LKSGGYLIIDQ EA+ Sbjct: 507 RILGFVTAQDPALRDRVALHEGDDTVFDAYGIEQELQRATQRKVWLKSGGYLIIDQAEAL 566 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+N+G +VG ++L++TI N+EA + I QLRLRN+GGIII DFIDM +R +V Sbjct: 567 TAIDVNSGRYVGKKSLEETITKINVEAAKEIVYQLRLRNIGGIIICDFIDMEKAQNRDKV 626 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 +L++AL +D+ KT+V S LGLVEMTRKR RESI +L +CP C G G VKT TV Sbjct: 627 FKALQEALGRDKAKTNVLRISELGLVEMTRKRVRESIGRMLHEDCPYCDGNGFVKTATTV 686 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 YEI REI R Y ++ + VA L+GEE + L + K ++V+ + Y+ Sbjct: 687 AYEIFREIRREAPGYKDSTLVINCNAEVARLLQGEERNELRHLMDRYNKSIQVKAQQNYH 746 Query: 481 QEQFDVV 487 +EQ+D+ Sbjct: 747 REQYDIY 753 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 45/73 (61%), Positives = 60/73 (82%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M++ L++N ETRVA ++GG + E ++ER+ +G+VGNIYKGRV RVLPGMQAAFVDI Sbjct: 1 MSSILVINAAGRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVDI 60 Query: 61 GLDKAAFLHASDI 73 GL+KAAFL+ SD+ Sbjct: 61 GLEKAAFLYVSDV 73 >UniRef50_C0R3W8 Ribonuclease, Rne/Rng family protein n=9 Tax=Wolbachia RepID=C0R3W8_WOLWR Length = 590 Score = 479 bits (1234), Expect = e-134, Method: Composition-based stats. Identities = 142/531 (26%), Positives = 253/531 (47%), Gaps = 50/531 (9%) Query: 3 AELLV---NVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 LL+ + +E RVA + E E + ++ + GNIY + R+ P +QA F++ Sbjct: 6 KRLLLIENSTCSNEVRVALSVNNKVVEFEQEFKEKKQLRGNIYVAYIKRIEPSLQAVFIE 65 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK--------------------------------- 86 G +K FL S+I + +E++ Sbjct: 66 YGKNKQGFLSFSEISLDYFNIPEKEKETIFESYSNDDYTEKGNDTIANVSSDSAASKNVN 125 Query: 87 -----------QFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 + + +++ Q ++VQ+ K+ G KGA TT ITL RY VFMP Sbjct: 126 ESGSGFVREVPLYKKYKLQDVISVNQKVLVQLTKEERGNKGASFTTYITLVGRYCVFMPN 185 Query: 136 A-SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 + S GVS+RIE + R++LK++++ ++ G I+RT G + E+ D YL +W Sbjct: 186 SMSKGGVSRRIEDANVRKQLKEILSSINLPKRSGLIVRTVGSGKNKKEIEQDYNYLSSLW 245 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 + + +Y E + R +RDF + + V + +EA+ ++ + + Sbjct: 246 QSIQKNAFSVNVPSLIYNEADVIMRSVRDFCSDGI-EVIVSGKEAFEAVRQYANNALKGS 304 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 + Y G PIF + +E++I +VEL SGG LII TEA ++D+N+G G Sbjct: 305 KLRYRLYRGYAPIFTYYGIEDQISELYSNRVELPSGGSLIITLTEAFVSIDVNSGKMTGE 364 Query: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 ++++T + TN+EA I+RQ+ LR L G+I++DFIDM + R V +++QA D+ Sbjct: 365 DSIEETAYRTNMEAVPEISRQVNLRGLSGLIVVDFIDMLKYQYCRAVESAIKQAFKDDKA 424 Query: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 K + + GL+ +R+R + +I+ + EC C G G VK+ E + I+R++ + + Sbjct: 425 KVQFSYINDFGLMVFSRQRIKPNIQEINTTECLHCKGTGRVKSNEVIVSSILRDLQHIAN 484 Query: 434 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQF 484 + F + A AV + + ++++ +E + V I+ + F Sbjct: 485 KNRNKSFDLVAHSAVIAHIFNNKRNTVSTIEKEFNITLNVSIDNSLDVNTF 535 >UniRef50_B9JDP7 Ribonuclease E protein n=3 Tax=Alphaproteobacteria RepID=B9JDP7_AGRRK Length = 960 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 129/413 (31%), Positives = 209/413 (50%), Gaps = 2/413 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E ++K I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A Sbjct: 240 EVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTA 299 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I + +R+RLK++ G I+RTA + E+ D YL R+W Sbjct: 300 RGGGISRKITNPQDRKRLKEIAKMLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWEN 359 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V +Y E +L +R +RD + ++ + V Y +F +P Sbjct: 360 VRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKDFMKMLMPSHAK 419 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y PIF +E ++ R L+ +V LKSGGYLI++QTEA+ ++D+N+G + Sbjct: 420 VVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNSGRSTREHS 479 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA +ARQLRLR+L G+I+IDFIDM + + R V L++ L DR + Sbjct: 480 IEDTALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKNDRARI 539 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R S+ C C G G V++ +V ++R I Sbjct: 540 QVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEEYLLKN 599 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 + V +P +A L + ++ + E G + + + + F + Sbjct: 600 TTHDITVRTTPEIALYLLNHKRQTIVDYESRFGVAIIIGADNAVGAQHFAIDR 652 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + E TRV + G ++E E + ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISEL 96 G ++ FL ++I P + +++ + E Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEH 97 >UniRef50_D1BNE2 Ribonuclease, Rne/Rng family n=3 Tax=Veillonella RepID=D1BNE2_VEIPT Length = 475 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 166/489 (33%), Positives = 270/489 (55%), Gaps = 21/489 (4%) Query: 4 ELLVNVTPSETRVAYI-DGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++LVNV E R+A I + G L + +ER + ++YKG V VL GMQAAFVDIG Sbjct: 3 KILVNVMREEIRMAVIDEEGQLVDFVLERTDDSHMANHMYKGTVKNVLNGMQAAFVDIGG 62 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + A+L+ +Q + I + GQ ++VQVVK+ + KGAR+T D Sbjct: 63 SQNAYLNL---------------QQGKEQKILPRLSVGQQILVQVVKEEMLGKGARVTAD 107 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 ++L R++V +P + + +S++I E+ R +L+++ A Y E GFIIRTAA E+ Sbjct: 108 VSLAGRFMVLLPYSEGMHISKKITDEALRSKLQELAAPYVQEGCGFIIRTAAAKASADEI 167 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D YL R W V++R K ++ LY + R++RD+A ++ I VDS + L Sbjct: 168 GRDMEYLWRTWQHVLKRFKVAKSGTDLYSDADFWFRLVRDYAHRNVEEIIVDSDMGESRL 227 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 L+ K+ + PIF +E +++ + R + L SGG + ID TEA+T Sbjct: 228 LDLLGHGPTSQQIKVTRHRDSTPIFKANHIEPQLEDLISRDINLPSGGSIRIDHTEALTV 287 Query: 303 VDINTGAFVGHRN-LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 D+N+ + G N L+D F N EA + I RQLRLR++GGII++DFIDM +++H++ +L Sbjct: 288 FDVNSAHYTGKSNKLEDLAFTVNKEAAKEICRQLRLRDIGGIIVVDFIDMKDKEHQQELL 347 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 L D++KT V G S+LGLVEMTRKR R+ ++ ++ + CP C G G + + TV Sbjct: 348 KLLGVQAKLDKMKTVVCGISSLGLVEMTRKRARQGLQTLMFDTCPQCGGTGYMLSGRTVY 407 Query: 422 YEIMREIVRVHHAYDSD-RFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 +I+R I + + + P VA+ L L ++ +G+++ + + P + Sbjct: 408 MQIVRRIRELFKSGRIKTNLEIEVHPEVAQYLTK---AVLEDLGESIGRKISIVVNPQIS 464 Query: 481 QEQFDVVMM 489 +E + ++ + Sbjct: 465 REGYSLMAI 473 >UniRef50_B5ZYQ5 Ribonuclease, Rne/Rng family n=7 Tax=Alphaproteobacteria RepID=B5ZYQ5_RHILW Length = 965 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 130/413 (31%), Positives = 212/413 (51%), Gaps = 2/413 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E ++K I E++++ Q L+VQV K+ G KGA LTT ++L RY V MP A Sbjct: 252 EVPDRVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTA 311 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I + ++R+RLK++ + G I+RTA + E+ D YL R+W Sbjct: 312 RGGGISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWEN 371 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V +Y E +L +R +RD + ++ I V Y +F +P Sbjct: 372 VRTLTLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKMLMPSHAK 431 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y PIF +E ++ R L+ +V L+SGGYLI++QTEA+ ++D+N+G + Sbjct: 432 VVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRSTREHS 491 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA + IARQLRLR+L G+I+IDFIDM + + R V L++ L DR + Sbjct: 492 IEDTALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKNDRARI 551 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R S+ C C G G V++ +V ++R I Sbjct: 552 QVGRISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEEYLLKN 611 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 + V +P +A L + ++ + E G + + + + F + Sbjct: 612 TTHNISVRTTPDIALYLLNHKRQTIIDYENRFGVAIVIDADGSVGAQHFAIDR 664 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Query: 1 MTAELLVNVTPSE-TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + E TRV + G ++E E + ++ I GNIY +V+RV P +QAAFVD Sbjct: 1 MADKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISEL 96 G ++ FL ++I P + +++ + E Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEH 97 >UniRef50_C8NQN5 Ribonuclease E n=5 Tax=Corynebacterium RepID=C8NQN5_COREF Length = 1148 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 165/437 (37%), Positives = 253/437 (57%), Gaps = 24/437 (5%) Query: 1 MTAELLVNVTPSE------TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQ 54 M ++V T+V ++ +L E + +++ +VGNIY GRV VLP M+ Sbjct: 350 MERRMIVRERQRTDGTGLVTQVGVLEDDLLVEQFVTSDSQSSMVGNIYLGRVQNVLPSME 409 Query: 55 AAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGT 114 AAF+DIG + L+A ++ + G ++ I + ++ GQ ++VQV KDP+G Sbjct: 410 AAFIDIGKGRNGVLYAGEVDWKAAGLGGRGRR------IEQALKSGQKVLVQVTKDPVGH 463 Query: 115 KGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAA 174 KGARLTT I+L RYLV++PG G+S+++ ER+RLK+++ QGG IIRTAA Sbjct: 464 KGARLTTQISLAGRYLVYVPGGRSAGISRKLPGP-ERKRLKEILGRVVPPQGGTIIRTAA 522 Query: 175 EGVGEAELASDAAYLKRVWTKVMERKKRPQT-----RYQLYGELALAQRVLRDFADAELD 229 EGV E +A+D L +W ++ ER K+ + +Y E + +V+RD + + Sbjct: 523 EGVSEENIAADVNRLHTLWEQIQERTKQEKKSRNTRPVTMYEEPDMLVKVIRDLFNEDFT 582 Query: 230 RIRVDSRLTYEALLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVE 285 + VD + + + P++ S++EH+ + F+ F + +++ A+ RKV Sbjct: 583 SLIVDGDRAWNTVRAYIQSVAPDLVSRVEHFDRADYDGKDAFEAFGLNTQLEEAMSRKVN 642 Query: 286 LKSGGYLIIDQTEAMTTVDINTGAFVGHR--NLDDTIFNTNIEATQAIARQLRLRNLGGI 343 L SGG LIID+TEAMT +DINTG +VG NL++T+ NIEA + I RQLRLR++GG+ Sbjct: 643 LPSGGSLIIDKTEAMTVIDINTGRYVGKGVGNLEETVTLNNIEAAEEIVRQLRLRDIGGM 702 Query: 344 IIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 I+IDFIDM ++R VL L +AL DR + V+ ++LGLV+MTRKR + + Sbjct: 703 IVIDFIDMVLPENRDLVLRRLNEALENDRTRHQVSEVTSLGLVQMTRKRIGAGLLETFSS 762 Query: 404 ECPTCHGRGTVKTVETV 420 EC C GRG V + V Sbjct: 763 ECEHCAGRGLVIHPDPV 779 >UniRef50_D2RM73 Ribonuclease, Rne/Rng family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM73_ACIFE Length = 476 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 168/486 (34%), Positives = 260/486 (53%), Gaps = 26/486 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 + V+V P ETR+ ++ L++ +ER + +VGN+Y+ RV V+PG+QAAFVD+ Sbjct: 2 NTIFVSVRPEETRMGTVEDDQLRDYAVERNSADNLVGNVYRARVCNVVPGIQAAFVDLNT 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K FL E + +GQ L+VQVVKD G+KG +T D Sbjct: 62 GKNGFLTLKK---------------------GETLSEGQMLLVQVVKDARGSKGPAVTRD 100 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 ITLP RY+V P S V +S++I +++R+ L+ E + G ++RTAA E E+ Sbjct: 101 ITLPGRYVVLEPYGSRVSLSRKISCKTKRKELRDWARELLPDHMGLVLRTAAAHAEEDEI 160 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 +D L R W ++ R K + LY EL LA R++RD+ ++RI VD T L Sbjct: 161 RADLEQLLRNWDVLVRRSKVGRGPQLLYRELDLAIRLVRDYVTDRVERIIVDEEKTCRRL 220 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 E + +++ Y G++ +F + ++ +I+ +R V L GGYL+ID TEAMT Sbjct: 221 QEMLRDMG-LPGIQVKLYRGKEDLFTFYRLDEDIESLSDRVVWLPGGGYLVIDCTEAMTV 279 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+G F + D T TN EA + IARQLRLR++GGII+ DFIDM+ E+ + +L Sbjct: 280 IDVNSGKFSTGADRDATSMATNREAAREIARQLRLRDIGGIIVADFIDMDREEEQEEILQ 339 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L++ + D++K V + L LVEMTR + R+++ +L CP C G G V++ ETV Sbjct: 340 ILKKEFASDKMKPKVIDLTQLNLVEMTRMKARKNLAGILYTTCPLCGGSGRVESPETVYV 399 Query: 423 EIMREIVRVHHAYD-SDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQ 481 EI R + S L+ P V L+ + L ++E +K+ +P Sbjct: 400 EIRRRLRSTFLQGKMSHALLLTVHPLVYSWLRQQG---LRDMEQEFHCSLKLASDPSLEV 456 Query: 482 EQFDVV 487 F ++ Sbjct: 457 GVFTLL 462 >UniRef50_C9RQU1 Ribonuclease, Rne/Rng family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQU1_FIBSS Length = 511 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 166/494 (33%), Positives = 267/494 (54%), Gaps = 10/494 (2%) Query: 1 MTAE----LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAA 56 M + +L++ TP E R+A ++ G L E+ +E + ++GNIYKG V +VLP ++AA Sbjct: 1 MANKCKRGILISKTPYEKRIAIMEDGELAELVVEGVSSNRVLGNIYKGVVQKVLPALKAA 60 Query: 57 FVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVR------DISELVRQGQDLMVQVVKD 110 F+DIGL+KA FLH D M E + E I E++++GQ++MVQVVK+ Sbjct: 61 FIDIGLEKAGFLHQEDAMDRNELLRREYGDDDDEGDASKEISIDEILQEGQEIMVQVVKE 120 Query: 111 PLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFII 170 P+ TKGARLTT ++ R+LV MPGA+ VGVS+R +R KKVV G+I+ Sbjct: 121 PISTKGARLTTHLSFAGRFLVCMPGANFVGVSKRERDPVKRREFKKVVRRLKGRDVGYIV 180 Query: 171 RTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDR 230 RT E E+ L+ W + + +Y E ++ +R++ D Sbjct: 181 RTNGLNESEFEINKQMRELESKWEQTKYNFETMPPETCIYEESDSIEQTVREYFGDNTDY 240 Query: 231 IRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGG 290 + +D+R Y AL ++ P+ K++ ++ + +F+ F +EN+ R+L+R+V L GG Sbjct: 241 VYIDNRDEYFALRDYLKVLSPDKLDKVKLWSSSESLFEYFKIENDYARSLQRQVPLPRGG 300 Query: 291 YLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFID 350 L+I+QTEA+ ++D+NTG V ++ I TN++A IA+QLRLR++GG+IIIDFID Sbjct: 301 NLVIEQTEALVSIDVNTGPKVHGKDQGKIILETNLDACHEIAKQLRLRDVGGLIIIDFID 360 Query: 351 MNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHG 410 M ++ R V +A+ +D+ S S GL+E+TRKR R ++ CP C+G Sbjct: 361 METDEDREAVYQEFRKAIRRDKAPISPAPISQFGLMEVTRKRVRVNLMTEKTECCPVCNG 420 Query: 411 RGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQ 470 G + T+E+ I R + R H + S V + L + + +E + Sbjct: 421 SGRIATLESTLGMIDRWLARAHTKGRLREVTLVVSAPVIDVLCKDLNRMFNYLEYKHNIK 480 Query: 471 VKVQIEPLYNQEQF 484 + + + + QF Sbjct: 481 ISLVEDEYAHINQF 494 >UniRef50_B8EPB2 Ribonuclease, Rne/Rng family n=1 Tax=Methylocella silvestris BL2 RepID=B8EPB2_METSB Length = 1080 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 136/409 (33%), Positives = 212/409 (51%), Gaps = 2/409 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E V Q+ I E++++ Q L+VQVVK+ G KGA LTT ++L RY V MP A Sbjct: 331 EEVPVRPQRYRRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTA 390 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I ++R+RLK + E E G I+RTA + E+ D YL R+W Sbjct: 391 RGGGISRKITDSTDRQRLKSIAQELEVPEGMGVILRTAGASRTKPEVKRDFEYLLRMWET 450 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V E + +Y E +L +R +RD + ++D I V Y +F +P + Sbjct: 451 VRETTLKSSAPTLVYEEGSLIKRAIRDLFNKDIDDIVVAGDKGYREARDFMRLLMPSHVN 510 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y QPIF DVE ++ +V LKSGGY++I+QTEA+ +D+N+G N Sbjct: 511 SVQPYRDAQPIFSKSDVETQLDAMFLNQVTLKSGGYIVINQTEALVAIDVNSGRSTREHN 570 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 ++DT TN+EA +ARQLRLR+L G+I++DFIDM + R V L+ AL DR + Sbjct: 571 IEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEEGRNNRAVERRLKDALKNDRARI 630 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R + CP C G G +++ ++ ++R Sbjct: 631 QVGRISHFGLLEMSRQRIRTGVLEGSTELCPHCSGSGILRSTASIALHVLRVAEDALLKS 690 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQF 484 S ++ AVA + E+ L ++E G V ++++ + Sbjct: 691 ASHDLIIRTRSAVALYILNEKRAHLRDLERRFGVAVSIEVDDSLIGSVY 739 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 1/102 (0%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + P ETRV + G ++E E +++ + GNIY +V+RV P +QAAFVD Sbjct: 1 MANKMLIDASHPEETRVVVLRGNRVEEFDFESASKKQLRGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQ 101 G ++ FL S+I P + +++ + R+ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVVDRQALIEEEARAQQREAD 102 >UniRef50_Q0BVH1 Ribonuclease E n=2 Tax=Acetobacteraceae RepID=Q0BVH1_GRABC Length = 949 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 138/436 (31%), Positives = 219/436 (50%), Gaps = 7/436 (1%) Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G D+ AS E + I E++++ Q L++QVVK+ G KGA L+ Sbjct: 222 GDDQEESRQASRPARQKEDRERRSPRFLRNYKIQEVIKRRQILLIQVVKEERGNKGAALS 281 Query: 121 TDITLPSRYLVFMPGAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVG 178 T I+L RY V MP + GVS++I S ++R RLK ++ G I+RTA Sbjct: 282 TYISLAGRYCVLMPNSPRGGGVSRKITSATDRRRLKDIIGALEIPRGMGIIVRTAGGNRP 341 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 +AE+ D YL R+W + + R ++ E +L +R +RD + ++ + VD Sbjct: 342 KAEIMRDCEYLLRLWDDIRDITLRSSAPALIHEEASLIKRAIRDVYTSTIEEVLVDGEEG 401 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGR-----QPIFDLFDVENEIQRALERKVELKSGGYLI 293 + A + +P K+ + QP+F + VE+++ L V LKSGGYL+ Sbjct: 402 WRAARDIMRMLMPSHARKVICWNADKERAGQPLFAHYQVESQLDAILAPNVSLKSGGYLV 461 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 I+Q EA+ +D+N+G R +++T TN+EA +ARQLRLR+L G+I+IDFIDM + Sbjct: 462 INQAEALVAIDVNSGRSTKERGIEETALRTNLEAADEVARQLRLRDLAGLIVIDFIDMES 521 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGT 413 H V L++AL DR + V S+ GL+EM+R+R R S+ CP C+G G Sbjct: 522 RKHNGMVERRLKEALKNDRARIQVGQISSFGLLEMSRQRLRPSLTETSMITCPHCNGLGL 581 Query: 414 VKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKV 473 V+T E ++R I +V+A+ VA + LA +E G +V Sbjct: 582 VRTTEGASVHVLRAIEEEGARRRYAEIMVHAAADVAFYILNNRRDFLATLESRFGMKVLF 641 Query: 474 QIEPLYNQEQFDVVMM 489 + ++ Q + + Sbjct: 642 SADTQFSGSQLRIEKI 657 Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT ++L++ + ETRV +DG L++ +E +R+ I GNIY +V RV P +QAAFV+ Sbjct: 49 MTKKMLIDASHAEETRVVVMDGNRLEDFDVEAASRKQIKGNIYLAKVVRVEPSLQAAFVE 108 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQF 88 G ++ FL S+I P + ++++ Sbjct: 109 YGGNRHGFLAFSEIHPDYYQIPVADRQRL 137 >UniRef50_C6ADR1 Ribonuclease E n=5 Tax=Rhizobiales RepID=C6ADR1_BARGA Length = 876 Score = 477 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 136/466 (29%), Positives = 226/466 (48%), Gaps = 13/466 (2%) Query: 31 REARRGIVGNIYKGRVSR--------VLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAG 82 R ++ N+ + + +A DI D+ + A DI Sbjct: 118 RRTKKNGKNNVIAADIENDITSETTIIDNTEEALNADISYDEIEMVGAEDIREELPIY-- 175 Query: 83 EEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGV 141 ++KQ I E++++ Q L+VQV+K+ G KGA LTT ++L RY V MP A G+ Sbjct: 176 -QRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGI 234 Query: 142 SQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERK 200 S++I + +R+RLK++V E + G I+RTA +AE+ D YL R+W + Sbjct: 235 SRKITNVQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLT 294 Query: 201 KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHY 260 ++ E L +R +RD + + I V Y +F +P ++ Y Sbjct: 295 LESTAPCLVHEESNLIKRSIRDLYNKNISEILVSGDQGYREAKDFMRMLMPSHAKVVQPY 354 Query: 261 TGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTI 320 PIF ++E ++ + L+ +V LKSGGYL+I+QTEA+ +D+N+G +++ T Sbjct: 355 RDPTPIFARNNIEIQLDKMLQPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEFSVEKTA 414 Query: 321 FNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGF 380 TN+EA + +ARQLRLR+L G+I+IDFIDM E + + V L+ L DR + V Sbjct: 415 LQTNLEAAEEVARQLRLRDLAGLIVIDFIDMLEERNVKLVEKKLKDCLKNDRARIQVGHI 474 Query: 381 SALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRF 440 S GL+EM+R+R R S+ CP C G G +++ ++ +MR I Sbjct: 475 SHFGLLEMSRQRIRISVLESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLHNSQYNI 534 Query: 441 LVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 +V A A + + + L +E + ++ + + + Sbjct: 535 IVRTPVATALYVLNHKRNILVNLETRFKLNISIEADDSIGTQHLVI 580 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 3/116 (2%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++L++ + P ETRV + G ++E+ E E R+ + GNIY R++RV P +QAAFV+ Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHRKQLKGNIYLARITRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTK 115 G ++ FL S+I P + ++ E G++ + ++ K Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRLALLEE--EEKAAVGENSVDSFTEEATKNK 114 >UniRef50_B5ZDP7 Ribonuclease, Rne/Rng family n=12 Tax=Alphaproteobacteria RepID=B5ZDP7_GLUDA Length = 1009 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 135/412 (32%), Positives = 210/412 (50%), Gaps = 3/412 (0%) Query: 81 AGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGA-SHV 139 + I E++R+ Q L+VQVVK+ G KGA LTT I+L RY V MP + Sbjct: 153 QRRIARFLRNYKIQEVIRRRQILLVQVVKEERGNKGAALTTYISLAGRYCVLMPNSLRGG 212 Query: 140 GVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVME 198 GVS++I S ++R RLK V+AE I+RTA E+ D YL R+W + + Sbjct: 213 GVSRKITSVADRRRLKDVIAELQIPRGMAMIVRTAGAQRPRPEIMRDCEYLLRLWDDIRD 272 Query: 199 RKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLE 258 +Y E +L +R +RD ++ I VD +++ EF +P+ K++ Sbjct: 273 HTMHSVAPALIYEEASLIKRAIRDIYTRDVGEILVDGEAGWKSAREFMRMLMPQSAPKVK 332 Query: 259 HYTGR-QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLD 317 + QP+F F+VE + L V+L+SGGYL+I+Q EA+ +D+N+G RN++ Sbjct: 333 CWRDGGQPLFSHFNVEGLLDSMLSPTVQLRSGGYLVINQAEALVAIDVNSGRATRERNIE 392 Query: 318 DTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSV 377 +T TN+EA + +ARQLRLR+L G+I+IDFIDM + H V L+ AL DR + V Sbjct: 393 ETALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMESRKHNGMVERRLKDALRTDRARIQV 452 Query: 378 NGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDS 437 S GL+EM+R+R R SI CP C G G ++ E+ ++R + + Sbjct: 453 GAISHFGLLEMSRQRLRPSIAESTFTPCPHCQGTGIIRGTESAALHVLRAVEEEGARRRA 512 Query: 438 DRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM 489 V+ + +A + + L+E+E V + Q + + Sbjct: 513 AEITVHVAAEIALYILNNKRAWLSEIEKRHKMHVVFSPDASLLPPQLRIERV 564 Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M +L++ T ETRV +DG L++ +E A++ + GNIY +V RV P +QAAFV+ Sbjct: 1 MNKRMLIDTTHAEETRVVVMDGNRLEDYDVEASAKKQLKGNIYLAKVIRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQF 88 G ++ FL S+I P + ++++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADREKL 89 >UniRef50_Q3J4J9 RNAse E n=6 Tax=Rhodobacteraceae RepID=Q3J4J9_RHOS4 Length = 936 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 126/412 (30%), Positives = 215/412 (52%), Gaps = 2/412 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E + + + I E+++ Q ++VQVVK+ G KGA LTT ++L RY V MP A Sbjct: 196 EEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTA 255 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I ++R++LK++ +E E G IIRTA + E+ D YL R+W + Sbjct: 256 RGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRRDYEYLLRLWEQ 315 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 + + + +Y E L +R +RD + E++ + V+ Y +F +P Sbjct: 316 IRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYRTAKDFMRMIMPAHAR 375 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y P+F + VE+ + V+LKSGGY++I TEA+ +D+N+G + Sbjct: 376 QVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAIDVNSGRATKEGS 435 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 +++T TN+EA + +ARQLRLR+L G+I+IDFIDM + V L+ L DR + Sbjct: 436 IEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKRLKDKLKTDRARI 495 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R + C CHG G +++ +++ +++R++ Sbjct: 496 QVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQVLRQLEEEGTRK 555 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 S L+ A AV L + +A +E G V+V+ +P + + + Sbjct: 556 RSKEVLLRAPIAVVNFLMNSKREHIAMIEARYGMAVRVEADPSLSSPDYVIE 607 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T P ETRV +DG ++E E +R + GNIY +V+RV P +QAAFVD Sbjct: 1 MAKKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G ++ FL ++I P + ++K Sbjct: 61 YGGNRHGFLAFAEIHPDYYQIPVADRK 87 >UniRef50_C3PI06 Ribonuclease E n=3 Tax=Corynebacterium RepID=C3PI06_CORA7 Length = 1062 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 155/417 (37%), Positives = 236/417 (56%), Gaps = 17/417 (4%) Query: 14 TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDI 73 T+V ++ +L E + E +GNIY GRV VLP M+AAFVDIG + L+A DI Sbjct: 368 TQVGVLEDDLLVEHFVTTETHPSQIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGDI 427 Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 + G + + ++ G ++VQV KDP+G KGARLTT I+L R+LV++ Sbjct: 428 DWRALGIGGRSR------KVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRFLVYV 481 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 PG G+S+++ ER+RLK ++ GG IIRTAAE V E ++ASD L +W Sbjct: 482 PGGRSAGISRKL-PAPERKRLKGILERVIPGDGGAIIRTAAENVSEEDIASDVNRLHSLW 540 Query: 194 TKVMERKKRPQT-----RYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 + R + LY E L +V+RD + + + VD + +Y + + Sbjct: 541 EDISARAAHEKATKGAKPVTLYEEPDLLIKVVRDLFNEDFSTLVVDGKRSYNTVSAYVDS 600 Query: 249 YIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 ++ ++ Y + F + ++ ++Q+AL RKV L SGG L+ID+TEAMT +D Sbjct: 601 MAHDLADRVVRYDAREHDGEDAFSAYRIDEQLQKALGRKVWLPSGGTLVIDRTEAMTVID 660 Query: 305 INTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 +NTG F G NL++T+ N+EA + I RQ+RLR++GG+I++DFIDM +++ VL Sbjct: 661 VNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLPENQDLVLRR 720 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L++AL +DR + V+ ++LGLV+MTRKR + EC CHGRG + V Sbjct: 721 LKEALGRDRTRHQVSEVTSLGLVQMTRKRVGTGLIETFSTECEACHGRGIIIHEYPV 777 >UniRef50_B1VGM2 Ribonuclease E n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VGM2_CORU7 Length = 1190 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 153/434 (35%), Positives = 246/434 (56%), Gaps = 23/434 (5%) Query: 3 AELLVNVTPSE------TRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAA 56 +++V T+V ++ G L E + + ++ +VGNIY GRV VL M+AA Sbjct: 379 RQMMVRDAERHDHTGLTTQVGVVEDGQLVEHFVTSDTQQSMVGNIYLGRVQNVLASMEAA 438 Query: 57 FVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKG 116 F+DIG + A L+AS++ H+ + R I + +R G +MVQV+KDP+G KG Sbjct: 439 FIDIGTGRNAVLYASEVNWHSPHL------HSKSRRIDQALRSGDQVMVQVIKDPVGHKG 492 Query: 117 ARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEG 176 ARLT I+ RYLV+ PG + G+S+++ E+ER+RLK+++ QGG IIRTAAE Sbjct: 493 ARLTNRISFAGRYLVYFPGGTTAGISRKL-PEAERKRLKEILQRVVPGQGGAIIRTAAEN 551 Query: 177 VGEAELASDAAYLKRVWTKVME-RKKRPQ----TRYQLYGELALAQRVLRDFADAELDRI 231 V E + D L + W + + K + LY E + V+RD + + + Sbjct: 552 VAEELIEEDVNRLHKQWLNIEKTEAKERKSKGAKPVTLYEEPNMLITVIRDLFNEDFSEL 611 Query: 232 RVDSRLTYEALLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELK 287 V+ ++ + ++ PE+ ++ + + +F +++++ +AL RKV L Sbjct: 612 LVEGDKSWRMVRDYMGRMAPELMDRVHKWHPEQHADEDVFAAHRLDDQLAKALCRKVWLP 671 Query: 288 SGGYLIIDQTEAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIII 346 SGG+L+ID TEAMT +D+NTG+FVG NL++T+ N+EA + I RQ+RLR++GG+I++ Sbjct: 672 SGGHLVIDHTEAMTVIDVNTGSFVGSGGNLEETVTENNLEAAEEIVRQMRLRDIGGMIVV 731 Query: 347 DFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECP 406 DFIDM E+++ VL L + L +DR V+ ++LGLV++TRKR + C Sbjct: 732 DFIDMVLEENQDLVLRRLIEYLGRDRTHHKVSEVTSLGLVQITRKRLGAGLLETFSTTCE 791 Query: 407 TCHGRGTVKTVETV 420 C GRG + + V Sbjct: 792 CCDGRGVIVHPDPV 805 >UniRef50_Q0G6Z6 Ribonuclease E and G n=2 Tax=Rhizobiales RepID=Q0G6Z6_9RHIZ Length = 1013 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 132/412 (32%), Positives = 215/412 (52%), Gaps = 2/412 (0%) Query: 78 ECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-A 136 E V + + I E++++ Q L+VQVVK+ G KGA LTT ++L RY V MP A Sbjct: 283 EEVPVRQARPRKNYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTA 342 Query: 137 SHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTK 195 G+S++I ++++R+RL+ VV E G I+RTA +AE+ D YL R+W Sbjct: 343 RGGGISRKITNQADRKRLRDVVKELDVPRGMGIILRTAGANRTKAEVKRDYEYLMRLWES 402 Query: 196 VMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTS 255 V + +Y E +L +R +RD + ++D+I V Y +F +P Sbjct: 403 VRTLTLQSIAPSLVYEEGSLIKRSIRDLFNKDIDQILVSGEAGYREAKDFMRMLMPSQAK 462 Query: 256 KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y PIF +E ++ + L+ V LKSGGY+II+QTEA+ +D+N+G + Sbjct: 463 AVQPYRDATPIFTRQGIEAQLDKMLQPHVTLKSGGYIIINQTEALVAIDVNSGRSTREMS 522 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 +++T + TN+EA + IARQLRLR+L G+I++DFIDM+ + + R V ++ L DR + Sbjct: 523 IENTAYQTNLEAAEEIARQLRLRDLAGLIVVDFIDMDEKRNNRNVEKKMKDCLKNDRARI 582 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V S GL+EM+R+R R S+ CP C G G V+ ++ +R I Sbjct: 583 QVGKISHFGLMEMSRQRIRASVLESTMRPCPVCEGAGMVRATSSLALHAIRHIEDYLQKN 642 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 +V A + E+ H + E+E ++ ++ +P + Sbjct: 643 KGRDLIVKVPTETALFILNEKRHHIDELEQNHDLRIFIEADPSVGHNDLSIE 694 Score = 85.3 bits (210), Expect = 4e-15, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ + P ETRV + G ++E E E ++ + GNIY +V+RV P +QAAF++ Sbjct: 1 MANKMLIDSSHPEETRVVVVRGNRVEEFDFESEHKKQLKGNIYLAKVTRVEPSLQAAFIE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G + FL S+I P + +++ Sbjct: 61 YGGGRHGFLAFSEIHPDYYQIPKADRE 87 >UniRef50_UPI00003842F2 COG1530: Ribonucleases G and E n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003842F2 Length = 836 Score = 473 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 137/410 (33%), Positives = 211/410 (51%), Gaps = 3/410 (0%) Query: 79 CVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-AS 137 + I E++++ Q ++VQVVK+ G KGA LTT ++L RY V MP A Sbjct: 168 ENERRRARLLRNYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTAR 227 Query: 138 HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKV 196 GVS++I S ++R RLK + E + IIRTA + E+ D YL R+W V Sbjct: 228 GGGVSRKIVSATDRRRLKSIANEMDIPDGMAVIIRTAGSERSKTEIKRDYEYLLRMWDSV 287 Query: 197 MERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSK 256 E + +Y E +L +R +RD ++D + VD Y ++ P K Sbjct: 288 RELTLKSSAPALVYEEASLIKRSIRDLYSRDIDEVLVDGDEGYRLAKDYMRMLTPSHAKK 347 Query: 257 LEHYTGR-QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN 315 ++ Y P+F + VE ++ V+LKSGGY++I QTEA+ +D+N+G R+ Sbjct: 348 VQPYKDPVMPMFHRYQVEAQLDAMHSPVVQLKSGGYIVISQTEALVAIDVNSGRATKERH 407 Query: 316 LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKT 375 +++T TN+EA +ARQLRLR+L G+I+IDFIDM + V L++AL DR + Sbjct: 408 IEETALKTNMEAADEVARQLRLRDLAGLIVIDFIDMEENRNNHAVERRLKEALKNDRARI 467 Query: 376 SVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAY 435 V SA GL+E++R+R R S++ + CP C G G V++VE+ I+R I Sbjct: 468 QVGKISAFGLLELSRQRLRPSLQETTFSPCPHCGGTGLVRSVESAAVHILRAIEEEGIRR 527 Query: 436 DSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFD 485 S VY S A+A + ++ +LA +E V + + F Sbjct: 528 RSSEVTVYVSSAIALYILNQKRSALAAIEERYEFDVFLSGDDTLIPPAFR 577 Score = 94.9 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 1/96 (1%) Query: 5 LLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 +L++ T P ETRV ++G L+E+ +E +R + GNIY +V RV P +QAAFV+ G + Sbjct: 1 MLIDATHPEETRVVVVNGTRLEELDVETSTKRQLKGNIYLAKVVRVEPSLQAAFVEYGGN 60 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQ 99 + FL S+I P + +++ +E++R+ Sbjct: 61 RHGFLAFSEIHPDYFQIPVADRQALLAAQRAEVMRE 96 >UniRef50_C4K6Y9 RNase G (Ribonuclease G) n=2 Tax=Enterobacteriaceae RepID=C4K6Y9_HAMD5 Length = 495 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 284/496 (57%), Positives = 379/496 (76%), Gaps = 13/496 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRG--IVGNIYKGRVSRVLPGMQAAFV 58 MT+ELL+NVTP ETRVAYID ILQEI+IERE +VGNIY+GRV+R+LPGMQAAF+ Sbjct: 1 MTSELLINVTPFETRVAYIDDNILQEIYIERENENKTGLVGNIYQGRVTRILPGMQAAFI 60 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 DI L+KAAFLHASDI+ ++++ DI+EL+ GQ++MVQV+KDPLG+KGAR Sbjct: 61 DIQLEKAAFLHASDILSLKPPENEDQRQ-----DIAELIHLGQNVMVQVIKDPLGSKGAR 115 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 LTT ITL SRYLV V +SQR+E+E ERERLK +V+ YCD++ GFI+RTAAEG+ Sbjct: 116 LTTHITLASRYLVLT-MTPEVAISQRLENEQERERLKNIVSSYCDKKNGFIVRTAAEGMD 174 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDF-ADAELDRIRVDSRL 237 E LASDAA+LK +W ++ K + ++ LY EL L +R+LRDF A LDR+R+D + Sbjct: 175 EKALASDAAFLKSLWANIIAGKTQNGSKNVLYTELPLKKRILRDFTVVASLDRVRIDDQQ 234 Query: 238 TYEALLEFTSEYIPEMTSKLEHY----TGRQPIFDLFDVENEIQRALERKVELKSGGYLI 293 TY +L F+ EYIPEM KLEHY Q +F + VENEIQ L +KV LKSGG LI Sbjct: 235 TYNSLKAFSEEYIPEMLPKLEHYPVEKKNNQTLFSFYHVENEIQSLLNKKVPLKSGGCLI 294 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 I+QTEAMTT+DINT FVG++NL++TIF+TNIEAT+ IARQLRLRNLGGIIIIDFIDM N Sbjct: 295 IEQTEAMTTIDINTAGFVGYKNLEETIFDTNIEATRVIARQLRLRNLGGIIIIDFIDMKN 354 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGT 413 E+H++ VL SL++AL++DRVKT+V FS LGL+E+TRKRT E+IE +LC+ C TC GRG Sbjct: 355 EEHKKNVLSSLKKALNQDRVKTTVGEFSPLGLIEITRKRTTENIEKILCDRCQTCEGRGW 414 Query: 414 VKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKV 473 K+ ETVC+EI R+++++HH+ DS + LVY S V++ L +++ +LA+++ +GK++++ Sbjct: 415 FKSPETVCHEIFRKMIQLHHSSDSQQMLVYVSNRVSDFLLHQKAETLAKIQCLLGKKIQI 474 Query: 474 QIEPLYNQEQFDVVMM 489 +I+PLY Q QF ++ + Sbjct: 475 KIDPLYTQNQFHILTI 490 >UniRef50_A7HQG8 Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HQG8_PARL1 Length = 506 Score = 473 bits (1217), Expect = e-132, Method: Composition-based stats. Identities = 188/506 (37%), Positives = 286/506 (56%), Gaps = 24/506 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREAR-----------RGIVGNIYKGRVSRV 49 M+ E+L+NV P ETRVA ++ G E+ +ER ++GNI+ GRV RV Sbjct: 1 MSEEVLINVGPGETRVAIVEDGRPVELFLERTMEDDLKAKTGRAGHSLIGNIFLGRVQRV 60 Query: 50 LPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVK 109 LPGMQAAFV++GL++A FL A + E +E T+ IS V++GQ ++VQ VK Sbjct: 61 LPGMQAAFVEVGLERAGFLGAREARCLCELTGLDEG---TLPPISACVQEGQTILVQAVK 117 Query: 110 DPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCD------ 163 DP+ KGARL+ ++T+P R LV +P S V +S+RIE E ERERL +V E + Sbjct: 118 DPISDKGARLSANVTIPGRLLVLVPNQSGVALSRRIEDEPERERLAALVEEMVERFNPMG 177 Query: 164 ---EQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVL 220 E GFI+RTAA G ++A+DA L W KV E +KR ++ +L + L Sbjct: 178 VTGEPAGFIVRTAAIGATAEDIAADARQLAEEWRKVRETEKRSTAPCVVFHDLDPVSKTL 237 Query: 221 RDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRAL 280 RD A+ R+ +D + + +PEM +++ + G +F L+DV+ EI+ AL Sbjct: 238 RDCVSADTSRVLIDCADAFGEAQRYCRRAMPEMLDRIQLFNGPGQLFSLYDVDGEIEAAL 297 Query: 281 ERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNL 340 E + EL SGG++ ++ TEA+T +D+N+G + L++T N+EA I QLRLR Sbjct: 298 EPRAELPSGGWITVETTEALTAIDVNSGRYTAATGLEETSVKINLEAVHEIVYQLRLRGT 357 Query: 341 GGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 GG+I+IDFI +N+ + ++V+ +L + +KDRV T ++G S GLVEMTRKR RE ++ + Sbjct: 358 GGLIVIDFIHLNDPANIQKVIDALNEGFAKDRVPTQISGMSEFGLVEMTRKRVREPLDKL 417 Query: 401 LCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSL 460 L HGR KT T+ +++R I R A + AS V + L+ + + Sbjct: 418 LTEP-AYPHGRPRRKTCATMANDLLRRIAREAQATPGRPLVARASVEVVDWLERGNPYLV 476 Query: 461 AEVEIFVGKQVKVQIEPLYNQEQFDV 486 + V + + EP + +E+ DV Sbjct: 477 ERLRRKVPADISLIGEPAFPRERIDV 502 >UniRef50_Q0AWI9 RNAse G n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWI9_SYNWW Length = 476 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 161/486 (33%), Positives = 283/486 (58%), Gaps = 15/486 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E++ V P E+RVA ++ G L E+ + VG IYKG++ +LPG+ F+DI Sbjct: 1 MIKEIIAEVYPWESRVAIVEDGRLAEVFWADQGEN--VGKIYKGKIKDILPGLSCVFIDI 58 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL + AFL+A D++ + ++ EL++ GQD+MVQV K+ KGAR+T Sbjct: 59 GLARNAFLYAGDVVRV---------GKKKGLNVYELLKSGQDIMVQVKKEAFSEKGARVT 109 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 D+++P R LV +P + V +S++I + R+ L+ ++ E E GG I+RTA + Sbjct: 110 GDLSIPGRLLVLLPFQNEVSISRKITGDERRKHLRSLLEESKPENGGIIVRTACLEAEDQ 169 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 E+ + L + W ++ +R + + +Y ++ + +R +RD+ D L RI +++R + Sbjct: 170 EIIQELNRLLKTWEEIKQRYQNRKAPSLIYEDMDVLERTMRDYLDGNLSRIVINNRRLKD 229 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +L++ S + ++++ G +F+ +++E +I+R+L RK+ LK+GGYLI D+TEAM Sbjct: 230 KILDYISGKKIFNSLRVDYEEGA--LFEKYNLEKDIKRSLRRKIWLKNGGYLIFDRTEAM 287 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+N+G F G N ++T+F N+EA I RQLRLR+LGGII+IDFIDM + ++ + Sbjct: 288 TVIDVNSGKFTGKDNFEETVFKINMEAAIEIPRQLRLRSLGGIILIDFIDMKEKSNQDEL 347 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 + L+ L KD+ T + G + LG +EMTRK++R + +EC C GRG + ++ + Sbjct: 348 IKVLKTGLEKDKANTRIIGITGLGFLEMTRKKSRYGVVEFFTDECSNCSGRGHIINLQAL 407 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 E R++ + + ++ + + A P + + LK +E + +E GK V + +P Sbjct: 408 ASEAKRKMAHMGYLENN-QIICKAEPRLLKILKDDEKD-IGYIERRSGKSVLLLSDPDLA 465 Query: 481 QEQFDV 486 ++ + Sbjct: 466 PGEYKI 471 >UniRef50_B8DVT8 Ribonuclease G n=7 Tax=Bifidobacterium RepID=B8DVT8_BIFA0 Length = 1028 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 155/425 (36%), Positives = 250/425 (58%), Gaps = 15/425 (3%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 ++V T+++ I+ +L E ++ VGNIY GRV VLP M+AAFVDIG + Sbjct: 480 MVVRERGRHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQAR 539 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 L+A ++ + G+ ++ I + G ++VQV KDP+G KGARLT+ +T Sbjct: 540 NGVLYAGEVNWDATRLEGQPRR------IELAFKSGDPVLVQVTKDPIGHKGARLTSQVT 593 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 L R+LV +P GVS+++ ER RLK +V++ + G IIRTAAEG E +A Sbjct: 594 LAGRFLVLVPSGGMTGVSRKLSD-RERNRLKSIVSKIAPKDMGVIIRTAAEGASEEAIAK 652 Query: 185 DAAYLKRVWTKVMER---KKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 D L W ++ + + L GE +A RV+RD + + +++ V+ Y Sbjct: 653 DLEGLTNQWAEIQRKREEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVYHR 712 Query: 242 LLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 + E+ P++ +KLE + G + +FD + +++++++ +ER+V L SGG ++ID+T Sbjct: 713 IEEYLDHMAPDLHNKLERWDPEEHGGKDVFDRWQIDSQLRKGMERQVYLPSGGSIVIDRT 772 Query: 298 EAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 EAMTT+D+NTG F+G ++L++T+ N+EA++ IARQLRLR++GG+++ID++DM + Sbjct: 773 EAMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPAN 832 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 R VL L + L++DR K V ++LGLV+MTRKR + + ECP C GRG + Sbjct: 833 RDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPECKGRGFIVH 892 Query: 417 VETVC 421 E Sbjct: 893 DEPTI 897 >UniRef50_B0TWF6 Ribonuclease G n=17 Tax=Francisella RepID=B0TWF6_FRAP2 Length = 509 Score = 469 bits (1208), Expect = e-131, Method: Composition-based stats. Identities = 215/495 (43%), Positives = 331/495 (66%), Gaps = 8/495 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E+ +N+ E R+A + IL+EI IER+ ++ IVGNIYKG++ RVLPGMQAAFVDIG Sbjct: 15 NTEIFLNINKYEQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIG 74 Query: 62 LDKAAFLHASDIMPHTECVAGEEQ----KQFTVRDISELVRQGQDLMVQVVKDPLGTKGA 117 L+KA FLH S+++P ++ + DI++ +R+GQ+++VQVVK+ +G KG Sbjct: 75 LEKAGFLHLSEVIPLERDDEESDENFKLNKLNTEDINKWLREGQEVLVQVVKESIGNKGV 134 Query: 118 RLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG--GFIIRTAAE 175 +LT+ +++ SR+LVF+P H+G+S +I E E++RL + + + G+I+RTAAE Sbjct: 135 KLTSHLSVSSRFLVFLPDLDHIGISLKISKEEEKQRLLDSIKKITQSENPRGYILRTAAE 194 Query: 176 GVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDS 235 G EL +D +L +W +++ +Y + +L + + FA+ D+I VD Sbjct: 195 GASYEELENDIKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNPDKIHVDD 254 Query: 236 RLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIID 295 +Y+ + +F +YIP + K+E Y + IF+ +D++ EI +AL++ V LKSGGYL+I+ Sbjct: 255 IDSYKEICQFADKYIPGLRDKIELYQ-KHNIFEEYDIDVEINKALDKTVYLKSGGYLVIE 313 Query: 296 QTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 QTEAM T+DINTG F+G +NL++TIF TN+EAT+ IARQLRLRNLGGIIIIDFIDM +E Sbjct: 314 QTEAMITIDINTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDES 373 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVK 415 H+ +VL +L++ L D+ KTSV+ S LGLVEMTRKR ES+ LC C C+G+G+VK Sbjct: 374 HKNQVLEALKKELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCNGKGSVK 433 Query: 416 TVETVCYEIMREIVRVHHAYDS-DRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ 474 T++T+CY+I REI Y + + FL+ +S + + ++ EES LAE+E+ + K + ++ Sbjct: 434 TLQTICYDIFREIKSESKNYPNYNNFLLMSSKKIIDYIEREESIWLAELELEIDKNIYLK 493 Query: 475 IEPLYNQEQFDVVMM 489 E + Q+D++ + Sbjct: 494 AESNHIYNQYDIIPL 508 >UniRef50_C6JJB6 Ribonuclease G and E n=2 Tax=Fusobacterium RepID=C6JJB6_FUSVA Length = 489 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 182/490 (37%), Positives = 294/490 (60%), Gaps = 6/490 (1%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++++N+ ++R A I+ G + EI IERE I G+IYKG+V+ VLPGM++AFV+IGL Sbjct: 2 NQIVINIDEFQSRAAIIEDGKVVEILIEREEEGRINGSIYKGKVANVLPGMESAFVNIGL 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K FL+ +D+ + + R I +++ G D++VQ++ +P GTKGAR+TT Sbjct: 62 EKNGFLYVNDLRE--FEEKYLDGILNSSRPIEDILNVGDDVVVQILNEPRGTKGARVTTH 119 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 T+P +YLV MP H+ +S++I+ E ERERL+ + E E G IIRTAA G E Sbjct: 120 FTIPGKYLVLMPNNDHIAISKKIKDEKERERLESIFKEIKPENMGVIIRTAAFGKSEFHF 179 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + YL + W + ++ K + LY + + VLRD ++D + VD+ Y + Sbjct: 180 EREIEYLVKKWEDIEKKIKGAKIGEVLYKDNGIITTVLRDIFSNDIDELIVDNEDVYWEV 239 Query: 243 LEFTSEY-IPEMTSKLEHYTG--RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 +++ + + + +K++ Y + IFDL+ + EI +AL V L+ GGYL+I +TEA Sbjct: 240 IDYINAFSEKTLKTKIKLYKDGKEKDIFDLYGINEEIDKALNEVVWLECGGYLVIQKTEA 299 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++D+NTG G NL++T+ NTNIEA + I RQLRLRN GGIIIIDFIDM E+ + + Sbjct: 300 LISIDVNTGKNTGSLNLEETVVNTNIEAAKEIPRQLRLRNFGGIIIIDFIDMRVEEDKIK 359 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 VL +LE+ L KDR+K ++ F+ LGLVEMTRKR+ + + + CP C+G G +K+ + Sbjct: 360 VLEALEKHLQKDRIKNNIVHFTDLGLVEMTRKRSGKPLAYYFQEVCPCCNGTGKIKSKDA 419 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + +E+M+EI D V S + E+ K + E K ++++++ Sbjct: 420 LIHELMKEIKICSEDKDISTIKVRLSKNLIESFKEIYFEIIKEFLKMKKKAIELEVDTN- 478 Query: 480 NQEQFDVVMM 489 N Q++++++ Sbjct: 479 NSCQYEIILV 488 >UniRef50_C4LJU7 Ribonuclease E n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJU7_CORK4 Length = 1258 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 155/461 (33%), Positives = 247/461 (53%), Gaps = 48/461 (10%) Query: 3 AELLV------NVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAA 56 ++V + + T+VA ++ L E + E R +VGNIY GRV VL M+AA Sbjct: 416 RRMIVRDSVRSDGSGKVTQVAIMEDDQLVEHFVTSERTRTLVGNIYLGRVQNVLASMEAA 475 Query: 57 FVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKG 116 FVDIG D+ +++ DI G ++ I + ++ G ++VQV KD +G KG Sbjct: 476 FVDIGTDRNGVIYSGDIDWRHTRHTGRQR------KIEKALKPGDPILVQVTKDSVGHKG 529 Query: 117 ARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEG 176 RLT+ I+L RYLV++P GVS+++ E ER+RLKK V+ ++GG IIRTAAEG Sbjct: 530 PRLTSHISLAGRYLVYVPEGRAHGVSRKL-PEPERKRLKKAVSGILPDEGGAIIRTAAEG 588 Query: 177 VGEAELASDAAYLKRVWTKVMERKKRPQ------------------------------TR 206 V ++A D + VW ++E+ + Sbjct: 589 VDTEDIARDVRRQQNVWDTILEKADELRTLPGSQASSGKGSGKKNSKGGKKGSKPHFDGP 648 Query: 207 YQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYT----G 262 L+ E L +V+RD + + D + VD ++ + + P++ KL Y Sbjct: 649 QTLHEEPNLLVKVVRDLFNEDFDELIVDGGRSWSMVSSYIHRIAPDLEEKLSKYERQDHD 708 Query: 263 RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH-RNLDDTIF 321 Q F + ++ ++++AL+R V L SGG L+I++TEAMT +D+NTG F G +L++T+ Sbjct: 709 GQDAFGHWGIDKQLKQALDRVVFLPSGGTLVIEKTEAMTVIDVNTGRFTGSSGSLEETVT 768 Query: 322 NTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFS 381 N+EA I RQ+RLR++GG+I++DFIDM E+++ VL L +AL+KDR + + + Sbjct: 769 RNNLEAADEIVRQMRLRDIGGMIVVDFIDMVLEENQELVLRRLSEALAKDRTRHQLGEVT 828 Query: 382 ALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +LGLV++TRKR + + C CHGRG + + + Sbjct: 829 SLGLVQITRKRLGKGLVETFSTPCSECHGRGFIVHDDPILL 869 >UniRef50_Q11NU1 Ribonuclease G n=10 Tax=Bacteroidetes RepID=Q11NU1_CYTH3 Length = 535 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 151/505 (29%), Positives = 257/505 (50%), Gaps = 20/505 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ EL ++ + S R+A I L E E R+ VG+IY G V +V+PG+ AAF+D+ Sbjct: 1 MSNELFISSSQSGDRIALIQEKRLVEYQFEDHTRKFNVGDIYLGTVRKVVPGLNAAFIDV 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQ-------------------FTVRDISELVRQGQ 101 G +K AFLH D+ P + + + +S+++ +G Sbjct: 61 GYEKDAFLHYFDLGPKIKSLTKFTKNAITSASTPALLKKFELEAEIKKDGKVSQVLEKGN 120 Query: 102 DLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY 161 ++VQVVK+P+ TKG RL+ +I+L RYLV +P ++ V VS++I + ER+RL ++++ Sbjct: 121 PILVQVVKEPISTKGPRLSCEISLAGRYLVLVPFSNVVSVSKKITDKEERQRLVRLISSI 180 Query: 162 CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 221 E G IIRT A AEL D L + W + K+ + R + GEL +LR Sbjct: 181 RPENFGVIIRTVASNKEVAELDKDLRNLVKTWEDGIAILKKARPRDLIIGELDRTSSILR 240 Query: 222 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 281 D + D I VD++ Y+ L + P+ ++ + G+ +F+ VE +++ Sbjct: 241 DMLNESFDSINVDTKELYDDLRSYIKNIAPDKERLVKLHQGKTKMFESTGVEKQLKTLFG 300 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTG-AFVGHRNLDDTIFNTNIEATQAIARQLRLRNL 340 + V L GGYLII+ TEA+ +D+N+G + ++T +TN+EA + +ARQLRLR++ Sbjct: 301 KSVSLSGGGYLIIEHTEALHVIDVNSGNKSNNETSQEETALHTNLEACREVARQLRLRDM 360 Query: 341 GGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 GGII++DFIDM N D+R+ + ++ + DR K + S GL+++TR+R R + Sbjct: 361 GGIIVVDFIDMKNLDNRKVIYERMKLEMKDDRSKNVILPLSKFGLMQITRERVRPQTNLI 420 Query: 401 LCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSL 460 CPTC+G G + + +I ++ + + + P + Sbjct: 421 TMEVCPTCNGTGKISASIAITDQIEHKLDYIITKQNEKNITLVLHPYIYAYFTTGYISKR 480 Query: 461 AEVEIFVGKQVKVQIEPLYNQEQFD 485 + + VK++ + +F Sbjct: 481 TKWFFKYFRWVKLRTDSSLGLTEFK 505 >UniRef50_Q4JWU2 Ribonuclease E n=2 Tax=Corynebacterium jeikeium RepID=Q4JWU2_CORJK Length = 1013 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 150/435 (34%), Positives = 240/435 (55%), Gaps = 23/435 (5%) Query: 2 TAELLVNVTPS------ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQA 55 ++V + T+V ++ G L E + + ++GN+Y GRV VL M+A Sbjct: 332 ERTMIVRDSERTDRKGMMTQVGVVEDGQLVEHFVADATHQSLIGNVYLGRVQNVLGSMEA 391 Query: 56 AFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTK 115 AFVDIG + A L+A ++ R I + +R G ++VQV+KDP+G K Sbjct: 392 AFVDIGTGRNAVLYAGEMDW------RSPHLHSKSRKIDQALRPGDQILVQVLKDPIGHK 445 Query: 116 GARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAE 175 GARLT I+ RYLV+ P + G+S+++ ER+RLK ++ E GG IIRTAAE Sbjct: 446 GARLTNRISFAGRYLVYFPAGTTAGISRKL-PAGERKRLKDILGEVITGDGGAIIRTAAE 504 Query: 176 GVGEAELASDAAYLKRVWTKVME-----RKKRPQTRYQLYGELALAQRVLRDFADAELDR 230 E ++ D L++ W ++ + R + LY E + +V+RD +A+ Sbjct: 505 NATEEQITEDVQRLEKRWQEIQKLENKERNSKGSKPVTLYEEPNMLIQVVRDVFNADFSE 564 Query: 231 IRVDSRLTYEALLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVEL 286 + +D +++A+ ++ PE+ ++ + Q F D++ ++++A+ RKV L Sbjct: 565 LIIDGDKSWQAVRDYLGRTSPELMDRVHKWNRGKHDGQDAFAPLDLDQQLEKAMARKVWL 624 Query: 287 KSGGYLIIDQTEAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIII 345 SGGYLIID TEAMT +D+NTG+FVG NL+ T+ N+EA + I RQLRLR++GG+I+ Sbjct: 625 PSGGYLIIDHTEAMTVIDVNTGSFVGSGGNLEATVTENNLEAAEEIVRQLRLRDIGGMIV 684 Query: 346 IDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNEC 405 +DFIDM + ++ VL L + L +DR + + ++LGLV++TRKR + C Sbjct: 685 VDFIDMLLQQNQDLVLRRLSEFLGRDRTRHKLGEVTSLGLVQLTRKRLGTGLLETFSTPC 744 Query: 406 PTCHGRGTVKTVETV 420 C GRG + + V Sbjct: 745 EACDGRGFIMHPDPV 759 >UniRef50_C6D805 Ribonuclease, Rne/Rng family n=3 Tax=Bacillales RepID=C6D805_PAESJ Length = 411 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 166/412 (40%), Positives = 256/412 (62%), Gaps = 8/412 (1%) Query: 11 PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHA 70 + A + G L + +E+ G+VGN+YKGRV VLPGMQAAFVDIGL K AFL+ Sbjct: 5 GELLQTAVLMDGRLIDFFMEQSESSGLVGNVYKGRVVNVLPGMQAAFVDIGLGKNAFLYI 64 Query: 71 SDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYL 130 D++ E++ I+ELV+ GQ+L+VQV+K+P+G+KGAR+TT TLP R+L Sbjct: 65 DDLLHPHL-----EKQPEHKPSITELVKPGQELVVQVMKEPMGSKGARVTTHFTLPGRWL 119 Query: 131 VFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLK 190 V+MP A ++GVS++I +ESER R++ + + G I+RTAAEG E L +D L+ Sbjct: 120 VYMPIAGYIGVSKKIMAESERSRIRMIGERLRQGEEGIIMRTAAEGECEESLGADVDQLR 179 Query: 191 RVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYI 250 ++WT V++R + +L+ E L +R +RD ++D + +D Y + E Sbjct: 180 QLWTSVLQRADHAKAPAELHREAGLLRRAVRDTLTDDMDEVWLDDPSRYSEAVSLLKEMT 239 Query: 251 PEMTSKLEHYT---GRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINT 307 P + +L+ + + +FD F V ++I+ A ++ L+SGG L+ D+TEA+T +D+NT Sbjct: 240 PHLAGRLKLFEARKEKVSLFDRFGVTDQIEAAFSSRIRLESGGSLVWDETEALTVIDVNT 299 Query: 308 GAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQA 367 ++G L+DT+F TN+EA IAR LR+R++GGII+IDFIDM NE +R +V+ L Sbjct: 300 AKYIGATGLEDTVFKTNMEAADEIARLLRIRDVGGIIVIDFIDMENESNREKVMARLSDW 359 Query: 368 LSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 KDR K +V G++ LGL+E+TR++ R++ L CP C G G ++ + Sbjct: 360 AKKDRTKCTVFGWTRLGLLELTRRKARDNAARQLTERCPACGGTGKKSSIHS 411 >UniRef50_D2RC82 S1 RNA binding domain protein n=8 Tax=Bifidobacteriaceae RepID=D2RC82_GARVA Length = 1093 Score = 464 bits (1194), Expect = e-129, Method: Composition-based stats. Identities = 151/426 (35%), Positives = 250/426 (58%), Gaps = 15/426 (3%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++V T+++ I+ IL E ++ VGNIY GR+ VLP M+AAFVDIG Sbjct: 519 ERLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIG 578 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + L+A ++ + G+ ++ I + G ++VQV KDP+G KGARLT+ Sbjct: 579 QARNGVLYAGEVNWDMARLEGQPRR------IELAFKSGDPVLVQVTKDPIGHKGARLTS 632 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 +TL R+LV +P GVS+++ ER RL+ +V++ + G IIRTAA+G E Sbjct: 633 QVTLAGRFLVLVPSGGMTGVSRKLSD-RERSRLRAIVSKIAPKDMGVIIRTAADGASEES 691 Query: 182 LASDAAYLKRVWTKV---MERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + D L + W ++ E + L GE +A RV+RD + + ++ V+ Sbjct: 692 IEKDLDSLVKQWERIEAKREEYLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGV 751 Query: 239 YEALLEFTSEYIPEMTSKLEHYT----GRQPIFDLFDVENEIQRALERKVELKSGGYLII 294 + + E+ P++ SK+E++ + +FD + +++++++ +ER+V L +GG ++I Sbjct: 752 RQRIDEYLEMMAPDLRSKVEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVI 811 Query: 295 DQTEAMTTVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 D+TEAMTT+D+NTG F+G ++L++T+ N+EA++ IARQLRLR++GG+++ID++DM Sbjct: 812 DRTEAMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVM 871 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGT 413 +R VL L + L++DR K V ++LGLV+MTRKR + + ECPTC GRG Sbjct: 872 PANRDLVLRRLLECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGF 931 Query: 414 VKTVET 419 + E Sbjct: 932 ILHDEP 937 >UniRef50_Q9K8J2 Ribonuclease G (Cytosolic axial filament protein) n=1 Tax=Bacillus halodurans RepID=Q9K8J2_BACHD Length = 500 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 193/487 (39%), Positives = 294/487 (60%), Gaps = 4/487 (0%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +L N+ E R A ++ G + E+ IER IVGN+Y+GRV VLPGMQA FVDIG Sbjct: 2 KSILFNMATRERRAAVVENGQVIELMIERPVEERIVGNVYRGRVVNVLPGMQACFVDIGR 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K FL+ +++ E++K R+IS+ V++G++L+VQV K+ GTKG RLT Sbjct: 62 EKNGFLYRDELLSFHLSNEEEDEK--KKRNISDFVQEGEELLVQVTKEGFGTKGPRLTGV 119 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 + P RY+V+MP A +VGVS++I E ERER + + G IIRTA + E Sbjct: 120 VAFPGRYVVYMPQAGYVGVSKKIFPEEERERWRSEWEQLLLNDEGLIIRTACKKEVRHEA 179 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + + +++W ++ +R K + LY L +R+LRDF E+ I VD R Y + Sbjct: 180 EQEILFFRQMWEELQKRGKGAKAPSLLYQSSGLIERILRDFPLDEVGEIVVDDREEYHFI 239 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + + Y P M S++ Y G++ +F VE EI++ L R+V LK+GGYL++D EA+T Sbjct: 240 KQLLASY-PNMESRVFLYKGKENVFSHLKVEKEIEKGLRRQVWLKNGGYLMMDHAEALTV 298 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+G F+G ++L DT+ NIEA + IA QLRLR++ GIIIIDFIDM E+ ++ VLH Sbjct: 299 IDVNSGKFIGKQDLQDTVVKVNIEAAKEIAHQLRLRDISGIIIIDFIDMKREEDQQLVLH 358 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +LEQAL DR KT+V G + LGLVEMTRK+ R+S++ L CPTC G G V + E + Sbjct: 359 TLEQALKTDRTKTNVIGMTGLGLVEMTRKKVRQSLQASLSKPCPTCRGTGQVLSDEAQAF 418 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 +I RE+ + D++ ++ +A L G++ L +E +G ++ + +E Sbjct: 419 KIERELW-EYRGSDAEAIVLELPSHIAPVLFGQDGGHLKRLETAIGSRILAVPKKTLKEE 477 Query: 483 QFDVVMM 489 Q+++ + Sbjct: 478 QYEIRYI 484 >UniRef50_Q1IRN1 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRN1_ACIBL Length = 1031 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 171/409 (41%), Positives = 264/409 (64%), Gaps = 2/409 (0%) Query: 80 VAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHV 139 + + IS+L+++GQ+++VQ+ K+P+G KGAR+T+ I LP R+LV+MP +HV Sbjct: 622 PPMKNMQSRNTPLISDLLKEGQEILVQIAKEPIGKKGARITSHIALPGRFLVYMPTVNHV 681 Query: 140 GVSQRIESESERERLKKVVAEYCDEQ-GGFIIRTAAEGVGEAELASDAAYLKRVWTKVME 198 GVS++I S+ ER+RLK++V+ + GGFI+RTAA V E EL +D +LK +W+++ Sbjct: 682 GVSRKIASDEERQRLKRIVSSERENGHGGFIVRTAAANVKEDELRADIRFLKHLWSEIKG 741 Query: 199 RKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLE 258 R + ++ +Y +L L +RVLRD ++ I VD+ YE +L F S + P + +++ Sbjct: 742 RSDKSKSPALIYHDLNLVERVLRDQVTSDFTTIWVDNESEYERVLRFASRFQPSLVRRIK 801 Query: 259 HYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRN-LD 317 YT P+F+ F ++ EI +AL+ KV LKSGGY++I+QTEA+ +DINTG +VG L+ Sbjct: 802 LYTKNTPLFEEFGIQEEINKALKAKVWLKSGGYIVINQTEALVAIDINTGKYVGKTTRLE 861 Query: 318 DTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSV 377 DTI TN++A + I RQ+RLR+LGGII+IDFIDM+ +R++V+ +LE+AL DR + V Sbjct: 862 DTIVKTNVDAIKEIVRQIRLRDLGGIIVIDFIDMDERKNRQKVMAALEEALKSDRAPSKV 921 Query: 378 NGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDS 437 F+ GLV +TRKR ++S+E L C C G VK+V T+C EI E+ ++ D Sbjct: 922 LQFNDFGLVAITRKRVKQSLERTLGTPCSYCEATGFVKSVPTMCSEIYTEVRKLAKHLDG 981 Query: 438 DRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + +P VA+A+K + E E GK V V+ +P +QE FD+ Sbjct: 982 KDVTIRVNPEVAKAIKENNGKLVQEFEELTGKTVIVKSDPAMHQEHFDI 1030 Score = 97.6 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 42/99 (42%), Positives = 60/99 (60%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M EL V+ P ETRVA ++ L EI ERE + G+IYKGRV+RVLPGMQ+AFVD+ Sbjct: 1 MNKELYVSSNPHETRVALVEDDQLAEIFYERENEYTLAGSIYKGRVTRVLPGMQSAFVDV 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQ 99 GL++ AFL+ SD + + + + ++ R+ Sbjct: 61 GLERDAFLYVSDFLDLQDEEDEDFEVAVKTNGTADNTRE 99 >UniRef50_A3ZLB1 Ribonuclease E n=4 Tax=Planctomycetaceae RepID=A3ZLB1_9PLAN Length = 588 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 141/403 (34%), Positives = 230/403 (57%), Gaps = 1/403 (0%) Query: 86 KQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRI 145 + I E+ ++G +++VQV+K+ +G+KG L+T I++P RYLV MP VGVS++I Sbjct: 165 RPRVKPPIQEIFKRGDEVLVQVIKEGIGSKGPTLSTYISIPGRYLVLMPALGRVGVSRKI 224 Query: 146 ESESERERLKKVVAEYCD-EQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQ 204 E + R RL+ + E + GFI+RTA + + EL+ D AYL R+W ++ R K Sbjct: 225 EDDQVRRRLRSTLLELSPPKGLGFIVRTAGQERNKKELSRDMAYLLRLWKVIVRRLKNTT 284 Query: 205 TRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQ 264 +Y E + R +RD +++D I VDS YE EF +P ++L+ Y + Sbjct: 285 GPCDIYEESDMIIRTIRDIFSSDVDSIYVDSEPAYERAKEFLQLVMPRHVNRLKKYESKD 344 Query: 265 PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTN 324 P+F + ++ EI R +R+V L+ GG ++IDQTEA+ +D+N+G F ++ + N Sbjct: 345 PLFHKYHLDEEIARINQREVPLRRGGSIVIDQTEALVAIDVNSGNFRYDGTAEEAAYQLN 404 Query: 325 IEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALG 384 + A + IARQLRLR+LGG+++ DFIDM E HRR V +L ++ +DR +T + S G Sbjct: 405 MMAAKEIARQLRLRDLGGVVVNDFIDMRREKHRRNVERALRDSVKRDRARTKILKTSPFG 464 Query: 385 LVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYA 444 L+EMTR+R R S++ + +CP C GRG VK+ E++ E++R ++ H + + Sbjct: 465 LIEMTRQRIRPSLKRSVFKDCPCCKGRGVVKSAESMAIEVVRMLLAAAHHDGASHVTIRV 524 Query: 445 SPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 + VA L ++ LA +E V++ + E +V Sbjct: 525 NDEVATYLNNKKRRELARIEEDTNIVVQIYGSESFYPEHLEVE 567 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 39/85 (45%), Positives = 55/85 (64%), Gaps = 1/85 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M E+L+NV+ P E R+A ++ GIL+E ++ER ++ VGNIYKG V + P +QAAFVD Sbjct: 1 MKKEMLINVSQPEECRIAIVEDGILEEFYLERTSQDNYVGNIYKGVVVNLEPSIQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEE 84 G+ K FLH SD+ P G + Sbjct: 61 FGVGKNGFLHISDVEPQYFRQGGYD 85 >UniRef50_Q2JW46 Ribonuclease, Rne/Rng family n=4 Tax=Synechococcus RepID=Q2JW46_SYNJA Length = 711 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 148/418 (35%), Positives = 225/418 (53%), Gaps = 16/418 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +++++ A +QE+ + VG++Y G V VLP + AAFV+I Sbjct: 1 MPRQIVIDEQHR--VAAVFAEDQVQELIVASGT--YQVGDVYVGIVENVLPSIDAAFVNI 56 Query: 61 GLD-KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G + F+H SD+ P + + ISELV Q ++VQV+K+P G KG RL Sbjct: 57 GSGERNGFIHVSDLGPL--------RLKRNHASISELVLPQQKVLVQVMKEPTGNKGPRL 108 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T D+ P RYLV P V +S+RIE ER RLK + Q G ++RT AEGV E Sbjct: 109 TGDLAFPGRYLVLRPYGKGVHLSRRIEDREERNRLKSLAILIKPPQMGLLVRTEAEGVSE 168 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + D LK++W + ++ + + L + QRVLRD +++RI DS Sbjct: 169 EAMIEDLEQLKKLWEDIQQQYQAARGPGLLSRDDDFIQRVLRDVYSEDVNRIVTDSPAGA 228 Query: 240 EALLEFTSEYIPEMTS---KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 + + + + ++ + PI + F V I++AL +V+L SGGY++I+ Sbjct: 229 KRVRSYLQGWNKGQMPPGVVVDAHREPTPILEYFRVNAVIRQALRPRVDLPSGGYIVIEP 288 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+T +D+N+G+F +T+ TN EA IARQLRLRN+ G+I++DFIDM++ Sbjct: 289 TEALTVIDVNSGSFTQSATSRETVLWTNCEAATEIARQLRLRNIAGVIVVDFIDMDSRRD 348 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 + VL +ALS D+ + V S LGLVE+TRKR +S+ + + CPTC G G + Sbjct: 349 QLLVLEHFNKALSSDKARPQVVQLSELGLVELTRKRQGQSLYEIFGHSCPTCEGLGIL 406 >UniRef50_Q8DL99 Ribonuclease E n=3 Tax=Chroococcales RepID=Q8DL99_THEEB Length = 668 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 146/419 (34%), Positives = 227/419 (54%), Gaps = 15/419 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++++ A +QE+ + VG+IY G V VLPG+ AAFV++ Sbjct: 1 MPKQIII--AEEHRLAAVFAEDQIQELIVATGTH--QVGDIYLGVVENVLPGIDAAFVNL 56 Query: 61 GL-DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G + F+H SD+ P + + T I+EL+ Q ++VQV+K+P GTKG RL Sbjct: 57 GDASRNGFIHVSDLGPL--------RLKRTAGAITELLAPQQKVLVQVMKEPTGTKGPRL 108 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T +I+LP RYLV MP V +S+RI +E+ER RL+ + G ++RT AEGV E Sbjct: 109 TGNISLPGRYLVLMPYGRGVNLSRRITNEAERHRLRALGILVKPAGMGLLVRTEAEGVSE 168 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + D L+R W + ++ + L + Q+VLRD ++++RI VD+ Sbjct: 169 EAILEDLELLQRQWETIQQQAAASRPPQLLGRDDDFIQKVLRDVYSSDVNRIVVDTPDGV 228 Query: 240 EALLEFTSEYIPEMTS--KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 + + + + ++++ PI D F V I+ AL+ +V+L SGGY+II T Sbjct: 229 KRVKQHLKNWNVNRPVGVLIDYHQEPIPILDYFRVNAAIREALKPRVDLPSGGYIIIQPT 288 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+T +D+N+G+F +T+ TN EA IARQLRLRN+ G+II+DFIDM++ + Sbjct: 289 EALTVIDVNSGSFTSSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQ 348 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 +L +AL D+ + + S LGLVE+TRKR ++I + C C G G + Sbjct: 349 LLLLEHFSKALRADKARPQIAQLSELGLVELTRKRQGQNIYELFGRPCSACGGLGHLVH 407 >UniRef50_C1F7B7 Ribonuclease, Rne/Rng family, insertion n=2 Tax=Bacteria RepID=C1F7B7_ACIC5 Length = 1013 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 172/396 (43%), Positives = 257/396 (64%), Gaps = 2/396 (0%) Query: 93 ISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERE 152 IS+L++QGQ+++VQ+ K+P+ KGAR+T+ I LP R+LVFMP +HVGVS++I S+ ER+ Sbjct: 617 ISDLLKQGQEILVQIAKEPIAKKGARITSHIALPGRFLVFMPTVNHVGVSRKISSDEERQ 676 Query: 153 RLKKVV-AEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYG 211 RLK+++ +E D GGFI+RTAAEG GE EL +D +L +W ++ ER + +Y Sbjct: 677 RLKRILISEKGDATGGFIVRTAAEGAGEDELRADIRFLINLWNEIKERSDSGKAPALIYH 736 Query: 212 ELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFD 271 +L L +R+LRD E I VDS YE ++ F + + P + +++ YT P+F+ F Sbjct: 737 DLNLVERILRDQVSEEFSTIWVDSETDYERIVRFLNRFQPSLVRRVKLYTKEMPLFEQFG 796 Query: 272 VENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH-RNLDDTIFNTNIEATQA 330 +++EI +AL+ KV LKSGG ++I+QTEA+ +DINTG +VG L+DTI TN++A Sbjct: 797 IQDEITKALKSKVWLKSGGSIVINQTEALVAIDINTGKYVGKTARLEDTIVKTNLDAIPE 856 Query: 331 IARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTR 390 I RQ+RLR+LGGII+IDFIDM+ +R +VL +LE+ L DR + V F+ GLV +TR Sbjct: 857 IVRQIRLRDLGGIIVIDFIDMDERKNRHKVLQALEEELKHDRAPSKVLQFNDFGLVAITR 916 Query: 391 KRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE 450 KR ++S+E L C C G G VK+ TV EI E+ ++ ++ L+ +P V + Sbjct: 917 KRVKQSLERTLSIPCNICTGTGMVKSPATVANEIYVEMRKMQRHLENKDVLLRVNPEVVK 976 Query: 451 ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 LK L E+E GK + V+ +P + EQFD+ Sbjct: 977 TLKASGGRWLNELEEMTGKTIIVKSDPTLHPEQFDI 1012 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 41/85 (48%), Positives = 58/85 (68%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E+ ++ TP ETR+A ++ L EI+ ERE + G+IYKGRV+RVLPGMQ+AFVDI Sbjct: 1 MAKEICISSTPHETRLAILEDDQLAEIYYERENEYTLAGSIYKGRVTRVLPGMQSAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQ 85 GL++ AFL+ +D + E E+ Sbjct: 61 GLERDAFLYVTDFLEEQEDSDEYER 85 >UniRef50_A8LRP5 Ribonuclease n=35 Tax=Rhodobacterales RepID=A8LRP5_DINSH Length = 1026 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 125/398 (31%), Positives = 205/398 (51%), Gaps = 2/398 (0%) Query: 91 RDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG-ASHVGVSQRIESES 149 I E+++ Q L+VQVVK+ G KGA LTT ++L RY V MP A G+S++I + Sbjct: 356 YKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAV 415 Query: 150 ERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQ 208 +R++LK++ +E G I+RTA + E+ D YLKR+W ++ + + Sbjct: 416 DRKKLKEIASEIEVPRGAGLIVRTAGAKRTKTEIKRDYDYLKRLWEQIRDLTLKSIAPAP 475 Query: 209 LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFD 268 +Y E L +R +RD ++D + V+ Y +F +P ++ Y P+F Sbjct: 476 IYEEGNLIKRSIRDLYSRDIDEVLVEGEEGYRVAKDFMKMLMPSHAKNVKLYNENLPLFA 535 Query: 269 LFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEAT 328 + VE+ + V+LKSGGYL+I TEA+ +D+N+G ++++T TN+EA Sbjct: 536 RYQVESYLAGMFNPTVQLKSGGYLVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAA 595 Query: 329 QAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEM 388 + +ARQ+RLR+L G+I+IDFIDM + V L+ L DR + V S GL+EM Sbjct: 596 EEVARQVRLRDLAGLIVIDFIDMEERRNNTAVEKRLKDKLKTDRARIQVGRISGFGLLEM 655 Query: 389 TRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAV 448 +R+R R + + C CHG G +++ ++ I+R + LV A V Sbjct: 656 SRQRLRPGMLEITTQPCNHCHGTGLIRSDNSLALSIVRALEEEGMRRRVREVLVKAPVNV 715 Query: 449 AEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 L E+ +A +E G V+++ + F + Sbjct: 716 INYLFNEKREHIALIEGRYGLSVRLEASNELSGADFTI 753 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T ETRV +DG ++E E +R + GNIY +V+RV P +QAAFVD Sbjct: 1 MAKKMLIDATHAEETRVVVVDGTKVEEFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G ++ FL S+I P + +++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQIPVADRE 87 >UniRef50_Q0C4E1 Ribonuclease, Rne/Rng family n=2 Tax=Hyphomonadaceae RepID=Q0C4E1_HYPNA Length = 909 Score = 459 bits (1182), Expect = e-128, Method: Composition-based stats. Identities = 123/406 (30%), Positives = 206/406 (50%), Gaps = 2/406 (0%) Query: 83 EEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGAS-HVGV 141 + I E++R+ Q ++VQVVK+ G KGA LTT ++L RY V MP G+ Sbjct: 171 QRTPISKRYKIQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTPRGGGI 230 Query: 142 SQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERK 200 S++I + ++R+RLK +V+E E G I+RTA + E+ D YL ++W +++E+ Sbjct: 231 SRKIVNSADRKRLKSIVSELDVPEGQGLIVRTAGAKRTKIEIKRDYDYLSKLWEQIVEKT 290 Query: 201 KRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHY 260 + + E L R +RD D E++ + V Y + +P K++ + Sbjct: 291 LSSEAPALINAEGGLVHRAMRDMFDKEIEEVWVQGDEAYREAKDLAKIIMPSQAKKVQQW 350 Query: 261 TGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTI 320 P++ VEN++ V+LKSGGYL+I+QTEA+ +D+N+G RN++ T Sbjct: 351 REEDPLYVAEAVENQLDSIYSPVVQLKSGGYLVINQTEALVAIDVNSGKSTRERNIEQTA 410 Query: 321 FNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGF 380 TN+EA + RQ+RLR+L G+I+IDFIDM + R V L++ L DR + Sbjct: 411 VRTNLEAAEEACRQMRLRDLAGLIVIDFIDMEENKNNRAVEKRLKECLKVDRARVQHGRI 470 Query: 381 SALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRF 440 S GL+E++R+R R+ + + C C+G G +++ + +++R I Sbjct: 471 SQFGLMEISRQRRRQGVLQATSDPCSACNGTGRRRSIPSAALQLIRAIEARAATGGLKGI 530 Query: 441 LVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 V A VA + + +L E+E G + + F + Sbjct: 531 GVKAPTDVALYILNNKREALIEIERLAGFAISIHSSEDMLPGDFQI 576 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ +L++ P ETRVA ++ G + + E + GNIY +V+RV P +QAAFV+ Sbjct: 1 MSRLMLIDAAHPEETRVAIVNNGQVDDFDFEATGNEQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G ++ FL S+I P + +++ Sbjct: 61 YGGNRHGFLAFSEIHPDYYQLPAADRE 87 >UniRef50_C0ZAL2 Putative ribonuclease G n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAL2_BREBN Length = 491 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 166/486 (34%), Positives = 277/486 (56%), Gaps = 13/486 (2%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++ ++ R+A+++ G LQE + VG+IY+GR++ V PG+Q+AFVDIG Sbjct: 2 KQVAISTQGGSIRIAFMENGKLQEWRTQDVRSHASVGDIYQGRIADVKPGIQSAFVDIGT 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + A+L+ D + G E +I+E V GQ ++VQV K+ + K ++T Sbjct: 62 GQNAYLYVDDTV-------GVESGGTAKPNIAERVHVGQKVLVQVSKEAMEMKAPKITMR 114 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I+L RYLV++P + +S++I +++R+RL++V++ ++ G I+RT A E L Sbjct: 115 ISLQGRYLVYLPTEESISLSRKISDDTKRKRLQQVISSTVEQGEGCILRTEAAEAEEQTL 174 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + YL+ W + + ++ +++ + L + LRD +D + V+ T++ + Sbjct: 175 IRELTYLRNRWQDMRRTAEGLRSTGRIFQDAELIEVALRDGLANGMDELLVEGAATHQQV 234 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + + PE+ KL Y G+QP+FD VE E+ RA +R+V LKSGG L+ID+TEAMT Sbjct: 235 KAALAAFAPEVQEKLRWYQGKQPLFDYLGVEAELIRARDRQVPLKSGGSLVIDRTEAMTV 294 Query: 303 VDINTGAFVGHRNL--DDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+NTG+F G + + TN+EA IARQLRLR++GGI+IIDFIDM + ++ RV Sbjct: 295 IDVNTGSFTGAGGQQREQAVTATNLEAVAEIARQLRLRDIGGIVIIDFIDMKEQGNKERV 354 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 + L+Q L+KD V ++V G ++LGLVEMTRKR R S+ L C C GRG V V+ + Sbjct: 355 ISRLKQELAKDPVPSTVLGMTSLGLVEMTRKRVRASLMERLTEPCEACAGRGRVWRVDEL 414 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 + E+ + + D++ LV P + + ++ E + V K++ P + Sbjct: 415 LRRLYVEVTALAKSQDAEAALVDMPPRLLDMIEAWEKAEAVTWPVHVYKRLV----PSMS 470 Query: 481 QEQFDV 486 ++F + Sbjct: 471 PDEFRI 476 >UniRef50_Q31PW1 Ribonuclease, Rne/Rng family n=19 Tax=Cyanobacteria RepID=Q31PW1_SYNE7 Length = 808 Score = 457 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 153/420 (36%), Positives = 233/420 (55%), Gaps = 16/420 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++++ A ++E + + +G+IY G V VLPG+ AAFV+I Sbjct: 55 MPKQIVIAEQHR--IAAVFAEDQIEEFIVAKGTH--QIGDIYLGVVENVLPGIDAAFVNI 110 Query: 61 GL-DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G +K F+H +D+ P + + + I+EL+ Q ++VQV+K+P +KG RL Sbjct: 111 GDSEKNGFIHVTDLGPL--------RLRRSAGAITELLAPQQKVLVQVMKEPTSSKGPRL 162 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T +I+LP RYLV MP +S V +S+RI SESER RL+ + G ++RT A+G+ E Sbjct: 163 TGNISLPGRYLVLMPYSSGVSLSRRIMSESERNRLRALSVLIKPAGMGLLVRTEADGIAE 222 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + D L+R W + ++ L + QRVLRD D ++RI VDS Sbjct: 223 ELIIEDLESLQRQWEQTLQLADSTPAPALLTRDDDFIQRVLRDMYDEGVNRIVVDSHTGL 282 Query: 240 EALLEFTSEYIPEMTS---KLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 + + + S + + +E Y R I D F V I+ AL+ +V+L SGGY+II++ Sbjct: 283 KRVKQHLSAWGAGEIAPGLLIEQYRDRSSILDYFRVNAAIREALKPRVDLPSGGYVIIEK 342 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+T VD+N+G+F +T+ TN EA IARQLRLRN+ G+II+DFIDM++ Sbjct: 343 TEALTVVDVNSGSFTRSATARETVLWTNCEAAAEIARQLRLRNIAGVIIVDFIDMDSRRD 402 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 + +VL +AL D+ + ++ S LGLVE+TRKR ++I + C TC G G V Sbjct: 403 QLQVLEHFTRALRHDKSRPQISQLSELGLVELTRKRQGQNIYELFSTPCTTCGGLGHVAH 462 >UniRef50_Q01YX3 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YX3_SOLUE Length = 913 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 167/421 (39%), Positives = 266/421 (63%), Gaps = 3/421 (0%) Query: 69 HASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSR 128 E + + IS+L+++GQ+++VQ+ K+PLG KGAR+T+ I LP R Sbjct: 494 PEGRPESRPEARPDARSDRPPLPSISDLLKEGQEIIVQIAKEPLGQKGARITSHIALPGR 553 Query: 129 YLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE-QGGFIIRTAAEGVGEAELASDAA 187 +LV+MP H+GVS++I S+ ER RLK+++ GG+I+RTA +G E EL +D Sbjct: 554 FLVYMPTVDHIGVSRKIPSDDERLRLKRILQTNRTGIPGGYIVRTAGDGRTEEELRADMM 613 Query: 188 YLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTS 247 +L +W + ++ +R ++ +L + +R+LRD + + VD+ YE++L F Sbjct: 614 FLYNLWLDMRQKAERRAAPLLIHHDLNVVERILRDQLTSSYKSVWVDNEEVYESVLRFVQ 673 Query: 248 EYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINT 307 + P + ++++ YT PIFD F + E+++AL KV LKSGGY++I+QTEA+ +DINT Sbjct: 674 RFQPALVNRVKMYTRSTPIFDEFGITAELEKALRPKVWLKSGGYIVINQTEALVAIDINT 733 Query: 308 GAFVGHRN-LDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQ 366 G +VG N L+DTI TN +A + I RQ+RLR+LGGII++DFIDM+ +R++V+ +LE+ Sbjct: 734 GKYVGKSNRLEDTIVKTNTDAIKEIVRQIRLRDLGGIIVVDFIDMDERKNRQKVMQALEE 793 Query: 367 ALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMR 426 A+ DR + F+ GLV +TRKR ++S+E LC CP C G G VK+ +TV EI++ Sbjct: 794 AMRADRAPYKILQFNDFGLVAITRKRVKQSLERTLCTPCPYCEGAGYVKSPQTVVGEILQ 853 Query: 427 EIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 E ++ A D ++ +P VA+ LK ++ L EVE +G+ V V+ +PL +QE+FD+ Sbjct: 854 EAHKIARAVD-GNVMLRVAPEVAKLLKSNQNTFLQEVEEILGRPVIVKSDPLLHQEKFDL 912 Query: 487 V 487 Sbjct: 913 A 913 Score = 96.5 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 39/82 (47%), Positives = 55/82 (67%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ EL+++ T ETRVA I+ + EI+ +RE + G+I+KGRV+RVLPGMQ+AFVDI Sbjct: 1 MSKELIISATRHETRVAVIEEDQVVEIYHQRENEYSLAGSIHKGRVTRVLPGMQSAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAG 82 GL + AFL+ SD + Sbjct: 61 GLGRDAFLYVSDFFEDNDEYDK 82 >UniRef50_P72656 Ribonuclease E homolog n=10 Tax=Cyanobacteria RepID=RNE_SYNY3 Length = 674 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 141/418 (33%), Positives = 226/418 (54%), Gaps = 16/418 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M ++++ A +QE+ + + VG+IY G V +LP + AAF++I Sbjct: 1 MPKQIVIAEKHQ--VAAVFWKDQIQELVVSTGS--QQVGDIYLGLVDNILPSIDAAFINI 56 Query: 61 GL-DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G +K F+H SD+ P + + T ISEL+ Q ++VQV+K+P G KG RL Sbjct: 57 GDTEKNGFIHVSDLGPV--------RLRRTAGSISELLSPQQRVLVQVMKEPTGNKGPRL 108 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T +I++P RY+V MP V +S+RI E ER RL+ + G ++RT AE V E Sbjct: 109 TGNISMPGRYMVLMPYGRGVNLSRRINREEERSRLRALAVLIKPPGMGLLVRTEAEDVPE 168 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + D L++ W V ++ L + +RVLRD +E++RI VD+ Sbjct: 169 DAIIEDLENLQKQWELVQQQAMTRSAPMLLDRDDDFIKRVLRDMYSSEVNRIVVDTPAGM 228 Query: 240 EALLEFTSEYIPEMTSK---LEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 + + + + + ++ + I + F V I+ AL+ +V+L SGGY+II+ Sbjct: 229 KRIKQQLMNWDQGRLPEGVLIDCHRESLSILEYFRVNATIREALKPRVDLPSGGYIIIEP 288 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 TEA+T +D+N+G+F N +T+ TN EA IARQL+LRN+GG+IIIDFIDM++ Sbjct: 289 TEALTVIDVNSGSFTHSANSRETVLWTNYEAATEIARQLKLRNIGGVIIIDFIDMDSHKD 348 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 + ++L + L D+ + + + LGLVE+TRKR +++ + CP C G G + Sbjct: 349 QLQLLEHFNRCLETDKARPQIAQLTELGLVELTRKRQGQNLYELFGQPCPECGGLGHL 406 >UniRef50_Q2G5W8 Ribonuclease E n=8 Tax=cellular organisms RepID=Q2G5W8_NOVAD Length = 935 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 129/404 (31%), Positives = 214/404 (52%), Gaps = 2/404 (0%) Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 + + + I +++++ Q L+VQVVK+ G KGA LTT ++L RY V MP Sbjct: 191 KEADELRAKRMALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMP 250 Query: 135 GAS-HVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRV 192 +S G+S++I S S+R+RLK +++E I+RTA + E+ D YL R+ Sbjct: 251 NSSHGGGISRKINSASDRKRLKTIISELELPRSMSCIVRTAGLQRTKPEIKRDFDYLARL 310 Query: 193 WTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE 252 W ++ ER + ++ + L +R +RD + +++ + V+ Y A +F +P Sbjct: 311 WDEIRERTMKSVAPALIHSDSDLIKRAIRDIYNRDIEEVVVEGEHGYRAAKDFMKLLMPS 370 Query: 253 MTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG 312 +++ Y P+F + E+++ + V+LKSGGYL+I+ TEA+ ++DIN+G Sbjct: 371 HAKRVKAYADPVPLFQRYGAEDQLTAMYDPVVQLKSGGYLVINPTEALVSIDINSGRSTK 430 Query: 313 HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 ++ T TN+EA + IARQLRLR++ G+++IDFIDM + R+V +++ AL DR Sbjct: 431 EHGIEQTAVATNLEAAREIARQLRLRDMAGLVVIDFIDMEYGSNIRKVEKAMKDALKNDR 490 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVH 432 + V S GL+EM+R+R R + CP C G G V+T + +R I Sbjct: 491 ARIQVGRISGFGLMEMSRQRLRTGVLEATTRACPHCDGSGLVRTASSAGLSALRLIEDEA 550 Query: 433 HAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIE 476 + +YAS A + + LAE+E G V+V E Sbjct: 551 AKGKGNVVTLYASQEAAVYVLNAKRADLAEIEERYGVTVEVIPE 594 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT +L++ ETRVA + G ++E E + I GNIY +V+RV P +QAAFVD Sbjct: 1 MTTRMLIDARHQEETRVAVLKGNRIEEFDFESADHKQIKGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQ 85 G ++ FL S+I P + E++ Sbjct: 61 FGGNRHGFLAFSEIHPDYYQIPKEDR 86 >UniRef50_A6CTK6 Cytosolic axial filament protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CTK6_9BACI Length = 494 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 151/487 (31%), Positives = 274/487 (56%), Gaps = 6/487 (1%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++VN E R A + GI++ H+ + + I GNIY GRV +V G+ AAF++IG Sbjct: 11 NRIIVNALGREKRWARLRDGIMESFHVYQPEKESIAGNIYIGRVDKVEKGLNAAFINIGE 70 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K FLH D+ + ++K+ +I+ L+ QGQ L+VQV KDP GTKG R+T Sbjct: 71 GKNGFLHIEDLAEYMLL----DEKERKTAEINRLLHQGQKLIVQVKKDPAGTKGPRVTGI 126 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I + LV++P + VS++ SE ++++ ++ + +E+ G + RTAA G E E+ Sbjct: 127 IEMKGTSLVYLPHGRYTAVSKKASSEEQKKKWRRFGSRIKEEEEGIVFRTAALGKAEKEI 186 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 ++ LK+ + ++ + + L+ + + + +L + + I D Sbjct: 187 QNEYLGLKKQYQELYSSSLSKKAPFLLHRQDVMKEDILEEIKKVKQAEIITDDYSWKNEF 246 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 EF + ++ H+ + IF + VE +I++A+++ V L +G ++I+ TEA+T Sbjct: 247 QEFLHNNKASLGGEITHFQSHENIFVHYRVETQIEKAMKKVVWLDNGATIVIEPTEALTV 306 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+NTG F G +L T+ TN A + IARQL++RNL GII+IDFI+M +E H+ V++ Sbjct: 307 IDVNTGKFTGKSDLSQTVLKTNELAAKEIARQLKIRNLSGIILIDFIEMKSEQHQTEVVN 366 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +L++ L +D +T++ GF+ LG++++TRK+T+ + + CP C G G V++ E++ Y Sbjct: 367 ALKEGLKEDGKRTTIVGFTELGILQLTRKKTKPPLLEYISCRCPICSGYGMVESAESMAY 426 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 ++ RE+ ++ A + ++ A+ V + KGE S L E+E + K+++ Q + Sbjct: 427 KLERELYELYPADEDK-VIIEATEDVQKVFKGESSQYLKEMEKSINKKIEFQPVSQSHP- 484 Query: 483 QFDVVMM 489 + + + Sbjct: 485 FYRIKRL 491 >UniRef50_D1I512 Whole genome shotgun sequence of line PN40024, scaffold_57.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1I512_VITVI Length = 934 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 149/550 (27%), Positives = 260/550 (47%), Gaps = 64/550 (11%) Query: 2 TAELLVNVTPS-ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 + +L+N + R+A ++ G L E+ +E ++Y G V++++P M AFV+I Sbjct: 341 STVILINSSICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVYLGVVTKLVPHMGGAFVNI 400 Query: 61 GLD----------------------------------KAAFLH------ASDIMPHTECV 80 G+ FL D Sbjct: 401 GIQFAHDDFEEHEVEDDFDVLIKKDLNGSIVDHDSETINNFLPVELEKGFHDSQLPPLLE 460 Query: 81 AGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVG 140 + ++ +TV + V++G ++VQVVK+ LGTKG LT L SR+ V + + +G Sbjct: 461 MKDSRQAYTVENKWAQVQKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTCCNRIG 520 Query: 141 VSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERK 200 VS++I ER RL+ + + G +RT A G EL D L W ++E Sbjct: 521 VSKKISG-VERTRLRVIAKTLQPKGFGLTVRTVAAGHTLEELQKDLEGLLSTWKNIVEHA 579 Query: 201 KRPQT----------RYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYI 250 K L+ + V++D+ + +++ + VDS TY + + E Sbjct: 580 KSAALAADEGVEGAIPVILHRAMGQTLSVVQDYFNEKVESMVVDSPRTYHEVTNYLQEIA 639 Query: 251 PEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGA- 309 P++ ++E Y R P+FD F++E EI L ++V L +GG L+I+QTEA+ ++D+N G Sbjct: 640 PDLCDRVELYNKRVPLFDEFNIEEEINNILSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 699 Query: 310 -FVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQAL 368 + + I + N+ A + IAR+LRLR++GGII++DFIDM ++ ++R V +++A+ Sbjct: 700 MLGNGTSQEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAV 759 Query: 369 SKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +DR V+ S GL+E+TRKR R S+ ++ C CHG G V+ +ET +I +EI Sbjct: 760 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHGTGRVEALETSFSKIEQEI 819 Query: 429 VRVHHAYDSD----------RFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPL 478 R+ + RF++ + L + LA + + + +++ Sbjct: 820 CRLLAMTEEKADPENPNSWPRFILMVDRFMCNYLTSGKRTRLAILSSSLKVWILLKVARG 879 Query: 479 YNQEQFDVVM 488 + + F+V Sbjct: 880 FTRGAFEVKP 889 >UniRef50_Q5WES2 Ribonuclease G n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WES2_BACSK Length = 497 Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats. Identities = 151/481 (31%), Positives = 248/481 (51%), Gaps = 11/481 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +++ ++ ++ + E E R +VG+++ G+V RVLPGM+AAFVDI Sbjct: 1 MEQSIVITKGINKREAVLLENNEVVEWFFESNDRPQMVGSVFLGKVERVLPGMEAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G K FLH +++ + +KQ + IS+ V G + VQV K+ KG RL+ Sbjct: 61 GTGKNGFLHRDELLAFHLDPSDLTEKQ--TKSISQFVSPGDTIAVQVTKEGTNEKGPRLS 118 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 +++P +Y+V+MP ++V VS+RIESE R L + G I+RTAA Sbjct: 119 GVVSIPGKYVVYMPEGAYVAVSRRIESEHVRASLHTALENKLQHNEGAIVRTAAANAPLE 178 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 E+ D +L+ +W K + +++ +Y L + +L + + ++ + VD Y Sbjct: 179 EVERDLVFLRTLWQKTLRHQEQ--APALIYRAATLVETLLLGYLNEQVTEVVVDDIDDYR 236 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + + K++ Y + F + ++ +A +R++ LK+G +L+ID+TEAM Sbjct: 237 LMKQLVQ---TDDKDKVKLYAHKGSSFQSARISAQLAKAQKRRIWLKNGAFLVIDETEAM 293 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG F G +T+ N A A+Q+RLRN GII+IDFIDM ++ R V Sbjct: 294 TVIDVNTGKFTGKFAQSETVLAVNKLAAVEAAKQIRLRNCSGIIVIDFIDMQSDSDRLAV 353 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 ++E+AL KDRVKTSV GF+ LGL+EMTRK+TR S+ + EC C G G V Sbjct: 354 QQTMERALKKDRVKTSVRGFTKLGLLEMTRKKTRLSMAKTVTVECKACAGTGAVLAGHGH 413 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 + + R I+ ++ +V + + L G +E G + + + Sbjct: 414 AFMLERLILEE----QAEALVVAVTAELRSLLVGVGDLYKERLESLAGVTLFLVTDNSLP 469 Query: 481 Q 481 Q Sbjct: 470 Q 470 >UniRef50_A9ESZ7 Ribonuclease G n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESZ7_SORC5 Length = 907 Score = 453 bits (1166), Expect = e-126, Method: Composition-based stats. Identities = 180/429 (41%), Positives = 266/429 (62%), Gaps = 7/429 (1%) Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G K+A + + E + I E+VR+GQ+++VQV K+P+GTKGAR+T Sbjct: 480 GKGKSA----ARGQQSSRSWQNEPPRISKSTPIREVVREGQEVIVQVSKEPIGTKGARVT 535 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 + I+LP RY+V++P H+G+S+RI SE ER RL+ + QGG I+RT AEG+ + Sbjct: 536 SHISLPGRYVVYLPTVDHIGISKRIGSEKERSRLRDAIEAMKPPQGGLIVRTLAEGLTKK 595 Query: 181 ELASDAAYLKRVWTKVMERKKRP-QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 +L +D YL R+W +V ++++ + LY EL L + RD ++++I +D R Y Sbjct: 596 QLKADVGYLVRLWGEVAKKRESGVRAPAVLYTELDLVLKTARDLFTDDIEKIVIDDREEY 655 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 L F ++PE +E Y G +PIFD + +E+EIQRAL RKV L SGG+LIIDQ EA Sbjct: 656 IRLRRFVEMFMPERADAVELYEGTEPIFDAYGIEDEIQRALSRKVPLPSGGHLIIDQAEA 715 Query: 300 MTTVDINTGAFVGHR--NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 +T +D+NTG FVG +L++TI TN+EA + IA QLR RN+GG+II+D IDM +R Sbjct: 716 LTAIDVNTGRFVGKGSKDLEETILTTNLEAVEEIAYQLRFRNIGGLIILDLIDMERAQNR 775 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 +V LE+ LS+D+ KT++N S LGL+EMTRKRTRES+ + C C G G +++ Sbjct: 776 EKVRRRLEELLSRDKAKTTLNRISDLGLIEMTRKRTRESLGRTILEPCFYCDGTGQLQSK 835 Query: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 +TV YEI+R+I R +V A PAV + LK +E ++ E E +++ + Sbjct: 836 QTVAYEILRQIRRERMNLPGYSVVVNAHPAVIDLLKNDERIAVQEAERLFQRRIDLVPRK 895 Query: 478 LYNQEQFDV 486 Y+ EQFD+ Sbjct: 896 EYHLEQFDL 904 Score = 91.1 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 46/90 (51%), Positives = 64/90 (71%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 L++NV ETRVA I+ GI+ E+H+ERE+ +G +GNIY G+VSRVLPGMQAAF+D+G Sbjct: 3 KNLLVINVDIRETRVALIENGIIAELHLERESSKGTLGNIYLGKVSRVLPGMQAAFIDVG 62 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVR 91 L++AAFLH D++ + A + TV Sbjct: 63 LERAAFLHVEDLIRPDDFEAYLAGHRRTVE 92 >UniRef50_B0K422 Ribonuclease, Rne/Rng family n=12 Tax=Thermoanaerobacterales RepID=B0K422_THEPX Length = 474 Score = 453 bits (1165), Expect = e-126, Method: Composition-based stats. Identities = 170/486 (34%), Positives = 279/486 (57%), Gaps = 14/486 (2%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 L++++ + +++A ++ G L+E H E+ + I+GNIYKG++ VL GMQAAFVDIG+ Sbjct: 2 KRLILDIDENLSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDIGI 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K AFL D++ E + + I+++++ GQ +MVQV K+ +G K R+T + Sbjct: 62 GKNAFLFFDDVLFQQENLP---------KSITQVLKPGQPIMVQVSKEAVGMKNPRVTAN 112 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I+LP +Y+V MP ++G+S RIE E ER+RL+++V + E G I+RTAA E ++ Sbjct: 113 ISLPGKYVVLMPNVDYIGISHRIEEEVERKRLQEIVKKLKPEGIGIIVRTAALEATEQQI 172 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D L R++ K+ + + +Y E A + LRD E+D I V+ + YE + Sbjct: 173 REDLEELIRLYEKIQKDFQNAPLPSLIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEYENI 232 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + E + + ++ + ++ + LE+KV LKSGG++IIDQTEA+T Sbjct: 233 KRYLKNVGKEN---ISVTYEEGDLLGIYGADFQVDKLLEKKVWLKSGGFVIIDQTEALTV 289 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+NTG +VG +L++TI+ TN+EA + IA QL+LR++GGIIIIDFIDM NE+ +R +L Sbjct: 290 IDVNTGKYVGKSSLEETIYKTNLEAAEEIALQLKLRDIGGIIIIDFIDMKNENFKRDLLE 349 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 ++ L KDR K +V G++ LGLVEMTRKR R + L +CP C G G V + E + Sbjct: 350 FFKRELQKDRTKCTVLGYTQLGLVEMTRKRVRSQVGSYLKEKCPICEGEGMVYSTEYIYR 409 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 + I RV ++ + + + V + E + + +++ ++ Sbjct: 410 RLRNNIERVLRHVNARKIYIKGNDKVVK--IASEKGIIKFYKEKFNVDLELVVDNNKKYG 467 Query: 483 QFDVVM 488 F++ Sbjct: 468 HFEIEF 473 >UniRef50_C7LYB0 Ribonuclease, Rne/Rng family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYB0_ACIFD Length = 457 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 166/425 (39%), Positives = 246/425 (57%), Gaps = 10/425 (2%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIERE--ARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 ++ V+V T VA ++G L + + R +VGNIY GRV VLPGM+AAF+DIG Sbjct: 38 QMAVHVHGDVTHVAILEGRSLIQHAVSRASDTETSVVGNIYLGRVVNVLPGMEAAFIDIG 97 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 K A L+ D+ E + G I +L+R Q ++ Q VK+P+ KGARLT Sbjct: 98 TAKNAVLYRGDVRYEREDLEGLGDG----ARIEQLLRPKQVIVCQAVKNPIAHKGARLTQ 153 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 +++LP R+ V +PG VG+S+R+ ER RL+ +V + E G I+RTAAEG AE Sbjct: 154 EVSLPGRFAVLVPGQRSVGISKRLPD-QERRRLRGLVEDLVPEGFGVILRTAAEGATRAE 212 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L D L +W ++ E + LY E A RV+R+ E + +D R YE Sbjct: 213 LERDITQLVGMWQRIDELARTEHAPALLYQEPPAAVRVIREEFSQEFRSVAIDDRALYED 272 Query: 242 LLEFTSEYIPEMTSKLEHYTGR---QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + + PE+ ++E+Y PIF + V++++ +ALER V L SGG L+ID+ E Sbjct: 273 VARYVQTISPELADRVEYYDAEAEGVPIFQRYHVQHQLAKALERTVWLPSGGSLVIDRAE 332 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +D+NT VG +L++TI N+EA + IARQLRLR++GGII+ID +DM + +R Sbjct: 333 ALTVIDVNTARNVGAVSLEETIHRNNLEAVEEIARQLRLRDIGGIIVIDVVDMVDPQNRD 392 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 V+ + AL++D+ +T V S LGL++MTR+R E + L + CPTCHG+G V + Sbjct: 393 DVMRAFRAALARDKTRTHVYDMSPLGLIQMTRQRISEGLVESLSSTCPTCHGQGYVLDED 452 Query: 419 TVCYE 423 V Sbjct: 453 VVASR 457 >UniRef50_C5CEM0 Ribonuclease, Rne/Rng family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEM0_KOSOT Length = 481 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 149/469 (31%), Positives = 253/469 (53%), Gaps = 23/469 (4%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 ++ + E R+A +D G +QE+ E +GNIY G++ V+P ++AAFV+IG+ K Sbjct: 12 IVFSSLEDEVRIAILDEGKIQEVFFEEMDNESYMGNIYLGKIENVVPSLEAAFVNIGIGK 71 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 FL D ++ + +G+ ++VQV KDP+G+KG +LT I+ Sbjct: 72 NGFLRFKDT------------------RNNQKLEKGKKVLVQVKKDPIGSKGPQLTLKIS 113 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELAS 184 +P R LV+MP + HVG+S++I ++ERERL + + G I RTAA GVGE L Sbjct: 114 IPGRCLVYMPFSKHVGISKKITDQAERERLISIAKGIIENDEGIIFRTAANGVGEDTLRE 173 Query: 185 DAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLE 244 + L+ +W K+ E+ +R + LY E +L + +LR+ ++ I VDS + ++ Sbjct: 174 ELENLRTIWKKINEKFRRARKPQILYEEPSLVEYILRERLTEDVKEIVVDSEDLWHDVVA 233 Query: 245 FTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVD 304 S++ + + + F + +++ R V L +GG + ID+TEAMT +D Sbjct: 234 GISKFKSGFKPIVRYV--EEDAFLHEGIYEKMKVLYTRVVPLPNGGNIFIDKTEAMTVID 291 Query: 305 INTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSL 364 +N+ + ++ + NTN+EA IARQLRLRN+GGII+IDFIDM +E R++V+ L Sbjct: 292 VNSASNTHGSDVSEMSLNTNLEAAVEIARQLRLRNIGGIIVIDFIDMKSEADRKKVISLL 351 Query: 365 EQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEI 424 + L KD+ + + GF+ LGL+EMTRKR+ +I + + CP C G G +++ + + Sbjct: 352 SEELKKDKAHSLILGFTRLGLLEMTRKRSTATINSRIYSTCPICRGTGQIESPKITYQRL 411 Query: 425 MREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKV 473 + ++ R+ V ++ L ++ +++KV Sbjct: 412 VSDLQRLFKDKKIKSATVQVYQNLSGILT---PEVQKQLSKQFKREIKV 457 >UniRef50_Q2S597 Ribonuclease, Rne/Rng family subfamily n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S597_SALRD Length = 596 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 155/485 (31%), Positives = 263/485 (54%), Gaps = 18/485 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ E++ NV +TR+A ++ G L E++IE + +GN+Y G++ +V+P +QAAFVDI Sbjct: 1 MSKEIVFNVGNEQTRIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAAFVDI 60 Query: 61 GLDKAAFLHASDI--------------MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQ 106 G ++ AFLH SD+ P E + + K+ + S+L+ +GQ ++VQ Sbjct: 61 GQEQDAFLHFSDLSDNLPYLLDFLGLEAPTVEAIDVPKGKKDWDKRPSDLLNRGQTILVQ 120 Query: 107 VVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQG 166 V K+P+ KG+R++TDI+L R+LV +P ++V VS++I + ER RL+ + + + Sbjct: 121 VTKEPISNKGSRISTDISLAGRFLVLVPLQNYVAVSRKITDDEERRRLESLASSLVPDGV 180 Query: 167 GFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKK-RPQTRYQLYGELALAQRVLRDFAD 225 G I+RT A+ L D L W +V +R K +P ++ ++ +A ++RD Sbjct: 181 GVIVRTVAQDRDAKSLDKDMKLLMERWRRVEKRLKDKPSPPELVHEDVDMASSIVRDEFS 240 Query: 226 AELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVE 285 E DRI VD Y ++ + P++ ++E + G QP+F+ +++ RA + +VE Sbjct: 241 EEYDRILVDHEGLYSSIQSYVRAVGPQLVDRVELHEGDQPVFESVGIQHGADRAFKDRVE 300 Query: 286 LKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIII 345 L SGGYL I++TEAM VD+N+G ++ + N N+EA + IARQ+RLR+LGGII+ Sbjct: 301 LPSGGYLFIEKTEAMHVVDVNSGRSGKGKSQAENSLNVNLEAARVIARQIRLRDLGGIIV 360 Query: 346 IDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNEC 405 +DFID+ +ED +++V +++ +DR T V S GLVE+TR+R R SI + Sbjct: 361 VDFIDLRDEDDKKKVYDEVKKGFEEDRAVTKVLPMSDFGLVEITRQRLRPSITTTFSSAN 420 Query: 406 PTCHGRGTVKTVETVCYEIMREIVRV---HHAYDSDRFLVYASPAVAEALKGEESHSLAE 462 T G + R+I + + + + A + + Sbjct: 421 GTPSDDGDDGADPEELRQAERKIQSLEKEVEKREREVKRLKAEDDTPDEEVTALRQKIQA 480 Query: 463 VEIFV 467 +E + Sbjct: 481 LEDKL 485 >UniRef50_Q89AH3 Putative truncated ribonuclease E n=22 Tax=Bacteria RepID=RNE_BUCBP Length = 410 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 140/402 (34%), Positives = 223/402 (55%), Gaps = 8/402 (1%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L+N + R+A IDG L ++++E ++ NIYKG++ R+ P ++AAFVD G Sbjct: 2 RRMLINAIEIKKLRIALIDGQQLYDLNVENIDKKQRKSNIYKGKIVRIEPSLEAAFVDYG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 K FL +I + + +++I +++GQ+ +VQ+ K+ GTKGA LTT Sbjct: 62 EKKNGFLPLKEISRNYFPNNCSNYRHLHIKNI---LKEGQECIVQIDKEERGTKGALLTT 118 Query: 122 DITLPSRYLVFMPGASHV-GVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGE 179 I+L YLV MP H+ G+S++IE +R LKK+++ E G IIRT+ G Sbjct: 119 FISLAGNYLVLMPNCPHLEGISRKIEGI-DRFHLKKIISMLMVPENMGIIIRTSGVGRSI 177 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 L D + + W + + + ++ E + R LRD+ ++ I VD+ Sbjct: 178 ETLQLDLNFRVKNWYTIKKSAEINTAPCLIHKESNIVIRTLRDYLKKDIQEIIVDNPEIL 237 Query: 240 EALLEFT-SEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 E ++ + K++ YTG P+F + +E++I L R V+L SGG +IID TE Sbjct: 238 ELARDYMFNMNCSYFEKKIKLYTGSDPLFSYYKIESQINALLRRIVKLPSGGSIIIDYTE 297 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +DIN+ N+++T FNTN EA + IARQLRLR+LGG+I+IDFIDM+ H++ Sbjct: 298 ALTAIDINSSQSTKGVNIEETAFNTNYEAVREIARQLRLRDLGGLIVIDFIDMSVLKHQK 357 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 + L Q L KDR + V S GL+EM+R+ ++ + Sbjct: 358 MIELHLHQVLQKDRARVQVGSISQFGLLEMSRQCLGSPLKKI 399 >UniRef50_Q0FAK9 Ribonuclease, Rne/Rng family protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FAK9_9RHOB Length = 870 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 120/414 (28%), Positives = 208/414 (50%), Gaps = 2/414 (0%) Query: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 E + + I E+++ Q L++QVVK+ G KGA LTT ++L RY V MP Sbjct: 217 DVEEEVRPRKPRPRRYKIQEVIKVRQILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPN 276 Query: 136 -ASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 A G+S++I + +R+++K++ +E + G I+RTA ++ D YL R W Sbjct: 277 TARGGGISRKITNVQDRKKIKEITSELDVPKGAGLIVRTAGAKRNRDDILRDYEYLMRQW 336 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 T++ + Q+Y E + +R +RD + ++D I V+ +EA + + +P Sbjct: 337 TQIRDITLESIAPTQIYAEGDIIKRSIRDLYNNDIDEIIVEGERGFEAAKAYMTMLMPSH 396 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 +++ Y + P++ + VEN + V+LKSGGY++I TEA+ VD+N+G Sbjct: 397 VKRVKQYKNKMPLYARYQVENYLGGMFNPTVQLKSGGYIVIGVTEALVAVDVNSGKATKE 456 Query: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 +++ T TN+EA +ARQLRLR+L G+I+IDFIDM + V ++ L DR Sbjct: 457 SSIEKTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMEERRNNIAVEKRMKDKLKSDRA 516 Query: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 + V S GL+EM+R+R R + ECP C G G V++ ++ I+REI Sbjct: 517 RIQVGRISGFGLMEMSRQRLRPGMLEATTKECPHCLGTGLVRSDDSQALSILREIEEEAI 576 Query: 434 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 + ++ L + ++A +E + ++ +++ Sbjct: 577 RKRTKEIQATVPVGISNYLLNHKRENIALIESQYAISIIIEASASMIGTDYELE 630 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 1 MTAELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++L++ T ETRV ++G + E E +R + GNIY +V+RV P +QAAFVD Sbjct: 1 MPKKMLIDATHAEETRVVVVEGNKVDEFDFESLNKRQLSGNIYLAKVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQK 86 G ++ FL ++I P + +++ Sbjct: 61 YGGNRHGFLSFAEIHPDYYQIPVADRE 87 >UniRef50_B6YQX9 Ribonuclease G n=23 Tax=Bacteroidales RepID=B6YQX9_AZOPC Length = 518 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 150/507 (29%), Positives = 266/507 (52%), Gaps = 22/507 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +EL+++V P +A ++ L E E VGNIY GRV +++PG+ AAFVDI Sbjct: 1 MISELVIDVQPQIISIAVLEDKNLVEFRKEVRDLSFSVGNIYLGRVKKMMPGLNAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDIS-------------------ELVRQGQ 101 G +K AFLH D+ + + +K F+ + I ++++QG Sbjct: 61 GGEKGAFLHYRDLGGNINSLNTFLKKVFSEKRIPPIGKFLCSSAEVAKDISITDILKQGD 120 Query: 102 DLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEY 161 +++VQ+VK+P+ TKG RLT+++++ R L+ +P V +S +I+S+ ER RLK++V Sbjct: 121 NVLVQIVKEPIATKGPRLTSELSIVGRCLIVIPFGDRVSISLKIQSDKERIRLKQLVCSI 180 Query: 162 CDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLR 221 + I+RT+A+G +EL + L + W + + ++ +Y E +LR Sbjct: 181 KPKNFSVIVRTSAKGKQASELDKELKILVKRWNDNIVKLINSKSPSLIYEETGRVLALLR 240 Query: 222 DFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALE 281 D D+ + I ++ + + ++ S P+ ++ ++ Y G PIFD F + +++ Sbjct: 241 DNFDSSFEHIYINDENMFNEVRDYLSLIDPQKSNIVKLYKGEFPIFDNFVITKQLKSKFG 300 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTGAF---VGHRNLDDTIFNTNIEATQAIARQLRLR 338 + + LK+G YL+I+ TEAM +D+N+G + N +D I + N+ A + IA+QLRLR Sbjct: 301 KIITLKNGAYLVIEHTEAMYVIDVNSGNRLALTANTNQEDVIVDVNMSAAEEIAKQLRLR 360 Query: 339 NLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIE 398 ++GGII+IDFIDM + +R+++ S+ ++KDR K V S +GL+E+TRKR R +++ Sbjct: 361 DMGGIIVIDFIDMYEQVNRQKLYDSMCNFMAKDRAKHHVFPLSKVGLMEITRKRIRPALD 420 Query: 399 HVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESH 458 C G+GT+K + +I V F ++ P VA +K Sbjct: 421 FNAMETCSVPLGKGTIKPSIFFTDMLDEKIKIVVKKMGVKEFSLHIHPYVAAFVKKGFFS 480 Query: 459 SLAEVEIFVGKQVKVQIEPLYNQEQFD 485 + +I +++ + + Sbjct: 481 LNMKWKIKYSVGIRIIPDQSLEILGYK 507 >UniRef50_C3W9J7 Ribonuclease G and E n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3W9J7_FUSMR Length = 488 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 180/489 (36%), Positives = 294/489 (60%), Gaps = 5/489 (1%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++++N+ ++R A I+ + E+ IERE R I NIYKG+V+ VLPGM++AFV+IGL Sbjct: 2 NQIVINIDEFQSRAAIIEDEKVVEVLIEREEERRINANIYKGKVANVLPGMESAFVNIGL 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K AFL+ +D+ + + R I +++ G +++VQV+ +P GTKGAR+TT Sbjct: 62 EKNAFLYVNDLRE--FEEKYLDGICNSERPIEDILTVGDEVVVQVLSEPRGTKGARVTTH 119 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 T+P +YLV MP +H+ +S++I+ E ER RL+++V + E G IIRTAA+G Sbjct: 120 YTIPGKYLVLMPNNNHIAISKKIKEEEERNRLEEIVRDLKPENMGVIIRTAAQGKSIFHF 179 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + YL + W + ++ + LY + + VLRD E+D + +D+ Y + Sbjct: 180 EREMEYLVKKWEDIEKKTSTAKIGEVLYKDNGIVATVLRDIFSNEIDELVIDNEEVYWEV 239 Query: 243 LEFTSEY-IPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +++ + + + +K++ Y + IF+ + +E EI+ AL+ +V L+ GGYL+I +TEA+ Sbjct: 240 IDYINAFSEKTLKTKIKLYNDDEIGIFERYGIEKEIENALKEEVRLECGGYLVIQKTEAL 299 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 ++D+NTG G NL+ T+ NTN+EA + I RQLRLRNLGGIIIIDFIDM E+ + +V Sbjct: 300 ISIDVNTGKNTGSYNLEQTVLNTNLEAAREIPRQLRLRNLGGIIIIDFIDMRLEEDKLKV 359 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L +LEQ LSKDR+K ++ F+ LGL+EMTRKRT + + + CP C G G +K+ ++V Sbjct: 360 LEALEQNLSKDRIKNNIVHFTDLGLIEMTRKRTGKPLYNYFQERCPMCEGTGKIKSKDSV 419 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 +E+M EI D + V S + A K + + K++ ++ N Sbjct: 420 IHEMMTEIKECAKDEDINIIKVILSKKLKIAFKELYFDFVEDFVKNRKKKIILEEN-SQN 478 Query: 481 QEQFDVVMM 489 +++++M Sbjct: 479 DYSYEIILM 487 >UniRef50_A0L8J1 Ribonuclease E n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J1_MAGSM Length = 984 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 132/419 (31%), Positives = 223/419 (53%), Gaps = 2/419 (0%) Query: 73 IMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVF 132 + I +++++GQ L++QVVK+ GTKGA LTT+I+L RY V Sbjct: 151 ARRPRNNERANRGNRRRHIPIQDILKKGQLLLLQVVKEARGTKGASLTTNISLAGRYTVL 210 Query: 133 MP-GASHVGVSQRIESESERERLKKVVAEY-CDEQGGFIIRTAAEGVGEAELASDAAYLK 190 +P + G+S++I R+ LK ++ E ++ IIRTA + E+A D +YL Sbjct: 211 LPENSGGGGISRKIMDNQARKALKTMLTEMEIPQEVSLIIRTAGMERTKREIARDMSYLT 270 Query: 191 RVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYI 250 R+W + E+ ++ T ++ E L R +RD +++ I +D Y +F + Sbjct: 271 RLWKTIQEKVEQHNTPTLIHEEGDLIIRTIRDLYSTDMEEILIDGGEAYRRGKDFMRLLM 330 Query: 251 PEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAF 310 P ++ Y R P+F + VE++I+ ER + LK+GGYL+I+ TEA+ ++DIN+G Sbjct: 331 PRYVKAVQPYKDRIPLFSRYQVEHQIESMHERTISLKAGGYLVIEPTEALVSIDINSGRS 390 Query: 311 VGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSK 370 +N+++T F TN++A IARQLRLR+LGG+I+IDFIDM + H V L++AL Sbjct: 391 TKEKNVENTAFKTNMQAVDEIARQLRLRDLGGLIVIDFIDMEEKKHNLEVEKRLKEALKG 450 Query: 371 DRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVR 430 DR K + S GL+E++R+R + + CP C G GT+++VE+ + R I Sbjct: 451 DRAKIQLGKISQFGLLELSRQRMKPAFNESNREVCPRCTGLGTIRSVESTAIRLFRCIEE 510 Query: 431 VHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM 489 + + + +A VA L + + ++E ++ ++I+P F + Sbjct: 511 DISSGRFSKLIYFAPADVANYLHNRKRFQMVQLEQENNLELLIEIDPELQTPHFRKERI 569 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 MT +LV+ T P E RVA + L ++ IE + I GNIY GRV+RV P +QAAFVD Sbjct: 1 MTKRMLVDATHPEEVRVAIVQDQRLIDLDIETCTKAQIKGNIYLGRVTRVEPSLQAAFVD 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEEQKQF 88 + FL +DI P + Sbjct: 61 FNDGRQGFLSVNDINPKYYPPEFRPEPDP 89 >UniRef50_C9LKU5 Cytoplasmic axial filament protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKU5_9FIRM Length = 472 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 161/486 (33%), Positives = 260/486 (53%), Gaps = 20/486 (4%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++++ + ET +A L ++ IE++ IVG IYKG V ++P + FVDIG+ Sbjct: 2 NRVILSDSTDETILAVTRQHKLVDLEIEQQINTEIVGCIYKGIVKNIVPAVDGIFVDIGI 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K AFL D++ +G ++ QV+K KGA +T Sbjct: 62 GKNAFLRRKDLLNEKRFP-----------------TEGSPILAQVIKSDTDMKGALITEK 104 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I++ +Y V + G ++GVS++I SES R+RLK++ E C E G IIRTAAE E Sbjct: 105 ISMLGKYAVTLSGTGYIGVSKKIRSESVRKRLKEIGKEICAEHMGLIIRTAAENADMDEF 164 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D LK W + +R + ++ LY E + + LRD+ + + + D+R YE + Sbjct: 165 RKDITRLKENWDIIQKRFRMEKSPTLLYRESDIIVKALRDYVNKGTEILITDNRKIYERI 224 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + K+ Y R P+ ++E +I +R+VEL SGG LII+ TEA+T Sbjct: 225 CKLNESEHTIEPDKISLYKERMPLLKKEEIEEQIHLLFKRRVELPSGGSLIIEDTEALTV 284 Query: 303 VDINTGAFVGHRNL-DDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+N+GAF ++ ++ N EA IARQ+RLR +GG+I+IDFIDM E+ ++ ++ Sbjct: 285 IDVNSGAFNRQGIPHEEAVYLINQEAAIEIARQVRLRGIGGMILIDFIDMQKENQKKDIV 344 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 L++ L KD+VK+ V G ++LGLVEMTRKRT S+ C+ CP C+G G + +V++V Sbjct: 345 GILQRELKKDKVKSIVCGMTSLGLVEMTRKRTTHSLIKNYCDICPICNGTGHILSVQSVI 404 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQ 481 +I RE+ V + ++ P VA LK E+ + +++ ++ N+ Sbjct: 405 QQIHRELETVKRYGGARDLVIRCHPEVAARLKEEQKAG--YFMKYFNREIMIEENDHLNR 462 Query: 482 EQFDVV 487 E + V+ Sbjct: 463 EVYSVL 468 >UniRef50_A7H8A5 Ribonuclease, Rne/Rng family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H8A5_ANADF Length = 740 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 179/414 (43%), Positives = 267/414 (64%) Query: 74 MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFM 133 E++ ++I +L+++GQ+++VQV KDP+GTKGAR+T+ I+LP R+LVFM Sbjct: 281 ERGNRNGHEREKRSKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFM 340 Query: 134 PGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVW 193 P H+G+S+RIE +SER RL+++V + GFI+RT AE V +L +D +L +VW Sbjct: 341 PTVDHIGISRRIEKDSERRRLREIVDRMRPDGTGFIVRTVAENVEAGKLEADIRFLIQVW 400 Query: 194 TKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEM 253 +++ K + L+G+L L R RD A++ ++ +D R YE +L F E P + Sbjct: 401 NEIIRTKDKVSAPALLHGDLDLILRATRDLFTADVGKLVIDDRDEYERILRFVHEQAPHL 460 Query: 254 TSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGH 313 S++E+Y G +PIFD + +E E++RA +RKV LKSGGY+I+DQ EA+T +D+N+G +VG Sbjct: 461 ESQIEYYRGEEPIFDAYGIEQELKRASQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGK 520 Query: 314 RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRV 373 +NL++TI N+EA + I QLRLRN+GGIIIIDFIDM+ +R +V +L+ AL +D+ Sbjct: 521 KNLEETITKINVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKA 580 Query: 374 KTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHH 433 KT+V S LGLVEMTRKR RES+ V+ C C G+G +K+ T+ YEI REI R Sbjct: 581 KTNVLKISELGLVEMTRKRVRESVTRVMNEPCSYCEGKGHLKSKITITYEIFREIRREAV 640 Query: 434 AYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 + +V P VA L+G E L + K ++V+ + Y+QEQFD+ Sbjct: 641 HFPEPVLVVNCHPEVARILQGSEREELRYLMDRFNKTIQVKPQSGYHQEQFDIY 694 Score = 94.1 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 46/87 (52%), Positives = 59/87 (67%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 L++N +ETRVA ++ + E ++ER+ +GIVGNIYKGRV RVLPGMQAAFVDIGLDK Sbjct: 7 LVINAAGAETRVALVENNTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLDK 66 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVR 91 AAFL+ D+ E E + R Sbjct: 67 AAFLYVGDVYGDPEFSEEFELTEGEHR 93 >UniRef50_A5FJP9 Ribonuclease, Rne/Rng family n=29 Tax=Bacteroidetes RepID=A5FJP9_FLAJ1 Length = 543 Score = 441 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 148/504 (29%), Positives = 254/504 (50%), Gaps = 24/504 (4%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 EL++ + A + G L E+H E E VG+I+ ++ + + G+ AAFV++G Sbjct: 31 NKELIIRSSSEAVDFALLKDGKLIELHKEEEKSNFQVGDIFIAKIRKPVAGLNAAFVNVG 90 Query: 62 LDKAAFLHASDIMPHTECVAGE-------------------EQKQFTVRDISELVRQGQD 102 +K AFLH D+ P+ E++ I++++ Q Sbjct: 91 FEKDAFLHYHDLGPNLASQLKFIKLVSAGKLKDFSLKTFQFEKEIDKDGIITDILSANQS 150 Query: 103 LMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC 162 ++VQVVK+P+ TKG R++ +++L R++V +P + V +SQ+IE + E++RLKK+V Sbjct: 151 VLVQVVKEPISTKGPRISAELSLAGRFIVLVPFSDRVSISQKIEDKKEKDRLKKLVLSIK 210 Query: 163 DEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRD 222 + G I+RT AEG AEL D L W+ + ++ ++ GEL A +LRD Sbjct: 211 PKGFGVIVRTVAEGKNVAELEKDLQNLLGRWSAMCKKLPTAHHPSKVLGELNRASSILRD 270 Query: 223 FADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALE 281 + I++D Y E+ E P S ++ Y PIF+ +++E +I+ + Sbjct: 271 VFNDTFSGIQIDDEELYHQTKEYLQEIAPSKQSIVKFYQSNDTPIFEKYNIERQIKTSFG 330 Query: 282 RKVELKSGGYLIIDQTEAMTTVDINTG-AFVGHRNLDDTIFNTNIEATQAIARQLRLRNL 340 R V + G YLII+ TEA+ +D+N+G N +DT N+ A IARQLRLR++ Sbjct: 331 RTVSMSKGAYLIIEHTEALHVIDVNSGNRSNKATNQEDTAMEVNMIAAAEIARQLRLRDM 390 Query: 341 GGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 GGII++DFIDM+N ++R+ + L + +S D+ K + S GLV++TR+R R + Sbjct: 391 GGIIVVDFIDMSNPENRKVLFDFLREEMSDDKAKHKILPPSKFGLVQITRQRVRPEVNIK 450 Query: 401 LCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSL 460 E P G ++ + +I ++ R+ ++ + ++ P VA L Sbjct: 451 TREEDPN-KVNGEIEAPILIIDKITSDLERLLKTHN--KVVLNTHPFVAAYLSKGFPSLR 507 Query: 461 AEVEIFVGKQVKVQIEPLYNQEQF 484 ++ K VK+ Y ++ Sbjct: 508 SKWFFEHKKWVKIIPRDAYTYLEY 531 >UniRef50_C1PAJ8 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PAJ8_BACCO Length = 492 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 154/488 (31%), Positives = 253/488 (51%), Gaps = 14/488 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +++NV E R A I+ G + I I + VGNIY G+V+ V PG+ AAF+DI Sbjct: 1 MDRSIIINVKTREKRYAVIENGKVSGIRIRQPGDAAKVGNIYLGKVADVKPGINAAFIDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G + +LH S + + IS + GQ +MVQV KD G KG LT Sbjct: 61 GGIRHGYLHISRLPAFANSKN-------SNPTISAYLSPGQTVMVQVKKDETGQKGPLLT 113 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I L +V++P + VS++ +++R R + V + + Q G I+RTAA G Sbjct: 114 GIIELSGEQIVYLPEGKYTAVSKK-ADDADRNRWRNRVRKALEPQEGIIVRTAAIHAGGD 172 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 + L+ + ++E+ + + L+ + + + R+ + + VD Sbjct: 173 GWRDELKCLRLRYKCLLEKAAQLKAPAVLHEKSTVEAEIFRELVRLKSGTVIVDDAEALA 232 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 L PE+ E Y+G+Q IF + ++ ++ AL+R V L++G YL+ID+TEA+ Sbjct: 233 RLKA-LLAGRPELDWSFELYSGKQNIFTRYRIDRTLEDALKRVVWLENGAYLVIDETEAL 291 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+NTG + G + +T+ TN+ A + I RQL+LR+ GGII++DFIDM ++ R +V Sbjct: 292 TIIDVNTGKYTGTTDQAETVLKTNLLAAKEIGRQLKLRDYGGIILVDFIDMQRDEQRAQV 351 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 LE+ L D +T + GF+ LG+++MTRK+TR+S+ L + CP C G G +++ ET+ Sbjct: 352 RAVLEKELENDEKQTRITGFTELGILQMTRKKTRKSLPEALLSVCPVCGGSGKIESPETL 411 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ----IE 476 + + RE+ D + L+ + V + GE L +E +G ++ Sbjct: 412 AFRLERELW-EAPYADYEAVLIECTQDVKDCFCGETDVHLKRLENLLGMKLIFHITRDPH 470 Query: 477 PLYNQEQF 484 P Y QF Sbjct: 471 PFYAIRQF 478 >UniRef50_C9M9G5 Ribonuclease G n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9G5_9BACT Length = 495 Score = 440 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 154/480 (32%), Positives = 252/480 (52%), Gaps = 25/480 (5%) Query: 10 TPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLH 69 E RVA ++ G L+++++E G+IY RV ++ GM AAF+++G + FL+ Sbjct: 13 DEEERRVAVVEDGRLRDLYVEHGRPVQQSGDIYLARVESIVSGMNAAFLNLGDGRNGFLY 72 Query: 70 ASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRY 129 +D + V + +L+VQV K P +KGAR+T ++LP R+ Sbjct: 73 LADAKGFS-------------------VHENGELIVQVTKTPRRSKGARVTPQVSLPGRF 113 Query: 130 LVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYL 189 V++P A VGVS++I S +R+RL+ +V E+GG IIRTAA+ + +LA+D A L Sbjct: 114 FVYLPFAGSVGVSRKIGSAKDRQRLRALVGSV--ERGGVIIRTAAQDAADEDLAADLAQL 171 Query: 190 KRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEY 249 + W ++ + K + L+ E R LRD + + DSR ++A+ F S Sbjct: 172 QEQWERIEQSAKLRMSPGVLWQEDGFLIRALRDELAHHISEVVTDSREAFDAVKGFVSAA 231 Query: 250 IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGA 309 + ++ +F+ + EI+ + KV L SGGYL+IDQTEA+T +D+N+G Sbjct: 232 GAGWSGQVSLLEKGIDLFEYCGLTQEIESLIRPKVLLPSGGYLVIDQTEALTAIDVNSGK 291 Query: 310 FVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALS 369 V +L T+ TN+EA + IARQ+RLR +GGI+I+DFIDM +E R VL +L+ A + Sbjct: 292 CVDGSSLSATVKTTNLEAAREIARQIRLRAIGGIVIVDFIDMESEADRTAVLDALKDASA 351 Query: 370 KDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIV 429 D K V G ++LGL E+TRKRTR + + C +C G E + + R + Sbjct: 352 ADPNKVRVYGMTSLGLAEVTRKRTRLDLRSQMTQPCSSCC-EGRTWKDEALAASVKRRLR 410 Query: 430 RVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM 489 + S LV + +A+ + L E G+++ ++ P ++ + + + Sbjct: 411 KAFAGSSSGWALVAMNDELAQIVAQ---KWLKGWEETFGRRIVLRGLPGASRTDWRIEAL 467 >UniRef50_A5WCI8 RNAse G n=4 Tax=Moraxellaceae RepID=A5WCI8_PSYWF Length = 613 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 198/422 (46%), Positives = 279/422 (66%), Gaps = 8/422 (1%) Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 + + I + +GQ ++VQV KD LGTKGARLTT+I+LPSRYLV++P Sbjct: 191 KPAAVKERQIIEPPRHELIQYRLHEGQKILVQVTKDQLGTKGARLTTNISLPSRYLVYLP 250 Query: 135 GASHVGVSQRIESESERERLKKVVAEYCDE---QGGFIIRTAAEGVGEAELASDAAYLKR 191 + H+G+SQRI++E ER RLK + GG I RTAAE V A+L D YL + Sbjct: 251 SSEHIGISQRIDNEEERHRLKTELGALMQTVNLTGGLIARTAAERVPVAKLEEDIYYLVQ 310 Query: 192 VWTKVMER----KKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTS 247 +W + R Q+ +Y EL+L R +RD + +++ VD Y + +F Sbjct: 311 LWRTIQARKEASAGSGQSAVLIYQELSLPLRSIRDLVHPDTEKVIVDHEGMYNEVRQFAK 370 Query: 248 EYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINT 307 E++P + ++ Y+G QP+FD+ VE +++ AL+R+V+LKSGGYLIIDQTEAMTT+D+NT Sbjct: 371 EFVPFIYPRILPYSGEQPLFDVHRVEEDLRDALKRRVDLKSGGYLIIDQTEAMTTIDVNT 430 Query: 308 GAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQA 367 G+FVG R+L+DT++ TN+EAT AIARQLRLRNLGGIII+DFIDM + H+ VL +L+ Sbjct: 431 GSFVGGRSLEDTVYKTNLEATHAIARQLRLRNLGGIIILDFIDMLEQQHKDDVLENLQYQ 490 Query: 368 LSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMRE 427 LS+D KT + S LGLVEMTRKRTRES+E LC C TC G+G +KT ETVC+EI RE Sbjct: 491 LSQDYAKTKITQVSELGLVEMTRKRTRESLEQQLCEPCKTCEGKGFIKTAETVCFEIFRE 550 Query: 428 IVRVHHAYDS-DRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 I+R Y+S +F V A +V + L E+ ++A++E +G+ + ++E LY QEQ+D+ Sbjct: 551 IMRCARTYNSPKKFTVVAHASVIDLLLSSEADTVADLEYLLGRVITFEVENLYTQEQYDI 610 Query: 487 VM 488 V+ Sbjct: 611 VL 612 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 43/95 (45%), Positives = 62/95 (65%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ ELL+NV+P E+RVA +D G++ E++IER + G+VGNIY G V RVLPGMQAAFV+I Sbjct: 1 MSEELLINVSPMESRVAVLDNGVVSEVYIERHNKLGLVGNIYLGTVVRVLPGMQAAFVEI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISE 95 G + AFLH +D+ ++ + + Sbjct: 61 GQSRTAFLHVNDMRRIARPAPTADKAPEIRHNAKQ 95 >UniRef50_B1I4P9 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4P9_DESAP Length = 416 Score = 437 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 179/413 (43%), Positives = 263/413 (63%), Gaps = 7/413 (1%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 E++V+ + TRVA ++ + E++IE + +VG+I+KG V VLPG++AAFV++G Sbjct: 3 KREIIVSTRDNATRVALLENRVPMEVYIEPDEEICLVGSIFKGVVENVLPGIEAAFVNVG 62 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 LD+ AFL+ +D++P + + I +L+ GQ+++VQV KDPLG KG R+T Sbjct: 63 LDRNAFLYVNDVLPQ------SARADQSAAGIRDLLHPGQEVIVQVAKDPLGNKGPRVTM 116 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 + LP Y V MP +HVG+S+RIE ESERERL++VV E G I+RTAA G+ Sbjct: 117 RVNLPGHYTVLMPTVNHVGISRRIEDESERERLREVVHRARPEGMGAIVRTAARGIAAEV 176 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 LA D L+++W + +R+ LY E L R++RD E++R+ +DS +Y Sbjct: 177 LADDIRELEKLWRDIQKREAGAAAPSLLYRECGLLPRIIRDLFTEEIERLVLDSFTSYAR 236 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 L P++ S++ + + IF+ ++V EI +AL+RK L+ GGYLI DQ EA+T Sbjct: 237 SLTILDTVNPQLKSRV-FWEDKPDIFEAYNVNQEINKALQRKTWLRCGGYLIFDQAEALT 295 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+NTG F G +L+DT++ TN+EA IARQLRLRNLGGIIIIDFIDM++E+HR RVL Sbjct: 296 VIDVNTGRFTGRVDLEDTVYKTNLEAAVEIARQLRLRNLGGIIIIDFIDMSHEEHRNRVL 355 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L + + KDR +T + G + LGLVE+TRK+ S+ +L CP C G G + Sbjct: 356 EVLGEEIKKDRRRTHIMGLTRLGLVELTRKKVHPSLAELLLTNCPQCGGTGKI 408 >UniRef50_D2LS23 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LS23_BACS4 Length = 456 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 156/447 (34%), Positives = 259/447 (57%), Gaps = 8/447 (1%) Query: 41 IYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQG 100 ++ GRV ++PGM+AAFV+IG DK FL+ ++++ + + +++ I+ ++++G Sbjct: 1 MFIGRVEDIVPGMEAAFVNIGADKNGFLYRNELI-AYDTLKDDKEPDVKQPTIASMLKEG 59 Query: 101 QDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE 160 Q ++VQV K+ +G KG RLT I+LP +Y+V++P ++V VS++ +E R+ ++ E Sbjct: 60 QSIIVQVTKEAVGAKGVRLTEKISLPGKYIVYLPYGNYVAVSKK-MNEENRKGWREKARE 118 Query: 161 YCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVL 220 + +++ G IIRT AE E+ + L+ +++++ ++ L + +L RV Sbjct: 119 WIEDREGIIIRTNAEDASHEEIYHEFTLLRHQHQQMLQQAEKVNVPNVLLNQSSLISRVQ 178 Query: 221 RDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRAL 280 RD+ + I VD +YE LL + Y ++ IF +D+E +++AL Sbjct: 179 RDYLTNKNSEIVVDHFESYEQLL-----NSSLEGCNIHLYQEKEDIFSYYDIEKHLEKAL 233 Query: 281 ERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNL 340 KV LKSGG+LII++TEA+T +D+NTG F G NL DT+ TNIEA A+A+QLRLRN+ Sbjct: 234 HEKVWLKSGGFLIIEKTEALTVIDVNTGKFTGKHNLRDTVVKTNIEAAYAVAQQLRLRNI 293 Query: 341 GGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHV 400 GGII+IDFIDM E ++ VL +L++A DR T+V GF+ GLVEMTRK+ R+ + + Sbjct: 294 GGIILIDFIDMKVESDQKSVLKALKEATKNDRTLTNVAGFTNFGLVEMTRKKARKPLHDI 353 Query: 401 LCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSL 460 + C C G G V ++++ + RE+ + D D LV AV E+L + L Sbjct: 354 MMESCSVCKGTGQVLSLKSKIAHLEREVFAL-RYIDQDAILVEVDSAVYESLLQNNNDLL 412 Query: 461 AEVEIFVGKQVKVQIEPLYNQEQFDVV 487 +E V K + + + ++ Sbjct: 413 TSMEQVVNKTIYLVNGENGHLPTIRLI 439 >UniRef50_Q83MU7 Ribonuclease G n=2 Tax=Tropheryma whipplei RepID=Q83MU7_TROWT Length = 549 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 160/447 (35%), Positives = 243/447 (54%), Gaps = 22/447 (4%) Query: 3 AELLVNVTP-SETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +LV + S+ +V ++ GIL E ++ R A +VGNIY GRV VLPGM+AAFVDIG Sbjct: 66 RVMLVRGSGASDVQVGILEEGILVEYYMARGASSSLVGNIYMGRVQNVLPGMEAAFVDIG 125 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 + A L++ + + + I VR+G ++VQV KD + KG R+T Sbjct: 126 CGRNAVLYSGEAVWE----------GVKAQSIENTVREGSSVLVQVTKDAVANKGPRVTG 175 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 ++L RYLV+ PG+ GVS+RI SER RL+K + ++ IIRTAA G + Sbjct: 176 QLSLAGRYLVYAPGSG--GVSRRIAP-SERARLQKSLKAAVEDVSSLIIRTAAVGATSEQ 232 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L +DA L + + E+ + +Y E L R+LRD + + + V+ YE Sbjct: 233 LGNDAKMLCEAYRAIKEKSENATAPSIIYSEPDLLIRLLRDTFNNDFKELIVEGAELYER 292 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 + + + PEM K+ + + +FD + + +I R+L RKV L SGG L++D TEAMT Sbjct: 293 VNSYLQDVSPEMLGKVSK-SSEEDLFDAYRITEQIDRSLNRKVLLPSGGSLVVDHTEAMT 351 Query: 302 TVDINTGAFVG-HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+NTG FVG +L+ T+ + N+EA I RQ+RLR+LGGI++IDFIDM +++R V Sbjct: 352 VIDVNTGKFVGTSSSLEQTVTDNNLEAVDEIVRQIRLRDLGGIVVIDFIDMLLQENRDLV 411 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT---- 416 + L +ALS DR + V ++LGLV+MTRK+ ++ + C C GRG V Sbjct: 412 YNRLLEALSLDRSRHKVAEITSLGLVQMTRKKLGVAL-EPVSELCDRCSGRGRVINPVPN 470 Query: 417 -VETVCYEIMREIVRVHHAYDSDRFLV 442 +R++ + Sbjct: 471 KPRARKKHRLRQVNKEASDAAVRIISA 497 >UniRef50_Q7U4C5 Ribonuclease E n=16 Tax=cellular organisms RepID=Q7U4C5_SYNPX Length = 663 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 144/416 (34%), Positives = 228/416 (54%), Gaps = 17/416 (4%) Query: 1 MTAELLVNVTPSETRVA-YIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M ++++ + R+A + + E+ + + R +G++Y G V VLPG+ AAFV+ Sbjct: 14 MPQQIVIA---EQLRIAAVLTDERVDELIVAQG--RYQIGDVYLGTVENVLPGIDAAFVN 68 Query: 60 IGL-DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 IG +K F+H +D+ P + + I+EL+ Q ++VQV+K+P GTKG R Sbjct: 69 IGESEKNGFIHVTDLGPL--------RLKKGSAGITELLEPRQKVLVQVMKEPTGTKGPR 120 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 LT ++ LP RYLV P V +S+RI SE+ER RL+ + G +IRT A+G+ Sbjct: 121 LTGNLALPGRYLVLQPHGQGVNISRRISSEAERNRLRALGVLIKPPGAGLLIRTEADGIA 180 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 E +L D L R W + + + L + R+LRD +L R+ VD Sbjct: 181 EDQLIDDLESLLRQWEAIQQAAETAAPPVLLNRDEDFINRILRDHTSTDLVRVVVDEPAA 240 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + F ++ +E ++ + + F V I+ AL+ +V+L SGGY+II+ TE Sbjct: 241 VARVSSFLGAEADKVL--VEAHSEPSELLEHFKVNAAIRDALKPRVDLPSGGYVIIEPTE 298 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +D+N+G+F N +T+ TN EA IARQL+LRN+GG+IIIDFIDM++ + Sbjct: 299 ALTVIDVNSGSFTRSANARETVLWTNCEAAIEIARQLKLRNIGGVIIIDFIDMDSRRDQL 358 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 ++L A+ D + + + LGLVE+TRKR ++I + CP+C G G V Sbjct: 359 QLLEHFTTAVRDDAARPQIAQLTELGLVELTRKRQGQNIYELFGRACPSCGGLGHV 414 >UniRef50_A8GXM7 Ribonuclease E n=15 Tax=cellular organisms RepID=A8GXM7_RICB8 Length = 693 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 121/426 (28%), Positives = 223/426 (52%), Gaps = 4/426 (0%) Query: 68 LHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPS 127 L A+D + + E Q+ + +++R+ Q L+VQV K+ G K A TT ++L Sbjct: 144 LEAADDIEIIQSDKEENIPQYKQYKVQDVIRKNQILLVQVTKEERGNKCAAFTTYVSLAG 203 Query: 128 RYLVFMPGAS-HVGVSQRIESESERERLKKVVAEYCDEQ---GGFIIRTAAEGVGEAELA 183 +Y V MP + G+S++I + ER+RLK ++ + + IIRTA G +L Sbjct: 204 KYCVLMPNKAAQNGISRKISNGDERKRLKNILNKVVNGDKSPYSVIIRTAGRGCSTLDLK 263 Query: 184 SDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL 243 D +YL R+W K+ + + ++ E ++ ++ +RD D + + + + YE Sbjct: 264 KDYSYLSRLWNKIRKSTVKFPAPCFIHEEDSIIRKTIRDMCDHNVKEVIIYGQEAYEDAA 323 Query: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 +F + +P +KL+ + + PIF F VE ++ + + V L SGGY++I+ TEA+ ++ Sbjct: 324 KFMQDLLPSEMTKLKEHKSKTPIFTKFQVEEQLIKLYQPVVTLPSGGYIVINPTEALISI 383 Query: 304 DINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 D+N+G +N+++T TN+EA + IARQ++LR+L G+I++DFIDM+ +R+ + S Sbjct: 384 DVNSGRSTSEKNIEETALKTNLEAAKEIARQVKLRDLSGLIVVDFIDMDETKNRKIIERS 443 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYE 423 ++ LS+DR + S GL+E +R+R R S + C C+G+G V+ E+ Sbjct: 444 FKEFLSRDRARIQTGNISQFGLLEFSRQRLRFSFLETNSSICSHCNGKGVVRADESNAML 503 Query: 424 IMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQ 483 I+R I D V+A+ + L + + +E ++ +P + Sbjct: 504 ILRTIENEIFEDRIDIINVFANVSSVIYLLNNKRQEIKFIEEKYNIRLNFYSDPNATSDS 563 Query: 484 FDVVMM 489 + + + Sbjct: 564 YSIEKV 569 Score = 83.4 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Query: 1 MTAELLVNVT-PSETRVAYI-DGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFV 58 M +++++ +ETRV + +++I + ++ GNIY +V+R+ P +QA F+ Sbjct: 1 MNKKIIIDANFSNETRVVLLGQSNNIEDIEFQTTRKQQNKGNIYLAKVTRIEPSLQAVFI 60 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQF 88 + G+DK+ FL S+I P+ + E+ Sbjct: 61 EYGMDKSGFLPFSEIHPNYYNLPASEKNFP 90 >UniRef50_Q2GES6 Ribonuclease, Rne/Rng family n=2 Tax=Neorickettsia RepID=Q2GES6_NEOSM Length = 549 Score = 426 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 132/498 (26%), Positives = 235/498 (47%), Gaps = 15/498 (3%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++L++ ETR+A + G+L E GNIY+G V +V +QAAFV+ Sbjct: 2 KKILIDSRDGETRLAILRSGLLVGYDCEHTNSLPQKGNIYQGIVFKVDDSLQAAFVEYLP 61 Query: 63 DKAAFLHASDIMPHTECV----------AGEEQKQFTVRDISELVRQGQDLMVQVVKDPL 112 + FL S+I + G+ + + +E++++G L VQV K+ Sbjct: 62 GEYGFLPFSEIPVIYFDLLEEVKANAIAEGKHVNLYKHFNATEVIKKGLVLFVQVTKEKR 121 Query: 113 GTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE-YCDEQGGFIIR 171 TK LT + LP RY V MP + +S++I E RL E + + G + + Sbjct: 122 RTKDVTLTAYVKLPGRYCVLMPFLKDLILSKQIVDEQAVSRLTHFAEEEMANRKCGVVFK 181 Query: 172 TAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRI 231 + + D L W KV+ + + + ++ E L ++ LRD D + + Sbjct: 182 PYCADADKKNILGDYCSLLSEWEKVVSQNDKSKAPRLVFREANLVKKFLRDSYDGSVGEV 241 Query: 232 RVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGY 291 V+ Y+ ++ + + Y+ P+FD + VE ++ E + L++G Y Sbjct: 242 IVNHSDVYQEAKDYIQNSLHFENPNITLYSDTLPVFDKYKVEPQVDGLYEETIYLRNGAY 301 Query: 292 LIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDM 351 ++I+ TEA+T VD+N+G N+++T + N+EA I R L LR + GI++IDFIDM Sbjct: 302 IVINTTEALTAVDVNSGRMKKESNIEETAYKVNMEAVAEIVRHLELRGIAGIVVIDFIDM 361 Query: 352 NNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGR 411 NN + V +L A + R + + + GL+ ++++RT+ +I +CP C G+ Sbjct: 362 NNSKYMLNVERALLDAFKRYRSRVQIAPINKFGLIALSKQRTKHNILDSHTVKCPCCEGK 421 Query: 412 GTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQV 471 G V +E +++ R ++ A V A+P +A A+ LA+ E VG + Sbjct: 422 GKVLKME---HQVRRVFSAIYTAPRCREVTVTANPELAVAVFNGYRKMLAQAEKVVGGSI 478 Query: 472 KVQIEPLYNQEQ-FDVVM 488 +I+ + F++ Sbjct: 479 VFKIDEKLGLAKGFEIAF 496 >UniRef50_A8F3K6 Ribonuclease, Rne/Rng family n=1 Tax=Thermotoga lettingae TMO RepID=A8F3K6_THELT Length = 470 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 159/488 (32%), Positives = 255/488 (52%), Gaps = 23/488 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +L++N+ + VA + G+LQEI E + GNIY GR+ +++PG+ AAFV+I Sbjct: 1 MANQLVINIQEEKVNVAILSDGVLQEIFSE--EDESLSGNIYVGRIEKIIPGLNAAFVNI 58 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G ++ FL +DI V++G ++VQV D +GTKG +LT Sbjct: 59 GGNRNGFLKLTDITKQYIS-----------EVTKSPVKEGIKILVQVKHDAIGTKGPQLT 107 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I+L R+LV+ P + GVS++++ ER RL+++ + G +IRTAAE V E Sbjct: 108 GKISLAGRFLVYFPLSKVRGVSKKVQEPKERVRLQELSRSLA-KNDGVVIRTAAEFVPEE 166 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 +A + LK W KV++ KR + L E +LR+ + ++D + V++R YE Sbjct: 167 YVAEEFNQLKSEWRKVLQSFKRARKIKLLRREPTTVDYILRERLNKDIDEVHVNTREIYE 226 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + E + K Y +FD + ++I + ER + L SGGY+ +D TEAM Sbjct: 227 KVKE----VSKRLAKKPMIYFFEGDLFDKLCIYSQIGQLQERIIHLPSGGYIALDTTEAM 282 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T D+N+ +FV +N D + TN+EA IARQLRLRN+GGI+I+DFIDM ++ + R+ Sbjct: 283 TVFDVNSASFVSEKNHADLAYKTNVEAAYEIARQLRLRNIGGIVIVDFIDMPSKTYYDRL 342 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 L+QA+ D + GF+ LGL+EMTRKR SI+ +L + CP C G G V + V Sbjct: 343 TKELQQAIRNDSAHIELIGFTKLGLLEMTRKRRSPSIDQLLFSGCPICKGTGRVVSPHIV 402 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 ++ E+ ++ + + V ++ + + + + + + N Sbjct: 403 VRRVINELSKIENISEYSSVKVILHQRLSGYTEKIKKSLSSTIVEKIRFSFE-----GSN 457 Query: 481 QEQFDVVM 488 F VV Sbjct: 458 PGDFSVVF 465 >UniRef50_Q2B6H0 Cytosolic axial filament protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B6H0_9BACI Length = 492 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 156/488 (31%), Positives = 263/488 (53%), Gaps = 11/488 (2%) Query: 3 AELLVNVTPSETRVAYI-DGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L++N E R A + + G +++ I++ VG+IY G V++VLPGM AAFV+IG Sbjct: 2 KKLVINYATREKRYAVLNESGKPEKLIIDQPKNLSAVGSIYLGTVAKVLPGMNAAFVEIG 61 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 +K+ FLH + + + E++++ + IS VR+G+ L+VQV KD GTKG RLT Sbjct: 62 EEKSGFLHRDRL--ASYVRSAEDKEKKDKKSISSFVREGEKLLVQVEKDAAGTKGPRLTN 119 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 I L++MP +V VS++IE +S RE L+ + + +E+ G I RT+A G E + Sbjct: 120 VIEFQGEKLIYMPFGRYVAVSRKIEKDSAREELRTLGMKLKEEEEGLIFRTSAAGASEED 179 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 + L+ ++ ++ + +L + + + A + VD + Sbjct: 180 FQKELEELRAEHRELAKKAASVKKPAKLAEKETFLEEAAAEMARLGAGEVVVDDLAVKQK 239 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 L + +E S + +Y ++ IF ++++ EI RAL++ V L +G YLI D+ EA+T Sbjct: 240 LEKAAAE------SVVRYYNNKESIFSAYNLDQEIDRALKKIVWLDNGAYLIFDEAEALT 293 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+NTG + G NL DT+ TN A ARQ+RLR++GG+I+IDFIDM E R+ + Sbjct: 294 VIDVNTGKYSGRENLRDTVLRTNEWAAAEAARQIRLRDIGGMILIDFIDMKEERDRQHIS 353 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 +E+ L KD +T + GF+ LG++++TRK+TR ++ L +C C G G + + ET Sbjct: 354 RVMEKELRKDERRTRIVGFTPLGILQITRKKTRAALSESLTVKCTACEGTGRMVSAETAA 413 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQ 481 + + REI D + L+ S V + GE+ +E G ++ E Sbjct: 414 FRLEREIW-EMRGSDYEAALIRLSADVLDVFSGEQGIHRKRLEATCGLRLFFAAEDS-RI 471 Query: 482 EQFDVVMM 489 +++ + Sbjct: 472 PFYEIRQL 479 >UniRef50_A8UTH4 Cytoplasmic axial filament protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UTH4_9AQUI Length = 466 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 143/454 (31%), Positives = 251/454 (55%), Gaps = 18/454 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M L+++ + + + + EI +E+ ++ + G+I+KGRV R + AFVDI Sbjct: 1 MDVRLIISASRNLVLTFLLKEKEISEIKVEKRGKKRLSGSIFKGRVKRFAKSLDGAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G+ K A+L L +G +++VQ+ ++P+ KGA++T Sbjct: 61 GIGKEAYLPLKAYENTALEEDES----------CPLPEEGSEILVQMKREPIEDKGAKVT 110 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I++P ++LV++P + V VS +IE E+ R K++ DE+ G I+RT+AE E Sbjct: 111 CRISIPGKFLVYLPTSKKVFVSSKIEDENRRAFFKELFERALDEE-GVIVRTSAEFATEE 169 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 EL ++ L+ W ++ ER + + +Y E+ +++RD+ + ++ I VD R + Sbjct: 170 ELLAELQKLRNTWKEIKERSASIK-QGLVYEEVPAYVQLVRDYWN-DVSEIIVDDRELWS 227 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 LL Y PE+ K+ + F + ++ + R R V L++GGY+II++TEAM Sbjct: 228 ELLAELESYFPELVGKVRYVKNISVFFKKYGLDKALTRLFARYVWLRNGGYIIIEETEAM 287 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+N+G+ G L+D TN+EA + I RQ++LR++GGI+IIDFIDM N+ +R ++ Sbjct: 288 TVIDVNSGSGCGD-TLEDNALQTNLEAAEEIVRQIKLRDIGGIVIIDFIDMKNKKNREKL 346 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 + +++ + + K V G + LGL+E+TRK+ S+ +L CP C G+G +K+ E V Sbjct: 347 VKRVKELFADEGSKVHVYGITHLGLLELTRKKETPSVTRLLSINCPYCKGKGYIKSPEVV 406 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKG 454 YEI +EI + + V +PA+ E ++ Sbjct: 407 LYEIEKEI----NYFKGRYLEVRVNPALKERVEN 436 >UniRef50_A5CEM7 Ribonuclease E n=2 Tax=Orientia tsutsugamushi RepID=A5CEM7_ORITB Length = 675 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 109/421 (25%), Positives = 212/421 (50%), Gaps = 4/421 (0%) Query: 73 IMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVF 132 + E ++I +++ GQ ++VQ K+ G K A TT I+L +Y + Sbjct: 147 VSKQNSQEIAEFLPPHKQQEIQDVISSGQIVLVQATKESRGNKNASFTTYISLSGKYCIL 206 Query: 133 MPG-ASHVGVSQRIESESERERLKKVVAEYC---DEQGGFIIRTAAEGVGEAELASDAAY 188 P ++H G+S+RI + +R++LK +V + IIRTA E+ D Y Sbjct: 207 TPNLSNHSGISRRITNSEDRKQLKTIVGNLISKITKTSSVIIRTAGSRRTAYEIKKDFNY 266 Query: 189 LKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSE 248 L ++W +++ K+ + +Y E + ++ + D + + + + + Y+ ++F + Sbjct: 267 LLKLWNEIINTAKQAKPPAFIYVENDIIRKTILDIYNISVQEMIIQGKAAYDYAVKFMNA 326 Query: 249 YIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTG 308 +P K++ + PIF +++E ++ + V L SGGY++I+ TEA+ +D+N+G Sbjct: 327 ILPSEVHKIKEHKSTIPIFAQYNLEEQLATLYKPIVTLPSGGYIVINPTEALIAIDVNSG 386 Query: 309 AFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQAL 368 +N+++T TN+EA + I+ Q++LRNL G+I IDFI M + + + + S ++ L Sbjct: 387 KDTSEQNIEETAVKTNLEAAKEISHQIKLRNLSGLITIDFICMTDSKNHKLIEKSFKKYL 446 Query: 369 SKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREI 428 +KD+ K V+ ++ G+++++R+R R S C C G+G V+ E+ I+R I Sbjct: 447 AKDKAKIQVDSINSFGVLQLSRQRLRPSFLESNSVICSHCSGKGIVRAEESNAMIILRTI 506 Query: 429 VRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 H S+ VYA + + +A++E Q+K + + F + Sbjct: 507 ENEIHTSKSNIINVYAHLHSVTYILNNKRTEIADIEKKYNVQLKFYNDFQSTSDSFSIEK 566 Query: 489 M 489 + Sbjct: 567 V 567 Score = 92.2 bits (228), Expect = 3e-17, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 2/96 (2%) Query: 1 MTAELLVNVT-PSETRVAYIDGG-ILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFV 58 MT +LV+ + P+ETRVA ID + EI E ++ I GNIY ++++ P +QAAF+ Sbjct: 1 MTKRILVDASYPNETRVALIDNNCRIAEIEYETASKHLIKGNIYLATITKIEPSLQAAFI 60 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDIS 94 D K+ FL S+I P TV + Sbjct: 61 DYSNGKSGFLPFSEIHPDYYNNVTNSLPFDTVPLVE 96 >UniRef50_A9RK39 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RK39_PHYPA Length = 727 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 135/468 (28%), Positives = 232/468 (49%), Gaps = 21/468 (4%) Query: 40 NIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQ 99 I + V + G F D +K S + V + Sbjct: 214 GIARSIVVDRVSGEAENFKDSPEEKVQVKKLSKAWEPHRQGSPITVNFGRKFSKWRNVEE 273 Query: 100 GQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVA 159 G ++VQV K+ +G KG RLT +L R+ V +P + VGVS RI ER RLK + Sbjct: 274 GMPIIVQVKKESMGKKGPRLTAFPSLAGRFWVLIPRGNSVGVSARITGP-ERRRLKLLAQ 332 Query: 160 EYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMER----------KKRPQTRYQL 209 + E G +RT A G + EL D L W ++ME+ + L Sbjct: 333 KLQPEDLGITVRTEAIGHEQEELERDLTRLMDAWKEIMEKAAAAAVAVERGEEAAVPVLL 392 Query: 210 YGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDL 269 + E+ ++RD ++ R+ VDS +++ ++ + E P + +++ Y+G+ PIFD Sbjct: 393 HREMGQTLTIIRDLFTEKVSRVVVDSAQSFQEVINYLQEVAPHLMNRVVLYSGKVPIFDK 452 Query: 270 FDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDIN--TGAFVGHRNLDDTIFNTNIEA 327 F+VE+++ + +V+L +GGYL++ +TEA+ ++D+N TG + I N N+ A Sbjct: 453 FNVESDLDKFFSERVKLPNGGYLVMQETEALVSIDVNGGTGMLGHSMKQREAILNVNLAA 512 Query: 328 TQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVE 387 + IA ++RLR++GGII++DFIDM+N + + V + +A+ +DR K S++ S GL+E Sbjct: 513 AKQIAHEIRLRDIGGIIVVDFIDMDNHEDEKLVYEEMRRAIQRDRSKVSISEISEYGLME 572 Query: 388 MTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDS--------DR 439 MTRKR R S+ + + + C C G G V+ +ET +I R I RV + + Sbjct: 573 MTRKRVRPSVTYTIHSSCACCKGTGRVEALETTLSKIERAIRRVLADHPDVSSDASTWPQ 632 Query: 440 FLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 L+ P++ E LK + + ++ + + +++ + QF+V Sbjct: 633 ILLRVEPSMLEFLKSWKKKRIIQLGHSLRVWINLKLGMELSHGQFEVT 680 Score = 75.7 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 4 ELLVNVTPS-ETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 E+L+N + R+A ++ + E IE + VGNIY GRV ++LPGM FVDIG Sbjct: 73 EILINTSECTMQRMAILENKKVVEFSIEPVNTKVQVGNIYLGRVKQLLPGMSGVFVDIGG 132 Query: 63 DKAAFLHASDIMPHTECVA 81 + A L + Sbjct: 133 PRLALLDIARNQYPYTFPP 151 >UniRef50_B3QZC2 Ribonuclease, Rne/Rng family n=12 Tax=Chlorobiaceae RepID=B3QZC2_CHLT3 Length = 582 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 130/413 (31%), Positives = 224/413 (54%), Gaps = 3/413 (0%) Query: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 ++ + I+ ++ ++VQV+K+P+ KGARLT+DIT+ R++V +P Sbjct: 153 EDAAGEKRNRRMSYTQMIASKLKPNDSILVQVIKEPISNKGARLTSDITIAGRFMVLLPF 212 Query: 136 ASH-VGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWT 194 S + +S+RI + ER RLK +V + G I+RT AE E L +D L W Sbjct: 213 GSGHLAISKRIVNRRERRRLKGIVRSILPKGFGAIVRTVAEEQDELLLKTDLEKLLAKWK 272 Query: 195 KVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMT 254 ++ E K + ++ E + VLRD ++ + +S+ Y+ L F PEM Sbjct: 273 QIEETVKDAKPPKLIFKEDTMISSVLRDSLTEDVTELVTNSQHIYKETLTFVRWAAPEME 332 Query: 255 SKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR 314 ++ HY G+ P+F+ + + +++ RKV LKSGGYLII+ TEAM +D+N+G + R Sbjct: 333 KRVSHYKGKLPLFESYGIAKDVESIFSRKVWLKSGGYLIIEHTEAMVVIDVNSGRYAAKR 392 Query: 315 NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVK 374 ++ TN+EA + I+RQLRLR++GGII++DFID+ +E + R+V +++ +DR K Sbjct: 393 EQEENSLKTNLEAAKEISRQLRLRDIGGIIVVDFIDLLDEKNARKVYDTMKTEFRRDRAK 452 Query: 375 TSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHA 434 +++ S GL+++TR+R R S+ + +ECP C G G V+ T ++I R + + Sbjct: 453 SNILPMSEFGLMQITRERIRPSLMQRMGDECPACGGSGVVQARHTTIHQINRWLRKYALN 512 Query: 435 YDS--DRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFD 485 + +R +Y S VA+ L + + + + V V+ + + F Sbjct: 513 GNHAFERLDLYVSQTVAQPLFQDAMNPQWKWFLQHLLFVNVKTDDSLRSDDFR 565 Score = 94.1 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/78 (43%), Positives = 47/78 (60%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +LL+N + E +VA ++ G L E+ IER VG+IY GRV +V+ G+QAAF+DIG Sbjct: 5 KKQLLMNKSGDEVQVALVEDGRLAEVFIERPESTRNVGDIYLGRVQKVVEGLQAAFIDIG 64 Query: 62 LDKAAFLHASDIMPHTEC 79 FLH SD+ E Sbjct: 65 HSSDGFLHFSDVGTTNED 82 >UniRef50_A2BYM7 S1 RNA binding domain:Ribonuclease E and G n=8 Tax=Prochlorococcus marinus RepID=A2BYM7_PROM5 Length = 608 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 132/418 (31%), Positives = 232/418 (55%), Gaps = 15/418 (3%) Query: 1 MTAELLVNVTPSETRVA-YIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M+ ++++ + R+A + + E+ + + + +G+I+ G V VLPG+ AAF+ Sbjct: 1 MSQQIIIA---EQARIAALLTDDRVDELIVAQG--QYQIGDIFLGTVENVLPGIDAAFIH 55 Query: 60 IGL-DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 IG +K F+H SD+ P + + V I+EL+ Q ++VQV+K+P G KG R Sbjct: 56 IGESEKNGFIHVSDLGPL--------RLKKGVVGITELLEPKQKVLVQVMKEPTGNKGPR 107 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 LT +I+LP +YL+ P V +S++I +++ER RL+ + G + RT AE + Sbjct: 108 LTGNISLPGKYLILQPFGQGVNISRKINTDTERSRLRALGVLIKPPSTGLLFRTEAEKIK 167 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 E L D L + W +V++ + Q + + + ++LRD A ++ +D+++ Sbjct: 168 EELLIEDLENLIQQWDQVLKISETCQPPNLINRDEDFSLKILRDCIKASTSKVVIDNKVA 227 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 E +F + L + + I + + + IQ+ALE +V+L SGGY+II+ TE Sbjct: 228 LEKAKDFLINNDSNVDLVLHNNDINEHILEKYQINKTIQKALEPRVDLPSGGYIIIEPTE 287 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A+T +D+N+G+F N T+ TN EA I+RQ++LRN+GG+++IDFIDM + + Sbjct: 288 ALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQMKLRNIGGVLVIDFIDMESRRDQF 347 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 ++L A+ D + + + LGLVE+TRKR ++I + +C C+G G +K+ Sbjct: 348 QLLEQFTLAIKDDSARPQIAELTELGLVELTRKRQGQNIYELFGKKCNACNGLGHIKS 405 >UniRef50_B2V9I2 Ribonuclease, Rne/Rng family n=4 Tax=Hydrogenothermaceae RepID=B2V9I2_SULSY Length = 470 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 145/495 (29%), Positives = 255/495 (51%), Gaps = 32/495 (6%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +L+V T ++ I E+ IE G+IYKG+V R M+A FVDI Sbjct: 1 MDRKLIVTKGFKNTFYLILEDNIPVELKIEDIEISKQTGSIYKGKVLRYSQAMEAFFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK AFL DI + + + +G ++VQV + P+ TKGA+L+ Sbjct: 61 GEDKEAFLPKKDICEE----------------VCKNIDKGSSILVQVKRSPVSTKGAKLS 104 Query: 121 TDITLPSRYLVFMPGASH-VGVSQRIESESER----ERLKKVVAEYCDEQGGFIIRTAAE 175 I+LP +YLV +P + + +S + E ER ER+K ++ E E G IIRTAA+ Sbjct: 105 CKISLPGKYLVLLPQSKGKISISSKYEDNDERNEIKERIKNLLHEINQENFGLIIRTAAK 164 Query: 176 GVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDS 235 + + D +L +W ++ + + + +Y E A +LRD+A I D Sbjct: 165 DAPDEAILEDFKFLIELWNQIQKDYNKKKAPSVIYEEPFKAFAILRDYAG-SFSEIISDD 223 Query: 236 RLTYEALLEFTSEYIPEMTSKLEHYTG-RQPIFDLFDVENEIQRALERKVELKSGGYLII 294 + + +F E K+ Y ++ +F ++++ I + L LKSG YL+I Sbjct: 224 VSILKLIKKFVLENFTNANIKMTPYRKRKESLFYEYELDKLINKILSPYAYLKSGSYLVI 283 Query: 295 DQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNE 354 +TEA+ +D+N+G+ +NL++T F N+EA I RQ+RLR+L GI++IDFIDM N+ Sbjct: 284 QETEALVVIDVNSGSCHKQKNLEETAFRINLEAIPEIVRQIRLRDLSGIVVIDFIDMINQ 343 Query: 355 DHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 +H+ ++ L++ KD+ + G + LGL+E++RK+ ES+ L + C C+GRG + Sbjct: 344 EHKEAIVERLKEEFKKDKRPVKIKGLTQLGLLELSRKKLEESLIKQLSDYCQHCYGRGYI 403 Query: 415 KTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQ 474 K+ + V +E+ + I ++ + + +P +++A+ + + + V+++ Sbjct: 404 KSQDVVIFELEKTINKL---KPFAKMKIIINPKLSKAVDNLLENLKLK------ELVEIE 454 Query: 475 IEPLYNQEQFDVVMM 489 ++F+V + Sbjct: 455 YNNKMQLDKFEVEKV 469 >UniRef50_A9VIS0 Ribonuclease, Rne/Rng family n=78 Tax=Bacillus RepID=A9VIS0_BACWK Length = 469 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 157/470 (33%), Positives = 256/470 (54%), Gaps = 28/470 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 L +N T SE RVA + + E+ +R + IVG+IY GR+ R + GM AAFV+IGL Sbjct: 9 KTLYINYTGSEKRVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGL 68 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K A+L D+ + +GQ ++VQVVK+ + TKG +LT Sbjct: 69 EKHAYLSFDDVPSSYR------------------IHEGQAILVQVVKEAIDTKGPKLTAK 110 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I +Y+V+MP VS++I++ R++L + + GG+I R+A+E E+ Sbjct: 111 IEFTGKYVVYMPYDEMRAVSRKIKNNKRRQQLLGI---EVEGTGGYIFRSASEKGTIDEI 167 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 ++ L++++ ++ ++ + + L+ RV ++ +++I VD+R + L Sbjct: 168 QAEMQGLQQLYEELKRKEDQGKAPLLLHQPATFLDRVFQENPIETIEKIVVDTRSIVKEL 227 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 E ++ Y + +F+ F ++ EI++AL++ V L +G YLI++Q E MT Sbjct: 228 EEKVG------KERVAFYNEKSSMFNHFGIDREIEKALQKIVWLPNGAYLIVEQMETMTV 281 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+NTG F G +NL DT+F TN A + IARQLRLR++GG+I+IDFI+M + + +V Sbjct: 282 IDVNTGKFTGKQNLQDTVFRTNEMAAEEIARQLRLRDIGGMILIDFINMKRREDKEKVRE 341 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L AL DR T V GF+ LG++EMTRKR + S+ VL EC C G V + ET+ Y Sbjct: 342 RLMIALQDDRTYTRVLGFTELGILEMTRKRKKHSLRDVLLEECAPCKATGYVISNETIAY 401 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVK 472 E+ RE++ + D + L+ AS V + +E EI+ + Sbjct: 402 ELERELITYGNIED-EAVLIAASKKVQKHFSQKELQKNIPFEIYFKDDII 450 >UniRef50_C9XNN6 Ribonuclease g n=8 Tax=Clostridium RepID=C9XNN6_CLODC Length = 473 Score = 407 bits (1046), Expect = e-112, Method: Composition-based stats. Identities = 157/486 (32%), Positives = 259/486 (53%), Gaps = 22/486 (4%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++++ + A ++ L E+ +E + V NIY+G V +V+PG++A FVDIG Sbjct: 2 KKIVIESLIGSQKTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDIGF 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K A+L ++ GQD++VQ+ K+ +GTKGA+L T+ Sbjct: 62 KKLAYLQLKK---------------------GSTIKSGQDILVQINKEEIGTKGAKLNTE 100 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I++ RY+V++P +S +I E ER RLKK+ E G IIRT A+G E+ Sbjct: 101 ISISGRYIVYIPSNDRTTISNKITDEKERFRLKKITKAVNKENLGLIIRTEAQGCTHDEI 160 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 D LK + +++ K LY L A + ++D + +++ I +S Y L Sbjct: 161 KKDIEELKLKYENILKEYKLGIGPKLLYKSLDFATKYVKDNVNDDIESIITNSYDKYSEL 220 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 KL + +FDL+ +E++I++ L +KV LKSGGYLII++TEA+T Sbjct: 221 KSILRGIDKTYVDKLCL-EENRDVFDLYRIESKIEKLLNKKVWLKSGGYLIIEKTEALTV 279 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+NTG F+G LD+T++ TN+EA + I RQL +R++ GIIIIDFIDM+ + H++ +LH Sbjct: 280 IDVNTGKFIGTGKLDETVYKTNLEAAKEIVRQLIIRDIAGIIIIDFIDMHKKKHQKEILH 339 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 LE+ +KD+ K V G + LGLVE+ R+R +ESI+ CP C G T+K+V + Sbjct: 340 ILEEEFNKDKRKAEVLGMTKLGLVEVARRREKESIDKYYLMSCPCCDGEQTIKSVHYILD 399 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 I +EI+R+ +V + + E +K + ++ ++ + Sbjct: 400 SIEKEIMRISEHTVYKNIMVEFNDFIFEQIKEYYMDIIDKIGEKYNIKISLNANSTLKHN 459 Query: 483 QFDVVM 488 + +V+ Sbjct: 460 KTNVIF 465 >UniRef50_D0JBK5 Ribonuclease G n=2 Tax=Blattabacterium RepID=D0JBK5_BLASB Length = 510 Score = 406 bits (1045), Expect = e-112, Method: Composition-based stats. Identities = 139/507 (27%), Positives = 253/507 (49%), Gaps = 31/507 (6%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M EL++N E +A ++ G L E+H + ++ VG+IY G V ++L G+ AA +DI Sbjct: 1 MNKELIINAEEQEVEIALLEEGQLLELHRDVFNKKFSVGDIYLGIVKKILYGLNAAIIDI 60 Query: 61 GLDKAAFLHASD-----------IMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVK 109 G K AFLH +D I + + + +K+ I +++ GQ ++VQ+ K Sbjct: 61 GHSKGAFLHYNDLGFQINKILELISMNRKFFSNNFEKKENRNSIDKILHPGQRILVQISK 120 Query: 110 DPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFI 169 +P+ KG +LT+ I +P RYL+ +P + + +S++I++ E RL + + + G I Sbjct: 121 EPISNKGPKLTSKICIPGRYLILIPFSEKISISKKIKNAKEESRLLSYIRKIKPHEFGII 180 Query: 170 IRTAAEGVGEAELASDAAYLKRVWTKVMER-KKRPQTRYQLYGELALAQRVLRDFADAEL 228 IRTA+ E L + +L + W K ++ K P ++ E++ +LRD + + Sbjct: 181 IRTASHNKREEVLNEELIFLIKKWKKTLKNLIKLPPPPVRVLSEISKTSCLLRDTFNDDF 240 Query: 229 DRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKS 288 I ++ + + + S PE + +++Y G PIF+ + +E +IQ L R V L++ Sbjct: 241 KSIYCNNNFLCQEIHSYLSLIAPEKINIIKYYKGNIPIFEKYGIEKQIQIFLGRNVPLEN 300 Query: 289 GGYLIIDQTEAMTTVDINTG------AFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGG 342 G YLII+ TEA+ +D+N+G D I N+ A IARQLRLR++GG Sbjct: 301 GAYLIIEHTEALHVIDVNSGMNNHMKKNCTESERIDNILKINLLAATEIARQLRLRDMGG 360 Query: 343 IIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLC 402 II++DFIDM+ R+++ L++ + DR K + + GLV+ TR R R ++ + Sbjct: 361 IIVVDFIDMSEPIQRKQLYEHLKEKMKNDRAKHKILPPNKFGLVQFTRHRVRPELKVNIN 420 Query: 403 NECPTCHGRGTVKTVETVCYEIMRE---IVRVHHAYDSDRFLVYASPAVAEALKGEESHS 459 NE K+ ++ + I R + + + + ++ V+ LK Sbjct: 421 NE----------KSKDSPIHYIHRLEFVLESIIKNKNHQKIQLHIHSFVSAYLKKGFPSI 470 Query: 460 LAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + + K +++ + ++ + Sbjct: 471 QQKWLLKYKKWIQIIPRDSFGYTEYKI 497 >UniRef50_B1LBB5 Ribonuclease, Rne/Rng family n=6 Tax=Thermotogaceae RepID=B1LBB5_THESQ Length = 459 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 134/473 (28%), Positives = 247/473 (52%), Gaps = 27/473 (5%) Query: 16 VAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIMP 75 A +D G L+E+ + I G IY GR+ +++PG++AAFV IG + AFL S+I Sbjct: 3 YAVMDDGELEEVFFDEI--ETIAGKIYLGRIEKIVPGLEAAFVKIGKGRNAFLKLSEINE 60 Query: 76 HTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG 135 + V++GQ ++VQV KD G KG ++T I + R++V P Sbjct: 61 AY----------RKTVLKGQEVKEGQKILVQVKKDASGKKGPQVTPQIGIADRFVVIFPF 110 Query: 136 ASHVGVSQRIESESERERLKKVVAEYCDE-QGGFIIRTAAEGVGEAELASDAAYLKRVWT 194 +GVS++IE SER RL+ + + G I+RTAAEGV E E+ + W Sbjct: 111 KKVIGVSRKIEDASERRRLRTIAFSLRKKYGVGVIMRTAAEGVDEEEIIKNFERALEKWN 170 Query: 195 KVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMT 254 +V+++ +R + LY E ++++++ ++++D++ + R E L ++ + Sbjct: 171 QVLQKFRRSRKPKLLYEE-DPVEQIIKEKVNSKIDKLIYNDRSLLETLQKYLQ----NLP 225 Query: 255 SKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHR 314 K E +F+ F V +++ L R V LKSGG ++ID+TEA+T +D+N+ ++ Sbjct: 226 KKPEIEYVEGDLFEKFSVYERLKKLLSRTVPLKSGGNIVIDRTEALTVIDVNSESYTDAE 285 Query: 315 NLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVK 374 N ++ TN+EA + I RQL LRN+GGI++IDFI + ++L ++ +D + Sbjct: 286 NQEELALKTNMEAIEEIVRQLILRNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGTR 345 Query: 375 TSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHA 434 + GF+ LGL+E+TRKRT ++ +L CP C G G V + + + I ++ ++ Sbjct: 346 IEIFGFTNLGLLEITRKRTTRPLDTLLFTRCPVCSGTGKVLSQKILLKRIREDLKKL--- 402 Query: 435 YDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN-QEQFDV 486 D + + P ++ + + +++ ++ + + ++ +++ Sbjct: 403 KDFEEVTLKVHPNMSGYF---KREDIKKLQKEFKVKLNL--DYGWHDPNSYEI 450 >UniRef50_Q2GKZ9 Ribonuclease, Rne/Rng family n=10 Tax=Anaplasmataceae RepID=Q2GKZ9_ANAPZ Length = 636 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 119/404 (29%), Positives = 203/404 (50%), Gaps = 4/404 (0%) Query: 87 QFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPG--ASHVGVSQR 144 + + +++ Q LMVQ+ K+ G+K A +T I L RY +FMP + G+S+R Sbjct: 161 PHKMYKVQNVIKVDQKLMVQITKEERGSKCATFSTYIVLAGRYCIFMPNSGNKNSGISRR 220 Query: 145 IESESERERLKKVVAEYC-DEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRP 203 I+ R+ LK+ + E ++ G IIRTA EL D +YL+ W +V + Sbjct: 221 IDDCVHRKNLKEFLDEMKLPKEAGVIIRTAGSNRTHKELERDLSYLQSTWDEVKSSFESV 280 Query: 204 QTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGR 263 LY E + +R LRDF D + + V + + E+ ++ Y G Sbjct: 281 THPSLLYVEADVIKRTLRDFCDENVHDVVVAGSKAFGLVKEYAKSMF-GNRLRVRTYKGS 339 Query: 264 QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNT 323 PIF + V +I K+ L SGGYL+I TEA+ ++D+N+G G ++++T + T Sbjct: 340 IPIFTHYRVNAQILELYTDKIYLPSGGYLVITPTEALVSIDVNSGRMTGEDSIEETAYRT 399 Query: 324 NIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSAL 383 N+EA + IARQ+ LR L G+I+IDFIDM + R V + +A D+ K SA Sbjct: 400 NMEAVKEIARQVNLRGLSGLIVIDFIDMVKYRYCRAVEAEVREAFKGDKAKIQFGYISAF 459 Query: 384 GLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVY 443 GL+E++R+R ++SI +C C G G +++E++ I+R++ V + +V Sbjct: 460 GLMEISRQRVKQSILDSSTVQCHHCKGVGRTRSLESISASILRDVSYVANKNPEKILVVS 519 Query: 444 ASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVV 487 +V L + +AE+E +++ ++ +++ Sbjct: 520 VVSSVVSHLFNSKRRQIAEIESEFKVLIRLDVDDNLGISDYNIR 563 Score = 88.0 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 3 AELLVNV-TPSETRVAYIDGGILQEIHIEREARRGIVG-NIYKGRVSRVLPGMQAAFVDI 60 +L++ E RVA +D G + E E + R+ + G NIY V R+ P +QA F++ Sbjct: 11 KRILIDAVYLDEIRVAVLDEGKVVEFDQELKDRKQLRGGNIYFAVVRRIEPSLQAVFIEY 70 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQK 86 G+ K FL S+I + EE+ Sbjct: 71 GVGKHGFLPFSEIAVEHYQIPQEEKD 96 >UniRef50_A8RTZ4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTZ4_9CLOT Length = 385 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 128/404 (31%), Positives = 203/404 (50%), Gaps = 22/404 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M L+V + A + G + ++ +E + ++GNIY G+V +V+ + AAF+DI Sbjct: 1 MDK-LVVTRRGDKVCTAVVSDGKVSQLMLEPDTADSLLGNIYIGKVQKVVSNINAAFIDI 59 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G + + E ++ G +L+VQV KD + +K +T Sbjct: 60 GPGCTGYYSLQERWKP------------------ERLKTGDELVVQVSKDAVKSKAPVVT 101 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC--DEQGGFIIRTAAEGVG 178 ++ RY V G + +G S +I S + RL++++ + G I+RT A V Sbjct: 102 ERLSFTGRYCVLTVGKTGIGFSAKIRDASYKARLRELLECDLAGTKDLGIIVRTNAVTVE 161 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 E + + A L R W ++ LY L +RD L+ I D Sbjct: 162 ECAVREELAELMRTWQRLSAEAGCRVCYSCLYRALPGYIAAIRDSFGGTLEEIITDVPEY 221 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 + L + E +L Y P+ L+ +E ++AL + V LKSGGYL+I+ T Sbjct: 222 HRELKAYLEMCQKEDAGRLTLYEDSLLPLGKLYSLETAFEKALGKNVWLKSGGYLVIEPT 281 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EAMT +D+NTG + G + + DTI+ N+EA I RQ+RLRNL GIII+DFIDM E+ R Sbjct: 282 EAMTVIDVNTGKYSGRKKMQDTIYKINMEAADEIGRQIRLRNLSGIIIVDFIDMEREEDR 341 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 + +L L + +S+D VKT+V +AL LVE+TRK+ R+ + + Sbjct: 342 KALLAHLVEVVSRDPVKTTVVDMTALNLVELTRKKVRKPLHEQV 385 >UniRef50_A6LNV2 Ribonuclease, Rne/Rng family n=2 Tax=Thermosipho RepID=A6LNV2_THEM4 Length = 465 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 149/464 (32%), Positives = 245/464 (52%), Gaps = 20/464 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M L++N + A I+ L E+ + + GNIY GR+ RV+ + A FV+I Sbjct: 1 MEKILVLNSLDNGLHYAIIENNRLVELA--SDEEEKLTGNIYLGRIERVVNALDALFVNI 58 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G K FL D+ ++ + G ++VQV KDP+G KG +LT Sbjct: 59 GTKKNGFLRFKDVPEKYFEFFSLKK-----------LENGGKILVQVKKDPVGDKGPQLT 107 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE-QGGFIIRTAAEGVGE 179 ++I++ RY+V P + VGVS++IE E ER+RL + + ++ G I+RTA+EG+ E Sbjct: 108 SNISVAGRYVVLFPFSEVVGVSKKIEDEDERKRLYDLAGRFSEKYNLGVIMRTASEGLDE 167 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + S+ L + K++E KR + LY E L +LR+ ++ I ++ Sbjct: 168 VHIMSEIDILSKKINKIIESFKRKRKAQVLYKEENLLDYILREKLTKDVKLIITNNFKHV 227 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 E + ++ + K+E G FD D+ + L+RKV L SGG +IID+ EA Sbjct: 228 ELIRKYLKIF--SKRPKIEIIDGDS--FDYMDIYKYFRELLKRKVLLPSGGEIIIDKAEA 283 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T +D+N+ FV +N +T F TN EA I RQLRLRN+GGII+IDFIDM++++ ++ Sbjct: 284 LTVIDVNSKHFVKGKNQQETAFQTNKEAVSEIFRQLRLRNIGGIILIDFIDMDSDEKKKL 343 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 +L +++ + KD+ K + GF+ LGL+EM+RKRT S CP C+G G + + + Sbjct: 344 ILKQIDEEIKKDKSKIEIFGFTRLGLLEMSRKRTVRSFFENYITICPICNGTGFIVSPKM 403 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEV 463 ++ ++I D+ ++ P + L+ E ++ Sbjct: 404 TLKKLYQKIEEAP--EDAKEVIIKLHPYFKDKLEKSELKKRKDI 445 >UniRef50_Q8GZQ4 Endoribonuclease n=8 Tax=core eudicotyledons RepID=Q8GZQ4_ARATH Length = 996 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 234/472 (49%), Gaps = 31/472 (6%) Query: 44 GRVSRVLPGMQAAFVDIGLDKAAFLHA-----SDIMPHTECVAGEEQKQFTVRDISELVR 98 G V+ + A V++G + + +D + VA + + + VR Sbjct: 479 GLVNGTVVNHGA--VEVGSE-NGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVR 535 Query: 99 QGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVV 158 +G ++VQVVK+ LGTKG LT L SR+ V + +GVS++I ER RLK + Sbjct: 536 KGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISG-VERTRLKVIA 594 Query: 159 AEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQT----------RYQ 208 + G +RT A G EL D L W + + K Sbjct: 595 KTLQPQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPAL 654 Query: 209 LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFD 268 L+ + V++D+ + +++++ VDS TY + + + P++ +++E + P+FD Sbjct: 655 LHRAMGQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFD 714 Query: 269 LFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGA--FVGHRNLDDTIFNTNIE 326 L+++E EI+ L ++V L +GG L+I+QTEA+ ++D+N G F + + I N+ Sbjct: 715 LYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLA 774 Query: 327 ATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLV 386 A + IAR++RLR++GGII++DFIDM +E ++R V +++A+ +DR V+ S GL+ Sbjct: 775 AARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLM 834 Query: 387 EMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSD-------- 438 E+TRKR R S+ ++ C CH G V+ +ET +I +EI R + Sbjct: 835 EITRKRVRPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLAKMEKRGDLENPKS 894 Query: 439 --RFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVM 488 RF++ ++ L + LA + + + +++ + + F+V Sbjct: 895 WPRFILRVDSHMSSFLTTGKRTRLAILSSSLKVWILLKVARHFTRGTFEVKP 946 Score = 74.9 bits (183), Expect = 7e-12, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 1/101 (0%) Query: 2 TAELLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 +L+N + R+A ++GG L E+ +E ++Y G +++ +P M AFV+I Sbjct: 328 ATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNI 387 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQ 101 G + +F+ + + D S ++ Sbjct: 388 GSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMND 428 >UniRef50_A9BIJ0 RNA binding S1 domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIJ0_PETMO Length = 471 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 133/486 (27%), Positives = 256/486 (52%), Gaps = 23/486 (4%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +LV+ E R+A ++ L EI E +G I+ G + +P ++A FV+IG Sbjct: 4 EKTMLVSKALEEIRIAILEEDKLSEIFFEDFETDRNIGKIFLGIIENRVPSLEAFFVNIG 63 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 L K FL D++ + G ++VQV KD KG +L+ Sbjct: 64 LGKNGFLRYRDVLDD-----------------PNQYKVGDKILVQVRKDGGTRKGPQLSM 106 Query: 122 DITLPSRYLVFMPG-ASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I+LP +YLV++P +G+S++I E ER RL++V + + I RT +EG+ E Sbjct: 107 QISLPGKYLVYIPNSNESIGISRKILQEKERIRLRQVAKKILIDNESIIFRTNSEGIDEK 166 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 E+ + + +++++ +++R + LY E + +LR+ D++ +I D R + Sbjct: 167 EVEVELSEMRKMYNSILQRFHSQKNPGVLYEESDFLEYILRERLDSKTKKIITDDRQIFR 226 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 L + + E+ K+E G +F + ++ ++++ +K+EL GG + +D+TEA+ Sbjct: 227 KLKKSLKGF--ELKPKVEFVRG--DVFQIHNIYHQMEEIFTKKIELSGGGTITVDRTEAL 282 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+++ + +N+++T F TN+EA + IARQL+LRN+GG+I++DFIDM + H++ + Sbjct: 283 TAIDVDSAGNLEGKNIEETSFITNMEAAKEIARQLKLRNIGGMIVVDFIDMKDSSHKKTI 342 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 ++ L++ KD+ K ++ GF+ +GL+E+ RKRT + ++ + ++CP CHG G + V Sbjct: 343 INILKEESKKDKSKVTILGFTNMGLLEIIRKRTTQPLDTNVYSQCPLCHGTGKIIAPSLV 402 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 +++E++ ++ V A E+E + +++V N Sbjct: 403 HGRLIKELLSSAKEIKKEKIKVIEINAFHNLSGYLTPALTEELEKQLNVKLEVSFN-WLN 461 Query: 481 QEQFDV 486 +++ Sbjct: 462 PNSYNI 467 >UniRef50_C5EUP6 Ribonuclease G n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EUP6_9FIRM Length = 393 Score = 399 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 129/402 (32%), Positives = 203/402 (50%), Gaps = 15/402 (3%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 L+V A + G + ++ +E E ++ NIY G+V +V+ + AAFVDIG Sbjct: 3 RLIVTQLNDRVCTAAVSGSRITQLMMEPEDSSSLLNNIYIGKVQKVVGNINAAFVDIGGG 62 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 + + + ++ V + ++ G +++VQV +D + TK LT + Sbjct: 63 RTGYYSLDE-----------NKEHLFVSPSTGKLKAGDEIVVQVSRDAVKTKAPVLTGKL 111 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQ---GGFIIRTAAEGVGEA 180 RY V G + VG S +I + R++ ++ E E G I+RT G + Sbjct: 112 AFTGRYCVLTAGKTGVGFSNKIGDNKYKARVRSMLNEALAEDGDRFGIIVRTNGAGATDE 171 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L + LK ++ K+ + +Y L +RD LD I D YE Sbjct: 172 VLLQEYRQLKDMYLKLSKEASCRTCYSCIYRALPGYIAAIRDSYSGTLDGIVTDIPAYYE 231 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 L ++ +Y E KL Y + P+ L+ +++ ++ AL + V LKSGGYL+I+ TEA Sbjct: 232 ELKDYLEKYQAEDADKLTLYEDKLLPLSKLYSLDSALEHALNKHVWLKSGGYLVIEPTEA 291 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 M +D+NTG + G + + DTI N+EA I RQLRLRNL GII+IDFIDM E+ R Sbjct: 292 MVVIDVNTGKYSGKKKMQDTICRINMEAADEIGRQLRLRNLSGIILIDFIDMEREEDREM 351 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 ++ L +SKD VKT+V + L LVE+TRK+ R+ + + Sbjct: 352 LMRHLGDVVSKDPVKTTVVDMTRLNLVEVTRKKVRKPLYEQI 393 >UniRef50_P51211 Ribonuclease E homolog n=2 Tax=Porphyra RepID=RNE_PORPU Length = 511 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 132/459 (28%), Positives = 231/459 (50%), Gaps = 30/459 (6%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 MT ++++ + A + G +Q++ + V +IY G V ++ G+ AAFVD+ Sbjct: 1 MTNTIVISCLHN--IAAILYCGQIQKLVV--ANAHYQVSDIYLGTVDKIFSGINAAFVDL 56 Query: 61 GLDK-AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 G ++ + F+H SD P +K++ + +I+ ++ Q ++VQ++K+P KG RL Sbjct: 57 GKNEYSGFIHISDTGPL--------KKKYYINNITNILTIRQKILVQIIKEPTLNKGPRL 108 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T +ITL RY+V MP + + +S++I E ER LK + G + R +A G+ E Sbjct: 109 TANITLSGRYIVLMPFSQAICISRKIYDEDERHYLKALAILIKPPTMGLLFRPSAIGIDE 168 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + S+ LK W + + LY + + ++V+RDF D I +DS L Sbjct: 169 EIILSELTNLKEQWYFIQKSAINNCAPVLLYKDEDIVKKVIRDFYDNNTKNIVIDSNLGL 228 Query: 240 EALLEFTSEYIPEMT---SKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 + L + + + + L+ Y+ + I D F + I RAL KV+L GGY+ I+ Sbjct: 229 KQLNYYINTWQCNFSSTIPSLQLYSSNKCILDTFRINQAISRALIPKVDLILGGYMFIET 288 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 EA T +D+N+G+F + +T+ TN A IA QL++RN+ G+IIIDFIDM ++ Sbjct: 289 LEAFTIIDVNSGSFNNSTSARETVLKTNCSAATEIAYQLKIRNIAGVIIIDFIDMESQRD 348 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKT 416 + ++L ++ LS D K + S LGLVE+TR+R +S+ ++ + Sbjct: 349 QLQLLEHFDKELSLDDAKPQIVQLSELGLVELTRRRKGKSLYELV--------------S 394 Query: 417 VETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGE 455 ++ + ++ ++ S S +V L E Sbjct: 395 NDSNYFHFFIQLEQLDSIKPSSYKSKRLSSSVKSWLFSE 433 >UniRef50_A5I670 Ribonuclease G n=12 Tax=Clostridium RepID=A5I670_CLOBH Length = 479 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 138/487 (28%), Positives = 247/487 (50%), Gaps = 24/487 (4%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 E+ + R+ + ++E+ IE + + VG IY G V ++P +++AFVDIG Sbjct: 2 KEIFIERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDIGW 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +K A+L+ + + +++G ++V+VVK+ L KG ++T Sbjct: 62 NKNAYLYLDK------------------KFNNTHIKKGDYILVEVVKEDLNKKGPKVTNA 103 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 IT+P RY V + + S +I+ E R ++ + + G +IRT A + Sbjct: 104 ITIPGRYTVLQILNNEITFSHKIKDEKIRTEIQNNI--VKPKDVGILIRTEAINTSIENI 161 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 ++ L ++++ ++E+ K L+ + ++LRD + + +I ++ R Y + Sbjct: 162 NNEIRRLYKIYSSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYV 221 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 EF EY E KL+ Y G + + D + +E EI +KV L GGY+IID+TEAM Sbjct: 222 SEFLKEYG-ENNIKLDIYEGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMYV 280 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 VD+N+G V +++ TIF TN+EA I Q+ LRNL GII+IDFIDM+NE+ + +VL Sbjct: 281 VDVNSGKNVKGNSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVLD 340 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L+Q L +D+ K+ V F+ L LV++ RKR ++I + C C G+G++ + + Sbjct: 341 KLKQGLKRDKNKSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMKL 400 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 I EI+ + + + + + + + ++E+E + I + + Sbjct: 401 LIRNEIINILNMREIKDIYIELNKRYKDYIDKNRIQFISEIEALEK---NIYINYIDAEN 457 Query: 483 QFDVVMM 489 Q+ V + Sbjct: 458 QYKVEPL 464 >UniRef50_A9KMH0 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMH0_CLOPH Length = 404 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 131/406 (32%), Positives = 220/406 (54%), Gaps = 12/406 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ +L+V A +G + +++++RE +GNIY G+V ++ + AAFV+I Sbjct: 1 MSGKLIVTKMDDNIVTALYEGNQMIQVNVDREEEVSSLGNIYIGKVKNIVKNINAAFVEI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 K +L +D++ FT S+ V G +L+VQV+K+ + TK +T Sbjct: 61 SDRKMCYLPLADVVNPI----------FTHAKSSDKVNIGDELVVQVIKEDIKTKAPVVT 110 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T I +Y+V M G +G+S +I SE +R+RL+ +V+ + EQ GF++RT A + Sbjct: 111 TSIAFTGKYVVLMHGTKTIGISSKIGSEQKRKRLRSLVSPFLGEQYGFVLRTNAVEAEDN 170 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 + + LK+ + +++ LY L +RD +L+ I D Y+ Sbjct: 171 LIVEEIEQLKKQYDRILTYGIYRNRFSLLYKTLQPFLCAIRDGFAKDLEAIITDDLSLYD 230 Query: 241 ALLEFTSEYIPEMTSKLEHYTGR-QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + E+ +E+ E KL Y + + L+ +E ++ RAL KV L GG L+I TEA Sbjct: 231 EIKEYLTEHQREDIGKLTFYQDKLLALSKLYSIETKLSRALREKVWLPCGGSLVIQPTEA 290 Query: 300 MTTVDINTGAF-VGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 +T +D+NTG +N+ +T N+EA + IA Q+ LRNL GIII+DFIDM +ED + Sbjct: 291 LTVIDVNTGKAVSKKKNVQETFLKVNLEAAEEIAAQICLRNLSGIIIVDFIDMISEDAKT 350 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNE 404 ++L ++ L KD +KT++ +AL LVE+TRK+ R+ + + + Sbjct: 351 QLLRVFDEYLRKDPIKTTLVDMTALNLVEITRKKVRKPLHEQMKHT 396 >UniRef50_C0D9K4 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D9K4_9CLOT Length = 400 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 128/406 (31%), Positives = 199/406 (49%), Gaps = 17/406 (4%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M L++ + A G + +E E ++ NIY G+V +V+ + AAFV+I Sbjct: 1 MDK-LVITRWRDKVLTAVFSGRKPLALTLEPEQGGSLLNNIYIGKVQKVVKNISAAFVEI 59 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G + +L P G + + G +L++QV KD + TK +T Sbjct: 60 GGGRVGYLPLEGTCPRVLNRPGA-----------KNLAPGDELIIQVEKDAVKTKAPVVT 108 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC----DEQGGFIIRTAAEG 176 ++ RY V G V S R+ +S + R++ V+ E E G I+RT A Sbjct: 109 CRLSFAGRYCVLTAGKPGVNFSSRLTDQSFKRRVRPVLEEAVRARGHEACGLIVRTNAGE 168 Query: 177 VGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSR 236 GE +L ++ A L + V + LY L +RD L+ + D Sbjct: 169 AGEEQLLAELAVLFDQYESVQNQGNHRVCYSCLYRSLPGYMASVRDSLGGSLEAVLTDQA 228 Query: 237 LTYEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIID 295 YE L + + + KL Y + L+ ++ ++ AL ++V LKSGGYL+I+ Sbjct: 229 DVYEELKHYLALNQQKDLEKLSFYDDPLLSLGALYSLDKVMEEALGKRVWLKSGGYLVIE 288 Query: 296 QTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 TEAM +D+NTG + G + L +TI N+EA IA Q+RLRNL GII++DFIDM + Sbjct: 289 PTEAMVVIDVNTGKYSGKKTLQETILKINLEAAVEIAHQIRLRNLSGIILVDFIDMEPGE 348 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 +R +L +L +A+S D VKT+V + L LVEMTRK+ R + + Sbjct: 349 NREILLKALSEAVSADPVKTAVVDMTKLNLVEMTRKKVRRPLHEQV 394 >UniRef50_A5ZQK1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZQK1_9FIRM Length = 396 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 119/403 (29%), Positives = 195/403 (48%), Gaps = 15/403 (3%) Query: 5 LLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDK 64 +L+N P T A + + E+ +E ++ + NIY G+V + +QAAFV + Sbjct: 1 MLLNEVPC-TVCAIVQDQKVIELRLEPSGKKNTLNNIYVGQVENIAANIQAAFVRLSDSV 59 Query: 65 AAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDIT 124 +L + R + +R G L+VQ+ ++ + K LT ++ Sbjct: 60 NGYLPLNQCTNAIYTDG---------RKTDQPLRPGDQLLVQINREAMKGKLPALTANLN 110 Query: 125 LPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE---YCDEQGGFIIRTAAEGVGEAE 181 +YLV G +G S ++ S+ E L K + E + + G I RT A + E Sbjct: 111 FSGKYLVLTTGNRKIGFSNKL-SKEESSLLNKWLEEERSLPEREYGIIARTNAAEASKEE 169 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 + LK+ + KV + LY +RD +LD I D +E Sbjct: 170 FFHELEMLKKQYEKVAVHGRNRTCYSLLYEAEPFYLAAVRDVYTRDLDEIVTDIPEIHEK 229 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + SE+ P+ L+ Y + P++ L+ +E I K+ LKSGG+L+I QTEA Sbjct: 230 IFAYLSEFQPDKLEILKLYQDKLLPLYKLYSLEGAIDEVCHEKIWLKSGGFLVIQQTEAF 289 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 ++D+N+G + G + ++T N+EA IARQ+RLRNL GII++DFI+M N DH+ + Sbjct: 290 VSIDVNSGKYTGKKKAEETYRKINLEAAAEIARQIRLRNLSGIILVDFINMENPDHQDEL 349 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 H L++ L KD VK + L ++EMTR++ R + L Sbjct: 350 FHVLQKYLRKDPVKCKAIDITPLHILEMTRQKVRRPLIEDLRE 392 >UniRef50_Q1V2D3 Ribonuclease E/G n=5 Tax=Bacteria RepID=Q1V2D3_PELUB Length = 619 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 106/414 (25%), Positives = 209/414 (50%), Gaps = 13/414 (3%) Query: 75 PHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMP 134 P E + + I E+++ Q +++QV+KD G KGA L+T I++ +Y+V MP Sbjct: 160 PVLHGRKPETRFRSKRYKIQEVIKPNQVILIQVLKDERGQKGAALSTFISIAGKYIVLMP 219 Query: 135 GAS-HVGVSQRIESESERERLKKVVAEYC-DEQGGFIIRTAAEGVGEAELASDAAYLKRV 192 G+S++I + ER++++ ++ + ++ G I+RTA + ++ D L + Sbjct: 220 NTPKGGGISRKIFNPGERKKIRTILNDIVIPKEMGLIVRTAGSNKTKNDIDHDLQTLIKT 279 Query: 193 WTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPE 252 W ++ E ++ E + +R LRD D + I ++ Y+ F +P Sbjct: 280 WNEIKENALNSIAPSLIHQESDIIKRTLRDMYDESTNSIVIEGNEGYKKAQNFMKLMMPS 339 Query: 253 MTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVG 312 K++ Y + P+F ++E ++ + + +++LKSGGYL+I+ TEA+ ++DIN+G+ + Sbjct: 340 HVKKIKKYREKVPLFFKENIEEKLNQIYDSEIKLKSGGYLVINPTEALVSIDINSGSSIK 399 Query: 313 HRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDR 372 +N++ T +TN+EA + I+RQ+++R+L G+IIIDFIDM + +RR V L++ DR Sbjct: 400 QKNVESTALDTNLEAAEEISRQIKIRDLSGLIIIDFIDMLSFGNRRLVERKLKEQCRTDR 459 Query: 373 VKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVH 432 + + S GL+EM+R+R RES T E+ +I++ + Sbjct: 460 ARIQIGRISTFGLLEMSRQRLRESAVKWKVT-----------LTDESFAMKILKLVEVKA 508 Query: 433 HAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 + + +++ +K L E ++ + + ++ + Sbjct: 509 VLTKAKFVELKICEKISDFMKENFIEDLKYFEEKNLIKIDIIADNSLIIPEYII 562 Score = 79.1 bits (194), Expect = 3e-13, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 1 MTAELLVNVT-PSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVD 59 M L ++ + P+ETRV G +++ E I NIY G+VSRV P +QAAF+D Sbjct: 1 MEKNLYIDASHPNETRVVLKSGENIEDYEYEGLKNNLIKNNIYLGKVSRVEPSLQAAFID 60 Query: 60 IGLDKAAFLHASDIMPHTECVAGEE 84 G D+ FL +DI + + Sbjct: 61 FGRDRHGFLSFNDIQSDYYQIPQSD 85 >UniRef50_C3WSU7 Ribonuclease G n=6 Tax=Fusobacterium RepID=C3WSU7_9FUSO Length = 458 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 136/467 (29%), Positives = 249/467 (53%), Gaps = 28/467 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M L+++ + ET++A ++ L E++IER ++ I GNIYKG+V +L + FVDI Sbjct: 1 MKKYLILSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL+K AFL E +K + +I L+VQ +P KGA+LT Sbjct: 61 GLEKNAFLSF------------ENKKDISKYNID------DKLIVQAETEPRDEKGAKLT 102 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 D ++ LV +P + ++ +S++I+ E RLK + + G I+RT +EG E Sbjct: 103 LDYSINGENLVLLPKSKNLSISKKIKDIEEVNRLKNI---FLSTDNGLILRTNSEGKSEE 159 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L + L+ + ++ + ++ LY ++ ++V+ D ++ +D ++ Sbjct: 160 NLLEEYRRLENIDNQINKDFEKINV-GLLYDVNSILKKVVA-LFDDSTEKFIIDDEHIFK 217 Query: 241 ALLEFTSEY-IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + E ++ KL Y + IF+ +++ ++I+RAL+RKV L SG Y+II++TEA Sbjct: 218 EIKYLLEEIGKKDLIKKLRKYFKDEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEA 277 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++D+NTG G++ + IF TN+EAT+ IARQ++LRNL GIIIIDFIDM +++R Sbjct: 278 LISIDVNTGQNTGNKTSQEIIFQTNLEATKEIARQIKLRNLAGIIIIDFIDMKKFSNKKR 337 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 +L ++ LSKD+V+ + ++ LGL++ TRKR + + +C C G G + + Sbjct: 338 ILEKFKKYLSKDKVEINSVEYTNLGLIQFTRKRQGKELALYYREKCQYCEGIGYFLSKDR 397 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVA----EALKGEESHSLAE 462 + ++ ++ + D + ++ + + + + + + Sbjct: 398 IILNLLEDLNNQIKSQDIKKIVIRTKKDIIKELNKYIDNNKIEYIED 444 >UniRef50_C0ERY0 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERY0_9FIRM Length = 403 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 124/403 (30%), Positives = 208/403 (51%), Gaps = 12/403 (2%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 +L++ Y G+ E++ E + ++ I+GNIY RV RV G+ AF++IG Sbjct: 5 KNKLVITEKEGVICYGYFQDGVPTELYCEPKEQQSILGNIYAARVERVAEGIHGAFLEIG 64 Query: 62 LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTT 121 ++ + S P E++ + G ++VQ+ KD + TK T Sbjct: 65 DNQKCYYSLSAEQPVKLSPGHEDK-----------LYGGDIILVQITKDAVKTKLPVGTG 113 Query: 122 DITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 +I+L +Y VF G+S++I + ERERL+ ++ +Y E+ G I+RT A GV E Sbjct: 114 NISLDGKYFVFTLTDKRTGISKKIRNTVERERLETLLKKYTREEYGIIVRTNAAGVSEET 173 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 L + L+ + ++M + K + LY E + ++ LD I D + Sbjct: 174 LTKELELLQLRYEELMRKAKIATGKTLLYREPPHYITLGKELPAKALDEILTDHAEVFTE 233 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 L E+ + T+K+ Y +++L+ + + A + + LKSG L+I+ TEAMT Sbjct: 234 LKEYYKQTSESDTTKISFYEDTYSLYNLYRFAHYYEEAYGKYIWLKSGASLVIEHTEAMT 293 Query: 302 TVDINTGAFVGHRNLDDT-IFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+NTG+ + + +DT + N EA + IARQLRLRN+ GII+IDFI+M + + ++ Sbjct: 294 VIDVNTGSVLKKKKQEDTLFYQINREAAKEIARQLRLRNISGIIMIDFINMKDTAQKEKL 353 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 L L+ KDRV +V +AL LVEMTR + R+ + + + Sbjct: 354 LSLLDSECKKDRVHCNVIDMTALNLVEMTRSKVRKPLHEQIRS 396 >UniRef50_D0MD03 Ribonuclease, Rne/Rng family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD03_RHOM4 Length = 604 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 115/399 (28%), Positives = 203/399 (50%), Gaps = 7/399 (1%) Query: 94 SELVRQGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERER 153 L+++ Q L+V+++K+P+ +KG+R++TDI+L R+LV +P A++V VS++I S ER R Sbjct: 178 ETLLKRDQPLLVKIIKEPISSKGSRVSTDISLAGRFLVLVPFANYVAVSKKITSYKERRR 237 Query: 154 LKKVVAEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMER-KKRPQTRYQLYGE 212 L+ + E G I+RT AEG L +D L W ++ ++ + P+ L+ + Sbjct: 238 LRALARSLLPEGFGVIVRTVAEGQTAKALDTDLRLLLEKWERIEKKLAEHPKPPVLLHED 297 Query: 213 LALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDV 272 + + V+RD + RI VD+ + + + P ++ Y G++ IF + Sbjct: 298 VNMVSSVIRDLFSEDCTRILVDNPRLHRNIRSYVQAVAPHKVEVVQLYRGKEHIFKATGI 357 Query: 273 ENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIA 332 ++ +A E +V+L SGGYL I+ TEAM +D+N+G + ++ N+EA + IA Sbjct: 358 AEQVAQAFESRVDLPSGGYLYIEHTEAMHVIDVNSGRAGRGLSQEENSLRVNLEAARVIA 417 Query: 333 RQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR 392 +Q+R+R+LGGII+IDFID+ +E ++++V L++ KDR T + S GLV++TR+R Sbjct: 418 QQVRVRDLGGIIVIDFIDLKDEKNKKKVYDELKKEFRKDRAVTKILPMSDFGLVQITRQR 477 Query: 393 TRESIEHVLCNECPTCHGRGTV------KTVETVCYEIMREIVRVHHAYDSDRFLVYASP 446 R S+ + T E + + R + HA + P Sbjct: 478 LRPSLTTTFDKMAERLAREKILPPAPSQPTPEALLEAMERWLQAYRHAGGRRNVTLRVHP 537 Query: 447 AVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFD 485 A L + +V+++ +P F Sbjct: 538 FTAAYLTRRVPTYPTRWLLKHLVRVRLESDPNQPPLSFR 576 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 36/78 (46%), Positives = 48/78 (61%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M E+++N +TR+A ++ G L E +IE +GNIY RV RV+P +QAAFVDI Sbjct: 1 MAKEIIINAEKDQTRIAIVEDGTLAEFYIEDPEHERTIGNIYLARVCRVMPSIQAAFVDI 60 Query: 61 GLDKAAFLHASDIMPHTE 78 G + AFLH SDI P Sbjct: 61 GQQQDAFLHFSDIAPSLP 78 >UniRef50_Q97JL8 Ribonucleases G/E family protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JL8_CLOAB Length = 481 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 126/487 (25%), Positives = 242/487 (49%), Gaps = 27/487 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++ + +VA +D G +E IE E G IYKG V ++P ++ AFVDIG Sbjct: 2 KKIFIERCTDFLKVAVLDNGEFKECFIEDEKEEIYSGAIYKGVVKNIVPAIKCAFVDIGN 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K +L+ + +++G +++V++VK+ +G+KG +++ Sbjct: 62 GKNGYLYMDSKFNNVN------------------IKKGDEMLVEIVKESIGSKGPKVSNA 103 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 IT+P RY V + + + +S++I + LK+ V + E G +IRT A+ V ++ Sbjct: 104 ITIPGRYSVIITLNTDINISKKISDSKYIKMLKENVKK--PEDVGVMIRTNAQNVSLEDI 161 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDR--IRVDSRLTYE 240 ++ L + + ++ K +Y +R++RD + ++ + V+ + ++ Sbjct: 162 NNEIENLYETYVGIRKKAKYSNKVGIVYNAGGTIERIMRD--NEDVADLTVVVNDKKDFD 219 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + +M L+ + + + + E EI + ++RKV LK GGYLIID TEAM Sbjct: 220 NIQNYI-LTKKDMKCNLKLHDSNISLMEYYGFEREIVKLIDRKVMLKCGGYLIIDNTEAM 278 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 +D+N+G + + NL T F TN+EA + ARQ+ LRNL GII+IDFID+ +E+ + ++ Sbjct: 279 HVIDVNSGKNIKNSNLARTAFLTNMEAAKEAARQIILRNLSGIIVIDFIDITDEEAKSKI 338 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 ++ L+Q KD+ KT V F+ L +V++ R+R +SI L +C +C G G E + Sbjct: 339 VNVLKQGFLKDKNKTIVYPFTELNIVQIARRRRGKSIYDYLEEKCDSCIGSGRKLNFEYM 398 Query: 421 CYEIMREIVR-VHHAYDSDRFLVYASPAVAEALKGEESHSLAEV-EIFVGKQVKVQIEPL 478 + +++R + + + + + + ++ + ++ + +P Sbjct: 399 KNLMRNKVIRFLEEHEKAKSIYIEMDKRYENKISLDVEGFIKDIGADNLSVYIEYKSKPD 458 Query: 479 YNQEQFD 485 + F Sbjct: 459 VFKINFR 465 >UniRef50_A8VZD2 Alanine racemase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZD2_9BACI Length = 473 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 149/475 (31%), Positives = 242/475 (50%), Gaps = 16/475 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M + V+ +E R A I+ G + E + R G I G+++ + GM AAF+DI Sbjct: 1 MKRTIAVHTGLTEARGAVIEDGRVTEWLMSPGPTRLETGMIITGQITDIHDGMDAAFIDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK FLH S++ + IS V +G L+++V++ TKG +LT Sbjct: 61 GSDKRGFLHKSELNRPDKGEDV---------PISRQVTKGAYLLLEVLRPGTDTKGPKLT 111 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 I+ +Y V+MP + +V VS+++ SES RE + E E G IIRT AE Sbjct: 112 EKISFSGKYAVYMPFSRYVAVSKKMSSESVRESWRAFGKERLQEDEGLIIRTNAEEEDPE 171 Query: 181 ELASDAAYLKRVWTKVMERK-KRPQTRYQLYGELA-LAQRVLRDFADAELDRIRVDSRLT 238 + + L+ +V +P ++ + + LA R+ RDF E + D R Sbjct: 172 VIDREIDLLRAKADEVKRAFLDQPIKAGAVHVDPSALAARISRDFLADEDTEVICDGRQL 231 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 YE L+ + + + + + L++ E + + + V L +GG L+I++TE Sbjct: 232 YEELVREREVMP--LGASVSYTREN--VARLYEFERMMMQTVRPYVWLPNGGSLLIEETE 287 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 AMT +D+N+G F G NL T + TN++A + IAR+LRLR + GII+IDFIDM+ +D R+ Sbjct: 288 AMTVIDVNSGRFTGKENLRKTAYQTNLQAAKVIARELRLREVSGIILIDFIDMDTDDDRK 347 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVE 418 VL +L Q +DR + +V GF++LGLVEMTRK++R I ++ C C G G V T Sbjct: 348 DVLKTLRQGCKQDRTRVNVIGFTSLGLVEMTRKKSRMPIGEIMKEPCGCCGGTGRVDTAN 407 Query: 419 TVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKV 473 Y + + + ++ + + + EAL + + ++ +G +V V Sbjct: 408 EQLYRVSEAL-QEAVQGKTESLWLDLNVRLYEALTSNQEDWASAIKARIGVRVYV 461 >UniRef50_C6LLP4 Cytoplasmic axial filament protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLP4_9FIRM Length = 408 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 128/408 (31%), Positives = 210/408 (51%), Gaps = 12/408 (2%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +L++ A G E+ +RE + GNIY G+V V+ +QAAFV+I Sbjct: 1 MKNKLIITRLWDGIATALYLDGRAAELSFDRETETPLPGNIYIGKVKNVVKNIQAAFVEI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 + +L S+ FT + S + G +L+VQ+ ++ + TK +T Sbjct: 61 EDGISCYLPLSEKAEPY----------FTNKTNSPRLVAGDELLVQIAREGVKTKAPTVT 110 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 +I+ P +YLV G + G+S ++ ++ERERL+++ + G+I+RT A E Sbjct: 111 ANISFPGKYLVLTSGKTQTGISAKLA-KAERERLQQIAGRLPEGNFGWILRTNAAEAEEE 169 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 E+ +A L + + + + + LY A L+D E + I D + Y+ Sbjct: 170 EILREAETLAKRFEDICRTARYRTCKSCLYRSPAAWLAHLKDIRQTECEEILTDDQGLYD 229 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 L + +E +P KL Y R P++ L+ +E + AL +V LKSG YL+I TEA Sbjct: 230 RLQAYLAENLPADAEKLSFYEDRLLPLYKLYSLEGAFEEALRERVWLKSGAYLVIQPTEA 289 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 +T +D+NTG + +T N+EA + ARQ+RLRNL GII+IDFI+M++++ +R Sbjct: 290 LTAIDVNTGKCERGKKASETFRKINLEAAREAARQIRLRNLSGIILIDFINMDSKEEEQR 349 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPT 407 +L +L+ L KD VK + LGL E+TRKR ++ + + P Sbjct: 350 LLAALDAELQKDPVKAYAVDITPLGLAEVTRKRVQKPLAEKMRQSVPQ 397 >UniRef50_Q3AF57 Ribonuclease, Rne/Rng family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AF57_CARHZ Length = 392 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 130/414 (31%), Positives = 215/414 (51%), Gaps = 30/414 (7%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 MT L+ + P A + G + +R + + +IY G+V +V+PG+QAAFV++ Sbjct: 1 MTKTLVFHRQPEYDLAAVMVDGSPFSLFAKRRDEQTQINDIYLGKVEKVVPGLQAAFVNL 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL K +L +I V+ G ++V+VVK+P KGA+L+ Sbjct: 61 GLAKNGYLPLDEIN----------------------VKPGDVVLVRVVKNPTAQKGAKLS 98 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T I+LP R LV+ P G+S+++ E +RE +V+ GFI+RT A E Sbjct: 99 TVISLPGRNLVYFPQKEMKGISRKLT-EDKREYYHRVLENLNLPG-GFIVRTLAG--EEE 154 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 +L +A L W ++ER K Q LY E L LR+ D + + VD E Sbjct: 155 DLLQEAKRLYEEWQGILERSKTAQAPALLYKEDDLFTWCLRELLDKDFTALYVDDFELLE 214 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +F + + + + + F++ +++ +V LK+GG L+I++TEA+ Sbjct: 215 IGQKFRERFRVLLPPIYK----SFNVMEEFNLIRTMEKLTRERVWLKNGGILVIEKTEAL 270 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+N+G F G ++L +T F N+EA + IA+Q+RLRN+GGII++DFI + E+ + Sbjct: 271 TAIDVNSGKFTGKKDLKETAFKINLEAAREIAKQIRLRNIGGIIVVDFISLLEEERWEEI 330 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTV 414 L +E+ +D+ K + G + GLVE+ R++ SI + +EC C G G + Sbjct: 331 LRVMEEEFLRDKAKVKITGKTPSGLVEIARQKIGLSIGELFTHECSVCQGTGRI 384 >UniRef50_C6J9J6 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9J6_9FIRM Length = 398 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 115/405 (28%), Positives = 201/405 (49%), Gaps = 15/405 (3%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++ + P AY + G + E+ E + +GNIY G++ + + AAFV I Sbjct: 4 TQMNIRQIPCYV-CAYEEDGKVMELRFEPVGEKSSLGNIYVGQIENIAANIGAAFVQISA 62 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + +L SD +V+ ++ G +++VQ+ ++ + K +TT+ Sbjct: 63 GEKCYLQLSDAPNAIYA---------SVKKGDRPLKAGDEILVQISREAMKGKLPAVTTN 113 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYC---DEQGGFIIRTAAEGVGE 179 + +YLV G G+S ++ ++ +R R+ K + D++ G I+RT A + Sbjct: 114 LNFTGKYLVLTTGDKKFGLSSKLSND-DRSRISKWMEAEVNRPDKEFGIIVRTNAADASK 172 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 E+ + YLK ++ K + +Y +RD L+ I D Sbjct: 173 EEILKELEYLKGLYHKAAVDGRSRTCFSCVYRTEPFYISAVRDANSRNLEEIITDIPEIS 232 Query: 240 EALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 + ++ + PE KL Y + P++ L+ +E ++ KV L SGG+L+I QTE Sbjct: 233 RQISDYLNSNSPEEKEKLRFYDDKLLPLYKLYRLETVLEEIQHEKVWLNSGGFLVIQQTE 292 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 A ++D+N+G F G + + +T N+EA + IARQLRLRNL GII+IDFI+M N+DH+ Sbjct: 293 AFVSIDVNSGKFTGKKKMQETYRKINLEAAKEIARQLRLRNLSGIILIDFINMENQDHQD 352 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 + H L++ L KD VK + L ++E+TRK+ R+ + + Sbjct: 353 ELFHVLQKYLRKDPVKAKAVDITPLHILELTRKKVRKPVIEEIRE 397 >UniRef50_UPI0001973AFC ribonuclease n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973AFC Length = 441 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 128/426 (30%), Positives = 210/426 (49%), Gaps = 24/426 (5%) Query: 2 TAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIG 61 + +LL+ + A + G + +++E RGI+GNIY G+V ++ + +AFVD+G Sbjct: 5 SNKLLITRWNGQILTALTEDGKCRSLNLEPADSRGILGNIYIGKVKNIVKNINSAFVDLG 64 Query: 62 LDKAAFLHASDIMPHTECVA-----------------------GEEQKQFTVRDISELVR 98 + + + H ++ F VR L + Sbjct: 65 SGQIGYYSLKENKRHLFTDEIAAAQAGNRKKTEGEENGTEEGWMKKSDGFPVRAKERLPK 124 Query: 99 QGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVV 158 G +++VQV +D + TK LT+++ +YLV G + +G S +I + +E LKK++ Sbjct: 125 AGDEIIVQVERDAVKTKDPVLTSNLNFTGKYLVLTLGKNQIGFSGKIRDGAWKESLKKIL 184 Query: 159 AEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQR 218 E D+ G I+RT A + + LK +++ L Sbjct: 185 EEKKDDSFGIIVRTNAREADIQSILRELELLKERKSRLFATAGWRTCYSLLSSSEPSYVN 244 Query: 219 VLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQ 277 +RD L+ I D R Y+AL + E E KL Y P+ L+ ++ ++ Sbjct: 245 SIRDTYAENLEAIVTDDRDCYDALRTYMEENQREDLEKLSFYEDTMVPLAKLYSLDTAME 304 Query: 278 RALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRL 337 +AL + V LKSGGYL+I+ TEA+T +D+NTG + G + +TI N EA IARQ++L Sbjct: 305 QALGKHVWLKSGGYLVIEPTEALTVIDVNTGKYAGKKTQAETILRINREAAVEIARQMQL 364 Query: 338 RNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESI 397 RNL GIII+DFIDM+ ++ ++ ++ LE L +D VKT + + LGLVE+TRK+ R + Sbjct: 365 RNLSGIIIVDFIDMDADEDKKELMRLLELELLRDPVKTVLVEMTKLGLVEITRKKIRRPL 424 Query: 398 EHVLCN 403 + Sbjct: 425 AEQVRE 430 >UniRef50_C5RGP2 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGP2_CLOCL Length = 475 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 128/462 (27%), Positives = 225/462 (48%), Gaps = 25/462 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 E+ + R+A D L +IE E + G IY G V ++P ++ AF+DIG Sbjct: 2 NEIFIEKDKPYLRIAIKDHEKLLACYIEEETEEAVPGQIYLGIVKNIVPAIKGAFIDIGK 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K AF+H D + +++G +V+V+++ K A +T+ Sbjct: 62 AKDAFMHL---------------------DNNRDLKKGDYFLVEVLREATELKSANVTSL 100 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 IT+P Y+V P + +S++I + +K+ + + G +R++AE V + Sbjct: 101 ITIPGTYVVVNPMEKALKISRKISNSKFINEVKEQLKDV--STYGITVRSSAENVDINII 158 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + L V K++ + K +Y + R+LRD+ + RI VD Y+ + Sbjct: 159 REEVQALNIVVDKIIAKGKYSLKPQLIYDDGGALGRILRDYINDGTKRIIVDDIKNYDLV 218 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 E + L + + IFD + +E EI +KV LKSGGY+II++TEA+ + Sbjct: 219 KENIEKLHSSAE--LIMHEESRGIFDCYSIEKEILALRHKKVVLKSGGYIIIEKTEALYS 276 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+G G + T F TN+EA + IARQ+ LRNL GII+IDFI+M ++ + V+ Sbjct: 277 IDVNSGKSTGEVAISKTAFKTNLEAAEEIARQIILRNLSGIIVIDFINMKDKKEKTEVIK 336 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 LE A KD KT++ F+ + LV++TRK+ + I L C C G G + + Sbjct: 337 ILEAAFKKDNNKTTIYPFTDVNLVQITRKKRGKDIGSFLEESCKHCGGEGARLKWDYLKL 396 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVE 464 I +++++ + + F++ ++ + + + +E Sbjct: 397 LIKNQLIKLKGQHITKEFVITIDSKYKSEVQKKLTEFITFIE 438 >UniRef50_A6LQR5 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium RepID=A6LQR5_CLOB8 Length = 482 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 136/487 (27%), Positives = 249/487 (51%), Gaps = 26/487 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 E+ V RVA L E +E I+G IYKG++ ++P + + FVD+GL Sbjct: 2 KEIFVERRERILRVAIKSNNELIESIVEESKNEPIIGEIYKGKIKNIIPAINSVFVDLGL 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 DK +L+ SD + + +++G D++V+V+K+PL KGA+LT Sbjct: 62 DKEGYLYYSDELKA------------------KGIKKGDDILVEVLKEPLNDKGAKLTAK 103 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 +++P +Y+V + S+RIE + ++ L + + +RT V L Sbjct: 104 VSIPGKYIVLNCYEQGIEFSKRIEDKEKKIELLSNIEPL--KDVCITVRTEGANVDINIL 161 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 ++ + L + + ++ K ++YGE ++L +F+ E+ +I VD+ + ++ + Sbjct: 162 KNEISKLYDEFQNIDKKMKHSLGVRKIYGEDLTLTKLLMNFSGEEIIKIYVDNSIDFDKI 221 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 F + K+E Y G + +FD + +E E+ R KV L+ GGY++ID+TEAM Sbjct: 222 SSFAKG---QENLKIEKYEGYRKLFDFYGIEKELLRLRHNKVNLQCGGYIVIDRTEAMYV 278 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+G + ++ + TI TN+EA + I +Q+RLRNL GII+IDFIDM ++ R V+ Sbjct: 279 IDVNSGKNIKEKSFNKTILETNLEAAREIGKQIRLRNLSGIIVIDFIDMRDKSQRDIVMD 338 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 +L+++L D+ + F+ L LV++ RKR +SI + EC C GRG + + + Sbjct: 339 ALKESLRLDKGNVKIFPFTQLDLVQIARKRQGKSIYEYMEEECSLCKGRGIILKLSYIEG 398 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 I +IVR+ + F + + ++ + E++ G ++ + + N E Sbjct: 399 LIKNDIVRMQEESSINCFHIQMDSVYKDRIRENIFEFMKEID---GLDKEIYLNYVDNIE 455 Query: 483 QFDVVMM 489 + + + Sbjct: 456 GYKIEPL 462 >UniRef50_Q9M498 Endoribonuclease E (Fragment) n=6 Tax=Magnoliophyta RepID=Q9M498_ARATH Length = 575 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 125/406 (30%), Positives = 212/406 (52%), Gaps = 21/406 (5%) Query: 44 GRVSRVLPGMQAAFVDIGLDKAAFLHA-----SDIMPHTECVAGEEQKQFTVRDISELVR 98 G V+ + A V++G + + +D + VA + + + VR Sbjct: 152 GLVNGTVVNHGA--VEVGSE-NGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVR 208 Query: 99 QGQDLMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVV 158 +G ++VQVVK+ LGTKG LT L SR+ V + +GVS++I ER RLK + Sbjct: 209 KGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISG-VERTRLKVIA 267 Query: 159 AEYCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQT----------RYQ 208 + G +RT A G EL D L W + + K Sbjct: 268 KTLQPQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPAL 327 Query: 209 LYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFD 268 L+ + V++D+ + +++++ VDS TY + + + P++ +++E + P+FD Sbjct: 328 LHRAMGQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFD 387 Query: 269 LFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDINTGA--FVGHRNLDDTIFNTNIE 326 L+++E EI+ L ++V L +GG L+I+QTEA+ ++D+N G F + + I N+ Sbjct: 388 LYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLA 447 Query: 327 ATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLV 386 A + IAR++RLR++GGII++DFIDM +E ++R V +++A+ +DR V+ S GL+ Sbjct: 448 AARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLM 507 Query: 387 EMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVH 432 E+TRKR R S+ ++ C CH G V+ +ET +I +EI R Sbjct: 508 EITRKRVRPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQL 553 Score = 73.7 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 1/101 (0%) Query: 2 TAELLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 +L+N + R+A ++GG L E+ +E ++Y G +++ +P M AFV+I Sbjct: 1 ATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQ 101 G + +F+ + + D S ++ Sbjct: 61 GSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMND 101 >UniRef50_C3WHH5 Ribonuclease G n=4 Tax=Fusobacterium RepID=C3WHH5_9FUSO Length = 459 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 137/489 (28%), Positives = 248/489 (50%), Gaps = 34/489 (6%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ L+++ ET++A ++ L+EI+IERE + I GNIYKG++ +L + FVDI Sbjct: 1 MSKCLILSKNTYETKLALLEDDKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVDI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 GL+K AFL E +K +I L+VQV + KGARLT Sbjct: 61 GLEKNAFLSF------------ENKKNIPKFNIF------DSLIVQVETEARDGKGARLT 102 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 D ++ LV +P + ++ +S++IE+ ++LK + G I+RT + Sbjct: 103 LDYSINGENLVLLPNSKNLSISKKIENLETIKKLKDIFLNI---DKGLILRTKSVEKSPE 159 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L + L+ + ++ + K T LY ++ ++ L D ++D +D ++ Sbjct: 160 ALLEEYKKLEAINNQIQKDFKEKNT-TLLYDNNSILKKAL-TLLDEDIDEFIIDDEDSFN 217 Query: 241 ALLEFTSEYIPEMTSKLEHYTG-RQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEA 299 + E K + IF + ++ +I+RAL+RKV L+SG ++I++TEA Sbjct: 218 KIKNTLEENKRNYLLKKFKKYFKDEDIFSYYKLDTQIERALDRKVYLESGASIVIEKTEA 277 Query: 300 MTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 + ++D+NTG G+++ + IFNTN+EA + IARQ++LRNL GIIIIDFID+ R++ Sbjct: 278 LVSIDVNTGQNTGNQSSQNLIFNTNLEACKEIARQIKLRNLAGIIIIDFIDLKKISDRKK 337 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVET 419 +L L++ L KDR++ + FS LGLV+ TRKR + + +C C G + + + Sbjct: 338 ILEELKRYLKKDRMEINSLDFSHLGLVQFTRKRQGKELSFYYREKCHYCEGTSYLLSKDR 397 Query: 420 VCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLY 479 + + E+ D ++ +K ++ ++ +++ + + + Sbjct: 398 IILNLFAELNSQIKYNDLNK----------IVIKTKKDIIKEIKKLISNPKIEYEEDSNF 447 Query: 480 NQEQFDVVM 488 +E + + + Sbjct: 448 YKEGYKIEL 456 >UniRef50_A7HJB9 Ribonuclease, Rne/Rng family n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HJB9_FERNB Length = 463 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 141/481 (29%), Positives = 262/481 (54%), Gaps = 29/481 (6%) Query: 8 NVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLDKAAF 67 + + + A I+ GIL EI I + I GNIY G++ + +P ++AAFV + D+ AF Sbjct: 8 DGENEKAQAALIENGILAEIFISDDDEESIAGNIYIGKIEKFIPALEAAFVKLPDDENAF 67 Query: 68 LHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDITLPS 127 L DI G + +++ Q ++VQ+ K+ TKG ++TT+I +P Sbjct: 68 LRIKDIKNEYLNFFGISK-----------LQECQKILVQIKKEGGNTKGPQVTTNIGIPG 116 Query: 128 RYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE-QGGFIIRTAAEGVGEAELASDA 186 RY+V+MP + +G+S++I +E++R+ L++V + + GFI+RT+ E + +A Sbjct: 117 RYIVYMPFSKSIGISRKITNENDRKHLREVGEKLKSKYNCGFILRTSCVESKEEYIEKEA 176 Query: 187 AYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALLEFT 246 L + W +++ KR + ++ E + V+R+F E++++ +S + L + Sbjct: 177 EELHKKWEEIVNTFKRSRKTKLIHKESDSDEFVVREFLRKEVEQVITNS----QKLKVIS 232 Query: 247 SEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTVDIN 306 ++ P + KL F+ ++V +IQ +++R EL SGG ++ID+TEA+T +D+N Sbjct: 233 KDFKPNIPVKLI----ESDPFEEYNVYKQIQNSMKRIHELPSGGEIVIDKTEALTIIDVN 288 Query: 307 TGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQ 366 +G + + ++ NIEA + I R +RLRN+GGIIIIDFIDM NE++R +L++++ Sbjct: 289 SGHYTSSESHEELSKKINIEAAKEICRLIRLRNIGGIIIIDFIDMKNEENRLEILNAIKS 348 Query: 367 ALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYEIMR 426 KD+ K V GF+ LGL+EM RKRT +S++ + CP C+G G V + + V +++ Sbjct: 349 ETLKDKNKIEVYGFTQLGLLEMARKRTSKSLDEKMTALCPVCNGTGHVMSPKFVIERLLK 408 Query: 427 EIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDV 486 E+ ++ ++ P++ E + + + + + + E +++ Sbjct: 409 EVKNKPK--NAKEVIIKFHPSLKEFINKDL------LRKTFKVPIHIHF-THLDPESYEI 459 Query: 487 V 487 Sbjct: 460 T 460 >UniRef50_Q0SR50 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium perfringens RepID=Q0SR50_CLOPS Length = 480 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 131/487 (26%), Positives = 244/487 (50%), Gaps = 28/487 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 ++ V + RVA + +L E +IE E+ + G IYKG V RV+PG+++AF+DIG Sbjct: 2 RDIYVERRENLLRVAIKENNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGY 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K A++ + ++QG ++V+V+K+ G+KGA++T+ Sbjct: 62 SKQAYMILGEDEKD--------------------LKQGDGIIVEVLKEQFGSKGAKVTSK 101 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I+L RY V + + +S++IE+ ++ L+ + + G +RT A+ E+ Sbjct: 102 ISLAGRYCVLETSRNDISISRKIENLEFKKELEN--SLIKPSELGVTVRTKAQSASIFEI 159 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + L + + +V+ K ++ G+ L +++RD DA I VDS YE + Sbjct: 160 QEEIEELYKNYKEVIREGKFSLNPKKIMGKGDLINKIIRDDIDAYTSSIIVDSIEDYERI 219 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 + S K+ Y + +FD + +E EI +V L GG ++I++TEAM Sbjct: 220 KDSISN---SEYLKVTLYDDARSLFDYYGIEKEILSLRNNRVNLNCGGDIVIEKTEAMYV 276 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+G H+N + T + TN A IARQ+++RNLGGII++DFIDM ++++++++L Sbjct: 277 IDVNSGKNTNHKNKEKTAYETNKNAAIEIARQIKIRNLGGIILVDFIDMYSQENKKKILK 336 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L+ D + + F+ LGLV++TR R +SI + C C+G G + + Sbjct: 337 ILKDEFKSDSQRAKIFPFTELGLVQITRYRKGKSIYEYIEENCLACNGHGKRLKLSYINL 396 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 + EI++ + F + + + ++G L E+ + + + +++ Sbjct: 397 LLRNEILKKNGEGKIKDFHIEINSIYEKDIRGNIFEFLKEIGA---LDLNIYLNFQESKD 453 Query: 483 QFDVVMM 489 + V + Sbjct: 454 FYKVEPL 460 >UniRef50_Q6B930 Ribonuclease E n=1 Tax=Gracilaria tenuistipitata var. liui RepID=Q6B930_GRATL Length = 497 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 124/408 (30%), Positives = 216/408 (52%), Gaps = 16/408 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +++++ A I+ +QE I V +IY G V ++ + AAF+ + Sbjct: 1 MVKKIVIS--HYNNLAAIINNNKIQE--IITINNPYQVNDIYIGTVEKIFTSINAAFIKL 56 Query: 61 GL-DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 K+ F+H +DI +K V+ I +++ Q ++VQV K+P KG RL Sbjct: 57 NKSGKSGFIHINDI--------KHLKKGKHVKSIEKVLSINQIILVQVTKEPTIYKGPRL 108 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T +I L +YLV MP S + +S +I +ER L + + G +I+++A+GV E Sbjct: 109 TANIHLHGKYLVLMPFCSTICISHKIYDHNERTYLYSLGVLLKPGKMGLLIKSSAQGVKE 168 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + D LK+ W + + + LY + L +R++RDF + + +I +DS+ Sbjct: 169 KIILKDLDDLKKQWGFIEKAIIEYSSPLLLYKDEDLIKRIIRDFYEDSVTKIIIDSKEGL 228 Query: 240 EALLEFTSEYIP---EMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQ 296 L + ++ + + L+ Y ++ I D F +++ I AL+ KV+L GG++II+ Sbjct: 229 NQLNYYLYKWNCISNRIKTILQLYNHQKCILDEFYIKHAINNALKPKVKLPYGGHIIIES 288 Query: 297 TEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDH 356 EA+T +D+N+G+F N + I TN A IA QL++RN+ G+IIIDFIDM+++ Sbjct: 289 NEALTVIDVNSGSFNKSGNSKEAILKTNFYAAIEIAHQLKIRNINGVIIIDFIDMSSQGD 348 Query: 357 RRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNE 404 + ++L + L D K + S LGLVE+TR+R +S++ + +E Sbjct: 349 QLQLLEHFSKLLKLDSAKPQIVQLSELGLVELTRRRRGQSLQELFIHE 396 >UniRef50_O67311 Cytoplasmic axial filament protein n=1 Tax=Aquifex aeolicus RepID=O67311_AQUAE Length = 458 Score = 357 bits (917), Expect = 5e-97, Method: Composition-based stats. Identities = 113/447 (25%), Positives = 223/447 (49%), Gaps = 30/447 (6%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 E+ ++ + G L++ +ER + G KG V + P + F+D+GL Sbjct: 6 EIFISASSFFAFTLVFLGTELKDFKVERRKEKYRTGAFLKGLVKKECPALDGFFLDVGLT 65 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 K A L + + +R G ++VQ+ + KGA++T + Sbjct: 66 KEALLQ--------------------EKKNCKNLRIGDSVIVQLKRKERDLKGAKVTCKV 105 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAELA 183 ++P +Y+V+ P + S++++ + E LKK++ E +++ G IIR +A + ++ Sbjct: 106 SIPGKYIVYFPETKKLNFSKKLKGFAFTEDLKKILKEELNDREGVIIRASAISATKEQIL 165 Query: 184 SDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEALL 243 + L+ W + E+ K+ G+ + +L D+ + I VD+ + ++ Sbjct: 166 KELQELRNKWESLKEKAKKVNKGILEEGQPQFIKTIL-DYWGF-IKNIYVDNGDVWGEIV 223 Query: 244 EFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTTV 303 EF + + KL + + + I + + V LK+GG+++I+QTEA+T++ Sbjct: 224 EF---FGDSIKHKLRYVNTIDTLPGGITLNQLIDKLTSKTVWLKNGGFIVIEQTEALTSI 280 Query: 304 DINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLHS 363 D+N+G ++L++T +N N+EA + +A+Q++ RNL GIII+D IDM E + +L Sbjct: 281 DVNSGE-TCGKSLEETAYNVNLEALKEVAKQIKFRNLSGIIIVDLIDMKKEKTKESLLSE 339 Query: 364 LEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCYE 423 +++ + ++ + G + LGL+EMT+K ESI V+ CP C G+G VK+ E + + Sbjct: 340 VKKIFEGEGLRIKIYGITKLGLLEMTKKWESESIYEVIGETCPHCQGKGFVKSKEFILHT 399 Query: 424 IMREIVRVHHAYDSDRFLVYASPAVAE 450 + + + + ++ P+VA+ Sbjct: 400 LEKALE----KTRGKKIVLKVHPSVAK 422 >UniRef50_A0Q1T9 Ribonuclease G n=4 Tax=Clostridium RepID=A0Q1T9_CLONN Length = 481 Score = 354 bits (908), Expect = 5e-96, Method: Composition-based stats. Identities = 132/487 (27%), Positives = 245/487 (50%), Gaps = 25/487 (5%) Query: 4 ELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 + + R+ + IL+E IE E G IYKG V ++P ++ AF+DIG D Sbjct: 3 TIYIEREEGILRIVLREDDILKECFIEEEKLEPSPGEIYKGVVKNIVPAIKCAFIDIGYD 62 Query: 64 KAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTDI 123 K A+++ + + ++ V+ G +++V+++K+ LG KG ++T+ I Sbjct: 63 KNAYMYLN------------------HKFKNDDVKNGDEVLVEIMKESLGEKGPKVTSSI 104 Query: 124 TLPSRYLVFMPGASHVGVSQRIESESE-RERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 ++P RY+V + +G S++IE + + + + G +IRT A ++ Sbjct: 105 SVPGRYVVIVTHNKKIGFSKKIEDNDNFKSYI--IDNINKPDDIGIMIRTNALDATIEDI 162 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEAL 242 + L + K+++ LY R+L D ++ V++ E + Sbjct: 163 NKELEKLYDNYKKIVQEGTYSLKPKLLYNGGGTLGRILNDILTFNTKKVIVNNEDDAEYI 222 Query: 243 LEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMTT 302 EF + ++ ++E Y+G+Q +F +++E EI K+ L SGG ++ID+TEAM Sbjct: 223 KEFVED-KSDLELEIEVYSGKQSLFSHYNIEKEILSLRNNKIVLPSGGNIVIDRTEAMYV 281 Query: 303 VDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVLH 362 +D+N+G ++D T TN+EA Q IARQ+ +RNL GIIIIDFID++N +++++++H Sbjct: 282 IDVNSGKNTKQTSIDKTALVTNLEAAQEIARQIMMRNLSGIIIIDFIDIHNYEYKKKIMH 341 Query: 363 SLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVCY 422 L++ +D+ KT + F+ L LV++ RKR ++I + +C CHG+ +E + Sbjct: 342 ILKEEFKEDKKKTVIYPFTQLNLVQIARKRRGKAISEYIEEDCSMCHGKSKRIKLEYLNK 401 Query: 423 EIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYNQE 482 I EI ++ Y+ + + + G+ + E+E G + + + N E Sbjct: 402 LIKDEITKIDEGYNIKDIYIEIDEIYKKDILGDIIKFIEEIE---GMHKSIYVNFISNLE 458 Query: 483 QFDVVMM 489 F V + Sbjct: 459 YFKVEPL 465 >UniRef50_B7ANV1 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7ANV1_9BACE Length = 418 Score = 349 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 121/427 (28%), Positives = 202/427 (47%), Gaps = 37/427 (8%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 LL+ +T A D ++ + + I+GNIY GRV V+ + AAF++ Sbjct: 2 QRLLITKFNGQTLCAVCDQMTIRTVRV--IEDESILGNIYVGRVENVVNNINAAFIEYAR 59 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 K + +D E F ++ + G ++VQV ++ + TK LT Sbjct: 60 GKKGYYSLTD----------NEHHIFLNPKNNDRMCIGDLVLVQVSREGVKTKEPTLTGR 109 Query: 123 ITLPSRYLVFM----PGASHVGVSQRIESESERERLKKVVAEYCDE-------------- 164 I + RY S V +S++I E R LK +V + + Sbjct: 110 IGITGRYCALTLDCKSENSSVFISKKITDEDRRSYLKGIVKDAMNNALNAYTASSVNSIP 169 Query: 165 -----QGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRV 219 I+RT AE E + ++ + + +++ + ++Y Sbjct: 170 TASDMHFNIIVRTNAEDAPEEPVTAEVSRIVTTMCDILKDAVTRKGLTRMYSPEESCLED 229 Query: 220 LRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTG-RQPIFDLFDVENEIQR 278 +++ L++I D Y+++ + E P +KLE Y + P+ L+ VE++I Sbjct: 230 VQNMRATNLEKIITDIPEVYDSVRRYLGENEPGEAAKLEFYDDMQLPLNKLYSVESQIST 289 Query: 279 ALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDD-TIFNTNIEATQAIARQLRL 337 AL ++V L SGGYL+I+ TEA+T +D+N+G F G+R L D T N+EA I RQL L Sbjct: 290 ALNKRVWLPSGGYLVIEPTEALTVIDVNSGKFTGNRKLKDNTYLKINMEAAVEIGRQLML 349 Query: 338 RNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESI 397 RNL GII++DFI++N + ++ ++ L L D V TSV + LGLVE+TRK+ R+ + Sbjct: 350 RNLSGIIVVDFINLNTFEEKKELMSYLADILKADTVPTSVVDMTRLGLVEITRKKIRKPL 409 Query: 398 EHVLCNE 404 V+ + Sbjct: 410 HEVIASA 416 >UniRef50_A7B8M6 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7B8M6_RUMGN Length = 413 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 114/404 (28%), Positives = 197/404 (48%), Gaps = 18/404 (4%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREA----RRGIVGNIYKGRVSRVLPGMQAAFV 58 ++L+ + ++ ++ EIH R+ ++G+IY G+V + + AAF+ Sbjct: 4 RKILMLKKEGKIWTFLLENDVIAEIHCSLPDSDQHRQPVLGDIYIGKVKNIAANIGAAFI 63 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 +I K + S Q FT + + + G +L+VQ+ ++ + TK Sbjct: 64 EIAPGKECYYDLSQA----------PQAIFTHKIGKKPLCIGDELVVQISREAVKTKAPT 113 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 ++++I RY V G + +G S ++ S R+ K+ ++ +E G IIRT A+ V Sbjct: 114 VSSNINFTGRYAVLTTGNTRIGTSGKL-PRSLRDTYKEKLSHLKNEDYGLIIRTNAKDVP 172 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 + + L+ K+ E L L++ L I D Sbjct: 173 FETVLEEIQKLENACVKLKETAPFRTCFSCLQEAPPSYITDLKNVYADGLSAIITDDPKL 232 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 Y+ + F PE SKL+ Y + P+ L+ + ++RAL+ V LK+G YL+I T Sbjct: 233 YQQIHGFLQAEQPEDLSKLQFYEEQLLPLSKLYSTDIAVERALKEYVWLKNGAYLVIQPT 292 Query: 298 EAMTTVDINTGAFVGH--RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNED 355 EA+T VD+N+G + + +T N+EA + ARQ+RLRN+ GII+IDFI+M++ D Sbjct: 293 EALTVVDVNSGKYSAKTKKKSAETYLKINLEAAKETARQIRLRNISGIILIDFINMDDPD 352 Query: 356 HRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEH 399 + +L + L +D ++TSV +AL LVE+TRK+ R + Sbjct: 353 MMQELLKQFRRFLGEDPIQTSVVDVTALQLVEVTRKKVRRPLHE 396 >UniRef50_B6INE9 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenum SW RepID=B6INE9_RHOCS Length = 392 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 133/401 (33%), Positives = 207/401 (51%), Gaps = 13/401 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M+ L ++ + +R A + G L ++H++R R +G++ GRV RV+ G+ AAFV+I Sbjct: 1 MSRALHIDRSGPLSRAALLRDGELSDLHLDRLDRPAWLGSLRLGRVVRVVAGLDAAFVEI 60 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G L+A+D+ P + I +L+R GQ ++VQV D G KGA LT Sbjct: 61 GDRLPGLLNAADVRPL------PSGRDRREARIGQLLRTGQAVLVQVKADAHGDKGAVLT 114 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 D+TLP R+LV P S + +S+R+ ER R++ + + +GG+I+R A Sbjct: 115 MDVTLPGRFLVHAPLGSGLHLSRRLGRGPERARVQATLRDLLPAEGGWIVRADAASADPG 174 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 LA +A L W + L R L +F A D IRV+ Sbjct: 175 LLALEAESLWADWRQAARAADGAGAPALLLPAPTAPVRALLEFGGAGFDAIRVEGAEALA 234 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 + + + P++ + + R +F+ D+ I ER+V L GG L+I++TEA+ Sbjct: 235 EVRRWCRDRAPDLEPLVRPHVARLSLFEEGDLAGAIAALAERRVPLAQGGSLVIERTEAL 294 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+N G +TN+EA + IARQLRLRN+GGI+++DF++M R + Sbjct: 295 TVIDVNGGERGN-------PLSTNLEAAREIARQLRLRNVGGIVVVDFVNMAAAADREHL 347 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVL 401 L +L QA+S+D T V G S LGL+EMTR R + +L Sbjct: 348 LLTLTQAVSEDPAGTHVYGLSKLGLMEMTRSRRGPPVADLL 388 >UniRef50_A7VBE5 Putative uncharacterized protein n=3 Tax=cellular organisms RepID=A7VBE5_9CLOT Length = 388 Score = 341 bits (875), Expect = 4e-92, Method: Composition-based stats. Identities = 110/405 (27%), Positives = 194/405 (47%), Gaps = 22/405 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +L++ A G L ++ + R+ I+ NIY G+V ++ + AAFVDIG Sbjct: 2 NKLVITNYEDHILEAVYSDGKLSDLML--FDRQSILSNIYVGKVENIVANIDAAFVDIGT 59 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 + SD + F + +++ G +++VQV KD + TK T++ Sbjct: 60 GLPCYYSISD-----------NKHIFLNAKKNSVLKAGDEILVQVSKDAIKTKNPVATSE 108 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 I L + L + + +G+S +I + R+ L ++ + G I+RT + + + + Sbjct: 109 IELKTENL-LVNTSGRIGISGKIRKKETRDHLHQLAKRVLPDGFGCILRTVCQELPDETI 167 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFA----DAELDRIRVDSRLT 238 SD + L + ++++ K LY A D+ +A L I D +L Sbjct: 168 LSDLSELSKQLKQIIQTAKTRTCYSCLYKNDAEYL----DYFILKHNAGLQEIVTDQKLV 223 Query: 239 YEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTE 298 ++ + SE + + L+++ +++ + +V +KSG YL+I+QTE Sbjct: 224 FDEFAMYLSEKQITDVKLTMYNDKNCNLLTLYNLPRDLENLKKERVWMKSGAYLVIEQTE 283 Query: 299 AMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRR 358 AM +D+NTG V + ++ + N EA + RQLRLRNL GII++DFI+M Sbjct: 284 AMVVIDVNTGKSVDKHSFEEHLLRINSEAAVEVCRQLRLRNLSGIIVVDFINMKQPGSMD 343 Query: 359 RVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 + LEQ L+KD V + + L LVE+TRK+ R+S++ L Sbjct: 344 VIKDILEQELAKDSVPAAFVDVTKLSLVELTRKKIRKSLKEQLTK 388 >UniRef50_A0AIZ2 Complete genome n=21 Tax=Listeria RepID=A0AIZ2_LISW6 Length = 453 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 108/452 (23%), Positives = 199/452 (44%), Gaps = 30/452 (6%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +L++N E RVA ++ L ++ I R + + VG+I+ G + ++ M AAFVD+G Sbjct: 2 KKLIINAAHIEKRVAVLEDDTLIDMEIIRPSEKVQVGDIFYGFIQKIDRKMDAAFVDLGN 61 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 F+H DI E QG + VQ+V++ TK L+ Sbjct: 62 QNKGFIHLKDIPEIFEKN------------------QGAKIPVQIVREGSATKLPLLSAV 103 Query: 123 ITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAEL 182 + P L+++ G +V +S+RI + LKK++ DE IIR+ AE +L Sbjct: 104 LEFPGDLLIYLHGKEYVSISKRIADKEP---LKKIMELLLDENEAVIIRSNAENSSNEQL 160 Query: 183 ASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADA-ELDRIRVDSRLTYEA 241 + + +++ + L + + F I D Sbjct: 161 EIALNQAREKYQLLIKDAATRKKPGLLLSAASGVFTSAKQFIQRYSPTEIMTDDFE---- 216 Query: 242 LLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAMT 301 F ++ +F ++++I+R V L +G L I++TEAM Sbjct: 217 ---FAKTLEVHFPNREIVLKKSSDLFADIGIKSQIERLSRPVVHLPNGSSLFIEKTEAMW 273 Query: 302 TVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRVL 361 +D+N+ F G + T+ + NI+A I R +RLRN+ G+II+DFI +E + Sbjct: 274 VIDVNSSRFKGTAAKEKTVESVNIKAVPEIFRHIRLRNMSGMIIVDFIGGMSEAGHEELY 333 Query: 362 HSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETVC 421 ++E+ ++ T + S GL+++TR++ ++S CP C+G G V + +T+ Sbjct: 334 EAIERQSREEYTTTQIAALSQSGLLQLTRRKKQQSFLEFTTIPCPVCYGTGHVASKDTLA 393 Query: 422 YEIMREIVRVHHAYDSDRFLVYASPAVAEALK 453 +++ RE+ + + + + V +A Sbjct: 394 FQLERELAGIMQGEPNS-IQIITTEDVLDAFL 424 >UniRef50_A6MVU3 Ribonuclease E n=1 Tax=Rhodomonas salina RepID=A6MVU3_RHDSA Length = 429 Score = 337 bits (865), Expect = 5e-91, Method: Composition-based stats. Identities = 117/425 (27%), Positives = 203/425 (47%), Gaps = 14/425 (3%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M L++ ++ Y + ++ ++ IER +G+IY G V VLP + AAF+ + Sbjct: 1 MVKTLVL-AEQNKIGSVYDNDTVITQLIIERGTYH--IGDIYIGIVETVLPSINAAFIIL 57 Query: 61 G-LDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 + F+H +++ G +K+ +I+ + +MVQV+K+P G KG + Sbjct: 58 DYSENNGFIHINNL--------GHLKKKTNSTNITNHLSCNSIVMVQVLKEPNGQKGPTV 109 Query: 120 TTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGE 179 T DITL RYL +P + S+ ES L+ + + G +I A Sbjct: 110 TGDITLRGRYLTLLPFEEDIFFSRDFESNENIVYLRLLFTLLKPKSTGILINKKAIHASI 169 Query: 180 AELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTY 239 + D L W + + + +VL+ ++D I VDS+ Sbjct: 170 NNIIQDFYSLLYEWDSICHNLNYQSAPFLISRNKNFISKVLQKVYSEKVDTILVDSKQGS 229 Query: 240 EALLEFTSEYIPEMTSKLEH-YTGRQPIFDL-FDVENEIQRALERKVELKSGGYLIIDQT 297 + + + +I + + L Y F ++++ + L+ ++ L GGY+II++T Sbjct: 230 KKIASTVTRWIKQKNNTLSIKYFENHNFFVRDYNLDLIVYDLLQSRINLLGGGYIIIEKT 289 Query: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 EA+TT+D+N+G+F N +TI N +A + IAR LRLRN+ G+II+DFIDM N+ + Sbjct: 290 EALTTIDVNSGSFNYLNNPRETILLVNRKAAKQIARHLRLRNISGVIIVDFIDMKNQQDQ 349 Query: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 +L + L +D + + FS LGLVE+TRKR S+ + N R + ++ Sbjct: 350 LALLLHFDSFLKQDEQRPRIIQFSELGLVELTRKRQGRSLLEMFSNSNGDLSNRSCISSI 409 Query: 418 ETVCY 422 + Y Sbjct: 410 VSQSY 414 >UniRef50_A4TUF8 Ribonucleases G and E n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TUF8_9PROT Length = 435 Score = 337 bits (864), Expect = 8e-91, Method: Composition-based stats. Identities = 127/487 (26%), Positives = 220/487 (45%), Gaps = 54/487 (11%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 M +E+L + P E+R+A + G L ++ + R + + G + GRV + P M A FVDI Sbjct: 1 MASEILYSWGPGESRLALVRDGRLVDLAVIRPS--LLAGAVVLGRVVELAPKMGAIFVDI 58 Query: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 G DK FL + QG ++VQV D G KGA LT Sbjct: 59 GQDKPGFLQ------------------------GVKLNQGASVLVQVKADAQGLKGAVLT 94 Query: 121 TDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEA 180 T++ L R++ + P + V +++ + R L++ +A + G + R A E Sbjct: 95 TEVVLSGRFIAYTPMRPGLSVPRKLSDD-RRAILQERLACMMHDDEGIVARLHAVNADEP 153 Query: 181 ELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYE 240 L +D L+ W ++ + ++ + L+ R+L D + R+ VD L + Sbjct: 154 ALEADLTALRGQWQQMQQGQREARAPAVLWR-PDPLDRMLSDH--PGVSRVLVDDDLAFA 210 Query: 241 ALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 +E + G P+FDL+D E+ + L V L GG + T A+ Sbjct: 211 QAQA-------RFGGLVERHRGG-PVFDLYDTEDAVAACLAPVVPLPCGGRVTFQGTAAL 262 Query: 301 TTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRRV 360 T +D+++G N +A IARQLRLRN+ G II+DF+ + ++ Sbjct: 263 TAIDVDSGPAQ--------PIEANQQAVSVIARQLRLRNIAGQIIVDFVSAGGKGALIKL 314 Query: 361 LHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTVETV 420 + +L+Q++S D T V G +ALGLVEMTR+R S+ ++ + + + Sbjct: 315 IAALKQSISSDPTATHVIGATALGLVEMTRERRGPSLSDLMVENVA-------LLSPQAA 367 Query: 421 CYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEPLYN 480 +R ++ + + +P VA L G+ + +LAE+E +G++ ++ E Sbjct: 368 ALRALRLVLAEAAHHPGRALTLTVAPDVAAILHGQ-TGALAEIEARLGRKPMIRAEEGRA 426 Query: 481 QEQFDVV 487 ++ V Sbjct: 427 RDDIAVT 433 >UniRef50_C9L8D6 Ribonucleases G and E n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L8D6_RUMHA Length = 400 Score = 336 bits (863), Expect = 8e-91, Method: Composition-based stats. Identities = 103/410 (25%), Positives = 212/410 (51%), Gaps = 19/410 (4%) Query: 1 MTA--ELLVNVTPSE---TRVAYID-GGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQ 54 M +L++ VA ++ G + +++ I+GNIY G+V + +Q Sbjct: 1 MKKLSKLILTEMNYRNTPILVAALEKEGRICQLNPMSLNSDSILGNIYIGKVKNIQKNIQ 60 Query: 55 AAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGT 114 AAF++I + ++ + F + +++ G +++VQV K+ + + Sbjct: 61 AAFIEIENGIMCYYSMAE----------KASPCFVNVKKNNVLKIGDEMIVQVSKEGIKS 110 Query: 115 KGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAA 174 K +++++ RYLV +G S +++ + E++++++++ + E G I+RT Sbjct: 111 KLPYVSSNLNFTGRYLVLTSERKELGFSGKLK-KEEKKQIREILKDKIPENVGIIVRTNC 169 Query: 175 EGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVD 234 E E+ + L + + V+++ K L + ++L++ +L+ I D Sbjct: 170 RDAQEEEILHELEELMKRYEAVLQKGKSRVCFSVLEKSMPEYVQILQNLYSQDLEEIVTD 229 Query: 235 SRLTYEALLEFTSEYIPEMTSKLEHYTGRQ-PIFDLFDVENEIQRALERKVELKSGGYLI 293 + YE +++ Y + + +Y + P++ L++++ ++A +V LKSGG+L+ Sbjct: 230 KQELYECAVQYLKGY-KQQEKIVRYYEDKLLPLYKLYNLQKAFEQAQNERVWLKSGGFLV 288 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 I QTEA +D+NTG +++ +T N+EA + IA QLRLRNL GII+IDFI++ Sbjct: 289 IQQTEAFVCIDVNTGKCTSKKDMQETFRKINLEAAKEIAWQLRLRNLSGIILIDFINLER 348 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 + + ++ +L++ L +D +K +V + L +VE+TRK+ R+S+ L Sbjct: 349 AEDKEELMQTLQKYLWQDSIKGTVVDMTELNIVEVTRKKVRKSLAEELKE 398 >UniRef50_C7G7S7 Ribonuclease, Rne/Rng family n=2 Tax=Roseburia RepID=C7G7S7_9FIRM Length = 418 Score = 336 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 121/428 (28%), Positives = 202/428 (47%), Gaps = 36/428 (8%) Query: 1 MTAELLVNVTPS--ETRVAYIDG--GILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAA 56 M ++ E R+A + L E+ E ++GNIY GRV V+ + AA Sbjct: 1 MNRFIITTTEIEKKEYRIAALCDARQKLIEVTTESMTGTSVLGNIYIGRVENVVKNLNAA 60 Query: 57 FVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKG 116 FV I + +L ++ E+K + G +L+VQVVK+ L TK Sbjct: 61 FVCIAPGQNCYLPLQELKNPIFTKKQSEKK---------AICAGDELLVQVVKEALKTKD 111 Query: 117 ARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDE----QGGFIIRT 172 ++T++T +Y++ G +G S ++ + +RE+L K+V ++ G ++RT Sbjct: 112 PSVSTNLTFTGKYVILTTGKRKIGASSKL-PKEKREKLLKIVEDFLSGKEQIPYGVVVRT 170 Query: 173 AAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIR 232 A + EL + A L+ K++ K ++ E Q++L + EL + Sbjct: 171 NAAQASKEELLLELAQLEAEVQKIISGAKYLIRYSLVHKEEQPWQKMLNGLYETELGEVV 230 Query: 233 VDSRLTYEALLEF-----------------TSEYIPEMTSKLEHYTGRQ-PIFDLFDVEN 274 D R +E + E + K+ +Y + L + + Sbjct: 231 TDDREIFETICNMYGVGAKQLVTGGSVRSRVDEILTGHGLKIRYYEDEMVSLSALSGITS 290 Query: 275 EIQRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ 334 ++ AL +V LKSG YLII TEA+T +D+NTG + + + + NIEA + IARQ Sbjct: 291 QLHDALRERVWLKSGAYLIIQPTEALTVIDVNTGKNIAKKEMQENFLKVNIEAAEEIARQ 350 Query: 335 LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTR 394 LRLRN+ GI+I+DFI++ + +L+ AL KD V T + + LGLVE+TRK+ + Sbjct: 351 LRLRNISGIVIVDFINLEAKSAESELLNVFGAALKKDPVPTQIVEMTKLGLVEVTRKKIK 410 Query: 395 ESIEHVLC 402 +S+ L Sbjct: 411 KSLRESLS 418 >UniRef50_C0BCI6 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BCI6_9FIRM Length = 396 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 112/409 (27%), Positives = 196/409 (47%), Gaps = 21/409 (5%) Query: 1 MTAELLVNVTPSETRVAYIDGGILQEIHI--EREARRGIVGNIYKGRVSRVLPGMQAAFV 58 M ++L+ + +A ++ + E H E + +G IY GRV ++LP + AFV Sbjct: 1 MERKVLLTECMNRRVLALLEDEKVTEFHFGSSGEKKSCRLGEIYVGRVRKILPNIGGAFV 60 Query: 59 DIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGAR 118 +I + + + ++ + G +L+VQV K+ + TK Sbjct: 61 EIANGEQCYFALDEKYTPVFTNKIGKKP----------LVIGDELLVQVEKEAVKTKQPV 110 Query: 119 LTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVG 178 +T ++ +Y+V G +GVS +I + +E L+K+ +Y D G I RT Sbjct: 111 VTGNLNFTGQYVVLTSGNRTIGVSGKIHG-ARKEELQKLGQDYIDCDFGLIFRTNCVEAE 169 Query: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIR----VD 234 E ++ ++ L + +++E K L + LRD +L I V+ Sbjct: 170 ETQIRAEIDKLTENYHRIVEYGKMRTCFSCLQSAPDPCVQALRDIYKKDLTEIIVEETVE 229 Query: 235 SRLTYEALLEFTSEYIPEMTSKLEHYTG-RQPIFDLFDVENEIQRALERKVELKSGGYLI 293 Y+ + + +P+ L YT P+ +++E I+ A + +V +KSG YL+ Sbjct: 230 DGALYKEVQTYLETEMPDELPLLRAYTDASYPLVKCYNLEGAIREARQERVWMKSGAYLV 289 Query: 294 IDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNN 353 I TEA+T +D+N+G + + N EA + RQ+RLRN+ GIIIIDFI+M + Sbjct: 290 IQPTEALTVIDVNSGKCLKKNS---HFPEINREAAREAVRQIRLRNISGIIIIDFINMKS 346 Query: 354 EDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLC 402 + ++ +L L+ L KD +V G + L LVE+TRK+ R+++E L Sbjct: 347 AEEKKELLAYLQLELKKDPNPGNVIGMTKLQLVEITRKKIRKTLEESLH 395 >UniRef50_UPI0001BC3959 ribonuclease G n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC3959 Length = 386 Score = 324 bits (832), Expect = 3e-87, Method: Composition-based stats. Identities = 115/404 (28%), Positives = 196/404 (48%), Gaps = 24/404 (5%) Query: 3 AELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGL 62 +L++ + + G EI + E I+ NIY GRV++V+P + +AFV+I Sbjct: 2 KKLVITGYREKNTAVLFEDGKETEIRVI-EEEGSILNNIYVGRVNKVVPNINSAFVEISK 60 Query: 63 DKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLTTD 122 +L ++ E F R ++ V QG ++VQVVKD + TK +T Sbjct: 61 GIICYLPINE-----------EHVIFLNRKNTDKVCQGDIVLVQVVKDAIKTKRPMVTCK 109 Query: 123 ITLPSRYL-VFMPGASHVGVSQRIESESERERLKKVVAEYCDEQGGFIIRTAAEGVGEAE 181 + + +Y+ + +GVS++I LK ++ EY ++ GFI+RT AE + Sbjct: 110 LNISGKYVAISFDNKGIIGVSKKITDSRRIAELKTLLKEYATDEYGFIVRTEAEHADNKD 169 Query: 182 LASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLTYEA 241 + +A L + ++ + ++ + D + D YEA Sbjct: 170 ICDEALKLVNEFEDIVRISSMRPAFTLIKKGGNSVDDMVSSMKLRKEDEVITDIPEIYEA 229 Query: 242 LLEFTSEYIPEMTSKLEHYTGR-QPIFDLFDVENEIQRALERKVELKSGGYLIIDQTEAM 300 L + + Y + L+++E I AL + V LK GGYL+I+QTEA+ Sbjct: 230 L--------SDKEYTVSLYQDTMISLKTLYNIEKIINDALSKYVWLKRGGYLVIEQTEAL 281 Query: 301 TTVDINTGAFVGH-RNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHRRR 359 T +D+NTG + G ++ +DT N+EA + + RQLRLRN+ GI+++DFI+M ++ + + Sbjct: 282 TVIDVNTGKYDGKDKDREDTFLKINMEAAEEVERQLRLRNISGIVVVDFINMKDD-NIKI 340 Query: 360 VLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCN 403 + L L KD VK ++ LGLVE+TR++ R S+ Sbjct: 341 LTDELCTQLKKDIVKCKYVDYTKLGLVEITRQKIRRSLIEYFTK 384 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.156 0.443 Lambda K H 0.267 0.0476 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,359,364,921 Number of Sequences: 3077464 Number of extensions: 169341330 Number of successful extensions: 500201 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 893 Number of HSP's successfully gapped in prelim test: 190 Number of HSP's that attempted gapping in prelim test: 496140 Number of HSP's gapped (non-prelim): 1560 length of query: 489 length of database: 1,040,396,356 effective HSP length: 133 effective length of query: 356 effective length of database: 631,093,644 effective search space: 224669337264 effective search space used: 224669337264 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 96 (41.4 bits)