Phyre 2 alignment of P08401 with c2rm8A_

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Job Description | P08401
Confidence | 88.19% | Date | Thu Jan 5 11:01:29 GMT 2012
Rank | 77 | Aligned Residues | 59
% Identity | 15% | Template | c2rm8A_
PDB info | PDB header:signaling protein | Chain: A: PDB Molecule:sensory rhodopsin ii transducer; | PDBTitle: the solution structure of phototactic transducer protein2 htrii linker region from natronomonas pharaonis
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 220 | . | . | . | . |  | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | V | T | D | N | K | . | P | V | P | L | P | D | L | G | S | S | E | L | R | K | L | A | Q | A | L | E | S | M | R | V | K | L | E | G | K | N | Y | I | E | Q | Y | V | Y | A | L | T | H | E | L | K | S | P | L | A | A | I | R | G | A | A
Query Conservation |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | M | G | D | G | D | L | D | V | E | L | E | T | R | R | E | D | E | I | G | D | L | Y | A | A | F | D | E | M | R | Q | S | V | R | T | S | L | E | D | A | K | N | A | R | E | D | A | E | Q | A | Q | K | R | A | E | E | I | N | T | E | L
Template Known Secondary structure |  |  |  |  | S |  |  |  | T | T | T | S | T | T | S |  | S | S |  | S | S | S |  |  |  | T | T | T |  |  |  |  | T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G |  | T | T | G | G | G
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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