BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (93 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P76692 Putative uncharacterized protein yzgL n=43 Tax=E... 182 4e-45 UniRef50_C5WA05 Ybl144 protein n=29 Tax=Enterobacteriaceae RepID... 136 2e-31 UniRef50_B1LI88 Putative uncharacterized protein n=2 Tax=Escheri... 121 8e-27 >UniRef50_P76692 Putative uncharacterized protein yzgL n=43 Tax=Enterobacteriaceae RepID=YZGL_ECOLI Length = 93 Score = 182 bits (461), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 93/93 (100%), Positives = 93/93 (100%) Query: 1 MQNRKWILTSLVMTFFGIPILAQFLAVVIAMLGVGLAGIIEVCNILITPTIYLLLKIFML 60 MQNRKWILTSLVMTFFGIPILAQFLAVVIAMLGVGLAGIIEVCNILITPTIYLLLKIFML Sbjct: 1 MQNRKWILTSLVMTFFGIPILAQFLAVVIAMLGVGLAGIIEVCNILITPTIYLLLKIFML 60 Query: 61 ALGALMLFFSGRVGNVPEFCYVGYDGVGFAVIP 93 ALGALMLFFSGRVGNVPEFCYVGYDGVGFAVIP Sbjct: 61 ALGALMLFFSGRVGNVPEFCYVGYDGVGFAVIP 93 >UniRef50_C5WA05 Ybl144 protein n=29 Tax=Enterobacteriaceae RepID=C5WA05_ECOBB Length = 501 Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 72/81 (88%), Positives = 73/81 (90%), Gaps = 3/81 (3%) Query: 1 MQNRKWILTSLVMTFFGIPILAQFLAVVIAMLGVGLAGIIEVCNILITPTIYLLLKIFML 60 MQNRKWILTSLVMTFFGIPILAQFLA VIAMLGVGLAGIIEVCNI ITPTIYLLL IFML Sbjct: 1 MQNRKWILTSLVMTFFGIPILAQFLAAVIAMLGVGLAGIIEVCNIFITPTIYLLLNIFML 60 Query: 61 ALGALMLFFSGRV---GNVPE 78 ALGALMLFFSGRV + PE Sbjct: 61 ALGALMLFFSGRVWADDSAPE 81 >UniRef50_B1LI88 Putative uncharacterized protein n=2 Tax=Escherichia coli RepID=B1LI88_ECOSM Length = 501 Score = 121 bits (303), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 62/81 (76%), Positives = 68/81 (83%), Gaps = 3/81 (3%) Query: 1 MQNRKWILTSLVMTFFGIPILAQFLAVVIAMLGVGLAGIIEVCNILITPTIYLLLKIFML 60 MQN KWILTSLVMTFFGIPILAQFLA V+AMLG GLA I +VCN+L TPTIYLLL +FML Sbjct: 1 MQNGKWILTSLVMTFFGIPILAQFLAAVVAMLGAGLAAIFDVCNLLFTPTIYLLLNVFML 60 Query: 61 ALGALMLFFSGRV---GNVPE 78 LGAL+LFFSGRV + PE Sbjct: 61 TLGALLLFFSGRVWAGDSAPE 81 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C5WA05 Ybl144 protein n=29 Tax=Enterobacteriaceae RepID... 130 1e-29 UniRef50_B1LI88 Putative uncharacterized protein n=2 Tax=Escheri... 128 4e-29 UniRef50_P76692 Putative uncharacterized protein yzgL n=43 Tax=E... 124 6e-28 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_C5WA05 Ybl144 protein n=29 Tax=Enterobacteriaceae RepID=C5WA05_ECOBB Length = 501 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 72/81 (88%), Positives = 73/81 (90%), Gaps = 3/81 (3%) Query: 1 MQNRKWILTSLVMTFFGIPILAQFLAVVIAMLGVGLAGIIEVCNILITPTIYLLLKIFML 60 MQNRKWILTSLVMTFFGIPILAQFLA VIAMLGVGLAGIIEVCNI ITPTIYLLL IFML Sbjct: 1 MQNRKWILTSLVMTFFGIPILAQFLAAVIAMLGVGLAGIIEVCNIFITPTIYLLLNIFML 60 Query: 61 ALGALMLFFSGRV---GNVPE 78 ALGALMLFFSGRV + PE Sbjct: 61 ALGALMLFFSGRVWADDSAPE 81 >UniRef50_B1LI88 Putative uncharacterized protein n=2 Tax=Escherichia coli RepID=B1LI88_ECOSM Length = 501 Score = 128 bits (323), Expect = 4e-29, Method: Composition-based stats. Identities = 62/81 (76%), Positives = 68/81 (83%), Gaps = 3/81 (3%) Query: 1 MQNRKWILTSLVMTFFGIPILAQFLAVVIAMLGVGLAGIIEVCNILITPTIYLLLKIFML 60 MQN KWILTSLVMTFFGIPILAQFLA V+AMLG GLA I +VCN+L TPTIYLLL +FML Sbjct: 1 MQNGKWILTSLVMTFFGIPILAQFLAAVVAMLGAGLAAIFDVCNLLFTPTIYLLLNVFML 60 Query: 61 ALGALMLFFSGRV---GNVPE 78 LGAL+LFFSGRV + PE Sbjct: 61 TLGALLLFFSGRVWAGDSAPE 81 >UniRef50_P76692 Putative uncharacterized protein yzgL n=43 Tax=Enterobacteriaceae RepID=YZGL_ECOLI Length = 93 Score = 124 bits (313), Expect = 6e-28, Method: Composition-based stats. Identities = 93/93 (100%), Positives = 93/93 (100%) Query: 1 MQNRKWILTSLVMTFFGIPILAQFLAVVIAMLGVGLAGIIEVCNILITPTIYLLLKIFML 60 MQNRKWILTSLVMTFFGIPILAQFLAVVIAMLGVGLAGIIEVCNILITPTIYLLLKIFML Sbjct: 1 MQNRKWILTSLVMTFFGIPILAQFLAVVIAMLGVGLAGIIEVCNILITPTIYLLLKIFML 60 Query: 61 ALGALMLFFSGRVGNVPEFCYVGYDGVGFAVIP 93 ALGALMLFFSGRVGNVPEFCYVGYDGVGFAVIP Sbjct: 61 ALGALMLFFSGRVGNVPEFCYVGYDGVGFAVIP 93 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.334 0.156 0.503 Lambda K H 0.267 0.0481 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 453,593,033 Number of Sequences: 3077464 Number of extensions: 19402216 Number of successful extensions: 105491 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 105485 Number of HSP's gapped (non-prelim): 8 length of query: 93 length of database: 1,040,396,356 effective HSP length: 63 effective length of query: 30 effective length of database: 846,516,124 effective search space: 25395483720 effective search space used: 25395483720 T: 11 A: 40 X1: 16 ( 7.7 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 87 (37.9 bits)