| Secondary structure and disorder prediction |   |
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1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
| Sequence |   |
M | N | T | L | R | Y | F | D | F | G | A | A | R | P | V | L | L | L | I | A | R | I | A | V | V | L | I | F | I | I | F | G | F | P | K | M | M | G | F | D | G | T | V | Q | Y | M | A | S | L | G | A | P | M | P | M | L | A | A | I | I |
| Secondary structure |   |
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| Disorder |   |
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. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
| Sequence |   |
A | V | V | M | E | V | P | A | A | I | L | I | V | L | G | F | F | T | R | P | L | A | V | L | F | I | F | Y | T | L | G | T | A | V | I | G | H | H | Y | W | D | M | T | G | D | A | V | G | P | N | M | I | N | F | W | K | N | V | S | I |
| Secondary structure |   |
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. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
| Sequence |   |
A | G | A | F | L | L | L | A | I | T | G | P | G | A | I | S | L | D | R | R |
| Secondary structure |   |
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| Confidence Key |
| High(9) |   |
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Low (0) |
| ? | Disordered |
  | Alpha helix |
  | Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
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| 1 |
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PDB 1adu chain B
Region: 9 - 41 Aligned: 33 Modelled: 33 Confidence: 13.3% Identity: 12% PDB header:dna-binding protein Chain: B: PDB Molecule:adenovirus single-stranded dna-binding protein;
PDBTitle: early e2a dna-binding protein
Phyre2
| 2 |
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PDB 1c8m chain 4
Region: 2 - 15 Aligned: 14 Modelled: 14 Confidence: 6.5% Identity: 14% PDB header:virus Chain: 4: PDB Molecule:human rhinovirus 16 coat protein;
PDBTitle: refined crystal structure of human rhinovirus 16 complexed2 with vp63843 (pleconaril), an anti-picornaviral drug3 currently in clinical trials
Phyre2
|
| Detailed template information |   |
| Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
| Transmembrane helix prediction |   |
Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
| If you use the binding site
predictions from 3DLigandSite, please also cite: |
| 3DLigandSite: predicting ligand-binding sites using similar structures. |
| Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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