07/01/2012 01:21:33 : INFO  : Run start: Sat Jan  7 01:21:33 GMT 2012
07/01/2012 01:21:34 : INFO  : Initialised job
07/01/2012 01:21:35 : INFO  : Renaming log file 'phyre2_20120107_012133.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/0d0b76ba61a46dec/phyre_20120107_012133.log'
07/01/2012 01:21:39 : INFO  : Initialised job:
Sequence
>batch____
MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGKS
GHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLK
RLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLK
ARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMT
VICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADVMTPGGIRVRPGILAVEALNLMQSR
HITSVMVADGDHLLGVLHMHDLLRAGVV

07/01/2012 01:21:39 : INFO  : Checked sequence
07/01/2012 01:21:40 : INFO  : Finding homologues with PSI-BLAST
07/01/2012 01:21:40 : INFO  : PSI-BLAST 3 iterations
07/01/2012 01:23:45 : INFO  : PSI-BLAST 5 iterations
07/01/2012 01:26:35 : INFO  : Finished PSI-BLAST
07/01/2012 01:26:36 : INFO  : Running Buildali to generate a3m file
07/01/2012 02:02:05 : INFO  : Converting to HMM
07/01/2012 02:02:10 : INFO  : Calibrating HMM
07/01/2012 02:02:21 : INFO  : Searching HMM database
07/01/2012 02:07:58 : INFO  : Finished buildali
07/01/2012 02:08:00 : INFO  : Predicting secondary structure
07/01/2012 02:08:06 : INFO  : Predicted secondary structure (PSI-Pred)
07/01/2012 02:08:07 : INFO  : Predicting Disordered regions
07/01/2012 02:08:11 : INFO  : Predicted Disorder (Disopred)
07/01/2012 02:08:12 : INFO  : Running memsat_svm check
07/01/2012 02:10:37 : INFO  : Running memsat_svm full
07/01/2012 02:15:54 : INFO  : Predicted Transmembrane (memsat_svm) ID '0d0b76ba61a46dec'
07/01/2012 02:15:56 : INFO  : Initialising fold library search
07/01/2012 02:15:59 : INFO  : Initialised search input
07/01/2012 02:16:02 : INFO  : Building Ensemble models
07/01/2012 02:16:06 : INFO  : Building hh.c2xhzC_.model.1.pdb
07/01/2012 02:16:22 : INFO  : Building hh.c3fj1A_.model.2.pdb
07/01/2012 02:16:33 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0d0b76ba61a46dec/hh.c3fj1A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0d0b76ba61a46dec/c3fj1A_.13.pdb
07/01/2012 02:16:37 : INFO  : Building hh.c3fnaA_.model.3.pdb
07/01/2012 02:16:50 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0d0b76ba61a46dec/hh.c3fnaA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0d0b76ba61a46dec/c3fnaA_.25.pdb
07/01/2012 02:16:56 : INFO  : Building c3etnD_.1.pdb
07/01/2012 02:17:11 : INFO  : Building c3fxaA_.2.pdb
07/01/2012 02:17:26 : INFO  : Building c2xhzC_.3.pdb
07/01/2012 02:17:42 : INFO  : Building c3cvjB_.4.pdb
07/01/2012 02:17:58 : INFO  : Building d1vima_.5.pdb
07/01/2012 02:18:16 : INFO  : Building d1m3sa_.6.pdb
07/01/2012 02:18:34 : INFO  : Building c3shoA_.7.pdb
07/01/2012 02:18:54 : INFO  : Building d1jeoa_.8.pdb
07/01/2012 02:19:12 : INFO  : Building d1nria_.9.pdb
07/01/2012 02:19:27 : INFO  : Building c1nriA_.10.pdb
07/01/2012 02:19:43 : INFO  : Building c2yvaB_.11.pdb
07/01/2012 02:19:59 : INFO  : Building d1x92a_.12.pdb
07/01/2012 02:20:15 : INFO  : Building c3fj1A_.13.pdb
07/01/2012 02:20:29 : INFO  : Building c2puwA_.14.pdb
07/01/2012 02:20:45 : INFO  : Building c2zj3A_.15.pdb
07/01/2012 02:21:03 : INFO  : Building c2amlB_.16.pdb
07/01/2012 02:21:19 : INFO  : Building d1tk9a_.17.pdb
07/01/2012 02:21:36 : INFO  : Building d1moqa_.18.pdb
07/01/2012 02:21:53 : INFO  : Building c3trjC_.19.pdb
07/01/2012 02:22:09 : INFO  : Building c3hbaA_.20.pdb
07/01/2012 02:23:22 : INFO  : Finished HH model building
07/01/2012 02:23:24 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
07/01/2012 02:24:29 : INFO  : html domain output complete ID '0d0b76ba61a46dec'
07/01/2012 02:59:05 : INFO  : Run end  : Sat Jan  7 02:59:04 GMT 2012
