BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (366 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A5F4M4 tRNA (uracil-5-)-methyltransferase n=202 Tax=Gam... 499 e-140 UniRef50_A7MXY6 tRNA (uracil-5-)-methyltransferase n=78 Tax=Prot... 494 e-138 UniRef50_A0KQR3 tRNA (uracil-5-)-methyltransferase n=93 Tax=Prot... 490 e-137 UniRef50_A8GYV6 tRNA (uracil-5-)-methyltransferase n=12 Tax=Gamm... 469 e-131 UniRef50_A6W3C7 tRNA (uracil-5-)-methyltransferase n=9 Tax=Gamma... 391 e-107 UniRef50_Q31JA4 tRNA (uracil-5-)-methyltransferase n=5 Tax=Prote... 360 4e-98 UniRef50_A5EXH9 tRNA (uracil-5-)-methyltransferase n=1 Tax=Diche... 339 1e-91 UniRef50_A4BHH3 TRNA (Uracil-5-)-methyltransferase n=1 Tax=Reine... 336 7e-91 UniRef50_A4RUE5 Predicted protein n=8 Tax=cellular organisms Rep... 334 2e-90 UniRef50_A8HPV8 tRNA (Uracil-5-)-methyltransferase (Fragment) n=... 334 3e-90 UniRef50_C1E3C6 Predicted protein n=2 Tax=Micromonas RepID=C1E3C... 327 5e-88 UniRef50_A6QBC0 tRNA (uracil-5-)-methyltransferase n=4 Tax=Epsil... 326 1e-87 UniRef50_A8EWU8 tRNA (uracil-5-)-methyltransferase n=3 Tax=Campy... 317 4e-85 UniRef50_A4A8C7 tRNA (Uracil-5-)-methyltransferase n=4 Tax=Gamma... 310 5e-83 UniRef50_A6DAM4 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Camin... 289 1e-76 UniRef50_C5EY89 tRNA (Uracil-5-)-methyltransferase n=3 Tax=Helic... 281 2e-74 UniRef50_B9LA97 tRNA (uracil-5-)-methyltransferase n=1 Tax=Nauti... 276 1e-72 UniRef50_UPI00003979FC COG2265: SAM-dependent methyltransferases... 275 2e-72 UniRef50_C5ZX30 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Helic... 264 5e-69 UniRef50_C6RGK1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Campy... 253 1e-65 UniRef50_B9D5E5 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Campy... 248 4e-64 UniRef50_A1VZH5 tRNA (uracil-5-)-methyltransferase n=17 Tax=Camp... 247 6e-64 UniRef50_A0RPL1 tRNA (uracil-5-)-methyltransferase n=4 Tax=Campy... 245 1e-63 UniRef50_Q7U326 tRNA (uracil-5-)-methyltransferase n=2 Tax=Helic... 229 2e-58 UniRef50_C8PJJ3 Trna (Uracil-5-)-methyltransferase (Trna(M-5-u54... 169 2e-40 UniRef50_A9V6A5 Predicted protein n=1 Tax=Monosiga brevicollis R... 152 2e-35 UniRef50_C1E1T7 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 152 2e-35 UniRef50_C1EBD1 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 148 2e-34 UniRef50_A4RQU4 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 146 1e-33 UniRef50_C1MPR1 Predicted protein n=1 Tax=Micromonas pusilla CCM... 137 5e-31 UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 112 2e-23 UniRef50_A9BFH8 RNA methyltransferase, TrmA family n=1 Tax=Petro... 106 1e-21 UniRef50_C1MV95 Predicted protein n=1 Tax=Micromonas pusilla CCM... 105 2e-21 UniRef50_Q1IVF7 (Uracil-5)-methyltransferase n=1 Tax=Candidatus ... 103 1e-20 UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desul... 103 1e-20 UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marin... 102 2e-20 UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 100 6e-20 UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 T... 99 2e-19 UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 99 2e-19 UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=P... 99 3e-19 UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 98 5e-19 UniRef50_B7FQ55 Predicted protein n=2 Tax=Bacillariophyta RepID=... 97 9e-19 UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 97 1e-18 UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammon... 97 1e-18 UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=unculture... 95 3e-18 UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillac... 95 3e-18 UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clost... 94 6e-18 UniRef50_Q01U84 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 94 1e-17 UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacte... 94 1e-17 UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Therm... 94 1e-17 UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 ... 93 1e-17 UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=... 93 1e-17 UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacil... 93 1e-17 UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moore... 93 1e-17 UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 93 2e-17 UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 92 2e-17 UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=... 92 3e-17 UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=2... 92 4e-17 UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA ... 92 4e-17 UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 92 4e-17 UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36... 91 5e-17 UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Rosei... 91 5e-17 UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bact... 91 6e-17 UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdema... 91 6e-17 UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desul... 91 6e-17 UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase ... 91 7e-17 UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 ... 91 8e-17 UniRef50_Q72IZ3 Uncharacterized RNA methyltransferase TT_C0988 n... 91 1e-16 UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bactero... 90 1e-16 UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 90 1e-16 UniRef50_A4BBK4 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=R... 89 2e-16 UniRef50_Q6ANA2 Related to RNA-methyltransferase n=1 Tax=Desulfo... 89 2e-16 UniRef50_C7GZ13 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 89 2e-16 UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desul... 89 2e-16 UniRef50_C0W1I3 23S rRNA methyluridine methyltransferase n=1 Tax... 89 3e-16 UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 88 4e-16 UniRef50_P33753 tRNA (uracil-5-)-methyltransferase n=17 Tax=Sacc... 88 4e-16 UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 88 4e-16 UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachl... 88 4e-16 UniRef50_A6GEE5 RNA methyltransferase, TrmA family protein n=1 T... 88 5e-16 UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halot... 88 5e-16 UniRef50_Q1MXP1 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=B... 88 6e-16 UniRef50_A9WK13 RNA methyltransferase, TrmA family n=3 Tax=Chlor... 87 7e-16 UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=S... 87 7e-16 UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonel... 87 8e-16 UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmo... 87 9e-16 UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22... 87 9e-16 UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1... 87 1e-15 UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10... 87 1e-15 UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 86 2e-15 UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 86 2e-15 UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Therm... 86 2e-15 UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdema... 86 3e-15 UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzym... 86 3e-15 UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 85 3e-15 UniRef50_B7CCQ1 Putative uncharacterized protein n=1 Tax=Eubacte... 85 3e-15 UniRef50_B8C918 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 85 4e-15 UniRef50_A5DVM6 Putative uncharacterized protein n=1 Tax=Loddero... 85 4e-15 UniRef50_Q8II27 RNA (Uracil-5-)methyltransferase, putative n=4 T... 85 5e-15 UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 84 6e-15 UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desul... 84 6e-15 UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimo... 84 7e-15 UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 84 7e-15 UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 84 7e-15 UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geoba... 84 8e-15 UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 84 8e-15 UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 84 8e-15 UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 ... 84 8e-15 UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(... 84 9e-15 UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna R... 84 1e-14 UniRef50_A0YBC1 Putative uncharacterized protein n=1 Tax=marine ... 83 1e-14 UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimo... 83 1e-14 UniRef50_A9NFK1 RNA methyltransferase, TrmA family n=1 Tax=Achol... 83 1e-14 UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desul... 82 2e-14 UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacil... 82 2e-14 UniRef50_A1SSB8 23S rRNA (uracil-5-)-methyltransferase rumA n=2 ... 82 2e-14 UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopisciu... 82 2e-14 UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=N... 82 2e-14 UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81... 82 2e-14 UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=... 82 2e-14 UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacte... 82 3e-14 UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spiro... 82 3e-14 UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 ... 82 3e-14 UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepI... 82 3e-14 UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 82 3e-14 UniRef50_D1VSU9 RNA methyltransferase n=1 Tax=Peptoniphilus lacr... 82 3e-14 UniRef50_B6KDA8 tRNA (Uracil-5-)-methyltransferase domain-contai... 82 4e-14 UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Corio... 82 4e-14 UniRef50_Q72VP7 Uncharacterized RNA methyltransferase LIC_10249 ... 82 4e-14 UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Ta... 82 4e-14 UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2... 81 5e-14 UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotom... 81 5e-14 UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desul... 81 6e-14 UniRef50_B1ZVF8 RNA methyltransferase, TrmA family n=1 Tax=Opitu... 81 6e-14 UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaer... 81 7e-14 UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 ... 81 7e-14 UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteri... 81 7e-14 UniRef50_A5IZA4 Hypothetical RNA methyltransferase n=2 Tax=Mycop... 81 8e-14 UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protei... 80 8e-14 UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clost... 80 8e-14 UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinel... 80 8e-14 UniRef50_A7HAH0 (Uracil-5)-methyltransferase n=4 Tax=Anaeromyxob... 80 8e-14 UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntr... 80 1e-13 UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethi... 80 1e-13 UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=... 80 1e-13 UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococ... 80 1e-13 UniRef50_UPI000196C3B9 hypothetical protein CATMIT_02351 n=1 Tax... 80 1e-13 UniRef50_Q29DJ3 GA17699 n=7 Tax=Drosophila RepID=Q29DJ3_DROPS 80 2e-13 UniRef50_A5CXB2 RNA methyltransferase, TrmA family n=2 Tax=Gamma... 80 2e-13 UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 ... 79 2e-13 UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostri... 79 2e-13 UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collins... 79 2e-13 UniRef50_B5JSQ3 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=g... 79 2e-13 UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=13... 79 2e-13 UniRef50_A1RGE6 23S rRNA (uracil-5-)-methyltransferase rumB n=17... 79 2e-13 UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n... 79 2e-13 UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14... 79 3e-13 UniRef50_UPI0000E0E6C1 23S rRNA (uracil-5)-methyltransferase, re... 79 3e-13 UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chrom... 79 3e-13 UniRef50_C6R4A2 23S rRNA-methyltransferase RumB n=2 Tax=Micrococ... 79 3e-13 UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydro... 79 3e-13 UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Achol... 79 4e-13 UniRef50_C7RGV6 RNA methyltransferase, TrmA family n=4 Tax=Anaer... 79 4e-13 UniRef50_B2UQE8 RNA methyltransferase, TrmA family n=4 Tax=Verru... 78 4e-13 UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacte... 78 4e-13 UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 78 4e-13 UniRef50_Q821Q5 Uncharacterized RNA methyltransferase CCA_00883 ... 78 5e-13 UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clost... 77 7e-13 UniRef50_Q4PA00 Putative uncharacterized protein n=1 Tax=Ustilag... 77 8e-13 UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=... 77 8e-13 UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25... 77 9e-13 UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=... 77 9e-13 UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=1... 77 9e-13 UniRef50_Q5UQK3 Putative RNA methyltransferase R405 n=1 Tax=Acan... 77 1e-12 UniRef50_D1J8P5 Putative uncharacterized protein n=1 Tax=Mycopla... 77 1e-12 UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=D... 77 1e-12 UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdema... 76 1e-12 UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1... 76 2e-12 UniRef50_D2NR03 SAM-dependent methyltransferase related to tRNA ... 76 2e-12 UniRef50_B7GDX8 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 76 2e-12 UniRef50_C8X3P2 (Uracil-5)-methyltransferase n=1 Tax=Desulfohalo... 76 2e-12 UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicu... 76 2e-12 UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteri... 76 2e-12 UniRef50_B5RIS0 FI05218p (Fragment) n=8 Tax=melanogaster subgrou... 76 2e-12 UniRef50_B7PPI6 tRNA uracil-5-methyltransferase, putative (Fragm... 76 2e-12 UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttle... 76 2e-12 UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19... 76 2e-12 UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 76 2e-12 UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostri... 75 3e-12 UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 ... 75 3e-12 UniRef50_O58994 Uncharacterized RNA methyltransferase PH1259 n=8... 75 3e-12 UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzym... 75 3e-12 UniRef50_C8QZ82 RNA methyltransferase, TrmA family n=1 Tax=Desul... 75 3e-12 UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 75 3e-12 UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusob... 75 3e-12 UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacte... 75 3e-12 UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 75 3e-12 UniRef50_B4RXM8 RNA methyltransferase, TrmA family protein n=1 T... 75 3e-12 UniRef50_A5V044 (Uracil-5)-methyltransferase n=5 Tax=Chloroflexa... 75 3e-12 UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780... 75 3e-12 UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desul... 75 3e-12 UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veill... 75 4e-12 UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=... 75 4e-12 UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostri... 75 4e-12 UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bactero... 75 4e-12 UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 75 4e-12 UniRef50_Q1D5V4 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 75 4e-12 UniRef50_A5EXR9 23S rRNA methyltransferase n=1 Tax=Dichelobacter... 75 5e-12 UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 ... 75 5e-12 UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n... 75 5e-12 UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopo... 75 6e-12 UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCM... 75 6e-12 UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=... 74 6e-12 UniRef50_Q09833 Uncharacterized RNA methyltransferase C4G8.07c n... 74 6e-12 UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=... 74 7e-12 UniRef50_Q73JF6 Uncharacterized RNA methyltransferase TDE_2619 n... 74 7e-12 UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=1... 74 8e-12 UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus Rep... 74 8e-12 UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 74 8e-12 UniRef50_C8NCJ6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 74 8e-12 UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacte... 74 9e-12 UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodo... 74 9e-12 UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6... 74 1e-11 UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=De... 74 1e-11 UniRef50_Q5R111 SAM-dependent methyltransferase related to tRNA ... 74 1e-11 UniRef50_B3L5E5 Putative uncharacterized protein n=2 Tax=Plasmod... 74 1e-11 UniRef50_Q54C42 Putative uncharacterized protein n=1 Tax=Dictyos... 73 1e-11 UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embr... 73 1e-11 UniRef50_A5DBA0 Putative uncharacterized protein n=2 Tax=Pichia ... 73 1e-11 UniRef50_A4RSF2 Predicted protein n=2 Tax=Ostreococcus RepID=A4R... 73 1e-11 UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 73 1e-11 UniRef50_C1XK03 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Me... 73 2e-11 UniRef50_UPI0001BC2D8B 23S rRNA methyluridine methyltransferase ... 73 2e-11 UniRef50_O54099 Uncharacterized RNA methyltransferase SCO5901 n=... 73 2e-11 UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 73 2e-11 UniRef50_Q6MEM7 Uncharacterized RNA methyltransferase pc0248 n=1... 73 2e-11 UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 T... 72 2e-11 UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein ... 72 2e-11 UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synec... 72 3e-11 UniRef50_Q31DJ1 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 72 3e-11 UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protei... 72 3e-11 UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petro... 72 3e-11 UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 72 3e-11 UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Rosebur... 72 4e-11 UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12... 72 4e-11 UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacte... 72 4e-11 UniRef50_B9XDW9 RNA methyltransferase, TrmA family n=1 Tax=bacte... 71 5e-11 UniRef50_C7R2N2 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 ... 71 5e-11 UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA ... 71 5e-11 UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1... 71 5e-11 >UniRef50_A5F4M4 tRNA (uracil-5-)-methyltransferase n=202 Tax=Gammaproteobacteria RepID=TRMA_VIBC3 Length = 369 Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust. Identities = 233/360 (64%), Positives = 294/360 (81%), Gaps = 2/360 (0%) Query: 9 EQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQT 68 E Y+AQLA+K+ RL++M +S EVF SPV++YRMRAEFRIWH+GDD+Y+I+F+Q+T Sbjct: 9 ELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQET 68 Query: 69 KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKL 128 + + RVD FPAAS LIN LM ++ ++ +P+LRHKLFQ+D+L+TLS + +VSLLYH++L Sbjct: 69 REKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQL 128 Query: 129 DDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSF 188 +EW A+AL+ L + N++LIGRA K K+ LD+DY+ E L V G+ +Y+QVENSF Sbjct: 129 SEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENSF 188 Query: 189 TQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAA 248 TQPNA + +MLEWA+D T+ SKGDLLELYCGNGNFSLALA+NF+RVLATE+AKPSV AA Sbjct: 189 TQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEAA 248 Query: 249 QYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ--GIDLKSYQCETIFVDPPRSGLD 306 Q+NIAAN I NVQIIRM+AEEFTQAM G REFNRL+ G+DL+SY+C TIFVDPPRSG+D Sbjct: 249 QFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGMD 308 Query: 307 SETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 +T KMVQ Y RILYISCNPETL +NL+ L +TH+V R ALFDQFPYTHHME GV+L K Sbjct: 309 IDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLERK 368 >UniRef50_A7MXY6 tRNA (uracil-5-)-methyltransferase n=78 Tax=Proteobacteria RepID=TRMA_VIBHB Length = 369 Score = 494 bits (1273), Expect = e-138, Method: Compositional matrix adjust. Identities = 232/360 (64%), Positives = 289/360 (80%), Gaps = 2/360 (0%) Query: 9 EQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQT 68 ++Y+ QLAEKV RL M AP++ EVF SP HYRMRAEFR+WH+G+DLY+I+F+Q+T Sbjct: 9 QRYQEQLAEKVERLNDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQET 68 Query: 69 KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKL 128 + + RVD FPAAS LIN LM ++ +++N LR KLFQ+D+L+TLS + +VSLLYH++L Sbjct: 69 REKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQL 128 Query: 129 DDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSF 188 D+EW + A+AL+ L + N+++IGRA K KI LD+DY+ E+L V G+ IY+QVENSF Sbjct: 129 DEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENSF 188 Query: 189 TQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAA 248 TQPN + +MLEWA+D T+ S GDLLELYCGNGNFSLALA+NFDRVLATE+AKPSV +A Sbjct: 189 TQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVSA 248 Query: 249 QYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ--GIDLKSYQCETIFVDPPRSGLD 306 QYNIAAN IDNVQI+R++AEEFTQA+ G REF RLQ G+DLKSY C TIFVDPPRSG+D Sbjct: 249 QYNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGMD 308 Query: 307 SETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 +T KMVQ Y RI+YISCNPETL +NL+ L +TH V R ALFDQFPYTHHME GVLL K Sbjct: 309 VDTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLERK 368 >UniRef50_A0KQR3 tRNA (uracil-5-)-methyltransferase n=93 Tax=Proteobacteria RepID=TRMA_AERHH Length = 377 Score = 490 bits (1261), Expect = e-137, Method: Compositional matrix adjust. Identities = 234/356 (65%), Positives = 280/356 (78%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKS 70 Y+AQL EK RL + A F+ EV SP HYRMRAEFRIWHDGDDLYH ++ TK Sbjct: 20 YQAQLDEKRERLCGLFADFTLPALEVHASPAEHYRMRAEFRIWHDGDDLYHCMYAPATKE 79 Query: 71 RIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDD 130 IRVD FP AS LINQLM ++ G+R +PVLR KLFQIDYL+T S Q VSLLYH+KL+ Sbjct: 80 IIRVDQFPTASRLINQLMPVLLEGLRPHPVLRRKLFQIDYLSTQSGQICVSLLYHRKLES 139 Query: 131 EWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQ 190 EW+Q AEAL+ LRA+ + LIGRA K KI L ++++ ERL V G++++Y+QVENSFTQ Sbjct: 140 EWQQAAEALQADLRAKGFELQLIGRAHKQKICLGEEFVIERLTVQGRQLVYKQVENSFTQ 199 Query: 191 PNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQY 250 PNAA+N QML WALDVTKGS+GDLLELYCGNGNFS+ALA+NF +VLATEIAKPSV +AQ+ Sbjct: 200 PNAAINEQMLGWALDVTKGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDSAQF 259 Query: 251 NIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETE 310 NIAAN +DN+ I+RM+AEEFT AM G REFNRL+G+DL +YQC TIFVDPPR+GLD T Sbjct: 260 NIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLGAYQCNTIFVDPPRAGLDDATV 319 Query: 311 KMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 K+VQ Y ILYISCNPETL N+ L +TH++ R ALFDQFP+THHME GV L K Sbjct: 320 KLVQDYDNILYISCNPETLQANMAVLGETHEIARFALFDQFPWTHHMEAGVYLKRK 375 >UniRef50_A8GYV6 tRNA (uracil-5-)-methyltransferase n=12 Tax=Gammaproteobacteria RepID=TRMA_SHEPA Length = 365 Score = 469 bits (1208), Expect = e-131, Method: Compositional matrix adjust. Identities = 215/356 (60%), Positives = 277/356 (77%), Gaps = 1/356 (0%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKS 70 Y+ QL K V+L+ + A F E F S +HYRMRAEFR+WH+G+DLY+ +FD++ S Sbjct: 11 YDVQLEAKCVKLKQLFADFDTPELETFSSEPAHYRMRAEFRVWHEGEDLYYYMFDKELNS 70 Query: 71 RIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDD 130 ++R D F ASELIN++M A++ ++ N +LRH+LFQID+L+TLS + +VSLLYHK+LD Sbjct: 71 KVRCDQFLPASELINKMMPALVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYHKQLDS 130 Query: 131 EWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQ 190 EW Q+A+ L+ L Q NV+LIGRA K KI D+D++ E L VAGK++ Y Q+ENSFTQ Sbjct: 131 EWEQQAKILKQTLSTQ-FNVNLIGRARKQKIIFDKDFVVESLNVAGKQLQYHQIENSFTQ 189 Query: 191 PNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQY 250 PN ++++MLEWA+D+TK S GDLLELYCGNGNFS+ALA+NF+RVLATE+AKPSV +AQY Sbjct: 190 PNGKVSVKMLEWAIDITKNSSGDLLELYCGNGNFSIALAQNFERVLATELAKPSVESAQY 249 Query: 251 NIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETE 310 NI N ++N+QIIRM+AE+FT+AM R F RL+GIDL SY C TIFVDPPR+GLD++T Sbjct: 250 NIKVNQVENLQIIRMSAEDFTEAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGLDADTV 309 Query: 311 KMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 K+VQ Y RI+YISCNP TL NL LS+THK+ R ALFDQFPYT HME GV L K Sbjct: 310 KLVQGYERIVYISCNPNTLIDNLAELSKTHKITRFALFDQFPYTDHMESGVFLEKK 365 >UniRef50_A6W3C7 tRNA (uracil-5-)-methyltransferase n=9 Tax=Gammaproteobacteria RepID=TRMA_MARMS Length = 366 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 196/368 (53%), Positives = 255/368 (69%), Gaps = 6/368 (1%) Query: 1 MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 M P+ + E YE QL +K L +MA S EVF S +HYRMRAEFRIWHDGDDLY Sbjct: 1 MRPDQIQPEMYEKQLQDKQAELAKLMATLSLPEMEVFASQPTHYRMRAEFRIWHDGDDLY 60 Query: 61 HIIFDQ-QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + +FD ++ IR D F AAS LIN+LM ++ VR+ PVLR+KLFQ+D+LTT + +A+ Sbjct: 61 YAMFDSADPRTPIRTDQFLAASRLINELMPKLLDAVRDVPVLRYKLFQVDFLTTTTGEAL 120 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 +SLLYHK +D EW + L +A A H IGR+ K K + +D++ E L V G++ Sbjct: 121 ISLLYHKPIDAEWNAAVQQLNNAFPA----CHFIGRSRKKKQIITRDFVMETLTVNGQKF 176 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATE 239 Y+QVENSFTQPNA ++ +MLEWALDVTK + GDLLE+YCGNGNFS+ LAR FDRV+ATE Sbjct: 177 HYQQVENSFTQPNAGISEKMLEWALDVTKEASGDLLEMYCGNGNFSIPLARRFDRVVATE 236 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR-LQGIDLKSYQCETIFV 298 I+K SV +AQ NIA N + NVQ+++MA+E+ + A+NG E + L + + V Sbjct: 237 ISKVSVNSAQLNIAINGMHNVQVVKMASEDVSAALNGDVELPKSLVQAGVSELTPSVVLV 296 Query: 299 DPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHME 358 DPPR+GLD T ++++ ILYISCNPETL NLE LS TH+V R A+FDQFPYTHH+E Sbjct: 297 DPPRAGLDDATVELIRKIDSILYISCNPETLKANLEALSNTHEVVRYAMFDQFPYTHHVE 356 Query: 359 CGVLLTAK 366 GV L K Sbjct: 357 TGVFLRRK 364 >UniRef50_Q31JA4 tRNA (uracil-5-)-methyltransferase n=5 Tax=Proteobacteria RepID=TRMA_THICR Length = 374 Score = 360 bits (925), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 188/372 (50%), Positives = 241/372 (64%), Gaps = 21/372 (5%) Query: 9 EQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQT 68 E Y Q AEK RL+ ++ + + F S HYR RAEFR+WH+GD +I+FDQQ+ Sbjct: 8 ETYAEQFAEKTHRLEQLLGDLPNF--DAFASEPEHYRARAEFRVWHEGDQTDYIMFDQQS 65 Query: 69 KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKL 128 K ++ + P A E I LM ++A + PVLR KLFQ+D+L TLS + +V+L+Y K L Sbjct: 66 KEKVAIHHCPMALESIATLMPKLMAHIVQTPVLRQKLFQVDFLATLSGEMLVTLIYRKSL 125 Query: 129 ----------DDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKE 178 D W A ALR L H+IGRA K KI LD+DY+ E+L V + Sbjct: 126 QTKTETGVENDVAWVDAANALRCELPI----THIIGRARKQKICLDKDYVIEKLQVDHQT 181 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGS----KGDLLELYCGNGNFSLALARNFDR 234 IY+Q+ENSFTQPNA M ML WA V + + DL+ELYCGNG+FS+AL+ F R Sbjct: 182 FIYQQIENSFTQPNAEMAQNMLHWARKVAAKANPDQQNDLIELYCGNGHFSIALSDQFHR 241 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 VLATEI+K SVA+AQ+NI AN +DNV +++MAAEE + A+ G F RL+ IDL +Y Sbjct: 242 VLATEISKTSVASAQFNIEANKVDNVTVVKMAAEEISAALQG-ETFFRLKDIDLSAYAFN 300 Query: 295 TIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYT 354 TIFVDPPRSGLD T +MV + I+YISCNPETL +LE + QTH+V ALFDQFPYT Sbjct: 301 TIFVDPPRSGLDDLTRQMVTEFDYIIYISCNPETLAHDLEAIRQTHEVLETALFDQFPYT 360 Query: 355 HHMECGVLLTAK 366 HH+E GV L K Sbjct: 361 HHIESGVFLKRK 372 >UniRef50_A5EXH9 tRNA (uracil-5-)-methyltransferase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=TRMA_DICNV Length = 361 Score = 339 bits (869), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 171/361 (47%), Positives = 241/361 (66%), Gaps = 10/361 (2%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQ---Q 67 Y+ QL K +L +++ PFS ++ SP HYRMRAEFRIW D + L++ + Sbjct: 6 YQRQLFAKHQQLHALLRPFSAPKIRIYPSPEKHYRMRAEFRIWRDDEQLFYAMSRGGALT 65 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK 127 ++ +R+ +FP A I++ M ++ +R +PVL HKL+++ +L +L + +VSL+YH+ Sbjct: 66 AQNIVRLHNFPPAYITIDRCMPLLLDALRADPVLHHKLYEVHFLASLRGELLVSLIYHRA 125 Query: 128 LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENS 187 L DEW A+AL A+ ++ LIGR+ K KI L++D+I E L V G+ Y Q E S Sbjct: 126 LTDEWTAAAKAL-----AKRFHILLIGRSRKQKITLERDFILETLNVDGRAFHYHQYEQS 180 Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAA 247 F+QPNA + +ML WA + GDLLELYCGNGNF+L LA +F RVLATEI+K S+ A Sbjct: 181 FSQPNAYVCQKMLRWACAQAGENAGDLLELYCGNGNFTLPLASHFRRVLATEISKSSITA 240 Query: 248 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ--GIDLKSYQCETIFVDPPRSGL 305 Q NI N +N+ + R++AEEFTQA R+F RL+ GI+L YQ ET+FVDPPR+G+ Sbjct: 241 LQENIFLNQTNNIAVARLSAEEFTQAWQKERDFYRLKQAGIELADYQFETVFVDPPRAGI 300 Query: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 D T ++Q +P+I+YISCNP TL NL+TL+QTH++ ALFDQFP T H+ECGV+L Sbjct: 301 DDNTLFLLQKFPKIIYISCNPHTLAANLQTLTQTHELCAAALFDQFPDTPHIECGVVLRK 360 Query: 366 K 366 K Sbjct: 361 K 361 >UniRef50_A4BHH3 TRNA (Uracil-5-)-methyltransferase n=1 Tax=Reinekea blandensis MED297 RepID=A4BHH3_9GAMM Length = 362 Score = 336 bits (862), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 163/363 (44%), Positives = 242/363 (66%), Gaps = 7/363 (1%) Query: 3 PEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHI 62 P +QY+ QLA+K RL+ ++ + +F S +HYRMRAEFR WH+G+ Y+ Sbjct: 2 PFPFAPDQYDRQLADKTDRLKVLLDAWDHPELNIFSSTSAHYRMRAEFRFWHEGERSYYA 61 Query: 63 IF-DQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVS 121 +F + ++ + V FP A+EL N LMT + V +P LR++LFQ+++LTT S A+++ Sbjct: 62 MFRPEDRRTPVEVVDFPVATELCNDLMTKVRNAVHEDPELRNRLFQVEFLTTQSGDALIT 121 Query: 122 LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIY 181 L+YH++LD W + A + + +IGRA K ++ LD+DY+ E L + G++ + Sbjct: 122 LIYHRQLDSNWEERARYWQ-----EQWGYPVIGRARKLRLVLDRDYVTETLSILGRDFHF 176 Query: 182 RQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELYCGNGNFSLALARNFDRVLATEI 240 Q ENSFTQPNA + QM++WA++ ++G + DLLELYCGNGNFS+ LA+NF RVL TEI Sbjct: 177 HQYENSFTQPNAGVCEQMIQWAVEHSQGRESADLLELYCGNGNFSIPLAQNFRRVLGTEI 236 Query: 241 AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP 300 ++ SV +AQ NIA N +DNV I RMA+E+ ++A R + + Y +TI VDP Sbjct: 237 SRTSVKSAQENIALNQVDNVSIARMASEDLSKAWLHNEPNRRFREFRIDDYDFDTILVDP 296 Query: 301 PRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECG 360 PR+GLD +T ++++ + RI+YISCNPE++ KN+E L +++ ALFDQFPYTHHME G Sbjct: 297 PRAGLDEDTVELLKKFRRIIYISCNPESMVKNIEALRGQYRMTATALFDQFPYTHHMEAG 356 Query: 361 VLL 363 V+L Sbjct: 357 VIL 359 >UniRef50_A4RUE5 Predicted protein n=8 Tax=cellular organisms RepID=A4RUE5_OSTLU Length = 418 Score = 334 bits (857), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 168/373 (45%), Positives = 233/373 (62%), Gaps = 21/373 (5%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVP--EVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQ- 66 Y+ +L EK ++ + L E F S +RMRAEF++WHDGD Y + D Sbjct: 50 SYDEELREKTAHARAHFDGVATLPSRTETFESAREEFRMRAEFKVWHDGDRSYFAMCDSD 109 Query: 67 QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHK 126 + K + V FP AS I +LM ++ V LR KLFQ ++LTT + AVVSLLYH+ Sbjct: 110 RPKDPVEVVDFPMASARIRELMPELLREVTATETLRRKLFQANFLTTTTGDAVVSLLYHR 169 Query: 127 KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVEN 186 +LD++W +EAEA+R L + +IGRA K K+ L +D++ E++ + GKE Y+Q+E Sbjct: 170 QLDEDWEREAEAMR-----ARLGIDVIGRARKQKLVLAKDFVTEKVLIDGKEFSYKQLEG 224 Query: 187 SFTQPNAAMNIQMLEWALDVT-------------KGSKGDLLELYCGNGNFSLALARNFD 233 SFTQPNA + QML WA + + D LELYCGNG+F++ALA F Sbjct: 225 SFTQPNAGIAAQMLAWARSAAVSDSPDVVAAATPRDANRDFLELYCGNGHFTIALAPLFR 284 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 + LATEI+K SVAAA N+AAN IDNV R++AEE A++G RE+ RL+ IDL +Y Sbjct: 285 KCLATEISKSSVAAAHVNMAANGIDNVVTARLSAEELCDALDGGREYTRLKDIDLTTYDL 344 Query: 294 ETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPY 353 T+ VDPPR+G+ E K + RI+YISCNPETL ++ + L +TH+++R A+FDQFPY Sbjct: 345 STVLVDPPRAGMGDEVSKFCARFDRIIYISCNPETLARDCKILGETHEIKRFAVFDQFPY 404 Query: 354 THHMECGVLLTAK 366 T H+E G LL + Sbjct: 405 TPHLESGALLVKR 417 >UniRef50_A8HPV8 tRNA (Uracil-5-)-methyltransferase (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8HPV8_CHLRE Length = 364 Score = 334 bits (856), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 169/365 (46%), Positives = 236/365 (64%), Gaps = 13/365 (3%) Query: 9 EQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQT 68 E Y+ QL K+ +L+ + F EVF SP +HYRMR+EF + L+ + Sbjct: 6 EDYDGQLDRKLTKLKQLFQEFDPPQLEVFTSPPTHYRMRSEFTVEQRDGPLHFKGGKPKG 65 Query: 69 KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKL 128 R+RVD+FP A++ +N+LM + P LR +LFQ+++ TTL+ A+V+LLYH+KL Sbjct: 66 PRRVRVDTFPVATKQVNELMAVVREEADKTPELRQRLFQVNFHTTLAGDAMVTLLYHRKL 125 Query: 129 DDEWRQEAEALRDALRAQ------NLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYR 182 EW+ AE LRDAL A + H+IGR+ K KI LD D++ ERL V G+ + + Sbjct: 126 GPEWQAAAERLRDALAATPTAAAAGVRPHVIGRSRKQKIALDADFVLERLTVGGRTFVQK 185 Query: 183 QVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAK 242 QVE SF+QPN + ML WA D DLLELYCGNGNF++ L+ NF RV+ATE+AK Sbjct: 186 QVEGSFSQPNGHVCQHMLTWAQD------DDLLELYCGNGNFTIPLSANFRRVVATEVAK 239 Query: 243 PSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID-LKSYQCETIFVDPP 301 SV AA+YN+ AN + NV + RMA+EEF M RL+G++ ++ + TI VDPP Sbjct: 240 SSVEAARYNMEANGVSNVFLARMASEEFAVTMRERGSRRRLEGLEGWEALRLRTILVDPP 299 Query: 302 RSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGV 361 R+GLD T ++++ + RI+YISCNP+TLC NL+ ++ TH++ R A FDQFPYTHH+ECGV Sbjct: 300 RAGLDDFTVELLKEFDRIVYISCNPDTLCANLKAIAPTHRIARFAAFDQFPYTHHLECGV 359 Query: 362 LLTAK 366 L + Sbjct: 360 YLVRR 364 >UniRef50_C1E3C6 Predicted protein n=2 Tax=Micromonas RepID=C1E3C6_9CHLO Length = 459 Score = 327 bits (838), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 167/349 (47%), Positives = 221/349 (63%), Gaps = 22/349 (6%) Query: 35 EVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQ-TKSRIRVDSFPAASELINQLMTAMIA 93 EV S S++RMRAEFR+WHDGD Y +FD K+ I V SFP SE IN+LM A I Sbjct: 114 EVHESARSNFRMRAEFRVWHDGDRSYLAMFDSDDPKTPIEVPSFPMGSEKINELMPAFIE 173 Query: 94 GVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLD-DEWRQEAEALRDALRAQNLNVHL 152 + + V+R KLFQ+++LTT+ A++S+LYHK + DEW EAE +R Q L V + Sbjct: 174 EIGRSEVIRRKLFQVNFLTTMKGDALISMLYHKPVKTDEWELEAEKMR-----QRLGVSI 228 Query: 153 IGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG 212 IGR+ K K+ L DY+ E + V G+ + Y+Q+E FTQPNA ++ +MLEWA Sbjct: 229 IGRSRKQKVVLGNDYVMEEIEVDGRVLTYKQLEGGFTQPNAGISAKMLEWARSAAVSDSA 288 Query: 213 D--------------LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHID 258 D LLELYCGNGNF++A+A F VLATE++K SVAAA+ N AN Sbjct: 289 DAVGEAAAPARRNDDLLELYCGNGNFTIAMAPMFRAVLATEVSKVSVAAAKLNADANGAG 348 Query: 259 NVQIIRMAAEEFTQAMNGVREFNRLQGID-LKSYQCETIFVDPPRSGLDSETEKMVQAYP 317 NV R+++EE T A++ ++F RL + L+SY T+ VDPPR+G+ E V + Sbjct: 349 NVAFARLSSEELTLALDQGKQFARLDDVPPLESYDLRTVLVDPPRAGMGEEVSTFVSRFD 408 Query: 318 RILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 RI+YISCNPETL ++ TL TH+V R A FDQFPYT H+ECG LL AK Sbjct: 409 RIVYISCNPETLAADVRTLRDTHEVARFAAFDQFPYTPHLECGALLIAK 457 >UniRef50_A6QBC0 tRNA (uracil-5-)-methyltransferase n=4 Tax=Epsilonproteobacteria RepID=TRMA_SULNB Length = 371 Score = 326 bits (835), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 161/363 (44%), Positives = 235/363 (64%), Gaps = 7/363 (1%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 L + Y QL K R+ +++PF E+F SP S YR RAEFRIWH+ + + + + Sbjct: 14 LYNQNYTQQLQLKEQRVSELLSPFYTGELELFDSPDSRYRARAEFRIWHESERCDYAMGN 73 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVR-NNPVLRHKLFQIDYLTTLSNQAVVSLLY 124 + K + ++ P E I + M ++ + + VL+ +LF +++L T +++ +V++LY Sbjct: 74 IEKKGAVTIEECPKVIEPIEKRMWKLLEKINASQEVLKQRLFAVEFLATTTDECLVTMLY 133 Query: 125 HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQV 184 H+KLD+ W +EA+ L + LN ++GR+ K K+ L +++ E L + GKE Y Q Sbjct: 134 HRKLDEAWSEEAKMLE-----RELNCRVMGRSRKQKVILSDEFVTETLEIDGKEFTYVQY 188 Query: 185 ENSFTQPNAAMNIQMLEWAL-DVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKP 243 E+ FTQPN A+N++M+EWA+ K GD LE YCG GNF+L L+ FD VLATEI+K Sbjct: 189 ESGFTQPNPAVNVKMIEWAIWQAKKVGYGDFLESYCGLGNFTLPLSHYFDNVLATEISKR 248 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 S+ AA N N ++N+ R+A+EE T+A+NGVREF+RL+GIDLKSY T+ VDPPR+ Sbjct: 249 SIHAALQNCELNAVENITFARLASEEMTEALNGVREFSRLKGIDLKSYDFSTVLVDPPRA 308 Query: 304 GLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 GLD T +++ I+YISCNPETL ++LETL +TH V ALFDQFP+T H+E GV L Sbjct: 309 GLDEGTIELISNIDNIIYISCNPETLARDLETLIKTHTVMEAALFDQFPHTEHVESGVFL 368 Query: 364 TAK 366 K Sbjct: 369 QKK 371 >UniRef50_A8EWU8 tRNA (uracil-5-)-methyltransferase n=3 Tax=Campylobacterales RepID=TRMA_ARCB4 Length = 375 Score = 317 bits (813), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 153/362 (42%), Positives = 242/362 (66%), Gaps = 9/362 (2%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHD-GDDLYHII- 63 L + YE QL K+ R + + F+++ ++ +S S++R RAEFRIW + G++ I+ Sbjct: 14 LFDKTYEEQLNYKIQREKERFSNFTNIDFDIIKSNESNFRNRAEFRIWWEKGENNKEILS 73 Query: 64 --FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVS 121 + K+ ++++S S I +LM +I ++N+ L KLF +++L + + +V+ Sbjct: 74 YAMNDFKKNILKINSCEMVSFHIKELMPKLIDELQNDLELSFKLFAVEFLGSSTKDMLVT 133 Query: 122 LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIY 181 L+YHKKL++ W Q+A+ + + LN+ +IGR+ K ++ L DYI+E L ++ + + Sbjct: 134 LIYHKKLEESWIQKAKEIE-----KKLNIKIIGRSKKQRLVLTNDYINETLNISNQNFFF 188 Query: 182 RQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIA 241 EN FTQPN +N+QM+EW L+ TK S DL ELYCG GNF++ L+ F +VLATEI+ Sbjct: 189 AYEENGFTQPNTNVNVQMIEWVLENTKNSSKDLCELYCGGGNFTIPLSTKFRKVLATEIS 248 Query: 242 KPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPP 301 K S+ +A N + N I+++ IRM+AE+F QA+N VR FNRL+ I+L Y+ +TIF+DPP Sbjct: 249 KTSIKSALRNCSLNKIESISFIRMSAEDFVQALNKVRAFNRLKDINLDDYEFDTIFMDPP 308 Query: 302 RSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGV 361 RSGLD T + + + I+YISCNPETL ++LE L++TH++E+ ALFDQF +T+H+E GV Sbjct: 309 RSGLDDTTRNLAKDFENIIYISCNPETLHRDLEELTKTHEIEKFALFDQFAFTNHIESGV 368 Query: 362 LL 363 +L Sbjct: 369 IL 370 >UniRef50_A4A8C7 tRNA (Uracil-5-)-methyltransferase n=4 Tax=Gammaproteobacteria RepID=A4A8C7_9GAMM Length = 373 Score = 310 bits (794), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 163/361 (45%), Positives = 223/361 (61%), Gaps = 8/361 (2%) Query: 1 MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 M P E Y A+K ++ M E F SPV YR+RAEFRIWHDGDD+ Sbjct: 1 MLPWQTDPENYATLFAKKCSDVEKDMLTLRLPPAERFASPVESYRVRAEFRIWHDGDDID 60 Query: 61 HIIFDQ-QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 +++FD ++ + + F A I LM ++A +++ PVLR KLFQ +++ T + + + Sbjct: 61 YVMFDPGHPRTPVVIKDFAPALAPIRTLMPQLLAFLKSRPVLRRKLFQAEFMATTTGELL 120 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 ++L+YH+ LDD W EA AL A+ +V L+GR+ K K + +D++ + V G+ Sbjct: 121 LTLIYHRPLDDAWEDEARAL-----AREFDVSLVGRSRKQKRIIGRDFVVDAFTVDGRCY 175 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATE 239 YRQ E SF QPNA +N ML WA GDLLELYCGNGNF+L LA F V+ATE Sbjct: 176 RYRQYEQSFVQPNAPINEAMLTWAWQQGASCPGDLLELYCGNGNFTLPLASRFPAVIATE 235 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI--DLKSYQCETIF 297 ++K AA NI N +DNVQ+IR++AEE ++AM+GVREF RL + L Y T+F Sbjct: 236 LSKSGTRAALENIRDNGVDNVQVIRLSAEEVSEAMSGVREFRRLATLPKPLGDYDLRTVF 295 Query: 298 VDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHM 357 VDPPR+GLD T V+ + ILY+SCNP+TL N+E L+ +H V ALFDQFPYT H+ Sbjct: 296 VDPPRAGLDPGTLDCVRDFEAILYVSCNPKTLKSNIEALTDSHVVTHYALFDQFPYTPHI 355 Query: 358 E 358 E Sbjct: 356 E 356 >UniRef50_A6DAM4 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAM4_9PROT Length = 363 Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 142/355 (40%), Positives = 217/355 (61%), Gaps = 15/355 (4%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKS 70 YE QL K +L+ M + F EV H+R RAEFR+WH+GD Y+ + ++ + Sbjct: 19 YEEQLKMKKDKLKEMFSKFEIPEIEVIYDKDEHFRARAEFRVWHEGDKTYYAMRKRKEEG 78 Query: 71 R--IRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKL 128 R I ++ + I +LM +++ + N LR KL+++ +L+ + +V+L+YH+K+ Sbjct: 79 RGVIPIEECKIVDKAIYELMPKLMSEIEKNQNLRLKLYEVHFLSNSKGEVIVTLIYHRKV 138 Query: 129 DDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSF 188 D+ ++ + L+D + NV I R K D++Y+ E L + GK Y+ +EN+F Sbjct: 139 DESIAEDIKRLKDKFK----NVDFIVRKKGRKYIFDKNYLIEELEIKGKTYKYKIIENTF 194 Query: 189 TQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAA 248 TQPN +N +M+ W LD T KGDL+ELYCGNGNF++ L+ NF +V+ATEI S+ AA Sbjct: 195 TQPNREINKKMISWVLDNTSNLKGDLVELYCGNGNFTIPLSENFRKVVATEINPESIEAA 254 Query: 249 QYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSE 308 YN N+ N+ + M+A EF++ + FN SY + + +DPPR+GLD + Sbjct: 255 TYNAEINNRKNISFLAMSAAEFSE-LKKTGFFN--------SYDLKNVLIDPPRAGLDEK 305 Query: 309 TEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 + K V + I+YISCNPETL ++LETLS+ K++ A FDQFPYT+HMECGV+L Sbjct: 306 SRKFVNEFDNIIYISCNPETLKRDLETLSKNRKIKAFAFFDQFPYTNHMECGVVL 360 >UniRef50_C5EY89 tRNA (Uracil-5-)-methyltransferase n=3 Tax=Helicobacter RepID=C5EY89_9HELI Length = 369 Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 142/357 (39%), Positives = 218/357 (61%), Gaps = 13/357 (3%) Query: 12 EAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHII-----FDQ 66 E L K+ R +M+ F + EVF S +R R E I+H + + + + F Sbjct: 17 EYSLESKIARASAMLG-FQNF--EVFGSQEVSFRARCELGIYHKENKIIYTMRKGRQFVP 73 Query: 67 QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHK 126 I VD+ A +++ +++ G R KLF I+ L+T + +++L+YHK Sbjct: 74 IQNCPILVDNLQAFLQVLKEVLNDDFFGD-----FREKLFAIEALSTQMDTILLTLIYHK 128 Query: 127 KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVEN 186 KL+D+W + A ++ L + + + ++GR+ KI +D+D++ E L V K YR E Sbjct: 129 KLNDKWLEIARVFKEVLEKRGIKLEVVGRSRGVKIVVDKDFVIEELKVGKKGYFYRYDEG 188 Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVA 246 +F+QPN +N +ML+WA+D K S DLLE+YCG GNF++ + F +VLATEI+K S+ Sbjct: 189 AFSQPNPKVNEKMLKWAMDSLKRSDEDLLEMYCGCGNFTIPFSEKFRKVLATEISKTSIR 248 Query: 247 AAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD 306 AA++ N +N++ +R+ A+E +A+ GVREF RL+GI L+ Y ++FVDPPR+GL Sbjct: 249 AAKFACEKNQRNNIKFVRLNAQECIEALEGVREFRRLEGIRLQDYCFSSVFVDPPRAGLG 308 Query: 307 SETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 E + +Q + ILYISCNP TL K+LE L QTHK+ ++A FDQFP+T H+E GVLL Sbjct: 309 EEVSRFLQRFQNILYISCNPSTLAKDLEILKQTHKISKVAFFDQFPHTPHLESGVLL 365 >UniRef50_B9LA97 tRNA (uracil-5-)-methyltransferase n=1 Tax=Nautilia profundicola AmH RepID=TRMA_NAUPA Length = 365 Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 133/355 (37%), Positives = 214/355 (60%), Gaps = 13/355 (3%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKS 70 Y+ QL K +L+ M + F EV H+R RAEFR+WH+GD Y+ + ++ Sbjct: 19 YDEQLKMKSEKLKEMFSEFDMPEIEVVHGSDEHFRARAEFRVWHEGDKSYYAMRKRKEDG 78 Query: 71 R--IRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKL 128 R I ++ + I +MT ++ + N LR KL++ID+L+ + +++L+YHKK+ Sbjct: 79 RGVIPIEECKIVDKAIYDIMTPLLKEIEKNDNLRFKLYEIDFLSNSKGELIITLIYHKKV 138 Query: 129 DDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSF 188 D+ ++ + L++ + N I R K D++Y+ E L + K Y+ +EN+F Sbjct: 139 DESIAEDIKKLKEKFK----NADFIVRKKGRKYVFDKNYLIEELNINSKTYKYKIIENTF 194 Query: 189 TQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAA 248 +QPN MN +M+EWA+ ++ KGDL+ELYCGNGNF++ L+ F++V+ATEI+K S+ AA Sbjct: 195 SQPNRQMNQKMIEWAMRNSEDLKGDLVELYCGNGNFTIPLSERFNKVIATEISKESIEAA 254 Query: 249 QYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSE 308 YN N DN+ + M+A EF++ + Y + I +DPPR+GLD + Sbjct: 255 TYNAEINARDNITFLAMSAAEFSKLYKDRSPL-------ITKYDLKNILIDPPRAGLDDK 307 Query: 309 TEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 + + V + I+YISCNPETL ++L+TL++ +++ A FDQFPYT+H ECGV+L Sbjct: 308 SREFVNEFDNIIYISCNPETLQRDLKTLAKGREIKAFAFFDQFPYTNHAECGVIL 362 >UniRef50_UPI00003979FC COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase n=1 Tax=Actinobacillus pleuropneumoniae serovar 1 str. 4074 RepID=UPI00003979FC Length = 229 Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 130/227 (57%), Positives = 168/227 (74%), Gaps = 5/227 (2%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDD-----L 59 +LP EQY LAEK L +++APF+ EVF S H+RMRAEFR+WHD ++ L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETGHFRMRAEFRVWHDTNEVGENEL 61 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 YHI+FDQ+TK R V+ FP A+ LIN++M++++A ++ N +L KLFQ+DYL+TLS + Sbjct: 62 YHIMFDQETKQRYCVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 VS+LYHKKL++EW+ EA AL+ L Q V +IGRATK KI LD+DY++E LPV G+ + Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSL 226 IYRQVENSFTQPNA MNI+MLEWA T+ S GDLLELYCGNG F L Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGIFRL 228 >UniRef50_C5ZX30 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Helicobacter canadensis MIT 98-5491 RepID=C5ZX30_9HELI Length = 370 Score = 264 bits (674), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 127/322 (39%), Positives = 206/322 (63%), Gaps = 6/322 (1%) Query: 44 YRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV--L 101 +R R E I+ D + + + ++ K + +++ E + + + + + Sbjct: 46 FRARCELGIFFKDDKINYAM--RKGKQFVCIENCCNLLESLQKFLPVLKKKLNQEFFKDF 103 Query: 102 RHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI 161 R KLF I+ L+T +++ +++L+YHKKL++ W + A+ L+ AL Q V +IGR+ K+ Sbjct: 104 RQKLFAIEVLSTQNDEILLTLIYHKKLNETWLENAKELKKAL--QEFRVEIIGRSKGVKL 161 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGN 221 +++DY+ E+L + GK+ YR E +FTQPN +N +M+EW L SKGDLLE+YCG Sbjct: 162 IVEKDYVVEKLEIDGKKYYYRYDEGAFTQPNPKINEKMIEWVLQNISQSKGDLLEMYCGC 221 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 GNF++ L++ F +VLATEI+K S+ AA++ N +N+ +R++ +E +A+ G+R+FN Sbjct: 222 GNFTIPLSQKFRKVLATEISKVSIRAAKFACQRNGCNNITFVRLSGQECIEAIEGIRKFN 281 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHK 341 RL+ I+L+ Y I VDPPR GL E + +Q + ILYISCNP +L K+L+ LSQTH+ Sbjct: 282 RLEQINLEEYDFSMILVDPPRGGLGEEVCRFLQNFSSILYISCNPLSLAKDLKILSQTHR 341 Query: 342 VERLALFDQFPYTHHMECGVLL 363 + + A FDQFP+T H+E G+LL Sbjct: 342 IVKAAFFDQFPHTSHLETGILL 363 >UniRef50_C6RGK1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Campylobacter showae RM3277 RepID=C6RGK1_9PROT Length = 377 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 140/361 (38%), Positives = 212/361 (58%), Gaps = 11/361 (3%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHD----GDDLYHIIFDQ 66 YE Q+ K ++ PF E F S + YR RAEF IWHD DL + + Sbjct: 21 YEEQVKFKTDFIRREFEPFYSGEFEFFASQSAAYRTRAEFGIWHDIWHSAVDLAYTMHGA 80 Query: 67 QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHK 126 +TK RI +D P + I LM ++ + N +L+ +LF ++++ S + +LLYHK Sbjct: 81 KTK-RIMIDECPKVAAPIANLMPRLLEALAKNQILKERLFGAEFISCASG-ILATLLYHK 138 Query: 127 KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVEN 186 +L + + E E+L AL+ +L V + RA K+ + + + L + GK + + Sbjct: 139 RLGEAEQSEIESL--ALKFADLRVTIAARAKGQKLLSGELNLQDSLNIGGKIYKFTFGDG 196 Query: 187 SFTQPNAAMNIQMLEWALD-VTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 +F QPN A+N +M+ WA V +G+ DLLELYCG+GNF++ ++ F RVLATEI+K S+ Sbjct: 197 AFIQPNTAVNEKMIAWAKRCVERGA--DLLELYCGHGNFTVPMSEKFKRVLATEISKSSI 254 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A A N N ++N++ +RM+AEE A REFNRL+ +D+ SY + VDPPR+GL Sbjct: 255 ANALKNCELNGVNNIEFLRMSAEELMSAFRREREFNRLRELDIFSYDFSHVLVDPPRAGL 314 Query: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 D ++ Y I+YISC+P++L ++L L+ TH+ + A+FDQF T H+ECGVLL Sbjct: 315 DESVINFIKNYENIIYISCSPQSLKRDLTQLAATHEAVKFAVFDQFANTTHIECGVLLKG 374 Query: 366 K 366 K Sbjct: 375 K 375 >UniRef50_B9D5E5 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Campylobacter rectus RM3267 RepID=B9D5E5_WOLRE Length = 374 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 135/357 (37%), Positives = 207/357 (57%), Gaps = 7/357 (1%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKS 70 YE Q+ K ++ PF E F S + YR RAEF IW +G++L + + + K Sbjct: 21 YEEQVEFKKGFIRREFEPFYSGEFEFFASQKAGYRTRAEFGIWREGEELSYTMHGAKAK- 79 Query: 71 RIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDD 130 R+ +D P + I LM ++ + N +L+ KLF ++++ S + +LLYHK L Sbjct: 80 RVFIDECPKVAAPIANLMPRLLGALVKNQILKEKLFGAEFISCASG-ILATLLYHKHLGK 138 Query: 131 EWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQ 190 + E E+L V + RA K+ + + +RL + K + + +F Q Sbjct: 139 AEQGEIESLAREFVGHR--VTIAARAKGQKLLSGELNLQDRLNIGDKIYKFTFGDGAFIQ 196 Query: 191 PNAAMNIQMLEWALD-VTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQ 249 PN A+N +M+ WA V +G+ DLLELYCG+GNF++A+A F RVLATEI+K S+A A Sbjct: 197 PNTAVNEKMIAWAKGCVERGA--DLLELYCGHGNFTVAMAEKFKRVLATEISKSSIANAL 254 Query: 250 YNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET 309 N N ++N++ +RM+AEE A REFNRL+ +D+ SY + VDPPR+GLD+ Sbjct: 255 KNCELNGVNNIKFLRMSAEELISAFGREREFNRLRELDIFSYDFSHVLVDPPRAGLDASV 314 Query: 310 EKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++ Y I+YISC+P++L +++ L TH+ + A+FDQF T H+ECGVLL +K Sbjct: 315 INFIKNYENIVYISCSPQSLKRDMAQLDATHEAVKFAVFDQFANTAHIECGVLLRSK 371 >UniRef50_A1VZH5 tRNA (uracil-5-)-methyltransferase n=17 Tax=Campylobacteraceae RepID=TRMA_CAMJJ Length = 357 Score = 247 bits (630), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 133/351 (37%), Positives = 204/351 (58%), Gaps = 8/351 (2%) Query: 15 LAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRV 74 L EK ++ F ++F S HYR RAE +H+ D L++ +FD ++K + + Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 75 DSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQ 134 + A E I M ++ +R + L+ KLF +++LTT + V+LLYHK ++D + Sbjct: 72 EYLDFADEKICAFMPKLLEYLRQDDKLKEKLFGVEFLTT-KQELSVTLLYHKNIED-IKS 129 Query: 135 EAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAA 194 E L + NL+++LI R+ K+ + + + L + +++ Y + F QPN A Sbjct: 130 NLENL-----SNNLHINLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184 Query: 195 MNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIA 253 +N +M+ W ++ K DLLELYCG GNF+LALA F +VLATEI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244 Query: 254 ANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV 313 N+ N+ R+++EE + A+ REF RL+ I L + + VDPPR+GLD ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 314 QAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLT 364 + Y I+YISCNP TL +NL+ LS TH+VE ALFDQF T H+ECGV L+ Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLS 355 >UniRef50_A0RPL1 tRNA (uracil-5-)-methyltransferase n=4 Tax=Campylobacter RepID=TRMA_CAMFF Length = 367 Score = 245 bits (626), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 130/327 (39%), Positives = 200/327 (61%), Gaps = 9/327 (2%) Query: 37 FRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR 96 FRSP+S +R RAEF ++HD + L + + + +++D E I+ +M ++ ++ Sbjct: 47 FRSPISKFRSRAEFGLYHDDNSLSYTM-RRADGGYLKIDKCSIVDEKISVIMPVLLDLLK 105 Query: 97 NNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRA 156 N L+ KLF ++++TT ++ ++ LLYHK QE L+ L+ V LI R+ Sbjct: 106 ENQNLKAKLFGVEFITT-RDEILIILLYHKDAS-TIIQELTWLQSKLK-----VGLIARS 158 Query: 157 TKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLE 216 K+ ++E+L + GK Y + +F QPN +N M+ W LD T K DLLE Sbjct: 159 KGKKLVFGSSSLNEKLFINGKSYHYVFGDAAFIQPNRNINENMISWVLDHTTDCK-DLLE 217 Query: 217 LYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG 276 LYCG+GNF++ L+ F++VLATEI+K S+ +A N N +DN++ R++AEE +A Sbjct: 218 LYCGHGNFTIPLSFKFNKVLATEISKASINSALKNCELNGVDNIKFTRLSAEELMEAFLF 277 Query: 277 VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETL 336 R+F RLQ IDL+SY+ I VDPPR+G D ++ Y I+YISCNP TL +NL+ L Sbjct: 278 KRDFRRLQDIDLRSYEFSHILVDPPRAGCDKSVLDFIRNYENIIYISCNPLTLKENLKLL 337 Query: 337 SQTHKVERLALFDQFPYTHHMECGVLL 363 +TH V++ A+FDQF +T+H+EC V+L Sbjct: 338 CKTHSVDKFAIFDQFVHTNHIECAVVL 364 >UniRef50_Q7U326 tRNA (uracil-5-)-methyltransferase n=2 Tax=Helicobacter RepID=TRMA_HELHP Length = 404 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 136/375 (36%), Positives = 203/375 (54%), Gaps = 22/375 (5%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWH-----DGDDLY 60 L +++++ L K Q P + L EVF SP +R RAEFR H G D Sbjct: 28 LTLQEFQSFLDTKSKNFQ---YPTNPLAIEVFASPQEGFRARAEFRFSHVFQNKSGLDFA 84 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 F R+ + P + +M ++ + +L HKL+ + L++L N+ ++ Sbjct: 85 MNAFGY--NHRVPIKKCPILLPTLQDIMPLLLHYLNTYDLLNHKLYACNLLSSLQNEIII 142 Query: 121 SLLYHKKLDDEWRQEAEALRDALR-AQNLNVHLIGRATKTKIELDQDYIDERLPVAG--- 176 +L+YHK LD W A ++ L N N+H+IGR+ K L D I E L + Sbjct: 143 TLIYHKSLDSHWESLALKIQKELEYTLNTNIHIIGRSKNHKHILSNDIICEHLTLFANTP 202 Query: 177 KEMIYR--QVENSFTQPNAAMNIQMLEWALDV-----TKGSKGDLLELYCGNGNFSLALA 229 KE Y + E+ F QPN +N QMLE+ + T + D+LELYCG+GNF++ LA Sbjct: 203 KERTYTFFKQESRFCQPNPFINTQMLEFIVSALSSIYTPQTPCDMLELYCGSGNFTIPLA 262 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 F + ATE+ K ++ Q N+A N+I+N+ R+ A E QA+ R F RL+ IDL Sbjct: 263 SIFRHIFATEVVKSAITLLQKNMAKNNIENIIPARLNAFESIQALRKERVFFRLKNIDLD 322 Query: 290 SYQCETIFVDPPRSGL-DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALF 348 ++ + + +DPPRSG+ + E +Q + I+Y+SCNP TL +L LSQ+H V R LF Sbjct: 323 AFAFDCVLIDPPRSGVGEEEVLYFLQNFNTIIYVSCNPHTLLNDLRILSQSHYVMRFGLF 382 Query: 349 DQFPYTHHMECGVLL 363 DQFP+T+H EC V+L Sbjct: 383 DQFPHTYHRECIVIL 397 >UniRef50_C8PJJ3 Trna (Uracil-5-)-methyltransferase (Trna(M-5-u54)-methyltransferase) n=1 Tax=Campylobacter gracilis RM3268 RepID=C8PJJ3_9PROT Length = 519 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 79/180 (43%), Positives = 117/180 (65%) Query: 184 VENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKP 243 +NS + +A N + ++ + DLLELYCG+GNF++ LA F+RVLA+EI+K Sbjct: 336 AQNSSCEQSAPQNSSCEKHSVRPENSAARDLLELYCGHGNFTIPLAAKFNRVLASEISKS 395 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 S+A A+ N N + N Q +R++A+E A REF RL+GID+ Y + +DPPR+ Sbjct: 396 SIANARINCELNGVCNAQFVRLSADELMSAFARRREFERLKGIDIFGYDFSHVLIDPPRA 455 Query: 304 GLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 GL+ ++ + ++YISCNP+TL +NL +L TH+V R A+FDQF +T H+ECGVLL Sbjct: 456 GLEPSVIDFIKNFENLIYISCNPQTLFENLRSLCATHEVRRFAIFDQFAHTAHIECGVLL 515 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 121/255 (47%), Gaps = 37/255 (14%) Query: 43 HYRMRAEFRIWHDGDDLYHIIFD------QQTKSRIRVDSFPAASELINQLMTAMIAGVR 96 +YR+RAEF IWH D++H FD +I ++ P + I LM ++ +R Sbjct: 50 NYRIRAEFGIWH---DIWHSAFDLAYTMGGARSKKILINECPKVALPIANLMPRLLEVLR 106 Query: 97 NNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRA 156 + L+ KLF +++++ S + +LLYHK+L + +E EA+ + A L + ++ RA Sbjct: 107 RSEALKEKLFGVEFISCASG-ILATLLYHKRLGE---REQEAICEL--AGKLGIRVMARA 160 Query: 157 TKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD-VTKGSKGDLL 215 K+ + + + L V + +R EN+F QPN +N +M+ WA V G +G + Sbjct: 161 RGQKLLSGELSLTDELCVDERVYKFRFGENAFIQPNRGVNEKMIAWARSCVDFGKEG--M 218 Query: 216 ELYCGNGNFSLALARNFDRVLATEIAKPSVA---AAQYNIAANHID------NVQIIRMA 266 + C NF+ + IA+ SVA + + + A N D N A Sbjct: 219 GVVCAAQNFA----------VKNSIAENSVAQNSSHEQSDAQNSTDRNSASENSAEFDAA 268 Query: 267 AEEFTQAMNGVREFN 281 F +A + EFN Sbjct: 269 CRNFVKANSACIEFN 283 >UniRef50_A9V6A5 Predicted protein n=1 Tax=Monosiga brevicollis RepID=A9V6A5_MONBE Length = 401 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 158/296 (53%), Gaps = 18/296 (6%) Query: 75 DSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDD-EWR 133 D F A+ I LM A + + ++ L +++ TLS+ ++++L+Y + LD+ WR Sbjct: 105 DEFVIAAPRIKLLMRAFLEHLASDDRLAKSCRSLNFHVTLSDDSMLALVYEEPLDEVGWR 164 Query: 134 QEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENS-FTQPN 192 + AEA R AL + +GRA K I L + ++ ER P+ +Y+Q E S F+ P+ Sbjct: 165 EAAEACRTALGLGTI----VGRAKKQCIALPRTHVLERFPLQPGLDVYQQQEESIFSNPS 220 Query: 193 AAMNIQMLEWALDVTK---GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQ 249 A M +Q ++W ++V + G+ +LLELY G+G ++ A+ F VL+ EI + V AA+ Sbjct: 221 APMCLQTMQWLVEVARQFGGTDLNLLELYSGSGTYTPAMCSVFAHVLSVEIQRTLVEAAR 280 Query: 250 YNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET 309 N+ NH ++ + A EF + + RE + + + + +DPPR GLD T Sbjct: 281 RNLELNHCESRATVHRAPVEFCRRLLRSREH--------EGRRYDAVLLDPPRDGLDDFT 332 Query: 310 EKMVQAYPRILYISCNP-ETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLT 364 + + ++ ISC+P L + E L TH++ R+ + D FP T H+E V+ Sbjct: 333 RSQLHNFEVVMLISCSPLRKLILDAEALHTTHRLARMVILDHFPGTRHLEAAVVFV 388 >UniRef50_C1E1T7 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E1T7_9CHLO Length = 1143 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 125/496 (25%), Positives = 208/496 (41%), Gaps = 141/496 (28%) Query: 3 PE-HLPTE--QYEAQLAEKVVRLQSMMAPFS-----------------DLVPEVFRSPVS 42 PE H P + Y A L KV L+ + +P + PEVF SP Sbjct: 644 PEYHDPVDASTYSAALDAKVAELERLFSPLMQQASIPILNAKGVDRSVSVRPEVFPSPPL 703 Query: 43 HYRMRAEFRI-WHD------------------GDDLYHIIFDQQTKSRIRVDSFPAASEL 83 ++R R F++ W D G L + ++++ K + + FP A Sbjct: 704 NFRSRCRFQVMWEDAPVTAESTGITPGESVEPGRRLSYRMWNK-GKPTVPITEFPMALRE 762 Query: 84 INQLMTAMIAGVRNNPVLRHKLFQIDYLTT--LSNQAVVSLLYHKKLDDEWRQEAEALRD 141 I +LM A++ +P L L I +L + + +V+++Y + +D+ W+ AE R Sbjct: 763 IEELMPAVLREAEAHPELGDGLQAIHFLASRGIRGGMLVTMVYGRPIDEAWKMAAEGPRA 822 Query: 142 ALRAQNLNV-------------------------------HLIGRATKTKIEL-DQDYID 169 L+A +++ +++GR+ T+I + D ++ Sbjct: 823 RLKAAMVDIRERVYGGGDDDGFDGFAGPRGDDEELDATALNILGRSRGTQIVVGDACHVF 882 Query: 170 ERLPVA-GKEMIYRQVENSFTQPNAAMNIQMLEWALDVT----------------KGSKG 212 E L + G+ + YRQ E +F+ PN+ M L+W D + + Sbjct: 883 ETLALRDGRRLRYRQAEGAFSNPNSFMAESTLDWLCDCAATTVREALGGTSEHSAEAAPP 942 Query: 213 DLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ 272 LLELY GNGN ++ALA+ FD V A E++ AA+ N+ N ++N +++ +E + Sbjct: 943 SLLELYSGNGNHTVALAKYFDSVAAVELSGVLCEAARENLERNGVENAKVLHSPSESVAR 1002 Query: 273 AMNGVREFNRLQ--------------------------GIDLKSYQCETIFVDPPRSGLD 306 M +R R + G++ + + VDPPR+GLD Sbjct: 1003 GM--LRRKKRHEEGRVGKAAMAAAATGAGDGSKRGDGSGMEFDINAYDVVLVDPPRAGLD 1060 Query: 307 SETEKMVQAYPRILYISCNP----------------------ETLCKNLETLSQTHKVER 344 +T +V + +LYISC+P E K L++TH + R Sbjct: 1061 PDTLDLVSRFDVVLYISCDPRKGLLENAVGPHAARALDTGEFEGEFKGWSGLARTHDLVR 1120 Query: 345 LALFDQFPYTHHMECG 360 A+FD FPYT H+ECG Sbjct: 1121 FAVFDHFPYTRHIECG 1136 >UniRef50_C1EBD1 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EBD1_9CHLO Length = 512 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 125/450 (27%), Positives = 197/450 (43%), Gaps = 94/450 (20%) Query: 9 EQYEAQLAEKVVRLQSMMAPFSDLVP----EVFRSPVSH-YRMRAEFRIWHD-GDDLYHI 62 + Y LA+K R++ + +P EV+ SP + YR R F I D G L + Sbjct: 64 DAYLELLADKTKRVRELFH-GGGFIPARGVEVYASPKTRGYRSRCRFAIARDDGGRLRYA 122 Query: 63 IFDQQ---------TKSRIRVDSFPAASELINQLMTAMIA------GVRNNPVLRHKLFQ 107 +F+ D FP ASE I ++M ++ G N L L Sbjct: 123 LFENGEVVMLGDDDADEDGDTDVFPWASEPIARVMPVLLELLNDADGSPNARALTTGLSA 182 Query: 108 IDYLTTLSNQAVVSLLYHKKLDD-----------------EWRQEAEALRDALRAQNLNV 150 + +L + + VV+L +++ D+ EW +A L +LR+ + Sbjct: 183 VGFLASRGGEVVVTL-WNRMTDNAGDTNTAGDANTAIGDAEWNDDANGLLSSLRSVGVTG 241 Query: 151 HLIGRATKTKIELDQ-DYIDERLPVAG-----------------------------KEMI 180 + R KT + + +++ E + V G + + Sbjct: 242 VVTRRRRKTLVASNGVNHVWEPMTVPGDIPGDIEIIAAVPGDIPGDVGTGTTRSQSRHLR 301 Query: 181 YRQVENSFTQPNAAMNIQMLEWALD------VTKGSKG------------DLLELYCGNG 222 Y+QVE +F+ PN + W D + + KG LLELYCGNG Sbjct: 302 YKQVEGAFSNPNGDVAEVTARWLHDACEDILLARNKKGLGLGSTPLSTLPWLLELYCGNG 361 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 N +++L+ F RV A EI VAAA N A N + N + + AE F +A G Sbjct: 362 NHAVSLSPRFGRVTAVEIEPRLVAAANENFAVNGVANATVTALPAEVFARARTGTGSRGL 421 Query: 283 LQGIDL-----KSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLE-TL 336 L G D+ +++ T+ VDPPR+GLD +T +V + +LY++C+ +L ++L+ TL Sbjct: 422 LDGDDVDQLLADAWRDGTVLVDPPRAGLDEDTLALVAGFGSVLYVACDCASLARDLKSTL 481 Query: 337 SQTHKVERLALFDQFPYTHHMECGVLLTAK 366 +TH+V R+ALFD FP + E V L AK Sbjct: 482 GKTHEVRRMALFDHFPGSRFCEVVVWLEAK 511 >UniRef50_A4RQU4 Predicted protein n=2 Tax=Ostreococcus RepID=A4RQU4_OSTLU Length = 308 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 91/298 (30%), Positives = 151/298 (50%), Gaps = 11/298 (3%) Query: 72 IRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV-SLLYHKKLD- 129 + VD FP A I +M ++ LR L +L ++ V+ +L+Y ++ Sbjct: 9 VMVDDFPMARRAIRDVMGRLLREASAVAALRDGLEATHFLCGVAEGKVLATLVYSTPINV 68 Query: 130 DEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVA-GKEMIYRQVENSF 188 D W A L A + ++++ L+GR + D++ E + G + Y+ E +F Sbjct: 69 DAWTLAARRLL-ATKFDDVSLELMGRCKGVVAKTGDDFVWEEYELGDGSVLTYKHTEGAF 127 Query: 189 TQPNAAMNIQMLEWALDVTK---GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 + PN + I +E+ D K + LLELYCGN N + ALA ++RV+A E+ V Sbjct: 128 SNPNRTITIATMEFLRDAAKKKFSRRKMLLELYCGNANHTCALANLYERVVAVEVNPVLV 187 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQA-MNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 AA+ ++ N + NV II +E ++ + G +F G ++ + + VDPPR+G Sbjct: 188 DAARESLDMNSVSNVDIILSPSESVAKSLLRG--KFKDAAGATIRVEDFDAVLVDPPRAG 245 Query: 305 LDSETEKMVQAYPRILYISCNPETLCKNL-ETLSQTHKVERLALFDQFPYTHHMECGV 361 LD++T +V +LY+SC PE L N+ + L TH V+ + D FP+T H+E V Sbjct: 246 LDADTLALVSQIDHVLYVSCGPENLLANIRDGLDATHAVDDFIVLDHFPWTRHIEVAV 303 >UniRef50_C1MPR1 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MPR1_9CHLO Length = 484 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 118/425 (27%), Positives = 185/425 (43%), Gaps = 97/425 (22%) Query: 32 LVPEVFRSPVSHYRMRAEFRIWH-DGDD--LYHIIFDQQTKSRIRVDSFPAASELINQLM 88 ++PEVF SP SH+R R F++ +G D L + ++D S I V +FP A +N++M Sbjct: 53 VMPEVFASPRSHFRSRCRFQVARAEGADGALSYRMWDGGKPSVI-VSTFPMALRRVNEVM 111 Query: 89 TAMIAGVR---------------NNPVLRHKLFQIDYLTTLSNQA--VVSLLYHKKLDD- 130 ++ ++ + VL L +L S + +V+L+Y +D Sbjct: 112 RLLLGALQEGLDAAAAGGGGGAGRDDVLTTGLEAAHFLAARSARGGVLVTLVYSSPIDAA 171 Query: 131 EWRQEAEALRDAL----------------------------RAQNLNVHLIGR------- 155 W A ALR L + L V+++GR Sbjct: 172 RWVPAATALRTRLASALERSSPAAADEEDESPPPLHLLSEDESARLRVNVLGRSKGVALS 231 Query: 156 ------------ATKTKIELDQDYIDERLPVA-GKEMIYRQVENSFTQPNAAMNIQMLEW 202 A+ + + Y+ E L + G Y+ E +F+ PNA M L W Sbjct: 232 ARVVPVPGAAGDASPSPSRPGETYVVETLRLDDGDAFAYKNAEGAFSNPNAWMAEHTLTW 291 Query: 203 ------ALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAAN 255 A+ +G G LLELYCG GN ++ALA F RV+A EI++ AA+ N+ N Sbjct: 292 LRSCARAIAAERGGAGASLLELYCGCGNHTVALAGMFTRVVAVEISEELCDAARDNLRRN 351 Query: 256 HI-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ 314 I + V I+ + ++ + G+D + + VDPPR+GLD++T +V+ Sbjct: 352 GIEEGVSIVHAPSASVSRELLRGGGGGLGLGLD----AFDVVLVDPPRAGLDADTLALVK 407 Query: 315 AYPRILYISCNPETLCKNLET---------------LSQTHKVERLALFDQFPYTHHMEC 359 + +LYISC+P +L ++ LS TH V + A+FD FPYT H E Sbjct: 408 RFEYVLYISCDPASLARDAMGGEEGNGNGKGGGTLRLSDTHDVVKFAVFDHFPYTRHAEV 467 Query: 360 GVLLT 364 G Sbjct: 468 GACFA 472 >UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Pseudomonadaceae RepID=B3PL62_CELJU Length = 485 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 102/346 (29%), Positives = 159/346 (45%), Gaps = 38/346 (10%) Query: 37 FRSPVSHYRMRAEFRIWHDGDDLYHIIF-DQQTKSRIRVDS----FPAASELINQLMTAM 91 RS YR RA +W++ D + F QQ K+ ++S PA + LI L + Sbjct: 161 LRSESLGYRSRARLGVWYEADSSVTLGFRQQQRKTLTNIESCSVLLPALNRLIGPLRQWL 220 Query: 92 IAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVH 151 A V N V I+ + S AV+ + + K L RQ AL + + ++ V Sbjct: 221 QARVANKAVT-----HIELVAAQSGPAVI-VRHTKPLVALQRQ---ALAELAQRESCQVW 271 Query: 152 LIGRATKTKIELDQDYIDERL--PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKG 209 L + +L+ +D L VAG + + FTQ N A+N +M++ AL++ Sbjct: 272 LEPNGNQGLTDLEGSPVDPHLVLDVAGLPLHFH--PQDFTQVNPAVNGRMVQQALELLAP 329 Query: 210 SKGDL-LELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE 268 DL L+ +CG GNF+L +A RV+ E+ +P V AQ N +DN+ Sbjct: 330 GTNDLVLDFFCGMGNFTLPMASRVARVIGLEVVEPMVTRAQANATRLGLDNL-------- 381 Query: 269 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG-------LDSETEKMVQAYPRILY 321 EF +A + RL+ + Q I +DPPR G L K + RI+Y Sbjct: 382 EFLKADLSQMDSPRLRQL---CSQASAILLDPPRDGAKELVTQLRDLRRKGQLSAQRIVY 438 Query: 322 ISCNPETLCKNLETLSQT-HKVERLALFDQFPYTHHMECGVLLTAK 366 +SCNP TL ++ L++ + ++ L + D FP+T H+E L K Sbjct: 439 VSCNPATLARDAALLAEAGYGLDALGVMDMFPHTSHVESMALFLYK 484 >UniRef50_A9BFH8 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BFH8_PETMO Length = 387 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 121/250 (48%), Gaps = 29/250 (11%) Query: 128 LDDEWRQEAEALRDALRAQNLN---VHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQV 184 LD+ + QE E ++ + NL V +I T++K + + DE + G++ Y ++ Sbjct: 150 LDNTYYQEVETWKEEMLNTNLKGNIVSIIQSKTESKANVVK--ADEMEILYGRDYFYEKI 207 Query: 185 EN--------SFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVL 236 + SF Q N + + AL + S + + Y G G SL LA +V Sbjct: 208 LDLTFKIGPFSFFQTNTKGTEVLYQTALSYAENSDV-VYDFYSGTGTISLLLANKAKKVY 266 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 EI K +V AA+ N N+I+NV+ + ++F + + + + I Sbjct: 267 GIEIIKEAVEAAKQNAILNNINNVEFVNKDVKDFVKQQSSTE-------------KPDYI 313 Query: 297 FVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYT 354 VDPPR+GL K + Q + +I+YISCNP+TL NL+ LS + + L D FP+T Sbjct: 314 VVDPPRAGLHPNLIKFIKTQQFNKIIYISCNPKTLIPNLKELSDLYTISDFHLVDMFPHT 373 Query: 355 HHMECGVLLT 364 H+E VL+T Sbjct: 374 DHVESVVLMT 383 >UniRef50_C1MV95 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MV95_9CHLO Length = 459 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 105/207 (50%), Gaps = 26/207 (12%) Query: 179 MIYRQVENSFTQPNAAMNIQMLE-------------------WALDVTK-GSKGDLLELY 218 + Y+QVE +F+ PN + + ++ DVT+ + L ELY Sbjct: 251 LTYKQVEGAFSCPNGDVAEETARSVVTEIAYERIGAGKTKNGFSEDVTEFPTLSSLTELY 310 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 CGNGN + +LA FD V A EI AAA N AN + N + + AE F G Sbjct: 311 CGNGNHTCSLAPYFDEVSAVEIDPRLCAAAAENFKANGVANATVRALPAEAFAAETEG-E 369 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLE--TL 336 + +L G L + + VDPPR+GLD +T + + + I+YI+C+ L ++LE L Sbjct: 370 DAKKLNGA-LNTEG--VVLVDPPRAGLDEKTLALARKFRSIIYIACDFNALHRDLEERGL 426 Query: 337 SQTHKVERLALFDQFPYTHHMECGVLL 363 +TH V+ LALFD FP++ +E V L Sbjct: 427 RRTHVVKELALFDHFPFSAFVEVAVRL 453 >UniRef50_Q1IVF7 (Uracil-5)-methyltransferase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IVF7_ACIBL Length = 441 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 93/337 (27%), Positives = 159/337 (47%), Gaps = 49/337 (14%) Query: 44 YRMRAEFRIWHDGDDLYHIIFDQ-QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLR 102 YR R R+ H + I + + + S + V+ P +S LIN+++ + A R + R Sbjct: 125 YRNRTRMRVSHVPQ--FAIGYYRFGSHSLLPVEQCPISSPLINRVLQGLWAAGREERIAR 182 Query: 103 HKLFQIDYLTTLSNQAVVSLLY--HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK 160 ++ ++ + + ++ LY H D + E LR + + G A Sbjct: 183 -EVREVQFFANHDDSRLLLELYIDHHAEPDALQPMIETLRGKM------PEIAGVAVFRG 235 Query: 161 IELDQDYIDERLPVA----------GKEMIYRQVENSFTQPNAAMNIQMLEWALD----- 205 D D D+R P+ G+ + + + Q +A Q + LD Sbjct: 236 APAD-DSEDQRAPLTRAKASPGVFFGERSLRYKTKRHEYQVSAGAFFQTNRFLLDEMAET 294 Query: 206 VTKGSKGDL-LELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIR 264 VT+G G L L+LY G G FSL LA F++V+A E + S Q ++ N + NV+ +R Sbjct: 295 VTRGHSGKLALDLYSGGGFFSLPLADQFEKVIAVEASGHS----QADLKTNALRNVKAVR 350 Query: 265 MAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYI 322 +G EF R +G L+ + + VDPPR+GL +T ++ + R+ Y+ Sbjct: 351 ----------SGTEEFLRGEGRQLRP---DLVVVDPPRAGLGEKTSHLIGRMSVGRVTYV 397 Query: 323 SCNPETLCKNLETLSQT-HKVERLALFDQFPYTHHME 358 SC+P TL ++++ L ++ +VE + LFD FP T+H+E Sbjct: 398 SCDPATLSRDMKVLVESGFRVEEVHLFDLFPQTYHLE 434 >UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYI0_DESAD Length = 465 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/204 (31%), Positives = 109/204 (53%), Gaps = 17/204 (8%) Query: 165 QDYIDERLPVA-GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNG 222 Q++I E L A G E+ YR N+F Q N+ + + ++ D++ +L+CG+G Sbjct: 272 QEHITETLTHADGSEVSYRITPNAFFQTNSKGAEVLYRKSSELAAPKADDVVWDLFCGSG 331 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 + +A++ +++ E+++ SV +A+ N A N ++N Q I V Sbjct: 332 GIGMFMAKDVGKMIGIEVSEESVQSAKDNAALNGLENTQYI-------------VGNLAS 378 Query: 283 LQGIDLKSYQCETIFVDPPRSGL-DSETEKMVQAYP-RILYISCNPETLCKNLETLSQTH 340 +G+ + + VDPPRSG+ D +K+++ P +ILYISCNP TL ++ + + Sbjct: 379 EKGLPEDLPHPDMVIVDPPRSGVPDPSLQKLIELGPEKILYISCNPSTLARDAAKMEGRY 438 Query: 341 KVERLALFDQFPYTHHMECGVLLT 364 K+ER A D FP+T H+E LLT Sbjct: 439 KLERFAAVDMFPHTAHVESIALLT 462 >UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marinomonas RepID=A6VUQ2_MARMS Length = 440 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 101/182 (55%), Gaps = 16/182 (8%) Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVA 246 F Q NAAMN +M+ A+D SK D +L+L+CG GNFSL LA + V+ E+ + V Sbjct: 271 FIQVNAAMNQKMVVQAMDWLNPSKQDVILDLFCGVGNFSLPLAVHAQAVIGVEVQETMVE 330 Query: 247 AAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD 306 AA+ N N DN+ + A + T+ +N +L + +DPPR+G Sbjct: 331 AARENARVNGFDNLSFV---AADLTKPVNN----------ELFKQTITKVLLDPPRAGAF 377 Query: 307 SETEKMVQAYP-RILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLT 364 + +++ P +ILY+SCN TL ++ E L ++ ++V R++L D FP T H+E +LL Sbjct: 378 EFLDSIIKIGPTQILYVSCNASTLARDAEYLVAKGYRVLRVSLMDMFPQTSHVETMMLLQ 437 Query: 365 AK 366 K Sbjct: 438 KK 439 >UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1APX5_PELPD Length = 446 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 105/351 (29%), Positives = 156/351 (44%), Gaps = 40/351 (11%) Query: 30 SDLVPEVFRSPVSH-YRMRAEFRIWHDGDDLYHIIFDQQTKSRIR--VDSFPAASELINQ 86 +LV +V SP+++ YR R +F++ G +L I F +Q + P A +IN+ Sbjct: 111 GELVADVVASPLTYGYRSRVQFKLHGAGPNL-RIGFYRQGTHFVEDAGQGCPIALPVINR 169 Query: 87 LMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLY----HKKLDDEWRQEAEALRDA 142 ++ ++ + P K+ QI+ L AVV + Y H+ +R+ A L Sbjct: 170 ILGSLREMLPAFPD-PTKIPQIN-LECAEKGAVVIVNYIGDDHQGAKAFFRERAAQLE-- 225 Query: 143 LRAQNLNVHL-IGRATKTKIELDQDYI-----DERLPVAGKEMIYRQVENSFTQPNAAMN 196 Q ++L GR + + D + E + YR F Q NAA N Sbjct: 226 ---QATALYLQTGRKSTLQKVFGDDLLQYSQEGESSTAPACSLTYR--PGGFAQVNAAQN 280 Query: 197 IQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAAN 255 +L + + D +L+LYCGNGNFSL LAR V E S+AAA++N N Sbjct: 281 SALLRLVREFADCRRDDQILDLYCGNGNFSLPLARGVAAVTGIEEYGDSIAAARHNARLN 340 Query: 256 HIDNVQIIRM-AAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ 314 I NV+ I AA + M R F TI +DPPRSG E + + Sbjct: 341 GITNVEFICADAAAGAGKLMGDGRRF-------------PTIILDPPRSGAADLLEHIPR 387 Query: 315 -AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLL 363 +I+YISC+P TL ++ L + + V D FP T H+E LL Sbjct: 388 LGADKIIYISCDPSTLARDCGVLFGKGYTVVSSVPVDMFPQTFHLESVTLL 438 >UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU49_9GAMM Length = 439 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/347 (25%), Positives = 158/347 (45%), Gaps = 36/347 (10%) Query: 31 DLVPEV----FRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIR-VDSFPAASELIN 85 DL PE+ +P YR RA + D + F RI + +E + Sbjct: 113 DLSPEIILPALSAPQWGYRRRARLAVQRAKDGQIIVGFRNAGSRRIEPITECHVLAEPLP 172 Query: 86 QLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRA 145 +++ A+ + N P +L +I+ L+ N +++ + R + + R+A+ A Sbjct: 173 EIVAALPGWMVNFPS-GIRLSEIELLSA-DNAVAIAI-------EASRVPSASEREAMLA 223 Query: 146 Q--NLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE-NSFTQPNAAMNIQMLEW 202 + + L + K D D+ L V + I QVE F Q N+ +N QM++ Sbjct: 224 ELTFTDAQLWWKTEKQTAFKRIDGGDQALHVVLNDRIELQVEPGQFVQVNSEINRQMIDQ 283 Query: 203 ALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHID 258 LD+ + + ++L+CG+GNFSL LA FDRV+ E V AQ N N++ Sbjct: 284 VLDLVRTPNSERASVAVDLFCGSGNFSLPLAAQFDRVIGIEGLSELVGKAQENAQRNNVS 343 Query: 259 NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPR 318 N + + V + + G+ + + + +DPPRSG +V+ + Sbjct: 344 NAEFV-------------VSDLSNWTGMRKIKGKVDLVLLDPPRSGAAGVMPWVVKTKAK 390 Query: 319 -ILYISCNPETLCKNLETLSQT-HKVERLALFDQFPYTHHMECGVLL 363 ++YISC+P T+ ++L+ L + +K+ + D FP+T H+E LL Sbjct: 391 QVVYISCHPSTMVRDLKVLVEAGYKMIAAGVMDMFPHTAHVEAIALL 437 >UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8C0_9BACT Length = 541 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 93/184 (50%), Gaps = 21/184 (11%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF Q N Q+ +A + +G +LLELYCG G + L+R + A E+ +V Sbjct: 278 TSFFQANPGQAEQLFAYAASLAEGQ--NLLELYCGVGALTAFLSRKAKTIRAVEVWASAV 335 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A A+ N +N I+ + +++ AAE + L+GID + VDPPR+G Sbjct: 336 ALARENGESNRIEGLTVLQGAAENVVAPAD-------LEGID-------CVVVDPPRAGC 381 Query: 306 DSETEKMVQA--YPRILYISCNPETLCKNLETLSQTHKV---ERLALFDQFPYTHHMECG 360 D + + A PR+LYISCNP TL ++ L V + L +FD FP T H+E Sbjct: 382 DKSLIETIAASRVPRVLYISCNPATLARDAALLRDAGYVLDMDSLKVFDMFPQTCHVETV 441 Query: 361 VLLT 364 LL+ Sbjct: 442 CLLS 445 >UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Persephonella marina EX-H1 RepID=C0QRS2_PERMH Length = 421 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 89/338 (26%), Positives = 153/338 (45%), Gaps = 55/338 (16%) Query: 43 HYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLR 102 +YR R + +I + Y ++++ I +DS E IN MI+GVR +L+ Sbjct: 118 NYRNRTQLKIRGEKIGFYM----RESRQIINIDSCLLLKEDIN----GMISGVRE--ILK 167 Query: 103 HKLFQ---IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKT 159 +FQ + ++ +A+V +Y K++ R L ++L L + Sbjct: 168 FLIFQPEQVHIYSSSDGEALVKFVYQKRVR----------RFPLGLKHLRSFLSEKLKGA 217 Query: 160 KIELDQDYIDERLPVAGKEMIY--------RQVENSFTQPNAAMNIQMLEWALDVTKGSK 211 I +D + +R + G+ IY R +SF Q +N+ +E LD + Sbjct: 218 GIYHRKDDLLKRDVLLGESYIYEEYGGIKFRVSMDSFFQ----VNVYQVENLLDAVLQNI 273 Query: 212 GD---LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE 268 GD ++L+CG G +L AR + E +V A +N N I N + RM A Sbjct: 274 GDHEKAVDLFCGVGTLTLPSARYIKEIYGIESNPYAVNDANHNRKLNRIKNAKFFRMDA- 332 Query: 269 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKM---VQAYPRILYISCN 325 NR G + + + + +DPPR+G+ + + + RI+Y+SCN Sbjct: 333 ------------NRSGGF-IAELKPDLVIIDPPRTGVSDDLVRTFLDTDSIKRIIYVSCN 379 Query: 326 PETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 P TL ++L L + + VE++ + D FP T+H+E V+L Sbjct: 380 PSTLARDLGYLKERYSVEKVYMIDMFPQTYHIESVVVL 417 >UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Enterobacteriaceae RepID=RUMA_ENTS8 Length = 432 Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 94/177 (53%), Gaps = 21/177 (11%) Query: 188 FTQPNAAMNIQM----LEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKP 243 F Q N A+N QM LEW L++ G + +L+L+CG GNF+L LAR + V+ E Sbjct: 263 FIQVNDAVNQQMVARALEW-LEIQPGER--VLDLFCGMGNFTLPLARRAESVVGVEGVAA 319 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 V YN N + NV + EE + R+ QG D + +DP R+ Sbjct: 320 LVEKGDYNAGLNALKNVTFFQHNLEE-----DVTRQPWAQQGFD-------KVLLDPARA 367 Query: 304 GLDSETEKMVQAYP-RILYISCNPETLCKNLET-LSQTHKVERLALFDQFPYTHHME 358 G + +V+ P R++Y+SCNP TL ++ ET L+ ++ RLA+ D FP+T H+E Sbjct: 368 GAAGVMQHIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVRLAMLDMFPHTGHLE 424 >UniRef50_B7FQ55 Predicted protein n=2 Tax=Bacillariophyta RepID=B7FQ55_PHATR Length = 403 Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 104/368 (28%), Positives = 157/368 (42%), Gaps = 66/368 (17%) Query: 44 YRMRAEFRIWH-----DGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN 98 YR R F+I H DG Y + +Q + + +FP A+ I + M ++A + N+ Sbjct: 55 YRCRCSFQIVHGDMKSDGHLRYAV---RQNHEPVCITAFPVANLRIQRSMWNVLA-LFND 110 Query: 99 P-----VLRHKLFQIDYLTTLS-NQAVVSLLYHKKLDDE--WRQEAEALRDALRAQNLNV 150 P L+ L + T+ VV+L Y + DE W EA+ + L L Sbjct: 111 PEEQFGQLKQSLTSATFSTSWDETMCVVTLHYMNPVSDESAWETEAQNMCQRLELAQLTG 170 Query: 151 HLIGRATKTKIELDQDYID----ERL----------PVAGKEMI---YRQVENSFTQPNA 193 R +T+ E D ER+ + + I Y + E++F PN+ Sbjct: 171 RSRKRILRTRNEGTTIICDTIWMERVGSNWNVSLEKTLTSSDRIAVHYNKPEDAFYHPNS 230 Query: 194 AMNIQMLEWALDVTKGSKGDL-------LELYCGNGNFSLALARN--FDRVLATEIAKPS 244 LEW L DL LE+YCG G ++ LA+ ++LA E+ + Sbjct: 231 RAMCNALEWMLSRIVLIVADLETLTPRLLEMYCGCGAHTIPLAKTGLLSKILAIELDERL 290 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCET----IFVDP 300 V A Q NI N ID+ ++I M +++ + S +CE+ I VDP Sbjct: 291 VRACQQNILLNGIDS-ELIDMVSQDAGKW----------------SQRCESSFDIILVDP 333 Query: 301 PRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHME 358 PR GLD +M + +LYISC + L ++LE L + VE L D FP T +E Sbjct: 334 PRQGLDESVCQMATRGDFQHMLYISCGRDALVRDLERLGGSFAVENCTLLDLFPTTGAVE 393 Query: 359 CGVLLTAK 366 V L K Sbjct: 394 SLVHLKRK 401 >UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNG0_9FIRM Length = 436 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 15/153 (9%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 L+E YCG G SL + ++V E+ ++ A+ N NH+DN E A Sbjct: 293 LVEAYCGIGVMSLLASSKAEQVYGIELNPHAIQDAKRNAELNHLDNCHF------ECADA 346 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYP-RILYISCNPETLCK 331 +G+ + + Q ID T+ +DPPRSGLD E ++++ P RI+YISCNP TL K Sbjct: 347 ADGLYKIAKKQKID-------TLLIDPPRSGLDEAMLEAILKSQPDRIIYISCNPATLAK 399 Query: 332 NLETLSQTHKVERLALFDQFPYTHHMECGVLLT 364 N+ L +++ + FD FP T H+EC LL+ Sbjct: 400 NIAVLKWKYQILTIQAFDLFPQTPHVECLCLLS 432 >UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7X4_AMMDK Length = 436 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 20/211 (9%) Query: 153 IGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG 212 +G K ++ + +I + L + +R SF Q N ++ L+ S Sbjct: 236 VGARGKEEVLYGEGHITDSL----DGLSFRLSALSFYQVNPVQTSRLYRKVLEYASLSGR 291 Query: 213 D-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT 271 + +++ YCG G +L LAR +V+ EI+ +VA A N A N + +V ++ AAEE Sbjct: 292 ERVIDAYCGVGTITLFLARKAAQVIGIEISPEAVALASVNAAQNGLSHVSFVKGAAEEVL 351 Query: 272 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD-SETEKMVQA-YPRILYISCNPETL 329 + R DL + +DPPR G+ + E +V+A PR++Y+SCNP TL Sbjct: 352 PEL-----LAREGMFDL-------VVLDPPRQGVKQAALESLVRAQVPRVIYVSCNPATL 399 Query: 330 CKNLETLS-QTHKVERLALFDQFPYTHHMEC 359 ++L LS Q ++V+ + D FP+T+H+EC Sbjct: 400 ARDLGFLSAQGYRVQEVQPVDMFPHTYHVEC 430 >UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0G9_UNCTG Length = 449 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 106/214 (49%), Gaps = 22/214 (10%) Query: 156 ATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-L 214 A + + + +I ERL + GK+ + SF Q N+ + L + SK L Sbjct: 250 ADRLTLMCGKPFITERLNIGGKDYFFDISPFSFFQTNSKATEILYTEILRLLNPSKYTVL 309 Query: 215 LELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAM 274 L+LYCG G +++A N RV+ E ++ A+ N AN++ N + AE++ + Sbjct: 310 LDLYCGTGAIGISMAHNVKRVIGVECIGQAIDNAKENALANNVFNAEFYASDAEDWIK-- 367 Query: 275 NGVREFNRLQGIDLKSYQC-ETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCK 331 ++ C + + VDPPRSGL + K + RI+Y+SCNP TL + Sbjct: 368 --------------ENKSCFDAVVVDPPRSGLTKDIIKFLLESKAKRIIYVSCNPSTLAR 413 Query: 332 NLETLSQTH--KVERLALFDQFPYTHHMECGVLL 363 +L+ +++ K++ + D FP T+H+E VLL Sbjct: 414 DLQLITENSKCKIKEIIPVDMFPQTYHIETVVLL 447 >UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillaceae RepID=A4IK46_GEOTN Length = 463 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 97/388 (25%), Positives = 178/388 (45%), Gaps = 57/388 (14%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS-----HYRMRAEFRIWHDGDDLYHIIF 64 QYE QL K +++++ P + R + HYR + EF +G L + Sbjct: 96 QYEGQLRHKTEHVKALLEQHG-FDPNIVRETIGMEHPWHYRNKMEFTFSPEG--LLGLHE 152 Query: 65 DQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQIDYLTT 113 + I +++ A E I + + R++ +LRH + + + T Sbjct: 153 QGNFRQIISLETCLIAGERIVKAAMEVARWARDHQLPGYHKDTHEGLLRHVMVRESFAT- 211 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALRD----ALRAQNLNVHLIGRATKTKIELDQDYID 169 + +V+L + + E +Q A+ L + AL + L RA +I+ +Q ++ Sbjct: 212 --GEVMVALFATEAPEGELKQAADDLTERITKALPEVKSLLWLENRAWADRIQAEQTHV- 268 Query: 170 ERLPVAGKEMIY--------RQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCG 220 +AG++ IY R ++F Q N +++E AL++ K + +++L+CG Sbjct: 269 ----LAGRDFIYDELCGFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQPHEKMIDLFCG 324 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE- 279 G FSL A+ + EI + S+ +A+ N N IDN + A + + ++ V E Sbjct: 325 VGTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFL---ARDARRGIDEVLEQ 381 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYP-RILYISCNPETLCKNL-ETL 336 F R E + +DPPRSG + K+ ++ P RI+Y+SCNPET ++ E + Sbjct: 382 FGR----------PELLLLDPPRSGAGGKVMRKIGRSQPERIVYVSCNPETFAADIAELV 431 Query: 337 SQTHKVERLALFDQFPYTHHMECGVLLT 364 + ++ + D FP+T H+E L++ Sbjct: 432 PFGYTLKTVQPVDMFPHTAHVELVALMS 459 >UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clostridium RepID=A3DG93_CLOTH Length = 453 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 92/352 (26%), Positives = 152/352 (43%), Gaps = 58/352 (16%) Query: 40 PVSHYR--MRAEF--RIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV 95 P+ Y+ +RA F + H+ D R+R E I + + + Sbjct: 135 PIGRYKDGIRAGFYAKRSHEIIDCATCTIQHSVSDRVRA----VVKEYIEKNNISTYDEI 190 Query: 96 RNNPVLRHKLFQIDYLTTLSNQAVVSLLYH-------KKLDDEWRQEAEALRDALRAQNL 148 ++RH + ++ + T + +V L+ + KKL D +E ++ + L Sbjct: 191 TGEGLVRHIMTRVGFKT---GEVMVVLVINGRNIPSQKKLVDRLVKEIPEIKSVV----L 243 Query: 149 NVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVEN--------SFTQPNAAMNIQML 200 NV+ +T + L DE + V G++ I + SF Q N + Sbjct: 244 NVN----TKRTNVILG----DENIVVYGRDTITDYIGEFKFNISPLSFFQVNPVQTEVLY 295 Query: 201 EWALDVTK-GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDN 259 ALD + K + +LYCG G SL L++ R+ E+ + +V A N N ++N Sbjct: 296 RKALDYAQLTGKETVFDLYCGIGTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVEN 355 Query: 260 VQIIRMAAEEFTQAM--NGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEK-MVQAY 316 + I AE+ M GVR + + VDPPR G D K +V Sbjct: 356 AEFIVGEAEKVIPEMYEKGVR--------------ADVVVVDPPRKGCDEAVLKTLVDMK 401 Query: 317 P-RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTAK 366 P RI+Y+SCNP TL ++L+ L++ +V + D FP+T+H+EC L+ K Sbjct: 402 PERIVYVSCNPATLARDLKYLAEGGFEVREVQPVDMFPWTYHVECVALIEKK 453 >UniRef50_Q01U84 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01U84_SOLUE Length = 389 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 27/208 (12%) Query: 166 DYIDERLP--VAGK---EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYC 219 D+ E++P V G E +R NSF Q N + +++E A++ G++GD L+LY Sbjct: 199 DWCGEKIPGMVEGALDYEGRFRVSSNSFFQVNRFLIDRLVEVAIE---GAEGDTALDLYA 255 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G SL LAR F V A E +V Q+N N + NV+ + AEE+ A+ + Sbjct: 256 GVGLLSLPLARKFREVTAVESGAGAVRDLQFNAERNGLANVRALPKTAEEYLLALEAAPD 315 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLD-SETEKMVQAYPR-ILYISCNPETLCKNLETL- 336 + +DPPR+GL + +++ + PR + ++C+P TL ++L L Sbjct: 316 L---------------VVLDPPRTGLGKTVVKRLSELRPRQVTIVACDPATLARDLAGLV 360 Query: 337 SQTHKVERLALFDQFPYTHHMECGVLLT 364 + ++VE++ L D FP T+H+E V LT Sbjct: 361 AAGYRVEKMTLVDLFPQTYHLETVVRLT 388 >UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCG8_9FIRM Length = 542 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 92/186 (49%), Gaps = 23/186 (12%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVA 246 SF Q N A + + + KG K ++E Y G G SL L D ++ E K +V Sbjct: 269 SFFQLNTAQAKVLYQTIASLVKGHKKRIVEAYSGIGAISLYLRDKADEIIGIETIKDAVV 328 Query: 247 AAQYNIAANHIDNVQII-RMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A N NH ++V+ + AA + T K+ + + + VDPPRSGL Sbjct: 329 NANQNAKRNHCEHVRFLCDDAASKLTYLS--------------KNKEIDVLVVDPPRSGL 374 Query: 306 DSETEKMVQAYPR-----ILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECG 360 D + M++ R I+Y+SCNP TL KNL L + ++V+R+ D FP T H+E Sbjct: 375 D---DAMLECLLRSKIKEIIYVSCNPATLGKNLAVLQEKYRVQRVIPIDMFPNTQHVETV 431 Query: 361 VLLTAK 366 VLL+ K Sbjct: 432 VLLSHK 437 >UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDX4_CLOTS Length = 452 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 93/183 (50%), Gaps = 18/183 (9%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGD--LLELYCGNGNFSLALARNFDRVLATEIAKPS 244 SF Q N + E AL+ KGD ++++YCG G S+ A+ V E+ + Sbjct: 281 SFFQVNPIQTKVLYEKALEYAD-LKGDEIVIDVYCGIGTISIFFAKYVKHVYGIEVVSDA 339 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 V A+ N A N I+N I AE + RL L + I +DPPR G Sbjct: 340 VEDAKRNAAINGINNADFIAGKAEHVMK---------RLYKEGLMP---DIIILDPPRRG 387 Query: 305 LDSET-EKMVQAYP-RILYISCNPETLCKNLETLSQT-HKVERLALFDQFPYTHHMECGV 361 LD + ++ V+ P +I+YISCNP TL ++L +K E++ D FPYT+H+EC V Sbjct: 388 LDKDVVDECVKMNPQKIIYISCNPTTLARDLRIFEDNGYKTEKVQPVDMFPYTYHVECVV 447 Query: 362 LLT 364 L++ Sbjct: 448 LMS 450 >UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UYU1_9AQUI Length = 408 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/322 (24%), Positives = 148/322 (45%), Gaps = 44/322 (13%) Query: 43 HYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLR 102 +YR R +F+ DG + + ++ + ++S A + IN L+ + +NNP Sbjct: 117 NYRNRVQFKF--DGKNFG--FYKLKSNEVVDIESCDIADKNINNLIPTLKNLAKNNP--- 169 Query: 103 HKLFQIDYLTTL---SNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKT 159 Q++ L N+ ++ ++ L + E L D + V++ + K Sbjct: 170 ----QVEELHIFHHPDNKPMLKIV----LKENLFMNIENLLDTFAG--IGVYIGNKRVKL 219 Query: 160 KIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYC 219 + + + R AGK YR +SF Q N +++ + + ++YC Sbjct: 220 E---GKSFTFYR---AGK-FNYRVSIDSFFQVNKYQLENIVDEVISEIPKDSQCIGDIYC 272 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G F+L ++ +V E +K +V AQYN+ ++I N + + E+ + G Sbjct: 273 GVGLFTLPASKKAKKVFGIEASKSAVKDAQYNVKVHNIGNAKFYQKVVEKSADIIFG--- 329 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQ--AYPRILYISCNPETLCKNLETL 336 Y +T+ DPPR+G+ +K++Q + RI+Y+SCNP T +++ L Sbjct: 330 -----------YNPDTLIFDPPRTGIPKNIIQKLLQLKSLKRIIYVSCNPSTASRDINLL 378 Query: 337 SQTHKVERLALFDQFPYTHHME 358 S+ +++++ L D FP THH+E Sbjct: 379 SEKFELKKVKLIDMFPQTHHIE 400 >UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=6 Tax=Geobacter RepID=Y1748_GEOSL Length = 438 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 92/337 (27%), Positives = 154/337 (45%), Gaps = 40/337 (11%) Query: 44 YRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR------N 97 YR RA+F+I G L H+ F ++ + +D+ PA + + + + +R + Sbjct: 122 YRCRAQFKIRWSGGRL-HMGFYRRGSHYV-IDA-PAECVICDPAINLTLRDLRLVLPDFS 178 Query: 98 NPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALR--AQNLNVHL-IG 154 P K+ QID T ++ + Y + D + A+ R A +HL G Sbjct: 179 EP---DKIPQIDAATGEDGHVLLVVHY---IGDNPGRAADFFRSIQPHLASVTGIHLQCG 232 Query: 155 RATKTKIELDQDYIDERLPVAGKE-----MIYRQVENSFTQPNAAMNIQMLEWALDVTKG 209 R D + +P G + + +R+ F+Q N N ++ AL + Sbjct: 233 RKDSIMHVWGVDSLSYTVPGLGDQGRPLSLSFRR--GGFSQVNYRQNRVLVSKALHLAGV 290 Query: 210 SKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE 268 G +L+L+CGNGNFSL LA +++ E PS+ A+ N N I +V+ I + A Sbjct: 291 GPGRRVLDLFCGNGNFSLPLASGGAQLVGVEDYGPSIDDARKNADFNGIGDVEFIAIDAA 350 Query: 269 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL-DSETEKMVQAYPRILYISCNPE 327 + T+ + E +T+ +DPPR+G D+ E + A RI+Y+SC+P Sbjct: 351 DGTRRLRAAGE------------HFDTVILDPPRTGARDAVGEVAILAPERIVYVSCDPP 398 Query: 328 TLCKNLETLSQT-HKVERLALFDQFPYTHHMECGVLL 363 TL ++L L + ++V D FP T+H+E LL Sbjct: 399 TLGRDLGVLRKAGYRVVGSHGVDMFPQTYHIESVTLL 435 >UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacilli RepID=C6CV49_PAESJ Length = 465 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/279 (29%), Positives = 129/279 (46%), Gaps = 32/279 (11%) Query: 100 VLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKT 159 +LRH + + +++ VV + +KL +AE + +RA V I + T Sbjct: 207 LLRHVMTRTGFVS--GEIMVVLVTNGRKL-----PQAELWVERIRAALPEVKSIVQNVNT 259 Query: 160 KIELDQDYIDERLPVAGKEMIYRQVEN--------SFTQPNAAMNIQMLEWALDVTK-GS 210 + + + + DE + G E+IY +++ SF Q N + I++ A+D + Sbjct: 260 R-DTNVIFGDETKVLWGSEVIYDELDGIRFAISARSFYQVNPSQTIELYRTAVDYAQLTG 318 Query: 211 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF 270 K +++ YCG G SL LAR RV EI ++ A+ N N I N AE Sbjct: 319 KESVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIEDAKRNAELNGISNASFEAGPAEVV 378 Query: 271 TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPET 328 R +GI + I VDPPR G D + +++ P R++Y+SCNP T Sbjct: 379 IPRW-------REEGI-----IPDVIVVDPPRKGCDPALLDTILKMQPERVVYVSCNPST 426 Query: 329 LCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTAK 366 L ++L TL +K + D FP+T H+EC V + K Sbjct: 427 LARDLRTLEDGGYKTVEVTPVDMFPWTSHVECVVWMVRK 465 >UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH77_MOOTA Length = 473 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 20/205 (9%) Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNG 222 +DY++ERL ++ + +F Q N+A + A G+ +L+ YCG+G Sbjct: 278 GRDYLEERL----GDLRFYISATTFFQVNSAQAEVLYNKAATFAGLQGGEEVLDAYCGSG 333 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 +L L+R RV E+ ++ A+ N N++ NV AAE + G Sbjct: 334 AIALWLSRQAGRVEGVEVVPEAIVDARRNSILNNLANVHFRTGAAEAVLPRLAG------ 387 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQTH 340 K Y+ E I +DPPR+G D V R++YISCNP TL ++L L + Sbjct: 388 ------KGYRPEVIILDPPRAGCDRRVLAAVATMEPRRVVYISCNPSTLARDLAHLREAG 441 Query: 341 -KVERLALFDQFPYTHHMECGVLLT 364 K + D FP+THH+EC L Sbjct: 442 FKPGPVQPVDMFPHTHHVECCCFLV 466 >UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M703_9BACT Length = 454 Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 98/356 (27%), Positives = 150/356 (42%), Gaps = 51/356 (14%) Query: 39 SPVS-HYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN 97 SPV YR +A F + F T + +++ P + QL + V++ Sbjct: 114 SPVQWGYRNKASFPVRRTASGETTGFFKMGTHDIVPIETCPLVCDQAAQLYGTLRGLVQD 173 Query: 98 NPV-----------LRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALR-A 145 LRH + + +T + + L+ K D E +LRD R Sbjct: 174 GGFSAYDEKTGRGWLRHIVVRA---STYGSGLLALLVVTSKPDQE---GMASLRDLWRYL 227 Query: 146 QNLNVHLIGRATKTKIELDQDYI-DERLPVAGKEMIYRQVE--------NSFTQPNAAMN 196 Q+ L G A I DE +PVAG + ++ + SF Q N A Sbjct: 228 QSRQPALSGLALSINPSRGNRIIGDETVPVAGTDRVHECLGPFRLEYDGTSFFQVNTAQA 287 Query: 197 IQMLEWALD-VTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAAN 255 ++ ++A V GS+ LELYCG G+ + LAR V A EI P+V A+ N++ N Sbjct: 288 ARLFDYASSLVPDGSR--TLELYCGVGSLTAFLARKSRAVTAAEIWPPAVEMARKNMSGN 345 Query: 256 HIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV-- 313 ++ NV++ AE+ DL Q + + VDPPR+G D E + Sbjct: 346 NLTNVELRLSPAEKLPS--------------DLFEGQ-DCLVVDPPRTGCDGEMLARLAG 390 Query: 314 QAYPRILYISCNPETLCKN---LETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 + I+Y+SCNP TL ++ L++ + FD FP T H+E LL K Sbjct: 391 TSIKSIVYVSCNPATLARDAARLQSAGYQLVTSSVRAFDMFPQTSHVETVALLCRK 446 >UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Alteromonadales RepID=RUMA_PSEHT Length = 441 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 99/379 (26%), Positives = 174/379 (45%), Gaps = 52/379 (13%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGD-D 58 +HL + Q Q+ EK + + + F+ L +++P+ +HYR A + D Sbjct: 93 QHLDSSQ---QVVEKQIAVSKLFEKFAKLDELNWQAPLLSKATHYRRSARLAVMFDKKAK 149 Query: 59 LYHIIFDQQ-TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHK-LFQIDYLTTLSN 116 H+ + +KS I ++ P SE+ + T V +N + +HK L + +L Sbjct: 150 KMHVGYRASGSKSIISINECPVLSEVFANVFT-----VFDNLINQHKALHSVSHLQLCQG 204 Query: 117 --QAVVSLLYHKKLDDEWRQEAEALRDALRAQNL---NVHLIGRATKTKIELDQDYIDER 171 Q V + + K + ++ + AL AQ+ L+ ++ IE + Sbjct: 205 DEQNFVIIRHTKPISEDIK--------ALVAQSAAEQQWQLVWQSESEVIE----HSHLA 252 Query: 172 LPVAGKEMIYRQVE---NSFTQPNAAMNIQMLEWALDVTKGSKGD--LLELYCGNGNFSL 226 +P E + + E N+F Q NA++N ML+ A + KGD +L+L+CG GNFSL Sbjct: 253 MPFYALEELGLKFEFGLNNFIQVNASVNQAMLKQAQNWL-ALKGDENVLDLFCGIGNFSL 311 Query: 227 ALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286 LA+ V+ E +VA A N N I N Q + T + FN+ Sbjct: 312 VLAKQAKTVIGVEGVASAVAMATQNAHTNSITNAQ---FNCFDLTNKIETASWFNK---- 364 Query: 287 DLKSYQCETIFVDPPRSGLDSETEKM-VQAYPRILYISCNPETLCKNLETLSQT-HKVER 344 + + +DP R+G + E++ ++ + ILY+SC+P TL ++ +SQ ++ + Sbjct: 365 -----NLDVLVLDPSRTGAITVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELHK 419 Query: 345 LALFDQFPYTHHMECGVLL 363 + L + FP+T H+E L Sbjct: 420 IGLMNMFPHTGHIETMALF 438 >UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=5 Tax=Cyanobacteria RepID=Y942_THEEB Length = 449 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 88/377 (23%), Positives = 160/377 (42%), Gaps = 42/377 (11%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS-----HYRMRAEFRIWHDGDDLYHIIFD 65 Y QLA K ++ +A L P+ F ++ YR + + + + + Sbjct: 90 YATQLAAKEQLVKDAIARIGHLEPQAFLPILAAPNPFGYRNKVTYPLGRRHGAVVAGYYQ 149 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDY------LTTLSNQAV 119 + + + ++ P +N L+ A+ ++ P+ R + + + + + + + Sbjct: 150 KGSHHLVNLNQCPVQDPRLNPLLAALKQALQPWPIYREQTHEPGFRHLGLRIGQRTGEQL 209 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQ-----NLNVHLIGR--ATKTKIELDQDYIDERL 172 ++L+ L EAE + N N H+ R +T++ + Y+ E + Sbjct: 210 ITLVLAGPLPAGLAAEAEGWLQRFQGVIGVCVNFNHHVGNRIFGDETQVLAGRPYLWEEM 269 Query: 173 PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD-VTKGSKGDLLELYCGNGNFSLALARN 231 AG ++ +F Q N A Q++ D + + L++LYCG G SL LA Sbjct: 270 --AGVR--FQIASTTFFQVNTAQAEQLVTTLRDWIAPTGQERLVDLYCGVGTLSLPLAGA 325 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY 291 V+ E+ SV A N N I+N + AEE+ + Q +D+ Sbjct: 326 VAEVIGVEVHSASVQQAIANAQHNGINNAHFVCAKAEEWLPRYD--------QAVDV--- 374 Query: 292 QCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL--SQTHKVERLAL 347 + +DPPR G D + PR+LY+SC+P TL ++L L + T+++ ++ Sbjct: 375 ----LILDPPRKGCDRAVLDAILHNCPPRLLYVSCHPATLARDLAHLCSTGTYQLAKIQP 430 Query: 348 FDQFPYTHHMECGVLLT 364 D FP T H+E LLT Sbjct: 431 LDMFPQTAHVETIALLT 447 >UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=23 Tax=Firmicutes RepID=Y768_OCEIH Length = 459 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 24/245 (9%) Query: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 K+L +++ Q +++ + Q NV L KTK+ ++YI +++ ++ + Sbjct: 232 KELTEQFPQ-VKSIVQNVNDQRTNVVL---GKKTKVLWGENYIYDKI----GDLTFAISP 283 Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDRVLATEIAKPS 244 SF Q N + + AL+ K D+ ++ YCG G+ SL LA+ +V E+ + Sbjct: 284 KSFFQVNPVQTKVLYDKALEYANIDKDDVVIDAYCGIGSISLFLAQKAKKVYGIEVVPEA 343 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 + A+ N N ++NV+ AE + M +E QG+D + I VDPPR G Sbjct: 344 IEDAKMNAEINGMNNVEFSVGQAE---KVMPKWKE----QGLD-----PDVIVVDPPRKG 391 Query: 305 LDSE-TEKMVQAYP-RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGV 361 D + E M+ P RI+Y+SCNP TL ++L L + +++ D FP T+H+EC Sbjct: 392 CDVDFLEAMIAMKPKRIVYVSCNPSTLARDLRILEDGGFETKQVQPVDMFPSTNHVECVA 451 Query: 362 LLTAK 366 LT K Sbjct: 452 ELTLK 456 >UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VI35_9BACT Length = 456 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 105/382 (27%), Positives = 163/382 (42%), Gaps = 50/382 (13%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP---VSHYRMRAEFRI---WHDGDDLYHII 63 +Y QL +K L + +PF D F +P + HYR + + + G Y + Sbjct: 87 KYSEQLKQKNQLLLELFSPFIDKDVIYFPAPSPQIKHYRNKVFMPVGKNYQTGKITYGMF 146 Query: 64 --FDQQTKSRIRVDSFPAA-SELINQLMTAMIAG-------VRNNPVLRHKLFQID---- 109 F Q ++ P +L N LM + + + LRH F+ + Sbjct: 147 ARFSHQIVEHNTCENHPPIFDQLANSLMEFCLKAKVEPYNEIEHKGQLRHIGFRCNSDGR 206 Query: 110 ----YLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ 165 L TLS + + L KKL E+ Q +++ R Q NV ++G+ TK Sbjct: 207 QILVILVTLSGKLPFTNLLVKKLTTEFPQIKGIIQNINR-QKENV-ILGKETKLL----- 259 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFS 225 Y E L + +R SF Q N ++ + D S +L+ YCG G Sbjct: 260 -YGSENLYDNLCGLKFRINYRSFWQINTGTMEMIISFLQDFVN-SNNVILDAYCGIGAIG 317 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 L+LA RV+ E ++ A+ N N + NV + E+ A+ Sbjct: 318 LSLADKVKRVILLEEFPQAIEDAKENAVLNGLKNVSFVIGKVEDNLSAV----------- 366 Query: 286 IDLKSYQCETIFVDPPRSGLDSET-EKMVQA-YPRILYISCNPETLCKNLETL--SQTHK 341 L + +TI +DPPRSG+ E ++QA +I+Y+SC P TL ++L TL + +K Sbjct: 367 --LIKEKPDTIIMDPPRSGVQQNALEAIIQAEVKQIIYLSCAPMTLARDLNTLIAGEKYK 424 Query: 342 VERLALFDQFPYTHHMECGVLL 363 V L FD FP T H+EC +L Sbjct: 425 VVFLQPFDMFPNTWHIECLAVL 446 >UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTT0_9FIRM Length = 518 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 25/206 (12%) Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGN 223 Q+Y++E++ ++ Y+ SF Q N + A++ + + + + +LY G G Sbjct: 238 QEYLEEKI----NKLYYKLSPASFFQVNREQAENLYNKAMEFLQVKENEKIADLYSGVGT 293 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 SL +A + L EI + ++ A+ N N + + I +EE + + + Sbjct: 294 LSLEIASRKAQTLGVEIVEEAIEDARINAQKNKL-QARFICGKSEEILEKIQTDEKI--- 349 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMV-----QAYPRILYISCNPETLCKNLETLSQ 338 + + I VDPPR G+D +K+V +Y +I+YISCNP TL ++L+ L + Sbjct: 350 --------KMDKILVDPPRKGMD---KKLVDYLNKNSYEKIVYISCNPATLARDLKILKE 398 Query: 339 THKVERLALFDQFPYTHHMECGVLLT 364 +KVE++ +FD FPYT H+E LL+ Sbjct: 399 KYKVEKVEIFDLFPYTSHVEVITLLS 424 >UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36 Tax=Bacteria RepID=RUMA_MANSM Length = 440 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 17/175 (9%) Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVA 246 F Q N+ +N +M+ ALD K D +L+L+CG GNF+L L+R + E V Sbjct: 270 FIQVNSLLNQRMITAALDWLDVQKQDHVLDLFCGMGNFTLPLSRRVKSAVGIEGISAMVE 329 Query: 247 AAQYNIAANHIDNVQIIRMAAEE-FTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A+ N N NVQ R ++ F + FN+ I +DPPR+G Sbjct: 330 KAKANAERNQCQNVQFYRADLDQNFADEVWATEPFNK-------------ILLDPPRTGA 376 Query: 306 DSETEKMVQ-AYPRILYISCNPETLCKNLET-LSQTHKVERLALFDQFPYTHHME 358 + + +ILY+SCNP TL ++ E L+ ++V+++A+ D FP+T H+E Sbjct: 377 AFALNALCRLKAEKILYVSCNPATLVRDAEILLNSDYRVKKVAMIDMFPHTGHLE 431 >UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Roseiflexus RepID=A7NGT5_ROSCS Length = 439 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 83/157 (52%), Gaps = 18/157 (11%) Query: 210 SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 269 ++G LL+LYCG G F+L LARN ++ E +VA A+ + A NHI NV+ I +AE Sbjct: 290 ARGRLLDLYCGAGAFTLPLARNAIEIVGVEEYAGAVADAERSAAVNHISNVRFITGSAEA 349 Query: 270 FTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYP-RILYISCNPE 327 ++G + + +DPPR G +++ P RI+Y+SC+P Sbjct: 350 VLANLDG---------------PFDAVVLDPPRRGCHPRVLHALIERAPRRIVYVSCHPA 394 Query: 328 TLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLL 363 TL ++L+TL + + V R D FP T H+E V L Sbjct: 395 TLARDLKTLIAGGYAVVRATPVDLFPQTPHIESVVAL 431 >UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bacteria RepID=A9KR80_CLOPH Length = 468 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 96/354 (27%), Positives = 160/354 (45%), Gaps = 48/354 (13%) Query: 43 HYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN----- 97 +YR +A+F + D I F I +D+ A + ++ +IA +RN Sbjct: 130 YYRNKAQFPVGKRTDGEVVIGFYAGRTHSI-IDT--AKCHIGDESTEPLIACIRNFLKQE 186 Query: 98 ----------NPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQN 147 ++RH L ++ + T + ++ ++ + K E + ++ L N Sbjct: 187 NISIYDEESHQGLVRHILLRVGFTT---KELMICVVINGK---ELPASDKLIKQILACPN 240 Query: 148 L-------NVHLIGRATKTKIELDQDYIDERLPVAGKEMI----YRQVENSFTQPNAAMN 196 L ++ L KT + L ++ I P + I Y+ SF Q N Sbjct: 241 LPKDFRVTSICLNKNTKKTNVILGEEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQT 300 Query: 197 IQMLEWALDVTKGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAAN 255 ++ E ALD T + +L+ +LYCG G SL LA+ V EI ++ A+ N N Sbjct: 301 KKLYELALDYTDLTGNELVWDLYCGIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLN 360 Query: 256 HIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD-SETEKMVQ 314 I+N + AAEE +++ G K Y + I VDPPR G D S E +V Sbjct: 361 DINNAEFFVGAAEEVLP-----KQYQLSGG---KIYA-DVIVVDPPRKGCDESLLETIVA 411 Query: 315 AYP-RILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTAK 366 P RI+Y+SC+P TL ++L+ L + ++++ DQFP++ H+E LLT + Sbjct: 412 MEPKRIVYVSCDPATLARDLKYLIEHGYDLKKVRPVDQFPHSVHVESVTLLTRR 465 >UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDZ7_9FIRM Length = 484 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 16/198 (8%) Query: 169 DERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLAL 228 ++RLPV ++ SF Q N +QM+ A + + L+E Y G G SL L Sbjct: 258 EDRLPVQFGDVRLSLSCASFFQLNRPQALQMMRMAASLIEPCD-TLVEAYSGVGGISLML 316 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 ++ E +V A+ N N +NV+ + + +E ++ + Sbjct: 317 KEKAKTIIGIEFVPEAVENAKENARLNRAENVRFV---------CGDAAKEMKKI----I 363 Query: 289 KSYQCETIFVDPPRSGLDSE-TEKMVQAYPR-ILYISCNPETLCKNLETLSQTHKVERLA 346 + + + + VDPPR+GLD E + Q P+ I+YISCNP TL KNL+ L ++V+ + Sbjct: 364 RRTKIDAVVVDPPRTGLDGAMIESLRQCQPKQIVYISCNPATLGKNLKELRDLYEVKTVI 423 Query: 347 LFDQFPYTHHMECGVLLT 364 FD FP T H+E VLL+ Sbjct: 424 PFDMFPNTPHVETVVLLS 441 >UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J6R9_DESRM Length = 457 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 79/298 (26%), Positives = 134/298 (44%), Gaps = 37/298 (12%) Query: 82 ELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALR- 140 ELIN +LRH + + + S Q +V L+ +EW+ E R Sbjct: 181 ELINSYKLTPYHWGEKRGLLRHVMIRQGFH---SGQCMVVLVTS---PEEWQAENAFSRA 234 Query: 141 ---------DALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQP 191 +R N N I + ++ ++YI + L + + NSF Q Sbjct: 235 LVARQPKIVSVIRNINRNPGRIVLGEENRVMYGKEYIVDEL----NGLNFNISANSFYQV 290 Query: 192 NAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQY 250 N ++ + A + + + +++ YCG G +L LAR+ V+ EI P+VA A+ Sbjct: 291 NTLQTEELYQKAKEFAQLQGHERVIDAYCGIGTIALYLARSTVEVVGMEIVPPAVADAKE 350 Query: 251 NIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETE 310 N N I N + + A E+ M DLK + + +DPPR G + E Sbjct: 351 NARLNGITNTKFFQGAVEKLLPRM----------AKDLKP---DVVVLDPPRKGCEKEVL 397 Query: 311 KMV--QAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 + PRI+Y+SC+P TL ++L L + ++ ++ D FP+T+H+EC VL+++ Sbjct: 398 TAISESKVPRIVYVSCDPATLARDLGVLDKLGYQTLQVQPVDMFPWTYHVECVVLMSS 455 >UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase protein n=1 Tax=Xanthomonas albilineans RepID=D2U9R4_XANAL Length = 467 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 64/192 (33%), Positives = 97/192 (50%), Gaps = 18/192 (9%) Query: 171 RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALA 229 RLP E+ +R ++ F Q NA +N QM+ AL + GD +L+L+CG GNF+L LA Sbjct: 283 RLPQWDVELAFRPLD--FIQVNAVLNQQMIAHALALLDAQSGDRVLDLFCGLGNFTLPLA 340 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 R V+ E V A+ N N +DN Q A + TQ QG D Sbjct: 341 RTVREVVGVEGDAGLVTRARENAQRNGLDNAQFF---AADLTQDQRQAPWMR--QGFD-- 393 Query: 290 SYQCETIFVDPPRSG-LDSETEKMVQAYPRILYISCNPETLCKNLETL--SQTHKVERLA 346 + +DPPRSG L+ + ++ + RI+Y+SC+P +L ++ L +Q ++ Sbjct: 394 -----KLLLDPPRSGALEVLQQLPLKQFQRIVYVSCHPGSLARDASYLVNTQGFVLKAAG 448 Query: 347 LFDQFPYTHHME 358 D FP+T H+E Sbjct: 449 AMDMFPHTAHVE 460 >UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 Tax=Legionella RepID=RUMA_LEGPL Length = 444 Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 16/177 (9%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDRVLATEIAKPS 244 N FTQ NA +N +M++ A+ + + D+ L+L+CG GNFSL +A++ RV+ E + Sbjct: 272 NDFTQVNAELNRKMVKQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRVIGVEGNRNM 331 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 V A N +NHI NV ++ + N L + + +DPPRSG Sbjct: 332 VERAYMNAKSNHITNVDFYAANLDDVMEVRN------------LVNTSFSKVLIDPPRSG 379 Query: 305 LDSETEKMVQAYP-RILYISCNPETLCKNLETL--SQTHKVERLALFDQFPYTHHME 358 +++ P RI+Y+SCNP TL ++ + L + + + + D FP+T H+E Sbjct: 380 ALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFPHTAHVE 436 >UniRef50_Q72IZ3 Uncharacterized RNA methyltransferase TT_C0988 n=4 Tax=Thermaceae RepID=Y988_THET2 Length = 406 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 65/183 (35%), Positives = 95/183 (51%), Gaps = 25/183 (13%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF+Q N +LE A + G + LELY G+G FSL L+ ++ V+A EI+K +V Sbjct: 242 ESFSQVNPLAAGALLEEARTLVFGGR-RALELYAGSGLFSLLLSPRYEEVVAVEISKEAV 300 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 + + +NV+ +RM A R+ L DL + VDPPR+GL Sbjct: 301 RRGEMDRKRLGAENVRFLRMDA----------RKAEALGAFDL-------VVVDPPRAGL 343 Query: 306 DSETEK-MVQAYPR-ILYISCNPETLCKNLETLSQTHKVERLAL---FDQFPYTHHMECG 360 E +++A PR ILY+SC+P T +++ L Q RLA +D FP+THH+E Sbjct: 344 PPEVRAYLLRARPREILYVSCDPATWARDVGALVQGGY--RLAFARPYDFFPFTHHVEVL 401 Query: 361 VLL 363 LL Sbjct: 402 SLL 404 >UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRA8_9BACE Length = 412 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 98/381 (25%), Positives = 165/381 (43%), Gaps = 46/381 (12%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMR--AEFRIWHDGDDLYHIIFDQQT 68 YE QL K +L+ ++ F + P + HYR + + F W G +L I+ Q T Sbjct: 52 YEEQLKRKQAKLEELLGKFGPVAPILGMEHPWHYRNKVISSF-AWGPGKNLVSGIYAQGT 110 Query: 69 KSRIRVDSFPAASELINQLMTAMI----------------AGVRNNPVLRHKLFQIDYLT 112 + V+ E+++Q + A+ G+ + + RH L + L Sbjct: 111 HRVVPVEQCLLHREVLDQAVAAVRQAAREFRYQPFDENRRTGLIRHVLCRHSLSTGEVLA 170 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRAT---KTKIELDQDYID 169 L + V L + ++ A+ AQN+N G A + KI + YI+ Sbjct: 171 VLVTASPV-LPGARAFAARVKELCPAI--VTLAQNVNPR-PGSAVLGDREKILYGRGYIE 226 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNGNFSLAL 228 + L + +R +SF Q N + A+ + K +L+ YCG G L+ Sbjct: 227 DVL----CGVKFRIAPSSFYQINPVQTEVLYSTAISAARLTGKERVLDAYCGVGTIGLSA 282 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 A + V+ E+ + + A A N AN+I N + A F L G+ Sbjct: 283 AAHAGSVVGVELNRSAAACAVDNAKANNIRNARFRCGDAAAF------------LDGMAA 330 Query: 289 KSYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNLETL-SQTHKVERL 345 + Q + +F+DPPR+G + + + P R +YISCNPET ++LE L ++ + E + Sbjct: 331 RGEQLDVVFLDPPRAGSTPVFLDALCRVSPARAVYISCNPETQRRDLEYLAARGWRAESI 390 Query: 346 ALFDQFPYTHHMECGVLLTAK 366 D FP+T H+E +LT + Sbjct: 391 QGVDMFPHTEHIETVAVLTRR 411 >UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRD2_9SYNE Length = 483 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/158 (37%), Positives = 86/158 (54%), Gaps = 23/158 (14%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNV--QIIRMAAEEFT 271 +++ YCG G F+L LAR + + E + SV AQ N A N I+NV +I +AA Sbjct: 343 IVDAYCGVGTFTLPLARQVKQCIGLESSTESVVQAQENAALNGIENVGFRIGDVAA---- 398 Query: 272 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD-SETEKMVQAYP-RILYISCNPETL 329 L +D+K + + +DPPR G + + E +V P RI+Y+SCNP TL Sbjct: 399 ----------LLPDLDVKP---DILLLDPPRKGCELAVLESIVAIKPKRIVYVSCNPATL 445 Query: 330 CKNLETLSQT--HKVERLALFDQFPYTHHMECGVLLTA 365 ++L LS+T ++V R+ D FP T H+EC V L A Sbjct: 446 ARDLRVLSETGGYRVTRVQPADFFPQTAHVECAVFLEA 483 >UniRef50_A4BBK4 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Reinekea blandensis MED297 RepID=A4BBK4_9GAMM Length = 414 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 89/329 (27%), Positives = 143/329 (43%), Gaps = 50/329 (15%) Query: 39 SPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN 98 +PV YR RA F + G +H +Q I V+ P +I + A++ VR Sbjct: 128 APVG-YRHRARFHLSKSGTLGFHGARGRQV---IPVEQCP----VITTELQALLDRVRRE 179 Query: 99 PVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATK 158 L+ L Q++ + +A + K D RQ E ++A Sbjct: 180 APLK-GLQQLELTVDDAGKAGARAV---KASDSARQAFEQWQNA---------------- 219 Query: 159 TKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLEL 217 QD++ E L + FTQ N +N QML+ + + D LL+L Sbjct: 220 ------QDWLTEELTYQAGTQVVTARPGDFTQVNREINQQMLKQIRQWLQPREDDRLLDL 273 Query: 218 YCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 277 +CGNGN SLA+ +L E + P++ AA+ A H Q + A+ FT + V Sbjct: 274 FCGNGNISLAMLDEVAAILGLESSGPAIEAAK--AAVKHHPKAQFLE--ADLFTSCLQ-V 328 Query: 278 REFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLET 335 R + + +DPPR+G + + + + + R++Y+SC+P TL ++L Sbjct: 329 RP-------QVAEFAPTIAVLDPPRAGAEQVVQWLSELPSLTRLVYVSCDPATLARDLAQ 381 Query: 336 LSQTH-KVERLALFDQFPYTHHMECGVLL 363 L+ H + + L D FP T H+E VLL Sbjct: 382 LTADHWHLRKAGLIDMFPQTRHIETMVLL 410 >UniRef50_Q6ANA2 Related to RNA-methyltransferase n=1 Tax=Desulfotalea psychrophila RepID=Q6ANA2_DESPS Length = 444 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 21/206 (10%) Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGN 221 L DY + L AGK++ + N F Q N N+QM+E L + +L+L+CG Sbjct: 250 LSLDYKPQAL--AGKKISMQWEVNGFCQVNIKQNVQMIETVLAFADIRDEESVLDLFCGM 307 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 GNFS+ LA V E ++ +A+ N N +DN + + + Sbjct: 308 GNFSIPLACQAKAVTGFEGQGSAIRSAKKNALNNGLDNCSFYQKPVHKACAELIA----- 362 Query: 282 RLQGIDLKSYQCETIFVDPPRSG---LDSETEKMVQAYPRILYISCNPETLCKNLETLS- 337 D + Y C + +DPPR G L + K+ Q R++YISC+P TL ++L LS Sbjct: 363 -----DKRVYDC--VIIDPPRQGAPELAGQLAKLCQK--RLIYISCDPATLTRDLAELSK 413 Query: 338 QTHKVERLALFDQFPYTHHMECGVLL 363 Q +++++ D FP T+H+E VLL Sbjct: 414 QGFQIKKIQPIDMFPQTYHIENVVLL 439 >UniRef50_C7GZ13 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ13_9FIRM Length = 399 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/276 (25%), Positives = 130/276 (47%), Gaps = 30/276 (10%) Query: 93 AGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHL 152 +G+R + ++ + + L + ++ V+LL KL++E L L N + Sbjct: 139 SGIRTSEIIVNLVTSSSDLANFNTESFVNLLTSLKLNNE-------LVGILHTVNDKIQD 191 Query: 153 IGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG 212 +I +DY ER+ ++ ++ SF Q N + +A++ + Sbjct: 192 TANGEDIRILYGRDYYMERIM----DLDFKVRMGSFFQTNVQAAENLYRYAINSIDNVQD 247 Query: 213 DLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT 271 ++ +L+CG G + +LA +V+ +I+ ++ +A N N I+NV R E Sbjct: 248 KVIFDLFCGTGTITQSLAGAAKKVIGVDISDDAIKSAIENTKLNKINNVSFYRGDVFEVI 307 Query: 272 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYPR-ILYISCNPETL 329 + +N + + I +DPPR+G++++ EK+V+ PR I+YISCNP+TL Sbjct: 308 RNINE---------------KPDVIVLDPPRAGVNAKALEKIVEFSPREIVYISCNPKTL 352 Query: 330 CKNLETLS-QTHKVERLALFDQFPYTHHMECGVLLT 364 NL + ++ L FD F +T H+E LL+ Sbjct: 353 IDNLYFFEYNRYNIKSLKAFDNFFFTSHVEAVALLS 388 >UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0F7_DESAC Length = 424 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/317 (26%), Positives = 139/317 (43%), Gaps = 22/317 (6%) Query: 44 YRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRH 103 YR R +F+ ++ + + + + I V P + I MTA + + V Sbjct: 120 YRSRVQFKCYNSPQGFILGFYRRGSHNVIDVRHCPVIALPIAAQMTAWRT-LFDGSVYAS 178 Query: 104 KLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL 163 + QID + S+ A+ ++++++ + E L L A + V L+ K L Sbjct: 179 GVSQID-VAVGSDDALRTIVHYRGAETE--AFCAWLAGCLDAVDGAV-LVQTGRKNPQIL 234 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNG 222 Q +D + V M F Q + N Q++ ++ + + D +L+LYCG G Sbjct: 235 LQGQVDLAIRVDEPPMELHYGPGGFAQVHLEQNRQLVARVIEAAEVTAQDAVLDLYCGMG 294 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 NFSL LAR V+ E PS++ A N + N + E F + + R Sbjct: 295 NFSLPLARRAGAVVGVEDYAPSISYADRNRDTLGLTNATFHACSVETF------LGRWRR 348 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPR-ILYISCNPETLCKNLETLSQTHK 341 + I +DPPRSG M++ PR I+Y+SC+ +TL ++L L+Q++ Sbjct: 349 TA---------DVIVLDPPRSGAREAVAGMMRCRPRRIVYVSCDQQTLMRDLTALAQSYT 399 Query: 342 VERLALFDQFPYTHHME 358 V + D FP T H E Sbjct: 400 VTSIQALDMFPQTCHTE 416 >UniRef50_C0W1I3 23S rRNA methyluridine methyltransferase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1I3_9ACTO Length = 396 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 102/211 (48%), Gaps = 25/211 (11%) Query: 160 KIELDQDYIDERLPVAGKEMIYRQVENSFTQPNA----AMNIQMLEWALDVTKGSKGDLL 215 +I L DY+ +L +++ R SF Q N AM Q WA+ + DL Sbjct: 193 EISLYGDYLPFQLGRVKLQLLPR----SFFQTNTFIAHAMYQQAQRWAIALKPDRAVDL- 247 Query: 216 ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN 275 +CG G F+L LA V E++ P++AAA+ A+ ++NV A F+ + Sbjct: 248 --FCGVGGFALFLAATCRAVTGVELSAPAIAAAKRGAVASGLENVDFYAADATSFSISEG 305 Query: 276 GVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV-QAYPR-ILYISCNPETLCKNL 333 G++ R + I V+PPR G+ E + ++ R I+Y SCNP +L K++ Sbjct: 306 GLQLTRR-----------DMIVVNPPRRGIGVELANWINESQARVIIYSSCNPVSLAKDM 354 Query: 334 ETLSQTHKVERLALFDQFPYTHHMECGVLLT 364 E L ++K R +FD FP T H E VLL Sbjct: 355 ELLG-SYKATRARVFDMFPGTDHAEVMVLLV 384 >UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXJ3_9BACL Length = 446 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 77/292 (26%), Positives = 145/292 (49%), Gaps = 29/292 (9%) Query: 83 LINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLD--DEWRQEAEALR 140 LI++L ++ ++ +RH +F+ + TL ++ +V ++ +K + DE+ ++ L Sbjct: 171 LISELNLSVYDENSHSGAIRHIMFRTN---TLKSEIMVGIVAKEKFNKLDEFVEKISKLD 227 Query: 141 DALRAQNLNVH----LIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMN 196 D + + LN++ + KT+ +DYI + L ++ R SF Q N Sbjct: 228 DRIVSIMLNINDKKTNVIFGDKTENLFGKDYITDTLDGIDFKISLR----SFYQVNPVQT 283 Query: 197 IQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAAN 255 + AL++ + + D +++ YCG G SL A+ +V EI + +V A N N Sbjct: 284 EVLYSKALELAELKETDTIIDAYCGIGTISLFAAKKVKKVYGIEIVEAAVLDACENAKNN 343 Query: 256 HIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA 315 +I NV+ + +E+ + +L D+K + + VDPPR G + + + A Sbjct: 344 NITNVEFLLGKSEDVIK---------KLISQDVK---LDAVIVDPPRKGCEESFLRDLAA 391 Query: 316 --YPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLT 364 +I+Y+SCNP TL +++E + +K+ + D FP T+H+E VLL+ Sbjct: 392 MDIEKIVYVSCNPATLARDMEIMRGLGYKLGSVQPVDMFPGTYHVETVVLLS 443 >UniRef50_P33753 tRNA (uracil-5-)-methyltransferase n=17 Tax=Saccharomycetales RepID=TRM2_YEAST Length = 639 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 27/168 (16%) Query: 210 SKGD------LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQII 263 +KGD L++ YCG+G FS+ ++ D+V+ EI+ SV+ A+ N AN ++N + I Sbjct: 482 AKGDDNKTKFLVDAYCGSGLFSICSSKGVDKVIGVEISADSVSFAEKNAKANGVENCRFI 541 Query: 264 RMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILY 321 AE+ + ID S + ++ +DPPR G D K + AY +I+Y Sbjct: 542 VGKAEKL------------FESIDTPS-ENTSVILDPPRKGCDELFLKQLAAYNPAKIIY 588 Query: 322 ISCNPETLCKNLETL------SQTHKVERLALFDQFPYTHHMECGVLL 363 ISCN + +++E H++E + FD FP THH+E ++ Sbjct: 589 ISCNVHSQARDVEYFLKETENGSAHQIESIRGFDFFPQTHHVESVCIM 636 >UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A4B1_PELCD Length = 434 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 94/337 (27%), Positives = 143/337 (42%), Gaps = 30/337 (8%) Query: 30 SDLVPEVFRSPVS-HYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLM 88 S+LV + SP YR R + + + + + + I VD P L+NQ Sbjct: 112 SELVRPIVPSPQQWGYRSRVQLKCLNTPKGFLVGFYRRGSHYVIPVDHCPILHPLLNQAK 171 Query: 89 TAMIAGVRNNPVLRHKLF--QIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQ 146 + + + N R F QID + +Q V + H L ++ L+ + Sbjct: 172 DLLRSWIENT---RWSQFVSQID--LAVDDQERVRAVVHC-LANDVDDFVTHLKPGALSA 225 Query: 147 NLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQML-EWALD 205 N+ + + K ++ ++ + V E+ F Q N N M+ E Sbjct: 226 NMGL-FVQTGRKHNLQHVCGPVELLIEVDTPELRLGYGPGGFAQINLPQNRAMVREVVGT 284 Query: 206 VTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRM 265 + G +L+L+CG GNFSL +AR V+ E S+ A+ N N I+NV Sbjct: 285 LVSNPPGRVLDLFCGMGNFSLPVARLAQEVVGVEAYLQSIEMARLNARLNEIENVSF--F 342 Query: 266 AAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP-RILYISC 324 A E + A E+ IDL + +DPPRSG ++V P RILY+SC Sbjct: 343 AREAYGAAT----EYGADGAIDL-------VIMDPPRSGAYDVARELVTVRPARILYVSC 391 Query: 325 NPETLCKNLETLSQTHKVERLAL---FDQFPYTHHME 358 +P TL ++L L H RL FD FP+THH E Sbjct: 392 DPPTLVRDL--LPLLHNGYRLVWSRPFDLFPHTHHTE 426 >UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RBR4_9CHLA Length = 484 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 14/183 (7%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPS 244 ++F QPN ++ AL ++ S + +LYCG G S+ L++ V+ EI + Sbjct: 308 SAFFQPNTRQAERLYSLALQLSSISTPITVYDLYCGTGTLSICLSKFAKTVVGVEICPEA 367 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 V A+ N A N NV + A E + + E N DL + VDPPR+G Sbjct: 368 VLDARSNAAKNGCSNVHFLCGAVHE---QLTKIIEENLFPLPDL-------VVVDPPRAG 417 Query: 305 LDSET-EKMVQAYP-RILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGV 361 LD + +++ P +ILY+SCNP T N+ L SQ +++E + DQFP+T H+E Sbjct: 418 LDPHALQHLIKLSPKKILYVSCNPLTQVDNISNLISQGYRLEAMQPVDQFPHTIHIENIA 477 Query: 362 LLT 364 +LT Sbjct: 478 VLT 480 >UniRef50_A6GEE5 RNA methyltransferase, TrmA family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GEE5_9DELT Length = 466 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 101/360 (28%), Positives = 153/360 (42%), Gaps = 53/360 (14%) Query: 32 LVPEVFRSPVSH----YRMRAEFRI-WHDGDDLYHIIFDQQTKSRI------RVDSFPAA 80 L PE + P+ YR RA W G D + F +Q K I V + Sbjct: 119 LAPERWLEPLRAEPWAYRRRARLGAKWVAGKDKVVVGFREQDKRFIANLEGCEVLAGRHG 178 Query: 81 SELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALR 140 LI +L + +IAG+ L K+ Q++ V+ L + L+ ++ E LR Sbjct: 179 GALIPKL-SELIAGLS----LATKIPQVEVSVADDTDGAVTALVFRVLEPPTDEDRERLR 233 Query: 141 DALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGK---------------EMIYRQVE 185 A+ L V L + T + L + DER G+ E+ R Sbjct: 234 AFAAAEGLRVFLQSKGLDT-VAL---FADERGQTEGEGFEDARELSYALPEFELDLRFRP 289 Query: 186 NSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPS 244 F Q NAA+N M+ A+++ + +L+L+CG GNFSLALAR V E Sbjct: 290 TDFVQVNAAINRSMIARAVELLALEPEHRVLDLFCGLGNFSLALARRAGAVFGVEGDAGL 349 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 VA A N N + N + E V E L G + + +DPPRSG Sbjct: 350 VARAAANAERNGLSNARF------EVRDLYTQVGELEWLGG-----QPVDRVLLDPPRSG 398 Query: 305 LDSETEKMVQ----AYPRILYISCNPETLCKNLETLSQTH--KVERLALFDQFPYTHHME 358 + E + + PR++Y++C+PETL ++ L TH ++ + D FP+T H+E Sbjct: 399 ALAIVEHIDRIAWAGKPRLVYVACSPETLARDAAVLVGTHGYRLSAAGVMDMFPHTAHVE 458 >UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1I4_HALOH Length = 453 Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 13/154 (8%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 +++ YCG G+ + LA V E+ ++ A+ N A N I+N I+ E+ Sbjct: 309 VVDAYCGAGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKGKVEDKLPE 368 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCK 331 + +D K + + I DPPR GLD ET V P+I+Y+SCNP TL + Sbjct: 369 L-----------VDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPATLAR 417 Query: 332 NLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 +L+ + + + + D FP T+H+EC V L + Sbjct: 418 DLKEIKACYDINEVQPVDLFPQTYHVECVVKLES 451 >UniRef50_Q1MXP1 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Bermanella marisrubri RepID=Q1MXP1_9GAMM Length = 448 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 18/193 (9%) Query: 174 VAGKEMIYRQVENSFTQPNAAMNIQMLEWALD-VTKGSKGDLLELYCGNGNFSLALARNF 232 VAG + + NSF Q N +N QM++ AL + + +L+L+ G GNF+L LA++ Sbjct: 269 VAGMRIHF--ASNSFIQANGRVNEQMVQTALQWLNVKAHETVLDLFAGLGNFTLPLAQHA 326 Query: 233 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 RV A E+ K VA Q+N N + NV + ++ + RL D+ Sbjct: 327 KRVCAVELDKKMVADLQHNAQRNELSNVDV-------QLGNLDNLDAVERLSAADV---- 375 Query: 293 CETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTH-KVERLALFDQF 351 I +DPPR+G + + R+LY++C P +L ++ L ++ K++++ + D F Sbjct: 376 ---IVLDPPRAGAAVIMPWVAKQKSRVLYVACEPSSLIRDAAVLVESGFKLDKVVVLDMF 432 Query: 352 PYTHHMECGVLLT 364 P T H+E L + Sbjct: 433 PQTKHVETMALFS 445 >UniRef50_A9WK13 RNA methyltransferase, TrmA family n=3 Tax=Chloroflexus RepID=A9WK13_CHLAA Length = 416 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 18/183 (9%) Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLAT 238 +I+R SF Q N A +M+ D G LL+ Y G G+F+L LAR +D V+A Sbjct: 238 VIFRLSLGSFFQVNHAQAERMVAVVRDALAPHGGRLLDAYSGVGSFALPLARCYDEVIAV 297 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E +P+V + + N I NVQ I AAE ++G + + Sbjct: 298 EAYQPAVEDGRQSAIDNQITNVQFINGAAEHTVAHLSG---------------PFHAVIL 342 Query: 299 DPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLET-LSQTHKVERLALFDQFPYTH 355 DPPR G + + A+ P+I+YISC+P + ++L L+ +++ + D FP T Sbjct: 343 DPPRRGCHPALIEAIIAHAPPQIVYISCHPGLIGRDLAPLLAAGYQITFVQPVDLFPQTP 402 Query: 356 HME 358 H+E Sbjct: 403 HIE 405 >UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=Sulfurihydrogenibium RepID=C1DTC8_SULAA Length = 420 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 94/388 (24%), Positives = 178/388 (45%), Gaps = 76/388 (19%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDL-VPEVFRSPVSHYRMRAEFRIWHDGDDLYHI 62 +H+P E+ + ++ +++++ Q + DL + +V+ S +YR++ +F+ DG + Sbjct: 78 QHIPYEK-QIEIKKEILKDQLLRIGKVDLPIEKVYPSQPFNYRIKVQFKF--DGKNFG-- 132 Query: 63 IFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLF-------QIDYLTTLS 115 + Q + I +D E NQ++ L+ LF Q+ + Sbjct: 133 FYRQNSNQVIDIDYCYLLKEDFNQIIHP----------LKKFLFKYALSPSQVIVFSNSK 182 Query: 116 NQAVVSLLYHKKLD-DEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPV 174 NQ ++ ++ + E +D + + N+ IG K K +L + Sbjct: 183 NQKLIKFVFPDNSQIANIIPKIEIYKDEI---DENIKGIGFYDKKKRQL----------L 229 Query: 175 AGKEMIYRQVEN--------SFTQPNAAMNIQMLEWALDVT------KGSKGDLLELYCG 220 G+ +I+ V+N SF Q +NI ++ +D+ KG K ++ YCG Sbjct: 230 LGEYVIFETVDNYKYRVSMDSFFQ----VNIYQIKNLIDLVVQEVKDKGYK-RAVDFYCG 284 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G FS+ LA VL E + +V A+ N+ N++ N++ ++ E+ G++ Sbjct: 285 VGTFSVPLANYVREVLGIESNEEAVKDAKTNVRHNNLKNLKFLKAKTEK------GLKY- 337 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDS----ETEKMVQAYPRILYISCNPETLCKNLETL 336 K ++ E + DPPRSGL+ E K +++ +I+YISCNP TL ++L+ Sbjct: 338 -------AKDFKPEVVVFDPPRSGLNKTIIREISK-IESIQKIIYISCNPSTLARDLKDF 389 Query: 337 SQ-THKVERLALFDQFPYTHHMECGVLL 363 + ++++ D FP THH+E V+L Sbjct: 390 KEYGFNPLKVSMVDMFPQTHHIESVVVL 417 >UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FXL7_9FIRM Length = 499 Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 93/185 (50%), Gaps = 16/185 (8%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPS 244 +SF Q N + +AL+ S + +L+ YCG G SLALAR +V A EI + Sbjct: 326 HSFYQVNTPQAEALYRYALEAADLSGSETVLDAYCGIGTISLALARQAGQVYAMEIVPEA 385 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 + A+ N AN + NV AEE A +GI + VDPPR G Sbjct: 386 IDMARANAEANGLSNVTFQAGKAEEVLPAWQA-------EGIHF-----DVAVVDPPRKG 433 Query: 305 LDSETEK-MVQAYP-RILYISCNPETLCKNLETLSQT-HKVERLALFDQFPYTHHMECGV 361 LD E K +++ P +I+Y+SCNP T ++ + L+Q ++++ + D FP T H+E Sbjct: 434 LDPEFVKTLIELAPDKIVYVSCNPATCARDCQLLAQAGYELQWVQPVDLFPKTAHIEVVG 493 Query: 362 LLTAK 366 LL K Sbjct: 494 LLERK 498 >UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE25_KOSOT Length = 440 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 88/176 (50%), Gaps = 18/176 (10%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF Q N + ++L++ S + L+LY G G F+ AR F +V+A E K S Sbjct: 273 SFFQANVFVMEELLKYVQQELNPSPSETFLDLYSGIGTFAFYFARMFKKVVAVEGIKISS 332 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A N N I N++ + M +F ++ + + + +DPPR+G+ Sbjct: 333 RAMLSNARINMISNLEAVNMDTRDF---------------LEKNEEKFDKVILDPPRAGI 377 Query: 306 DSETEKMVQAYP-RILYISCNPETLCKNLETLS-QTHKVERLALFDQFPYTHHMEC 359 + E + +A P RI+YISCNP TL ++ LS + ++ L FD FP THH+E Sbjct: 378 GKDIELIGKALPKRIVYISCNPTTLARDSRYLSNKGFSLKALRAFDMFPDTHHVEV 433 >UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22 Tax=Gammaproteobacteria RepID=RUMA_XANC8 Length = 444 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 18/192 (9%) Query: 171 RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALA 229 RLP E+ +R ++ F Q NA++N +M+ AL + D +L+L+CG GNF+L LA Sbjct: 259 RLPKWDVELAFRPLD--FIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLA 316 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 R V+ E VA A+ N N +DN Q A + TQ QG D Sbjct: 317 RTVREVVGVEGDAGLVARARENAQRNGLDNAQFY---AADLTQDQRQTAWMR--QGFD-- 369 Query: 290 SYQCETIFVDPPRSG-LDSETEKMVQAYPRILYISCNPETLCKNLETL--SQTHKVERLA 346 + +DPPRSG +D + ++ + RI+Y+SC+P +L ++ L Q + Sbjct: 370 -----KLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAG 424 Query: 347 LFDQFPYTHHME 358 D FP+T H+E Sbjct: 425 AMDMFPHTAHVE 436 >UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y1544_PARUW Length = 442 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 106/208 (50%), Gaps = 20/208 (9%) Query: 166 DYIDERLPV-----AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYC 219 D+I E+L + A + + +R ++F QPN ++ AL + S ++ +LYC Sbjct: 244 DHIREKLYLPDFNEAIQTLNFRISPSAFFQPNTEQAEKLYSQALKLADLSASHVVYDLYC 303 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G + A+ V+ E+++ SV A+ N+ N + NV I + + Q + + + Sbjct: 304 GTGTLGICSAKYVKEVIGIELSRESVLDARENVKENGLSNVTI---KSGDVGQVLEALSQ 360 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL- 336 N L+ + + VDPPR GLD++ K + P+++YISCNP+T NL L Sbjct: 361 ENSLKP--------DVVMVDPPRIGLDAKAIKHILDLKAPKLVYISCNPKTQVMNLGPLI 412 Query: 337 SQTHKVERLALFDQFPYTHHMECGVLLT 364 ++++ + DQFP T H+E LLT Sbjct: 413 DGGYQLQIVQPVDQFPQTVHVENITLLT 440 >UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10 Tax=Gammaproteobacteria RepID=RUMA_MARAV Length = 449 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 23/178 (12%) Query: 188 FTQPNAAMNIQML----EWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKP 243 FTQ NA +N M+ EW LDV G + +L+L+CG GNF+L LAR +V+ E Sbjct: 278 FTQVNAGINRNMVHRAVEW-LDVQPGER--VLDLFCGLGNFTLPLARKGGQVVGVEGDDA 334 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 V + N N + NV+ +G G + I +DPPRS Sbjct: 335 MVVRGRENARLNDLSNVEF------------HGADLHGDFTGQSWAKEGFDKILIDPPRS 382 Query: 304 GLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQT-HKVERLALFDQFPYTHHME 358 G + E K + A+ RI+Y+SCNP TL ++ + + +++ + + D FP+T H+E Sbjct: 383 GAE-EICKYLTAFGANRIVYVSCNPATLARDAGVMVRNGYRLVQAGVMDMFPHTTHVE 439 >UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Rickettsiella grylli RepID=A8PP31_9COXI Length = 443 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/182 (33%), Positives = 91/182 (50%), Gaps = 19/182 (10%) Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVA 246 F Q NA +N M++ A+++ D +L+L+CG GNFSL LA V+ E V Sbjct: 275 FIQINATINQAMIQHAIELLSPHFSDRILDLFCGLGNFSLPLALRCQSVVGIEGHSALVE 334 Query: 247 AAQYNIAANHIDNVQIIRMAAEEFTQAMNG--VREFNRLQGIDLKSYQCETIFVDPPRSG 304 A+ N N I+N Q +T + G ++E Q + I +DPPRSG Sbjct: 335 QAKINARHNAINNTQF-------YTADLTGSILKEVWAQQTFN-------KILLDPPRSG 380 Query: 305 LDSETEKMVQ-AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVL 362 +++ + +++YISCNP TL ++ E L Q + +ER + D FP THH E L Sbjct: 381 ALEVIQQIARWKVEKMVYISCNPATLARDSEELIKQGYHLERAGIMDMFPQTHHSEAICL 440 Query: 363 LT 364 T Sbjct: 441 FT 442 >UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Colwellia psychrerythraea 34H RepID=RUMA_COLP3 Length = 469 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 97/383 (25%), Positives = 170/383 (44%), Gaps = 58/383 (15%) Query: 17 EKVVRLQSMMAPFSDLVPEV----------FRSPVSHYRMRAEFRIWHDGDDLYHIIFDQ 66 +K+ L S ++ PE+ +S HYR +A + D + I F Q Sbjct: 107 QKITDLFSRSFSTQNITPEINTAHLPWQAAIKSSPWHYRRKARIGVQFDKNAQATIGFRQ 166 Query: 67 QTKSRIR-VDSFPAASELINQ---LMTAMIAGVRNNPVLRH-KLFQIDYLTTLS------ 115 ++ +++ + S P E ++ L+ ++A + + H ++ Q D T S Sbjct: 167 KSTNQLAAIKSCPVLVEPLSAIFPLLKKLLAQLTVKSAIGHIEVIQADISDTSSADKIQK 226 Query: 116 -NQAVVSLLYHKKLDDE----WRQEAEALRDALRAQNLNVHLIGRATKTKIEL----DQD 166 NQ VV + K ++D W+ L AQ H+I ++ L D Sbjct: 227 DNQVVVVVRQLKPMNDTDIGLWQ---------LYAQRHCWHVIIDDGNKQLPLADIKGGD 277 Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD-VTKGSKGDLLELYCGNGNFS 225 + + +Y N F Q N +N M+ AL + + ++L+L+CG GNFS Sbjct: 278 SFELSYELTDTSKVYFS-SNDFIQINHQVNNAMISQALAWLNILATDNVLDLFCGLGNFS 336 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 LALA++ RV+ E + V A N N +DN Q F QA + N Sbjct: 337 LALAKHAKRVVGVEGMQTMVDKATQNSLVNGLDNCQ--------FYQA-----DLNSHWL 383 Query: 286 ID--LKSYQCETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL-SQTHK 341 ++ ++ + + +DP R+G + ++ + P +LY+SC+P TL ++ L S+ +K Sbjct: 384 LEPWVQGQVFDKVLLDPARAGAEQAVSQIAELKIPCVLYVSCDPATLARDSAILVSKGYK 443 Query: 342 VERLALFDQFPYTHHMECGVLLT 364 +E+++L D F T H+E +L T Sbjct: 444 LEKISLMDMFSQTKHVETMILFT 466 >UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BA92_THEAS Length = 457 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 21/184 (11%) Query: 186 NSFTQPNAAMNIQMLEWALDVT--KGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKP 243 SF Q N +M + +D+ G++ D+LELY G G+ + +A RV+A E Sbjct: 286 TSFFQVNTHQAERMFQHVVDLLDETGAR-DVLELYSGVGSLTGMIAAGGRRVVAVEEWPS 344 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 +V + N+ N I V + AAE+ + G +F + + +DPPR Sbjct: 345 AVEGLRENLQVNGIHGVTPLLGAAEDVLGDLGG--DF-------------QAVVLDPPRG 389 Query: 304 GLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTHKV-ERLALFDQFPYTHHMECG 360 G E + + A P ++Y+SCNP TL ++L LSQ V R+ FD FP T H+EC Sbjct: 390 GCHPEVIRAMVDAAVPHVIYVSCNPATLARDLMLLSQGGYVLRRVRPFDMFPQTCHVECV 449 Query: 361 VLLT 364 L++ Sbjct: 450 TLMS 453 >UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDP0_9FIRM Length = 453 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 83/303 (27%), Positives = 139/303 (45%), Gaps = 43/303 (14%) Query: 81 SELINQLMTAMIAGVR--NNPV-LRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAE 137 SEL NQ++ ++ + + +P LRH L + + T +++ + K DE + Sbjct: 172 SELENQILRSLRSWIEEAGDPAQLRHLLIKHAFKTGQVMVVLIAKSENLKGKDELIERLT 231 Query: 138 ALRDALRAQNLNVHLIGRATKTKI-----------ELDQDYIDERLPVAGKEMIYRQVEN 186 A +R+ LNV+ GR + ++++ + R ++ K Sbjct: 232 AAYPQIRSIILNVN--GREDNVILGDREIVLWGSASIEEELLGLRFQISAK--------- 280 Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGD--LLELYCGNGNFSLALARNFDRVLATEIAKPS 244 SF Q N + A+++ G G+ ++++YCG G L+ AR RV+ EI + Sbjct: 281 SFYQINPVQTEVLYTKAIELA-GLTGEETVIDVYCGTGTIGLSAARKAKRVIGIEIVPSA 339 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 V A+ N N I N EF GV L+ + Q + VDPPR G Sbjct: 340 VEDAKRNAVRNGIANA--------EFICGDAGVCTAQLLE----RRIQPDVAIVDPPRKG 387 Query: 305 LDSET-EKMVQAYP-RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGV 361 LD T + +V+ P RI+Y+SC+P TL ++ L++ + VE + D FP T H+E V Sbjct: 388 LDGTTIDSLVKMNPERIVYVSCDPATLARDCAVLNERGYGVEVVQPVDMFPQTTHVETVV 447 Query: 362 LLT 364 L++ Sbjct: 448 LMS 450 >UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzyme n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PNA0_MYCA5 Length = 449 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 36/233 (15%) Query: 147 NLN-VHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVEN--------SFTQPNAAMNI 197 NLN V ++ KTKI + + +AGKE I +++ SF Q N Sbjct: 234 NLNIVQIVCNEEKTKIL-------KLIVLAGKESIEYKIDKLKFNVSSQSFYQVNEKQTN 286 Query: 198 QM---LEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAA 254 +M L +L++T GS+ +++ + G G + LA+ +V+ EI+K + + N Sbjct: 287 KMYKTLLKSLNLT-GSEF-IVDAFAGVGTIGMYLAKKAKQVVCVEISKKATLNGKENAKL 344 Query: 255 NHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV- 313 N ++N++ I F +E R Q ID+ I DPPR GL+ T + Sbjct: 345 NSLNNLEFISEDCNRFFD-----KECTRRQNIDV-------IVFDPPREGLNKTTINAII 392 Query: 314 -QAYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLT 364 ++ RI YISCNP TL ++L+ S+ +K+E + FD FP T+H+E LL+ Sbjct: 393 PKSLKRIAYISCNPRTLVRDLKLFTSKGYKIEFVQPFDMFPQTYHVETLALLS 445 >UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8Z2_9FIRM Length = 455 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 16/184 (8%) Query: 187 SFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF Q N ++ AL+ + K ++++LYCG G S+ LA+ V+ EI ++ Sbjct: 284 SFYQVNPVQTERLYGKALEFAQLSGKEEVIDLYCGVGTISMFLAQKAKHVIGVEIVDAAI 343 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A+ N N IDN+ + A + + + + + + + + VDPPR G Sbjct: 344 RDAKINAKLNQIDNIDFVCSDAASYAKKL------------EKQGKKPDVVVVDPPRKGC 391 Query: 306 DSET-EKMVQAYP-RILYISCNPETLCKNLETLSQT-HKVERLALFDQFPYTHHMECGVL 362 D T + +V+ P RI+Y+SC+P TL ++++ L + + + + D FP++ H+E VL Sbjct: 392 DDLTLDSIVKMQPKRIVYVSCDPATLARDIKKLDEKGYAAQVVQPVDMFPFSFHVESIVL 451 Query: 363 LTAK 366 L + Sbjct: 452 LQKR 455 >UniRef50_B7CCQ1 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCQ1_9FIRM Length = 406 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 153/354 (43%), Gaps = 55/354 (15%) Query: 42 SHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLM---TAMIAGVR-- 96 +HYR + D +Y ++ + ++ ++ +L+N+++ T ++ ++ Sbjct: 53 THYRNKVIVGFAKDKGKVYSGLYASHSHRVVKTENCIMQPKLVNEIINKITELVGSMKLE 112 Query: 97 ------NNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALR-----A 145 +LRH L + + T ++ +V + +K+ + L Sbjct: 113 LYNERTGTGLLRHVLIRWGHKT---DEVMVVFVTSQKMFPSRKNMVRVLTSEFPQIKTIV 169 Query: 146 QNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQV--------ENSFTQPNAAMNI 197 QN+N KT I L DE + + G MI+ ++ NSF Q ++ Sbjct: 170 QNIN------PRKTSIVLQ----DEAIVLYGNGMIHDELCGLDIAFSHNSFYQIHSEQCE 219 Query: 198 QMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANH 256 + A + + D +L+ YCG G L + + +V+ E+ ++ A+YN N Sbjct: 220 VLYGLAKKMLDLKETDTVLDTYCGVGTIGLTMTDSCKKVMGVEVNPDAIENAKYNAKQNK 279 Query: 257 IDNVQIIRMAAEEFTQAMNGVREF-NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA 315 I N++ + M + EF M R++ NR + I +DPPR+G + + A Sbjct: 280 IKNIEFVAMDSTEF---MRQARKYHNRY----------DAIILDPPRAGTTKDFIECATA 326 Query: 316 Y-PR-ILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTAK 366 PR ILYISC+P T ++L Q + +L L D FPYT H+E +L K Sbjct: 327 LNPRKILYISCDPRTQVRDLNQFRKQGYVTNKLELVDLFPYTDHIESVCVLEKK 380 >UniRef50_B8C918 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C918_THAPS Length = 387 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 20/192 (10%) Query: 177 KEMIYRQVENSFTQPNAAMNIQMLEWALDVT--KGSKGD----LLELYCGNGNFSLALAR 230 K++ +R +F Q N M +M++ +D K S G+ L++ YCG+G F+L + Sbjct: 199 KDLTFRFQAGNFFQNNPFMLPKMVDLVVDAATIKSSSGEAMTHLIDCYCGSGLFALGCSS 258 Query: 231 NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 290 +FD + E+ +V A+ N N I N + +AE + + V K Sbjct: 259 SFDVCVGIEVNDKAVQEARANAELNGIKNCDFVSASAEAIFLSKDPV-----------KG 307 Query: 291 YQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETL-SQTHKVERLAL 347 + + VDPPR G E + + Y R++Y+SC+P T ++ + L + + + + Sbjct: 308 KESTVVVVDPPRKGCSEEFLEQLDEYKPQRVVYMSCDPATQARDAKFLVAHGYDIVSVQP 367 Query: 348 FDQFPYTHHMEC 359 FD FP T H+EC Sbjct: 368 FDLFPQTRHIEC 379 >UniRef50_A5DVM6 Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DVM6_LODEL Length = 407 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 81/161 (50%), Gaps = 21/161 (13%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 L++ YCG+G FS+ + N +V+ E++ SV A++N N+I N I AEE Sbjct: 260 LVDAYCGSGLFSITCSTNVTKVIGVEVSADSVKFARHNATLNNIKNSHFIVGKAEEI--- 316 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCK 331 + ID S Q ++ +DPPR G D + Y +I+YISCN + + Sbjct: 317 ---------FKDIDTPSEQT-SVILDPPRKGCDDVFLNQLSEYKPAKIVYISCNVHSQAR 366 Query: 332 NLETL------SQTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++E + +KVE + FD FP THH+E +L+ K Sbjct: 367 DVEWFLNNTKNGELYKVESIKGFDFFPQTHHVESVAVLSMK 407 >UniRef50_Q8II27 RNA (Uracil-5-)methyltransferase, putative n=4 Tax=Plasmodium RepID=Q8II27_PLAF7 Length = 857 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 19/173 (10%) Query: 204 LDVTKGSKGDLLELYCGNGNFSLA----LARNFDRVLATEIAKPSVAAAQYNIAANHIDN 259 +++ +G K + +L CG G S+ L N ++ +I + S+ +A N N+I+N Sbjct: 693 INIKEGIKNYIFDLCCGTGTISICASNVLKSNDVHIIGIDICESSIISANKNAKMNNINN 752 Query: 260 VQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--- 316 + + EEF Q +E +Q + VDPPR+GL + ++ A+ Sbjct: 753 YKFLHGRVEEFFQ-----KEIKNIQTNNANI----ICIVDPPRNGLANSVLNILSAHHLI 803 Query: 317 PRILYISCNPETLCKNLET---LSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 +I+Y+SCNP TL N+ L++T K++ +A D FP+T H+EC + K Sbjct: 804 NQIIYVSCNPITLINNVTNILFLNETLKIKNMAFVDMFPHTFHLECITNIVKK 856 >UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEY8_SYNFM Length = 488 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 11/155 (7%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 + +LYCG G+ +L++A RV+ E+ ++ A N N I+N + I +E Sbjct: 342 VWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDACVNARLNGIENARFISGDLKE---- 397 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYP-RILYISCNPETLCK 331 N +G + + + DPPR+G+ + +++ P RI+Y+SCNP TL + Sbjct: 398 -----RINHARGPGSGEHHPDIVITDPPRAGMHPQVVGALLEMGPGRIIYVSCNPATLAR 452 Query: 332 NLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 +L ++ +++ + FD FP+T H+EC V + K Sbjct: 453 DLAFFTERYEIGTVRPFDLFPHTPHIECVVRMDRK 487 >UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desulfobacteraceae RepID=A8ZZY9_DESOH Length = 471 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 17/155 (10%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 +++LYCG G ++ L+ V+ EI +A A N N++ NV+ + +E Sbjct: 331 VVDLYCGTGTIAIWLSGAAKEVIGLEINDSCLADAVNNCRTNNVSNVRFVAGDVKE---- 386 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGL--DSETEKMVQAYPRILYISCNPETLCK 331 L +D ++ + + +DPPR+G+ D + + A PRI+Y+SCNP TL + Sbjct: 387 --------TLPRLDCRA---DVLVIDPPRAGMHKDVVEQVLAMAPPRIVYVSCNPATLAR 435 Query: 332 NLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++ LS+ + V + D FP+T H+EC L K Sbjct: 436 DVAMLSEAYTVAEVQPVDMFPHTPHIECVARLDKK 470 >UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJ40_9FIRM Length = 450 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 94/394 (23%), Positives = 176/394 (44%), Gaps = 76/394 (19%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV-SHYRMRAEFRI------------WHDGD 57 YE +L K +++ + PE+F SP+ + YR + E+ H + Sbjct: 89 YEYELKLKQRQIKELFEDVYSEEPEIFESPLKTAYRNKMEYTFADMYKDSPIMLGMHKKN 148 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR---NNPVLRHKLFQ------- 107 Y +I D + + + +D + +I+ + + V+ + +LRH + + Sbjct: 149 RFYEVI-DTKECNLVHIDFEIIRNAVIDFVREKNLPFVKKRTHEGLLRHLIIRYALTTGE 207 Query: 108 --IDYLTT----LSNQAVVSLLYHKKLDDEWRQ----EAEALRDALRAQNLNVHLIGRAT 157 ++ +TT +++ V +L KL+ + E ++L DA+ + +N+ + G+ Sbjct: 208 IMVNIVTTTQSEFDSKSFVDMLLGLKLEGNIKSIVHTENDSLADAVVPEKINI-IFGK-- 264 Query: 158 KTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL--- 214 +YI E++ ++ ++ SF QPN I + A+++ GD+ Sbjct: 265 --------EYITEKIF----DLEFKVTPFSFFQPNVFGAINLYSKAIELC----GDIENK 308 Query: 215 --LELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ 272 +LY G G +AR V EI + +V +A + N + N I E + Sbjct: 309 VVFDLYSGTGTIGQIVARKAKAVYGIEIVEEAVESANKSAKENGLTNCTFIAGDVLEEIE 368 Query: 273 AMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYPR-ILYISCNPETLC 330 NR + +D+ I VDPPR G++ + EK++ + I+YISCNP+T Sbjct: 369 --------NRKEMVDV-------IIVDPPRDGINQKALEKIISCGAKTIVYISCNPKTQK 413 Query: 331 KNLETLSQT-HKVERLALFDQFPYTHHMECGVLL 363 ++++ L Q +K+ L +F+QFP T H E LL Sbjct: 414 RDIQILLQNGYKLITLKIFNQFPRTVHCEAVALL 447 >UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD26_CARHZ Length = 441 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 102/382 (26%), Positives = 164/382 (42%), Gaps = 50/382 (13%) Query: 11 YEAQLAEKVVRLQSMM-------APFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHII 63 YE QL K ++ ++M AP + ++P YR + F + L Sbjct: 84 YEQQLVLKKTKVYNIMKKIGRIDAPINSVLPNF---AFYRYRQKVHFTFGSSQNKLAIGY 140 Query: 64 FDQQ------TKSRIRVDSFPAASELINQLMTA--MIAGVRNNPVLRHKLFQIDYLTTLS 115 FD++ T I S + + +++ A + A + VLRH + + TT Sbjct: 141 FDRKNNWFPVTDCLIADKSLVEVAHYVTEILDAFKLKAYFNDAGVLRHLVVR-KSSTTGE 199 Query: 116 NQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATK------TKIELDQDYID 169 Q V++ + KL+ ++ A + Q+L H + T+ T + YI Sbjct: 200 IQVVITAV---KLNFNVKEIAAKILLNPEIQSLTFHENPKKTREVFGKGTAVTFGTRYIT 256 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLAL 228 E L + YR SF Q N ++ ALD K D++ + Y G G+ +L Sbjct: 257 EEL----LGISYRLTPLSFFQINPVQAEKIYRIALDYLDLGKTDMVFDGYSGVGSLTLPA 312 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 AR V+ E + +V A+ N N I NV EE +L + Sbjct: 313 ARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEE------------KLPWLLK 360 Query: 289 KSYQCETIFVDPPRSGLDSET-EKMVQAYP-RILYISCNPETLCKNLETLSQT--HKVER 344 K Y+ I +DPPR G+ E E++++ P RI+Y+SCNP T ++L+ L++T + VE Sbjct: 361 KGYRFNKIILDPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKILAETGYYPVE- 419 Query: 345 LALFDQFPYTHHMECGVLLTAK 366 + D F T H+E VLL K Sbjct: 420 ITPVDMFSQTMHVENVVLLKKK 441 >UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MPE3_9FIRM Length = 442 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 16/182 (8%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPS 244 SF Q N + AL++ SK D +++LYCG G + A+ +V+ EI + Sbjct: 269 KSFFQVNPYATEVLYVKALELADISKEDTVVDLYCGTGTIGILAAKIAKKVIGIEIVPEA 328 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 + A+ N N DN++ M A++ + + +E ID+ + VDPPR G Sbjct: 329 IDNAKANAQLNCQDNLEFWCMDAQDGAKKIVETKE-----SIDV-------VIVDPPRKG 376 Query: 305 LDSETEKMVQAY--PRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGV 361 ET + +Q +++YISC+P TL ++LE L S KVE + D FP T H+EC Sbjct: 377 CSLETLQAIQKMEPKKMVYISCDPSTLARDLEFLQSMGFKVETVQPVDLFPQTVHVECIA 436 Query: 362 LL 363 L+ Sbjct: 437 LI 438 >UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M217_GEOSF Length = 437 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 17/194 (8%) Query: 175 AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARNFD 233 G E +++F+Q N N+Q++ D K +L+LYCGNGNFS+ LA Sbjct: 255 GGSEKTLFFSKDAFSQINYQQNMQLIRVVSDFAALTGKEKVLDLYCGNGNFSIPLADKAA 314 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 V E +PS+A A+ N N + N+ + + + RE Sbjct: 315 HVTGFEGYEPSIADARKNAEWNGVTNISFHCSDSAAAVKKLAAARE------------TF 362 Query: 294 ETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQTH-KVERLALFDQ 350 + + +DPPR+G +E +QA RI+Y+SC+P TL ++L L + +V + D Sbjct: 363 DVVVLDPPRNGA-AEVMHHIQALNADRIIYVSCDPATLARDLGILKKNGFQVINIQGVDM 421 Query: 351 FPYTHHMECGVLLT 364 FP T+H+E LLT Sbjct: 422 FPQTYHLESVTLLT 435 >UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Methylococcus capsulatus RepID=RUMA_METCA Length = 443 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 97/345 (28%), Positives = 156/345 (45%), Gaps = 56/345 (16%) Query: 37 FRSPVSHYRMRAEFR---IWHDGDDLYHIIFDQQTKSRIRVDS------FPAASELINQL 87 R P YR RA + G +L + F + ++I VD PA E I Q Sbjct: 125 LRGPHWGYRSRARLGARYVAKKGREL--VGFREHASAKI-VDMTDCPVLHPALGERI-QA 180 Query: 88 MTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQN 147 +I G+ LR +L QI+ A+V + L+D ++ L + Q Sbjct: 181 FAELIEGLS----LRERLPQIEAAVGEERTALV----FRVLEDPTAEDFARLARFGKDQG 232 Query: 148 LNVHLI--GRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEW--- 202 L+V++ GR + + + + D + E+ +R FTQ N A+N QM++ Sbjct: 233 LDVYIQREGRDSVAPVYPETAH-DLSYSLPEWEVTFRFGPLDFTQVNMAINRQMIDQVMQ 291 Query: 203 ALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQ- 261 ALD + +L+L+CG GNF+L LAR V E +VA A N A N I NV+ Sbjct: 292 ALDPQPEER--VLDLFCGLGNFTLPLARRAGHVTGVEGGAEAVARAIRNAADNGIGNVEF 349 Query: 262 -IIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--- 317 + ++ E + G RE+++ + +DP RSG +++Q P Sbjct: 350 HVADLSKPESCGSWAG-REYHK-------------VLLDPSRSG----ALEILQCVPNWK 391 Query: 318 --RILYISCNPETLCKNLETLSQ--THKVERLALFDQFPYTHHME 358 RI+Y+SCNP TL ++ L +++ + + D FP+T H+E Sbjct: 392 AGRIVYVSCNPSTLARDAGILVHEYGYRLLKAGVMDMFPHTAHVE 436 >UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Acinetobacter junii SH205 RepID=D0SQB6_ACIJU Length = 469 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 38/192 (19%) Query: 188 FTQPNAAMNIQMLEWA---LDVTKGSKGDLLELYCGNGNFSLALAR---NFDRVLATEIA 241 FTQ N+ +N +M++ A LD+ +G + +L+L+CG GNFSL LAR RV+ E + Sbjct: 286 FTQVNSHVNARMVQLACELLDLKEGER--VLDLFCGLGNFSLPLARCVGETGRVIGVEAS 343 Query: 242 KPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR----LQGIDLKSYQCETIF 297 V A N AN++ A F+Q + ++F+ QG D + Sbjct: 344 DEMVERATENAQANYLTQ-------ASFFSQDLT--KDFSHHSWAKQGFD-------ALL 387 Query: 298 VDPPRSGLDSETEKMVQAYP-----RILYISCNPETLCKNLETLSQ-THKVERLALFDQF 351 +DPPRSG +++Q P RI+Y+SCNP TL ++ L+Q +++++ A+ D F Sbjct: 388 IDPPRSG----AYEVMQYVPNFGAKRIVYVSCNPSTLARDAGVLAQYGYQLKKAAVMDMF 443 Query: 352 PYTHHMECGVLL 363 +T H+E L Sbjct: 444 THTEHVESIALF 455 >UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 Tax=Shewanella RepID=RUMA_SHEPA Length = 445 Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 95/376 (25%), Positives = 160/376 (42%), Gaps = 58/376 (15%) Query: 12 EAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS----HYRMRAEFRIWHDGDDLYHIIFDQQ 67 EAQ K L ++ F+ +P+S HYR RA W D + HI + Sbjct: 100 EAQRKHKANTLVDLVNKFAQTQASEVCAPLSGDAWHYRRRARLATWFD-KNTKHISLGFR 158 Query: 68 TKSR---IRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLY 124 S + + S +E ++ L+ + A + N + L ++ LT N V L Sbjct: 159 ASSSSDVVEIQSCAVLAEPLSALIPDL-AFMLNQLSGKKALGHVE-LTQADNGNFVVLRV 216 Query: 125 HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL---DQDYIDERLPVAGKEMIY 181 K L D +D R L+ A K ++ + D D E L AG++ Y Sbjct: 217 TKVLSD---------KDKAR-------LVEFANKHEVIVLLQDDDAQCEHLNGAGEQPFY 260 Query: 182 RQVEN---------SFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARN 231 + +F Q N +N M+ A++ G+ +L+L+CG GNFSL LA++ Sbjct: 261 ALSGSDIKLNFSPGNFIQVNGPVNQAMVSQAVEWLSPKAGERVLDLFCGIGNFSLPLAKD 320 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIR--MAAEEFTQAMNGVREFNRLQGIDLK 289 V+ E V A+ N + +D V ++A+ + G Sbjct: 321 GAEVIGVEGVVAMVEQARVNAKQSGLDKVAFYHADLSADLSKEPWLG------------- 367 Query: 290 SYQCETIFVDPPRSGLDSETEKMVQAYPRIL-YISCNPETLCKNLET-LSQTHKVERLAL 347 + + + +DP R+G + + + P+ L Y+SCNP +L ++ E L Q ++++++ L Sbjct: 368 --KVDKMLIDPARAGAYESMQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQLKKIGL 425 Query: 348 FDQFPYTHHMECGVLL 363 D FP THH+E L Sbjct: 426 IDMFPQTHHLESMALF 441 >UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) n=3 Tax=Acinetobacter RepID=C0VPT5_9GAMM Length = 463 Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 102/182 (56%), Gaps = 28/182 (15%) Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALAR---NFDRVLATEIAKP 243 FTQ N+A+N +M++ A ++ + +G+ +L+L+CG GNFSL LAR + +V+ E + Sbjct: 286 FTQVNSAVNARMIQLACELLQLKEGERVLDLFCGLGNFSLPLARCVGDTGQVIGVEASDE 345 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR----LQGIDLKSYQCETIFVD 299 V A N AN ++ A F+Q + ++F+ QG D + +D Sbjct: 346 MVLRATENAKANSLNQ-------AIFFSQDLT--KDFSHHPWAKQGFD-------ALLID 389 Query: 300 PPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHH 356 PPRSG E + V ++ RI+Y+SCNP TL ++ L+Q +++++ A+ D F +T H Sbjct: 390 PPRSGA-FEVMQYVPSFGANRIVYVSCNPSTLARDAGVLAQHGYQLKKAAVMDMFTHTEH 448 Query: 357 ME 358 +E Sbjct: 449 VE 450 >UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S2X4_FINM2 Length = 442 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 20/184 (10%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF QPN A Q+ AL++ G ++ +LYCG G + A+ + V+ EI + +V Sbjct: 275 SFFQPNPAQAEQIYTRALELAGDLSGKNVYDLYCGTGTIAQIFAKKSESVIGVEIVEEAV 334 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A+ N N + N + I F + K + + + +DPPR G+ Sbjct: 335 EKAKENAELNGLTNTEFICDDCLNFME----------------KVEKKDVVVLDPPRDGI 378 Query: 306 DSET-EKMVQAYP-RILYISCNPETLCKNLET-LSQTHKVERLALFDQFPYTHHMECGVL 362 + ++++ P + +YISCNP T +L+ + + ++++ L FDQFP T+H E VL Sbjct: 379 HPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYEIKSLEFFDQFPRTYHCEAVVL 438 Query: 363 LTAK 366 L+ K Sbjct: 439 LSRK 442 >UniRef50_A0YBC1 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YBC1_9GAMM Length = 458 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 22/184 (11%) Query: 186 NSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPS 244 + FTQ N A+N +++ + + G K + + +CG GNFSL ++ R + E Sbjct: 282 DDFTQVNPAINHRLVALTIKWLQLGEKDIVADFFCGIGNFSLPISTFVARTVGFEWVASM 341 Query: 245 VAAAQYNIAANHIDNVQ--IIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPR 302 V A+ N NHIDN + +I + A+ +FN+ +DPPR Sbjct: 342 VDKARSNAVFNHIDNCEFKVIDLTADRLVID----EDFNKA-------------LLDPPR 384 Query: 303 SGLDSETEKMVQA-YPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECG 360 +G + +++ ++ RI+YISCNP TL ++ + L+Q +++ L+L D FP T H E Sbjct: 385 AGAEKICKQLAESKLERIVYISCNPRTLARDSKILTQGNYQLTELSLADMFPQTVHSEVV 444 Query: 361 VLLT 364 L T Sbjct: 445 ALFT 448 >UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMB5_9FIRM Length = 448 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 17/179 (9%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF Q N + + A D G+K +LL+LY G G S+ + NF +V+ E+ K +V Sbjct: 267 SFFQVNRFQTENLYKIAKDFLGGNKDKNLLDLYSGIGTTSIYFSENFKKVIGVEVVKDAV 326 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A+ N+ N + NV+ + +EE + + LK+ + I VDPPR GL Sbjct: 327 KDAKENLKLNDVKNVEFLYGKSEEKIEEI-------------LKNNNIDIISVDPPRKGL 373 Query: 306 DSE-TEKMVQA-YPRILYISCNPETLCKNLET-LSQTHKVERLALFDQFPYTHHMECGV 361 D + + ++++ +++Y+SCN TL ++L+ + +++++ L D F T H E V Sbjct: 374 DKKVVDTIIKSNIKKVVYVSCNGATLTRDLKYFIDGGFELKKVKLCDMFSKTGHCEVVV 432 >UniRef50_A9NFK1 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFK1_ACHLI Length = 460 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 22/155 (14%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 +++ Y G+ S +A++ +V A EI + SV +A ++ N+I NV +I+ +F +A Sbjct: 314 VIDAYAGSAPISHYIAKDVKKVYAIEIDQRSVQSAILSLKRNNIKNVTVIQ---SDFKKA 370 Query: 274 MNGVREFNRLQGIDLKSYQCETI---FVDPPRSGLDSETEKMVQAYP--RILYISCNPET 328 LK+ + +TI F DPPR+GL +T K + Y +++Y SCNP T Sbjct: 371 --------------LKNLEVDTIDAMFFDPPRTGLGYDTIKQILKYKPKKLIYGSCNPST 416 Query: 329 LCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 L K+LE L +T++++ L D FPYT +E LL Sbjct: 417 LAKDLEDLLKTYELKSLIPMDMFPYTPLVESVSLL 451 >UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desulfuromonadales RepID=Q3A1Z9_PELCD Length = 489 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/147 (34%), Positives = 79/147 (53%), Gaps = 15/147 (10%) Query: 215 LELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAM 274 L+LYCG G +L LA++ RV+ E+ + +V AQ N A N++ N + + E Q + Sbjct: 341 LDLYCGIGGIALHLAQDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRFLAGDTAELLQDL 400 Query: 275 NGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYPR-ILYISCNPETLCKN 332 +DL S T ++PPRSG D E + + Q PR I+Y+SCNP+TL ++ Sbjct: 401 I----------VDLPSL--ATAVLNPPRSGCDVEVLQAVTQLQPRTIIYVSCNPDTLARD 448 Query: 333 LETLSQ-THKVERLALFDQFPYTHHME 358 L L + ++ + D FP T H+E Sbjct: 449 LAELQKLGYRTAEIQPVDMFPQTAHVE 475 >UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacillus RepID=D2M1T5_BACS4 Length = 469 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 24/205 (11%) Query: 167 YIDERLPVAGKEMI--------YRQVENSFTQPNAAMNIQMLEWALDVTK-GSKGDLLEL 217 + DE + + GKE I + +F Q N ++ + A + + K +++ Sbjct: 269 FGDETIVLYGKEKIEETMSEFRFNLSPRAFFQLNPIQTKKLYDAAKEAAQLTGKEKVVDA 328 Query: 218 YCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 277 YCG G L LA + ++ K S+ A+ N A+ I N + AE Sbjct: 329 YCGVGTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKAHGIKNAHYVSGKAEHL------- 381 Query: 278 REFNRLQGIDLKSYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNLET 335 L + + + + + VDPPR+GLD + +++ P RI+Y+SCNP TL KN++ Sbjct: 382 -----LPEWEKEGWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSCNPSTLAKNVDA 436 Query: 336 LSQ-THKVERLALFDQFPYTHHMEC 359 LS+ +K++ L D FP T +EC Sbjct: 437 LSKGGYKLKALQPVDMFPQTAQVEC 461 >UniRef50_A1SSB8 23S rRNA (uracil-5-)-methyltransferase rumA n=2 Tax=Psychromonas RepID=RUMA_PSYIN Length = 444 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 18/183 (9%) Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVA 246 F Q N+ +N +M+ A+ K D +L+L+CG GNF+L +AR + V+ E + V Sbjct: 275 FLQVNSDINKKMVSQAMQWLALEKNDSVLDLFCGLGNFTLPIARQVESVVGIEGVQQMVD 334 Query: 247 AAQYNIAANHIDNVQIIR--MAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 A N N++ N + + ++ E + + FN+ + +DP R+G Sbjct: 335 RATANAQLNNLQNARFYQADLSGENLIEQEWANQNFNK-------------VLLDPARAG 381 Query: 305 LDSETEKMVQAYP-RILYISCNPETLCKNLET-LSQTHKVERLALFDQFPYTHHMECGVL 362 + Q P ILY+SC+P TL ++ + L + +K+++L L D FP T HME L Sbjct: 382 ALDCLAFIAQKKPSHILYVSCDPLTLARDSQVLLDKGYKLDKLGLLDMFPQTAHMESMAL 441 Query: 363 LTA 365 T Sbjct: 442 FTG 444 >UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01B5 Length = 446 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/205 (30%), Positives = 101/205 (49%), Gaps = 27/205 (13%) Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT--KGSKGDLLELYCGNG 222 +DYI +++ E+ ++ SF Q N + + AL V GS+ +L+ YCG G Sbjct: 260 RDYIMDKI----GELTFKISLLSFFQVNPVQTKVLYDIALGVAALTGSE-TVLDAYCGIG 314 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 SL LA+ RV+ E +VA A N N I NV+ + AE+ +F Sbjct: 315 TISLFLAKEAKRVVGVEAIPQAVANANENAQINGIANVEFVLGNAEDVVLG----EKF-- 368 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQT- 339 + + VDPPR G + + K + A +++YISC+P TL ++++ + + Sbjct: 369 -----------DVVVVDPPRKGCEEDFLKTIVANAPAKMVYISCDPATLARDVKFMYENG 417 Query: 340 HKVERLALFDQFPYTHHMECGVLLT 364 + V ++ D FPYT H+E VLL+ Sbjct: 418 YVVNKVQPVDMFPYTSHVETCVLLS 442 >UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BHH5_9GAMM Length = 449 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 15/179 (8%) Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVA 246 F Q NA++N QM+ A+D D +L+L+ G GNFSL LA V+ E + V Sbjct: 281 FIQVNASVNTQMINRAMDWLDLKDNDRVLDLFSGVGNFSLPLATKAGSVIGVEGVEDMVQ 340 Query: 247 AAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD 306 AQ N ++N + R + +A+ + QG I +DPPR+G Sbjct: 341 RAQNNAKQAGLNNCEFYRADLSKDLKALPWYK-----QGF-------SKILIDPPRTGAL 388 Query: 307 SETEKMVQ-AYPRILYISCNPETLCKN-LETLSQTHKVERLALFDQFPYTHHMECGVLL 363 +++ Q +ILY+SCNP L ++ E + Q +K + + D FP+T H+E VL Sbjct: 389 EVIKQLEQHQCDQILYVSCNPSALARDGAELIRQGYKASKFCVMDMFPHTSHVESLVLF 447 >UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81 Tax=Gammaproteobacteria RepID=RUMA_VIBSL Length = 442 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 90/181 (49%), Gaps = 15/181 (8%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPS 244 N F Q N +N QM+ A++ + + +L+L+CG GNFSL +A+ V+ E Sbjct: 271 NHFIQVNQKVNQQMVAQAIEWLEPQADERVLDLFCGLGNFSLPIAQQSAFVVGVEGVDEM 330 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 V A N A N + N + + EE + +E + + + +DP R+G Sbjct: 331 VQQATANAALNQLSNTEFYQANLEEDLSSQLWAKE------------KFDKVLLDPARAG 378 Query: 305 LDSETEKM-VQAYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVL 362 +++ R++Y+SCNP TL ++ E+L Q +++ +L + D FP+T H+E L Sbjct: 379 ASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGMLDMFPHTSHLESMAL 438 Query: 363 L 363 Sbjct: 439 F 439 >UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=1 Tax=Gloeobacter violaceus RepID=Y3134_GLOVI Length = 457 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 146/343 (42%), Gaps = 55/343 (16%) Query: 44 YRMRAEFRIWHDGDDLYHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVR------ 96 YR ++ F I D I + Q+ RI +D+ P ++ L+ A +R Sbjct: 136 YRNKSTFPIGRDARGEPVIGYYQKDSHRIVPLDACPVQDSRLDPLLAAARELIRTQGWSI 195 Query: 97 -----NNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDA---LRAQNL 148 + LRH +I T Q +++ + + + + A+AL D L L Sbjct: 196 YDEKHHRGALRHLGLRIGERT---GQRLLTFVVNGQTLSGIKPAAQALMDRFADLVGVCL 252 Query: 149 NVH------LIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQ---PNAAMNIQM 199 N H + G +T+ QD+I+E L +R +F Q A + ++ Sbjct: 253 NTHTERGNTIFG--PQTRCLAGQDFIEEVL----DGFRFRIEPTTFFQICTSQAEILARL 306 Query: 200 LEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDN 259 + D T ++ +++ YCG G SL LAR V+ E SV A+ N N I+N Sbjct: 307 VARGADAT--AEQTVVDAYCGIGTLSLPLARAARAVVGIESHVRSVEQARQNARINGIEN 364 Query: 260 VQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYP- 317 + + E L + + + VDPPR G D E E ++ A P Sbjct: 365 CRFLAGTVEAL-----------------LPDLRADIVVVDPPRKGCDPEVLEAILHAVPM 407 Query: 318 RILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMEC 359 R++Y+SCNP TL ++L+ L + + + + D F THH+EC Sbjct: 408 RVVYVSCNPATLARDLKRLVAGGYCLVGVQPVDLFAQTHHVEC 450 >UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMY7_9FIRM Length = 493 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 15/183 (8%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVA 246 +F Q N Q+ A D + +L+LYCG G L++AR +++ EI ++ Sbjct: 278 AFYQVNTPCAEQLYSSACDFAEPKGKTVLDLYCGAGTIGLSMARTAKKIIGVEIVPEAIE 337 Query: 247 AAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD 306 A+ N AN I N + I A E + ++ ++ + + I VDPPR G Sbjct: 338 NAKQNALANGITNCEFICADAAEAARILHS------------RNLRPDVIMVDPPRKGCG 385 Query: 307 SETEKMVQAY--PRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLL 363 + + + A+ PRI+ +SCN T ++ ++ + ++ D F T+H+E VLL Sbjct: 386 RDACEQIAAFSAPRIVMVSCNAATAARDCACFAELGYSTDKCVAVDMFSGTNHVETVVLL 445 Query: 364 TAK 366 + K Sbjct: 446 SHK 448 >UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQ01_9SPHI Length = 476 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 20/204 (9%) Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD--LLELYCGNGNF 224 YI+E++ + + +R SF Q NA + + A + G G + +LY G G Sbjct: 289 YIEEQM----EALTFRIGPKSFYQTNAQQAYNLYKVAREFA-GLTGQERVYDLYTGTGTI 343 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 +L +AR V+ E + SVA A+ N N I N + A + + EF Sbjct: 344 ALFVARLAKHVVGVEYVEASVADARVNAQVNGIANTTFV---AGDMKAILTD--EFFAEH 398 Query: 285 GIDLKSYQCETIFVDPPRSGLD-SETEKMVQAYP-RILYISCNPETLCKNLETLSQTHKV 342 G + + + DPPR+G+D + T ++++A P RI+Y+SCN T ++L L + + V Sbjct: 399 G------RPDVVITDPPRAGMDEAVTRQLLKAAPERIVYVSCNTATQARDLAILDEGYTV 452 Query: 343 ERLALFDQFPYTHHMECGVLLTAK 366 + D FP+THH+E V+LT + Sbjct: 453 TGVQPVDMFPHTHHVENVVVLTKR 476 >UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 n=40 Tax=Clostridia RepID=Y1941_CLOTE Length = 456 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 122/264 (46%), Gaps = 34/264 (12%) Query: 107 QIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD 166 QID+ + + S+ Y L ++L D ++ LN+ L GR D Sbjct: 220 QIDFNLDEYTEIIKSINYKGNLVGILHTINDSLSDVVQCDKLNI-LYGR----------D 268 Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFS 225 YI E L + ++ SF Q N+ ++ D SK + +LYCG G Sbjct: 269 YIIEDL----LGLKFKITPLSFFQTNSKGAEKLYSIVRDFIGESKSKTVFDLYCGTGTIG 324 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 +A +V+ E+ + +V +A+ N N+++N + I A + Q + V++ Sbjct: 325 QIVAPEAKKVIGIELIEEAVESARENAKLNNLNNCEFI---AGDIAQVIKEVKQ------ 375 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQT-HKV 342 + + I +DPPR G+ + + V + P I+Y+SCNP+TL ++L+ L + + + Sbjct: 376 ------KPDVIILDPPRPGVHPKALEYVIKFDSPTIVYVSCNPKTLVEDLKVLVENGYVI 429 Query: 343 ERLALFDQFPYTHHMECGVLLTAK 366 E++ D FP T H+E V L K Sbjct: 430 EKVKGMDMFPSTPHVETVVGLRRK 453 >UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepID=C4Z8C9_EUBR3 Length = 418 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 92/386 (23%), Positives = 162/386 (41%), Gaps = 58/386 (15%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEV-FRSPVSH-YRMRAEF--------------RIW 53 +Y+ QL K ++ ++ PF + P V ++P+ + +++ A F + Sbjct: 56 EYKEQLKTKQAYMKKLLKPFCFVEPIVGMKNPLYYRHKVHAAFDCTRRGQIVAGAYRKNT 115 Query: 54 HDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTT 113 HD D+ + ++Q I D +++ +LRH L + Y T Sbjct: 116 HDVVDIESCMIEEQESDEIIRD----IKDMLRSFRIKTYDEDTGYGLLRHVLVRKGYAT- 170 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALRDA---LRAQNLNVHLIGRATKTKIELDQDYIDE 170 Q +V L+ + +ALR + LNV+ KT + L D Sbjct: 171 --GQIMVVLVLASPILPSKNNFVKALRKKHPNITTVVLNVN----DKKTSMVLG----DR 220 Query: 171 RLPVAGKEMI--------YRQVENSFTQPNAAMNIQMLEWAL-DVTKGSKGDLLELYCGN 221 + + GK I +R SF Q N + E A+ + K +++ YCG Sbjct: 221 NITLYGKGFIEDKLCGCTFRISPGSFYQVNPVQTELLYEKAIHEAHLTGKERIIDAYCGT 280 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G + A+N V+ E+ + ++ A N N I N++ A +F M Sbjct: 281 GTIGIIAAKNAGEVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVEMA------ 334 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNLETLSQ- 338 K + + + +DPPR+G D +V+ P R++Y+SC PETL ++L+ L++ Sbjct: 335 ------QKGEKADVVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLARDLKYLTKH 388 Query: 339 THKVERLALFDQFPYTHHMECGVLLT 364 + V+R +D FP+T H+E LT Sbjct: 389 GYTVKRATPYDCFPFTSHIETVCCLT 414 >UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6H3_COPPD Length = 438 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 121/276 (43%), Gaps = 32/276 (11%) Query: 97 NNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDAL-----RAQNLNVH 151 +N LRH ++ LT V + K ++ + A +L AQN V Sbjct: 181 SNGTLRHLQVRVSLLTGEKQVLVTFTQFPKNFENVAEEILSAGISSLALHQNTAQNKTV- 239 Query: 152 LIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK 211 IG+ + Y+ E+L GK +Y SF Q N ++ ALD + Sbjct: 240 -IGKGAT--LYNGNQYVQEQL--MGK--VYNITPVSFFQINPVQAEKLFSIALDYLEPQP 292 Query: 212 GDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF 270 D++ E Y G G F+L A+ V+A E + +V A N A N++DNVQ + EE Sbjct: 293 EDIVFEGYSGVGAFTLLYAQKVKTVIAAEGVEEAVQQACKNAALNNVDNVQFLAKPVEEA 352 Query: 271 TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPET 328 ++ ++ N+ + VDPPR+G+ E V RI+YISC+P T Sbjct: 353 AGSLQ--QKINK-------------VVVDPPRNGMTQEALNAVARLQPERIVYISCDPST 397 Query: 329 LCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLL 363 L +++ + + + D FP T H+EC LL Sbjct: 398 LARDISRFQPFGYSLNHIQAIDMFPQTTHVECVALL 433 >UniRef50_D1VSU9 RNA methyltransferase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSU9_9FIRM Length = 441 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 20/182 (10%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF Q N + + A D+ +G +L+LYCG G S A+ + VL EI + +V Sbjct: 272 SFFQTNTYSAAYLYQLAFDMIDNLQGKKVLDLYCGTGTISQVFAKKAESVLGVEIVEEAV 331 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 AA+ N N+I NV I A + + +N +D+K+ + I +DPPR G+ Sbjct: 332 NAARENAQYNNISNVDFI---AGDVAKVVN---------DLDIKA---DIIILDPPRVGI 376 Query: 306 DSET--EKMVQAYP-RILYISCNPETLCKNLET-LSQTHKVERLALFDQFPYTHHMECGV 361 ++ +K++ P LYISCNP + K+++ + + +K++++ DQFP T ++E Sbjct: 377 NNPKALDKIIDFSPEEFLYISCNPISYVKDVKRFIERGYKLKKIVGLDQFPRTVNLELIS 436 Query: 362 LL 363 LL Sbjct: 437 LL 438 >UniRef50_B6KDA8 tRNA (Uracil-5-)-methyltransferase domain-containing protein n=3 Tax=Toxoplasma gondii RepID=B6KDA8_TOXGO Length = 426 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 14/154 (9%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 LL+ YCG G F+LA +FD V+ ++ S+ A+YN N + E + A Sbjct: 240 LLDCYCGVGLFALACHDDFDEVVGFDVCSSSIELAKYNAQFNSKWRARF------EVSDA 293 Query: 274 MNGVREFNRLQGIDLKSYQCETIFV--DPPRSGLDSE-TEKMVQAYP-RILYISCNPETL 329 N F+ KS +FV DPPR G DSE +++ P RI+YISC+P T Sbjct: 294 KNFFESFSAGHSSSDKS----RLFVVLDPPRKGCDSEFLLSLLKLKPERIVYISCHPATQ 349 Query: 330 CKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 ++L+ + + V+ + FD FP+T H+EC + L Sbjct: 350 ARDLKAVLPLYTVKNIQPFDMFPHTRHIECVITL 383 >UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Coriobacteriaceae RepID=C8WGH7_EGGLE Length = 461 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 89/185 (48%), Gaps = 30/185 (16%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKG--------DLL--ELYCGNGNFSLALARNFDRVL 236 SF Q N A +++ ++ G G DLL +LY G G FS+ LA+ VL Sbjct: 286 SFFQVNTAQAEKLIACVIEGLGGRMGEDGPEGLDDLLIADLYAGGGTFSVPLAQAGAEVL 345 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 A E A SV + N N +D +++I + RE L G+D + Sbjct: 346 AVEAAGSSVRDLRRNADMNRVD-LEVI---------GGDAARELPELGGLD-------AL 388 Query: 297 FVDPPRSGL-DSETEKMVQAYP-RILYISCNPETLCKNLETL-SQTHKVERLALFDQFPY 353 VDPPR+GL D E + A P R+ Y+SCNP T +++ SQ +++ + D FP Sbjct: 389 VVDPPRAGLADGVVESIAAAAPERVAYVSCNPATWARDVARFESQGYRLTSVQPVDMFPQ 448 Query: 354 THHME 358 T+H+E Sbjct: 449 TYHVE 453 >UniRef50_Q72VP7 Uncharacterized RNA methyltransferase LIC_10249 n=4 Tax=Leptospira RepID=Y249_LEPIC Length = 393 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 18/154 (11%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAA-EEFTQ 272 +++ YCG G SL +A +V+ E S+ +A AN I+NV I+ + Sbjct: 254 VVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKGKVLDTLRA 313 Query: 273 AMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLC 330 A+N + + +DPPR GLD+ET+ ++ +ILY+SCNPETL Sbjct: 314 ALN---------------ENSDVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLL 358 Query: 331 KNLETLSQTHKVERLALFDQFPYTHHMECGVLLT 364 ++ L+++ K E++ D FP+T H+E + T Sbjct: 359 RDAIELTKSFKYEKITPVDLFPHTSHLESVSVFT 392 >UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30E02 Length = 456 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 96/209 (45%), Gaps = 20/209 (9%) Query: 159 TKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLEL 217 T++ DY++E L M +R N+F Q N M ++ A D + + L +L Sbjct: 261 TELIAGSDYLEEEL----NGMSFRVSPNAFFQVNTEMAEKLYALAGDYASLAGFERLYDL 316 Query: 218 YCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 277 YCG G L +A + EI + ++ A N N IDN + V Sbjct: 317 YCGIGTVGLTMAPRAGELWGLEIIEDAIGDAIANARLNEIDNARFF----------AGDV 366 Query: 278 REFNRLQGIDLKSYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNLET 335 R RL +D + + VDPPR+GL + +++ A P R++YISCNP TL N Sbjct: 367 RTALRLL-VDTAG-SPDVVVVDPPRAGLSRKVVRRIIDASPKRLVYISCNPTTLAPNGAQ 424 Query: 336 LSQTHKVER-LALFDQFPYTHHMECGVLL 363 L++ V R + D FP T H+EC L Sbjct: 425 LAEAGYVLRKVRPVDMFPQTPHIECVALF 453 >UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2 Tax=Aquificaceae RepID=Y257_AQUAE Length = 425 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 18/189 (9%) Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEI 240 YR +SF Q N + L+ LD ++ K L +L+CG G F++ L+ + + + Sbjct: 251 YRVSNDSFFQVNYTLWEDFLKEVLDFSESYKKGL-DLHCGVGFFTIPLSEQGNFIEGADA 309 Query: 241 AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP 300 ++ A+YN N+ DNV I A F + E L + VDP Sbjct: 310 NPSAIKDAEYNAKINNRDNV--IFEEATAFKHLKRRIGEVINL------------VVVDP 355 Query: 301 PRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHM 357 PRSGL E ++ +I+YISCNP T ++L+ L++ ++++RL L D FP T+H+ Sbjct: 356 PRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKILTKGGYELKRLKLIDNFPQTYHI 415 Query: 358 ECGVLLTAK 366 E LL K Sbjct: 416 ESIALLEVK 424 >UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D234_PELTS Length = 470 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 70/279 (25%), Positives = 124/279 (44%), Gaps = 28/279 (10%) Query: 96 RNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVH---- 151 R + RH + + + T +V+ + + +E +LR L + N++ Sbjct: 208 RQSRFFRHIVLRKGFFTGEVMAVLVTGSGEWPGEKAFVKELLSLRPGLVSLVRNINDGPP 267 Query: 152 --LIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK- 208 L G+ K++ +++I +RL +I+R +SF Q N + + Sbjct: 268 GVLFGK--KSRCLAGREHIKDRL----GHLIFRISPSSFYQVNPVQTLVLYNKVQQYAAL 321 Query: 209 GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE 268 + +++ Y G G+ +L LA RV E +VA A+ N A N I N + + E Sbjct: 322 TGRETVVDAYSGIGSIALFLAGRAKRVYGLEALPDAVADARKNAALNKITNAEFLTGKVE 381 Query: 269 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQA-YPRILYISCNP 326 + + + E + +DPPR G E E +VQ PR++Y+SCNP Sbjct: 382 SLIPILAA------------QGQRPEVVVLDPPRHGCGREVLEAVVQMQVPRLVYVSCNP 429 Query: 327 ETLCKNLETLS-QTHKVERLALFDQFPYTHHMECGVLLT 364 TL ++L + + V+ + D FP+T H+EC VL++ Sbjct: 430 ATLARDLRYFADNGYLVDEVQPVDMFPWTAHVECVVLMS 468 >UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8X8_9DELT Length = 465 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 13/209 (6%) Query: 158 KTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLE 216 K L +++ERL +E+ YR N+F Q N ++ + S LL+ Sbjct: 263 KIVYSLGNAFVEERLARGEREVRYRLSPNAFFQTNTGGASELFGTVAEFCALSDTHVLLD 322 Query: 217 LYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG 276 LYCG G + LA RV+ E ++ +V A+ + N + N + + E+ G Sbjct: 323 LYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARESARLNGLTNCSFVSGSLEQGIPGFAG 382 Query: 277 VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLE 334 + + + VDPPRSG+ +T + + A PRI+ +SC+P TL ++++ Sbjct: 383 SGD----------QAVPDVVVVDPPRSGMHEKTAEALLALGAPRIVAVSCDPATLARDVK 432 Query: 335 TLSQTHKVERLALFDQFPYTHHMECGVLL 363 L+ + V R+ D FP+THH+E LL Sbjct: 433 RLADRYHVTRVRAVDMFPHTHHIETVALL 461 >UniRef50_B1ZVF8 RNA methyltransferase, TrmA family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZVF8_OPITP Length = 493 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 16/153 (10%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 L++ YCG+G F+LA A F+RV EI++ SV A+ N AAN I N + A Sbjct: 349 LVDAYCGSGLFALASASAFERVAGVEISESSVRFARENAAANGITNASFLAADAA----- 403 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY-PR-ILYISCNPETLCK 331 G+ + + + +DPPR G D E + + A+ PR ++Y+SC+P T + Sbjct: 404 -------AIFAGLAFPAAE-SVVVIDPPRKGCDREFLQQLFAFGPRAVVYVSCDPATQMR 455 Query: 332 NL-ETLSQTHKVERLALFDQFPYTHHMECGVLL 363 +L + L+ +++ + FD FP T H+EC + L Sbjct: 456 DLRDFLAAGYELIAVQPFDLFPQTRHLECVITL 488 >UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaerococcus RepID=C7RHR1_ANAPD Length = 457 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 19/184 (10%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF QPN ++ + A D+ ++ D+L+LY G G + +A+ EI + ++ Sbjct: 288 SFFQPNIYTAEKLYQKAFDLANINQSMDVLDLYSGTGTITQVMAQRARTATGIEIVEEAI 347 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A N N IDN+ + L+ I+ + + I +DPPR+G+ Sbjct: 348 DKAWENAKINEIDNINFLCGDV---------------LEEIEKVGDKYDVIILDPPRAGI 392 Query: 306 DSET-EKMVQA-YPRILYISCNPETLCKNL-ETLSQTHKVERLALFDQFPYTHHMECGVL 362 ++ EK+++ + +YISCNP+T +NL E ++Q +++ ++DQFP + H+E L Sbjct: 393 SPKSLEKILKIDTEKFIYISCNPKTQVENLKEFINQGFEIKDYEIYDQFPKSRHLEAIAL 452 Query: 363 LTAK 366 LT K Sbjct: 453 LTRK 456 >UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 Tax=Lactobacillales RepID=B1N060_LEUCK Length = 473 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 74/245 (30%), Positives = 120/245 (48%), Gaps = 40/245 (16%) Query: 135 EAEALRDALRAQ---------NLNVH----LIGRATKTKIELDQDYIDERLPVAGKEMIY 181 EA+ + ALRA+ N+N H ++G+ +T D+ I ++L GK+ I Sbjct: 243 EADNIAAALRAKLPELKSFIHNINNHDTNVIMGQWNETVWGADE--IHDQL--MGKDFII 298 Query: 182 RQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLALARNFDRVLATEI 240 NSF Q N + A + D++ + Y G G +L++A +V E+ Sbjct: 299 G--PNSFYQINPQTTAVLYTLAAEKAGLKPTDVVVDAYSGIGTITLSIADQVAKVYGVEV 356 Query: 241 AKPSVAAAQYNIAANHIDNVQIIRM-AAEEFTQ-AMNGVREFNRLQGIDLKSYQCETIFV 298 + +V A+ N NHIDNV+ + A E+ TQ A +G++ + +FV Sbjct: 357 VEDAVLDAEKNAQNNHIDNVEFVTADAPEQMTQWAADGLKP--------------DVVFV 402 Query: 299 DPPRSGLDSETEKMVQAY-PR-ILYISCNPETLCKN-LETLSQTHKVER-LALFDQFPYT 354 DPPR GL +E V A P+ +YISCNP TL ++ ++ L++ ++ + DQFP T Sbjct: 403 DPPRKGLTNELISAVSAMQPKTFVYISCNPATLARDTVQILAEGFHIDGPIQPIDQFPQT 462 Query: 355 HHMEC 359 H+E Sbjct: 463 THVES 467 >UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SWR8_9FIRM Length = 495 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 94/382 (24%), Positives = 171/382 (44%), Gaps = 52/382 (13%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMR--AEFRIWHDGDDLYHIIFDQQT 68 YE QLAEK + +++ F + + HYR + A FR G+ + ++++ T Sbjct: 126 YEQQLAEKQKYIDDLLSVFGPVDKIIGMENPYHYRNKVTAAFRRMKSGE-IISGVYEEGT 184 Query: 69 KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTL-----------SNQ 117 + + V++ E ++ +++ + +++ D T L + Q Sbjct: 185 HNILPVENCYVEDEKAAAIIRTFAGLIKS---FKLQIYNEDTGTGLIRHLQIRVGRKTGQ 241 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDA-----LRAQNLNVH----LIGRATKTKIELDQDYI 168 +V ++ + + A+AL A QN+N+ +IG + ++ + YI Sbjct: 242 IMVIIVTASPVFPSKKNLAKALVTAHPEITTVVQNINMKDTSMVIG--DRNQVVYGKGYI 299 Query: 169 DERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWAL---DVTKGSKGDLLELYCGNGNFS 225 ++ L GK +R SF Q N + A+ D+ K K +++ YCG G Sbjct: 300 EDIL--CGKR--FRISPGSFYQVNPEQTEVLYGKAIKYADLKK--KETVIDAYCGIGTIG 353 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 +A + +V+ E+ + +V A+ N+ N I NV I A F V + Sbjct: 354 IAASDRAKKVIGVELNEAAVHDARVNVKMNKIQNVDIYSNDAGRFM-----VDVADEGDS 408 Query: 286 IDLKSYQCETIFVDPPRSGLDSE--TEKMVQAYPRILYISCNPETLCKNLETLSQ-THKV 342 ID+ +F+DPPRSG E + + R++YISC PE+L ++L+ +++ ++V Sbjct: 409 IDV-------VFMDPPRSGSTEEFMSSVITLGPKRVVYISCGPESLARDLKYMTKHGYQV 461 Query: 343 ERLALFDQFPYTHHMECGVLLT 364 R+ D FP T +E VLLT Sbjct: 462 IRMTPVDMFPLTRGVETVVLLT 483 >UniRef50_A5IZA4 Hypothetical RNA methyltransferase n=2 Tax=Mycoplasma RepID=A5IZA4_MYCAP Length = 446 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 18/156 (11%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 +L+ YCG G SL LA+ +V EI K +V A+ N N I N + I + + + Sbjct: 296 VLDAYCGIGTISLFLAQKAKKVYGLEIVKEAVINAKENALDNSIYNTEFI---SGDVIKT 352 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCK 331 ++ + E + +T+ VDPPRSGL SE K++ P I YISCNP T+C+ Sbjct: 353 IDSINE------------KIDTVVVDPPRSGLSSEFLNKIIDIKPEEIGYISCNPHTMCR 400 Query: 332 NLETLSQT-HKVERLALFDQFPYTHHMECGVLLTAK 366 +++ L + +++ L D F T+H+E +L K Sbjct: 401 DIDQLIKAGYELSFLRPCDMFSQTYHIEMVAVLKLK 436 >UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E7Z6_MACCJ Length = 459 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 25/210 (11%) Query: 169 DERLPVAGKEMIYRQVEN--------SFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYC 219 DE + +AG+E I Q+++ SF Q N + + D + ++++ +C Sbjct: 258 DETIVIAGEETIREQLQDHIYDLSAESFFQLNPRQTVVLYNEVRDAAALTGQENVVDAFC 317 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQI-IRMAAEEFTQAMNGVR 278 G G + LA N V + + + A YN N DN + + A+E+ + + Sbjct: 318 GTGTIGIWLADNAGEVRGMDTNEDGIVNAIYNATLNGADNCKFEVGDASEKLNEWIE--- 374 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV-QAYPR-ILYISCNPETLCKNLETL 336 + + + I VDPPR+GL T K++ + P+ +Y SCNP TL K+L L Sbjct: 375 ----------EGFYPDVITVDPPRTGLSEATIKLINEIKPKTFVYTSCNPSTLAKDLAHL 424 Query: 337 SQTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++ +VE + D FP T +E V LT K Sbjct: 425 TKAFQVEYIQPVDMFPQTAQVEAVVKLTRK 454 >UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clostridiales RepID=D2RLZ0_ACIFE Length = 458 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 73/250 (29%), Positives = 116/250 (46%), Gaps = 30/250 (12%) Query: 126 KKLDDEWRQEAEALRDALRAQNLNVH----LIGRATKTKIELDQDYIDERLPVAGKEMIY 181 K L RQE + QNLN ++G K K+ I +RL GK + Sbjct: 230 KDLTALLRQEIPGFTTLV--QNLNTRHTNVIMG--PKNKVIWGPGVIHDRL---GK-FTF 281 Query: 182 RQVENSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARNFDRVLATEI 240 +SF Q N ++ E AL K +++ YCG G +L LA+ R L EI Sbjct: 282 TISPHSFFQVNTLQAEKLYETALQYAALTGKEKVIDAYCGTGTITLFLAQKAKRALGIEI 341 Query: 241 AKPSVAAAQYNIAANHIDNVQIIRM-AAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 299 +P++ A+ N N + NV + AA+E + VR+ +R + + +D Sbjct: 342 VEPAIRDARQNARDNQVSNVDFLCGDAAKEMPEL---VRQGSRP----------DVVVLD 388 Query: 300 PPRSGLDSET-EKMVQAYP-RILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHH 356 PPR+G + E + + P R++Y+SCNP +L ++ L + V ++ D FP+T H Sbjct: 389 PPRAGCEQRVLEAIAKVRPQRVVYVSCNPASLARDAAILRDKGFVVRKVQPVDMFPHTSH 448 Query: 357 MECGVLLTAK 366 +E LLT + Sbjct: 449 VETVCLLTLR 458 >UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinella chromatophora RepID=B1X3H7_PAUCH Length = 448 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 88/314 (28%), Positives = 138/314 (43%), Gaps = 45/314 (14%) Query: 72 IRVDSFPAASELINQLMTAMIAGVRNN--PVLRHKLFQIDYLT----TLSNQAVVSLLYH 125 + +D+ P I+ L+ + A + + P+ H L I +L L+N+ +++L+ Sbjct: 155 VNMDNCPLLDPRIDTLVEPIKADLETSHWPIDIHSLNGIRHLCLKVGILTNEIIITLVSS 214 Query: 126 -------KKLDDEWRQE-AEALRDALRAQ-NLNVHLIGRATKTKIELDQDYIDERLPVAG 176 KL W Q + + L Q NL+ IG +TKT + ++ ER Sbjct: 215 HDRMPGISKLAQHWMQRWPQVVGVCLNLQPNLDNVAIGSSTKTIA--GRPWLIERF---- 268 Query: 177 KEMIYRQVENSFTQPN---AAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFD 233 + R ++F Q N A + L L+V+ G K +L+ Y G G SL LA Sbjct: 269 CNLNLRIASDTFFQINTLQAERAVNFLASILNVSTGPK--ILDAYSGVGTLSLPLAAAGA 326 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 VL E+ SV A+ N N I + + + E + L Sbjct: 327 NVLGLELRYSSVIHARLNAKLNSITSARFEHVDVAE---------------ALALHLPSS 371 Query: 294 ETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLE--TLSQTHKVERLALFD 349 + + VDPPR GL+ E K + A P + +Y+SCNP TL ++L TL+ KV + D Sbjct: 372 DALIVDPPRKGLELEVIKQIIANPADQTVYLSCNPSTLARDLRLLTLAGNIKVTFIQPID 431 Query: 350 QFPYTHHMECGVLL 363 FP T H+EC +L Sbjct: 432 FFPKTTHVECLTIL 445 >UniRef50_A7HAH0 (Uracil-5)-methyltransferase n=4 Tax=Anaeromyxobacter RepID=A7HAH0_ANADF Length = 482 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 12/196 (6%) Query: 171 RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALAR 230 R+P + R + F Q N N ++ ALD+ D+LEL+CG GNF+ LA Sbjct: 295 RVPGDAASGVQRSRPDVFQQANRGANALLVRAALDLLAPDGLDVLELHCGAGNFTGPLAA 354 Query: 231 NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 290 V A E+ P++ A+ ++A NV+ A + A+ F R G + Sbjct: 355 RARWVAAVEVQGPALELARADLAG--AGNVRF--FAGDALKLAL----AFAREGGPSARR 406 Query: 291 YQCETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQTH-KVERLALF 348 + +DPPR G + + PR +Y+SC+P T +++ +T ++E + Sbjct: 407 FG--AALLDPPREGAKGIGPALRELGLPRTVYVSCDPATFARDVRACVETGFRLEAVQPV 464 Query: 349 DQFPYTHHMECGVLLT 364 D FP THH+E LL Sbjct: 465 DMFPQTHHVEAVALLV 480 >UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUT8_SYNWW Length = 419 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 24/185 (12%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 +F Q N +M+ L + S +L+ +CG G+ +L LAR +RV+ E +P++ Sbjct: 249 GAFFQVNHCQAEEMIRLILSLVDFSGKTVLDAFCGVGSIALNLARQAERVIGVESYEPAI 308 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A+ N I NV+ I E ++ + ID+ I +DPPRSG Sbjct: 309 HDARSNAIEAGIYNVEFIHGFCERVVARID--------EPIDV-------IVLDPPRSGC 353 Query: 306 DSETEKMVQAYPR-----ILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMEC 359 E ++QA R I+Y+SCNP TL ++L Q ++ + D FP T+H+E Sbjct: 354 KKE---LIQACSRISPREIVYVSCNPATLARDLALFGQLGYRPLLIQPIDMFPRTYHVET 410 Query: 360 GVLLT 364 VL++ Sbjct: 411 VVLMS 415 >UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCA6_9FIRM Length = 455 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/185 (32%), Positives = 88/185 (47%), Gaps = 18/185 (9%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF Q N + AL+ S + + +LYCG G SL LAR +V+ E + +V Sbjct: 284 SFFQVNPLQTEVLYNKALEYANLSGTETVFDLYCGIGTISLFLARKAAKVVGVESVEAAV 343 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A+ N N+I N + AE R F + Y + + VDPPR G Sbjct: 344 HDARENANVNNIKNAEFHTGTAETVVP-----RLFK-------QGYHADVVVVDPPRKGC 391 Query: 306 DSETEKMVQAY--PRILYISCNPETLCKNLETLSQT--HKVERLALFDQFPYTHHMECGV 361 D + + A RI+Y+SCNP TL ++L+ L Q + +E + D FP+T H+E V Sbjct: 392 DEKLLATIAAMRPQRIVYVSCNPATLARDLKYLQQNGYNPIEAQPV-DMFPHTSHVETVV 450 Query: 362 LLTAK 366 LL K Sbjct: 451 LLERK 455 >UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=9 Tax=Thermotogaceae RepID=Y1094_THEMA Length = 439 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 18/154 (11%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 +L+LY G G FS+ + + RV++ E ++ +V A + N N N++ + +F + Sbjct: 297 VLDLYAGIGTFSVRTSFSAARVISVESSRVAVKAGKANANINSRKNIEYVEQDVLDFLKN 356 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCK 331 +G + + I +DPPRSG E K + + RI+Y+SC+P TL + Sbjct: 357 YSG---------------RADRIILDPPRSGAGPEVMKEIARLSPERIVYVSCDPSTLVR 401 Query: 332 NLETLSQT-HKVERLALFDQFPYTHHMECGVLLT 364 +L+ L + + + R+ FD FP T+H+E V L Sbjct: 402 DLKVLVENGYSIVRVKPFDMFPQTYHVETAVTLV 435 >UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BS02_9GAMM Length = 450 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 86/184 (46%), Gaps = 17/184 (9%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPS 244 FTQ N A+N ++E A+ + D +L+LYCG GNF+ +AR V+ E Sbjct: 271 TDFTQVNPAVNHALVERAIALLALQPQDRVLDLYCGLGNFAFCIARQVASVVGLEGDDAL 330 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 V A+ N A N I NV R G+ E LQ + + +DPPRSG Sbjct: 331 VERARENAARNAITNVVFQR------ADLSRGIAELAHLQRDGVSR-----VLLDPPRSG 379 Query: 305 LDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ--THKVERLALFDQFPYTHHMECG 360 +E + A RI+Y+SC P TL ++ L +++ + D FP+T H+EC Sbjct: 380 A-AEVLADIAALRAERIVYVSCGPSTLARDAGRLVHEYGYRLAAAGVMDMFPHTAHVECI 438 Query: 361 VLLT 364 L Sbjct: 439 TLFV 442 >UniRef50_UPI000196C3B9 hypothetical protein CATMIT_02351 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C3B9 Length = 479 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 23/195 (11%) Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLAT 238 M ++ SF Q N + AL + +++ YCG G L ++N +V+ Sbjct: 196 MTFKISPRSFYQINHDQCEALYSKALSLITVKDPKIMDTYCGIGTIGLIASKNAKQVIGV 255 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF-TQAMNGVREFNRLQGIDLKSYQCETIF 297 E+ K +V A+ N N ++N++ I+ A EF +A Q +D+ + I Sbjct: 256 ELNKDAVKDAKLNKTFNKVENIKFIQGDATEFMVEAAK--------QKVDV-----DVII 302 Query: 298 VDPPRSGLDSETEKMVQA----YPR-ILYISCNPETLCKNLETLSQ-THKVERLALFDQF 351 +DPPRSG TE ++A P+ I+Y+SC+P T ++L+ + + + + +D F Sbjct: 303 MDPPRSG---STETFIKAAVSLKPKEIVYVSCDPHTQVRDLKLFRKLGYDFKDVYPYDMF 359 Query: 352 PYTHHMECGVLLTAK 366 P+T H+E VLL+ K Sbjct: 360 PFTSHVETVVLLSHK 374 >UniRef50_Q29DJ3 GA17699 n=7 Tax=Drosophila RepID=Q29DJ3_DROPS Length = 631 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 25/194 (12%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 +F Q N + + A+D+ +K +L++ CG G +LA A++ RVL EI ++ Sbjct: 386 AFFQINTEGANVLYQQAIDLVAPTKDTTMLDICCGTGTIALAFAKHCKRVLGVEIVPDAI 445 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE--FNRLQG--IDLKSYQCETIFVDPP 301 AQ+N AN I N + A++F ++M VRE + + G +DL VDPP Sbjct: 446 KDAQFNAEANGIKNCKFFTGNADDFIKSM--VREAMYEQEPGKPVDL------IAVVDPP 497 Query: 302 RSGLDSETEKMVQ---AYPRILYISCNPETLCKNLETL----SQTHKVERL-----ALFD 349 R+GL + + ++ A R++Y+SCNP + +N L S+ +K E D Sbjct: 498 RAGLHNRSIAAIRSASAINRLVYVSCNPHSAKRNFIELARPESKHYKGEPFYPKSAVAVD 557 Query: 350 QFPYTHHMECGVLL 363 FP+T H E +L Sbjct: 558 MFPHTTHTELVILF 571 >UniRef50_A5CXB2 RNA methyltransferase, TrmA family n=2 Tax=Gammaproteobacteria RepID=A5CXB2_VESOH Length = 439 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 14/182 (7%) Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVA 246 F Q N +N QM+ A+++ + ++ D +++L+CG GNF+L +AR V+ E V Sbjct: 269 FVQVNFKLNQQMVSLAVELLELNESDKVIDLFCGLGNFTLPIARYAKYVVGIEGDLGLVE 328 Query: 247 AAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD 306 A+YN N I+NV R + V F +G K+Y +DP RSG Sbjct: 329 RAKYNAEKNSINNVDFYR------SDLCKEVVGFEWFKG---KTYN--KALIDPSRSGAI 377 Query: 307 SETEKMVQ-AYPRILYISCNPETLCKN-LETLSQTHKVERLALFDQFPYTHHMECGVLLT 364 E + + R++Y+SCNP TL ++ L+ + +E + D FP T H+E L Sbjct: 378 EIVELLPKLGVTRLVYVSCNPATLARDTLKLIKLGFTLETAGVIDMFPQTSHVESIALFV 437 Query: 365 AK 366 + Sbjct: 438 KR 439 >UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 Tax=Bacillales RepID=YFJO_BACSU Length = 466 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 16/160 (10%) Query: 210 SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 269 K +++ YCG G + +A V ++ K S+ A+ N + + N + AE Sbjct: 317 GKEKVVDAYCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTAEH 376 Query: 270 FTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDS---ETEKMVQAYPRILYISCNP 326 + L + ++ + + VDPPR+G DS +T K V+ R +Y+SCNP Sbjct: 377 W------------LPKWTKEGFRPDVVIVDPPRTGCDSTFLDTIKKVKP-KRFVYVSCNP 423 Query: 327 ETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 TL K+L+TLS+ ++V+ + D FP T H+E L K Sbjct: 424 STLAKDLQTLSKDYRVDYIQPVDMFPQTAHVEAVARLVLK 463 >UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CT87_9CLOT Length = 506 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 17/182 (9%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGD--LLELYCGNGNFSLALARNFDRVLATEIAKPS 244 SF Q N A +++ AL+ G G+ + +LYCG G SL LA+ +V EI + Sbjct: 326 SFYQVNPAQTVKLYGTALEYA-GLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQA 384 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 + A+ N N I+NV+ AEE REF K + I VDPPR G Sbjct: 385 IEDARRNAKINGIENVEFFVGKAEEVLP-----REFEE------KQIYADVIVVDPPRKG 433 Query: 305 LDSET-EKMVQAYP-RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGV 361 D + +V+ P R++Y+SC+ TL ++++ L + VER+ D F + H+E + Sbjct: 434 CDEVCLDTIVKMGPKRVVYVSCDSATLGRDVKYLGERGFVVERVRGCDMFGGSGHVETVI 493 Query: 362 LL 363 ++ Sbjct: 494 MM 495 >UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E7H7_9ACTN Length = 442 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 22/177 (12%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF Q N ++E ++ + +L ++LYCG G F+L LAR D V A E P+V Sbjct: 275 SFFQVNTKGAEILIELVMEALDPQEDELAVDLYCGAGTFTLPLARRCDFVAAVEAYGPAV 334 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 + N+ N +DNV +I + VREF + + VDPPR+GL Sbjct: 335 RDLRRNLEINKLDNVDVI---------GGDAVREF--------PDQDADVLVVDPPRAGL 377 Query: 306 DSETEKMVQAYPR--ILYISCNPETLCKNLETLSQ--THKVERLALFDQFPYTHHME 358 E ++ + + Y+SC+P TL ++L+ + T ++ D FP T H E Sbjct: 378 APEAIDLIASTSAHDVAYVSCDPATLARDLKRFVEEGTFSPVKITPVDLFPQTFHCE 434 >UniRef50_B5JSQ3 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSQ3_9GAMM Length = 452 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 151/361 (41%), Gaps = 31/361 (8%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGD-DLYHIIFDQ 66 TE L + + R Q+ + P L V YR RA W D YH+ F + Sbjct: 106 TEHKRQSLLDTLAR-QANIRPHRCLDSAVLNRDGLGYRSRARLACWFDSRRQQYHLGFRR 164 Query: 67 QTKSRIR-VDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQID-YLTTLSNQAVVSL-- 122 I + P E IN+L+ + + L+ +L ID +L + V+L Sbjct: 165 AGSHTIEPISQCPILVEPINRLIPHLRDALPQW-RLKKRLGHIDAFLNESPSGPQVALCL 223 Query: 123 -LYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIY 181 L LDD +A L AQ N+ L R ++E D + E+ Sbjct: 224 RLNQAPLDDS---KAVMLN---FAQQHNITLAWR-DDHRVETLHGDSDLTYYLLDGELKL 276 Query: 182 RQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEI 240 F+Q N +N +M+ A++ G +L+ +CG GNFSLALA +VL E Sbjct: 277 SLGWGEFSQANRGLNREMVRTAVEQLHVPPGAHVLDAFCGVGNFSLALANGGAKVLGLEG 336 Query: 241 AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP 300 + V A++N N + + M +G+ L GI +DP Sbjct: 337 SDNMVEKARHNARDNGFELCEFKTMN----LMHSDGIGRHT-LDGI-------HHALLDP 384 Query: 301 PRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHM 357 PR G +++ + R+LYISCNP T ++ E L + ++ + L+D FP+THH Sbjct: 385 PRDGASELCQRLAREPELQRVLYISCNPATFSRDAEHLVNGGFTLDTVQLWDLFPHTHHS 444 Query: 358 E 358 E Sbjct: 445 E 445 >UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=131 Tax=Enterobacteriaceae RepID=RUMA_PECCP Length = 449 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 115/250 (46%), Gaps = 30/250 (12%) Query: 122 LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRA-TKTKIELDQD-YIDERLPVAGKEM 179 LL + LD + +ALRD Q ++V+L A + T + D+ Y+ VAG + Sbjct: 213 LLVLRHLDPLHPADEQALRDFAEQQGVSVYLAPDADSLTCLHGDEPVYL-----VAGLTL 267 Query: 180 IYRQVENSFTQPNAAMNIQM----LEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRV 235 + F Q N A+N QM L W LDV + +L+L+CG GNF+L LA+ V Sbjct: 268 AFS--PRDFIQVNDAVNQQMVAQALAW-LDVQPQDR--ILDLFCGMGNFTLPLAQRAASV 322 Query: 236 LATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCET 295 + E V + N N + NV E+ V QG D Sbjct: 323 VGVEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQQPWV-----AQGFD-------K 370 Query: 296 IFVDPPRSGLDSETEKMVQAYP-RILYISCNPETLCKNLET-LSQTHKVERLALFDQFPY 353 I +DP R+G E++ + P R++Y+SCN TL ++ + L+ + +A+ D FP+ Sbjct: 371 ILLDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGFTLVNVAMLDMFPH 430 Query: 354 THHMECGVLL 363 T H+E L Sbjct: 431 TGHLESMALF 440 >UniRef50_A1RGE6 23S rRNA (uracil-5-)-methyltransferase rumB n=170 Tax=Gammaproteobacteria RepID=RUMB_SHESW Length = 389 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 17/182 (9%) Query: 186 NSFTQPNAAMNIQMLEWALD-VTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPS 244 SF Q N + Q+ + A + V + + L +L+CG G F L A + EI + Sbjct: 220 KSFFQTNPQVAAQLYQTAREWVAEFAPKSLWDLFCGVGGFGLHCATKDIALTGIEIEAEA 279 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 ++ AQ + ++ VQ + + + +F Q N + + I V+PPR G Sbjct: 280 ISCAQISANLMGLEKVQFMALDSTDFAQGKNAAD-------------KPDLIIVNPPRRG 326 Query: 305 L-DSETEKMVQAYPR-ILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVL 362 + ++ + + + PR ILY SCNP+TL K+LE + Q + + ++ LFD FP+T H E + Sbjct: 327 IGEALCQSLSEFAPRAILYSSCNPKTLAKDLEHI-QGYHLTKVQLFDLFPHTDHFEVLAM 385 Query: 363 LT 364 L Sbjct: 386 LV 387 >UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n=176 Tax=Firmicutes RepID=Y363_BACC1 Length = 460 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 24/186 (12%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF Q N + + L+ K + +++ YCG G+ SL LA+ +V EI ++ Sbjct: 287 SFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGIGSISLFLAQKAKKVYGVEIVPEAI 346 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ----CETIFVDPP 301 A+ N A N++ N + GV E + + K Y+ +T+ VDPP Sbjct: 347 EDAKRNAALNNMTNAEF-------------GVGE---AEVVIPKWYKEGVIADTMVVDPP 390 Query: 302 RSGLDSET-EKMVQAYP-RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHME 358 R G D ++ P R++Y+SCNP TL ++L+ L + +K + + D FP+T H+E Sbjct: 391 RKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEGGYKTQEVQPVDMFPHTTHVE 450 Query: 359 CGVLLT 364 C VL++ Sbjct: 451 CVVLMS 456 >UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14 Tax=Shewanella RepID=RUMA_SHEDO Length = 468 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 99/188 (52%), Gaps = 25/188 (13%) Query: 186 NSFTQPNAAMNIQMLEWA---LDVTKGSKGDLLELYCGNGNFSLALA---RNFD--RVLA 237 +F Q NA +N +M+E A LD+ G + +L+L+CG GNFSLALA +N D V+ Sbjct: 292 GNFVQVNAEVNQRMVEQAVNWLDLQVGER--VLDLFCGVGNFSLALANRGQNLDGLEVIG 349 Query: 238 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 E V A+ N N++ N+ + + ++ + ++ + + Sbjct: 350 VEGVPEMVQQARENAKRNNLANLSFYH---ADLSADLSNEKWLGKI----------DKLL 396 Query: 298 VDPPRSGLDSETEKMVQAYPR-ILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTH 355 +DP R+G + + + P+ ++Y+SCNP +L ++ L SQ +++++L++ D FP TH Sbjct: 397 LDPARAGAFESLQWLQKMKPKKVVYVSCNPASLARDSSVLLSQGYQLKQLSMIDMFPQTH 456 Query: 356 HMECGVLL 363 H+E L Sbjct: 457 HIEAMALF 464 >UniRef50_UPI0000E0E6C1 23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U1939, SAM-dependent n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E6C1 Length = 484 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 91/176 (51%), Gaps = 15/176 (8%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPS 244 + F Q NA++N M+ ++D+ + D +++L+CG+GNFS+ +A+ + VL E + Sbjct: 314 DDFIQVNASLNQAMIYTSIDLLALAPDDRVVDLFCGSGNFSVPIAKQTEYVLGIEGVEAM 373 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 V A A+ +DNV + A ++AM+ + K+ +C + +DP R G Sbjct: 374 VQQANQGAVASGVDNVTFLH-ADLTTSEAMHAI-----------KAAKCNKLLLDPSREG 421 Query: 305 LDSETEKM-VQAYPRILYISCNPETLCKNLE-TLSQTHKVERLALFDQFPYTHHME 358 + ++ +Q + RI+Y+SCNP++ +++ L + FD F T H E Sbjct: 422 AKAILAQVDLQQFERIVYVSCNPQSWVHDIQLLLDAGFACQHTQFFDMFAGTTHTE 477 >UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chromatiales RepID=D0L0T9_HALNC Length = 442 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 18/173 (10%) Query: 189 TQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAA 248 T N AM +Q LEW LDV G +L+L+ G GNF+L +AR +V A E+ + V Sbjct: 275 TDVNRAMIVQALEW-LDVQPGDH--VLDLFAGLGNFTLPIARKAAKVTAVELDEHMVKRG 331 Query: 249 QYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSE 308 + AAN I N + + + E + ++Y + + +DPPR+G ++ Sbjct: 332 AQSAAANGITNTE----------HVIGNLFEPDPTHLWMQQTY--DRVLLDPPRAGAEAM 379 Query: 309 TEKMVQAYP-RILYISCNPETLCKNLETLSQTHKVERLA--LFDQFPYTHHME 358 + + P RI+Y+SC+P +L ++ L + H +A + D FP+T H+E Sbjct: 380 MPHIARFAPERIVYVSCHPGSLARDAHILVREHGYRLIAAGVMDMFPHTSHIE 432 >UniRef50_C6R4A2 23S rRNA-methyltransferase RumB n=2 Tax=Micrococcaceae RepID=C6R4A2_9MICC Length = 377 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 116/254 (45%), Gaps = 32/254 (12%) Query: 122 LLYHKKLDDEWRQEAEALRDAL-RAQNLNVHLIGRATKTKIELDQDYI-DER--LPVAGK 177 +L KKL R++ + L++ L L+V+L+ R ++E D++ I ER LP+ Sbjct: 141 VLRSKKLLVPIRRQMDWLQEQLPNLAVLSVNLL-REPVARVEGDEEIILSERQTLPMQVN 199 Query: 178 EMIYRQVENSFTQPNA----AMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFD 233 ++ SF Q N AM Q EW +V S L +LYCG G F+L A D Sbjct: 200 DLTLHLRPQSFFQTNTKVAEAMYAQGREWVREVAPRS---LWDLYCGVGGFALHAASVMD 256 Query: 234 --RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY 291 V EI+ +VA+AQ +A ++ V A EF + V + Sbjct: 257 GGSVTGIEISAEAVASAQRTVAEYGLEGVGFSAQDAPEFAVSSGTVPQM----------- 305 Query: 292 QCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQTHKVERLALFD 349 + V+PPR G+ ++ R++Y SCN TL K+LE + V+ L D Sbjct: 306 ----LVVNPPRRGIGESLCAWIEGSGIDRVVYSSCNAVTLAKDLERMPSYAPVQGRVL-D 360 Query: 350 QFPYTHHMECGVLL 363 FP+T H E VLL Sbjct: 361 MFPHTDHYEVMVLL 374 >UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6H3_HYDS0 Length = 415 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 91/376 (24%), Positives = 166/376 (44%), Gaps = 55/376 (14%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE-----VFRSPVSHYRMRAEFRIWHDGDDL 59 H Y QL +K L+ + ++ E ++ P HYR R +F++ + +L Sbjct: 75 HFQHIDYTEQLTQKSNILKETLKKIGNIEIENLNGIIYDEPY-HYRNRVKFKVRNK--EL 131 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRH--KLFQIDYLTTL--- 114 + D+ ++V+ P +S+ IN LM P L+ K F +++ Sbjct: 132 GFVGVDEDF---VKVEHCPISSKAINDLM----------PFLKEFAKHFNPSWISVFYSD 178 Query: 115 -SNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLP 173 + +V + +D +++ + ++ L +N+ + + K + D+ + P Sbjct: 179 TQKEYMVKFASYDYID---KEKLKKFKEHLTPKNVVGITLVKDDKRE---DKIILSIGTP 232 Query: 174 VAGKEMI---YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALAR 230 E++ YR NSF Q N + ++L+ L+ + +L+ Y G G F L LAR Sbjct: 233 FTFIELLKIKYRISVNSFFQVNIKVAQKLLQTLLE-KENYFDRVLDDYGGVGLFGLHLAR 291 Query: 231 NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 290 V +I K S+ A+Y+ N+I+NV + F + Sbjct: 292 RSGSVDIADINKSSINDAEYSAKINNINNVSFYVQNSYVFLKK---------------SL 336 Query: 291 YQCETIFV-DPPRSGLDSETEKMVQ-AYP-RILYISCNPETLCKNLETLSQTHKVERLAL 347 Y+ + V DPPRSGL E ++ P I YISC P +L ++L+ L + ++++ + + Sbjct: 337 YKHANLLVLDPPRSGLSKEEIGLILLGKPDYIWYISCEPSSLARDLKLLGKKYQIKEIYM 396 Query: 348 FDQFPYTHHMECGVLL 363 D FP T+H+E V L Sbjct: 397 ADMFPQTYHIETAVKL 412 >UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFJ7_ACHLI Length = 451 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 16/155 (10%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 +++ Y G S + ++ + A EI + +V +A+ ++ NHIDNV +I F A Sbjct: 311 VVDAYAGIAPISHYIGQDAKHIYAIEINEDAVKSAKISLDQNHIDNVTVIE---NNFEDA 367 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCK 331 ++ +LK + + + DPPRSGL + + + Y R++Y SCNP TL K Sbjct: 368 LD-----------NLKDIKIDVMLFDPPRSGLGEDVIQTILKYKPKRLVYGSCNPSTLAK 416 Query: 332 NLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 +L L + + ++ + D FPYT +E LL K Sbjct: 417 DLSLLLEDYDLKHITPIDMFPYTSLVESITLLELK 451 >UniRef50_C7RGV6 RNA methyltransferase, TrmA family n=4 Tax=Anaerococcus RepID=C7RGV6_ANAPD Length = 415 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 18/153 (11%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 LL+L+CG+G S+AL N D ++ EI K ++ A+ N N++ + + I A Q Sbjct: 275 LLDLFCGSGISSIAL--NDDNIVGIEINKSAIKDAKENAKINNLTDYKFIDKNANYIDQK 332 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCK 331 ++ + +T+ VDPPR+GLD E K + I+YISCNP+TL + Sbjct: 333 F-------------IEKEKIQTVTVDPPRAGLDKEIIKTLAKTKIKNIIYISCNPQTLAR 379 Query: 332 NLET-LSQTHKVERLALFDQFPYTHHMECGVLL 363 +++ + + ++++ + D FP T H+E L+ Sbjct: 380 DIKRFMDRGYELKEIKAVDMFPQTMHVEAIALI 412 >UniRef50_B2UQE8 RNA methyltransferase, TrmA family n=4 Tax=Verrucomicrobia RepID=B2UQE8_AKKM8 Length = 407 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 82/153 (53%), Gaps = 16/153 (10%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 L++ YCG+G F+L+LA+ F +VL E+++ S A+ N +N I++ + + A Sbjct: 264 LVDAYCGSGLFALSLAKKFKKVLGVEVSETSADWARSNARSNGIEHAEFL---------A 314 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCK 331 + F R +D + + + +DPPR G +E + A+ +++Y+SCNP T + Sbjct: 315 ADAGAIFAR---VDFPAEK-TAVVIDPPRKGCSAEFLAQLFAFGPGKVVYVSCNPATQIR 370 Query: 332 NLETLSQT-HKVERLALFDQFPYTHHMECGVLL 363 +L + + V + FD FP T H+EC V L Sbjct: 371 DLAEFDKAGYFVTAVQPFDLFPQTKHLECVVTL 403 >UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMX5_9FIRM Length = 383 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 16/190 (8%) Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATE 239 +R +SF Q N A ++ ++A+ K +K D LL+ Y G G + + +V E Sbjct: 204 FRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIGTIGIIASDYVKQVQGIE 263 Query: 240 IAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 +V A N N + N+ R A EF + + + + + Sbjct: 264 YNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKAKL------------GTHYDAVIL 311 Query: 299 DPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHH 356 DP R+G D + +V+ P RI+YISCNP T ++L+TL++ + V + FD FP+T H Sbjct: 312 DPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKKYTVTDIQPFDMFPHTRH 371 Query: 357 MECGVLLTAK 366 +EC V ++ K Sbjct: 372 VECVVSMSRK 381 >UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W3B9_NEICI Length = 461 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 91/379 (24%), Positives = 152/379 (40%), Gaps = 69/379 (18%) Query: 13 AQLAEKVVRLQSMMAPFSDLVPEVFRSP----VSHYRMRAEFRIWHDGDDLYHIIFD-QQ 67 AQ+A K ++ + + P+ P V HYR RA F + D + F ++ Sbjct: 99 AQVAFKQRIMEEQLERIGKVKPKQILPPIYGHVWHYRDRARFSVSLDKSCRLKLGFQAKK 158 Query: 68 TKSRIRV-----------DSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSN 116 T + + D PA EL+ L + R F T+ N Sbjct: 159 TNDVVGISSCMLIPKPVSDKLPAIRELLQDL-------AEGGSIARFAEFYRGSEITVLN 211 Query: 117 QAVVSLL-----------YHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ 165 A S L + +L D+W+ + + + G+ ++ Sbjct: 212 IAFKSKLRQNDESRIRQWFDSELSDDWQ--------------IWLQIEGKVSEPFYPQKD 257 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWA---LDVTKGSKGDLLELYCGNG 222 + LP G EM +R FTQ N N M+ A LD+ +G + + +L+CG G Sbjct: 258 TILKYTLPEFGIEMPFR--PGDFTQINTDTNRLMVSRAIKMLDIRQGER--VADLFCGLG 313 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 NFSL +A++ V+ E A+ V A+ N N Q +AA F N V + + Sbjct: 314 NFSLPIAKSGASVVGVEGAENLVGRARQNARLNGCGG-QTDFIAANLFDCTENTVASWGK 372 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETL-SQT 339 + + +DPPRSG + Y +I+Y+SCNP TL ++ L + Sbjct: 373 F----------DKMLIDPPRSGAYEVVRSLKPPYLPKKIVYVSCNPSTLARDAGVLVEKG 422 Query: 340 HKVERLALFDQFPYTHHME 358 + + ++ + + F +T H+E Sbjct: 423 YILGQVGIMNMFAHTSHVE 441 >UniRef50_Q821Q5 Uncharacterized RNA methyltransferase CCA_00883 n=14 Tax=Chlamydiaceae RepID=Y883_CHLCV Length = 401 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 105/202 (51%), Gaps = 28/202 (13%) Query: 172 LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDV--TKGSKGDLLELYCGNGNFSLALA 229 LP G ++ SF QP + +++E A + +GS+ LL+LYCG G + L+ Sbjct: 212 LPKDGNSGVFHVRPRSFFQPQSLQGAKIIEIAKEFMNPQGSE-TLLDLYCGAGTIGIMLS 270 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 +V+ EI ++ +A+ NI N +N +I + E+ + F R + Sbjct: 271 AYVKKVIGVEIVPDAIDSAKENILINKKEN--LIEVYLED-------AKTFCR------R 315 Query: 290 SYQC---ETIFVDPPRSGLDSETEK-MVQAYP-RILYISCNPETL---CKNLETLSQTHK 341 C + + +DPPR G+ ++ K +++ +P +I+YISCNP+ C +L +S + Sbjct: 316 HQDCPPPDVVVIDPPRCGIQNKVLKYLLRIFPKKIIYISCNPKIQFEECCSL--ISAGYH 373 Query: 342 VERLALFDQFPYTHHMECGVLL 363 ++++ DQFP++ H+E +LL Sbjct: 374 IKKVQPLDQFPHSPHLENIILL 395 >UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clostridiales RepID=A9KRF2_CLOPH Length = 554 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 22/191 (11%) Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARNFDRVLAT 238 ++R SF Q N ++ + A+ K +++ YCG G L ++N VL Sbjct: 375 VFRISSKSFYQVNPVQTERLYQLAIKAAGLTGKERVIDAYCGIGTIGLVASKNAKEVLGV 434 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E+ K ++ A N N I N A EF AM K + + + + Sbjct: 435 EVNKEAIKDAIANAKRNGITNEHFYNSDATEFMLAM------------AEKGEKADVVIM 482 Query: 299 DPPRSGLDSETEKMVQAY-----PRILYISCNPETLCKNLETLS-QTHKVERLALFDQFP 352 DPPR+G TE+ + A R++YISCNP TL ++L+ + + ++V+ D FP Sbjct: 483 DPPRAG---STEQFIDAVESVQPSRVVYISCNPVTLQRDLKYFTKKGYQVKEAWPVDMFP 539 Query: 353 YTHHMECGVLL 363 +T H+E LL Sbjct: 540 WTGHVETVCLL 550 >UniRef50_Q4PA00 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PA00_USTMA Length = 574 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 71/250 (28%), Positives = 121/250 (48%), Gaps = 39/250 (15%) Query: 139 LRDALR-----AQNLNVHLIGRATKTKI--ELDQDYIDERLPVAGKEMIYRQVEN---SF 188 LRD+LR A++L V RAT ++ ELD + + + + ++ + E+ +F Sbjct: 334 LRDSLRTYGSFAEDLLV-TEERATDGQVHKELDTEVVTDHKATVKERVLTTKFESPAGTF 392 Query: 189 TQPNAAMNIQMLEW---ALDVTKGSKGD-------LLELYCGNGNFSLALARNFDRVLAT 238 Q N ++ +L++ A+ + G+ L++ YCG+G FSL LA F V Sbjct: 393 FQNNRSILPSLLDYVREAITSASSTTGEDSAQARYLVDAYCGSGLFSLCLASLFREVSGV 452 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 EI+ S+ A N N I N + + AE+ F +++ K+ T+ + Sbjct: 453 EISSESIKYATKNAELNGITNTKFLAGNAEDI---------FGKIEYPADKT----TVII 499 Query: 299 DPPRSGLDSE-TEKMVQAYPR-ILYISCNPETLCKNLETL---SQTHKVERLALFDQFPY 353 DPPR G D E ++V P+ I+Y+SCN T +++ L +K++ + D FP Sbjct: 500 DPPRRGCDQEFIRQLVNLAPKHIVYVSCNVHTQARDVGQLISKDPRYKIKSVRGADLFPQ 559 Query: 354 THHMECGVLL 363 THH+E +L Sbjct: 560 THHVEGVAVL 569 >UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=11 Tax=Lactobacillus RepID=Y1698_LACJO Length = 450 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 20/183 (10%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF Q N+ ++ + A+ D+ ++ Y G G L++A++ V E+ +P+V Sbjct: 277 SFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGLSVAKHVKAVRGMEVIEPAV 336 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQ--AMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 A N N I N + + AEE A G++ + IFVDPPR Sbjct: 337 EDANANAKLNGITNAEYVVGKAEEVMPRWAKEGLK--------------TDVIFVDPPRK 382 Query: 304 GLDSE-TEKMVQAYP-RILYISCNPETLCKNLETLS-QTHKVERLALFDQFPYTHHMECG 360 GL E + V+ P +I+YISCNP T+ ++L+ Q + + + D FP T H+E Sbjct: 383 GLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGYDFDEIDPVDMFPQTPHVEAV 442 Query: 361 VLL 363 +L Sbjct: 443 AVL 445 >UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25 Tax=Pseudomonadaceae RepID=RUMA_PSEPF Length = 461 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 89/371 (23%), Positives = 158/371 (42%), Gaps = 33/371 (8%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSH----YRMRAEFRI-WHDGDD 58 +HLP + QLA K L ++ + PE + +P++ YR RA + W Sbjct: 103 QHLP---HNEQLALKQRMLAEQLSRVAGAEPEEWAAPLTGPEFGYRRRARIAVRWDSKAK 159 Query: 59 LYHIIFDQQ-TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + F ++ + + P + + +MT + +R K + ++ S Sbjct: 160 KLEVGFRAAGSQDIVAISECPVLVQPLQPIMTRLPEMLRR----LSKPQALGHVELFSGS 215 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGK 177 ++ LL H E + L+D + L G ++ D + L Sbjct: 216 SLAVLLRHMAPLSE--ADLTILKDFCAFHEAQLWLHGEGEPQPVD-DAQSLGYHLEQWDL 272 Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVL 236 ++ YR F Q NA +N M+ AL+ K + + +L+L+CG GNF+L LA+ V+ Sbjct: 273 QLAYR--PGDFIQVNAGVNEAMVAQALEWLKPTADERVLDLFCGLGNFALPLAKAAREVV 330 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 A E + V A N A+N++ N + + + +Q + + Sbjct: 331 AVEGVQTMVDRAAANAASNNLHNTKFFQA---DLSQPLTDAEWIGN---------GFSAV 378 Query: 297 FVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKN-LETLSQTHKVERLALFDQFPYT 354 +DPPR G K+ R++Y+SCNP TL ++ +E + Q ++++R + D FP T Sbjct: 379 LLDPPRDGAFEVVRKLAALGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQT 438 Query: 355 HHMECGVLLTA 365 H+E L A Sbjct: 439 AHVEAMALFEA 449 >UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=Lactobacillales RepID=B1MWX6_LEUCK Length = 498 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 23/205 (11%) Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPN-AAMNIQMLEW--ALDVTKGSKGDLLELYCGN 221 +DYI+E V GK ++ +F Q N M + E AL++T K L++ Y G Sbjct: 309 KDYIEET--VMGK--TFQLSPRAFMQLNHTQMTVVYNEALSALNLTHADK--LVDAYAGV 362 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G L+LA V EI +V A N NHI N + AE F Sbjct: 363 GTIGLSLADKAGEVRGMEIIPEAVDDANINAKINHISNAKYEVGTAEVL---------FP 413 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEK-MVQAYP-RILYISCNPETLCKNLETLSQT 339 + Q + + + + VDPPR+GLD+ + +++ P + +YISCN TL ++L L++ Sbjct: 414 KWQA---EGWLADALVVDPPRTGLDTALRREIIRTKPEKFVYISCNASTLARDLVDLTKA 470 Query: 340 HKVERLALFDQFPYTHHMECGVLLT 364 +KV+ + D FP T E V LT Sbjct: 471 YKVDYIQSIDMFPQTARWEGVVKLT 495 >UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=16 Tax=Fusobacterium RepID=Y1713_FUSNN Length = 464 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 93/388 (23%), Positives = 175/388 (45%), Gaps = 54/388 (13%) Query: 10 QYEAQL------AEKVVRLQSMMAPFSDL-VPEVFRSP-VSHYRMRA--EFRIWHDGDDL 59 +YE+QL E+V+R +A SD+ + +V S + +YR + F ++ + + Sbjct: 99 KYESQLKYKRFMVEEVIR---KIAGLSDIEISDVLASEDIYNYRNKIIEPFSVY--ANKI 153 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVL-----RHK--LFQIDYLT 112 F +++ VD S+L N+++ + + N + HK L I T Sbjct: 154 ITGFFKRKSHEVFEVDENILNSKLGNKIIKELKEILNKNKISVYDENTHKGILRNIMIRT 213 Query: 113 TLSNQAVVSLLYHK-KLDDEWRQEAEALRDALR-AQNLNVHLIGRATKTKIELDQDYIDE 170 +N+A+V L+ + K+ + ++ LR+ + +++ + L + T T I ++ Sbjct: 214 NSNNEAMVVLIINSNKITENIKKLLFKLRENIEEIKSIYISLNSKKTNTVIG------EK 267 Query: 171 RLPVAGKEMIYRQVE--------NSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGN 221 + + G++ I + SF Q N ++ + A+ +++ Y G Sbjct: 268 NILIYGEKSIKENINRIEFHISPTSFFQINVKQAKRLYDIAISFFDNIDNKYIVDAYSGT 327 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G + +A+ +V A EI K + + N I+N++ I A E+ V+ N Sbjct: 328 GTIGMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEK-----ELVKLVN 382 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSE-TEKMVQA-YPRILYISCNPETLCKNLETLSQT 339 Q ID TI DPPR GL++ +K+ + ++YISCNP T ++++ S+ Sbjct: 383 NNQKID-------TIIFDPPRKGLETSIIDKVAELNLKEVVYISCNPSTFARDVKLFSEK 435 Query: 340 HKV-ERLALFDQFPYTHHMECGVLLTAK 366 V ++L D FP T H+EC L+ K Sbjct: 436 GYVLKKLQAVDMFPQTSHIECVGLIERK 463 >UniRef50_Q5UQK3 Putative RNA methyltransferase R405 n=1 Tax=Acanthamoeba polyphaga mimivirus RepID=YR405_MIMIV Length = 389 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 99/214 (46%), Gaps = 23/214 (10%) Query: 160 KIELDQDYIDERLPVAGKEMIYRQVENSFTQPNA----AMNIQMLEWALDVTKGSKGDLL 215 KI +YI E+L + I++ + SF Q N + ++LE + K + D+L Sbjct: 181 KIVKGHNYIHEKL----DDYIFKITDESFFQVNTLATEVLYNKVLELTMKYIKPTGQDIL 236 Query: 216 -ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAM 274 +L CG G + L++ F +V +I + S+ A +N N+I N++ I E + Sbjct: 237 FDLCCGTGTIGIYLSKIFTKVFGIDIKQSSIIDANHNKLLNNIPNIEFICNPIENVLE-- 294 Query: 275 NGVREFNRLQGIDLKSYQCETIF--VDPPRSGLDSETEKMVQAYPR---ILYISCNPETL 329 +L L+ T F VDPPR+G+ + + P ++Y+SCN T Sbjct: 295 -------KLISECLEKNPDSTFFAVVDPPRTGMHGGVQNTINNCPNLEYLIYVSCNVVTF 347 Query: 330 CKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 +++E L + + D FP+T H E V+L Sbjct: 348 KRDMEILGKQFEAIETICLDLFPHTPHCELIVVL 381 >UniRef50_D1J8P5 Putative uncharacterized protein n=1 Tax=Mycoplasma hominis ATCC 23114 RepID=D1J8P5_MYCHP Length = 443 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 85/153 (55%), Gaps = 15/153 (9%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDN--VQIIRMAAEEFT 271 ++++Y G G+ +++ N ++ EI K + A+ NI N I+ V II +A++F Sbjct: 301 IIDVYSGVGSIGISVCGNDSQLELIEINKSACECAKININQNLINPKLVDIINSSAQDF- 359 Query: 272 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCK 331 FN+ + + ++ + DPPR+GL ++ M++ ++Y+SCNP T+ + Sbjct: 360 --------FNKKEA---EYFEKSIVIFDPPRTGLTNKEINMLEKCNSVIYMSCNPHTMIR 408 Query: 332 NLETLSQT-HKVERLALFDQFPYTHHMECGVLL 363 +L+ + +++ERL +D FP T+H+E LL Sbjct: 409 DLKYFEEKGYRIERLIPYDMFPQTYHIEMLSLL 441 >UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=Desulfovibrio RepID=C4XJA3_DESMR Length = 450 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 91/381 (23%), Positives = 162/381 (42%), Gaps = 62/381 (16%) Query: 14 QLAEKVVRLQSMM-APFSDLV--PEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKS 70 Q+AE + RL + P +D V PEV+ YR + EF L+ + +++ + Sbjct: 99 QVAETLARLGGLPDVPVADTVASPEVY-----GYRNKMEFAF---AGRLHLGLRERRNPA 150 Query: 71 RI-RVDSFPA----ASELINQLM-----TAMIA-------GVRNNPVLR---HKLFQIDY 110 R+ +D+ P A E++N + T + A GV + VLR H ++ + Sbjct: 151 RVLDIDTCPLMAPWAGEVVNAVRELCRETGLAAYDPRTGKGVWRHLVLRDSRHDGSRLAH 210 Query: 111 LTTLSNQAVVSLLY--HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYI 168 + T ++A ++ K L + + + RA H + I L + ++ Sbjct: 211 IITGPSRAAGDAVHTLGKTLLARFPELTGFVHSVRRAPTPVAH----GERQSIVLGRGHL 266 Query: 169 DERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWAL-DVTKGSKGDLLELYCGNGNFSLA 227 E++ + R + ++F Q N + E + + G L+LYCG+G +L Sbjct: 267 TEKM----GQATLRVLPDAFAQTNTGAAQSLYEIVTREASSDPAGTALDLYCGSGGLALN 322 Query: 228 LARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 287 LA F V +I S+ +A+ A+ + ++A N V E Sbjct: 323 LAPAFAEVRGLDIDPRSIESAK----------------ASAKLSEAHNCVFEAADAADAL 366 Query: 288 LKSYQ--CETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTHKVE 343 + +DPPR+G E + A R++Y+SCNP TL ++L+ L++ + V Sbjct: 367 DDLAGDPPTVVVLDPPRAGAAPEVIAAILRTAPGRVVYVSCNPATLARDLKRLAEAYDVT 426 Query: 344 RLALFDQFPYTHHMECGVLLT 364 + D FP+T H+E LT Sbjct: 427 SVTPVDLFPHTAHIEAVASLT 447 >UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBR7_9FIRM Length = 458 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 16/182 (8%) Query: 186 NSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPS 244 SF Q N+ + A+++ K +L+ YCG G+ SL A+ V+ E+ S Sbjct: 284 KSFYQINSVQTEVLYGKAMELANLTGKERVLDAYCGIGSISLVAAKAAKEVVGVEVNPVS 343 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 V A N NH+ N + A F + RE ++Y + +F+DPPR+G Sbjct: 344 VTNAIENARMNHLRNAWFVEADAGLFME--QAAREG--------QAY--DVVFMDPPRAG 391 Query: 305 LDSETEK-MVQAYP-RILYISCNPETLCKNLETLS-QTHKVERLALFDQFPYTHHMECGV 361 D K + + P RI+YISCNP T ++L L+ + ++V + D FP T H+E V Sbjct: 392 ADERFLKSLCRLNPDRIVYISCNPSTQARDLRHLTHEGYQVRTIVPVDLFPMTSHVETIV 451 Query: 362 LL 363 LL Sbjct: 452 LL 453 >UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1727 n=19 Tax=Bacillales RepID=Y1727_LISMF Length = 459 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 31/215 (14%) Query: 167 YIDERLPVAGKEMIYRQV--------ENSFTQPNAAMN---IQMLEWALDVTKGSKGDLL 215 + DE +AGKE I ++ +F Q N Q +E AL +T GS+ L+ Sbjct: 259 FGDETFLLAGKESIEEKLMELEFDLSARAFFQLNPFQTERLYQEVEKALVLT-GSE-TLV 316 Query: 216 ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQI-IRMAAEEFTQAM 274 + YCG G A A V +I S+ A+ N N I+NV + A + + + Sbjct: 317 DAYCGVGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWV 376 Query: 275 NGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKM---VQAYPRILYISCNPETLCK 331 N + ++ + + VDPPRSG D K V+A +++Y+SCNP TL + Sbjct: 377 N-------------EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAK-QLVYVSCNPSTLAR 422 Query: 332 NLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 +L L++ +++ + D FP T H+E VLL K Sbjct: 423 DLALLAKKYRIRYMQPVDMFPQTAHVETVVLLQLK 457 >UniRef50_D2NR03 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NR03_9MICC Length = 409 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 102/227 (44%), Gaps = 31/227 (13%) Query: 148 LNVHLIGRATKTKIELDQDYI-DER--LPVAGKEMIYRQVENSFTQPNA----AMNIQML 200 L+V+L+ R ++E D++ I ER LP+ ++ SF Q N AM Q Sbjct: 200 LSVNLL-REPVARVEGDEEIILSERQTLPMQVNDLTLHLRPQSFFQTNTKVAEAMYAQGR 258 Query: 201 EWALDVTKGSKGDLLELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAANHID 258 EW +V S L +LYCG G F+L A D V EI+ +VA+AQ +A ++ Sbjct: 259 EWVREVAPRS---LWDLYCGVGGFALHAASVMDGGSVTGIEISAEAVASAQRTVAEYGLE 315 Query: 259 NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP- 317 V A EF + V + + V+PPR G+ ++ Sbjct: 316 GVDFSAQDAPEFAVSSGTVPQM---------------LVVNPPRRGIGESLCAWIEGSGI 360 Query: 318 -RILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 R++Y SCN TL K+LE + V+ L D FP+T H E LL Sbjct: 361 DRVVYSSCNAVTLAKDLERMPSYAPVQGRVL-DMFPHTDHYEVMTLL 406 >UniRef50_B7GDX8 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GDX8_PHATR Length = 378 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 25/213 (11%) Query: 164 DQDYID----ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD------ 213 D DY++ + L + + + + +F Q N + M+E L G + Sbjct: 170 DDDYVETNHQQPLTTTVRGLNFTYLAGNFFQNNYYVLPLMVEHVLARAVGDDHEQPTMTH 229 Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 L + YCG+G F++A A +F V+ EI +V AQ N N ID+ Q + ++E Sbjct: 230 LADCYCGSGLFAIAAAPSFATVVGIEINDKAVREAQANAERNGIDHCQFLAASSENI--- 286 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCK 331 +R+F R + +DPPR G E + + RI+Y+SC+P T + Sbjct: 287 FAEIRDFPR---------DTTVVVLDPPRKGCSVEFLSQLYDFAPRRIVYMSCDPTTQAR 337 Query: 332 NLETL-SQTHKVERLALFDQFPYTHHMECGVLL 363 + + + + +++ + FD FP T H+EC ++L Sbjct: 338 DAQGIVAAGYRITSVQPFDLFPQTRHIECLMVL 370 >UniRef50_C8X3P2 (Uracil-5)-methyltransferase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3P2_DESRD Length = 391 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 26/199 (13%) Query: 172 LPVAGKEMIYRQVENSFTQPNAAMNIQMLE----WALDVTKGSKGDLLELYCGNGNFSLA 227 LP+ G + + +F Q N ++N ++E W GS+ + +LY G GNF L Sbjct: 204 LPLPGG-LAVDVLPQTFFQANQSLNPTLVEHIRSW---CPAGSR--VADLYAGAGNFGLP 257 Query: 228 LARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 287 LA+ + V A E P++ AA+ A + +D+ Q R A +A + EF Sbjct: 258 LAQAGNPVFAVEGDGPALQAARTTAARSGLDHWQ-GRQADLRHERAWKPILEF------- 309 Query: 288 LKSYQCETIFVDPPRSGLDSETEKM--VQAYPRILYISCNPETLCKNLET-LSQTHKVER 344 Q + + DPPRSG + + + RI++ISC+ +++ + L+Q ++ Sbjct: 310 ----QPDVVVADPPRSGSGPVCRHLLHIPSLERIIWISCDLTNSARDVRSFLTQGWQLTS 365 Query: 345 LALFDQFPYTHHMECGVLL 363 LALFD FP T HME GV + Sbjct: 366 LALFDMFPQTWHME-GVFI 383 >UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C5ELW2_9FIRM Length = 475 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 15/184 (8%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF Q N ++ AL+ S + + +LYCG G SL LA+ +V EI ++ Sbjct: 303 SFYQVNPVQTEKLYGTALEYADLSGNETVWDLYCGIGTISLFLAQKAKKVYGVEIIPQAI 362 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A+ N A N +DNV+ AEE E N++ + I VDPPR G Sbjct: 363 EDARRNAALNGMDNVEFFVGKAEEVLPEQ---YEKNQIHA--------DVIVVDPPRKGC 411 Query: 306 DSET-EKMVQAYP-RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVL 362 D+ + +++ P +++Y+SC+ TL ++L L+ + V ++ D FP T H EC V Sbjct: 412 DTVCLDTILKMRPEKVVYVSCDSATLARDLRYLADGGYVVGKVRGCDMFPGTVHTECIVE 471 Query: 363 LTAK 366 L K Sbjct: 472 LCRK 475 >UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteria RepID=B1C3C0_9FIRM Length = 449 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 18/183 (9%) Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDRVLATE 239 Y+ SF Q N ++ + A++ K S D+ L+ YCG G +L+LA+ +V E Sbjct: 272 YKISLKSFYQVNPIQVEKLYQKAIEFAKLSNDDVVLDAYCGIGTIALSLAKYVKKVYGVE 331 Query: 240 IAKPSVAAAQYNIAANHIDNVQI-IRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 I ++ A+ N N I+NV+ A + + +N + + +FV Sbjct: 332 IVDTAINDARNNAKLNKIENVEFKCDDAGKYMIELVNN-------------NIHLDVVFV 378 Query: 299 DPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTH 355 DPPR G E + ++QA P +I+YISC+ T ++++ L + ++V+ D FP+T Sbjct: 379 DPPRKGCSKEFLDYLIQAKPSKIIYISCDVATQARDIKYLQEFNYQVDMCQPVDMFPHTT 438 Query: 356 HME 358 H+E Sbjct: 439 HIE 441 >UniRef50_B5RIS0 FI05218p (Fragment) n=8 Tax=melanogaster subgroup RepID=B5RIS0_DROME Length = 640 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 97/194 (50%), Gaps = 25/194 (12%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 +F Q N + + A+D+ +K +L++ CG G +LA A++ +V+ EI ++ Sbjct: 416 AFFQINTEGANVLYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAI 475 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE--FNRLQG--IDLKSYQCETIFVDPP 301 A++N AN I N + A++F ++M VRE +++ G +DL VDPP Sbjct: 476 KDAEFNAEANGIKNAKFFTGNADDFIKSM--VREALYDQEPGKPLDL------IAVVDPP 527 Query: 302 RSGLDSETEKMVQ---AYPRILYISCNPETLCKNLETL----SQTHKVERL-----ALFD 349 R+GL + ++ A R++Y+SCNP + +N L S+ +K E D Sbjct: 528 RAGLHHRSIAAIRSADAINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVD 587 Query: 350 QFPYTHHMECGVLL 363 FP+T H E +L Sbjct: 588 MFPHTMHTELVILF 601 >UniRef50_B7PPI6 tRNA uracil-5-methyltransferase, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7PPI6_IXOSC Length = 494 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 25/194 (12%) Query: 177 KEMIYRQVENSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARNFDRV 235 + + +R ++F Q N +LE A D+ G + LL++ CG G L +A RV Sbjct: 300 RGLSFRVGPDAFFQVNTPAAEVLLEVAEDLAALGPRTTLLDVCCGTGTIGLCMAAKVARV 359 Query: 236 LATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE-FTQAMNGVREFNRLQGIDLKSYQCE 294 E+ K +V A+ N AN I N + AE+ M+ +R+ + + Sbjct: 360 YGVEVCKRAVENAKRNAEANGIGNASFVLGRAEDTMHDVMHTLRDSEDMVAV-------- 411 Query: 295 TIFVDPPRSGLDSETEKMVQA---YPRILYISCNPETLCKNLETLS---------QTHKV 342 VDPPR GL ++ + ++A R++YISCNPE +N L+ Q V Sbjct: 412 ---VDPPRQGLHNKVLRALRATASIKRLVYISCNPEGALQNFLDLARPASNNYRGQPFVV 468 Query: 343 ERLALFDQFPYTHH 356 + A D FP+T H Sbjct: 469 VKAAPVDMFPHTPH 482 >UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GDX8_9FIRM Length = 394 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 34/211 (16%) Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT--KGSKGDLLELYCGNGNF 224 YI++RL A +R +F Q N+ ++ A+D+ KG K +L+ YCG G Sbjct: 199 YIEDRLMGAR----FRISPGAFYQVNSQQTKKLYRLAVDMADLKG-KERVLDTYCGTGTI 253 Query: 225 SLALARNFDR-------VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 277 +A A + R ++ E +V A+ N N + + + A F A Sbjct: 254 GIAAAVDLARRTKEPMELIGVECNPAAVRDARINARVNGLRQARFVVADAGAFMLAEA-- 311 Query: 278 REFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPR-----ILYISCNPETLCKN 332 E R C+ +F+DPPR+G TE+ + A R I+YISC+P+T ++ Sbjct: 312 -EAGR---------SCDLVFMDPPRAG---STEEFLLALRRLVPEKIVYISCDPKTQARD 358 Query: 333 LETLSQTHKVERLALFDQFPYTHHMECGVLL 363 L+ L + + R+A D FP+T +E VLL Sbjct: 359 LKYLDSAYAIRRIAPVDMFPFTDGIENVVLL 389 >UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19 Tax=Proteobacteria RepID=RUMA_PSYCK Length = 513 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 26/191 (13%) Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALAR---NFD 233 ++ + + FTQ N ++N QM + A D+ G+ +L+L+ G GNFSL LAR Sbjct: 329 DLTFEFIPTDFTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGNFSLPLARLVGETG 388 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 V+ E ++ A A N N I+N + +++ T N QG D Sbjct: 389 SVVGVEGSEAMTARAADNARRNGINNTEFY---SQDLTHDCTDKPWAN--QGFD------ 437 Query: 294 ETIFVDPPRSGLDSETEKMVQAYP-----RILYISCNPETLCKNLET-LSQTHKVERLAL 347 + +DPPRSG +++Q P RI+Y+SCNP TL ++ + L Q +++ + Sbjct: 438 -ALLIDPPRSG----AWEIMQYLPKFNAERIVYVSCNPATLARDTKALLEQGYRLTHAGV 492 Query: 348 FDQFPYTHHME 358 D F +T H+E Sbjct: 493 MDMFCHTGHVE 503 >UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YG03_THEYD Length = 389 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 28/205 (13%) Query: 159 TKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELY 218 +IE Q + ERL GK+ I SF Q N ++++ L+ +++ Y Sbjct: 200 VEIETGQKFYYERL--LGKDFIISA--PSFFQVNTYQAEKLIQTVLNYITQEDKTVIDAY 255 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE--FTQAMNG 276 G G F++ LA+ ++V+A E ++ + AQ NI + DN+ + EE F +NG Sbjct: 256 AGVGTFTVFLAQKAEKVIAIEESRSAYKDAQINI--KNFDNITYLCKKTEEALFESKING 313 Query: 277 VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLE 334 + I +DPPR G E + + + +++Y+SC P TL ++L+ Sbjct: 314 -----------------DAIVIDPPRVGCMKEVLQAIAEKKIKKVIYVSCEPSTLARDLK 356 Query: 335 TLSQ-THKVERLALFDQFPYTHHME 358 L + +K++ + D FP T+H+E Sbjct: 357 YLKEMGYKLKEIQPVDMFPQTYHIE 381 >UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVD9_9CLOT Length = 460 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 15/153 (9%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 +L+LYCG G + +A +V+ E+ ++ A+ N N + N++ I + QA Sbjct: 311 VLDLYCGTGTIGMTMASKAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFI---CGDSAQA 367 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYPR-ILYISCNPETLCK 331 + +R+ + + + VDPPR G E +V+ PR I+Y+SC+P TL + Sbjct: 368 VQMLRK---------RGERPTVVVVDPPRKGCGLPVLEHIVEIAPRKIIYVSCDPATLAR 418 Query: 332 NLETLSQT-HKVERLALFDQFPYTHHMECGVLL 363 +L+ L + + ++ LA D FP T H+E LL Sbjct: 419 DLKLLVKAGYCLQTLAPVDLFPRTAHVETVALL 451 >UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU44_9GAMM Length = 440 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 26/187 (13%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 F Q N +N ++ A+ + G+ +++L+CG GNF+L +AR R L E V Sbjct: 270 GFIQVNPWINPVLVRRAMALLAPEPGEEIVDLFCGLGNFTLPMARLGARALGVEGDTRLV 329 Query: 246 AAAQYNIAAN------HIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 299 A A++N N H + + A + A GVR+ + +D Sbjct: 330 AQARFNAELNGLAARAHFIAADLTQTALADLPGAA-GVRK----------------MLID 372 Query: 300 PPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETL--SQTHKVERLALFDQFPYTHHM 357 PPRSG + + A R++Y+SCNP+TL ++ L Q ++E + + FP+T H+ Sbjct: 373 PPRSGAIEILKGIGPALRRLVYVSCNPDTLARDSAYLVQQQGFRLEAAGIVNMFPHTAHV 432 Query: 358 ECGVLLT 364 E L T Sbjct: 433 ESVALFT 439 >UniRef50_O58994 Uncharacterized RNA methyltransferase PH1259 n=8 Tax=Thermococcaceae RepID=Y1259_PYRHO Length = 412 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 96/203 (47%), Gaps = 31/203 (15%) Query: 174 VAGKEMIYRQVE--------NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFS 225 V G E+I +VE + F Q N+ +L+ +GSK +L+LY G G S Sbjct: 231 VLGNEVIREKVEGITYLIHPSVFFQTNSYALPLLLKSVEKFCEGSK--VLDLYSGIGTLS 288 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 L LA+ V E+ SV A+ + N I N I+ AE+ Sbjct: 289 LYLAKRGFEVTGVEVNGTSVEMAKRSAEINSI-NATFIQGKAED---------------- 331 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMVQAYPR-ILYISCNPETLCKNLET-LSQTHKVE 343 +L+ Y ET+ VDPPR GL + ++V+ P ++Y+SCNP + LS+ +KV+ Sbjct: 332 AELEGY--ETLIVDPPRKGLKEFSRRIVKKGPNTLIYVSCNPLRFILDYRNYLSEAYKVD 389 Query: 344 RLALFDQFPYTHHMECGVLLTAK 366 L D FP+T H+E + L + Sbjct: 390 DALLIDMFPHTPHIEAVIKLVRR 412 >UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzyme n=4 Tax=Leuconostocaceae RepID=Q03Z05_LEUMM Length = 463 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 27/184 (14%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDL------LELYCGNGNFSLALARNFDRVLATE 239 NSF Q +N Q E D+ K DL ++ Y G G +++A +VL E Sbjct: 290 NSFYQ----VNPQTTEVLYDLA-AQKADLKPTDTVIDAYSGIGTIGISVASRVKKVLGVE 344 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 299 + +VA AQ N+ N+I N + I A +F + Q LK + +FVD Sbjct: 345 VVPGAVADAQLNLQVNNISNAEYILADAP---------VQFKKWQEQGLKP---DVVFVD 392 Query: 300 PPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKN-LETLSQTHKVERLAL-FDQFPYTH 355 PPR GL + P +I+YISCNP TL ++ +E + + ++ L DQFP T Sbjct: 393 PPRRGLTTSLINGTTDMSPEKIVYISCNPVTLSRDAVEIIENGYHIDGSVLPVDQFPQTS 452 Query: 356 HMEC 359 H+E Sbjct: 453 HVES 456 >UniRef50_C8QZ82 RNA methyltransferase, TrmA family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ82_9DELT Length = 450 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 101/201 (50%), Gaps = 21/201 (10%) Query: 171 RLPV--AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLA 227 +LPV AG+ + + F+Q N N Q+L +++ + + +++ +L+CG GNFSL Sbjct: 256 KLPVTPAGRTLELQFEPWGFSQVNEEQNRQLLTLLIELLQPAGHEIVADLHCGMGNFSLP 315 Query: 228 LARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN--GVREFNRLQG 285 LA V ++ ++ A+ N AN ++N + A + A+ G+R Sbjct: 316 LALLVGEVHGVDLQAAAIRGAKRNAEANRLNNCHFRQAEAHQGLAALQAAGIRP------ 369 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMVQAYP-RILYISCNPETLCKNLET-LSQTHKVE 343 + + +DPPR+G + P +++ ISC+P T+ ++L L+ ++VE Sbjct: 370 --------DVLLLDPPRAGCRELVATLEAPLPGKVVMISCDPATMTRDLAALLALNYQVE 421 Query: 344 RLALFDQFPYTHHMECGVLLT 364 + L D FP THH+E LL+ Sbjct: 422 TMRLVDMFPQTHHLETITLLS 442 >UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWS7_9BACL Length = 451 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 19/242 (7%) Query: 127 KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVEN 186 K+ +E ++E L N HL+ T++ DYI E++ + Y Sbjct: 227 KVVNELKRERIVKSIILNITNDKDHLV-MGTESVTLYGSDYIVEKIG----DTKYELSAK 281 Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF Q N ++ + ++ + D+ L+ YCG G ++RN V +I ++ Sbjct: 282 SFFQLNPPATKKLYDKVVEFAALKETDVVLDAYCGVGTIGQYVSRNCKEVYGVDIIPAAI 341 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A N+ N++ N + A + + +GI+ + VDPPR GL Sbjct: 342 EDANDNVKLNNLKNCTYVAGDANKIVPRW-------KKKGINF-----DVAIVDPPRVGL 389 Query: 306 DSETEKMVQA-YPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLT 364 + ++ +I+Y+SCNP TL ++L+ L++ +K+ R+ D FP T +E V L Sbjct: 390 GPLAKNLLAVEAKKIVYVSCNPSTLARDLKVLTRKYKIRRIQPVDMFPGTAAVEAVVELI 449 Query: 365 AK 366 K Sbjct: 450 RK 451 >UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusobacteriaceae RepID=C7NBA6_LEPBD Length = 474 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 38/222 (17%) Query: 149 NVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD--- 205 NVHL G Y++E + + + ++ NSF Q N +++ + A++ Sbjct: 269 NVHLFG----------SQYLEEEM----EGLKFKIYPNSFFQINKKQALKLYDAAINFLN 314 Query: 206 -----VTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNV 260 + K + +++ + G G ++ L++N +V+ E + S AA+ N I NV Sbjct: 315 EENKNIDKIYEKTVIDAFSGTGTIAMMLSKNIKKVIGIESIESSTLAAKLTSYENSIQNV 374 Query: 261 QIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPR 318 + + E +E ++ LK I DPPR G++ K V + Sbjct: 375 EFVNGKVE---------KELPKI----LKREDVGAIVFDPPRRGIEESALKSVVKNKIEK 421 Query: 319 ILYISCNPETLCKNLETLSQTHKVER-LALFDQFPYTHHMEC 359 I+YISCNP T ++++ L++ V R +A D FP T H+E Sbjct: 422 IVYISCNPATFARDVKILAENGYVLRKVAPVDMFPQTGHIEV 463 >UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8N4_9FIRM Length = 457 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 28/217 (12%) Query: 157 TKTKIELDQDYIDERLPVAGKEMIYRQVEN--------SFTQPNAAMNIQMLEWALDVTK 208 T+TK E+ + D R + G+E ++ Q+E+ SF Q N ++ + D Sbjct: 231 TETKREV---FGDMRF-IWGEEKMHLQLEDIQLSLLPRSFFQLNTKQSVNLYNVVKDWMP 286 Query: 209 GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE 268 SK +E Y G G SL + ++ E + +V A N NH DNV I E Sbjct: 287 RSK-TTVEAYSGIGAISLFVKDKAQEIIGVESIQDAVDNANENAMLNHADNVSFI---CE 342 Query: 269 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNP 326 + A+ + ++ +T+ VDPPRSGLD ++ + ++Y+SCNP Sbjct: 343 DAGSALAHL----------VQEKDVDTLIVDPPRSGLDDTMKETILKSKIKTMIYVSCNP 392 Query: 327 ETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 TL K+L L + +++ ++ D F T H+E LL Sbjct: 393 ATLAKDLGVLKKEYRIVKIQPVDMFSQTPHVESVTLL 429 >UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5A4_9BACT Length = 508 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 18/202 (8%) Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGN 223 +D+I E + ++ ++ SF Q N + A + + + +L+ +LY G G Sbjct: 319 KDHITETM----GDLKFKVAAKSFYQTNTNQAYHLYSVAREFAQLTGKELVYDLYTGTGT 374 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 + +AR V+ E + ++ A+ N AAN I N Q ++ EF Sbjct: 375 IANFVAREAREVIGIEYVEDAIKDAKVNSAANDIHNTQFYAGDMKDIL-----TEEFIAE 429 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTHK 341 G + + I DPPR+G+ + + + A RI+Y+SCNP T ++L+ L + +K Sbjct: 430 HG------RPDVIITDPPRAGMHPDVVRTILGAAPQRIVYVSCNPATQARDLQMLDEQYK 483 Query: 342 VERLALFDQFPYTHHMECGVLL 363 V + D FP+T H+E VLL Sbjct: 484 VMAVQPVDMFPHTPHVENVVLL 505 >UniRef50_B4RXM8 RNA methyltransferase, TrmA family protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RXM8_ALTMD Length = 482 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 93/373 (24%), Positives = 167/373 (44%), Gaps = 48/373 (12%) Query: 12 EAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGDDLYHIIFDQQ 67 +A LA + L+ MM + V+++P+ YR +A I D + F + Sbjct: 138 DAALAYRDNALKIMMERQLSIGSGVWQAPLVGPRPQYRRKARLAIDARNPDNIKLGFREA 197 Query: 68 TKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLS--NQAVVSLLY 124 +++ +D+ P L+N L TA I +RN I +++ ++ N+A V + + Sbjct: 198 NSNKVVNLDTCPI---LVNPLSTA-IGPLRNALEGYDSARHIGHISLIAGDNRAQVVIKH 253 Query: 125 HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQV 184 K L+D + +A AL L+V L + + + + E + +I V Sbjct: 254 TKALEDALIETVDAFAKAL---GLDVVLENKQGRLR------SVGE-----AQGLIMHTV 299 Query: 185 E--------NSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRV 235 + N F Q N +N +M+ AL + + + + G GNF+L +A+ V Sbjct: 300 DGCSISPSANDFIQINKVVNEKMINQALVWLDPRPNERIADWFSGLGNFTLPIAKKGALV 359 Query: 236 LATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCET 295 A E V A+ N I+NV+ + + + N E + QG D Sbjct: 360 QAIEGVAEMVLRAKDNAQQQGIENVEWLHL---DLANKAN--VEASLQQGFD-------K 407 Query: 296 IFVDPPRSGLDSETEKMVQAYPR-ILYISCNPETLCKNLETL-SQTHKVERLALFDQFPY 353 + +DP R G + +V+A P+ I+Y+SCNP T ++ + L + +++E+ + + FP+ Sbjct: 408 VLLDPSREGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLINGGYEMEKAGVAEMFPF 467 Query: 354 THHMECGVLLTAK 366 THHME L T + Sbjct: 468 THHMEMMALFTQR 480 >UniRef50_A5V044 (Uracil-5)-methyltransferase n=5 Tax=Chloroflexaceae RepID=A5V044_ROSS1 Length = 407 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 94/179 (52%), Gaps = 21/179 (11%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRVLATEIA 241 N+F Q N + + +LE D G +G+ L +LY G G +L +A D+++ E Sbjct: 235 NTFFQNNVWLLMPLLEAVRDAVAG-EGERARALADLYGGVGTIALFVADLADQIVCVESV 293 Query: 242 KPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPP 301 + SV A+ NIA +++ I++ + +RE R +G + + DPP Sbjct: 294 EESVRLARENIARAGFEHIAIVK------ADVADALRE--RTRG------AFDIVIADPP 339 Query: 302 RSGLDSET-EKMVQAYP-RILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHME 358 R+GL + ++++ P RI+YISCNP T ++ L++ +++ L +D FP+T H+E Sbjct: 340 RTGLGPDVCRELLRLRPQRIVYISCNPLTQRDDVRMLTEAYRLTSLRGYDMFPHTPHLE 398 >UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780 n=3 Tax=Thermococcaceae RepID=Y1078_PYRAB Length = 405 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 100/193 (51%), Gaps = 33/193 (17%) Query: 176 GKEMIYRQVE--------NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLA 227 GKE I +++ NSF Q N+ + ++ ++ +G K +L++Y G G F + Sbjct: 230 GKEFIRERLDDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEK--ILDMYSGVGTFGIY 287 Query: 228 LARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 287 LA+ V + + ++ A+ N+ N++D EF A + RE + ++G D Sbjct: 288 LAKRGFNVKGFDSNEFAIEMARRNVEINNVD---------AEFEVASD--REVS-VKGFD 335 Query: 288 LKSYQCETIFVDPPRSGLDSE-TEKMVQAYPR-ILYISCNPETLCKNLETLSQTHKVERL 345 T+ VDPPR+GL +++ + P I+Y+SCNPET ++++ L ++++ + Sbjct: 336 -------TVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRIDEI 386 Query: 346 ALFDQFPYTHHME 358 D FP+T H+E Sbjct: 387 VALDMFPHTPHVE 399 >UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desulfuromonadales RepID=A1ARE6_PELPD Length = 493 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 18/164 (10%) Query: 198 QMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI 257 ++ EWA + + +L+LYCG G +L LAR RV+ E+ + +V A+ N N I Sbjct: 329 RVAEWARLTGRET---VLDLYCGIGGIALTLARRARRVIGVEVVEAAVEDARRNARMNGI 385 Query: 258 DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY- 316 N A + + + + E +G+D+ + ++PPR G D + + V A Sbjct: 386 SNCV---FQAGDVAEQLEELAEDG--EGVDV-------VVLNPPRKGCDEQVLRQVAALG 433 Query: 317 PR-ILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHME 358 PR +LY+SC+P+TL ++L L S + + D FP+T H+E Sbjct: 434 PRTVLYVSCSPQTLARDLNLLKSLGYVCVEVQPVDMFPHTMHVE 477 >UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veillonellaceae RepID=D1BLZ0_VEIPT Length = 457 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 22/195 (11%) Query: 177 KEMIYRQVENSFTQPNAAMNIQMLEWALDVT--KGSKGDLLELYCGNGNFSLALARNFDR 234 K++ + +SF Q N + + AL KG++ +++ YCG G SL LA Sbjct: 272 KDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTE-IVIDAYCGTGTISLFLAYKAKH 330 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQ-IIRMAAEEFTQAMN-GVREFNRLQGIDLKSYQ 292 V+ EI +P++ A+ N N DN + I+ AA E + GVR Sbjct: 331 VIGIEIVEPAITNARENARRNGYDNTEFIVADAAVEIPKLYKAGVRP------------- 377 Query: 293 CETIFVDPPRSGLDSE--TEKMVQAYPRILYISCNPETLCKNLETLSQ-THKVERLALFD 349 + I DP R+G E T RI+Y+SCNP T+ +++E L+ ++++ + D Sbjct: 378 -DVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTHYGYELKEVQPVD 436 Query: 350 QFPYTHHMECGVLLT 364 FP T H+E LLT Sbjct: 437 MFPMTAHVEAVALLT 451 >UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=64 Tax=Staphylococcus RepID=Y1582_STAES Length = 456 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 94/384 (24%), Positives = 166/384 (43%), Gaps = 48/384 (12%) Query: 11 YEAQL---AEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHII---F 64 Y AQL E+VV L PF + V + V+ +R R + +I + +I + Sbjct: 90 YRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVNPWRYRNKSQIPVGQSNSNQVIMGFY 149 Query: 65 DQQTKSRIRVDS-----------FPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTT 113 Q++ I +DS +N+L ++ ++RH + + Y T Sbjct: 150 RQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLVVRTGYHTD 209 Query: 114 ------LSNQAVV--SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ 165 ++N A S L KL E+ +++ + + NV ++GR + T + Sbjct: 210 EMMVIFVTNGATFKQSELLVNKLKKEF-PNITSIKQNINNSHSNV-IMGRQSMTL--YGK 265 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNGNF 224 D I+++L E+ Y + SF Q N++ ++ + AL+ + K +L+ YCG G Sbjct: 266 DKIEDQL----SEVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYCGIGTI 321 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 L +A V E+ ++ A+ N N + N AE+ + Q Sbjct: 322 GLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTW-------KSQ 374 Query: 285 GIDLKSYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNLETLSQTHKV 342 GI + + + VDPPR G D +++ P RI+YISCNP T ++ + L++ +++ Sbjct: 375 GI-----KPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILAEQYEL 429 Query: 343 ERLALFDQFPYTHHMECGVLLTAK 366 + D FP T H+E L K Sbjct: 430 VEITPVDMFPQTTHIETVALFVRK 453 >UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHU9_9CLOT Length = 467 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 19/156 (12%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 L++LYCG G L++A RV+ EI +V A+ + N + N + + A+E ++ Sbjct: 319 LVDLYCGAGTIGLSMAGKAKRVIGVEIIPVAVEDARRSAQRNGVRNAEFLCADAKEAARS 378 Query: 274 M--NGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYP-RILYISCNPETL 329 + G+R + + VDPPR G D+ + + + P RI+ ISCNP T Sbjct: 379 LAQQGLRP--------------DVVIVDPPRKGCDASVLQSICEMAPQRIVMISCNPATA 424 Query: 330 CKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLT 364 ++ L Q ++VE +A D F T H+EC + L Sbjct: 425 ARDCGLLQQQGYRVEEVAAADLFSRTLHVECVISLV 460 >UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NR99_9BACE Length = 454 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 95/385 (24%), Positives = 166/385 (43%), Gaps = 56/385 (14%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSH-------YRMRAEFRIWHDGDDLYHII 63 Y +L K +R++ + + L V PV H YR + +F + + Sbjct: 92 YAEELEAKRIRVEDCLQRIAGLDVTV---PVIHGAKDTRRYRNKVQFPVQPGPEGPRVGF 148 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDYLT 112 + Q+T I V+ E +L A ++ ++ ++RH +++ Sbjct: 149 YRQRTHQVISVEDCLLQPETAARLRAAAVSWMQWHNISAYDEKTGRGLVRHVYVRVNR-- 206 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRD---ALRAQNLNVH------LIGRATKTKIEL 163 + Q++V LL + K + +ALR+ L L V+ ++G + +T Sbjct: 207 --AGQSLVCLLVNGKSVPQEDALVQALRNVEPGLVGVVLGVNEKKNNVILGDSYRTL--W 262 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNG 222 QD++++ L +R SF Q NA + ALD + +L+LYCG G Sbjct: 263 GQDWLEDTL----CGFTFRLSVPSFYQVNANQAEVLYGRALDFAGLTGRETVLDLYCGIG 318 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 SL +AR +V E+ +V A+ N N ++N + + A E +A+ Sbjct: 319 TISLVMARQAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGDAGEAARALA------- 371 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNLETLSQTH 340 + + + + VDPPR GL + + +V P R++Y+SC+P TL ++++ Sbjct: 372 -----ARGVKPDVVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLARDVKRFVSLG 426 Query: 341 KVERLA-LFDQFPYTHHMECGVLLT 364 V R A D FP T H+E VLLT Sbjct: 427 YVLRKAEAVDMFPRTAHVESVVLLT 451 >UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZT5_DESAS Length = 458 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 97/208 (46%), Gaps = 34/208 (16%) Query: 174 VAGKEMIYRQVE--------NSFTQPNAAMNIQMLEWALDVT--KGSKGDLLELYCGNGN 223 + GKE+I +++ NSF Q N I++ + AL+ KG++ +L+ YCG G Sbjct: 266 IWGKEIIVDKIKDLSFYISANSFYQINPKQTIKLYDKALEYAELKGNE-TVLDAYCGIGT 324 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE----EFTQAMNGVRE 279 ++ + N +V E +V A+ N A N ++NV+ + E EF + N V Sbjct: 325 IAMYFSANARKVTGLESLNIAVKDARENAALNRLNNVEFLCGEVEKLLPEFAERNNNV-- 382 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLS 337 + I +DPPR G + + P+I+Y+SCNP TL ++L L Sbjct: 383 --------------DIIILDPPRQGCKQVVLEAIAKMRIPKIIYVSCNPGTLARDLGLLD 428 Query: 338 Q-THKVERLALFDQFPYTHHMECGVLLT 364 + + + + D FP T H+E L+ Sbjct: 429 KLGYGIIEVQPVDMFPQTSHIEICTFLS 456 >UniRef50_Q1D5V4 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Cystobacterineae RepID=Q1D5V4_MYXXD Length = 431 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 15/176 (8%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPS 244 ++F Q +A N+ ++ A+ + D +LELY GNGNF+ LA VL E + Sbjct: 259 DAFAQAHAEANVGLVTSAVYELGARESDTVLELYSGNGNFTFPLAGTAASVLGVESSPVG 318 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 V AQ + + NV+ I+ A + + V E R + DPPR+G Sbjct: 319 VELAQRSAHEGGVTNVRFIQGDARKVCDGL--VAEQRRF----------DVCLADPPRAG 366 Query: 305 LDSETEKMVQ-AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHME 358 + M R++Y++C+P +L ++ L + +K L + D FP THH+E Sbjct: 367 APGLAKWMTALGVRRVVYVACDPASLARDAAGLVAAGYKPLALQVVDMFPQTHHVE 422 >UniRef50_A5EXR9 23S rRNA methyltransferase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXR9_DICNV Length = 424 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 104/199 (52%), Gaps = 24/199 (12%) Query: 173 PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD-VTKGSKGDLLELYCGNGNFSLALARN 231 P++G + + + F Q NA++N +++ L + K ++L+L+ G GNFSL LA Sbjct: 240 PISGVTLHF--TPDDFIQVNASVNEALIQTVLAWLAPLEKSEVLDLFSGLGNFSLPLAYK 297 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA---MNGVREFNRLQGIDL 288 RV A E + V +MAAE+ + M + F+ + + Sbjct: 298 GARVTAVEGVRAMVQRGA--------------KMAAEQQLSSRLEMQCMDLFS-VSAAQM 342 Query: 289 KSYQ-CETIFVDPPRSGLDSETEKMVQAYP-RILYISCNPETLCKNLETL-SQTHKVERL 345 KS+Q ++ +DPPR+G + + + + +P +I+Y+SCNP TL +++ L S+ +ER Sbjct: 343 KSWQSAKSWLLDPPRAGAHAVVQALPKKFPEKIVYVSCNPATLARDVAILQSKGFHLERG 402 Query: 346 ALFDQFPYTHHMECGVLLT 364 + + F ++ H+E +L+T Sbjct: 403 QVVNMFAHSAHIESVILMT 421 >UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDG7_HELMI Length = 490 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 24/186 (12%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKG-----DLLELYCGNGNFSLALARNFDRVLATEIA 241 SFTQ +N + E +TK G +++ YCG G SL LAR+ RV+ E Sbjct: 317 SFTQ----VNPRQTEILYQLTKEVCGLTGRETIIDAYCGAGTISLFLARDCARVIGIEEV 372 Query: 242 KPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPP 301 +V AQ N N I NV+ + E+ L + ++ + I +DPP Sbjct: 373 PMAVEDAQKNAEQNGITNVEFLTGKVEDL------------LPSLLERACVPDVIVLDPP 420 Query: 302 RSGLDSET-EKMVQAYP-RILYISCNPETLCKNLETLS-QTHKVERLALFDQFPYTHHME 358 R G + E + Q P RI+Y+SC+P +L ++ L+ +V+++ D FP T H+E Sbjct: 421 RRGCHARVIEAIAQTGPDRIVYVSCDPASLARDAARLTAHGWQVKQVTPVDMFPQTGHVE 480 Query: 359 CGVLLT 364 VL++ Sbjct: 481 TVVLMS 486 >UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n=84 Tax=Bacillales RepID=Y542_BACC1 Length = 459 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 103/211 (48%), Gaps = 23/211 (10%) Query: 167 YIDERLPVAGKEMIYRQVEN--------SFTQPNAAMNIQMLEWALDVTKGSKGD-LLEL 217 + D+ +AGKE+I + + +F Q N + + A + + +++ Sbjct: 261 FGDKTFKLAGKEVIQETLGDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDA 320 Query: 218 YCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 277 YCG G L LA + V ++ ++A A+ N + N + AE++ V Sbjct: 321 YCGVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKW--V 378 Query: 278 REFNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYPR-ILYISCNPETLCKNLET 335 +E ++ + I VDPPR+G D + E +++ P+ ++Y+SCNP +L ++++ Sbjct: 379 KE----------GWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQA 428 Query: 336 LSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 L ++++VE + D FP+T H+E V L K Sbjct: 429 LMKSYEVEYVQPVDMFPHTAHVENVVKLVRK 459 >UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopobium RepID=C8WAE3_ATOPD Length = 441 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 99/377 (26%), Positives = 159/377 (42%), Gaps = 48/377 (12%) Query: 11 YEAQLAEK---VVRLQSMMAPFS-DLVPEVFRSPVS-----HYRMRAEFRIWHDGDDLYH 61 YE QL EK VV + FS D V E+ + VS YR + E +G+ Sbjct: 86 YEQQLVEKRNSVVSALERIGHFSPDDVSELVKDIVSPGEPWGYRNKIELAFKRNGNKTLV 145 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKL--FQIDYLTTLSNQAV 119 ++ + +R+ P + NQ ++G + H+L +I + + + Sbjct: 146 GMYAPNGQDIVRIKDCPLLDKS-NQKAVGAVSGALSYLSGSHELDVERIGIRVSRRTKEL 204 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGK-- 177 L+ Q A L DA++A ++ V ++ TK + + ERL +G Sbjct: 205 EVALWTAPSGFPRAQVARVLSDAVKATSV-VRVM---TKGPSKARRVVGVERLSGSGSWS 260 Query: 178 EMIYRQ----VENSFTQPNAAMNIQMLEW---ALDVTKGSKGDLLELYCGNGNFSLALAR 230 E+I Q SF Q N +++E LDV + ++LYCG G F+L LA+ Sbjct: 261 ELIDGQKMQLSAPSFFQVNTKGAEKLVELVLSGLDVQPDDEA--MDLYCGAGTFTLPLAK 318 Query: 231 NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 290 V A E P+V + N+ +DNV + + REF Sbjct: 319 RAGFVSAVEAYGPAVRDLRRNLELAKLDNVDAV---------GGDAGREF--------PD 361 Query: 291 YQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQ--THKVERLA 346 + I VDPPR+GL + + + P I Y+SC+P TL ++L+ + ++K + Sbjct: 362 TDADVIIVDPPRAGLAPDVIQQLSKQPARAIAYVSCDPATLARDLKRFVEIGSYKPVSVT 421 Query: 347 LFDQFPYTHHMECGVLL 363 D FP T H+E LL Sbjct: 422 PVDLFPQTFHVENVCLL 438 >UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MLF0_9CHLO Length = 549 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 19/206 (9%) Query: 177 KEMIYRQVENSFTQPN---AAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFD 233 + +++ SF Q N A + ++ +E A +T + +L+L+CG G F L LA Sbjct: 331 RGVVFALSVKSFFQTNTKQAEILVESVEEACALTGENTETILDLFCGVGTFGLCLASKAR 390 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS--Y 291 V EI +V A+ N AN I+N + + +++M + + I Sbjct: 391 HVYGCEIVPEAVEDAKRNAVANRIENATFWQADLAQLSESMLCADSKSMSKSIVFGKDVV 450 Query: 292 QCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLS----QTHKVERL 345 + + + VDP RSG+D ++++ PRI+Y+SCNP T +++ L T + L Sbjct: 451 RPDVVIVDPARSGMDVTLVAILRSLGIPRIVYVSCNPATQARDVALLCDVSDNTQSGDLL 510 Query: 346 ALF--------DQFPYTHHMECGVLL 363 A + D FP+T H+E V+L Sbjct: 511 AKYRLISCIPVDLFPHTPHVENIVVL 536 >UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=78 Tax=root RepID=Y932_STRR6 Length = 543 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 22/185 (11%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDRVLATEIAKPSV 245 +F Q N M ++ + A+D + K D+ ++ Y G G L++A++ V E+ +V Sbjct: 280 AFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGIGTIGLSVAKHVKEVYGVELIPEAV 339 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 ++ N N+I N + AE N ++ + + GI Q I VDPPR GL Sbjct: 340 ENSKKNAQLNNISNAHYVCDTAE------NAMKNWLK-DGI-----QPTVILVDPPRKGL 387 Query: 306 DSETEKMVQAYP-----RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMEC 359 TE ++A RI YISCN T+ ++++ + ++++++ D FP THH+E Sbjct: 388 ---TESFIKASAQTGADRIAYISCNVATMARDIKLYQELGYELKKVQPVDLFPQTHHVET 444 Query: 360 GVLLT 364 LL+ Sbjct: 445 VALLS 449 >UniRef50_Q09833 Uncharacterized RNA methyltransferase C4G8.07c n=2 Tax=Schizosaccharomyces RepID=YAD7_SCHPO Length = 527 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 84/159 (52%), Gaps = 22/159 (13%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 ++ YCG+G FS+A ++ F V+ EI+ SV A+ N N++ N I AE+ + Sbjct: 379 FVDAYCGSGLFSVACSKGFLSVIGVEISADSVRYAEENAKRNNVSNATFIVGQAEKIFSS 438 Query: 274 MNGVREFNRLQGIDLKSYQCET-IFVDPPRSGLD-SETEKMVQAYP-RILYISCNPETLC 330 +++ ET + +DPPR G D S ++++ P RI+YISCN T Sbjct: 439 --------------IETPPNETAMVIDPPRKGCDQSFLNQLLEYSPYRIVYISCNVHTQA 484 Query: 331 KNLETL-----SQTHKVERLALFDQFPYTHHMECGVLLT 364 +++ L +++K++ + FD FP +HH+E + LT Sbjct: 485 RDVGFLLSQEKGRSYKIDEIRGFDLFPQSHHVESILTLT 523 >UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=20 Tax=Cyanobacteria RepID=Y1967_SYNY3 Length = 463 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 97/214 (45%), Gaps = 32/214 (14%) Query: 167 YIDERLPVAGK--------EMIYRQVENSFTQPN---AAMNIQMLEWALDVTKGSKGDLL 215 + DE + +AG+ ++ + N+F Q N A + + L+ AL++ L+ Sbjct: 264 FGDETVVIAGRGICREKFADLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAEL--LV 321 Query: 216 ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN 275 + Y G G F+L LAR + +A E+ + SV Q N N I NV + E ++ Sbjct: 322 DAYAGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTLS 381 Query: 276 GVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET--EKMVQAYPRILYISCNPETLCKNL 333 + + + +DPPR G E E + Q +I YISC P TL ++L Sbjct: 382 EIP---------------DVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDL 426 Query: 334 ETLSQT--HKVERLALFDQFPYTHHMECGVLLTA 365 + L + + + D FP T H+EC V+L A Sbjct: 427 KFLCAEGFYGITWVQGCDFFPQTAHVECAVILKA 460 >UniRef50_Q73JF6 Uncharacterized RNA methyltransferase TDE_2619 n=1 Tax=Treponema denticola RepID=Y2619_TREDE Length = 404 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 110/235 (46%), Gaps = 24/235 (10%) Query: 138 ALRDALRAQ------NLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQP 191 A+R+ L++ N +H+ K I + D + +AGK + + + F Q Sbjct: 172 AIRNLLKSNLKEYTPNSRIHIFSDGEK--IFTQDNAKDCEVRLAGKRIKFNPL--GFFQS 227 Query: 192 NAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYN 251 N M +++ + + S +L+ Y G G FSL + E K ++A AQ N Sbjct: 228 NLEMTEKLINTIFEYAEIS-SSVLDFYSGVGTFSLFAYDQAKEIHLVEHNKHALAYAQEN 286 Query: 252 IAANHIDNVQIIRMAAEE-----FTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD 306 N + I+R E F A++G + + + + LK +T+FVDPPR G+D Sbjct: 287 FLINS-SSSGIVREKKENGFPKIFYHALDG-KNWAKTKESKLK---FDTVFVDPPRIGID 341 Query: 307 SETEKMV--QAYPRILYISCNPETLCKNLET-LSQTHKVERLALFDQFPYTHHME 358 E + +I YISC+P T ++ + L +K+E+ LFD +P THH+E Sbjct: 342 KEALSWLCSSGTRQIFYISCDPVTFARDTASLLVSGYKLEKHFLFDFYPQTHHIE 396 >UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=12 Tax=Chlorobiaceae RepID=Y009_CHLTE Length = 483 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/261 (24%), Positives = 121/261 (46%), Gaps = 22/261 (8%) Query: 102 RHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI 161 RH+ ++ +T+ ++A++ L + Q+ L + +N + + + Sbjct: 232 RHEQLMVNIVTSWYDKALMQALKERLEAAMPEQQMTLLNNVTTRKNT----VATGEQEYV 287 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCG 220 Y+ ERL ++ +R NSF Q N + + + V + D + +LYCG Sbjct: 288 ISGDGYVTERL----GDLDFRISANSFFQTNTRQAETLYDQIIAVGGITPEDTVYDLYCG 343 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G +L LAR+ + + E+ + +V A+ N N + N F QA ++ F Sbjct: 344 TGTITLYLARHCKQAIGIEVVESAVKDAEMNAELNGLSNTV--------FFQA--DLKNF 393 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYP-RILYISCNPETLCKN-LETLS 337 + +Q + I DPPR+G+ + + M++ P RI+Y+SCNP+ L ++ E + Sbjct: 394 HAMQEALEPYAKPRIIVTDPPRAGMHPKALDTMLKLQPERIVYVSCNPDNLARDGKEIAA 453 Query: 338 QTHKVERLALFDQFPYTHHME 358 + +++ D FP T+H+E Sbjct: 454 RGYRMTSAQPVDMFPQTNHIE 474 >UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus RepID=A8YU02_LACH4 Length = 450 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 20/192 (10%) Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDRVL 236 ++ +R SF Q N+ ++ A+ D+ ++ Y G G L++A++ V Sbjct: 268 DLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGTIGLSVAKHVKAVR 327 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ--AMNGVREFNRLQGIDLKSYQCE 294 E+ + ++ A+ N N I N + AEE A +G++ + Sbjct: 328 GIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIMPRWAKSGLK--------------TD 373 Query: 295 TIFVDPPRSGLDSE-TEKMVQAYPR-ILYISCNPETLCKNLETLSQ-THKVERLALFDQF 351 +FVDPPR GL E V+ P+ I+YISCNP TL ++L+ + +++ R+ D F Sbjct: 374 VVFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQEKSYEFNRIDPVDMF 433 Query: 352 PYTHHMECGVLL 363 P T H+E +L Sbjct: 434 PQTPHVESVTVL 445 >UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Cyanobacteria RepID=Q2JP08_SYNJB Length = 464 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 23/179 (12%) Query: 186 NSFTQPNAAMNIQMLEWALD-VTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPS 244 SF Q N W D + + +L+ YCG G +L LA+ R + E + Sbjct: 295 TSFFQVNTEQAEAFFTWIADQLNLRGEETILDAYCGIGTLTLLLAQRAKRAMGVEALPEA 354 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 VA A+YN N I + Q + E+ + + + +DPPR G Sbjct: 355 VAQARYNAQFNGIASAQFFQGTVEQVLPTLP----------------PADIVVLDPPRRG 398 Query: 305 LDS---ETEKMVQAYPRILYISCNPETLCKNLETL--SQTHKVERLALFDQFPYTHHME 358 D ET K+ + PRI+YISC+P TL ++L+ L ++++ + D FP T H+E Sbjct: 399 CDRQVLETLKLRRP-PRIVYISCHPATLARDLQILLAEGSYRLTQWRAADFFPQTGHVE 456 >UniRef50_C8NCJ6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NCJ6_9GAMM Length = 430 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 94/348 (27%), Positives = 145/348 (41%), Gaps = 39/348 (11%) Query: 26 MAPFSDLVPEVFRSPVS----HYRMRAEFRIWHDGDDLYHIIFDQQTKSRI----RVDSF 77 +A + PE +S HYR RA W D + F + SR+ R + Sbjct: 99 LARIGKIAPETVLPAISGEPWHYRSRARL-AWDDAQQ--ALGFRGRASSRVVNLERCLTL 155 Query: 78 PAASELINQLMTAMIAGVRNNPVLRH-KLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEA 136 PAA + A+ A + L + + D +T V+ + K + D E Sbjct: 156 PAAISARLPDIRALCARLAQQTTLHGVDISEGDSVT------VLRIRLQKAVGDRLAAET 209 Query: 137 EALRDALRAQNLNVHLI-GRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAM 195 A + AQ + L GR T+ K D + LP M Y + FTQ N A+ Sbjct: 210 VARWNESAAQPWQIWLQNGRETR-KHPADAPALAYTLPAYDLTMPY--APDDFTQVNKAL 266 Query: 196 NIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATE-IAKPSVAAAQYNIA 253 N +++ AL + G +L+ +CG GNF+L LAR+ VL E + + V A A Sbjct: 267 NRELVTQALAALQVPPGARVLDFFCGLGNFTLPLARSGADVLGLEGVEEMVVRATANAAA 326 Query: 254 ANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKM- 312 Q R A+ FT ++ + + E +DPPR+G + E + Sbjct: 327 HGLAARCQFRR--ADLFTVTAKQLKAWGK----------AERWLLDPPRAGAQALCEALD 374 Query: 313 -VQAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHME 358 A RI+Y+SCNP TL ++ L+Q +++ L F T H+E Sbjct: 375 GKHAPARIVYVSCNPGTLARDAGILAQKGYRMASGRLLHMFAQTAHVE 422 >UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDB5_9FIRM Length = 431 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 28/186 (15%) Query: 182 RQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIA 241 +Q+E ++Q A N+ E +D +Y G G +A++++ V+ EI Sbjct: 268 KQMEVLYSQAIKAANLTGNETCID-----------MYAGTGTIGMAVSQHAKSVIGVEIV 316 Query: 242 KPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPP 301 K +V A N NH+D+ + A +F D K + + IF+DPP Sbjct: 317 KEAVDNANDNTKMNHLDHCHYVCQDATDFAH--------------DHKEDKIDVIFIDPP 362 Query: 302 RSGL-DSETEKMVQAYP-RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHME 358 R G+ ++ + + P +I+Y+SCNP+TL ++L+ + ++ E + D F T +E Sbjct: 363 RKGMTENGIKDTITMQPDKIVYVSCNPKTLSRDLKIFKEYGYQCEYVQPVDMFCQTIGLE 422 Query: 359 CGVLLT 364 C LT Sbjct: 423 CVAKLT 428 >UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFU4_RHOM4 Length = 466 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 14/184 (7%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPS 244 ++F Q N ++ E A ++ DL+ +LYCG G S+ +A + V+ E+ + Sbjct: 294 DAFFQTNTEQAERLYEVARELAALRPDDLVYDLYCGTGTISIFIAPHVRHVVGVELVASA 353 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 V A+ N AAN I N + A + + + F R G + + + VDPPR+G Sbjct: 354 VENARANAAANGITNCTFV---AGDLLEVLTPA--FVRTHG------RPDVVIVDPPRAG 402 Query: 305 LDSETEKMV-QAYP-RILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVL 362 + + + + Q P R +Y+SCNP+T ++L+ L +++E + D FP+T H+E V Sbjct: 403 MHPKVVRRIGQLRPERFVYVSCNPQTQARDLKLLRDLYRIEAVQPVDLFPHTDHVESVVA 462 Query: 363 LTAK 366 L A+ Sbjct: 463 LRAR 466 >UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6 Tax=Thermococcaceae RepID=Y1172_PYRFU Length = 411 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 97/193 (50%), Gaps = 32/193 (16%) Query: 176 GKEMIYRQVE--------NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLA 227 GKE I +++ NSF Q N+ + +++ +G K ++++Y G G F + Sbjct: 232 GKEFIMEELDGVKYLIHPNSFFQTNSYQAVNLVKTVEKFVEGEK--VVDMYSGVGTFGVY 289 Query: 228 LARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 287 LA+ +V+ + ++ A N N+++ EF A + RE +D Sbjct: 290 LAKKGMKVVGFDSNAFAIEMANKNAEINNVE---------AEFFVASD--RE------VD 332 Query: 288 LKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQTHKVERL 345 +K + +T+ VDPPR+GL + K + + I+Y+SCNP+T N+E L+ + +E L Sbjct: 333 IKGF--DTVIVDPPRAGLHPKLVKRLNDHGPETIVYVSCNPKTFKVNIEQLNN-YIIEEL 389 Query: 346 ALFDQFPYTHHME 358 D FP+T H+E Sbjct: 390 IALDMFPHTPHIE 402 >UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TM76_9BACT Length = 454 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/275 (26%), Positives = 121/275 (44%), Gaps = 32/275 (11%) Query: 96 RNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR 155 R+ +LRH +F+ + +L AVV+ L + + + L++ + V Sbjct: 189 RHKGLLRHMVFRGNREGSLLALAVVTSLRDCRGKELLERSLARLKETTQTSFSGVWNENS 248 Query: 156 ATKTKIELDQDYIDERLP-VAGKEMIYRQVEN--------SFTQPNAAMNIQMLEWALDV 206 + +I + ER + G +I ++ N +F Q N ++ A + Sbjct: 249 SRGNRI------LGERSSTIWGDGVITEKISNYDLSYDGTAFFQVNPFQAERLFLRASSI 302 Query: 207 TKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMA 266 G ++ELY G G ++ LA+ VLA E P++ N++ N +DNV+ I Sbjct: 303 VAERGGAVVELYAGVGALTVILAKAAKTVLAVEEWAPAIERLLENVSRNGLDNVKGICNR 362 Query: 267 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISC 324 AE+ + M ++ K + I VDPPR G SE V + ++Y+SC Sbjct: 363 AEDTVRTM-----------VEAKP---DVIVVDPPRGGCASEVLDAVTESSADMLVYVSC 408 Query: 325 NPETLCKNLETL-SQTHKVERLALFDQFPYTHHME 358 NP TL ++ L S ++ L FD FP T H+E Sbjct: 409 NPSTLARDGAKLVSDGWELATLECFDLFPQTVHVE 443 >UniRef50_Q5R111 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Idiomarina loihiensis RepID=Q5R111_IDILO Length = 450 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 38/227 (16%) Query: 158 KTKIELDQDYIDERLPVAGKEM----------IYRQVENSFTQPNAAMNIQMLEWALDVT 207 KT I L + ++ P+AG M +Y Q F Q N +N +M++ A+D Sbjct: 237 KTNIWLQSE--NDLQPLAGAAMPFDTSIDGDKLYFQ-PGDFLQVNGGINQRMVQQAMDWL 293 Query: 208 KGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMA 266 K K + + + G GNFSL LAR VLA E + N +N +DN+ + Sbjct: 294 KPEKTQRVYDFFAGIGNFSLPLARRAQSVLAVEGVYRMAEQTRINAESNGMDNLSSLSAD 353 Query: 267 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP-----RILY 321 E T + G + DL C +DP R G + + + + P RILY Sbjct: 354 LNEITASDLG-------KPADL---WC----LDPARPGAEGVVKLLHKLKPEHRPQRILY 399 Query: 322 ISCNPETLCKNL-----ETLSQTHKVERLALFDQFPYTHHMECGVLL 363 +SC P+TL +++ E+ +++ L+ D FP THH+E V L Sbjct: 400 VSCAPDTLARDIAGMLTESKGCNYRIIGLSTVDMFPQTHHIETMVCL 446 >UniRef50_B3L5E5 Putative uncharacterized protein n=2 Tax=Plasmodium (Plasmodium) RepID=B3L5E5_PLAKH Length = 825 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 21/167 (12%) Query: 204 LDVTKGSKGDLLELYCGNGNFSLALARNFD----RVLATEIAKPSVAAAQYNIAANHIDN 259 +++++ K + +L CG G S+ A ++ +I + S+ A N N I N Sbjct: 662 INISEKKKNYIFDLCCGTGTISICAANELKGKDVHIVGIDICEDSIICANKNAEMNKIKN 721 Query: 260 VQIIRMAAEE-FTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV---QA 315 + I+ EE F + V E N I VDPPRSGL + ++ Q Sbjct: 722 YKFIQGRVEELFANEIKNVSEKN----------SNVIIIVDPPRSGLANSVLNILSSNQL 771 Query: 316 YPRILYISCNPETLCKNLETL---SQTHKVERLALFDQFPYTHHMEC 359 +I+Y+SCNP TL N+ + ++ +++ L D FP+T H+EC Sbjct: 772 IGQIIYVSCNPITLISNVTHVLFQNENLRMKNLVFVDMFPHTFHLEC 818 >UniRef50_Q54C42 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54C42_DICDI Length = 646 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 95/396 (23%), Positives = 169/396 (42%), Gaps = 80/396 (20%) Query: 23 QSMMAPFSDLVPEVFRSPVS-HYRMRAEFRIWHDGDDLYHIIFD-QQTKSRIRVDSFPAA 80 + M ++VP SPV+ +YR +A++ I +D D+ + F +T + I + + P+ Sbjct: 214 EKMCCGLEEIVP----SPVTENYRNKAQYTIGYDADNKPCVGFALGRTGNGITIVADPSN 269 Query: 81 SELI-----------NQLMTAMIAGVRNNPVLRH------KLFQIDYLTTLSNQAVVSLL 123 + LI N+ +T G P ++ + + TT A V Sbjct: 270 APLISKRSNEIRRLFNEYITEPNLGSNRKPFDKNSHSGFWRQLTVRDFTTGETMATVQFN 329 Query: 124 YHKKLDDEWRQEAEALRDAL-------RAQNLNVHLI-GRATKTKIELDQDYIDERLPVA 175 + +E E L++ R +L++ L G + ++L + ID Sbjct: 330 HKGLTAEELETEKNNLKNYFASLPEEQRITSLSIQLYDGISNSAPVDLAVETID------ 383 Query: 176 GKEMI--------YRQVENSFTQPNAA----MNIQMLEWALDVTKGSKGDLLELYCGNGN 223 G E I +R N+F Q N + ++L+WA V++ + LL++ CG G Sbjct: 384 GPEFIHENLLGCQFRVSANAFFQINTKATELLYSKVLDWA-QVSQDTT--LLDICCGTGT 440 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAM----NGVRE 279 +++ +V+ EI+ +V + N N IDN + + AE+ + NG ++ Sbjct: 441 IGQCISKKVKKVIGLEISPDAVIDSINNAKLNKIDNAEYLVGKAEDTLPTLLTKSNGGKD 500 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY---PRILYISCNPET-------L 329 GI VDPPR GL + K ++ + +++Y+SCN + L Sbjct: 501 -QEFIGI-----------VDPPRGGLHGDVLKAIRTFEPIKKLVYVSCNQNSLIPDAAKL 548 Query: 330 CKNL-ETLSQTHKVERLAL-FDQFPYTHHMECGVLL 363 CK + +T+ T V A+ FD FP+T +E VL Sbjct: 549 CKGISKTMKGTPFVPTKAIAFDLFPHTDLVELVVLF 584 >UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embryophyta RepID=Q9LU28_ARATH Length = 554 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 32/214 (14%) Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCG 220 +D I E L + + ++ NSF Q N ++L ++ + G KGD +L+L+CG Sbjct: 355 KDTITEVL----RGLTFQISANSFFQTNT-HQAEVLYKLIEESAGLKGDGSEVVLDLFCG 409 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G L LAR V E+ ++ A N N I+N I+ + + Sbjct: 410 TGTIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENATFIQGDLNKIGEDFG----- 464 Query: 281 NRLQGIDLKSYQCETIFVDPPRSG--LDSETEKMVQAYPRILYISCNPET-------LCK 331 N D+ + DP R G + + PRI+Y+SCNP T LC Sbjct: 465 NNFPKPDI-------VISDPNRPGMHMKLIKFLLKLKSPRIIYVSCNPATCARDLDYLCH 517 Query: 332 NLE--TLSQTHKVERLALFDQFPYTHHMECGVLL 363 +E L +K+ + D FP+T H+EC LL Sbjct: 518 GVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLL 551 >UniRef50_A5DBA0 Putative uncharacterized protein n=2 Tax=Pichia guilliermondii RepID=A5DBA0_PICGU Length = 532 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 26/201 (12%) Query: 174 VAGKEMIYRQVENSFTQPNAAMNIQMLEWA---LDVTKGSKGDLLELYCGNGNFSLALAR 230 V G+E + E F Q N ++ +L++ L ++ L++ YCG+G FS++ + Sbjct: 344 VDGREFEFSAGE--FFQNNNSILPAVLQYVRSNLAISDKQDNYLVDAYCGSGLFSISCSD 401 Query: 231 NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 290 N +V+ E++ SV A+ N A N+I NV+ I AEE + ID + Sbjct: 402 NVKKVIGVEVSADSVKFAERNAANNNIANVKFIVGKAEEI------------FKDIDTPA 449 Query: 291 YQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETL------SQTHKV 342 Q ++ +DPPR G D + Y +I+YISCN + +++E +KV Sbjct: 450 SQT-SVILDPPRKGCDDVFLNQLSEYNPVKIVYISCNVHSQARDVEWFLNNTVNGANYKV 508 Query: 343 ERLALFDQFPYTHHMECGVLL 363 E + FD FP THH+E +L Sbjct: 509 ESIKGFDFFPQTHHVESVAVL 529 >UniRef50_A4RSF2 Predicted protein n=2 Tax=Ostreococcus RepID=A4RSF2_OSTLU Length = 234 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 118/238 (49%), Gaps = 34/238 (14%) Query: 131 EWRQEAEALRDALRAQNLNVHLIGRATKT-KIELDQDYIDE--RLPVAGKEMIYRQVENS 187 E+ + AL DA+ V + + KT K+ + +DY+ E RL V G+ ++++ VE S Sbjct: 2 EFAEAMRALDDAV------VGCVRKRKKTPKLVVGRDYVTETTRL-VDGRSVVFKHVEGS 54 Query: 188 FTQPNAAMN----IQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNF-DRVLATEIAK 242 F+ PN + ++ D+ G K +ELY G GN + +A F A EI Sbjct: 55 FSNPNGGVAELTANHLVRICADIA-GPKTKFIELYAGCGNHTCCMAPQFPGGAFAVEIDP 113 Query: 243 PSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPR 302 V AA+ N A N + +I+ AE++ + RE + D+ + VDPPR Sbjct: 114 VLVEAARENFARNGV-RAEIVCERAEDWIAS----RE-SPTNDRDV------VLLVDPPR 161 Query: 303 SGLDSETEKMV-QAYPRILYISCNPETLCKNLET-----LSQTHKVERLALFDQFPYT 354 GLD+ T +V + + ++Y++C+ E+L ++++ ++ ++ LA FD P + Sbjct: 162 GGLDARTLDVVTREFDDVIYVACDCESLKRDIDDERVGFAARGFELTSLACFDHAPTS 219 >UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10VH2_TRIEI Length = 485 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 45/208 (21%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLALAR-------NFDR--- 234 N+F Q N +++E + S +++ + YCG G F L+LA+ N++ Sbjct: 290 NTFFQVNTKTTEKLVEIVIQELALSNSEIIVDAYCGVGTFCLSLAKYLQQVDINYNESLN 349 Query: 235 ---------------VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 V+ E+ ++ A++N NH+ NV E Sbjct: 350 IVTEDLSEIKLRKSMVIGLEVQGVAIEQAKFNAKINHLTNVHFYEGKVERL--------- 400 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLD-SETEKMVQAYP-RILYISCNPETLCKNLETLS 337 L +++K + + +DPPR G D S E +++ P RI+YISC P TL ++L+ L Sbjct: 401 ---LPQLEVKP---DIVLLDPPRKGCDRSVLETLLEILPERIVYISCKPATLARDLKFLC 454 Query: 338 QTHK--VERLALFDQFPYTHHMECGVLL 363 T K + ++ D FP T H+EC L Sbjct: 455 STGKYCLNKVQPVDFFPQTAHVECAAFL 482 >UniRef50_C1XK03 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XK03_MEIRU Length = 412 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 86/183 (46%), Gaps = 23/183 (12%) Query: 186 NSFTQPNA-AMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPS 244 SF Q N A + E A V G K +ELY G+G SL LA F V+A EI + Sbjct: 248 QSFAQVNPRAAGLLFQEAAQVVEPGRKA--VELYAGSGVLSLHLAHRFTEVVAIEINPSA 305 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 V + + + N+ +R + R R DL + VDPPR+G Sbjct: 306 VKRGEADRDRLGVQNLVFVR----------DDARVLGRHLPADL-------VMVDPPRAG 348 Query: 305 LDSET-EKMVQAYPR-ILYISCNPETLCKNLETLSQTHKVERLA-LFDQFPYTHHMECGV 361 L E +++ PR ILYI+C+P T +++ L Q R A +D +P+THH+E Sbjct: 349 LAPEVLAGLLEKKPRQILYIACDPATWARDIGRLVQGGYRLRFARPYDFYPFTHHVEVLS 408 Query: 362 LLT 364 LL+ Sbjct: 409 LLS 411 >UniRef50_UPI0001BC2D8B 23S rRNA methyluridine methyltransferase n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2D8B Length = 401 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 32/193 (16%) Query: 187 SFTQPNAAMNI----QMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFD-----RVLA 237 SF Q N + I Q+ W ++ S L +LYCG G F+L A RV Sbjct: 222 SFFQTNTDVAIGLYNQVAAWVDEIAPSS---LWDLYCGVGGFALYCAGTTGQQSPRRVTG 278 Query: 238 TEIAKPSVAAAQYNIAANHIDN-----VQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 E+++ ++ +A+ + D+ V+ I A EF +A N G + Sbjct: 279 VELSEQAIESAKISAVELGFDSQSGATVEFIADDATEFAEA-------NLASG-----ER 326 Query: 293 CETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQTHKVERLALFDQ 350 + + V+PPR G+ + ++ I+Y SCNP TL K+L+ + ++ VER +FD Sbjct: 327 PDCVIVNPPRRGIGARLSTALEDSGVEHIVYSSCNPLTLAKDLDQMP-SYTVERARVFDM 385 Query: 351 FPYTHHMECGVLL 363 FP+T H+E V+L Sbjct: 386 FPHTKHLEVAVVL 398 >UniRef50_O54099 Uncharacterized RNA methyltransferase SCO5901 n=27 Tax=Actinomycetales RepID=Y5901_STRCO Length = 458 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 83/160 (51%), Gaps = 23/160 (14%) Query: 211 KGDL-LELYCGNGNFSLALA-RNFDR--VLATEIAKPSVAAAQYNIAANHIDNVQIIRMA 266 KGD+ L+LYCG G F+ ALA R D+ VL E K +V A++N+AA D V+I + Sbjct: 308 KGDMALDLYCGVGLFAGALADRVGDQGAVLGIESGKRAVEDARHNLAA--FDRVRIEQGK 365 Query: 267 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISC 324 E GID + + I +DPPR+G +T + + RI Y++C Sbjct: 366 VESVLPRT----------GID----EVDLIVLDPPRAGAGRKTVQHLSTLGARRIAYVAC 411 Query: 325 NPETLCKNLETLSQT-HKVERLALFDQFPYTHHMECGVLL 363 +P L ++L ++V L +FD FP T H+EC +L Sbjct: 412 DPAALARDLGYFQDGGYRVRTLRVFDLFPMTAHVECVAIL 451 >UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Neisseria RepID=D0WBI8_NEILA Length = 443 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 90/204 (44%), Gaps = 36/204 (17%) Query: 172 LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWA---LDVTKGSKGDLLELYCGNGNFSLAL 228 LP G EM +R FTQ N N M+ A LD+ +G + + +L+CG GNFSL + Sbjct: 253 LPEFGIEMPFR--PGDFTQINTDTNRLMVSRAVKMLDIRQGER--IADLFCGLGNFSLPM 308 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 ++ V+ E A+ V A N N D Q +AA F V + R Sbjct: 309 VKSGADVVGIEGAENLVRRAWQNARLNGCDG-QTDFIAANLFDCTEKTVASWGRF----- 362 Query: 289 KSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETL---------- 336 + + +DPPRSG + + Y +I+Y+SCNP TL ++ L Sbjct: 363 -----DKMLIDPPRSGAYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYILSGA 417 Query: 337 ------SQTHKVERLALFDQFPYT 354 +QT E +A+FD P T Sbjct: 418 GIMNMFAQTSHTESVAVFDLLPQT 441 >UniRef50_Q6MEM7 Uncharacterized RNA methyltransferase pc0248 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y248_PARUW Length = 434 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 20/188 (10%) Query: 177 KEMIYRQVENSFTQ--PNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDR 234 + +I+R +F Q P ++ I +L + SK +L+LYCG G SL LA Sbjct: 253 ENLIFRFTPQAFIQNHPEQSLYIYKKICSLTIQLKSK-KILDLYCGFGITSLLLASQGHF 311 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC- 293 V E ++ A+ N NH+ +V+ + E ++ I LKS +C Sbjct: 312 VTGIEYNSDAIRFAKENSKLNHLPHVEFLEGDVE-------------KILPICLKSQKCV 358 Query: 294 ETIFVDPPRSGLDSETEK-MVQAYPR-ILYISCNPETLCKNLETLSQ-THKVERLALFDQ 350 + + V+PPR GL K ++ A P ++YISC P TL ++L L + +++ +D Sbjct: 359 DLVIVNPPRIGLSKSVIKILMSALPEDMIYISCMPSTLARDLSILCEDLYEIHECTAYDM 418 Query: 351 FPYTHHME 358 FP T H+E Sbjct: 419 FPQTSHVE 426 >UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 Tax=Streptococcaceae RepID=YWFF_LACLA Length = 513 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 14/155 (9%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 +++ YCG G A+A+ V +I S+ A+ N + N E +A Sbjct: 334 VIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLGLKNCHY------EIGKA 387 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCK 331 + +N+ ++ + VDPPR+GLD + + +P +++Y+SCN TL K Sbjct: 388 ERIIPNWNK------SGHRATAMIVDPPRTGLDDALLETITKFPPEKMVYVSCNVSTLAK 441 Query: 332 NLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 +L L+ +KVE + D FP+T E V LT + Sbjct: 442 DLVVLANFYKVEYIQSVDMFPHTARTEAVVKLTKR 476 >UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI04_EUBR3 Length = 493 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 94/199 (47%), Gaps = 12/199 (6%) Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD--LLELYCGNGNFSLALARNFD 233 G + Y+ SF Q N ++ AL G G+ + +LYCG G SL L++ Sbjct: 291 GTGITYQISPQSFYQVNPKQTEKLYSTALAFA-GLTGNENVWDLYCGIGTISLFLSQKAK 349 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAM--NGVREFNRLQGIDLKSY 291 +V EI ++ A+ N N I N Q AE+ N ++ N + Sbjct: 350 QVYGVEIVPQAIEDAKNNAKLNGITNAQFFVGKAEDVLPQFYENAKKKENITDDTASTGH 409 Query: 292 ----QCETIFVDPPRSGLDSET-EKMVQAYP-RILYISCNPETLCKNLETLS-QTHKVER 344 + + I VDPPR G D + + M+ P RI+Y+SC+ TL ++L+ L + +++ + Sbjct: 410 TDMLRPDVIVVDPPRKGCDEKCLDTMLAMSPERIVYVSCDSATLARDLKILCEEKYELMK 469 Query: 345 LALFDQFPYTHHMECGVLL 363 FDQF +T H+E LL Sbjct: 470 WQAFDQFSHTTHVESICLL 488 >UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GTB6_SYNR3 Length = 455 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 75/156 (48%), Gaps = 19/156 (12%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 L++ YCG G L L + R++ E ++ S+ AQ N N +++ + E Q Sbjct: 310 LVDAYCGVGTLGLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSVERRLQ- 368 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCK 331 EF + + +DPPR GLD+ + ++ P R+ Y+SCNP TL + Sbjct: 369 -----EFLPFT---------DVLLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLAR 414 Query: 332 NLETLSQTHKVE--RLALFDQFPYTHHMECGVLLTA 365 +L L + E ++ FD FP T H+E +LT+ Sbjct: 415 DLALLCADQRFELTKVVPFDFFPQTTHIEAMAILTS 450 >UniRef50_Q31DJ1 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31DJ1_THICR Length = 407 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 14/175 (8%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 F Q NA MN QM+ ALD +K +L+L+CG GNF+L +A+ V+ E V Sbjct: 222 GFVQVNAEMNEQMVNKALDWLDLNKEQRVLDLFCGVGNFTLPIAQQVKEVVGIEGETDLV 281 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 AQ+N + H + + + N R+ + Y + + +DP R G Sbjct: 282 QMAQHNASRAHCEQATFYQADLFKDVTPQNWFRK---------QKY--DRVLLDPGRQGA 330 Query: 306 DSETEKMVQ-AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHME 358 + + Q +I+Y+SCN TL ++++ L Q +++++ + D FP+T H E Sbjct: 331 YQLCKGLGQLKADKIVYVSCNASTLIRDVKELEKQGYQLKKAIMVDMFPHTSHTE 385 >UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protein n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC40A Length = 486 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 85/373 (22%), Positives = 165/373 (44%), Gaps = 42/373 (11%) Query: 12 EAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS----HYRMRAEFRIWHDGDDLYHIIFDQQ 67 +A L ++ L+ MM + P V+++P++ YR +A I + + F + Sbjct: 136 DAALEQRDRALKVMMERQLSMKPHVWQAPLAGPRPQYRRKARLAIDARNPNQIKLGFREA 195 Query: 68 TKSR-IRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLS--NQAVVSLLY 124 S I ++ P + +++L+ + + RH I +++ ++ N + + + + Sbjct: 196 NSSNVINAETCPILVDPLSKLIGPLRDALTGFESARH----IGHISLIAGDNTSHLVIKH 251 Query: 125 HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQV 184 K L+ E L DA+ ++ +N +++L+ R G +M+ V Sbjct: 252 TKALEAE-------LIDAV-SELVNTSSSVGVCGIELKLENKQAQIRSVGRGTDMVMNTV 303 Query: 185 E--------NSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRV 235 N F Q N +N +M+ A+ + + + + G GNF+L +A+ +V Sbjct: 304 NSCSISPSANDFIQINKVVNEKMVNQAIGWLNPEPNERVADWFSGLGNFTLPIAKLGAKV 363 Query: 236 LATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCET 295 A E V A+ N I+NV+ + + + T E + G D Sbjct: 364 QAVEGVAEMVRRAKDNAQQQGIENVEWLHLDLADKTNV-----EASLQLGFD-------K 411 Query: 296 IFVDPPRSGLDSETEKMVQAYPR-ILYISCNPETLCKNLETL-SQTHKVERLALFDQFPY 353 + +DP R G + +V+A P+ I+Y+SCNP T ++ + L +++E+ + + FP+ Sbjct: 412 VLLDPSREGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLIDGGYEMEKAGVAEMFPF 471 Query: 354 THHMECGVLLTAK 366 THHME L T K Sbjct: 472 THHMEMMALFTRK 484 >UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGS6_PETMO Length = 446 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 96/183 (52%), Gaps = 21/183 (11%) Query: 187 SFTQPNAAMNIQMLEWALDVTKGS---KGDLLELYCGNGNFSLALARNFDRVLATEIAKP 243 SF Q N + ++L L+ K + +L+LY G G FS+ + F + + E +K Sbjct: 275 SFFQNNYNVTQKLLRHILEYFKSNAQKDATMLDLYSGVGLFSIYFSPLFKHIESVETSKV 334 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 SV AA IA +HI+ FT+ +N + ++ + S + + + +DPPR Sbjct: 335 SVKAA---IANSHIN-----------FTKNVNFILASSKPYLMKNSSKRFDYVILDPPRK 380 Query: 304 GLDSETEKMVQAYPR--ILYISCNPETLCKNLETLSQT-HKVERLALFDQFPYTHHME-C 359 GL+ + +++ + + I+Y+SC+P T ++L ++ ++ + FD FP+++H+E Sbjct: 381 GLEKKEIQLLSSMAKKGIIYVSCDPSTFARDLNLFTKNGFTLKSVQPFDMFPHSYHIENV 440 Query: 360 GVL 362 G+L Sbjct: 441 GIL 443 >UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Gammaproteobacteria RepID=RUMA_FRAT1 Length = 449 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 24/235 (10%) Query: 134 QEAEALRDALRAQNLNVHLIGRATKTKIEL--DQDYIDERL---PVAGKEMIYRQVENSF 188 ++ E LR + N ++L + T L D ++L P AG ++ + N F Sbjct: 221 EDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKLSYQPAAGIDIGFEP--NDF 278 Query: 189 TQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAA 247 TQ N +N +M++ A+++ S+ D +++L+CG GNF+L ++++ V+ E V Sbjct: 279 TQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAKTVIGVEGEPTMVKR 338 Query: 248 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDS 307 A+ N+I NV AA F ++ FN +++ + +DPPR+G Sbjct: 339 AKETADNNNITNVNF--YAANLF-ESFEDKEWFN--------NFEYNKMLLDPPRAGA-Q 386 Query: 308 ETEKMVQAY--PRILYISCNPETLCKNLETLSQT--HKVERLALFDQFPYTHHME 358 E ++ + RI+Y+SC+ L ++ L T +K+ + D FP+T H+E Sbjct: 387 EVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDMFPHTMHVE 441 >UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FU98_9FIRM Length = 498 Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 82/153 (53%), Gaps = 18/153 (11%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 + +LY G G + L+ +V+ EI + +V AA+ N N + N + I A + + Sbjct: 356 VFDLYSGTGTIAQMLSPVAKKVIGVEIIEEAVEAAKENAQLNGLHNCEFI---AGDVLKV 412 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCK 331 ++ + E + + I +DPPR G++ + + + Y P+++YISC P +L + Sbjct: 413 IDSIEE------------KPDYIVLDPPRDGINPKALEKIIRYNVPQMVYISCKPTSLAR 460 Query: 332 NLETL-SQTHKVERLALFDQFPYTHHMECGVLL 363 +LE L ++ ++V+++ D FP T H+E VL+ Sbjct: 461 DLEVLQARGYEVKKVCCVDMFPSTFHVESVVLM 493 >UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12 Tax=Burkholderia cepacia complex RepID=RUMA_BURCM Length = 465 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 93/203 (45%), Gaps = 26/203 (12%) Query: 168 IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSL 226 +D LP G M ++ + FTQ N +N ++ AL + S+ D +L+L+CG GNF+L Sbjct: 269 LDYTLPEFGIRMPFKPTD--FTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTL 326 Query: 227 ALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286 LAR V+ E + A N N +D R + G Sbjct: 327 PLARLSREVMGIEGSDTLTTRALANARENGVDG------------HTTFACRNLFEVTGD 374 Query: 287 DLKSYQC-ETIFVDPPRSGLDSETEKMVQ-------AYP-RILYISCNPETLCKNLETL- 336 DL++ + +DPPR G + ++ + + P RI+Y+SCNP TL ++ L Sbjct: 375 DLRALGAFDKFLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLV 434 Query: 337 -SQTHKVERLALFDQFPYTHHME 358 ++++ + + FP T H+E Sbjct: 435 HEAGYRLKGAGVVNMFPNTSHVE 457 >UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacteria RepID=A4XGR8_CALS8 Length = 452 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 19/156 (12%) Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE-EFTQ 272 + ++Y G G S+ +A +V EI + +V A+ + N I N++ I AE E + Sbjct: 306 VFDVYSGIGTISMFIAPFCKKVYTIEIVEDAVEDAKKSSKNNGISNIEFICGRAEIEIPK 365 Query: 273 AM-NGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQ-AYPRILYISCNPETL 329 + NG+ + + +DPPRSG + E E +++ P I+Y+SCNP TL Sbjct: 366 LLKNGIIP--------------QAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTL 411 Query: 330 CKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLT 364 ++ L S +++ + D FP T H+EC VL+T Sbjct: 412 ARDSSILFSNGYEILEVQPVDMFPQTFHVECVVLMT 447 >UniRef50_B9XDW9 RNA methyltransferase, TrmA family n=1 Tax=bacterium Ellin514 RepID=B9XDW9_9BACT Length = 440 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 16/179 (8%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPS 244 +SF Q N + +++ A K S L+++YCG G FSL L + + E+ + + Sbjct: 260 DSFFQNNFFLLPELVGVARQFLKDSGSRFLVDVYCGVGFFSLELGDLVEGFVGVELDQLA 319 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 + AA+ N ++ N + + AEE + ++ F S + T+ +DPPR+G Sbjct: 320 IKAARRNAEKRNLKNGEFVTGRAEEMLPGL--MQRF---------SPEATTVLIDPPRTG 368 Query: 305 LDSET-EKMVQAYP-RILYISCNPETLCKNLETLSQTHKVERLALF--DQFPYTHHMEC 359 E+ E + Q P +++Y+SC+P T+ ++L L E + + D FP T H+EC Sbjct: 369 CLPESLELLRQTRPNQLIYVSCHPATMARDLNVLCAEGVFELVKVIPCDMFPQTAHVEC 427 >UniRef50_C7R2N2 23S rRNA (Uracil-5-)-methyltransferase RumB n=2 Tax=Micrococcineae RepID=C7R2N2_JONDD Length = 382 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 37/204 (18%) Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNF 224 Q + PVA +YRQ E +W D + +L+CG G F Sbjct: 207 QSFFQTNTPVAAH--LYRQAE---------------QWIAD---ARPQHVWDLFCGVGGF 246 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 +L A + +RV EI+ ++ +A+ + A + NV + A F+ + RL Sbjct: 247 ALHAAPHANRVTGVEISAEAIESARTSAAERALTNVTFDALDATTFSTGHSA-----RLA 301 Query: 285 --GIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQTH 340 G DL + V+PPR G+ + + + A ++Y SCN +L K+L + Q Sbjct: 302 DGGPDL-------VVVNPPRRGIGVDLAEWLNASDAHTVVYSSCNARSLAKDLTAMPQFQ 354 Query: 341 KVERLALFDQFPYTHHMECGVLLT 364 R LFD FP+T+H+E VL++ Sbjct: 355 PT-RARLFDMFPHTNHVETVVLMS 377 >UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSE5_SYNAS Length = 429 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 138/338 (40%), Gaps = 56/338 (16%) Query: 33 VPEVFRSPVSH-YRMRAEFRIWHDGDDLYHIIFDQQTKSRI-RVDSFPAASELINQLMTA 90 V +V SP+ + YR +AEF I L I + + SRI V E +N+ +TA Sbjct: 135 VRDVIASPMPYAYRGKAEFHISFKSGRLPVIGYKEAADSRIVPVSRCAIVDESVNRSLTA 194 Query: 91 MIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNV 150 LR KL I + ++ W +A D + Sbjct: 195 ----------LRGKLNAISAAGRRGGKKEERVIL-------WSDTGKAAVDPGVSGGRG- 236 Query: 151 HLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK-G 209 L+ R K K+ R P G F Q N+A+ M++ + Sbjct: 237 GLVMRPVKEKML--------RAPFQG-----------FFQANSALVGSMVDSVIRACALT 277 Query: 210 SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 269 K +L+ YCG+G FSL LA + ++ + +V A N++ I N AE Sbjct: 278 GKETVLDAYCGSGLFSLFLASSARQLFGVDADGEAVHCAAENLSKEGISN-------AEF 330 Query: 270 FTQAMNGVREFNRLQGIDLKSYQCETIFV-DPPRSGLDSETEKMVQAY--PRILYISCNP 326 F + + L+ LK+ Q I V DPPR G S+ + +++ RI+YISCNP Sbjct: 331 FAGDVGEI-----LRHTFLKTQQSVDIVVLDPPRIGCSSDVLEALKSLGPARIIYISCNP 385 Query: 327 ETLCKNLETLSQTHKVER-LALFDQFPYTHHMECGVLL 363 T +++ L + + R L D FP T H+E LL Sbjct: 386 ATQARDVRRLRDSGYILRDLQPIDMFPQTKHIEIVGLL 423 >UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1 Tax=Nanoarchaeum equitans RepID=Y053_NANEQ Length = 447 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 23/181 (12%) Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDRVLATEIAKPS 244 NSF Q N+ + +++ + + S+ D+ L+LY G G FSL +A +V+ EI + + Sbjct: 280 NSFFQTNSYQAVNLVKIVKEFLEPSENDVVLDLYSGVGLFSLQIANEVKKVIGIEIVEEA 339 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 V A+ N + N+ID + I E+ + I VDPPR+G Sbjct: 340 VEMAKLNASINNID-AEFIASPVEKAPII------------------KANKIIVDPPRAG 380 Query: 305 LDSETEKMVQAY--PRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVL 362 L ++ + ++ I+Y+SCNP T +++ L + +K+ + D FP T H+E +L Sbjct: 381 LTNKAIEYIEKINPDTIVYVSCNPYTQKRDINKL-KGYKIIDMQPLDMFPNTPHIENVIL 439 Query: 363 L 363 + Sbjct: 440 M 440 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7MXY6 tRNA (uracil-5-)-methyltransferase n=78 Tax=Prot... 442 e-123 UniRef50_A5F4M4 tRNA (uracil-5-)-methyltransferase n=202 Tax=Gam... 442 e-123 UniRef50_A8GYV6 tRNA (uracil-5-)-methyltransferase n=12 Tax=Gamm... 432 e-120 UniRef50_A0KQR3 tRNA (uracil-5-)-methyltransferase n=93 Tax=Prot... 432 e-119 UniRef50_A6W3C7 tRNA (uracil-5-)-methyltransferase n=9 Tax=Gamma... 400 e-110 UniRef50_A6QBC0 tRNA (uracil-5-)-methyltransferase n=4 Tax=Epsil... 394 e-108 UniRef50_A4BHH3 TRNA (Uracil-5-)-methyltransferase n=1 Tax=Reine... 392 e-108 UniRef50_Q31JA4 tRNA (uracil-5-)-methyltransferase n=5 Tax=Prote... 376 e-103 UniRef50_A5EXH9 tRNA (uracil-5-)-methyltransferase n=1 Tax=Diche... 373 e-102 UniRef50_A6DAM4 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Camin... 370 e-101 UniRef50_A8HPV8 tRNA (Uracil-5-)-methyltransferase (Fragment) n=... 370 e-101 UniRef50_A4RUE5 Predicted protein n=8 Tax=cellular organisms Rep... 368 e-100 UniRef50_A8EWU8 tRNA (uracil-5-)-methyltransferase n=3 Tax=Campy... 368 e-100 UniRef50_B9LA97 tRNA (uracil-5-)-methyltransferase n=1 Tax=Nauti... 361 2e-98 UniRef50_C6RGK1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Campy... 353 4e-96 UniRef50_C5EY89 tRNA (Uracil-5-)-methyltransferase n=3 Tax=Helic... 349 8e-95 UniRef50_C1E3C6 Predicted protein n=2 Tax=Micromonas RepID=C1E3C... 348 2e-94 UniRef50_B9D5E5 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Campy... 348 2e-94 UniRef50_A4A8C7 tRNA (Uracil-5-)-methyltransferase n=4 Tax=Gamma... 344 4e-93 UniRef50_A0RPL1 tRNA (uracil-5-)-methyltransferase n=4 Tax=Campy... 337 5e-91 UniRef50_C5ZX30 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Helic... 336 5e-91 UniRef50_A1VZH5 tRNA (uracil-5-)-methyltransferase n=17 Tax=Camp... 323 5e-87 UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clost... 317 3e-85 UniRef50_Q7U326 tRNA (uracil-5-)-methyltransferase n=2 Tax=Helic... 315 2e-84 UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bact... 315 3e-84 UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=2... 313 9e-84 UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethi... 310 4e-83 UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=... 307 3e-82 UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacil... 307 5e-82 UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clost... 306 7e-82 UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desul... 306 1e-81 UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 304 2e-81 UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n... 303 5e-81 UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein ... 302 1e-80 UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clost... 302 1e-80 UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonel... 302 2e-80 UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=... 301 2e-80 UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Therm... 299 1e-79 UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1... 298 2e-79 UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halot... 298 3e-79 UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 297 3e-79 UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veill... 296 6e-79 UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostri... 295 1e-78 UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdema... 294 3e-78 UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostri... 290 5e-77 UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopisciu... 290 6e-77 UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammon... 290 6e-77 UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepI... 289 9e-77 UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bactero... 289 9e-77 UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bactero... 289 1e-76 UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacte... 289 1e-76 UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5E... 288 2e-76 UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteri... 288 3e-76 UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacte... 286 1e-75 UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=... 284 4e-75 UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicu... 283 5e-75 UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n... 283 5e-75 UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotom... 283 6e-75 UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteri... 282 1e-74 UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacil... 280 6e-74 UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1... 280 7e-74 UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillac... 279 1e-73 UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae Rep... 278 2e-73 UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=... 278 2e-73 UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzym... 278 2e-73 UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostri... 278 3e-73 UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 277 4e-73 UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Therm... 277 6e-73 UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 ... 276 7e-73 UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 276 1e-72 UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 ... 276 1e-72 UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=... 275 1e-72 UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 ... 275 2e-72 UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacte... 275 2e-72 UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=S... 275 2e-72 UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 273 6e-72 UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=P... 273 8e-72 UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10... 273 8e-72 UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 273 1e-71 UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA ... 272 1e-71 UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachl... 272 1e-71 UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=1... 271 2e-71 UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desul... 271 2e-71 UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candi... 271 3e-71 UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=... 271 3e-71 UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 271 3e-71 UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 270 6e-71 UniRef50_A9BFH8 RNA methyltransferase, TrmA family n=1 Tax=Petro... 270 6e-71 UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacte... 269 1e-70 UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=... 269 1e-70 UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25... 269 1e-70 UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natra... 268 4e-70 UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 267 4e-70 UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desul... 267 5e-70 UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desul... 267 5e-70 UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geoba... 267 6e-70 UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 266 6e-70 UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus Rep... 266 8e-70 UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 ... 266 1e-69 UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 ... 265 2e-69 UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopo... 265 2e-69 UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=unculture... 265 2e-69 UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdema... 265 2e-69 UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=1... 264 3e-69 UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81... 264 3e-69 UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 ... 264 4e-69 UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevot... 264 5e-69 UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1... 263 6e-69 UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spiro... 263 7e-69 UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 263 9e-69 UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 ... 263 9e-69 UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttle... 263 1e-68 UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embr... 263 1e-68 UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna R... 261 2e-68 UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 261 3e-68 UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18... 261 3e-68 UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 261 3e-68 UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 261 3e-68 UniRef50_C8WNQ3 RNA methyltransferase, TrmA family n=2 Tax=Corio... 261 3e-68 UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 261 4e-68 UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desul... 260 5e-68 UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostri... 260 6e-68 UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=... 260 6e-68 UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacil... 260 7e-68 UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 259 1e-67 UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moore... 259 1e-67 UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcu... 259 1e-67 UniRef50_UPI00003979FC COG2265: SAM-dependent methyltransferases... 259 1e-67 UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Ta... 259 2e-67 UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bact... 258 2e-67 UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 258 2e-67 UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 258 3e-67 UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 258 3e-67 UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 257 4e-67 UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desul... 257 4e-67 UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntr... 257 6e-67 UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protei... 256 7e-67 UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marin... 256 8e-67 UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 T... 256 9e-67 UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protei... 256 1e-66 UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desul... 256 1e-66 UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 256 1e-66 UniRef50_C5CUM3 RNA methyltransferase, TrmA family n=1 Tax=Vario... 256 1e-66 UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=De... 256 1e-66 UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 255 1e-66 UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 255 2e-66 UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodo... 255 2e-66 UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14... 255 2e-66 UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=N... 254 3e-66 UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 254 3e-66 UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptoco... 254 3e-66 UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desul... 254 4e-66 UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desul... 254 5e-66 UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacte... 253 8e-66 UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 252 1e-65 UniRef50_D2MNL8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 252 1e-65 UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22... 252 1e-65 UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimo... 252 2e-65 UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 252 2e-65 UniRef50_UPI000196C3B9 hypothetical protein CATMIT_02351 n=1 Tax... 251 3e-65 UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 251 3e-65 UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Rosebur... 251 3e-65 UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4R... 251 3e-65 UniRef50_D0J1B5 RNA methyltransferase, TrmA family n=1 Tax=Comam... 251 3e-65 UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=... 251 4e-65 UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 251 4e-65 UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synec... 250 5e-65 UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=... 250 6e-65 UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12... 250 6e-65 UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chrom... 250 7e-65 UniRef50_B6BUM1 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=B... 249 9e-65 UniRef50_A1SSB8 23S rRNA (uracil-5-)-methyltransferase rumA n=2 ... 249 1e-64 UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyro... 249 2e-64 UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas ... 249 2e-64 UniRef50_Q2L016 23S rRNA (uracil-5-)-methyltransferase rumA n=58... 248 2e-64 UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacte... 248 2e-64 UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydro... 248 3e-64 UniRef50_C7GZ13 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 247 4e-64 UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=13... 247 4e-64 UniRef50_B7CCQ1 Putative uncharacterized protein n=1 Tax=Eubacte... 247 5e-64 UniRef50_C1E1T7 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 247 5e-64 UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmo... 246 7e-64 UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenel... 246 8e-64 UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 246 9e-64 UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase ... 246 1e-63 UniRef50_A5CXB2 RNA methyltransferase, TrmA family n=2 Tax=Gamma... 246 1e-63 UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(... 246 1e-63 UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzym... 245 2e-63 UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36... 245 2e-63 UniRef50_C7MM03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 245 2e-63 UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclass... 245 2e-63 UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n... 245 2e-63 UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 ... 244 3e-63 UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19... 244 3e-63 UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzym... 244 4e-63 UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Enta... 243 6e-63 UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachl... 243 7e-63 UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacte... 243 8e-63 UniRef50_D1CDT6 RNA methyltransferase, TrmA family n=1 Tax=Therm... 242 1e-62 UniRef50_B4RXM8 RNA methyltransferase, TrmA family protein n=1 T... 242 1e-62 UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 242 2e-62 UniRef50_Q29DJ3 GA17699 n=7 Tax=Drosophila RepID=Q29DJ3_DROPS 242 2e-62 UniRef50_B5JSQ3 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=g... 242 2e-62 UniRef50_Q72VP7 Uncharacterized RNA methyltransferase LIC_10249 ... 242 2e-62 UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Corio... 242 2e-62 UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolum... 241 2e-62 UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collins... 241 3e-62 UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=... 241 3e-62 UniRef50_Q1IVF7 (Uracil-5)-methyltransferase n=1 Tax=Candidatus ... 241 3e-62 UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n... 241 3e-62 UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinel... 241 4e-62 UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococ... 240 5e-62 UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1... 240 6e-62 UniRef50_Q6ANA2 Related to RNA-methyltransferase n=1 Tax=Desulfo... 240 7e-62 UniRef50_B5RIS0 FI05218p (Fragment) n=8 Tax=melanogaster subgrou... 240 7e-62 UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingell... 240 7e-62 UniRef50_C1EBD1 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 240 7e-62 UniRef50_C7NAY8 (Uracil-5)-methyltransferase n=3 Tax=Leptotrichi... 240 8e-62 UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1... 239 9e-62 UniRef50_C8W8Q1 RNA methyltransferase, TrmA family n=1 Tax=Atopo... 239 1e-61 UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimo... 239 1e-61 UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase Ru... 238 2e-61 UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 238 2e-61 UniRef50_A6GEE5 RNA methyltransferase, TrmA family protein n=1 T... 238 2e-61 UniRef50_A0YBC1 Putative uncharacterized protein n=1 Tax=marine ... 238 2e-61 UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdema... 238 2e-61 UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 ... 238 3e-61 UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 T... 237 4e-61 UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=D... 237 4e-61 UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petro... 236 8e-61 UniRef50_A1VQF1 23S rRNA (uracil-5-)-methyltransferase rumA n=8 ... 236 8e-61 UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Achol... 235 2e-60 UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCM... 235 2e-60 UniRef50_C2L0H1 TrmA family RNA methyltransferase n=1 Tax=Oribac... 235 2e-60 UniRef50_Q1MXP1 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=B... 235 2e-60 UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Rosei... 235 2e-60 UniRef50_C4G0G8 Putative uncharacterized protein n=1 Tax=Abiotro... 234 3e-60 UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusob... 234 4e-60 UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780... 234 4e-60 UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2... 234 4e-60 UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firm... 234 5e-60 UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 233 8e-60 UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA ... 232 1e-59 UniRef50_A9WK13 RNA methyltransferase, TrmA family n=3 Tax=Chlor... 232 1e-59 UniRef50_Q5R111 SAM-dependent methyltransferase related to tRNA ... 232 1e-59 UniRef50_A4EB67 Putative uncharacterized protein n=3 Tax=Collins... 232 1e-59 UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=... 232 1e-59 UniRef50_B0S3A2 RNA methyltransferase n=2 Tax=Finegoldia magna R... 232 2e-59 UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=... 231 4e-59 UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n... 231 4e-59 Sequences not found previously or not previously below threshold: >UniRef50_A7MXY6 tRNA (uracil-5-)-methyltransferase n=78 Tax=Proteobacteria RepID=TRMA_VIBHB Length = 369 Score = 442 bits (1138), Expect = e-123, Method: Composition-based stats. Identities = 232/361 (64%), Positives = 289/361 (80%), Gaps = 2/361 (0%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQ 67 ++Y+ QLAEKV RL M AP++ EVF SP HYRMRAEFR+WH+G+DLY+I+F+Q+ Sbjct: 8 PQRYQEQLAEKVERLNDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK 127 T+ + RVD FPAAS LIN LM ++ +++N LR KLFQ+D+L+TLS + +VSLLYH++ Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 128 LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENS 187 LD+EW + A+AL+ L + N+++IGRA K KI LD+DY+ E+L V G+ IY+QVENS Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187 Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAA 247 FTQPN + +MLEWA+D T+ S GDLLELYCGNGNFSLALA+NFDRVLATE+AKPSV + Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247 Query: 248 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ--GIDLKSYQCETIFVDPPRSGL 305 AQYNIAAN IDNVQI+R++AEEFTQA+ G REF RLQ G+DLKSY C TIFVDPPRSG+ Sbjct: 248 AQYNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGM 307 Query: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 D +T KMVQ Y RI+YISCNPETL +NL+ L +TH V R ALFDQFPYTHHME GVLL Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLER 367 Query: 366 K 366 K Sbjct: 368 K 368 >UniRef50_A5F4M4 tRNA (uracil-5-)-methyltransferase n=202 Tax=Gammaproteobacteria RepID=TRMA_VIBC3 Length = 369 Score = 442 bits (1138), Expect = e-123, Method: Composition-based stats. Identities = 233/361 (64%), Positives = 294/361 (81%), Gaps = 2/361 (0%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQ 67 E Y+AQLA+K+ RL++M +S EVF SPV++YRMRAEFRIWH+GDD+Y+I+F+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK 127 T+ + RVD FPAAS LIN LM ++ ++ +P+LRHKLFQ+D+L+TLS + +VSLLYH++ Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 128 LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENS 187 L +EW A+AL+ L + N++LIGRA K K+ LD+DY+ E L V G+ +Y+QVENS Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENS 187 Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAA 247 FTQPNA + +MLEWA+D T+ SKGDLLELYCGNGNFSLALA+NF+RVLATE+AKPSV A Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 248 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ--GIDLKSYQCETIFVDPPRSGL 305 AQ+NIAAN I NVQIIRM+AEEFTQAM G REFNRL+ G+DL+SY+C TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307 Query: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 D +T KMVQ Y RILYISCNPETL +NL+ L +TH+V R ALFDQFPYTHHME GV+L Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 Query: 366 K 366 K Sbjct: 368 K 368 >UniRef50_A8GYV6 tRNA (uracil-5-)-methyltransferase n=12 Tax=Gammaproteobacteria RepID=TRMA_SHEPA Length = 365 Score = 432 bits (1112), Expect = e-120, Method: Composition-based stats. Identities = 215/361 (59%), Positives = 278/361 (77%), Gaps = 1/361 (0%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 + Y+ QL K V+L+ + A F E F S +HYRMRAEFR+WH+G+DLY+ +FD Sbjct: 6 MDPTTYDVQLEAKCVKLKQLFADFDTPELETFSSEPAHYRMRAEFRVWHEGEDLYYYMFD 65 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 ++ S++R D F ASELIN++M A++ ++ N +LRH+LFQID+L+TLS + +VSLLYH Sbjct: 66 KELNSKVRCDQFLPASELINKMMPALVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYH 125 Query: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 K+LD EW Q+A+ L+ L Q NV+LIGRA K KI D+D++ E L VAGK++ Y Q+E Sbjct: 126 KQLDSEWEQQAKILKQTLSTQ-FNVNLIGRARKQKIIFDKDFVVESLNVAGKQLQYHQIE 184 Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 NSFTQPN ++++MLEWA+D+TK S GDLLELYCGNGNFS+ALA+NF+RVLATE+AKPSV Sbjct: 185 NSFTQPNGKVSVKMLEWAIDITKNSSGDLLELYCGNGNFSIALAQNFERVLATELAKPSV 244 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 +AQYNI N ++N+QIIRM+AE+FT+AM R F RL+GIDL SY C TIFVDPPR+GL Sbjct: 245 ESAQYNIKVNQVENLQIIRMSAEDFTEAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGL 304 Query: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 D++T K+VQ Y RI+YISCNP TL NL LS+THK+ R ALFDQFPYT HME GV L Sbjct: 305 DADTVKLVQGYERIVYISCNPNTLIDNLAELSKTHKITRFALFDQFPYTDHMESGVFLEK 364 Query: 366 K 366 K Sbjct: 365 K 365 >UniRef50_A0KQR3 tRNA (uracil-5-)-methyltransferase n=93 Tax=Proteobacteria RepID=TRMA_AERHH Length = 377 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 234/360 (65%), Positives = 280/360 (77%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQ 66 Y+AQL EK RL + A F+ EV SP HYRMRAEFRIWHDGDDLYH ++ Sbjct: 16 TPADYQAQLDEKRERLCGLFADFTLPALEVHASPAEHYRMRAEFRIWHDGDDLYHCMYAP 75 Query: 67 QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHK 126 TK IRVD FP AS LINQLM ++ G+R +PVLR KLFQIDYL+T S Q VSLLYH+ Sbjct: 76 ATKEIIRVDQFPTASRLINQLMPVLLEGLRPHPVLRRKLFQIDYLSTQSGQICVSLLYHR 135 Query: 127 KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVEN 186 KL+ EW+Q AEAL+ LRA+ + LIGRA K KI L ++++ ERL V G++++Y+QVEN Sbjct: 136 KLESEWQQAAEALQADLRAKGFELQLIGRAHKQKICLGEEFVIERLTVQGRQLVYKQVEN 195 Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVA 246 SFTQPNAA+N QML WALDVTKGS+GDLLELYCGNGNFS+ALA+NF +VLATEIAKPSV Sbjct: 196 SFTQPNAAINEQMLGWALDVTKGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVD 255 Query: 247 AAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD 306 +AQ+NIAAN +DN+ I+RM+AEEFT AM G REFNRL+G+DL +YQC TIFVDPPR+GLD Sbjct: 256 SAQFNIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLGAYQCNTIFVDPPRAGLD 315 Query: 307 SETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 T K+VQ Y ILYISCNPETL N+ L +TH++ R ALFDQFP+THHME GV L K Sbjct: 316 DATVKLVQDYDNILYISCNPETLQANMAVLGETHEIARFALFDQFPWTHHMEAGVYLKRK 375 >UniRef50_A6W3C7 tRNA (uracil-5-)-methyltransferase n=9 Tax=Gammaproteobacteria RepID=TRMA_MARMS Length = 366 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 196/368 (53%), Positives = 255/368 (69%), Gaps = 6/368 (1%) Query: 1 MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 M P+ + E YE QL +K L +MA S EVF S +HYRMRAEFRIWHDGDDLY Sbjct: 1 MRPDQIQPEMYEKQLQDKQAELAKLMATLSLPEMEVFASQPTHYRMRAEFRIWHDGDDLY 60 Query: 61 HIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + +FD ++ IR D F AAS LIN+LM ++ VR+ PVLR+KLFQ+D+LTT + +A+ Sbjct: 61 YAMFDSADPRTPIRTDQFLAASRLINELMPKLLDAVRDVPVLRYKLFQVDFLTTTTGEAL 120 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 +SLLYHK +D EW + L +A A H IGR+ K K + +D++ E L V G++ Sbjct: 121 ISLLYHKPIDAEWNAAVQQLNNAFPA----CHFIGRSRKKKQIITRDFVMETLTVNGQKF 176 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATE 239 Y+QVENSFTQPNA ++ +MLEWALDVTK + GDLLE+YCGNGNFS+ LAR FDRV+ATE Sbjct: 177 HYQQVENSFTQPNAGISEKMLEWALDVTKEASGDLLEMYCGNGNFSIPLARRFDRVVATE 236 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR-LQGIDLKSYQCETIFV 298 I+K SV +AQ NIA N + NVQ+++MA+E+ + A+NG E + L + + V Sbjct: 237 ISKVSVNSAQLNIAINGMHNVQVVKMASEDVSAALNGDVELPKSLVQAGVSELTPSVVLV 296 Query: 299 DPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHME 358 DPPR+GLD T ++++ ILYISCNPETL NLE LS TH+V R A+FDQFPYTHH+E Sbjct: 297 DPPRAGLDDATVELIRKIDSILYISCNPETLKANLEALSNTHEVVRYAMFDQFPYTHHVE 356 Query: 359 CGVLLTAK 366 GV L K Sbjct: 357 TGVFLRRK 364 >UniRef50_A6QBC0 tRNA (uracil-5-)-methyltransferase n=4 Tax=Epsilonproteobacteria RepID=TRMA_SULNB Length = 371 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 161/363 (44%), Positives = 234/363 (64%), Gaps = 7/363 (1%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 L + Y QL K R+ +++PF E+F SP S YR RAEFRIWH+ + + + + Sbjct: 14 LYNQNYTQQLQLKEQRVSELLSPFYTGELELFDSPDSRYRARAEFRIWHESERCDYAMGN 73 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVR-NNPVLRHKLFQIDYLTTLSNQAVVSLLY 124 + K + ++ P E I + M ++ + + VL+ +LF +++L T +++ +V++LY Sbjct: 74 IEKKGAVTIEECPKVIEPIEKRMWKLLEKINASQEVLKQRLFAVEFLATTTDECLVTMLY 133 Query: 125 HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQV 184 H+KLD+ W +EA+ L L N ++GR+ K K+ L +++ E L + GKE Y Q Sbjct: 134 HRKLDEAWSEEAKMLEREL-----NCRVMGRSRKQKVILSDEFVTETLEIDGKEFTYVQY 188 Query: 185 ENSFTQPNAAMNIQMLEWAL-DVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKP 243 E+ FTQPN A+N++M+EWA+ K GD LE YCG GNF+L L+ FD VLATEI+K Sbjct: 189 ESGFTQPNPAVNVKMIEWAIWQAKKVGYGDFLESYCGLGNFTLPLSHYFDNVLATEISKR 248 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 S+ AA N N ++N+ R+A+EE T+A+NGVREF+RL+GIDLKSY T+ VDPPR+ Sbjct: 249 SIHAALQNCELNAVENITFARLASEEMTEALNGVREFSRLKGIDLKSYDFSTVLVDPPRA 308 Query: 304 GLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 GLD T +++ I+YISCNPETL ++LETL +TH V ALFDQFP+T H+E GV L Sbjct: 309 GLDEGTIELISNIDNIIYISCNPETLARDLETLIKTHTVMEAALFDQFPHTEHVESGVFL 368 Query: 364 TAK 366 K Sbjct: 369 QKK 371 >UniRef50_A4BHH3 TRNA (Uracil-5-)-methyltransferase n=1 Tax=Reinekea blandensis MED297 RepID=A4BHH3_9GAMM Length = 362 Score = 392 bits (1008), Expect = e-108, Method: Composition-based stats. Identities = 163/366 (44%), Positives = 242/366 (66%), Gaps = 7/366 (1%) Query: 2 TPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 P +QY+ QLA+K RL+ ++ + +F S +HYRMRAEFR WH+G+ Y+ Sbjct: 1 MPFPFAPDQYDRQLADKTDRLKVLLDAWDHPELNIFSSTSAHYRMRAEFRFWHEGERSYY 60 Query: 62 IIFDQQ-TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 +F + ++ + V FP A+EL N LMT + V +P LR++LFQ+++LTT S A++ Sbjct: 61 AMFRPEDRRTPVEVVDFPVATELCNDLMTKVRNAVHEDPELRNRLFQVEFLTTQSGDALI 120 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI 180 +L+YH++LD W + A ++ +IGRA K ++ LD+DY+ E L + G++ Sbjct: 121 TLIYHRQLDSNWEERARYWQE-----QWGYPVIGRARKLRLVLDRDYVTETLSILGRDFH 175 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATE 239 + Q ENSFTQPNA + QM++WA++ ++G + DLLELYCGNGNFS+ LA+NF RVL TE Sbjct: 176 FHQYENSFTQPNAGVCEQMIQWAVEHSQGRESADLLELYCGNGNFSIPLAQNFRRVLGTE 235 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 299 I++ SV +AQ NIA N +DNV I RMA+E+ ++A R + + Y +TI VD Sbjct: 236 ISRTSVKSAQENIALNQVDNVSIARMASEDLSKAWLHNEPNRRFREFRIDDYDFDTILVD 295 Query: 300 PPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMEC 359 PPR+GLD +T ++++ + RI+YISCNPE++ KN+E L +++ ALFDQFPYTHHME Sbjct: 296 PPRAGLDEDTVELLKKFRRIIYISCNPESMVKNIEALRGQYRMTATALFDQFPYTHHMEA 355 Query: 360 GVLLTA 365 GV+L Sbjct: 356 GVILER 361 >UniRef50_Q31JA4 tRNA (uracil-5-)-methyltransferase n=5 Tax=Proteobacteria RepID=TRMA_THICR Length = 374 Score = 376 bits (965), Expect = e-103, Method: Composition-based stats. Identities = 188/376 (50%), Positives = 239/376 (63%), Gaps = 21/376 (5%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIF 64 E Y Q AEK RL+ ++ + F S HYR RAEFR+WH+GD +I+F Sbjct: 4 QTYPETYAEQFAEKTHRLEQLLGDLPNFDA--FASEPEHYRARAEFRVWHEGDQTDYIMF 61 Query: 65 DQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLY 124 DQQ+K ++ + P A E I LM ++A + PVLR KLFQ+D+L TLS + +V+L+Y Sbjct: 62 DQQSKEKVAIHHCPMALESIATLMPKLMAHIVQTPVLRQKLFQVDFLATLSGEMLVTLIY 121 Query: 125 HKKL----------DDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPV 174 K L D W A ALR L H+IGRA K KI LD+DY+ E+L V Sbjct: 122 RKSLQTKTETGVENDVAWVDAANALRCELPIT----HIIGRARKQKICLDKDYVIEKLQV 177 Query: 175 AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT----KGSKGDLLELYCGNGNFSLALAR 230 + IY+Q+ENSFTQPNA M ML WA V + DL+ELYCGNG+FS+AL+ Sbjct: 178 DHQTFIYQQIENSFTQPNAEMAQNMLHWARKVAAKANPDQQNDLIELYCGNGHFSIALSD 237 Query: 231 NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 290 F RVLATEI+K SVA+AQ+NI AN +DNV +++MAAEE + A+ G F RL+ IDL + Sbjct: 238 QFHRVLATEISKTSVASAQFNIEANKVDNVTVVKMAAEEISAALQG-ETFFRLKDIDLSA 296 Query: 291 YQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQ 350 Y TIFVDPPRSGLD T +MV + I+YISCNPETL +LE + QTH+V ALFDQ Sbjct: 297 YAFNTIFVDPPRSGLDDLTRQMVTEFDYIIYISCNPETLAHDLEAIRQTHEVLETALFDQ 356 Query: 351 FPYTHHMECGVLLTAK 366 FPYTHH+E GV L K Sbjct: 357 FPYTHHIESGVFLKRK 372 >UniRef50_A5EXH9 tRNA (uracil-5-)-methyltransferase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=TRMA_DICNV Length = 361 Score = 373 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 171/363 (47%), Positives = 241/363 (66%), Gaps = 10/363 (2%) Query: 9 EQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQT 68 Y+ QL K +L +++ PFS ++ SP HYRMRAEFRIW D + L++ + Sbjct: 4 SNYQRQLFAKHQQLHALLRPFSAPKIRIYPSPEKHYRMRAEFRIWRDDEQLFYAMSRGGA 63 Query: 69 ---KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 ++ +R+ +FP A I++ M ++ +R +PVL HKL+++ +L +L + +VSL+YH Sbjct: 64 LTAQNIVRLHNFPPAYITIDRCMPLLLDALRADPVLHHKLYEVHFLASLRGELLVSLIYH 123 Query: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 + L DEW A+AL A+ ++ LIGR+ K KI L++D+I E L V G+ Y Q E Sbjct: 124 RALTDEWTAAAKAL-----AKRFHILLIGRSRKQKITLERDFILETLNVDGRAFHYHQYE 178 Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF+QPNA + +ML WA + GDLLELYCGNGNF+L LA +F RVLATEI+K S+ Sbjct: 179 QSFSQPNAYVCQKMLRWACAQAGENAGDLLELYCGNGNFTLPLASHFRRVLATEISKSSI 238 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ--GIDLKSYQCETIFVDPPRS 303 A Q NI N +N+ + R++AEEFTQA R+F RL+ GI+L YQ ET+FVDPPR+ Sbjct: 239 TALQENIFLNQTNNIAVARLSAEEFTQAWQKERDFYRLKQAGIELADYQFETVFVDPPRA 298 Query: 304 GLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 G+D T ++Q +P+I+YISCNP TL NL+TL+QTH++ ALFDQFP T H+ECGV+L Sbjct: 299 GIDDNTLFLLQKFPKIIYISCNPHTLAANLQTLTQTHELCAAALFDQFPDTPHIECGVVL 358 Query: 364 TAK 366 K Sbjct: 359 RKK 361 >UniRef50_A6DAM4 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAM4_9PROT Length = 363 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 141/358 (39%), Positives = 216/358 (60%), Gaps = 15/358 (4%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQ-- 67 YE QL K +L+ M + F EV H+R RAEFR+WH+GD Y+ + ++ Sbjct: 18 PYEEQLKMKKDKLKEMFSKFEIPEIEVIYDKDEHFRARAEFRVWHEGDKTYYAMRKRKEE 77 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK 127 + I ++ + I +LM +++ + N LR KL+++ +L+ + +V+L+YH+K Sbjct: 78 GRGVIPIEECKIVDKAIYELMPKLMSEIEKNQNLRLKLYEVHFLSNSKGEVIVTLIYHRK 137 Query: 128 LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENS 187 +D+ ++ + L+D + NV I R K D++Y+ E L + GK Y+ +EN+ Sbjct: 138 VDESIAEDIKRLKDKFK----NVDFIVRKKGRKYIFDKNYLIEELEIKGKTYKYKIIENT 193 Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAA 247 FTQPN +N +M+ W LD T KGDL+ELYCGNGNF++ L+ NF +V+ATEI S+ A Sbjct: 194 FTQPNREINKKMISWVLDNTSNLKGDLVELYCGNGNFTIPLSENFRKVVATEINPESIEA 253 Query: 248 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDS 307 A YN N+ N+ + M+A EF++ + FN SY + + +DPPR+GLD Sbjct: 254 ATYNAEINNRKNISFLAMSAAEFSE-LKKTGFFN--------SYDLKNVLIDPPRAGLDE 304 Query: 308 ETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 ++ K V + I+YISCNPETL ++LETLS+ K++ A FDQFPYT+HMECGV+L Sbjct: 305 KSRKFVNEFDNIIYISCNPETLKRDLETLSKNRKIKAFAFFDQFPYTNHMECGVVLER 362 >UniRef50_A8HPV8 tRNA (Uracil-5-)-methyltransferase (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8HPV8_CHLRE Length = 364 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 167/368 (45%), Positives = 235/368 (63%), Gaps = 13/368 (3%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 + E Y+ QL K+ +L+ + F EVF SP +HYRMR+EF + L+ Sbjct: 3 IDAEDYDGQLDRKLTKLKQLFQEFDPPQLEVFTSPPTHYRMRSEFTVEQRDGPLHFKGGK 62 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 + R+RVD+FP A++ +N+LM + P LR +LFQ+++ TTL+ A+V+LLYH Sbjct: 63 PKGPRRVRVDTFPVATKQVNELMAVVREEADKTPELRQRLFQVNFHTTLAGDAMVTLLYH 122 Query: 126 KKLDDEWRQEAEALRD------ALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 +KL EW+ AE LRD A + H+IGR+ K KI LD D++ ERL V G+ Sbjct: 123 RKLGPEWQAAAERLRDALAATPTAAAAGVRPHVIGRSRKQKIALDADFVLERLTVGGRTF 182 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATE 239 + +QVE SF+QPN + ML WA D DLLELYCGNGNF++ L+ NF RV+ATE Sbjct: 183 VQKQVEGSFSQPNGHVCQHMLTWAQD------DDLLELYCGNGNFTIPLSANFRRVVATE 236 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID-LKSYQCETIFV 298 +AK SV AA+YN+ AN + NV + RMA+EEF M RL+G++ ++ + TI V Sbjct: 237 VAKSSVEAARYNMEANGVSNVFLARMASEEFAVTMRERGSRRRLEGLEGWEALRLRTILV 296 Query: 299 DPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHME 358 DPPR+GLD T ++++ + RI+YISCNP+TLC NL+ ++ TH++ R A FDQFPYTHH+E Sbjct: 297 DPPRAGLDDFTVELLKEFDRIVYISCNPDTLCANLKAIAPTHRIARFAAFDQFPYTHHLE 356 Query: 359 CGVLLTAK 366 CGV L + Sbjct: 357 CGVYLVRR 364 >UniRef50_A4RUE5 Predicted protein n=8 Tax=cellular organisms RepID=A4RUE5_OSTLU Length = 418 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 168/375 (44%), Positives = 232/375 (61%), Gaps = 21/375 (5%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVP--EVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Y+ +L EK ++ + L E F S +RMRAEF++WHDGD Y + D Sbjct: 48 PSSYDEELREKTAHARAHFDGVATLPSRTETFESAREEFRMRAEFKVWHDGDRSYFAMCD 107 Query: 66 Q-QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLY 124 + K + V FP AS I +LM ++ V LR KLFQ ++LTT + AVVSLLY Sbjct: 108 SDRPKDPVEVVDFPMASARIRELMPELLREVTATETLRRKLFQANFLTTTTGDAVVSLLY 167 Query: 125 HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQV 184 H++LD++W +EAEA+R L + +IGRA K K+ L +D++ E++ + GKE Y+Q+ Sbjct: 168 HRQLDEDWEREAEAMRARL-----GIDVIGRARKQKLVLAKDFVTEKVLIDGKEFSYKQL 222 Query: 185 ENSFTQPNAAMNIQMLEWALDVTKGSKGDL-------------LELYCGNGNFSLALARN 231 E SFTQPNA + QML WA D+ LELYCGNG+F++ALA Sbjct: 223 EGSFTQPNAGIAAQMLAWARSAAVSDSPDVVAAATPRDANRDFLELYCGNGHFTIALAPL 282 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY 291 F + LATEI+K SVAAA N+AAN IDNV R++AEE A++G RE+ RL+ IDL +Y Sbjct: 283 FRKCLATEISKSSVAAAHVNMAANGIDNVVTARLSAEELCDALDGGREYTRLKDIDLTTY 342 Query: 292 QCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQF 351 T+ VDPPR+G+ E K + RI+YISCNPETL ++ + L +TH+++R A+FDQF Sbjct: 343 DLSTVLVDPPRAGMGDEVSKFCARFDRIIYISCNPETLARDCKILGETHEIKRFAVFDQF 402 Query: 352 PYTHHMECGVLLTAK 366 PYT H+E G LL + Sbjct: 403 PYTPHLESGALLVKR 417 >UniRef50_A8EWU8 tRNA (uracil-5-)-methyltransferase n=3 Tax=Campylobacterales RepID=TRMA_ARCB4 Length = 375 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 153/365 (41%), Positives = 242/365 (66%), Gaps = 11/365 (3%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDD-----LY 60 L + YE QL K+ R + + F+++ ++ +S S++R RAEFRIW + + L Sbjct: 14 LFDKTYEEQLNYKIQREKERFSNFTNIDFDIIKSNESNFRNRAEFRIWWEKGENNKEILS 73 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 + + D + K+ ++++S S I +LM +I ++N+ L KLF +++L + + +V Sbjct: 74 YAMNDFK-KNILKINSCEMVSFHIKELMPKLIDELQNDLELSFKLFAVEFLGSSTKDMLV 132 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI 180 +L+YHKKL++ W Q+A+ + + LN+ +IGR+ K ++ L DYI+E L ++ + Sbjct: 133 TLIYHKKLEESWIQKAKEIE-----KKLNIKIIGRSKKQRLVLTNDYINETLNISNQNFF 187 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEI 240 + EN FTQPN +N+QM+EW L+ TK S DL ELYCG GNF++ L+ F +VLATEI Sbjct: 188 FAYEENGFTQPNTNVNVQMIEWVLENTKNSSKDLCELYCGGGNFTIPLSTKFRKVLATEI 247 Query: 241 AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP 300 +K S+ +A N + N I+++ IRM+AE+F QA+N VR FNRL+ I+L Y+ +TIF+DP Sbjct: 248 SKTSIKSALRNCSLNKIESISFIRMSAEDFVQALNKVRAFNRLKDINLDDYEFDTIFMDP 307 Query: 301 PRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECG 360 PRSGLD T + + + I+YISCNPETL ++LE L++TH++E+ ALFDQF +T+H+E G Sbjct: 308 PRSGLDDTTRNLAKDFENIIYISCNPETLHRDLEELTKTHEIEKFALFDQFAFTNHIESG 367 Query: 361 VLLTA 365 V+L Sbjct: 368 VILRK 372 >UniRef50_B9LA97 tRNA (uracil-5-)-methyltransferase n=1 Tax=Nautilia profundicola AmH RepID=TRMA_NAUPA Length = 365 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 132/358 (36%), Positives = 216/358 (60%), Gaps = 13/358 (3%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQ-- 67 Y+ QL K +L+ M + F EV H+R RAEFR+WH+GD Y+ + ++ Sbjct: 18 PYDEQLKMKSEKLKEMFSEFDMPEIEVVHGSDEHFRARAEFRVWHEGDKSYYAMRKRKED 77 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK 127 + I ++ + I +MT ++ + N LR KL++ID+L+ + +++L+YHKK Sbjct: 78 GRGVIPIEECKIVDKAIYDIMTPLLKEIEKNDNLRFKLYEIDFLSNSKGELIITLIYHKK 137 Query: 128 LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENS 187 +D+ ++ + L++ + N I R K D++Y+ E L + K Y+ +EN+ Sbjct: 138 VDESIAEDIKKLKEKFK----NADFIVRKKGRKYVFDKNYLIEELNINSKTYKYKIIENT 193 Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAA 247 F+QPN MN +M+EWA+ ++ KGDL+ELYCGNGNF++ L+ F++V+ATEI+K S+ A Sbjct: 194 FSQPNRQMNQKMIEWAMRNSEDLKGDLVELYCGNGNFTIPLSERFNKVIATEISKESIEA 253 Query: 248 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDS 307 A YN N DN+ + M+A EF++ + + + Y + I +DPPR+GLD Sbjct: 254 ATYNAEINARDNITFLAMSAAEFSK-------LYKDRSPLITKYDLKNILIDPPRAGLDD 306 Query: 308 ETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 ++ + V + I+YISCNPETL ++L+TL++ +++ A FDQFPYT+H ECGV+L Sbjct: 307 KSREFVNEFDNIIYISCNPETLQRDLKTLAKGREIKAFAFFDQFPYTNHAECGVILKK 364 >UniRef50_C6RGK1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Campylobacter showae RM3277 RepID=C6RGK1_9PROT Length = 377 Score = 353 bits (907), Expect = 4e-96, Method: Composition-based stats. Identities = 138/361 (38%), Positives = 209/361 (57%), Gaps = 9/361 (2%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHD----GDDLYHIIFD 65 YE Q+ K ++ PF E F S + YR RAEF IWHD DL + + Sbjct: 20 PYEEQVKFKTDFIRREFEPFYSGEFEFFASQSAAYRTRAEFGIWHDIWHSAVDLAYTMHG 79 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 +TK RI +D P + I LM ++ + N +L+ +LF ++++ S + +LLYH Sbjct: 80 AKTK-RIMIDECPKVAAPIANLMPRLLEALAKNQILKERLFGAEFISCASG-ILATLLYH 137 Query: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 K+L + + E E+L AL+ +L V + RA K+ + + + L + GK + + Sbjct: 138 KRLGEAEQSEIESL--ALKFADLRVTIAARAKGQKLLSGELNLQDSLNIGGKIYKFTFGD 195 Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 +F QPN A+N +M+ WA + DLLELYCG+GNF++ ++ F RVLATEI+K S+ Sbjct: 196 GAFIQPNTAVNEKMIAWAKRCVE-RGADLLELYCGHGNFTVPMSEKFKRVLATEISKSSI 254 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 A A N N ++N++ +RM+AEE A REFNRL+ +D+ SY + VDPPR+GL Sbjct: 255 ANALKNCELNGVNNIEFLRMSAEELMSAFRREREFNRLRELDIFSYDFSHVLVDPPRAGL 314 Query: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 D ++ Y I+YISC+P++L ++L L+ TH+ + A+FDQF T H+ECGVLL Sbjct: 315 DESVINFIKNYENIIYISCSPQSLKRDLTQLAATHEAVKFAVFDQFANTTHIECGVLLKG 374 Query: 366 K 366 K Sbjct: 375 K 375 >UniRef50_C5EY89 tRNA (Uracil-5-)-methyltransferase n=3 Tax=Helicobacter RepID=C5EY89_9HELI Length = 369 Score = 349 bits (896), Expect = 8e-95, Method: Composition-based stats. Identities = 137/354 (38%), Positives = 219/354 (61%), Gaps = 7/354 (1%) Query: 12 EAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSR 71 E L K+ R +M+ F + EVF S +R R E I+H + + + + ++ + Sbjct: 17 EYSLESKIARASAMLG-FQNF--EVFGSQEVSFRARCELGIYHKENKIIYTM--RKGRQF 71 Query: 72 IRVDSFPAASELINQLMTAMIAGVRNN--PVLRHKLFQIDYLTTLSNQAVVSLLYHKKLD 129 + + + P + + + + + ++ R KLF I+ L+T + +++L+YHKKL+ Sbjct: 72 VPIQNCPILVDNLQAFLQVLKEVLNDDFFGDFREKLFAIEALSTQMDTILLTLIYHKKLN 131 Query: 130 DEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFT 189 D+W + A ++ L + + + ++GR+ KI +D+D++ E L V K YR E +F+ Sbjct: 132 DKWLEIARVFKEVLEKRGIKLEVVGRSRGVKIVVDKDFVIEELKVGKKGYFYRYDEGAFS 191 Query: 190 QPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQ 249 QPN +N +ML+WA+D K S DLLE+YCG GNF++ + F +VLATEI+K S+ AA+ Sbjct: 192 QPNPKVNEKMLKWAMDSLKRSDEDLLEMYCGCGNFTIPFSEKFRKVLATEISKTSIRAAK 251 Query: 250 YNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET 309 + N +N++ +R+ A+E +A+ GVREF RL+GI L+ Y ++FVDPPR+GL E Sbjct: 252 FACEKNQRNNIKFVRLNAQECIEALEGVREFRRLEGIRLQDYCFSSVFVDPPRAGLGEEV 311 Query: 310 EKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 + +Q + ILYISCNP TL K+LE L QTHK+ ++A FDQFP+T H+E GVLL Sbjct: 312 SRFLQRFQNILYISCNPSTLAKDLEILKQTHKISKVAFFDQFPHTPHLESGVLL 365 >UniRef50_C1E3C6 Predicted protein n=2 Tax=Micromonas RepID=C1E3C6_9CHLO Length = 459 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 172/394 (43%), Positives = 230/394 (58%), Gaps = 40/394 (10%) Query: 8 TEQYEAQLAEKVVRLQSMM------------------APFSDLVPEVFRSPVSHYRMRAE 49 + Y +L K+ R +S EV S S++RMRAE Sbjct: 69 PDTYREELDVKIERARSHFAAAPAPAPTPEVPHPKPLEEIHLPPTEVHESARSNFRMRAE 128 Query: 50 FRIWHDGDDLYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQI 108 FR+WHDGD Y +FD K+ I V SFP SE IN+LM A I + + V+R KLFQ+ Sbjct: 129 FRVWHDGDRSYLAMFDSDDPKTPIEVPSFPMGSEKINELMPAFIEEIGRSEVIRRKLFQV 188 Query: 109 DYLTTLSNQAVVSLLYHKKLD-DEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDY 167 ++LTT+ A++S+LYHK + DEW EAE +R Q L V +IGR+ K K+ L DY Sbjct: 189 NFLTTMKGDALISMLYHKPVKTDEWELEAEKMR-----QRLGVSIIGRSRKQKVVLGNDY 243 Query: 168 IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT--------------KGSKGD 213 + E + V G+ + Y+Q+E FTQPNA ++ +MLEWA D Sbjct: 244 VMEEIEVDGRVLTYKQLEGGFTQPNAGISAKMLEWARSAAVSDSADAVGEAAAPARRNDD 303 Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 LLELYCGNGNF++A+A F VLATE++K SVAAA+ N AN NV R+++EE T A Sbjct: 304 LLELYCGNGNFTIAMAPMFRAVLATEVSKVSVAAAKLNADANGAGNVAFARLSSEELTLA 363 Query: 274 MNGVREFNRLQGID-LKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKN 332 ++ ++F RL + L+SY T+ VDPPR+G+ E V + RI+YISCNPETL + Sbjct: 364 LDQGKQFARLDDVPPLESYDLRTVLVDPPRAGMGEEVSTFVSRFDRIVYISCNPETLAAD 423 Query: 333 LETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 + TL TH+V R A FDQFPYT H+ECG LL AK Sbjct: 424 VRTLRDTHEVARFAAFDQFPYTPHLECGALLIAK 457 >UniRef50_B9D5E5 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Campylobacter rectus RM3267 RepID=B9D5E5_WOLRE Length = 374 Score = 348 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 133/359 (37%), Positives = 204/359 (56%), Gaps = 5/359 (1%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQ 67 YE Q+ K ++ PF E F S + YR RAEF IW +G++L + + + Sbjct: 18 DAPYEEQVEFKKGFIRREFEPFYSGEFEFFASQKAGYRTRAEFGIWREGEELSYTMHGAK 77 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK 127 K R+ +D P + I LM ++ + N +L+ KLF ++++ S + +LLYHK Sbjct: 78 AK-RVFIDECPKVAAPIANLMPRLLGALVKNQILKEKLFGAEFISCASG-ILATLLYHKH 135 Query: 128 LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENS 187 L + E E+L V + RA K+ + + +RL + K + + + Sbjct: 136 LGKAEQGEIESLAREFVGH--RVTIAARAKGQKLLSGELNLQDRLNIGDKIYKFTFGDGA 193 Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAA 247 F QPN A+N +M+ WA + DLLELYCG+GNF++A+A F RVLATEI+K S+A Sbjct: 194 FIQPNTAVNEKMIAWAKGCVE-RGADLLELYCGHGNFTVAMAEKFKRVLATEISKSSIAN 252 Query: 248 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDS 307 A N N ++N++ +RM+AEE A REFNRL+ +D+ SY + VDPPR+GLD+ Sbjct: 253 ALKNCELNGVNNIKFLRMSAEELISAFGREREFNRLRELDIFSYDFSHVLVDPPRAGLDA 312 Query: 308 ETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++ Y I+YISC+P++L +++ L TH+ + A+FDQF T H+ECGVLL +K Sbjct: 313 SVINFIKNYENIVYISCSPQSLKRDMAQLDATHEAVKFAVFDQFANTAHIECGVLLRSK 371 >UniRef50_A4A8C7 tRNA (Uracil-5-)-methyltransferase n=4 Tax=Gammaproteobacteria RepID=A4A8C7_9GAMM Length = 373 Score = 344 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 223/362 (61%), Gaps = 8/362 (2%) Query: 1 MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 M P E Y A+K ++ M E F SPV YR+RAEFRIWHDGDD+ Sbjct: 1 MLPWQTDPENYATLFAKKCSDVEKDMLTLRLPPAERFASPVESYRVRAEFRIWHDGDDID 60 Query: 61 HIIFDQQ-TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 +++FD ++ + + F A I LM ++A +++ PVLR KLFQ +++ T + + + Sbjct: 61 YVMFDPGHPRTPVVIKDFAPALAPIRTLMPQLLAFLKSRPVLRRKLFQAEFMATTTGELL 120 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 ++L+YH+ LDD W EA AL A+ +V L+GR+ K K + +D++ + V G+ Sbjct: 121 LTLIYHRPLDDAWEDEARAL-----AREFDVSLVGRSRKQKRIIGRDFVVDAFTVDGRCY 175 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATE 239 YRQ E SF QPNA +N ML WA GDLLELYCGNGNF+L LA F V+ATE Sbjct: 176 RYRQYEQSFVQPNAPINEAMLTWAWQQGASCPGDLLELYCGNGNFTLPLASRFPAVIATE 235 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI--DLKSYQCETIF 297 ++K AA NI N +DNVQ+IR++AEE ++AM+GVREF RL + L Y T+F Sbjct: 236 LSKSGTRAALENIRDNGVDNVQVIRLSAEEVSEAMSGVREFRRLATLPKPLGDYDLRTVF 295 Query: 298 VDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHM 357 VDPPR+GLD T V+ + ILY+SCNP+TL N+E L+ +H V ALFDQFPYT H+ Sbjct: 296 VDPPRAGLDPGTLDCVRDFEAILYVSCNPKTLKSNIEALTDSHVVTHYALFDQFPYTPHI 355 Query: 358 EC 359 E Sbjct: 356 ES 357 >UniRef50_A0RPL1 tRNA (uracil-5-)-methyltransferase n=4 Tax=Campylobacter RepID=TRMA_CAMFF Length = 367 Score = 337 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 134/356 (37%), Positives = 207/356 (58%), Gaps = 9/356 (2%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTK 69 Y Q+ K ++ F + FRSP+S +R RAEF ++HD + L + + + Sbjct: 20 PYSEQIDFKKNFIKEHFKDFHNGEIIFFRSPISKFRSRAEFGLYHDDNSLSYTM-RRADG 78 Query: 70 SRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLD 129 +++D E I+ +M ++ ++ N L+ KLF ++++TT + ++ LLYHK Sbjct: 79 GYLKIDKCSIVDEKISVIMPVLLDLLKENQNLKAKLFGVEFITTRD-EILIILLYHKD-A 136 Query: 130 DEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFT 189 QE L+ L+ V LI R+ K+ ++E+L + GK Y + +F Sbjct: 137 STIIQELTWLQSKLK-----VGLIARSKGKKLVFGSSSLNEKLFINGKSYHYVFGDAAFI 191 Query: 190 QPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQ 249 QPN +N M+ W LD T K DLLELYCG+GNF++ L+ F++VLATEI+K S+ +A Sbjct: 192 QPNRNINENMISWVLDHTTDCK-DLLELYCGHGNFTIPLSFKFNKVLATEISKASINSAL 250 Query: 250 YNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET 309 N N +DN++ R++AEE +A R+F RLQ IDL+SY+ I VDPPR+G D Sbjct: 251 KNCELNGVDNIKFTRLSAEELMEAFLFKRDFRRLQDIDLRSYEFSHILVDPPRAGCDKSV 310 Query: 310 EKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 ++ Y I+YISCNP TL +NL+ L +TH V++ A+FDQF +T+H+EC V+L Sbjct: 311 LDFIRNYENIIYISCNPLTLKENLKLLCKTHSVDKFAIFDQFVHTNHIECAVVLKK 366 >UniRef50_C5ZX30 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Helicobacter canadensis MIT 98-5491 RepID=C5ZX30_9HELI Length = 370 Score = 336 bits (863), Expect = 5e-91, Method: Composition-based stats. Identities = 134/357 (37%), Positives = 217/357 (60%), Gaps = 11/357 (3%) Query: 12 EAQLAEKVVRLQSMMA-PFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKS 70 E L KV + ++ D+V S +R R E I+ D + + + ++ K Sbjct: 17 ECSLESKVDYAKQLLGINQCDIVSLRQDS----FRARCELGIFFKDDKINYAM--RKGKQ 70 Query: 71 RIRVDSFPAASELINQLMTAMIAGVRNNPV--LRHKLFQIDYLTTLSNQAVVSLLYHKKL 128 + +++ E + + + + + R KLF I+ L+T +++ +++L+YHKKL Sbjct: 71 FVCIENCCNLLESLQKFLPVLKKKLNQEFFKDFRQKLFAIEVLSTQNDEILLTLIYHKKL 130 Query: 129 DDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSF 188 ++ W + A+ L+ AL Q V +IGR+ K+ +++DY+ E+L + GK+ YR E +F Sbjct: 131 NETWLENAKELKKAL--QEFRVEIIGRSKGVKLIVEKDYVVEKLEIDGKKYYYRYDEGAF 188 Query: 189 TQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAA 248 TQPN +N +M+EW L SKGDLLE+YCG GNF++ L++ F +VLATEI+K S+ AA Sbjct: 189 TQPNPKINEKMIEWVLQNISQSKGDLLEMYCGCGNFTIPLSQKFRKVLATEISKVSIRAA 248 Query: 249 QYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSE 308 ++ N +N+ +R++ +E +A+ G+R+FNRL+ I+L+ Y I VDPPR GL E Sbjct: 249 KFACQRNGCNNITFVRLSGQECIEAIEGIRKFNRLEQINLEEYDFSMILVDPPRGGLGEE 308 Query: 309 TEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 + +Q + ILYISCNP +L K+L+ LSQTH++ + A FDQFP+T H+E G+LL Sbjct: 309 VCRFLQNFSSILYISCNPLSLAKDLKILSQTHRIVKAAFFDQFPHTSHLETGILLQK 365 >UniRef50_A1VZH5 tRNA (uracil-5-)-methyltransferase n=17 Tax=Campylobacteraceae RepID=TRMA_CAMJJ Length = 357 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 133/352 (37%), Positives = 204/352 (57%), Gaps = 8/352 (2%) Query: 15 LAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRV 74 L EK ++ F ++F S HYR RAE +H+ D L++ +FD ++K + + Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 75 DSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQ 134 + A E I M ++ +R + L+ KLF +++LTT + V+LLYHK ++D + Sbjct: 72 EYLDFADEKICAFMPKLLEYLRQDDKLKEKLFGVEFLTT-KQELSVTLLYHKNIED-IKS 129 Query: 135 EAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAA 194 E L + NL+++LI R+ K+ + + + L + +++ Y + F QPN A Sbjct: 130 NLENL-----SNNLHINLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184 Query: 195 MNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIA 253 +N +M+ W ++ K DLLELYCG GNF+LALA F +VLATEI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244 Query: 254 ANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV 313 N+ N+ R+++EE + A+ REF RL+ I L + + VDPPR+GLD ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 314 QAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 + Y I+YISCNP TL +NL+ LS TH+VE ALFDQF T H+ECGV L+ Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clostridium RepID=A3DG93_CLOTH Length = 453 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 87/388 (22%), Positives = 156/388 (40%), Gaps = 46/388 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L YEA L K ++ + L V +YR +A++ I D + Sbjct: 85 LQHMNYEASLRFKTNVVRESIRRIGGLENVVVHDTVGMEQPVNYRNKAQYPIGRYKDGIR 144 Query: 61 HIIFDQQTKSRIRVDSF-----------PAASELINQLMTAMIAGVRNNPVLRHKLFQID 109 + +++ I + E I + + + ++RH + ++ Sbjct: 145 AGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYIEKNNISTYDEITGEGLVRHIMTRVG 204 Query: 110 YLTTLSNQAVVSLLYH-------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIE 162 + T + +V L+ + KKL D +E ++ + N + + + Sbjct: 205 FKT---GEVMVVLVINGRNIPSQKKLVDRLVKEIPEIKSVVLNVNTKRTNVILGDENIVV 261 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGN 221 +D I + + E + SF Q N + ALD + + K + +LYCG Sbjct: 262 YGRDTITDYI----GEFKFNISPLSFFQVNPVQTEVLYRKALDYAQLTGKETVFDLYCGI 317 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G SL L++ R+ E+ + +V A N N ++N + I AE+ M Sbjct: 318 GTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVGEAEKVIPEMYE----- 372 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ- 338 K + + + VDPPR G D K + RI+Y+SCNP TL ++L+ L++ Sbjct: 373 -------KGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARDLKYLAEG 425 Query: 339 THKVERLALFDQFPYTHHMECGVLLTAK 366 +V + D FP+T+H+EC L+ K Sbjct: 426 GFEVREVQPVDMFPWTYHVECVALIEKK 453 >UniRef50_Q7U326 tRNA (uracil-5-)-methyltransferase n=2 Tax=Helicobacter RepID=TRMA_HELHP Length = 404 Score = 315 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 131/376 (34%), Positives = 202/376 (53%), Gaps = 18/376 (4%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWH---DGDDLYH 61 +L +++++ L K Q P + L EVF SP +R RAEFR H + L Sbjct: 27 NLTLQEFQSFLDTKSKNFQ---YPTNPLAIEVFASPQEGFRARAEFRFSHVFQNKSGLDF 83 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVS 121 + R+ + P + +M ++ + +L HKL+ + L++L N+ +++ Sbjct: 84 AMNAFGYNHRVPIKKCPILLPTLQDIMPLLLHYLNTYDLLNHKLYACNLLSSLQNEIIIT 143 Query: 122 LLYHKKLDDEWRQEAEALRDALR-AQNLNVHLIGRATKTKIELDQDYIDERLPVAG---- 176 L+YHK LD W A ++ L N N+H+IGR+ K L D I E L + Sbjct: 144 LIYHKSLDSHWESLALKIQKELEYTLNTNIHIIGRSKNHKHILSNDIICEHLTLFANTPK 203 Query: 177 -KEMIYRQVENSFTQPNAAMNIQMLEWALD-----VTKGSKGDLLELYCGNGNFSLALAR 230 + + + E+ F QPN +N QMLE+ + T + D+LELYCG+GNF++ LA Sbjct: 204 ERTYTFFKQESRFCQPNPFINTQMLEFIVSALSSIYTPQTPCDMLELYCGSGNFTIPLAS 263 Query: 231 NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 290 F + ATE+ K ++ Q N+A N+I+N+ R+ A E QA+ R F RL+ IDL + Sbjct: 264 IFRHIFATEVVKSAITLLQKNMAKNNIENIIPARLNAFESIQALRKERVFFRLKNIDLDA 323 Query: 291 YQCETIFVDPPRSGLD-SETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFD 349 + + + +DPPRSG+ E +Q + I+Y+SCNP TL +L LSQ+H V R LFD Sbjct: 324 FAFDCVLIDPPRSGVGEEEVLYFLQNFNTIIYVSCNPHTLLNDLRILSQSHYVMRFGLFD 383 Query: 350 QFPYTHHMECGVLLTA 365 QFP+T+H EC V+L Sbjct: 384 QFPHTYHRECIVILRK 399 >UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bacteria RepID=A9KR80_CLOPH Length = 468 Score = 315 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 93/394 (23%), Positives = 162/394 (41%), Gaps = 47/394 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 + YE QL K ++ + + + P V +YR +A+F + D Sbjct: 87 QIQQLSYEEQLRYKQNKVLNCLKRIGGIENPPMEPIVGMENPYYYRNKAQFPVGKRTDGE 146 Query: 60 YHIIFD-QQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQ 107 I F +T S I E L+ + ++ + ++RH L + Sbjct: 147 VVIGFYAGRTHSIIDTAKCHIGDESTEPLIACIRNFLKQENISIYDEESHQGLVRHILLR 206 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNL-------NVHLIGRATKTK 160 + + T + ++ ++ + K E + ++ L NL ++ L KT Sbjct: 207 VGFTT---KELMICVVINGK---ELPASDKLIKQILACPNLPKDFRVTSICLNKNTKKTN 260 Query: 161 IELDQDYIDERLPVAGKEMI----YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LL 215 + L ++ I P + I Y+ SF Q N ++ E ALD T + + + Sbjct: 261 VILGEEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQTKKLYELALDYTDLTGNELVW 320 Query: 216 ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN 275 +LYCG G SL LA+ V EI ++ A+ N N I+N + AAEE Sbjct: 321 DLYCGIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINNAEFFVGAAEEVLP--- 377 Query: 276 GVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNL 333 + + + I VDPPR G D + + RI+Y+SC+P TL ++L Sbjct: 378 ------KQYQLSGGKIYADVIVVDPPRKGCDESLLETIVAMEPKRIVYVSCDPATLARDL 431 Query: 334 ETL-SQTHKVERLALFDQFPYTHHMECGVLLTAK 366 + L + ++++ DQFP++ H+E LLT + Sbjct: 432 KYLIEHGYDLKKVRPVDQFPHSVHVESVTLLTRR 465 >UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=23 Tax=Firmicutes RepID=Y768_OCEIH Length = 459 Score = 313 bits (801), Expect = 9e-84, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 160/390 (41%), Gaps = 47/390 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y+ QL K ++ ++M + L P + SHYR + + + ++ Sbjct: 86 QLQHMSYDLQLQMKQGQVHNVMKKVAHLDQVPVHPILGMEEPSHYRNKVQIPVGEKNGEV 145 Query: 60 YHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPV-----------LRHKLFQ 107 + +++ + D+ E IN+++ + + LRH + + Sbjct: 146 IVGFYQKRSHRILQNQDTCHIQDEAINEVLPFTRQLMNKYGIQAYDEKSHRGQLRHIMVR 205 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQE-------AEALRDALRAQNLNVHLIGRATKTK 160 + + T V+ D +E +++ + Q NV L KTK Sbjct: 206 VGHYTKDIMIVFVTKTSKFPEKDRIIKELTEQFPQVKSIVQNVNDQRTNVVL---GKKTK 262 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYC 219 + ++YI +++ ++ + SF Q N + + AL+ K D+ ++ YC Sbjct: 263 VLWGENYIYDKI----GDLTFAISPKSFFQVNPVQTKVLYDKALEYANIDKDDVVIDAYC 318 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G+ SL LA+ +V E+ ++ A+ N N ++NV+ AE+ Sbjct: 319 GIGSISLFLAQKAKKVYGIEVVPEAIEDAKMNAEINGMNNVEFSVGQAEKVMPKWKE--- 375 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETL- 336 + + I VDPPR G D + + + RI+Y+SCNP TL ++L L Sbjct: 376 ---------QGLDPDVIVVDPPRKGCDVDFLEAMIAMKPKRIVYVSCNPSTLARDLRILE 426 Query: 337 SQTHKVERLALFDQFPYTHHMECGVLLTAK 366 + +++ D FP T+H+EC LT K Sbjct: 427 DGGFETKQVQPVDMFPSTNHVECVAELTLK 456 >UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCA6_9FIRM Length = 455 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 85/388 (21%), Positives = 154/388 (39%), Gaps = 45/388 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP----VSHYRMRAEFRIWHDGDDLY 60 L QYE QL K + + + V + YR +A+ + + + Sbjct: 87 QLQHLQYEEQLKLKQNIVSDTLKRIGGIDIPVLATMGMQDPWRYRNKAQVPVGLENGTVR 146 Query: 61 HIIFDQQTKSRIRVDSFPAASEL-----------INQLMTAMIAGVRNNPVLRHKLFQID 109 +++++ + I + + QL + + ++RH L + Sbjct: 147 AGFYEKRSHNIIDLKCCHIQHPANDNVVHTVRNILQQLSVPVYREREHKGLVRHILARTS 206 Query: 110 YLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIE------- 162 + T + +V+++ + + + ++ + L+D++ V I I Sbjct: 207 FTT---EEVLVAIVTNGRQLPKKQEVVQQLKDSIPNLCGIVQNINTRKGNTILGNEELTL 263 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGN 221 L + ++ E+L + + SF Q N + AL+ S + + +LYCG Sbjct: 264 LGRPWLREKL----GNLHFHVSARSFFQVNPLQTEVLYNKALEYANLSGTETVFDLYCGI 319 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G SL LAR +V+ E + +V A+ N N+I N + AE + Sbjct: 320 GTISLFLARKAAKVVGVESVEAAVHDARENANVNNIKNAEFHTGTAETVVPRLFK----- 374 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQ- 338 + Y + + VDPPR G D + + A RI+Y+SCNP TL ++L+ L Q Sbjct: 375 -------QGYHADVVVVDPPRKGCDEKLLATIAAMRPQRIVYVSCNPATLARDLKYLQQN 427 Query: 339 THKVERLALFDQFPYTHHMECGVLLTAK 366 + D FP+T H+E VLL K Sbjct: 428 GYNPIEAQPVDMFPHTSHVETVVLLERK 455 >UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=5 Tax=Cyanobacteria RepID=Y942_THEEB Length = 449 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 84/377 (22%), Positives = 153/377 (40%), Gaps = 42/377 (11%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVF-----RSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Y QLA K ++ +A L P+ F YR + + + + + Sbjct: 90 YATQLAAKEQLVKDAIARIGHLEPQAFLPILAAPNPFGYRNKVTYPLGRRHGAVVAGYYQ 149 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDY------LTTLSNQAV 119 + + + ++ P +N L+ A+ ++ P+ R + + + + + + + Sbjct: 150 KGSHHLVNLNQCPVQDPRLNPLLAALKQALQPWPIYREQTHEPGFRHLGLRIGQRTGEQL 209 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQ-----NLNVHLIGR--ATKTKIELDQDYIDERL 172 ++L+ L EAE + N N H+ R +T++ + Y+ E + Sbjct: 210 ITLVLAGPLPAGLAAEAEGWLQRFQGVIGVCVNFNHHVGNRIFGDETQVLAGRPYLWEEM 269 Query: 173 PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARN 231 + ++ +F Q N A Q++ D + + L++LYCG G SL LA Sbjct: 270 A----GVRFQIASTTFFQVNTAQAEQLVTTLRDWIAPTGQERLVDLYCGVGTLSLPLAGA 325 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY 291 V+ E+ SV A N N I+N + AEE+ + Sbjct: 326 VAEVIGVEVHSASVQQAIANAQHNGINNAHFVCAKAEEWLPRYD---------------Q 370 Query: 292 QCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLS--QTHKVERLAL 347 + + +DPPR G D + PR+LY+SC+P TL ++L L T+++ ++ Sbjct: 371 AVDVLILDPPRKGCDRAVLDAILHNCPPRLLYVSCHPATLARDLAHLCSTGTYQLAKIQP 430 Query: 348 FDQFPYTHHMECGVLLT 364 D FP T H+E LLT Sbjct: 431 LDMFPQTAHVETIALLT 447 >UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacilli RepID=C6CV49_PAESJ Length = 465 Score = 307 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 89/400 (22%), Positives = 154/400 (38%), Gaps = 57/400 (14%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV--------------PEVFRSPVSHYRMRAEF 50 L Y AQL K + + L P V + YR +A+ Sbjct: 85 QLQHMDYAAQLNWKRQHVVDALERIGKLQIAGEGEEASGITVHPTVGMNDPWRYRNKAQV 144 Query: 51 RIWHDGD--DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN----------- 97 + +L + + + I D + ++++ + A R Sbjct: 145 PVGASAGAGELIAGFYAKGSHRIIDTDQCHIQHDRNDEVVRIVKAIGRELGVSAYDEESG 204 Query: 98 NPVLRHKLFQIDYLTTLSNQAVVSLLYH-KKLD------DEWRQEAEALRDALRAQNLNV 150 +LRH + + ++ S + +V L+ + +KL + R ++ ++ N Sbjct: 205 KGLLRHVMTRTGFV---SGEIMVVLVTNGRKLPQAELWVERIRAALPEVKSIVQNVNTRD 261 Query: 151 HLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS 210 + +TK+ + I + L + + SF Q N + I++ A+D + + Sbjct: 262 TNVIFGDETKVLWGSEVIYDEL----DGIRFAISARSFYQVNPSQTIELYRTAVDYAQLT 317 Query: 211 -KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 269 K +++ YCG G SL LAR RV EI ++ A+ N N I N AE Sbjct: 318 GKESVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIEDAKRNAELNGISNASFEAGPAEV 377 Query: 270 FTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEK-MVQAYP-RILYISCNPE 327 + + I VDPPR G D +++ P R++Y+SCNP Sbjct: 378 VIPRWRE------------EGIIPDVIVVDPPRKGCDPALLDTILKMQPERVVYVSCNPS 425 Query: 328 TLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTAK 366 TL ++L TL +K + D FP+T H+EC V + K Sbjct: 426 TLARDLRTLEDGGYKTVEVTPVDMFPWTSHVECVVWMVRK 465 >UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clostridiales RepID=A9KRF2_CLOPH Length = 554 Score = 306 bits (785), Expect = 7e-82, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 154/383 (40%), Gaps = 44/383 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHII- 63 H YE QL K ++ +++ F + P + HYR + + D Sbjct: 188 HYLDLPYEEQLKIKQKQVSKLLSDFCKVHPILGMEHPYHYRNKVQAVFGRDAKGNIISGV 247 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQIDYLT 112 + + T I S + ++++ + +++ +LR+ L + + Sbjct: 248 YKEGTHQIIPTTSCLIEDKKADEIIGTIRGMLKSFKIKTYDEDSGYGLLRYVLVKRGF-- 305 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDA--------LRAQNLNVHLIGRATKTKIELD 164 S + +V L+ + + ALR A L N LI +T + Sbjct: 306 -TSGEIMVVLVIASPILPSKKNFVAALRKAHPEITTIVLNINNRTDSLILGDRET-VLYG 363 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGN 223 + YI++ L ++R SF Q N ++ + A+ + K +++ YCG G Sbjct: 364 KGYIEDTL----CGNVFRISSKSFYQVNPVQTERLYQLAIKAAGLTGKERVIDAYCGIGT 419 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 L ++N VL E+ K ++ A N N I N A EF AM Sbjct: 420 IGLVASKNAKEVLGVEVNKEAIKDAIANAKRNGITNEHFYNSDATEFMLAMAE------- 472 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETL-SQTH 340 K + + + +DPPR+G + V++ R++YISCNP TL ++L+ + + Sbjct: 473 -----KGEKADVVIMDPPRAGSTEQFIDAVESVQPSRVVYISCNPVTLQRDLKYFTKKGY 527 Query: 341 KVERLALFDQFPYTHHMECGVLL 363 +V+ D FP+T H+E LL Sbjct: 528 QVKEAWPVDMFPWTGHVETVCLL 550 >UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J6R9_DESRM Length = 457 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 87/394 (22%), Positives = 162/394 (41%), Gaps = 58/394 (14%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y+ QL K ++S + +++P + HYR + ++ + Sbjct: 85 QLQHLDYQEQLTYKRSVVESALFKIGGLKGVEVLPTLGMRNPWHYRNKIHLQV-KEAKGR 143 Query: 60 YHIIFDQQTKSRIRV----DSFPAASELINQLMTAM-----------IAGVRNNPVLRHK 104 + F + + S + INQ++ + +LRH Sbjct: 144 IKLGFYAEGSYELAAGLAGQSCLLVQKEINQVIAILEELINSYKLTPYHWGEKRGLLRHV 203 Query: 105 LFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAE----------ALRDALRAQNLNVHLIG 154 + + + S Q +V L+ +EW+ E + +R N N I Sbjct: 204 MIRQGFH---SGQCMVVLVTS---PEEWQAENAFSRALVARQPKIVSVIRNINRNPGRIV 257 Query: 155 RATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD- 213 + ++ ++YI + L + + NSF Q N ++ + A + + + Sbjct: 258 LGEENRVMYGKEYIVDEL----NGLNFNISANSFYQVNTLQTEELYQKAKEFAQLQGHER 313 Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 +++ YCG G +L LAR+ V+ EI P+VA A+ N N I N + + A E+ Sbjct: 314 VIDAYCGIGTIALYLARSTVEVVGMEIVPPAVADAKENARLNGITNTKFFQGAVEKLLPR 373 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCK 331 M K + + + +DPPR G + E + PRI+Y+SC+P TL + Sbjct: 374 MA-------------KDLKPDVVVLDPPRKGCEKEVLTAISESKVPRIVYVSCDPATLAR 420 Query: 332 NLETLSQ-THKVERLALFDQFPYTHHMECGVLLT 364 +L L + ++ ++ D FP+T+H+EC VL++ Sbjct: 421 DLGVLDKLGYQTLQVQPVDMFPWTYHVECVVLMS 454 >UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXJ3_9BACL Length = 446 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 173/387 (44%), Gaps = 45/387 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMM-----APFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 +L YE QL K ++Q++M + +++ + HYR ++ + ++ Sbjct: 77 NLVHMNYEEQLKFKKKKVQNVMDKALGKDYIEVLDTLGMEDGYHYRNKSVIPVQKVNGEV 136 Query: 60 YHIIFDQQTKSRIRVDSFPA-----------ASELINQLMTAMIAGVRNNPVLRHKLFQI 108 + ++ + ++ LI++L ++ ++ +RH +F+ Sbjct: 137 KMGYYKPRSHDVVNIEKCFIQYDEHNVLMNKLRSLISELNLSVYDENSHSGAIRHIMFRT 196 Query: 109 DYLTTLSNQAVVSLLYHKKLD--DEWRQEAEALRDALRAQNLNVH----LIGRATKTKIE 162 + TL ++ +V ++ +K + DE+ ++ L D + + LN++ + KT+ Sbjct: 197 N---TLKSEIMVGIVAKEKFNKLDEFVEKISKLDDRIVSIMLNINDKKTNVIFGDKTENL 253 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGN 221 +DYI + L + ++ SF Q N + AL++ + + D +++ YCG Sbjct: 254 FGKDYITDTL----DGIDFKISLRSFYQVNPVQTEVLYSKALELAELKETDTIIDAYCGI 309 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G SL A+ +V EI + +V A N N+I NV+ + +E+ + + Sbjct: 310 GTISLFAAKKVKKVYGIEIVEAAVLDACENAKNNNITNVEFLLGKSEDVIKKLIS----- 364 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETLSQ- 338 + + + + VDPPR G + + +I+Y+SCNP TL +++E + Sbjct: 365 -------QDVKLDAVIVDPPRKGCEESFLRDLAAMDIEKIVYVSCNPATLARDMEIMRGL 417 Query: 339 THKVERLALFDQFPYTHHMECGVLLTA 365 +K+ + D FP T+H+E VLL+ Sbjct: 418 GYKLGSVQPVDMFPGTYHVETVVLLSK 444 >UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n=176 Tax=Firmicutes RepID=Y363_BACC1 Length = 460 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 86/385 (22%), Positives = 155/385 (40%), Gaps = 40/385 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L YE QL K +++ +M + P + YR +A+ I L Sbjct: 89 QLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREGGL 148 Query: 60 YHIIFDQQTKSRIRVDSFPAASE----LINQLMT-------AMIAGVRNNPVLRHKLFQI 108 + Q T I ++S +E LI ++ + RN LRH + + Sbjct: 149 VAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMARY 208 Query: 109 DYLTTLSNQAVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELD 164 +T ++ L K + +E + ++ ++ N + KT + Sbjct: 209 GQVTGEIMLVFITRTAELPNKKAIIEEIATKFPEVKSIVQNVNPKRTNVIFGDKTTVLYG 268 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGN 223 +YI + + ++ + SF Q N + + L+ K + +++ YCG G+ Sbjct: 269 SEYIYDFI----GDIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCGIGS 324 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 SL LA+ +V EI ++ A+ N A N++ N + AE Sbjct: 325 ISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWYK------- 377 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-TH 340 + +T+ VDPPR G D + R++Y+SCNP TL ++L+ L + + Sbjct: 378 -----EGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEEGGY 432 Query: 341 KVERLALFDQFPYTHHMECGVLLTA 365 K + + D FP+T H+EC VL++ Sbjct: 433 KTQEVQPVDMFPHTTHVECVVLMSR 457 >UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI04_EUBR3 Length = 493 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 92/416 (22%), Positives = 161/416 (38%), Gaps = 61/416 (14%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS---------DLVPEVFRSPVSHYRMRAEFRIWHD 55 + YE QL K ++++ + + P V YR +A+F + +D Sbjct: 81 QIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGTDNPYRYRNKAQFPVGYD 140 Query: 56 GDDLYHIIFDQ-QTKSRIRVDSF-----------PAASELINQLMTAMIAGVRNNPVLRH 103 D F ++ + I V+ E +N+ + ++RH Sbjct: 141 RDGNIVTGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLVRH 200 Query: 104 KLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQE---AEALRDAL-------------RAQN 147 L + + S Q +V L+ + + R+ A+ L + L +N Sbjct: 201 VLIRYGF---TSKQIMVCLVINGDSLEAKRRAGNAADILCERLSKIDGMTSISYNINKEN 257 Query: 148 LNVHLIGRATKTKIELDQDYIDERLPV--------AGKEMIYRQVENSFTQPNAAMNIQM 199 NV L KT + YI++ + + G + Y+ SF Q N ++ Sbjct: 258 TNVIL---GKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKL 314 Query: 200 LEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHID 258 AL + + + +LYCG G SL L++ +V EI ++ A+ N N I Sbjct: 315 YSTALAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDAKNNAKLNGIT 374 Query: 259 NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS------YQCETIFVDPPRSGLDSETEK- 311 N Q AE+ + D S + + I VDPPR G D + Sbjct: 375 NAQFFVGKAEDVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVVDPPRKGCDEKCLDT 434 Query: 312 -MVQAYPRILYISCNPETLCKNLETLS-QTHKVERLALFDQFPYTHHMECGVLLTA 365 + + RI+Y+SC+ TL ++L+ L + +++ + FDQF +T H+E LL Sbjct: 435 MLAMSPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490 >UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clostridiales RepID=D2RLZ0_ACIFE Length = 458 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 150/387 (38%), Gaps = 41/387 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y AQLA K + M + + HYR + + + Sbjct: 88 QLQHLSYPAQLALKRQTVVDAMERIGHFTKLSVQETLGAEDPWHYRNKMQVPAAQGRNHT 147 Query: 60 YHII-FDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQ 107 I + Q T I V + N+++ + + + ++RH + + Sbjct: 148 LAIGCYAQGTHRVIDVKDCLIQQQANNRIVQVVRSWMEKYRIPALEEDARRGIVRHIMGR 207 Query: 108 IDYLTTLSNQAVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL 163 + T +V+ + + K L RQE ++ N + K K+ Sbjct: 208 VGVQTGEVMAVLVTNEPQVPHLKDLTALLRQEIPGFTTLVQNLNTRHTNVIMGPKNKVIW 267 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNG 222 I +RL + + +SF Q N ++ E AL + K +++ YCG G Sbjct: 268 GPGVIHDRL----GKFTFTISPHSFFQVNTLQAEKLYETALQYAALTGKEKVIDAYCGTG 323 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 +L LA+ R L EI +P++ A+ N N + NV + A + Sbjct: 324 TITLFLAQKAKRALGIEIVEPAIRDARQNARDNQVSNVDFLCGDAAK------------E 371 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLS-QT 339 + + + + + + +DPPR+G + + + R++Y+SCNP +L ++ L + Sbjct: 372 MPELVRQGSRPDVVVLDPPRAGCEQRVLEAIAKVRPQRVVYVSCNPASLARDAAILRDKG 431 Query: 340 HKVERLALFDQFPYTHHMECGVLLTAK 366 V ++ D FP+T H+E LLT + Sbjct: 432 FVVRKVQPVDMFPHTSHVETVCLLTLR 458 >UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FXL7_9FIRM Length = 499 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 93/394 (23%), Positives = 160/394 (40%), Gaps = 50/394 (12%) Query: 1 MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSD------LVPEVFRSPVSHYRMRAEFRIWH 54 MT +H+ Y AQL K ++ + + + P YR +A+ + Sbjct: 127 MTLQHMA---YPAQLKAKQALVKQVFSRLGKFPESLEVRPTYGMDHPWQYRNKAQIPVRT 183 Query: 55 DGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRH 103 L F + + + V++F I+Q + +R +RH Sbjct: 184 VKGQLETGFFRKNSHQLVPVENFHIQDPAIDQAILVTRDILRQLGYSAYDEESRKGQIRH 243 Query: 104 KLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDA---LRAQNLNVHLIGR----A 156 + + + S Q ++ L+ + K + +AL A L + LN H Sbjct: 244 IIVKRGH---YSGQVMLILVVNGKGLPAEDKLIKALTKAIPNLVSLVLNSHTQANNVIMG 300 Query: 157 TKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LL 215 ++ Q +++ + + +SF Q N + +AL+ S + +L Sbjct: 301 PTNRLLWGQPVYQDQM----LGLDFSISPHSFYQVNTPQAEALYRYALEAADLSGSETVL 356 Query: 216 ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN 275 + YCG G SLALAR +V A EI ++ A+ N AN + NV AEE A Sbjct: 357 DAYCGIGTISLALARQAGQVYAMEIVPEAIDMARANAEANGLSNVTFQAGKAEEVLPAWQ 416 Query: 276 GVREFNRLQGIDLKSYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNL 333 + + VDPPR GLD E + +++ P +I+Y+SCNP T ++ Sbjct: 417 A------------EGIHFDVAVVDPPRKGLDPEFVKTLIELAPDKIVYVSCNPATCARDC 464 Query: 334 ETLSQ-THKVERLALFDQFPYTHHMECGVLLTAK 366 + L+Q ++++ + D FP T H+E LL K Sbjct: 465 QLLAQAGYELQWVQPVDLFPKTAHIEVVGLLERK 498 >UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=64 Tax=Staphylococcus RepID=Y1582_STAES Length = 456 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 80/390 (20%), Positives = 153/390 (39%), Gaps = 48/390 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRS-----PVSHYRMRAEFRIWHDG-DD 58 L Y AQL K ++ ++ V + YR +++ + + Sbjct: 84 QLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVNPWRYRNKSQIPVGQSNSNQ 143 Query: 59 LYHIIFDQQTKSRIRVDSFPAASEL-----------INQLMTAMIAGVRNNPVLRHKLFQ 107 + + Q++ I +DS +N+L ++ ++RH + + Sbjct: 144 VIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLVVR 203 Query: 108 IDYLTTLSNQAVVS--------LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKT 159 Y T V+ L KL E+ +++ + + NV ++GR + T Sbjct: 204 TGYHTDEMMVIFVTNGATFKQSELLVNKLKKEF-PNITSIKQNINNSHSNV-IMGRQSMT 261 Query: 160 KIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELY 218 +D I+++L E+ Y + SF Q N++ ++ + AL+ + + + +L+ Y Sbjct: 262 --LYGKDKIEDQLS----EVTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTY 315 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 CG G L +A V E+ ++ A+ N N + N AE+ Sbjct: 316 CGIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS-- 373 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETL 336 + + + + VDPPR G D + RI+YISCNP T ++ + L Sbjct: 374 ----------QGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQIL 423 Query: 337 SQTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++ +++ + D FP T H+E L K Sbjct: 424 AEQYELVEITPVDMFPQTTHIETVALFVRK 453 >UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDX4_CLOTS Length = 452 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 85/386 (22%), Positives = 164/386 (42%), Gaps = 45/386 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVF----RSPVSHYRMRAEFRIWHDGDDLYH 61 L Y+ QL K + ++ + V+ +YR +AE+ + + ++ Sbjct: 85 LQHLSYKGQLEFKKQVVDDSLSRIGKINTIVYDTIGMDNPLYYRDKAEYPVGIEDGNIKS 144 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQIDY 110 + ++ + I +DS S+ + M + N N +LR+ + ++ + Sbjct: 145 GFYASKSHNIIAIDSCMIQSDYSIEAMKTVREWANNYKISIFDEKSGNGLLRYIITKVGF 204 Query: 111 LTTLSNQAVVSLL-------YHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL 163 T + +V L+ Y +L + ++ + L+ + N + + ++ + Sbjct: 205 ST---KEVMVILVINGIDIPYKDELINTLKKNIKELKSVVLNINKSRSRLVMGSENIVIY 261 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNG 222 YI + + + + SF Q N + E AL+ + ++++YCG G Sbjct: 262 GDGYITDYI----GDKKFEISPLSFFQVNPIQTKVLYEKALEYADLKGDEIVIDVYCGIG 317 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 S+ A+ V E+ +V A+ N A N I+N I AE + + Sbjct: 318 TISIFFAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFIAGKAEHVMKRLYK------ 371 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNLETLSQ-T 339 + + I +DPPR GLD + ++ V+ P +I+YISCNP TL ++L Sbjct: 372 ------EGLMPDIIILDPPRRGLDKDVVDECVKMNPQKIIYISCNPTTLARDLRIFEDNG 425 Query: 340 HKVERLALFDQFPYTHHMECGVLLTA 365 +K E++ D FPYT+H+EC VL++ Sbjct: 426 YKTEKVQPVDMFPYTYHVECVVLMSR 451 >UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1776 n=56 Tax=Firmicutes RepID=Y1776_LISMF Length = 453 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 148/380 (38%), Gaps = 38/380 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV----FRSPVSHYRMRAEFRIWHDGDDLYH 61 L Y+ QL K +++ M L EV YR +++ + L Sbjct: 87 LQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGKLTA 146 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-----------LRHKLFQIDY 110 + +++ + I + + +E + + + +RH + + + Sbjct: 147 GFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTRFAH 206 Query: 111 LTTLSNQAVVSLLYHKKLDDEW-RQEAEALRDALRAQNLNVH--LIGRATKTKIELDQDY 167 T +V+ +E R+ E L QN+N H + +TK +D Sbjct: 207 TTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWGKDI 266 Query: 168 IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSL 226 I++ + + + SF Q N + + A+D + + + +++ YCG G+ SL Sbjct: 267 IEDTI----HGIRFAISARSFYQVNPIQTEVLYQQAIDAAELTGEETVIDAYCGIGSISL 322 Query: 227 ALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286 LA+ V EI ++ A+ N N + N AEE A Sbjct: 323 CLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKA--------- 373 Query: 287 DLKSYQCETIFVDPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETLS-QTHKVE 343 + + VDPPR G D + + + +++Y+SCNP TL ++++ L+ + + Sbjct: 374 ---GIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGYVAK 430 Query: 344 RLALFDQFPYTHHMECGVLL 363 ++ D FP T H+E +L Sbjct: 431 KVQPVDMFPMTTHIEAVTVL 450 >UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1I4_HALOH Length = 453 Score = 298 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 92/387 (23%), Positives = 154/387 (39%), Gaps = 45/387 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVP----EVFRS-PVSHYRMRAEFRIWHDGDDL 59 HL Y QL K ++ + EV + YR +A+F + D + Sbjct: 82 HLQQMDYSLQLLHKQKIVKDTLERIGGFEEVRVNEVIGADHPWIYRNKAQFPLGSDNEGR 141 Query: 60 YHIIFDQQ-TKSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQ 107 F Q+ T + LIN++ I+ + N +LRH + + Sbjct: 142 VITGFYQKGTHQVVPHRQCVIQHPLINRIARKTISILNNYDLTVYDEKTHTGLLRHLVVR 201 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEAL-------RDALRAQNLNVHLIGRATKTK 160 + T NQA++ + K E ++ A L + L+ N + KT Sbjct: 202 VGICT---NQALLIFVTRDKKFKELQEIARKLMTEIPELKGVLQNINPRRTNVIMGDKTL 258 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYC 219 + DY + + + Y +SF Q N ++ S + +++ YC Sbjct: 259 LIKGNDYYIDYI----GSIRYAISPHSFFQVNTLQTERLYNTVRKYAGLSGQETVVDAYC 314 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G+ + LA V E+ ++ A+ N A N I+N I+ E+ + Sbjct: 315 GAGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKGKVEDKLPEL----- 369 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLS 337 +D K + + I DPPR GLD ET V P+I+Y+SCNP TL ++L+ + Sbjct: 370 ------VDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPATLARDLKEIK 423 Query: 338 QTHKVERLALFDQFPYTHHMECGVLLT 364 + + + D FP T+H+EC V L Sbjct: 424 ACYDINEVQPVDLFPQTYHVECVVKLE 450 >UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8Z2_9FIRM Length = 455 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 81/380 (21%), Positives = 162/380 (42%), Gaps = 37/380 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVF----RSPVSHYRMRAEFRIWHDGDDLY 60 L Y QL K ++ +M + + EV + YR + + + + Sbjct: 95 QLQHVSYAEQLRFKKQKVIDVMKRIAQIDVEVLDVIGMENPTFYRNKGQIPVGITNKQVV 154 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQL---MTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + + + I ++S S+ IN++ M ++ +N + RH L + + S + Sbjct: 155 TGFYRINSNTIIDMNSCMIQSKRINEVLVCMKKLLNKYQNADLFRHLLIKDAF---ASGE 211 Query: 118 AVVS-LLYHKKLD------DEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDE 170 +V ++ KL E + ++ + N + + + YI + Sbjct: 212 VMVVWIVRSSKLSHKEEMCKELVENLPYIKSVIINVNTREDNVILGKEEHVLYGNSYITD 271 Query: 171 RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALA 229 + ++ + SF Q N ++ AL+ + S K ++++LYCG G S+ LA Sbjct: 272 AI----HDLNFHISSRSFYQVNPVQTERLYGKALEFAQLSGKEEVIDLYCGVGTISMFLA 327 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 + V+ EI ++ A+ N N IDN+ + A + + + + + Sbjct: 328 QKAKHVIGVEIVDAAIRDAKINAKLNQIDNIDFVCSDAASYAKKL------------EKQ 375 Query: 290 SYQCETIFVDPPRSGLDSETEK-MVQAYP-RILYISCNPETLCKNLETLSQ-THKVERLA 346 + + + VDPPR G D T +V+ P RI+Y+SC+P TL ++++ L + + + + Sbjct: 376 GKKPDVVVVDPPRKGCDDLTLDSIVKMQPKRIVYVSCDPATLARDIKKLDEKGYAAQVVQ 435 Query: 347 LFDQFPYTHHMECGVLLTAK 366 D FP++ H+E VLL + Sbjct: 436 PVDMFPFSFHVESIVLLQKR 455 >UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veillonellaceae RepID=D1BLZ0_VEIPT Length = 457 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 146/385 (37%), Gaps = 42/385 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L YE QL+ K +++ ++ + + P + YR + + + D+ Sbjct: 86 QLQHITYEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYRNKMQMPVGGTKGDI 145 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQI 108 + + ++ + P E N + A + VLRH + +I Sbjct: 146 QMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKEFDIEPYDEHTGKGVLRHVIGRI 205 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVH----LIGRATKTKIELD 164 + +V+ H ++W ++ + NV+ + K + Sbjct: 206 G--QSGWMIILVTATEHLPHQEKWVEKLTERVPQVETIVHNVNGKRTNVILGPKNSVLYG 263 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGN 223 I + + K++ + +SF Q N + + AL + +++ YCG G Sbjct: 264 DGTITDHI----KDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTEIVIDAYCGTGT 319 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 SL LA V+ EI +P++ A+ N N DN + I A + Sbjct: 320 ISLFLAYKAKHVIGIEIVEPAITNARENARRNGYDNTEFIVADAA------------VEI 367 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETE--KMVQAYPRILYISCNPETLCKNLETLSQ-TH 340 + + + I DP R+G E RI+Y+SCNP T+ +++E L+ + Sbjct: 368 PKLYKAGVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTHYGY 427 Query: 341 KVERLALFDQFPYTHHMECGVLLTA 365 +++ + D FP T H+E LLT Sbjct: 428 ELKEVQPVDMFPMTAHVEAVALLTR 452 >UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostridiales RepID=A8RH83_9CLOT Length = 553 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 154/384 (40%), Gaps = 42/384 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDD-LYHII 63 L +Y QLA K + + ++ + P + HYR + D + I Sbjct: 186 QLLDMEYAKQLAFKQKQAEELLKGLCPVKPIIGMKDPFHYRNKVHAVFDRDKKGNIISGI 245 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQIDYLT 112 +++ T I V+ ++ ++++ + +++ +LRH L + + T Sbjct: 246 YEENTHHVIPVEKCLIENQKADEIIGTIRGMLKSFKIRTYDEDTGFGLLRHVLIRKGFST 305 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRD-ALRAQNLNVHLIGRAT------KTKIELDQ 165 + +V L+ + +ALR+ + ++ GR T K + + Sbjct: 306 ---GEIMVVLVTASPVFPSKNNFVKALREKHPEITTIVQNINGRGTSMVLGDKEHVLYGK 362 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNF 224 YI + L +R SF Q N + E AL + + + +++ YCG G Sbjct: 363 GYIVDEL----CGCRFRISSKSFYQVNPVQTEILYEKALSLAGLTGQELVVDAYCGIGTI 418 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 + ++ +V+ E+ + +V A N N I+N++ A F M E Sbjct: 419 GIIASKAAGKVIGVELNQDAVRDAVNNAKMNGIENIRFYCNDAGRFLVNMAEQGE----- 473 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ-THK 341 + + + +DPPRSG E V +++Y+SCNPETL +++ + + ++ Sbjct: 474 -------KADVVIMDPPRSGSTEEFMDAVGKLGAEKVVYVSCNPETLARDVRYMKKMGYR 526 Query: 342 VERLALFDQFPYTHHMECGVLLTA 365 L D FP T H E VLL Sbjct: 527 AAEAWLVDMFPGTVHTESIVLLQK 550 >UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDP0_9FIRM Length = 453 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 156/379 (41%), Gaps = 36/379 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFR----SPVSHYRMRAEFRIWHDGDDLY 60 L + E Q K R+ L EV +YR + + + + D Sbjct: 91 QLQIMEAELQAEFKRHRVADCFQRIGHLDVEVQPVLSMEFPWNYRNKVQVPVGVNRDGKV 150 Query: 61 HIIFDQ-QTKSRIRVDSFPAASELINQLMTAMIAGVRNNP---VLRHKLFQIDYLTTLSN 116 + + + + D SEL NQ++ ++ + + LRH L + + T Sbjct: 151 ISGYYRSHSHDIVDFDECCLHSELENQILRSLRSWIEEAGDPAQLRHLLIKHAFKTGQVM 210 Query: 117 QAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR------ATKTKIELDQDYIDE 170 +++ + K DE + A +R+ LNV+ GR + + I+E Sbjct: 211 VVLIAKSENLKGKDELIERLTAAYPQIRSIILNVN--GREDNVILGDREIVLWGSASIEE 268 Query: 171 RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALA 229 L + ++ SF Q N + A+++ + + ++++YCG G L+ A Sbjct: 269 EL----LGLRFQISAKSFYQINPVQTEVLYTKAIELAGLTGEETVIDVYCGTGTIGLSAA 324 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 R RV+ EI +V A+ N N I N + I A T + R Sbjct: 325 RKAKRVIGIEIVPSAVEDAKRNAVRNGIANAEFICGDAGVCTAQLLERR----------- 373 Query: 290 SYQCETIFVDPPRSGLDSETEK-MVQAYP-RILYISCNPETLCKNLETLSQ-THKVERLA 346 Q + VDPPR GLD T +V+ P RI+Y+SC+P TL ++ L++ + VE + Sbjct: 374 -IQPDVAIVDPPRKGLDGTTIDSLVKMNPERIVYVSCDPATLARDCAVLNERGYGVEVVQ 432 Query: 347 LFDQFPYTHHMECGVLLTA 365 D FP T H+E VL++ Sbjct: 433 PVDMFPQTTHVETVVLMSK 451 >UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVD9_9CLOT Length = 460 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 154/388 (39%), Gaps = 47/388 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 Y+A+L K R++ + + P V + ++ YR +A+ I D D Sbjct: 85 FRHISYKAELEAKRRRVEDAIQRIGGFDRFPVPPVVGAAKINRYRNKAQLPIGADRDGRG 144 Query: 61 HIIFDQ-QTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQI 108 + F + + ++ P ++ Q + ++ + ++ +LRH + Sbjct: 145 IMGFYALHSHRIVPIEDCPLQPKMFAQAVASVKQWMEEYKVPVYHEESHSGLLRHLYLR- 203 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR-------ATKTKI 161 + + +V L+ + + + LR+ L V R + + Sbjct: 204 --EASATGALMVCLVGNGDELPHSGELVKRLREDLPCLESVVFNSNREKTNVILGKRCQA 261 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCG 220 +D I + L + + SF Q N + A + K D +L+LYCG Sbjct: 262 LWGKDGIVDHL----CGLSFFLSPLSFYQVNRDQAEILYRLAGEYASLQKEDTVLDLYCG 317 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G + +A +V+ E+ ++ A+ N N + N++ I + + Q + Sbjct: 318 TGTIGMTMASKAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFICGDSAQAVQMLRK---- 373 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLD-SETEKMVQAYPR-ILYISCNPETLCKNLETLSQ 338 + + + VDPPR G E +V+ PR I+Y+SC+P TL ++L+ L + Sbjct: 374 --------RGERPTVVVVDPPRKGCGLPVLEHIVEIAPRKIIYVSCDPATLARDLKLLVK 425 Query: 339 -THKVERLALFDQFPYTHHMECGVLLTA 365 + ++ LA D FP T H+E LL Sbjct: 426 AGYCLQTLAPVDLFPRTAHVETVALLEK 453 >UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01B5 Length = 446 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 159/387 (41%), Gaps = 54/387 (13%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 +YE QL K +++ + + P + HYR +A++ I + Sbjct: 83 QHIKYEFQLKYKQKQVKDCLERIGKIREVEVLPTIAMENPIHYRNKAQYPIREVDGKIQI 142 Query: 62 IIFDQQTKSRIRVDSFPAASEL---INQLMTA--------MIAGVRNNPVLRHKLFQ--I 108 + ++ + ++ ++ I + + + + RH + + I Sbjct: 143 GFYAAKSHQVVDIEDCVIGNQKNGAIVDAIRKFXKDXKISIYNEATHKGLARHLVIRNSI 202 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDA------LRAQNLNVHLIGRATKTKIE 162 ++ ++A+V L+ + K + E LR L N + A +T Sbjct: 203 NF-----DEAMVCLVINGKKLPHAQDLVERLRAIPGITGILLNHNTAKGNVILAEQTTTL 257 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGN 221 +DYI +++ E+ ++ SF Q N + + AL V + + +L+ YCG Sbjct: 258 DGRDYIMDKI----GELTFKISLLSFFQVNPVQTKVLYDIALGVAALTGSETVLDAYCGI 313 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G SL LA+ RV+ E +VA A N N I NV+ + AE+ Sbjct: 314 GTISLFLAKEAKRVVGVEAIPQAVANANENAQINGIANVEFVLGNAEDVVL--------- 364 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQ 338 + + + VDPPR G + + K + A +++YISC+P TL ++++ + Sbjct: 365 --------GEKFDVVVVDPPRKGCEEDFLKTIVANAPAKMVYISCDPATLARDVKFMYEN 416 Query: 339 THKVERLALFDQFPYTHHMECGVLLTA 365 + V ++ D FPYT H+E VLL+ Sbjct: 417 GYVVNKVQPVDMFPYTSHVETCVLLSR 443 >UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7X4_AMMDK Length = 436 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 82/374 (21%), Positives = 155/374 (41%), Gaps = 31/374 (8%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L YE QL K +++++ + P + HYR + + +G Sbjct: 81 QLLHLDYEHQLHFKNKVVENVLLRLGKLTEVEVKPILGMENPWHYRNKVRLHVAWEGRKP 140 Query: 60 YHIIFDQQTK---SRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDY-LTTLS 115 ++ + RI +N L + ++ + + L + L + Sbjct: 141 VLGLYAPSSHVIGHRIDRSPCYILDGQLNALARVLAGLIKKHAEMLAGLTAVSLRLAAAT 200 Query: 116 NQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVA 175 + +V L + W++ + L A+ V +G K ++ + +I + L Sbjct: 201 GETMVVLEGASEHYSRWKRLVDELTAAVPVTT--VVRVGARGKEEVLYGEGHITDSL--- 255 Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDR 234 + +R SF Q N ++ L+ S + +++ YCG G +L LAR + Sbjct: 256 -DGLSFRLSALSFYQVNPVQTSRLYRKVLEYASLSGRERVIDAYCGVGTITLFLARKAAQ 314 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 V+ EI+ +VA A N A N + +V ++ AAEE + + + Sbjct: 315 VIGIEISPEAVALASVNAAQNGLSHVSFVKGAAEEVLPELLA------------REGMFD 362 Query: 295 TIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQF 351 + +DPPR G+ + + PR++Y+SCNP TL ++L L +Q ++V+ + D F Sbjct: 363 LVVLDPPRQGVKQAALESLVRAQVPRVIYVSCNPATLARDLGFLSAQGYRVQEVQPVDMF 422 Query: 352 PYTHHMECGVLLTA 365 P+T+H+EC L Sbjct: 423 PHTYHVECVAYLCR 436 >UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepID=C4Z8C9_EUBR3 Length = 418 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 156/379 (41%), Gaps = 44/379 (11%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHII-FDQQT 68 +Y+ QL K ++ ++ PF + P V +YR + + + T Sbjct: 56 EYKEQLKTKQAYMKKLLKPFCFVEPIVGMKNPLYYRHKVHAAFDCTRRGQIVAGAYRKNT 115 Query: 69 KSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQIDYLTTLSNQ 117 + ++S + ++++ + +R+ +LRH L + Y T Q Sbjct: 116 HDVVDIESCMIEEQESDEIIRDIKDMLRSFRIKTYDEDTGYGLLRHVLVRKGYAT---GQ 172 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELD--------QDYID 169 +V L+ + +ALR V L KT + L + +I+ Sbjct: 173 IMVVLVLASPILPSKNNFVKALRKK-HPNITTVVLNVNDKKTSMVLGDRNITLYGKGFIE 231 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLAL 228 ++L +R SF Q N + E A+ + K +++ YCG G + Sbjct: 232 DKL----CGCTFRISPGSFYQVNPVQTELLYEKAIHEAHLTGKERIIDAYCGTGTIGIIA 287 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 A+N V+ E+ + ++ A N N I N++ A +F M Sbjct: 288 AKNAGEVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVEM------------AQ 335 Query: 289 KSYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNLETLSQ-THKVERL 345 K + + + +DPPR+G D +V+ P R++Y+SC PETL ++L+ L++ + V+R Sbjct: 336 KGEKADVVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLARDLKYLTKHGYTVKRA 395 Query: 346 ALFDQFPYTHHMECGVLLT 364 +D FP+T H+E LT Sbjct: 396 TPYDCFPFTSHIETVCCLT 414 >UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRA8_9BACE Length = 412 Score = 289 bits (740), Expect = 9e-77, Method: Composition-based stats. Identities = 91/380 (23%), Positives = 160/380 (42%), Gaps = 42/380 (11%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRI-WHDGDDLYHIIFDQQT 68 YE QL K +L+ ++ F + P + HYR + W G +L I+ Q T Sbjct: 51 PYEEQLKRKQAKLEELLGKFGPVAPILGMEHPWHYRNKVISSFAWGPGKNLVSGIYAQGT 110 Query: 69 KSRIRVDSFPAASELIN-----------QLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + V+ E+++ + R ++RH L + + + + Sbjct: 111 HRVVPVEQCLLHREVLDQAVAAVRQAAREFRYQPFDENRRTGLIRHVLCR---HSLSTGE 167 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRA-----QNLNVH--LIGRATKTKIELDQDYIDE 170 + L+ + R A +++ A QN+N + KI + YI++ Sbjct: 168 VLAVLVTASPVLPGARAFAARVKELCPAIVTLAQNVNPRPGSAVLGDREKILYGRGYIED 227 Query: 171 RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALA 229 L + +R +SF Q N + A+ + + K +L+ YCG G L+ A Sbjct: 228 VL----CGVKFRIAPSSFYQINPVQTEVLYSTAISAARLTGKERVLDAYCGVGTIGLSAA 283 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 + V+ E+ + + A A N AN+I N + A F L G+ + Sbjct: 284 AHAGSVVGVELNRSAAACAVDNAKANNIRNARFRCGDAAAF------------LDGMAAR 331 Query: 290 SYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNLETL-SQTHKVERLA 346 Q + +F+DPPR+G + + + P R +YISCNPET ++LE L ++ + E + Sbjct: 332 GEQLDVVFLDPPRAGSTPVFLDALCRVSPARAVYISCNPETQRRDLEYLAARGWRAESIQ 391 Query: 347 LFDQFPYTHHMECGVLLTAK 366 D FP+T H+E +LT + Sbjct: 392 GVDMFPHTEHIETVAVLTRR 411 >UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NR99_9BACE Length = 454 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 85/378 (22%), Positives = 152/378 (40%), Gaps = 38/378 (10%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSH-------YRMRAEFRIWHDGDDLYHI 62 Y +L K +R++ + + L V PV H YR + +F + + Sbjct: 91 NYAEELEAKRIRVEDCLQRIAGLDVTV---PVIHGAKDTRRYRNKVQFPVQPGPEGPRVG 147 Query: 63 IFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-------NNPVLRHKLFQIDYLTTLS 115 + Q+T I V+ E +L A ++ ++ + R + + + Sbjct: 148 FYRQRTHQVISVEDCLLQPETAARLRAAAVSWMQWHNISAYDEKTGRGLVRHVYVRVNRA 207 Query: 116 NQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDY----IDER 171 Q++V LL + K + +ALR+ + + V L K + L Y + Sbjct: 208 GQSLVCLLVNGKSVPQEDALVQALRN-VEPGLVGVVLGVNEKKNNVILGDSYRTLWGQDW 266 Query: 172 LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALAR 230 L +R SF Q NA + ALD + + +L+LYCG G SL +AR Sbjct: 267 LEDTLCGFTFRLSVPSFYQVNANQAEVLYGRALDFAGLTGRETVLDLYCGIGTISLVMAR 326 Query: 231 NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 290 +V E+ +V A+ N N ++N + + + + + Sbjct: 327 QAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGD------------AGEAARALAARG 374 Query: 291 YQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKVERLAL 347 + + + VDPPR GL + + A R++Y+SC+P TL ++++ + + + Sbjct: 375 VKPDVVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLARDVKRFVSLGYVLRKAEA 434 Query: 348 FDQFPYTHHMECGVLLTA 365 D FP T H+E VLLT Sbjct: 435 VDMFPRTAHVESVVLLTR 452 >UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMX5_9FIRM Length = 383 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 157/385 (40%), Gaps = 42/385 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIF 64 L YE QL K + ++ F + + +YR + + D + Sbjct: 16 QLSNMTYEQQLEWKQKDTEKLLGSFGKVSEIIGADDPYNYRNKVQAVFRSDRNGRIISGV 75 Query: 65 DQQTKS-RIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQIDYLT 112 Q +++ + +DS + ++++ + +R+ LRH L ++ T Sbjct: 76 YQSSRNGIVGIDSCMLDDKRADEIIVGIRDLLRSFKLHPYDEGTERGFLRHVLVRVGKNT 135 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDALR-------AQNLNVHLIGRATKTKIELDQ 165 + +V+L+ + + +AL + N ++ ++ + Sbjct: 136 ---GEILVTLVGGNSMFPKKHDFVKALVKRFPDITTVTFSVNRTPEMLLLGENNEVLYGE 192 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNF 224 YI + L +R +SF Q N A ++ ++A+ K +K D+L + Y G G Sbjct: 193 GYITDIL----CGKRFRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIGTI 248 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAMNGVREFNRL 283 + + +V E +V A N N + N+ R A EF + + Sbjct: 249 GIIASDYVKQVQGIEYNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKAKL------ 302 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNLETLSQTHK 341 + + +DP R+G D + +V+ P RI+YISCNP T ++L+TL++ + Sbjct: 303 ------GTHYDAVILDPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKKYT 356 Query: 342 VERLALFDQFPYTHHMECGVLLTAK 366 V + FD FP+T H+EC V ++ K Sbjct: 357 VTDIQPFDMFPHTRHVECVVSMSRK 381 >UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5EMJ7_9FIRM Length = 554 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 150/385 (38%), Gaps = 42/385 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDG-DDLYHII 63 + +Y QL K ++ + + P + HYR + D ++ I Sbjct: 189 QMLDMEYTEQLKRKQKVVEDLFRGVCPVKPIIGMKDPFHYRNKVHAVFDRDKRGNIISGI 248 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQIDYLT 112 + + + I V++ + ++++ + +++ +LRH L + + T Sbjct: 249 YQENSHDVIPVETCMIEDKKADEIIGTIRGMLKSFKIRTYDEDTGYGLLRHVLIRRAFST 308 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDA-------LRAQNLNVHLIGRATKTKIELDQ 165 N+ +V L+ + +ALR+ ++ N + K + + Sbjct: 309 ---NEIMVVLVTASPVFPSKNNFVKALREKHPEITTIIQNINGRGTSMVLGNKENVLYGK 365 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNF 224 YI + L +R SF Q N + AL++ ++ ++ YCG G Sbjct: 366 GYIVDEL----CGCKFRISSKSFYQINPVQTEVLYGKALELAGLKGQEVVIDAYCGIGTI 421 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 + +R +V+ E+ + +V A N N IDN++ A F M Sbjct: 422 GIIASRQAGQVIGVELNQDAVKDAVNNAKMNDIDNIRFYCNDAGRFMVNMAE-------- 473 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ-THK 341 + + + + +DPPRSG E + +++Y+SCNPETL +++ + + + Sbjct: 474 ----RGDKADVVIMDPPRSGSTEEFMDSIAKLGAGKVVYVSCNPETLVRDVRYMKKLGYA 529 Query: 342 VERLALFDQFPYTHHMECGVLLTAK 366 E + D FP T H E V L K Sbjct: 530 AEGVWPVDMFPATRHTEIIVELCRK 554 >UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SWR8_9FIRM Length = 495 Score = 288 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 83/380 (21%), Positives = 160/380 (42%), Gaps = 44/380 (11%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMR--AEFRIWHDGDDLYHIIFDQQ 67 YE QLAEK + +++ F + + HYR + A FR G+ + ++++ Sbjct: 125 PYEQQLAEKQKYIDDLLSVFGPVDKIIGMENPYHYRNKVTAAFRRMKSGE-IISGVYEEG 183 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQIDYLTTLSN 116 T + + V++ E ++ +++ ++RH ++ T Sbjct: 184 THNILPVENCYVEDEKAAAIIRTFAGLIKSFKLQIYNEDTGTGLIRHLQIRVGRKT---G 240 Query: 117 QAVVSLLYHKKLDDEWRQEAEALRDA-------LRAQNLNVHLIGRATKTKIELDQDYID 169 Q +V ++ + + A+AL A ++ N+ + + ++ + YI+ Sbjct: 241 QIMVIIVTASPVFPSKKNLAKALVTAHPEITTVVQNINMKDTSMVIGDRNQVVYGKGYIE 300 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLAL 228 + L +R SF Q N + A+ K + +++ YCG G +A Sbjct: 301 DIL----CGKRFRISPGSFYQVNPEQTEVLYGKAIKYADLKKKETVIDAYCGIGTIGIAA 356 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 + +V+ E+ + +V A+ N+ N I NV I A F + Sbjct: 357 SDRAKKVIGVELNEAAVHDARVNVKMNKIQNVDIYSNDAGRFMVDVAD------------ 404 Query: 289 KSYQCETIFVDPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETLSQ-THKVERL 345 + + +F+DPPRSG E + R++YISC PE+L ++L+ +++ ++V R+ Sbjct: 405 EGDSIDVVFMDPPRSGSTEEFMSSVITLGPKRVVYISCGPESLARDLKYMTKHGYQVIRM 464 Query: 346 ALFDQFPYTHHMECGVLLTA 365 D FP T +E VLLT Sbjct: 465 TPVDMFPLTRGVETVVLLTR 484 >UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacteria RepID=A4XGR8_CALS8 Length = 452 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 76/382 (19%), Positives = 154/382 (40%), Gaps = 38/382 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV----FRSPVSHYRMRAEFRIWHDGDDLY 60 HL +Y+ QL K + ++ L P + YR + + D Sbjct: 82 HLMHAKYQHQLKLKKLLVEDAFRRIGKLSPRINDVIGMENPFRYRNKTALPVGGDYKKPQ 141 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQID 109 + + T + +D E + ++ M + ++ VLRH + + Sbjct: 142 IGFYRKMTHDIVDIDYCLIQHEFCDDVIKGMKDLIQKHKIEVYDEKKHKGVLRHIVVRNS 201 Query: 110 YLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYID 169 + ++ ++ L+ K ++ + + L + + ++L ++L + T I D+D + Sbjct: 202 F---AFDEMMIILVCTKVPENLETIKKDILNNFSKIKSLYLNLNPKRTN-VILGDEDILI 257 Query: 170 E---RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFS 225 + + + SF Q N+ + + + +++ ++Y G G S Sbjct: 258 WGSSTIKDRIGNLTFEISPKSFFQVNSMQTEVLYSQVVKYLRNIDAEIVFDVYSGIGTIS 317 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 + +A +V EI + +V A+ + N I N++ I AE + Sbjct: 318 MFIAPFCKKVYTIEIVEDAVEDAKKSSKNNGISNIEFICGRAE------------IEIPK 365 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTHKV 342 + + + +DPPRSG + E + + P I+Y+SCNP TL ++ L S +++ Sbjct: 366 LLKNGIIPQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILFSNGYEI 425 Query: 343 ERLALFDQFPYTHHMECGVLLT 364 + D FP T H+EC VL+T Sbjct: 426 LEVQPVDMFPQTFHVECVVLMT 447 >UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=1 Tax=Gloeobacter violaceus RepID=Y3134_GLOVI Length = 457 Score = 284 bits (727), Expect = 4e-75, Method: Composition-based stats. Identities = 88/384 (22%), Positives = 152/384 (39%), Gaps = 52/384 (13%) Query: 10 QYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIF 64 Y QL K +++ + + P + + YR ++ F I D I + Sbjct: 97 DYPFQLEAKQRQVREALEHLGGFAEPPVEPVIAQPRPFGYRNKSTFPIGRDARGEPVIGY 156 Query: 65 DQQ-TKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDYLT 112 Q+ + + +D+ P ++ L+ A +R + LRH +I T Sbjct: 157 YQKDSHRIVPLDACPVQDSRLDPLLAAARELIRTQGWSIYDEKHHRGALRHLGLRIGERT 216 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDA---LRAQNLNVHLI----GRATKTKIELDQ 165 Q +++ + + + + A+AL D L LN H +T+ Q Sbjct: 217 ---GQRLLTFVVNGQTLSGIKPAAQALMDRFADLVGVCLNTHTERGNTIFGPQTRCLAGQ 273 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNF 224 D+I+E L +R +F Q + + + + +++ YCG G Sbjct: 274 DFIEEVL----DGFRFRIEPTTFFQICTSQAEILARLVARGADATAEQTVVDAYCGIGTL 329 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 SL LAR V+ E SV A+ N N I+N + + E + Sbjct: 330 SLPLARAARAVVGIESHVRSVEQARQNARINGIENCRFLAGTVEALLPDL---------- 379 Query: 285 GIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYP-RILYISCNPETLCKNLETL-SQTHK 341 + + + VDPPR G D E E ++ A P R++Y+SCNP TL ++L+ L + + Sbjct: 380 -------RADIVVVDPPRKGCDPEVLEAILHAVPMRVVYVSCNPATLARDLKRLVAGGYC 432 Query: 342 VERLALFDQFPYTHHMECGVLLTA 365 + + D F THH+EC L Sbjct: 433 LVGVQPVDLFAQTHHVECVATLER 456 >UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C5ELW2_9FIRM Length = 475 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 92/409 (22%), Positives = 159/409 (38%), Gaps = 61/409 (14%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-------PEVFRSPVSHYRMRAEFRIWHDGD 57 L YE QL K ++ + + P + YR +A+F + D Sbjct: 81 QLQAMSYEEQLRFKENKVLNNLMRIGKFKRDEIKMLPIMGMENPWRYRNKAQFPFGRNKD 140 Query: 58 DLYHIIFD-QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-----------LRHKL 105 F +T I D E +++ + ++ N + +RH L Sbjct: 141 GEIIAGFYAGRTHDIIGNDDCLLGVEENQEILGIIKGFMKENGLEPYDENAHKGLVRHVL 200 Query: 106 FQIDYLTTLSNQAVVSLLYHKK-----LDDEWRQE---------AEALRDALRAQNLNVH 151 + + T + +V L+ + + L+D R A+ L L + V Sbjct: 201 IRKGFKT---GELMVCLVVNGRTLGGRLEDGLRDSRADSLADNSADRLAGCLVEKLCQVK 257 Query: 152 LI------GRATKTKIELDQDYIDERLPVAGKEMI----YRQVENSFTQPNAAMNIQMLE 201 + KT + + ++ ++ P + I Y+ SF Q N ++ Sbjct: 258 GMTSISYSVNMEKTNVIMGKEVVNLYGPGYITDYIGDVQYQISPLSFYQVNPVQTEKLYG 317 Query: 202 WALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNV 260 AL+ S + + +LYCG G SL LA+ +V EI ++ A+ N A N +DNV Sbjct: 318 TALEYADLSGNETVWDLYCGIGTISLFLAQKAKKVYGVEIIPQAIEDARRNAALNGMDNV 377 Query: 261 QIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEK-MVQAYP-R 318 + AEE + + + I VDPPR G D+ +++ P + Sbjct: 378 EFFVGKAEEVLP-----------EQYEKNQIHADVIVVDPPRKGCDTVCLDTILKMRPEK 426 Query: 319 ILYISCNPETLCKNLETLS-QTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++Y+SC+ TL ++L L+ + V ++ D FP T H EC V L K Sbjct: 427 VVYVSCDSATLARDLRYLADGGYVVGKVRGCDMFPGTVHTECIVELCRK 475 >UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n=84 Tax=Bacillales RepID=Y542_BACC1 Length = 459 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 68/389 (17%), Positives = 154/389 (39%), Gaps = 46/389 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPF------SDLVPEVFRSPVSHYRMRAEFRIWHDGDD 58 L Y+ QL +K + + + P + HYR +++ ++ + Sbjct: 90 QLQHLDYKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPWHYRNKSQLQVGRKDEK 149 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQ 107 + ++ Q + I + + N+ + + + ++R + + Sbjct: 150 VITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTR 209 Query: 108 IDYLTTLSNQAVVSLLYHK-------KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK 160 + + V+L+ K + E +++ A++ ++ N + KT Sbjct: 210 T---AVQTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTF 266 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYC 219 ++ I E L ++ + +F Q N + + A + + +++ YC Sbjct: 267 KLAGKEVIQETL----GDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYC 322 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G L LA + V ++ ++A A+ N + N + AE++ Sbjct: 323 GVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWVK--- 379 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLS 337 + ++ + I VDPPR+G D + + + +++Y+SCNP +L ++++ L Sbjct: 380 ---------EGWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALM 430 Query: 338 QTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++++VE + D FP+T H+E V L K Sbjct: 431 KSYEVEYVQPVDMFPHTAHVENVVKLVRK 459 >UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D234_PELTS Length = 470 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 83/397 (20%), Positives = 156/397 (39%), Gaps = 54/397 (13%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L Y QL K + ++ +A + L HYR + F++ D + Sbjct: 90 LQHINYGEQLMLKTILVKDSLARIAGLEKVKVRAAAGMEHPWHYRNKVHFQVEERPDKIA 149 Query: 61 HIIFDQQTKSRI--------RVDSFPAASELINQLMTAMIAGV----------------R 96 +++ T + + +N+L A+I + R Sbjct: 150 LGFYEEGTHNLTAFFNEGACPGTGCLLVDDELNKL-AALIEKLLNRHRGPFGRRILPQKR 208 Query: 97 NNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHL---- 152 + RH + + + T +V+ + + +E +LR L + N++ Sbjct: 209 QSRFFRHIVLRKGFFTGEVMAVLVTGSGEWPGEKAFVKELLSLRPGLVSLVRNINDGPPG 268 Query: 153 IGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG 212 + K++ +++I +RL +I+R +SF Q N + + + Sbjct: 269 VLFGKKSRCLAGREHIKDRL----GHLIFRISPSSFYQVNPVQTLVLYNKVQQYAALTGR 324 Query: 213 D-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT 271 + +++ Y G G+ +L LA RV E +VA A+ N A N I N + + E Sbjct: 325 ETVVDAYSGIGSIALFLAGRAKRVYGLEALPDAVADARKNAALNKITNAEFLTGKVESLI 384 Query: 272 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETL 329 + + + E + +DPPR G E + V PR++Y+SCNP TL Sbjct: 385 PILAA------------QGQRPEVVVLDPPRHGCGREVLEAVVQMQVPRLVYVSCNPATL 432 Query: 330 CKNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 ++L + + V+ + D FP+T H+EC VL++ Sbjct: 433 ARDLRYFADNGYLVDEVQPVDMFPWTAHVECVVLMSR 469 >UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteria RepID=B1C3C0_9FIRM Length = 449 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 161/386 (41%), Gaps = 45/386 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV----FRSPVSHYRMRAEFRIWHDGDDLY 60 L E Q+ K R++ + + EV +YR + + I G+ L Sbjct: 81 QLQHLNQEGQMLFKTKRVKDCLERIGNCFVEVNDCLMMEDPWYYRNKVQMPIGVKGNRLV 140 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQID 109 + Q++ I D ++L NQ+ + + + ++H L + Sbjct: 141 TGFYKQKSNEIIPCDECFIQNKLSNQITKRVKELMEKYKIYPYDKLSHQGNIKHILTKHG 200 Query: 110 YLTTLSNQAVVSLLYH-------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIE 162 Y SN+ ++ L+ + KL E +E ++ ++ N + + K I Sbjct: 201 YH---SNEIMLVLISYLDKINNVDKLVAEITKEFSMIKTVIQNINHRIDNVILGDKEIIL 257 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGN 221 +I + L + Y+ SF Q N ++ + A++ K S D+ L+ YCG Sbjct: 258 FGDGFIYDNL----LDNRYKISLKSFYQVNPIQVEKLYQKAIEFAKLSNDDVVLDAYCGI 313 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G +L+LA+ +V EI ++ A+ N N I+NV+ A ++ + Sbjct: 314 GTIALSLAKYVKKVYGVEIVDTAINDARNNAKLNKIENVEFKCDDAGKYMIELVN----- 368 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEK-MVQAYP-RILYISCNPETLCKNLETLSQ- 338 + + +FVDPPR G E ++QA P +I+YISC+ T ++++ L + Sbjct: 369 -------NNIHLDVVFVDPPRKGCSKEFLDYLIQAKPSKIIYISCDVATQARDIKYLQEF 421 Query: 339 THKVERLALFDQFPYTHHMECGVLLT 364 ++V+ D FP+T H+E + L Sbjct: 422 NYQVDMCQPVDMFPHTTHIENIIRLE 447 >UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacillus RepID=D2M1T5_BACS4 Length = 469 Score = 280 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 151/388 (38%), Gaps = 42/388 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE-------VFRSPVSHYRMRAEFRIWHDGD 57 L YE QL K ++ ++ + + + YR +++ ++ H Sbjct: 97 QLQHLSYEGQLKGKKDIVRQAFERYTKINLDKVDFHDTIGMEEPWKYRNKSQMQVGHHQG 156 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLF 106 + ++ + I ++ N++ + + VLR + Sbjct: 157 KVIAGLYSPNSHKLIDLEDCIVQHPQTNKVTNVVKQLAADMNIAPYNERKRTGVLRTIVT 216 Query: 107 QIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD 166 ++ + T + V L+ KK + EA++ L V I KT + + Sbjct: 217 RVGFET---GEYQVVLVTAKKDIPKVDLFIEAIKQRLPDVTSIVQNIN-PKKTSLVFGDE 272 Query: 167 YID----ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGN 221 I E++ E + +F Q N ++ + A + + + K +++ YCG Sbjct: 273 TIVLYGKEKIEETMSEFRFNLSPRAFFQLNPIQTKKLYDAAKEAAQLTGKEKVVDAYCGV 332 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G L LA + ++ K S+ A+ N A+ I N + AE Sbjct: 333 GTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKAHGIKNAHYVSGKAEHLLPEW------- 385 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ- 338 + + + + + VDPPR+GLD + + RI+Y+SCNP TL KN++ LS+ Sbjct: 386 -----EKEGWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSCNPSTLAKNVDALSKG 440 Query: 339 THKVERLALFDQFPYTHHMECGVLLTAK 366 +K++ L D FP T +EC + K Sbjct: 441 GYKLKALQPVDMFPQTAQVECVARIELK 468 >UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1727 n=19 Tax=Bacillales RepID=Y1727_LISMF Length = 459 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 72/388 (18%), Positives = 144/388 (37%), Gaps = 42/388 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE-------VFRSPVSHYRMRAEFRIWHDGD 57 L Y AQL K + + + + P + YR +++F+ G Sbjct: 86 QLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMVGS 145 Query: 58 DLYHII-FDQQTKSRIRVDSFPA-----------ASELINQLMTAMIAGVRNNPVLRHKL 105 F + + ++ +L+ + + + ++R + Sbjct: 146 GQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRTIV 205 Query: 106 FQIDYLTTLSNQAVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI 161 + T + ++ L +++ E + ++ N + +T + Sbjct: 206 VRTGVKTGETQLVFITNSKKLPKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFGDETFL 265 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCG 220 ++ I+E+L E+ + +F Q N ++ + + + L++ YCG Sbjct: 266 LAGKESIEEKLM----ELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYCG 321 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G A A V +I S+ A+ N N I+NV AE+ Sbjct: 322 VGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVN---- 377 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ 338 + ++ + + VDPPRSG D K + +++Y+SCNP TL ++L L++ Sbjct: 378 --------EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLAK 429 Query: 339 THKVERLALFDQFPYTHHMECGVLLTAK 366 +++ + D FP T H+E VLL K Sbjct: 430 KYRIRYMQPVDMFPQTAHVETVVLLQLK 457 >UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillaceae RepID=A4IK46_GEOTN Length = 463 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 164/389 (42%), Gaps = 51/389 (13%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSD----LVPEVFRSPVSHYRMRAEFRIWHDGDDLYHI 62 QYE QL K +++++ + + HYR + EF +G H Sbjct: 93 QHWQYEGQLRHKTEHVKALLEQHGFDPNIVRETIGMEHPWHYRNKMEFTFSPEGLLGLH- 151 Query: 63 IFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQIDYL 111 + I +++ A E I + + R++ +LRH + + + Sbjct: 152 -EQGNFRQIISLETCLIAGERIVKAAMEVARWARDHQLPGYHKDTHEGLLRHVMVRESFA 210 Query: 112 TTLSNQAVVSLLYHKKLDDEWRQEAEALRD----ALRAQNLNVHLIGRAT-------KTK 160 T + +V+L + + E +Q A+ L + AL + L RA +T Sbjct: 211 T---GEVMVALFATEAPEGELKQAADDLTERITKALPEVKSLLWLENRAWADRIQAEQTH 267 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYC 219 + +D+I + L YR ++F Q N +++E AL++ K + +++L+C Sbjct: 268 VLAGRDFIYDEL----CGFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQPHEKMIDLFC 323 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G FSL A+ + EI + S+ +A+ N N IDN + A + + + Sbjct: 324 GVGTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFLARDARRGIDEV--LEQ 381 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLS 337 F R E + +DPPRSG + + + RI+Y+SCNPET ++ L Sbjct: 382 FGR----------PELLLLDPPRSGAGGKVMRKIGRSQPERIVYVSCNPETFAADIAELV 431 Query: 338 Q-THKVERLALFDQFPYTHHMECGVLLTA 365 + ++ + D FP+T H+E L++ Sbjct: 432 PFGYTLKTVQPVDMFPHTAHVELVALMSR 460 >UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae RepID=A4SRV1_AERS4 Length = 456 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 75/375 (20%), Positives = 147/375 (39%), Gaps = 37/375 (9%) Query: 11 YEAQLAEKVVRLQSMMAPFS----DLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQ 66 Y AQL K +QS + + P + YR +A++ + + + Sbjct: 93 YPAQLKLKQALVQSALEQAGLGNTTVNPILGMESPFAYRNKAQYAVRGCEAGAEIGFYRK 152 Query: 67 QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVL-----------RHKLFQIDYLTTLS 115 + I D L +L + +R + + R+ + + + + Sbjct: 153 HSHDLITADDCAVQDSLHVELNARVRNWMREHDIAAYDEVNHTGCVRNLMTRKGFKSGEL 212 Query: 116 NQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR--ATKTKIELDQDYIDERLP 173 +V+L + E L QN+N R ++ L + I +++ Sbjct: 213 MVVLVTLGEALPFEAELLATLSDLPITTLVQNINDERTNRILGANNRVLLGEGVIRDKI- 271 Query: 174 VAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNF 232 E+ + SF Q N + AL+ + + + + ++YCG G SL LA Sbjct: 272 ---HELEFEISPLSFFQNNPTQTDVLYSSALEYAELTGNETVFDIYCGIGTISLFLAGKA 328 Query: 233 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 +V+ E + +++ A+ N A N I++ + AE+ + + Sbjct: 329 AKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQLMPELYA------------QGVT 376 Query: 293 CETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTHKVERLALFD 349 + + +DPPR G D + + A R++Y+SCNP+TL ++L L Q ++ + D Sbjct: 377 ADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGFMLDEVQPVD 436 Query: 350 QFPYTHHMECGVLLT 364 FP++ H+E L+ Sbjct: 437 MFPHSMHVEAVARLS 451 >UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=78 Tax=root RepID=Y932_STRR6 Length = 543 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 160/389 (41%), Gaps = 50/389 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L Y QL K +++ + + ++ + YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQID 109 F + + + + ++ F +I+Q++ A+ +R + ++R+ + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 110 YLTTLSNQAVVSLLYHKK----LDDEWRQEAEALRDAL-RAQNLNVH----LIGRATKTK 160 + S Q +V L+ + +D Q + + + QN+N + G+ +T Sbjct: 203 H---YSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRT- 258 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYC 219 QDYI +++ ++ +F Q N M ++ + A+D + K D+ ++ Y Sbjct: 259 -LYGQDYITDQM----LGNDFQIAGLAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYS 313 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G L++A++ V E+ +V ++ N N+I N + AE + Sbjct: 314 GIGTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWLK--- 370 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLS 337 Q I VDPPR GL K RI YISCN T+ ++++ Sbjct: 371 ---------DGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQ 421 Query: 338 Q-THKVERLALFDQFPYTHHMECGVLLTA 365 + ++++++ D FP THH+E LL+ Sbjct: 422 ELGYELKKVQPVDLFPQTHHVETVALLSK 450 >UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzyme n=18 Tax=Firmicutes RepID=Q03VV3_LEUMM Length = 464 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 160/388 (41%), Gaps = 47/388 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS---DLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 L +YEAQLA K +++ + + D+ P + + YR +A+ + L Sbjct: 94 PLANLKYEAQLAFKQHQIEELFKKVNVDVDVAPTIGMENPTGYRNKAQVPVQMINGKLET 153 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDY 110 + + + + ++ F +++ + +R V+RH + + Y Sbjct: 154 GFYRRGSHRLVPIEDFYIQDPKVDEAVRITRDILRELGVSAYEEETKKGVIRHIMARRGY 213 Query: 111 LTTLSNQAVVSLLYHKKL--DDEWRQEAEALRDALRAQNLNVH------LIGRATKTKIE 162 + VV + KKL D ++ A L++ N++ ++G+ +T Sbjct: 214 YS--HELMVVIITNTKKLPNSDLIAEKLSAKLPELKSVIHNINNHDTNVIMGQWNET--I 269 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGN 221 +D I ++L GK+ + NSF Q N + A + D++ + Y G Sbjct: 270 WGEDDIHDQL--MGKDFV--IGPNSFYQVNPQTTSTLYALAAEKANLKPTDVVVDAYSGI 325 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G +L++A ++ ++ + ++ A+ N N I N + + A E Sbjct: 326 GTITLSVADKVKKIYGVDVVEGAIEDAEKNAKNNQITNAEFVLADAPEQMAKWAD----- 380 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKN-LETLSQ 338 + + +FVDPPR GL E V+A + +YISCNP TL ++ ++ L+ Sbjct: 381 -------EGLKPNVVFVDPPRKGLTQELIDAVKAMNPEKFVYISCNPATLARDAVQILAA 433 Query: 339 THKVE-RLALFDQFPYTHHMECGVLLTA 365 ++E + DQFP T H+E + Sbjct: 434 GFEIEGAVQPLDQFPQTTHVESITVFKK 461 >UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CT87_9CLOT Length = 506 Score = 278 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 85/412 (20%), Positives = 153/412 (37%), Gaps = 69/412 (16%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV------------------------------- 33 L YEAQL K ++ + + + Sbjct: 100 QLQMMDYEAQLRFKERKIYNNLKRIGGMENLRLPGEECGSEDEGAGTGERAGADGRKIVR 159 Query: 34 --PEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD-QQTKSRIRVDSFPAASELINQLMTA 90 P + YR +A+F D F +T S I + E +++ Sbjct: 160 MEPIMGMEEPWRYRNKAQFPFGMSKDGRVITGFYAGRTHSIIENEDCLLGVEENREILRI 219 Query: 91 MIAGVR-----------NNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEAL 139 + + + ++RH L + + T + +V L+ + + + E L Sbjct: 220 VREFMEEFGVKPYDEEGHRGLVRHCLIRKGFAT---GEIMVCLVVNGRKLPKDEVLVERL 276 Query: 140 RDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI----YRQVENSFTQPNAAM 195 R ++ L KT + L + ++ P + I Y+ SF Q N A Sbjct: 277 RQ--VDGMTSISLCVNTEKTNVILGDEVVNLWGPGYITDYIGDVKYQISPLSFYQVNPAQ 334 Query: 196 NIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAA 254 +++ AL+ + + + +LYCG G SL LA+ +V EI ++ A+ N Sbjct: 335 TVKLYGTALEYAGLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQAIEDARRNAKI 394 Query: 255 NHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV- 313 N I+NV+ AEE + + K + I VDPPR G D + Sbjct: 395 NGIENVEFFVGKAEEVLP-----------REFEEKQIYADVIVVDPPRKGCDEVCLDTIV 443 Query: 314 -QAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLL 363 R++Y+SC+ TL ++++ L + VER+ D F + H+E +++ Sbjct: 444 KMGPKRVVYVSCDSATLGRDVKYLGERGFVVERVRGCDMFGGSGHVETVIMM 495 >UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Pseudomonadaceae RepID=B3PL62_CELJU Length = 485 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 161/377 (42%), Gaps = 33/377 (8%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS----HYRMRAEFRIWHDGDDL 59 +HL E AQL K + + + L P+ P+ YR RA +W++ D Sbjct: 127 QHLKPE---AQLLMKQQVVLEQVHRWGGLTPKRVLPPLRSESLGYRSRARLGVWYEADSS 183 Query: 60 YHIIFDQQ-TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + F QQ K+ ++S +N+L+ + ++ V + I+ + S A Sbjct: 184 VTLGFRQQQRKTLTNIESCSVLLPALNRLIGPLRQWLQAR-VANKAVTHIELVAAQSGPA 242 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKE 178 V + + K L RQ L ++ V L + +L+ +D L + Sbjct: 243 -VIVRHTKPLVALQRQALAELAQR---ESCQVWLEPNGNQGLTDLEGSPVDPHLVLDVAG 298 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLA 237 + FTQ N A+N +M++ AL++ D +L+ +CG GNF+L +A RV+ Sbjct: 299 LPLHFHPQDFTQVNPAVNGRMVQQALELLAPGTNDLVLDFFCGMGNFTLPMASRVARVIG 358 Query: 238 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 E+ +P V AQ N +DN++ ++ + + Q I Sbjct: 359 LEVVEPMVTRAQANATRLGLDNLEFLKADLSQMDS-----------PRLRQLCSQASAIL 407 Query: 298 VDPPRSGLDSETEKMVQ-------AYPRILYISCNPETLCKNLETLSQ-THKVERLALFD 349 +DPPR G ++ + RI+Y+SCNP TL ++ L++ + ++ L + D Sbjct: 408 LDPPRDGAKELVTQLRDLRRKGQLSAQRIVYVSCNPATLARDAALLAEAGYGLDALGVMD 467 Query: 350 QFPYTHHMECGVLLTAK 366 FP+T H+E L K Sbjct: 468 MFPHTSHVESMALFLYK 484 >UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BA92_THEAS Length = 457 Score = 277 bits (708), Expect = 6e-73, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 148/391 (37%), Gaps = 48/391 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y QL+ K +Q M + P YR +A + G Sbjct: 82 QLQHADYPLQLSMKRRVVQDAMRRIGGFEDPPVEPCEMSPLQWGYRNKAIVPVRSQGRGW 141 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV----------------RNNPVLRH 103 + + + + S P S+ IN++M + + R + LR Sbjct: 142 GMGFYRPFSHEVVPLRSCPVMSDEINRVMGLIRDFLEPRIRGGLLSPYREGDRPSGSLRE 201 Query: 104 KLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRA-QNLNVHLIGRATKTKIE 162 + + T + +VSL+ + + E L L + + + Sbjct: 202 VVVRHGMRT---GELLVSLVMRQDPRGRLLSDLEGLFRLLEGLGVVGLSVFRNRRDANFV 258 Query: 163 LDQDYID----ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLEL 217 D D+ +R+ M SF Q N +M + +D+ + D+LEL Sbjct: 259 WDGDFAWGIGRDRMWEVLGGMRLSYDVTSFFQVNTHQAERMFQHVVDLLDETGARDVLEL 318 Query: 218 YCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 277 Y G G+ + +A RV+A E +V + N+ N I V + AAE+ + G Sbjct: 319 YSGVGSLTGMIAAGGRRVVAVEEWPSAVEGLRENLQVNGIHGVTPLLGAAEDVLGDLGG- 377 Query: 278 REFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLET 335 + + +DPPR G E + + A P ++Y+SCNP TL ++L Sbjct: 378 --------------DFQAVVLDPPRGGCHPEVIRAMVDAAVPHVIYVSCNPATLARDLML 423 Query: 336 LSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 LSQ + + R+ FD FP T H+EC L++ Sbjct: 424 LSQGGYVLRRVRPFDMFPQTCHVECVTLMSR 454 >UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 Tax=Bacillales RepID=YFJO_BACSU Length = 466 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 71/388 (18%), Positives = 145/388 (37%), Gaps = 42/388 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE-------VFRSPVSHYRMRAEFRIWHDGD 57 L Y QL EK + + + E + +YR +++F+I Sbjct: 92 QLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNKSQFQIGRSQS 151 Query: 58 DLYHII-FDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKL 105 + + + + N+ + + + +R + Sbjct: 152 GSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYNERKRKGDVRTIV 211 Query: 106 FQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVH----LIGRATKTKI 161 ++ + T +V+ +E + + +++ NV+ + KTK Sbjct: 212 TRVGFETGEVQVVLVTAKETLPHKEEIVKAIQKRLPEVKSIIQNVNGAKTSVIFGEKTKQ 271 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCG 220 + I E L ++ + +F Q N +++ + + + K +++ YCG Sbjct: 272 LAGKTVIQEVL----GDVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKEKVVDAYCG 327 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G + +A V ++ K S+ A+ N + + N + AE + Sbjct: 328 VGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTAEHWLPKWTK---- 383 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQ 338 + ++ + + VDPPR+G DS ++ R +Y+SCNP TL K+L+TLS+ Sbjct: 384 --------EGFRPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAKDLQTLSK 435 Query: 339 THKVERLALFDQFPYTHHMECGVLLTAK 366 ++V+ + D FP T H+E L K Sbjct: 436 DYRVDYIQPVDMFPQTAHVEAVARLVLK 463 >UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRD2_9SYNE Length = 483 Score = 276 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 154/385 (40%), Gaps = 51/385 (13%) Query: 10 QYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDG-DDLYHII 63 YE QLA K + +A + P + YR +A + + D+ Sbjct: 121 NYEEQLAAKHRLVVDALARIGKLSNVRVDPVLAAEEQLGYRNKATYPLGLSPTKDVKAGY 180 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDYLT 112 + + + + ++ P E ++ L+ A+ ++ + ++H +I T Sbjct: 181 YQKGSHRLVNLNQCPVQDERLDPLLAAVKKDIQAREWKIYDERSHKGHIKHLALRIGRRT 240 Query: 113 TLSNQAVVSLL-YHKKLDDEWRQEAEALRDALRAQNLNVHLIGR------ATKTKIELDQ 165 Q +V+L+ KL Q + + + V+L + +T + Sbjct: 241 ---GQILVTLVSRSTKLKGIHEQAQQWMERYPEVVGVLVNLNWKKTNAIFGPETFLIAGS 297 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNF 224 Y++E+ + + +F Q N ++L+ + +++ + YCG G F Sbjct: 298 SYLEEKFA----NLTFHIQPATFFQVNTTQAERLLDEIQTELALTGDEVIVDAYCGVGTF 353 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 +L LAR + + E + SV AQ N A N I+NV ++ Sbjct: 354 TLPLARQVKQCIGLESSTESVVQAQENAALNGIENVGFRIGDVAALLPDLD--------- 404 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETLSQ--TH 340 + + + +DPPR G + + + RI+Y+SCNP TL ++L LS+ + Sbjct: 405 ------VKPDILLLDPPRKGCELAVLESIVAIKPKRIVYVSCNPATLARDLRVLSETGGY 458 Query: 341 KVERLALFDQFPYTHHMECGVLLTA 365 +V R+ D FP T H+EC V L A Sbjct: 459 RVTRVQPADFFPQTAHVECAVFLEA 483 >UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 Tax=Lactobacillales RepID=B1N060_LEUCK Length = 473 Score = 276 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 166/389 (42%), Gaps = 49/389 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS---DLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 L +YEAQL K +++ + + ++ P + + + YR +A+ + L Sbjct: 106 PLANLKYEAQLTFKQRQVEQLFKKVNVSVEVNPTIGMTDPTKYRNKAQVPVQMVNGQLET 165 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDY 110 + + + + V+ F +++ ++ +R + V+RH + + + Sbjct: 166 GFYRRGSHKLMPVEDFYIQDPKVDEAVSVTRDVLRDLGISAYDEETHKGVVRHIMARRGF 225 Query: 111 LTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALR-----AQNLNVH----LIGRATKTKI 161 S++ +V ++ + K E A ALR L N+N H ++G+ +T Sbjct: 226 ---YSHELMVVIITNTKKLPEADNIAAALRAKLPELKSFIHNINNHDTNVIMGQWNET-- 280 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCG 220 D I ++L GK+ I NSF Q N + A + D++ + Y G Sbjct: 281 VWGADEIHDQL--MGKDFI--IGPNSFYQINPQTTAVLYTLAAEKAGLKPTDVVVDAYSG 336 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G +L++A +V E+ + +V A+ N NHIDNV+ + A E Sbjct: 337 IGTITLSIADQVAKVYGVEVVEDAVLDAEKNAQNNHIDNVEFVTADAPEQMTQWAA---- 392 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKN-LETLS 337 + + +FVDPPR GL +E V A +YISCNP TL ++ ++ L+ Sbjct: 393 --------DGLKPDVVFVDPPRKGLTNELISAVSAMQPKTFVYISCNPATLARDTVQILA 444 Query: 338 QTHKVER-LALFDQFPYTHHMECGVLLTA 365 + ++ + DQFP T H+E ++ Sbjct: 445 EGFHIDGPIQPIDQFPQTTHVESVLIFKR 473 >UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=11 Tax=Lactobacillus RepID=Y1698_LACJO Length = 450 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 159/380 (41%), Gaps = 34/380 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV---FRSPV-SHYRMRAEFRIWHDGDDLYH 61 L +Y+ QL K ++ +++ +V SP + YR +A+ + L Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLHKADLDNVKVGQTMPSPEETGYRNKAQVPVREVNGKLDI 141 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLR----HKLFQIDYL----TT 113 F + + + + SF I++++ + +R N V H ++ YL + Sbjct: 142 GFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLEVRRSK 201 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ-DYI---D 169 + + +V L+ K + ++ + + + +V L KT + L + DY+ + Sbjct: 202 ATGEIMVILVCLHKDFPQLKEVTKEISEI--KGVTSVVLNHNPKKTNVILGKKDYLLWGE 259 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLAL 228 ++ ++ ++ SF Q N+ ++ + A+ D+ ++ Y G G L++ Sbjct: 260 PQITDKIGDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGLSV 319 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 A++ V E+ +P+V A N N I N + + AEE Sbjct: 320 AKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVMPRW------------AK 367 Query: 289 KSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLS-QTHKVERL 345 + + + IFVDPPR GL E +I+YISCNP T+ ++L+ Q + + + Sbjct: 368 EGLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGYDFDEI 427 Query: 346 ALFDQFPYTHHMECGVLLTA 365 D FP T H+E +L Sbjct: 428 DPVDMFPQTPHVEAVAVLER 447 >UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 n=40 Tax=Clostridia RepID=Y1941_CLOTE Length = 456 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 153/391 (39%), Gaps = 53/391 (13%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFS----DLVPEVFRSPVSHYRMRAEFRIW--HDGDDLY 60 YE QL K + + + D +P YR + EF G +L Sbjct: 85 QDIPYEKQLEIKQHEILELFKKANLDGFDFLPIEGSPKQYEYRNKMEFTFGDLKKGGELN 144 Query: 61 HIIFDQQTK-SRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQI 108 + + I D E ++ A + R LR+ + + Sbjct: 145 LGMHAKGMSFGIISADECKIVDEDYRNILNATLNYFREKQLPHYRIMAREGYLRNLVIR- 203 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDA---------LRAQNLNVHLIGRATKT 159 + + +V+L+ ++D + E ++ L N ++ + + K Sbjct: 204 --KAENTGEVLVNLVTTSQIDFNLDEYTEIIKSINYKGNLVGILHTINDSLSDVVQCDKL 261 Query: 160 KIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELY 218 I +DYI E L + ++ SF Q N+ ++ D SK + +LY Sbjct: 262 NILYGRDYIIEDL----LGLKFKITPLSFFQTNSKGAEKLYSIVRDFIGESKSKTVFDLY 317 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 CG G +A +V+ E+ + +V +A+ N N+++N + I + + + Sbjct: 318 CGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNLNNCEFIAGDIAQVIKEVK--- 374 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETL 336 + + I +DPPR G+ + + V + P I+Y+SCNP+TL ++L+ L Sbjct: 375 ------------QKPDVIILDPPRPGVHPKALEYVIKFDSPTIVYVSCNPKTLVEDLKVL 422 Query: 337 SQ-THKVERLALFDQFPYTHHMECGVLLTAK 366 + + +E++ D FP T H+E V L K Sbjct: 423 VENGYVIEKVKGMDMFPSTPHVETVVGLRRK 453 >UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMY7_9FIRM Length = 493 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 148/388 (38%), Gaps = 48/388 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFR----SPVSHYRMRAEFRIWHDGDDLYH 61 L YEAQL K ++ L PE + ++ YR + + I D D Sbjct: 82 LRHISYEAQLRAKEQFVKDAFTRIGGLSPEFLPIIRNTNINGYRNKLQIPIGTDKDGNLI 141 Query: 62 IIFDQ-QTKSRIRVDSFPAASELINQLMTAMI-----------AGVRNNPVLRHKLFQID 109 F + + + ++ ++ + + +LRH + Sbjct: 142 AGFYAFHSHRIVPCEKCLLQPDIFLKITADFLKISTGLNLTAYDETTHKGILRHLYLRKG 201 Query: 110 YLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYID 169 Y S + + ++ K + + L + +++ R T + L D Sbjct: 202 Y---YSGEICLCIVVAKNVPEIKILSDRLLEKYPEIVSSVINVNNRD--TNVILG----D 252 Query: 170 ERLPVAGKEMI--------YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGN 221 E + + K I +F Q N Q+ A D + +L+LYCG Sbjct: 253 EEIVLTSKNYICDIMCKNAVNIAPKAFYQVNTPCAEQLYSSACDFAEPKGKTVLDLYCGA 312 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G L++AR +++ EI ++ A+ N AN I N + I A E + ++ Sbjct: 313 GTIGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARILHS----- 367 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ- 338 ++ + + I VDPPR G + + + A+ PRI+ +SCN T ++ ++ Sbjct: 368 -------RNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCACFAEL 420 Query: 339 THKVERLALFDQFPYTHHMECGVLLTAK 366 + ++ D F T+H+E VLL+ K Sbjct: 421 GYSTDKCVAVDMFSGTNHVETVVLLSHK 448 >UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=Sulfurihydrogenibium RepID=C1DTC8_SULAA Length = 420 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 80/371 (21%), Positives = 156/371 (42%), Gaps = 38/371 (10%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVP---EVFRSPVSHYRMRAEFRIWHDGDDLY 60 +H+P YE Q+ K L+ + + +V+ S +YR++ +F+ D Sbjct: 78 QHIP---YEKQIEIKKEILKDQLLRIGKVDLPIEKVYPSQPFNYRIKVQFKF----DGKN 130 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 + Q + I +D E NQ++ + + + Q+ + NQ ++ Sbjct: 131 FGFYRQNSNQVIDIDYCYLLKEDFNQIIHPLKKFLFKYAL---SPSQVIVFSNSKNQKLI 187 Query: 121 SLLYHKKLD-DEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 ++ + E +D + + + K ++ L + I E + Sbjct: 188 KFVFPDNSQIANIIPKIEIYKDEIDENIKGIGFYDK-KKRQLLLGEYVIFETV----DNY 242 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELYCGNGNFSLALARNFDRVLAT 238 YR +SF Q N +++ + K ++ YCG G FS+ LA VL Sbjct: 243 KYRVSMDSFFQVNIYQIKNLIDLVVQEVKDKGYKRAVDFYCGVGTFSVPLANYVREVLGI 302 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E + +V A+ N+ N++ N++ ++ E+ + K ++ E + Sbjct: 303 ESNEEAVKDAKTNVRHNNLKNLKFLKAKTEKGLKY--------------AKDFKPEVVVF 348 Query: 299 DPPRSGLDSETEK---MVQAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYT 354 DPPRSGL+ + +++ +I+YISCNP TL ++L+ + ++++ D FP T Sbjct: 349 DPPRSGLNKTIIREISKIESIQKIIYISCNPSTLARDLKDFKEYGFNPLKVSMVDMFPQT 408 Query: 355 HHMECGVLLTA 365 HH+E V+L Sbjct: 409 HHIESVVVLEK 419 >UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD26_CARHZ Length = 441 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 94/384 (24%), Positives = 152/384 (39%), Gaps = 44/384 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV----FRSPVSHYRMRAEFRIWHDGDDLYH 61 L YE QL K ++ ++M + + YR + F + L Sbjct: 79 LQNLDYEQQLVLKKTKVYNIMKKIGRIDAPINSVLPNFAFYRYRQKVHFTFGSSQNKLAI 138 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMT---------AMIAGVRNNPVLRHKLFQIDYLT 112 FD++ V A + + ++ + A + VLRH + + T Sbjct: 139 GYFDRKNNWF-PVTDCLIADKSLVEVAHYVTEILDAFKLKAYFNDAGVLRHLVVRKS-ST 196 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR------ATKTKIELDQD 166 T Q V++ + KL+ ++ A + Q+L H + T + Sbjct: 197 TGEIQVVITAV---KLNFNVKEIAAKILLNPEIQSLTFHENPKKTREVFGKGTAVTFGTR 253 Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFS 225 YI E L + YR SF Q N ++ ALD K D + + Y G G+ + Sbjct: 254 YITEEL----LGISYRLTPLSFFQINPVQAEKIYRIALDYLDLGKTDMVFDGYSGVGSLT 309 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 L AR V+ E + +V A+ N N I NV EE +L Sbjct: 310 LPAARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEE------------KLPW 357 Query: 286 IDLKSYQCETIFVDPPRSGLDSET-EKMVQAYP-RILYISCNPETLCKNLETLSQ-THKV 342 + K Y+ I +DPPR G+ E E++++ P RI+Y+SCNP T ++L+ L++ + Sbjct: 358 LLKKGYRFNKIILDPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKILAETGYYP 417 Query: 343 ERLALFDQFPYTHHMECGVLLTAK 366 + D F T H+E VLL K Sbjct: 418 VEITPVDMFSQTMHVENVVLLKKK 441 >UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Persephonella marina EX-H1 RepID=C0QRS2_PERMH Length = 421 Score = 273 bits (698), Expect = 8e-72, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 155/370 (41%), Gaps = 38/370 (10%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLVPE----VFRSP-VSHYRMRAEFRIWHDGDDLYH 61 YE Q+ K L + L + ++ S +YR R + +I + Sbjct: 77 QHITYEKQVEIKAEILLETLNRIGRLNIDRIDKIYPSKKPFNYRNRTQLKIRGEK----I 132 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVS 121 + ++++ I +DS E IN +++ + ++ L + Q+ ++ +A+V Sbjct: 133 GFYMRESRQIINIDSCLLLKEDINGMISGVREILK---FLIFQPEQVHIYSSSDGEALVK 189 Query: 122 LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRAT---KTKIELDQDYIDERLPVAGKE 178 +Y K++ + + LR L + + R K + L + YI E Sbjct: 190 FVYQKRVR-RFPLGLKHLRSFLSEKLKGAGIYHRKDDLLKRDVLLGESYIYEEY----GG 244 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLAT 238 + +R +SF Q N +L+ L + + +L+CG G +L AR + Sbjct: 245 IKFRVSMDSFFQVNVYQVENLLDAVLQNIGDHEKAV-DLFCGVGTLTLPSARYIKEIYGI 303 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E +V A +N N I N + RM A G + + + + + Sbjct: 304 ESNPYAVNDANHNRKLNRIKNAKFFRMDANR--------------SGGFIAELKPDLVII 349 Query: 299 DPPRSGLDSETEKM---VQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTH 355 DPPR+G+ + + + RI+Y+SCNP TL ++L L + + VE++ + D FP T+ Sbjct: 350 DPPRTGVSDDLVRTFLDTDSIKRIIYVSCNPSTLARDLGYLKERYSVEKVYMIDMFPQTY 409 Query: 356 HMECGVLLTA 365 H+E V+L Sbjct: 410 HIESVVVLQK 419 >UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10 Tax=Gammaproteobacteria RepID=RUMA_MARAV Length = 449 Score = 273 bits (698), Expect = 8e-72, Method: Composition-based stats. Identities = 81/375 (21%), Positives = 153/375 (40%), Gaps = 32/375 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS-----HYRMRAEFRIWH-DGDDL 59 L +AQ+ K L+ A F + PE + +P+ YR +A + + + Sbjct: 89 LQHMSADAQIRFKENTLREHFAHFGGIEPEQWVAPMRSPDSLGYRRKARLGVRYVKARES 148 Query: 60 YHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + F ++ S + +D I + + + + ++ Q++ A Sbjct: 149 VLVGFREKRNSFLTDIDRCVVLDPRIGERIEPLRELLHGMAAF-DRIAQVEVACGDDTAA 207 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL-----DQDYIDERLP 173 +V + +DD + E L +A +L+++L + T + +D Sbjct: 208 MV----FRNMDDLVPDDREKLIAFGQAHDLHIYLQPKGPDTVHRIWPESGGRDDERLTYR 263 Query: 174 VAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNF 232 + ++ FTQ NA +N M+ A++ G+ +L+L+CG GNF+L LAR Sbjct: 264 MDEFDLTMAFHPMDFTQVNAGINRNMVHRAVEWLDVQPGERVLDLFCGLGNFTLPLARKG 323 Query: 233 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 +V+ E V + N N + NV+ +G G Sbjct: 324 GQVVGVEGDDAMVVRGRENARLNDLSNVEF------------HGADLHGDFTGQSWAKEG 371 Query: 293 CETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQ 350 + I +DPPRSG + + + RI+Y+SCNP TL ++ + + +++ + + D Sbjct: 372 FDKILIDPPRSGAEEICKYLTAFGANRIVYVSCNPATLARDAGVMVRNGYRLVQAGVMDM 431 Query: 351 FPYTHHMECGVLLTA 365 FP+T H+E L Sbjct: 432 FPHTTHVESIALFER 446 >UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZT5_DESAS Length = 458 Score = 273 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 72/386 (18%), Positives = 144/386 (37%), Gaps = 41/386 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y QL K ++ + S L P + +YR + + Sbjct: 88 QLQHSSYAEQLKLKEKFVRDNLKRISGLPDAVVLPTIGMENPWNYRNKIHLHAGRKNNRT 147 Query: 60 YHIIFDQQTKSRIRVDSF------------PAASELINQLMTAMIAGVRNNPVLRHKLFQ 107 F + + + + +LIN+ +LR + + Sbjct: 148 VLGFFSEGSHILVEGTACCQINDGRLNEISAILEDLINKYKLEPYNKHSKKGLLRGVMLR 207 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR----ATKTKIEL 163 T +V++ + + +E + + N++ + K+ Sbjct: 208 KAEATGQVMLVLVTVSGNLPGQSTFTRELVNQCPDITSIIRNINNGNNSLLLGSVNKLIW 267 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNG 222 ++ I +++ K++ + NSF Q N I++ + AL+ + + +L+ YCG G Sbjct: 268 GKEIIVDKI----KDLSFYISANSFYQINPKQTIKLYDKALEYAELKGNETVLDAYCGIG 323 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 ++ + N +V E +V A+ N A N ++NV+ + E+ Sbjct: 324 TIAMYFSANARKVTGLESLNIAVKDARENAALNRLNNVEFLCGEVEKL------------ 371 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQ-T 339 L ++ + I +DPPR G + + P+I+Y+SCNP TL ++L L + Sbjct: 372 LPEFAERNNNVDIIILDPPRQGCKQVVLEAIAKMRIPKIIYVSCNPGTLARDLGLLDKLG 431 Query: 340 HKVERLALFDQFPYTHHMECGVLLTA 365 + + + D FP T H+E L+ Sbjct: 432 YGIIEVQPVDMFPQTSHIEICTFLSK 457 >UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VI35_9BACT Length = 456 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 98/384 (25%), Positives = 159/384 (41%), Gaps = 50/384 (13%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP---VSHYRMRAEFRIWH--DGDDLYHIIF 64 +Y QL +K L + +PF D F +P + HYR + + + + +F Sbjct: 87 KYSEQLKQKNQLLLELFSPFIDKDVIYFPAPSPQIKHYRNKVFMPVGKNYQTGKITYGMF 146 Query: 65 DQQTKSRIRVDSF----PAASELINQLMT-------AMIAGVRNNPVLRHKLFQID---- 109 + + + ++ P +L N LM + + LRH F+ + Sbjct: 147 ARFSHQIVEHNTCENHPPIFDQLANSLMEFCLKAKVEPYNEIEHKGQLRHIGFRCNSDGR 206 Query: 110 ----YLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ 165 L TLS + + L KKL E+ Q + + + Q NV ++G+ TK Sbjct: 207 QILVILVTLSGKLPFTNLLVKKLTTEFPQ-IKGIIQNINRQKENV-ILGKETKLL----- 259 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFS 225 Y E L + +R SF Q N ++ + D S +L+ YCG G Sbjct: 260 -YGSENLYDNLCGLKFRINYRSFWQINTGTMEMIISFLQDFV-NSNNVILDAYCGIGAIG 317 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 L+LA RV+ E ++ A+ N N + NV + E+ A+ Sbjct: 318 LSLADKVKRVILLEEFPQAIEDAKENAVLNGLKNVSFVIGKVEDNLSAV----------- 366 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL--SQTHK 341 L + +TI +DPPRSG+ + + +I+Y+SC P TL ++L TL + +K Sbjct: 367 --LIKEKPDTIIMDPPRSGVQQNALEAIIQAEVKQIIYLSCAPMTLARDLNTLIAGEKYK 424 Query: 342 VERLALFDQFPYTHHMECGVLLTA 365 V L FD FP T H+EC +L Sbjct: 425 VVFLQPFDMFPNTWHIECLAVLKH 448 >UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4G9_9CHLA Length = 449 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 146/387 (37%), Gaps = 50/387 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y QL K + + + + P V YR + + + D L Sbjct: 83 QLMHLGYPKQLEMKRQIVLNALERIGHLKNISIDPCVSSPQELEYRNKIQLPVMMKPDGL 142 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQI 108 ++ + + + I VD E + +++ ++ + VLRH L + Sbjct: 143 TVGLYARNSHTIIPVDHCLIHCEQGENVYQSVLKLLKQSDIAPYDERTGKGVLRHLLIK- 201 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIE------ 162 +++++V L+ ++ + A+ + A + I R I Sbjct: 202 --SALQTSESLVILVTSQEKCTSLQALAQQIMQACPEVKGVIQNINRKRDNVILGTDWHT 259 Query: 163 -LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELYCG 220 + YI E + + + ++F Q N A + + L + K L+ +CG Sbjct: 260 LAGKSYIREMI----CDHHFHISPSAFFQVNPAQAESIYQHVLSLADLDKTKTFLDAFCG 315 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G +L A + E ++ A N N I N AE Q++ + Sbjct: 316 VGTMTLIAAGQAKECIGIECVPQAIEDANANAQLNQISNAVFYCDHAESKIQSLKDI--- 372 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ 338 + +F++PPR G + ++ ILY+SC+P TL ++L+ L Q Sbjct: 373 -------------DVVFLNPPRKGCEESLLNRLKIVKPETILYMSCDPATLARDLKILVQ 419 Query: 339 -THKVERLALFDQFPYTHHMECGVLLT 364 +++E++ FD FP T H+E V LT Sbjct: 420 HGYQIEQVTPFDMFPQTAHVETVVKLT 446 >UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=16 Tax=Fusobacterium RepID=Y1713_FUSNN Length = 464 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 78/378 (20%), Positives = 162/378 (42%), Gaps = 34/378 (8%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDL----VPEVFRSP-VSHYRMRAEFRIWHDGDDLYHIIF 64 +YE+QL K ++ ++ + L + +V S + +YR + + + F Sbjct: 99 KYESQLKYKRFMVEEVIRKIAGLSDIEISDVLASEDIYNYRNKIIEPFSVYANKIITGFF 158 Query: 65 DQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVL-------RHKLFQIDYLTTLSNQ 117 +++ VD S+L N+++ + + N + + L I T +N+ Sbjct: 159 KRKSHEVFEVDENILNSKLGNKIIKELKEILNKNKISVYDENTHKGILRNIMIRTNSNNE 218 Query: 118 AVVSLLYHK-KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD----YIDERL 172 A+V L+ + K+ + ++ LR+ + ++++ + KT + + Y ++ + Sbjct: 219 AMVVLIINSNKITENIKKLLFKLRENIEEIK-SIYISLNSKKTNTVIGEKNILIYGEKSI 277 Query: 173 PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN 231 + + SF Q N ++ + A+ +++ Y G G + +A+ Sbjct: 278 KENINRIEFHISPTSFFQINVKQAKRLYDIAISFFDNIDNKYIVDAYSGTGTIGMIIAKK 337 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY 291 +V A EI K + + N I+N++ I A E+ L + + Sbjct: 338 AKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEK------------ELVKLVNNNQ 385 Query: 292 QCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ-THKVERLALF 348 + +TI DPPR GL++ V ++YISCNP T ++++ S+ + +++L Sbjct: 386 KIDTIIFDPPRKGLETSIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYVLKKLQAV 445 Query: 349 DQFPYTHHMECGVLLTAK 366 D FP T H+EC L+ K Sbjct: 446 DMFPQTSHIECVGLIERK 463 >UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYI0_DESAD Length = 465 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 162/388 (41%), Gaps = 43/388 (11%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLVP-------EVFRSPV-SHYRMRAEFRIWHDGDD 58 +Y AQ K ++ + + P E SP+ YR + EF H D Sbjct: 90 QDIKYPAQTFWKGRQVCETLERIGKIGPDTPGMGEEALPSPLEYGYRNKMEFSF-HGIGD 148 Query: 59 LYHIIFDQQTK--SRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDY------ 110 + F ++ + + S P E + + + + ++ + Y Sbjct: 149 SLKLGFKRRGSETDVLNISSCPLLPEQCADIPALVRDYCAHTNIGAYRHNRGGYWRKLVV 208 Query: 111 -LTTLSNQAVVSLL------YH--KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI 161 + S + ++ LL +H K L L+ + + + + Sbjct: 209 RFSHHSGEMMIHLLTGPARSHHTIKGLGKLLFDNIPQLKSFVHSTRKGRADLATGERLIS 268 Query: 162 ELDQDYIDERLP-VAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYC 219 Q++I E L G E+ YR N+F Q N+ + + ++ D+ +L+C Sbjct: 269 VTGQEHITETLTHADGSEVSYRITPNAFFQTNSKGAEVLYRKSSELAAPKADDVVWDLFC 328 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G+G + +A++ +++ E+++ SV +A+ N A N ++N Q I V Sbjct: 329 GSGGIGMFMAKDVGKMIGIEVSEESVQSAKDNAALNGLENTQYI-------------VGN 375 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGL-DSETEKMVQAYP-RILYISCNPETLCKNLETLS 337 +G+ + + VDPPRSG+ D +K+++ P +ILYISCNP TL ++ + Sbjct: 376 LASEKGLPEDLPHPDMVIVDPPRSGVPDPSLQKLIELGPEKILYISCNPSTLARDAAKME 435 Query: 338 QTHKVERLALFDQFPYTHHMECGVLLTA 365 +K+ER A D FP+T H+E LLT Sbjct: 436 GRYKLERFAAVDMFPHTAHVESIALLTK 463 >UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I245_DESAP Length = 465 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 141/392 (35%), Gaps = 46/392 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 HL Y QL K V+++ + + + + HYR +A F + D L Sbjct: 87 HLLHIDYPEQLRWKTVQVRDALTRLGGLGEVPVANTLGMNEPRHYRNKAHFHVSRDSGRL 146 Query: 60 YHIIFDQQTKSR---IRVDS---FPAASE-----------LINQLMTAMIAGVRNNPVLR 102 + + + D L+ L + LR Sbjct: 147 ALGFLARGSHRVTCFVDADGGSGCLLVQRDLLRVAARAAALLESLRVPLYDWETQRGYLR 206 Query: 103 HKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR----ATK 158 + L + T +V+ + + E+ + A + + NV+ + + Sbjct: 207 NLLLRRAAATGEIMLVLVTGRQNWPGEREFAERLTAEEPGVVSVIRNVNALETRELLGPE 266 Query: 159 TKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLEL 217 ++ + I E L + +R SF Q N + E A + K +++ Sbjct: 267 NRVRAGEPAITEHL----GGLKFRIGPASFFQVNPEQAEKTYEIARLFAGLTGKETVVDA 322 Query: 218 YCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 277 Y G G +L LA V+ E +VA AQ N N I NV+ + A E+ Sbjct: 323 YSGIGTIALFLASRAKSVIGFEALPAAVADAQENALRNGIKNVRFEQGAVEDLLPEWAA- 381 Query: 278 REFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLET 335 + + + +DPPR G + + R++Y+SC P TL ++L Sbjct: 382 -----------RGRRVDVAVLDPPRRGCGPAALEALGRLRPRRVVYVSCAPATLARDLGR 430 Query: 336 LSQ-THKVERLALFDQFPYTHHMECGVLLTAK 366 L++ V ++ D FP T H+EC V LT K Sbjct: 431 LAELGFDVVKVQPVDMFPQTSHIECVVSLTRK 462 >UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=6 Tax=Geobacter RepID=Y1748_GEOSL Length = 438 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 93/377 (24%), Positives = 154/377 (40%), Gaps = 34/377 (9%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRS-----PVSHYRMRAEFRIWHDGDD 58 +HL +Y+AQ K + F + + YR RA+F+I G Sbjct: 80 QHL---RYDAQAEAKERIFVDTLWRFGRVERDAVAPFAVADNPFGYRCRAQFKIRWSGGR 136 Query: 59 LYHIIFDQQTKSRIRVD-SFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 L+ + + + I IN + + + + K+ QID T Sbjct: 137 LHMGFYRRGSHYVIDAPAECVICDPAINLTLRDLRLVLPDFSEP-DKIPQIDAATGEDGH 195 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALR--AQNLNVHLI-GRATKTKIELDQDYIDERLPV 174 ++ + Y + D + A+ R A +HL GR D + +P Sbjct: 196 VLLVVHY---IGDNPGRAADFFRSIQPHLASVTGIHLQCGRKDSIMHVWGVDSLSYTVPG 252 Query: 175 ---AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALAR 230 G+ + F+Q N N ++ AL + G +L+L+CGNGNFSL LA Sbjct: 253 LGDQGRPLSLSFRRGGFSQVNYRQNRVLVSKALHLAGVGPGRRVLDLFCGNGNFSLPLAS 312 Query: 231 NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 290 +++ E PS+ A+ N N I +V+ I + A + T+ + E Sbjct: 313 GGAQLVGVEDYGPSIDDARKNADFNGIGDVEFIAIDAADGTRRLRAAGE----------- 361 Query: 291 YQCETIFVDPPRSGLDSET-EKMVQAYPRILYISCNPETLCKNLETLSQ-THKVERLALF 348 +T+ +DPPR+G E + A RI+Y+SC+P TL ++L L + ++V Sbjct: 362 -HFDTVILDPPRTGARDAVGEVAILAPERIVYVSCDPPTLGRDLGVLRKAGYRVVGSHGV 420 Query: 349 DQFPYTHHMECGVLLTA 365 D FP T+H+E LL Sbjct: 421 DMFPQTYHIESVTLLIR 437 >UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M703_9BACT Length = 454 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 154/393 (39%), Gaps = 53/393 (13%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV----FRSPV-SHYRMRAEFRIWHDGDDL 59 L QL K + ++ + SPV YR +A F + Sbjct: 76 QLQHASRSLQLELKSLIVEDSLRRLGGFDLPEKISCLPSPVQWGYRNKASFPVRRTASGE 135 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-----------LRHKLFQI 108 F T + +++ P + QL + V++ LRH + + Sbjct: 136 TTGFFKMGTHDIVPIETCPLVCDQAAQLYGTLRGLVQDGGFSAYDEKTGRGWLRHIVVRA 195 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALR-AQNLNVHLIGRATKTKIELDQDY 167 +T + + L+ K D ++ +LRD R Q+ L G A Sbjct: 196 ---STYGSGLLALLVVTSKPD---QEGMASLRDLWRYLQSRQPALSGLALSINPSRGNRI 249 Query: 168 I-DERLPVAGKE--------MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELY 218 I DE +PVAG + SF Q N A ++ ++A + LELY Sbjct: 250 IGDETVPVAGTDRVHECLGPFRLEYDGTSFFQVNTAQAARLFDYASSLVPDGSRT-LELY 308 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 CG G+ + LAR V A EI P+V A+ N++ N++ NV++ AE+ + + Sbjct: 309 CGVGSLTAFLARKSRAVTAAEIWPPAVEMARKNMSGNNLTNVELRLSPAEKLPSDLFEGQ 368 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETL 336 + + VDPPR+G D E + + I+Y+SCNP TL ++ L Sbjct: 369 ---------------DCLVVDPPRTGCDGEMLARLAGTSIKSIVYVSCNPATLARDAARL 413 Query: 337 -SQTHKVE--RLALFDQFPYTHHMECGVLLTAK 366 S +++ + FD FP T H+E LL K Sbjct: 414 QSAGYQLVTSSVRAFDMFPQTSHVETVALLCRK 446 >UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1APX5_PELPD Length = 446 Score = 270 bits (691), Expect = 6e-71, Method: Composition-based stats. Identities = 106/381 (27%), Positives = 157/381 (41%), Gaps = 41/381 (10%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPF----SDLVPEVFRSPV-SHYRMRAEFRIWHDGDD 58 +H+ Y QL EK + +LV +V SP+ YR R +F++ G + Sbjct: 84 QHIA---YHRQLEEKRRIFADALWRGARAPGELVADVVASPLTYGYRSRVQFKLHGAGPN 140 Query: 59 LYHIIFDQQTKSRIRVDS-FPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 L + Q T P A +IN+++ ++ + P K+ QI+ L Sbjct: 141 LRIGFYRQGTHFVEDAGQGCPIALPVINRILGSLREMLPAFPDPT-KIPQIN-LECAEKG 198 Query: 118 AVVSLLY----HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYID---- 169 AVV + Y H+ +R+ A L A GR + + D + Sbjct: 199 AVVIVNYIGDDHQGAKAFFRERAAQLEQATALY----LQTGRKSTLQKVFGDDLLQYSQE 254 Query: 170 -ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLA 227 E + YR F Q NAA N +L + + D +L+LYCGNGNFSL Sbjct: 255 GESSTAPACSLTYR--PGGFAQVNAAQNSALLRLVREFADCRRDDQILDLYCGNGNFSLP 312 Query: 228 LARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 287 LAR V E S+AAA++N N I NV+ I A + G Sbjct: 313 LARGVAAVTGIEEYGDSIAAARHNARLNGITNVEFICADAAAGAGKLMG----------- 361 Query: 288 LKSYQCETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL-SQTHKVERL 345 + TI +DPPRSG E + + +I+YISC+P TL ++ L + + V Sbjct: 362 -DGRRFPTIILDPPRSGAADLLEHIPRLGADKIIYISCDPSTLARDCGVLFGKGYTVVSS 420 Query: 346 ALFDQFPYTHHMECGVLLTAK 366 D FP T H+E LL + Sbjct: 421 VPVDMFPQTFHLESVTLLRRR 441 >UniRef50_A9BFH8 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BFH8_PETMO Length = 387 Score = 270 bits (690), Expect = 6e-71, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 159/392 (40%), Gaps = 58/392 (14%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP-----VSHYRMRAEFRIWHD-GDDLYH 61 YE QL K + S+ + P + + YR + E+ ++ D Sbjct: 17 HINYEEQLKIKEKNVLSLF-DQYQIKPNNYHGITPSVDIYEYRNKMEYSFGNEYKDGPLV 75 Query: 62 IIFDQQTK--SRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQI 108 + + K N ++ ++ LR+ + Sbjct: 76 LGLRGKGKKFDVYYTKDCKLVDYDFNNIVIKTREFFLKKNIPFRNYKNHSGFLRNLGIRK 135 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIG-------------R 155 T + +++L+ LD+ + QE E ++ + NL +++ + Sbjct: 136 GLKT---GEILLNLVTS--LDNTYYQEVETWKEEMLNTNLKGNIVSIIQSKTESKANVVK 190 Query: 156 ATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL 215 A + +I +DY E++ ++ ++ SF Q N + + AL + S + Sbjct: 191 ADEMEILYGRDYFYEKI----LDLTFKIGPFSFFQTNTKGTEVLYQTALSYAENS-DVVY 245 Query: 216 ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN 275 + Y G G SL LA +V EI K +V AA+ N N+I+NV+ + ++F + + Sbjct: 246 DFYSGTGTISLLLANKAKKVYGIEIIKEAVEAAKQNAILNNINNVEFVNKDVKDFVKQQS 305 Query: 276 GVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNL 333 + + I VDPPR+GL K ++ + +I+YISCNP+TL NL Sbjct: 306 STE-------------KPDYIVVDPPRAGLHPNLIKFIKTQQFNKIIYISCNPKTLIPNL 352 Query: 334 ETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 + LS + + L D FP+T H+E VL+T Sbjct: 353 KELSDLYTISDFHLVDMFPHTDHVESVVLMTR 384 >UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDB5_9FIRM Length = 431 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 72/372 (19%), Positives = 143/372 (38%), Gaps = 34/372 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIF 64 L Y QL K ++ + + P + +YR +A+F + + + Sbjct: 81 QLQHMSYAYQLDYKYKHVKKLFEGIE-VKPILGMDNPWYYRNKAQFPVKIKDGKVQMGFY 139 Query: 65 DQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV--LRHKLFQIDYLTTLSNQAVVSL 122 Q + + +IN++ + + + LRH + + +++ V Sbjct: 140 RQHSNDVVTCKECKIQDHVINEVFSFIQKKITLKMAQDLRHVFIR----HSSTDEIQVVF 195 Query: 123 LYHK-----KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGK 177 + L D+ + + + N + K+ DYI E Sbjct: 196 IGKNEKNIISLSDQLKNTFANITSIVFNYNTRNDNVILGDTYKVLYGNDYIIEECLGNKV 255 Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVL 236 ++ ++ +F Q N + A+ + + +++Y G G +A++++ V+ Sbjct: 256 KLHFK----AFFQVNPKQMEVLYSQAIKAANLTGNETCIDMYAGTGTIGMAVSQHAKSVI 311 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 EI K +V A N NH+D+ + A +F D K + + I Sbjct: 312 GVEIVKEAVDNANDNTKMNHLDHCHYVCQDATDFAH--------------DHKEDKIDVI 357 Query: 297 FVDPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPY 353 F+DPPR G+ K + +I+Y+SCNP+TL ++L+ + ++ E + D F Sbjct: 358 FIDPPRKGMTENGIKDTITMQPDKIVYVSCNPKTLSRDLKIFKEYGYQCEYVQPVDMFCQ 417 Query: 354 THHMECGVLLTA 365 T +EC LT Sbjct: 418 TIGLECVAKLTK 429 >UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=5 Tax=Geobacter RepID=Y1452_GEOSL Length = 495 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 81/385 (21%), Positives = 151/385 (39%), Gaps = 38/385 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPF-----SDLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y QL K + + + ++++ + HYR A+ + Sbjct: 98 PLIVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLHYRNSAKLVVSGTFRRP 157 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQI 108 I+ + + + + + P LIN+++TA+ G+ + +LR+ + +I Sbjct: 158 VIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTGSGLLRYLVVRI 217 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYI 168 T + V++ + +E A+ L+ ++ + V + + I +DY Sbjct: 218 SERTGTAMAVFVTVERNY---NEIHHLAKHLQQSVPQVEVVVQNVNSSEGNVILGQRDYF 274 Query: 169 DER---LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNF 224 R L + + SF Q N+ + E + + K +++LYCG G Sbjct: 275 LTRQHALTEELGGIRFTISPRSFFQVNSGGARIIYETVRQWSSLTGKESVVDLYCGIGGI 334 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 +L LA V E+ + +V A+ N N I N A E + + E Sbjct: 335 ALFLAGTAREVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDAAELIEELVEEGE----- 389 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETLSQ-THK 341 + + + ++PPR G D+ RI+Y+SC P TL ++L+ L+ + Sbjct: 390 -------RLDLVVLNPPRKGCDAGVLNKVAAAGPARIVYVSCAPATLARDLDILAGLGYA 442 Query: 342 VERLALFDQFPYTHHMECGVLLTAK 366 R+ D FP T H+E LL K Sbjct: 443 TLRVQPVDMFPQTPHVENIALLVKK 467 >UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25 Tax=Pseudomonadaceae RepID=RUMA_PSEPF Length = 461 Score = 269 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 156/371 (42%), Gaps = 33/371 (8%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSH----YRMRAEFRIWHD--GD 57 +HLP QLA K L ++ + PE + +P++ YR RA + D Sbjct: 103 QHLPH---NEQLALKQRMLAEQLSRVAGAEPEEWAAPLTGPEFGYRRRARIAVRWDSKAK 159 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 L ++ + + P + + +MT + +R K + ++ S Sbjct: 160 KLEVGFRAAGSQDIVAISECPVLVQPLQPIMTRLPEMLRRLS----KPQALGHVELFSGS 215 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGK 177 ++ LL H + + L+D + L G ++ D + L Sbjct: 216 SLAVLLRH--MAPLSEADLTILKDFCAFHEAQLWLHGEGEPQPVD-DAQSLGYHLEQWDL 272 Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVL 236 ++ YR F Q NA +N M+ AL+ K + + +L+L+CG GNF+L LA+ V+ Sbjct: 273 QLAYR--PGDFIQVNAGVNEAMVAQALEWLKPTADERVLDLFCGLGNFALPLAKAAREVV 330 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 A E + V A N A+N++ N + + + +Q + + Sbjct: 331 AVEGVQTMVDRAAANAASNNLHNTKFFQ---ADLSQPLTDAEWI---------GNGFSAV 378 Query: 297 FVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKN-LETLSQTHKVERLALFDQFPYT 354 +DPPR G K+ R++Y+SCNP TL ++ +E + Q ++++R + D FP T Sbjct: 379 LLDPPRDGAFEVVRKLAALGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQT 438 Query: 355 HHMECGVLLTA 365 H+E L A Sbjct: 439 AHVEAMALFEA 449 >UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A5X0_NATTJ Length = 454 Score = 268 bits (684), Expect = 4e-70, Method: Composition-based stats. Identities = 75/380 (19%), Positives = 147/380 (38%), Gaps = 35/380 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y+ QL K + + M + L P + +YR + + + G Sbjct: 87 QLQHLSYKGQLQYKENLVANQMKKVAGLKNPRVLPAIGMESPWYYRNKFQIPVKPIGGKP 146 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNP------VLRHKLFQIDYLTT 113 +F +++++ + +D N+++ M V + L+H + ++ T Sbjct: 147 RLGLFQKRSQNLVEIDHCMIQKHGNNEVLEKMRNLVDSYEKEFYNCELKHIISRVGDKTD 206 Query: 114 LSNQAVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYID 169 V+ + + + + + L ++ N + K ++Y+ Sbjct: 207 QVQLTFVTGSEKIDNKQMILEPLKNGMANLVGIVQNINKKPRGNVLGDRFKTLWGREYLM 266 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELYCGNGNFSLAL 228 + L + +R +F Q N + + + ++ K +++++YCG G SL Sbjct: 267 DNL----LDKKFRVSAGAFYQVNPSQTEVLYQKVFELCKLKGVENVMDIYCGIGTISLLA 322 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 A N +V+ EIA+ +V A N N +N + AE+ + Sbjct: 323 AENASKVVGIEIAEEAVKDANINKNINGQENAWFYQARAED------------EKTESII 370 Query: 289 KSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ-THKVERL 345 + Y E + +DPPR G D + +I Y+SCNP TL +++ L + + E Sbjct: 371 QDYSPEIVIMDPPRKGCDENLLTSLDWIRPEKIAYVSCNPATLARDVGKLIEFGYYPELF 430 Query: 346 ALFDQFPYTHHMECGVLLTA 365 D FP T H+E +LT Sbjct: 431 QPVDMFPQTTHIEVICILTK 450 >UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5A4_9BACT Length = 508 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 84/398 (21%), Positives = 152/398 (38%), Gaps = 57/398 (14%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV-----SHYRMRAEFRIWHDG-------- 56 YE QL K ++ + + FR + YR + EF + Sbjct: 127 PYEEQLKAKQKQVHDQLERIGKIELPEFRPIMGSEKTYEYRNKLEFGCSNKRWLTWEEVT 186 Query: 57 -----DDLYHIIFD--QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV----LRH-- 103 D + I F ++ +L NQ+ + ++ + LR Sbjct: 187 SGVKYDHMNAIGFHITGAFDKIYPIEKCWLMDDLCNQIRNCIRDYAIDHDISFFDLRAQT 246 Query: 104 -KLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK-- 160 L I + + + +V L+ K ++ Q A L + + + K Sbjct: 247 GLLRDIMIRSANTGEWMV-LVQFKFQEEGDEQRAHGLLQHVADSFPQITSLLYVDNQKCN 305 Query: 161 ---------IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK 211 + +D+I E + ++ ++ SF Q N + A + + + Sbjct: 306 DTFGDQTVVVFKGKDHITETM----GDLKFKVAAKSFYQTNTNQAYHLYSVAREFAQLTG 361 Query: 212 GDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF 270 +L+ +LY G G + +AR V+ E + ++ A+ N AAN I N Q ++ Sbjct: 362 KELVYDLYTGTGTIANFVAREAREVIGIEYVEDAIKDAKVNSAANDIHNTQFYAGDMKDI 421 Query: 271 TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPET 328 EF G + + I DPPR+G+ + + + A RI+Y+SCNP T Sbjct: 422 L-----TEEFIAEHG------RPDVIITDPPRAGMHPDVVRTILGAAPQRIVYVSCNPAT 470 Query: 329 LCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++L+ L + +KV + D FP+T H+E VLL + Sbjct: 471 QARDLQMLDEQYKVMAVQPVDMFPHTPHVENVVLLEQR 508 >UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desulfobacteraceae RepID=A8ZZY9_DESOH Length = 471 Score = 267 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 80/403 (19%), Positives = 149/403 (36%), Gaps = 66/403 (16%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L Y+ QL K ++ + + P + PV YR + EF L Sbjct: 92 LQILDYDKQLDCKHEQVADALRHIGLVENVPVHPVMPADPVWGYRNKMEFSFADRRWLLP 151 Query: 61 HIIFDQQ--------------TKSRIRVDSFPAASELINQLMTAMIAGVRNNPV------ 100 + + I VD+ E N ++ + A R + V Sbjct: 152 EEMEMENIDTSFALGLHVPGTFHKVIDVDACLLLPEPGNAILGDVRAYARASGVPAYGLK 211 Query: 101 ----------LRHKLFQ----IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQ 146 LRH + ++ +T ++ ++ + L D + + Sbjct: 212 SHQGFWRFLMLRHSVAHDNWMVNIVTAAEDRRLL-----QPLADLLADRYPEVVSVVNNI 266 Query: 147 NLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDV 206 + + + +I +RL + NSF Q N ++ A + Sbjct: 267 TARKAGVAQGEYEILLHGAPFISDRL----GRFSFDISANSFFQTNTRGAERLYTVAREY 322 Query: 207 TKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRM 265 + +++LYCG G ++ L+ V+ EI +A A N N++ NV+ + Sbjct: 323 AGLTGSQTVVDLYCGTGTIAIWLSGAAKEVIGLEINDSCLADAVNNCRTNNVSNVRFVAG 382 Query: 266 AAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEK--MVQAYPRILYIS 323 +E ++ + + + +DPPR+G+ + + + A PRI+Y+S Sbjct: 383 DVKETLPRLDC---------------RADVLVIDPPRAGMHKDVVEQVLAMAPPRIVYVS 427 Query: 324 CNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 CNP TL +++ LS+ + V + D FP+T H+EC L K Sbjct: 428 CNPATLARDVAMLSEAYTVAEVQPVDMFPHTPHIECVARLDKK 470 >UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desulfuromonadales RepID=Q3A1Z9_PELCD Length = 489 Score = 267 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 157/383 (40%), Gaps = 48/383 (12%) Query: 11 YEAQLAEKVVRLQSMMAPF-----SDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Y QL K +++ + + +D+ P + YR A+ + + ++ Sbjct: 120 YADQLDFKQTKVREALNAYPQLKGTDISPILAAEEPLGYRTSAKLAVARRNGRIVIGLYR 179 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDYLTTL 114 + + + + P L+N+++ + + +LR+ L ++ T Sbjct: 180 RGSHEVADIGACPLHHPLVNRIVEVVREEIARQDIYLYNPVTRRGLLRYLLIKVSPAT-- 237 Query: 115 SNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPV 174 +A+V+ + ++ A+ + + + ++V A+ + + + E L + Sbjct: 238 -GKAMVTFVTAQREYKRITALAKWVARKIP-EVVSVQQNVNASSGNVIMGR----ETLRM 291 Query: 175 AGKEMIY--------RQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFS 225 G+ ++ R SF Q N A ++ + L+LYCG G + Sbjct: 292 VGQPDLFDQVGNIRLRISPTSFFQVNHAQAARIYALVRRWAALESHEFALDLYCGIGGIA 351 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 L LA++ RV+ E+ + +V AQ N A N++ N + + E Q + Sbjct: 352 LHLAQDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRFLAGDTAELLQDL----------- 400 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMV-QAYPR-ILYISCNPETLCKNLETLSQ-THKV 342 + T ++PPRSG D E + V Q PR I+Y+SCNP+TL ++L L + ++ Sbjct: 401 -IVDLPSLATAVLNPPRSGCDVEVLQAVTQLQPRTIIYVSCNPDTLARDLAELQKLGYRT 459 Query: 343 ERLALFDQFPYTHHMECGVLLTA 365 + D FP T H+E L Sbjct: 460 AEIQPVDMFPQTAHVESVARLVK 482 >UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M217_GEOSF Length = 437 Score = 267 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 153/373 (41%), Gaps = 30/373 (8%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLVPEVF-----RSPVSHYRMRAEFRIWHDGDDLYH 61 +Y +Q+ EK + ++ + + PE YR R + ++ + G Sbjct: 80 QHVEYSSQIMEKTLIFADLLWRAARISPETVLPLLRAPEPYGYRSRVQLKVNYQGGKTRL 139 Query: 62 IIFDQQTKSRIRVD-SFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 + ++ + + + IN + ++ + P + + QID + ++++ Sbjct: 140 GFYRPKSHQVVDIPGHCAITHKSINDTLESLRLLMEGCPDPGN-ISQID-IARGDDESIS 197 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR-ATKTKIELDQDYIDERLPV----A 175 ++ H + +E L +L + R T +++ R+ Sbjct: 198 VIVNH--AGASVAEVSEYLLQHREISDLIGSMFIRHKNSTTSIFGAEHLSYRISGNTLPG 255 Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDR 234 G E +++F+Q N N+Q++ D + K +L+LYCGNGNFS+ LA Sbjct: 256 GSEKTLFFSKDAFSQINYQQNMQLIRVVSDFAALTGKEKVLDLYCGNGNFSIPLADKAAH 315 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 V E +PS+A A+ N N + N+ + + + RE + Sbjct: 316 VTGFEGYEPSIADARKNAEWNGVTNISFHCSDSAAAVKKLAAARE------------TFD 363 Query: 295 TIFVDPPRSGLDSETEKM-VQAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFP 352 + +DPPR+G + RI+Y+SC+P TL ++L L + +V + D FP Sbjct: 364 VVVLDPPRNGAAEVMHHIQALNADRIIYVSCDPATLARDLGILKKNGFQVINIQGVDMFP 423 Query: 353 YTHHMECGVLLTA 365 T+H+E LLT Sbjct: 424 QTYHLESVTLLTK 436 >UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWS7_9BACL Length = 451 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 83/384 (21%), Positives = 151/384 (39%), Gaps = 40/384 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPF------SDLVPEVFRSPVS-HYRMRAEFRIWHDGDD 58 L YE QL K L + LV + SPV+ YR + +F + Sbjct: 85 LAHVSYEKQLEYKRTILLDAFDKYYRLPKPDKLVLKTLASPVTEGYRNKNQFPLAVRNGR 144 Query: 59 LYHIIFDQQTKSRIRVDSFPAASE---LINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLS 115 + ++ + + + ++ A E I L ++ + K + + Y+ T + Sbjct: 145 VIAGLYKEGSNDLVEINEDLALHENGNKITNLAKKLLGKYKVEISTNKKNYGVKYIATRT 204 Query: 116 ----NQAVVSLLYH-------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELD 164 V+ + + K+ +E ++E L N HL+ T++ Sbjct: 205 SFYNGDVQVTFVANTDKIKNMDKVVNELKRERIVKSIILNITNDKDHLVM-GTESVTLYG 263 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGN 223 DYI E++ + Y SF Q N ++ + ++ + D+ L+ YCG G Sbjct: 264 SDYIVEKI----GDTKYELSAKSFFQLNPPATKKLYDKVVEFAALKETDVVLDAYCGVGT 319 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 ++RN V +I ++ A N+ N++ N + A + Sbjct: 320 IGQYVSRNCKEVYGVDIIPAAIEDANDNVKLNNLKNCTYVAGDANKIVPRWKK------- 372 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQTHKV 342 K + VDPPR GL + ++ +I+Y+SCNP TL ++L+ L++ +K+ Sbjct: 373 -----KGINFDVAIVDPPRVGLGPLAKNLLAVEAKKIVYVSCNPSTLARDLKVLTRKYKI 427 Query: 343 ERLALFDQFPYTHHMECGVLLTAK 366 R+ D FP T +E V L K Sbjct: 428 RRIQPVDMFPGTAAVEAVVELIRK 451 >UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus RepID=A8YU02_LACH4 Length = 450 Score = 266 bits (681), Expect = 8e-70, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 154/383 (40%), Gaps = 40/383 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMA--PFSDLVP-EVFRSPVS-HYRMRAEFRIWHDGDDLYH 61 L +Y+ QL K ++ +++ ++ E SP YR +A+ + L Sbjct: 82 LAHIKYDKQLDFKRNQVVNLLKKAHLENIEVGETLASPEEVGYRNKAQVPVREVNGQLEI 141 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDY 110 F + + + + F I++++ A+ +R NN +R+ + Sbjct: 142 GFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKYKVPAYDEINNNGEVRYLEVR--- 198 Query: 111 LTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELD-QDYI- 168 + + + +V L+ K + A + L L KT + L +DY+ Sbjct: 199 RSKSTGEMMVILVCLHKDFMQLPNVAAEVSQIPGVSGL--ILNHNPKKTNVILGPKDYLV 256 Query: 169 --DERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFS 225 ++++ ++ +R SF Q N+ ++ A+ D+ ++ Y G G Sbjct: 257 FGNDQITDQIGDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGTIG 316 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 L++A++ V E+ + ++ A+ N N I N + AEE Sbjct: 317 LSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIMPRW----------- 365 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKV 342 + + +FVDPPR GL E +I+YISCNP TL ++L+ + +++ Sbjct: 366 -AKSGLKTDVVFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQEKSYEF 424 Query: 343 ERLALFDQFPYTHHMECGVLLTA 365 R+ D FP T H+E +L Sbjct: 425 NRIDPVDMFPQTPHVESVTVLER 447 >UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 Tax=Legionella RepID=RUMA_LEGPL Length = 444 Score = 266 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 83/375 (22%), Positives = 155/375 (41%), Gaps = 34/375 (9%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP----VSHYRMRAEFRIWH-DGDDLY 60 L E Q+ K L +++ + P+ SP +YR +A + Sbjct: 88 LQHMSAEEQIRFKQSHLLDLLSRYGHTAPQTVLSPLTSHPWNYRNKARLSTRFVEKKQST 147 Query: 61 HIIFDQQTKSRI--RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + F ++ R ++ P + I+ + + + + + + QI+ + A Sbjct: 148 MVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLI-DTMEDKQCIAQIEVAAGDNEVA 206 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL----DQDYIDERLPV 174 ++ + L Q+ +R + V L + Y+ LP Sbjct: 207 LI----FRNLTPLTEQDESKIRKFAQQFQYKVFLQPGGLDSVFCFYPSDAHAYLSYELPD 262 Query: 175 AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFD 233 ++ ++ N FTQ NA +N +M++ A+ + + D +L+L+CG GNFSL +A++ Sbjct: 263 Y--QITFQFHPNDFTQVNAELNRKMVKQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCS 320 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 RV+ E + V A N +NHI NV ++ + N L + Sbjct: 321 RVIGVEGNRNMVERAYMNAKSNHITNVDFYAANLDDVMEVRN------------LVNTSF 368 Query: 294 ETIFVDPPRSGLDSETEKMVQAYP-RILYISCNPETLCKNLETL--SQTHKVERLALFDQ 350 + +DPPRSG +++ P RI+Y+SCNP TL ++ + L + + + + D Sbjct: 369 SKVLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDM 428 Query: 351 FPYTHHMECGVLLTA 365 FP+T H+E L Sbjct: 429 FPHTAHVESIALFQK 443 >UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UYU1_9AQUI Length = 408 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 77/367 (20%), Positives = 155/367 (42%), Gaps = 42/367 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFS----DLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 YE Q+ K L+ + D + + +YR R +F+ D Sbjct: 76 FQHINYEKQVEIKKEILEETLQRIGKINKDTDKVIPSANPFNYRNRVQFKF----DGKNF 131 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVS 121 + ++ + ++S A + IN L+ + +NNP ++ ++ N+ ++ Sbjct: 132 GFYKLKSNEVVDIESCDIADKNINNLIPTLKNLAKNNP----QVEELHIFHHPDNKPMLK 187 Query: 122 LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIY 181 ++ L + E L D + V++ + K + + + R + Y Sbjct: 188 IV----LKENLFMNIENLLDTF--AGIGVYIGNKRVKLE---GKSFTFYR----AGKFNY 234 Query: 182 RQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIA 241 R +SF Q N +++ + + ++YCG G F+L ++ +V E + Sbjct: 235 RVSIDSFFQVNKYQLENIVDEVISEIPKDSQCIGDIYCGVGLFTLPASKKAKKVFGIEAS 294 Query: 242 KPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPP 301 K +V AQYN+ ++I N + + E+ + G Y +T+ DPP Sbjct: 295 KSAVKDAQYNVKVHNIGNAKFYQKVVEKSADIIFG--------------YNPDTLIFDPP 340 Query: 302 RSGLDSETEK---MVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHME 358 R+G+ + +++ RI+Y+SCNP T +++ LS+ +++++ L D FP THH+E Sbjct: 341 RTGIPKNIIQKLLQLKSLKRIIYVSCNPSTASRDINLLSEKFELKKVKLIDMFPQTHHIE 400 Query: 359 CGVLLTA 365 +L Sbjct: 401 SIFVLDK 407 >UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopobium RepID=C8WAE3_ATOPD Length = 441 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 84/377 (22%), Positives = 145/377 (38%), Gaps = 44/377 (11%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPE---------VFRSPVSHYRMRAEFRIWHDGDDLYH 61 YE QL EK + S + P+ V YR + E +G+ Sbjct: 86 YEQQLVEKRNSVVSALERIGHFSPDDVSELVKDIVSPGEPWGYRNKIELAFKRNGNKTLV 145 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKL--FQIDYLTTLSNQAV 119 ++ + +R+ P + + + A+ + + H+L +I + + + Sbjct: 146 GMYAPNGQDIVRIKDCPLLDKSNQKAVGAVSGAL-SYLSGSHELDVERIGIRVSRRTKEL 204 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAG--- 176 L+ Q A L DA++A ++ + +K + + ERL +G Sbjct: 205 EVALWTAPSGFPRAQVARVLSDAVKATSVVRVMTKGPSKARRVVG----VERLSGSGSWS 260 Query: 177 ---KEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNF 232 + SF Q N +++E L D ++LYCG G F+L LA+ Sbjct: 261 ELIDGQKMQLSAPSFFQVNTKGAEKLVELVLSGLDVQPDDEAMDLYCGAGTFTLPLAKRA 320 Query: 233 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 V A E P+V + N+ +DNV + A G + Sbjct: 321 GFVSAVEAYGPAVRDLRRNLELAKLDNVDAVGGDA-----------------GREFPDTD 363 Query: 293 CETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQ--THKVERLALF 348 + I VDPPR+GL + + + P I Y+SC+P TL ++L+ + ++K + Sbjct: 364 ADVIIVDPPRAGLAPDVIQQLSKQPARAIAYVSCDPATLARDLKRFVEIGSYKPVSVTPV 423 Query: 349 DQFPYTHHMECGVLLTA 365 D FP T H+E LL Sbjct: 424 DLFPQTFHVENVCLLKR 440 >UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0G9_UNCTG Length = 449 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 154/380 (40%), Gaps = 36/380 (9%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP-VSHYRMRAEFRIWHDGDDLYHIIF 64 YE+Q+ K + ++ + ++ SP + HYR + EF +++ + Sbjct: 84 FQNISYESQIKYKQEYISELLNFAGVKISKILISPQIWHYRNKMEFSFFNNKGIADLGLH 143 Query: 65 DQQ-TKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQIDYLT 112 + + V A + Q++ + N RH + + Sbjct: 144 CKGMFNRYVSVPPCFIADKGFLQVVETVKRFANGNNFSVYNNKTHEGFFRHLVLRKAGNN 203 Query: 113 TLSNQAVVSLLYHKK---LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYID 169 V++ + + L+ ++ +E N A + + + +I Sbjct: 204 NQFLINVITNVVDCESVFLEPLIKELSEFSCSIYWTSNGRKSDAVLADRLTLMCGKPFIT 263 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLAL 228 ERL + GK+ + SF Q N+ + L + SK +L +LYCG G +++ Sbjct: 264 ERLNIGGKDYFFDISPFSFFQTNSKATEILYTEILRLLNPSKYTVLLDLYCGTGAIGISM 323 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 A N RV+ E ++ A+ N AN++ N + AE++ + Sbjct: 324 AHNVKRVIGVECIGQAIDNAKENALANNVFNAEFYASDAEDWIK---------------E 368 Query: 289 KSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQT--HKVER 344 + + VDPPRSGL + K + RI+Y+SCNP TL ++L+ +++ K++ Sbjct: 369 NKSCFDAVVVDPPRSGLTKDIIKFLLESKAKRIIYVSCNPSTLARDLQLITENSKCKIKE 428 Query: 345 LALFDQFPYTHHMECGVLLT 364 + D FP T+H+E VLL Sbjct: 429 IIPVDMFPQTYHIETVVLLE 448 >UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBR7_9FIRM Length = 458 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 161/385 (41%), Gaps = 44/385 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMR--AEFRIWHDGDDLYHI 62 L Y AQL K ++Q ++ + + + + YR + A F + G + Sbjct: 91 QLQHVDYPAQLDWKKEKVQQLLGRYGRVHDVLGMAEPWAYRNKVIATFSLSKKGK-VIAG 149 Query: 63 IFDQQTKSRIRVDSF----PAASELIN---QLMTAMI----AGVRNNPVLRHKLFQIDYL 111 I+++ + + S P A +++ +LMT + + ++RH L ++ ++ Sbjct: 150 IYEEDSHQLVAYSSCWIQDPIAEKILATVCELMTELRIEPYDEDQRTGLVRHCLIRVGHV 209 Query: 112 TTLSNQAVVSLLYHKKLDDEWRQEAEALRDA-------LRAQNLNVHLIGRATKTKIELD 164 + + +V L+ + +Q + LR + N + ++ ++ + Sbjct: 210 SR---EVLVCLVCASPIFPARKQLIQRLRQRHPEITTIVMNVNSRNTSVVLGSQERVLVG 266 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGN 223 I + L + + SF Q N+ + A+++ + K +L+ YCG G+ Sbjct: 267 TGKIQDEL----CGLKFSIAAKSFYQINSVQTEVLYGKAMELANLTGKERVLDAYCGIGS 322 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 SL A+ V+ E+ SV A N NH+ N + A F + Sbjct: 323 ISLVAAKAAKEVVGVEVNPVSVTNAIENARMNHLRNAWFVEADAGLFMEQ---------- 372 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEK-MVQAYP-RILYISCNPETLCKNLETLS-QTH 340 + + +F+DPPR+G D K + + P RI+YISCNP T ++L L+ + + Sbjct: 373 --AAREGQAYDVVFMDPPRAGADERFLKSLCRLNPDRIVYISCNPSTQARDLRHLTHEGY 430 Query: 341 KVERLALFDQFPYTHHMECGVLLTA 365 +V + D FP T H+E VLL Sbjct: 431 QVRTIVPVDLFPMTSHVETIVLLQR 455 >UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=12 Tax=Chlorobiaceae RepID=Y009_CHLTE Length = 483 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 75/400 (18%), Positives = 153/400 (38%), Gaps = 63/400 (15%) Query: 11 YEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWH----------- 54 YEAQL K ++ + D+ P + HYR + EF + Sbjct: 100 YEAQLRYKHKKVTDSLEHIGGFESPDVRPVLAAPDALHYRNKVEFSCSNMRYLLQSEIDS 159 Query: 55 ---DGDDLYHIIFDQQTK--SRIRVDSFPAASELINQLMTAMIAGVRNNPVL-------- 101 + + F + +D+ A E +N+++ + + Sbjct: 160 DQLAKPKTFALGFHAPGNFEKVLDLDTCYLAKECMNRVLNVLRDFAIERGLEPYAAKAHE 219 Query: 102 ------------RHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLN 149 RH+ ++ +T+ ++A++ L + L+ ++ L L Sbjct: 220 GYLRNLMLRYSERHEQLMVNIVTSWYDKALMQALKER-LEAAMPEQQMTL---LNNVTTR 275 Query: 150 VHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKG 209 + + + + Y+ ERL ++ +R NSF Q N + + + V Sbjct: 276 KNTVATGEQEYVISGDGYVTERL----GDLDFRISANSFFQTNTRQAETLYDQIIAVGGI 331 Query: 210 SKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE 268 + D + +LYCG G +L LAR+ + + E+ + +V A+ N N + N + Sbjct: 332 TPEDTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVKDAEMNAELNGLSNTVFFQAD-- 389 Query: 269 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNP 326 ++ F+ +Q + I DPPR+G+ + + RI+Y+SCNP Sbjct: 390 --------LKNFHAMQEALEPYAKPRIIVTDPPRAGMHPKALDTMLKLQPERIVYVSCNP 441 Query: 327 ETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTA 365 + L ++ + + ++ +++ D FP T+H+E Sbjct: 442 DNLARDGKEIAARGYRMTSAQPVDMFPQTNHIETVACFER 481 >UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81 Tax=Gammaproteobacteria RepID=RUMA_VIBSL Length = 442 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 151/369 (40%), Gaps = 27/369 (7%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV---SHYRMRAEFRIWHDGDDLY- 60 HL Y +Q+ K L +M+ + EV V S YR RA ++ D Sbjct: 92 HLQHLGYSSQVEHKSQSLTHLMSKYQTANTEVALPIVGDESGYRRRARISLFVDKKTQLL 151 Query: 61 -HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 +Q+K + +N L+ + + + L L ++ + + + Sbjct: 152 QFGFRKKQSKQIENITDCAVLDPRLNVLLPKLKSLLNTFSSLT-SLGHVELVLGDTGPVM 210 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 V L + K L ++ Q L + + ++ + K + G + Sbjct: 211 V-LRHLKPLVEKDEQALMTLMTLAKEEGATLYSMPETDKLVRLVGDAP---SYSETGVTL 266 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLAT 238 + N F Q N +N QM+ A++ + + +L+L+CG GNFSL +A+ V+ Sbjct: 267 PFE--PNHFIQVNQKVNQQMVAQAIEWLEPQADERVLDLFCGLGNFSLPIAQQSAFVVGV 324 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E V A N A N + N + + EE + +E + + + + Sbjct: 325 EGVDEMVQQATANAALNQLSNTEFYQANLEEDLSSQLWAKE------------KFDKVLL 372 Query: 299 DPPRSGLDSETEKM-VQAYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHH 356 DP R+G +++ R++Y+SCNP TL ++ E+L Q +++ +L + D FP+T H Sbjct: 373 DPARAGASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGMLDMFPHTSH 432 Query: 357 MECGVLLTA 365 +E L Sbjct: 433 LESMALFIK 441 >UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDG7_HELMI Length = 490 Score = 264 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 80/420 (19%), Positives = 148/420 (35%), Gaps = 72/420 (17%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHD---- 55 L Y AQ K ++ + L V + YR R + + + Sbjct: 81 QLQMIDYPAQCRVKTEGVRDALRRLGRLENVPVGEIVGAANPWRYRNRVQMHLRREAGAP 140 Query: 56 GDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-----NPVLRHKLFQIDY 110 G L + + + D P E ++ A+ + +RH + + Sbjct: 141 GKPLQMGYYRLSSHELVENDECPLLPESFPPVLKALRRHLPEIDPAGELPIRHVVLKTTT 200 Query: 111 LTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQN----------------------- 147 + + ++ L++ WR+ L L + Sbjct: 201 PLERAGEMMLILVFS-AWRSAWRKAVGDLAKRLMGEGATGEGATGEGATGEGATGEGATG 259 Query: 148 ----------LNVHLIGRATKTKIELDQDY-------IDERLPVA-GKEMIYRQVENSFT 189 +++++ K L DY ERL + SFT Sbjct: 260 EGLTGERYNLVSLYVNVNEKKEGEVLGPDYPFHVSKPGKERLTDYLPGGLQIEVGPASFT 319 Query: 190 QPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAA 248 Q N + + +V + + +++ YCG G SL LAR+ RV+ E +V A Sbjct: 320 QVNPRQTEILYQLTKEVCGLTGRETIIDAYCGAGTISLFLARDCARVIGIEEVPMAVEDA 379 Query: 249 QYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSE 308 Q N N I NV+ + E+ ++ ++ + I +DPPR G + Sbjct: 380 QKNAEQNGITNVEFLTGKVEDLLPSLLE------------RACVPDVIVLDPPRRGCHAR 427 Query: 309 TEKMVQ--AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTA 365 + + RI+Y+SC+P +L ++ L + +V+++ D FP T H+E VL++ Sbjct: 428 VIEAIAQTGPDRIVYVSCDPASLARDAARLTAHGWQVKQVTPVDMFPQTGHVETVVLMSR 487 >UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevotella RepID=C9Q1J0_9BACT Length = 502 Score = 264 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 80/404 (19%), Positives = 153/404 (37%), Gaps = 60/404 (14%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS-----HYRMRAEFRIWHDG-- 56 ++LP YE QL K ++ ++ S + F + HYR + EF + Sbjct: 117 QNLP---YEEQLRAKQQQVYDQLSRISHVQLPTFYPIMGSQLTLHYRNKLEFGCSNKRWL 173 Query: 57 -----------DDLYHIIFD--QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRH 103 D + I F + ++ +L NQ+ + + Sbjct: 174 TREEVASGATFDTMNAIGFHITGAFDKILPIEKCWLMDDLQNQIRNEIRDYALTKGISFF 233 Query: 104 KLFQ-------IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRA 156 L Q + + + + +V + +H + + +Q AEAL + + + Sbjct: 234 DLRQQTGLLRDVMIRNSDTGEWMVLVQFHFETATD-QQTAEALLAHVGEHFPQITSLLWV 292 Query: 157 TKTK-----------IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD 205 K + +I E + +++ ++ SF Q N + + A Sbjct: 293 DNQKCNDTFGDLPVHVFKGNGHIFEVM----EDLRFKVGPKSFYQTNTQQAYHLYDVARR 348 Query: 206 VTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIR 264 S + + +LY G G + +AR +V+ E ++ A+ N N I N Sbjct: 349 FASLSGTETVYDLYTGTGTIANFVARQAKKVVGVEYVPEAIEDAKVNSELNGISNTTFYA 408 Query: 265 MAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEK-MVQAYP-RILYI 322 ++ + Q + I DPPR+G+ ++ + +++A P RI+Y+ Sbjct: 409 GDMKDILN-----------DEFIANNGQPDVIITDPPRAGMHADVIETIIRANPQRIVYV 457 Query: 323 SCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 SCNP T ++L L + + V + D FP+T H+E VLL + Sbjct: 458 SCNPATQARDLIALDERYAVTAVQPVDMFPHTPHVENVVLLERR 501 >UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y1544_PARUW Length = 442 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 90/403 (22%), Positives = 162/403 (40%), Gaps = 59/403 (14%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE---VFRSPVSHYRMRAEFRIWHDGDDLY 60 + LP YE QL +K +Q++ P+ + + + S HYR + E D Sbjct: 55 QQLP---YELQLKQKEKSIQNLFKPYLNENVKWHSIIPSSPWHYRNKMELTFSSDKAGRR 111 Query: 61 HII--FDQQTKSRIRVDSFPAASELINQLMTAMIAG-----------VRNNPVLRHKLFQ 107 ++ ++ A+ Q A+ +++ LR + Sbjct: 112 YLGLIMQGTRGHVFQMKECLLANGWFAQAARAIQKWWDNSDVQAYHAIKDRGSLRTLTLR 171 Query: 108 IDYLTTLSNQAVVSLLYHKKLD-----DEWRQEAEALRDALRAQN--------LNVHLIG 154 T +V L D + + + LRD++ N L + I Sbjct: 172 EGLRT---GDRLVMLTVSGNPDYALTKSQLQSFVQVLRDSIELSNSDQKLSVFLRIQQIA 228 Query: 155 RATKTK----IELDQDYIDERLPVAG-----KEMIYRQVENSFTQPNAAMNIQMLEWALD 205 + T + D+I E+L + + + +R ++F QPN ++ AL Sbjct: 229 KGRPTNFYEMLLYGPDHIREKLYLPDFNEAIQTLNFRISPSAFFQPNTEQAEKLYSQALK 288 Query: 206 VTKGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIR 264 + S ++ +LYCG G + A+ V+ E+++ SV A+ N+ N + NV I Sbjct: 289 LADLSASHVVYDLYCGTGTLGICSAKYVKEVIGIELSRESVLDARENVKENGLSNVTIKS 348 Query: 265 MAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYI 322 + +A++ + + + VDPPR GLD++ K + P+++YI Sbjct: 349 GDVGQVLEALSQENSL-----------KPDVVMVDPPRIGLDAKAIKHILDLKAPKLVYI 397 Query: 323 SCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLT 364 SCNP+T NL L ++++ + DQFP T H+E LLT Sbjct: 398 SCNPKTQVMNLGPLIDGGYQLQIVQPVDQFPQTVHVENITLLT 440 >UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQ01_9SPHI Length = 476 Score = 263 bits (673), Expect = 7e-69, Method: Composition-based stats. Identities = 80/397 (20%), Positives = 152/397 (38%), Gaps = 52/397 (13%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRS-----PVSHYRMRAEFRI--------- 52 QY QL K ++ + + FR P +YR + EF Sbjct: 95 QHIQYSEQLGFKHQQVVDHLTRIGKVELPEFRPIMPAHPTQYYRNKLEFTCAEGRWLTSA 154 Query: 53 ---WHDGDDLYHIIFD--QQTKSRIRVDSFPAASELINQLMTAMIAG-VRNNPVLRHKLF 106 + D + F + + + + N + A+ A ++++ L + Sbjct: 155 EVGTNQPMDQRAVGFHVPGRFDKVLPIRHCYLQPDPSNAIREAIDAYVLQHDMTLYNLKM 214 Query: 107 QIDYLTTL-------SNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRAT-- 157 +L TL + Q +V+L + + L+ +++ Sbjct: 215 HTGFLRTLIIRTADTTQQVMVTLQVAQDNPELLNGLMTYLQTLFPQITSLNYILNTKKND 274 Query: 158 -----KTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG 212 + + YI+E++ + + +R SF Q NA + + A + + Sbjct: 275 SYQDQEVVNWAGKPYIEEQM----EALTFRIGPKSFYQTNAQQAYNLYKVAREFAGLTGQ 330 Query: 213 D-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT 271 + + +LY G G +L +AR V+ E + SVA A+ N N I N + Sbjct: 331 ERVYDLYTGTGTIALFVARLAKHVVGVEYVEASVADARVNAQVNGIANTTFVAGDM---- 386 Query: 272 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET-EKMVQAYP-RILYISCNPETL 329 + + + + + DPPR+G+D ++++A P RI+Y+SCN T Sbjct: 387 -------KAILTDEFFAEHGRPDVVITDPPRAGMDEAVTRQLLKAAPERIVYVSCNTATQ 439 Query: 330 CKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++L L + + V + D FP+THH+E V+LT + Sbjct: 440 ARDLAILDEGYTVTGVQPVDMFPHTHHVENVVVLTKR 476 >UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XV5_DESDG Length = 457 Score = 263 bits (672), Expect = 9e-69, Method: Composition-based stats. Identities = 67/390 (17%), Positives = 138/390 (35%), Gaps = 52/390 (13%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDD 58 +H+P Y QL K + ++P + +R + EF +D Sbjct: 89 QHMP---YAMQLEWKQRLVHDAFVRIGRIAEPPVLPALASPAQRFFRNKMEFAFENDSPQ 145 Query: 59 LYHIIFD-QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYL------ 111 + + + I + S+ +++ ++ + + + Sbjct: 146 GIRLGLRARGSHDVINISECHLQSQRCVRIVDSVRRWAAQTGLTAWDVRSGEGFFRYLVI 205 Query: 112 --TTLSNQAVVSLLYH-------------KKLDDEWRQEAEALRDALRAQNLNVHLIGRA 156 T + Q +V L+ ++L D + E + + + + A Sbjct: 206 RETLYTGQCMVQLITGPEKTGGNAGARAVRQLGDLLAESGEGITSFIHGERRSPVQAAYA 265 Query: 157 TKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLE 216 KT ++ E+L + ++F Q N A + A D G G L + Sbjct: 266 EKTLYSTGDSHLTEQL----NGRTFTMAPHAFFQTNTAATEILSRTAADYA-GQGGVLWD 320 Query: 217 LYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG 276 LYCG G L +A V E+++ +V A N + + + Sbjct: 321 LYCGVGTMGLGMADQVTSVTGMEVSEEAVQFATLNARNQQVPQARFLAGDVRRLL----- 375 Query: 277 VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLE 334 + + + DPPR+G+ + + +A +I+YISC+P T ++ Sbjct: 376 ----------IRHKEKPDIVITDPPRAGMHPDVLSALISRAPRKIVYISCDPATQARDAA 425 Query: 335 TLSQTHKVERLALFDQFPYTHHMECGVLLT 364 L+ ++++E + D FP++ H+E L + Sbjct: 426 ALTDSYRLEAVQPVDMFPHSAHIESVALFS 455 >UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 Tax=Shewanella RepID=RUMA_SHEPA Length = 445 Score = 263 bits (672), Expect = 9e-69, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 159/372 (42%), Gaps = 35/372 (9%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGDDL 59 +HL E AQ K L ++ F+ +P+ HYR RA W D + Sbjct: 95 QHLDIE---AQRKHKANTLVDLVNKFAQTQASEVCAPLSGDAWHYRRRARLATWFDKNTK 151 Query: 60 YH-IIFDQQTKS-RIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + + F + S + + S +E ++ L+ + A + N + L ++ LT N Sbjct: 152 HISLGFRASSSSDVVEIQSCAVLAEPLSALIPDL-AFMLNQLSGKKALGHVE-LTQADNG 209 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDER--LPVA 175 V L K L D+ + L + + V L + + E+ ++ Sbjct: 210 NFVVLRVTKVLSDK---DKARLVEFANKHEVIVLLQDDDAQCEHLNGAG---EQPFYALS 263 Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDR 234 G ++ +F Q N +N M+ A++ G+ +L+L+CG GNFSL LA++ Sbjct: 264 GSDIKLNFSPGNFIQVNGPVNQAMVSQAVEWLSPKAGERVLDLFCGIGNFSLPLAKDGAE 323 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 V+ E V A+ N + +D V + + ++ ++ + Sbjct: 324 VIGVEGVVAMVEQARVNAKQSGLDKVAFYH---ADLSADLSKEPWLGKV----------D 370 Query: 295 TIFVDPPRSGLDSETEKMVQAYPR-ILYISCNPETLCKNLE-TLSQTHKVERLALFDQFP 352 + +DP R+G + + + P+ ++Y+SCNP +L ++ E L Q ++++++ L D FP Sbjct: 371 KMLIDPARAGAYESMQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQLKKIGLIDMFP 430 Query: 353 YTHHMECGVLLT 364 THH+E L Sbjct: 431 QTHHLESMALFE 442 >UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GDX8_9FIRM Length = 394 Score = 263 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 151/385 (39%), Gaps = 48/385 (12%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHII-FDQQT 68 Y+ QL K + ++ + P + + +YR +A + +++ + Sbjct: 26 PYKEQLKRKEKEVADLLKAYGRPEPILGMNFPYYYRNKAHAVLGGSLKGKIVCGTYERGS 85 Query: 69 KSRIRVDSFPAASELINQLMTAMIAGVRNNPV-----------LRHKLFQIDYLTTLSNQ 117 + +D +QL+ ++ + + V LRH + + T Q Sbjct: 86 HRIVNIDRCQIEDRECDQLIASVRELLPSFKVEPYNEDTGRGCLRHIIAR---RTADGGQ 142 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDA-------LRAQNLNVHLIGRATKTKIELDQDYIDE 170 ++ L+ + ++ ALR A L+ N + + ++ YI++ Sbjct: 143 IMLILVTAQAAFPSRKKFVSALRKAHPNITTILQNINGQSTSVVLGDRYEVLYGPGYIED 202 Query: 171 RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLA-- 227 RL +R +F Q N+ ++ A+D+ K +L+ YCG G +A Sbjct: 203 RLM----GARFRISPGAFYQVNSQQTKKLYRLAVDMADLKGKERVLDTYCGTGTIGIAAA 258 Query: 228 --LARNFDR---VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 LAR ++ E +V A+ N N + + + A F A Sbjct: 259 VDLARRTKEPMELIGVECNPAAVRDARINARVNGLRQARFVVADAGAFMLAEAEA----- 313 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQTH 340 C+ +F+DPPR+G E ++ +I+YISC+P+T ++L+ L + Sbjct: 314 -------GRSCDLVFMDPPRAGSTEEFLLALRRLVPEKIVYISCDPKTQARDLKYLDSAY 366 Query: 341 KVERLALFDQFPYTHHMECGVLLTA 365 + R+A D FP+T +E VLL Sbjct: 367 AIRRIAPVDMFPFTDGIENVVLLEK 391 >UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embryophyta RepID=Q9LU28_ARATH Length = 554 Score = 263 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 85/414 (20%), Positives = 145/414 (35%), Gaps = 76/414 (18%) Query: 11 YEAQLAEKVVRLQSMM---APFSD--------LVPEVFRSPVSHYRMRAEFRI------- 52 YEAQL K ++ ++ FSD L P V HYR + EF Sbjct: 155 YEAQLRAKEEQVHELIRHVGRFSDNNPGLEIVLKPIVACDIQFHYRNKMEFSFGPQRWLP 214 Query: 53 ------WHDGDDLYHIIFDQQT--KSRIRVDSFPAASELINQLMTAMIAGVR-------- 96 DG + + + VD SE N ++ A+ R Sbjct: 215 IEMLNERQDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNLVLAAVQDCWRDPELSLSP 274 Query: 97 -----NNPVLRHKLFQIDY-LTTLSNQAVVSLLYHKKLDDEWRQEAEALRDA------LR 144 + L+H + + + T S + +V+ + + + + + + Sbjct: 275 YDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYKPELLKPLVDRISSIPQVVSIMN 334 Query: 145 AQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWAL 204 N +V K +D I E L + + ++ NSF Q N + + Sbjct: 335 NVNSSVGNTSVGEKEYTLYGKDTITEVL----RGLTFQISANSFFQTNTHQAEVLYKLIE 390 Query: 205 D---VTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQ 261 + + +L+L+CG G L LAR V E+ ++ A N N I+N Sbjct: 391 ESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGIENAT 450 Query: 262 IIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD--SETEKMVQAYPRI 319 I+ + + + + + DP R G+ + PRI Sbjct: 451 FIQGDLNKIGEDFGN------------NFPKPDIVISDPNRPGMHMKLIKFLLKLKSPRI 498 Query: 320 LYISCNPETLCKNLETLSQT---------HKVERLALFDQFPYTHHMECGVLLT 364 +Y+SCNP T ++L+ L +K+ + D FP+T H+EC LL Sbjct: 499 IYVSCNPATCARDLDYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLLE 552 >UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S2X4_FINM2 Length = 442 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 158/382 (41%), Gaps = 48/382 (12%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV-SHYRMRAEFRIWHDGDDLYHIIFDQQT 68 +Y+ + K L + D SP+ YR + E+ ++ Sbjct: 84 EYDVECDLKKKTLTELYKDIYDEDIIFHPSPILQGYRNKMEYTFGDSVKGGPLVLGLHTK 143 Query: 69 KSRIRVDS---FPAASELINQLMTAMIAG-----------VRNNPVLRHKLFQIDYLTTL 114 + E N++ A+ +++ +LRH + + + Sbjct: 144 NKFYEITDTVDCNIIDEGFNKIRQAVQEYFRDKNYEFFKKIKHTGLLRHFIIRKSF---S 200 Query: 115 SNQAVVSLLYH--KKLDDEWRQEAEALRDAL----RAQNLNVHLIGRATKTKIELDQDYI 168 ++ +++L+ K +++ + A+ + + + N N+ K ++ ++Y+ Sbjct: 201 DDEYMINLVTTSDKFDVNDFVEFAKQIDNRIVSIYHTINDNISDAVIVDKLELLHGKEYL 260 Query: 169 DERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT-KGSKGDLLELYCGNGNFSLA 227 E++ + +R SF QPN A Q+ AL++ S ++ +LYCG G + Sbjct: 261 TEKI----NGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGKNVYDLYCGTGTIAQI 316 Query: 228 LARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 287 A+ + V+ EI + +V A+ N N + N + I F + Sbjct: 317 FAKKSESVIGVEIVEEAVEKAKENAELNGLTNTEFICDDCLNFME--------------- 361 Query: 288 LKSYQCETIFVDPPRSGLDSETE-KMVQAYP-RILYISCNPETLCKNLETL-SQTHKVER 344 K + + + +DPPR G+ + +++ P + +YISCNP T +L+ + ++++ Sbjct: 362 -KVEKKDVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGYEIKS 420 Query: 345 LALFDQFPYTHHMECGVLLTAK 366 L FDQFP T+H E VLL+ K Sbjct: 421 LEFFDQFPRTYHCEAVVLLSRK 442 >UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Proteobacteria RepID=RUMA_RALPJ Length = 450 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 144/385 (37%), Gaps = 45/385 (11%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV----FRSPVSHYRMRAEFRIWHD--GD 57 +HL + AQ+A K L+ + + L P+V P YR RA + H Sbjct: 87 QHLDS---RAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAKG 143 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + ++++ + S ++ L+ + V ++ ++ QI+ Sbjct: 144 GVLVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQIELAVGQD-- 200 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELD--QDYIDERLPVA 175 V+ L + L+ ++ LR N+ L + T + LP Sbjct: 201 --VTALVLRNLEPITAEDEAELRAFADHHNIQFWLQPKGPDTVYPFYPLDRTLTYTLPEF 258 Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDR 234 G M ++ FTQ N +N ++ AL + GD LL+L+CG GNF+L +A Sbjct: 259 GITMPFK--PTDFTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRARE 316 Query: 235 VLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 V+ E ++ A N N + E + + Sbjct: 317 VMGIEGSEALTTRALANAQHNGLHTKTSFACRNLFEVSADDVAA------------LGKF 364 Query: 294 ETIFVDPPRSGLDSETEKMVQ-----------AYPRILYISCNPETLCKNLETL--SQTH 340 + +DPPR G + ++ + + RI+Y+SCNP TL ++ L + Sbjct: 365 DRWLIDPPREGALAVSKALAELSQSGGDAADLLPKRIIYVSCNPATLARDAGLLVHEAGY 424 Query: 341 KVERLALFDQFPYTHHMECGVLLTA 365 ++ + + FP+T H+E + Sbjct: 425 RLAGAGVVNMFPHTSHVESMAVFER 449 >UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18 Tax=Proteobacteria RepID=RUMA_ACIAC Length = 491 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 146/386 (37%), Gaps = 44/386 (11%) Query: 13 AQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH--DGDDLYHIIFDQ 66 AQ+A K L+ + + E P+ YR RA + H + ++ Sbjct: 116 AQVAVKQRVLEDNLWHLGKVKAETVLRPIEGPAWGYRYRARLAVRHVEKKGKVLVGFHER 175 Query: 67 QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHK 126 +++ ++ P ++ ++ + A + + R QI+ V+ L + Sbjct: 176 KSRYIADMEVCPVLPPHVSAMLLPLRALIASMDA-RDTCPQIELACGDD----VTALVLR 230 Query: 127 KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ--DYIDERLPVAGKEMIYRQV 184 L+ + LR A + L + T LD+ ++ LP G M ++ Sbjct: 231 HLEPLSEADLGRLRSFAAAHGVQWWLQPKGPDTVHLLDEGGPQLNYALPDFGITMPFK-- 288 Query: 185 ENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKP 243 FTQ N +N ++ AL + + D +++ +CG GNF+L +A V+ E ++ Sbjct: 289 PTDFTQVNPHINRVLVTRALRLLDAGRTDRVIDWFCGLGNFTLPIATQAREVVGIEGSEA 348 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 VA ++ N N D Q +A F F + + + VDPPR Sbjct: 349 LVARSRENYRKNQDDRPQGQALAPATFV----ARNLFEMTPEMLIADGVADKWLVDPPRE 404 Query: 304 GLDSETEKMVQAY----------------------PRILYISCNPETLCKNLETL--SQT 339 G + + + + RI+Y+SCNP TL ++ L Sbjct: 405 GAFALAKALADIHQARIGAEDAPALPASAEGWTPPQRIVYVSCNPATLARDAGLLVHQAG 464 Query: 340 HKVERLALFDQFPYTHHMECGVLLTA 365 ++ + + FP+T H+E + Sbjct: 465 YRCVAAGVVNMFPHTAHVESMAVFER 490 >UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Methylococcus capsulatus RepID=RUMA_METCA Length = 443 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 83/369 (22%), Positives = 147/369 (39%), Gaps = 36/369 (9%) Query: 12 EAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHD-GDDLYHIIFDQ 66 +AQ+A K L + P P+ YR RA + + F + Sbjct: 96 DAQIALKEDLLLDQFRRIGKVEPAAQFPPLRGPHWGYRSRARLGARYVAKKGRELVGFRE 155 Query: 67 QTK-SRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 + + P + + + A + LR +L QI+ A+V Sbjct: 156 HASAKIVDMTDCPVLHPALGERIQAFAELIEG-LSLRERLPQIEAAVGEERTALV----F 210 Query: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDE-RLPVAGKEMIYRQV 184 + L+D ++ L + Q L+V++ + + + + + E+ +R Sbjct: 211 RVLEDPTAEDFARLARFGKDQGLDVYIQREGRDSVAPVYPETAHDLSYSLPEWEVTFRFG 270 Query: 185 ENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKP 243 FTQ N A+N QM++ + + +L+L+CG GNF+L LAR V E Sbjct: 271 PLDFTQVNMAINRQMIDQVMQALDPQPEERVLDLFCGLGNFTLPLARRAGHVTGVEGGAE 330 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 +VA A N A N I NV+ + ++ + R + + +DP RS Sbjct: 331 AVARAIRNAADNGIGNVEF---HVADLSKPESCGSWAGR---------EYHKVLLDPSRS 378 Query: 304 GLDSETEKMVQAYP-----RILYISCNPETLCKNLETLSQ--THKVERLALFDQFPYTHH 356 G +++Q P RI+Y+SCNP TL ++ L +++ + + D FP+T H Sbjct: 379 GA----LEILQCVPNWKAGRIVYVSCNPSTLARDAGILVHEYGYRLLKAGVMDMFPHTAH 434 Query: 357 MECGVLLTA 365 +E + Sbjct: 435 VESIAVFER 443 >UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Cyanobacteria RepID=Q2JP08_SYNJB Length = 464 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 79/390 (20%), Positives = 142/390 (36%), Gaps = 52/390 (13%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDL-----VPEVFRSPVSHYRMRAEFRIWH-DGDD 58 Y QLA K L+ + L VP + YR + + + +G Sbjct: 97 QWQHVSYAQQLATKQQILRDALERIGGLTLPQPVPILGSQQPLRYRNKVTYPMAKPEGQP 156 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQ 107 L + + + + ++ P E ++ + + + R+ LRH + Sbjct: 157 LRMGYYQRGSHRLVNLNQCPVQDERLDVFLREIKRDLQETGWSVYDESRHQGHLRHLGLR 216 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDA---LRAQNLNVHLIGR----ATKTK 160 I T + +++L+ + AE L LN++ +T+ Sbjct: 217 IGRRTR---EVLLTLVSCSRRLPHLESWAERWMQRYPDLVGVCLNLNSARTNAIFGPETE 273 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYC 219 + + + E SF Q N W D + +L+ YC Sbjct: 274 VIAGRGSLREEFA----GFSLWIDSTSFFQVNTEQAEAFFTWIADQLNLRGEETILDAYC 329 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G +L LA+ R + E +VA A+YN N I + Q + E+ + Sbjct: 330 GIGTLTLLLAQRAKRAMGVEALPEAVAQARYNAQFNGIASAQFFQGTVEQVLPTL----- 384 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKM--VQAYPRILYISCNPETLCKNLETL- 336 + + +DPPR G D + + ++ PRI+YISC+P TL ++L+ L Sbjct: 385 -----------PPADIVVLDPPRRGCDRQVLETLKLRRPPRIVYISCHPATLARDLQILL 433 Query: 337 -SQTHKVERLALFDQFPYTHHMECGVLLTA 365 ++++ + D FP T H+E L Sbjct: 434 AEGSYRLTQWRAADFFPQTGHVEGVAFLER 463 >UniRef50_C8WNQ3 RNA methyltransferase, TrmA family n=2 Tax=Coriobacteriaceae RepID=C8WNQ3_EGGLE Length = 438 Score = 261 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 76/411 (18%), Positives = 145/411 (35%), Gaps = 74/411 (18%) Query: 10 QYEAQLAEKVVRLQSMMAPFSD---LVPEVFRSPVSHYRMR----------------AEF 50 Y QLA K R+ + A +D L P + YR + A Sbjct: 37 PYAQQLASKDTRVAELFADVADASALRPILGMDEPYCYRNKVVSPYAPGRKLQGSANARA 96 Query: 51 RIWHDGDD-------------LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN 97 D + ++ + + D +E +++ + + Sbjct: 97 GKGRDARGGRDGKRAQKPRREILCGMYAAGSHRIVPTDGCLIENEEAKRIIRTVRDLMPR 156 Query: 98 NPV-----------LRHKLFQIDYLTTLSNQAVVSLLYHKKLDD-------EWRQEAEAL 139 + LRH + ++ + S + +V+L+ + + E + + Sbjct: 157 FGIEPYREDSGTGFLRHAVVRVGH---TSGEILVTLVTNGRAFPASRAFCRELVRRCPRI 213 Query: 140 RDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQM 199 ++ N + + + +I ++L + +R SF Q NA + Sbjct: 214 TSVVQNVNERQTNVILGEREQTLYGPGFILDKL----CGLSFRISSQSFYQVNAVQTEVL 269 Query: 200 LEWALDVTKGSKGD-LLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI 257 E A+D+ + + ++ YCG G L A+ +V+ + +V A+ N N + Sbjct: 270 YERAIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVRDARENAKHNGV 329 Query: 258 DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QA 315 +N + A F + + + + +DPPR+G E A Sbjct: 330 ENARFAVGDAGAFMRERAAAGDA------------VDVLLMDPPRAGSSEEFLAAAVTLA 377 Query: 316 YPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 RI+YISCNP T ++L L Q + V + D FP+T H+E L+ Sbjct: 378 PRRIVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFPHTDHIETIALVER 428 >UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Alteromonadales RepID=RUMA_PSEHT Length = 441 Score = 261 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 90/376 (23%), Positives = 163/376 (43%), Gaps = 40/376 (10%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGD-D 58 +HL + Q Q+ EK + + + F+ L +++P+ +HYR A + D Sbjct: 93 QHLDSSQ---QVVEKQIAVSKLFEKFAKLDELNWQAPLLSKATHYRRSARLAVMFDKKAK 149 Query: 59 LYHIIFDQ-QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 H+ + +KS I ++ P SE+ + T + + L H + + L Q Sbjct: 150 KMHVGYRASGSKSIISINECPVLSEVFANVFTVFDNLINQHKAL-HSVSHLQ-LCQGDEQ 207 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD----YIDERLP 173 V + + K + ++ + A L+ ++ IE Y E L Sbjct: 208 NFVIIRHTKPISEDIKALVAQ-----SAAEQQWQLVWQSESEVIEHSHLAMPFYALEEL- 261 Query: 174 VAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNF 232 + + N+F Q NA++N ML+ A + + +L+L+CG GNFSL LA+ Sbjct: 262 ----GLKFEFGLNNFIQVNASVNQAMLKQAQNWLALKGDENVLDLFCGIGNFSLVLAKQA 317 Query: 233 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 V+ E +VA A N N I N Q + T + FN+ Sbjct: 318 KTVIGVEGVASAVAMATQNAHTNSITNAQFNCF---DLTNKIETASWFNK---------N 365 Query: 293 CETIFVDPPRSGLDSETEKM-VQAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQ 350 + + +DP R+G + E++ ++ + ILY+SC+P TL ++ +SQ ++ ++ L + Sbjct: 366 LDVLVLDPSRTGAITVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELHKIGLMNM 425 Query: 351 FPYTHHMECGVLLTAK 366 FP+T H+E L + Sbjct: 426 FPHTGHIETMALFQRR 441 >UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0F7_DESAC Length = 424 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 88/362 (24%), Positives = 142/362 (39%), Gaps = 27/362 (7%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFR-----SPVSHYRMRAEFRIWHDGDDLYHIIFD 65 YE Q K + V R YR R +F+ ++ + Sbjct: 82 YEQQCRWKQQIFVDSCVRHGRIDQGVIRDLVPAPQEFGYRSRVQFKCYNSPQGFILGFYR 141 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 + + + I V P + I MTA + + V + QID S+ A+ +++++ Sbjct: 142 RGSHNVIDVRHCPVIALPIAAQMTAWRT-LFDGSVYASGVSQIDVAVG-SDDALRTIVHY 199 Query: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 + E L L A + L+ K L Q +D + V M Sbjct: 200 R--GAETEAFCAWLAGCLDAVD-GAVLVQTGRKNPQILLQGQVDLAIRVDEPPMELHYGP 256 Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPS 244 F Q + N Q++ ++ + + D +L+LYCG GNFSL LAR V+ E PS Sbjct: 257 GGFAQVHLEQNRQLVARVIEAAEVTAQDAVLDLYCGMGNFSLPLARRAGAVVGVEDYAPS 316 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 ++ A N + N + E F + I +DPPRSG Sbjct: 317 ISYADRNRDTLGLTNATFHACSVETFLGRWRR---------------TADVIVLDPPRSG 361 Query: 305 LDSETEKMVQAYPR-ILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 M++ PR I+Y+SC+ +TL ++L L+Q++ V + D FP T H E +L Sbjct: 362 AREAVAGMMRCRPRRIVYVSCDQQTLMRDLTALAQSYTVTSIQALDMFPQTCHTEVLAVL 421 Query: 364 TA 365 Sbjct: 422 DR 423 >UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHU9_9CLOT Length = 467 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 151/386 (39%), Gaps = 45/386 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFR----SPVSHYRMRAEFRIWHDGDDLYH 61 L +YEA+L K ++++ + V R YR +A+F + Sbjct: 95 LRHIRYEAELDIKRRQVEACFRRIGGIDLTVERILSNPHTEGYRNKAQFPVALRDGKAVA 154 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDY 110 + +++ + S L+ ++ + + ++R+ + Sbjct: 155 GFYAKRSHRVVPCGDCRLQSPAFAPLVRVILDFIDEYHLPPYDETNHTGLIRNLYLR--- 211 Query: 111 LTTLSNQAVVSLLYHKKLDDEWRQEAEAL-------RDALRAQNLNVHLIGRATKTKIEL 163 + + +V L+ KK + A L + L +N + + + Sbjct: 212 EAPATGEIMVCLVATKKHIPSADELARRLVACNPKVKSVLVNRNSQKTNVILGDRCSVVW 271 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNG 222 + I + L + + SF Q N+ ++ + A + + + L++LYCG G Sbjct: 272 GKPVIHDVL----RGVDVELSPLSFYQVNSLQAERLYDLAEEYAHLTGEETLVDLYCGAG 327 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 L++A RV+ EI +V A+ + N + N + + A+E +++ Sbjct: 328 TIGLSMAGKAKRVIGVEIIPVAVEDARRSAQRNGVRNAEFLCADAKEAARSL-------- 379 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQT 339 + + + + VDPPR G D+ + + A RI+ ISCNP T ++ L Q Sbjct: 380 ----AQQGLRPDVVIVDPPRKGCDASVLQSICEMAPQRIVMISCNPATAARDCGLLQQQG 435 Query: 340 HKVERLALFDQFPYTHHMECGVLLTA 365 ++VE +A D F T H+EC + L Sbjct: 436 YRVEEVAAADLFSRTLHVECVISLVK 461 >UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=20 Tax=Cyanobacteria RepID=Y1967_SYNY3 Length = 463 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 84/391 (21%), Positives = 152/391 (38%), Gaps = 54/391 (13%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDD 58 +HL Y+ Q+ K ++ + L P + YR +A + + Sbjct: 95 QHLD---YQFQVESKQQQIIDALERIGGFTTLPLEPLLQSPASLGYRNKATYPLSRSKTG 151 Query: 59 LYHIIFDQQTKSR-IRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLF 106 + ++ R + ++ P + +N L+T + + N LRH Sbjct: 152 QVQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDEEKKQGKLRHLSL 211 Query: 107 QIDYLTTLSNQAVVSLLY-HKKLDDEWRQEAEALRDALRAQNLNVHLIGR------ATKT 159 +I T + +++L+ HK L D Q E L + +++ +T Sbjct: 212 RIGQRT---GEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLNIQPEPNNRIFGDET 268 Query: 160 KIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELY 218 + + E+ ++ + N+F Q N+ +L +LL + Y Sbjct: 269 VVIAGRGICREKFA----DLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAELLVDAY 324 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 G G F+L LAR + +A E+ + SV Q N N I NV + E ++ + Sbjct: 325 AGVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTLSEI- 383 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEK-MVQAYP-RILYISCNPETLCKNLETL 336 + + +DPPR G E + +++ P +I YISC P TL ++L+ L Sbjct: 384 --------------PDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFL 429 Query: 337 SQT--HKVERLALFDQFPYTHHMECGVLLTA 365 + + + D FP T H+EC V+L A Sbjct: 430 CAEGFYGITWVQGCDFFPQTAHVECAVILKA 460 >UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacillales RepID=B1YK40_EXIS2 Length = 461 Score = 260 bits (664), Expect = 7e-68, Method: Composition-based stats. Identities = 72/387 (18%), Positives = 151/387 (39%), Gaps = 46/387 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE------VFRSPVSHYRMRAEFRIWHDGDD 58 L YE QL K +++ + L E + YR +++F + +G Sbjct: 87 QLQHMSYEGQLRYKEDMVRNAFTKSTKLNVEKSDIRPTIGTTEWEYRNKSQFAVGKEGTQ 146 Query: 59 LYHIIFDQQTKSRIRVDSFPA-----------ASELINQLMTAMIAGVRNNPVLRHKLFQ 107 + ++ + + +D ++++N + + + V+R+ + + Sbjct: 147 IVSGLYSANSNRLVAIDECIVQNKETLRVNKAVTKILNDYNVPVYNSAKQDGVIRNIVVR 206 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR------ATKTKI 161 T + V L+ K + + + D ++ +++ + +T+I Sbjct: 207 TGIKT---GEIQVVLVAFKDGFKDLEGLSRDIYDIPGVISVALNINDKMTSRVFGEQTEI 263 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQML-EWALDVTKGSKGDLLELYCG 220 + I+E++ E Y+ +F Q N +M E + +++ Y G Sbjct: 264 LRGVERIEEKM----GEFTYQLSPRAFFQLNPEQAERMYGEIVKAAALTGEERVVDAYAG 319 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G+ L +A V EI + +V A ++ ++ Q + AE + Sbjct: 320 VGSIGLWIANGAKEVRGMEIVEEAVEDATAHMKQYGFNHAQYVVGKAETWIPRWVK---- 375 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-S 337 + + + VDPPRSG D++ + +I+Y+SCNP+TL ++ + L Sbjct: 376 --------EGWIPDVFIVDPPRSGCDTQLLNAMISSKAKKIIYVSCNPQTLARDCDHLMK 427 Query: 338 QTHKVERLALFDQFPYTHHMECGVLLT 364 +KV + +D FP T H+E V+L Sbjct: 428 AGYKVSYIQPYDMFPQTAHVEAIVVLE 454 >UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Bacteria RepID=C7N354_SLAHD Length = 401 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 77/394 (19%), Positives = 145/394 (36%), Gaps = 57/394 (14%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDL----VPEVFRSPVSHYRMRAEFRI------WHDGDDL 59 Y QLA K + + A D +P + HYR + + Sbjct: 24 PYGQQLARKQQHVDELFADLIDDGTQCLPILGMKVPLHYRNKVVSPFVGIYDKRTRRRRI 83 Query: 60 YHIIFDQQTKSRIRVDSFPAASEL-------INQLMTAMI----AGVRNNPVLRHKLFQI 108 ++++ T I + I LM R+ LRH ++ Sbjct: 84 LCGMYERGTHWVIDSSECLIENAQAKAIILTIRDLMPKFRIEPYDEDRDEGFLRHAQVRV 143 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDA-------LRAQNLNVHLIGRATKTKI 161 + S + +V+L+ + ++ AL ++ N + K + Sbjct: 144 GHN---SGEVMVTLVTRTEQFPTAKKFVRALVSRHPEITTVVQNVNSRKTNVIMGDKERK 200 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCG 220 +I + L + +R SF Q N+ + A+ + K + + +++ YCG Sbjct: 201 LYGPGFILDTL----CGLSFRISSTSFYQVNSTQTEVLYSTAIRMAKLTGTETVMDAYCG 256 Query: 221 NGNFSLALARN------FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAM 274 G L R +++ E +VA A+ N N IDN + + A + + Sbjct: 257 TGTIGLVAVRGINGEPGAAKLIGVEERADAVADARNNARHNGIDNAEFVAADAGAYMRE- 315 Query: 275 NGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKN 332 + + +F+DPPR+G + K + RI+YISCNP T ++ Sbjct: 316 -----------QAEQGRSVDVLFMDPPRAGSTPDFLKAACSISPKRIVYISCNPTTQARD 364 Query: 333 LETL-SQTHKVERLALFDQFPYTHHMECGVLLTA 365 + L ++++ L D FP+T H+EC + ++ Sbjct: 365 AKYLIEHGYRIDVLQPVDMFPHTDHVECVISMSR 398 >UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH77_MOOTA Length = 473 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 90/412 (21%), Positives = 140/412 (33%), Gaps = 75/412 (18%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L Y AQL K + + ++P + + YR + + Sbjct: 79 LQHLDYRAQLHWKRRLVIDALQRLGHLRDIPVLPVLGMANPWGYRNKVRLHVRRG----R 134 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 + + P L+ A A VR P L L + L+ ++ Sbjct: 135 LGFYRPGSHELAPFSCCPLLPPG---LLKAARAIVRLLPELPPGLQHVTLRQGLATGELL 191 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK-------------------- 160 +L R+ AE L V L G Sbjct: 192 VVLEALPGWQGDRELAEKLAGRFPELVGVVSLAGGGRSRSGPKDFAGEPALECSGWVKTG 251 Query: 161 -----------------------IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNI 197 +DY++ERL ++ + +F Q N+A Sbjct: 252 GKEARRARYQEGFVPRRLGGRPFTLYGRDYLEERL----GDLRFYISATTFFQVNSAQAE 307 Query: 198 QMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANH 256 + A G ++L+ YCG+G +L L+R RV E+ ++ A+ N N+ Sbjct: 308 VLYNKAATFAGLQGGEEVLDAYCGSGAIALWLSRQAGRVEGVEVVPEAIVDARRNSILNN 367 Query: 257 IDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY 316 + NV AAE + G K Y+ E I +DPPR+G D V Sbjct: 368 LANVHFRTGAAEAVLPRLAG------------KGYRPEVIILDPPRAGCDRRVLAAVATM 415 Query: 317 P--RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 R++YISCNP TL ++L L + K + D FP+THH+EC L Sbjct: 416 EPRRVVYISCNPSTLARDLAHLREAGFKPGPVQPVDMFPHTHHVECCCFLVK 467 >UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37219 Length = 416 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 80/398 (20%), Positives = 141/398 (35%), Gaps = 57/398 (14%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP-----VSHYRMRAEFRI--WHDGDD 58 YEA+ K + A LVP+ + YR +A++ + D+ Sbjct: 35 FMHMSYEAECRIKSNIVTEAFARIGHLVPKEILPIFSSDSIEGYRNKAQYPYADYKYTDN 94 Query: 59 LYH---IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV--------------RNNPVL 101 + ++ + V ++ + N VL Sbjct: 95 TVFPKFGFYAPRSHRLVPVTYCVLQPAAFGDILRHCEEELGTADFNAITPYNEESGNGVL 154 Query: 102 RHKLFQIDYLTTLSNQAVVSLLYHKK----------LDDEWRQEAEALRDALRAQNLNVH 151 RH + + S + +V + K L + + ++ + N Sbjct: 155 RHLYIRQGFH---SKEIMVCFVTAKDNNHIRKQLTDLGNTLIADTHEIKSVMLNVNPQKT 211 Query: 152 LIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK 211 + KT + +D I + L + SF Q N A ++ A + K Sbjct: 212 NVILGKKTVCLIGKDTIADTL----CGVPVSLSPQSFYQVNTAQAEKLFAEAKRLAAPKK 267 Query: 212 GDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF 270 +LL +LYCG G L++A +V+ E+ ++ A+ N I N + A E Sbjct: 268 DELLLDLYCGAGAIGLSMADTVGKVIGVEVVPQAIEDAKANAKRAGISNAEFFAGDAGEI 327 Query: 271 TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKM-VQAYP-RILYISCNPET 328 + + + I +DPPR G D+ T ++ P RI+ ISCNP T Sbjct: 328 A------------AKFAAEGRKPDIIVLDPPRKGCDTLTLDACLEMAPSRIVMISCNPST 375 Query: 329 LCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 ++ L + ++ L D FP T H+EC VL++ Sbjct: 376 AARDAAYLCENGFTLDVLRPADFFPRTKHVECVVLMSR 413 >UniRef50_UPI00003979FC COG2265: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase n=1 Tax=Actinobacillus pleuropneumoniae serovar 1 str. 4074 RepID=UPI00003979FC Length = 229 Score = 259 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 130/228 (57%), Positives = 168/228 (73%), Gaps = 5/228 (2%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHD-----GDDL 59 +LP EQY LAEK L +++APF+ EVF S H+RMRAEFR+WHD ++L Sbjct: 2 NLPIEQYADLLAEKAKNLTALLAPFNPPELEVFESETGHFRMRAEFRVWHDTNEVGENEL 61 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 YHI+FDQ+TK R V+ FP A+ LIN++M++++A ++ N +L KLFQ+DYL+TLS + Sbjct: 62 YHIMFDQETKQRYCVEQFPIANHLINKMMSSLLAEIKGNELLTRKLFQVDYLSTLSGEIA 121 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 VS+LYHKKL++EW+ EA AL+ L Q V +IGRATK KI LD+DY++E LPV G+ + Sbjct: 122 VSMLYHKKLNEEWQAEAAALKARLEHQGFKVQIIGRATKQKIALDRDYVEEVLPVDGRNL 181 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLA 227 IYRQVENSFTQPNA MNI+MLEWA T+ S GDLLELYCGNG F L Sbjct: 182 IYRQVENSFTQPNAKMNIKMLEWARSCTRHSSGDLLELYCGNGIFRLH 229 >UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30E02 Length = 456 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 87/388 (22%), Positives = 143/388 (36%), Gaps = 45/388 (11%) Query: 3 PEHLPTEQYEAQLAEKVVRLQSMMAPFSDL-----VPEVFRSPVSHYRMRAEFRIWHDG- 56 P + YE QL K ++ + L P V YR + E+ +G Sbjct: 88 PWQILP--YERQLEIKSKQVDDALRRIGKLGGFELEPIVPALETWRYRNKLEYSFGTEGT 145 Query: 57 ---DDLYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVL 101 +L + + ASE N + ++A R L Sbjct: 146 AERGELIFGFHAPGEWDRIVPIADCMLASERGNAVRDQVLAFCREQGLTAYDRRTRRGFL 205 Query: 102 RHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI 161 R+ + + T +V++ +LD E EA L Q + T++ Sbjct: 206 RNCVIREGRRTGQFQVRLVTM--PGELDREAFAEAVDCDGLLWTQFDGLGETTAEGDTEL 263 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELYCG 220 DY++E L M +R N+F Q N M ++ A D + L +LYCG Sbjct: 264 IAGSDYLEEEL----NGMSFRVSPNAFFQVNTEMAEKLYALAGDYASLAGFERLYDLYCG 319 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G L +A + EI + ++ A N N IDN + + + Sbjct: 320 IGTVGLTMAPRAGELWGLEIIEDAIGDAIANARLNEIDNARFFAGDVRTALRLLVDT--- 376 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ 338 + + + VDPPR+GL + + + + R++YISCNP TL N L++ Sbjct: 377 ---------AGSPDVVVVDPPRAGLSRKVVRRIIDASPKRLVYISCNPTTLAPNGAQLAE 427 Query: 339 -THKVERLALFDQFPYTHHMECGVLLTA 365 + + ++ D FP T H+EC L Sbjct: 428 AGYVLRKVRPVDMFPQTPHIECVALFER 455 >UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bacteria RepID=A9KP69_CLOPH Length = 463 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 85/400 (21%), Positives = 158/400 (39%), Gaps = 63/400 (15%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFR------SPVS-HYRMRAEFRIWHDGDDL 59 T YE Q+ K +++ ++ + + SP+ YR + EF + D Sbjct: 84 QTIPYETQIKIKADQVKKLIDEVIATDNKEYEFQGIEGSPLEFGYRNKMEFSFGDEFKDG 143 Query: 60 YHIIFDQQTKSRIRV---DSFPAASELINQLMTAMIAG-----------VRNNPVLRHKL 105 + + S + E N+++ +++ + + LRH L Sbjct: 144 PLALGLHKKGSFYDIVTTSDCKLVHEDYNRILGCVLSLAKEYNLNYYHKMSHEGYLRHLL 203 Query: 106 FQIDYLTTLSNQAVVSLLYHKK---LDDEWRQEAEALRDALRAQNLNVHLIG-------- 154 + + + +VSL+ + L + + LR++L+ +L ++G Sbjct: 204 IR---RAARTGEILVSLITTSQTNVLVNGEEEFLNKLRESLKNLSLEGSIVGILHTVNDS 260 Query: 155 -----RATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKG 209 ++ +T I QD+I E + + ++ SF Q N+ + D Sbjct: 261 LADVVQSDRTDILDGQDFIFEEV----LGLKFKISTFSFFQTNSLGAEVLYNCVRDFVGE 316 Query: 210 SKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE 268 +K L+ +LY G G + LA +V+ EI +V AA+ N + N + N + I Sbjct: 317 TKDKLIFDLYSGTGTIAQLLAPVAKKVIGVEIVGEAVVAARENASLNKLTNCEFIAGDV- 375 Query: 269 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNP 326 L+ ID + + I +DPPR G+ + + R++YISC P Sbjct: 376 --------------LKVIDTIEEKPDLIVLDPPRDGIHPKALDKIIDYGVDRLVYISCKP 421 Query: 327 ETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 +L ++L L + + VE++ D FP T H E LL Sbjct: 422 SSLARDLVVLQERGYWVEKVRCVDMFPCTVHTETVCLLNR 461 >UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEY8_SYNFM Length = 488 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 81/403 (20%), Positives = 147/403 (36%), Gaps = 54/403 (13%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRI----WHD 55 YE QL K V++ + + + V + HYR + EF W Sbjct: 98 QWQDIAYEEQLKWKRVQVADSLEHLAGAQGVKIEAAVPSDRLIHYRNKMEFTFSDRRWLT 157 Query: 56 GDDLYHIIFDQQ------------TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRH 103 +++ V+ S +++ R + V + Sbjct: 158 PEEIDAAGMRDAYTFTLGLHVRSWFDKVFNVEDCLLESAEAVEIVKETRDWCRGSGVPAY 217 Query: 104 KLFQ----IDYLTTLSNQAVVSLLYHKKLDDEWRQEA------EALRDALRAQNLNVHLI 153 + +L + L H D+ EA L VH + Sbjct: 218 GIKSQRGFWRFLVIREGKRTGQTLLHLVTSDQPEHEAAVNTLTRHLVSRFPHITTVVHSV 277 Query: 154 GRATKT-------KIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDV 206 R ++ I+ERL + +R SF Q N ++ + + Sbjct: 278 SRKKAQVAFGDQSRVVAGPGVIEERL----GGLRFRISAESFFQTNPFSAEKLYDEVSRL 333 Query: 207 TK-GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRM 265 + +LYCG G+ +L++A RV+ E+ ++ A N N I+N + I Sbjct: 334 AAFQGTETVWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDACVNARLNGIENARFISG 393 Query: 266 AAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETE-KMVQAYP-RILYIS 323 +E N +G + + + DPPR+G+ + +++ P RI+Y+S Sbjct: 394 DLKE---------RINHARGPGSGEHHPDIVITDPPRAGMHPQVVGALLEMGPGRIIYVS 444 Query: 324 CNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 CNP TL ++L ++ +++ + FD FP+T H+EC V + K Sbjct: 445 CNPATLARDLAFFTERYEIGTVRPFDLFPHTPHIECVVRMDRK 487 >UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Colwellia psychrerythraea 34H RepID=RUMA_COLP3 Length = 469 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 94/386 (24%), Positives = 168/386 (43%), Gaps = 49/386 (12%) Query: 12 EAQLAEKVVRLQSMMAP---FSDLVPEV----------FRSPVSHYRMRAEFRIWHDGDD 58 E QL K ++ + + ++ PE+ +S HYR +A + D + Sbjct: 99 EEQLLFKQQKITDLFSRSFSTQNITPEINTAHLPWQAAIKSSPWHYRRKARIGVQFDKNA 158 Query: 59 LYHIIFDQQTKSRIR-VDSFPAASELIN---QLMTAMIAGVRNNPVLRH-KLFQIDYLTT 113 I F Q++ +++ + S P E ++ L+ ++A + + H ++ Q D T Sbjct: 159 QATIGFRQKSTNQLAAIKSCPVLVEPLSAIFPLLKKLLAQLTVKSAIGHIEVIQADISDT 218 Query: 114 LS-------NQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL--- 163 S NQ VV + K ++D + + L AQ H+I ++ L Sbjct: 219 SSADKIQKDNQVVVVVRQLKPMND---TDIGLWQ--LYAQRHCWHVIIDDGNKQLPLADI 273 Query: 164 -DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGN 221 D + + +Y N F Q N +N M+ AL + ++L+L+CG Sbjct: 274 KGGDSFELSYELTDTSKVY-FSSNDFIQINHQVNNAMISQALAWLNILATDNVLDLFCGL 332 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 GNFSLALA++ RV+ E + V A N N +DN Q + + Sbjct: 333 GNFSLALAKHAKRVVGVEGMQTMVDKATQNSLVNGLDNCQFYQADL-----------NSH 381 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL-SQT 339 L ++ + + +DP R+G + ++ + P +LY+SC+P TL ++ L S+ Sbjct: 382 WLLEPWVQGQVFDKVLLDPARAGAEQAVSQIAELKIPCVLYVSCDPATLARDSAILVSKG 441 Query: 340 HKVERLALFDQFPYTHHMECGVLLTA 365 +K+E+++L D F T H+E +L T Sbjct: 442 YKLEKISLMDMFSQTKHVETMILFTH 467 >UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MPE3_9FIRM Length = 442 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 151/374 (40%), Gaps = 27/374 (7%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPF----SDLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L Y+ QL+ K +Q + + P + YR + + I Sbjct: 81 QLQHMAYQEQLSLKQEIVQIHFLRHQLDLNRIHPILPSPKQERYRNKVQVPIQEKDGLAQ 140 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-LRHKLFQIDYLTTLSNQAV 119 + + + + +E NQ+ + + + + + I ++ + V Sbjct: 141 LGFYRNHSHDVVVYEDCMVETEESNQITHFVKRFLNQHHLTSNFRYLFIRHIHQRNEVMV 200 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKE- 178 + ++ + + E +++ + + + +T + LD + P+ +E Sbjct: 201 MPIVREYPFEKSKKLALELVKEFPNITSFSY--LKNPKETNVILDGPIFEVIGPLFLEES 258 Query: 179 ---MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDR 234 M ++ SF Q N + AL++ SK D +++LYCG G + A+ + Sbjct: 259 LLGMNFQLSAKSFFQVNPYATEVLYVKALELADISKEDTVVDLYCGTGTIGILAAKIAKK 318 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 V+ EI ++ A+ N N DN++ M A++ + + +E + Sbjct: 319 VIGIEIVPEAIDNAKANAQLNCQDNLEFWCMDAQDGAKKIVETKE------------SID 366 Query: 295 TIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQ-THKVERLALFDQF 351 + VDPPR G ET + +Q +++YISC+P TL ++LE L KVE + D F Sbjct: 367 VVIVDPPRKGCSLETLQAIQKMEPKKMVYISCDPSTLARDLEFLQSMGFKVETVQPVDLF 426 Query: 352 PYTHHMECGVLLTA 365 P T H+EC L+ Sbjct: 427 PQTVHVECIALIQR 440 >UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A4B1_PELCD Length = 434 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 143/369 (38%), Gaps = 29/369 (7%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 HLP Y Q K + + D+ P V YR R + + + Sbjct: 86 HLP---YAEQCHWKETIFRDFLVRKLDVDSELVRPIVPSPQQWGYRSRVQLKCLNTPKGF 142 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + + + I VD P L+NQ + + + N R F + +Q Sbjct: 143 LVGFYRRGSHYVIPVDHCPILHPLLNQAKDLLRSWIENT---RWSQFVSQIDLAVDDQER 199 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 V + H L ++ L+ + N+ + + K ++ ++ + V E+ Sbjct: 200 VRAVVHC-LANDVDDFVTHLKPGALSANMGLFVQ-TGRKHNLQHVCGPVELLIEVDTPEL 257 Query: 180 IYRQVENSFTQPNAAMNIQMLEWAL-DVTKGSKGDLLELYCGNGNFSLALARNFDRVLAT 238 F Q N N M+ + + G +L+L+CG GNFSL +AR V+ Sbjct: 258 RLGYGPGGFAQINLPQNRAMVREVVGTLVSNPPGRVLDLFCGMGNFSLPVARLAQEVVGV 317 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E S+ A+ N N I+NV A E+ IDL + + Sbjct: 318 EAYLQSIEMARLNARLNEIENVSFFAREA------YGAATEYGADGAIDL-------VIM 364 Query: 299 DPPRSGLDSETEKMVQAYP-RILYISCNPETLCKNLE-TLSQTHKVERLALFDQFPYTHH 356 DPPRSG ++V P RILY+SC+P TL ++L L +++ FD FP+THH Sbjct: 365 DPPRSGAYDVARELVTVRPARILYVSCDPPTLVRDLLPLLHNGYRLVWSRPFDLFPHTHH 424 Query: 357 MECGVLLTA 365 E L Sbjct: 425 TESITFLER 433 >UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desulfitobacterium hafniense RepID=B8FPA8_DESHD Length = 446 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 69/372 (18%), Positives = 146/372 (39%), Gaps = 40/372 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-------PEVFRSPVSHYRMRAEFRIWHDGD 57 L Y L K ++ + + P + YR +A H G+ Sbjct: 96 QLQHLNYAQTLLWKKRWVEDALTRIGKIPLEKVKVHPTLGMDEPWRYRNKARL---HRGE 152 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-RNNPVLRHKLFQIDYLTTLSN 116 + +++K+ + SE +N+ + A + + + L L + + Sbjct: 153 GNTLGYYQEKSKATVPFTDCLLISESMNRWVREAEAILGQQDKNLFPDLNALTFRENSQG 212 Query: 117 QAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAG 176 + ++ L K + ++A+ + + + +I +++ ++ L Sbjct: 213 EGMLILDSLKDV-----RQADVWSEMGGGTHSVWGINSSGEPERIAGQKEFTEDVL---- 263 Query: 177 KEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDRV 235 ++ +F Q N ++ LD + S + +LYCG G +LALA +V Sbjct: 264 -GARFKISPLAFLQVNPVQTRKLYNKVLDWAELSTEKVVWDLYCGIGTITLALAAKAKKV 322 Query: 236 LATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCET 295 E +V A+ N N ++NV+ + AE+ Q + Sbjct: 323 WGIEENPYAVEDARENAKRNRVNNVEFMVGKAEDTFQQIGDY---------------PHI 367 Query: 296 IFVDPPRSGLDSETEK-MVQAYP-RILYISCNPETLCKNLETLS-QTHKVERLALFDQFP 352 + +DPPR+G + + +++ P +I+Y+SC+ TL ++L L ++V + D FP Sbjct: 368 VVLDPPRAGAHRKVLEGLLELKPEQIIYVSCDAGTLARDLGILQNGGYRVVEVQPVDMFP 427 Query: 353 YTHHMECGVLLT 364 +T +E +++T Sbjct: 428 WTVSVESIIVMT 439 >UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUT8_SYNWW Length = 419 Score = 257 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 84/367 (22%), Positives = 149/367 (40%), Gaps = 35/367 (9%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSD----LVPEVFRSPVSHYRMRAEFRIWHDGDDLYH- 61 +YE +L K ++ + + + P + HYR + + + G Sbjct: 77 QHAKYEEELVLKRQVVKDAIQRIAKIATVVEPVLSMPEPWHYRNKVTWHMAATGKQEPVL 136 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVS 121 F + ++ + + LI++ M + A V+ L + S+ + Sbjct: 137 GFFREASRQLLPISHC----RLISEKMNCLTARVKALLPLIQPATGSEITLRESSLDHST 192 Query: 122 LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIY 181 +L K L W A + L A + +V +I + T I Q RL ++ + Sbjct: 193 MLIWKGL-QGWP--APEIWAELSAISDSVVVIEKNTCHYISGPQ-----RLLDKLGQVKF 244 Query: 182 RQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIA 241 +F Q N +M+ L + S +L+ +CG G+ +L LAR +RV+ E Sbjct: 245 ALSPGAFFQVNHCQAEEMIRLILSLVDFSGKTVLDAFCGVGSIALNLARQAERVIGVESY 304 Query: 242 KPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPP 301 +P++ A+ N I NV+ I E ++ + I +DPP Sbjct: 305 EPAIHDARSNAIEAGIYNVEFIHGFCERVVARIDE---------------PIDVIVLDPP 349 Query: 302 RSGLDSETEKMV-QAYPR-ILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHME 358 RSG E + + PR I+Y+SCNP TL ++L Q ++ + D FP T+H+E Sbjct: 350 RSGCKKELIQACSRISPREIVYVSCNPATLARDLALFGQLGYRPLLIQPIDMFPRTYHVE 409 Query: 359 CGVLLTA 365 VL++ Sbjct: 410 TVVLMSR 416 >UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E7Z6_MACCJ Length = 459 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 82/387 (21%), Positives = 149/387 (38%), Gaps = 43/387 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-LVPEVFRS-----PVSHYRMRAEFRIWHDGDD 58 L Y QL K ++ + ++ + + + YR + +F + G Sbjct: 86 QLQHLSYRGQLKYKKQIVEDALTKYAPHVKLDKIKDVKGMHNPYTYRNKNQFPVEKTGRK 145 Query: 59 LYHIIFDQQTKSRIRVDSFPAASEL-------INQLMTAM-----IAGVRNNPVLRHKLF 106 + ++ + + + I + + ++M+ + +R V RH + Sbjct: 146 VRAGLYKEHSNTLIDLHECIVQDNRTMHTTNEVKKIMSELNIDACKNPMREKGV-RHIVT 204 Query: 107 QIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD 166 ++ T V+ H K D + L +++ LN++ KT I + + Sbjct: 205 RVALATGEIQVVFVTNTRHLKKQDLLAERVMRLAG-VKSVALNINT----EKTSIVMGDE 259 Query: 167 YI----DERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGN 221 I +E + ++ IY SF Q N + + D + + +++ +CG Sbjct: 260 TIVIAGEETIREQLQDHIYDLSAESFFQLNPRQTVVLYNEVRDAAALTGQENVVDAFCGT 319 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G + LA N V + + + A YN N DN + A E Sbjct: 320 GTIGIWLADNAGEVRGMDTNEDGIVNAIYNATLNGADNCKFEVGDASE------------ 367 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQT 339 +L + + + I VDPPR+GL T K++ +Y SCNP TL K+L L++ Sbjct: 368 KLNEWIEEGFYPDVITVDPPRTGLSEATIKLINEIKPKTFVYTSCNPSTLAKDLAHLTKA 427 Query: 340 HKVERLALFDQFPYTHHMECGVLLTAK 366 +VE + D FP T +E V LT K Sbjct: 428 FQVEYIQPVDMFPQTAQVEAVVKLTRK 454 >UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marinomonas RepID=A6VUQ2_MARMS Length = 440 Score = 256 bits (655), Expect = 8e-67, Method: Composition-based stats. Identities = 93/368 (25%), Positives = 152/368 (41%), Gaps = 31/368 (8%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDL-VPEVFRSPVSHYRMRAEFRIWHDGDDLYHI 62 +HL EQ QL+ K LQ + E + YR RA I + Sbjct: 98 QHLANEQ---QLSAKADWLQGQLRNLITTQELETLSDTPTGYRRRARLAIDIKKGRMVLG 154 Query: 63 IFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSL 122 + +K I +D + + + + N L L ++ L + Sbjct: 155 FRGKASKEIISIDQCVVLTPNLQSTFLLLKLKLLEND-LAGVLGHVELLEDTKGVS-ALF 212 Query: 123 LYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERL-PVAGKEMIY 181 + DE + E A+ V L +A K + E++ ++ Sbjct: 213 RLTSPISDELKNAWEDW-----AEKGRVALYWQAPK---VGKAEVALEKMRYYDLGDLRL 264 Query: 182 RQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDRVLATEI 240 + F Q NAAMN +M+ A+D SK D+ L+L+CG GNFSL LA + V+ E+ Sbjct: 265 KYHPQDFIQVNAAMNQKMVVQAMDWLNPSKQDVILDLFCGVGNFSLPLAVHAQAVIGVEV 324 Query: 241 AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP 300 + V AA+ N N DN+ + + +L + +DP Sbjct: 325 QETMVEAARENARVNGFDNLSFVAAD-------------LTKPVNNELFKQTITKVLLDP 371 Query: 301 PRSGLDSETEKMVQAYP-RILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHME 358 PR+G + +++ P +ILY+SCN TL ++ E L ++ ++V R++L D FP T H+E Sbjct: 372 PRAGAFEFLDSIIKIGPTQILYVSCNASTLARDAEYLVAKGYRVLRVSLMDMFPQTSHVE 431 Query: 359 CGVLLTAK 366 +LL K Sbjct: 432 TMMLLQKK 439 >UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU49_9GAMM Length = 439 Score = 256 bits (654), Expect = 9e-67, Method: Composition-based stats. Identities = 94/374 (25%), Positives = 161/374 (43%), Gaps = 36/374 (9%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRS----PVSHYRMRAEFRIWHDGDDL 59 +HL AQ+A K +L + DL PE+ P YR RA + D Sbjct: 90 QHLDHG---AQIAFKQQQLLDSLQRV-DLSPEIILPALSAPQWGYRRRARLAVQRAKDGQ 145 Query: 60 YHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + F RI + +E + +++ A+ + N P +L +I+ L+ N Sbjct: 146 IIVGFRNAGSRRIEPITECHVLAEPLPEIVAALPGWMVNFPSG-IRLSEIELLSA-DNAV 203 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKE 178 +++ + R+ A AQ L + K D D+ L V + Sbjct: 204 AIAIEASRVPSASEREAMLAELTFTDAQ-----LWWKTEKQTAFKRIDGGDQALHVVLND 258 Query: 179 MI-YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFD 233 I + F Q N+ +N QM++ LD+ + + ++L+CG+GNFSL LA FD Sbjct: 259 RIELQVEPGQFVQVNSEINRQMIDQVLDLVRTPNSERASVAVDLFCGSGNFSLPLAAQFD 318 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 RV+ E V AQ N N++ N + + V + + G+ + Sbjct: 319 RVIGIEGLSELVGKAQENAQRNNVSNAEFV-------------VSDLSNWTGMRKIKGKV 365 Query: 294 ETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQF 351 + + +DPPRSG +V+ +++YISC+P T+ ++L+ L + +K+ + D F Sbjct: 366 DLVLLDPPRSGAAGVMPWVVKTKAKQVVYISCHPSTMVRDLKVLVEAGYKMIAAGVMDMF 425 Query: 352 PYTHHMECGVLLTA 365 P+T H+E LL Sbjct: 426 PHTAHVEAIALLEK 439 >UniRef50_UPI0001AEC40A RNA methyltransferase, TrmA family protein n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC40A Length = 486 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 75/370 (20%), Positives = 153/370 (41%), Gaps = 22/370 (5%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSH----YRMRAEFRIWHDGDDLY 60 L + +A L ++ L+ MM + P V+++P++ YR +A I + Sbjct: 129 QLQHIKPDAALEQRDRALKVMMERQLSMKPHVWQAPLAGPRPQYRRKARLAIDARNPNQI 188 Query: 61 HIIFDQ-QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + F + + + I ++ P + +++L+ + + RH + I + N + Sbjct: 189 KLGFREANSSNVINAETCPILVDPLSKLIGPLRDALTGFESARH-IGHISLIAG-DNTSH 246 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 + + + K L+ E L + + + + K + + Sbjct: 247 LVIKHTKALEAELIDAVSELVNTSSSVGVCGIELKLENKQAQIRSVGRGTDMVMNTVNSC 306 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLAT 238 N F Q N +N +M+ A+ + + + + G GNF+L +A+ +V A Sbjct: 307 SISPSANDFIQINKVVNEKMVNQAIGWLNPEPNERVADWFSGLGNFTLPIAKLGAKVQAV 366 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E V A+ N I+NV+ + + + T ++ + + + Sbjct: 367 EGVAEMVRRAKDNAQQQGIENVEWLHLDLADKTNVEASLQ------------LGFDKVLL 414 Query: 299 DPPRSGLDSETEKMVQAYPR-ILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHH 356 DP R G + +V+A P+ I+Y+SCNP T ++ + L +++E+ + + FP+THH Sbjct: 415 DPSREGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLIDGGYEMEKAGVAEMFPFTHH 474 Query: 357 MECGVLLTAK 366 ME L T K Sbjct: 475 MEMMALFTRK 484 >UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8X8_9DELT Length = 465 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 80/397 (20%), Positives = 156/397 (39%), Gaps = 51/397 (12%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP-----VSHYRMRAEFRIWHDGDD 58 +HL Y QLA+K ++ + + + V +P + YR + EF D Sbjct: 85 QHLA---YPEQLAQKNAQVAAALTRIGGVQDLVMDAPAGSPDIWGYRNKMEFAFEQREDG 141 Query: 59 LYHIIFDQ------QTKSRIRVDSFPAASELINQLMTAMIAG-----------VRNNPVL 101 L+ + + + + +D + ++M A+ + Sbjct: 142 LHLGLREPTPEGSNRPGPVLDIDQCHLCAAWDVEIMVAVRQFCAATGVPAYNPATESGFW 201 Query: 102 RHKLFQIDYLTTLSNQAVVSLLYH---------KKLDDEWRQEAEALRDALRAQNLNVHL 152 RH + + + + +V L+ K + + + Q L + + + Sbjct: 202 RHLVIR----HAAAGEVMVHLITARDERKDNLIKDMAELFLQRFPELASFVHSTRVKRTT 257 Query: 153 IGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG 212 + K L +++ERL +E+ YR N+F Q N ++ + S Sbjct: 258 VAFGEKIVYSLGNAFVEERLARGEREVRYRLSPNAFFQTNTGGASELFGTVAEFCALSDT 317 Query: 213 DLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT 271 +L +LYCG G + LA RV+ E ++ +V A+ + N + N + + E+ Sbjct: 318 HVLLDLYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARESARLNGLTNCSFVSGSLEQGI 377 Query: 272 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETL 329 G + + + RSG+ +T + + A PRI+ +SC+P TL Sbjct: 378 PGFAGSGDQAVPDVVVVDPP----------RSGMHEKTAEALLALGAPRIVAVSCDPATL 427 Query: 330 CKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++++ L+ + V R+ D FP+THH+E LL + Sbjct: 428 ARDVKRLADRYHVTRVRAVDMFPHTHHIETVALLELR 464 >UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Gammaproteobacteria RepID=RUMA_FRAT1 Length = 449 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 77/377 (20%), Positives = 162/377 (42%), Gaps = 35/377 (9%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD-LVPEVFRSPV-----SHYRMRAEFRIWH-DGDD 58 L +AQ+ K L + + + + PE P+ YR +A + + Sbjct: 90 LQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVSKKG 149 Query: 59 LYHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + F ++ + +D + L+ +T + + + + +H + Q++ + Sbjct: 150 KILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQH-IAQLEIAIDDTRP 208 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKT--KIELDQDYIDERL--- 172 A++ + L+ ++ E LR + N ++L + T ++ D ++L Sbjct: 209 AMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKLSYQ 264 Query: 173 PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARN 231 P AG ++ + N FTQ N +N +M++ A+++ S+ D +++L+CG GNF+L ++++ Sbjct: 265 PAAGIDIGFE--PNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQH 322 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY 291 V+ E V A+ N+I NV A ++ FN + Sbjct: 323 AKTVIGVEGEPTMVKRAKETADNNNITNVNFY---AANLFESFEDKEWFNNFE------- 372 Query: 292 QCETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL--SQTHKVERLALF 348 + +DPPR+G + + RI+Y+SC+ L ++ L ++ +K+ + Sbjct: 373 -YNKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVM 431 Query: 349 DQFPYTHHMECGVLLTA 365 D FP+T H+E + Sbjct: 432 DMFPHTMHVESIAVFEK 448 >UniRef50_C5CUM3 RNA methyltransferase, TrmA family n=1 Tax=Variovorax paradoxus S110 RepID=C5CUM3_VARPS Length = 482 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 148/390 (37%), Gaps = 42/390 (10%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGDDL 59 +HL AQ+A K L+ + + P+ P+ HYR RA + H Sbjct: 102 QHLDE---AAQVAVKQRALEDNLWHLGKVRPDNVLRPLEGPAWHYRYRARLSVRHVVKKG 158 Query: 60 YHIIFDQQTKSRIRVDS--FPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYL------ 111 +I + KSR D P + ++ ++ + A + + R QI+ Sbjct: 159 TVLIGFHERKSRYLADMQVCPVLPKQVSDMLMPLRALIGSLDA-RETCPQIELACGDAPG 217 Query: 112 TTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK--IELDQDYID 169 TT + L + + L + +A A + + L + T +E + Sbjct: 218 TTSLGTIALVLRHLEPLSNADIGRLKAF--AAQNAGVQWWLQAKGPDTVKLLEEGGMPLS 275 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLAL 228 LP G M ++ FTQ N +N ++ AL + + +++ +CG GNF+L L Sbjct: 276 YELPQFGVTMPFK--PTDFTQVNPHINRALVGKALRLLDVQADERVIDWFCGLGNFTLPL 333 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 A VL E + VA A N + N ++A F F + + Sbjct: 334 ASRAREVLGIEGSDTLVARASDNFSKNQPATSARRALSATRFV----ARNLFEMTPAMLV 389 Query: 289 KSYQCETIFVDPPRSGLDSETEKMVQAY-------------PRILYISCNPETLCKNLET 335 + VDPPR G + + M + RI+Y+SCNP TL ++ Sbjct: 390 ADGSADKWLVDPPREGAFALAKAMADLHLQPELRTDGWTPPKRIVYVSCNPSTLARDAGL 449 Query: 336 L--SQTHKVERLALFDQFPYTHHMECGVLL 363 L ++ + + FP+T H+E + Sbjct: 450 LVHQAGYRCTFAGVINMFPHTAHVESIAVF 479 >UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TM76_9BACT Length = 454 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 83/390 (21%), Positives = 141/390 (36%), Gaps = 48/390 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVF----RSPVSHYRMRAEFRIWHDGDDLY 60 L Y+ QL K ++ M + + YR +A F + + Sbjct: 80 QLQHGSYDLQLEIKAKSVRDAMERIGRMRVDRLVCHPSPMQWGYRNKASFPVRSENGGEI 139 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQL--------MTAM-------IAGVRNNPVLRHKL 105 F + +D P + +L M + R+ +LRH + Sbjct: 140 -GFFRSGSHKLAPIDGCPVLMPHVEKLYVDFRDTVMPELKRNGVPFYDERRHKGLLRHMV 198 Query: 106 FQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI---- 161 F+ + +L AVV+ L + + + L++ + V + +I Sbjct: 199 FRGNREGSLLALAVVTSLRDCRGKELLERSLARLKETTQTSFSGVWNENSSRGNRILGER 258 Query: 162 ---ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELY 218 I E++ +F Q N ++ A + G ++ELY Sbjct: 259 SSTIWGDGVITEKIS----NYDLSYDGTAFFQVNPFQAERLFLRASSIVAERGGAVVELY 314 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 G G ++ LA+ VLA E P++ N++ N +DNV+ I AE+ + M + Sbjct: 315 AGVGALTVILAKAAKTVLAVEEWAPAIERLLENVSRNGLDNVKGICNRAEDTVRTMVEAK 374 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL 336 + I VDPPR G SE V + ++Y+SCNP TL ++ L Sbjct: 375 --------------PDVIVVDPPRGGCASEVLDAVTESSADMLVYVSCNPSTLARDGAKL 420 Query: 337 -SQTHKVERLALFDQFPYTHHMECGVLLTA 365 S ++ L FD FP T H+E Sbjct: 421 VSDGWELATLECFDLFPQTVHVETLASFKR 450 >UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Acinetobacter junii SH205 RepID=D0SQB6_ACIJU Length = 469 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 80/374 (21%), Positives = 155/374 (41%), Gaps = 31/374 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH--DGDDL 59 L + Q+ K L+S + F+ L PE + +P+ + YR RA + + + L Sbjct: 101 LQHIHPDQQIVLKQNVLKSHLEHFAGLQPEEWLAPIRSVKTDYRRRARIGVRYIPKQNRL 160 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + + + ++++ + + + + H I ++ Sbjct: 161 VMGFREHHSNHLTDIQQCKVLDQVLSDSLVELKTLLESLTGKAH----IGHIELAMGDDE 216 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 VSLL + LD+ + LR + ++ + + +D ++ RL + ++ Sbjct: 217 VSLLI-RHLDELNVSDVNQLRQFTLLKGWQLYFQSKGIDSLHRVDDEHAPMRLHYSLEDF 275 Query: 180 I--YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFD--- 233 + FTQ N+ +N +M++ A ++ +G+ +L+L+CG GNFSL LAR Sbjct: 276 KVKFAFSPLDFTQVNSHVNARMVQLACELLDLKEGERVLDLFCGLGNFSLPLARCVGETG 335 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 RV+ E + V A N AN++ + Sbjct: 336 RVIGVEASDEMVERATENAQANYLTQASFFSQDLTK------------DFSHHSWAKQGF 383 Query: 294 ETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQF 351 + + +DPPRSG + + RI+Y+SCNP TL ++ L+Q +++++ A+ D F Sbjct: 384 DALLIDPPRSGAYEVMQYVPNFGAKRIVYVSCNPSTLARDAGVLAQYGYQLKKAAVMDMF 443 Query: 352 PYTHHMECGVLLTA 365 +T H+E L Sbjct: 444 THTEHVESIALFEK 457 >UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Enterobacteriaceae RepID=RUMA_ENTS8 Length = 432 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 87/357 (24%), Positives = 144/357 (40%), Gaps = 30/357 (8%) Query: 14 QLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFR--IWHDGDDLYHIIFDQQTKSR 71 Q K L MM D EV P YR RA L + Sbjct: 100 QQRSKAQALCRMMKREVD---EVISGPAWGYRRRARLSLNFTPRKPGLQMGFRKAGSNDL 156 Query: 72 IRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDE 131 + V P + L+ + + + +RH L ++ + S +V L + K L Sbjct: 157 VDVHRCPVLVPRLEALLPKLRDCLSSLDGVRH-LGHVELVDVTSGPLMV-LRHLKPLSAA 214 Query: 132 WRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQP 191 + E L ++ + ++L ++ + + E G + + F Q Sbjct: 215 ---DREKLECFSHSEGVALYLAPQSDTLEHLNGEMPWYES---DGLRLTF--SPRDFIQV 266 Query: 192 NAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQY 250 N A+N QM+ AL+ + G+ +L+L+CG GNF+L LAR + V+ E V Y Sbjct: 267 NDAVNQQMVARALEWLEIQPGERVLDLFCGMGNFTLPLARRAESVVGVEGVAALVEKGDY 326 Query: 251 NIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETE 310 N N + NV + EE + + + +DP R+G + Sbjct: 327 NAGLNALKNVTFFQHNLEEDVTRQPWAQ------------QGFDKVLLDPARAGAAGVMQ 374 Query: 311 KMVQAYP-RILYISCNPETLCKNLE-TLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 +V+ P R++Y+SCNP TL ++ E L+ ++ RLA+ D FP+T H+E L Sbjct: 375 HIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVRLAMLDMFPHTGHLESMALFER 431 >UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFU4_RHOM4 Length = 466 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 84/402 (20%), Positives = 150/402 (37%), Gaps = 61/402 (15%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHD---GDD 58 +YEAQL K + + P + + YR + EF D + Sbjct: 84 QHVRYEAQLEAKRQSVYEALVHHGGFEDVEVRPTLPSPRLYGYRNKMEFSFSADRWLTPE 143 Query: 59 LYHIIFDQQTK------------SRIRVDSF----PAASELINQLMTAMIAGV------- 95 I ++ P L+N+L A Sbjct: 144 EIASGRPLDRHFAVGLHVPGNFYKVIDLEECHLPEPITVRLLNELRAFFKAKGWEPWDIR 203 Query: 96 RNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR 155 R+ LRH + + T + + +V+L+ + + + L++ V+ I Sbjct: 204 RHEGYLRHLVIRTG---TRTGEVMVNLVTSRYDEARMAELGAFLQEQFPEVTTLVNTINS 260 Query: 156 ATKTKIELDQDYIDERLPVAGKEMI--------YRQVENSFTQPNAAMNIQMLEWALDVT 207 Y + + G +I + ++F Q N ++ E A ++ Sbjct: 261 RPAQV-----SYGEATYTIFGPGVIHDCIGPFRFEIAPDAFFQTNTEQAERLYEVARELA 315 Query: 208 KGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMA 266 DL+ +LYCG G S+ +A + V+ E+ +V A+ N AAN I N + Sbjct: 316 ALRPDDLVYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANAAANGITNCTFVAGD 375 Query: 267 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISC 324 E F R G + + + VDPPR+G+ + + + R +Y+SC Sbjct: 376 LLEVL-----TPAFVRTHG------RPDVVIVDPPRAGMHPKVVRRIGQLRPERFVYVSC 424 Query: 325 NPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 NP+T ++L+ L +++E + D FP+T H+E V L A+ Sbjct: 425 NPQTQARDLKLLRDLYRIEAVQPVDLFPHTDHVESVVALRAR 466 >UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14 Tax=Shewanella RepID=RUMA_SHEDO Length = 468 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 93/395 (23%), Positives = 165/395 (41%), Gaps = 58/395 (14%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSD---LVPEV----FRSPVSHYRMRAEFRIWHDG 56 +HL +AQ K L +M FS + P+V SP HYR RA + + Sbjct: 95 QHLAL---DAQQNHKQQSLNELMVKFSGSPVIDPQVQAAPLVSPPWHYRRRARLATYFNN 151 Query: 57 DD-LYHIIFDQ-QTKSRIRVDSFPAASELINQLMTA---MIAGVRNNPVLRHKLFQIDYL 111 +D + F +K + + P +E ++ L+ ++A ++ L H L Sbjct: 152 NDKSLKLGFRALSSKQIVPIKQCPVLAEPLSALINPFSLLLARLKAKASLGHL-----EL 206 Query: 112 TTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRA-------TKTKIELD 164 T N L K L + AL Q +N+ L + T E + Sbjct: 207 TQADNGTFAVLRVTKVLPAA---DIRALASFALTQGINLLLQDDSGALTDVMTMAPAEDE 263 Query: 165 QDYIDERLPVAGKEMIY-------RQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLE 216 E+ + E + +F Q NA +N +M+E A++ G+ +L+ Sbjct: 264 GATQVEQSALTLPEYALSQGQVSCQFTPGNFVQVNAEVNQRMVEQAVNWLDLQVGERVLD 323 Query: 217 LYCGNGNFSLALARNFD-----RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT 271 L+CG GNFSLALA V+ E V A+ N N++ N+ + + Sbjct: 324 LFCGVGNFSLALANRGQNLDGLEVIGVEGVPEMVQQARENAKRNNLANLSFYH---ADLS 380 Query: 272 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPR-ILYISCNPETLC 330 ++ + ++ + + +DP R+G + + + P+ ++Y+SCNP +L Sbjct: 381 ADLSNEKWLGKI----------DKLLLDPARAGAFESLQWLQKMKPKKVVYVSCNPASLA 430 Query: 331 KNLE-TLSQTHKVERLALFDQFPYTHHMECGVLLT 364 ++ LSQ +++++L++ D FP THH+E L Sbjct: 431 RDSSVLLSQGYQLKQLSMIDMFPQTHHIEAMALFE 465 >UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BHH5_9GAMM Length = 449 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 81/369 (21%), Positives = 139/369 (37%), Gaps = 29/369 (7%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSH----YRMRAEFRIWH--DGDDL 59 L ++ Q+ K + + PE P+S YR I Sbjct: 101 LQHLEHSEQIKAKESLVLDQLQRLGKFNPESTTPPLSGSDQEYRRSCRIGINQLMRDGTP 160 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + + ++VD+ P IN+++ + A + + L+ Q Sbjct: 161 IIGFRRRGSSKLLQVDNCPILINPINKILGKLKAVLSEADSCKEITHAE--LSMGDQQGA 218 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 ++L K L + + L + ++ +I D D + E Sbjct: 219 MTLRIKKPLPESLSSSLQKLAE---DNEFRLYF---DNGQQINAFGDEADLSYQLEKSET 272 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLAT 238 F Q NA++N QM+ A+D D +L+L+ G GNFSL LA V+ Sbjct: 273 QIGFKPGDFIQVNASVNTQMINRAMDWLDLKDNDRVLDLFSGVGNFSLPLATKAGSVIGV 332 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E + V AQ N ++N + R + +A+ + I + Sbjct: 333 EGVEDMVQRAQNNAKQAGLNNCEFYRADLSKDLKALPWYK------------QGFSKILI 380 Query: 299 DPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKN-LETLSQTHKVERLALFDQFPYTHH 356 DPPR+G +++ Q +ILY+SCNP L ++ E + Q +K + + D FP+T H Sbjct: 381 DPPRTGALEVIKQLEQHQCDQILYVSCNPSALARDGAELIRQGYKASKFCVMDMFPHTSH 440 Query: 357 MECGVLLTA 365 +E VL Sbjct: 441 VESLVLFEK 449 >UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8C0_9BACT Length = 541 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 88/394 (22%), Positives = 152/394 (38%), Gaps = 57/394 (14%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE-----VFRSPVSHYRMRAEFRIWHDGDDL 59 L +Y Q K + + + V YR +A F + G Sbjct: 77 QLQHAEYTLQCQIKAMLAADALRRIGGFEIDGEIPCVPSRNEWRYRNKASFPVRARGRAG 136 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQI 108 F + + + VD P + N+L + + N+ LRH + + Sbjct: 137 DVGFFKRGSHEIVPVDRCPVICDRANKLYAVVKNMINYGRFCCYDEKSNSGWLRHVVIR- 195 Query: 109 DYLTTLSNQAVVSLLYH------------KKLDDEWRQEAEALRDALRAQNLNVHLIGRA 156 + + ++ +L ++L D ++ LR + N + + Sbjct: 196 ---SARDGEELLLILVAAARPEGGALESLERLYDHLKERFPELRGLVVNVNPDEGNVIIG 252 Query: 157 TKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLE 216 ++ + +D + ERL SF Q N Q+ +A + +G +LLE Sbjct: 253 AESVLVKGEDRLTERL----GNFRLDYDGTSFFQANPGQAEQLFAYAASLAEGQ--NLLE 306 Query: 217 LYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG 276 LYCG G + L+R + A E+ +VA A+ N +N I+ + +++ AAE Sbjct: 307 LYCGVGALTAFLSRKAKTIRAVEVWASAVALARENGESNRIEGLTVLQGAAENVVA---- 362 Query: 277 VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLE 334 + + VDPPR+G D + + A PR+LYISCNP TL ++ Sbjct: 363 ----------PADLEGIDCVVVDPPRAGCDKSLIETIAASRVPRVLYISCNPATLARDAA 412 Query: 335 TLS-QTHKV--ERLALFDQFPYTHHMECGVLLTA 365 L + + + L +FD FP T H+E LL+ Sbjct: 413 LLRDAGYVLDMDSLKVFDMFPQTCHVETVCLLSK 446 >UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptococcus uberis 0140J RepID=B9DV28_STRU0 Length = 451 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 67/384 (17%), Positives = 142/384 (36%), Gaps = 38/384 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPF-------SDLVPEVFRSPVSHYRMRAEFRIWHDGD 57 + Y QL K ++ + F + + HYR + +F+ Sbjct: 84 QIMHLAYPQQLVFKEDVIRQALKKFKPKGYEQYQIRNTIGMDNPWHYRAKLQFQTRSFSG 143 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV----------LRHKLFQ 107 + ++ + + I +D+ + +++ + + + LR + + Sbjct: 144 KVVAGLYAEGSHRLIPIDNCLVQDQSTQEIVNHITQLLDQYKIPIYNERKIEGLRTIMIR 203 Query: 108 IDYLTTLSNQAVVS--LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ 165 + ++ ++ + + + ++ N + KT+I Q Sbjct: 204 KAIASQTLQIIFITSKEVHLAPIILDMTKTYPEIKTVALNINRSKSSELYGDKTEIIWGQ 263 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNF 224 D I+E + + + +F Q N + ++ + S+ D +++ YCG G Sbjct: 264 DTIEEEV----LDYHFALSPRAFYQLNPKQTSVLYAQVVEALEVSESDHIIDAYCGVGTI 319 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 A A+ + +I ++ A+ N +N AE+ Sbjct: 320 GFAFAKKVKSIRGMDIIPEAIEDAKKNAQDMGFENTYYECGKAEDIIPKWYQ-------- 371 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQTHKV 342 Y+ + I VDPPR+GLD + + + Y +++Y+SCN TL ++L LS+ + V Sbjct: 372 ----DGYRADAIIVDPPRTGLDKKLIETIMTYQPEKMVYVSCNTSTLARDLVELSKVYTV 427 Query: 343 ERLALFDQFPYTHHMECGVLLTAK 366 + + D FP+T E V L K Sbjct: 428 DYIQSVDMFPHTARTEAVVKLRRK 451 >UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRP4_DESVM Length = 479 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 76/404 (18%), Positives = 147/404 (36%), Gaps = 60/404 (14%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 Y QL K + + +++P + +R + EF D D H Sbjct: 88 QDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERGFRNKMEFAFSQDRDGQLH 147 Query: 62 IIFDQQTKS-RIRVDSFPAASELINQLMTAMIAGVRNNPVL-----------RHKLFQID 109 + ++ + + + L +++ A+ R + + R + + Sbjct: 148 LGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPGWDDSRQDGFWRFLVVREP 207 Query: 110 YLTTLSN---------------QAVVSLLYHK---------KLDDEWRQEAEALRDALRA 145 L + Q ++ + + +L + R + + + Sbjct: 208 ELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSRLAEALRARFPEVTGVVHS 267 Query: 146 QNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD 205 L+ I + + + ERL G +++ +SF Q N A + + A Sbjct: 268 LRLDPEQIAYGERVLAVDGEAVLTERL--GGNDLLL--GPDSFFQTNTAAAGLLYDEARR 323 Query: 206 VTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIR 264 + D + +LY G G +L LAR V EI +V A+ N A N+I N + Sbjct: 324 MAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARANAARNNILNCSFVS 383 Query: 265 MAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYI 322 + + + + VDPPR+GL + + V A+ RI+Y+ Sbjct: 384 GDV-----------RASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPERIVYV 432 Query: 323 SCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTA 365 SCNP T+ ++ ++ + ++ D FP++ H+EC LLT Sbjct: 433 SCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476 >UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desulfuromonadales RepID=A1ARE6_PELPD Length = 493 Score = 254 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 78/379 (20%), Positives = 145/379 (38%), Gaps = 38/379 (10%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDLYHIIF 64 Y Q K + + + L P + +++YR I + Y IF Sbjct: 121 NYCDQAEWKRQFVLRQLDAYRGLDGIELHPLLSPRRLTNYRTTVRLTIAGKYAEPYIGIF 180 Query: 65 DQQTKSRIRVDSFPAASEL-----------INQLMTAMIAGVRNNPVLRHKLFQIDYLTT 113 + + + + P L I++L + + +LR+ + ++ + Sbjct: 181 RRSSHDVVDLCDCPIHHHLVNRVVEVVRRGISRLKVPVYSPRNRVGLLRYLVVRV---SE 237 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYI---DE 170 +A+V + ++ +E A +R+ L + + + I D+ Sbjct: 238 AEQKAMVVFVTARRSYNEIHHLARYVREQLPEVEVVAQNVNSSEGNVIMGPVDHFLTPKH 297 Query: 171 RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALA 229 L E+ SF Q N + E + + + + +L+LYCG G +L LA Sbjct: 298 HLTERIGEVSLMISPRSFLQVNRDGACLIYERVAEWARLTGRETVLDLYCGIGGIALTLA 357 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 R RV+ E+ + +V A+ N N I N E +L+ + Sbjct: 358 RRARRVIGVEVVEAAVEDARRNARMNGISNCVFQAGDVAE------------QLEELAED 405 Query: 290 SYQCETIFVDPPRSGLDSETEKMVQAY-PR-ILYISCNPETLCKNLETLSQ-THKVERLA 346 + + ++PPR G D + + V A PR +LY+SC+P+TL ++L L + + Sbjct: 406 GEGVDVVVLNPPRKGCDEQVLRQVAALGPRTVLYVSCSPQTLARDLNLLKSLGYVCVEVQ 465 Query: 347 LFDQFPYTHHMECGVLLTA 365 D FP+T H+E L Sbjct: 466 PVDMFPHTMHVENVARLEK 484 >UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacteroidetes RepID=B3EU44_AMOA5 Length = 468 Score = 253 bits (646), Expect = 8e-66, Method: Composition-based stats. Identities = 68/401 (16%), Positives = 146/401 (36%), Gaps = 59/401 (14%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWH----- 54 Y AQLA K ++ + + + P +YR + E+ + Sbjct: 85 QWQHIDYSAQLAAKEQLVKEKLIRLGRIVNPPVAKILAADPNQYYRNKLEYTFSNKRWLT 144 Query: 55 -------DGDDLYHIIFDQQT--KSRIRVDSFPAASELINQLMTAMIAGVR--------- 96 D Y + F + + + +E N + A+ R Sbjct: 145 QQEIQSDQPLDRYALGFHKPGYFDKVVDIQHCYLQAEPSNAIRLAVGQFAREHGYSFYDF 204 Query: 97 --NNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIG 154 + +LR+ + + TT + + +V + + + + + ++ +++ Sbjct: 205 RSHQGLLRNLIVR----TTSTGEVMVIVQFGENQEGPIVHIMDFIQKKFPTLTSLQYIVN 260 Query: 155 R-------ATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT 207 + Q +I E + + ++ SF Q N+ + + D+ Sbjct: 261 TKYNETFYDLEVHCYAGQPFITEVI----DGLQWQIGPKSFFQTNSTQAKVLYQTVADLA 316 Query: 208 KGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMA 266 +L+ +LY G G + LAR +V+ E+ + ++ AQ N N + NV Sbjct: 317 NLQGHELVYDLYTGVGTIAHFLARKARQVVGIEMIESAIKDAQINAQLNQLSNVSFWLGD 376 Query: 267 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISC 324 ++ + + + + + I DPPR+G+ + + + A +I+Y+SC Sbjct: 377 MKDIFN-----------EELLKECGRPDIIVTDPPRAGMHPDVVQQLLQVAPEKIIYVSC 425 Query: 325 NPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 NP T +++ L + + D FP+T H+E +L Sbjct: 426 NPATQARDIHDLQDRYVLTHAQPIDMFPHTSHVENVAVLVK 466 >UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6H3_COPPD Length = 438 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 86/380 (22%), Positives = 148/380 (38%), Gaps = 40/380 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS----DLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L Y+ QL K + + D V V + YR +A F + +++ Sbjct: 77 QLQHISYQEQLQWKSNFASQNLWKLAREKVDNVHIVPSDLLYGYRAKAHFTFG-EENNIL 135 Query: 61 HIIFDQQTKSRIRVDSFPAASELI----NQLMTAMI-----AGVRNNPVLRHKLFQIDYL 111 +I + ++ + + P E + +++ + + +N LRH ++ L Sbjct: 136 NIGYFSKSDKWFALTTCPILKETLWVTAQDVLSVLRKHDLKSYFTSNGTLRHLQVRVSLL 195 Query: 112 TTLSNQAVVSLLYHKKLDDEWRQEA--EALRDALRAQNLNVHLIGRATKTKIELDQDYID 169 T Q +V+ K + +E + QN + + Y+ Sbjct: 196 TGEK-QVLVTFTQFPKNFENVAEEILSAGISSLALHQNTAQNKTVIGKGATLYNGNQYVQ 254 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLAL 228 E+L +Y SF Q N ++ ALD + D++ E Y G G F+L Sbjct: 255 EQLM----GKVYNITPVSFFQINPVQAEKLFSIALDYLEPQPEDIVFEGYSGVGAFTLLY 310 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 A+ V+A E + +V A N A N++DNVQ + EE ++ Sbjct: 311 AQKVKTVIAAEGVEEAVQQACKNAALNNVDNVQFLAKPVEEAAGSLQ------------- 357 Query: 289 KSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ-THKVERL 345 + + VDPPR+G+ E V RI+YISC+P TL +++ + + + Sbjct: 358 --QKINKVVVDPPRNGMTQEALNAVARLQPERIVYISCDPSTLARDISRFQPFGYSLNHI 415 Query: 346 ALFDQFPYTHHMECGVLLTA 365 D FP T H+EC LL Sbjct: 416 QAIDMFPQTTHVECVALLIK 435 >UniRef50_D2MNL8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNL8_9FIRM Length = 386 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 72/379 (18%), Positives = 147/379 (38%), Gaps = 44/379 (11%) Query: 9 EQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQT 68 + Y Q+ K L+ + P ++P + HYR + + ++ ++ Sbjct: 17 QPYANQIRWKQAVLERLF-PKETVLPMLKDKNPDHYRHKIYATFGKNAQGIFLGLYGYHN 75 Query: 69 KSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDYLTTLSNQ 117 + + N+++ + R +LRH +I ++ + Sbjct: 76 HRLVNSMDCLIQHKKGNEILRTLCELANDFHLSVYQEDRRKGLLRHVYLRI---SSKDEK 132 Query: 118 AVVSLLY-------HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDE 170 ++ L+ KKL ++ + + N I + ++ + Y+ + Sbjct: 133 VMMVLVLGEKKFPGSKKLVKILLEKHPEIETVILNYNFRKTSIVLGEQERVVYGKGYLMD 192 Query: 171 RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALA 229 ++ + +R +SF Q N ++ + A+++ K +++ G G SL LA Sbjct: 193 KI----DGLSFRISSHSFYQVNPKQAYRLYQRAIELANLKKEMKVVDACSGTGTISLLLA 248 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 R+ V+ E+ +V A N N I NVQ ++ EE Sbjct: 249 RHVQSVIGIELNPQAVFDANENKKVNQIQNVQFLQGRVEEVIPRYR-------------- 294 Query: 290 SYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQTHKVERLAL 347 Q + +F+DPPRSG+ + P+I+YISC+P T ++++ L + + Sbjct: 295 -IQADVLFLDPPRSGMGPCFMTYLDQLKIPKIVYISCDPNTQARDIQILKSHYSITVSQG 353 Query: 348 FDQFPYTHHMECGVLLTAK 366 D FP T ++E ++L K Sbjct: 354 VDMFPQTKNIENILVLERK 372 >UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22 Tax=Gammaproteobacteria RepID=RUMA_XANC8 Length = 444 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 80/375 (21%), Positives = 155/375 (41%), Gaps = 34/375 (9%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH-DGDD 58 +HL Q Q+ K L + + P+ + YR + F + + D Sbjct: 92 QHLEESQ---QIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGYRRKGRFSVRRVEKKD 148 Query: 59 LYHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + F + + + I + + + A V + + QI+++ + Sbjct: 149 KTLVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMD-GKRDIPQIEFIAG-DDA 206 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLI--GRATKTKIELDQDYIDERLPVA 175 +++ + + L ++ +AL + +A + + L G + + + + RLP Sbjct: 207 VALTIRHLQPLSA---RDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQEVPLSFRLPKW 263 Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDR 234 E+ +R F Q NA++N +M+ AL + D +L+L+CG GNF+L LAR Sbjct: 264 DVELAFR--PLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARTVRE 321 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 V+ E VA A+ N N +DN Q + + +R + Sbjct: 322 VVGVEGDAGLVARARENAQRNGLDNAQFYAADLTQDQRQTAWMR------------QGFD 369 Query: 295 TIFVDPPRSGLDSETEKM-VQAYPRILYISCNPETLCKNLETL--SQTHKVERLALFDQF 351 + +DPPRSG +++ ++ + RI+Y+SC+P +L ++ L Q + D F Sbjct: 370 KLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMF 429 Query: 352 PYTHHMECGVLLTAK 366 P+T H+E + + Sbjct: 430 PHTAHVESIAVFEKR 444 >UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJ40_9FIRM Length = 450 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 166/386 (43%), Gaps = 52/386 (13%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV-SHYRMRAEFRI------------WHDG 56 YE +L K +++ + PE+F SP+ + YR + E+ H Sbjct: 88 PYEYELKLKQRQIKELFEDVYSEEPEIFESPLKTAYRNKMEYTFADMYKDSPIMLGMHKK 147 Query: 57 DDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR---NNPVLRHKLFQIDYLTT 113 + Y +I D + + + +D + +I+ + + V+ + +LRH + + Sbjct: 148 NRFYEVI-DTKECNLVHIDFEIIRNAVIDFVREKNLPFVKKRTHEGLLRHLIIR---YAL 203 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEAL---------RDALRAQNLNVHLIGRATKTKIELD 164 + + +V+++ + + + + + L + + +N ++ K I Sbjct: 204 TTGEIMVNIVTTTQSEFDSKSFVDMLLGLKLEGNIKSIVHTENDSLADAVVPEKINIIFG 263 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGN 223 ++YI E++ ++ ++ SF QPN I + A+++ + ++ +LY G G Sbjct: 264 KEYITEKI----FDLEFKVTPFSFFQPNVFGAINLYSKAIELCGDIENKVVFDLYSGTGT 319 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 +AR V EI + +V +A + N + N I L Sbjct: 320 IGQIVARKAKAVYGIEIVEEAVESANKSAKENGLTNCTFIAGDV---------------L 364 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ-TH 340 + I+ + + I VDPPR G++ + + + + I+YISCNP+T ++++ L Q + Sbjct: 365 EEIENRKEMVDVIIVDPPRDGINQKALEKIISCGAKTIVYISCNPKTQKRDIQILLQNGY 424 Query: 341 KVERLALFDQFPYTHHMECGVLLTAK 366 K+ L +F+QFP T H E LL + Sbjct: 425 KLITLKIFNQFPRTVHCEAVALLERR 450 >UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10VH2_TRIEI Length = 485 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 77/415 (18%), Positives = 154/415 (37%), Gaps = 82/415 (19%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS-----HYRMRAEFRIWHDGDDLYHIIFD 65 YE QL K ++ + L ++ YR + + + + + Sbjct: 92 YEYQLQAKQNQVIQALERIGGLKLPEVDPTLASVSTFGYRNKVTYPLSISNEGEVKAGYY 151 Query: 66 QQ-TKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQIDYLTT 113 Q+ + I ++ P + N L+ + + +LRH +I T Sbjct: 152 QKGSHKLINLNQCPIQDQRFNPLLKEIKQDITRRKWKIYDEHKRIGILRHLSLKIGEKT- 210 Query: 114 LSNQAVVSLLYHKKLDDEWR-------QEAEALRDALRAQNLNVHLIGRATKT------K 160 + +++L+ + ++ + Q + L D R + ++ +AT T Sbjct: 211 --GEIILTLVVNGSEENPEKLLPGITVQAQKWLEDYSRLVGVCLNYNSKATNTIFGQQTV 268 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYC 219 + Y+ E+ + ++ N+F Q N +++E + S +++ + YC Sbjct: 269 CVAGRFYVREKFS----GLEFQLTPNTFFQVNTKTTEKLVEIVIQELALSNSEIIVDAYC 324 Query: 220 GNGNFSLALARNFDRV-------------------------LATEIAKPSVAAAQYNIAA 254 G G F L+LA+ +V + E+ ++ A++N Sbjct: 325 GVGTFCLSLAKYLQQVDINYNESLNIVTEDLSEIKLRKSMVIGLEVQGVAIEQAKFNAKI 384 Query: 255 NHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEK-MV 313 NH+ NV E + + + + +DPPR G D + ++ Sbjct: 385 NHLTNVHFYEGKVERLLPQLE---------------VKPDIVLLDPPRKGCDRSVLETLL 429 Query: 314 QAYP-RILYISCNPETLCKNLETLS--QTHKVERLALFDQFPYTHHMECGVLLTA 365 + P RI+YISC P TL ++L+ L + + ++ D FP T H+EC L Sbjct: 430 EILPERIVYISCKPATLARDLKFLCSTGKYCLNKVQPVDFFPQTAHVECAAFLIK 484 >UniRef50_UPI000196C3B9 hypothetical protein CATMIT_02351 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C3B9 Length = 479 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 72/381 (18%), Positives = 142/381 (37%), Gaps = 38/381 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-DLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHII 63 + Y L K + + ++ P +YR + + + + Sbjct: 13 QFINQGYVKSLEYKNEECKKIFKDLKVNVHPVSGMEDPYYYRNKTIIAFDKTYN---YGL 69 Query: 64 FDQQTKSRIRVDSFPAASE-----------LINQLMTAMIAGVRNNPVLRHKLFQIDYLT 112 +++ + I S + L + ++ R +RH L + T Sbjct: 70 YEENSHRIIPYKSCLIHDQETDAIISKIAILFRKYRVSIYDPQRRRGEIRHILIRRAVKT 129 Query: 113 TLSNQAVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYI 168 + +VS K ++ + +++ + N I + K+ + +I Sbjct: 130 NQTLVVIVSNEAIFKGSKNFCNQLVKAFPSIKSIVLNTNKRQTSIVLGEQEKVLFGKGFI 189 Query: 169 DERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLAL 228 + L M ++ SF Q N + AL + +++ YCG G L Sbjct: 190 VDEL----CGMTFKISPRSFYQINHDQCEALYSKALSLITVKDPKIMDTYCGIGTIGLIA 245 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 ++N +V+ E+ K +V A+ N N ++N++ I+ A EF Sbjct: 246 SKNAKQVIGVELNKDAVKDAKLNKTFNKVENIKFIQGDATEFM------------VEAAK 293 Query: 289 KSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKVERL 345 + + I +DPPRSG K I+Y+SC+P T ++L+ + + + + Sbjct: 294 QKVDVDVIIMDPPRSGSTETFIKAAVSLKPKEIVYVSCDPHTQVRDLKLFRKLGYDFKDV 353 Query: 346 ALFDQFPYTHHMECGVLLTAK 366 +D FP+T H+E VLL+ K Sbjct: 354 YPYDMFPFTSHVETVVLLSHK 374 >UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTT0_9FIRM Length = 518 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 81/366 (22%), Positives = 159/366 (43%), Gaps = 35/366 (9%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFR----SPVSHYRMRAEFRIWHDGDDLYHIIFD 65 +YE L K + + + S+L +V + +YR +F++ + ++ Sbjct: 85 KYEKSLDWKKQSVNNKLQRISELDIKVSKVNSSEKTFNYRNNMQFQV----KNGKIGLYM 140 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 + +K + ++ S N+ + + L K+ + T +Q ++ + Sbjct: 141 KNSKEIVPIEHCLMQSTNANK----TLKILTKFKNL-EKIKTLGIRTNYKDQVMLIISSK 195 Query: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ---DYIDERLPVAGKEMIYR 182 +K++ + L D + A ++++ K D+ Y E L ++ Y+ Sbjct: 196 EKIN----KLNLILGDLIDANVVSIYENINNRKNAHYGDEFNLLYGQEYLEEKINKLYYK 251 Query: 183 QVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIA 241 SF Q N + A++ + + + + +LY G G SL +A + L EI Sbjct: 252 LSPASFFQVNREQAENLYNKAMEFLQVKENEKIADLYSGVGTLSLEIASRKAQTLGVEIV 311 Query: 242 KPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPP 301 + ++ A+ N N + + I +EE + + + + + I VDPP Sbjct: 312 EEAIEDARINAQKNKL-QARFICGKSEEILEKIQTDEKI-----------KMDKILVDPP 359 Query: 302 RSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMEC 359 R G+D + + Y +I+YISCNP TL ++L+ L + +KVE++ +FD FPYT H+E Sbjct: 360 RKGMDKKLVDYLNKNSYEKIVYISCNPATLARDLKILKEKYKVEKVEIFDLFPYTSHVEV 419 Query: 360 GVLLTA 365 LL+ Sbjct: 420 ITLLSK 425 >UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FU98_9FIRM Length = 498 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 85/428 (19%), Positives = 159/428 (37%), Gaps = 96/428 (22%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLV------PEVFRSP-VSHYRMRAEFRIW--HDGDDLY 60 Y+ QL K +++ +M D + SP + YR + EF L Sbjct: 88 PYDRQLEMKAEQVKKLMDDVIDQENRDYQFLGIKESPRQTGYRNKMEFSFGDEFKDGPLA 147 Query: 61 HIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAG-----------VRNNPVLRHKLFQI 108 + + + + V++ E ++++ +A +R+ LRH L + Sbjct: 148 LGMHKRGSFYDIVTVENCQIVDEDFRKILSVTLAYFREKNITYYHKLRHTGYLRHLLVRK 207 Query: 109 DYLTTLSNQAVVSLLYHKKLD--------------------------------DEWRQEA 136 T + +V L+ + D + W+ Sbjct: 208 AVKT---GEILVDLVTTTQTDFPGIAAAQMDEVESTLNNAQENAFAGTEEELLEGWKAAL 264 Query: 137 EA------LRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQ 190 A + L +N NV T + QD+ E L + ++ SF Q Sbjct: 265 LAADYKGIMTGILHTRNDNVADTVTNEGTDVLYGQDFFYEEL----LGLRFKITPFSFFQ 320 Query: 191 PNAAMNIQMLEWALDV------------TKGSKGDLLELYCGNGNFSLALARNFDRVLAT 238 N+ + + A + + +LY G G + L+ +V+ Sbjct: 321 TNSLGAEVLYQTAREFIGDALPSGTDADIAEHGKIVFDLYSGTGTIAQMLSPVAKKVIGV 380 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 EI + +V AA+ N N + N + I L+ ID + + I + Sbjct: 381 EIIEEAVEAAKENAQLNGLHNCEFIAGDV---------------LKVIDSIEEKPDYIVL 425 Query: 299 DPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTH 355 DPPR G++ + + + Y P+++YISC P +L ++LE L ++ ++V+++ D FP T Sbjct: 426 DPPRDGINPKALEKIIRYNVPQMVYISCKPTSLARDLEVLQARGYEVKKVCCVDMFPSTF 485 Query: 356 HMECGVLL 363 H+E VL+ Sbjct: 486 HVESVVLM 493 >UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4RQV8_OSTLU Length = 536 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 74/404 (18%), Positives = 143/404 (35%), Gaps = 46/404 (11%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLVPE--------VFRSPVSHYRMRAEFRIWHDGDD 58 Y+AQ+ K R+ ++A + V S YR + EF Sbjct: 134 QHVNYDAQVGHKRNRVVDVLARIYKAGEDAEAKVGACVGADETSRYRNKMEFAFASGTRG 193 Query: 59 LYHIIFDQQTKSRIRVD---SFPAASELINQLMTAMIAGVRN-------------NPVLR 102 + + + VD SE ++++ A+ + LR Sbjct: 194 KTVVGLRPRGANDSVVDLSGGCLLQSEEADRVLAAIRETLERADGRLEAFDRTSGEGTLR 253 Query: 103 HKLFQ-IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI 161 + +V L ++ L D + V ++ + T Sbjct: 254 SVTIRTAGGERGGEKAVMVDLATTASPNELKTGPLAGLIDVVSKVPGVVSVVHTSGGTTT 313 Query: 162 ELDQD------YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-- 213 + + + +L + + SF Q N +++ + S Sbjct: 314 KAGSTKKVEAVFGENKLVETLNGIDFELSSASFFQTNTEQAARLVRQVREACAFSGDKSE 373 Query: 214 -LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ 272 +L+L+CG G L++A + RV+ E+ +V A+ N N+I N + R+ Sbjct: 374 IVLDLFCGVGTMGLSVASDCSRVMGWEVVPEAVKDAKRNAELNNITNAKFYRVDLARLNP 433 Query: 273 AMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLC 330 + +G +L + + DP R G+DS +++ RI+Y+SCNP T Sbjct: 434 SKGPKGLLTTPKGKELP--MPDIVITDPARPGMDSALIAILRTIGARRIVYVSCNPATQA 491 Query: 331 KNLETLSQ--------THKVERLALFDQFPYTHHMECGVLLTAK 366 ++L L+ ++++ + D FP+T H+E +L K Sbjct: 492 RDLLLLTAPSEGADDVAYELKTVTPVDMFPHTTHVESVAVLERK 535 >UniRef50_D0J1B5 RNA methyltransferase, TrmA family n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J1B5_COMTE Length = 519 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 79/406 (19%), Positives = 154/406 (37%), Gaps = 58/406 (14%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH--DGD 57 +HL AQ+A K L+ + + + PE P+ YR R+ + + Sbjct: 127 QHLHV---AAQVAIKQRVLEDNLWHLAKVKPETLLRPIEGPAWGYRFRSRLSVRYVAKKG 183 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + +++++ ++ ++ ++ M A + + R QI+ Sbjct: 184 KVLVGFHERKSRYIADMEVCKILPPHVDAMLMPMRALIASMDA-RETCPQIEVACGDH-- 240 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL--DQDYIDERLPVA 175 V+ L + L+ + + LRD QN+ L + T + + LP Sbjct: 241 --VTALVLRHLEPLSDADKQRLRDFAAEQNVQWWLQPKGPDTVHLMEEGGTQLSYGLPDF 298 Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDR 234 G M ++ FTQ N +N ++ +L + K + +++ +CG GNF+L +A Sbjct: 299 GITMPFK--PTDFTQVNPHINRVLVTRSLRLLDAKKDERVIDWFCGLGNFTLPIATMARE 356 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 VL E ++ V + N AAN++ + ++A+ F F + + + Sbjct: 357 VLGIEGSETLVKRSHENYAANNVTRSEDDKLASTSFV----ARNLFEMTPAMLIADGNSD 412 Query: 295 TIFVDPPRSGLDSETEKMV---------------------------------QAYPRILY 321 VDPPR G + ++ + Q RI+Y Sbjct: 413 KWLVDPPREGAFALSKALADIHQIRIGAKQTGVASEEQPDLLPPLPEGQESWQFPKRIVY 472 Query: 322 ISCNPETLCKNLETL--SQTHKVERLALFDQFPYTHHMECGVLLTA 365 +SCNP TL ++ L ++ + + FP+T H+E + Sbjct: 473 VSCNPATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 518 >UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=Lactobacillales RepID=B1MWX6_LEUCK Length = 498 Score = 251 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 144/388 (37%), Gaps = 41/388 (10%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPF-------SDLVPEVFRSPVSHYRMRAEFRIWHDG 56 L Y AQLA K + + F DL + + YR +A+F + Sbjct: 126 FELEHMTYSAQLAFKKDVIAQSLEKFQPKGWSDYDLRDTIGMANPYEYRNKAQFPVRKID 185 Query: 57 DDLYHIIFDQQTKSRIR-----------VDSFPAASELINQLMTAMIAGVRNNPVLRHKL 105 D L ++ + + + + +L+++L ++ +N ++ + Sbjct: 186 DVLSVGMYKRGSHELVDLPIVHTQSPATMKVLRTVRDLLDKLSVSIYNEDKNRGTVKTIV 245 Query: 106 FQIDYLTTLSNQAVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI 161 ++ + T V+ L Q + + N + +T Sbjct: 246 ARVSHTTGDVQLTFVTNTDGFPGDVALIAAINQALPEVNGIFQNFNPGRTSLVWGEETIK 305 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCG 220 +DYI+E + ++ +F Q N + AL + D L++ Y G Sbjct: 306 LWGKDYIEETVM----GKTFQLSPRAFMQLNHTQMTVVYNEALSALNLTHADKLVDAYAG 361 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G L+LA V EI +V A N NHI N + AE Sbjct: 362 VGTIGLSLADKAGEVRGMEIIPEAVDDANINAKINHISNAKYEVGTAEVLFPKWQAEGWL 421 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEK-MVQAYP-RILYISCNPETLCKNLETLSQ 338 + + VDPPR+GLD+ + +++ P + +YISCN TL ++L L++ Sbjct: 422 ------------ADALVVDPPRTGLDTALRREIIRTKPEKFVYISCNASTLARDLVDLTK 469 Query: 339 THKVERLALFDQFPYTHHMECGVLLTAK 366 +KV+ + D FP T E V LT + Sbjct: 470 AYKVDYIQSIDMFPQTARWEGVVKLTRR 497 >UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W3B9_NEICI Length = 461 Score = 251 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 154/373 (41%), Gaps = 30/373 (8%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGDDL 59 +H+ AQ+A K ++ + + P+ P+ HYR RA F + D Sbjct: 93 QHISP---TAQVAFKQRIMEEQLERIGKVKPKQILPPIYGHVWHYRDRARFSVSLDKSCR 149 Query: 60 YHIIFD-QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + F ++T + + S + ++ + A+ +++ ++ S Sbjct: 150 LKLGFQAKKTNDVVGISSCMLIPKPVSDKLPAIRELLQDLAEGGSIARFAEFY-RGSEIT 208 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLI--GRATKTKIELDQDYIDERLPVAG 176 V+++ + KL D+ + + + L G+ ++ + LP G Sbjct: 209 VLNIAFKSKLRQNDESRIRQWFDSELSDDWQIWLQIEGKVSEPFYPQKDTILKYTLPEFG 268 Query: 177 KEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRV 235 EM +R FTQ N N M+ A+ + +G+ + +L+CG GNFSL +A++ V Sbjct: 269 IEMPFR--PGDFTQINTDTNRLMVSRAIKMLDIRQGERVADLFCGLGNFSLPIAKSGASV 326 Query: 236 LATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 + E A+ V A+ N N I AA F N V + + + Sbjct: 327 VGVEGAENLVGRARQNARLNGCGGQTDFI--AANLFDCTENTVASWGKF----------D 374 Query: 295 TIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETL-SQTHKVERLALFDQF 351 + +DPPRSG + Y +I+Y+SCNP TL ++ L + + + ++ + + F Sbjct: 375 KMLIDPPRSGAYEVVRSLKPPYLPKKIVYVSCNPSTLARDAGVLVEKGYILGQVGIMNMF 434 Query: 352 PYTHHMECGVLLT 364 +T H+E + Sbjct: 435 AHTSHVESIAVFE 447 >UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GTB6_SYNR3 Length = 455 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 73/377 (19%), Positives = 143/377 (37%), Gaps = 43/377 (11%) Query: 12 EAQLAEKVVRLQSMMAPFSD----LVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQ 67 +AQ K +LQ+ + + P V YR RA + + L F + Sbjct: 92 QAQSEWKQQQLQNTLRRVGRLECLVEPIRSTQAVLGYRNRAIIPVQERDNSLKAGFFQRG 151 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDYLTTLSN 116 + + ++ P ++ L+ + A ++ +LR + + + Sbjct: 152 SHQVVNMNHCPVLDPRLDALIEPLKADLQAAGWPIYNEDTQKGLLRQLVLRAGVSSGEVL 211 Query: 117 QAVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERL 172 VV ++L ++W Q L + K ++ + ++ E Sbjct: 212 LGVVVRDDQFQGAQELAEQWMQRWPELVGVVLNVQPKPGNTLLGPKERLLAGRPWLMESF 271 Query: 173 PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLALARN 231 ++ +F Q + +++ + G++L + YCG G L L + Sbjct: 272 A----GRRFQIGLGTFFQVHHQQAEALVDALRSELQLQSGEVLVDAYCGVGTLGLPLIQE 327 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY 291 R++ E ++ S+ AQ N N +++ + E Q Sbjct: 328 GVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSVERRLQEFLPF-------------- 373 Query: 292 QCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLS--QTHKVERLAL 347 + + +DPPR GLD+ + ++ P R+ Y+SCNP TL ++L L Q ++ ++ Sbjct: 374 -TDVLLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLARDLALLCADQRFELTKVVP 432 Query: 348 FDQFPYTHHMECGVLLT 364 FD FP T H+E +LT Sbjct: 433 FDFFPQTTHIEAMAILT 449 >UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=72 Tax=Bacteria RepID=Y1095_PORGI Length = 465 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 75/406 (18%), Positives = 153/406 (37%), Gaps = 62/406 (15%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS-----HYRMRAEFRIWH---- 54 +H+P YE QL K ++ + + E + + +YR + EF + Sbjct: 75 QHIP---YEIQLRAKEQQVTDALVRLGKVEVEEMQPILGSEQTEYYRNKLEFTFSNKRWL 131 Query: 55 --------DGDDLYHIIFDQQTK------SRIRVDSFPAASELINQLMTAMIAGVRNNPV 100 DGD + + + + +++ +++ + +P Sbjct: 132 LPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIRLFIREYCMQDPE 191 Query: 101 ------LRH---KLFQIDYLTTLSNQAVVSLLYH-------KKLDDEWRQEAEALRDALR 144 LR+ + + TT + + +V +++ + L + + L Sbjct: 192 RYPFFDLRNQEGLMRTLMIRTTSTGELMVVVVFFRDDVAAREALLAAVAERFPQITSLLY 251 Query: 145 AQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWAL 204 N + + + ++YI+E + + + ++ SF Q N+ Q+ A Sbjct: 252 VINTKCNDTIGDQEVLLYHGREYIEEEM----EGLKFKIGAKSFYQTNSRQAYQLYRIAR 307 Query: 205 DVTKGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQII 263 + + +L+ +LY G G + +A RV+ E ++ A+ N N I+N Sbjct: 308 EFAGLTGDELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTLFY 367 Query: 264 RMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILY 321 ++ +F G + + + DPPR+G+ + A RI+Y Sbjct: 368 AGDMKDIL-----TNDFIEQHG------RPDVVITDPPRAGMHESVIDAILFAAPRRIVY 416 Query: 322 ISCNPETLCKNLETL--SQTHKVERLALFDQFPYTHHMECGVLLTA 365 +SCNP T ++L L ++ + D FP+THH+E VLL Sbjct: 417 VSCNPATQARDLALLMADGRYRAVKSRPVDMFPHTHHVENVVLLVR 462 >UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12 Tax=Burkholderia cepacia complex RepID=RUMA_BURCM Length = 465 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 83/383 (21%), Positives = 149/383 (38%), Gaps = 44/383 (11%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH--DGD 57 +HL AQ+A K L+ + + L E +P+ YR RA + + Sbjct: 105 QHLDM---RAQVAIKQRVLEDNLWHLAKLRAETVFAPIHGPSWGYRYRARLTVRNVAKKG 161 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + ++++ + S ++ ++ + V + R ++ QI+ Sbjct: 162 GVLVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGLSI-RDRMPQIELAVGSQ-- 218 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELD--QDYIDERLPVA 175 V+ L + L+ + LR + L + T +D LP Sbjct: 219 --VTALVLRVLEPINADDEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVPLDYTLPEF 276 Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDR 234 G M ++ FTQ N +N ++ AL + S+ D +L+L+CG GNF+L LAR Sbjct: 277 GIRMPFK--PTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSRE 334 Query: 235 VLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY-Q 292 V+ E + A N N +D + E T G DL++ Sbjct: 335 VMGIEGSDTLTTRALANARENGVDGHTTFACRNLFEVT-------------GDDLRALGA 381 Query: 293 CETIFVDPPRSGLDSETEKMVQ--------AYPRILYISCNPETLCKNLETL--SQTHKV 342 + +DPPR G + ++ + + RI+Y+SCNP TL ++ L +++ Sbjct: 382 FDKFLIDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRL 441 Query: 343 ERLALFDQFPYTHHMECGVLLTA 365 + + + FP T H+E L Sbjct: 442 KGAGVVNMFPNTSHVESIALFER 464 >UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chromatiales RepID=D0L0T9_HALNC Length = 442 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 76/373 (20%), Positives = 151/373 (40%), Gaps = 31/373 (8%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRI-WHDGDD 58 +HL +E+ QLA K L + + P + YR +A + + Sbjct: 87 QHLTSEK---QLATKEQALLDQLQRIGKVSPATVLPALARANWGYRRKARLGVKYVQKKG 143 Query: 59 LYHIIFD-QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + F + T + + + + +T + + ++ R ++ QI+ Sbjct: 144 RVIVGFRERHTHFLSDLQNCRVLDPRVGERLTEI-GEIIHSLEARERIPQIEVACGDDRV 202 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYI-DERLPVAG 176 A+V + LD + + E LR+ + +++L + + LD+ ++ Sbjct: 203 ALV----FRNLDPLSQSDKEKLRNFGTQEGFDIYLQPGSNDSVHPLDKAHVAPLTYAHPS 258 Query: 177 KEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRV 235 ++ F Q N +N M+ AL+ GD +L+L+ G GNF+L +AR +V Sbjct: 259 FDVSIEFTPLDFIQINTDVNRAMIVQALEWLDVQPGDHVLDLFAGLGNFTLPIARKAAKV 318 Query: 236 LATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCET 295 A E+ + V + AAN I N + + F + Sbjct: 319 TAVELDEHMVKRGAQSAAANGITNTEHVIGNL------------FEPDPTHLWMQQTYDR 366 Query: 296 IFVDPPRSGLDSETEKMVQAYP-RILYISCNPETLCKNLETLSQ--THKVERLALFDQFP 352 + +DPPR+G ++ + + P RI+Y+SC+P +L ++ L + +++ + D FP Sbjct: 367 VLLDPPRAGAEAMMPHIARFAPERIVYVSCHPGSLARDAHILVREHGYRLIAAGVMDMFP 426 Query: 353 YTHHMECGVLLTA 365 +T H+E + Sbjct: 427 HTSHIESMAVFER 439 >UniRef50_B6BUM1 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=Betaproteobacteria RepID=B6BUM1_9PROT Length = 437 Score = 249 bits (637), Expect = 9e-65, Method: Composition-based stats. Identities = 82/376 (21%), Positives = 162/376 (43%), Gaps = 36/376 (9%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRI-WHDGDD 58 +H ++ +Q+ K + +VPE P+ S YR +A R + D D Sbjct: 80 QHF---KHSSQIEFKNNAFFQTLKHVGKVVPESQIEPIFLEFSEYRHKARLRAKYVDKKD 136 Query: 59 LYHIIFDQQ-TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + F+++ T +DS I+ + + + ++N + +++ QI+Y + Sbjct: 137 KVLVGFNERLTHFLTDMDSCEVLPGRISSCLGEIKSLIKNLSIY-NRMPQIEYASNGDRD 195 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL--DQDYIDERLPVA 175 + + LD ++ + L + A+N+ + + +T L ++D P+A Sbjct: 196 IFI----FRILDPLSIEDIKKLSEFSNARNIEIWTQSKGPETVKPLFPERDSEIISYPIA 251 Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDR 234 E+ + F Q N +N M++ AL++ + D +++ + G GNF+L +A+ Sbjct: 252 KYELNLEFNPSGFIQINPYINQLMIDKALELLNLNPQDEVVDFFSGLGNFTLPIAKYAHS 311 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF-TQAMNGVREFNRLQGIDLKSYQC 293 V+ E ++ V Q N N+++NV E +N ++ N+ Sbjct: 312 VIGIEGSEDLVNLGQKNAGLNNLNNVSFQYSNLFEVDVDFVNSLKNKNKW---------- 361 Query: 294 ETIFVDPPRSGLDSETEKMVQ---AYPRILYISCNPETLCKNLETL--SQTHKVERLALF 348 +DPPR G E + + I+Y+SCNP TL ++ L + +K + + Sbjct: 362 ---LLDPPRDGAMQLLELISKDTMLPETIVYVSCNPATLARDANILVNDKGYKYQSAGIL 418 Query: 349 DQFPYTHHMECGVLLT 364 + FP+T H+E L T Sbjct: 419 NMFPHTSHIESISLFT 434 >UniRef50_A1SSB8 23S rRNA (uracil-5-)-methyltransferase rumA n=2 Tax=Psychromonas RepID=RUMA_PSYIN Length = 444 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 152/370 (41%), Gaps = 31/370 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGDD--L 59 L AQ+ K L S+ F+ VP+ P+ YR A F + D + L Sbjct: 94 LQHLNQAAQIQIKSDGLLSLFQRFAKKVPQQLEKPIIDKAWEYRRTARFGLQFDKKNKQL 153 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + Q+ I P + L+ + + + H L ++ L ++Q Sbjct: 154 KMGLRRAQSNELIDQKVCPVLLPELECLIPPLKILLNSLQCKAH-LGHVELL--YADQGA 210 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 V LL H K + + + Q +N + ++ + + RLP + Sbjct: 211 VVLLRHMKTLTS--PDLQLITAFSALQKVNFFGQASSNQSVCLAGEANLSYRLPEWDCSL 268 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLAT 238 + F Q N+ +N +M+ A+ K D +L+L+CG GNF+L +AR + V+ Sbjct: 269 SF--TPTDFLQVNSDINKKMVSQAMQWLALEKNDSVLDLFCGLGNFTLPIARQVESVVGI 326 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAA--EEFTQAMNGVREFNRLQGIDLKSYQCETI 296 E + V A N N++ N + + E + + FN+ + Sbjct: 327 EGVQQMVDRATANAQLNNLQNARFYQADLSGENLIEQEWANQNFNK-------------V 373 Query: 297 FVDPPRSGLDSETEKMVQAYP-RILYISCNPETLCKNLE-TLSQTHKVERLALFDQFPYT 354 +DP R+G + Q P ILY+SC+P TL ++ + L + +K+++L L D FP T Sbjct: 374 LLDPARAGALDCLAFIAQKKPSHILYVSCDPLTLARDSQVLLDKGYKLDKLGLLDMFPQT 433 Query: 355 HHMECGVLLT 364 HME L T Sbjct: 434 AHMESMALFT 443 >UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9N7_9PORP Length = 493 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 79/412 (19%), Positives = 143/412 (34%), Gaps = 72/412 (17%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDL-----VPEVFRSPVSHYRMRAEFRIWH---- 54 + LP Y+ QL K + M + P V HYR + EF Sbjct: 88 QQLP---YDEQLRGKSQQAADAMTRIGHIAIEHTEPIVGCEDPWHYRNKVEFTFSKKRWL 144 Query: 55 -------------DGDDLYHIIFDQQTKSRI---RVDSFPAASELINQLMTAM------- 91 + + ++ + A + +++ + Sbjct: 145 TEEELKSLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQIADPIASEIRDYLNDYCLAR 204 Query: 92 ------IAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRA 145 + V+R L + TT +V + + + ++ Q EALR+ Sbjct: 205 WEEYPYYDQRAHEGVMRTLLIR----TTTLGGLMVLIAFAEGTEELRVQLLEALRERFPQ 260 Query: 146 -------QNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQ 198 N + ++ YI+E + + YR SF Q N+ + Sbjct: 261 ITSLYYMVNTKFNDSLADLPAQLYSGAPYIEENM----HGLRYRIGPKSFYQTNSRQAER 316 Query: 199 MLEWALDVTKGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI 257 + E + + +++ +LY G G + LA++ V+ E +V A N N I Sbjct: 317 LYEKVREYAQLKGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYVPEAVEDAFVNRDQNGI 376 Query: 258 DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD-SETEKMVQAY 316 N + + + + DPPR+G+D E +++A Sbjct: 377 TNATFYAGDM-----------KAILTDDFVAAHGRPDVLVTDPPRAGMDAPVVEVILRAA 425 Query: 317 P-RILYISCNPETLCKNLETL--SQTHKVERLALFDQFPYTHHMECGVLLTA 365 P RI+Y+SCNP T ++L L ++ + D FP+THH+E LL+ Sbjct: 426 PQRIVYVSCNPATQARDLALLMAEGQYRAVKACAVDMFPHTHHVETVALLSK 477 >UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas sp. RCC299 RepID=C1E1X6_9CHLO Length = 473 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 76/405 (18%), Positives = 140/405 (34%), Gaps = 63/405 (15%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS---------HYRMRAEFRIWHDGD 57 Y QL K ++ +M + + ++ V YR + EF + Sbjct: 85 QDIAYAHQLTMKRDQVVDVMTRVAKVDQTRVQNIVGDCVPSDKTERYRNKMEFAFGPGAN 144 Query: 58 DLYHIIFDQQT---KSRIRV---DSFPAASELINQLMTAMIAGVRNNP------------ 99 +I + + + + D + ++++ A + +N Sbjct: 145 GRGVVIGLRPSGNHSDLVEIGNPDGCLLQHPVADEVLRGCRAHLDSNGNSSLLDAFNRRT 204 Query: 100 ---VLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRA 156 VLR ++ A V + + DDE L +A+ G Sbjct: 205 GEGVLRSLTVRVAVDENGETIAAVDIAAATRGDDE-DAALRGLAEAIAKVRGVASSGGGD 263 Query: 157 TKTKIELDQDYIDE----RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD---VTKG 209 + +D LP+ + + + SF Q N +++ D + Sbjct: 264 ADGEGWSGEDVEVLSGAATLPMKLRGVTFALSAPSFFQTNTDQAEKLVAAVEDACGFSGD 323 Query: 210 SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 269 +L+L+CG G L +A+ V E+ +V A+ N AN I N R + Sbjct: 324 GTEVVLDLFCGVGTLGLCVAKKAKHVFGWEVVPEAVKDAERNAEANGITNATFRRGDLAK 383 Query: 270 FTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPE 327 ++ G + + DP R+G+D K++++ RI+Y+SCNP Sbjct: 384 LKASLPG----------------PDIVIADPARAGMDESLVKVLRSIGAERIVYVSCNPA 427 Query: 328 TLCKNLETLSQT-------HKVERLALFDQFPYTHHMECGVLLTA 365 T ++L L + V D FP+T H+E V+L Sbjct: 428 TQARDLLRLKGGDGGEGARYDVRYCTPVDMFPHTPHVETVVVLDR 472 >UniRef50_Q2L016 23S rRNA (uracil-5-)-methyltransferase rumA n=58 Tax=Betaproteobacteria RepID=RUMA_BORA1 Length = 476 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 83/380 (21%), Positives = 150/380 (39%), Gaps = 42/380 (11%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH--DGD 57 +HL +Q+A K L+ + P+ P+ YR RA + Sbjct: 80 QHLEP---TSQVAIKQRALEDTFWHVGKIRPQRVLPPLHGPTWGYRYRARLSVRVVPKKG 136 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + ++++ + ++ L+ + A + ++ QI+ Sbjct: 137 GVLVGFHERKSSYVADMRECHVLPRHVSDLLLPLRAMIAALSRP-ERIPQIEVALGEGVT 195 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELD---QDYIDERLPV 174 A+V L + + L+D + LRD N+ L + T LD D + +P Sbjct: 196 ALV-LRHIEPLND---HDITVLRDFAARHNVQWWLQSKGPDTVHPLDPAHGDTLAYTMPE 251 Query: 175 AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFD 233 G M YR FTQ N A+N M+ AL + + D + +L+CG GNF+L LA Sbjct: 252 FGLRMPYR--PTDFTQVNHAINRSMVSRALKLLEVQPTDRVADLFCGLGNFTLPLATQGR 309 Query: 234 RVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEF-TQAMNGVREFNRLQGIDLKSY 291 + E +K A A + ++ + + E + G+ F+R Sbjct: 310 EAVGVEGSKALTDRALEAAARHGLEGRTRFATLNLFEVDVSWLRGLGYFDR--------- 360 Query: 292 QCETIFVDPPRSGLDSETEKMVQAYP-----RILYISCNPETLCKNLETL--SQTHKVER 344 + +DPPR G + + + Q P RI+Y+SCNP TL ++ + + ++ Sbjct: 361 ----MLIDPPREGAHAVAQALSQLTPAERPRRIVYVSCNPATLARDAAIMVHEGGYVLKA 416 Query: 345 LALFDQFPYTHHMECGVLLT 364 + + FP+T H+E + Sbjct: 417 AGVINMFPHTGHVESIAVFE 436 >UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8N4_9FIRM Length = 457 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 77/374 (20%), Positives = 154/374 (41%), Gaps = 32/374 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD----LVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 L +Y AQ K L+ + ++D ++P + YR + + +LY Sbjct: 76 LMHVKYPAQCKMKEGNLKETLIKYADYNGRILPIIKNPEPLSYRNSCKLPFGEEYGELYT 135 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVL-----RHKLFQIDYLTTLSN 116 ++++ T +++ S+L+ Q A++ + + + + ++ + + Sbjct: 136 GMYERDTNHFQKMERCYVHSKLLEQTRQAVLKIMNEHHLKMYDDKKKTGYRTLVMKEFDS 195 Query: 117 QAVVSLLYHK-KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYI--DERLP 173 + + + K L +E+ + L + + TK ++ D +I +E++ Sbjct: 196 KIQIIFVTGKENLSEEFIHDVTQLEGVVSI----WQSVKTETKREVFGDMRFIWGEEKMH 251 Query: 174 VAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFD 233 + +++ + SF Q N ++ + D SK + E Y G G SL + Sbjct: 252 LQLEDIQLSLLPRSFFQLNTKQSVNLYNVVKDWMPRSKTTV-EAYSGIGAISLFVKDKAQ 310 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 ++ E + +V A N NH DNV I A + ++ Sbjct: 311 EIIGVESIQDAVDNANENAMLNHADNVSFICEDAGSALAHL-------------VQEKDV 357 Query: 294 ETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQF 351 +T+ VDPPRSGLD ++ + ++Y+SCNP TL K+L L + +++ ++ D F Sbjct: 358 DTLIVDPPRSGLDDTMKETILKSKIKTMIYVSCNPATLAKDLGVLKKEYRIVKIQPVDMF 417 Query: 352 PYTHHMECGVLLTA 365 T H+E LL Sbjct: 418 SQTPHVESVTLLVR 431 >UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6H3_HYDS0 Length = 415 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 82/369 (22%), Positives = 157/369 (42%), Gaps = 39/369 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE----VFRSPVSHYRMRAEFRIWHDGDDLY 60 H Y QL +K L+ + ++ E + HYR R +F++ + Sbjct: 75 HFQHIDYTEQLTQKSNILKETLKKIGNIEIENLNGIIYDEPYHYRNRVKFKVRNKE---- 130 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 + F + ++V+ P +S+ IN LM + ++ + + + + +V Sbjct: 131 -LGFVGVDEDFVKVEHCPISSKAINDLMPFLKEFAKHFNPSWISV----FYSDTQKEYMV 185 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI 180 + +D +++ + ++ L +N+ + + K + D+ + P E++ Sbjct: 186 KFASYDYID---KEKLKKFKEHLTPKNVVGITLVKDDKRE---DKIILSIGTPFTFIELL 239 Query: 181 ---YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLA 237 YR NSF Q N + ++L+ L+ + +L+ Y G G F L LAR V Sbjct: 240 KIKYRISVNSFFQVNIKVAQKLLQTLLE-KENYFDRVLDDYGGVGLFGLHLARRSGSVDI 298 Query: 238 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 +I K S+ A+Y+ N+I+NV + F + + Sbjct: 299 ADINKSSINDAEYSAKINNINNVSFYVQNSYVFLKKSL--------------YKHANLLV 344 Query: 298 VDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTH 355 +DPPRSGL E ++ I YISC P +L ++L+ L + ++++ + + D FP T+ Sbjct: 345 LDPPRSGLSKEEIGLILLGKPDYIWYISCEPSSLARDLKLLGKKYQIKEIYMADMFPQTY 404 Query: 356 HMECGVLLT 364 H+E V L Sbjct: 405 HIETAVKLE 413 >UniRef50_C7GZ13 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ13_9FIRM Length = 399 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 85/390 (21%), Positives = 163/390 (41%), Gaps = 63/390 (16%) Query: 13 AQLAEKVVRLQSMMAP----FSDLVPEVFRSPVSHYRMRAEFRIWH-DGDDLYHIIFDQQ 67 QL K +++++ L+P + YR + EF + + + + F ++ Sbjct: 26 EQLKIKDELVKTLIDKKGLKVDTLLPIEKSPNMYRYRNKMEFTFGNSEREGELKLGFHEK 85 Query: 68 TK--SRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDYLT-- 112 + + + S N+++ A+ ++N LRH + + T Sbjct: 86 GNYRNIVDIHSCQLVDTDYNEILNAVRQFAFQNNYDFYNKKKHNGFLRHLVIRSGIRTSE 145 Query: 113 -------------TLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKT 159 + ++ V+LL KL++E L L N + Sbjct: 146 IIVNLVTSSSDLANFNTESFVNLLTSLKLNNE-------LVGILHTVNDKIQDTANGEDI 198 Query: 160 KIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELY 218 +I +DY ER+ ++ ++ SF Q N + +A++ + ++ +L+ Sbjct: 199 RILYGRDYYMERIM----DLDFKVRMGSFFQTNVQAAENLYRYAINSIDNVQDKVIFDLF 254 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 CG G + +LA +V+ +I+ ++ +A N N I+NV R E + +N Sbjct: 255 CGTGTITQSLAGAAKKVIGVDISDDAIKSAIENTKLNKINNVSFYRGDVFEVIRNINE-- 312 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSE-TEKMVQAYPR-ILYISCNPETLCKNLETL 336 + + I +DPPR+G++++ EK+V+ PR I+YISCNP+TL NL Sbjct: 313 -------------KPDVIVLDPPRAGVNAKALEKIVEFSPREIVYISCNPKTLIDNLYFF 359 Query: 337 SQT-HKVERLALFDQFPYTHHMECGVLLTA 365 + ++ L FD F +T H+E LL+ Sbjct: 360 EYNRYNIKSLKAFDNFFFTSHVEAVALLSK 389 >UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=131 Tax=Enterobacteriaceae RepID=RUMA_PECCP Length = 449 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 76/345 (22%), Positives = 139/345 (40%), Gaps = 32/345 (9%) Query: 32 LVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQT--KSRIRVDSFPAASELINQLMT 89 + YR RA ++ + ++ +Q+ + + + P + L+ Sbjct: 126 PDASLIAGTPYAYRRRARLALYFQAKEQRLLMGYRQSNSHDLVDIKACPVLRPELEALLQ 185 Query: 90 AMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLN 149 + + ++ +L ++ + + +V + LD + +ALRD Q ++ Sbjct: 186 PLRDCLSRLKAVK-RLGHVELVQAENGPLLVL----RHLDPLHPADEQALRDFAEQQGVS 240 Query: 150 VHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKG 209 V+L A + + VAG + + F Q N A+N QM+ AL Sbjct: 241 VYLAPDADSLTCLHGDEPV---YLVAGLTLAF--SPRDFIQVNDAVNQQMVAQALAWLDV 295 Query: 210 SKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE 268 D +L+L+CG GNF+L LA+ V+ E V + N N + NV E Sbjct: 296 QPQDRILDLFCGMGNFTLPLAQRAASVVGVEGVTALVEKGRENARRNALSNVTFFHQNLE 355 Query: 269 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP-RILYISCNPE 327 + V + + I +DP R+G E++ + P R++Y+SCN Sbjct: 356 DDVTQQPWV------------AQGFDKILLDPARAGAAGVMEQITRLAPKRVVYVSCNAT 403 Query: 328 TLCKNLE-TLSQTHKVERLALFDQFPYTHHMECGVLL-----TAK 366 TL ++ + L+ + +A+ D FP+T H+E L T K Sbjct: 404 TLARDSKVLLAAGFTLVNVAMLDMFPHTGHLESMALFLHDTGTRK 448 >UniRef50_B7CCQ1 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCQ1_9FIRM Length = 406 Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats. Identities = 82/380 (21%), Positives = 151/380 (39%), Gaps = 48/380 (12%) Query: 14 QLAEKVVRLQSMMAPFSDLVPEV----FRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTK 69 Q +K ++ ++ + L V +HYR + D +Y ++ + Sbjct: 22 QADKKKKDVEVLVEK-AHLKVRVGDVHMAKNDTHYRNKVIVGFAKDKGKVYSGLYASHSH 80 Query: 70 SRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDYLTTLSNQA 118 ++ ++ +L+N+++ + V +LRH L + + T ++ Sbjct: 81 RVVKTENCIMQPKLVNEIINKITELVGSMKLELYNERTGTGLLRHVLIRWGHKT---DEV 137 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKE 178 +V + +K+ + L V I KT I L DE + + G Sbjct: 138 MVVFVTSQKMFPSRKNMVRVLTSEFPQIKTIVQNIN-PRKTSIVLQ----DEAIVLYGNG 192 Query: 179 MIYR--------QVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALA 229 MI+ NSF Q ++ + A + + D +L+ YCG G L + Sbjct: 193 MIHDELCGLDIAFSHNSFYQIHSEQCEVLYGLAKKMLDLKETDTVLDTYCGVGTIGLTMT 252 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 + +V+ E+ ++ A+YN N I N++ + M + EF + Sbjct: 253 DSCKKVMGVEVNPDAIENAKYNAKQNKIKNIEFVAMDSTEFMRQARKYHN---------- 302 Query: 290 SYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETL-SQTHKVERLA 346 + + I +DPPR+G + + A +ILYISC+P T ++L Q + +L Sbjct: 303 --RYDAIILDPPRAGTTKDFIECATALNPRKILYISCDPRTQVRDLNQFRKQGYVTNKLE 360 Query: 347 LFDQFPYTHHMECGVLLTAK 366 L D FPYT H+E +L K Sbjct: 361 LVDLFPYTDHIESVCVLEKK 380 >UniRef50_C1E1T7 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E1T7_9CHLO Length = 1143 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 116/496 (23%), Positives = 203/496 (40%), Gaps = 134/496 (27%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFS-----------------DLVPEVFRSPVSHYRM 46 + + Y A L KV L+ + +P + PEVF SP ++R Sbjct: 648 DPVDASTYSAALDAKVAELERLFSPLMQQASIPILNAKGVDRSVSVRPEVFPSPPLNFRS 707 Query: 47 RAEFRIWHD-------------------GDDLYHIIFDQQTKSRIRVDSFPAASELINQL 87 R F++ + G L + +++ + K + + FP A I +L Sbjct: 708 RCRFQVMWEDAPVTAESTGITPGESVEPGRRLSYRMWN-KGKPTVPITEFPMALREIEEL 766 Query: 88 MTAMIAGVRNNPVLRHKLFQIDYLTTL--SNQAVVSLLYHKKLDDEWRQEAEALRDALRA 145 M A++ +P L L I +L + +V+++Y + +D+ W+ AE R L+A Sbjct: 767 MPAVLREAEAHPELGDGLQAIHFLASRGIRGGMLVTMVYGRPIDEAWKMAAEGPRARLKA 826 Query: 146 QNLNV-------------------------------HLIGRATKTKIELDQD-YIDERLP 173 +++ +++GR+ T+I + ++ E L Sbjct: 827 AMVDIRERVYGGGDDDGFDGFAGPRGDDEELDATALNILGRSRGTQIVVGDACHVFETLA 886 Query: 174 V-AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS----------------KGDLLE 216 + G+ + YRQ E +F+ PN+ M L+W D + LLE Sbjct: 887 LRDGRRLRYRQAEGAFSNPNSFMAESTLDWLCDCAATTVREALGGTSEHSAEAAPPSLLE 946 Query: 217 LYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG 276 LY GNGN ++ALA+ FD V A E++ AA+ N+ N ++N +++ +E + M Sbjct: 947 LYSGNGNHTVALAKYFDSVAAVELSGVLCEAARENLERNGVENAKVLHSPSESVARGMLR 1006 Query: 277 VREFNRL------------------------QGIDLKSYQCETIFVDPPRSGLDSETEKM 312 ++ + G++ + + VDPPR+GLD +T + Sbjct: 1007 RKKRHEEGRVGKAAMAAAATGAGDGSKRGDGSGMEFDINAYDVVLVDPPRAGLDPDTLDL 1066 Query: 313 VQAYPRILYISCNPE----------TLCKNLET------------LSQTHKVERLALFDQ 350 V + +LYISC+P + L+T L++TH + R A+FD Sbjct: 1067 VSRFDVVLYISCDPRKGLLENAVGPHAARALDTGEFEGEFKGWSGLARTHDLVRFAVFDH 1126 Query: 351 FPYTHHMECGVLLTAK 366 FPYT H+ECG + Sbjct: 1127 FPYTRHIECGACFVRR 1142 >UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE25_KOSOT Length = 440 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 84/381 (22%), Positives = 151/381 (39%), Gaps = 48/381 (12%) Query: 10 QYEAQLAEKVVRLQSMMAPFSD----LVPEVFRSPVS-HYRMRAEFRIWHDGDDLYHIIF 64 QY QL K +Q E+ S + HYR R E+ + G + ++ Sbjct: 82 QYSNQLLWKKRIVQEQFRRVGKFYELPDFEMIPSKKTNHYRNRMEYVAYQKGKKIGFGMY 141 Query: 65 DQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-----------LRHKLFQIDYLTT 113 + + + V+ E ++ + V L+H + + Sbjct: 142 KRFSNEVVDVEDCDLGYEGFGKVRRTFEEILSRFGVKPYNRESKRGFLKHLVLR----GN 197 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKT------KIELDQDY 167 + V L+ ++ E + + +++ L VH+ ++ + Sbjct: 198 RNGDIVALLITKRESFPEIDKISREVKEQLPEVTSLVHVFNSRDDVVLRGPYRVIYGEGI 257 Query: 168 IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSL 226 I E L + +++ SF Q N + ++L++ S + L+LY G G F+ Sbjct: 258 ITETL----GDAVFQVPPVSFFQANVFVMEELLKYVQQELNPSPSETFLDLYSGIGTFAF 313 Query: 227 ALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286 AR F +V+A E K S A N N I N++ + M +F + Sbjct: 314 YFARMFKKVVAVEGIKISSRAMLSNARINMISNLEAVNMDTRDFLEK------------- 360 Query: 287 DLKSYQCETIFVDPPRSGLDSETEKMVQAYP-RILYISCNPETLCKNLETLS-QTHKVER 344 + + + +DPPR+G+ + E + +A P RI+YISCNP TL ++ LS + ++ Sbjct: 361 --NEEKFDKVILDPPRAGIGKDIELIGKALPKRIVYISCNPTTLARDSRYLSNKGFSLKA 418 Query: 345 LALFDQFPYTHHMECGVLLTA 365 L FD FP THH+E + Sbjct: 419 LRAFDMFPDTHHVEVVAIFNR 439 >UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DVS0_EIKCO Length = 430 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 74/370 (20%), Positives = 137/370 (37%), Gaps = 31/370 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGDDLYH 61 L Q+A K L+ + + P+ P+ YR RA H Sbjct: 77 LQHVHSNVQVAYKQRILEDQLQRLGKVRPQYLLPPIYGQAWGYRYRARLSAHHSQGRTTL 136 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVS 121 + + + + P + + ++ A ++ L + I+ + + ++ Sbjct: 137 GFQSRSSHRIVDIRQCPILAPQLANQLSNTRALLQQLNRLHTPVRTIELHHSPAANSLT- 195 Query: 122 LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR---ATKTKIELDQDYIDERLPVAGKE 178 L+ + L + L ++ N H+ + + D + LP Sbjct: 196 -LHTEHLP---KAARAHLIQHAQSLPANWHIWLQTPHRPAQPLLPDSPQLSYSLPEYALT 251 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLA 237 + YR FTQ N NI ++ A+ + + G+ + +L+CG GNFSL +A +V+ Sbjct: 252 LPYR--PGDFTQVNPTANILLVARAIQLLQPQPGERIADLFCGLGNFSLPIAAAGAQVIG 309 Query: 238 TEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 E + A N NH+ + Q F + + I Sbjct: 310 IEGSPELTERASQNARLNHLAERAQFHSADL------------FQTTEHTVAGWGYFDKI 357 Query: 297 FVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPY 353 +DPPRSG + + + Y RI+Y+SCNP T ++ L S+ ++ + + FP Sbjct: 358 LLDPPRSGAYALVQALHAPYLPRRIVYVSCNPATFARDAAVLVSKGYRFRNAGIVNMFPQ 417 Query: 354 THHMECGVLL 363 T H+E Sbjct: 418 TAHVETVGCF 427 >UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Rickettsiella grylli RepID=A8PP31_9COXI Length = 443 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 158/374 (42%), Gaps = 32/374 (8%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGDDLY 60 +L ++AQL K L + + + P +PV YR RA + + Sbjct: 87 NLQHLNHQAQLQHKEKILVNQLTHVAKTKPTSLLAPVMATGWGYRRRARLGVKYVAKKQA 146 Query: 61 H-IIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + F ++ ++ + +++L+ + +++ H + QI+ Sbjct: 147 VLVGFREKNGHYLAQIQTCKTLDFRVDRLLIPLQQLIQSLNAF-HDIPQIEVALGDE--- 202 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLI-GRATKTKIELDQDY--IDERL-PV 174 + L + L + AL++ + ++ ++L G T ++ + RL Sbjct: 203 -ILGLVFRHLVPLNNSDVLALKNFAKKYSVQLYLQPGNEKTTHCIWPENPQLLSYRLQNK 261 Query: 175 AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFD 233 A + + + + F Q NA +N M++ A+++ D +L+L+CG GNFSL LA Sbjct: 262 AHRSLEFFFEPHHFIQINATINQAMIQHAIELLSPHFSDRILDLFCGLGNFSLPLALRCQ 321 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMA-AEEFTQAMNGVREFNRLQGIDLKSYQ 292 V+ E V A+ N N I+N Q + + + FN+ Sbjct: 322 SVVGIEGHSALVEQAKINARHNAINNTQFYTADLTGSILKEVWAQQTFNK---------- 371 Query: 293 CETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQ 350 I +DPPRSG +++ + +++YISCNP TL ++ E L Q + +ER + D Sbjct: 372 ---ILLDPPRSGALEVIQQIARWKVEKMVYISCNPATLARDSEELIKQGYHLERAGIMDM 428 Query: 351 FPYTHHMECGVLLT 364 FP THH E L T Sbjct: 429 FPQTHHSEAICLFT 442 >UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase protein n=1 Tax=Xanthomonas albilineans RepID=D2U9R4_XANAL Length = 467 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 155/374 (41%), Gaps = 34/374 (9%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH-DGDD 58 +HL +Q Q+ K L + + P+V + YR + F + + D Sbjct: 116 QHLAEDQ---QILAKQQVLTDNLERIGHVTPQVVLPALSGASWGYRRKGRFSVRRVEKKD 172 Query: 59 LYHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + F +Q + + + + A+ V R + QI+++ + Sbjct: 173 KTLVGFREQDPRFVADLSVCHTVIPQVGLKVAALAELVERLDAKRD-IPQIEFIAGDATV 231 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLI--GRATKTKIELDQDYIDERLPVA 175 A+ + + + L + + +AL +A + + L G + + + RLP Sbjct: 232 AL-TFRHMQPLSE---HDQDALIAFAQAHDFAIFLQPAGVDSVHPLYPQAAPLSFRLPQW 287 Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDR 234 E+ +R F Q NA +N QM+ AL + GD +L+L+CG GNF+L LAR Sbjct: 288 DVELAFR--PLDFIQVNAVLNQQMIAHALALLDAQSGDRVLDLFCGLGNFTLPLARTVRE 345 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 V+ E V A+ N N +DN Q A + TQ + Sbjct: 346 VVGVEGDAGLVTRARENAQRNGLDNAQFF---AADLTQDQRQAPWMR---------QGFD 393 Query: 295 TIFVDPPRSGLDSETEKM-VQAYPRILYISCNPETLCKNLETL--SQTHKVERLALFDQF 351 + +DPPRSG +++ ++ + RI+Y+SC+P +L ++ L +Q ++ D F Sbjct: 394 KLLLDPPRSGALEVLQQLPLKQFQRIVYVSCHPGSLARDASYLVNTQGFVLKAAGAMDMF 453 Query: 352 PYTHHMECGVLLTA 365 P+T H+E + Sbjct: 454 PHTAHVESIAVFER 467 >UniRef50_A5CXB2 RNA methyltransferase, TrmA family n=2 Tax=Gammaproteobacteria RepID=A5CXB2_VESOH Length = 439 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 82/364 (22%), Positives = 153/364 (42%), Gaps = 26/364 (7%) Query: 12 EAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHD-GDDLYHIIFDQ 66 E Q+ K L+ + A + + PE + + YR +A I + D I F + Sbjct: 93 EDQIQIKSRWLKKVFARQAKVEPETWLKSLQFQSWGYRRKARLGIRYVAKKDKVLIGFRE 152 Query: 67 QTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 + S I + I + + + + + + + Q + + + S A++ Sbjct: 153 RKSSFITNMSRCEVLHPSIGEHLEVLANCIERLSI-KSSIPQFEVVISESGIALIL---- 207 Query: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 + L+ ++ + L D + N+ + + LD+ I + +I + Sbjct: 208 RHLESLSVKDEKILADCAQELNITFYTQSGGLDSVKPLDEPTI-LTYSHSNYNIIMEFLP 266 Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPS 244 F Q N +N QM+ A+++ + ++ D +++L+CG GNF+L +AR V+ E Sbjct: 267 TDFVQVNFKLNQQMVSLAVELLELNESDKVIDLFCGLGNFTLPIARYAKYVVGIEGDLGL 326 Query: 245 VAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG 304 V A+YN N I+NV R + + + G F K +DP RSG Sbjct: 327 VERAKYNAEKNSINNVDFYRS---DLCKEVVGFEWF--------KGKTYNKALIDPSRSG 375 Query: 305 LDSETEKMVQ-AYPRILYISCNPETLCKN-LETLSQTHKVERLALFDQFPYTHHMECGVL 362 E + + R++Y+SCNP TL ++ L+ + +E + D FP T H+E L Sbjct: 376 AIEIVELLPKLGVTRLVYVSCNPATLARDTLKLIKLGFTLETAGVIDMFPQTSHVESIAL 435 Query: 363 LTAK 366 + Sbjct: 436 FVKR 439 >UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) n=3 Tax=Acinetobacter RepID=C0VPT5_9GAMM Length = 463 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 82/374 (21%), Positives = 153/374 (40%), Gaps = 31/374 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSH----YRMRAEFRIWH--DGDDL 59 L + Q+ K LQS + F+ L PE + +P+ YR RA + + D L Sbjct: 101 LQHIHPDEQILLKQNVLQSHLQHFAGLQPEQWLTPIRSSKIDYRRRARIGVRYIPRQDRL 160 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + + + + ++ + + + H I ++ Sbjct: 161 VMGFREHHSNHLTTIHQCKVLDQTLSDAIPELRKCLEGLMAKAH----IGHVELAMGDHE 216 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLP--VAGK 177 V+LL + L++ + LR + ++L R + +D RL + Sbjct: 217 VALLI-RHLEELNVSDVNHLRQFALQRQWQLYLQPRGADSLHRVDDVQAPMRLHYHLDDF 275 Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFD--- 233 ++ + FTQ N+A+N +M++ A ++ + +G+ +L+L+CG GNFSL LAR Sbjct: 276 DIRFAFSPLDFTQVNSAVNARMIQLACELLQLKEGERVLDLFCGLGNFSLPLARCVGDTG 335 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 +V+ E + V A N AN ++ + Sbjct: 336 QVIGVEASDEMVLRATENAKANSLNQAIFFSQDLTK------------DFSHHPWAKQGF 383 Query: 294 ETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQF 351 + + +DPPRSG + + RI+Y+SCNP TL ++ L+Q +++++ A+ D F Sbjct: 384 DALLIDPPRSGAFEVMQYVPSFGANRIVYVSCNPSTLARDAGVLAQHGYQLKKAAVMDMF 443 Query: 352 PYTHHMECGVLLTA 365 +T H+E L Sbjct: 444 THTEHVESIALFEK 457 >UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzyme n=4 Tax=Leuconostocaceae RepID=Q03Z05_LEUMM Length = 463 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 72/384 (18%), Positives = 147/384 (38%), Gaps = 39/384 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPF---SDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 L +YEAQL K +++ + + + ++YR + + D L Sbjct: 95 PLVNLKYEAQLELKQAQVKRLFEEQHIDVSVDRTIGMDNPTYYRNKTIVPVKWQNDHLTS 154 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQIDY 110 + + T + +D + I+Q + + + +R+ + + Y Sbjct: 155 GFYKRGTHDLVPMDDYFVNDAEIDQAIIVVRNILEKYDITAFDPDLERGAIRYIMIRRGY 214 Query: 111 LTTLSNQAVV----SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD 166 + +V + + ++ + R + L+ + + + + +I + Sbjct: 215 YSHELMVVLVSNEEVISHETEIIADIRNQLTELKSLILNYSPKKDYVLLSPNNRILWGEK 274 Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFS 225 I + L + NSF Q N + + A D +++ Y G G Sbjct: 275 AIYDTL----LGYEFIIGPNSFYQVNPQTTEVLYDLAAQKADLKPTDTVIDAYSGIGTIG 330 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 +++A +VL E+ +VA AQ N+ N+I N + I A + + Sbjct: 331 ISVASRVKKVLGVEVVPGAVADAQLNLQVNNISNAEYILADA------------PVQFKK 378 Query: 286 IDLKSYQCETIFVDPPRSGLDSETE--KMVQAYPRILYISCNPETLCKN-LETLSQTHKV 342 + + + +FVDPPR GL + + +I+YISCNP TL ++ +E + + + Sbjct: 379 WQEQGLKPDVVFVDPPRRGLTTSLINGTTDMSPEKIVYISCNPVTLSRDAVEIIENGYHI 438 Query: 343 E-RLALFDQFPYTHHMECGVLLTA 365 + + DQFP T H+E + Sbjct: 439 DGSVLPVDQFPQTSHVESITVFRK 462 >UniRef50_Q65W13 23S rRNA (uracil-5-)-methyltransferase rumA n=36 Tax=Bacteria RepID=RUMA_MANSM Length = 440 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 151/371 (40%), Gaps = 35/371 (9%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFR---SPVSHYRMRAEFRIWHDGD-DL 59 +H+P E Q K L + E YR R + DG Sbjct: 94 QHIPVEM---QREAKQKALFRRLLKLQPEGIEFMPMIVGEAFGYRRRVRLSMLFDGKLKR 150 Query: 60 YHIIFDQQTK-SRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 I F Q+ + ++ +N++++ + A + ++ L I+ + + A Sbjct: 151 LEIGFRQKNSAQIVHIEQCEVIEPALNKILSKLTALLSRFSQPKN-LGHIELVAADNGVA 209 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKE 178 ++ L Y KL + + L D + L + L KT+ Q + Sbjct: 210 ML-LRYSGKLTEN---DRTLLLDFAVREELMLFLQ-DDEKTEQIYGQPPFYQ----LADN 260 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLA 237 + + F Q N+ +N +M+ ALD K D +L+L+CG GNF+L L+R + Sbjct: 261 LQLQFDIRDFIQVNSLLNQRMITAALDWLDVQKQDHVLDLFCGMGNFTLPLSRRVKSAVG 320 Query: 238 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE-FTQAMNGVREFNRLQGIDLKSYQCETI 296 E V A+ N N NVQ R ++ F + FN+ I Sbjct: 321 IEGISAMVEKAKANAERNQCQNVQFYRADLDQNFADEVWATEPFNK-------------I 367 Query: 297 FVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQT-HKVERLALFDQFPYT 354 +DPPR+G + + +ILY+SCNP TL ++ E L + ++V+++A+ D FP+T Sbjct: 368 LLDPPRTGAAFALNALCRLKAEKILYVSCNPATLVRDAEILLNSDYRVKKVAMIDMFPHT 427 Query: 355 HHMECGVLLTA 365 H+E L Sbjct: 428 GHLESITLFEK 438 >UniRef50_C7MM03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MM03_CRYCD Length = 543 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 82/432 (18%), Positives = 152/432 (35%), Gaps = 94/432 (21%) Query: 9 EQYEAQLAEKVVRLQSMMAP----FSDLVPEVFRSPVSHYRMRAEF------------RI 52 E Y QL K + + A L P + +R + R+ Sbjct: 123 EPYAHQLKRKQYFIAELFADEIKAGCTLEPIIGMEDPFGFRNKIASPFAPVRSSRTGKRV 182 Query: 53 WHDGDD--------------------------------LYHIIFDQQTKSRIRVDSFPAA 80 H + + ++ T IR D P Sbjct: 183 RHTKSGDATLQQDTAARQRKTSVNSLSRSRSTSSAVSSMRYGLYAAGTHRLIRADKCPVE 242 Query: 81 SELINQLMTAMIAGVRNNPVL-----------RHKLFQIDYLTTLSNQAVVSLLYHKKLD 129 + +++ A +R + RH + ++ + S++ +V+L+ + K+ Sbjct: 243 HPIGRRVVAATAQLMRKWDIAPYDEDAGTGFMRHVIVRVGH---ESDEVLVTLVTNGKVF 299 Query: 130 DEWRQEAEALRDA-------LRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYR 182 + A L+ ++ N+ + ++ +I + L + +R Sbjct: 300 PSGKNFARHLKKHCPEITTVVQNVNMRSTNAIFGGEEQVLYGPGFILDTL----CGLSFR 355 Query: 183 QVENSFTQPNAAMNIQMLEWALDVTKGSKG----DLLELYCGNGNFSLALARNF--DRVL 236 +SF Q NA + AL++ + +L+ YCG G L A +V+ Sbjct: 356 ISSHSFYQVNAVQTEVLYRTALEMAACTSSHQALTILDAYCGTGTIGLVAASQVPNSQVI 415 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 + A S+ A+ N N I N + A +F +R D + + Sbjct: 416 GIDNASSSIRDARQNAVHNGIANATFLCEDATDFL--------LHRAAASD----SIDVL 463 Query: 297 FVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQT-HKVERLALFDQFPY 353 +DPPR+G SE + A R++YISCNP T +++ ++ + + RL D FP+ Sbjct: 464 MMDPPRAGSTSEFIEAACALAPERVVYISCNPATQKRDVRLFARGGYHLVRLRAVDMFPH 523 Query: 354 THHMECGVLLTA 365 T H+E LL Sbjct: 524 TDHIETVALLMR 535 >UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8REE9_9FIRM Length = 451 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 143/386 (37%), Gaps = 40/386 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS---DLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 L + Q K ++ + + + HYR + D Sbjct: 82 QLMHRKQSNQAQYKKEQVVELCKKQRLSIPVEDVLCAGNPYHYRNKMIIGFQKGRDKRIK 141 Query: 62 IIFDQQ-TKSRIRVDSFPAASE-----------LINQLMTAMIAGVRNNPVLRHKLFQID 109 F ++ + I ++ + LI +L + R +LRH L + Sbjct: 142 AGFYEEFSHRIIPYEACLLHPKECDDIVQSIVSLIQKLAIEIYDEDRRTGLLRHVLIRYG 201 Query: 110 YLTTLSNQAVVSLLY----HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ 165 +T V +KL +E + + ++ N I + +I + Sbjct: 202 KVTKQIMVVFVVSSNVFPARRKLVEELLKAHPNITTIVQNVNPRKTSIVLGNEERILYGK 261 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNF 224 YI++ L + ++ SF Q N + ALD + ++ L+ YCG G Sbjct: 262 GYIEDIL----CGLRFKISCKSFYQINHDQCEVLYTKALDKLMLTGNEVVLDAYCGIGTI 317 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 + +A +V+ E+ K +V A N N I N++ + A F + + Sbjct: 318 GMCVASKVKQVIGVELNKDAVKDAIQNAKLNRIRNIRFLCDDAGSFMSQLAKAQ------ 371 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ-THK 341 + + +DPPRSG E P+ILYISCNP T +++ L + ++ Sbjct: 372 ------QTLDVLIMDPPRSGSSQEFLSSAARLRVPKILYISCNPNTQIRDIRMLQKLGYR 425 Query: 342 VE-RLALFDQFPYTHHMECGVLLTAK 366 VE + L D FP+T+ +E +L K Sbjct: 426 VEGSMTLVDMFPFTNSIESVCMLVRK 451 >UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n=3 Tax=Desulfovibrio vulgaris RepID=Y924_DESVH Length = 468 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 147/386 (38%), Gaps = 36/386 (9%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDD 58 ++LP Y AQLA K ++ + +++P + +R + EF D + Sbjct: 86 QNLP---YPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGFRNKMEFAFTTDDRE 142 Query: 59 LYHII-FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-----LRHKLFQIDYLT 112 + H+ + + V S + +++T R + + H+ F +L Sbjct: 143 MLHLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGWDDAAHRGF-WRFLV 201 Query: 113 TLS----NQAVVSLLYHKKLDDEWRQEA--EALRDALRAQNLNVHLIGRATKTKIELDQD 166 Q +V + + E A ALR A+ VH I D Sbjct: 202 VREPARGGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVTGCVHSIRSQNSQVAYGDAT 261 Query: 167 YIDE---RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNG 222 E L + ++F Q N + + S + + +LYCG G Sbjct: 262 VFTEGEIVLTEKLGAIELDFGHDTFLQTNTRATELLYGEVERMAGLSGREHVWDLYCGVG 321 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 + +L LA + + E SV AAQ N A + + ++ + + Sbjct: 322 SIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVRALLRSRSKGK---- 377 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETE-KMVQAYP-RILYISCNPETLCKNLETLSQTH 340 + + + DPPR+G+ + ++Q P RI+Y+SC+P T+ +++ L Q + Sbjct: 378 -----AQEPIPDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDVGLLMQRY 432 Query: 341 KVERLALFDQFPYTHHMECGVLLTAK 366 + D FP+T H+E VLL+ K Sbjct: 433 TLHEARPVDLFPHTPHVETVVLLSNK 458 >UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU44_9GAMM Length = 440 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 151/371 (40%), Gaps = 28/371 (7%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS----HYRMRAEFRIWHDGDDL 59 +HL AQ+A K L+ + + P P+ HYR +A + Sbjct: 89 QHLEPG---AQIAVKQRHLEDQLQHIGRVRPARILPPIQGPSLHYRSKARLSVRVPKTRG 145 Query: 60 YHIIFDQQTKSRIR-VDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + F + S + ++S P + + + + A V + Q + T ++ Sbjct: 146 ALVGFREYHSSFVAAMESCPVLDPRVGERILDLRALVARLQRPA-AIPQWEIACTDAHAV 204 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDE-RLPVAGK 177 ++ + LD R + L+ A L + L G ++ L + + E + Sbjct: 205 LIL----RHLDALSRSDLRLLQGFADAHGLRILLQGGGPESLQALPGEDVPELEYALPEF 260 Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVL 236 ++ R F Q N +N ++ A+ + G+ +++L+CG GNF+L +AR R L Sbjct: 261 DLRLRFQPLGFIQVNPWINPVLVRRAMALLAPEPGEEIVDLFCGLGNFTLPMARLGARAL 320 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 E VA A++N N + A F A L G + + Sbjct: 321 GVEGDTRLVAQARFNAELNGL-------AARAHFIAADLTQTALADLPG----AAGVRKM 369 Query: 297 FVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETL--SQTHKVERLALFDQFPYT 354 +DPPRSG + + A R++Y+SCNP+TL ++ L Q ++E + + FP+T Sbjct: 370 LIDPPRSGAIEILKGIGPALRRLVYVSCNPDTLARDSAYLVQQQGFRLEAAGIVNMFPHT 429 Query: 355 HHMECGVLLTA 365 H+E L T Sbjct: 430 AHVESVALFTR 440 >UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19 Tax=Proteobacteria RepID=RUMA_PSYCK Length = 513 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 163/385 (42%), Gaps = 36/385 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHD-GDDL 59 +L Q +AQ+ K L M+ +++ P+ + PV YR +A + + + Sbjct: 138 NLQHWQPDAQITFKQSVLAEMLVHQANVAPDHWLEPVVGDRLGYRTKARLGVRYVVKKET 197 Query: 60 YHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVR----NNPVLRHKLFQIDYLTTL 114 + F +++ + + ++ I + + + + + + +L ++L L Sbjct: 198 ALVGFRERSSNFLAELNECHILDPRIGFEIENLKTLISTLDSRDKIAQLELAMGEHLPEL 257 Query: 115 SNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATK--TKIEL-DQDYIDER 171 + L + L+ + + L+ A+N ++L + +I L D D + E+ Sbjct: 258 PDGDQPVALIVRNLEPLSDGDIDKLKVFFAARNWQLYLQSKGADSIQRIALRDTDDLSEQ 317 Query: 172 L-----PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFS 225 + ++ + + FTQ N ++N QM + A D+ G+ +L+L+ G GNFS Sbjct: 318 FGRLYYQLPEYDLTFEFIPTDFTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGNFS 377 Query: 226 LALARNFDR---VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 L LAR V+ E ++ A A N N I+N + +++ T N Sbjct: 378 LPLARLVGETGSVVGVEGSEAMTARAADNARRNGINNTEFY---SQDLTHDCTDKPWAN- 433 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLE-TLSQTH 340 + + +DPPRSG + + + RI+Y+SCNP TL ++ + L Q + Sbjct: 434 --------QGFDALLIDPPRSGAWEIMQYLPKFNAERIVYVSCNPATLARDTKALLEQGY 485 Query: 341 KVERLALFDQFPYTHHMECGVLLTA 365 ++ + D F +T H+E Sbjct: 486 RLTHAGVMDMFCHTGHVESIARFEK 510 >UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzyme n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PNA0_MYCA5 Length = 449 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 79/375 (21%), Positives = 156/375 (41%), Gaps = 39/375 (10%) Query: 11 YEAQLAEKVVRLQSMMAP---FSDLVPEVFRSPVS-HYRMRAEFRIWHDGDDLYHIIFDQ 66 YE QLA K + + F ++ E+ SP+ +YR + + G + + Sbjct: 91 YEDQLAFKQKIVNDLFLRELNFRNVK-EITPSPLEINYRNKLRVHVECQGTTFKMGFYVK 149 Query: 67 QTKSRIRVDSFPAASELINQLMTAM------IAGVRNNPVLRHKLFQIDY-LTTLSNQAV 119 + + S+ A + I ++ + + +N + ++K+ I + + ++ Sbjct: 150 NSHILVEQTSYDLAYKEIGNILEEIDFLCKKEVLLEDNFIKKNKITSITVKYSEKTGESQ 209 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIE-----LDQDYIDERLPV 174 V K+ + L + N+ V ++ KTKI ++ I+ ++ Sbjct: 210 VIFESLKQ-APFPASFIKRLIEKFDNLNI-VQIVCNEEKTKILKLIVLAGKESIEYKI-- 265 Query: 175 AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFD 233 ++ + SF Q N +M + L + + +++ + G G + LA+ Sbjct: 266 --DKLKFNVSSQSFYQVNEKQTNKMYKTLLKSLNLTGSEFIVDAFAGVGTIGMYLAKKAK 323 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 +V+ EI+K + + N N ++N++ I F + Sbjct: 324 QVVCVEISKKATLNGKENAKLNSLNNLEFISEDCNRF------------FDKECTRRQNI 371 Query: 294 ETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQ 350 + I DPPR GL+ T + ++ RI YISCNP TL ++L+ S+ +K+E + FD Sbjct: 372 DVIVFDPPREGLNKTTINAIIPKSLKRIAYISCNPRTLVRDLKLFTSKGYKIEFVQPFDM 431 Query: 351 FPYTHHMECGVLLTA 365 FP T+H+E LL+ Sbjct: 432 FPQTYHVETLALLSK 446 >UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Entamoeba RepID=B0ESQ3_ENTDI Length = 479 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 81/392 (20%), Positives = 149/392 (38%), Gaps = 65/392 (16%) Query: 11 YEAQLAEKVVRLQSMMAP------FSDLVPEVFRSPVS-HYRMRAEFRIWHDG------D 57 Y+ QL K ++ +M+ F + SP++ YR R ++ DG + Sbjct: 111 YQQQLEMKKKQVLNMINKEIKEYQFDGIK----ASPINIGYRNRMDYTFG-DGYIGGPLE 165 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAG-----------VRNNPVLRHKLF 106 H ++ + + N+L+ +++ LR+ L Sbjct: 166 CGLHKMY--HFNDVVTTFDCRIVDKDFNKLLLFTRDYFRIKNIPHYNKIKHTGYLRNLLI 223 Query: 107 QIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNL---------NVHLIGRAT 157 + +N+ + L+ +L + + L + NL ++ I Sbjct: 224 R---KAKKTNEIMYCLITSSQLTIDLNELKNKLLELPLMGNLVSIIHCIFDDITDIVGYN 280 Query: 158 KTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-E 216 K +I DYI E L + ++ SF Q N+ + + + +K D++ + Sbjct: 281 KMEILYGNDYITEEL----LGLHFKITPMSFFQTNSLGAEVLYQTVREYITTTKCDIIFD 336 Query: 217 LYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG 276 LYCG G + L+ +++ E+ ++ AA+ N N + N + + Sbjct: 337 LYCGTGTITQLLSPICKKIIGVELNPDAIHAAKLNAELNKLTNCEFRTADVNNELDQLQE 396 Query: 277 VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLE 334 R E I +DPPR+G+ + Y I+Y+SC P TL ++L Sbjct: 397 NR--------------PELIVLDPPRTGIHPTALSKIIKYGAQTIIYVSCMPTTLVRDLI 442 Query: 335 TLSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 L Q +KV+ + L D FP T H+E LL Sbjct: 443 ILEQNGYKVKNITLVDMFPNTPHIETVCLLKK 474 >UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RBR4_9CHLA Length = 484 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 85/399 (21%), Positives = 148/399 (37%), Gaps = 57/399 (14%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLV----PEVFRSPVSHYRMRAEFRIWHDGDDLYHII--F 64 Y QL K +++++ + P + YR + EF D ++ Sbjct: 96 YAEQLRLKEEKIRALFSAILTPDVQFFPIIPCDDPWQYRNKMEFSFSTDLSQNKYLGLIM 155 Query: 65 DQQTKSRIRVDSFPAASELINQLMTAMIAG-----------VRNNPVLRHKLFQIDYLTT 113 D + + + RN LR + T Sbjct: 156 DSSRGKVFNLTECHLTNSWFVDALKVTRNWWESSKLDAYHHYRNTGSLRTLTLREGQRT- 214 Query: 114 LSNQAVVSLLYHKKLD-----DEWRQEAEALRDALRAQN--------LNVHLIGRATKTK 160 +V L D ++ LR ++ L +H I + ++ Sbjct: 215 --GDRMVILTVSGNPDYALHKNDLDAFVAGLRASIELDRPECRLSIFLRIHQIAKGMASQ 272 Query: 161 ----IELDQDYIDERLPVAGKE------MIYRQVENSFTQPNAAMNIQMLEWALDVTK-G 209 + D I E+L + + + + ++F QPN ++ AL ++ Sbjct: 273 FYEMVLYGPDQIREKLYIQSQSEEQPVPLEFNISPSAFFQPNTRQAERLYSLALQLSSIS 332 Query: 210 SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 269 + + +LYCG G S+ L++ V+ EI +V A+ N A N NV + A E Sbjct: 333 TPITVYDLYCGTGTLSICLSKFAKTVVGVEICPEAVLDARSNAAKNGCSNVHFLCGAVHE 392 Query: 270 FTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDS-ETEKMVQAYP-RILYISCNPE 327 + F + + VDPPR+GLD + +++ P +ILY+SCNP Sbjct: 393 QLTKIIEENLFPL----------PDLVVVDPPRAGLDPHALQHLIKLSPKKILYVSCNPL 442 Query: 328 TLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTA 365 T N+ L SQ +++E + DQFP+T H+E +LT Sbjct: 443 TQVDNISNLISQGYRLEAMQPVDQFPHTIHIENIAVLTK 481 >UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCG8_9FIRM Length = 542 Score = 243 bits (620), Expect = 8e-63, Method: Composition-based stats. Identities = 83/382 (21%), Positives = 148/382 (38%), Gaps = 39/382 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE-----VFRSPVSHYRMRAEFRIWHDGDDL 59 L +Y AQL K L+ + ++ + P + + YR + + + + + Sbjct: 75 PLMIAKYPAQLQYKRSLLKQSLIKYAQVDPRKVEKVIGSEEIFGYRNQCKLPVSLNKEGQ 134 Query: 60 YHIIFD-QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV---LRHKLFQIDYLT--T 113 F + + + ++ +I ++ + H I L Sbjct: 135 LCSGFYLPNSNIFTEMKKCIVHDRGVERIRHEVIEVLKRFGIQPYNHHTKSGIRSLVVRG 194 Query: 114 LSNQAVVSLLY-HKKLDDEWRQEAEALR------DALRAQNLNVHLIGRATKTKIELDQD 166 + +L+ H +L ++ +R ++ + G K + L Sbjct: 195 FDGKYQCTLVTGHDELSCSLIEDILHIRGMYSLWQSIHTVKNTAEVFG---KQMVHLGG- 250 Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSL 226 +++LP + SF Q N A + + + KG K ++E Y G G SL Sbjct: 251 --EKQLPFHFDGLDLEVSPRSFFQLNTAQAKVLYQTIASLVKGHKKRIVEAYSGIGAISL 308 Query: 227 ALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286 L D ++ E K +V A N NH ++V+ + A ++ +E Sbjct: 309 YLRDKADEIIGIETIKDAVVNANQNAKRNHCEHVRFLCDDAASKLTYLSKNKEI------ 362 Query: 287 DLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTHKVER 344 + + VDPPRSGLD + + I+Y+SCNP TL KNL L + ++V+R Sbjct: 363 -------DVLVVDPPRSGLDDAMLECLLRSKIKEIIYVSCNPATLGKNLAVLQEKYRVQR 415 Query: 345 LALFDQFPYTHHMECGVLLTAK 366 + D FP T H+E VLL+ K Sbjct: 416 VIPIDMFPNTQHVETVVLLSHK 437 >UniRef50_D1CDT6 RNA methyltransferase, TrmA family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDT6_THET1 Length = 405 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 150/371 (40%), Gaps = 76/371 (20%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 H +Y+ QL K ++S+++ ++P + +YR A F GD Sbjct: 98 HYQHIRYDRQLEIKRHIVESLLSRIGGFRDIKVLPTIPSPREYYYRNSARFLCGQQGD-- 155 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 D ++ S I+VD+ P E IN+++ + H L + S Q Sbjct: 156 -LGFTDWRSNSFIKVDTCPIMDEKINEVLQHIQG---------HGLPGENVRVRYSRQKD 205 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLI-GRATKTKIELDQDYIDERLPVAGKE 178 +++ K L+V L G+ T++ L ++ Sbjct: 206 ELVIWPK---------------------LSVDLETGQQFHTQVLLGRE------------ 232 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLA 237 +R SF Q N ++ ALD + +G +++ YCG G F+ +A + + Sbjct: 233 --FRVSATSFFQVNTLQAENLIRIALDELEPLEGKTVVDAYCGVGTFTRFIAERAELTIG 290 Query: 238 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 E + + A +YN+ ++I AE +E RL + + Sbjct: 291 IEESPSATADFRYNMQGLK---AKLIEGRAE---------KELGRL------PNNIDRLL 332 Query: 298 VDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLS--QTHKVERLALFDQFPY 353 +DPPR+G + E + + A +I+Y+SC+P TL ++L+ L ++++++ D FP Sbjct: 333 LDPPRTGCEPEALETILELAPEKIVYVSCDPATLARDLKVLCSTGAYRLKKVQPVDMFPQ 392 Query: 354 THHMECGVLLT 364 T H+E L Sbjct: 393 TFHIETIASLE 403 >UniRef50_B4RXM8 RNA methyltransferase, TrmA family protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RXM8_ALTMD Length = 482 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 83/370 (22%), Positives = 155/370 (41%), Gaps = 28/370 (7%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGDDLY 60 L +A LA + L+ MM + V+++P+ YR +A I D Sbjct: 131 QLQHIDADAALAYRDNALKIMMERQLSIGSGVWQAPLVGPRPQYRRKARLAIDARNPDNI 190 Query: 61 HIIFDQQTKS-RIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + F + + + +D+ P ++ + + + RH + I + N+A Sbjct: 191 KLGFREANSNKVVNLDTCPILVNPLSTAIGPLRNALEGYDSARH-IGHISLIAG-DNRAQ 248 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 V + + K L+D + +A AL L+V L + + + + + V G + Sbjct: 249 VVIKHTKALEDALIETVDAFAKAL---GLDVVLENKQGRLRSVGEAQGLIMH-TVDGCSI 304 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLAT 238 N F Q N +N +M+ AL + + + + G GNF+L +A+ V A Sbjct: 305 S--PSANDFIQINKVVNEKMINQALVWLDPRPNERIADWFSGLGNFTLPIAKKGALVQAI 362 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E V A+ N I+NV+ + + N+ + + + Sbjct: 363 EGVAEMVLRAKDNAQQQGIENVEWLHLDLA------------NKANVEASLQQGFDKVLL 410 Query: 299 DPPRSGLDSETEKMVQAYPR-ILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHH 356 DP R G + +V+A P+ I+Y+SCNP T ++ + L + +++E+ + + FP+THH Sbjct: 411 DPSREGALTVCHALVKALPKTIVYVSCNPSTFSRDAKVLINGGYEMEKAGVAEMFPFTHH 470 Query: 357 MECGVLLTAK 366 ME L T + Sbjct: 471 MEMMALFTQR 480 >UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNG0_9FIRM Length = 436 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 81/380 (21%), Positives = 150/380 (39%), Gaps = 39/380 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFR-----SPVSHYRMRAEFRIWHDGDDL 59 +YE QL K+ L + ++ + R YR + + I L Sbjct: 74 PFFGIEYEKQLTFKLDLLTEALWKYAKVKRHWVRKINPSENEFSYRNQCKLPIQERQGKL 133 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV----------LRHKLFQID 109 +F + V F + ++ ++A + + LR+ + + Sbjct: 134 VCGLFSPNSNQFQVVHHFLTHDPEVERIRKELLAILNQHHFPAYSHKTKQGLRYIVIRCI 193 Query: 110 YLTTLSNQAVVSLLYHKKLDDEWRQE--AEALRDALRAQNLNVHLIGRATKTKIELDQDY 167 + + + +K L D++++ +L + ++ G +TK+ + + Sbjct: 194 HGISQATLITGKDTLNKCLIDDFKKIPHLHSLHQSWNTSKQSLQFFG--ERTKLLFGKKH 251 Query: 168 IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLA 227 L + + +F Q N + +A+ L+E YCG G SL Sbjct: 252 ----LLIPFSSIYLHVSPEAFFQLNTKQAEALYHYAVSKVDPC-HILVEAYCGIGVMSLL 306 Query: 228 LARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 287 + ++V E+ ++ A+ N NH+DN A + + Sbjct: 307 ASSKAEQVYGIELNPHAIQDAKRNAELNHLDNCHFECADAADGLYKIA------------ 354 Query: 288 LKSYQCETIFVDPPRSGLDSE-TEKMVQAYP-RILYISCNPETLCKNLETLSQTHKVERL 345 K + +T+ +DPPRSGLD E ++++ P RI+YISCNP TL KN+ L +++ + Sbjct: 355 -KKQKIDTLLIDPPRSGLDEAMLEAILKSQPDRIIYISCNPATLAKNIAVLKWKYQILTI 413 Query: 346 ALFDQFPYTHHMECGVLLTA 365 FD FP T H+EC LL+ Sbjct: 414 QAFDLFPQTPHVECLCLLSK 433 >UniRef50_Q29DJ3 GA17699 n=7 Tax=Drosophila RepID=Q29DJ3_DROPS Length = 631 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 86/425 (20%), Positives = 163/425 (38%), Gaps = 74/425 (17%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAP----FSDLVP------------EVFRSP-VSHYRMR 47 L Y+ QL +K + +++ + P EV SP V+ YR + Sbjct: 159 PLAGITYDDQLKQKSEEMSTLLKKYTQELRKINPQAKPHLDSFKFNEVLPSPTVNGYRNK 218 Query: 48 AEFRIWHDGDDLYHIIFDQQTKSRIRVD--------SFPAASELINQLMTAMIAGVRNNP 99 EF + + + + F + S V+ P ++ Q ++ + P Sbjct: 219 NEFTVGKNSEGEVVVGFRLGSYSDGSVEVAEVQDLPHLPDQAKWAAQSFQKLVRQSKFQP 278 Query: 100 V--------LRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEA------------- 138 R + + T +V+ +Y L ++ +QE + Sbjct: 279 FNPDGNVGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQQELKQELKSFYEHASEQD 336 Query: 139 ----LRDALRAQNLNVHLIGRATKTK-IELDQDYIDERLPVAGKEMIYRQVENSFTQPNA 193 +L Q++ G+ L +I + + + + +R +F Q N Sbjct: 337 DATFKCTSLYYQDVKHREAGQMVNPVDHILGTTHITDTI----QGLQFRISPLAFFQINT 392 Query: 194 AMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNI 252 + + A+D+ +K +L++ CG G +LA A++ RVL EI ++ AQ+N Sbjct: 393 EGANVLYQQAIDLVAPTKDTTMLDICCGTGTIALAFAKHCKRVLGVEIVPDAIKDAQFNA 452 Query: 253 AANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKM 312 AN I N + A++F ++M + + G + VDPPR+GL + + Sbjct: 453 EANGIKNCKFFTGNADDFIKSMVREAMYEQEPGKPVDL----IAVVDPPRAGLHNRSIAA 508 Query: 313 VQ---AYPRILYISCNPETLCKNLETLS---------QTHKVERLALFDQFPYTHHMECG 360 ++ A R++Y+SCNP + +N L+ + + D FP+T H E Sbjct: 509 IRSASAINRLVYVSCNPHSAKRNFIELARPESKHYKGEPFYPKSAVAVDMFPHTTHTELV 568 Query: 361 VLLTA 365 +L Sbjct: 569 ILFER 573 >UniRef50_B5JSQ3 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSQ3_9GAMM Length = 452 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 151/381 (39%), Gaps = 45/381 (11%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE------VFRSPVSHYRMRAEFRIWHDGD 57 +HL + AQ K L +A +++ P V YR RA W D Sbjct: 98 QHLSPQ---AQTEHKRQSLLDTLARQANIRPHRCLDSAVLNRDGLGYRSRARLACWFDSR 154 Query: 58 DL-YHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQID-YLTTL 114 YH+ F + I + P E IN+L+ + + L+ +L ID +L Sbjct: 155 RQQYHLGFRRAGSHTIEPISQCPILVEPINRLIPHLRDALPQWR-LKKRLGHIDAFLNES 213 Query: 115 SNQAVVSL---LYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDER 171 + V+L L LDD AQ N+ L R L D D Sbjct: 214 PSGPQVALCLRLNQAPLDDSKAVMLNF------AQQHNITLAWRDDHRVETLHGDS-DLT 266 Query: 172 LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALAR 230 + E+ F+Q N +N +M+ A++ G +L+ +CG GNFSLALA Sbjct: 267 YYLLDGELKLSLGWGEFSQANRGLNREMVRTAVEQLHVPPGAHVLDAFCGVGNFSLALAN 326 Query: 231 NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 290 +VL E + V A++N N + + + N + + Sbjct: 327 GGAKVLGLEGSDNMVEKARHNARDNGFELCEF---------------KTMNLMHSDGIGR 371 Query: 291 YQCETI---FVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETL-SQTHKVER 344 + + I +DPPR G +++ + R+LYISCNP T ++ E L + ++ Sbjct: 372 HTLDGIHHALLDPPRDGASELCQRLAREPELQRVLYISCNPATFSRDAEHLVNGGFTLDT 431 Query: 345 LALFDQFPYTHHMECGVLLTA 365 + L+D FP+THH E L Sbjct: 432 VQLWDLFPHTHHSEVMGLFVR 452 >UniRef50_Q72VP7 Uncharacterized RNA methyltransferase LIC_10249 n=4 Tax=Leptospira RepID=Y249_LEPIC Length = 393 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 83/391 (21%), Positives = 160/391 (40%), Gaps = 58/391 (14%) Query: 11 YEAQLAEKVVRLQSMMAPFSDLVP-EVFRSPVSH-YRMRAEFRIWHDGDD----LYHIIF 64 YE QL K ++ F L ++ +SP YR + + H L + Sbjct: 25 YEKQLQHKQEEIEKRFKGFKGLEIRQIIKSPKDQMYRHKVQLPFGHRKIGKKSVLTLGLH 84 Query: 65 DQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQIDYLTT 113 +++ I E + + A+ RN + +LRH + + Sbjct: 85 NKENTFIIDQKECRIQDEDLTTVAAAIRHWARNENLEPYHEKKGSGLLRHIVLR---KAN 141 Query: 114 LSNQAVVSLLYH-------KKLDDEWRQEAEAL--RDALRAQNLNVHLIGRATKTKIELD 164 + + +V ++ + KKL D + ++ +A + + TK+ L Sbjct: 142 ATQEILVGIVTNESEIPGRKKLTDRLYSYIQQFLYKENSKADVVGILQNVNRKNTKVVLG 201 Query: 165 QD--------YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLE 216 + ++ E++ ++ ++ ++F Q N + L+ +K +++ Sbjct: 202 EKEVTWYGRHFVKEKI----GKLDFQIGLSTFFQVNPFQIENLYNLILEDLPENK-CVVD 256 Query: 217 LYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG 276 YCG G SL +A +V+ E S+ +A AN I+NV I+ + +A Sbjct: 257 AYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKGKVLDTLRAAL- 315 Query: 277 VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLE 334 + + + +DPPR GLD+ET+ ++ +ILY+SCNPETL ++ Sbjct: 316 -------------NENSDVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLLRDAI 362 Query: 335 TLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 L+++ K E++ D FP+T H+E + T Sbjct: 363 ELTKSFKYEKITPVDLFPHTSHLESVSVFTK 393 >UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Coriobacteriaceae RepID=C8WGH7_EGGLE Length = 461 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 148/388 (38%), Gaps = 47/388 (12%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAP---FSDLVPEVFRSP------VSHYRMRAEFRIWH 54 +HL Y+AQL K + + + F E P YR + E Sbjct: 94 QHL---SYDAQLEAKRANVAAALERTAKFGRERAEELVRPCLPSKRQWGYRNKLELGAAM 150 Query: 55 DGDDLYHIIF-DQQTKSRIRVDSFPAASELINQLMTAMIAGVR-NNPVLRHKLFQIDYLT 112 D + + F + + P A + I + A+ +R +F++ Sbjct: 151 DERGTFQLGFHREGAHDIASPGACPLAHDAIAKAPKALRGALRFAQGSADLGIFRVGVRH 210 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDER- 171 +L + L+ A+ ++ A++A ++ V ++ K + + +D + Sbjct: 211 SLHTGDLEVALWTSPGSFPRGHIAKTVKSAVKATSI-VRVMADPGKARKIKGVETLDGKG 269 Query: 172 -LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD----------LLELYCG 220 + Y SF Q N A +++ ++ G G+ + +LY G Sbjct: 270 CWEEQLGDARYLASAPSFFQVNTAQAEKLIACVIEGLGGRMGEDGPEGLDDLLIADLYAG 329 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G FS+ LA+ VLA E A SV + N N +D +++I A + G+ Sbjct: 330 GGTFSVPLAQAGAEVLAVEAAGSSVRDLRRNADMNRVD-LEVIGGDAARELPELGGL--- 385 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETL-S 337 + + VDPPR+GL + A R+ Y+SCNP T +++ S Sbjct: 386 -------------DALVVDPPRAGLADGVVESIAAAAPERVAYVSCNPATWARDVARFES 432 Query: 338 QTHKVERLALFDQFPYTHHMECGVLLTA 365 Q +++ + D FP T+H+E + Sbjct: 433 QGYRLTSVQPVDMFPQTYHVEVVSVFER 460 >UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBR5_TOLAT Length = 440 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 71/371 (19%), Positives = 143/371 (38%), Gaps = 29/371 (7%) Query: 1 MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE-VFRSPVSHYRMRAEFRIWHDGDD- 58 M P+ + + + + RL +A P + S YR + +D + Sbjct: 94 MMPQAMQCQAKQQGV----QRLFRQLAKIDLPAPLWIESSAPQAYRRVCRLAVKYDKNKR 149 Query: 59 LYHIIFDQQTKS-RIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + F Q+ + ++S P + ++ L+ + + R + I+ T S Sbjct: 150 CVLVGFRQKQSQALVEINSCPVLTAALSALIVPLRTLINELSSARD-VGHIELYETESGL 208 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGK 177 A++ + ++ E L + ++L + + + G Sbjct: 209 AMLLRHNGRPP----VKDKELLLAFALQHDCALYLQTTGYPEPLADVKPSF---YQLDGL 261 Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVL 236 + ++ F Q N +N +++ + + + D +L+L+CG GNF+L LAR V Sbjct: 262 RLYFQ--PGDFLQVNPQVNQRLVNYVREWLAPTATDNVLDLFCGIGNFTLPLAREAASVT 319 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 E V A +N N + N R + + N + + + Sbjct: 320 GIEGVDEMVQRATHNAEQNQLVNTGFHRADLTKMAEYANA----------GWQQQCYDLV 369 Query: 297 FVDPPRSGLDSETEKMVQA-YPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTH 355 +DP R+G ++ + ++ RI+Y+SCNP T ++ L + +++ L D FP+T Sbjct: 370 LLDPGRTGAEAVMPWLAKSGARRIVYVSCNPVTAARDCALLQPGYTLKQWGLLDMFPHTG 429 Query: 356 HMECGVLLTAK 366 H+E L K Sbjct: 430 HVESLFLFERK 440 >UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E7H7_9ACTN Length = 442 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 86/375 (22%), Positives = 146/375 (38%), Gaps = 44/375 (11%) Query: 13 AQLAEKVVRLQSMMAPFSDLVPEVFRS---PV------SHYRMRAEFRIWHDGDDLYHII 63 AQLA K L+S + PE P+ YR + E + + Sbjct: 89 AQLAAKEQNLRSTLERIGKFAPEQVDELVQPICHTKDDWGYRNKIELEPTVVNGRVRLGM 148 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-NPVLRHKLFQIDYLTTLSNQAVVSL 122 + VDS P + + + +++ + + L ++ + +A+ Sbjct: 149 HGVDPSKIVAVDSCPLFDKRFPKALKSVVGALNYLSGSHNLGLERVGIRASRRTKALEVA 208 Query: 123 LYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKT-------KIELDQDYIDERLPVA 175 L+ Q + L DA ++ V ++ + K ++ + E + Sbjct: 209 LWTPTGSFPRSQVSRVLADAAHPTSI-VRVMSKGEKKARRVSKVEMLAGEGSWTENIA-- 265 Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDR 234 E R SF Q N ++E ++ + +L ++LYCG G F+L LAR D Sbjct: 266 --EGQMRLSAPSFFQVNTKGAEILIELVMEALDPQEDELAVDLYCGAGTFTLPLARRCDF 323 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 V A E P+V + N+ N +DNV +I A VREF + Sbjct: 324 VAAVEAYGPAVRDLRRNLEINKLDNVDVIGGDA---------VREF--------PDQDAD 366 Query: 295 TIFVDPPRSGLDSETEKMVQAYPR--ILYISCNPETLCKNLETLSQ--THKVERLALFDQ 350 + VDPPR+GL E ++ + + Y+SC+P TL ++L+ + T ++ D Sbjct: 367 VLVVDPPRAGLAPEAIDLIASTSAHDVAYVSCDPATLARDLKRFVEEGTFSPVKITPVDL 426 Query: 351 FPYTHHMECGVLLTA 365 FP T H E V L Sbjct: 427 FPQTFHCETVVHLKR 441 >UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=88 Tax=Lactobacillales RepID=Y1717_STRR6 Length = 451 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 72/387 (18%), Positives = 139/387 (35%), Gaps = 44/387 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-------LVPEVFRSPVSHYRMRAEFRIWHDGD 57 + Y+ QL K L + F+ + P + +YR + +F+ + Sbjct: 83 QIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKFKN 142 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASE---LINQLMTAMIAG-------VRNNPVLRHKLFQ 107 + ++ Q + + + + +I + ++ R +R + + Sbjct: 143 QVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIMVR 202 Query: 108 IDYLTTLSNQAVVSLLYHKKLD-----DEWRQEAEALRDALRAQNLNVHLIGRATKTKIE 162 + Q + ++ +++L+ E ++ + N KT+I Sbjct: 203 ---RARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEIYGEKTEII 259 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGN 221 Q+ I E + +F Q N + A+ K D L++ YCG Sbjct: 260 WGQESIQE----GVLNYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G A A+ + +I ++ A+ N DN AEE Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWYK----- 370 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQT 339 + Y+ + + VDPPR+GLD + + Y +++YISCN TL ++L L + Sbjct: 371 -------EGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 340 HKVERLALFDQFPYTHHMECGVLLTAK 366 + + + D FP+T E V L K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >UniRef50_Q1IVF7 (Uracil-5)-methyltransferase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IVF7_ACIBL Length = 441 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 94/383 (24%), Positives = 164/383 (42%), Gaps = 46/383 (12%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE----VFRSPVSHYRMRAEFRIWHDGDDL 59 +HL QY Q+ K L+ ++ + L E + YR R R+ H Sbjct: 84 QHL---QYAEQVKAKAQILEETLSRTAKLKLEQPIQTHAAEPLGYRNRTRMRVSH-VPQF 139 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + + S + V+ P +S LIN+++ + A R + R + ++ + + + Sbjct: 140 AIGYYRFGSHSLLPVEQCPISSPLINRVLQGLWAAGREERIARE-VREVQFFANHDDSRL 198 Query: 120 VSLLY--HKKLDDEWRQEAEALRDALR----AQNLNVHLIGRATKTKIELDQD------- 166 + LY H D + E LR + + + L + Sbjct: 199 LLELYIDHHAEPDALQPMIETLRGKMPEIAGVAVFRGAPADDSEDQRAPLTRAKASPGVF 258 Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFS 225 + + L K Y+ +F Q N + +M E T+G G L L+LY G G FS Sbjct: 259 FGERSLRYKTKRHEYQVSAGAFFQTNRFLLDEMAETV---TRGHSGKLALDLYSGGGFFS 315 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 L LA F++V+A E + S A + N + NV+ +R EEF + Sbjct: 316 LPLADQFEKVIAVEASGHSQADLKTNA----LRNVKAVRSGTEEFLRG------------ 359 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKV 342 + + + + + VDPPR+GL +T ++ + R+ Y+SC+P TL ++++ L + +V Sbjct: 360 -EGRQLRPDLVVVDPPRAGLGEKTSHLIGRMSVGRVTYVSCDPATLSRDMKVLVESGFRV 418 Query: 343 ERLALFDQFPYTHHMECGVLLTA 365 E + LFD FP T+H+E + L Sbjct: 419 EEVHLFDLFPQTYHLESVLHLVR 441 >UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n=1 Tax=Prochlorococcus marinus RepID=Y965_PROMA Length = 419 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 77/388 (19%), Positives = 142/388 (36%), Gaps = 60/388 (15%) Query: 12 EAQLAEKVVRLQSMMAPFSDL-----VPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQ 66 Q A K L + ++ L + S HYR ++ F ++++ I + Q Sbjct: 55 HYQFAIKKKLLINALSRIGKLNDFPEPISITPSQFFHYRNKSTFPVYNESYGNTIIGYYQ 114 Query: 67 Q-TKSRIRVDSFPAASELINQLMTAMI-----------AGVRNNPVLRHKLFQIDYLTTL 114 + + + +D+ P IN+ ++ + +R LRH + T Sbjct: 115 RNSHKIVDIDNCPVLDHKINKALSDIRLILKDNHINADHDIRRKGGLRHISIRSGINT-- 172 Query: 115 SNQAVVSLL-----------YHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL 163 N+ +++ + KL+ L + N + T+I Sbjct: 173 -NEVLITFVSNFSIKKLLFPITNKLNGSESNVVGILNNIQPKPNNKIF----GATTEILT 227 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG--DLLELYCGN 221 +DYI ++ M SF Q N + + ++ + +++ Y G Sbjct: 228 GRDYIYDKF----CHMDILIGSTSFFQVNLVEAEKAINCIRNIISNTNKIVRIIDAYSGI 283 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G S+ LA + RV+ EI + A N N+I + ++ + +F Sbjct: 284 GTMSIPLASDGYRVIGIEINNEAHEIAIRNAEINNIKTITFENQDVTKYLPKILLPNDF- 342 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMV-QAYP-RILYISCNPETLCKNLETL--S 337 + +DPPR GLD ++ + P I Y+SCNP TL ++L + Sbjct: 343 --------------LILDPPRKGLDPSLIDVITKLMPIHICYLSCNPATLARDLSLILRE 388 Query: 338 QTHKVERLALFDQFPYTHHMECGVLLTA 365 + + + FD FP T H+E V L Sbjct: 389 HKYSIISITAFDFFPQTTHLETLVYLKR 416 >UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinella chromatophora RepID=B1X3H7_PAUCH Length = 448 Score = 241 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 87/382 (22%), Positives = 151/382 (39%), Gaps = 42/382 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFR----SPVSHYRMRAEFRIWHDGDDLY- 60 L + +AQ+A K + + S + +V + YR +A + Sbjct: 84 LQSINEQAQVAWKQHYVSETLNRLSGIEVKVLPLLITNEPIKYRNKALIPLEQTSSGWLR 143 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR--NNPVLRHKLFQIDYLT----TL 114 + + + + +D+ P I+ L+ + A + + P+ H L I +L L Sbjct: 144 AGFYRRASHQIVNMDNCPLLDPRIDTLVEPIKADLETSHWPIDIHSLNGIRHLCLKVGIL 203 Query: 115 SNQAVVSLLYH-------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDY 167 +N+ +++L+ KL W Q + N+ + + TK + + Sbjct: 204 TNEIIITLVSSHDRMPGISKLAQHWMQRWPQVVGVCLNLQPNLDNVAIGSSTKTIAGRPW 263 Query: 168 IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSL 226 + ER + R ++F Q N + + + + S G +L+ Y G G SL Sbjct: 264 LIERF----CNLNLRIASDTFFQINTLQAERAVNFLASILNVSTGPKILDAYSGVGTLSL 319 Query: 227 ALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286 LA VL E+ SV A+ N N I + + + E + Sbjct: 320 PLAAAGANVLGLELRYSSVIHARLNAKLNSITSARFEHVDVAE---------------AL 364 Query: 287 DLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQTH--KV 342 L + + VDPPR GL+ E K + A P + +Y+SCNP TL ++L L+ KV Sbjct: 365 ALHLPSSDALIVDPPRKGLELEVIKQIIANPADQTVYLSCNPSTLARDLRLLTLAGNIKV 424 Query: 343 ERLALFDQFPYTHHMECGVLLT 364 + D FP T H+EC +L Sbjct: 425 TFIQPIDFFPKTTHVECLTILE 446 >UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BS02_9GAMM Length = 450 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 82/375 (21%), Positives = 143/375 (38%), Gaps = 34/375 (9%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH--DGD 57 +HL +Q QL K ++ + + P + +P+ YR +A + + D Sbjct: 90 QHLTPQQ---QLTFKETVVREKLRHMGGVEPSTWLAPLGSPAWGYRRKARLAVKYVAGKD 146 Query: 58 DLYHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSN 116 D + F + + + + S I + + +R + ++ QI+ Sbjct: 147 DRVLVGFRETHSTLVADLASCRVLDPRIGAHIPQLAETIRCLSIF-DRVPQIEVAAGDQA 205 Query: 117 QAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIG--RATKTKIELDQDYIDERLPV 174 +V + L ++ L R + V+ +A+ I + LP Sbjct: 206 VGLV----FRNLAPFTVEDYRLLSAFARQYDFYVYEQPGDKASVRPIWPRAPQLSYALPD 261 Query: 175 AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFD 233 + + FTQ N A+N ++E A+ + D +L+LYCG GNF+ +AR Sbjct: 262 HAVSVFFE--PTDFTQVNPAVNHALVERAIALLALQPQDRVLDLYCGLGNFAFCIARQVA 319 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 V+ E V A+ N A N I NV R + L+ Sbjct: 320 SVVGLEGDDALVERARENAARNAITNVVFQRADLSRGIAELA-----------HLQRDGV 368 Query: 294 ETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQ--THKVERLALFDQ 350 + +DPPRSG + RI+Y+SC P TL ++ L +++ + D Sbjct: 369 SRVLLDPPRSGAAEVLADIAALRAERIVYVSCGPSTLARDAGRLVHEYGYRLAAAGVMDM 428 Query: 351 FPYTHHMECGVLLTA 365 FP+T H+EC L Sbjct: 429 FPHTAHVECITLFVR 443 >UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3384C Length = 448 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 77/378 (20%), Positives = 152/378 (40%), Gaps = 54/378 (14%) Query: 4 EHLPTEQYEAQLAEKVVRL---QSMMAPFSDL--VPEVFRSPVSHYRMRAEFRIWHDGDD 58 +H+ E QL K ++ + F D+ +P + S + YR +A + + + Sbjct: 85 QHISPE---YQLYIKQNKIIQSLQRIGRFKDVFVLPILSSSQIFGYRNKATYPLGYSKFG 141 Query: 59 LYHIIFDQQ-TKSRIRVDSFPAASELINQLMTAMIAGVRNNP-----------VLRHKLF 106 + + Q+ + I ++ P +N + + + LRH Sbjct: 142 NVNAGYYQRYSHKLINLNQCPIQDSRLNSFLAEIKVDIEKQGWSIYNEKTYQGHLRHLAL 201 Query: 107 QIDYLTTLSNQAVVSLLYH-------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKT 159 +I S + +++L+ K+ W + L L +N + +T Sbjct: 202 RIG---QNSGEVLLTLISTTGNITKIKEQAKLWLERYPNLVGVLVNKNSEKNNKIFGNQT 258 Query: 160 KIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD-VTKGSKGDLLELY 218 + + ++ ER + ++ ++F Q NA +L LD + K +++ Y Sbjct: 259 FSIVGKPFLKERF----FNIDFKLRPDTFFQVNAQSAETLLHSLLDNLILTGKEKIVDAY 314 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 CG G F+L LA+ + EI+ S+ A+ N N+I+NV+ + A ++ +N Sbjct: 315 CGIGTFTLPLAKRISHAIGIEISHDSIEQAKANAELNNINNVEFYQGAVKDILPTLNIF- 373 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETL 336 + + +DPPR G D + ++ P I+YISC P TL ++L+ + Sbjct: 374 --------------PDIVLLDPPRKGCDDSVIETLREICPPLIIYISCQPSTLARDLKKI 419 Query: 337 S--QTHKVERLALFDQFP 352 +K+ + D FP Sbjct: 420 CYQNLYKILWVQPVDFFP 437 >UniRef50_Q6ANA2 Related to RNA-methyltransferase n=1 Tax=Desulfotalea psychrophila RepID=Q6ANA2_DESPS Length = 444 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 86/380 (22%), Positives = 155/380 (40%), Gaps = 36/380 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV----PEVFRSPVSH-----YRMRAEFRIWHD 55 +L E QL K ++ + + ++P++ YR R I Sbjct: 77 NLQHATAELQLEIKEAIVKESLTRSGKPELAKASALIQAPIASPQDFFYRQRIRLHIDEY 136 Query: 56 GDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLS 115 G Q+ I + AS IN+++TA+ + + Q++ + + Sbjct: 137 GR---MGFRQHQSHDIIAIKKCLLASPQINEVLTALEEHEEHGEIC-QLASQLELILNPA 192 Query: 116 NQAV-VSLLYHKKLDDEWRQEAEALRDALRAQN------LNVHLIGRATKTKIELDQDYI 168 + V + L +K A+ L + + + + N L KT E + Sbjct: 193 TEQVQLVYLLKRKSRPADTNRAKRLGEKIASVDCIYFIGENFPLQSAYCKTPEEGKVLSL 252 Query: 169 DER-LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSL 226 D + +AGK++ + N F Q N N+QM+E L + +L+L+CG GNFS+ Sbjct: 253 DYKPQALAGKKISMQWEVNGFCQVNIKQNVQMIETVLAFADIRDEESVLDLFCGMGNFSI 312 Query: 227 ALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286 LA V E ++ +A+ N N +DN + + + + Sbjct: 313 PLACQAKAVTGFEGQGSAIRSAKKNALNNGLDNCSFYQKPVHKACAELIADKRV------ 366 Query: 287 DLKSYQCETIFVDPPRSGLDSETEKMVQAY-PRILYISCNPETLCKNLETLS-QTHKVER 344 + + +DPPR G ++ + R++YISC+P TL ++L LS Q ++++ Sbjct: 367 ------YDCVIIDPPRQGAPELAGQLAKLCQKRLIYISCDPATLTRDLAELSKQGFQIKK 420 Query: 345 LALFDQFPYTHHMECGVLLT 364 + D FP T+H+E VLL Sbjct: 421 IQPIDMFPQTYHIENVVLLE 440 >UniRef50_B5RIS0 FI05218p (Fragment) n=8 Tax=melanogaster subgroup RepID=B5RIS0_DROME Length = 640 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 85/423 (20%), Positives = 161/423 (38%), Gaps = 72/423 (17%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAP----FSDLVP------------EVFRSP-VSHYRMR 47 L Y+ Q+ +K + +++A + P EV SP V+ YR + Sbjct: 191 PLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPRAKPHLDKFQFHEVLPSPTVNGYRNK 250 Query: 48 AEFRIWHDGDDLYHIIFD-----QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVL- 101 EF + + + F + V P E + VR + L Sbjct: 251 NEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFLP 310 Query: 102 ----------RHKLFQIDYLTTLSNQAVVSLLYHKKLDD----EWRQEAEAL-------- 139 R + + T +V+ +Y L + E +QE ++ Sbjct: 311 FNPDGNIGHFRQLMVRCSSATGE--LMLVAGIYSSNLSEDEQVELKQELKSFYEDLANDA 368 Query: 140 ---RDALRAQNLNVHLIGRA-TKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAM 195 +L Q++ G+ + +I + + + + +R +F Q N Sbjct: 369 PYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTI----QGLQFRISPLAFFQINTEG 424 Query: 196 NIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAA 254 + + A+D+ +K +L++ CG G +LA A++ +V+ EI ++ A++N A Sbjct: 425 ANVLYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAEA 484 Query: 255 NHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ 314 N I N + A++F ++M +++ G L VDPPR+GL + ++ Sbjct: 485 NGIKNAKFFTGNADDFIKSMVREALYDQEPGKPLDL----IAVVDPPRAGLHHRSIAAIR 540 Query: 315 ---AYPRILYISCNPETLCKNLETLS---------QTHKVERLALFDQFPYTHHMECGVL 362 A R++Y+SCNP + +N L+ + + D FP+T H E +L Sbjct: 541 SADAINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVIL 600 Query: 363 LTA 365 Sbjct: 601 FER 603 >UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHC6_9NEIS Length = 437 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 73/374 (19%), Positives = 147/374 (39%), Gaps = 28/374 (7%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP----VSHYRMRAEFRIWHDGDDLYH 61 + ++ AQ+A K + + + PE P HYR R + + Sbjct: 77 MQHVEFTAQVAMKQRVFEEQLQRIGKVQPESLLPPVYGTPWHYRSRTRLAVHTSANGKVV 136 Query: 62 IIFD-QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKL-FQIDYLTTLSNQAV 119 + + +++ + ++ E ++ + + +++ ++ K+ + ++ Sbjct: 137 LGYQAKRSHKIVGINQCLLLPEHVSGCLGIIHDALQDMVNVQPKVGIRSVEISVGEGVTA 196 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHL---IGRATKTKI-ELDQDYIDERLPVA 175 V+++ K+ + + + IG A + D + RLP Sbjct: 197 VNIVSQKRQPENVLCALSGCLNRGAGGKTVWQVWQQIGNAKPQAVSPHDAPPLVFRLPEF 256 Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDR 234 G M ++ FTQ N +N M+ A+ + + +L+CG GNF+L LA+ Sbjct: 257 GLTMPFQL--GDFTQINLPLNEIMVARAVRYLDPQPHERIADLFCGLGNFTLPLAKRAAE 314 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 V+ E + A N AN + N Q +A+ F + R + Sbjct: 315 VVGIEGSAALTQRAVANARANGLPNAQF--ASADLFAATPETLAALGRF----------D 362 Query: 295 TIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLS-QTHKVERLALFDQF 351 + +DPPR+G + + + Y RI+YISCNP TL ++ L+ + ++ + + F Sbjct: 363 KMLLDPPRAGAFAVVQALHAPYLPQRIVYISCNPATLARDAAVLASKGYRFATAGMMNLF 422 Query: 352 PYTHHMECGVLLTA 365 P T H+E + Sbjct: 423 PQTSHVEAIGVFER 436 >UniRef50_C1EBD1 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EBD1_9CHLO Length = 512 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 123/451 (27%), Positives = 193/451 (42%), Gaps = 92/451 (20%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLV---PEVFRSPVS-HYRMRAEFRI-WHDGDDLYH 61 + Y LA+K R++ + + EV+ SP + YR R F I DG L + Sbjct: 62 TNDAYLELLADKTKRVRELFHGGGFIPARGVEVYASPKTRGYRSRCRFAIARDDGGRLRY 121 Query: 62 IIFDQQ---------TKSRIRVDSFPAASELINQLMTAMIAGVR------NNPVLRHKLF 106 +F+ D FP ASE I ++M ++ + N L L Sbjct: 122 ALFENGEVVMLGDDDADEDGDTDVFPWASEPIARVMPVLLELLNDADGSPNARALTTGLS 181 Query: 107 QIDYLTTLSNQAVVSLLYHKKLDD-----------------EWRQEAEALRDALRAQNLN 149 + +L + + VV+L +++ D+ EW +A L +LR+ + Sbjct: 182 AVGFLASRGGEVVVTL-WNRMTDNAGDTNTAGDANTAIGDAEWNDDANGLLSSLRSVGVT 240 Query: 150 VHLIGRATKTKIEL-DQDYIDERLPVAG-----------------------------KEM 179 + R KT + +++ E + V G + + Sbjct: 241 GVVTRRRRKTLVASNGVNHVWEPMTVPGDIPGDIEIIAAVPGDIPGDVGTGTTRSQSRHL 300 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALD------VTKGSKG------------DLLELYCGN 221 Y+QVE +F+ PN + W D + + KG LLELYCGN Sbjct: 301 RYKQVEGAFSNPNGDVAEVTARWLHDACEDILLARNKKGLGLGSTPLSTLPWLLELYCGN 360 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 GN +++L+ F RV A EI VAAA N A N + N + + AE F +A G Sbjct: 361 GNHAVSLSPRFGRVTAVEIEPRLVAAANENFAVNGVANATVTALPAEVFARARTGTGSRG 420 Query: 282 RLQGIDLKSYQCE-----TIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLE-T 335 L G D+ + T+ VDPPR+GLD +T +V + +LY++C+ +L ++L+ T Sbjct: 421 LLDGDDVDQLLADAWRDGTVLVDPPRAGLDEDTLALVAGFGSVLYVACDCASLARDLKST 480 Query: 336 LSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 L +TH+V R+ALFD FP + E V L AK Sbjct: 481 LGKTHEVRRMALFDHFPGSRFCEVVVWLEAK 511 >UniRef50_C7NAY8 (Uracil-5)-methyltransferase n=3 Tax=Leptotrichia RepID=C7NAY8_LEPBD Length = 476 Score = 240 bits (612), Expect = 8e-62, Method: Composition-based stats. Identities = 70/402 (17%), Positives = 143/402 (35%), Gaps = 58/402 (14%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSH-----YRMRAEFRIWHDGDDL 59 + Y+ QL K ++ + +F PV YR + EF + Sbjct: 89 NYQYYTYDEQLEIKTEHIKKELDRIIKYD-YIFEEPVRSVKPDKYRNKMEFSFGNAAKGG 147 Query: 60 YHIIFDQQT---KSRIRVDSFPAASELINQLMTAMIAGVRNNPV-LRHKLFQIDYL---- 111 I+ + + VD + N++ + H+L I + Sbjct: 148 PIILGLHKQNSFHDIVEVDGLKLMDDNFNKIYVFCNEFCKKTGFDFYHRLDHIGFFRNLV 207 Query: 112 ---TTLSNQAVVSLLYHKKLDDEWRQEAEA----------------LRDALRAQNLNVHL 152 + Q +V+++ ++ + +++ + + L N N Sbjct: 208 IRKAEFTKQILVNIVTTTQISEMEKEKFQKEFKEGLLALNLDDNFKITGILHTFNDNFSD 267 Query: 153 IGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKG--- 209 + + I + + E + + ++ SF Q N+ ++ L + Sbjct: 268 MVISESETILYGERDLTEEI----FGLKFKISPYSFFQTNSQTVEKLYGKVLTYLEEIEN 323 Query: 210 ---SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMA 266 + + +L+ G G +++ +V E+ +V A N N+I N I Sbjct: 324 IKIDEATVFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENAKLNNIQNAHFIAGD 383 Query: 267 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISC 324 F +L D + + + +DPPR+G+ +T + Y I+Y+SC Sbjct: 384 V------------FAKLDEFDNDGIKPDILILDPPRAGVGEKTITKLVKYNTKNIIYVSC 431 Query: 325 NPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 NP+TL +L + +++ R ++ D FP T H+E LL Sbjct: 432 NPKTLMTDLIKFGEFGYRLVRCSVVDMFPVTPHLEVVCLLEK 473 >UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1 Tax=Nanoarchaeum equitans RepID=Y053_NANEQ Length = 447 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 78/375 (20%), Positives = 158/375 (42%), Gaps = 53/375 (14%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS-HYRMRAEFRIWHDGDDLYHIIFDQQT 68 Y+ QL K ++++ ++ SP + +YR R ++ I++ + Sbjct: 102 DYQYQLEFKKKVIENLFG----YDKDIIPSPKTIYYRNRMDYPIYNKVSLKEPGKWYG-- 155 Query: 69 KSRIRVDSFPAASE----LINQLMTAM-------IAGVRNNPVLRHKLFQIDYLTTLSNQ 117 I + S+ +IN+ + V++ LR+ + + T Sbjct: 156 --YIPIKECKMLSKEAEIIINEFNKFIEKYKIPSWDTVKHTGFLRYLVIREGKFTKERMI 213 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHL----IGRATKTKIELDQDYIDERLP 173 +++ Y +K +E E ++D + + + + + K ++ ER+ Sbjct: 214 HIIT--YKRKKFEELWDFIENIKDLVTSVYWGIREDLGDVSISEKLYHYYGSKFLRERI- 270 Query: 174 VAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNF 232 ++ Y NSF Q N+ + +++ + + S+ D+ L+LY G G FSL +A Sbjct: 271 ---LDIEYYISPNSFFQTNSYQAVNLVKIVKEFLEPSENDVVLDLYSGVGLFSLQIANEV 327 Query: 233 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 +V+ EI + +V A+ N + N+ID + I E+ + Sbjct: 328 KKVIGIEIVEEAVEMAKLNASINNID-AEFIASPVEK------------------APIIK 368 Query: 293 CETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQTHKVERLALFDQ 350 I VDPPR+GL ++ + ++ I+Y+SCNP T +++ L + +K+ + D Sbjct: 369 ANKIIVDPPRAGLTNKAIEYIEKINPDTIVYVSCNPYTQKRDINKL-KGYKIIDMQPLDM 427 Query: 351 FPYTHHMECGVLLTA 365 FP T H+E +L+ Sbjct: 428 FPNTPHIENVILMKK 442 >UniRef50_C8W8Q1 RNA methyltransferase, TrmA family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W8Q1_ATOPD Length = 415 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 80/413 (19%), Positives = 145/413 (35%), Gaps = 79/413 (19%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDL-----VPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIF 64 Y QL K +++ ++AP + + P YR +A F Sbjct: 23 PYPIQLKRKQAQVEELLAPLASINNVTIEPIRGMDEPLAYRHKAATPFAPGKGRTVRSGF 82 Query: 65 DQ-QTKSRIRVDSFPAASELINQLMTAM-----------IAGVRNNPVLRHKLFQIDYLT 112 T I ++ + R LRH + + Y T Sbjct: 83 YASGTHQIIASKECLVEDGRARAILNDVAYLAGQFNIHAYQEDRGKGALRHAVVRCGYAT 142 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDA---LRAQNLNVH------LIGRATKTKIEL 163 + ++ L+ + + ++ ALR A L + LNV+ ++GR +T++ Sbjct: 143 ---DDVMLVLVVNGQRLPHEQEFIAALRKAHPELTSIFLNVNQKRTNAILGR--ETRLLW 197 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD------------------ 205 + ++L + SF Q N + + A+D Sbjct: 198 GSTSMSDKL----LNCTFEIGPTSFYQTNPQQTEALYQLAIDGALAGSKQTGATLTEAST 253 Query: 206 ----VTKGSKGDLLELYCGNGNFSLALARNFDR------VLATEIAKPSVAAAQYNIAAN 255 + +L+ YCG G L LA + + + + ++ A+ N N Sbjct: 254 QTDASAPANNLRILDAYCGTGTIGLCLAHVAEAQGVNLLLTGVDQVENNIQMARRNARNN 313 Query: 256 HIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ- 314 ++ + I A + QA+ + I +DPPR+G K Sbjct: 314 KLE-AEFICDDATRYMQAL------------AKDGQNFDVIILDPPRAGSTPAFLKATAQ 360 Query: 315 -AYPRILYISCNPETLCKNLE-TLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 A +I+Y+SCN T ++L+ L +ER+ D FP+T H+EC V+L+ Sbjct: 361 LAQKKIVYVSCNVVTQARDLKVLLDSGFAIERVTPVDMFPHTKHVECVVVLSR 413 >UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMB5_9FIRM Length = 448 Score = 239 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 78/381 (20%), Positives = 166/381 (43%), Gaps = 40/381 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAP-----FSDLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 H +YE +L K + D+ ++ + +YR + E ++ D + Sbjct: 76 HFINLKYEKELELKKKMFLDSLRKNTGIELEDVEILENKNNL-NYRNKIELKMNEDFELC 134 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRH-------KLFQIDYLT 112 Y + +S+I++++ P + E IN+ + + A ++ + + L I + Sbjct: 135 YCV---DNGESKIKLENCPLSDECINKFLPFLQAKLKEFKINSYDVNTDEGILKNISIRS 191 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD----YI 168 ++ +++++ K + + ++L + + + +++ K I + Q+ ++ Sbjct: 192 NYKSEIMITVVVKKDIVEA-HNFVKSLSEYEKLVSGYINI--NTKKASIIMGQEIKLIFL 248 Query: 169 DERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLA 227 + + + SF Q N + + A D G+K +LL+LY G G S+ Sbjct: 249 KKSFTDKIGKYEFNISPKSFFQVNRFQTENLYKIAKDFLGGNKDKNLLDLYSGIGTTSIY 308 Query: 228 LARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 287 + NF +V+ E+ K +V A+ N+ N + NV+ + +EE + + Sbjct: 309 FSENFKKVIGVEVVKDAVKDAKENLKLNDVKNVEFLYGKSEEKIEEI------------- 355 Query: 288 LKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTHKVER 344 LK+ + I VDPPR GLD + + +++Y+SCN TL ++L+ ++++ Sbjct: 356 LKNNNIDIISVDPPRKGLDKKVVDTIIKSNIKKVVYVSCNGATLTRDLKYFIDGGFELKK 415 Query: 345 LALFDQFPYTHHMECGVLLTA 365 + L D F T H E V + Sbjct: 416 VKLCDMFSKTGHCEVVVEIEK 436 >UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase RumA n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D2C9 Length = 470 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 78/400 (19%), Positives = 145/400 (36%), Gaps = 59/400 (14%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWH------- 54 YE+QL K +++ + L+P V + YR + EF Sbjct: 87 QDMNYESQLFYKQKEVENNLVRLGKITIPELMPIVASENIYFYRNKMEFSFSDMRWLTPE 146 Query: 55 ------DGDDLYHIIFDQQT--KSRIRVDSFPAASELINQLMTAMIAGV----------- 95 + + F + +D + N + + Sbjct: 147 EIQNADTIEQRNGLGFHIAGAWDKILDIDKCYLQEDPSNAIRLEIKRFALENNIAFYSPR 206 Query: 96 RNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK------LDDEWRQEAEALRDALRAQNLN 149 + VLR + +I + + + ++ + + L + Q + N Sbjct: 207 QQTGVLRSMMIRI----SSTGEIMLVIQFFSDSKKCNLLLEHIAQTFPQITSLQYCINSK 262 Query: 150 VHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKG 209 + KI D I E + + + ++ SF Q N+ ++ + D Sbjct: 263 GNDAIYDQDLKIYKGTDCIYEEM----EGLRFKINAKSFYQTNSKQAHKLYQITRDFADL 318 Query: 210 SKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE 268 +L+ +LY G G + +AR +V+ E ++A A+ N AN I+NV + Sbjct: 319 KGDELVYDLYTGTGTIAQFVARKAKKVVGVEAVPEAIADAKANAKANGIENVSFYVGDMK 378 Query: 269 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNP 326 F + G + I DPPR G+ + + + A P+I+Y+SCN Sbjct: 379 NVFN-----DTFIKANG------TPDVIITDPPRDGMHKDVVEQILQIAPPKIVYVSCNS 427 Query: 327 ETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 T ++L L + +KV ++ D FP T+H+E VLL + Sbjct: 428 ATQARDLALLDEMYKVTKVQPVDMFPQTYHVENVVLLEKR 467 >UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Neisseria RepID=D0WBI8_NEILA Length = 443 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 82/374 (21%), Positives = 145/374 (38%), Gaps = 34/374 (9%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS----HYRMRAEFRIWHDGDDL 59 +H+ AQ+A K ++ + + P+ P+ HYR RA F + D Sbjct: 82 QHISP---AAQVAFKQRMMEEQLERIGKVRPQQILPPIYGYARHYRDRARFSVSLDKLCR 138 Query: 60 YHIIFD-QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + F ++T + + S + ++ + A+ +++ L + + Sbjct: 139 LKLGFQAKKTNDVVDISSCMLLPKPVSDKLPAIRGLLQD---LAEEGSVARFAEFYRGSE 195 Query: 119 VVSLL--YHKKLDDEWRQEAEALRDALRAQNLNVHLI--GRATKTKIELDQDYIDERLPV 174 + L + KL D+ + V L G ++ + LP Sbjct: 196 ITVLNIAFKSKLRQNEENRIRQWFDSELSDGWQVWLQIEGGVSQPFYPKTDKTLKYTLPE 255 Query: 175 AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFD 233 G EM +R FTQ N N M+ A+ + +G+ + +L+CG GNFSL + ++ Sbjct: 256 FGIEMPFR--PGDFTQINTDTNRLMVSRAVKMLDIRQGERIADLFCGLGNFSLPMVKSGA 313 Query: 234 RVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 V+ E A+ V A N N D I AA F V + R Sbjct: 314 DVVGIEGAENLVRRAWQNARLNGCDGQTDFI--AANLFDCTEKTVASWGRF--------- 362 Query: 293 CETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETL-SQTHKVERLALFD 349 + + +DPPRSG + + Y +I+Y+SCNP TL ++ L + + + + + Sbjct: 363 -DKMLIDPPRSGAYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYILSGAGIMN 421 Query: 350 QFPYTHHMECGVLL 363 F T H E + Sbjct: 422 MFAQTSHTESVAVF 435 >UniRef50_A6GEE5 RNA methyltransferase, TrmA family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GEE5_9DELT Length = 466 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 96/387 (24%), Positives = 154/387 (39%), Gaps = 43/387 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP----VSHYRMRAEFRI-WHDGDDL 59 HL + Q+A K L S L PE + P YR RA W G D Sbjct: 96 HLDP---DEQVALKQRWLASDFEGHG-LAPERWLEPLRAEPWAYRRRARLGAKWVAGKDK 151 Query: 60 YHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + F +Q K I ++ + + ++ + L K+ Q++ Sbjct: 152 VVVGFREQDKRFIANLEGCEVLAGRHGGALIPKLSELIAGLSLATKIPQVEVSVADDTDG 211 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDY----------- 167 V+ L + L+ ++ E LR A+ L V L + T + Sbjct: 212 AVTALVFRVLEPPTDEDRERLRAFAAAEGLRVFLQSKGLDTVALFADERGQTEGEGFEDA 271 Query: 168 --IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELYCGNGNF 224 + LP ++ +R F Q NAA+N M+ A+++ +L+L+CG GNF Sbjct: 272 RELSYALPEFELDLRFR--PTDFVQVNAAINRSMIARAVELLALEPEHRVLDLFCGLGNF 329 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 SLALAR V E VA A N N + N + E V E L Sbjct: 330 SLALARRAGAVFGVEGDAGLVARAAANAERNGLSNARF------EVRDLYTQVGELEWLG 383 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQ----AYPRILYISCNPETLCKNLETL--SQ 338 G + + + +DPPRSG + E + + PR++Y++C+PETL ++ L + Sbjct: 384 GQPV-----DRVLLDPPRSGALAIVEHIDRIAWAGKPRLVYVACSPETLARDAAVLVGTH 438 Query: 339 THKVERLALFDQFPYTHHMECGVLLTA 365 +++ + D FP+T H+E L Sbjct: 439 GYRLSAAGVMDMFPHTAHVESIALFER 465 >UniRef50_A0YBC1 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YBC1_9GAMM Length = 458 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 77/368 (20%), Positives = 148/368 (40%), Gaps = 27/368 (7%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD----LVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 L Y +Q K RL + +P+ D LV YR RA F + Sbjct: 101 LQHLDYPSQTQHKWDRLSQLFSPWLDNDDRLVMGSITGDPWSYRHRARFAVDASKHSCNI 160 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVS 121 ++ + + + IN + + V++ R + ++ S ++ Sbjct: 161 GFRQARSHKVVDITRCSIVFDGINDALATVRRLVKSLKN-RSVINEVSITEDSSGNIGIA 219 Query: 122 LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD-YIDERLPVAGKEMI 180 + + L + A+ + + ++ + AT T+ +D + + +++ Sbjct: 220 IFCTRPLSAS---DIAAVSEHAITHDCHIEVRSSATATQCMFPEDRSVALSYTLDSYDVV 276 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLALARNFDRVLATE 239 + FTQ N A+N +++ + + + D++ + +CG GNFSL ++ R + E Sbjct: 277 IPYTVDDFTQVNPAINHRLVALTIKWLQLGEKDIVADFFCGIGNFSLPISTFVARTVGFE 336 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 299 V A+ N NHIDN + + + + +D Sbjct: 337 WVASMVDKARSNAVFNHIDNCEF---------------KVIDLTADRLVIDEDFNKALLD 381 Query: 300 PPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQT-HKVERLALFDQFPYTHHM 357 PPR+G + +++ + RI+YISCNP TL ++ + L+Q +++ L+L D FP T H Sbjct: 382 PPRAGAEKICKQLAESKLERIVYISCNPRTLARDSKILTQGNYQLTELSLADMFPQTVHS 441 Query: 358 ECGVLLTA 365 E L T Sbjct: 442 EVVALFTR 449 >UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDZ7_9FIRM Length = 484 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 83/375 (22%), Positives = 151/375 (40%), Gaps = 43/375 (11%) Query: 12 EAQLAEKVVRLQSMMAPFSDLVPE----VFRSPVS-HYRMRAEFRIWHDGDDLYHIIFDQ 66 EAQL K +Q + ++ L + V SP YR + + I + L + +F++ Sbjct: 90 EAQLQVKRELVQEALIKYAGLSRDKVQPVIASPSGLGYRNQCKLPIREERGRLVNGLFEE 149 Query: 67 QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLL--- 123 + + + + L ++A F++ + +L+ Sbjct: 150 GSNRVMPIAHCLIHDPDLEALRKQILALANQ--------FRLKAYDPKKGTGLRTLVLRG 201 Query: 124 ----YHKKLDDEWRQEAEALRDALRAQNLNVHLIGR---ATKTKIELDQDY----IDERL 172 Y L + + L+A ++ +T+ + ++RL Sbjct: 202 FEGQYQCVLVSGEDSLPKGFIEKLKAIEGMTCIMQNINPDKRTRQLFSNRWSLLAGEDRL 261 Query: 173 PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNF 232 PV ++ SF Q N +QM+ A + + L+E Y G G SL L Sbjct: 262 PVQFGDVRLSLSCASFFQLNRPQALQMMRMAASLIEPC-DTLVEAYSGVGGISLMLKEKA 320 Query: 233 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 ++ E +V A+ N N +NV+ + A + + + ++ + Sbjct: 321 KTIIGIEFVPEAVENAKENARLNRAENVRFVCGDAAKEMKKI-------------IRRTK 367 Query: 293 CETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQTHKVERLALFDQ 350 + + VDPPR+GLD + ++ +I+YISCNP TL KNL+ L ++V+ + FD Sbjct: 368 IDAVVVDPPRTGLDGAMIESLRQCQPKQIVYISCNPATLGKNLKELRDLYEVKTVIPFDM 427 Query: 351 FPYTHHMECGVLLTA 365 FP T H+E VLL+ Sbjct: 428 FPNTPHVETVVLLSK 442 >UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 Tax=Bacteria RepID=B9KXM9_THERP Length = 406 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 76/369 (20%), Positives = 135/369 (36%), Gaps = 67/369 (18%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 +YE QL K ++ + P V YR A F + G+ L Sbjct: 90 QWQHIRYEYQLVLKQAVVRQQLRRIGKFDDPPVLPTVPSPQPYGYRNHARFSVDGKGN-L 148 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 +I +R+D IN+++ + ++H+L Sbjct: 149 GYISRPGHGYRFLRIDRCLIMHPAINEVLRRLQERAH----VKHQLM------------- 191 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 +R + L VH A I Q E L Sbjct: 192 -------------------VRYGVNTGELLVHPDVSAIDPTIPSGQPAYHESL----LGH 228 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLALARNFDRVLAT 238 +R +SF Q N A+ ++++ L+ + +++ + Y G G F+ LA RV+ Sbjct: 229 RFRISASSFFQTNTAVAERLIQLVLERIAPTGNEVVVDAYAGVGTFAAFLAPRVARVIGI 288 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E + +V+ AQ N+ DNV+ ++ E + + + + + Sbjct: 289 EESPSAVSDAQVNLD--PFDNVEYVQAKVEHVLGKLA---------------VRPDVVIL 331 Query: 299 DPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTH 355 DPPR G E ++ PR++Y+SC+P TL ++L L +++ + D FP T+ Sbjct: 332 DPPRVGCAPEALTGVLMLRPPRLIYVSCDPATLARDLRKLVDGGYRLLDVTPLDMFPQTY 391 Query: 356 HMECGVLLT 364 H+E L Sbjct: 392 HIESVATLE 400 >UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 Tax=Streptococcaceae RepID=YWFF_LACLA Length = 513 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 72/412 (17%), Positives = 141/412 (34%), Gaps = 61/412 (14%) Query: 1 MTPEHLPTEQYEAQLAEKVVRLQSMMAPF-------SDLVPEVFRSPVSHYRMRAEFRIW 53 M+ H+ Y QL K ++ + + +L + YR + +F++ Sbjct: 80 MSQSHIMHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVR 139 Query: 54 HDGDDLYHII-FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV----------LR 102 D + + T + +D+ +++ + + + +R Sbjct: 140 RLNDGTVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLPVYDERKIGGIR 199 Query: 103 HKLFQIDYLTTLSNQAVVS-------------------------LLYHKKLDDEWRQEAE 137 + + T V+ + K+ +E E Sbjct: 200 TVMVRRSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQKNSFVKFDKMLSALTEEFE 259 Query: 138 ALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNI 197 + + +T+I ++ E + + + +F Q N+ Sbjct: 260 EIVTVAVNFHPRKTSEIYGERTQILFNEK---ETITEGVLDYEFELSPRAFYQLNSEQAN 316 Query: 198 QMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANH 256 + A+ K D +++ YCG G A+A+ V +I S+ A+ N Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLG 376 Query: 257 IDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY 316 + N AE N ++ + VDPPR+GLD + + + Sbjct: 377 LKNCHYEIGKAERIIPNWNK------------SGHRATAMIVDPPRTGLDDALLETITKF 424 Query: 317 P--RILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 P +++Y+SCN TL K+L L+ +KVE + D FP+T E V LT + Sbjct: 425 PPEKMVYVSCNVSTLAKDLVVLANFYKVEYIQSVDMFPHTARTEAVVKLTKR 476 >UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=Desulfovibrio RepID=C4XJA3_DESMR Length = 450 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 145/386 (37%), Gaps = 53/386 (13%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDL----VPEVFRSP-VSHYRMRAEFRIWHDGDDLYHIIF 64 Y AQL K ++ +A L V + SP V YR + EF H+ Sbjct: 88 DYPAQLFWKREQVAETLARLGGLPDVPVADTVASPEVYGYRNKMEFAF----AGRLHLGL 143 Query: 65 DQQTK--SRIRVDSFPAASELINQLMTAMIAGVRNNPVL-------------------RH 103 ++ + +D+ P + +++ A+ R + RH Sbjct: 144 RERRNPARVLDIDTCPLMAPWAGEVVNAVRELCRETGLAAYDPRTGKGVWRHLVLRDSRH 203 Query: 104 KLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL 163 ++ ++ T ++A ++ L L + + + + I L Sbjct: 204 DGSRLAHIITGPSRAAGDAVHT--LGKTLLARFPELTGFVHSVRRAPTPVAHGERQSIVL 261 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWA-LDVTKGSKGDLLELYCGNG 222 + ++ E++ + R + ++F Q N + E + + G L+LYCG+G Sbjct: 262 GRGHLTEKM----GQATLRVLPDAFAQTNTGAAQSLYEIVTREASSDPAGTALDLYCGSG 317 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 +L LA F V +I S+ +A+ + + N Sbjct: 318 GLALNLAPAFAEVRGLDIDPRSIESAKASAKLSEAHNCVF--------------EAADAA 363 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTH 340 DL + +DPPR+G E + A R++Y+SCNP TL ++L+ L++ + Sbjct: 364 DALDDLAGDPPTVVVLDPPRAGAAPEVIAAILRTAPGRVVYVSCNPATLARDLKRLAEAY 423 Query: 341 KVERLALFDQFPYTHHMECGVLLTAK 366 V + D FP+T H+E LT + Sbjct: 424 DVTSVTPVDLFPHTAHIEAVASLTLR 449 >UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGS6_PETMO Length = 446 Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats. Identities = 74/384 (19%), Positives = 157/384 (40%), Gaps = 51/384 (13%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV-----SHYRMRAEFRIWHDGDDLYHIIF 64 Y++QL K ++ + L V + YR R E+ + + L + Sbjct: 85 DYKSQLKSKTEIVKEQLERIGKLDSSVVNDIIESDLIWGYRNRMEYTF-QENNKLKLGLN 143 Query: 65 DQQTKSRIRVDSFPAAS-----------ELINQLMTAMIAGVRNNPVLRHKLFQIDYLTT 113 + + + + S P + EL+N+L + +L+H + + + Sbjct: 144 IANSNNVLDIYSCPISPNLFDNIRNKFRELVNKLNIEIYDKKTKKGILKHLVIRRSFSKN 203 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI------ELDQDY 167 + +V+ + ++E +Q + +L +HL+ + + L + Sbjct: 204 QTMVIIVTNTEYLPYEEEIKQF---FQQNFHPYSL-IHLMNSSDSVVLRGPYKTLLGEGV 259 Query: 168 IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKG---SKGDLLELYCGNGNF 224 ++E + ++ SF Q N + ++L L+ K +L+LY G G F Sbjct: 260 LNEEF----DDFKFQIPPTSFFQNNYNVTQKLLRHILEYFKSNAQKDATMLDLYSGVGLF 315 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 S+ + F + + E +K SV AA N N NV I + ++ Sbjct: 316 SIYFSPLFKHIESVETSKVSVKAAIANSHINFTKNVNFILAS--------------SKPY 361 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPR--ILYISCNPETLCKNLETLSQ-THK 341 + S + + + +DPPR GL+ + +++ + + I+Y+SC+P T ++L ++ Sbjct: 362 LMKNSSKRFDYVILDPPRKGLEKKEIQLLSSMAKKGIIYVSCDPSTFARDLNLFTKNGFT 421 Query: 342 VERLALFDQFPYTHHMECGVLLTA 365 ++ + FD FP+++H+E +L Sbjct: 422 LKSVQPFDMFPHSYHIENVGILEK 445 >UniRef50_A1VQF1 23S rRNA (uracil-5-)-methyltransferase rumA n=8 Tax=Burkholderiales RepID=RUMA_POLNA Length = 490 Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 142/390 (36%), Gaps = 47/390 (12%) Query: 13 AQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH-DGDDLYHIIFDQQ 67 AQ+A K L+ + + + P+ HYR RA + + + F ++ Sbjct: 110 AQVAVKQRVLEDNLRFIGKVKADNLLRPIEGPAWHYRYRARLSVRYVRKKGTALVGFHER 169 Query: 68 TKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHK 126 + + + + ++ ++ + + + R + QI+ A+V L + + Sbjct: 170 KSAYVADMTECHVVPQHVSDMLVPLRGLISSMDA-RETIPQIELACGDDLTAMV-LRHME 227 Query: 127 KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDY--IDERLPVAGKEMIYRQV 184 L A A L + T LD + LP G M ++ Sbjct: 228 PL--SVADLARLRAFAAANAGLQWWVQSGGLDTVKLLDAQVAELSYGLPEFGITMPFK-- 283 Query: 185 ENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKP 243 FTQ N +N ++ AL + + +++ +CG GNF+L LA VL E ++ Sbjct: 284 PTDFTQVNPHINQVLVSRALRLLGVQPTERVIDWFCGLGNFTLPLATRAREVLGIEGSEV 343 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 VA ++ N N + + A +F F + +K E VDPPR Sbjct: 344 LVARSRENYERNKASSHVRPALEATKFV----ARNLFEMTPAMLVKDGAAEKWLVDPPRE 399 Query: 304 GLDSETEKMVQAYP--------------------------RILYISCNPETLCKNLETLS 337 G + + + RI+Y+SCNP TL ++ L Sbjct: 400 GAFELFKSLAALHQQVVTGVPCDDGIHQQSLALGGWTPPSRIVYVSCNPATLARDAGVLV 459 Query: 338 Q--THKVERLALFDQFPYTHHMECGVLLTA 365 + ++ + + FP+T H+E + Sbjct: 460 EGGGYRCTAAGVVNMFPHTAHVESMAVFER 489 >UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFJ7_ACHLI Length = 451 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 78/389 (20%), Positives = 153/389 (39%), Gaps = 50/389 (12%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSD------LVPEVFRSPVSHYRMRAEFRIWHDGD 57 +H Y A L +K ++ + + + + +YR +A + + Sbjct: 87 QHFD---YNAMLNQKKDIIKKALDRYVKRYDAHIISDTIGMDNPKNYRNKASLPLRLIDN 143 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAM-----------IAGVRNNPVLRHKLF 106 +F + + + + +++ IN + T M V ++ H + Sbjct: 144 KNRFGMFARNSNAFVPINTCGVQHTKINDIFTTMTSLMDRYHIDAYDPVLQTGIISHAIV 203 Query: 107 QIDYLTTLSNQAVVSLLYHKKLD--DEWRQEAEALRDAL----RAQNLNVHLIGRATKTK 160 +I T N+ V+ + K D D E L + + N +V Sbjct: 204 RI---TENLNEVQVTFILSKAFDGLDNLVHELVKLHPEIMSIYKVINPDVRQSYFTEDIH 260 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYC 219 + ++ I+E+L + ++F Q N + + + + + +++ Y Sbjct: 261 LIYGKEMIEEQL----GGHTFSLSPDAFFQLNTSQADKFYNEMKRLAQIKPTEIVVDAYA 316 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G S + ++ + A EI + +V +A+ ++ NHIDNV +I E+ Sbjct: 317 GIAPISHYIGQDAKHIYAIEINEDAVKSAKISLDQNHIDNVTVIENNFEDALD------- 369 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLS 337 +LK + + + DPPRSGL + + + Y R++Y SCNP TL K+L L Sbjct: 370 -------NLKDIKIDVMLFDPPRSGLGEDVIQTILKYKPKRLVYGSCNPSTLAKDLSLLL 422 Query: 338 QTHKVERLALFDQFPYTHHMECGVLLTAK 366 + + ++ + D FPYT +E LL K Sbjct: 423 EDYDLKHITPIDMFPYTSLVESITLLELK 451 >UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MLF0_9CHLO Length = 549 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 80/410 (19%), Positives = 149/410 (36%), Gaps = 55/410 (13%) Query: 11 YEAQLAEKVVRLQS---MMAPFSDLVPEV-FRSPVS---HYRMRAEFRIWHDGD---DLY 60 Y+ QLA K ++ +A +D V SP YR + EF GD Sbjct: 129 YDQQLAFKRDQVVDVMTRIARINDADRIVNAISPSQQRLRYRNKMEFAFAQVGDNSSGRP 188 Query: 61 HIIFDQQTKSRIRVDSF--------PAASELINQLMTAMIAGV------------RNNPV 100 V+ F A +++ + + A V Sbjct: 189 AFGLRPAGDHTGLVEVFTSGCVLQQVVADKVLARCAAHLHAMADVSALLPVFNRRTGCGV 248 Query: 101 LRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK 160 LR + L + ++ D +E + AL A + + + Sbjct: 249 LRSLTLRTAPLAGRCSGETAVMVIIAAALDRQGKETKKAFAALAADLATIDCVQSVVHER 308 Query: 161 IELDQD------YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD---VTKGSK 211 + + + + + + + +++ SF Q N ++E + +T + Sbjct: 309 VGDNNENQITVLHGPATISITLRGVVFALSVKSFFQTNTKQAEILVESVEEACALTGENT 368 Query: 212 GDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT 271 +L+L+CG G F L LA V EI +V A+ N AN I+N + + + Sbjct: 369 ETILDLFCGVGTFGLCLASKARHVYGCEIVPEAVEDAKRNAVANRIENATFWQADLAQLS 428 Query: 272 QAM--NGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPE 327 ++M + ++ + + + VDP RSG+D ++++ PRI+Y+SCNP Sbjct: 429 ESMLCADSKSMSKSIVFGKDVVRPDVVIVDPARSGMDVTLVAILRSLGIPRIVYVSCNPA 488 Query: 328 TLCKNLETLS------------QTHKVERLALFDQFPYTHHMECGVLLTA 365 T +++ L +++ D FP+T H+E V+L Sbjct: 489 TQARDVALLCDVSDNTQSGDLLAKYRLISCIPVDLFPHTPHVENIVVLER 538 >UniRef50_C2L0H1 TrmA family RNA methyltransferase n=1 Tax=Oribacterium sinus F0268 RepID=C2L0H1_9FIRM Length = 400 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 71/381 (18%), Positives = 132/381 (34%), Gaps = 66/381 (17%) Query: 44 YRMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAAS---ELINQLMTAM--------I 92 + + + DL + + I S LI + Sbjct: 24 WSGKNKIEAKEKSSDLSMGFYGFHSHRIIETKDCLINSAENPLILNCIKEWAREYKISGY 83 Query: 93 AGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDAL--------- 143 +LRH + + T + ++ L+ + K ++ E L+ L Sbjct: 84 EEETGKGLLRHIFLRKGFST---GEILLCLVLNGKSLPHGKELWENLQGLLLSAEEGDLQ 140 Query: 144 --------------------RAQNLNVHLIGR-------------ATKTKIELDQDYIDE 170 + + ++G +T +D I++ Sbjct: 141 REEDVSCGMDAQSQEDVYCGKNGTVQGSIVGLCVNINEGSGNAILGRETLCLYGKDSIED 200 Query: 171 RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALA 229 ++ E+ + SF Q N ++ AL+ + + + + YCG G SL LA Sbjct: 201 KI----GELSFSISVPSFYQVNPVQTEKIYGKALEYAALTGEETVWDCYCGIGTISLFLA 256 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAM--NGVREFNRLQGID 287 + +V EI ++ A+ N N + N + AAEE RE + Sbjct: 257 QKAKQVYGLEIVPEAIENAKKNAEKNGLQNAEFFVGAAEEVLPKWVEEQKRELSAKGADC 316 Query: 288 LKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKVER 344 + + +DPPR G D V + RI+Y+SC+P +L ++++ L + + +E+ Sbjct: 317 GIGDMVDVVSLDPPRKGCDEACLSAVLELSPKRIVYVSCDPGSLARDIKYLGEGGYVLEK 376 Query: 345 LALFDQFPYTHHMECGVLLTA 365 D FP T H+E LL Sbjct: 377 WVGIDNFPRTGHVETIALLQK 397 >UniRef50_Q1MXP1 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Bermanella marisrubri RepID=Q1MXP1_9GAMM Length = 448 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 83/369 (22%), Positives = 154/369 (41%), Gaps = 33/369 (8%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIW--HDGD 57 +HL ++ Q+ K LQ A + +++P+ YR RA I H Sbjct: 102 QHLSSQH---QIPYKQNNLQHEFASKLKIDSAPWQTPITGDAYGYRRRARIGIRYRHKTG 158 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 ++ +QQ + P + L+ ++ + ++ + + Q L + Sbjct: 159 EVIVGFREQQNSHLTDISECPVLVSELQNLIPSLKSVLKKVQKV-EVVTQAQLLAG-DDL 216 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGK 177 +VVSL K L + + + L + +++ + + + G + D + L Sbjct: 217 SVVSLRAIKSLP---QSDKQILIEWAKSEAVQLDIQGDDAIETLFQPND---KTLWFNVA 270 Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVL 236 M NSF Q N +N QM++ AL + +L+L+ G GNF+L LA++ RV Sbjct: 271 GMRIHFASNSFIQANGRVNEQMVQTALQWLNVKAHETVLDLFAGLGNFTLPLAQHAKRVC 330 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 A E+ K VA Q+N N + NV + + + + I Sbjct: 331 AVELDKKMVADLQHNAQRNELSNVDVQLGNLDNLDAV--------------ERLSAADVI 376 Query: 297 FVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTH 355 +DPPR+G + + R+LY++C P +L ++ L + K++++ + D FP T Sbjct: 377 VLDPPRAGAAVIMPWVAKQKSRVLYVACEPSSLIRDAAVLVESGFKLDKVVVLDMFPQTK 436 Query: 356 HMECGVLLT 364 H+E L + Sbjct: 437 HVETMALFS 445 >UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Roseiflexus RepID=A7NGT5_ROSCS Length = 439 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 150/375 (40%), Gaps = 45/375 (12%) Query: 5 HLPTEQ--YEAQLAEKVVRLQSMMAPFSDLVPEV-----FRSPVSHYRMRAEFRIWHDGD 57 H+P + ++AQ + L +A F+ + P V F S YR D Sbjct: 90 HMPWQHIAFDAQQRLRRQILADQLAKFAGVDPAVVEATAFASKPWEYRNNTRLHC----D 145 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 ++ T+S +D P ++N+ + A+ + + + L ++ Sbjct: 146 GRRIGYYESNTRSIAELDHDPLLHPVLNEALAALRSALADELDDAPPLEVTLRVSEAYGY 205 Query: 118 AVVSLLYH---KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPV 174 + +L + L WR L V L D + E L Sbjct: 206 CIAALRGRGDRRSLAARWRARCPVLA--------GVVFTVPPPHMLPPLGADTLVEELA- 256 Query: 175 AGKEMIYRQVENSFTQPNAAMNIQMLEWALD-VTKGSKGDLLELYCGNGNFSLALARNFD 233 ++ + +F Q N A +L + ++G LL+LYCG G F+L LARN Sbjct: 257 ---DLTFLLRPTTFFQVNVAAAATLLNLIRAGLGDEARGRLLDLYCGAGAFTLPLARNAI 313 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 ++ E +VA A+ + A NHI NV+ I +AE ++G Sbjct: 314 EIVGVEEYAGAVADAERSAAVNHISNVRFITGSAEAVLANLDG---------------PF 358 Query: 294 ETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQ 350 + + +DPPR G + +A RI+Y+SC+P TL ++L+TL + + V R D Sbjct: 359 DAVVLDPPRRGCHPRVLHALIERAPRRIVYVSCHPATLARDLKTLIAGGYAVVRATPVDL 418 Query: 351 FPYTHHMECGVLLTA 365 FP T H+E V L Sbjct: 419 FPQTPHIESVVALMR 433 >UniRef50_C4G0G8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0G8_ABIDE Length = 514 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 77/422 (18%), Positives = 155/422 (36%), Gaps = 88/422 (20%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLV---PEVFRSP-VSHYRMRAEFRI---WHDGDDLYHI 62 YE QL K +++ M+ E+ SP R + E+ + G + Sbjct: 89 PYEEQLKLKSTQVKKMLDRVITTDYEYEEILGSPNEWETRNKMEYAFGDSYKGGPMSLGL 148 Query: 63 IFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-----------LRHKLFQIDYL 111 + D ++ N+++ + + LRH L + Sbjct: 149 HKRGHFHDILYTDDCKIVNDDFNKVLRCVFEHFNEAEISFYNKAMHRGYLRHLLVR---R 205 Query: 112 TTLSNQAVVSL-----------------------------LYHKKLDDEWRQE--AEALR 140 + + +V+L +Y K + ++ + Sbjct: 206 AAKTGEILVALETSSDFITKSEKNAMEMDSLKEFLASSNAVYDKDKEQSQAEKNILAKMV 265 Query: 141 DALRAQNLNVHLIG-------------RATKTKIELDQDYIDERLPVAGKEMIYRQVENS 187 + LR +L ++G +A + +I +DYI+E L + ++ S Sbjct: 266 EKLRKVSLEGEIVGIIHLINNEVSDDVKAERQEILFGRDYINEEL----LGLKFKITTFS 321 Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVA 246 F Q N+ + + ++G+++ +LY G G ++ +V+ EI + +V Sbjct: 322 FFQTNSLGAEVLYSKVREYVGNNEGNVVYDLYSGTGTIGQIISPVAKKVIGIEIVEEAVI 381 Query: 247 AAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD 306 AA N N + N + + + +D + + I +DPPR G+ Sbjct: 382 AANENAKLNGLTNTEFLAGDV---------------FKVLDEVKEKPDFIILDPPRDGVS 426 Query: 307 SETEKMVQAY--PRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLL 363 + K V +Y I+YI+C P +L +++ ++V+++ L D FP T H+E LL Sbjct: 427 PKALKRVLSYGVRDIVYIACKPTSLVRDIPEFEAVGYRVKKVCLCDMFPETLHVETVCLL 486 Query: 364 TA 365 + Sbjct: 487 SK 488 >UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusobacteriaceae RepID=D1AXU5_STRM9 Length = 466 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 80/395 (20%), Positives = 155/395 (39%), Gaps = 51/395 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMA-----PFSDLVPEVFRSPVSHYRMRAEFRI---WHDGD 57 YE Q K + ++ + +P V YR + EF + DG Sbjct: 85 FQYLSYEKQAELKANLVYKLIDNSIKNKNYEKLPIVTMGNDKEYRNKMEFSFGNEYKDGP 144 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-LRHKLFQIDYLTTL-- 114 + + + V+ E +++ + H+L I +L L Sbjct: 145 IILGLHKKNSFHDIVNVNECRLMDENFRKIVRFTNDFFSKKDISFYHRLTHIGFLRNLVI 204 Query: 115 -----SNQAVVSLLYHKKLD-----DEWRQEAE------ALRDALRAQNLNVHLIGRATK 158 + + V+++ +++ DE++++ L+ + N N RA K Sbjct: 205 RKGEKTKELGVNIVTTSQIENYDIIDEYKEKLLCLDLSMGLKSIIHTINDNKSDSVRADK 264 Query: 159 TKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT-----KGSKGD 213 I + I ERL ++ + SF Q N+ ++ + ++ K Sbjct: 265 EIILYGKRDITERL----FDLSFNVSPYSFFQTNSFGVEKLYQEVINNLLFITKNDEKPI 320 Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 + +L+ G G +++ V E+ + +V A N N I N + I Sbjct: 321 VFDLFSGTGTIGQIVSKYSKEVYGIELIEEAVIKANENAIKNGITNAKFIAGDV------ 374 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCK 331 F +L+ D ++ + + + +DPPRSG+ +T + Y I+Y+SCNP+TL + Sbjct: 375 ------FEKLREFDKENIKPDILILDPPRSGVGEKTILKLLEYNVNYIIYVSCNPKTLAE 428 Query: 332 NLETLS-QTHKVERLALFDQFPYTHHMECGVLLTA 365 +L+ ++ ++R+ D F YT H+EC VL+ Sbjct: 429 DLKIFEYNSYILKRVVCVDMFGYTPHVECIVLIQR 463 >UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780 n=3 Tax=Thermococcaceae RepID=Y1078_PYRAB Length = 405 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 76/375 (20%), Positives = 150/375 (40%), Gaps = 57/375 (15%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP-VSHYRMRAEFRIWHDGDDLYHIIF 64 L Y+ QL K +L+ ++ EV SP + +R R + I DG I F Sbjct: 72 LQHLNYDYQLEFKRKKLKRILG----FEVEVVPSPKIFGHRNRIDLAITKDG-----IGF 122 Query: 65 DQQTK--SRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDYL 111 ++ K + +D P + + + + + ++ LR+ + + Sbjct: 123 RERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREGKF 182 Query: 112 TTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDER 171 T V+ + + R+++ + +++I ER Sbjct: 183 TEEVMVNFVTKEGNLPDPTNYFDFDSIYWSVNRSKSD-----VSYGDIERFWGKEFIRER 237 Query: 172 LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN 231 L ++ Y NSF Q N+ + ++ ++ +G K +L++Y G G F + LA+ Sbjct: 238 L----DDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEK--ILDMYSGVGTFGIYLAKR 291 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY 291 V + + ++ A+ N+ N++D EF ++ Sbjct: 292 GFNVKGFDSNEFAIEMARRNVEINNVDA-------------------EFEVASDREVSVK 332 Query: 292 QCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTHKVERLALFD 349 +T+ VDPPR+GL K + + I+Y+SCNPET ++++ L ++++ + D Sbjct: 333 GFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRIDEIVALD 390 Query: 350 QFPYTHHMECGVLLT 364 FP+T H+E L Sbjct: 391 MFPHTPHVELVAKLV 405 >UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2 Tax=Aquificaceae RepID=Y257_AQUAE Length = 425 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 82/370 (22%), Positives = 153/370 (41%), Gaps = 33/370 (8%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVP-----EVFRSPVSHYRMRAEFRIWHDGDDL 59 + YE QL K L + + E+ +YR+R +F+I + Sbjct: 80 QIQHLNYEEQLRSKKDILLESLERIGKIKEVPYEGEIPSKKEFNYRVRVQFKIQ----EN 135 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + K + V+ A E IN+L+ + ++ L+ ++Y T + Sbjct: 136 RVGFYRWDVKEVVDVEECLLAHERINELIPHIREVLKVIKDLQE--VHVNYSPTRDEATL 193 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 + + + E + + +G + + ++ +++I + + Sbjct: 194 KFVTITHTDEKLLQNILENVLPEWVVGIGDYGKVGNSLVKRYKVGREHIF----MDVGKW 249 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATE 239 YR +SF Q N + L+ LD ++ K L+L+CG G F++ L+ + + + Sbjct: 250 QYRVSNDSFFQVNYTLWEDFLKEVLDFSESYKKG-LDLHCGVGFFTIPLSEQGNFIEGAD 308 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 299 ++ A+YN N+ DNV A + + G + VD Sbjct: 309 ANPSAIKDAEYNAKINNRDNVIFEEATAFKHLKRRIG--------------EVINLVVVD 354 Query: 300 PPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHH 356 PPRSGL E ++ +I+YISCNP T ++L+ L++ ++++RL L D FP T+H Sbjct: 355 PPRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKILTKGGYELKRLKLIDNFPQTYH 414 Query: 357 MECGVLLTAK 366 +E LL K Sbjct: 415 IESIALLEVK 424 >UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firmicutes RepID=C4Z8S6_EUBR3 Length = 470 Score = 234 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 85/404 (21%), Positives = 160/404 (39%), Gaps = 67/404 (16%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLVPE-------VFRSP-VSHYRMRAEFRIWHDGDD 58 T YE QL K+ +++ +++ E + SP S YR + EF + D Sbjct: 84 QTVPYEKQLDMKLTQVKKLISDAIGTEKESGYEFIGIHGSPKKSEYRNKMEFSFGDEYKD 143 Query: 59 --LYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAG-----------VRNNPVLRHK 104 L + + + + V E ++ A + + LRH Sbjct: 144 GPLALGMHKRGSFYDLVTVSDCQIVDEDFRTILKATLDYFSKNNIPYFHRATHKGYLRHL 203 Query: 105 LFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEA--------------EALRDALRAQNLNV 150 L + T + + +V L+ + + +E + L +N +V Sbjct: 204 LVR---KATKTGEIIVDLVTTTQTEGFNEEELLAGFRYALLTRHYDGRFKGVLHTKNDSV 260 Query: 151 HLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS 210 + + T++ Y E+L + ++ SF Q N+ + E A + G Sbjct: 261 ADVVKNEGTEVLYGDSYFYEKL----LGLKFKITPFSFFQTNSLGAEVLYETAREFILGD 316 Query: 211 KGD------LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIR 264 D + +LY G G + +A V+ EI + +V AA+ N A N +DN + I Sbjct: 317 NKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKENAALNGLDNCKFIA 376 Query: 265 MAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETE-KMVQ-AYPRILYI 322 L+ +D + + I +DPPR G+ + K+++ ++YI Sbjct: 377 GDV---------------LKVLDEIEEKPDYIILDPPRDGIHPKAIGKIIEYGVENMVYI 421 Query: 323 SCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTA 365 SC P +L ++L+ + ++VE++ D FP T+H+E VL++ Sbjct: 422 SCKPTSLARDLQIFMDRGYRVEKICCVDMFPNTYHVETVVLMSK 465 >UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YG03_THEYD Length = 389 Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats. Identities = 74/369 (20%), Positives = 138/369 (37%), Gaps = 72/369 (19%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-PEVF------RSPVSHYRMRAEFRIWHDGDD 58 Y Q+ K + + + PE F +YR RA+F I + Sbjct: 79 FQHVAYSYQIKLKEIVVMEQLKRIGGFENPEDFTNLTLKAESPYNYRNRADFSI----NR 134 Query: 59 LYHIIFD-QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + F + T + V+ + IN+ M +++ G + + + T Sbjct: 135 QNLLGFKIRGTHKFLHVECCHIMHDKINK-MLSLLQGKKPKRKSHNITIRYGINTGT--- 190 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGK 177 + +IE Q + ERL GK Sbjct: 191 --------------------------------WLIQPEMDTVEIETGQKFYYERL--LGK 216 Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLA 237 + I SF Q N ++++ L+ +++ Y G G F++ LA+ ++V+A Sbjct: 217 DFI--ISAPSFFQVNTYQAEKLIQTVLNYITQEDKTVIDAYAGVGTFTVFLAQKAEKVIA 274 Query: 238 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 E ++ + AQ NI + DN+ + EE + + I Sbjct: 275 IEESRSAYKDAQINIK--NFDNITYLCKKTEE---------------ALFESKINGDAIV 317 Query: 298 VDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYT 354 +DPPR G E + + + +++Y+SC P TL ++L+ L + +K++ + D FP T Sbjct: 318 IDPPRVGCMKEVLQAIAEKKIKKVIYVSCEPSTLARDLKYLKEMGYKLKEIQPVDMFPQT 377 Query: 355 HHMECGVLL 363 +H+E L+ Sbjct: 378 YHIENVALM 386 >UniRef50_Q2LSE5 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSE5_SYNAS Length = 429 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 137/371 (36%), Gaps = 58/371 (15%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS----DLVPEVFRSPVSH-YRMRAEFRIWHDGDDL 59 Y QL K ++ V +V SP+ + YR +AEF I L Sbjct: 103 QYQHIAYTHQLEIKKNQVIDAFERIGKHPAPPVRDVIASPMPYAYRGKAEFHISFKSGRL 162 Query: 60 YHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 I + + SRI V E +N+ +TA+ R KL I + Sbjct: 163 PVIGYKEAADSRIVPVSRCAIVDESVNRSLTAL----------RGKLNAISAAGRRGGKK 212 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKE 178 ++ W +A D + L+ R K K+ R P G Sbjct: 213 EERVIL-------WSDTGKAAVDPGVSGGRGG-LVMRPVKEKML--------RAPFQG-- 254 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDRVLA 237 F Q N+A+ M++ + + K +L+ YCG+G FSL LA + ++ Sbjct: 255 ---------FFQANSALVGSMVDSVIRACALTGKETVLDAYCGSGLFSLFLASSARQLFG 305 Query: 238 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 + +V A N++ I N + E + + + Sbjct: 306 VDADGEAVHCAAENLSKEGISNAEFFAGDVGEILR-----------HTFLKTQQSVDIVV 354 Query: 298 VDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYT 354 +DPPR G S+ + +++ RI+YISCNP T +++ L + + L D FP T Sbjct: 355 LDPPRIGCSSDVLEALKSLGPARIIYISCNPATQARDVRRLRDSGYILRDLQPIDMFPQT 414 Query: 355 HHMECGVLLTA 365 H+E LL Sbjct: 415 KHIEIVGLLER 425 >UniRef50_A9WK13 RNA methyltransferase, TrmA family n=3 Tax=Chloroflexus RepID=A9WK13_CHLAA Length = 416 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 142/370 (38%), Gaps = 42/370 (11%) Query: 4 EHLPTEQ--YEAQLAEKVVRLQSMMAPF-----SDLVPEVFRSPVSHYRMRAEFRIWHDG 56 +H P + Y AQ+ K + + + F + P + YR A + Sbjct: 73 DHAPWQHIAYPAQVRYKGIIVADQLRKFLPDITIPIQPVIAAPHPWGYRNSARLHV---- 128 Query: 57 DDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSN 116 D TK+ + + P + + ++ +++ + + Sbjct: 129 DGATLGYHAAGTKTVVDLADDPLLLPALRDTLRSLRRLAFA-GLIKEVTLRASATYGYAA 187 Query: 117 QAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAG 176 + D R L A +A L G + + + ++ + L Sbjct: 188 ARL------SPTPDAERHALWRLATAWKAST--PVLAGVTLEDEPFVGTPFVYDELA--- 236 Query: 177 KEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVL 236 +I+R SF Q N A +M+ D G LL+ Y G G+F+L LAR +D V+ Sbjct: 237 -GVIFRLSLGSFFQVNHAQAERMVAVVRDALAPHGGRLLDAYSGVGSFALPLARCYDEVI 295 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 A E +P+V + + N I NVQ I AAE ++G + Sbjct: 296 AVEAYQPAVEDGRQSAIDNQITNVQFINGAAEHTVAHLSG---------------PFHAV 340 Query: 297 FVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLE-TLSQTHKVERLALFDQFPY 353 +DPPR G + + A P+I+YISC+P + ++L L+ +++ + D FP Sbjct: 341 ILDPPRRGCHPALIEAIIAHAPPQIVYISCHPGLIGRDLAPLLAAGYQITFVQPVDLFPQ 400 Query: 354 THHMECGVLL 363 T H+E + L Sbjct: 401 TPHIETIIHL 410 >UniRef50_Q5R111 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Idiomarina loihiensis RepID=Q5R111_IDILO Length = 450 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 150/383 (39%), Gaps = 48/383 (12%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVP--------EVFRSPVSHYRMRAEFR-IWH 54 +H+ ++ QLA K ++ + F P E S YR R W Sbjct: 93 QHIDEQK---QLAHKRQVVEELFQKFGVFNPQTSSLPWQEPLVSEPMRYRRRVRLATRWL 149 Query: 55 DGDDLYHIIFDQ-QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTT 113 + I F + Q+ + ++ A E++ + + + + V KL I+ + T Sbjct: 150 GKEQKLLIGFREAQSHHIVPIEDCLVADEILLHCVNTLYPLLNTSTVA-SKLGHIEAINT 208 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLP 173 N V+ L + L +AL++ N+ L + D Sbjct: 209 --NTPVILLRITEALPG---DAMQALQEWQTVNKTNIWLQSENDLQPLAGAAMPFD--TS 261 Query: 174 VAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNF 232 + G ++ ++ F Q N +N +M++ A+D K K + + + G GNFSL LAR Sbjct: 262 IDGDKLYFQ--PGDFLQVNGGINQRMVQQAMDWLKPEKTQRVYDFFAGIGNFSLPLARRA 319 Query: 233 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 VLA E + N +N +DN+ + E T + G Sbjct: 320 QSVLAVEGVYRMAEQTRINAESNGMDNLSSLSADLNEITASDLGKP-------------- 365 Query: 293 CETIFVDPPRSGLDSETEKMVQAYP-----RILYISCNPETLCKNLETL-----SQTHKV 342 + +DP R G + + + + P RILY+SC P+TL +++ + +++ Sbjct: 366 ADLWCLDPARPGAEGVVKLLHKLKPEHRPQRILYVSCAPDTLARDIAGMLTESKGCNYRI 425 Query: 343 ERLALFDQFPYTHHMECGVLLTA 365 L+ D FP THH+E V L Sbjct: 426 IGLSTVDMFPQTHHIETMVCLER 448 >UniRef50_A4EB67 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4EB67_9ACTN Length = 482 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 74/401 (18%), Positives = 145/401 (36%), Gaps = 62/401 (15%) Query: 10 QYEAQLAEKVVRLQSMMAPFSD-----LVPEVFR----------SPVSHYRMRAEFRIWH 54 Y+ QLA K ++ + A + + P +R +A Sbjct: 100 PYKKQLAAKQAAMEELFASLCEREDIAVDPIRGMGVTLGDPGKYPAPRGFRHKAATPFAP 159 Query: 55 DGDD-LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLR 102 + + F++ T + V P + Q++ + ++ +LR Sbjct: 160 GKEGAVRCGFFERGTHKIVAVPECPVEAPGARQILNGIAREAERLHIPAFNEDKHLGLLR 219 Query: 103 HKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR------A 156 + + + + T +V+ E+ + AL + N++ GR Sbjct: 220 YAVVRCGWRTDQVMVTLVTAQRDLPHAQEFFEAVAALNPHIVTVAQNIN--GRPGNAILG 277 Query: 157 TKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL- 215 +T+I + + ++L + +F Q N + + A+D +GD+L Sbjct: 278 EETRIVYGAECMRDQL----LGCEFDISPTAFYQTNPQQTELLYQLAIDGMDLQQGDVLM 333 Query: 216 ELYCGNGNFSLALARNFDR------VLATEIAKPSVAAAQYNIAANHIDN-VQIIRMAAE 268 + YCG+G L A+ +L E +A A+ N N + + A Sbjct: 334 DAYCGSGTIGLCAAKAAQDKGVGIMLLGVERNHAGIADARRNAELNGLTRSAWFMADDAT 393 Query: 269 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNP 326 ++ E + + + +DPPR+G E + A RI YISCNP Sbjct: 394 DYILDAADNNE------------RVDVLSIDPPRAGSTPEFLEAACALKPRRITYISCNP 441 Query: 327 ETLCKNL-ETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 T ++L + L +++ ++ D FP+T H E +L + Sbjct: 442 VTQERDLHQLLDGGYRLLKITPVDMFPHTDHTETVAVLERR 482 >UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=36 Tax=Lactobacillales RepID=Y3226_LACPL Length = 481 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 72/388 (18%), Positives = 146/388 (37%), Gaps = 41/388 (10%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMA-------PFSDLVPEVFRSPVSHYRMRAEFRIWHDG 56 L Y AQLA K ++ + D+ P + + YR +A+F++ Sbjct: 109 FELEHLDYPAQLAFKQDLIRQALEKYRPAGYRHYDVRPTIGMTNPYEYRNKAQFQVRLID 168 Query: 57 DDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKL 105 + ++ + + + + + +M ++A + N+ +++ + Sbjct: 169 GHVAAGLYKENSHDLVDLPTCSVQMPATMTVMRQVVAWLEELQVPIYDEEHNSGIVKTIV 228 Query: 106 FQIDYLTTLSNQAVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI 161 + T ++ L +L + ++ + ++ N + +T + Sbjct: 229 VREAAATGEIQLVFITNTPKLPKKHQLLMKIAEKLPMVVSVMQNINAGKTSLIWGDQTTL 288 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCG 220 + I E L +++ +F Q N ++ A + + + L++ Y G Sbjct: 289 LAGKPTITEEL----DGLVFDLSARAFFQLNPQQTKKLYRLAREALNLAPNETLVDAYSG 344 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G L+LA V + +VA A N N I N AE Sbjct: 345 VGTIGLSLADVAKEVRGMDTIPAAVADANANAQRNQITNAHYEVGEAEVLLPQWLA---- 400 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ 338 + + + VDPPR+GLD+ + A +++YISCNP TL ++L+ L++ Sbjct: 401 --------SGFAPDAMVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPSTLAQDLQALTR 452 Query: 339 THKVERLALFDQFPYTHHMECGVLLTAK 366 ++V+ + D FP T E V T + Sbjct: 453 GYQVDYIQSIDMFPQTARCEAVVRFTKR 480 >UniRef50_B0S3A2 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S3A2_FINM2 Length = 403 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 67/367 (18%), Positives = 153/367 (41%), Gaps = 47/367 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVP---EVFRSPVSHYRMRAEFRIWHDGDDLYHI 62 + YE +L K + + + + L ++ + +YR + + ++ ++ Sbjct: 76 MQDITYEKELEIKKNSVLNKLQRIAKLDIKDVDILTNAEYYYRNKVDLKV----ENGKIG 131 Query: 63 IFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSL 122 ++++T + ++ + AS IN+++ + N+ + + + +I + +++ +SL Sbjct: 132 YYNRKTHNLTQISTCKIASTAINEMI----NWLVNHDL--NGVSEIKIRSNYNDEIQISL 185 Query: 123 LYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYR 182 Y + L + L+ + V + + + + +++ ++ + Sbjct: 186 DYIS----------DQLLENLKTVDSIVEIYEKNKNFDLIYKKKQFVDKI----GDLSFI 231 Query: 183 QVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIA 241 SF Q N + + A + D +L+LYCG G ++ + + E+ Sbjct: 232 ISPKSFFQVNKYNTSLLYDTAKQMMNAEANDRILDLYCGIGTTTMYIGN--GNTIGVEVV 289 Query: 242 KPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPP 301 K +V A N N+++++Q I +E + + I VDPP Sbjct: 290 KDAVKDANENKKLNNLESIQFIEEKSENVVGKLT--------------QEHFDVILVDPP 335 Query: 302 RSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHME 358 R G+D + + +++YISC+P TL ++L+ L++ VE + L D F T H+E Sbjct: 336 RKGMDEKVVDAIIKSTAKKLVYISCDPATLARDLKALTENGFGVEDVKLVDMFAKTMHVE 395 Query: 359 CGVLLTA 365 L+ Sbjct: 396 TVALIQK 402 >UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=9 Tax=Thermotogaceae RepID=Y1094_THEMA Length = 439 Score = 231 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 80/385 (20%), Positives = 150/385 (38%), Gaps = 50/385 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP---VSHYRMRAEFRIWHDGDDLYH 61 H +YE QL K L + + V P V HYR + EF L Sbjct: 78 HWMDVKYETQLRYKKEVLIDLFERSNLKVEVEDVEPSDLVFHYRTKMEFHFQGRKLGLK- 136 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDY 110 + + I + A E +++ + V+ VL+H + + + Sbjct: 137 ---KRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETRKGVLKHLVIRYAF 193 Query: 111 LTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI------ELD 164 T +Q +V + + R A+ + +H++ + Sbjct: 194 ST---DQFMVIFVTKTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPYKTLYG 250 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWA-LDVTKGSKGDLLELYCGNGN 223 + I E ++ +F Q N ++ ++++ + +L+LY G G Sbjct: 251 EGVIVEEF----DWERFQIPPTAFFQSNYSITSKLIDHVYREQALQGNEVVLDLYAGIGT 306 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 FS+ + + RV++ E ++ +V A + N N N++ + +F + +G Sbjct: 307 FSVRTSFSAARVISVESSRVAVKAGKANANINSRKNIEYVEQDVLDFLKNYSG------- 359 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ-TH 340 + + I +DPPRSG E K + RI+Y+SC+P TL ++L+ L + + Sbjct: 360 --------RADRIILDPPRSGAGPEVMKEIARLSPERIVYVSCDPSTLVRDLKVLVENGY 411 Query: 341 KVERLALFDQFPYTHHMECGVLLTA 365 + R+ FD FP T+H+E V L Sbjct: 412 SIVRVKPFDMFPQTYHVETAVTLVK 436 >UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n=14 Tax=Cyanobacteria RepID=Y1228_SYNPX Length = 465 Score = 231 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 72/388 (18%), Positives = 142/388 (36%), Gaps = 47/388 (12%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLV----PEVFRSPVSHYRMRAEFRIWH-DGDD 58 +HL AQ K +L M + P + YR R + + D Sbjct: 96 QHLEES---AQRNWKQNQLHQTMLRLGGIDHPQAPALTDQRGLGYRNRGLIPLRRGEDDR 152 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-----------LRHKLFQ 107 L F + + + + P ++ L+ + + + + LRH + Sbjct: 153 LRMGYFRRGSHRIVNLSRCPVLDPRLDALVEPLKQDLDTSGLSADHDLSHSQGLRHLGLR 212 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDY 167 I + T + +++++ ++L R + + + + ++L R T + Sbjct: 213 IGHHT---GEVLITVVSSQQLPALQRLAQQWIERWDPVKGVTLNLQPRRTNQILGATTTV 269 Query: 168 ID--ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK--GDLLELYCGNGN 223 + + + + +F Q N +++ + ++ G +++ YCG G Sbjct: 270 LAGAPTIRELFCGLQLQLSTTTFFQINTPQAERIVACIVSWLSQAELAGPIVDAYCGIGT 329 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNR 282 SL LA V+ EI S+ A+ N AN + + + Sbjct: 330 ISLPLAAQGHHVVGLEINPDSIDQARSNADANGLGARTEFQAGDVANLLKETLA------ 383 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPR--ILYISCNPETLCKNLETLSQ-- 338 C + VDPPR GL+S + + + P + Y+SC+ T ++L+ L Q Sbjct: 384 ---------TCSALVVDPPRRGLESSVIEAILSDPPGLLAYLSCDMATQARDLKRLLQPE 434 Query: 339 -THKVERLALFDQFPYTHHMECGVLLTA 365 +++E+L D FP T H+E L Sbjct: 435 GPYRLEQLQPVDFFPQTTHLENLAFLRR 462 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7MXY6 tRNA (uracil-5-)-methyltransferase n=78 Tax=Prot... 372 e-102 UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethi... 372 e-101 UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clost... 371 e-101 UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacil... 371 e-101 UniRef50_A8GYV6 tRNA (uracil-5-)-methyltransferase n=12 Tax=Gamm... 370 e-101 UniRef50_A5F4M4 tRNA (uracil-5-)-methyltransferase n=202 Tax=Gam... 367 e-100 UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=2... 367 e-100 UniRef50_A0KQR3 tRNA (uracil-5-)-methyltransferase n=93 Tax=Prot... 366 e-100 UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bact... 364 4e-99 UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n... 360 4e-98 UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein ... 358 2e-97 UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clost... 358 2e-97 UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonel... 356 8e-97 UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1... 354 2e-96 UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Therm... 353 6e-96 UniRef50_A6W3C7 tRNA (uracil-5-)-methyltransferase n=9 Tax=Gamma... 353 6e-96 UniRef50_A4BHH3 TRNA (Uracil-5-)-methyltransferase n=1 Tax=Reine... 352 9e-96 UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=... 351 3e-95 UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veill... 350 4e-95 UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n... 349 6e-95 UniRef50_A6DAM4 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Camin... 349 1e-94 UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clost... 348 2e-94 UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacte... 348 2e-94 UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desul... 346 6e-94 UniRef50_A6QBC0 tRNA (uracil-5-)-methyltransferase n=4 Tax=Epsil... 346 7e-94 UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halot... 345 1e-93 UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=... 344 2e-93 UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostri... 343 6e-93 UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacil... 341 3e-92 UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicu... 340 4e-92 UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopisciu... 340 4e-92 UniRef50_B9LA97 tRNA (uracil-5-)-methyltransferase n=1 Tax=Nauti... 340 4e-92 UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammon... 340 6e-92 UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1... 338 2e-91 UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdema... 338 2e-91 UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 ... 338 2e-91 UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=... 338 3e-91 UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 336 7e-91 UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5E... 334 2e-90 UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacte... 333 7e-90 UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostri... 333 8e-90 UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostri... 332 1e-89 UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=... 330 5e-89 UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candi... 329 8e-89 UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=... 329 9e-89 UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 ... 329 1e-88 UniRef50_A8HPV8 tRNA (Uracil-5-)-methyltransferase (Fragment) n=... 329 1e-88 UniRef50_A5EXH9 tRNA (uracil-5-)-methyltransferase n=1 Tax=Diche... 328 1e-88 UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacte... 328 2e-88 UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae Rep... 328 2e-88 UniRef50_A8EWU8 tRNA (uracil-5-)-methyltransferase n=3 Tax=Campy... 328 3e-88 UniRef50_Q31JA4 tRNA (uracil-5-)-methyltransferase n=5 Tax=Prote... 328 3e-88 UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteri... 327 4e-88 UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 327 5e-88 UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepI... 326 6e-88 UniRef50_C6RGK1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Campy... 326 6e-88 UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzym... 326 7e-88 UniRef50_B9D5E5 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Campy... 325 1e-87 UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteri... 325 2e-87 UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus Rep... 324 2e-87 UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotom... 324 3e-87 UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bactero... 324 5e-87 UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bactero... 323 5e-87 UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 323 6e-87 UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desul... 323 7e-87 UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdema... 322 1e-86 UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachl... 322 1e-86 UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 ... 321 3e-86 UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=... 321 3e-86 UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacte... 319 8e-86 UniRef50_A4RUE5 Predicted protein n=8 Tax=cellular organisms Rep... 319 1e-85 UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desul... 318 2e-85 UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moore... 317 3e-85 UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desul... 317 3e-85 UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Therm... 317 3e-85 UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desul... 316 6e-85 UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desul... 316 6e-85 UniRef50_A0RPL1 tRNA (uracil-5-)-methyltransferase n=4 Tax=Campy... 316 9e-85 UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Ta... 316 1e-84 UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embr... 315 2e-84 UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostri... 314 3e-84 UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 314 4e-84 UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=unculture... 314 4e-84 UniRef50_C5EY89 tRNA (Uracil-5-)-methyltransferase n=3 Tax=Helic... 313 5e-84 UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desul... 313 6e-84 UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 ... 313 8e-84 UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 312 8e-84 UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcu... 312 1e-83 UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spiro... 312 2e-83 UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacte... 311 2e-83 UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desul... 311 2e-83 UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptoco... 311 3e-83 UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natra... 311 4e-83 UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttle... 310 5e-83 UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=1... 310 5e-83 UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacil... 310 6e-83 UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 309 7e-83 UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 309 8e-83 UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=S... 309 1e-82 UniRef50_C5ZX30 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Helic... 309 1e-82 UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=1... 309 1e-82 UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevot... 308 2e-82 UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 308 3e-82 UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 307 3e-82 UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella ... 307 5e-82 UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacte... 307 5e-82 UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protei... 306 7e-82 UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=... 306 7e-82 UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10... 306 7e-82 UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillac... 306 1e-81 UniRef50_A9BFH8 RNA methyltransferase, TrmA family n=1 Tax=Petro... 304 4e-81 UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 303 5e-81 UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4R... 303 5e-81 UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodo... 303 6e-81 UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=... 303 6e-81 UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=... 302 9e-81 UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 ... 302 9e-81 UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=P... 302 1e-80 UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n... 302 1e-80 UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desul... 301 2e-80 UniRef50_C8WNQ3 RNA methyltransferase, TrmA family n=2 Tax=Corio... 301 3e-80 UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=... 301 3e-80 UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=... 300 6e-80 UniRef50_A4A8C7 tRNA (Uracil-5-)-methyltransferase n=4 Tax=Gamma... 299 8e-80 UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna R... 299 1e-79 UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 T... 299 1e-79 UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geoba... 299 1e-79 UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 299 1e-79 UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bact... 299 1e-79 UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 298 2e-79 UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 297 3e-79 UniRef50_C1E3C6 Predicted protein n=2 Tax=Micromonas RepID=C1E3C... 297 4e-79 UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synec... 297 6e-79 UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1... 296 6e-79 UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntr... 296 6e-79 UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas ... 296 6e-79 UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyro... 296 7e-79 UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 296 8e-79 UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=De... 296 9e-79 UniRef50_UPI000196C3B9 hypothetical protein CATMIT_02351 n=1 Tax... 295 1e-78 UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopo... 295 1e-78 UniRef50_A1VZH5 tRNA (uracil-5-)-methyltransferase n=17 Tax=Camp... 295 2e-78 UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimo... 295 2e-78 UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA ... 294 3e-78 UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmo... 294 3e-78 UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzym... 294 5e-78 UniRef50_Q7U326 tRNA (uracil-5-)-methyltransferase n=2 Tax=Helic... 293 8e-78 UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdema... 292 1e-77 UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=... 292 1e-77 UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 ... 292 1e-77 UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Rosebur... 291 2e-77 UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase Ru... 291 4e-77 UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Enta... 290 5e-77 UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 290 6e-77 UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 ... 290 6e-77 UniRef50_D2MNL8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 290 7e-77 UniRef50_Q74IG2 Uncharacterized RNA methyltransferase LJ_1606 n=... 290 7e-77 UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelob... 289 9e-77 UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 289 1e-76 UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18... 289 1e-76 UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 289 1e-76 UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81... 288 2e-76 UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachl... 287 6e-76 UniRef50_Q29DJ3 GA17699 n=7 Tax=Drosophila RepID=Q29DJ3_DROPS 286 7e-76 UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22... 286 7e-76 UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacte... 286 8e-76 UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Corio... 286 8e-76 UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclass... 286 9e-76 UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chrom... 286 9e-76 UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 285 2e-75 UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1... 285 2e-75 UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 284 3e-75 UniRef50_C7NAY8 (Uracil-5)-methyltransferase n=3 Tax=Leptotrichi... 284 5e-75 UniRef50_A4EB67 Putative uncharacterized protein n=3 Tax=Collins... 283 6e-75 UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 ... 283 6e-75 UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20... 283 6e-75 UniRef50_B5RIS0 FI05218p (Fragment) n=8 Tax=melanogaster subgrou... 283 6e-75 UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 ... 283 7e-75 UniRef50_C7GZ13 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 283 8e-75 UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25... 283 8e-75 UniRef50_C7MM03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 283 8e-75 UniRef50_B7CCQ1 Putative uncharacterized protein n=1 Tax=Eubacte... 282 1e-74 UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingell... 282 1e-74 UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusob... 282 1e-74 UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desul... 282 2e-74 UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 281 2e-74 UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsoni... 281 2e-74 UniRef50_C8W8Q1 RNA methyltransferase, TrmA family n=1 Tax=Atopo... 281 2e-74 UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolum... 281 3e-74 UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=D... 281 3e-74 UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petro... 281 3e-74 UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=... 281 4e-74 UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacte... 281 4e-74 UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 281 4e-74 UniRef50_Q72VP7 Uncharacterized RNA methyltransferase LIC_10249 ... 280 7e-74 UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12... 280 7e-74 UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase ... 279 8e-74 UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=N... 279 1e-73 UniRef50_D0J1B5 RNA methyltransferase, TrmA family n=1 Tax=Comam... 279 1e-73 UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n... 279 1e-73 UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1... 278 3e-73 UniRef50_C3XVW9 Putative uncharacterized protein n=1 Tax=Branchi... 277 3e-73 UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzym... 277 4e-73 UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n... 277 5e-73 UniRef50_B3S5B9 Putative uncharacterized protein n=1 Tax=Trichop... 277 5e-73 UniRef50_C4G0G8 Putative uncharacterized protein n=1 Tax=Abiotro... 276 6e-73 UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicy... 276 7e-73 UniRef50_B0S9K0 tRNA (Uracil-5-)-methyltransferase n=2 Tax=Lepto... 276 7e-73 UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marin... 276 8e-73 UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 ... 276 8e-73 UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenel... 276 9e-73 UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 276 1e-72 UniRef50_A1SSB8 23S rRNA (uracil-5-)-methyltransferase rumA n=2 ... 275 1e-72 UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19... 274 3e-72 UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 ... 274 3e-72 UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Rosei... 274 3e-72 UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydro... 274 4e-72 UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14... 274 4e-72 UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 273 6e-72 UniRef50_C5CUM3 RNA methyltransferase, TrmA family n=1 Tax=Vario... 273 6e-72 UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 273 7e-72 UniRef50_Q2L016 23S rRNA (uracil-5-)-methyltransferase rumA n=58... 273 8e-72 UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collins... 273 9e-72 UniRef50_A9WK13 RNA methyltransferase, TrmA family n=3 Tax=Chlor... 272 9e-72 UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 ... 272 1e-71 UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(... 272 1e-71 UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firm... 272 2e-71 UniRef50_A2BEG2 Novel protein (Zgc:55519) n=2 Tax=Danio rerio Re... 272 2e-71 UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780... 271 2e-71 UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6... 271 2e-71 UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protei... 271 3e-71 UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Achol... 271 3e-71 UniRef50_A5CXB2 RNA methyltransferase, TrmA family n=2 Tax=Gamma... 271 3e-71 UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 T... 270 5e-71 UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimo... 270 6e-71 UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococ... 270 6e-71 UniRef50_Q6ANA2 Related to RNA-methyltransferase n=1 Tax=Desulfo... 270 7e-71 UniRef50_Q17NM7 RNA m5u methyltransferase n=7 Tax=Diptera RepID=... 269 9e-71 UniRef50_B7PPI6 tRNA uracil-5-methyltransferase, putative (Fragm... 269 1e-70 UniRef50_D0NAM0 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Phyto... 269 1e-70 UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2... 269 2e-70 UniRef50_B9CLW5 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 ... 267 3e-70 UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaer... 267 5e-70 UniRef50_C2L0H1 TrmA family RNA methyltransferase n=1 Tax=Oribac... 267 6e-70 UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=13... 266 7e-70 UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCM... 266 1e-69 UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 ... 265 1e-69 UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusob... 265 2e-69 UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinel... 265 2e-69 UniRef50_D2V0R2 S-adenosylmethionine-dependent methyltransferase... 265 2e-69 Sequences not found previously or not previously below threshold: >UniRef50_A7MXY6 tRNA (uracil-5-)-methyltransferase n=78 Tax=Proteobacteria RepID=TRMA_VIBHB Length = 369 Score = 372 bits (956), Expect = e-102, Method: Composition-based stats. Identities = 231/361 (63%), Positives = 288/361 (79%), Gaps = 2/361 (0%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQ 67 ++Y+ QLAEKV RL M AP++ EVF SP HYRMRAEFR+WH+G+DLY+I+F+Q+ Sbjct: 8 PQRYQEQLAEKVERLNDMFAPYNVPELEVFESPEQHYRMRAEFRVWHEGEDLYYIMFNQE 67 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK 127 T+ + RVD FPAAS LIN LM ++ +++N LR KLFQ+D+L+TLS + +VSLLYH++ Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLVEAMKDNESLRRKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 128 LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENS 187 LD+EW + A+AL+ L + N+++IGRA K KI LD+DY+ E+L V G+ IY+QVENS Sbjct: 128 LDEEWIENAKALKQRLNDEGFNLNIIGRARKMKIVLDRDYVIEKLDVNGQSYIYQQVENS 187 Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAA 247 FTQPN + +MLEWA+D T+ S GDLLELYCGNGNFSLALA+NFDRVLATE+AKPSV + Sbjct: 188 FTQPNGKVAEKMLEWAVDCTQESTGDLLELYCGNGNFSLALAQNFDRVLATELAKPSVVS 247 Query: 248 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL--QGIDLKSYQCETIFVDPPRSGL 305 AQYNIAAN IDNVQI+R++AEEFTQA+ G REF RL G+DLKSY C TIFVDPPRSG+ Sbjct: 248 AQYNIAANEIDNVQILRLSAEEFTQAIEGKREFRRLQDAGVDLKSYNCNTIFVDPPRSGM 307 Query: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 D +T KMVQ Y RI+YISCNPETL +NL+ L +TH V R ALFDQFPYTHHME GVLL Sbjct: 308 DVDTCKMVQGYERIMYISCNPETLKENLDILCETHNVTRFALFDQFPYTHHMEAGVLLER 367 Query: 366 K 366 K Sbjct: 368 K 368 >UniRef50_C0GCA6 RNA methyltransferase, TrmA family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCA6_9FIRM Length = 455 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 154/388 (39%), Gaps = 45/388 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV----FRSPVSHYRMRAEFRIWHDGDDLY 60 L QYE QL K + + + V YR +A+ + + + Sbjct: 87 QLQHLQYEEQLKLKQNIVSDTLKRIGGIDIPVLATMGMQDPWRYRNKAQVPVGLENGTVR 146 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQID 109 +++++ + I + + ++ + ++ + ++RH L + Sbjct: 147 AGFYEKRSHNIIDLKCCHIQHPANDNVVHTVRNILQQLSVPVYREREHKGLVRHILARTS 206 Query: 110 YLTTLSNQAVVSLLYHKKLDDEWRQEAEALRD-------ALRAQNLNVHLIGRATKTKIE 162 + T + +V+++ + + + ++ + L+D ++ N + Sbjct: 207 FTTE---EVLVAIVTNGRQLPKKQEVVQQLKDSIPNLCGIVQNINTRKGNTILGNEELTL 263 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGN 221 L + ++ E+L + + SF Q N + AL+ S + + +LYCG Sbjct: 264 LGRPWLREKL----GNLHFHVSARSFFQVNPLQTEVLYNKALEYANLSGTETVFDLYCGI 319 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G SL LAR +V+ E + +V A+ N N+I N + AE + Sbjct: 320 GTISLFLARKAAKVVGVESVEAAVHDARENANVNNIKNAEFHTGTAETVVPRLF------ 373 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQ- 338 + Y + + VDPPR G D + + A RI+Y+SCNP TL ++L+ L Q Sbjct: 374 ------KQGYHADVVVVDPPRKGCDEKLLATIAAMRPQRIVYVSCNPATLARDLKYLQQN 427 Query: 339 THKVERLALFDQFPYTHHMECGVLLTAK 366 + D FP+T H+E VLL K Sbjct: 428 GYNPIEAQPVDMFPHTSHVETVVLLERK 455 >UniRef50_A3DG93 RNA methyltransferase, TrmA family n=4 Tax=Clostridium RepID=A3DG93_CLOTH Length = 453 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 85/388 (21%), Positives = 158/388 (40%), Gaps = 46/388 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVP-----EVFRSPVSHYRMRAEFRIWHDGDDLY 60 L YEA L K ++ + L V +YR +A++ I D + Sbjct: 85 LQHMNYEASLRFKTNVVRESIRRIGGLENVVVHDTVGMEQPVNYRNKAQYPIGRYKDGIR 144 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQID 109 + +++ I + + +++ + + N ++RH + ++ Sbjct: 145 AGFYAKRSHEIIDCATCTIQHSVSDRVRAVVKEYIEKNNISTYDEITGEGLVRHIMTRVG 204 Query: 110 YLTTLSNQAVVSLLYH-------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIE 162 + T + +V L+ + KKL D +E ++ + N + + + Sbjct: 205 FKT---GEVMVVLVINGRNIPSQKKLVDRLVKEIPEIKSVVLNVNTKRTNVILGDENIVV 261 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGN 221 +D I + + E + SF Q N + ALD + + + + +LYCG Sbjct: 262 YGRDTITDYI----GEFKFNISPLSFFQVNPVQTEVLYRKALDYAQLTGKETVFDLYCGI 317 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G SL L++ R+ E+ + +V A N N ++N + I AE+ M Sbjct: 318 GTISLFLSKKAKRIYGVEVVEAAVKDAWENAKVNGVENAEFIVGEAEKVIPEMYE----- 372 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ- 338 K + + + VDPPR G D K + RI+Y+SCNP TL ++L+ L++ Sbjct: 373 -------KGVRADVVVVDPPRKGCDEAVLKTLVDMKPERIVYVSCNPATLARDLKYLAEG 425 Query: 339 THKVERLALFDQFPYTHHMECGVLLTAK 366 +V + D FP+T+H+EC L+ K Sbjct: 426 GFEVREVQPVDMFPWTYHVECVALIEKK 453 >UniRef50_C6CV49 RNA methyltransferase, TrmA family n=5 Tax=Bacilli RepID=C6CV49_PAESJ Length = 465 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 86/400 (21%), Positives = 151/400 (37%), Gaps = 57/400 (14%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV--------------PEVFRSPVSHYRMRAEF 50 L Y AQL K + + L P V + YR +A+ Sbjct: 85 QLQHMDYAAQLNWKRQHVVDALERIGKLQIAGEGEEASGITVHPTVGMNDPWRYRNKAQV 144 Query: 51 RIWHDGD--DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN----------- 97 + +L + + + I D + ++++ + A R Sbjct: 145 PVGASAGAGELIAGFYAKGSHRIIDTDQCHIQHDRNDEVVRIVKAIGRELGVSAYDEESG 204 Query: 98 NPVLRHKLFQIDYLTTLSNQAVVSLLYH-KKLD------DEWRQEAEALRDALRAQNLNV 150 +LRH + + +++ + +V L+ + +KL + R ++ ++ N Sbjct: 205 KGLLRHVMTRTGFVS---GEIMVVLVTNGRKLPQAELWVERIRAALPEVKSIVQNVNTRD 261 Query: 151 HLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS 210 + +TK+ + I + L + + SF Q N + I++ A+D + + Sbjct: 262 TNVIFGDETKVLWGSEVIYDEL----DGIRFAISARSFYQVNPSQTIELYRTAVDYAQLT 317 Query: 211 KGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE 269 + +++ YCG G SL LAR RV EI ++ A+ N N I N AE Sbjct: 318 GKESVIDAYCGIGTISLFLARKAGRVYGVEIVPEAIEDAKRNAELNGISNASFEAGPAEV 377 Query: 270 FTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPE 327 + + I VDPPR G D + R++Y+SCNP Sbjct: 378 VIPRWRE------------EGIIPDVIVVDPPRKGCDPALLDTILKMQPERVVYVSCNPS 425 Query: 328 TLCKNLETLS-QTHKVERLALFDQFPYTHHMECGVLLTAK 366 TL ++L TL +K + D FP+T H+EC V + K Sbjct: 426 TLARDLRTLEDGGYKTVEVTPVDMFPWTSHVECVVWMVRK 465 >UniRef50_A8GYV6 tRNA (uracil-5-)-methyltransferase n=12 Tax=Gammaproteobacteria RepID=TRMA_SHEPA Length = 365 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 215/361 (59%), Positives = 278/361 (77%), Gaps = 1/361 (0%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 + Y+ QL K V+L+ + A F E F S +HYRMRAEFR+WH+G+DLY+ +FD Sbjct: 6 MDPTTYDVQLEAKCVKLKQLFADFDTPELETFSSEPAHYRMRAEFRVWHEGEDLYYYMFD 65 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 ++ S++R D F ASELIN++M A++ ++ N +LRH+LFQID+L+TLS + +VSLLYH Sbjct: 66 KELNSKVRCDQFLPASELINKMMPALVELLKPNTILRHRLFQIDFLSTLSGEILVSLLYH 125 Query: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVE 185 K+LD EW Q+A+ L+ L Q NV+LIGRA K KI D+D++ E L VAGK++ Y Q+E Sbjct: 126 KQLDSEWEQQAKILKQTLSTQ-FNVNLIGRARKQKIIFDKDFVVESLNVAGKQLQYHQIE 184 Query: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245 NSFTQPN ++++MLEWA+D+TK S GDLLELYCGNGNFS+ALA+NF+RVLATE+AKPSV Sbjct: 185 NSFTQPNGKVSVKMLEWAIDITKNSSGDLLELYCGNGNFSIALAQNFERVLATELAKPSV 244 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 +AQYNI N ++N+QIIRM+AE+FT+AM R F RL+GIDL SY C TIFVDPPR+GL Sbjct: 245 ESAQYNIKVNQVENLQIIRMSAEDFTEAMAKKRSFRRLEGIDLDSYNCNTIFVDPPRAGL 304 Query: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 D++T K+VQ Y RI+YISCNP TL NL LS+THK+ R ALFDQFPYT HME GV L Sbjct: 305 DADTVKLVQGYERIVYISCNPNTLIDNLAELSKTHKITRFALFDQFPYTDHMESGVFLEK 364 Query: 366 K 366 K Sbjct: 365 K 365 >UniRef50_A5F4M4 tRNA (uracil-5-)-methyltransferase n=202 Tax=Gammaproteobacteria RepID=TRMA_VIBC3 Length = 369 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 233/361 (64%), Positives = 293/361 (81%), Gaps = 2/361 (0%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQ 67 E Y+AQLA+K+ RL++M +S EVF SPV++YRMRAEFRIWH+GDD+Y+I+F+Q+ Sbjct: 8 PELYQAQLADKIARLKAMFVDYSMPELEVFESPVANYRMRAEFRIWHEGDDMYYIMFNQE 67 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK 127 T+ + RVD FPAAS LIN LM ++ ++ +P+LRHKLFQ+D+L+TLS + +VSLLYH++ Sbjct: 68 TREKYRVDQFPAASRLINDLMPLLMDAMKGSPILRHKLFQVDFLSTLSGEILVSLLYHRQ 127 Query: 128 LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENS 187 L +EW A+AL+ L + N++LIGRA K K+ LD+DY+ E L V G+ +Y+QVENS Sbjct: 128 LSEEWITAAQALKQRLNDEGFNLNLIGRARKMKVVLDRDYVVENLQVNGQPYVYKQVENS 187 Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAA 247 FTQPNA + +MLEWA+D T+ SKGDLLELYCGNGNFSLALA+NF+RVLATE+AKPSV A Sbjct: 188 FTQPNAKVAEKMLEWAVDCTQESKGDLLELYCGNGNFSLALAQNFERVLATELAKPSVEA 247 Query: 248 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL--QGIDLKSYQCETIFVDPPRSGL 305 AQ+NIAAN I NVQIIRM+AEEFTQAM G REFNRL G+DL+SY+C TIFVDPPRSG+ Sbjct: 248 AQFNIAANQIGNVQIIRMSAEEFTQAMEGKREFNRLKDAGVDLQSYRCNTIFVDPPRSGM 307 Query: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 D +T KMVQ Y RILYISCNPETL +NL+ L +TH+V R ALFDQFPYTHHME GV+L Sbjct: 308 DIDTCKMVQGYERILYISCNPETLQENLQVLGETHQVVRFALFDQFPYTHHMEAGVMLER 367 Query: 366 K 366 K Sbjct: 368 K 368 >UniRef50_Q8ES75 Uncharacterized RNA methyltransferase OB0768 n=23 Tax=Firmicutes RepID=Y768_OCEIH Length = 459 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 158/387 (40%), Gaps = 41/387 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y+ QL K ++ ++M + L P + SHYR + + + ++ Sbjct: 86 QLQHMSYDLQLQMKQGQVHNVMKKVAHLDQVPVHPILGMEEPSHYRNKVQIPVGEKNGEV 145 Query: 60 YHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPV-----------LRHKLFQ 107 + +++ + D+ E IN+++ + + LRH + + Sbjct: 146 IVGFYQKRSHRILQNQDTCHIQDEAINEVLPFTRQLMNKYGIQAYDEKSHRGQLRHIMVR 205 Query: 108 IDYLTTLSNQAVVSLLYHKKLDD----EWRQEAEALRDALRAQNLNVHLIGRATKTKIEL 163 + + T V+ D E ++ ++ ++ N + KTK+ Sbjct: 206 VGHYTKDIMIVFVTKTSKFPEKDRIIKELTEQFPQVKSIVQNVNDQRTNVVLGKKTKVLW 265 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNG 222 ++YI +++ ++ + SF Q N + + AL+ K D+ ++ YCG G Sbjct: 266 GENYIYDKI----GDLTFAISPKSFFQVNPVQTKVLYDKALEYANIDKDDVVIDAYCGIG 321 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 + SL LA+ +V E+ ++ A+ N N ++NV+ AE+ Sbjct: 322 SISLFLAQKAKKVYGIEVVPEAIEDAKMNAEINGMNNVEFSVGQAEKVMPKWKE------ 375 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKM--VQAYPRILYISCNPETLCKNLETLS-QT 339 + + I VDPPR G D + + RI+Y+SCNP TL ++L L Sbjct: 376 ------QGLDPDVIVVDPPRKGCDVDFLEAMIAMKPKRIVYVSCNPSTLARDLRILEDGG 429 Query: 340 HKVERLALFDQFPYTHHMECGVLLTAK 366 + +++ D FP T+H+EC LT K Sbjct: 430 FETKQVQPVDMFPSTNHVECVAELTLK 456 >UniRef50_A0KQR3 tRNA (uracil-5-)-methyltransferase n=93 Tax=Proteobacteria RepID=TRMA_AERHH Length = 377 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 234/359 (65%), Positives = 280/359 (77%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQ 67 Y+AQL EK RL + A F+ EV SP HYRMRAEFRIWHDGDDLYH ++ Sbjct: 17 PADYQAQLDEKRERLCGLFADFTLPALEVHASPAEHYRMRAEFRIWHDGDDLYHCMYAPA 76 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK 127 TK IRVD FP AS LINQLM ++ G+R +PVLR KLFQIDYL+T S Q VSLLYH+K Sbjct: 77 TKEIIRVDQFPTASRLINQLMPVLLEGLRPHPVLRRKLFQIDYLSTQSGQICVSLLYHRK 136 Query: 128 LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENS 187 L+ EW+Q AEAL+ LRA+ + LIGRA K KI L ++++ ERL V G++++Y+QVENS Sbjct: 137 LESEWQQAAEALQADLRAKGFELQLIGRAHKQKICLGEEFVIERLTVQGRQLVYKQVENS 196 Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAA 247 FTQPNAA+N QML WALDVTKGS+GDLLELYCGNGNFS+ALA+NF +VLATEIAKPSV + Sbjct: 197 FTQPNAAINEQMLGWALDVTKGSEGDLLELYCGNGNFSIALAQNFRKVLATEIAKPSVDS 256 Query: 248 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDS 307 AQ+NIAAN +DN+ I+RM+AEEFT AM G REFNRL+G+DL +YQC TIFVDPPR+GLD Sbjct: 257 AQFNIAANGVDNLIILRMSAEEFTMAMRGEREFNRLKGVDLGAYQCNTIFVDPPRAGLDD 316 Query: 308 ETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 T K+VQ Y ILYISCNPETL N+ L +TH++ R ALFDQFP+THHME GV L K Sbjct: 317 ATVKLVQDYDNILYISCNPETLQANMAVLGETHEIARFALFDQFPWTHHMEAGVYLKRK 375 >UniRef50_A9KR80 RNA methyltransferase, TrmA family n=40 Tax=Bacteria RepID=A9KR80_CLOPH Length = 468 Score = 364 bits (934), Expect = 4e-99, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 158/391 (40%), Gaps = 41/391 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 + YE QL K ++ + + + P V +YR +A+F + D Sbjct: 87 QIQQLSYEEQLRYKQNKVLNCLKRIGGIENPPMEPIVGMENPYYYRNKAQFPVGKRTDGE 146 Query: 60 Y-HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQ 107 + +T S I E L+ + ++ + ++RH L + Sbjct: 147 VVIGFYAGRTHSIIDTAKCHIGDESTEPLIACIRNFLKQENISIYDEESHQGLVRHILLR 206 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRA----QNLNVHLIGRATKTKIEL 163 + + T + ++ ++ + K + + + + ++ L KT + L Sbjct: 207 VGFTTK---ELMICVVINGKELPASDKLIKQILACPNLPKDFRVTSICLNKNTKKTNVIL 263 Query: 164 DQD----YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELY 218 ++ Y + ++ Y+ SF Q N ++ E ALD T + + + +LY Sbjct: 264 GEEIIPLYGPTYITDYIGDIKYQISPLSFYQVNPVQTKKLYELALDYTDLTGNELVWDLY 323 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 CG G SL LA+ V EI ++ A+ N N I+N + AAEE Sbjct: 324 CGIGTISLFLAQKAKMVYGVEIIPQAIEDAKSNAKLNDINNAEFFVGAAEEVLP------ 377 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL 336 + + + I VDPPR G D + + RI+Y+SC+P TL ++L+ L Sbjct: 378 ---KQYQLSGGKIYADVIVVDPPRKGCDESLLETIVAMEPKRIVYVSCDPATLARDLKYL 434 Query: 337 -SQTHKVERLALFDQFPYTHHMECGVLLTAK 366 + ++++ DQFP++ H+E LLT + Sbjct: 435 IEHGYDLKKVRPVDQFPHSVHVESVTLLTRR 465 >UniRef50_Q73EJ5 Uncharacterized RNA methyltransferase BCE_0363 n=176 Tax=Firmicutes RepID=Y363_BACC1 Length = 460 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 153/388 (39%), Gaps = 46/388 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L YE QL K +++ +M + P + YR +A+ I L Sbjct: 89 QLQHLTYEGQLQAKEKQVRDVMQRIGGLSDVPVHPVLGMKNPWVYRNKAQVPIGEREGGL 148 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-----------LRHKLFQI 108 + Q T I ++S +E + L+ + + + LRH + + Sbjct: 149 VAGFYRQGTHDIINMESCLIQAEENDTLIQEVKRICEKHGISAYNEERNKGTLRHVMARY 208 Query: 109 DYLTTLSNQAVVSLLYH-------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI 161 +T + ++ + K + +E + ++ ++ N + KT + Sbjct: 209 GQVT---GEIMLVFITRTAELPNKKAIIEEIATKFPEVKSIVQNVNPKRTNVIFGDKTTV 265 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKG-SKGDLLELYCG 220 +YI + ++ + SF Q N + + L+ K +++ YCG Sbjct: 266 LYGSEYIYD----FIGDIKFAISARSFYQVNPEQTKVLYDKTLEYAKLDGNETVIDAYCG 321 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G+ SL LA+ +V EI ++ A+ N A N++ N + AE Sbjct: 322 IGSISLFLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGVGEAEVVIPKWY----- 376 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ 338 + +T+ VDPPR G D + R++Y+SCNP TL ++L+ L + Sbjct: 377 -------KEGVIADTMVVDPPRKGCDEALLNTIIDMKPKRVVYVSCNPATLARDLKVLEE 429 Query: 339 -THKVERLALFDQFPYTHHMECGVLLTA 365 +K + + D FP+T H+EC VL++ Sbjct: 430 GGYKTQEVQPVDMFPHTTHVECVVLMSR 457 >UniRef50_C4ZI04 Hypothetical RNA methyltransferase-like protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZI04_EUBR3 Length = 493 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 84/413 (20%), Positives = 158/413 (38%), Gaps = 55/413 (13%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS---------DLVPEVFRSPVSHYRMRAEFRIWHD 55 + YE QL K ++++ + + P V YR +A+F + +D Sbjct: 81 QIQALSYEKQLEFKNNKVRNNLMRIGGFSEAKLDSKMQPPVGTDNPYRYRNKAQFPVGYD 140 Query: 56 GDDLYH-IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRH 103 D + ++ + I V+ +++ + + + ++RH Sbjct: 141 RDGNIVTGFYASRSHNIIPVEDCRLGVPQNKEILDIIKEWMNECGITPYDENTHKGLVRH 200 Query: 104 KLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQE---AEALRDAL----------RAQNLNV 150 L + + + Q +V L+ + + R+ A+ L + L N Sbjct: 201 VLIRYGFTSK---QIMVCLVINGDSLEAKRRAGNAADILCERLSKIDGMTSISYNINKEN 257 Query: 151 HLIGRATKTKIELDQDYIDERLPV--------AGKEMIYRQVENSFTQPNAAMNIQMLEW 202 + KT + YI++ + + G + Y+ SF Q N ++ Sbjct: 258 TNVILGKKTVCIWGRPYIEDTIHLLSYPDFTPQGTGITYQISPQSFYQVNPKQTEKLYST 317 Query: 203 ALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQ 261 AL + + + +LYCG G SL L++ +V EI ++ A+ N N I N Q Sbjct: 318 ALAFAGLTGNENVWDLYCGIGTISLFLSQKAKQVYGVEIVPQAIEDAKNNAKLNGITNAQ 377 Query: 262 IIRMAAEEFTQAMNGVREFNRLQGID------LKSYQCETIFVDPPRSGLDSETEK--MV 313 AE+ + D + + I VDPPR G D + + Sbjct: 378 FFVGKAEDVLPQFYENAKKKENITDDTASTGHTDMLRPDVIVVDPPRKGCDEKCLDTMLA 437 Query: 314 QAYPRILYISCNPETLCKNLETLS-QTHKVERLALFDQFPYTHHMECGVLLTA 365 + RI+Y+SC+ TL ++L+ L + +++ + FDQF +T H+E LL Sbjct: 438 MSPERIVYVSCDSATLARDLKILCEEKYELMKWQAFDQFSHTTHVESICLLER 490 >UniRef50_D2RLZ0 RNA methyltransferase, TrmA family n=3 Tax=Clostridiales RepID=D2RLZ0_ACIFE Length = 458 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 76/390 (19%), Positives = 148/390 (37%), Gaps = 47/390 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDD- 58 L Y AQLA K + M + + HYR + + + Sbjct: 88 QLQHLSYPAQLALKRQTVVDAMERIGHFTKLSVQETLGAEDPWHYRNKMQVPAAQGRNHT 147 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQ 107 L + Q T I V + N+++ + + + ++RH + + Sbjct: 148 LAIGCYAQGTHRVIDVKDCLIQQQANNRIVQVVRSWMEKYRIPALEEDARRGIVRHIMGR 207 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDA-------LRAQNLNVHLIGRATKTK 160 + + + + L+ ++ + LR ++ N + K K Sbjct: 208 VGV---QTGEVMAVLVTNEPQVPHLKDLTALLRQEIPGFTTLVQNLNTRHTNVIMGPKNK 264 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYC 219 + I +RL + + +SF Q N ++ E AL + + +++ YC Sbjct: 265 VIWGPGVIHDRL----GKFTFTISPHSFFQVNTLQAEKLYETALQYAALTGKEKVIDAYC 320 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G +L LA+ R L EI +P++ A+ N N + NV + A + + Sbjct: 321 GTGTITLFLAQKAKRALGIEIVEPAIRDARQNARDNQVSNVDFLCGDAAKEMPELVR--- 377 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETL- 336 + + + + +DPPR+G + + + R++Y+SCNP +L ++ L Sbjct: 378 ---------QGSRPDVVVLDPPRAGCEQRVLEAIAKVRPQRVVYVSCNPASLARDAAILR 428 Query: 337 SQTHKVERLALFDQFPYTHHMECGVLLTAK 366 + V ++ D FP+T H+E LLT + Sbjct: 429 DKGFVVRKVQPVDMFPHTSHVETVCLLTLR 458 >UniRef50_C4FXL7 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FXL7_9FIRM Length = 499 Score = 356 bits (914), Expect = 8e-97, Method: Composition-based stats. Identities = 87/386 (22%), Positives = 148/386 (38%), Gaps = 41/386 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD------LVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y AQL K ++ + + + P YR +A+ + L Sbjct: 129 LQHMAYPAQLKAKQALVKQVFSRLGKFPESLEVRPTYGMDHPWQYRNKAQIPVRTVKGQL 188 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVL------RHKLFQIDY--L 111 F + + + V++F I+Q + +R R + Sbjct: 189 ETGFFRKNSHQLVPVENFHIQDPAIDQAILVTRDILRQLGYSAYDEESRKGQIRHIIVKR 248 Query: 112 TTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQN-------LNVHLIGRATKTKIELD 164 S Q ++ L+ + K + +AL A+ + + ++ Sbjct: 249 GHYSGQVMLILVVNGKGLPAEDKLIKALTKAIPNLVSLVLNSHTQANNVIMGPTNRLLWG 308 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGN 223 Q +++ + + +SF Q N + +AL+ S + +L+ YCG G Sbjct: 309 QPVYQDQM----LGLDFSISPHSFYQVNTPQAEALYRYALEAADLSGSETVLDAYCGIGT 364 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 SLALAR +V A EI ++ A+ N AN + NV AEE A Sbjct: 365 ISLALARQAGQVYAMEIVPEAIDMARANAEANGLSNVTFQAGKAEEVLPAWQA------- 417 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-TH 340 + + VDPPR GLD E K + A +I+Y+SCNP T ++ + L+Q + Sbjct: 418 -----EGIHFDVAVVDPPRKGLDPEFVKTLIELAPDKIVYVSCNPATCARDCQLLAQAGY 472 Query: 341 KVERLALFDQFPYTHHMECGVLLTAK 366 +++ + D FP T H+E LL K Sbjct: 473 ELQWVQPVDLFPKTAHIEVVGLLERK 498 >UniRef50_Q71YR7 Uncharacterized RNA methyltransferase LMOf2365_1776 n=56 Tax=Firmicutes RepID=Y1776_LISMF Length = 453 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 72/383 (18%), Positives = 147/383 (38%), Gaps = 44/383 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVF----RSPVSHYRMRAEFRIWHDGDDLYH 61 L Y+ QL K +++ M L EV YR +++ + L Sbjct: 87 LQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMENPWRYRNKSQVPVGFVNGKLTA 146 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-----------LRHKLFQIDY 110 + +++ + I + + +E + + + +RH + + Sbjct: 147 GFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTR--- 203 Query: 111 LTTLSNQAVVSLLYHKKLDDEWRQEAEALRD------ALRAQNLNVHLIGRATKTKIELD 164 + Q ++ L+ K+ + L + ++ N + + +TK Sbjct: 204 FAHTTGQLMIVLVTTKERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWG 263 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGN 223 +D I++ + + + SF Q N + + A+D + + + +++ YCG G+ Sbjct: 264 KDIIEDTI----HGIRFAISARSFYQVNPIQTEVLYQQAIDAAELTGEETVIDAYCGIGS 319 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 SL LA+ V EI ++ A+ N N + N AEE A Sbjct: 320 ISLCLAKKAKHVYGVEIVDQAIQDARANAELNELANTTFETGKAEEVIPAWY-------- 371 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLS-QTH 340 + + VDPPR G D + + + +++Y+SCNP TL ++++ L+ + Sbjct: 372 ----KAGIVADVLVVDPPRKGCDEKLLETILAMKPKKVVYVSCNPGTLARDMKILTDGGY 427 Query: 341 KVERLALFDQFPYTHHMECGVLL 363 +++ D FP T H+E +L Sbjct: 428 VAKKVQPVDMFPMTTHIEAVTVL 450 >UniRef50_C6PDX4 RNA methyltransferase, TrmA family n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDX4_CLOTS Length = 452 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 82/383 (21%), Positives = 156/383 (40%), Gaps = 39/383 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV----FRSPVSHYRMRAEFRIWHDGDDLYH 61 L Y+ QL K + ++ + V +YR +AE+ + + ++ Sbjct: 85 LQHLSYKGQLEFKKQVVDDSLSRIGKINTIVYDTIGMDNPLYYRDKAEYPVGIEDGNIKS 144 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQIDY 110 + ++ + I +DS S+ + M + N N +LR+ + ++ + Sbjct: 145 GFYASKSHNIIAIDSCMIQSDYSIEAMKTVREWANNYKISIFDEKSGNGLLRYIITKVGF 204 Query: 111 LTTLSNQAVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD 166 T +V + Y +L + ++ + L+ + N + + ++ + Sbjct: 205 STKEVMVILVINGIDIPYKDELINTLKKNIKELKSVVLNINKSRSRLVMGSENIVIYGDG 264 Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFS 225 YI + + + + SF Q N + E AL+ + ++++YCG G S Sbjct: 265 YITDYI----GDKKFEISPLSFFQVNPIQTKVLYEKALEYADLKGDEIVIDVYCGIGTIS 320 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 + A+ V E+ +V A+ N A N I+N I AE + + Sbjct: 321 IFFAKYVKHVYGIEVVSDAVEDAKRNAAINGINNADFIAGKAEHVMKRLY---------- 370 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLS-QTHKV 342 + + I +DPPR GLD + +I+YISCNP TL ++L +K Sbjct: 371 --KEGLMPDIIILDPPRRGLDKDVVDECVKMNPQKIIYISCNPTTLARDLRIFEDNGYKT 428 Query: 343 ERLALFDQFPYTHHMECGVLLTA 365 E++ D FPYT+H+EC VL++ Sbjct: 429 EKVQPVDMFPYTYHVECVVLMSR 451 >UniRef50_A6W3C7 tRNA (uracil-5-)-methyltransferase n=9 Tax=Gammaproteobacteria RepID=TRMA_MARMS Length = 366 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 195/368 (52%), Positives = 254/368 (69%), Gaps = 6/368 (1%) Query: 1 MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 M P+ + E YE QL +K L +MA S EVF S +HYRMRAEFRIWHDGDDLY Sbjct: 1 MRPDQIQPEMYEKQLQDKQAELAKLMATLSLPEMEVFASQPTHYRMRAEFRIWHDGDDLY 60 Query: 61 HIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + +FD ++ IR D F AAS LIN+LM ++ VR+ PVLR+KLFQ+D+LTT + +A+ Sbjct: 61 YAMFDSADPRTPIRTDQFLAASRLINELMPKLLDAVRDVPVLRYKLFQVDFLTTTTGEAL 120 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 +SLLYHK +D EW + L +A A H IGR+ K K + +D++ E L V G++ Sbjct: 121 ISLLYHKPIDAEWNAAVQQLNNAFPA----CHFIGRSRKKKQIITRDFVMETLTVNGQKF 176 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATE 239 Y+QVENSFTQPNA ++ +MLEWALDVTK + GDLLE+YCGNGNFS+ LAR FDRV+ATE Sbjct: 177 HYQQVENSFTQPNAGISEKMLEWALDVTKEASGDLLEMYCGNGNFSIPLARRFDRVVATE 236 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID-LKSYQCETIFV 298 I+K SV +AQ NIA N + NVQ+++MA+E+ + A+NG E + + + V Sbjct: 237 ISKVSVNSAQLNIAINGMHNVQVVKMASEDVSAALNGDVELPKSLVQAGVSELTPSVVLV 296 Query: 299 DPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHME 358 DPPR+GLD T ++++ ILYISCNPETL NLE LS TH+V R A+FDQFPYTHH+E Sbjct: 297 DPPRAGLDDATVELIRKIDSILYISCNPETLKANLEALSNTHEVVRYAMFDQFPYTHHVE 356 Query: 359 CGVLLTAK 366 GV L K Sbjct: 357 TGVFLRRK 364 >UniRef50_A4BHH3 TRNA (Uracil-5-)-methyltransferase n=1 Tax=Reinekea blandensis MED297 RepID=A4BHH3_9GAMM Length = 362 Score = 352 bits (904), Expect = 9e-96, Method: Composition-based stats. Identities = 163/366 (44%), Positives = 241/366 (65%), Gaps = 7/366 (1%) Query: 2 TPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 P +QY+ QLA+K RL+ ++ + +F S +HYRMRAEFR WH+G+ Y+ Sbjct: 1 MPFPFAPDQYDRQLADKTDRLKVLLDAWDHPELNIFSSTSAHYRMRAEFRFWHEGERSYY 60 Query: 62 IIFDQQTKSR-IRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 +F + + + V FP A+EL N LMT + V +P LR++LFQ+++LTT S A++ Sbjct: 61 AMFRPEDRRTPVEVVDFPVATELCNDLMTKVRNAVHEDPELRNRLFQVEFLTTQSGDALI 120 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI 180 +L+YH++LD W + A ++ +IGRA K ++ LD+DY+ E L + G++ Sbjct: 121 TLIYHRQLDSNWEERARYWQE-----QWGYPVIGRARKLRLVLDRDYVTETLSILGRDFH 175 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATE 239 + Q ENSFTQPNA + QM++WA++ ++G + DLLELYCGNGNFS+ LA+NF RVL TE Sbjct: 176 FHQYENSFTQPNAGVCEQMIQWAVEHSQGRESADLLELYCGNGNFSIPLAQNFRRVLGTE 235 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 299 I++ SV +AQ NIA N +DNV I RMA+E+ ++A R + + Y +TI VD Sbjct: 236 ISRTSVKSAQENIALNQVDNVSIARMASEDLSKAWLHNEPNRRFREFRIDDYDFDTILVD 295 Query: 300 PPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMEC 359 PPR+GLD +T ++++ + RI+YISCNPE++ KN+E L +++ ALFDQFPYTHHME Sbjct: 296 PPRAGLDEDTVELLKKFRRIIYISCNPESMVKNIEALRGQYRMTATALFDQFPYTHHMEA 355 Query: 360 GVLLTA 365 GV+L Sbjct: 356 GVILER 361 >UniRef50_Q8CRU6 Uncharacterized RNA methyltransferase SE_1582 n=64 Tax=Staphylococcus RepID=Y1582_STAES Length = 456 Score = 351 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 72/389 (18%), Positives = 150/389 (38%), Gaps = 46/389 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRS-----PVSHYRMRAEFRIWHDG-DD 58 L Y AQL K ++ ++ V + YR +++ + + Sbjct: 84 QLQHMTYRAQLDMKREQVVNLFHRKGPFENTVIKETIGMVNPWRYRNKSQIPVGQSNSNQ 143 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQ 107 + + Q++ I +DS ++M + + ++RH + + Sbjct: 144 VIMGFYRQRSHDIIDMDSCLIQDRQHQEVMNRVKYWLNELNISIYNEKTKTGLIRHLVVR 203 Query: 108 IDYLTTLSNQAVVSLLYHKK-------LDDEWRQEAEALRDALRAQNLNVHLIGRATKTK 160 Y T ++ +V + + L ++ ++E + + N + + ++ Sbjct: 204 TGYHT---DEMMVIFVTNGATFKQSELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSM 260 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYC 219 +D I+++L + Y + SF Q N++ ++ + AL+ + + + +L+ YC Sbjct: 261 TLYGKDKIEDQLSE----VTYHISDLSFYQINSSQTEKLYQQALNYAQLTGKEIVLDTYC 316 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G L +A V E+ ++ A+ N N + N AE+ Sbjct: 317 GIGTIGLYMAPLAKHVYGVEVVPQAIKDAEDNATKNQLKNTTFECGKAEDVILTWKS--- 373 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLS 337 + + + + VDPPR G D + RI+YISCNP T ++ + L+ Sbjct: 374 ---------QGIKPDVVMVDPPRKGCDETFLTTLLKLNPKRIVYISCNPSTQQRDAQILA 424 Query: 338 QTHKVERLALFDQFPYTHHMECGVLLTAK 366 + +++ + D FP T H+E L K Sbjct: 425 EQYELVEITPVDMFPQTTHIETVALFVRK 453 >UniRef50_D1BLZ0 RNA methyltransferase, TrmA family n=7 Tax=Veillonellaceae RepID=D1BLZ0_VEIPT Length = 457 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 143/381 (37%), Gaps = 34/381 (8%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L YE QL+ K +++ ++ + + P + YR + + + D+ Sbjct: 86 QLQHITYEGQLSLKTQKVKDVIERIAHQNPDLVKPTLGPKNPWAYRNKMQMPVGGTKGDI 145 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVL-------RHKLFQIDYLT 112 + + ++ + P E N + A + + + L + Sbjct: 146 QMGFYAMGSHDIVQGTNCPIQDEGNNIIAQACYQIAKEFDIEPYDEHTGKGVLRHVIGRI 205 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ----DYI 168 S ++ L+ + + E L + + VH + +T + L Y Sbjct: 206 GQSG-WMIILVTATEHLPHQEKWVEKLTERVPQVETIVHNV-NGKRTNVILGPKNSVLYG 263 Query: 169 DERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLA 227 D + K++ + +SF Q N + + AL + +++ YCG G SL Sbjct: 264 DGTITDHIKDLRFTLSPHSFFQVNPEQTTVLYDQALAYADLKGTEIVIDAYCGTGTISLF 323 Query: 228 LARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 287 LA V+ EI +P++ A+ N N DN + I A + Sbjct: 324 LAYKAKHVIGIEIVEPAITNARENARRNGYDNTEFIVADAAVEIPKLY------------ 371 Query: 288 LKSYQCETIFVDPPRSGLDSETE--KMVQAYPRILYISCNPETLCKNLETLSQ-THKVER 344 + + I DP R+G E RI+Y+SCNP T+ +++E L+ ++++ Sbjct: 372 KAGVRPDVIVFDPIRAGCKEEVLTSAASMEPKRIVYVSCNPATMARDIEILTHYGYELKE 431 Query: 345 LALFDQFPYTHHMECGVLLTA 365 + D FP T H+E LLT Sbjct: 432 VQPVDMFPMTAHVEAVALLTR 452 >UniRef50_Q73E18 Uncharacterized RNA methyltransferase BCE_0542 n=84 Tax=Bacillales RepID=Y542_BACC1 Length = 459 Score = 349 bits (897), Expect = 6e-95, Method: Composition-based stats. Identities = 68/389 (17%), Positives = 153/389 (39%), Gaps = 46/389 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPF------SDLVPEVFRSPVSHYRMRAEFRIWHDGDD 58 L Y+ QL +K + + + P + HYR +++ ++ + Sbjct: 90 QLQHLDYKEQLNQKRDIVVQAFQKYMNNGLEEKIRPTLGMENPWHYRNKSQLQVGRKDEK 149 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQ 107 + ++ Q + I + + N+ + + + ++R + + Sbjct: 150 VITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVRTIVTR 209 Query: 108 IDYLTTLSNQAVVSLLYHKKLDD-------EWRQEAEALRDALRAQNLNVHLIGRATKTK 160 + + V+L+ K+ E +++ A++ ++ N + KT Sbjct: 210 TAV---QTGEVQVTLITTKEELPNKEQFIAEVQKQMPAVKSIMQNVNWRKTSVIFGDKTF 266 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYC 219 ++ I E L ++ + +F Q N + + A + +++ YC Sbjct: 267 KLAGKEVIQETL----GDLSFELSARAFFQLNPEQTVVLYNEAKKAAALTGNEKIVDAYC 322 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G L LA + V ++ ++A A+ N + N + AE++ Sbjct: 323 GVGTIGLWLANDAAEVRGMDVIPEAIADARKNAKRHGFTNTKYEAGKAEQWLPKWV---- 378 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLS 337 + ++ + I VDPPR+G D + + + +++Y+SCNP +L ++++ L Sbjct: 379 --------KEGWRPDVIVVDPPRTGCDDKLLETILKVKPKQVVYVSCNPSSLARDVQALM 430 Query: 338 QTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++++VE + D FP+T H+E V L K Sbjct: 431 KSYEVEYVQPVDMFPHTAHVENVVKLVRK 459 >UniRef50_A6DAM4 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAM4_9PROT Length = 363 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 140/362 (38%), Positives = 215/362 (59%), Gaps = 15/362 (4%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 L YE QL K +L+ M + F EV H+R RAEFR+WH+GD Y+ + Sbjct: 14 LWQVPYEEQLKMKKDKLKEMFSKFEIPEIEVIYDKDEHFRARAEFRVWHEGDKTYYAMRK 73 Query: 66 QQ--TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLL 123 ++ + I ++ + I +LM +++ + N LR KL+++ +L+ + +V+L+ Sbjct: 74 RKEEGRGVIPIEECKIVDKAIYELMPKLMSEIEKNQNLRLKLYEVHFLSNSKGEVIVTLI 133 Query: 124 YHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQ 183 YH+K+D+ ++ + L+D + NV I R K D++Y+ E L + GK Y+ Sbjct: 134 YHRKVDESIAEDIKRLKDKFK----NVDFIVRKKGRKYIFDKNYLIEELEIKGKTYKYKI 189 Query: 184 VENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKP 243 +EN+FTQPN +N +M+ W LD T KGDL+ELYCGNGNF++ L+ NF +V+ATEI Sbjct: 190 IENTFTQPNREINKKMISWVLDNTSNLKGDLVELYCGNGNFTIPLSENFRKVVATEINPE 249 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 S+ AA YN N+ N+ + M+A EF++ + FN + + +DPPR+ Sbjct: 250 SIEAATYNAEINNRKNISFLAMSAAEFSE-LKKTGFFNSYDLKN--------VLIDPPRA 300 Query: 304 GLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 GLD ++ K V + I+YISCNPETL ++LETLS+ K++ A FDQFPYT+HMECGV+L Sbjct: 301 GLDEKSRKFVNEFDNIIYISCNPETLKRDLETLSKNRKIKAFAFFDQFPYTNHMECGVVL 360 Query: 364 TA 365 Sbjct: 361 ER 362 >UniRef50_A9KRF2 RNA methyltransferase, TrmA family n=6 Tax=Clostridiales RepID=A9KRF2_CLOPH Length = 554 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 82/382 (21%), Positives = 152/382 (39%), Gaps = 42/382 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH-II 63 H YE QL K ++ +++ F + P + HYR + + D + Sbjct: 188 HYLDLPYEEQLKIKQKQVSKLLSDFCKVHPILGMEHPYHYRNKVQAVFGRDAKGNIISGV 247 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQIDYLT 112 + + T I S + ++++ + +++ +LR+ L + + Sbjct: 248 YKEGTHQIIPTTSCLIEDKKADEIIGTIRGMLKSFKIKTYDEDSGYGLLRYVLVKRGF-- 305 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR-------ATKTKIELDQ 165 S + +V L+ + + ALR A V I + + + Sbjct: 306 -TSGEIMVVLVIASPILPSKKNFVAALRKAHPEITTIVLNINNRTDSLILGDRETVLYGK 364 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNF 224 YI++ L ++R SF Q N ++ + A+ + +++ YCG G Sbjct: 365 GYIEDTL----CGNVFRISSKSFYQVNPVQTERLYQLAIKAAGLTGKERVIDAYCGIGTI 420 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 L ++N VL E+ K ++ A N N I N A EF AM Sbjct: 421 GLVASKNAKEVLGVEVNKEAIKDAIANAKRNGITNEHFYNSDATEFMLAM---------- 470 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLS-QTHK 341 K + + + +DPPR+G + V++ R++YISCNP TL ++L+ + + ++ Sbjct: 471 --AEKGEKADVVIMDPPRAGSTEQFIDAVESVQPSRVVYISCNPVTLQRDLKYFTKKGYQ 528 Query: 342 VERLALFDQFPYTHHMECGVLL 363 V+ D FP+T H+E LL Sbjct: 529 VKEAWPVDMFPWTGHVETVCLL 550 >UniRef50_A8R8Z2 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8Z2_9FIRM Length = 455 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 158/380 (41%), Gaps = 37/380 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV----FRSPVSHYRMRAEFRIWHDGDDLY 60 L Y QL K ++ +M + + EV + YR + + + + Sbjct: 95 QLQHVSYAEQLRFKKQKVIDVMKRIAQIDVEVLDVIGMENPTFYRNKGQIPVGITNKQVV 154 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV---RNNPVLRHKLFQIDYLTTLSNQ 117 + + + I ++S S+ IN+++ M + +N + RH L + + + + Sbjct: 155 TGFYRINSNTIIDMNSCMIQSKRINEVLVCMKKLLNKYQNADLFRHLLIKDAFAS---GE 211 Query: 118 AVVS-LLYHKKLD------DEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDE 170 +V ++ KL E + ++ + N + + + YI + Sbjct: 212 VMVVWIVRSSKLSHKEEMCKELVENLPYIKSVIINVNTREDNVILGKEEHVLYGNSYITD 271 Query: 171 RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALA 229 + ++ + SF Q N ++ AL+ + S + +++LYCG G S+ LA Sbjct: 272 AI----HDLNFHISSRSFYQVNPVQTERLYGKALEFAQLSGKEEVIDLYCGVGTISMFLA 327 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 + V+ EI ++ A+ N N IDN+ + A + + + + + Sbjct: 328 QKAKHVIGVEIVDAAIRDAKINAKLNQIDNIDFVCSDAASYAKKL------------EKQ 375 Query: 290 SYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTHKVERLA 346 + + + VDPPR G D T + RI+Y+SC+P TL ++++ L + + + + Sbjct: 376 GKKPDVVVVDPPRKGCDDLTLDSIVKMQPKRIVYVSCDPATLARDIKKLDEKGYAAQVVQ 435 Query: 347 LFDQFPYTHHMECGVLLTAK 366 D FP++ H+E VLL + Sbjct: 436 PVDMFPFSFHVESIVLLQKR 455 >UniRef50_A4J6R9 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J6R9_DESRM Length = 457 Score = 346 bits (889), Expect = 6e-94, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 152/387 (39%), Gaps = 44/387 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y+ QL K ++S + L P + HYR + ++ + Sbjct: 85 QLQHLDYQEQLTYKRSVVESALFKIGGLKGVEVLPTLGMRNPWHYRNKIHLQVKEAKGRI 144 Query: 60 YHIIFDQQTKSR---IRVDSFPAASELINQLMTAMIAGVR-------NNPVLRHKLFQID 109 + + + + S + INQ++ + + + R L + Sbjct: 145 KLGFYAEGSYELAAGLAGQSCLLVQKEINQVIAILEELINSYKLTPYHWGEKRGLLRHVM 204 Query: 110 YLTT-LSNQAVVSLLYH-------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI 161 S Q +V L+ + +R N N I + ++ Sbjct: 205 IRQGFHSGQCMVVLVTSPEEWQAENAFSRALVARQPKIVSVIRNINRNPGRIVLGEENRV 264 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCG 220 ++YI + L + + NSF Q N ++ + A + + +++ YCG Sbjct: 265 MYGKEYIVDEL----NGLNFNISANSFYQVNTLQTEELYQKAKEFAQLQGHERVIDAYCG 320 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G +L LAR+ V+ EI P+VA A+ N N I N + + A E+ M Sbjct: 321 IGTIALYLARSTVEVVGMEIVPPAVADAKENARLNGITNTKFFQGAVEKLLPRMA----- 375 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ 338 K + + + +DPPR G + E + PRI+Y+SC+P TL ++L L + Sbjct: 376 --------KDLKPDVVVLDPPRKGCEKEVLTAISESKVPRIVYVSCDPATLARDLGVLDK 427 Query: 339 -THKVERLALFDQFPYTHHMECGVLLT 364 ++ ++ D FP+T+H+EC VL++ Sbjct: 428 LGYQTLQVQPVDMFPWTYHVECVVLMS 454 >UniRef50_A6QBC0 tRNA (uracil-5-)-methyltransferase n=4 Tax=Epsilonproteobacteria RepID=TRMA_SULNB Length = 371 Score = 346 bits (889), Expect = 7e-94, Method: Composition-based stats. Identities = 161/363 (44%), Positives = 234/363 (64%), Gaps = 7/363 (1%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 L + Y QL K R+ +++PF E+F SP S YR RAEFRIWH+ + + + + Sbjct: 14 LYNQNYTQQLQLKEQRVSELLSPFYTGELELFDSPDSRYRARAEFRIWHESERCDYAMGN 73 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNP-VLRHKLFQIDYLTTLSNQAVVSLLY 124 + K + ++ P E I + M ++ + + VL+ +LF +++L T +++ +V++LY Sbjct: 74 IEKKGAVTIEECPKVIEPIEKRMWKLLEKINASQEVLKQRLFAVEFLATTTDECLVTMLY 133 Query: 125 HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQV 184 H+KLD+ W +EA+ L L N ++GR+ K K+ L +++ E L + GKE Y Q Sbjct: 134 HRKLDEAWSEEAKMLEREL-----NCRVMGRSRKQKVILSDEFVTETLEIDGKEFTYVQY 188 Query: 185 ENSFTQPNAAMNIQMLEWAL-DVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKP 243 E+ FTQPN A+N++M+EWA+ K GD LE YCG GNF+L L+ FD VLATEI+K Sbjct: 189 ESGFTQPNPAVNVKMIEWAIWQAKKVGYGDFLESYCGLGNFTLPLSHYFDNVLATEISKR 248 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 S+ AA N N ++N+ R+A+EE T+A+NGVREF+RL+GIDLKSY T+ VDPPR+ Sbjct: 249 SIHAALQNCELNAVENITFARLASEEMTEALNGVREFSRLKGIDLKSYDFSTVLVDPPRA 308 Query: 304 GLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 GLD T +++ I+YISCNPETL ++LETL +TH V ALFDQFP+T H+E GV L Sbjct: 309 GLDEGTIELISNIDNIIYISCNPETLARDLETLIKTHTVMEAALFDQFPHTEHVESGVFL 368 Query: 364 TAK 366 K Sbjct: 369 QKK 371 >UniRef50_B8D1I4 RNA methyltransferase, TrmA family n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1I4_HALOH Length = 453 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 149/387 (38%), Gaps = 45/387 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE-----VFRSPVSHYRMRAEFRIWHDGDDL 59 HL Y QL K ++ + + YR +A+F + D + Sbjct: 82 HLQQMDYSLQLLHKQKIVKDTLERIGGFEEVRVNEVIGADHPWIYRNKAQFPLGSDNEGR 141 Query: 60 YH-IIFDQQTKSRIRVDSFPAASELINQLMTA-----------MIAGVRNNPVLRHKLFQ 107 + + T + LIN++ + + +LRH + + Sbjct: 142 VITGFYQKGTHQVVPHRQCVIQHPLINRIARKTISILNNYDLTVYDEKTHTGLLRHLVVR 201 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQ-------EAEALRDALRAQNLNVHLIGRATKTK 160 + T NQA++ + K E ++ E L+ L+ N + KT Sbjct: 202 VGICT---NQALLIFVTRDKKFKELQEIARKLMTEIPELKGVLQNINPRRTNVIMGDKTL 258 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYC 219 + DY + + + Y +SF Q N ++ S + +++ YC Sbjct: 259 LIKGNDYYIDYI----GSIRYAISPHSFFQVNTLQTERLYNTVRKYAGLSGQETVVDAYC 314 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G+ + LA V E+ ++ A+ N A N I+N I+ E+ + Sbjct: 315 GAGSIGIYLAGEARTVYGIEVVGSAIEDAERNAALNGINNCIFIKGKVEDKLPEL----- 369 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLS 337 +D K + + I DPPR GLD ET V P+I+Y+SCNP TL ++L+ + Sbjct: 370 ------VDKKKIKPDVIIFDPPRKGLDKETMATVLEVLPPKIVYVSCNPATLARDLKEIK 423 Query: 338 QTHKVERLALFDQFPYTHHMECGVLLT 364 + + + D FP T+H+EC V L Sbjct: 424 ACYDINEVQPVDLFPQTYHVECVVKLE 450 >UniRef50_Q8DKB7 Uncharacterized RNA methyltransferase tlr0942 n=5 Tax=Cyanobacteria RepID=Y942_THEEB Length = 449 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 148/383 (38%), Gaps = 42/383 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVP-----EVFRSPVSHYRMRAEFRIWHDGDDL 59 Y QLA K ++ +A L P + YR + + + + Sbjct: 84 QWQRVAYATQLAAKEQLVKDAIARIGHLEPQAFLPILAAPNPFGYRNKVTYPLGRRHGAV 143 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLT------T 113 + + + + ++ P +N L+ A+ ++ P+ R + + + Sbjct: 144 VAGYYQKGSHHLVNLNQCPVQDPRLNPLLAALKQALQPWPIYREQTHEPGFRHLGLRIGQ 203 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQ-------NLNVHLIGRATKTKIELDQD 166 + + +++L+ L EAE + N +V +T++ + Sbjct: 204 RTGEQLITLVLAGPLPAGLAAEAEGWLQRFQGVIGVCVNFNHHVGNRIFGDETQVLAGRP 263 Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFS 225 Y+ E + + ++ +F Q N A Q++ D + + L++LYCG G S Sbjct: 264 YLWEEMA----GVRFQIASTTFFQVNTAQAEQLVTTLRDWIAPTGQERLVDLYCGVGTLS 319 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 L LA V+ E+ SV A N N I+N + AEE+ Sbjct: 320 LPLAGAVAEVIGVEVHSASVQQAIANAQHNGINNAHFVCAKAEEWLPRY----------- 368 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLS--QTHK 341 + + +DPPR G D + PR+LY+SC+P TL ++L L T++ Sbjct: 369 ----DQAVDVLILDPPRKGCDRAVLDAILHNCPPRLLYVSCHPATLARDLAHLCSTGTYQ 424 Query: 342 VERLALFDQFPYTHHMECGVLLT 364 + ++ D FP T H+E LLT Sbjct: 425 LAKIQPLDMFPQTAHVETIALLT 447 >UniRef50_A8RH83 Putative uncharacterized protein n=6 Tax=Clostridiales RepID=A8RH83_9CLOT Length = 553 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 79/384 (20%), Positives = 151/384 (39%), Gaps = 42/384 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH-II 63 L +Y QLA K + + ++ + P + HYR + D I Sbjct: 186 QLLDMEYAKQLAFKQKQAEELLKGLCPVKPIIGMKDPFHYRNKVHAVFDRDKKGNIISGI 245 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQIDYLT 112 +++ T I V+ ++ ++++ + +++ +LRH L + + T Sbjct: 246 YEENTHHVIPVEKCLIENQKADEIIGTIRGMLKSFKIRTYDEDTGFGLLRHVLIRKGFST 305 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRD-------ALRAQNLNVHLIGRATKTKIELDQ 165 + +V L+ + +ALR+ ++ N + K + + Sbjct: 306 ---GEIMVVLVTASPVFPSKNNFVKALREKHPEITTIVQNINGRGTSMVLGDKEHVLYGK 362 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNF 224 YI + L +R SF Q N + E AL + + + +++ YCG G Sbjct: 363 GYIVDEL----CGCRFRISSKSFYQVNPVQTEILYEKALSLAGLTGQELVVDAYCGIGTI 418 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 + ++ +V+ E+ + +V A N N I+N++ A F M Sbjct: 419 GIIASKAAGKVIGVELNQDAVRDAVNNAKMNGIENIRFYCNDAGRFLVNM---------- 468 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THK 341 + + + + +DPPRSG E V +++Y+SCNPETL +++ + + ++ Sbjct: 469 --AEQGEKADVVIMDPPRSGSTEEFMDAVGKLGAEKVVYVSCNPETLARDVRYMKKMGYR 526 Query: 342 VERLALFDQFPYTHHMECGVLLTA 365 L D FP T H E VLL Sbjct: 527 AAEAWLVDMFPGTVHTESIVLLQK 550 >UniRef50_D2M1T5 RNA methyltransferase, TrmA family n=2 Tax=Bacillus RepID=D2M1T5_BACS4 Length = 469 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 78/388 (20%), Positives = 151/388 (38%), Gaps = 42/388 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE-------VFRSPVSHYRMRAEFRIWHDGD 57 L YE QL K ++ ++ + + + YR +++ ++ H Sbjct: 97 QLQHLSYEGQLKGKKDIVRQAFERYTKINLDKVDFHDTIGMEEPWKYRNKSQMQVGHHQG 156 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLF 106 + ++ + I ++ N++ + + VLR + Sbjct: 157 KVIAGLYSPNSHKLIDLEDCIVQHPQTNKVTNVVKQLAADMNIAPYNERKRTGVLRTIVT 216 Query: 107 QIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD 166 ++ + + + V L+ KK + EA++ L V I KT + + Sbjct: 217 RVGF---ETGEYQVVLVTAKKDIPKVDLFIEAIKQRLPDVTSIVQNI-NPKKTSLVFGDE 272 Query: 167 YID----ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGN 221 I E++ E + +F Q N ++ + A + + + + +++ YCG Sbjct: 273 TIVLYGKEKIEETMSEFRFNLSPRAFFQLNPIQTKKLYDAAKEAAQLTGKEKVVDAYCGV 332 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G L LA + ++ K S+ A+ N A+ I N + AE Sbjct: 333 GTIGLWLAAGAKEIRGMDVIKESIEDAKNNAKAHGIKNAHYVSGKAEHLLPEW------- 385 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ- 338 + + + + + VDPPR+GLD + + RI+Y+SCNP TL KN++ LS+ Sbjct: 386 -----EKEGWHPDVVVVDPPRTGLDETFIQTLLRVKPKRIVYVSCNPSTLAKNVDALSKG 440 Query: 339 THKVERLALFDQFPYTHHMECGVLLTAK 366 +K++ L D FP T +EC + K Sbjct: 441 GYKLKALQPVDMFPQTAQVECVARIELK 468 >UniRef50_C5ELW2 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C5ELW2_9FIRM Length = 475 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 87/413 (21%), Positives = 152/413 (36%), Gaps = 69/413 (16%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-------PEVFRSPVSHYRMRAEFRIWHDGD 57 L YE QL K ++ + + P + YR +A+F + D Sbjct: 81 QLQAMSYEEQLRFKENKVLNNLMRIGKFKRDEIKMLPIMGMENPWRYRNKAQFPFGRNKD 140 Query: 58 DLYH-IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKL 105 + +T I D E +++ + ++ + ++RH L Sbjct: 141 GEIIAGFYAGRTHDIIGNDDCLLGVEENQEILGIIKGFMKENGLEPYDENAHKGLVRHVL 200 Query: 106 FQIDYLTTLSNQAVVSLLYHKK-----LDDEWRQE---------AEALRDALR------- 144 + + T + +V L+ + + L+D R A+ L L Sbjct: 201 IRKGFKT---GELMVCLVVNGRTLGGRLEDGLRDSRADSLADNSADRLAGCLVEKLCQVK 257 Query: 145 -------AQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNI 197 + N+ + + YI + + ++ Y+ SF Q N Sbjct: 258 GMTSISYSVNMEKTNVIMGKEVVNLYGPGYITDYI----GDVQYQISPLSFYQVNPVQTE 313 Query: 198 QMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANH 256 ++ AL+ S + +LYCG G SL LA+ +V EI ++ A+ N A N Sbjct: 314 KLYGTALEYADLSGNETVWDLYCGIGTISLFLAQKAKKVYGVEIIPQAIEDARRNAALNG 373 Query: 257 IDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA- 315 +DNV+ AEE + + + I VDPPR G D+ + Sbjct: 374 MDNVEFFVGKAEEVLP-----------EQYEKNQIHADVIVVDPPRKGCDTVCLDTILKM 422 Query: 316 -YPRILYISCNPETLCKNLETLS-QTHKVERLALFDQFPYTHHMECGVLLTAK 366 +++Y+SC+ TL ++L L+ + V ++ D FP T H EC V L K Sbjct: 423 RPEKVVYVSCDSATLARDLRYLADGGYVVGKVRGCDMFPGTVHTECIVELCRK 475 >UniRef50_UPI00016C01B5 RNA methyltransferase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01B5 Length = 446 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 84/385 (21%), Positives = 159/385 (41%), Gaps = 50/385 (12%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 +YE QL K +++ + + P + HYR +A++ I + Sbjct: 83 QHIKYEFQLKYKQKQVKDCLERIGKIREVEVLPTIAMENPIHYRNKAQYPIREVDGKIQI 142 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDY 110 + ++ + ++ ++ ++ A+ + + + RH + + Sbjct: 143 GFYAAKSHQVVDIEDCVIGNQKNGAIVDAIRKFXKDXKISIYNEATHKGLARHLVIR--- 199 Query: 111 LTTLSNQAVVSLLYHKKLDDEWRQEAEALR------DALRAQNLNVHLIGRATKTKIELD 164 + ++A+V L+ + K + E LR L N + A +T Sbjct: 200 NSINFDEAMVCLVINGKKLPHAQDLVERLRAIPGITGILLNHNTAKGNVILAEQTTTLDG 259 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGN 223 +DYI +++ E+ ++ SF Q N + + AL V + + +L+ YCG G Sbjct: 260 RDYIMDKI----GELTFKISLLSFFQVNPVQTKVLYDIALGVAALTGSETVLDAYCGIGT 315 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 SL LA+ RV+ E +VA A N N I NV+ + AE+ Sbjct: 316 ISLFLAKEAKRVVGVEAIPQAVANANENAQINGIANVEFVLGNAEDVVL----------- 364 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTH 340 + + + VDPPR G + + K + A +++YISC+P TL ++++ + + Sbjct: 365 ------GEKFDVVVVDPPRKGCEEDFLKTIVANAPAKMVYISCDPATLARDVKFMYENGY 418 Query: 341 KVERLALFDQFPYTHHMECGVLLTA 365 V ++ D FPYT H+E VLL+ Sbjct: 419 VVNKVQPVDMFPYTSHVETCVLLSR 443 >UniRef50_B9LA97 tRNA (uracil-5-)-methyltransferase n=1 Tax=Nautilia profundicola AmH RepID=TRMA_NAUPA Length = 365 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 132/362 (36%), Positives = 217/362 (59%), Gaps = 13/362 (3%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 L Y+ QL K +L+ M + F EV H+R RAEFR+WH+GD Y+ + Sbjct: 14 LWEMPYDEQLKMKSEKLKEMFSEFDMPEIEVVHGSDEHFRARAEFRVWHEGDKSYYAMRK 73 Query: 66 QQ--TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLL 123 ++ + I ++ + I +MT ++ + N LR KL++ID+L+ + +++L+ Sbjct: 74 RKEDGRGVIPIEECKIVDKAIYDIMTPLLKEIEKNDNLRFKLYEIDFLSNSKGELIITLI 133 Query: 124 YHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQ 183 YHKK+D+ ++ + L++ + + I R K D++Y+ E L + K Y+ Sbjct: 134 YHKKVDESIAEDIKKLKEKFKNADF----IVRKKGRKYVFDKNYLIEELNINSKTYKYKI 189 Query: 184 VENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKP 243 +EN+F+QPN MN +M+EWA+ ++ KGDL+ELYCGNGNF++ L+ F++V+ATEI+K Sbjct: 190 IENTFSQPNRQMNQKMIEWAMRNSEDLKGDLVELYCGNGNFTIPLSERFNKVIATEISKE 249 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 S+ AA YN N DN+ + M+A EF++ + + + Y + I +DPPR+ Sbjct: 250 SIEAATYNAEINARDNITFLAMSAAEFSK-------LYKDRSPLITKYDLKNILIDPPRA 302 Query: 304 GLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 GLD ++ + V + I+YISCNPETL ++L+TL++ +++ A FDQFPYT+H ECGV+L Sbjct: 303 GLDDKSREFVNEFDNIIYISCNPETLQRDLKTLAKGREIKAFAFFDQFPYTNHAECGVIL 362 Query: 364 TA 365 Sbjct: 363 KK 364 >UniRef50_C9R7X4 RNA methyltransferase, TrmA family n=1 Tax=Ammonifex degensii KC4 RepID=C9R7X4_AMMDK Length = 436 Score = 340 bits (872), Expect = 6e-92, Method: Composition-based stats. Identities = 81/374 (21%), Positives = 153/374 (40%), Gaps = 31/374 (8%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L YE QL K +++++ + P + HYR + + +G Sbjct: 81 QLLHLDYEHQLHFKNKVVENVLLRLGKLTEVEVKPILGMENPWHYRNKVRLHVAWEGRKP 140 Query: 60 YHIIFDQQTK---SRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYL-TTLS 115 ++ + RI +N L + ++ + + L + + Sbjct: 141 VLGLYAPSSHVIGHRIDRSPCYILDGQLNALARVLAGLIKKHAEMLAGLTAVSLRLAAAT 200 Query: 116 NQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVA 175 + +V L + W++ + L A+ V +G K ++ + +I + L Sbjct: 201 GETMVVLEGASEHYSRWKRLVDELTAAVP--VTTVVRVGARGKEEVLYGEGHITDSL--- 255 Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDR 234 + +R SF Q N ++ L+ S + +++ YCG G +L LAR + Sbjct: 256 -DGLSFRLSALSFYQVNPVQTSRLYRKVLEYASLSGRERVIDAYCGVGTITLFLARKAAQ 314 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 V+ EI+ +VA A N A N + +V ++ AAEE + + Sbjct: 315 VIGIEISPEAVALASVNAAQNGLSHVSFVKGAAEEVLPELLAREGM------------FD 362 Query: 295 TIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQF 351 + +DPPR G+ + + PR++Y+SCNP TL ++L L +Q ++V+ + D F Sbjct: 363 LVVLDPPRQGVKQAALESLVRAQVPRVIYVSCNPATLARDLGFLSAQGYRVQEVQPVDMF 422 Query: 352 PYTHHMECGVLLTA 365 P+T+H+EC L Sbjct: 423 PHTYHVECVAYLCR 436 >UniRef50_Q71YW4 Uncharacterized RNA methyltransferase LMOf2365_1727 n=19 Tax=Bacillales RepID=Y1727_LISMF Length = 459 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 70/388 (18%), Positives = 144/388 (37%), Gaps = 42/388 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE-------VFRSPVSHYRMRAEFRIWHDGD 57 L Y AQL K + + + + P + YR +++F+ G Sbjct: 86 QLQHVAYSAQLELKRDIVIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMVGS 145 Query: 58 DLY-HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKL 105 +F + + ++ + ++ + + + ++R + Sbjct: 146 GQVETGLFGANSHQLVPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRTIV 205 Query: 106 FQIDYLTTLSNQAVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI 161 + T + ++ L +++ E + ++ N + +T + Sbjct: 206 VRTGVKTGETQLVFITNSKKLPKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFGDETFL 265 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCG 220 ++ I+E+L + + +F Q N ++ + + + L++ YCG Sbjct: 266 LAGKESIEEKLME----LEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYCG 321 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G A A V +I S+ A+ N N I+NV AE+ Sbjct: 322 VGTIGQAFAGKVKEVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVN---- 377 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ 338 + ++ + + VDPPRSG D K + +++Y+SCNP TL ++L L++ Sbjct: 378 --------EGFRPDAVIVDPPRSGCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLAK 429 Query: 339 THKVERLALFDQFPYTHHMECGVLLTAK 366 +++ + D FP T H+E VLL K Sbjct: 430 KYRIRYMQPVDMFPQTAHVETVVLLQLK 457 >UniRef50_B9YDP0 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDP0_9FIRM Length = 453 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 85/377 (22%), Positives = 146/377 (38%), Gaps = 32/377 (8%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVF----RSPVSHYRMRAEFRIWHDGDDLY 60 L + E Q K R+ L EV +YR + + + + D Sbjct: 91 QLQIMEAELQAEFKRHRVADCFQRIGHLDVEVQPVLSMEFPWNYRNKVQVPVGVNRDGKV 150 Query: 61 H-IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV---LRHKLFQIDYLTTLSN 116 + + + D SEL NQ++ ++ + + LRH L + + T Sbjct: 151 ISGYYRSHSHDIVDFDECCLHSELENQILRSLRSWIEEAGDPAQLRHLLIKHAFKTGQVM 210 Query: 117 QAVVSLLYHKKLDDEWRQEA----EALRDALRAQNLNVHLIGRATKTKIELDQDYIDERL 172 +++ + K DE + +R + N + + + I+E L Sbjct: 211 VVLIAKSENLKGKDELIERLTAAYPQIRSIILNVNGREDNVILGDREIVLWGSASIEEEL 270 Query: 173 PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARN 231 + ++ SF Q N + A+++ + + ++++YCG G L+ AR Sbjct: 271 ----LGLRFQISAKSFYQINPVQTEVLYTKAIELAGLTGEETVIDVYCGTGTIGLSAARK 326 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY 291 RV+ EI +V A+ N N I N + I A T + R Sbjct: 327 AKRVIGIEIVPSAVEDAKRNAVRNGIANAEFICGDAGVCTAQLLERR------------I 374 Query: 292 QCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTHKVERLALF 348 Q + VDPPR GLD T + RI+Y+SC+P TL ++ L + + VE + Sbjct: 375 QPDVAIVDPPRKGLDGTTIDSLVKMNPERIVYVSCDPATLARDCAVLNERGYGVEVVQPV 434 Query: 349 DQFPYTHHMECGVLLTA 365 D FP T H+E VL++ Sbjct: 435 DMFPQTTHVETVVLMSK 451 >UniRef50_O31545 Uncharacterized RNA methyltransferase yfjO n=15 Tax=Bacillales RepID=YFJO_BACSU Length = 466 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 70/391 (17%), Positives = 147/391 (37%), Gaps = 48/391 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE-------VFRSPVSHYRMRAEFRIWHDGD 57 L Y QL EK + + + E + +YR +++F+I Sbjct: 92 QLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNKSQFQIGRSQS 151 Query: 58 DLYH-IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKL 105 ++ + + + N+ + + + +R + Sbjct: 152 GSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYNERKRKGDVRTIV 211 Query: 106 FQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEAL-------RDALRAQNLNVHLIGRATK 158 ++ + + + V L+ K+ + +A+ + ++ N + K Sbjct: 212 TRVGF---ETGEVQVVLVTAKETLPHKEEIVKAIQKRLPEVKSIIQNVNGAKTSVIFGEK 268 Query: 159 TKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLEL 217 TK + I E L ++ + +F Q N +++ + + + + +++ Sbjct: 269 TKQLAGKTVIQEVL----GDVSFELSARAFFQLNPEQTVKLYDEVKKAAQLTGKEKVVDA 324 Query: 218 YCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 277 YCG G + +A V ++ K S+ A+ N + + N + AE + Sbjct: 325 YCGVGTIGMWVADGAKEVRGMDVIKESIDDAKKNAKKHGMANATYVTGTAEHWLPKWT-- 382 Query: 278 REFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLET 335 + ++ + + VDPPR+G DS ++ R +Y+SCNP TL K+L+T Sbjct: 383 ----------KEGFRPDVVIVDPPRTGCDSTFLDTIKKVKPKRFVYVSCNPSTLAKDLQT 432 Query: 336 LSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 LS+ ++V+ + D FP T H+E L K Sbjct: 433 LSKDYRVDYIQPVDMFPQTAHVEAVARLVLK 463 >UniRef50_Q74I68 Uncharacterized RNA methyltransferase LJ_1698 n=11 Tax=Lactobacillus RepID=Y1698_LACJO Length = 450 Score = 338 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 73/382 (19%), Positives = 149/382 (39%), Gaps = 38/382 (9%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFS----DLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 L +Y+ QL K ++ +++ + + + YR +A+ + L Sbjct: 82 LAHIKYDKQLEFKRNQVVNLLHKADLDNVKVGQTMPSPEETGYRNKAQVPVREVNGKLDI 141 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQ--------IDYLTT 113 F + + + + SF I++++ + +R N V + + Sbjct: 142 GFFRKHSHDLVPLTSFFTTDPEIDRVLIKVRDILRKNHVPAYDEIHNKGEVRYLEVRRSK 201 Query: 114 LSNQAVVSLLYHKKLDDEWRQ------EAEALRDALRAQNLNVHLIGRATKTKIELDQDY 167 + + +V L+ K + ++ E + + + N + K + + Sbjct: 202 ATGEIMVILVCLHKDFPQLKEVTKEISEIKGVTSVVLNHNPKKTNVILGKKDYLLWGEPQ 261 Query: 168 IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSL 226 I +++ ++ ++ SF Q N+ ++ + A+ D+ ++ Y G G L Sbjct: 262 ITDKI----GDVSFKISPQSFFQINSLQTPRLYDLAIQKADLKPDDVVIDAYSGIGTIGL 317 Query: 227 ALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286 ++A++ V E+ +P+V A N N I N + + AEE Sbjct: 318 SVAKHVKAVRGMEVIEPAVEDANANAKLNGITNAEYVVGKAEEVMPRW------------ 365 Query: 287 DLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTHKVE 343 + + + IFVDPPR GL E +I+YISCNP T+ ++L+ Q + + Sbjct: 366 AKEGLKTDVIFVDPPRKGLTPEFIDAAVETNPKKIVYISCNPATMVRDLQLFKEQGYDFD 425 Query: 344 RLALFDQFPYTHHMECGVLLTA 365 + D FP T H+E +L Sbjct: 426 EIDPVDMFPQTPHVEAVAVLER 447 >UniRef50_C5NXJ3 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXJ3_9BACL Length = 446 Score = 336 bits (862), Expect = 7e-91, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 173/387 (44%), Gaps = 45/387 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMM-----APFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 +L YE QL K ++Q++M + +++ + HYR ++ + ++ Sbjct: 77 NLVHMNYEEQLKFKKKKVQNVMDKALGKDYIEVLDTLGMEDGYHYRNKSVIPVQKVNGEV 136 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQI 108 + ++ + ++ + N LM + + + ++ +RH +F+ Sbjct: 137 KMGYYKPRSHDVVNIEKCFIQYDEHNVLMNKLRSLISELNLSVYDENSHSGAIRHIMFRT 196 Query: 109 DYLTTLSNQAVVSLLYHKKLD--DEWRQEAEALRDALRAQNLNVH----LIGRATKTKIE 162 + TL ++ +V ++ +K + DE+ ++ L D + + LN++ + KT+ Sbjct: 197 N---TLKSEIMVGIVAKEKFNKLDEFVEKISKLDDRIVSIMLNINDKKTNVIFGDKTENL 253 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGN 221 +DYI + L + ++ SF Q N + AL++ + + D +++ YCG Sbjct: 254 FGKDYITDTL----DGIDFKISLRSFYQVNPVQTEVLYSKALELAELKETDTIIDAYCGI 309 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G SL A+ +V EI + +V A N N+I NV+ + +E+ + + Sbjct: 310 GTISLFAAKKVKKVYGIEIVEAAVLDACENAKNNNITNVEFLLGKSEDVIKKLIS----- 364 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETLSQ- 338 + + + + VDPPR G + + +I+Y+SCNP TL +++E + Sbjct: 365 -------QDVKLDAVIVDPPRKGCEESFLRDLAAMDIEKIVYVSCNPATLARDMEIMRGL 417 Query: 339 THKVERLALFDQFPYTHHMECGVLLTA 365 +K+ + D FP T+H+E VLL+ Sbjct: 418 GYKLGSVQPVDMFPGTYHVETVVLLSK 444 >UniRef50_C5EMJ7 RNA methyltransferase n=7 Tax=Bacteria RepID=C5EMJ7_9FIRM Length = 554 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 148/385 (38%), Gaps = 42/385 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH-II 63 + +Y QL K ++ + + P + HYR + D I Sbjct: 189 QMLDMEYTEQLKRKQKVVEDLFRGVCPVKPIIGMKDPFHYRNKVHAVFDRDKRGNIISGI 248 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQIDYLT 112 + + + I V++ + ++++ + +++ +LRH L + + T Sbjct: 249 YQENSHDVIPVETCMIEDKKADEIIGTIRGMLKSFKIRTYDEDTGYGLLRHVLIRRAFST 308 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRD-------ALRAQNLNVHLIGRATKTKIELDQ 165 N+ +V L+ + +ALR+ ++ N + K + + Sbjct: 309 ---NEIMVVLVTASPVFPSKNNFVKALREKHPEITTIIQNINGRGTSMVLGNKENVLYGK 365 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNF 224 YI + L +R SF Q N + AL++ ++ ++ YCG G Sbjct: 366 GYIVDEL----CGCKFRISSKSFYQINPVQTEVLYGKALELAGLKGQEVVIDAYCGIGTI 421 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 + +R +V+ E+ + +V A N N IDN++ A F M Sbjct: 422 GIIASRQAGQVIGVELNQDAVKDAVNNAKMNDIDNIRFYCNDAGRFMVNM---------- 471 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ-THK 341 + + + + +DPPRSG E + +++Y+SCNPETL +++ + + + Sbjct: 472 --AERGDKADVVIMDPPRSGSTEEFMDSIAKLGAGKVVYVSCNPETLVRDVRYMKKLGYA 529 Query: 342 VERLALFDQFPYTHHMECGVLLTAK 366 E + D FP T H E V L K Sbjct: 530 AEGVWPVDMFPATRHTEIIVELCRK 554 >UniRef50_A4XGR8 RNA methyltransferase, TrmA family n=4 Tax=Bacteria RepID=A4XGR8_CALS8 Length = 452 Score = 333 bits (854), Expect = 7e-90, Method: Composition-based stats. Identities = 74/385 (19%), Positives = 153/385 (39%), Gaps = 44/385 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVP----EVFRSPVSHYRMRAEFRIWHDGDDLY 60 HL +Y+ QL K + ++ L P + YR + + D Sbjct: 82 HLMHAKYQHQLKLKKLLVEDAFRRIGKLSPRINDVIGMENPFRYRNKTALPVGGDYKKPQ 141 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQID 109 + + T + +D E + ++ M ++ + VLRH + + Sbjct: 142 IGFYRKMTHDIVDIDYCLIQHEFCDDVIKGMKDLIQKHKIEVYDEKKHKGVLRHIVVRNS 201 Query: 110 YLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR------ATKTKIEL 163 + ++ ++ L+ K ++ + + L + + ++L ++L + + + Sbjct: 202 FAF---DEMMIILVCTKVPENLETIKKDILNNFSKIKSLYLNLNPKRTNVILGDEDILIW 258 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNG 222 I +R+ + + SF Q N+ + + + +++ ++Y G G Sbjct: 259 GSSTIKDRI----GNLTFEISPKSFFQVNSMQTEVLYSQVVKYLRNIDAEIVFDVYSGIG 314 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 S+ +A +V EI + +V A+ + N I N++ I AE Sbjct: 315 TISMFIAPFCKKVYTIEIVEDAVEDAKKSSKNNGISNIEFICGRAE------------IE 362 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQT 339 + + + + +DPPRSG + E + + P I+Y+SCNP TL ++ L S Sbjct: 363 IPKLLKNGIIPQAVILDPPRSGCEKELLESLIEHKIPNIIYVSCNPSTLARDSSILFSNG 422 Query: 340 HKVERLALFDQFPYTHHMECGVLLT 364 +++ + D FP T H+EC VL+T Sbjct: 423 YEILEVQPVDMFPQTFHVECVVLMT 447 >UniRef50_C0CT87 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CT87_9CLOT Length = 506 Score = 333 bits (853), Expect = 8e-90, Method: Composition-based stats. Identities = 82/413 (19%), Positives = 152/413 (36%), Gaps = 69/413 (16%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV------------------------------- 33 L YEAQL K ++ + + + Sbjct: 100 QLQMMDYEAQLRFKERKIYNNLKRIGGMENLRLPGEECGSEDEGAGTGERAGADGRKIVR 159 Query: 34 --PEVFRSPVSHYRMRAEFRIWHDGDDLYH-IIFDQQTKSRIRVDSFPAASELINQLMTA 90 P + YR +A+F D + +T S I + E +++ Sbjct: 160 MEPIMGMEEPWRYRNKAQFPFGMSKDGRVITGFYAGRTHSIIENEDCLLGVEENREILRI 219 Query: 91 MIAGVR-----------NNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEAL 139 + + + ++RH L + + T + +V L+ + + + E L Sbjct: 220 VREFMEEFGVKPYDEEGHRGLVRHCLIRKGFAT---GEIMVCLVVNGRKLPKDEVLVERL 276 Query: 140 RDALRAQNLNVHLIGRATKTKIELDQDYIDE----RLPVAGKEMIYRQVENSFTQPNAAM 195 R ++ L KT + L + ++ + ++ Y+ SF Q N A Sbjct: 277 RQV--DGMTSISLCVNTEKTNVILGDEVVNLWGPGYITDYIGDVKYQISPLSFYQVNPAQ 334 Query: 196 NIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAA 254 +++ AL+ + + + +LYCG G SL LA+ +V EI ++ A+ N Sbjct: 335 TVKLYGTALEYAGLTGEETVWDLYCGIGTISLFLAQKAKKVYGVEIVPQAIEDARRNAKI 394 Query: 255 NHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV- 313 N I+NV+ AEE + K + I VDPPR G D + Sbjct: 395 NGIENVEFFVGKAEEVLPR-----------EFEEKQIYADVIVVDPPRKGCDEVCLDTIV 443 Query: 314 -QAYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLT 364 R++Y+SC+ TL ++++ L + VER+ D F + H+E +++ Sbjct: 444 KMGPKRVVYVSCDSATLGRDVKYLGERGFVVERVRGCDMFGGSGHVETVIMMQ 496 >UniRef50_A7VVD9 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVD9_9CLOT Length = 460 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 75/388 (19%), Positives = 150/388 (38%), Gaps = 47/388 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL- 59 Y+A+L K R++ + P V + ++ YR +A+ I D D Sbjct: 85 FRHISYKAELEAKRRRVEDAIQRIGGFDRFPVPPVVGAAKINRYRNKAQLPIGADRDGRG 144 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQI 108 + + + ++ P ++ Q + ++ + ++ +LRH + Sbjct: 145 IMGFYALHSHRIVPIEDCPLQPKMFAQAVASVKQWMEEYKVPVYHEESHSGLLRHLYLRE 204 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALR-------AQNLNVHLIGRATKTKI 161 + + +V L+ + + + LR+ L N + + + Sbjct: 205 ---ASATGALMVCLVGNGDELPHSGELVKRLREDLPCLESVVFNSNREKTNVILGKRCQA 261 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCG 220 +D I + L + + SF Q N + A + K D +L+LYCG Sbjct: 262 LWGKDGIVDHL----CGLSFFLSPLSFYQVNRDQAEILYRLAGEYASLQKEDTVLDLYCG 317 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G + +A +V+ E+ ++ A+ N N + N++ I + + Q + Sbjct: 318 TGTIGMTMASKAGKVIGVEVVPEAIEDAKANAVRNGVKNIEFICGDSAQAVQMLR----- 372 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ 338 + + + VDPPR G + + A +I+Y+SC+P TL ++L+ L + Sbjct: 373 -------KRGERPTVVVVDPPRKGCGLPVLEHIVEIAPRKIIYVSCDPATLARDLKLLVK 425 Query: 339 -THKVERLALFDQFPYTHHMECGVLLTA 365 + ++ LA D FP T H+E LL Sbjct: 426 AGYCLQTLAPVDLFPRTAHVETVALLEK 453 >UniRef50_Q8DPY7 Uncharacterized RNA methyltransferase spr0932 n=78 Tax=root RepID=Y932_STRR6 Length = 543 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 75/387 (19%), Positives = 155/387 (40%), Gaps = 46/387 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L Y QL K +++ + + + + YR +A+ + L Sbjct: 83 LGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAETLGMEHPVKYRNKAQVPVRRVNGVLE 142 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQID 109 F + + + + ++ F +I+Q++ A+ +R + ++R+ + + Sbjct: 143 TGFFRKNSHNLMPLEDFFIQDPVIDQVVVALRDLLRRFDLKPYDEKEQSGLIRNLVVRRG 202 Query: 110 YLTTLSNQAVVSLLYHKK-------LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIE 162 + S Q +V L+ + L ++ ++ + ++ N + + Sbjct: 203 H---YSGQIMVVLVTTRPKVFRVDQLIEQVIKQFPEIVSVMQNINDQNTNAIFGKEWRTL 259 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGN 221 QDYI +++ ++ +F Q N M ++ + A+D + K D+ ++ Y G Sbjct: 260 YGQDYITDQM----LGNDFQIAGLAFYQVNTEMAEKLYQTAIDFAELKKDDVVIDAYSGI 315 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G L++A++ V E+ +V ++ N N+I N + AE + Sbjct: 316 GTIGLSVAKHVKEVYGVELIPEAVENSKKNAQLNNISNAHYVCDTAENAMKNWL------ 369 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ- 338 Q I VDPPR GL K RI YISCN T+ ++++ + Sbjct: 370 ------KDGIQPTVILVDPPRKGLTESFIKASAQTGADRIAYISCNVATMARDIKLYQEL 423 Query: 339 THKVERLALFDQFPYTHHMECGVLLTA 365 ++++++ D FP THH+E LL+ Sbjct: 424 GYELKKVQPVDLFPQTHHVETVALLSK 450 >UniRef50_B1I245 RNA methyltransferase, TrmA family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I245_DESAP Length = 465 Score = 329 bits (845), Expect = 8e-89, Method: Composition-based stats. Identities = 78/395 (19%), Positives = 138/395 (34%), Gaps = 52/395 (13%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 HL Y QL K V+++ + + + + HYR +A F + D L Sbjct: 87 HLLHIDYPEQLRWKTVQVRDALTRLGGLGEVPVANTLGMNEPRHYRNKAHFHVSRDSGRL 146 Query: 60 YHIIFDQQTKSRIRVDS------FPAASELINQ-----------LMTAMIAGVRNNPVLR 102 + + + + L + LR Sbjct: 147 ALGFLARGSHRVTCFVDADGGSGCLLVQRDLLRVAARAAALLESLRVPLYDWETQRGYLR 206 Query: 103 HKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIG-------R 155 + L + + + ++ L+ ++ R+ AE L + + Sbjct: 207 NLLLR---RAAATGEIMLVLVTGRQNWPGEREFAERLTAEEPGVVSVIRNVNALETRELL 263 Query: 156 ATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-L 214 + ++ + I E L + +R SF Q N + E A + + + Sbjct: 264 GPENRVRAGEPAITEHL----GGLKFRIGPASFFQVNPEQAEKTYEIARLFAGLTGKETV 319 Query: 215 LELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAM 274 ++ Y G G +L LA V+ E +VA AQ N N I NV+ + A E+ Sbjct: 320 VDAYSGIGTIALFLASRAKSVIGFEALPAAVADAQENALRNGIKNVRFEQGAVEDLLPEW 379 Query: 275 NGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKN 332 + + + +DPPR G + + R++Y+SC P TL ++ Sbjct: 380 AA------------RGRRVDVAVLDPPRRGCGPAALEALGRLRPRRVVYVSCAPATLARD 427 Query: 333 LETLSQ-THKVERLALFDQFPYTHHMECGVLLTAK 366 L L++ V ++ D FP T H+EC V LT K Sbjct: 428 LGRLAELGFDVVKVQPVDMFPQTSHIECVVSLTRK 462 >UniRef50_Q7NGN4 Uncharacterized RNA methyltransferase gll3134 n=1 Tax=Gloeobacter violaceus RepID=Y3134_GLOVI Length = 457 Score = 329 bits (844), Expect = 9e-89, Method: Composition-based stats. Identities = 83/389 (21%), Positives = 147/389 (37%), Gaps = 52/389 (13%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 Y QL K +++ + + P + + YR ++ F I D Sbjct: 92 QWQWIDYPFQLEAKQRQVREALEHLGGFAEPPVEPVIAQPRPFGYRNKSTFPIGRDARGE 151 Query: 60 YHIIFDQQ-TKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQ 107 I + Q+ + + +D+ P ++ L+ A +R + LRH + Sbjct: 152 PVIGYYQKDSHRIVPLDACPVQDSRLDPLLAAARELIRTQGWSIYDEKHHRGALRHLGLR 211 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALR-------AQNLNVHLIGRATKTK 160 I T Q +++ + + + + A+AL D + +T+ Sbjct: 212 IGERT---GQRLLTFVVNGQTLSGIKPAAQALMDRFADLVGVCLNTHTERGNTIFGPQTR 268 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYC 219 QD+I+E L +R +F Q + + + +++ YC Sbjct: 269 CLAGQDFIEEVL----DGFRFRIEPTTFFQICTSQAEILARLVARGADATAEQTVVDAYC 324 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G SL LAR V+ E SV A+ N N I+N + + E + Sbjct: 325 GIGTLSLPLARAARAVVGIESHVRSVEQARQNARINGIENCRFLAGTVEALLPDL----- 379 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKM-VQAYP-RILYISCNPETLCKNLETL- 336 + + + VDPPR G D E + + A P R++Y+SCNP TL ++L+ L Sbjct: 380 ------------RADIVVVDPPRKGCDPEVLEAILHAVPMRVVYVSCNPATLARDLKRLV 427 Query: 337 SQTHKVERLALFDQFPYTHHMECGVLLTA 365 + + + + D F THH+EC L Sbjct: 428 AGGYCLVGVQPVDLFAQTHHVECVATLER 456 >UniRef50_Q892Z2 Uncharacterized RNA methyltransferase CTC_01941 n=40 Tax=Clostridia RepID=Y1941_CLOTE Length = 456 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 80/391 (20%), Positives = 150/391 (38%), Gaps = 53/391 (13%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFS----DLVPEVFRSPVSHYRMRAEFRIW--HDGDDLY 60 YE QL K + + + D +P YR + EF G +L Sbjct: 85 QDIPYEKQLEIKQHEILELFKKANLDGFDFLPIEGSPKQYEYRNKMEFTFGDLKKGGELN 144 Query: 61 HIIFDQQ-TKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQI 108 + + + I D E ++ A + R LR+ + + Sbjct: 145 LGMHAKGMSFGIISADECKIVDEDYRNILNATLNYFREKQLPHYRIMAREGYLRNLVIR- 203 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAE---------ALRDALRAQNLNVHLIGRATKT 159 + + +V+L+ ++D + E L L N ++ + + K Sbjct: 204 --KAENTGEVLVNLVTTSQIDFNLDEYTEIIKSINYKGNLVGILHTINDSLSDVVQCDKL 261 Query: 160 KIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT-KGSKGDLLELY 218 I +DYI E + ++ SF Q N+ ++ D + + +LY Sbjct: 262 NILYGRDYIIE----DLLGLKFKITPLSFFQTNSKGAEKLYSIVRDFIGESKSKTVFDLY 317 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 CG G +A +V+ E+ + +V +A+ N N+++N + I + + + Sbjct: 318 CGTGTIGQIVAPEAKKVIGIELIEEAVESARENAKLNNLNNCEFIAGDIAQVIKEV---- 373 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETL 336 + + I +DPPR G+ + + V + P I+Y+SCNP+TL ++L+ L Sbjct: 374 -----------KQKPDVIILDPPRPGVHPKALEYVIKFDSPTIVYVSCNPKTLVEDLKVL 422 Query: 337 -SQTHKVERLALFDQFPYTHHMECGVLLTAK 366 + +E++ D FP T H+E V L K Sbjct: 423 VENGYVIEKVKGMDMFPSTPHVETVVGLRRK 453 >UniRef50_A8HPV8 tRNA (Uracil-5-)-methyltransferase (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8HPV8_CHLRE Length = 364 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 167/368 (45%), Positives = 235/368 (63%), Gaps = 13/368 (3%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 + E Y+ QL K+ +L+ + F EVF SP +HYRMR+EF + L+ Sbjct: 3 IDAEDYDGQLDRKLTKLKQLFQEFDPPQLEVFTSPPTHYRMRSEFTVEQRDGPLHFKGGK 62 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 + R+RVD+FP A++ +N+LM + P LR +LFQ+++ TTL+ A+V+LLYH Sbjct: 63 PKGPRRVRVDTFPVATKQVNELMAVVREEADKTPELRQRLFQVNFHTTLAGDAMVTLLYH 122 Query: 126 KKLDDEWRQEAEALRD------ALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 +KL EW+ AE LRD A + H+IGR+ K KI LD D++ ERL V G+ Sbjct: 123 RKLGPEWQAAAERLRDALAATPTAAAAGVRPHVIGRSRKQKIALDADFVLERLTVGGRTF 182 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATE 239 + +QVE SF+QPN + ML WA D DLLELYCGNGNF++ L+ NF RV+ATE Sbjct: 183 VQKQVEGSFSQPNGHVCQHMLTWAQD------DDLLELYCGNGNFTIPLSANFRRVVATE 236 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID-LKSYQCETIFV 298 +AK SV AA+YN+ AN + NV + RMA+EEF M RL+G++ ++ + TI V Sbjct: 237 VAKSSVEAARYNMEANGVSNVFLARMASEEFAVTMRERGSRRRLEGLEGWEALRLRTILV 296 Query: 299 DPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHME 358 DPPR+GLD T ++++ + RI+YISCNP+TLC NL+ ++ TH++ R A FDQFPYTHH+E Sbjct: 297 DPPRAGLDDFTVELLKEFDRIVYISCNPDTLCANLKAIAPTHRIARFAAFDQFPYTHHLE 356 Query: 359 CGVLLTAK 366 CGV L + Sbjct: 357 CGVYLVRR 364 >UniRef50_A5EXH9 tRNA (uracil-5-)-methyltransferase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=TRMA_DICNV Length = 361 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 170/366 (46%), Positives = 238/366 (65%), Gaps = 10/366 (2%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 + Y+ QL K +L +++ PFS ++ SP HYRMRAEFRIW D + L++ + Sbjct: 1 MTMSNYQRQLFAKHQQLHALLRPFSAPKIRIYPSPEKHYRMRAEFRIWRDDEQLFYAMSR 60 Query: 66 QQT---KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSL 122 ++ +R+ +FP A I++ M ++ +R +PVL HKL+++ +L +L + +VSL Sbjct: 61 GGALTAQNIVRLHNFPPAYITIDRCMPLLLDALRADPVLHHKLYEVHFLASLRGELLVSL 120 Query: 123 LYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYR 182 +YH+ L DEW A+AL + LIGR+ K KI L++D+I E L V G+ Y Sbjct: 121 IYHRALTDEWTAAAKALAKRFH-----ILLIGRSRKQKITLERDFILETLNVDGRAFHYH 175 Query: 183 QVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAK 242 Q E SF+QPNA + +ML WA + GDLLELYCGNGNF+L LA +F RVLATEI+K Sbjct: 176 QYEQSFSQPNAYVCQKMLRWACAQAGENAGDLLELYCGNGNFTLPLASHFRRVLATEISK 235 Query: 243 PSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL--QGIDLKSYQCETIFVDP 300 S+ A Q NI N +N+ + R++AEEFTQA R+F RL GI+L YQ ET+FVDP Sbjct: 236 SSITALQENIFLNQTNNIAVARLSAEEFTQAWQKERDFYRLKQAGIELADYQFETVFVDP 295 Query: 301 PRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECG 360 PR+G+D T ++Q +P+I+YISCNP TL NL+TL+QTH++ ALFDQFP T H+ECG Sbjct: 296 PRAGIDDNTLFLLQKFPKIIYISCNPHTLAANLQTLTQTHELCAAALFDQFPDTPHIECG 355 Query: 361 VLLTAK 366 V+L K Sbjct: 356 VVLRKK 361 >UniRef50_B0MMX5 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMX5_9FIRM Length = 383 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 80/385 (20%), Positives = 151/385 (39%), Gaps = 42/385 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH-II 63 L YE QL K + ++ F + + +YR + + D + + Sbjct: 16 QLSNMTYEQQLEWKQKDTEKLLGSFGKVSEIIGADDPYNYRNKVQAVFRSDRNGRIISGV 75 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQIDYLT 112 + + +DS + ++++ + +R+ LRH L ++ T Sbjct: 76 YQSSRNGIVGIDSCMLDDKRADEIIVGIRDLLRSFKLHPYDEGTERGFLRHVLVRVGKNT 135 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR-------ATKTKIELDQ 165 + +V+L+ + + +AL + R ++ + Sbjct: 136 ---GEILVTLVGGNSMFPKKHDFVKALVKRFPDITTVTFSVNRTPEMLLLGENNEVLYGE 192 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNF 224 YI + L +R +SF Q N A ++ ++A+ K +K D+L + Y G G Sbjct: 193 GYITDIL----CGKRFRISPHSFYQINHAQTEKLYDYAIKAAKLTKKDVLLDAYSGIGTI 248 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAMNGVREFNRL 283 + + +V E +V A N N + N+ R A EF + + Sbjct: 249 GIIASDYVKQVQGIEYNASAVRDAVKNCHENGLTRNIAFNRGDAGEFLEKKAKL------ 302 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTHK 341 + + +DP R+G D + + A RI+YISCNP T ++L+TL++ + Sbjct: 303 ------GTHYDAVILDPARTGADRKFLNSLVKIAPERIVYISCNPATQARDLKTLTKKYT 356 Query: 342 VERLALFDQFPYTHHMECGVLLTAK 366 V + FD FP+T H+EC V ++ K Sbjct: 357 VTDIQPFDMFPHTRHVECVVSMSRK 381 >UniRef50_A4SRV1 RNA methyltransferase n=3 Tax=Aeromonadaceae RepID=A4SRV1_AERS4 Length = 456 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 71/384 (18%), Positives = 147/384 (38%), Gaps = 43/384 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS----DLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 + Y AQL K +QS + + P + YR +A++ + Sbjct: 87 QVRPLAYPAQLKLKQALVQSALEQAGLGNTTVNPILGMESPFAYRNKAQYAVRGCEAGAE 146 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQID 109 + + + I D L +L + +R + +R+ + + Sbjct: 147 IGFYRKHSHDLITADDCAVQDSLHVELNARVRNWMREHDIAAYDEVNHTGCVRNLMTRKG 206 Query: 110 YLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDA-----LRAQNLNVHLIGRATKTKIELD 164 + + + +V L+ + + L D ++ N ++ L Sbjct: 207 FKS---GELMVVLVTLGEALPFEAELLATLSDLPITTLVQNINDERTNRILGANNRVLLG 263 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGN 223 + I +++ + + SF Q N + AL+ + + + + ++YCG G Sbjct: 264 EGVIRDKIHE----LEFEISPLSFFQNNPTQTDVLYSSALEYAELTGNETVFDIYCGIGT 319 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 SL LA +V+ E + +++ A+ N A N I++ + AE+ + Sbjct: 320 ISLFLAGKAAKVVGIESVESAISDARRNAALNGIEHTEFHVGKAEQLMPELYA------- 372 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTH 340 + + + +DPPR G D + + A R++Y+SCNP+TL ++L L Q Sbjct: 373 -----QGVTADVVVMDPPRKGCDKAVLQTLVAMAPRRLVYVSCNPQTLARDLAWLVKQGF 427 Query: 341 KVERLALFDQFPYTHHMECGVLLT 364 ++ + D FP++ H+E L+ Sbjct: 428 MLDEVQPVDMFPHSMHVEAVARLS 451 >UniRef50_A8EWU8 tRNA (uracil-5-)-methyltransferase n=3 Tax=Campylobacterales RepID=TRMA_ARCB4 Length = 375 Score = 328 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 153/365 (41%), Positives = 241/365 (66%), Gaps = 11/365 (3%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDD-----LY 60 L + YE QL K+ R + + F+++ ++ +S S++R RAEFRIW + + L Sbjct: 14 LFDKTYEEQLNYKIQREKERFSNFTNIDFDIIKSNESNFRNRAEFRIWWEKGENNKEILS 73 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 + + D + K+ ++++S S I +LM +I ++N+ L KLF +++L + + +V Sbjct: 74 YAMNDFK-KNILKINSCEMVSFHIKELMPKLIDELQNDLELSFKLFAVEFLGSSTKDMLV 132 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI 180 +L+YHKKL++ W Q+A+ + L N+ +IGR+ K ++ L DYI+E L ++ + Sbjct: 133 TLIYHKKLEESWIQKAKEIEKKL-----NIKIIGRSKKQRLVLTNDYINETLNISNQNFF 187 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEI 240 + EN FTQPN +N+QM+EW L+ TK S DL ELYCG GNF++ L+ F +VLATEI Sbjct: 188 FAYEENGFTQPNTNVNVQMIEWVLENTKNSSKDLCELYCGGGNFTIPLSTKFRKVLATEI 247 Query: 241 AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP 300 +K S+ +A N + N I+++ IRM+AE+F QA+N VR FNRL+ I+L Y+ +TIF+DP Sbjct: 248 SKTSIKSALRNCSLNKIESISFIRMSAEDFVQALNKVRAFNRLKDINLDDYEFDTIFMDP 307 Query: 301 PRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECG 360 PRSGLD T + + + I+YISCNPETL ++LE L++TH++E+ ALFDQF +T+H+E G Sbjct: 308 PRSGLDDTTRNLAKDFENIIYISCNPETLHRDLEELTKTHEIEKFALFDQFAFTNHIESG 367 Query: 361 VLLTA 365 V+L Sbjct: 368 VILRK 372 >UniRef50_Q31JA4 tRNA (uracil-5-)-methyltransferase n=5 Tax=Proteobacteria RepID=TRMA_THICR Length = 374 Score = 328 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 188/376 (50%), Positives = 239/376 (63%), Gaps = 21/376 (5%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIF 64 E Y Q AEK RL+ ++ + F S HYR RAEFR+WH+GD +I+F Sbjct: 4 QTYPETYAEQFAEKTHRLEQLLGDLPNFDA--FASEPEHYRARAEFRVWHEGDQTDYIMF 61 Query: 65 DQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLY 124 DQQ+K ++ + P A E I LM ++A + PVLR KLFQ+D+L TLS + +V+L+Y Sbjct: 62 DQQSKEKVAIHHCPMALESIATLMPKLMAHIVQTPVLRQKLFQVDFLATLSGEMLVTLIY 121 Query: 125 HKKL----------DDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPV 174 K L D W A ALR L H+IGRA K KI LD+DY+ E+L V Sbjct: 122 RKSLQTKTETGVENDVAWVDAANALRCELPIT----HIIGRARKQKICLDKDYVIEKLQV 177 Query: 175 AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT----KGSKGDLLELYCGNGNFSLALAR 230 + IY+Q+ENSFTQPNA M ML WA V + DL+ELYCGNG+FS+AL+ Sbjct: 178 DHQTFIYQQIENSFTQPNAEMAQNMLHWARKVAAKANPDQQNDLIELYCGNGHFSIALSD 237 Query: 231 NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 290 F RVLATEI+K SVA+AQ+NI AN +DNV +++MAAEE + A+ G F RL+ IDL + Sbjct: 238 QFHRVLATEISKTSVASAQFNIEANKVDNVTVVKMAAEEISAALQG-ETFFRLKDIDLSA 296 Query: 291 YQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQ 350 Y TIFVDPPRSGLD T +MV + I+YISCNPETL +LE + QTH+V ALFDQ Sbjct: 297 YAFNTIFVDPPRSGLDDLTRQMVTEFDYIIYISCNPETLAHDLEAIRQTHEVLETALFDQ 356 Query: 351 FPYTHHMECGVLLTAK 366 FPYTHH+E GV L K Sbjct: 357 FPYTHHIESGVFLKRK 372 >UniRef50_A8SWR8 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SWR8_9FIRM Length = 495 Score = 327 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 154/384 (40%), Gaps = 42/384 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH-II 63 YE QLAEK + +++ F + + HYR + + Sbjct: 120 QYVDMPYEQQLAEKQKYIDDLLSVFGPVDKIIGMENPYHYRNKVTAAFRRMKSGEIISGV 179 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQIDYLT 112 +++ T + + V++ E ++ +++ ++RH ++ T Sbjct: 180 YEEGTHNILPVENCYVEDEKAAAIIRTFAGLIKSFKLQIYNEDTGTGLIRHLQIRVGRKT 239 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDA-------LRAQNLNVHLIGRATKTKIELDQ 165 Q +V ++ + + A+AL A ++ N+ + + ++ + Sbjct: 240 ---GQIMVIIVTASPVFPSKKNLAKALVTAHPEITTVVQNINMKDTSMVIGDRNQVVYGK 296 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNF 224 YI++ L +R SF Q N + A+ K + +++ YCG G Sbjct: 297 GYIEDIL----CGKRFRISPGSFYQVNPEQTEVLYGKAIKYADLKKKETVIDAYCGIGTI 352 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 +A + +V+ E+ + +V A+ N+ N I NV I A F + Sbjct: 353 GIAASDRAKKVIGVELNEAAVHDARVNVKMNKIQNVDIYSNDAGRFMVDVAD-------- 404 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THK 341 + + +F+DPPRSG E V R++YISC PE+L ++L+ +++ ++ Sbjct: 405 ----EGDSIDVVFMDPPRSGSTEEFMSSVITLGPKRVVYISCGPESLARDLKYMTKHGYQ 460 Query: 342 VERLALFDQFPYTHHMECGVLLTA 365 V R+ D FP T +E VLLT Sbjct: 461 VIRMTPVDMFPLTRGVETVVLLTR 484 >UniRef50_B4WRD2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRD2_9SYNE Length = 483 Score = 327 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 149/389 (38%), Gaps = 51/389 (13%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDG-DD 58 YE QLA K + +A + P + YR +A + + D Sbjct: 116 QWQQVNYEEQLAAKHRLVVDALARIGKLSNVRVDPVLAAEEQLGYRNKATYPLGLSPTKD 175 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQ 107 + + + + + ++ P E ++ L+ A+ ++ + ++H + Sbjct: 176 VKAGYYQKGSHRLVNLNQCPVQDERLDPLLAAVKKDIQAREWKIYDERSHKGHIKHLALR 235 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRD-------ALRAQNLNVHLIGRATKTK 160 I T Q +V+L+ ++A+ + L N +T Sbjct: 236 IGRRT---GQILVTLVSRSTKLKGIHEQAQQWMERYPEVVGVLVNLNWKKTNAIFGPETF 292 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYC 219 + Y++E+ + + +F Q N ++L+ + +++ + YC Sbjct: 293 LIAGSSYLEEKFA----NLTFHIQPATFFQVNTTQAERLLDEIQTELALTGDEVIVDAYC 348 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G F+L LAR + + E + SV AQ N A N I+NV + Sbjct: 349 GVGTFTLPLARQVKQCIGLESSTESVVQAQENAALNGIENVGFRIGDVAALLPDL----- 403 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLS 337 + + + +DPPR G + + + RI+Y+SCNP TL ++L LS Sbjct: 404 ----------DVKPDILLLDPPRKGCELAVLESIVAIKPKRIVYVSCNPATLARDLRVLS 453 Query: 338 Q--THKVERLALFDQFPYTHHMECGVLLT 364 + ++V R+ D FP T H+EC V L Sbjct: 454 ETGGYRVTRVQPADFFPQTAHVECAVFLE 482 >UniRef50_C4Z8C9 RNA methyltransferase n=6 Tax=Clostridiales RepID=C4Z8C9_EUBR3 Length = 418 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 151/382 (39%), Gaps = 42/382 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHII-F 64 +Y+ QL K ++ ++ PF + P V +YR + + Sbjct: 52 YQGVEYKEQLKTKQAYMKKLLKPFCFVEPIVGMKNPLYYRHKVHAAFDCTRRGQIVAGAY 111 Query: 65 DQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQIDYLTT 113 + T + ++S + ++++ + +R+ +LRH L + Y T Sbjct: 112 RKNTHDVVDIESCMIEEQESDEIIRDIKDMLRSFRIKTYDEDTGYGLLRHVLVRKGYAT- 170 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALR-------DALRAQNLNVHLIGRATKTKIELDQD 166 Q +V L+ + +ALR + N + + + Sbjct: 171 --GQIMVVLVLASPILPSKNNFVKALRKKHPNITTVVLNVNDKKTSMVLGDRNITLYGKG 228 Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFS 225 +I+++L +R SF Q N + E A+ + +++ YCG G Sbjct: 229 FIEDKL----CGCTFRISPGSFYQVNPVQTELLYEKAIHEAHLTGKERIIDAYCGTGTIG 284 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 + A+N V+ E+ + ++ A N N I N++ A +F M Sbjct: 285 IIAAKNAGEVIGVELNRDAIRDAVINAKRNDIRNIRFYNDDAGKFMVEMAQ--------- 335 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKV 342 K + + + +DPPR+G D V + R++Y+SC PETL ++L+ L++ + V Sbjct: 336 ---KGEKADVVIMDPPRTGSDEAFLSSVVKLSPERVVYVSCGPETLARDLKYLTKHGYTV 392 Query: 343 ERLALFDQFPYTHHMECGVLLT 364 +R +D FP+T H+E LT Sbjct: 393 KRATPYDCFPFTSHIETVCCLT 414 >UniRef50_C6RGK1 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Campylobacter showae RM3277 RepID=C6RGK1_9PROT Length = 377 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 136/363 (37%), Positives = 208/363 (57%), Gaps = 9/363 (2%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHD----GDDLYHII 63 YE Q+ K ++ PF E F S + YR RAEF IWHD DL + + Sbjct: 18 DMPYEEQVKFKTDFIRREFEPFYSGEFEFFASQSAAYRTRAEFGIWHDIWHSAVDLAYTM 77 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLL 123 +TK + +D P + I LM ++ + N +L+ +LF ++++ S + +LL Sbjct: 78 HGAKTKRIM-IDECPKVAAPIANLMPRLLEALAKNQILKERLFGAEFISCASG-ILATLL 135 Query: 124 YHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQ 183 YHK+L + + E E+L AL+ +L V + RA K+ + + + L + GK + Sbjct: 136 YHKRLGEAEQSEIESL--ALKFADLRVTIAARAKGQKLLSGELNLQDSLNIGGKIYKFTF 193 Query: 184 VENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKP 243 + +F QPN A+N +M+ WA + DLLELYCG+GNF++ ++ F RVLATEI+K Sbjct: 194 GDGAFIQPNTAVNEKMIAWAKRCVE-RGADLLELYCGHGNFTVPMSEKFKRVLATEISKS 252 Query: 244 SVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 303 S+A A N N ++N++ +RM+AEE A REFNRL+ +D+ SY + VDPPR+ Sbjct: 253 SIANALKNCELNGVNNIEFLRMSAEELMSAFRREREFNRLRELDIFSYDFSHVLVDPPRA 312 Query: 304 GLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLL 363 GLD ++ Y I+YISC+P++L ++L L+ TH+ + A+FDQF T H+ECGVLL Sbjct: 313 GLDESVINFIKNYENIIYISCSPQSLKRDLTQLAATHEAVKFAVFDQFANTTHIECGVLL 372 Query: 364 TAK 366 K Sbjct: 373 KGK 375 >UniRef50_Q03VV3 tRNA (Uracil-5-)-methyltransferase related enzyme n=18 Tax=Firmicutes RepID=Q03VV3_LEUMM Length = 464 Score = 326 bits (837), Expect = 7e-88, Method: Composition-based stats. Identities = 74/387 (19%), Positives = 152/387 (39%), Gaps = 45/387 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS---DLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 L +YEAQLA K +++ + + D+ P + + YR +A+ + L Sbjct: 94 PLANLKYEAQLAFKQHQIEELFKKVNVDVDVAPTIGMENPTGYRNKAQVPVQMINGKLET 153 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDY 110 + + + + ++ F +++ + +R V+RH + + Y Sbjct: 154 GFYRRGSHRLVPIEDFYIQDPKVDEAVRITRDILRELGVSAYEEETKKGVIRHIMARRGY 213 Query: 111 LTTLSNQAVVSLLYHKK-------LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL 163 + + +V ++ + K + ++ + L+ + N + + + Sbjct: 214 YSH---ELMVVIITNTKKLPNSDLIAEKLSAKLPELKSVIHNINNHDTNVIMGQWNETIW 270 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNG 222 +D I ++L + NSF Q N + A + D++ + Y G G Sbjct: 271 GEDDIHDQLM----GKDFVIGPNSFYQVNPQTTSTLYALAAEKANLKPTDVVVDAYSGIG 326 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 +L++A ++ ++ + ++ A+ N N I N + + A E Sbjct: 327 TITLSVADKVKKIYGVDVVEGAIEDAEKNAKNNQITNAEFVLADAPEQMAKWAD------ 380 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNL-ETLSQT 339 + + +FVDPPR GL E V+A + +YISCNP TL ++ + L+ Sbjct: 381 ------EGLKPNVVFVDPPRKGLTQELIDAVKAMNPEKFVYISCNPATLARDAVQILAAG 434 Query: 340 HKVE-RLALFDQFPYTHHMECGVLLTA 365 ++E + DQFP T H+E + Sbjct: 435 FEIEGAVQPLDQFPQTTHVESITVFKK 461 >UniRef50_B9D5E5 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Campylobacter rectus RM3267 RepID=B9D5E5_WOLRE Length = 374 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 132/359 (36%), Positives = 202/359 (56%), Gaps = 5/359 (1%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQ 67 YE Q+ K ++ PF E F S + YR RAEF IW +G++L + + + Sbjct: 18 DAPYEEQVEFKKGFIRREFEPFYSGEFEFFASQKAGYRTRAEFGIWREGEELSYTMHGAK 77 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK 127 K +D P + I LM ++ + N +L+ KLF ++++ S + +LLYHK Sbjct: 78 AKRVF-IDECPKVAAPIANLMPRLLGALVKNQILKEKLFGAEFISCASG-ILATLLYHKH 135 Query: 128 LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENS 187 L + E E+L V + RA K+ + + +RL + K + + + Sbjct: 136 LGKAEQGEIESLAREF--VGHRVTIAARAKGQKLLSGELNLQDRLNIGDKIYKFTFGDGA 193 Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAA 247 F QPN A+N +M+ WA + DLLELYCG+GNF++A+A F RVLATEI+K S+A Sbjct: 194 FIQPNTAVNEKMIAWAKGCVE-RGADLLELYCGHGNFTVAMAEKFKRVLATEISKSSIAN 252 Query: 248 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDS 307 A N N ++N++ +RM+AEE A REFNRL+ +D+ SY + VDPPR+GLD+ Sbjct: 253 ALKNCELNGVNNIKFLRMSAEELISAFGREREFNRLRELDIFSYDFSHVLVDPPRAGLDA 312 Query: 308 ETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++ Y I+YISC+P++L +++ L TH+ + A+FDQF T H+ECGVLL +K Sbjct: 313 SVINFIKNYENIVYISCSPQSLKRDMAQLDATHEAVKFAVFDQFANTAHIECGVLLRSK 371 >UniRef50_B1C3C0 Putative uncharacterized protein n=4 Tax=Bacteria RepID=B1C3C0_9FIRM Length = 449 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 153/383 (39%), Gaps = 39/383 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV----FRSPVSHYRMRAEFRIWHDGDDLY 60 L E Q+ K R++ + + EV +YR + + I G+ L Sbjct: 81 QLQHLNQEGQMLFKTKRVKDCLERIGNCFVEVNDCLMMEDPWYYRNKVQMPIGVKGNRLV 140 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAG-----------VRNNPVLRHKLFQID 109 + Q++ I D ++L NQ+ + + + ++H L + Sbjct: 141 TGFYKQKSNEIIPCDECFIQNKLSNQITKRVKELMEKYKIYPYDKLSHQGNIKHILTKHG 200 Query: 110 YLTTLSNQAVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ 165 Y + ++S + KL E +E ++ ++ N + + K I Sbjct: 201 YHSNEIMLVLISYLDKINNVDKLVAEITKEFSMIKTVIQNINHRIDNVILGDKEIILFGD 260 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNF 224 +I + L + Y+ SF Q N ++ + A++ K S D+ L+ YCG G Sbjct: 261 GFIYDNL----LDNRYKISLKSFYQVNPIQVEKLYQKAIEFAKLSNDDVVLDAYCGIGTI 316 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 +L+LA+ +V EI ++ A+ N N I+NV+ A ++ + Sbjct: 317 ALSLAKYVKKVYGVEIVDTAINDARNNAKLNKIENVEFKCDDAGKYMIELVNNN------ 370 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THK 341 + +FVDPPR G E + +I+YISC+ T ++++ L + ++ Sbjct: 371 ------IHLDVVFVDPPRKGCSKEFLDYLIQAKPSKIIYISCDVATQARDIKYLQEFNYQ 424 Query: 342 VERLALFDQFPYTHHMECGVLLT 364 V+ D FP+T H+E + L Sbjct: 425 VDMCQPVDMFPHTTHIENIIRLE 447 >UniRef50_A8YU02 RNA methyltransferase n=15 Tax=Lactobacillus RepID=A8YU02_LACH4 Length = 450 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 147/385 (38%), Gaps = 44/385 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVF----RSPVSHYRMRAEFRIWHDGDDLYH 61 L +Y+ QL K ++ +++ EV YR +A+ + L Sbjct: 82 LAHIKYDKQLDFKRNQVVNLLKKAHLENIEVGETLASPEEVGYRNKAQVPVREVNGQLEI 141 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDY 110 F + + + + F I++++ A+ +R NN +R+ + Sbjct: 142 GFFRRHSHDLMPLTHFFTTDPEIDRVLVAVRDILRKYKVPAYDEINNNGEVRYLEVR--- 198 Query: 111 LTTLSNQAVVSLLYHKKLDDEWRQEAEALRDA------LRAQNLNVHLIGRATKTKIELD 164 + + + +V L+ K + A + + N + K + Sbjct: 199 RSKSTGEMMVILVCLHKDFMQLPNVAAEVSQIPGVSGLILNHNPKKTNVILGPKDYLVFG 258 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGN 223 D I +++ ++ +R SF Q N+ ++ A+ D+ ++ Y G G Sbjct: 259 NDQITDQI----GDLKFRISPQSFFQINSLQTPRLYNLAIKQADLKPDDVVIDAYSGIGT 314 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 L++A++ V E+ + ++ A+ N N I N + AEE Sbjct: 315 IGLSVAKHVKAVRGIEVVRDAIKDAKDNAKLNDITNAKYYLGKAEEIMPRW--------- 365 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTH 340 + + +FVDPPR GL E +I+YISCNP TL ++L+ +++ Sbjct: 366 ---AKSGLKTDVVFVDPPRKGLTPEFINAAVKTGPKKIVYISCNPATLVRDLQLFQEKSY 422 Query: 341 KVERLALFDQFPYTHHMECGVLLTA 365 + R+ D FP T H+E +L Sbjct: 423 EFNRIDPVDMFPQTPHVESVTVLER 447 >UniRef50_A5D234 SAM-dependent methyltransferases n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D234_PELTS Length = 470 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 80/396 (20%), Positives = 150/396 (37%), Gaps = 52/396 (13%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L Y QL K + ++ +A + L HYR + F++ D + Sbjct: 90 LQHINYGEQLMLKTILVKDSLARIAGLEKVKVRAAAGMEHPWHYRNKVHFQVEERPDKIA 149 Query: 61 HIIFDQQTKSR--------IRVDSFPAASELINQLMTAMIAGV---------------RN 97 +++ T + + +N+L + + R Sbjct: 150 LGFYEEGTHNLTAFFNEGACPGTGCLLVDDELNKLAALIEKLLNRHRGPFGRRILPQKRQ 209 Query: 98 NPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEA----EALRDALRAQNLNVHLI 153 + RH + + + T +V+ + + +E L +R N + Sbjct: 210 SRFFRHIVLRKGFFTGEVMAVLVTGSGEWPGEKAFVKELLSLRPGLVSLVRNINDGPPGV 269 Query: 154 GRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KG 212 K++ +++I +RL +I+R +SF Q N + + + + Sbjct: 270 LFGKKSRCLAGREHIKDRL----GHLIFRISPSSFYQVNPVQTLVLYNKVQQYAALTGRE 325 Query: 213 DLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ 272 +++ Y G G+ +L LA RV E +VA A+ N A N I N + + E Sbjct: 326 TVVDAYSGIGSIALFLAGRAKRVYGLEALPDAVADARKNAALNKITNAEFLTGKVESLIP 385 Query: 273 AMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLC 330 + + + E + +DPPR G E + V PR++Y+SCNP TL Sbjct: 386 ILAA------------QGQRPEVVVLDPPRHGCGREVLEAVVQMQVPRLVYVSCNPATLA 433 Query: 331 KNLETLS-QTHKVERLALFDQFPYTHHMECGVLLTA 365 ++L + + V+ + D FP+T H+EC VL++ Sbjct: 434 RDLRYFADNGYLVDEVQPVDMFPWTAHVECVVLMSR 469 >UniRef50_A6NRA8 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NRA8_9BACE Length = 412 Score = 324 bits (830), Expect = 5e-87, Method: Composition-based stats. Identities = 84/385 (21%), Positives = 154/385 (40%), Gaps = 42/385 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRI-WHDGDDLYHII 63 + + YE QL K +L+ ++ F + P + HYR + W G +L I Sbjct: 46 PMLSLPYEEQLKRKQAKLEELLGKFGPVAPILGMEHPWHYRNKVISSFAWGPGKNLVSGI 105 Query: 64 FDQQTKSRIRVDSFPAASELIN-----------QLMTAMIAGVRNNPVLRHKLFQIDYLT 112 + Q T + V+ E+++ + R ++RH L + + Sbjct: 106 YAQGTHRVVPVEQCLLHREVLDQAVAAVRQAAREFRYQPFDENRRTGLIRHVLCR---HS 162 Query: 113 TLSNQAVVSLLYHKKLDD-------EWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ 165 + + + L+ + ++ A+ + N + KI + Sbjct: 163 LSTGEVLAVLVTASPVLPGARAFAARVKELCPAIVTLAQNVNPRPGSAVLGDREKILYGR 222 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNF 224 YI++ L + +R +SF Q N + A+ + + +L+ YCG G Sbjct: 223 GYIEDVL----CGVKFRIAPSSFYQINPVQTEVLYSTAISAARLTGKERVLDAYCGVGTI 278 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 L+ A + V+ E+ + + A A N AN+I N + A F Sbjct: 279 GLSAAAHAGSVVGVELNRSAAACAVDNAKANNIRNARFRCGDAAAFL------------D 326 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETL-SQTHK 341 G+ + Q + +F+DPPR+G + + R +YISCNPET ++LE L ++ + Sbjct: 327 GMAARGEQLDVVFLDPPRAGSTPVFLDALCRVSPARAVYISCNPETQRRDLEYLAARGWR 386 Query: 342 VERLALFDQFPYTHHMECGVLLTAK 366 E + D FP+T H+E +LT + Sbjct: 387 AESIQGVDMFPHTEHIETVAVLTRR 411 >UniRef50_A6NR99 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NR99_9BACE Length = 454 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 152/383 (39%), Gaps = 38/383 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVF----RSPVSHYRMRAEFRIWHDGDDLY 60 Y +L K +R++ + + L V YR + +F + + Sbjct: 86 QFRQMNYAEELEAKRIRVEDCLQRIAGLDVTVPVIHGAKDTRRYRNKVQFPVQPGPEGPR 145 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-------LRHKLFQIDYLTT 113 + Q+T I V+ E +L A ++ ++ + + R + + Sbjct: 146 VGFYRQRTHQVISVEDCLLQPETAARLRAAAVSWMQWHNISAYDEKTGRGLVRHVYVRVN 205 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALRDA-------LRAQNLNVHLIGRATKTKIELDQD 166 + Q++V LL + K + +ALR+ + N + + + QD Sbjct: 206 RAGQSLVCLLVNGKSVPQEDALVQALRNVEPGLVGVVLGVNEKKNNVILGDSYRTLWGQD 265 Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFS 225 ++++ L +R SF Q NA + ALD + + +L+LYCG G S Sbjct: 266 WLEDTL----CGFTFRLSVPSFYQVNANQAEVLYGRALDFAGLTGRETVLDLYCGIGTIS 321 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 L +AR +V E+ +V A+ N N ++N + + + Sbjct: 322 LVMARQAGKVFGAEVVPQAVEDARENALRNGVNNAEFLCGD------------AGEAARA 369 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKV 342 + + + + + VDPPR GL + + A R++Y+SC+P TL ++++ + + Sbjct: 370 LAARGVKPDVVCVDPPRKGLAEDVVDTIVSMAPERVVYVSCDPATLARDVKRFVSLGYVL 429 Query: 343 ERLALFDQFPYTHHMECGVLLTA 365 + D FP T H+E VLLT Sbjct: 430 RKAEAVDMFPRTAHVESVVLLTR 452 >UniRef50_C8VZT5 RNA methyltransferase, TrmA family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZT5_DESAS Length = 458 Score = 323 bits (829), Expect = 6e-87, Method: Composition-based stats. Identities = 69/386 (17%), Positives = 143/386 (37%), Gaps = 41/386 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y QL K ++ + S ++P + +YR + + Sbjct: 88 QLQHSSYAEQLKLKEKFVRDNLKRISGLPDAVVLPTIGMENPWNYRNKIHLHAGRKNNRT 147 Query: 60 YHIIFDQQTKSRIRVDSF-PAASELINQLMTAMIAGVRN-----------NPVLRHKLFQ 107 F + + + + +N++ + + +LR + + Sbjct: 148 VLGFFSEGSHILVEGTACCQINDGRLNEISAILEDLINKYKLEPYNKHSKKGLLRGVMLR 207 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEA----EALRDALRAQNLNVHLIGRATKTKIEL 163 T +V++ + + +E + +R N + + + K+ Sbjct: 208 KAEATGQVMLVLVTVSGNLPGQSTFTRELVNQCPDITSIIRNINNGNNSLLLGSVNKLIW 267 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNG 222 ++ I +++ K++ + NSF Q N I++ + AL+ + +L+ YCG G Sbjct: 268 GKEIIVDKI----KDLSFYISANSFYQINPKQTIKLYDKALEYAELKGNETVLDAYCGIG 323 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 ++ + N +V E +V A+ N A N ++NV+ + E+ Sbjct: 324 TIAMYFSANARKVTGLESLNIAVKDARENAALNRLNNVEFLCGEVEKLLPEFAERNN--- 380 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQ-T 339 + I +DPPR G + + P+I+Y+SCNP TL ++L L + Sbjct: 381 ---------NVDIIILDPPRQGCKQVVLEAIAKMRIPKIIYVSCNPGTLARDLGLLDKLG 431 Query: 340 HKVERLALFDQFPYTHHMECGVLLTA 365 + + + D FP T H+E L+ Sbjct: 432 YGIIEVQPVDMFPQTSHIEICTFLSK 457 >UniRef50_A8ZZY9 RNA methyltransferase, TrmA family n=3 Tax=Desulfobacteraceae RepID=A8ZZY9_DESOH Length = 471 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 78/398 (19%), Positives = 141/398 (35%), Gaps = 56/398 (14%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L Y+ QL K ++ + + P + PV YR + EF L Sbjct: 92 LQILDYDKQLDCKHEQVADALRHIGLVENVPVHPVMPADPVWGYRNKMEFSFADRRWLLP 151 Query: 61 -------------HIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVR---------- 96 + T I VD+ E N ++ + A R Sbjct: 152 EEMEMENIDTSFALGLHVPGTFHKVIDVDACLLLPEPGNAILGDVRAYARASGVPAYGLK 211 Query: 97 -NNPVLRHKLFQIDYLTTLSNQAVVSL----LYHKKLDDEWRQEAEALRDALRAQNLNVH 151 + R + + +V+ + L D + + Sbjct: 212 SHQGFWRFLMLRHSVAHDNWMVNIVTAAEDRRLLQPLADLLADRYPEVVSVVNNITARKA 271 Query: 152 LIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS- 210 + + + +I +RL + NSF Q N ++ A + + Sbjct: 272 GVAQGEYEILLHGAPFISDRL----GRFSFDISANSFFQTNTRGAERLYTVAREYAGLTG 327 Query: 211 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF 270 +++LYCG G ++ L+ V+ EI +A A N N++ NV+ + +E Sbjct: 328 SQTVVDLYCGTGTIAIWLSGAAKEVIGLEINDSCLADAVNNCRTNNVSNVRFVAGDVKET 387 Query: 271 TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEK--MVQAYPRILYISCNPET 328 + + + + +DPPR+G+ + + + A PRI+Y+SCNP T Sbjct: 388 LPRL---------------DCRADVLVIDPPRAGMHKDVVEQVLAMAPPRIVYVSCNPAT 432 Query: 329 LCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 L +++ LS+ + V + D FP+T H+EC L K Sbjct: 433 LARDVAMLSEAYTVAEVQPVDMFPHTPHIECVARLDKK 470 >UniRef50_B9YBR7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBR7_9FIRM Length = 458 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 75/384 (19%), Positives = 148/384 (38%), Gaps = 42/384 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH-II 63 L Y AQL K ++Q ++ + + + + YR + I Sbjct: 91 QLQHVDYPAQLDWKKEKVQQLLGRYGRVHDVLGMAEPWAYRNKVIATFSLSKKGKVIAGI 150 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDYLT 112 +++ + + S + +++ + + + ++RH L ++ +++ Sbjct: 151 YEEDSHQLVAYSSCWIQDPIAEKILATVCELMTELRIEPYDEDQRTGLVRHCLIRVGHVS 210 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDALR-------AQNLNVHLIGRATKTKIELDQ 165 + +V L+ + +Q + LR N + ++ ++ + Sbjct: 211 R---EVLVCLVCASPIFPARKQLIQRLRQRHPEITTIVMNVNSRNTSVVLGSQERVLVGT 267 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNF 224 I + L + + SF Q N+ + A+++ + +L+ YCG G+ Sbjct: 268 GKIQDEL----CGLKFSIAAKSFYQINSVQTEVLYGKAMELANLTGKERVLDAYCGIGSI 323 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 SL A+ V+ E+ SV A N NH+ N + A F + Sbjct: 324 SLVAAKAAKEVVGVEVNPVSVTNAIENARMNHLRNAWFVEADAGLFMEQAAR-------- 375 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLS-QTHK 341 + + +F+DPPR+G D K + RI+YISCNP T ++L L+ + ++ Sbjct: 376 ----EGQAYDVVFMDPPRAGADERFLKSLCRLNPDRIVYISCNPSTQARDLRHLTHEGYQ 431 Query: 342 VERLALFDQFPYTHHMECGVLLTA 365 V + D FP T H+E VLL Sbjct: 432 VRTIVPVDLFPMTSHVETIVLLQR 455 >UniRef50_D1R4G9 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4G9_9CHLA Length = 449 Score = 322 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 143/387 (36%), Gaps = 50/387 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y QL K + + + + P V YR + + + D L Sbjct: 83 QLMHLGYPKQLEMKRQIVLNALERIGHLKNISIDPCVSSPQELEYRNKIQLPVMMKPDGL 142 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQI 108 ++ + + + I VD E + +++ ++ + VLRH L + Sbjct: 143 TVGLYARNSHTIIPVDHCLIHCEQGENVYQSVLKLLKQSDIAPYDERTGKGVLRHLLIKS 202 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIE------ 162 T+ S +V L+ ++ + A+ + A + I R I Sbjct: 203 ALQTSES---LVILVTSQEKCTSLQALAQQIMQACPEVKGVIQNINRKRDNVILGTDWHT 259 Query: 163 -LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKG-SKGDLLELYCG 220 + YI E + + + ++F Q N A + + L + L+ +CG Sbjct: 260 LAGKSYIREMI----CDHHFHISPSAFFQVNPAQAESIYQHVLSLADLDKTKTFLDAFCG 315 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G +L A + E ++ A N N I N AE Q++ Sbjct: 316 VGTMTLIAAGQAKECIGIECVPQAIEDANANAQLNQISNAVFYCDHAESKIQSLK----- 370 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ 338 + +F++PPR G + ++ ILY+SC+P TL ++L+ L Q Sbjct: 371 -----------DIDVVFLNPPRKGCEESLLNRLKIVKPETILYMSCDPATLARDLKILVQ 419 Query: 339 -THKVERLALFDQFPYTHHMECGVLLT 364 +++E++ FD FP T H+E V LT Sbjct: 420 HGYQIEQVTPFDMFPQTAHVETVVKLT 446 >UniRef50_B1N060 23S rRNA (Uracil-5-)-methyltransferase RumA n=7 Tax=Lactobacillales RepID=B1N060_LEUCK Length = 473 Score = 321 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 155/383 (40%), Gaps = 37/383 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS---DLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 L +YEAQL K +++ + + ++ P + + + YR +A+ + L Sbjct: 106 PLANLKYEAQLTFKQRQVEQLFKKVNVSVEVNPTIGMTDPTKYRNKAQVPVQMVNGQLET 165 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDY 110 + + + + V+ F +++ ++ +R + V+RH + + + Sbjct: 166 GFYRRGSHKLMPVEDFYIQDPKVDEAVSVTRDVLRDLGISAYDEETHKGVVRHIMARRGF 225 Query: 111 LTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD---Y 167 + + +V ++ + K E A ALR L +H I I + + Sbjct: 226 YSH---ELMVVIITNTKKLPEADNIAAALRAKLPELKSFIHNINNHDTNVIMGQWNETVW 282 Query: 168 IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSL 226 + + + NSF Q N + A + D++ + Y G G +L Sbjct: 283 GADEIHDQLMGKDFIIGPNSFYQINPQTTAVLYTLAAEKAGLKPTDVVVDAYSGIGTITL 342 Query: 227 ALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286 ++A +V E+ + +V A+ N NHIDNV+ + A E Sbjct: 343 SIADQVAKVYGVEVVEDAVLDAEKNAQNNHIDNVEFVTADAPEQMTQW------------ 390 Query: 287 DLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKN-LETLSQTHKVE 343 + + +FVDPPR GL +E V A +YISCNP TL ++ ++ L++ ++ Sbjct: 391 AADGLKPDVVFVDPPRKGLTNELISAVSAMQPKTFVYISCNPATLARDTVQILAEGFHID 450 Query: 344 R-LALFDQFPYTHHMECGVLLTA 365 + DQFP T H+E ++ Sbjct: 451 GPIQPIDQFPQTTHVESVLIFKR 473 >UniRef50_Q74D67 Uncharacterized RNA methyltransferase GSU1452 n=5 Tax=Geobacter RepID=Y1452_GEOSL Length = 495 Score = 321 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 151/385 (39%), Gaps = 38/385 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPF-----SDLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y QL K + + + ++++ + HYR A+ + Sbjct: 98 PLIVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLHYRNSAKLVVSGTFRRP 157 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQI 108 I+ + + + + + P LIN+++TA+ G+ + +LR+ + +I Sbjct: 158 VIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTGSGLLRYLVVRI 217 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYI 168 T A+ + ++ +E A+ L+ ++ + V + + I +DY Sbjct: 218 SERT---GTAMAVFVTVERNYNEIHHLAKHLQQSVPQVEVVVQNVNSSEGNVILGQRDYF 274 Query: 169 DER---LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNF 224 R L + + SF Q N+ + E + + + +++LYCG G Sbjct: 275 LTRQHALTEELGGIRFTISPRSFFQVNSGGARIIYETVRQWSSLTGKESVVDLYCGIGGI 334 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 +L LA V E+ + +V A+ N N I N A E + + Sbjct: 335 ALFLAGTAREVHGIEVVEAAVNDAESNARLNRIHNCSFEAGDAAELIEELVE-------- 386 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETLSQ-THK 341 + + + + ++PPR G D+ RI+Y+SC P TL ++L+ L+ + Sbjct: 387 ----EGERLDLVVLNPPRKGCDAGVLNKVAAAGPARIVYVSCAPATLARDLDILAGLGYA 442 Query: 342 VERLALFDQFPYTHHMECGVLLTAK 366 R+ D FP T H+E LL K Sbjct: 443 TLRVQPVDMFPQTPHVENIALLVKK 467 >UniRef50_B0MMY7 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMY7_9FIRM Length = 493 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 149/386 (38%), Gaps = 44/386 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFR----SPVSHYRMRAEFRIWHDGDD-LY 60 L YEAQL K ++ L PE + ++ YR + + I D D L Sbjct: 82 LRHISYEAQLRAKEQFVKDAFTRIGGLSPEFLPIIRNTNINGYRNKLQIPIGTDKDGNLI 141 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAM-----------IAGVRNNPVLRHKLFQID 109 + + + + ++ ++ + +LRH + Sbjct: 142 AGFYAFHSHRIVPCEKCLLQPDIFLKITADFLKISTGLNLTAYDETTHKGILRHLYLRKG 201 Query: 110 YLTTLSNQAVVSLLYHKK------LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL 163 Y S + + ++ K L D ++ + ++ N + + + Sbjct: 202 Y---YSGEICLCIVVAKNVPEIKILSDRLLEKYPEIVSSVINVNNRDTNVILGDEEIVLT 258 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGN 223 ++YI + + + +F Q N Q+ A D + +L+LYCG G Sbjct: 259 SKNYICDIM----CKNAVNIAPKAFYQVNTPCAEQLYSSACDFAEPKGKTVLDLYCGAGT 314 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 L++AR +++ EI ++ A+ N AN I N + I A E + ++ Sbjct: 315 IGLSMARTAKKIIGVEIVPEAIENAKQNALANGITNCEFICADAAEAARILHS------- 367 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ-TH 340 ++ + + I VDPPR G + + + A+ PRI+ +SCN T ++ ++ + Sbjct: 368 -----RNLRPDVIMVDPPRKGCGRDACEQIAAFSAPRIVMVSCNAATAARDCACFAELGY 422 Query: 341 KVERLALFDQFPYTHHMECGVLLTAK 366 ++ D F T+H+E VLL+ K Sbjct: 423 STDKCVAVDMFSGTNHVETVVLLSHK 448 >UniRef50_A4RUE5 Predicted protein n=8 Tax=cellular organisms RepID=A4RUE5_OSTLU Length = 418 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 168/375 (44%), Positives = 232/375 (61%), Gaps = 21/375 (5%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVP--EVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 Y+ +L EK ++ + L E F S +RMRAEF++WHDGD Y + D Sbjct: 48 PSSYDEELREKTAHARAHFDGVATLPSRTETFESAREEFRMRAEFKVWHDGDRSYFAMCD 107 Query: 66 Q-QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLY 124 + K + V FP AS I +LM ++ V LR KLFQ ++LTT + AVVSLLY Sbjct: 108 SDRPKDPVEVVDFPMASARIRELMPELLREVTATETLRRKLFQANFLTTTTGDAVVSLLY 167 Query: 125 HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQV 184 H++LD++W +EAEA+R L + +IGRA K K+ L +D++ E++ + GKE Y+Q+ Sbjct: 168 HRQLDEDWEREAEAMRARL-----GIDVIGRARKQKLVLAKDFVTEKVLIDGKEFSYKQL 222 Query: 185 ENSFTQPNAAMNIQMLEWALDVTKGSKGDL-------------LELYCGNGNFSLALARN 231 E SFTQPNA + QML WA D+ LELYCGNG+F++ALA Sbjct: 223 EGSFTQPNAGIAAQMLAWARSAAVSDSPDVVAAATPRDANRDFLELYCGNGHFTIALAPL 282 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY 291 F + LATEI+K SVAAA N+AAN IDNV R++AEE A++G RE+ RL+ IDL +Y Sbjct: 283 FRKCLATEISKSSVAAAHVNMAANGIDNVVTARLSAEELCDALDGGREYTRLKDIDLTTY 342 Query: 292 QCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQF 351 T+ VDPPR+G+ E K + RI+YISCNPETL ++ + L +TH+++R A+FDQF Sbjct: 343 DLSTVLVDPPRAGMGDEVSKFCARFDRIIYISCNPETLARDCKILGETHEIKRFAVFDQF 402 Query: 352 PYTHHMECGVLLTAK 366 PYT H+E G LL + Sbjct: 403 PYTPHLESGALLVKR 417 >UniRef50_B8FPA8 RNA methyltransferase, TrmA family n=2 Tax=Desulfitobacterium hafniense RepID=B8FPA8_DESHD Length = 446 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 69/372 (18%), Positives = 138/372 (37%), Gaps = 40/372 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-------PEVFRSPVSHYRMRAEFRIWHDGD 57 L Y L K ++ + + P + YR +A H G+ Sbjct: 96 QLQHLNYAQTLLWKKRWVEDALTRIGKIPLEKVKVHPTLGMDEPWRYRNKARL---HRGE 152 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-RNNPVLRHKLFQIDYLTTLSN 116 + +++K+ + SE +N+ + A + + + L L + + Sbjct: 153 GNTLGYYQEKSKATVPFTDCLLISESMNRWVREAEAILGQQDKNLFPDLNALTFRENSQG 212 Query: 117 QAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAG 176 + ++ L K + + + +V I + + + Q E Sbjct: 213 EGMLILDSLKDV------RQADVWSEMGGGTHSVWGINSSGEPERIAGQKEFTE----DV 262 Query: 177 KEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDRV 235 ++ +F Q N ++ LD + S + +LYCG G +LALA +V Sbjct: 263 LGARFKISPLAFLQVNPVQTRKLYNKVLDWAELSTEKVVWDLYCGIGTITLALAAKAKKV 322 Query: 236 LATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCET 295 E +V A+ N N ++NV+ + AE+ Q + Sbjct: 323 WGIEENPYAVEDARENAKRNRVNNVEFMVGKAEDTFQQI---------------GDYPHI 367 Query: 296 IFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFP 352 + +DPPR+G + + + +I+Y+SC+ TL ++L L ++V + D FP Sbjct: 368 VVLDPPRAGAHRKVLEGLLELKPEQIIYVSCDAGTLARDLGILQNGGYRVVEVQPVDMFP 427 Query: 353 YTHHMECGVLLT 364 +T +E +++T Sbjct: 428 WTVSVESIIVMT 439 >UniRef50_Q2RH77 RNA methyltransferase, TrmA family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RH77_MOOTA Length = 473 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 90/412 (21%), Positives = 139/412 (33%), Gaps = 75/412 (18%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L Y AQL K + + L P + + YR + + Sbjct: 79 LQHLDYRAQLHWKRRLVIDALQRLGHLRDIPVLPVLGMANPWGYRNKVRLHVRRG----R 134 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 + + P + + A A VR P L L + L+ ++ Sbjct: 135 LGFYRPGSHELAPFSCCPLLPPGL---LKAARAIVRLLPELPPGLQHVTLRQGLATGELL 191 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK-------------------- 160 +L R+ AE L V L G Sbjct: 192 VVLEALPGWQGDRELAEKLAGRFPELVGVVSLAGGGRSRSGPKDFAGEPALECSGWVKTG 251 Query: 161 -----------------------IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNI 197 +DY++ERL ++ + +F Q N+A Sbjct: 252 GKEARRARYQEGFVPRRLGGRPFTLYGRDYLEERL----GDLRFYISATTFFQVNSAQAE 307 Query: 198 QMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANH 256 + A G+ +L+ YCG+G +L L+R RV E+ ++ A+ N N+ Sbjct: 308 VLYNKAATFAGLQGGEEVLDAYCGSGAIALWLSRQAGRVEGVEVVPEAIVDARRNSILNN 367 Query: 257 IDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA- 315 + NV AAE + G K Y+ E I +DPPR+G D V Sbjct: 368 LANVHFRTGAAEAVLPRLAG------------KGYRPEVIILDPPRAGCDRRVLAAVATM 415 Query: 316 -YPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 R++YISCNP TL ++L L + K + D FP+THH+EC L Sbjct: 416 EPRRVVYISCNPSTLARDLAHLREAGFKPGPVQPVDMFPHTHHVECCCFLVK 467 >UniRef50_C6BYI0 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BYI0_DESAD Length = 465 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 157/387 (40%), Gaps = 41/387 (10%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLVPEVF-------RSPV-SHYRMRAEFRIWHDGDD 58 +Y AQ K ++ + + P+ SP+ YR + EF GD Sbjct: 90 QDIKYPAQTFWKGRQVCETLERIGKIGPDTPGMGEEALPSPLEYGYRNKMEFSFHGIGDS 149 Query: 59 LYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDY------- 110 L + + + + S P E + + + + ++ + Y Sbjct: 150 LKLGFKRRGSETDVLNISSCPLLPEQCADIPALVRDYCAHTNIGAYRHNRGGYWRKLVVR 209 Query: 111 LTTLSNQAVVSLLYH--------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIE 162 + S + ++ LL K L L+ + + + + Sbjct: 210 FSHHSGEMMIHLLTGPARSHHTIKGLGKLLFDNIPQLKSFVHSTRKGRADLATGERLISV 269 Query: 163 LDQDYIDERLPV-AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCG 220 Q++I E L G E+ YR N+F Q N+ + + ++ D+ +L+CG Sbjct: 270 TGQEHITETLTHADGSEVSYRITPNAFFQTNSKGAEVLYRKSSELAAPKADDVVWDLFCG 329 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 +G + +A++ +++ E+++ SV +A+ N A N ++N Q I Sbjct: 330 SGGIGMFMAKDVGKMIGIEVSEESVQSAKDNAALNGLENTQYIVGNLAS----------- 378 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGL-DSETEKMVQ-AYPRILYISCNPETLCKNLETLSQ 338 +G+ + + VDPPRSG+ D +K+++ +ILYISCNP TL ++ + Sbjct: 379 --EKGLPEDLPHPDMVIVDPPRSGVPDPSLQKLIELGPEKILYISCNPSTLARDAAKMEG 436 Query: 339 THKVERLALFDQFPYTHHMECGVLLTA 365 +K+ER A D FP+T H+E LLT Sbjct: 437 RYKLERFAAVDMFPHTAHVESIALLTK 463 >UniRef50_D1BA92 RNA methyltransferase, TrmA family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BA92_THEAS Length = 457 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 147/391 (37%), Gaps = 48/391 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y QL+ K +Q M + P YR +A + G Sbjct: 82 QLQHADYPLQLSMKRRVVQDAMRRIGGFEDPPVEPCEMSPLQWGYRNKAIVPVRSQGRGW 141 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV----------------RNNPVLRH 103 + + + + S P S+ IN++M + + R + LR Sbjct: 142 GMGFYRPFSHEVVPLRSCPVMSDEINRVMGLIRDFLEPRIRGGLLSPYREGDRPSGSLRE 201 Query: 104 KLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRA-QNLNVHLIGRATKTKIE 162 + + T + +VSL+ + + E L L + + + Sbjct: 202 VVVRHGMRT---GELLVSLVMRQDPRGRLLSDLEGLFRLLEGLGVVGLSVFRNRRDANFV 258 Query: 163 LDQDY----IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLEL 217 D D+ +R+ M SF Q N +M + +D+ + D+LEL Sbjct: 259 WDGDFAWGIGRDRMWEVLGGMRLSYDVTSFFQVNTHQAERMFQHVVDLLDETGARDVLEL 318 Query: 218 YCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 277 Y G G+ + +A RV+A E +V + N+ N I V + AAE+ + Sbjct: 319 YSGVGSLTGMIAAGGRRVVAVEEWPSAVEGLRENLQVNGIHGVTPLLGAAEDVLGDL--- 375 Query: 278 REFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLET 335 + + +DPPR G E + + A P ++Y+SCNP TL ++L Sbjct: 376 ------------GGDFQAVVLDPPRGGCHPEVIRAMVDAAVPHVIYVSCNPATLARDLML 423 Query: 336 LSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 LSQ + + R+ FD FP T H+EC L++ Sbjct: 424 LSQGGYVLRRVRPFDMFPQTCHVECVTLMSR 454 >UniRef50_Q30XV5 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XV5_DESDG Length = 457 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 65/388 (16%), Positives = 135/388 (34%), Gaps = 49/388 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGD-DL 59 Y QL K + ++P + +R + EF +D + Sbjct: 88 WQHMPYAMQLEWKQRLVHDAFVRIGRIAEPPVLPALASPAQRFFRNKMEFAFENDSPQGI 147 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQ--------IDYL 111 + + + I + S+ +++ ++ + + + Sbjct: 148 RLGLRARGSHDVINISECHLQSQRCVRIVDSVRRWAAQTGLTAWDVRSGEGFFRYLVIRE 207 Query: 112 TTLSNQAVVSLLYH-------------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATK 158 T + Q +V L+ ++L D + E + + + + A K Sbjct: 208 TLYTGQCMVQLITGPEKTGGNAGARAVRQLGDLLAESGEGITSFIHGERRSPVQAAYAEK 267 Query: 159 TKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELY 218 T ++ E+L + ++F Q N A + A D G G L +LY Sbjct: 268 TLYSTGDSHLTEQL----NGRTFTMAPHAFFQTNTAATEILSRTAADYA-GQGGVLWDLY 322 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 CG G L +A V E+++ +V A N + + + Sbjct: 323 CGVGTMGLGMADQVTSVTGMEVSEEAVQFATLNARNQQVPQARFLAGDVRRLLIR----- 377 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL 336 + + + DPPR+G+ + + +A +I+YISC+P T ++ L Sbjct: 378 ----------HKEKPDIVITDPPRAGMHPDVLSALISRAPRKIVYISCDPATQARDAAAL 427 Query: 337 SQTHKVERLALFDQFPYTHHMECGVLLT 364 + ++++E + D FP++ H+E L + Sbjct: 428 TDSYRLEAVQPVDMFPHSAHIESVALFS 455 >UniRef50_Q3A1Z9 RNA methyltransferase, TrmA family n=2 Tax=Desulfuromonadales RepID=Q3A1Z9_PELCD Length = 489 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 74/381 (19%), Positives = 153/381 (40%), Gaps = 34/381 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPF-----SDLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L + Y QL K +++ + + +D+ P + YR A+ + + Sbjct: 115 LMSMGYADQLDFKQTKVREALNAYPQLKGTDISPILAAEEPLGYRTSAKLAVARRNGRIV 174 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-LRHKLFQIDYL-------T 112 ++ + + + + P L+N+++ + + + L + + + L + Sbjct: 175 IGLYRRGSHEVADIGACPLHHPLVNRIVEVVREEIARQDIYLYNPVTRRGLLRYLLIKVS 234 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDER- 171 + +A+V+ + ++ A+ + + + ++V A+ + + ++ + Sbjct: 235 PATGKAMVTFVTAQREYKRITALAKWVARKIP-EVVSVQQNVNASSGNVIMGRETLRMVG 293 Query: 172 ---LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLA 227 L + R SF Q N A ++ + L+LYCG G +L Sbjct: 294 QPDLFDQVGNIRLRISPTSFFQVNHAQAARIYALVRRWAALESHEFALDLYCGIGGIALH 353 Query: 228 LARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 287 LA++ RV+ E+ + +V AQ N A N++ N + + E Q + Sbjct: 354 LAQDAGRVIGVEMVEDAVRNAQQNAAMNNLANCRFLAGDTAELLQDL------------I 401 Query: 288 LKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKVER 344 + T ++PPRSG D E + V I+Y+SCNP+TL ++L L + ++ Sbjct: 402 VDLPSLATAVLNPPRSGCDVEVLQAVTQLQPRTIIYVSCNPDTLARDLAELQKLGYRTAE 461 Query: 345 LALFDQFPYTHHMECGVLLTA 365 + D FP T H+E L Sbjct: 462 IQPVDMFPQTAHVESVARLVK 482 >UniRef50_A0RPL1 tRNA (uracil-5-)-methyltransferase n=4 Tax=Campylobacter RepID=TRMA_CAMFF Length = 367 Score = 316 bits (810), Expect = 9e-85, Method: Composition-based stats. Identities = 133/358 (37%), Positives = 206/358 (57%), Gaps = 9/358 (2%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQ 67 Y Q+ K ++ F + FRSP+S +R RAEF ++HD + L + + + Sbjct: 18 DMPYSEQIDFKKNFIKEHFKDFHNGEIIFFRSPISKFRSRAEFGLYHDDNSLSYTM-RRA 76 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK 127 +++D E I+ +M ++ ++ N L+ KLF ++++TT + ++ LLYHK Sbjct: 77 DGGYLKIDKCSIVDEKISVIMPVLLDLLKENQNLKAKLFGVEFITTRD-EILIILLYHK- 134 Query: 128 LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENS 187 QE L+ L+ V LI R+ K+ ++E+L + GK Y + + Sbjct: 135 DASTIIQELTWLQSKLK-----VGLIARSKGKKLVFGSSSLNEKLFINGKSYHYVFGDAA 189 Query: 188 FTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAA 247 F QPN +N M+ W LD T DLLELYCG+GNF++ L+ F++VLATEI+K S+ + Sbjct: 190 FIQPNRNINENMISWVLDHTT-DCKDLLELYCGHGNFTIPLSFKFNKVLATEISKASINS 248 Query: 248 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDS 307 A N N +DN++ R++AEE +A R+F RLQ IDL+SY+ I VDPPR+G D Sbjct: 249 ALKNCELNGVDNIKFTRLSAEELMEAFLFKRDFRRLQDIDLRSYEFSHILVDPPRAGCDK 308 Query: 308 ETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 ++ Y I+YISCNP TL +NL+ L +TH V++ A+FDQF +T+H+EC V+L Sbjct: 309 SVLDFIRNYENIIYISCNPLTLKENLKLLCKTHSVDKFAIFDQFVHTNHIECAVVLKK 366 >UniRef50_UPI0001C30E02 RNA methyltransferase, TrmA family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30E02 Length = 456 Score = 316 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 139/386 (36%), Gaps = 43/386 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDL-----VPEVFRSPVSHYRMRAEFRIWHDG--- 56 YE QL K ++ + L P V YR + E+ +G Sbjct: 88 PWQILPYERQLEIKSKQVDDALRRIGKLGGFELEPIVPALETWRYRNKLEYSFGTEGTAE 147 Query: 57 -DDLYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRH 103 +L + + ASE N + ++A R LR+ Sbjct: 148 RGELIFGFHAPGEWDRIVPIADCMLASERGNAVRDQVLAFCREQGLTAYDRRTRRGFLRN 207 Query: 104 KLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL 163 + + T +V++ +LD E EA L Q + T++ Sbjct: 208 CVIREGRRTGQFQVRLVTM--PGELDREAFAEAVDCDGLLWTQFDGLGETTAEGDTELIA 265 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKG-SKGDLLELYCGNG 222 DY++E L M +R N+F Q N M ++ A D L +LYCG G Sbjct: 266 GSDYLEEEL----NGMSFRVSPNAFFQVNTEMAEKLYALAGDYASLAGFERLYDLYCGIG 321 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 L +A + EI + ++ A N N IDN + + + Sbjct: 322 TVGLTMAPRAGELWGLEIIEDAIGDAIANARLNEIDNARFFAGDVRTALRLLVDTA---- 377 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-T 339 + + VDPPR+GL + + + + R++YISCNP TL N L++ Sbjct: 378 --------GSPDVVVVDPPRAGLSRKVVRRIIDASPKRLVYISCNPTTLAPNGAQLAEAG 429 Query: 340 HKVERLALFDQFPYTHHMECGVLLTA 365 + + ++ D FP T H+EC L Sbjct: 430 YVLRKVRPVDMFPQTPHIECVALFER 455 >UniRef50_Q9LU28 RNA methyltransferase-like protein n=14 Tax=Embryophyta RepID=Q9LU28_ARATH Length = 554 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 80/418 (19%), Positives = 139/418 (33%), Gaps = 76/418 (18%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSD-----------LVPEVFRSPVSHYRMRAEFRIWHD 55 YEAQL K ++ ++ L P V HYR + EF Sbjct: 151 QNLSYEAQLRAKEEQVHELIRHVGRFSDNNPGLEIVLKPIVACDIQFHYRNKMEFSFGPQ 210 Query: 56 G--------------DDLYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVR---- 96 + + + VD SE N ++ A+ R Sbjct: 211 RWLPIEMLNERQDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNLVLAAVQDCWRDPEL 270 Query: 97 ---------NNPVLRHKLFQIDY-LTTLSNQAVVSLLYHKKLDDEWRQEAEAL------R 140 + L+H + + + T S + +V+ + + + + + Sbjct: 271 SLSPYDCRSHVGFLKHLMLRTGRNVETGSLELMVNFVTSSYKPELLKPLVDRISSIPQVV 330 Query: 141 DALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQML 200 + N +V K +D I E L + + ++ NSF Q N + Sbjct: 331 SIMNNVNSSVGNTSVGEKEYTLYGKDTITEVL----RGLTFQISANSFFQTNTHQAEVLY 386 Query: 201 EWALDVTKGSKGD---LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI 257 + + +L+L+CG G L LAR V E+ ++ A N N I Sbjct: 387 KLIEESAGLKGDGSEVVLDLFCGTGTIGLTLARRAKHVYGYEVVPQAITDAHKNAQINGI 446 Query: 258 DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD--SETEKMVQA 315 +N I+ + + + + + DP R G+ + Sbjct: 447 ENATFIQGDLNKIGEDFGNNF------------PKPDIVISDPNRPGMHMKLIKFLLKLK 494 Query: 316 YPRILYISCNPETLCKNLETLSQT---------HKVERLALFDQFPYTHHMECGVLLT 364 PRI+Y+SCNP T ++L+ L +K+ + D FP+T H+EC LL Sbjct: 495 SPRIIYVSCNPATCARDLDYLCHGVEEKNLKGCYKLMSVQPVDMFPHTPHIECVCLLE 552 >UniRef50_C0EHU9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHU9_9CLOT Length = 467 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 151/386 (39%), Gaps = 45/386 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV--FRSPV--SHYRMRAEFRIWHDGDDLYH 61 L +YEA+L K ++++ + V S YR +A+F + Sbjct: 95 LRHIRYEAELDIKRRQVEACFRRIGGIDLTVERILSNPHTEGYRNKAQFPVALRDGKAVA 154 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDY 110 + +++ + S L+ ++ + + ++R+ + Sbjct: 155 GFYAKRSHRVVPCGDCRLQSPAFAPLVRVILDFIDEYHLPPYDETNHTGLIRNLYLRE-- 212 Query: 111 LTTLSNQAVVSLLYHKKLDDEWRQEAEAL-------RDALRAQNLNVHLIGRATKTKIEL 163 + + +V L+ KK + A L + L +N + + + Sbjct: 213 -APATGEIMVCLVATKKHIPSADELARRLVACNPKVKSVLVNRNSQKTNVILGDRCSVVW 271 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNG 222 + I + L + + SF Q N+ ++ + A + + + L++LYCG G Sbjct: 272 GKPVIHDVL----RGVDVELSPLSFYQVNSLQAERLYDLAEEYAHLTGEETLVDLYCGAG 327 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 L++A RV+ EI +V A+ + N + N + + A+E +++ Sbjct: 328 TIGLSMAGKAKRVIGVEIIPVAVEDARRSAQRNGVRNAEFLCADAKEAARSLAQ------ 381 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQT 339 + + + + VDPPR G D+ + + A RI+ ISCNP T ++ L Q Sbjct: 382 ------QGLRPDVVIVDPPRKGCDASVLQSICEMAPQRIVMISCNPATAARDCGLLQQQG 435 Query: 340 HKVERLALFDQFPYTHHMECGVLLTA 365 ++VE +A D F T H+EC + L Sbjct: 436 YRVEEVAAADLFSRTLHVECVISLVK 461 >UniRef50_Q2JP08 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Cyanobacteria RepID=Q2JP08_SYNJB Length = 464 Score = 314 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 78/390 (20%), Positives = 139/390 (35%), Gaps = 52/390 (13%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDL-----VPEVFRSPVSHYRMRAEFRIWH-DGDD 58 Y QLA K L+ + L VP + YR + + + +G Sbjct: 97 QWQHVSYAQQLATKQQILRDALERIGGLTLPQPVPILGSQQPLRYRNKVTYPMAKPEGQP 156 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQ 107 L + + + + ++ P E ++ + + + R+ LRH + Sbjct: 157 LRMGYYQRGSHRLVNLNQCPVQDERLDVFLREIKRDLQETGWSVYDESRHQGHLRHLGLR 216 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEA-------LRDALRAQNLNVHLIGRATKTK 160 I T + +++L+ + AE L N +T+ Sbjct: 217 IGRRTR---EVLLTLVSCSRRLPHLESWAERWMQRYPDLVGVCLNLNSARTNAIFGPETE 273 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYC 219 + + + E SF Q N W D + +L+ YC Sbjct: 274 VIAGRGSLREEFA----GFSLWIDSTSFFQVNTEQAEAFFTWIADQLNLRGEETILDAYC 329 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G +L LA+ R + E +VA A+YN N I + Q + E+ + Sbjct: 330 GIGTLTLLLAQRAKRAMGVEALPEAVAQARYNAQFNGIASAQFFQGTVEQVLPTL----- 384 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKM--VQAYPRILYISCNPETLCKNLETL- 336 + + +DPPR G D + + ++ PRI+YISC+P TL ++L+ L Sbjct: 385 -----------PPADIVVLDPPRRGCDRQVLETLKLRRPPRIVYISCHPATLARDLQILL 433 Query: 337 -SQTHKVERLALFDQFPYTHHMECGVLLTA 365 ++++ + D FP T H+E L Sbjct: 434 AEGSYRLTQWRAADFFPQTGHVEGVAFLER 463 >UniRef50_B1H0G9 Putative RNA methyltransferase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0G9_UNCTG Length = 449 Score = 314 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 79/380 (20%), Positives = 151/380 (39%), Gaps = 36/380 (9%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFS-DLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIF 64 YE+Q+ K + ++ + + + HYR + EF +++ + Sbjct: 84 FQNISYESQIKYKQEYISELLNFAGVKISKILISPQIWHYRNKMEFSFFNNKGIADLGLH 143 Query: 65 DQQT-KSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDYLT 112 + + V A + Q++ + + RH + + Sbjct: 144 CKGMFNRYVSVPPCFIADKGFLQVVETVKRFANGNNFSVYNNKTHEGFFRHLVLRKAGNN 203 Query: 113 TLSNQAVVSLLYHKK---LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYID 169 V++ + + L+ ++ +E N A + + + +I Sbjct: 204 NQFLINVITNVVDCESVFLEPLIKELSEFSCSIYWTSNGRKSDAVLADRLTLMCGKPFIT 263 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLAL 228 ERL + GK+ + SF Q N+ + L + SK +L +LYCG G +++ Sbjct: 264 ERLNIGGKDYFFDISPFSFFQTNSKATEILYTEILRLLNPSKYTVLLDLYCGTGAIGISM 323 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 A N RV+ E ++ A+ N AN++ N + AE++ + Sbjct: 324 AHNVKRVIGVECIGQAIDNAKENALANNVFNAEFYASDAEDWIK---------------E 368 Query: 289 KSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQT--HKVER 344 + + VDPPRSGL + K + RI+Y+SCNP TL ++L+ +++ K++ Sbjct: 369 NKSCFDAVVVDPPRSGLTKDIIKFLLESKAKRIIYVSCNPSTLARDLQLITENSKCKIKE 428 Query: 345 LALFDQFPYTHHMECGVLLT 364 + D FP T+H+E VLL Sbjct: 429 IIPVDMFPQTYHIETVVLLE 448 >UniRef50_C5EY89 tRNA (Uracil-5-)-methyltransferase n=3 Tax=Helicobacter RepID=C5EY89_9HELI Length = 369 Score = 313 bits (803), Expect = 5e-84, Method: Composition-based stats. Identities = 136/356 (38%), Positives = 216/356 (60%), Gaps = 7/356 (1%) Query: 12 EAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSR 71 E L K+ R +M+ EVF S +R R E I+H + + + + ++ + Sbjct: 17 EYSLESKIARASAML---GFQNFEVFGSQEVSFRARCELGIYHKENKIIYTM--RKGRQF 71 Query: 72 IRVDSFPAASELINQLMTAMIAGVRN--NPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLD 129 + + + P + + + + + + R KLF I+ L+T + +++L+YHKKL+ Sbjct: 72 VPIQNCPILVDNLQAFLQVLKEVLNDDFFGDFREKLFAIEALSTQMDTILLTLIYHKKLN 131 Query: 130 DEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFT 189 D+W + A ++ L + + + ++GR+ KI +D+D++ E L V K YR E +F+ Sbjct: 132 DKWLEIARVFKEVLEKRGIKLEVVGRSRGVKIVVDKDFVIEELKVGKKGYFYRYDEGAFS 191 Query: 190 QPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQ 249 QPN +N +ML+WA+D K S DLLE+YCG GNF++ + F +VLATEI+K S+ AA+ Sbjct: 192 QPNPKVNEKMLKWAMDSLKRSDEDLLEMYCGCGNFTIPFSEKFRKVLATEISKTSIRAAK 251 Query: 250 YNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET 309 + N +N++ +R+ A+E +A+ GVREF RL+GI L+ Y ++FVDPPR+GL E Sbjct: 252 FACEKNQRNNIKFVRLNAQECIEALEGVREFRRLEGIRLQDYCFSSVFVDPPRAGLGEEV 311 Query: 310 EKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 + +Q + ILYISCNP TL K+LE L QTHK+ ++A FDQFP+T H+E GVLL Sbjct: 312 SRFLQRFQNILYISCNPSTLAKDLEILKQTHKISKVAFFDQFPHTPHLESGVLLHK 367 >UniRef50_D1U8X8 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U8X8_9DELT Length = 465 Score = 313 bits (802), Expect = 6e-84, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 151/395 (38%), Gaps = 48/395 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDL-----VPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L Y QLA+K ++ + + + + YR + EF D L+ Sbjct: 84 LQHLAYPEQLAQKNAQVAAALTRIGGVQDLVMDAPAGSPDIWGYRNKMEFAFEQREDGLH 143 Query: 61 HIIFDQ---QTKS---RIRVDSFPAASELINQLMTAMIAG-----------VRNNPVLRH 103 + + + + +D + ++M A+ + RH Sbjct: 144 LGLREPTPEGSNRPGPVLDIDQCHLCAAWDVEIMVAVRQFCAATGVPAYNPATESGFWRH 203 Query: 104 KLFQIDYLTTLSNQAVVSLLYH---------KKLDDEWRQEAEALRDALRAQNLNVHLIG 154 + + + + +V L+ K + + + Q L + + + + Sbjct: 204 LVIRHA----AAGEVMVHLITARDERKDNLIKDMAELFLQRFPELASFVHSTRVKRTTVA 259 Query: 155 RATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL 214 K L +++ERL +E+ YR N+F Q N ++ + S + Sbjct: 260 FGEKIVYSLGNAFVEERLARGEREVRYRLSPNAFFQTNTGGASELFGTVAEFCALSDTHV 319 Query: 215 L-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 L +LYCG G + LA RV+ E ++ +V A+ + N + N + + E+ Sbjct: 320 LLDLYCGTGAIGIYLAGEAGRVIGYEQSEEAVTKARESARLNGLTNCSFVSGSLEQGIPG 379 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCK 331 G + + + RSG+ +T + + A PRI+ +SC+P TL + Sbjct: 380 FAGSGDQAVPDVVVVDPP----------RSGMHEKTAEALLALGAPRIVAVSCDPATLAR 429 Query: 332 NLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 +++ L+ + V R+ D FP+THH+E LL + Sbjct: 430 DVKRLADRYHVTRVRAVDMFPHTHHIETVALLELR 464 >UniRef50_B0TDG7 23S rRNA (Uracil-5-)-methyltransferase ruma n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TDG7_HELMI Length = 490 Score = 313 bits (802), Expect = 8e-84, Method: Composition-based stats. Identities = 80/420 (19%), Positives = 146/420 (34%), Gaps = 72/420 (17%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHD---- 55 L Y AQ K ++ + L V + YR R + + + Sbjct: 81 QLQMIDYPAQCRVKTEGVRDALRRLGRLENVPVGEIVGAANPWRYRNRVQMHLRREAGAP 140 Query: 56 GDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLS 115 G L + + + D P E ++ A+ + + L T + Sbjct: 141 GKPLQMGYYRLSSHELVENDECPLLPESFPPVLKALRRHLPEIDPAGELPIRHVVLKTTT 200 Query: 116 -----NQAVVSLLYHKKLDDEWRQEAEALRDALRAQN----------------------- 147 + ++ L++ WR+ L L + Sbjct: 201 PLERAGEMMLILVF-SAWRSAWRKAVGDLAKRLMGEGATGEGATGEGATGEGATGEGATG 259 Query: 148 ----------LNVHLIGRATKTKIELDQDY-------IDERLPVAG-KEMIYRQVENSFT 189 +++++ K L DY ERL + SFT Sbjct: 260 EGLTGERYNLVSLYVNVNEKKEGEVLGPDYPFHVSKPGKERLTDYLPGGLQIEVGPASFT 319 Query: 190 QPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAA 248 Q N + + +V + + +++ YCG G SL LAR+ RV+ E +V A Sbjct: 320 QVNPRQTEILYQLTKEVCGLTGRETIIDAYCGAGTISLFLARDCARVIGIEEVPMAVEDA 379 Query: 249 QYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSE 308 Q N N I NV+ + E+ ++ ++ + I +DPPR G + Sbjct: 380 QKNAEQNGITNVEFLTGKVEDLLPSLLE------------RACVPDVIVLDPPRRGCHAR 427 Query: 309 TEKMVQ--AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTA 365 + + RI+Y+SC+P +L ++ L + +V+++ D FP T H+E VL++ Sbjct: 428 VIEAIAQTGPDRIVYVSCDPASLARDAARLTAHGWQVKQVTPVDMFPQTGHVETVVLMSR 487 >UniRef50_A0LEY8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LEY8_SYNFM Length = 488 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 75/406 (18%), Positives = 144/406 (35%), Gaps = 60/406 (14%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 YE QL K V++ + + + V + HYR + EF Sbjct: 98 QWQDIAYEEQLKWKRVQVADSLEHLAGAQGVKIEAAVPSDRLIHYRNKMEFTFSDRRWLT 157 Query: 60 Y-----HIIFDQQT-----------KSRIRVDSFPAASELINQLMTAMIAGVR------- 96 + D T V+ S +++ R Sbjct: 158 PEEIDAAGMRDAYTFTLGLHVRSWFDKVFNVEDCLLESAEAVEIVKETRDWCRGSGVPAY 217 Query: 97 ----NNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK---------LDDEWRQEAEALRDAL 143 R + + T Q ++ L+ + L + + Sbjct: 218 GIKSQRGFWRFLVIREGKRT---GQTLLHLVTSDQPEHEAAVNTLTRHLVSRFPHITTVV 274 Query: 144 RAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWA 203 + + + ++++ I+ERL + +R SF Q N ++ + Sbjct: 275 HSVSRKKAQVAFGDQSRVVAGPGVIEERL----GGLRFRISAESFFQTNPFSAEKLYDEV 330 Query: 204 LDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQI 262 + + + +LYCG G+ +L++A RV+ E+ ++ A N N I+N + Sbjct: 331 SRLAAFQGTETVWDLYCGTGSIALSVAPRVARVVGFEVVDQAIEDACVNARLNGIENARF 390 Query: 263 IRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRIL 320 I +E N +G + + + DPPR+G+ + + RI+ Sbjct: 391 ISGDLKE---------RINHARGPGSGEHHPDIVITDPPRAGMHPQVVGALLEMGPGRII 441 Query: 321 YISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 Y+SCNP TL ++L ++ +++ + FD FP+T H+EC V + K Sbjct: 442 YVSCNPATLARDLAFFTERYEIGTVRPFDLFPHTPHIECVVRMDRK 487 >UniRef50_UPI0001C37219 RNA methyltransferase n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37219 Length = 416 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 79/398 (19%), Positives = 138/398 (34%), Gaps = 57/398 (14%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP-----VSHYRMRAEFR-IWHDGDDL 59 YEA+ K + A LVP+ + YR +A++ + D Sbjct: 35 FMHMSYEAECRIKSNIVTEAFARIGHLVPKEILPIFSSDSIEGYRNKAQYPYADYKYTDN 94 Query: 60 YH----IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV--------------RNNPVL 101 + ++ + V ++ + N VL Sbjct: 95 TVFPKFGFYAPRSHRLVPVTYCVLQPAAFGDILRHCEEELGTADFNAITPYNEESGNGVL 154 Query: 102 RHKLFQIDYLTTLSNQAVVSLLYHKK----------LDDEWRQEAEALRDALRAQNLNVH 151 RH + + + + +V + K L + + ++ + N Sbjct: 155 RHLYIRQGFHSK---EIMVCFVTAKDNNHIRKQLTDLGNTLIADTHEIKSVMLNVNPQKT 211 Query: 152 LIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK 211 + KT + +D I + L + SF Q N A ++ A + K Sbjct: 212 NVILGKKTVCLIGKDTIADTL----CGVPVSLSPQSFYQVNTAQAEKLFAEAKRLAAPKK 267 Query: 212 GDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF 270 +LL +LYCG G L++A +V+ E+ ++ A+ N I N + A E Sbjct: 268 DELLLDLYCGAGAIGLSMADTVGKVIGVEVVPQAIEDAKANAKRAGISNAEFFAGDAGEI 327 Query: 271 TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPET 328 + + + I +DPPR G D+ T A RI+ ISCNP T Sbjct: 328 AAKFAA------------EGRKPDIIVLDPPRKGCDTLTLDACLEMAPSRIVMISCNPST 375 Query: 329 LCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 ++ L + ++ L D FP T H+EC VL++ Sbjct: 376 AARDAAYLCENGFTLDVLRPADFFPRTKHVECVVLMSR 413 >UniRef50_D2QQ01 RNA methyltransferase, TrmA family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QQ01_9SPHI Length = 476 Score = 312 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 75/401 (18%), Positives = 138/401 (34%), Gaps = 58/401 (14%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDG---- 56 QY QL K ++ + + P + P +YR + EF Sbjct: 94 WQHIQYSEQLGFKHQQVVDHLTRIGKVELPEFRPIMPAHPTQYYRNKLEFTCAEGRWLTS 153 Query: 57 ---------DDLYHIIFDQQT-KSRIRVDSFPAASELINQLMTA-----------MIAGV 95 D + + + N + A + Sbjct: 154 AEVGTNQPMDQRAVGFHVPGRFDKVLPIRHCYLQPDPSNAIREAIDAYVLQHDMTLYNLK 213 Query: 96 RNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQ-------NL 148 + LR + + + Q +V+L + + L+ N Sbjct: 214 MHTGFLRTLIIRT---ADTTQQVMVTLQVAQDNPELLNGLMTYLQTLFPQITSLNYILNT 270 Query: 149 NVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK 208 + + + + YI+E++ + +R SF Q NA + + A + Sbjct: 271 KKNDSYQDQEVVNWAGKPYIEEQMEA----LTFRIGPKSFYQTNAQQAYNLYKVAREFAG 326 Query: 209 GS-KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAA 267 + + + +LY G G +L +AR V+ E + SVA A+ N N I N + Sbjct: 327 LTGQERVYDLYTGTGTIALFVARLAKHVVGVEYVEASVADARVNAQVNGIANTTFVAGDM 386 Query: 268 EEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCN 325 + + + + + DPPR+G+D + + A RI+Y+SCN Sbjct: 387 KAIL-----------TDEFFAEHGRPDVVITDPPRAGMDEAVTRQLLKAAPERIVYVSCN 435 Query: 326 PETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 T ++L L + + V + D FP+THH+E V+LT + Sbjct: 436 TATQARDLAILDEGYTVTGVQPVDMFPHTHHVENVVVLTKR 476 >UniRef50_B7CDB5 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDB5_9FIRM Length = 431 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 70/370 (18%), Positives = 142/370 (38%), Gaps = 30/370 (8%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIF 64 L Y QL K ++ + ++ P + +YR +A+F + + + Sbjct: 81 QLQHMSYAYQLDYKYKHVKKLFEGI-EVKPILGMDNPWYYRNKAQFPVKIKDGKVQMGFY 139 Query: 65 DQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLY 124 Q + + +IN++ + + + L + + +++ V + Sbjct: 140 RQHSNDVVTCKECKIQDHVINEVFSFIQKKITLKMA--QDLRHVFIRHSSTDEIQVVFIG 197 Query: 125 HKK-----LDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 + L D+ + + + N + K+ DYI E ++ Sbjct: 198 KNEKNIISLSDQLKNTFANITSIVFNYNTRNDNVILGDTYKVLYGNDYIIEECLGNKVKL 257 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDRVLAT 238 ++ +F Q N + A+ + +++Y G G +A++++ V+ Sbjct: 258 HFK----AFFQVNPKQMEVLYSQAIKAANLTGNETCIDMYAGTGTIGMAVSQHAKSVIGV 313 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 EI K +V A N NH+D+ + A +F D K + + IF+ Sbjct: 314 EIVKEAVDNANDNTKMNHLDHCHYVCQDATDF--------------AHDHKEDKIDVIFI 359 Query: 299 DPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTH 355 DPPR G+ K + +I+Y+SCNP+TL ++L+ + ++ E + D F T Sbjct: 360 DPPRKGMTENGIKDTITMQPDKIVYVSCNPKTLSRDLKIFKEYGYQCEYVQPVDMFCQTI 419 Query: 356 HMECGVLLTA 365 +EC LT Sbjct: 420 GLECVAKLTK 429 >UniRef50_B8DRP4 RNA methyltransferase, TrmA family n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DRP4_DESVM Length = 479 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 76/405 (18%), Positives = 141/405 (34%), Gaps = 60/405 (14%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDD-L 59 Y QL K + + L P + +R + EF D D L Sbjct: 87 WQDLPYAEQLRWKERFVVDALGRIGGLRDANVLPILASPAERGFRNKMEFAFSQDRDGQL 146 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQI 108 + + + +++ + + + L +++ A+ R + R + + Sbjct: 147 HLGLRRRASRAVVDITECHLQTPLTVRIVEAVRELARESGLPGWDDSRQDGFWRFLVVRE 206 Query: 109 DYLTTLSN---------------QAVVSLLYHKK---------LDDEWRQEAEALRDALR 144 L + Q ++ + + L + R + + Sbjct: 207 PELGRDAGADTPAEGEGQDTPGRQCLIQCITGRHPGAAQAVSRLAEALRARFPEVTGVVH 266 Query: 145 AQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWAL 204 + L+ I + + + ERL +SF Q N A + + A Sbjct: 267 SLRLDPEQIAYGERVLAVDGEAVLTERL----GGNDLLLGPDSFFQTNTAAAGLLYDEAR 322 Query: 205 DVTK-GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQII 263 + G + +LY G G +L LAR V EI +V A+ N A N+I N + Sbjct: 323 RMAAAGPDDTVWDLYSGVGAIALHLARAAGAVRGFEITPEAVNDARANAARNNILNCSFV 382 Query: 264 RMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILY 321 + + + + VDPPR+GL + + V A RI+Y Sbjct: 383 SGDV-----------RASLRRERPGEGVSPRIVVVDPPRAGLHEDVVEAVSAHQPERIVY 431 Query: 322 ISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTA 365 +SCNP T+ ++ ++ + ++ D FP++ H+EC LLT Sbjct: 432 VSCNPATMARDAALFTARGYALQEARPVDLFPHSPHVECVALLTR 476 >UniRef50_B9DV28 Putative RNA methyltransferase n=1 Tax=Streptococcus uberis 0140J RepID=B9DV28_STRU0 Length = 451 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 66/384 (17%), Positives = 141/384 (36%), Gaps = 38/384 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPF-------SDLVPEVFRSPVSHYRMRAEFRIWHDGD 57 + Y QL K ++ + F + + HYR + +F+ Sbjct: 84 QIMHLAYPQQLVFKEDVIRQALKKFKPKGYEQYQIRNTIGMDNPWHYRAKLQFQTRSFSG 143 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV----------LRHKLFQ 107 + ++ + + I +D+ + +++ + + + LR + + Sbjct: 144 KVVAGLYAEGSHRLIPIDNCLVQDQSTQEIVNHITQLLDQYKIPIYNERKIEGLRTIMIR 203 Query: 108 IDYLTTLSNQAVVS--LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ 165 + ++ ++ + + + ++ N + KT+I Q Sbjct: 204 KAIASQTLQIIFITSKEVHLAPIILDMTKTYPEIKTVALNINRSKSSELYGDKTEIIWGQ 263 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNF 224 D I+E + + + +F Q N + ++ + S+ D +++ YCG G Sbjct: 264 DTIEEEV----LDYHFALSPRAFYQLNPKQTSVLYAQVVEALEVSESDHIIDAYCGVGTI 319 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 A A+ + +I ++ A+ N +N AE+ Sbjct: 320 GFAFAKKVKSIRGMDIIPEAIEDAKKNAQDMGFENTYYECGKAEDIIPKWYQ-------- 371 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQTHKV 342 Y+ + I VDPPR+GLD + + + +++Y+SCN TL ++L LS+ + V Sbjct: 372 ----DGYRADAIIVDPPRTGLDKKLIETIMTYQPEKMVYVSCNTSTLARDLVELSKVYTV 427 Query: 343 ERLALFDQFPYTHHMECGVLLTAK 366 + + D FP+T E V L K Sbjct: 428 DYIQSVDMFPHTARTEAVVKLRRK 451 >UniRef50_B2A5X0 RNA methyltransferase, TrmA family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A5X0_NATTJ Length = 454 Score = 311 bits (796), Expect = 4e-83, Method: Composition-based stats. Identities = 76/380 (20%), Positives = 148/380 (38%), Gaps = 35/380 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y+ QL K + + M + L P + +YR + + + G Sbjct: 87 QLQHLSYKGQLQYKENLVANQMKKVAGLKNPRVLPAIGMESPWYYRNKFQIPVKPIGGKP 146 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN------NPVLRHKLFQIDYLTT 113 +F +++++ + +D N+++ M V + N L+H + ++ T Sbjct: 147 RLGLFQKRSQNLVEIDHCMIQKHGNNEVLEKMRNLVDSYEKEFYNCELKHIISRVGDKTD 206 Query: 114 LSNQAVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYID 169 V+ + + + + + L ++ N + K ++Y+ Sbjct: 207 QVQLTFVTGSEKIDNKQMILEPLKNGMANLVGIVQNINKKPRGNVLGDRFKTLWGREYLM 266 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLAL 228 + L + +R +F Q N + + + ++ K +++++YCG G SL Sbjct: 267 DNL----LDKKFRVSAGAFYQVNPSQTEVLYQKVFELCKLKGVENVMDIYCGIGTISLLA 322 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 A N +V+ EIA+ +V A N N +N + AE+ + Sbjct: 323 AENASKVVGIEIAEEAVKDANINKNINGQENAWFYQARAED------------EKTESII 370 Query: 289 KSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ-THKVERL 345 + Y E + +DPPR G D + +I Y+SCNP TL +++ L + + E Sbjct: 371 QDYSPEIVIMDPPRKGCDENLLTSLDWIRPEKIAYVSCNPATLARDVGKLIEFGYYPELF 430 Query: 346 ALFDQFPYTHHMECGVLLTA 365 D FP T H+E +LT Sbjct: 431 QPVDMFPQTTHIEVICILTK 450 >UniRef50_C4GDX8 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GDX8_9FIRM Length = 394 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 76/389 (19%), Positives = 149/389 (38%), Gaps = 48/389 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHD-GDDLYHIIF 64 + Y+ QL K + ++ + P + + +YR +A + + + Sbjct: 22 MQGLPYKEQLKRKEKEVADLLKAYGRPEPILGMNFPYYYRNKAHAVLGGSLKGKIVCGTY 81 Query: 65 DQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDYLTT 113 ++ + + +D +QL+ ++ + LRH + + T Sbjct: 82 ERGSHRIVNIDRCQIEDRECDQLIASVRELLPSFKVEPYNEDTGRGCLRHIIAR---RTA 138 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALR-------DALRAQNLNVHLIGRATKTKIELDQD 166 Q ++ L+ + ++ ALR L+ N + + ++ Sbjct: 139 DGGQIMLILVTAQAAFPSRKKFVSALRKAHPNITTILQNINGQSTSVVLGDRYEVLYGPG 198 Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFS 225 YI++RL +R +F Q N+ ++ A+D+ +L+ YCG G Sbjct: 199 YIEDRLM----GARFRISPGAFYQVNSQQTKKLYRLAVDMADLKGKERVLDTYCGTGTIG 254 Query: 226 LA----LARNFDR---VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 +A LAR ++ E +V A+ N N + + + A F A Sbjct: 255 IAAAVDLARRTKEPMELIGVECNPAAVRDARINARVNGLRQARFVVADAGAFMLAEAEA- 313 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETL 336 C+ +F+DPPR+G E ++ +I+YISC+P+T ++L+ L Sbjct: 314 -----------GRSCDLVFMDPPRAGSTEEFLLALRRLVPEKIVYISCDPKTQARDLKYL 362 Query: 337 SQTHKVERLALFDQFPYTHHMECGVLLTA 365 + + R+A D FP+T +E VLL Sbjct: 363 DSAYAIRRIAPVDMFPFTDGIENVVLLEK 391 >UniRef50_Q8KGF9 Uncharacterized RNA methyltransferase CT0009 n=12 Tax=Chlorobiaceae RepID=Y009_CHLTE Length = 483 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 74/401 (18%), Positives = 144/401 (35%), Gaps = 55/401 (13%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWH------ 54 YEAQL K ++ + + P + HYR + EF + Sbjct: 95 WMHVSYEAQLRYKHKKVTDSLEHIGGFESPDVRPVLAAPDALHYRNKVEFSCSNMRYLLQ 154 Query: 55 ---------DGDDLYHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGV--------- 95 ++ +D+ A E +N+++ + Sbjct: 155 SEIDSDQLAKPKTFALGFHAPGNFEKVLDLDTCYLAKECMNRVLNVLRDFAIERGLEPYA 214 Query: 96 --RNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDA-----LRAQNL 148 + LR+ + + +V+ Y K L ++ EA L Sbjct: 215 AKAHEGYLRNLMLRYSERHEQLMVNIVTSWYDKALMQALKERLEAAMPEQQMTLLNNVTT 274 Query: 149 NVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK 208 + + + + Y+ ERL ++ +R NSF Q N + + + V Sbjct: 275 RKNTVATGEQEYVISGDGYVTERL----GDLDFRISANSFFQTNTRQAETLYDQIIAVGG 330 Query: 209 GSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAA 267 + D + +LYCG G +L LAR+ + + E+ + +V A+ N N + N + Sbjct: 331 ITPEDTVYDLYCGTGTITLYLARHCKQAIGIEVVESAVKDAEMNAELNGLSNTVFFQADL 390 Query: 268 EEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCN 325 + F+ +Q + I DPPR+G+ + + RI+Y+SCN Sbjct: 391 ----------KNFHAMQEALEPYAKPRIIVTDPPRAGMHPKALDTMLKLQPERIVYVSCN 440 Query: 326 PETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTA 365 P+ L ++ + + ++ +++ D FP T+H+E Sbjct: 441 PDNLARDGKEIAARGYRMTSAQPVDMFPQTNHIETVACFER 481 >UniRef50_B1YK40 RNA methyltransferase, TrmA family n=4 Tax=Bacillales RepID=B1YK40_EXIS2 Length = 461 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 72/385 (18%), Positives = 145/385 (37%), Gaps = 42/385 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE------VFRSPVSHYRMRAEFRIWHDGDD 58 L YE QL K +++ + L E + YR +++F + +G Sbjct: 87 QLQHMSYEGQLRYKEDMVRNAFTKSTKLNVEKSDIRPTIGTTEWEYRNKSQFAVGKEGTQ 146 Query: 59 LYHIIFDQQTKSRIRVDSFPAA-----------SELINQLMTAMIAGVRNNPVLRHKLFQ 107 + ++ + + +D ++++N + + + V+R+ + + Sbjct: 147 IVSGLYSANSNRLVAIDECIVQNKETLRVNKAVTKILNDYNVPVYNSAKQDGVIRNIVVR 206 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDY 167 T + V L+ K + + + D ++V L T + Sbjct: 207 TGIKT---GEIQVVLVAFKDGFKDLEGLSRDIYDI--PGVISVALNINDKMTSRVFGEQT 261 Query: 168 ----IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNG 222 ER+ E Y+ +F Q N +M + + + +++ Y G G Sbjct: 262 EILRGVERIEEKMGEFTYQLSPRAFFQLNPEQAERMYGEIVKAAALTGEERVVDAYAGVG 321 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 + L +A V EI + +V A ++ ++ Q + AE + Sbjct: 322 SIGLWIANGAKEVRGMEIVEEAVEDATAHMKQYGFNHAQYVVGKAETWIPRW-------- 373 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQT 339 + + + VDPPRSG D++ + +I+Y+SCNP+TL ++ + L Sbjct: 374 ----VKEGWIPDVFIVDPPRSGCDTQLLNAMISSKAKKIIYVSCNPQTLARDCDHLMKAG 429 Query: 340 HKVERLALFDQFPYTHHMECGVLLT 364 +KV + +D FP T H+E V+L Sbjct: 430 YKVSYIQPYDMFPQTAHVEAIVVLE 454 >UniRef50_D2MPE3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MPE3_9FIRM Length = 442 Score = 309 bits (793), Expect = 7e-83, Method: Composition-based stats. Identities = 78/375 (20%), Positives = 145/375 (38%), Gaps = 29/375 (7%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAP----FSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 L Y+ QL+ K +Q + + P + YR + + I Sbjct: 81 QLQHMAYQEQLSLKQEIVQIHFLRHQLDLNRIHPILPSPKQERYRNKVQVPIQEKDGLAQ 140 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV---LRHKLFQIDYLTTLSNQ 117 + + + + +E NQ+ + + + + R+ + + N+ Sbjct: 141 LGFYRNHSHDVVVYEDCMVETEESNQITHFVKRFLNQHHLTSNFRYLFIRHIH---QRNE 197 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDY---IDERLPV 174 +V + + ++ ++ A L +L I + L Sbjct: 198 VMVMPIVREYPFEKSKKLALELVKEFPNITSFSYLKNPKETNVILDGPIFEVIGPLFLEE 257 Query: 175 AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFD 233 + M ++ SF Q N + AL++ SK D +++LYCG G + A+ Sbjct: 258 SLLGMNFQLSAKSFFQVNPYATEVLYVKALELADISKEDTVVDLYCGTGTIGILAAKIAK 317 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 +V+ EI ++ A+ N N DN++ M A++ + + +E Sbjct: 318 KVIGIEIVPEAIDNAKANAQLNCQDNLEFWCMDAQDGAKKIVETKE------------SI 365 Query: 294 ETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQ-THKVERLALFDQ 350 + + VDPPR G ET + +Q +++YISC+P TL ++LE L KVE + D Sbjct: 366 DVVIVDPPRKGCSLETLQAIQKMEPKKMVYISCDPSTLARDLEFLQSMGFKVETVQPVDL 425 Query: 351 FPYTHHMECGVLLTA 365 FP T H+EC L+ Sbjct: 426 FPQTVHVECIALIQR 440 >UniRef50_D1W5A4 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W5A4_9BACT Length = 508 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 78/402 (19%), Positives = 148/402 (36%), Gaps = 57/402 (14%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDG---- 56 YE QL K ++ + + P + YR + EF + Sbjct: 123 WQMLPYEEQLKAKQKQVHDQLERIGKIELPEFRPIMGSEKTYEYRNKLEFGCSNKRWLTW 182 Query: 57 ---------DDLYHIIFD--QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVL---- 101 D + I F ++ +L NQ+ + ++ + Sbjct: 183 EEVTSGVKYDHMNAIGFHITGAFDKIYPIEKCWLMDDLCNQIRNCIRDYAIDHDISFFDL 242 Query: 102 ---RHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATK 158 L I + + + +V L+ K ++ Q A L + + + Sbjct: 243 RAQTGLLRDIMIRSANTGEWMV-LVQFKFQEEGDEQRAHGLLQHVADSFPQITSLLYVDN 301 Query: 159 TK-----------IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT 207 K + +D+I E + ++ ++ SF Q N + A + Sbjct: 302 QKCNDTFGDQTVVVFKGKDHITETM----GDLKFKVAAKSFYQTNTNQAYHLYSVAREFA 357 Query: 208 KGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMA 266 + + +L+ +LY G G + +AR V+ E + ++ A+ N AAN I N Q Sbjct: 358 QLTGKELVYDLYTGTGTIANFVAREAREVIGIEYVEDAIKDAKVNSAANDIHNTQFYAGD 417 Query: 267 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISC 324 ++ + + + + I DPPR+G+ + + + A RI+Y+SC Sbjct: 418 MKDIL-----------TEEFIAEHGRPDVIITDPPRAGMHPDVVRTILGAAPQRIVYVSC 466 Query: 325 NPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 NP T ++L+ L + +KV + D FP+T H+E VLL + Sbjct: 467 NPATQARDLQMLDEQYKVMAVQPVDMFPHTPHVENVVLLEQR 508 >UniRef50_C1DTC8 23S rRNA (Uracil-5-)-methyltransferase n=3 Tax=Sulfurihydrogenibium RepID=C1DTC8_SULAA Length = 420 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 78/370 (21%), Positives = 150/370 (40%), Gaps = 37/370 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVP---EVFRSPVSHYRMRAEFRIWHDGDDLYHI 62 YE Q+ K L+ + + +V+ S +YR++ +F+ D Sbjct: 77 FQHIPYEKQIEIKKEILKDQLLRIGKVDLPIEKVYPSQPFNYRIKVQFKF----DGKNFG 132 Query: 63 IFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSL 122 + Q + I +D E NQ++ + + + Q+ + NQ ++ Sbjct: 133 FYRQNSNQVIDIDYCYLLKEDFNQIIHPLKKFLFKYALSP---SQVIVFSNSKNQKLIKF 189 Query: 123 LYHKKLDDEWRQEAEALRDALRAQNLNVHLIG--RATKTKIELDQDYIDERLPVAGKEMI 180 ++ + + + + N+ IG K ++ L + I E + Sbjct: 190 VF--PDNSQIANIIPKIEIYKDEIDENIKGIGFYDKKKRQLLLGEYVIFETV----DNYK 243 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVT-KGSKGDLLELYCGNGNFSLALARNFDRVLATE 239 YR +SF Q N +++ + ++ YCG G FS+ LA VL E Sbjct: 244 YRVSMDSFFQVNIYQIKNLIDLVVQEVKDKGYKRAVDFYCGVGTFSVPLANYVREVLGIE 303 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 299 + +V A+ N+ N++ N++ ++ E+ + K ++ E + D Sbjct: 304 SNEEAVKDAKTNVRHNNLKNLKFLKAKTEKGLKY--------------AKDFKPEVVVFD 349 Query: 300 PPRSGLDSETEKMVQAYP---RILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTH 355 PPRSGL+ + + +I+YISCNP TL ++L+ + ++++ D FP TH Sbjct: 350 PPRSGLNKTIIREISKIESIQKIIYISCNPSTLARDLKDFKEYGFNPLKVSMVDMFPQTH 409 Query: 356 HMECGVLLTA 365 H+E V+L Sbjct: 410 HIESVVVLEK 419 >UniRef50_C5ZX30 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Helicobacter canadensis MIT 98-5491 RepID=C5ZX30_9HELI Length = 370 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 129/353 (36%), Positives = 214/353 (60%), Gaps = 9/353 (2%) Query: 15 LAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRV 74 L KV + ++ ++ +R R E I+ D + + + ++ K + + Sbjct: 20 LESKVDYAKQLL---GINQCDIVSLRQDSFRARCELGIFFKDDKINYAM--RKGKQFVCI 74 Query: 75 DSFPAASELINQLMTAMIAGVRNNPV--LRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEW 132 ++ E + + + + + R KLF I+ L+T +++ +++L+YHKKL++ W Sbjct: 75 ENCCNLLESLQKFLPVLKKKLNQEFFKDFRQKLFAIEVLSTQNDEILLTLIYHKKLNETW 134 Query: 133 RQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPN 192 + A+ L+ AL+ V +IGR+ K+ +++DY+ E+L + GK+ YR E +FTQPN Sbjct: 135 LENAKELKKALQE--FRVEIIGRSKGVKLIVEKDYVVEKLEIDGKKYYYRYDEGAFTQPN 192 Query: 193 AAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNI 252 +N +M+EW L SKGDLLE+YCG GNF++ L++ F +VLATEI+K S+ AA++ Sbjct: 193 PKINEKMIEWVLQNISQSKGDLLEMYCGCGNFTIPLSQKFRKVLATEISKVSIRAAKFAC 252 Query: 253 AANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKM 312 N +N+ +R++ +E +A+ G+R+FNRL+ I+L+ Y I VDPPR GL E + Sbjct: 253 QRNGCNNITFVRLSGQECIEAIEGIRKFNRLEQINLEEYDFSMILVDPPRGGLGEEVCRF 312 Query: 313 VQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 +Q + ILYISCNP +L K+L+ LSQTH++ + A FDQFP+T H+E G+LL Sbjct: 313 LQNFSSILYISCNPLSLAKDLKILSQTHRIVKAAFFDQFPHTSHLETGILLQK 365 >UniRef50_Q8R5Z8 Uncharacterized RNA methyltransferase FN1713 n=16 Tax=Fusobacterium RepID=Y1713_FUSNN Length = 464 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 151/385 (39%), Gaps = 40/385 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFR-----SPVSHYRMRAEFRIWHDGDDLY 60 +YE+QL K ++ ++ + L + +YR + + + Sbjct: 95 FAMLKYESQLKYKRFMVEEVIRKIAGLSDIEISDVLASEDIYNYRNKIIEPFSVYANKII 154 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-------LRHKLFQIDYLTT 113 F +++ VD S+L N+++ + + N + + L I T Sbjct: 155 TGFFKRKSHEVFEVDENILNSKLGNKIIKELKEILNKNKISVYDENTHKGILRNIMIRTN 214 Query: 114 LSNQAVVSLLYH--------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ 165 +N+A+V L+ + KKL + R+ E ++ + N K + + Sbjct: 215 SNNEAMVVLIINSNKITENIKKLLFKLRENIEEIKSIYISLNSKKTNTVIGEKNILIYGE 274 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNF 224 I E + + + SF Q N ++ + A+ +++ Y G G Sbjct: 275 KSIKENI----NRIEFHISPTSFFQINVKQAKRLYDIAISFFDNIDNKYIVDAYSGTGTI 330 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 + +A+ +V A EI K + + N I+N++ I A E+ + Sbjct: 331 GMIIAKKAKKVYAIEIVKSASEDGEKTAKENGIENIEFINGAVEKELVKLVNNN------ 384 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ-THK 341 + +TI DPPR GL++ V ++YISCNP T ++++ S+ + Sbjct: 385 ------QKIDTIIFDPPRKGLETSIIDKVAELNLKEVVYISCNPSTFARDVKLFSEKGYV 438 Query: 342 VERLALFDQFPYTHHMECGVLLTAK 366 +++L D FP T H+EC L+ K Sbjct: 439 LKKLQAVDMFPQTSHIECVGLIERK 463 >UniRef50_C9Q1J0 TrmA family RNA methyltransferase n=2 Tax=Prevotella RepID=C9Q1J0_9BACT Length = 502 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 73/401 (18%), Positives = 139/401 (34%), Gaps = 55/401 (13%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDG---- 56 YE QL K ++ ++ S + P + HYR + EF + Sbjct: 116 WQNLPYEEQLRAKQQQVYDQLSRISHVQLPTFYPIMGSQLTLHYRNKLEFGCSNKRWLTR 175 Query: 57 ---------DDLYHIIFD--QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKL 105 D + I F + ++ +L NQ+ + + L Sbjct: 176 EEVASGATFDTMNAIGFHITGAFDKILPIEKCWLMDDLQNQIRNEIRDYALTKGISFFDL 235 Query: 106 FQ-------IDYLTTLSNQAVVSLLYH----------KKLDDEWRQEAEALRDALRAQNL 148 Q + + + + +V + +H + L + + L N Sbjct: 236 RQQTGLLRDVMIRNSDTGEWMVLVQFHFETATDQQTAEALLAHVGEHFPQITSLLWVDNQ 295 Query: 149 NVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK 208 + + +I E + ++ ++ SF Q N + + A Sbjct: 296 KCNDTFGDLPVHVFKGNGHIFEVME----DLRFKVGPKSFYQTNTQQAYHLYDVARRFAS 351 Query: 209 GSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAA 267 S + + +LY G G + +AR +V+ E ++ A+ N N I N Sbjct: 352 LSGTETVYDLYTGTGTIANFVARQAKKVVGVEYVPEAIEDAKVNSELNGISNTTFYAGDM 411 Query: 268 EEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCN 325 ++ + Q + I DPPR+G+ ++ + + RI+Y+SCN Sbjct: 412 KDILN-----------DEFIANNGQPDVIITDPPRAGMHADVIETIIRANPQRIVYVSCN 460 Query: 326 PETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 P T ++L L + + V + D FP+T H+E VLL + Sbjct: 461 PATQARDLIALDERYAVTAVQPVDMFPHTPHVENVVLLERR 501 >UniRef50_Q3AD26 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AD26_CARHZ Length = 441 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 89/384 (23%), Positives = 147/384 (38%), Gaps = 44/384 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGDDLYH 61 L YE QL K ++ ++M + + YR + F + L Sbjct: 79 LQNLDYEQQLVLKKTKVYNIMKKIGRIDAPINSVLPNFAFYRYRQKVHFTFGSSQNKLAI 138 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMT---------AMIAGVRNNPVLRHKLFQIDYLT 112 FD++ V A + + ++ + A + VLRH + + + Sbjct: 139 GYFDRKNNWF-PVTDCLIADKSLVEVAHYVTEILDAFKLKAYFNDAGVLRHLVVR---KS 194 Query: 113 TLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR------ATKTKIELDQD 166 + + + V + KL+ ++ A + Q+L H + T + Sbjct: 195 STTGEIQVVI-TAVKLNFNVKEIAAKILLNPEIQSLTFHENPKKTREVFGKGTAVTFGTR 253 Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFS 225 YI E L + YR SF Q N ++ ALD K D + + Y G G+ + Sbjct: 254 YITEEL----LGISYRLTPLSFFQINPVQAEKIYRIALDYLDLGKTDMVFDGYSGVGSLT 309 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 L AR V+ E + +V A+ N N I NV EE +L Sbjct: 310 LPAARIAASVVGVEEIRDAVEVAKTNAKLNGIANVNFFAGKVEE------------KLPW 357 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQ-THKV 342 + K Y+ I +DPPR G+ E + + RI+Y+SCNP T ++L+ L++ + Sbjct: 358 LLKKGYRFNKIILDPPREGVKKEVLEEIIKLNPERIVYVSCNPATQARDLKILAETGYYP 417 Query: 343 ERLALFDQFPYTHHMECGVLLTAK 366 + D F T H+E VLL K Sbjct: 418 VEITPVDMFSQTMHVENVVLLKKK 441 >UniRef50_C7N354 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Bacteria RepID=C7N354_SLAHD Length = 401 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 73/395 (18%), Positives = 146/395 (36%), Gaps = 57/395 (14%) Query: 9 EQYEAQLAEKVVRLQSMMAPFSDL----VPEVFRSPVSHYRMRAEFRI------WHDGDD 58 Y QLA K + + A D +P + HYR + Sbjct: 23 VPYGQQLARKQQHVDELFADLIDDGTQCLPILGMKVPLHYRNKVVSPFVGIYDKRTRRRR 82 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQ 107 + ++++ T I + ++ + + R+ LRH + Sbjct: 83 ILCGMYERGTHWVIDSSECLIENAQAKAIILTIRDLMPKFRIEPYDEDRDEGFLRHAQVR 142 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRD-------ALRAQNLNVHLIGRATKTK 160 + + + + +V+L+ + ++ AL ++ N + K + Sbjct: 143 VGHNS---GEVMVTLVTRTEQFPTAKKFVRALVSRHPEITTVVQNVNSRKTNVIMGDKER 199 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYC 219 +I + L + +R SF Q N+ + A+ + K + + +++ YC Sbjct: 200 KLYGPGFILDTL----CGLSFRISSTSFYQVNSTQTEVLYSTAIRMAKLTGTETVMDAYC 255 Query: 220 GNGNFSLALARN------FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 G G L R +++ E +VA A+ N N IDN + + A + + Sbjct: 256 GTGTIGLVAVRGINGEPGAAKLIGVEERADAVADARNNARHNGIDNAEFVAADAGAYMR- 314 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCK 331 + + +F+DPPR+G + K + RI+YISCNP T + Sbjct: 315 -----------EQAEQGRSVDVLFMDPPRAGSTPDFLKAACSISPKRIVYISCNPTTQAR 363 Query: 332 NLETL-SQTHKVERLALFDQFPYTHHMECGVLLTA 365 + + L ++++ L D FP+T H+EC + ++ Sbjct: 364 DAKYLIEHGYRIDVLQPVDMFPHTDHVECVISMSR 398 >UniRef50_C5NWS7 23S rRNA-methyltransferase RumA n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWS7_9BACL Length = 451 Score = 307 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 147/383 (38%), Gaps = 38/383 (9%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFS------DLVPEVFRSPVS-HYRMRAEFRIWHDGDD 58 L YE QL K L + LV + SPV+ YR + +F + Sbjct: 85 LAHVSYEKQLEYKRTILLDAFDKYYRLPKPDKLVLKTLASPVTEGYRNKNQFPLAVRNGR 144 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVL------RHKLFQIDYLT 112 + ++ + + + ++ A E N++ + V + + I T Sbjct: 145 VIAGLYKEGSNDLVEINEDLALHENGNKITNLAKKLLGKYKVEISTNKKNYGVKYIATRT 204 Query: 113 T-LSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR------ATKTKIELDQ 165 + + V+ + + + L+ +++ +++ T++ Sbjct: 205 SFYNGDVQVTFVANTDKIKNMDKVVNELKRERIVKSIILNITNDKDHLVMGTESVTLYGS 264 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNF 224 DYI E++ + Y SF Q N ++ + ++ + D+ L+ YCG G Sbjct: 265 DYIVEKI----GDTKYELSAKSFFQLNPPATKKLYDKVVEFAALKETDVVLDAYCGVGTI 320 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 ++RN V +I ++ A N+ N++ N + A + Sbjct: 321 GQYVSRNCKEVYGVDIIPAAIEDANDNVKLNNLKNCTYVAGDANKIVPRWK--------- 371 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQTHKVE 343 K + VDPPR GL + ++ +I+Y+SCNP TL ++L+ L++ +K+ Sbjct: 372 ---KKGINFDVAIVDPPRVGLGPLAKNLLAVEAKKIVYVSCNPSTLARDLKVLTRKYKIR 428 Query: 344 RLALFDQFPYTHHMECGVLLTAK 366 R+ D FP T +E V L K Sbjct: 429 RIQPVDMFPGTAAVEAVVELIRK 451 >UniRef50_B3EU44 RNA methyltransferase, TrmA family n=2 Tax=Bacteroidetes RepID=B3EU44_AMOA5 Length = 468 Score = 307 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 66/397 (16%), Positives = 138/397 (34%), Gaps = 51/397 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDG--- 56 Y AQLA K ++ + + + P +YR + E+ + Sbjct: 85 QWQHIDYSAQLAAKEQLVKEKLIRLGRIVNPPVAKILAADPNQYYRNKLEYTFSNKRWLT 144 Query: 57 ----------DDLYHIIFDQQ-TKSRIRVDSFPAASELINQLMTAMIAGVRNNP------ 99 D + + +E N + A+ R + Sbjct: 145 QQEIQSDQPLDRYALGFHKPGYFDKVVDIQHCYLQAEPSNAIRLAVGQFAREHGYSFYDF 204 Query: 100 -VLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRA-------QNLNVH 151 + L + TT + + +V + + + + + ++ N + Sbjct: 205 RSHQGLLRNLIVRTTSTGEVMVIVQFGENQEGPIVHIMDFIQKKFPTLTSLQYIVNTKYN 264 Query: 152 LIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK 211 + Q +I E + + ++ SF Q N+ + + D+ Sbjct: 265 ETFYDLEVHCYAGQPFITEVI----DGLQWQIGPKSFFQTNSTQAKVLYQTVADLANLQG 320 Query: 212 GDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF 270 +L+ +LY G G + LAR +V+ E+ + ++ AQ N N + NV ++ Sbjct: 321 HELVYDLYTGVGTIAHFLARKARQVVGIEMIESAIKDAQINAQLNQLSNVSFWLGDMKDI 380 Query: 271 TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPET 328 + + + + + I DPPR+G+ + + + A +I+Y+SCNP T Sbjct: 381 FN-----------EELLKECGRPDIIVTDPPRAGMHPDVVQQLLQVAPEKIIYVSCNPAT 429 Query: 329 LCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 +++ L + + D FP+T H+E +L Sbjct: 430 QARDIHDLQDRYVLTHAQPIDMFPHTSHVENVAVLVK 466 >UniRef50_B9E7Z6 tRNA (Uracil-5-)-methyltransferase family protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E7Z6_MACCJ Length = 459 Score = 306 bits (785), Expect = 7e-82, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 140/386 (36%), Gaps = 41/386 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS------DLVPEVFRSPVSHYRMRAEFRIWHDGDD 58 L Y QL K ++ + ++ + YR + +F + G Sbjct: 86 QLQHLSYRGQLKYKKQIVEDALTKYAPHVKLDKIKDVKGMHNPYTYRNKNQFPVEKTGRK 145 Query: 59 LYHIIFDQQTKSRIRVDSFPAASEL-------INQLMTAM-----IAGVRNNPVLRHKLF 106 + ++ + + + I + + ++M+ + +R V RH + Sbjct: 146 VRAGLYKEHSNTLIDLHECIVQDNRTMHTTNEVKKIMSELNIDACKNPMREKGV-RHIVT 204 Query: 107 QIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEAL---RDALRAQNLNVHLIGRATKTKIEL 163 ++ T V+ H K D + L + N I +T + Sbjct: 205 RVALATGEIQVVFVTNTRHLKKQDLLAERVMRLAGVKSVALNINTEKTSIVMGDETIVIA 264 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNG 222 ++ I E+L + IY SF Q N + + D + + +++ +CG G Sbjct: 265 GEETIREQLQ----DHIYDLSAESFFQLNPRQTVVLYNEVRDAAALTGQENVVDAFCGTG 320 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 + LA N V + + + A YN N DN + A E Sbjct: 321 TIGIWLADNAGEVRGMDTNEDGIVNAIYNATLNGADNCKFEVGDASEKLNEWIE------ 374 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQTH 340 + + + I VDPPR+GL T K++ +Y SCNP TL K+L L++ Sbjct: 375 ------EGFYPDVITVDPPRTGLSEATIKLINEIKPKTFVYTSCNPSTLAKDLAHLTKAF 428 Query: 341 KVERLALFDQFPYTHHMECGVLLTAK 366 +VE + D FP T +E V LT K Sbjct: 429 QVEYIQPVDMFPQTAQVEAVVKLTRK 454 >UniRef50_B1MWX6 23S rRNA (Uracil-5-)-methyltransferase n=21 Tax=Lactobacillales RepID=B1MWX6_LEUCK Length = 498 Score = 306 bits (785), Expect = 7e-82, Method: Composition-based stats. Identities = 78/389 (20%), Positives = 142/389 (36%), Gaps = 47/389 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPF-------SDLVPEVFRSPVSHYRMRAEFRIWHDGDD 58 L Y AQLA K + + F DL + + YR +A+F + D Sbjct: 128 LEHMTYSAQLAFKKDVIAQSLEKFQPKGWSDYDLRDTIGMANPYEYRNKAQFPVRKIDDV 187 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQ 107 L ++ + + + + S +++ + + +N ++ + + Sbjct: 188 LSVGMYKRGSHELVDLPIVHTQSPATMKVLRTVRDLLDKLSVSIYNEDKNRGTVKTIVAR 247 Query: 108 IDYLTTLSNQAVVSLLYHK-------KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK 160 + + T ++ + + L Q + + N + +T Sbjct: 248 VSHTT---GDVQLTFVTNTDGFPGDVALIAAINQALPEVNGIFQNFNPGRTSLVWGEETI 304 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELYC 219 +DYI+E + ++ +F Q N + AL + L++ Y Sbjct: 305 KLWGKDYIEETVM----GKTFQLSPRAFMQLNHTQMTVVYNEALSALNLTHADKLVDAYA 360 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G L+LA V EI +V A N NHI N + AE Sbjct: 361 GVGTIGLSLADKAGEVRGMEIIPEAVDDANINAKINHISNAKYEVGTAEVLFPKWQA--- 417 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLS 337 + + + + VDPPR+GLD+ + + + +YISCN TL ++L L+ Sbjct: 418 ---------EGWLADALVVDPPRTGLDTALRREIIRTKPEKFVYISCNASTLARDLVDLT 468 Query: 338 QTHKVERLALFDQFPYTHHMECGVLLTAK 366 + +KV+ + D FP T E V LT + Sbjct: 469 KAYKVDYIQSIDMFPQTARWEGVVKLTRR 497 >UniRef50_A1U2U9 23S rRNA (uracil-5-)-methyltransferase rumA n=10 Tax=Gammaproteobacteria RepID=RUMA_MARAV Length = 449 Score = 306 bits (785), Expect = 7e-82, Method: Composition-based stats. Identities = 78/375 (20%), Positives = 146/375 (38%), Gaps = 32/375 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV-----SHYRMRAEFRIWHDG--DD 58 L +AQ+ K L+ A F + PE + +P+ YR +A + + + Sbjct: 89 LQHMSADAQIRFKENTLREHFAHFGGIEPEQWVAPMRSPDSLGYRRKARLGVRYVKARES 148 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + +++ +D I + + + + ++ Q++ A Sbjct: 149 VLVGFREKRNSFLTDIDRCVVLDPRIGERIEPLRELLHGMAAF-DRIAQVEVACGDDTAA 207 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIE-----LDQDYIDERLP 173 +V + +DD + E L +A +L+++L + T +D Sbjct: 208 MV----FRNMDDLVPDDREKLIAFGQAHDLHIYLQPKGPDTVHRIWPESGGRDDERLTYR 263 Query: 174 VAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNF 232 + ++ FTQ NA +N M+ A++ G +L+L+CG GNF+L LAR Sbjct: 264 MDEFDLTMAFHPMDFTQVNAGINRNMVHRAVEWLDVQPGERVLDLFCGLGNFTLPLARKG 323 Query: 233 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 +V+ E V + N N + NV+ G Sbjct: 324 GQVVGVEGDDAMVVRGRENARLNDLSNVEFHGADL------------HGDFTGQSWAKEG 371 Query: 293 CETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQ 350 + I +DPPRSG + + + RI+Y+SCNP TL ++ + +++ + + D Sbjct: 372 FDKILIDPPRSGAEEICKYLTAFGANRIVYVSCNPATLARDAGVMVRNGYRLVQAGVMDM 431 Query: 351 FPYTHHMECGVLLTA 365 FP+T H+E L Sbjct: 432 FPHTTHVESIALFER 446 >UniRef50_A4IK46 SAM-dependent methyltransferase n=8 Tax=Bacillaceae RepID=A4IK46_GEOTN Length = 463 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 86/391 (21%), Positives = 161/391 (41%), Gaps = 53/391 (13%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD----LVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 QYE QL K +++++ + + HYR + EF +G Sbjct: 92 WQHWQYEGQLRHKTEHVKALLEQHGFDPNIVRETIGMEHPWHYRNKMEFTFSPEG---LL 148 Query: 62 IIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQID 109 + +Q + I +++ A E I + + R + +LRH + + Sbjct: 149 GLHEQGNFRQIISLETCLIAGERIVKAAMEVARWARDHQLPGYHKDTHEGLLRHVMVRES 208 Query: 110 YLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDA-----------LRAQNLNVHLIGRATK 158 + T + +V+L + + E +Q A+ L + L +N +A + Sbjct: 209 FAT---GEVMVALFATEAPEGELKQAADDLTERITKALPEVKSLLWLENRAWADRIQAEQ 265 Query: 159 TKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLEL 217 T + +D+I + L YR ++F Q N +++E AL++ K +++L Sbjct: 266 THVLAGRDFIYDEL----CGFRYRLWFDTFFQTNPVQAAKLVELALEMGKPQPHEKMIDL 321 Query: 218 YCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV 277 +CG G FSL A+ + EI + S+ +A+ N N IDN + A Sbjct: 322 FCGVGTFSLPFAKRVKALAGIEIVETSIESAKRNAKDNGIDNTYFLARDARRGI------ 375 Query: 278 REFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLET 335 + + + E + +DPPRSG + + + RI+Y+SCNPET ++ Sbjct: 376 ------DEVLEQFGRPELLLLDPPRSGAGGKVMRKIGRSQPERIVYVSCNPETFAADIAE 429 Query: 336 LSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 L + ++ + D FP+T H+E L++ Sbjct: 430 LVPFGYTLKTVQPVDMFPHTAHVELVALMSR 460 >UniRef50_A9BFH8 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BFH8_PETMO Length = 387 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 161/392 (41%), Gaps = 58/392 (14%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVP-----EVFRSPVSHYRMRAEFRIWHDGDDLYHI 62 YE QL K + S+ + + P + YR + E+ ++ D + Sbjct: 17 HINYEEQLKIKEKNVLSLFDQY-QIKPNNYHGITPSVDIYEYRNKMEYSFGNEYKDGPLV 75 Query: 63 IFDQQTKSRIRV---DSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQI 108 + + + V N ++ ++ LR+ + Sbjct: 76 LGLRGKGKKFDVYYTKDCKLVDYDFNNIVIKTREFFLKKNIPFRNYKNHSGFLRNLGIRK 135 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLI-------------GR 155 T + +++L+ LD+ + QE E ++ + NL +++ + Sbjct: 136 GLKT---GEILLNLVTS--LDNTYYQEVETWKEEMLNTNLKGNIVSIIQSKTESKANVVK 190 Query: 156 ATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL 215 A + +I +DY E++ ++ ++ SF Q N + + AL + S + Sbjct: 191 ADEMEILYGRDYFYEKI----LDLTFKIGPFSFFQTNTKGTEVLYQTALSYAENS-DVVY 245 Query: 216 ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN 275 + Y G G SL LA +V EI K +V AA+ N N+I+NV+ + ++F + + Sbjct: 246 DFYSGTGTISLLLANKAKKVYGIEIIKEAVEAAKQNAILNNINNVEFVNKDVKDFVKQQS 305 Query: 276 GVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNL 333 + + I VDPPR+GL K ++ + +I+YISCNP+TL NL Sbjct: 306 STE-------------KPDYIVVDPPRAGLHPNLIKFIKTQQFNKIIYISCNPKTLIPNL 352 Query: 334 ETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 + LS + + L D FP+T H+E VL+T Sbjct: 353 KELSDLYTISDFHLVDMFPHTDHVESVVLMTR 384 >UniRef50_C9M703 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M703_9BACT Length = 454 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 140/387 (36%), Gaps = 41/387 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE-----VFRSPVSHYRMRAEFRIWHDGDDL 59 L QL K + ++ + + YR +A F + Sbjct: 76 QLQHASRSLQLELKSLIVEDSLRRLGGFDLPEKISCLPSPVQWGYRNKASFPVRRTASGE 135 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-------LRHKLFQIDYLT 112 F T + +++ P + QL + V++ R L I Sbjct: 136 TTGFFKMGTHDIVPIETCPLVCDQAAQLYGTLRGLVQDGGFSAYDEKTGRGWLRHIVVRA 195 Query: 113 TLSN-QAVVSLLYHKKLDDE----WRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDY 167 + + L+ K D E R L+ A + I + +I D+ Sbjct: 196 STYGSGLLALLVVTSKPDQEGMASLRDLWRYLQSRQPALSGLALSINPSRGNRIIGDETV 255 Query: 168 ---IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNF 224 +R+ SF Q N A ++ ++A + LELYCG G+ Sbjct: 256 PVAGTDRVHECLGPFRLEYDGTSFFQVNTAQAARLFDYASSLV-PDGSRTLELYCGVGSL 314 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 + LAR V A EI P+V A+ N++ N++ NV++ AE+ + Sbjct: 315 TAFLARKSRAVTAAEIWPPAVEMARKNMSGNNLTNVELRLSPAEKLPSDLFE-------- 366 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETL-SQTHK 341 + + VDPPR+G D E + I+Y+SCNP TL ++ L S ++ Sbjct: 367 -------GQDCLVVDPPRTGCDGEMLARLAGTSIKSIVYVSCNPATLARDAARLQSAGYQ 419 Query: 342 VE--RLALFDQFPYTHHMECGVLLTAK 366 + + FD FP T H+E LL K Sbjct: 420 LVTSSVRAFDMFPQTSHVETVALLCRK 446 >UniRef50_A4RQV8 Predicted protein n=3 Tax=Ostreococcus RepID=A4RQV8_OSTLU Length = 536 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 72/405 (17%), Positives = 143/405 (35%), Gaps = 46/405 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPF--------SDLVPEVFRSPVSHYRMRAEFRIWHDGD 57 Y+AQ+ K R+ ++A + + V S YR + EF Sbjct: 133 WQHVNYDAQVGHKRNRVVDVLARIYKAGEDAEAKVGACVGADETSRYRNKMEFAFASGTR 192 Query: 58 DLYHIIFDQQT--KSRIRVDS-FPAASELINQLMTAMIAGVRN-------------NPVL 101 + + S + + SE ++++ A+ + L Sbjct: 193 GKTVVGLRPRGANDSVVDLSGGCLLQSEEADRVLAAIRETLERADGRLEAFDRTSGEGTL 252 Query: 102 RHKLFQI-DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK 160 R + +V L ++ L D + V ++ + T Sbjct: 253 RSVTIRTAGGERGGEKAVMVDLATTASPNELKTGPLAGLIDVVSKVPGVVSVVHTSGGTT 312 Query: 161 IELDQD------YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD- 213 + + + +L + + SF Q N +++ + S Sbjct: 313 TKAGSTKKVEAVFGENKLVETLNGIDFELSSASFFQTNTEQAARLVRQVREACAFSGDKS 372 Query: 214 --LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT 271 +L+L+CG G L++A + RV+ E+ +V A+ N N+I N + R+ Sbjct: 373 EIVLDLFCGVGTMGLSVASDCSRVMGWEVVPEAVKDAKRNAELNNITNAKFYRVDLARLN 432 Query: 272 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETL 329 + +G + + + DP R G+DS +++ RI+Y+SCNP T Sbjct: 433 PSKGPKGLLTTPKG--KELPMPDIVITDPARPGMDSALIAILRTIGARRIVYVSCNPATQ 490 Query: 330 CKNLETLSQT--------HKVERLALFDQFPYTHHMECGVLLTAK 366 ++L L+ ++++ + D FP+T H+E +L K Sbjct: 491 ARDLLLLTAPSEGADDVAYELKTVTPVDMFPHTTHVESVAVLERK 535 >UniRef50_D0MFU4 RNA methyltransferase, TrmA family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFU4_RHOM4 Length = 466 Score = 303 bits (777), Expect = 6e-81, Method: Composition-based stats. Identities = 76/398 (19%), Positives = 144/398 (36%), Gaps = 51/398 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDG---- 56 +YEAQL K + + + P + + YR + EF D Sbjct: 83 WQHVRYEAQLEAKRQSVYEALVHHGGFEDVEVRPTLPSPRLYGYRNKMEFSFSADRWLTP 142 Query: 57 ----------DDLYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGV---------- 95 + I ++ + +L+ + A Sbjct: 143 EEIASGRPLDRHFAVGLHVPGNFYKVIDLEECHLPEPITVRLLNELRAFFKAKGWEPWDI 202 Query: 96 -RNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIG 154 R+ LRH + + T + + +V+L+ + + + L++ V+ I Sbjct: 203 RRHEGYLRHLVIRTG---TRTGEVMVNLVTSRYDEARMAELGAFLQEQFPEVTTLVNTIN 259 Query: 155 RATKTKIELDQDY---IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK 211 + Y + + ++F Q N ++ E A ++ Sbjct: 260 SRPAQVSYGEATYTIFGPGVIHDCIGPFRFEIAPDAFFQTNTEQAERLYEVARELAALRP 319 Query: 212 GDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF 270 DL+ +LYCG G S+ +A + V+ E+ +V A+ N AAN I N + E Sbjct: 320 DDLVYDLYCGTGTISIFIAPHVRHVVGVELVASAVENARANAAANGITNCTFVAGDLLEV 379 Query: 271 TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPET 328 + + + VDPPR+G+ + + + R +Y+SCNP+T Sbjct: 380 L-----------TPAFVRTHGRPDVVIVDPPRAGMHPKVVRRIGQLRPERFVYVSCNPQT 428 Query: 329 LCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 ++L+ L +++E + D FP+T H+E V L A+ Sbjct: 429 QARDLKLLRDLYRIEAVQPVDLFPHTDHVESVVALRAR 466 >UniRef50_Q8DNH6 Uncharacterized RNA methyltransferase spr1717 n=88 Tax=Lactobacillales RepID=Y1717_STRR6 Length = 451 Score = 303 bits (777), Expect = 6e-81, Method: Composition-based stats. Identities = 69/387 (17%), Positives = 136/387 (35%), Gaps = 44/387 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-------LVPEVFRSPVSHYRMRAEFRIWHDGD 57 + Y+ QL K L + F+ + P + +YR + +F+ + Sbjct: 83 QIMHLHYDKQLEFKTDLLHQALKKFAPAGYENYEIRPTIGMQEPKYYRAKLQFQTRKFKN 142 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVL----------RHKLFQ 107 + ++ Q + + + + + + + + + R + + Sbjct: 143 QVKAGLYAQNSHYLVELKDCLVQDKETQVIANRLAELLTYHQIPITDERKVLGVRTIMVR 202 Query: 108 IDYLTTLSNQAVVSLLYHKKLD-----DEWRQEAEALRDALRAQNLNVHLIGRATKTKIE 162 + Q + ++ +++L+ E ++ + N KT+I Sbjct: 203 ---RARKTGQVQIIIVTNRQLNLTQLVKELVKDFPEVVTVAVNTNTAKTSEIYGEKTEII 259 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGN 221 Q+ I E + +F Q N + A+ K D L++ YCG Sbjct: 260 WGQESIQE----GVLNYEFSLSPRAFYQLNPEQTEVLYSEAVKALDVDKEDHLIDAYCGV 315 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G A A+ + +I ++ A+ N DN AEE Sbjct: 316 GTIGFAFAKKVKTLRGMDIIPEAIEDAKRNAKRMGFDNTHYEAGTAEEIIPRWY------ 369 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQT 339 + Y+ + + VDPPR+GLD + + +++YISCN TL ++L L + Sbjct: 370 ------KEGYRADALIVDPPRTGLDDKLLDTILTYVPEKMVYISCNVSTLARDLVRLVEV 423 Query: 340 HKVERLALFDQFPYTHHMECGVLLTAK 366 + + + D FP+T E V L K Sbjct: 424 YDLHYIQSVDMFPHTARTEAVVKLIKK 450 >UniRef50_Q7MVG9 Uncharacterized RNA methyltransferase PG_1095 n=72 Tax=Bacteria RepID=Y1095_PORGI Length = 465 Score = 302 bits (775), Expect = 9e-81, Method: Composition-based stats. Identities = 69/404 (17%), Positives = 141/404 (34%), Gaps = 59/404 (14%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDLY 60 YE QL K ++ + + P + +YR + EF + L Sbjct: 74 WQHIPYEIQLRAKEQQVTDALVRLGKVEVEEMQPILGSEQTEYYRNKLEFTFSNKRWLLP 133 Query: 61 -----------------HIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVRNNPV-- 100 + + +++ +++ + +P Sbjct: 134 EEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIRLFIREYCMQDPERY 193 Query: 101 ----LRH---KLFQIDYLTTLSNQAVVSLLY-------HKKLDDEWRQEAEALRDALRAQ 146 LR+ + + TT + + +V +++ + L + + L Sbjct: 194 PFFDLRNQEGLMRTLMIRTTSTGELMVVVVFFRDDVAAREALLAAVAERFPQITSLLYVI 253 Query: 147 NLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDV 206 N + + + ++YI+E + + ++ SF Q N+ Q+ A + Sbjct: 254 NTKCNDTIGDQEVLLYHGREYIEEEME----GLKFKIGAKSFYQTNSRQAYQLYRIAREF 309 Query: 207 TKGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRM 265 + +L+ +LY G G + +A RV+ E ++ A+ N N I+N Sbjct: 310 AGLTGDELVYDLYTGTGTIANFVAGQAHRVIGIEYVPEAIEDARTNSLLNGIENTLFYAG 369 Query: 266 AAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYIS 323 ++ + + + + DPPR+G+ + A RI+Y+S Sbjct: 370 DMKDIL-----------TNDFIEQHGRPDVVITDPPRAGMHESVIDAILFAAPRRIVYVS 418 Query: 324 CNPETLCKNLETL--SQTHKVERLALFDQFPYTHHMECGVLLTA 365 CNP T ++L L ++ + D FP+THH+E VLL Sbjct: 419 CNPATQARDLALLMADGRYRAVKSRPVDMFPHTHHVENVVLLVR 462 >UniRef50_A8UYU1 RNA methyltransferase (TrmA-family) protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UYU1_9AQUI Length = 408 Score = 302 bits (775), Expect = 9e-81, Method: Composition-based stats. Identities = 74/367 (20%), Positives = 150/367 (40%), Gaps = 42/367 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDL----VPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 YE Q+ K L+ + + + + +YR R +F+ D Sbjct: 76 FQHINYEKQVEIKKEILEETLQRIGKINKDTDKVIPSANPFNYRNRVQFKF----DGKNF 131 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVS 121 + ++ + ++S A + IN L+ + +NNP ++ ++ N+ ++ Sbjct: 132 GFYKLKSNEVVDIESCDIADKNINNLIPTLKNLAKNNP----QVEELHIFHHPDNKPMLK 187 Query: 122 LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIY 181 ++ L + E L D + + K + + R + Y Sbjct: 188 IV----LKENLFMNIENLLDTFAGIGVYI-----GNKRVKLEGKSFTFYR----AGKFNY 234 Query: 182 RQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIA 241 R +SF Q N +++ + + ++YCG G F+L ++ +V E + Sbjct: 235 RVSIDSFFQVNKYQLENIVDEVISEIPKDSQCIGDIYCGVGLFTLPASKKAKKVFGIEAS 294 Query: 242 KPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPP 301 K +V AQYN+ ++I N + + E+ + Y +T+ DPP Sbjct: 295 KSAVKDAQYNVKVHNIGNAKFYQKVVEKSADIIF--------------GYNPDTLIFDPP 340 Query: 302 RSGLDSETEK---MVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHME 358 R+G+ + +++ RI+Y+SCNP T +++ LS+ +++++ L D FP THH+E Sbjct: 341 RTGIPKNIIQKLLQLKSLKRIIYVSCNPSTASRDINLLSEKFELKKVKLIDMFPQTHHIE 400 Query: 359 CGVLLTA 365 +L Sbjct: 401 SIFVLDK 407 >UniRef50_C0QRS2 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Persephonella marina EX-H1 RepID=C0QRS2_PERMH Length = 421 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 81/371 (21%), Positives = 151/371 (40%), Gaps = 38/371 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 YE Q+ K L + + +YR R + +I + Sbjct: 76 YQHITYEKQVEIKAEILLETLNRIGRLNIDRIDKIYPSKKPFNYRNRTQLKIRGEK---- 131 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 + ++++ I +DS E IN +++ + ++ L + Q+ ++ +A+V Sbjct: 132 IGFYMRESRQIINIDSCLLLKEDINGMISGVREILK---FLIFQPEQVHIYSSSDGEALV 188 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRAT---KTKIELDQDYIDERLPVAGK 177 +Y K++ + + LR L + + R K + L + YI E Sbjct: 189 KFVYQKRVR-RFPLGLKHLRSFLSEKLKGAGIYHRKDDLLKRDVLLGESYIYEEY----G 243 Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLA 237 + +R +SF Q N +L+ L G ++L+CG G +L AR + Sbjct: 244 GIKFRVSMDSFFQVNVYQVENLLDAVLQNI-GDHEKAVDLFCGVGTLTLPSARYIKEIYG 302 Query: 238 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 E +V A +N N I N + RM A + + + + + Sbjct: 303 IESNPYAVNDANHNRKLNRIKNAKFFRMDANRSGGFIAEL--------------KPDLVI 348 Query: 298 VDPPRSGLDSETEKMVQ---AYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYT 354 +DPPR+G+ + + + RI+Y+SCNP TL ++L L + + VE++ + D FP T Sbjct: 349 IDPPRTGVSDDLVRTFLDTDSIKRIIYVSCNPSTLARDLGYLKERYSVEKVYMIDMFPQT 408 Query: 355 HHMECGVLLTA 365 +H+E V+L Sbjct: 409 YHIESVVVLQK 419 >UniRef50_Q72DK5 Uncharacterized RNA methyltransferase DVU_0924 n=3 Tax=Desulfovibrio vulgaris RepID=Y924_DESVH Length = 468 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 136/386 (35%), Gaps = 37/386 (9%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDD-L 59 Y AQLA K ++ + + P + +R + EF D + L Sbjct: 85 WQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPLQQGFRNKMEFAFTTDDREML 144 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQI 108 + + + + V S + +++T R + R + + Sbjct: 145 HLGLRRRGGHEVVDVTSCGLQTATTCRVVTTARDIARASGLPGWDDAAHRGFWRFLVVRE 204 Query: 109 DYLTTLSNQAVVSLLYHKKLDDE--WRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD 166 Q +V + + E R ALR A+ VH I D Sbjct: 205 PAR---GGQCLVQCITAPHPEAEHVARAFFTALRQAVPEVTGCVHSIRSQNSQVAYGDAT 261 Query: 167 YIDE---RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNG 222 E L + ++F Q N + + S + + +LYCG G Sbjct: 262 VFTEGEIVLTEKLGAIELDFGHDTFLQTNTRATELLYGEVERMAGLSGREHVWDLYCGVG 321 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 + +L LA + + E SV AAQ N A + + ++ + + Sbjct: 322 SIALWLAEHAATICGMEATPASVEAAQRNAQAAGCTHCDFVAGDVRALLRSRSKGK---- 377 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQTH 340 + + + DPPR+G+ + + A RI+Y+SC+P T+ +++ L Q + Sbjct: 378 -----AQEPIPDVVVTDPPRAGMHPDVIDALLQTAPARIVYVSCDPATMARDVGLLMQRY 432 Query: 341 KVERLALFDQFPYTHHMECGVLLTAK 366 + D FP+T H+E VLL+ K Sbjct: 433 TLHEARPVDLFPHTPHVETVVLLSNK 458 >UniRef50_A1ARE6 RNA methyltransferase, TrmA family n=4 Tax=Desulfuromonadales RepID=A1ARE6_PELPD Length = 493 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 77/384 (20%), Positives = 144/384 (37%), Gaps = 38/384 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 L Y Q K + + + L P + +++YR I + Sbjct: 116 PLIAMNYCDQAEWKRQFVLRQLDAYRGLDGIELHPLLSPRRLTNYRTTVRLTIAGKYAEP 175 Query: 60 YHIIFDQQTKSRIRVDSFPAASEL-----------INQLMTAMIAGVRNNPVLRHKLFQI 108 Y IF + + + + P L I++L + + +LR+ + ++ Sbjct: 176 YIGIFRRSSHDVVDLCDCPIHHHLVNRVVEVVRRGISRLKVPVYSPRNRVGLLRYLVVRV 235 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYI 168 + +A+V + ++ +E A +R+ L + + + I D+ Sbjct: 236 ---SEAEQKAMVVFVTARRSYNEIHHLARYVREQLPEVEVVAQNVNSSEGNVIMGPVDHF 292 Query: 169 D---ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNF 224 L E+ SF Q N + E + + + + +L+LYCG G Sbjct: 293 LTPKHHLTERIGEVSLMISPRSFLQVNRDGACLIYERVAEWARLTGRETVLDLYCGIGGI 352 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 +L LAR RV+ E+ + +V A+ N N I N E +L+ Sbjct: 353 ALTLARRARRVIGVEVVEAAVEDARRNARMNGISNCVFQAGDVAE------------QLE 400 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQ-THK 341 + + + ++PPR G D + + V A +LY+SC+P+TL ++L L + Sbjct: 401 ELAEDGEGVDVVVLNPPRKGCDEQVLRQVAALGPRTVLYVSCSPQTLARDLNLLKSLGYV 460 Query: 342 VERLALFDQFPYTHHMECGVLLTA 365 + D FP+T H+E L Sbjct: 461 CVEVQPVDMFPHTMHVENVARLEK 484 >UniRef50_C8WNQ3 RNA methyltransferase, TrmA family n=2 Tax=Coriobacteriaceae RepID=C8WNQ3_EGGLE Length = 438 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 77/416 (18%), Positives = 142/416 (34%), Gaps = 76/416 (18%) Query: 7 PTE--QYEAQLAEKVVRLQSMMAPFSD---LVPEVFRSPVSHYRMR-------------- 47 Y QLA K R+ + A +D L P + YR + Sbjct: 32 QHVGVPYAQQLASKDTRVAELFADVADASALRPILGMDEPYCYRNKVVSPYAPGRKLQGS 91 Query: 48 --AEFRIWHDGDD-------------LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMI 92 A D + ++ + + D +E +++ + Sbjct: 92 ANARAGKGRDARGGRDGKRAQKPRREILCGMYAAGSHRIVPTDGCLIENEEAKRIIRTVR 151 Query: 93 AGVRNNPV-----------LRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALR- 140 + + LRH + ++ + S + +V+L+ + + R L Sbjct: 152 DLMPRFGIEPYREDSGTGFLRHAVVRVGH---TSGEILVTLVTNGRAFPASRAFCRELVR 208 Query: 141 ------DALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAA 194 ++ N + + + +I ++L + +R SF Q NA Sbjct: 209 RCPRITSVVQNVNERQTNVILGEREQTLYGPGFILDKL----CGLSFRISSQSFYQVNAV 264 Query: 195 MNIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNI 252 + E A+D+ ++ YCG G L A+ +V+ + +V A+ N Sbjct: 265 QTEVLYERAIDLAGFTGSETAIDAYCGTGTIGLVAAKRGARQVIGVDTVASAVRDARENA 324 Query: 253 AANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKM 312 N ++N + A F + + + + +DPPR+G E Sbjct: 325 KHNGVENARFAVGDAGAFMRERAAAGDA------------VDVLLMDPPRAGSSEEFLAA 372 Query: 313 V--QAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 A RI+YISCNP T ++L L Q + V + D FP+T H+E L+ Sbjct: 373 AVTLAPRRIVYISCNPTTQVRDLAFLRQRGYAVRTVQPVDMFPHTDHIETIALVER 428 >UniRef50_Q74CC6 Uncharacterized RNA methyltransferase GSU1748 n=6 Tax=Geobacter RepID=Y1748_GEOSL Length = 438 Score = 301 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 145/372 (38%), Gaps = 25/372 (6%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRS-----PVSHYRMRAEFRIWHDGDDLY 60 +Y+AQ K + F + + YR RA+F+I G L+ Sbjct: 79 WQHLRYDAQAEAKERIFVDTLWRFGRVERDAVAPFAVADNPFGYRCRAQFKIRWSGGRLH 138 Query: 61 HIIFDQQTKSRIRVD-SFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + + + I IN + + + + K+ QID T + Sbjct: 139 MGFYRRGSHYVIDAPAECVICDPAINLTLRDLRLVLPDF-SEPDKIPQIDAATGEDGHVL 197 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLP---VAG 176 + + Y +++ L + GR D + +P G Sbjct: 198 LVVHYIGDNPGRAADFFRSIQPHLASVTGIHLQCGRKDSIMHVWGVDSLSYTVPGLGDQG 257 Query: 177 KEMIYRQVENSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARNFDRV 235 + + F+Q N N ++ AL + G +L+L+CGNGNFSL LA ++ Sbjct: 258 RPLSLSFRRGGFSQVNYRQNRVLVSKALHLAGVGPGRRVLDLFCGNGNFSLPLASGGAQL 317 Query: 236 LATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCET 295 + E PS+ A+ N N I +V+ I + A + T+ + +T Sbjct: 318 VGVEDYGPSIDDARKNADFNGIGDVEFIAIDAADGTRRLRAA------------GEHFDT 365 Query: 296 IFVDPPRSGLDSETEK-MVQAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPY 353 + +DPPR+G + + A RI+Y+SC+P TL ++L L + ++V D FP Sbjct: 366 VILDPPRTGARDAVGEVAILAPERIVYVSCDPPTLGRDLGVLRKAGYRVVGSHGVDMFPQ 425 Query: 354 THHMECGVLLTA 365 T+H+E LL Sbjct: 426 TYHIESVTLLIR 437 >UniRef50_P73374 Uncharacterized RNA methyltransferase sll1967 n=20 Tax=Cyanobacteria RepID=Y1967_SYNY3 Length = 463 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 145/389 (37%), Gaps = 51/389 (13%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 Y+ Q+ K ++ + L P + YR +A + + Sbjct: 93 QWQHLDYQFQVESKQQQIIDALERIGGFTTLPLEPLLQSPASLGYRNKATYPLSRSKTGQ 152 Query: 60 Y-HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQ 107 + + + + ++ P + +N L+T + + + LRH + Sbjct: 153 VQAGYYRKGSHRLVNINQCPVQDDRLNLLLTEVKKDIENRGWSIYDEEKKQGKLRHLSLR 212 Query: 108 IDYLTTLSNQAVVSLLY-HKKLDDEWRQEAEALRDALRAQNLNVHLIGR------ATKTK 160 I T + +++L+ HK L D Q E L + +++ +T Sbjct: 213 IGQRT---GEMLLTLISAHKGLPDLEEQAGEWLERYPDLGGICLNIQPEPNNRIFGDETV 269 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYC 219 + + E+ ++ + N+F Q N+ +L +LL + Y Sbjct: 270 VIAGRGICREKFA----DLSFSLGANTFFQVNSGAAELLLTRLQQALNLQGAELLVDAYA 325 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G F+L LAR + +A E+ + SV Q N N I NV + E ++ + Sbjct: 326 GVGTFTLPLARQVRQAIAIEVNQDSVHQGQRNAEINQIANVDFLAGTVETVLPTLSEI-- 383 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLS 337 + + +DPPR G E + + Q +I YISC P TL ++L+ L Sbjct: 384 -------------PDVLLLDPPRKGCAPEVLREIIRQRPEKIAYISCQPPTLARDLKFLC 430 Query: 338 QT--HKVERLALFDQFPYTHHMECGVLLT 364 + + + D FP T H+EC V+L Sbjct: 431 AEGFYGITWVQGCDFFPQTAHVECAVILK 459 >UniRef50_A4A8C7 tRNA (Uracil-5-)-methyltransferase n=4 Tax=Gammaproteobacteria RepID=A4A8C7_9GAMM Length = 373 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 160/362 (44%), Positives = 220/362 (60%), Gaps = 8/362 (2%) Query: 1 MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 M P E Y A+K ++ M E F SPV YR+RAEFRIWHDGDD+ Sbjct: 1 MLPWQTDPENYATLFAKKCSDVEKDMLTLRLPPAERFASPVESYRVRAEFRIWHDGDDID 60 Query: 61 HIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 +++FD ++ + + F A I LM ++A +++ PVLR KLFQ +++ T + + + Sbjct: 61 YVMFDPGHPRTPVVIKDFAPALAPIRTLMPQLLAFLKSRPVLRRKLFQAEFMATTTGELL 120 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 ++L+YH+ LDD W EA AL +V L+GR+ K K + +D++ + V G+ Sbjct: 121 LTLIYHRPLDDAWEDEARALAREF-----DVSLVGRSRKQKRIIGRDFVVDAFTVDGRCY 175 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATE 239 YRQ E SF QPNA +N ML WA GDLLELYCGNGNF+L LA F V+ATE Sbjct: 176 RYRQYEQSFVQPNAPINEAMLTWAWQQGASCPGDLLELYCGNGNFTLPLASRFPAVIATE 235 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE--TIF 297 ++K AA NI N +DNVQ+IR++AEE ++AM+GVREF RL + + T+F Sbjct: 236 LSKSGTRAALENIRDNGVDNVQVIRLSAEEVSEAMSGVREFRRLATLPKPLGDYDLRTVF 295 Query: 298 VDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHM 357 VDPPR+GLD T V+ + ILY+SCNP+TL N+E L+ +H V ALFDQFPYT H+ Sbjct: 296 VDPPRAGLDPGTLDCVRDFEAILYVSCNPKTLKSNIEALTDSHVVTHYALFDQFPYTPHI 355 Query: 358 EC 359 E Sbjct: 356 ES 357 >UniRef50_B0S2X4 RNA methyltransferase n=2 Tax=Finegoldia magna RepID=B0S2X4_FINM2 Length = 442 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 154/386 (39%), Gaps = 48/386 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV-SHYRMRAEFRIWHDGDDLYHIIF 64 +Y+ + K L + D SP+ YR + E+ ++ Sbjct: 80 YQKLEYDVECDLKKKTLTELYKDIYDEDIIFHPSPILQGYRNKMEYTFGDSVKGGPLVLG 139 Query: 65 DQQTKSRIRVDS---FPAASELINQLMTAMIAG-----------VRNNPVLRHKLFQIDY 110 + E N++ A+ +++ +LRH + + + Sbjct: 140 LHTKNKFYEITDTVDCNIIDEGFNKIRQAVQEYFRDKNYEFFKKIKHTGLLRHFIIRKSF 199 Query: 111 LTTLSNQAVVSLLYHKKLDD--EWRQEAEALRDAL----RAQNLNVHLIGRATKTKIELD 164 ++ +++L+ D ++ + A+ + + + N N+ K ++ Sbjct: 200 ---SDDEYMINLVTTSDKFDVNDFVEFAKQIDNRIVSIYHTINDNISDAVIVDKLELLHG 256 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT-KGSKGDLLELYCGNGN 223 ++Y+ E++ + +R SF QPN A Q+ AL++ S ++ +LYCG G Sbjct: 257 KEYLTEKI----NGLEFRISPFSFFQPNPAQAEQIYTRALELAGDLSGKNVYDLYCGTGT 312 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 + A+ + V+ EI + +V A+ N N + N + I F + + Sbjct: 313 IAQIFAKKSESVIGVEIVEEAVEKAKENAELNGLTNTEFICDDCLNFMEKVE-------- 364 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTH 340 + + + +DPPR G+ + + + +YISCNP T +L+ + + Sbjct: 365 --------KKDVVVLDPPRDGIHPKAIDRLIDINPDKFIYISCNPITQRMDLDKFIEKGY 416 Query: 341 KVERLALFDQFPYTHHMECGVLLTAK 366 +++ L FDQFP T+H E VLL+ K Sbjct: 417 EIKSLEFFDQFPRTYHCEAVVLLSRK 442 >UniRef50_Q9CDP0 Uncharacterized RNA methyltransferase ywfF n=6 Tax=Streptococcaceae RepID=YWFF_LACLA Length = 513 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 73/412 (17%), Positives = 142/412 (34%), Gaps = 61/412 (14%) Query: 1 MTPEHLPTEQYEAQLAEKVVRLQSMMAPF-------SDLVPEVFRSPVSHYRMRAEFRIW 53 M+ H+ Y QL K ++ + + +L + YR + +F++ Sbjct: 80 MSQSHIMHLSYPMQLEFKRDVMRQALEKYKPAGWRNYELRATLGMENTLGYRNKLQFQVR 139 Query: 54 HDGDDLYH-IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV----------RNNPVLR 102 D ++ + T + +D+ +++ + + R +R Sbjct: 140 RLNDGTVIAGLYQEGTHHLVNLDNCLVQDPKTQEIINHICRLIEKFDLPVYDERKIGGIR 199 Query: 103 HKLFQIDYLTTLSNQAVVS-------------------------LLYHKKLDDEWRQEAE 137 + + T V+ + K+ +E E Sbjct: 200 TVMVRRSQKTGEVQIIFVTSTPIILDGQVWPELREEPSKRQKNSFVKFDKMLSALTEEFE 259 Query: 138 ALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNI 197 + + +T+I ++ E + + + +F Q N+ Sbjct: 260 EIVTVAVNFHPRKTSEIYGERTQILFNEK---ETITEGVLDYEFELSPRAFYQLNSEQAN 316 Query: 198 QMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANH 256 + A+ K D +++ YCG G A+A+ V +I S+ A+ N Sbjct: 317 VLYGEAVKALNPKKDDRVIDAYCGVGTIGFAVAKKVKSVHGMDITPESIFDARENAKRLG 376 Query: 257 IDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY 316 + N AE N ++ + VDPPR+GLD + + + Sbjct: 377 LKNCHYEIGKAERIIPNWN------------KSGHRATAMIVDPPRTGLDDALLETITKF 424 Query: 317 P--RILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 P +++Y+SCN TL K+L L+ +KVE + D FP+T E V LT + Sbjct: 425 PPEKMVYVSCNVSTLAKDLVVLANFYKVEYIQSVDMFPHTARTEAVVKLTKR 476 >UniRef50_B9M217 RNA methyltransferase, TrmA family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M217_GEOSF Length = 437 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 78/374 (20%), Positives = 145/374 (38%), Gaps = 28/374 (7%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVF-----RSPVSHYRMRAEFRIWHDGDDL 59 + +Y +Q+ EK + ++ + + PE YR R + ++ + G Sbjct: 78 NWQHVEYSSQIMEKTLIFADLLWRAARISPETVLPLLRAPEPYGYRSRVQLKVNYQGGKT 137 Query: 60 YHIIFDQQTKSRIRVD-SFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + ++ + + + IN + ++ + P + QID Sbjct: 138 RLGFYRPKSHQVVDIPGHCAITHKSINDTLESLRLLMEGCPDPGNI-SQIDIARGDDESI 196 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVA--- 175 V + + E + R+ I T +++ R+ Sbjct: 197 SVIVNHAGASVAEVSEYLLQHREISDLIGSMF--IRHKNSTTSIFGAEHLSYRISGNTLP 254 Query: 176 -GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFD 233 G E +++F+Q N N+Q++ D + + +L+LYCGNGNFS+ LA Sbjct: 255 GGSEKTLFFSKDAFSQINYQQNMQLIRVVSDFAALTGKEKVLDLYCGNGNFSIPLADKAA 314 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 V E +PS+A A+ N N + N+ + + + RE Sbjct: 315 HVTGFEGYEPSIADARKNAEWNGVTNISFHCSDSAAAVKKLAAARE------------TF 362 Query: 294 ETIFVDPPRSGLDSETEKM-VQAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQF 351 + + +DPPR+G + RI+Y+SC+P TL ++L L + +V + D F Sbjct: 363 DVVVLDPPRNGAAEVMHHIQALNADRIIYVSCDPATLARDLGILKKNGFQVINIQGVDMF 422 Query: 352 PYTHHMECGVLLTA 365 P T+H+E LLT Sbjct: 423 PQTYHLESVTLLTK 436 >UniRef50_Q10VH2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10VH2_TRIEI Length = 485 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 72/421 (17%), Positives = 145/421 (34%), Gaps = 82/421 (19%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 YE QL K ++ + + P + YR + + + + Sbjct: 86 QWQHVGYEYQLQAKQNQVIQALERIGGLKLPEVDPTLASVSTFGYRNKVTYPLSISNEGE 145 Query: 60 Y-HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQ 107 + + + I ++ P + N L+ + + + +LRH + Sbjct: 146 VKAGYYQKGSHKLINLNQCPIQDQRFNPLLKEIKQDITRRKWKIYDEHKRIGILRHLSLK 205 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDE-------------WRQEAEALRDALRAQNLNVHLIG 154 I T + +++L+ + ++ W ++ L N Sbjct: 206 IGEKT---GEIILTLVVNGSEENPEKLLPGITVQAQKWLEDYSRLVGVCLNYNSKATNTI 262 Query: 155 RATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL 214 +T + Y+ E+ + ++ N+F Q N +++E + S ++ Sbjct: 263 FGQQTVCVAGRFYVREKFS----GLEFQLTPNTFFQVNTKTTEKLVEIVIQELALSNSEI 318 Query: 215 L-ELYCGNGNFSLALARNFDRV-------------------------LATEIAKPSVAAA 248 + + YCG G F L+LA+ +V + E+ ++ A Sbjct: 319 IVDAYCGVGTFCLSLAKYLQQVDINYNESLNIVTEDLSEIKLRKSMVIGLEVQGVAIEQA 378 Query: 249 QYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSE 308 ++N NH+ NV E + + + + +DPPR G D Sbjct: 379 KFNAKINHLTNVHFYEGKVERLLPQLE---------------VKPDIVLLDPPRKGCDRS 423 Query: 309 TEKMVQA--YPRILYISCNPETLCKNLETLS--QTHKVERLALFDQFPYTHHMECGVLLT 364 + + RI+YISC P TL ++L+ L + + ++ D FP T H+EC L Sbjct: 424 VLETLLEILPERIVYISCKPATLARDLKFLCSTGKYCLNKVQPVDFFPQTAHVECAAFLI 483 Query: 365 A 365 Sbjct: 484 K 484 >UniRef50_A9KP69 RNA methyltransferase, TrmA family n=18 Tax=Bacteria RepID=A9KP69_CLOPH Length = 463 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 80/401 (19%), Positives = 152/401 (37%), Gaps = 63/401 (15%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVP-------EVFRSPVSHYRMRAEFRIWHDGDD 58 T YE Q+ K +++ ++ YR + EF + D Sbjct: 83 YQTIPYETQIKIKADQVKKLIDEVIATDNKEYEFQGIEGSPLEFGYRNKMEFSFGDEFKD 142 Query: 59 --LYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHK 104 L + + + + E N+++ +++ + + LRH Sbjct: 143 GPLALGLHKKGSFYDIVTTSDCKLVHEDYNRILGCVLSLAKEYNLNYYHKMSHEGYLRHL 202 Query: 105 LFQIDYLTTLSNQAVVSLLYHKK---LDDEWRQEAEALRDALRAQNLNVHLIG------- 154 L + + + +VSL+ + L + + LR++L+ +L ++G Sbjct: 203 LIR---RAARTGEILVSLITTSQTNVLVNGEEEFLNKLRESLKNLSLEGSIVGILHTVND 259 Query: 155 ------RATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK 208 ++ +T I QD+I E + + ++ SF Q N+ + D Sbjct: 260 SLADVVQSDRTDILDGQDFIFEEV----LGLKFKISTFSFFQTNSLGAEVLYNCVRDFVG 315 Query: 209 GSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAA 267 +K L+ +LY G G + LA +V+ EI +V AA+ N + N + N + I Sbjct: 316 ETKDKLIFDLYSGTGTIAQLLAPVAKKVIGVEIVGEAVVAARENASLNKLTNCEFIAGDV 375 Query: 268 EEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCN 325 + + + + I +DPPR G+ + + R++YISC Sbjct: 376 LKVIDTIEE---------------KPDLIVLDPPRDGIHPKALDKIIDYGVDRLVYISCK 420 Query: 326 PETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTA 365 P +L ++L L + + VE++ D FP T H E LL Sbjct: 421 PSSLARDLVVLQERGYWVEKVRCVDMFPCTVHTETVCLLNR 461 >UniRef50_Q606W5 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Methylococcus capsulatus RepID=RUMA_METCA Length = 443 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 82/375 (21%), Positives = 142/375 (37%), Gaps = 36/375 (9%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH--DGDDL 59 L +AQ+A K L + P P+ YR RA + Sbjct: 90 LQYLSEDAQIALKEDLLLDQFRRIGKVEPAAQFPPLRGPHWGYRSRARLGARYVAKKGRE 149 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + + + + P + + + A + LR +L QI+ A+ Sbjct: 150 LVGFREHASAKIVDMTDCPVLHPALGERIQAFAELIEGL-SLRERLPQIEAAVGEERTAL 208 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDE-RLPVAGKE 178 V + L+D ++ L + Q L+V++ + + + + + E Sbjct: 209 V----FRVLEDPTAEDFARLARFGKDQGLDVYIQREGRDSVAPVYPETAHDLSYSLPEWE 264 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLA 237 + +R FTQ N A+N QM++ + +L+L+CG GNF+L LAR V Sbjct: 265 VTFRFGPLDFTQVNMAINRQMIDQVMQALDPQPEERVLDLFCGLGNFTLPLARRAGHVTG 324 Query: 238 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 E +VA A N A N I NV+ + + + Sbjct: 325 VEGGAEAVARAIRNAADNGIGNVEFHVADLSK------------PESCGSWAGREYHKVL 372 Query: 298 VDPPRSGLDSETEKMVQAYP-----RILYISCNPETLCKNLETLSQ--THKVERLALFDQ 350 +DP RSG +++Q P RI+Y+SCNP TL ++ L +++ + + D Sbjct: 373 LDPSRSGA----LEILQCVPNWKAGRIVYVSCNPSTLARDAGILVHEYGYRLLKAGVMDM 428 Query: 351 FPYTHHMECGVLLTA 365 FP+T H+E + Sbjct: 429 FPHTAHVESIAVFER 443 >UniRef50_A1APX5 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1APX5_PELPD Length = 446 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 100/375 (26%), Positives = 147/375 (39%), Gaps = 30/375 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPF----SDLVPEVFRSPV-SHYRMRAEFRIWHDGDDLY 60 Y QL EK + +LV +V SP+ YR R +F++ G +L Sbjct: 83 WQHIAYHRQLEEKRRIFADALWRGARAPGELVADVVASPLTYGYRSRVQFKLHGAGPNLR 142 Query: 61 HIIFDQQTKSRIRVDS-FPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + Q T P A +IN+++ ++ + P K+ QI+ AV Sbjct: 143 IGFYRQGTHFVEDAGQGCPIALPVINRILGSLREMLPAFPDP-TKIPQINLECAEKG-AV 200 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYID-----ERLPV 174 V + Y + L GR + + D + E Sbjct: 201 VIVNYIGDDHQGAKAFFRERAAQLEQATALYLQTGRKSTLQKVFGDDLLQYSQEGESSTA 260 Query: 175 AGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFD 233 + YR F Q NAA N +L + + D +L+LYCGNGNFSL LAR Sbjct: 261 PACSLTYR--PGGFAQVNAAQNSALLRLVREFADCRRDDQILDLYCGNGNFSLPLARGVA 318 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 V E S+AAA++N N I NV+ I A + G + Sbjct: 319 AVTGIEEYGDSIAAARHNARLNGITNVEFICADAAAGAGKLMG------------DGRRF 366 Query: 294 ETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQF 351 TI +DPPRSG E + + +I+YISC+P TL ++ L + + V D F Sbjct: 367 PTIILDPPRSGAADLLEHIPRLGADKIIYISCDPSTLARDCGVLFGKGYTVVSSVPVDMF 426 Query: 352 PYTHHMECGVLLTAK 366 P T H+E LL + Sbjct: 427 PQTFHLESVTLLRRR 441 >UniRef50_C1E3C6 Predicted protein n=2 Tax=Micromonas RepID=C1E3C6_9CHLO Length = 459 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 171/394 (43%), Positives = 228/394 (57%), Gaps = 40/394 (10%) Query: 8 TEQYEAQLAEKVVRLQSMM------------------APFSDLVPEVFRSPVSHYRMRAE 49 + Y +L K+ R +S EV S S++RMRAE Sbjct: 69 PDTYREELDVKIERARSHFAAAPAPAPTPEVPHPKPLEEIHLPPTEVHESARSNFRMRAE 128 Query: 50 FRIWHDGDDLYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQI 108 FR+WHDGD Y +FD K+ I V SFP SE IN+LM A I + + V+R KLFQ+ Sbjct: 129 FRVWHDGDRSYLAMFDSDDPKTPIEVPSFPMGSEKINELMPAFIEEIGRSEVIRRKLFQV 188 Query: 109 DYLTTLSNQAVVSLLYHKKL-DDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDY 167 ++LTT+ A++S+LYHK + DEW EAE +R L V +IGR+ K K+ L DY Sbjct: 189 NFLTTMKGDALISMLYHKPVKTDEWELEAEKMRQRL-----GVSIIGRSRKQKVVLGNDY 243 Query: 168 IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT--------------KGSKGD 213 + E + V G+ + Y+Q+E FTQPNA ++ +MLEWA D Sbjct: 244 VMEEIEVDGRVLTYKQLEGGFTQPNAGISAKMLEWARSAAVSDSADAVGEAAAPARRNDD 303 Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 LLELYCGNGNF++A+A F VLATE++K SVAAA+ N AN NV R+++EE T A Sbjct: 304 LLELYCGNGNFTIAMAPMFRAVLATEVSKVSVAAAKLNADANGAGNVAFARLSSEELTLA 363 Query: 274 MNGVREFNRLQG-IDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKN 332 ++ ++F RL L+SY T+ VDPPR+G+ E V + RI+YISCNPETL + Sbjct: 364 LDQGKQFARLDDVPPLESYDLRTVLVDPPRAGMGEEVSTFVSRFDRIVYISCNPETLAAD 423 Query: 333 LETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 + TL TH+V R A FDQFPYT H+ECG LL AK Sbjct: 424 VRTLRDTHEVARFAAFDQFPYTPHLECGALLIAK 457 >UniRef50_A5GTB6 Hypothetical RNA methyltransferase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GTB6_SYNR3 Length = 455 Score = 297 bits (760), Expect = 6e-79, Method: Composition-based stats. Identities = 74/384 (19%), Positives = 144/384 (37%), Gaps = 46/384 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD----LVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 H +AQ K +LQ+ + + P V YR RA + + L Sbjct: 88 HWQD---QAQSEWKQQQLQNTLRRVGRLECLVEPIRSTQAVLGYRNRAIIPVQERDNSLK 144 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQID 109 F + + + ++ P ++ L+ + A ++ +LR + + Sbjct: 145 AGFFQRGSHQVVNMNHCPVLDPRLDALIEPLKADLQAAGWPIYNEDTQKGLLRQLVLRAG 204 Query: 110 YLTTLSNQAVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ 165 + VV ++L ++W Q L + K ++ + Sbjct: 205 VSSGEVLLGVVVRDDQFQGAQELAEQWMQRWPELVGVVLNVQPKPGNTLLGPKERLLAGR 264 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNF 224 ++ E ++ +F Q + +++ + G++L + YCG G Sbjct: 265 PWLMESFA----GRRFQIGLGTFFQVHHQQAEALVDALRSELQLQSGEVLVDAYCGVGTL 320 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 L L + R++ E ++ S+ AQ N N +++ + E Q Sbjct: 321 GLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSVERRLQEF---------- 370 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLS--QTH 340 + + +DPPR GLD+ + ++ P R+ Y+SCNP TL ++L L Q Sbjct: 371 -----LPFTDVLLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLARDLALLCADQRF 425 Query: 341 KVERLALFDQFPYTHHMECGVLLT 364 ++ ++ FD FP T H+E +LT Sbjct: 426 ELTKVVPFDFFPQTTHIEAMAILT 449 >UniRef50_Q6MAY1 Uncharacterized RNA methyltransferase pc1544 n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Y1544_PARUW Length = 442 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 159/401 (39%), Gaps = 56/401 (13%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPE---VFRSPVSHYRMRAEFRIWHDGDDLYHI 62 YE QL +K +Q++ P+ + + + S HYR + E D ++ Sbjct: 54 WQQLPYELQLKQKEKSIQNLFKPYLNENVKWHSIIPSSPWHYRNKMELTFSSDKAGRRYL 113 Query: 63 I--FDQQTKSRIRVDSFPAASELINQLMTAMIAG-----------VRNNPVLRHKLFQID 109 ++ A+ Q A+ +++ LR + Sbjct: 114 GLIMQGTRGHVFQMKECLLANGWFAQAARAIQKWWDNSDVQAYHAIKDRGSLRTLTLREG 173 Query: 110 YLTTLSNQAVVSLLYHKKLD-----DEWRQEAEALRDALRAQN--------LNVHLIGRA 156 T +V L D + + + LRD++ N L + I + Sbjct: 174 LRT---GDRLVMLTVSGNPDYALTKSQLQSFVQVLRDSIELSNSDQKLSVFLRIQQIAKG 230 Query: 157 TKTK----IELDQDYIDERLPVAG-----KEMIYRQVENSFTQPNAAMNIQMLEWALDVT 207 T + D+I E+L + + + +R ++F QPN ++ AL + Sbjct: 231 RPTNFYEMLLYGPDHIREKLYLPDFNEAIQTLNFRISPSAFFQPNTEQAEKLYSQALKLA 290 Query: 208 KGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMA 266 S ++ +LYCG G + A+ V+ E+++ SV A+ N+ N + NV I Sbjct: 291 DLSASHVVYDLYCGTGTLGICSAKYVKEVIGIELSRESVLDARENVKENGLSNVTIKSGD 350 Query: 267 AEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISC 324 + +A++ + + + VDPPR GLD++ K + P+++YISC Sbjct: 351 VGQVLEALSQENSL-----------KPDVVMVDPPRIGLDAKAIKHILDLKAPKLVYISC 399 Query: 325 NPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLT 364 NP+T NL L ++++ + DQFP T H+E LLT Sbjct: 400 NPKTQVMNLGPLIDGGYQLQIVQPVDQFPQTVHVENITLLT 440 >UniRef50_Q0AUT8 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUT8_SYNWW Length = 419 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 72/368 (19%), Positives = 138/368 (37%), Gaps = 35/368 (9%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD----LVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 +YE +L K ++ + + + P + HYR + + + G Sbjct: 76 YQHAKYEEELVLKRQVVKDAIQRIAKIATVVEPVLSMPEPWHYRNKVTWHMAATGKQEPV 135 Query: 62 -IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 F + ++ + + SE +N L + A + + + + ++ Sbjct: 136 LGFFREASRQLLPISHCRLISEKMNCLTARVKALLPLIQPATGSEITLRESSLDHSTMLI 195 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI 180 E E A+ D++ ++ +RL ++ Sbjct: 196 WKGLQGWPAPEIWAELSAISDSV--------VVIEKNTCHYISG----PQRLLDKLGQVK 243 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEI 240 + +F Q N +M+ L + S +L+ +CG G+ +L LAR +RV+ E Sbjct: 244 FALSPGAFFQVNHCQAEEMIRLILSLVDFSGKTVLDAFCGVGSIALNLARQAERVIGVES 303 Query: 241 AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP 300 +P++ A+ N I NV+ I E ++ + I +DP Sbjct: 304 YEPAIHDARSNAIEAGIYNVEFIHGFCERVVARIDE---------------PIDVIVLDP 348 Query: 301 PRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHM 357 PRSG E + + I+Y+SCNP TL ++L Q ++ + D FP T+H+ Sbjct: 349 PRSGCKKELIQACSRISPREIVYVSCNPATLARDLALFGQLGYRPLLIQPIDMFPRTYHV 408 Query: 358 ECGVLLTA 365 E VL++ Sbjct: 409 ETVVLMSR 416 >UniRef50_C1E1X6 Predicted protein (Fragment) n=1 Tax=Micromonas sp. RCC299 RepID=C1E1X6_9CHLO Length = 473 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 75/406 (18%), Positives = 135/406 (33%), Gaps = 63/406 (15%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPE---------VFRSPVSHYRMRAEFRIWH-- 54 Y QL K ++ +M + + V YR + EF Sbjct: 84 WQDIAYAHQLTMKRDQVVDVMTRVAKVDQTRVQNIVGDCVPSDKTERYRNKMEFAFGPGA 143 Query: 55 DGDDLYHIIFDQQTK-SRIRV---DSFPAASELINQLMTAMIAGV--------------- 95 +G + + + + D + ++++ A + Sbjct: 144 NGRGVVIGLRPSGNHSDLVEIGNPDGCLLQHPVADEVLRGCRAHLDSNGNSSLLDAFNRR 203 Query: 96 RNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR 155 VLR ++ A V + + DDE L +A+ G Sbjct: 204 TGEGVLRSLTVRVAVDENGETIAAVDIAAATRGDDE-DAALRGLAEAIAKVRGVASSGGG 262 Query: 156 ATKTKIELDQDY----IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD---VTK 208 + +D LP+ + + + SF Q N +++ D + Sbjct: 263 DADGEGWSGEDVEVLSGAATLPMKLRGVTFALSAPSFFQTNTDQAEKLVAAVEDACGFSG 322 Query: 209 GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAE 268 +L+L+CG G L +A+ V E+ +V A+ N AN I N R Sbjct: 323 DGTEVVLDLFCGVGTLGLCVAKKAKHVFGWEVVPEAVKDAERNAEANGITNATFRRGDLA 382 Query: 269 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNP 326 + ++ G + + DP R+G+D K++++ RI+Y+SCNP Sbjct: 383 KLKASLPG----------------PDIVIADPARAGMDESLVKVLRSIGAERIVYVSCNP 426 Query: 327 ETLCKNLETLSQT-------HKVERLALFDQFPYTHHMECGVLLTA 365 T ++L L + V D FP+T H+E V+L Sbjct: 427 ATQARDLLRLKGGDGGEGARYDVRYCTPVDMFPHTPHVETVVVLDR 472 >UniRef50_C2M9N7 23S rRNA-methyltransferase RumA n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9N7_9PORP Length = 493 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 75/410 (18%), Positives = 141/410 (34%), Gaps = 69/410 (16%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDL-----VPEVFRSPVSHYRMRAEFRIWH------ 54 Y+ QL K + M + P V HYR + EF Sbjct: 87 WQQLPYDEQLRGKSQQAADAMTRIGHIAIEHTEPIVGCEDPWHYRNKVEFTFSKKRWLTE 146 Query: 55 -----------DGDDLYHIIFDQQT-KSRIRVD--SFPAASELINQLMTAMIAGV----- 95 + + + + + A + +++ + Sbjct: 147 EELKSLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQIADPIASEIRDYLNDYCLARWE 206 Query: 96 --------RNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRA-- 145 + V+R L + TT +V + + + ++ Q EALR+ Sbjct: 207 EYPYYDQRAHEGVMRTLLIR----TTTLGGLMVLIAFAEGTEELRVQLLEALRERFPQIT 262 Query: 146 -----QNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQML 200 N + ++ YI+E + + YR SF Q N+ ++ Sbjct: 263 SLYYMVNTKFNDSLADLPAQLYSGAPYIEENM----HGLRYRIGPKSFYQTNSRQAERLY 318 Query: 201 EWALDVTKGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDN 259 E + + +++ +LY G G + LA++ V+ E +V A N N I N Sbjct: 319 EKVREYAQLKGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYVPEAVEDAFVNRDQNGITN 378 Query: 260 VQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYP 317 + + + + DPPR+G+D+ +++ A Sbjct: 379 ATFYAGDMKAIL-----------TDDFVAAHGRPDVLVTDPPRAGMDAPVVEVILRAAPQ 427 Query: 318 RILYISCNPETLCKNLETL-SQT-HKVERLALFDQFPYTHHMECGVLLTA 365 RI+Y+SCNP T ++L L ++ ++ + D FP+THH+E LL+ Sbjct: 428 RIVYVSCNPATQARDLALLMAEGQYRAVKACAVDMFPHTHHVETVALLSK 477 >UniRef50_D1Y8C0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8C0_9BACT Length = 541 Score = 296 bits (759), Expect = 8e-79, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 147/390 (37%), Gaps = 49/390 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 L +Y Q K + + P V YR +A F + G Sbjct: 77 QLQHAEYTLQCQIKAMLAADALRRIGGFEIDGEIPCVPSRNEWRYRNKASFPVRARGRAG 136 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-------NNPVLRHKLFQIDYLT 112 F + + + VD P + N+L + + + L + + Sbjct: 137 DVGFFKRGSHEIVPVDRCPVICDRANKLYAVVKNMINYGRFCCYDEKSNSGWLRHVVIRS 196 Query: 113 TLSNQAVVSLLYH------------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK 160 + ++ +L ++L D ++ LR + N + + ++ Sbjct: 197 ARDGEELLLILVAAARPEGGALESLERLYDHLKERFPELRGLVVNVNPDEGNVIIGAESV 256 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCG 220 + +D + ERL SF Q N Q+ +A + +G LLELYCG Sbjct: 257 LVKGEDRLTERL----GNFRLDYDGTSFFQANPGQAEQLFAYAASLAEGQN--LLELYCG 310 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G + L+R + A E+ +VA A+ N +N I+ + +++ AAE Sbjct: 311 VGALTAFLSRKAKTIRAVEVWASAVALARENGESNRIEGLTVLQGAAENVVA-------- 362 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETL-S 337 + + VDPPR+G D + + A PR+LYISCNP TL ++ L Sbjct: 363 ------PADLEGIDCVVVDPPRAGCDKSLIETIAASRVPRVLYISCNPATLARDAALLRD 416 Query: 338 QTHKV--ERLALFDQFPYTHHMECGVLLTA 365 + + + L +FD FP T H+E LL+ Sbjct: 417 AGYVLDMDSLKVFDMFPQTCHVETVCLLSK 446 >UniRef50_C1TM76 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TM76_9BACT Length = 454 Score = 296 bits (758), Expect = 9e-79, Method: Composition-based stats. Identities = 83/390 (21%), Positives = 140/390 (35%), Gaps = 48/390 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV----FRSPVSHYRMRAEFRIWHDGDDLY 60 L Y+ QL K ++ M + + YR +A F + + Sbjct: 80 QLQHGSYDLQLEIKAKSVRDAMERIGRMRVDRLVCHPSPMQWGYRNKASFPVRSENGGE- 138 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV---------------RNNPVLRHKL 105 F + +D P + +L V R+ +LRH + Sbjct: 139 IGFFRSGSHKLAPIDGCPVLMPHVEKLYVDFRDTVMPELKRNGVPFYDERRHKGLLRHMV 198 Query: 106 FQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI---- 161 F+ + +L AVV+ L + + + L++ + V + +I Sbjct: 199 FRGNREGSLLALAVVTSLRDCRGKELLERSLARLKETTQTSFSGVWNENSSRGNRILGER 258 Query: 162 ---ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELY 218 I E++ +F Q N ++ A + G ++ELY Sbjct: 259 SSTIWGDGVITEKIS----NYDLSYDGTAFFQVNPFQAERLFLRASSIVAERGGAVVELY 314 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 G G ++ LA+ VLA E P++ N++ N +DNV+ I AE+ + M Sbjct: 315 AGVGALTVILAKAAKTVLAVEEWAPAIERLLENVSRNGLDNVKGICNRAEDTVRTMVEA- 373 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL 336 + + I VDPPR G SE V + ++Y+SCNP TL ++ L Sbjct: 374 -------------KPDVIVVDPPRGGCASEVLDAVTESSADMLVYVSCNPSTLARDGAKL 420 Query: 337 -SQTHKVERLALFDQFPYTHHMECGVLLTA 365 S ++ L FD FP T H+E Sbjct: 421 VSDGWELATLECFDLFPQTVHVETLASFKR 450 >UniRef50_UPI000196C3B9 hypothetical protein CATMIT_02351 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C3B9 Length = 479 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 70/381 (18%), Positives = 142/381 (37%), Gaps = 38/381 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPF-SDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHII 63 + Y L K + + ++ P +YR + + + + Sbjct: 13 QFINQGYVKSLEYKNEECKKIFKDLKVNVHPVSGMEDPYYYRNKTIIAFDKTYN---YGL 69 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAM-----------IAGVRNNPVLRHKLFQIDYLT 112 +++ + I S + + +++ + R +RH L + T Sbjct: 70 YEENSHRIIPYKSCLIHDQETDAIISKIAILFRKYRVSIYDPQRRRGEIRHILIRRAVKT 129 Query: 113 TLSNQAVV----SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYI 168 + +V K ++ + +++ + N I + K+ + +I Sbjct: 130 NQTLVVIVSNEAIFKGSKNFCNQLVKAFPSIKSIVLNTNKRQTSIVLGEQEKVLFGKGFI 189 Query: 169 DERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLAL 228 + L M ++ SF Q N + AL + +++ YCG G L Sbjct: 190 VDEL----CGMTFKISPRSFYQINHDQCEALYSKALSLITVKDPKIMDTYCGIGTIGLIA 245 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 ++N +V+ E+ K +V A+ N N ++N++ I+ A EF Sbjct: 246 SKNAKQVIGVELNKDAVKDAKLNKTFNKVENIKFIQGDATEFMV------------EAAK 293 Query: 289 KSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKVERL 345 + + I +DPPRSG K I+Y+SC+P T ++L+ + + + + Sbjct: 294 QKVDVDVIIMDPPRSGSTETFIKAAVSLKPKEIVYVSCDPHTQVRDLKLFRKLGYDFKDV 353 Query: 346 ALFDQFPYTHHMECGVLLTAK 366 +D FP+T H+E VLL+ K Sbjct: 354 YPYDMFPFTSHVETVVLLSHK 374 >UniRef50_C8WAE3 RNA methyltransferase, TrmA family n=3 Tax=Atopobium RepID=C8WAE3_ATOPD Length = 441 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 81/382 (21%), Positives = 140/382 (36%), Gaps = 42/382 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVP---------EVFRSPVSHYRMRAEFRIWHD 55 YE QL EK + S + P V YR + E + Sbjct: 80 PWGNIVYEQQLVEKRNSVVSALERIGHFSPDDVSELVKDIVSPGEPWGYRNKIELAFKRN 139 Query: 56 GDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-NPVLRHKLFQIDYLTTL 114 G+ ++ + +R+ P + + + A+ + + + +I + Sbjct: 140 GNKTLVGMYAPNGQDIVRIKDCPLLDKSNQKAVGAVSGALSYLSGSHELDVERIGIRVSR 199 Query: 115 SNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPV 174 + + L+ Q A L DA++A ++ + +K + + ERL Sbjct: 200 RTKELEVALWTAPSGFPRAQVARVLSDAVKATSVVRVMTKGPSKARRVVG----VERLSG 255 Query: 175 AG------KEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLA 227 +G + SF Q N +++E L D ++LYCG G F+L Sbjct: 256 SGSWSELIDGQKMQLSAPSFFQVNTKGAEKLVELVLSGLDVQPDDEAMDLYCGAGTFTLP 315 Query: 228 LARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 287 LA+ V A E P+V + N+ +DNV + A Sbjct: 316 LAKRAGFVSAVEAYGPAVRDLRRNLELAKLDNVDAVGGDAGREFPDT------------- 362 Query: 288 LKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLETLSQ--THKVE 343 + I VDPPR+GL + + + P I Y+SC+P TL ++L+ + ++K Sbjct: 363 ----DADVIIVDPPRAGLAPDVIQQLSKQPARAIAYVSCDPATLARDLKRFVEIGSYKPV 418 Query: 344 RLALFDQFPYTHHMECGVLLTA 365 + D FP T H+E LL Sbjct: 419 SVTPVDLFPQTFHVENVCLLKR 440 >UniRef50_A1VZH5 tRNA (uracil-5-)-methyltransferase n=17 Tax=Campylobacteraceae RepID=TRMA_CAMJJ Length = 357 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 133/352 (37%), Positives = 204/352 (57%), Gaps = 8/352 (2%) Query: 15 LAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTKSRIRV 74 L EK ++ F ++F S HYR RAE +H+ D L++ +FD ++K + + Sbjct: 12 LDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTRAELSFYHENDTLFYAMFDPKSKKKYII 71 Query: 75 DSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQ 134 + A E I M ++ +R + L+ KLF +++LTT + V+LLYHK ++D + Sbjct: 72 EYLDFADEKICAFMPKLLEYLRQDDKLKEKLFGVEFLTT-KQELSVTLLYHKNIED-IKS 129 Query: 135 EAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAA 194 E L + NL+++LI R+ K+ + + + L + +++ Y + F QPN A Sbjct: 130 NLENL-----SNNLHINLIARSKGKKLIFKTENLRQTLNIQDRKIFYEFNNDCFIQPNTA 184 Query: 195 MNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIA 253 +N +M+ W ++ K DLLELYCG GNF+LALA F +VLATEI+K ++ A N Sbjct: 185 INEKMITWVCEILNTQKRMDLLELYCGYGNFTLALAPFFFKVLATEISKSNINFALKNCE 244 Query: 254 ANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV 313 N+ N+ R+++EE + A+ REF RL+ I L + + VDPPR+GLD ++ Sbjct: 245 LNNTTNIHFARLSSEELSLAIKKEREFFRLKDIRLDDFNFSHVLVDPPRAGLDKSVIDLI 304 Query: 314 QAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 + Y I+YISCNP TL +NL+ LS TH+VE ALFDQF T H+ECGV L+ Sbjct: 305 KKYENIIYISCNPITLKENLKELSLTHRVEEFALFDQFVNTPHLECGVFLSK 356 >UniRef50_A8SJ40 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SJ40_9FIRM Length = 450 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 77/389 (19%), Positives = 158/389 (40%), Gaps = 50/389 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV-SHYRMRAEFRIW--HDGDDLYHI 62 + YE +L K +++ + PE+F SP+ + YR + E+ + + Sbjct: 84 YQSVPYEYELKLKQRQIKELFEDVYSEEPEIFESPLKTAYRNKMEYTFADMYKDSPIMLG 143 Query: 63 IFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDY 110 + + I + A+I VR + +LRH + + Sbjct: 144 MHKKNRFYEVIDTKECNLVHIDFEIIRNAVIDFVREKNLPFVKKRTHEGLLRHLIIR--- 200 Query: 111 LTTLSNQAVVSLLYHKKLDDEWRQEAE---------ALRDALRAQNLNVHLIGRATKTKI 161 + + +V+++ + + + + + ++ + +N ++ K I Sbjct: 201 YALTTGEIMVNIVTTTQSEFDSKSFVDMLLGLKLEGNIKSIVHTENDSLADAVVPEKINI 260 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCG 220 ++YI E++ ++ ++ SF QPN I + A+++ + ++ +LY G Sbjct: 261 IFGKEYITEKI----FDLEFKVTPFSFFQPNVFGAINLYSKAIELCGDIENKVVFDLYSG 316 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 G +AR V EI + +V +A + N + N I Sbjct: 317 TGTIGQIVARKAKAVYGIEIVEEAVESANKSAKENGLTNCTFIAGDV------------- 363 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLET-LS 337 L+ I+ + + I VDPPR G++ + + + + I+YISCNP+T ++++ L Sbjct: 364 --LEEIENRKEMVDVIIVDPPRDGINQKALEKIISCGAKTIVYISCNPKTQKRDIQILLQ 421 Query: 338 QTHKVERLALFDQFPYTHHMECGVLLTAK 366 +K+ L +F+QFP T H E LL + Sbjct: 422 NGYKLITLKIFNQFPRTVHCEAVALLERR 450 >UniRef50_B0VI35 SAM-dependent methyltransferase related to tRNA (Uracil-5-)-methyltransferase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VI35_9BACT Length = 456 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 85/379 (22%), Positives = 146/379 (38%), Gaps = 34/379 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP---VSHYRMRAEFRIWHD--GDDLY 60 +Y QL +K L + +PF D F +P + HYR + + + + Sbjct: 83 WLMLKYSEQLKQKNQLLLELFSPFIDKDVIYFPAPSPQIKHYRNKVFMPVGKNYQTGKIT 142 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-------LRHKLFQIDYLTT 113 + +F + + + ++ + +QL +++ V + +L I + Sbjct: 143 YGMFARFSHQIVEHNTCENHPPIFDQLANSLMEFCLKAKVEPYNEIEHKGQLRHIGFRCN 202 Query: 114 LSN-QAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ---DYID 169 Q +V L+ + L + I R + I + Y Sbjct: 203 SDGRQILVILVTLSGKLPFTNLLVKKLTTEFPQIKGIIQNINRQKENVILGKETKLLYGS 262 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALA 229 E L + +R SF Q N ++ + D S +L+ YCG G L+LA Sbjct: 263 ENLYDNLCGLKFRINYRSFWQINTGTMEMIISFLQDFV-NSNNVILDAYCGIGAIGLSLA 321 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 RV+ E ++ A+ N N + NV + E+ A+ L Sbjct: 322 DKVKRVILLEEFPQAIEDAKENAVLNGLKNVSFVIGKVEDNLSAV-------------LI 368 Query: 290 SYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQT--HKVERL 345 + +TI +DPPRSG+ + + +I+Y+SC P TL ++L TL +KV L Sbjct: 369 KEKPDTIIMDPPRSGVQQNALEAIIQAEVKQIIYLSCAPMTLARDLNTLIAGEKYKVVFL 428 Query: 346 ALFDQFPYTHHMECGVLLT 364 FD FP T H+EC +L Sbjct: 429 QPFDMFPNTWHIECLAVLK 447 >UniRef50_C5CE25 RNA methyltransferase, TrmA family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE25_KOSOT Length = 440 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 82/378 (21%), Positives = 147/378 (38%), Gaps = 40/378 (10%) Query: 9 EQYEAQLAEKVVRLQSMMAPFSD----LVPEVFRSPVS-HYRMRAEFRIWHDGDDLYHII 63 QY QL K +Q E+ S + HYR R E+ + G + + Sbjct: 81 LQYSNQLLWKKRIVQEQFRRVGKFYELPDFEMIPSKKTNHYRNRMEYVAYQKGKKIGFGM 140 Query: 64 FDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNP-------VLRHKLFQIDYLTTLSN 116 + + + + V+ E ++ + R L + + Sbjct: 141 YKRFSNEVVDVEDCDLGYEGFGKVRRTFEEILSRFGVKPYNRESKRGFLKHLVLRGNRNG 200 Query: 117 QAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKT------KIELDQDYIDE 170 V L+ ++ E + + +++ L VH+ ++ + I E Sbjct: 201 DIVALLITKRESFPEIDKISREVKEQLPEVTSLVHVFNSRDDVVLRGPYRVIYGEGIITE 260 Query: 171 RLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALA 229 L + +++ SF Q N + ++L++ S + L+LY G G F+ A Sbjct: 261 TL----GDAVFQVPPVSFFQANVFVMEELLKYVQQELNPSPSETFLDLYSGIGTFAFYFA 316 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 R F +V+A E K S A N N I N++ + M +F + Sbjct: 317 RMFKKVVAVEGIKISSRAMLSNARINMISNLEAVNMDTRDFL---------------EKN 361 Query: 290 SYQCETIFVDPPRSGLDSETEKMVQA-YPRILYISCNPETLCKNLETLS-QTHKVERLAL 347 + + + +DPPR+G+ + E + +A RI+YISCNP TL ++ LS + ++ L Sbjct: 362 EEKFDKVILDPPRAGIGKDIELIGKALPKRIVYISCNPTTLARDSRYLSNKGFSLKALRA 421 Query: 348 FDQFPYTHHMECGVLLTA 365 FD FP THH+E + Sbjct: 422 FDMFPDTHHVEVVAIFNR 439 >UniRef50_Q03Z05 tRNA (Uracil-5-)-methyltransferase related enzyme n=4 Tax=Leuconostocaceae RepID=Q03Z05_LEUMM Length = 463 Score = 294 bits (752), Expect = 5e-78, Method: Composition-based stats. Identities = 72/384 (18%), Positives = 145/384 (37%), Gaps = 39/384 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS---DLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 L +YEAQL K +++ + + + ++YR + + D L Sbjct: 95 PLVNLKYEAQLELKQAQVKRLFEEQHIDVSVDRTIGMDNPTYYRNKTIVPVKWQNDHLTS 154 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----------PVLRHKLFQIDY 110 + + T + +D + I+Q + + + +R+ + + Y Sbjct: 155 GFYKRGTHDLVPMDDYFVNDAEIDQAIIVVRNILEKYDITAFDPDLERGAIRYIMIRRGY 214 Query: 111 LTTLSNQAVV----SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD 166 + +V + + ++ + R + L+ + + + + +I + Sbjct: 215 YSHELMVVLVSNEEVISHETEIIADIRNQLTELKSLILNYSPKKDYVLLSPNNRILWGEK 274 Query: 167 YIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFS 225 I + L + NSF Q N + + A D +++ Y G G Sbjct: 275 AIYDTL----LGYEFIIGPNSFYQVNPQTTEVLYDLAAQKADLKPTDTVIDAYSGIGTIG 330 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 +++A +VL E+ +VA AQ N+ N+I N + I A + Sbjct: 331 ISVASRVKKVLGVEVVPGAVADAQLNLQVNNISNAEYILADAPVQFKKWQE--------- 381 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNL-ETLSQTHKV 342 + + + +FVDPPR GL + + +I+YISCNP TL ++ E + + + Sbjct: 382 ---QGLKPDVVFVDPPRRGLTTSLINGTTDMSPEKIVYISCNPVTLSRDAVEIIENGYHI 438 Query: 343 E-RLALFDQFPYTHHMECGVLLTA 365 + + DQFP T H+E + Sbjct: 439 DGSVLPVDQFPQTSHVESITVFRK 462 >UniRef50_Q7U326 tRNA (uracil-5-)-methyltransferase n=2 Tax=Helicobacter RepID=TRMA_HELHP Length = 404 Score = 293 bits (750), Expect = 8e-78, Method: Composition-based stats. Identities = 130/384 (33%), Positives = 195/384 (50%), Gaps = 27/384 (7%) Query: 9 EQYEAQLAEKVVRLQSMMAPF------------SDLVPEVFRSPVSHYRMRAEFRIWH-- 54 + Y QL K F + L EVF SP +R RAEFR H Sbjct: 16 QDYSTQLQAKHNLTLQEFQSFLDTKSKNFQYPTNPLAIEVFASPQEGFRARAEFRFSHVF 75 Query: 55 -DGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTT 113 + L + R+ + P + +M ++ + +L HKL+ + L++ Sbjct: 76 QNKSGLDFAMNAFGYNHRVPIKKCPILLPTLQDIMPLLLHYLNTYDLLNHKLYACNLLSS 135 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALRDALR-AQNLNVHLIGRATKTKIELDQDYIDERL 172 L N+ +++L+YHK LD W A ++ L N N+H+IGR+ K L D I E L Sbjct: 136 LQNEIIITLIYHKSLDSHWESLALKIQKELEYTLNTNIHIIGRSKNHKHILSNDIICEHL 195 Query: 173 PVA-----GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-----DLLELYCGNG 222 + + + + E+ F QPN +N QMLE+ + D+LELYCG+G Sbjct: 196 TLFANTPKERTYTFFKQESRFCQPNPFINTQMLEFIVSALSSIYTPQTPCDMLELYCGSG 255 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 NF++ LA F + ATE+ K ++ Q N+A N+I+N+ R+ A E QA+ R F R Sbjct: 256 NFTIPLASIFRHIFATEVVKSAITLLQKNMAKNNIENIIPARLNAFESIQALRKERVFFR 315 Query: 283 LQGIDLKSYQCETIFVDPPRSGLD-SETEKMVQAYPRILYISCNPETLCKNLETLSQTHK 341 L+ IDL ++ + + +DPPRSG+ E +Q + I+Y+SCNP TL +L LSQ+H Sbjct: 316 LKNIDLDAFAFDCVLIDPPRSGVGEEEVLYFLQNFNTIIYVSCNPHTLLNDLRILSQSHY 375 Query: 342 VERLALFDQFPYTHHMECGVLLTA 365 V R LFDQFP+T+H EC V+L Sbjct: 376 VMRFGLFDQFPHTYHRECIVILRK 399 >UniRef50_B9YDZ7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YDZ7_9FIRM Length = 484 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 81/378 (21%), Positives = 154/378 (40%), Gaps = 35/378 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 L + EAQL K +Q + ++ + P + YR + + I + L Sbjct: 83 PLMILKPEAQLQVKRELVQEALIKYAGLSRDKVQPVIASPSGLGYRNQCKLPIREERGRL 142 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAG-----VRNNPVLRHKLFQIDYLTTL 114 + +F++ + + + + L ++A ++ + + L Sbjct: 143 VNGLFEEGSNRVMPIAHCLIHDPDLEALRKQILALANQFRLKAYDPKKGTGLRTLVLRGF 202 Query: 115 SNQAVVSLLYHKK-LDDEWRQEAEALRD---ALRAQNLNVHL-IGRATKTKIELDQDYID 169 Q L+ + L + ++ +A+ ++ N + + + + +D Sbjct: 203 EGQYQCVLVSGEDSLPKGFIEKLKAIEGMTCIMQNINPDKRTRQLFSNRWSLLAGED--- 259 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALA 229 RLPV ++ SF Q N +QM+ A + + L+E Y G G SL L Sbjct: 260 -RLPVQFGDVRLSLSCASFFQLNRPQALQMMRMAASLIEP-CDTLVEAYSGVGGISLMLK 317 Query: 230 RNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 289 ++ E +V A+ N N +NV+ + A + + + ++ Sbjct: 318 EKAKTIIGIEFVPEAVENAKENARLNRAENVRFVCGDAAKEMKKI-------------IR 364 Query: 290 SYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQTHKVERLAL 347 + + + VDPPR+GLD + ++ +I+YISCNP TL KNL+ L ++V+ + Sbjct: 365 RTKIDAVVVDPPRTGLDGAMIESLRQCQPKQIVYISCNPATLGKNLKELRDLYEVKTVIP 424 Query: 348 FDQFPYTHHMECGVLLTA 365 FD FP T H+E VLL+ Sbjct: 425 FDMFPNTPHVETVVLLSK 442 >UniRef50_Q88SY9 Uncharacterized RNA methyltransferase lp_3226 n=36 Tax=Lactobacillales RepID=Y3226_LACPL Length = 481 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 71/389 (18%), Positives = 147/389 (37%), Gaps = 47/389 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPF-------SDLVPEVFRSPVSHYRMRAEFRIWHDGDD 58 L Y AQLA K ++ + + D+ P + + YR +A+F++ Sbjct: 111 LEHLDYPAQLAFKQDLIRQALEKYRPAGYRHYDVRPTIGMTNPYEYRNKAQFQVRLIDGH 170 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQ 107 + ++ + + + + + +M ++A + N+ +++ + + Sbjct: 171 VAAGLYKENSHDLVDLPTCSVQMPATMTVMRQVVAWLEELQVPIYDEEHNSGIVKTIVVR 230 Query: 108 IDYLTTLSNQAVVSLLYHKK-------LDDEWRQEAEALRDALRAQNLNVHLIGRATKTK 160 T + + + + L + ++ + ++ N + +T Sbjct: 231 EAAAT---GEIQLVFITNTPKLPKKHQLLMKIAEKLPMVVSVMQNINAGKTSLIWGDQTT 287 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYC 219 + + I E L +++ +F Q N ++ A + + + L++ Y Sbjct: 288 LLAGKPTITEEL----DGLVFDLSARAFFQLNPQQTKKLYRLAREALNLAPNETLVDAYS 343 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G L+LA V + +VA A N N I N AE Sbjct: 344 GVGTIGLSLADVAKEVRGMDTIPAAVADANANAQRNQITNAHYEVGEAEVLLPQWLA--- 400 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLS 337 + + + VDPPR+GLD+ + A +++YISCNP TL ++L+ L+ Sbjct: 401 ---------SGFAPDAMVVDPPRTGLDNVLIDAILQSAPEKLVYISCNPSTLAQDLQALT 451 Query: 338 QTHKVERLALFDQFPYTHHMECGVLLTAK 366 + ++V+ + D FP T E V T + Sbjct: 452 RGYQVDYIQSIDMFPQTARCEAVVRFTKR 480 >UniRef50_Q5WW81 23S rRNA (uracil-5-)-methyltransferase rumA n=6 Tax=Legionella RepID=RUMA_LEGPL Length = 444 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 76/373 (20%), Positives = 147/373 (39%), Gaps = 30/373 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP----VSHYRMRAEFRIWH-DGDDLY 60 L E Q+ K L +++ + P+ SP +YR +A + Sbjct: 88 LQHMSAEEQIRFKQSHLLDLLSRYGHTAPQTVLSPLTSHPWNYRNKARLSTRFVEKKQST 147 Query: 61 HIIFDQQTKS--RIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + F ++ ++ P + I+ + + + + + + QI+ N+ Sbjct: 148 MVGFRERNNPRFITEINQCPILNSKIDTDIVHLRKLI-DTMEDKQCIAQIEVAAG-DNEV 205 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL--DQDYIDERLPVAG 176 + L ++ + + V L + + + Sbjct: 206 ALIFRNLTPLTEQDESKIRKFAQQFQ---YKVFLQPGGLDSVFCFYPSDAHAYLSYELPD 262 Query: 177 KEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRV 235 ++ ++ N FTQ NA +N +M++ A+ + + D +L+L+CG GNFSL +A++ RV Sbjct: 263 YQITFQFHPNDFTQVNAELNRKMVKQAIQLMELKNSDIVLDLFCGLGNFSLPMAKHCSRV 322 Query: 236 LATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCET 295 + E + V A N +NHI NV ++ + N V Sbjct: 323 IGVEGNRNMVERAYMNAKSNHITNVDFYAANLDDVMEVRNLVNT------------SFSK 370 Query: 296 IFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL--SQTHKVERLALFDQFP 352 + +DPPRSG +++ RI+Y+SCNP TL ++ + L + + + + D FP Sbjct: 371 VLIDPPRSGALEIVKQIDSIDPERIVYVSCNPITLARDTDILVNQKGYVLITAGVMDMFP 430 Query: 353 YTHHMECGVLLTA 365 +T H+E L Sbjct: 431 HTAHVESIALFQK 443 >UniRef50_C0FU98 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FU98_9FIRM Length = 498 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 82/433 (18%), Positives = 158/433 (36%), Gaps = 96/433 (22%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVP-------EVFRSPVSHYRMRAEFRIWHDGDD 58 T Y+ QL K +++ +M D + YR + EF + D Sbjct: 84 YQTLPYDRQLEMKAEQVKKLMDDVIDQENRDYQFLGIKESPRQTGYRNKMEFSFGDEFKD 143 Query: 59 --LYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAG-----------VRNNPVLRHK 104 L + + + + V++ E ++++ +A +R+ LRH Sbjct: 144 GPLALGMHKRGSFYDIVTVENCQIVDEDFRKILSVTLAYFREKNITYYHKLRHTGYLRHL 203 Query: 105 LFQIDYLTTLSNQAVVSLLYHKK--------------------------------LDDEW 132 L + T + +V L+ + L + W Sbjct: 204 LVRKAVKT---GEILVDLVTTTQTDFPGIAAAQMDEVESTLNNAQENAFAGTEEELLEGW 260 Query: 133 RQEAEA------LRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVEN 186 + A + L +N NV T + QD+ E L + ++ Sbjct: 261 KAALLAADYKGIMTGILHTRNDNVADTVTNEGTDVLYGQDFFYEEL----LGLRFKITPF 316 Query: 187 SFTQPNAAMNIQMLEWALDVTKG------------SKGDLLELYCGNGNFSLALARNFDR 234 SF Q N+ + + A + + +LY G G + L+ + Sbjct: 317 SFFQTNSLGAEVLYQTAREFIGDALPSGTDADIAEHGKIVFDLYSGTGTIAQMLSPVAKK 376 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 V+ EI + +V AA+ N N + N + I + ++ + + Sbjct: 377 VIGVEIIEEAVEAAKENAQLNGLHNCEFIAGDVLKVIDSIEE---------------KPD 421 Query: 295 TIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETL-SQTHKVERLALFDQF 351 I +DPPR G++ + + + Y P+++YISC P +L ++LE L ++ ++V+++ D F Sbjct: 422 YIVLDPPRDGINPKALEKIIRYNVPQMVYISCKPTSLARDLEVLQARGYEVKKVCCVDMF 481 Query: 352 PYTHHMECGVLLT 364 P T H+E VL+ Sbjct: 482 PSTFHVESVVLMQ 494 >UniRef50_UPI000185D2C9 23S rRNA (uracil-5-)-methyltransferase RumA n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D2C9 Length = 470 Score = 291 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 74/401 (18%), Positives = 138/401 (34%), Gaps = 59/401 (14%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGD--- 57 YE+QL K +++ + + P V + YR + EF Sbjct: 86 WQDMNYESQLFYKQKEVENNLVRLGKITIPELMPIVASENIYFYRNKMEFSFSDMRWLTP 145 Query: 58 -----------DLYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGV---------- 95 + +D + N + + Sbjct: 146 EEIQNADTIEQRNGLGFHIAGAWDKILDIDKCYLQEDPSNAIRLEIKRFALENNIAFYSP 205 Query: 96 -RNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKK------LDDEWRQEAEALRDALRAQNL 148 + VLR + +I + + + ++ + + L + Q + N Sbjct: 206 RQQTGVLRSMMIRI----SSTGEIMLVIQFFSDSKKCNLLLEHIAQTFPQITSLQYCINS 261 Query: 149 NVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK 208 + KI D I E + + ++ SF Q N+ ++ + D Sbjct: 262 KGNDAIYDQDLKIYKGTDCIYEEME----GLRFKINAKSFYQTNSKQAHKLYQITRDFAD 317 Query: 209 GSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAA 267 +L+ +LY G G + +AR +V+ E ++A A+ N AN I+NV Sbjct: 318 LKGDELVYDLYTGTGTIAQFVARKAKKVVGVEAVPEAIADAKANAKANGIENVSFYVGDM 377 Query: 268 EEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCN 325 + + + I DPPR G+ + + + A P+I+Y+SCN Sbjct: 378 KNVFN-----------DTFIKANGTPDVIITDPPRDGMHKDVVEQILQIAPPKIVYVSCN 426 Query: 326 PETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 T ++L L + +KV ++ D FP T+H+E VLL + Sbjct: 427 SATQARDLALLDEMYKVTKVQPVDMFPQTYHVENVVLLEKR 467 >UniRef50_B0ESQ3 RNA m5u methyltransferase, putative n=2 Tax=Entamoeba RepID=B0ESQ3_ENTDI Length = 479 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 75/390 (19%), Positives = 139/390 (35%), Gaps = 51/390 (13%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD---LVPEVFRSPVSHYRMRAEFRIWHD--GDDLY 60 + Y+ QL K ++ +M+ YR R ++ G L Sbjct: 106 YQSMGYQQQLEMKKKQVLNMINKEIKEYQFDGIKASPINIGYRNRMDYTFGDGYIGGPLE 165 Query: 61 HIIFD-QQTKSRIRVDSFPAASELINQLMTAMIAG-----------VRNNPVLRHKLFQI 108 + + + N+L+ +++ LR+ L + Sbjct: 166 CGLHKMYHFNDVVTTFDCRIVDKDFNKLLLFTRDYFRIKNIPHYNKIKHTGYLRNLLIR- 224 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQE---------AEALRDALRAQNLNVHLIGRATKT 159 +N+ + L+ +L + + L + ++ I K Sbjct: 225 --KAKKTNEIMYCLITSSQLTIDLNELKNKLLELPLMGNLVSIIHCIFDDITDIVGYNKM 282 Query: 160 KIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELY 218 +I DYI E L + ++ SF Q N+ + + + +K D++ +LY Sbjct: 283 EILYGNDYITEEL----LGLHFKITPMSFFQTNSLGAEVLYQTVREYITTTKCDIIFDLY 338 Query: 219 CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVR 278 CG G + L+ +++ E+ ++ AA+ N N + N + + R Sbjct: 339 CGTGTITQLLSPICKKIIGVELNPDAIHAAKLNAELNKLTNCEFRTADVNNELDQLQENR 398 Query: 279 EFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETL 336 E I +DPPR+G+ + Y I+Y+SC P TL ++L L Sbjct: 399 --------------PELIVLDPPRTGIHPTALSKIIKYGAQTIIYVSCMPTTLVRDLIIL 444 Query: 337 SQ-THKVERLALFDQFPYTHHMECGVLLTA 365 Q +KV+ + L D FP T H+E LL Sbjct: 445 EQNGYKVKNITLVDMFPNTPHIETVCLLKK 474 >UniRef50_B5Y6H3 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y6H3_COPPD Length = 438 Score = 290 bits (743), Expect = 6e-77, Method: Composition-based stats. Identities = 85/380 (22%), Positives = 142/380 (37%), Gaps = 40/380 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVP----EVFRSPVSHYRMRAEFRIWHDGDDLY 60 L Y+ QL K + + V + YR +A F + + L Sbjct: 77 QLQHISYQEQLQWKSNFASQNLWKLAREKVDNVHIVPSDLLYGYRAKAHFTFGEENNILN 136 Query: 61 HIIFDQQTKSRIRVDSFPAASELI----NQLMTAMIA-----GVRNNPVLRHKLFQIDYL 111 F ++ + + P E + +++ + +N LRH ++ L Sbjct: 137 IGYF-SKSDKWFALTTCPILKETLWVTAQDVLSVLRKHDLKSYFTSNGTLRHLQVRVSLL 195 Query: 112 TTLSNQAVVSLLYHKKLDDEWRQEA--EALRDALRAQNLNVHLIGRATKTKIELDQDYID 169 T Q +V+ K + +E + QN + + Y+ Sbjct: 196 TGEK-QVLVTFTQFPKNFENVAEEILSAGISSLALHQNTAQNKTVIGKGATLYNGNQYVQ 254 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLAL 228 E+L +Y SF Q N ++ ALD + D++ E Y G G F+L Sbjct: 255 EQLM----GKVYNITPVSFFQINPVQAEKLFSIALDYLEPQPEDIVFEGYSGVGAFTLLY 310 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 A+ V+A E + +V A N A N++DNVQ + EE ++ Sbjct: 311 AQKVKTVIAAEGVEEAVQQACKNAALNNVDNVQFLAKPVEEAAGSL-------------- 356 Query: 289 KSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQ-THKVERL 345 + + VDPPR+G+ E V RI+YISC+P TL +++ + + + Sbjct: 357 -QQKINKVVVDPPRNGMTQEALNAVARLQPERIVYISCDPSTLARDISRFQPFGYSLNHI 415 Query: 346 ALFDQFPYTHHMECGVLLTA 365 D FP T H+EC LL Sbjct: 416 QAIDMFPQTTHVECVALLIK 435 >UniRef50_B3PL62 23S rRNA (Uracil-5-)-methyltransferase RumA n=2 Tax=Pseudomonadaceae RepID=B3PL62_CELJU Length = 485 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 159/373 (42%), Gaps = 30/373 (8%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGDDLY 60 L + EAQL K + + + L P+ P+ YR RA +W++ D Sbjct: 125 QLQHLKPEAQLLMKQQVVLEQVHRWGGLTPKRVLPPLRSESLGYRSRARLGVWYEADSSV 184 Query: 61 HIIFDQQ-TKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + F QQ K+ ++S +N+L+ + ++ V + I+ + S A Sbjct: 185 TLGFRQQQRKTLTNIESCSVLLPALNRLIGPLRQWLQAR-VANKAVTHIELVAAQSGPA- 242 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 V + + K L RQ L ++ V L + +L+ +D L + + Sbjct: 243 VIVRHTKPLVALQRQALAELAQR---ESCQVWLEPNGNQGLTDLEGSPVDPHLVLDVAGL 299 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLAT 238 FTQ N A+N +M++ AL++ D +L+ +CG GNF+L +A RV+ Sbjct: 300 PLHFHPQDFTQVNPAVNGRMVQQALELLAPGTNDLVLDFFCGMGNFTLPMASRVARVIGL 359 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E+ +P V AQ N +DN++ ++ + + Q I + Sbjct: 360 EVVEPMVTRAQANATRLGLDNLEFLKADLSQM-----------DSPRLRQLCSQASAILL 408 Query: 299 DPPRSGLDSETEKMV-------QAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQ 350 DPPR G ++ + RI+Y+SCNP TL ++ L++ + ++ L + D Sbjct: 409 DPPRDGAKELVTQLRDLRRKGQLSAQRIVYVSCNPATLARDAALLAEAGYGLDALGVMDM 468 Query: 351 FPYTHHMECGVLL 363 FP+T H+E L Sbjct: 469 FPHTSHVESMALF 481 >UniRef50_D2MNL8 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNL8_9FIRM Length = 386 Score = 290 bits (742), Expect = 7e-77, Method: Composition-based stats. Identities = 71/376 (18%), Positives = 141/376 (37%), Gaps = 38/376 (10%) Query: 9 EQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQT 68 + Y Q+ K L+ + ++P + HYR + + ++ ++ Sbjct: 17 QPYANQIRWKQAVLERLFPK-ETVLPMLKDKNPDHYRHKIYATFGKNAQGIFLGLYGYHN 75 Query: 69 KSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDYLTTLSNQ 117 + + N+++ + R +LRH +I Sbjct: 76 HRLVNSMDCLIQHKKGNEILRTLCELANDFHLSVYQEDRRKGLLRHVYLRISSKDEKVMM 135 Query: 118 AVVS----LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLP 173 +V KKL ++ + + N I + ++ + Y+ +++ Sbjct: 136 VLVLGEKKFPGSKKLVKILLEKHPEIETVILNYNFRKTSIVLGEQERVVYGKGYLMDKI- 194 Query: 174 VAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNF 232 + +R +SF Q N ++ + A+++ K +++ G G SL LAR+ Sbjct: 195 ---DGLSFRISSHSFYQVNPKQAYRLYQRAIELANLKKEMKVVDACSGTGTISLLLARHV 251 Query: 233 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 V+ E+ +V A N N I NVQ ++ EE Q Sbjct: 252 QSVIGIELNPQAVFDANENKKVNQIQNVQFLQGRVEEVIPRYR---------------IQ 296 Query: 293 CETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQ 350 + +F+DPPRSG+ + P+I+YISC+P T ++++ L + + D Sbjct: 297 ADVLFLDPPRSGMGPCFMTYLDQLKIPKIVYISCDPNTQARDIQILKSHYSITVSQGVDM 356 Query: 351 FPYTHHMECGVLLTAK 366 FP T ++E ++L K Sbjct: 357 FPQTKNIENILVLERK 372 >UniRef50_Q74IG2 Uncharacterized RNA methyltransferase LJ_1606 n=27 Tax=Lactobacillus RepID=Y1606_LACJO Length = 459 Score = 290 bits (742), Expect = 7e-77, Method: Composition-based stats. Identities = 68/386 (17%), Positives = 132/386 (34%), Gaps = 41/386 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPF-------SDLVPEVFRSPVSHYRMRAEFRIWHDGDD 58 L Y QL K + + + + + +YR +A+++I + Sbjct: 88 LAHLSYPKQLEFKQHLILESLRKYHPRDYIKYKVKKTIPTPNAWNYRNKAQYQIEFNKGK 147 Query: 59 LYHIIFDQQTKSRIRVDSFPAASEL-------INQLMTAMIAGVRNNPVLRHKLFQIDYL 111 ++ ++ I + P ++ I +L+ + + + + I Sbjct: 148 SKLGLYAPNSRRLIDLPDMPTQTKETQKVEREIKKLIDKLHIRIADFRRHTDGIKTIAVR 207 Query: 112 -TTLSNQAVVSLLY------HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELD 164 + + + V+L+ KL + + + + + KT Sbjct: 208 QSNATGEIQVTLITIGKKIKDLKLLASHIMKLPNVVSVFQNETQWQNPQVWGNKTIKLFG 267 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGN 223 + +I E + ++ +F Q N + AL + L++ Y G G Sbjct: 268 KSHITEEI----LGKKFKLSPRAFFQLNPEQTTTLYSEALKYLDLTPDQTLIDAYAGVGT 323 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 + + +V+ E +V AQ N NH+ N + I+ E+ + Sbjct: 324 LGILASDQVRQVIGIESIPEAVIDAQENCRLNHVRNAEYIQGNVEKLLPELKN------- 376 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQTHK 341 + + VDPPR+GL + K + +Y+SCNP TL K+L LS + Sbjct: 377 -----QGVPINALIVDPPRTGLSKKLIKTLLEVKPETFVYVSCNPATLAKDLVLLSDAYD 431 Query: 342 VERLALFDQFPYTHHMECGVLLT-AK 366 V + D P T E L K Sbjct: 432 VRVIQPVDMMPQTPRWEGVTKLVLRK 457 >UniRef50_Q3A4B1 RNA methyltransferase, TrmA family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A4B1_PELCD Length = 434 Score = 289 bits (741), Expect = 9e-77, Method: Composition-based stats. Identities = 84/369 (22%), Positives = 137/369 (37%), Gaps = 26/369 (7%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 Y Q K + + D+ P V YR R + + + Sbjct: 83 QWLHLPYAEQCHWKETIFRDFLVRKLDVDSELVRPIVPSPQQWGYRSRVQLKCLNTPKGF 142 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + + + I VD P L+NQ + + + N R F + +Q Sbjct: 143 LVGFYRRGSHYVIPVDHCPILHPLLNQAKDLLRSWIENT---RWSQFVSQIDLAVDDQER 199 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 V + H L ++ L+ + N+ + + K ++ ++ + V E+ Sbjct: 200 VRAVVHC-LANDVDDFVTHLKPGALSANMGLFVQ-TGRKHNLQHVCGPVELLIEVDTPEL 257 Query: 180 IYRQVENSFTQPNAAMNIQMLEWAL-DVTKGSKGDLLELYCGNGNFSLALARNFDRVLAT 238 F Q N N M+ + + G +L+L+CG GNFSL +AR V+ Sbjct: 258 RLGYGPGGFAQINLPQNRAMVREVVGTLVSNPPGRVLDLFCGMGNFSLPVARLAQEVVGV 317 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E S+ A+ N N I+NV RE + + + Sbjct: 318 EAYLQSIEMARLNARLNEIENVSFFA-------------REAYGAATEYGADGAIDLVIM 364 Query: 299 DPPRSGLDSETEKMVQAYP-RILYISCNPETLCKNLE-TLSQTHKVERLALFDQFPYTHH 356 DPPRSG ++V P RILY+SC+P TL ++L L +++ FD FP+THH Sbjct: 365 DPPRSGAYDVARELVTVRPARILYVSCDPPTLVRDLLPLLHNGYRLVWSRPFDLFPHTHH 424 Query: 357 MECGVLLTA 365 E L Sbjct: 425 TESITFLER 433 >UniRef50_D1VTT0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTT0_9FIRM Length = 518 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 75/366 (20%), Positives = 156/366 (42%), Gaps = 35/366 (9%) Query: 10 QYEAQLAEKVVRLQSMMAPFSDLVPEVF----RSPVSHYRMRAEFRIWHDGDDLYHIIFD 65 +YE L K + + + S+L +V +YR +F++ + ++ Sbjct: 85 KYEKSLDWKKQSVNNKLQRISELDIKVSKVNSSEKTFNYRNNMQFQV----KNGKIGLYM 140 Query: 66 QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125 + +K + ++ S N+ + + + + T +Q ++ + Sbjct: 141 KNSKEIVPIEHCLMQSTNANKTLKILTKFKNLEKIKT-----LGIRTNYKDQVMLIISSK 195 Query: 126 KKLDDEWRQEAEALRDALRAQNLNVHL---IGRATKTKIELDQDYIDERLPVAGKEMIYR 182 +K++ + + + + N++ + + Q+Y++E++ ++ Y+ Sbjct: 196 EKINKLNLILGDLIDANVVSIYENINNRKNAHYGDEFNLLYGQEYLEEKI----NKLYYK 251 Query: 183 QVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDRVLATEIA 241 SF Q N + A++ + + +LY G G SL +A + L EI Sbjct: 252 LSPASFFQVNREQAENLYNKAMEFLQVKENEKIADLYSGVGTLSLEIASRKAQTLGVEIV 311 Query: 242 KPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPP 301 + ++ A+ N N + + I +EE + + + + + I VDPP Sbjct: 312 EEAIEDARINAQKNKL-QARFICGKSEEILEKIQTD-----------EKIKMDKILVDPP 359 Query: 302 RSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMEC 359 R G+D + + Y +I+YISCNP TL ++L+ L + +KVE++ +FD FPYT H+E Sbjct: 360 RKGMDKKLVDYLNKNSYEKIVYISCNPATLARDLKILKEKYKVEKVEIFDLFPYTSHVEV 419 Query: 360 GVLLTA 365 LL+ Sbjct: 420 ITLLSK 425 >UniRef50_A1TSE0 23S rRNA (uracil-5-)-methyltransferase rumA n=18 Tax=Proteobacteria RepID=RUMA_ACIAC Length = 491 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 139/391 (35%), Gaps = 40/391 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH--DGDDL 59 + AQ+A K L+ + + E P+ YR RA + H + Sbjct: 109 MQHLHVGAQVAVKQRVLEDNLWHLGKVKAETVLRPIEGPAWGYRYRARLAVRHVEKKGKV 168 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 +++++ ++ P ++ ++ + A + + R QI+ Sbjct: 169 LVGFHERKSRYIADMEVCPVLPPHVSAMLLPLRALIASMDA-RDTCPQIELACGDD---- 223 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 V+ L + L+ + LR A + L + T LD+ + + Sbjct: 224 VTALVLRHLEPLSEADLGRLRSFAAAHGVQWWLQPKGPDTVHLLDEGGPQLNYALPDFGI 283 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARNFDRVLAT 238 FTQ N +N ++ AL + G +++ +CG GNF+L +A V+ Sbjct: 284 TMPFKPTDFTQVNPHINRVLVTRALRLLDAGRTDRVIDWFCGLGNFTLPIATQAREVVGI 343 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E ++ VA ++ N N D Q +A F F + + + V Sbjct: 344 EGSEALVARSRENYRKNQDDRPQGQALAPATFVAR----NLFEMTPEMLIADGVADKWLV 399 Query: 299 DPPRSGLDSETEKMV----------------------QAYPRILYISCNPETLCKNLETL 336 DPPR G + + + RI+Y+SCNP TL ++ L Sbjct: 400 DPPREGAFALAKALADIHQARIGAEDAPALPASAEGWTPPQRIVYVSCNPATLARDAGLL 459 Query: 337 --SQTHKVERLALFDQFPYTHHMECGVLLTA 365 ++ + + FP+T H+E + Sbjct: 460 VHQAGYRCVAAGVVNMFPHTAHVESMAVFER 490 >UniRef50_B2U9U3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Proteobacteria RepID=RUMA_RALPJ Length = 450 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 140/383 (36%), Gaps = 42/383 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV----FRSPVSHYRMRAEFRIWHD--GDDL 59 + AQ+A K L+ + + L P+V P YR RA + H + Sbjct: 86 MQHLDSRAQVAIKQRVLEDDLWHLAKLRPDVVFRPIAGPDWGYRYRARLTVRHVAAKGGV 145 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 ++++ + S ++ L+ + V ++ ++ QI+ Sbjct: 146 LVGFHERKSSYVADMTSCEVLPPHVSALLVPLRELVGRLSIV-QRMPQIELAVGQD---- 200 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD--YIDERLPVAGK 177 V+ L + L+ ++ LR N+ L + T + LP G Sbjct: 201 VTALVLRNLEPITAEDEAELRAFADHHNIQFWLQPKGPDTVYPFYPLDRTLTYTLPEFGI 260 Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVL 236 M ++ FTQ N +N ++ AL + GD LL+L+CG GNF+L +A V+ Sbjct: 261 TMPFK--PTDFTQVNHQINRVLMSRALKLLDAQPGDRLLDLFCGIGNFTLPMATRAREVM 318 Query: 237 ATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCET 295 E ++ A N N + E + + Sbjct: 319 GIEGSEALTTRALANAQHNGLHTKTSFACRNLFEV------------SADDVAALGKFDR 366 Query: 296 IFVDPPRSGLDSETEKMVQ-----------AYPRILYISCNPETLCKNLETL--SQTHKV 342 +DPPR G + ++ + + RI+Y+SCNP TL ++ L +++ Sbjct: 367 WLIDPPREGALAVSKALAELSQSGGDAADLLPKRIIYVSCNPATLARDAGLLVHEAGYRL 426 Query: 343 ERLALFDQFPYTHHMECGVLLTA 365 + + FP+T H+E + Sbjct: 427 AGAGVVNMFPHTSHVESMAVFER 449 >UniRef50_B7VK72 23S rRNA (uracil-5-)-methyltransferase rumA n=81 Tax=Gammaproteobacteria RepID=RUMA_VIBSL Length = 442 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 79/369 (21%), Positives = 145/369 (39%), Gaps = 27/369 (7%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRS---PVSHYRMRAEFR--IWHDGDDL 59 HL Y +Q+ K L +M+ + EV S YR RA + L Sbjct: 92 HLQHLGYSSQVEHKSQSLTHLMSKYQTANTEVALPIVGDESGYRRRARISLFVDKKTQLL 151 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 +Q+K + +N L+ + + + L L ++ + + + Sbjct: 152 QFGFRKKQSKQIENITDCAVLDPRLNVLLPKLKSLLNTFSSL-TSLGHVELVLGDTGPVM 210 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 V L + K L ++ Q L + + ++ + K + + + Sbjct: 211 V-LRHLKPLVEKDEQALMTLMTLAKEEGATLYSMPETDKLVRLVGDAP-----SYSETGV 264 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLAT 238 N F Q N +N QM+ A++ + +L+L+CG GNFSL +A+ V+ Sbjct: 265 TLPFEPNHFIQVNQKVNQQMVAQAIEWLEPQADERVLDLFCGLGNFSLPIAQQSAFVVGV 324 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E V A N A N + N + + EE + + + + + Sbjct: 325 EGVDEMVQQATANAALNQLSNTEFYQANLEEDLSS------------QLWAKEKFDKVLL 372 Query: 299 DPPRSGLDSETEKM-VQAYPRILYISCNPETLCKNLETLS-QTHKVERLALFDQFPYTHH 356 DP R+G +++ R++Y+SCNP TL ++ E+L Q +++ +L + D FP+T H Sbjct: 373 DPARAGASGIVDQISALGAKRVVYVSCNPATLARDSESLEKQGYQLAKLGMLDMFPHTSH 432 Query: 357 MECGVLLTA 365 +E L Sbjct: 433 LESMALFIK 441 >UniRef50_D1RBR4 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RBR4_9CHLA Length = 484 Score = 287 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 84/404 (20%), Positives = 147/404 (36%), Gaps = 57/404 (14%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV----PEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 Y QL K +++++ + P + YR + EF D + Sbjct: 91 WQQMGYAEQLRLKEEKIRALFSAILTPDVQFFPIIPCDDPWQYRNKMEFSFSTDLSQNKY 150 Query: 62 IIFDQQTKS--RIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQI 108 + + + + + RN LR + Sbjct: 151 LGLIMDSSRGKVFNLTECHLTNSWFVDALKVTRNWWESSKLDAYHHYRNTGSLRTLTLRE 210 Query: 109 DYLTTLSNQAVVSLLYHKKLD-----DEWRQEAEALRDALR--------AQNLNVHLIGR 155 T +V L D ++ LR ++ + L +H I + Sbjct: 211 GQRT---GDRMVILTVSGNPDYALHKNDLDAFVAGLRASIELDRPECRLSIFLRIHQIAK 267 Query: 156 ATKTK----IELDQDYIDERLPVAGKE------MIYRQVENSFTQPNAAMNIQMLEWALD 205 ++ + D I E+L + + + + ++F QPN ++ AL Sbjct: 268 GMASQFYEMVLYGPDQIREKLYIQSQSEEQPVPLEFNISPSAFFQPNTRQAERLYSLALQ 327 Query: 206 VTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIR 264 ++ S + +LYCG G S+ L++ V+ EI +V A+ N A N NV + Sbjct: 328 LSSISTPITVYDLYCGTGTLSICLSKFAKTVVGVEICPEAVLDARSNAAKNGCSNVHFLC 387 Query: 265 MAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYI 322 A E + F + + VDPPR+GLD + + + +ILY+ Sbjct: 388 GAVHEQLTKIIEENLFPL----------PDLVVVDPPRAGLDPHALQHLIKLSPKKILYV 437 Query: 323 SCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTA 365 SCNP T N+ L SQ +++E + DQFP+T H+E +LT Sbjct: 438 SCNPLTQVDNISNLISQGYRLEAMQPVDQFPHTIHIENIAVLTK 481 >UniRef50_Q29DJ3 GA17699 n=7 Tax=Drosophila RepID=Q29DJ3_DROPS Length = 631 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 82/422 (19%), Positives = 163/422 (38%), Gaps = 68/422 (16%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS----DLVP------------EVFRSP-VSHYRMR 47 L Y+ QL +K + +++ ++ + P EV SP V+ YR + Sbjct: 159 PLAGITYDDQLKQKSEEMSTLLKKYTQELRKINPQAKPHLDSFKFNEVLPSPTVNGYRNK 218 Query: 48 AEFRIWHDGDDLYHIIFDQQTK-----SRIRVDSFPAASELINQLMTAMIAGVRNN---- 98 EF + + + + F + V P + + VR + Sbjct: 219 NEFTVGKNSEGEVVVGFRLGSYSDGSVEVAEVQDLPHLPDQAKWAAQSFQKLVRQSKFQP 278 Query: 99 -------PVLRHKLFQIDYLTTLSNQAVVSL-LYHKKLDDEWRQEA-EALRDA------- 142 R + + ++ + + ++ +Y L ++ +QE + L+ Sbjct: 279 FNPDGNVGHFRQLMVRC---SSATGELMLVAGIYSSNLSEDEQQELKQELKSFYEHASEQ 335 Query: 143 ----LRAQNLNVHLIGRATKTKIELDQDYI--DERLPVAGKEMIYRQVENSFTQPNAAMN 196 + +L + ++ D+I + + + +R +F Q N Sbjct: 336 DDATFKCTSLYYQDVKHREAGQMVNPVDHILGTTHITDTIQGLQFRISPLAFFQINTEGA 395 Query: 197 IQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAAN 255 + + A+D+ +K +L++ CG G +LA A++ RVL EI ++ AQ+N AN Sbjct: 396 NVLYQQAIDLVAPTKDTTMLDICCGTGTIALAFAKHCKRVLGVEIVPDAIKDAQFNAEAN 455 Query: 256 HIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ- 314 I N + A++F ++M + + G + VDPPR+GL + + ++ Sbjct: 456 GIKNCKFFTGNADDFIKSMVREAMYEQEPGKPVDL----IAVVDPPRAGLHNRSIAAIRS 511 Query: 315 --AYPRILYISCNPETLCKNLETLS---------QTHKVERLALFDQFPYTHHMECGVLL 363 A R++Y+SCNP + +N L+ + + D FP+T H E +L Sbjct: 512 ASAINRLVYVSCNPHSAKRNFIELARPESKHYKGEPFYPKSAVAVDMFPHTTHTELVILF 571 Query: 364 TA 365 Sbjct: 572 ER 573 >UniRef50_Q4USG1 23S rRNA (uracil-5-)-methyltransferase rumA n=22 Tax=Gammaproteobacteria RepID=RUMA_XANC8 Length = 444 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 147/373 (39%), Gaps = 31/373 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH-DGDDLY 60 L + Q+ K L + + P+ + YR + F + + D Sbjct: 91 LQHLEESQQIVAKQRVLMDNLERIGHVTPQTVLPALVGDTWGYRRKGRFSVRRVEKKDKT 150 Query: 61 HIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + F + + + I + + + A V R QI+++ Sbjct: 151 LVGFRELDPRFVADLSVCYTVIPQIGEKIPQLAALVEGMDGKRDI-PQIEFIAGDD---- 205 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL--DQDYIDERLPVAGK 177 L + L ++ +AL + +A + + L + L + + RLP Sbjct: 206 AVALTIRHLQPLSARDEQALVEFAQAHDFAIFLQPGGVDSVHPLWPQEVPLSFRLPKWDV 265 Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVL 236 E+ +R F Q NA++N +M+ AL + D +L+L+CG GNF+L LAR V+ Sbjct: 266 ELAFR--PLDFIQVNASLNQKMIAHALALLDAKPDDRVLDLFCGLGNFTLPLARTVREVV 323 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 E VA A+ N N +DN Q + + +R + + Sbjct: 324 GVEGDAGLVARARENAQRNGLDNAQFYAADLTQDQRQTAWMR------------QGFDKL 371 Query: 297 FVDPPRSGLDSETEKM-VQAYPRILYISCNPETLCKNLETL--SQTHKVERLALFDQFPY 353 +DPPRSG +++ ++ + RI+Y+SC+P +L ++ L Q + D FP+ Sbjct: 372 LLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFSLLSAGAMDMFPH 431 Query: 354 THHMECGVLLTAK 366 T H+E + + Sbjct: 432 TAHVESIAVFEKR 444 >UniRef50_B7C8N4 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8N4_9FIRM Length = 457 Score = 286 bits (733), Expect = 8e-76, Method: Composition-based stats. Identities = 72/375 (19%), Positives = 148/375 (39%), Gaps = 34/375 (9%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPF----SDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 L +Y AQ K L+ + + ++P + YR + + +LY Sbjct: 76 LMHVKYPAQCKMKEGNLKETLIKYADYNGRILPIIKNPEPLSYRNSCKLPFGEEYGELYT 135 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN-----PVLRHKLFQIDYLTTLSN 116 ++++ T +++ S+L+ Q A++ + + + ++ + + Sbjct: 136 GMYERDTNHFQKMERCYVHSKLLEQTRQAVLKIMNEHHLKMYDDKKKTGYRTLVMKEFDS 195 Query: 117 QAVVSLLYHK-KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ---DYIDERL 172 + + + K L +E+ + L + ++ + + + +E++ Sbjct: 196 KIQIIFVTGKENLSEEFIHDVTQLEGVV-----SIWQSVKTETKREVFGDMRFIWGEEKM 250 Query: 173 PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNF 232 + +++ + SF Q N ++ + D SK + E Y G G SL + Sbjct: 251 HLQLEDIQLSLLPRSFFQLNTKQSVNLYNVVKDWMPRSKTTV-EAYSGIGAISLFVKDKA 309 Query: 233 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 ++ E + +V A N NH DNV I A + ++ Sbjct: 310 QEIIGVESIQDAVDNANENAMLNHADNVSFICEDAGSALAHLVQEKDV------------ 357 Query: 293 CETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQ 350 +T+ VDPPRSGLD ++ + ++Y+SCNP TL K+L L + +++ ++ D Sbjct: 358 -DTLIVDPPRSGLDDTMKETILKSKIKTMIYVSCNPATLAKDLGVLKKEYRIVKIQPVDM 416 Query: 351 FPYTHHMECGVLLTA 365 F T H+E LL Sbjct: 417 FSQTPHVESVTLLVR 431 >UniRef50_C8WGH7 RNA methyltransferase, TrmA family n=4 Tax=Coriobacteriaceae RepID=C8WGH7_EGGLE Length = 461 Score = 286 bits (732), Expect = 8e-76, Method: Composition-based stats. Identities = 75/387 (19%), Positives = 143/387 (36%), Gaps = 44/387 (11%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD---------LVPEVFRSPVSHYRMRAEFRIWHD 55 Y+AQL K + + + + + P + YR + E D Sbjct: 92 PWQHLSYDAQLEAKRANVAAALERTAKFGRERAEELVRPCLPSKRQWGYRNKLELGAAMD 151 Query: 56 GDDLY-HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-NNPVLRHKLFQIDYLTT 113 + + + P A + I + A+ +R +F++ + Sbjct: 152 ERGTFQLGFHREGAHDIASPGACPLAHDAIAKAPKALRGALRFAQGSADLGIFRVGVRHS 211 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDER-- 171 L + L+ A+ ++ A++A ++ V ++ K + + +D + Sbjct: 212 LHTGDLEVALWTSPGSFPRGHIAKTVKSAVKATSI-VRVMADPGKARKIKGVETLDGKGC 270 Query: 172 LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD----------LLELYCGN 221 + Y SF Q N A +++ ++ G G+ + +LY G Sbjct: 271 WEEQLGDARYLASAPSFFQVNTAQAEKLIACVIEGLGGRMGEDGPEGLDDLLIADLYAGG 330 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G FS+ LA+ VLA E A SV + N N +D +++I A + G+ Sbjct: 331 GTFSVPLAQAGAEVLAVEAAGSSVRDLRRNADMNRVD-LEVIGGDAARELPELGGL---- 385 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETLS-Q 338 + + VDPPR+GL + A R+ Y+SCNP T +++ Q Sbjct: 386 ------------DALVVDPPRAGLADGVVESIAAAAPERVAYVSCNPATWARDVARFESQ 433 Query: 339 THKVERLALFDQFPYTHHMECGVLLTA 365 +++ + D FP T+H+E + Sbjct: 434 GYRLTSVQPVDMFPQTYHVEVVSVFER 460 >UniRef50_A8REE9 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8REE9_9FIRM Length = 451 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 141/386 (36%), Gaps = 40/386 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS---DLVPEVFRSPVSHYRMRAEFRIWHDGDDLY- 60 L + Q K ++ + + + HYR + D Sbjct: 82 QLMHRKQSNQAQYKKEQVVELCKKQRLSIPVEDVLCAGNPYHYRNKMIIGFQKGRDKRIK 141 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMT-----------AMIAGVRNNPVLRHKLFQID 109 +++ + I ++ + + ++ + R +LRH L + Sbjct: 142 AGFYEEFSHRIIPYEACLLHPKECDDIVQSIVSLIQKLAIEIYDEDRRTGLLRHVLIRYG 201 Query: 110 YLTTLSNQAVVSLLY----HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ 165 +T V +KL +E + + ++ N I + +I + Sbjct: 202 KVTKQIMVVFVVSSNVFPARRKLVEELLKAHPNITTIVQNVNPRKTSIVLGNEERILYGK 261 Query: 166 DYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNF 224 YI++ L + ++ SF Q N + ALD + ++ L+ YCG G Sbjct: 262 GYIEDIL----CGLRFKISCKSFYQINHDQCEVLYTKALDKLMLTGNEVVLDAYCGIGTI 317 Query: 225 SLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 284 + +A +V+ E+ K +V A N N I N++ + A F + Sbjct: 318 GMCVASKVKQVIGVELNKDAVKDAIQNAKLNRIRNIRFLCDDAGSFMSQL---------- 367 Query: 285 GIDLKSYQCETIFVDPPRSGLDSETE--KMVQAYPRILYISCNPETLCKNLETLSQ-THK 341 + + +DPPRSG E P+ILYISCNP T +++ L + ++ Sbjct: 368 --AKAQQTLDVLIMDPPRSGSSQEFLSSAARLRVPKILYISCNPNTQIRDIRMLQKLGYR 425 Query: 342 VE-RLALFDQFPYTHHMECGVLLTAK 366 VE + L D FP+T+ +E +L K Sbjct: 426 VEGSMTLVDMFPFTNSIESVCMLVRK 451 >UniRef50_D0L0T9 RNA methyltransferase, TrmA family n=2 Tax=Chromatiales RepID=D0L0T9_HALNC Length = 442 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 73/371 (19%), Positives = 146/371 (39%), Gaps = 28/371 (7%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH--DGDDL 59 + E QLA K L + + P + YR +A + + + Sbjct: 86 MQHLTSEKQLATKEQALLDQLQRIGKVSPATVLPALARANWGYRRKARLGVKYVQKKGRV 145 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 ++ T + + + + +T + + ++ R ++ QI+ A+ Sbjct: 146 IVGFRERHTHFLSDLQNCRVLDPRVGERLTEIGEII-HSLEARERIPQIEVACGDDRVAL 204 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYI-DERLPVAGKE 178 V + LD + + E LR+ + +++L + + LD+ ++ + Sbjct: 205 V----FRNLDPLSQSDKEKLRNFGTQEGFDIYLQPGSNDSVHPLDKAHVAPLTYAHPSFD 260 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLA 237 + F Q N +N M+ AL+ GD +L+L+ G GNF+L +AR +V A Sbjct: 261 VSIEFTPLDFIQINTDVNRAMIVQALEWLDVQPGDHVLDLFAGLGNFTLPIARKAAKVTA 320 Query: 238 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 E+ + V + AAN I N + + F + + Sbjct: 321 VELDEHMVKRGAQSAAANGITNTEHVIGNL------------FEPDPTHLWMQQTYDRVL 368 Query: 298 VDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL--SQTHKVERLALFDQFPYT 354 +DPPR+G ++ + + A RI+Y+SC+P +L ++ L +++ + D FP+T Sbjct: 369 LDPPRAGAEAMMPHIARFAPERIVYVSCHPGSLARDAHILVREHGYRLIAAGVMDMFPHT 428 Query: 355 HHMECGVLLTA 365 H+E + Sbjct: 429 SHIESMAVFER 439 >UniRef50_D0W3B9 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W3B9_NEICI Length = 461 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 75/371 (20%), Positives = 144/371 (38%), Gaps = 27/371 (7%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGD-DLY 60 L AQ+A K ++ + + P+ P+ HYR RA F + D L Sbjct: 92 LQHISPTAQVAFKQRIMEEQLERIGKVKPKQILPPIYGHVWHYRDRARFSVSLDKSCRLK 151 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 ++T + + S + ++ + A+ +++ ++ V+ Sbjct: 152 LGFQAKKTNDVVGISSCMLIPKPVSDKLPAIRELLQDLAEGGSIARFAEFYRGSE-ITVL 210 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQ--DYIDERLPVAGKE 178 ++ + KL D+ + + + L ++ Q + LP G E Sbjct: 211 NIAFKSKLRQNDESRIRQWFDSELSDDWQIWLQIEGKVSEPFYPQKDTILKYTLPEFGIE 270 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLA 237 M +R FTQ N N M+ A+ + +G + +L+CG GNFSL +A++ V+ Sbjct: 271 MPFR--PGDFTQINTDTNRLMVSRAIKMLDIRQGERVADLFCGLGNFSLPIAKSGASVVG 328 Query: 238 TEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 E A+ V A+ N N I + T+ + + + Sbjct: 329 VEGAENLVGRARQNARLNGCGGQTDFIAANLFDCTENTVA------------SWGKFDKM 376 Query: 297 FVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPY 353 +DPPRSG + +I+Y+SCNP TL ++ L + + + ++ + + F + Sbjct: 377 LIDPPRSGAYEVVRSLKPPYLPKKIVYVSCNPSTLARDAGVLVEKGYILGQVGIMNMFAH 436 Query: 354 THHMECGVLLT 364 T H+E + Sbjct: 437 TSHVESIAVFE 447 >UniRef50_UPI0001C3384C 23S rRNA m(5)U-1939 methyltransferase n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C3384C Length = 448 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 72/377 (19%), Positives = 147/377 (38%), Gaps = 51/377 (13%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIWHDG-DD 58 E QL K ++ + ++P + S + YR +A + + + + Sbjct: 83 QWQHISPEYQLYIKQNKIIQSLQRIGRFKDVFVLPILSSSQIFGYRNKATYPLGYSKFGN 142 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-----------LRHKLFQ 107 + + + + I ++ P +N + + + LRH + Sbjct: 143 VNAGYYQRYSHKLINLNQCPIQDSRLNSFLAEIKVDIEKQGWSIYNEKTYQGHLRHLALR 202 Query: 108 IDYLTTLSNQAVVSLLYH-------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK 160 I S + +++L+ K+ W + L L +N + +T Sbjct: 203 IG---QNSGEVLLTLISTTGNITKIKEQAKLWLERYPNLVGVLVNKNSEKNNKIFGNQTF 259 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYC 219 + + ++ ER + ++ ++F Q NA +L LD + + +++ YC Sbjct: 260 SIVGKPFLKERF----FNIDFKLRPDTFFQVNAQSAETLLHSLLDNLILTGKEKIVDAYC 315 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G F+L LA+ + EI+ S+ A+ N N+I+NV+ + A ++ +N Sbjct: 316 GIGTFTLPLAKRISHAIGIEISHDSIEQAKANAELNNINNVEFYQGAVKDILPTLN---- 371 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLS 337 + + +DPPR G D + ++ P I+YISC P TL ++L+ + Sbjct: 372 -----------IFPDIVLLDPPRKGCDDSVIETLREICPPLIIYISCQPSTLARDLKKIC 420 Query: 338 --QTHKVERLALFDQFP 352 +K+ + D FP Sbjct: 421 YQNLYKILWVQPVDFFP 437 >UniRef50_A7MQZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Enterobacteriaceae RepID=RUMA_ENTS8 Length = 432 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 83/367 (22%), Positives = 138/367 (37%), Gaps = 31/367 (8%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFR--IWHDGDDLYH 61 + Q K L MM V EV P YR RA L Sbjct: 91 QQ-QHASVALQQRSKAQALCRMMKR---EVDEVISGPAWGYRRRARLSLNFTPRKPGLQM 146 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVS 121 + + V P + L+ + + + +RH L ++ + S +V Sbjct: 147 GFRKAGSNDLVDVHRCPVLVPRLEALLPKLRDCLSSLDGVRH-LGHVELVDVTSGPLMVL 205 Query: 122 LLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIY 181 + L + E L ++ + ++L ++ + + E + Sbjct: 206 ----RHLKPLSAADREKLECFSHSEGVALYLAPQSDTLEHLNGEMPWYES-----DGLRL 256 Query: 182 RQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEI 240 F Q N A+N QM+ AL+ + G +L+L+CG GNF+L LAR + V+ E Sbjct: 257 TFSPRDFIQVNDAVNQQMVARALEWLEIQPGERVLDLFCGMGNFTLPLARRAESVVGVEG 316 Query: 241 AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP 300 V YN N + NV + EE + + +DP Sbjct: 317 VAALVEKGDYNAGLNALKNVTFFQHNLEEDVTR------------QPWAQQGFDKVLLDP 364 Query: 301 PRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLE-TLSQTHKVERLALFDQFPYTHHME 358 R+G + +V+ R++Y+SCNP TL ++ E L+ ++ RLA+ D FP+T H+E Sbjct: 365 ARAGAAGVMQHIVKLKPRRVVYVSCNPATLMRDSETLLAAGYRTVRLAMLDMFPHTGHLE 424 Query: 359 CGVLLTA 365 L Sbjct: 425 SMALFER 431 >UniRef50_C7NAY8 (Uracil-5)-methyltransferase n=3 Tax=Leptotrichia RepID=C7NAY8_LEPBD Length = 476 Score = 284 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 70/401 (17%), Positives = 143/401 (35%), Gaps = 56/401 (13%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD----LVPEVFRSPVSHYRMRAEFRIWH--DGDD 58 + Y+ QL K ++ + V YR + EF + G Sbjct: 89 NYQYYTYDEQLEIKTEHIKKELDRIIKYDYIFEEPVRSVKPDKYRNKMEFSFGNAAKGGP 148 Query: 59 LYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVRNNPV-LRHKLFQIDYLTTL-- 114 + + Q + + VD + N++ + H+L I + L Sbjct: 149 IILGLHKQNSFHDIVEVDGLKLMDDNFNKIYVFCNEFCKKTGFDFYHRLDHIGFFRNLVI 208 Query: 115 -----SNQAVVSLLYHKKLDDEWRQEAEA----------------LRDALRAQNLNVHLI 153 + Q +V+++ ++ + +++ + + L N N + Sbjct: 209 RKAEFTKQILVNIVTTTQISEMEKEKFQKEFKEGLLALNLDDNFKITGILHTFNDNFSDM 268 Query: 154 GRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKG---- 209 + I + + E + + ++ SF Q N+ ++ L + Sbjct: 269 VISESETILYGERDLTEEI----FGLKFKISPYSFFQTNSQTVEKLYGKVLTYLEEIENI 324 Query: 210 --SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAA 267 + + +L+ G G +++ +V E+ +V A N N+I N I Sbjct: 325 KIDEATVFDLFSGTGTIGQIVSKKAKQVYGIELVPEAVEKANENAKLNNIQNAHFIAGDV 384 Query: 268 EEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCN 325 F +L D + + + +DPPR+G+ +T + Y I+Y+SCN Sbjct: 385 ------------FAKLDEFDNDGIKPDILILDPPRAGVGEKTITKLVKYNTKNIIYVSCN 432 Query: 326 PETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 P+TL +L + +++ R ++ D FP T H+E LL Sbjct: 433 PKTLMTDLIKFGEFGYRLVRCSVVDMFPVTPHLEVVCLLEK 473 >UniRef50_A4EB67 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4EB67_9ACTN Length = 482 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 72/402 (17%), Positives = 146/402 (36%), Gaps = 64/402 (15%) Query: 10 QYEAQLAEKVVRLQSMMAPFSD-----LVPEVFR----------SPVSHYRMRAEFRIWH 54 Y+ QLA K ++ + A + + P +R +A Sbjct: 100 PYKKQLAAKQAAMEELFASLCEREDIAVDPIRGMGVTLGDPGKYPAPRGFRHKAATPFAP 159 Query: 55 DGDD-LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLR 102 + + F++ T + V P + Q++ + ++ +LR Sbjct: 160 GKEGAVRCGFFERGTHKIVAVPECPVEAPGARQILNGIAREAERLHIPAFNEDKHLGLLR 219 Query: 103 HKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEA-------LRDALRAQNLNVHLIGR 155 + + + + T +Q +V+L+ ++ ++ EA + + N Sbjct: 220 YAVVRCGWRT---DQVMVTLVTAQRDLPHAQEFFEAVAALNPHIVTVAQNINGRPGNAIL 276 Query: 156 ATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL 215 +T+I + + ++L + +F Q N + + A+D +GD+L Sbjct: 277 GEETRIVYGAECMRDQL----LGCEFDISPTAFYQTNPQQTELLYQLAIDGMDLQQGDVL 332 Query: 216 -ELYCGNGNFSLALARNFDR------VLATEIAKPSVAAAQYNIAANHIDN-VQIIRMAA 267 + YCG+G L A+ +L E +A A+ N N + + A Sbjct: 333 MDAYCGSGTIGLCAAKAAQDKGVGIMLLGVERNHAGIADARRNAELNGLTRSAWFMADDA 392 Query: 268 EEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCN 325 ++ E + + + +DPPR+G E + RI YISCN Sbjct: 393 TDYILDAADNNE------------RVDVLSIDPPRAGSTPEFLEAACALKPRRITYISCN 440 Query: 326 PETLCKNL-ETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 P T ++L + L +++ ++ D FP+T H E +L + Sbjct: 441 PVTQERDLHQLLDGGYRLLKITPVDMFPHTDHTETVAVLERR 482 >UniRef50_A8H1S1 23S rRNA (uracil-5-)-methyltransferase rumA n=7 Tax=Shewanella RepID=RUMA_SHEPA Length = 445 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 81/368 (22%), Positives = 147/368 (39%), Gaps = 28/368 (7%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDG--DDL 59 L EAQ K L ++ F+ +P+ HYR RA W D + Sbjct: 94 LQHLDIEAQRKHKANTLVDLVNKFAQTQASEVCAPLSGDAWHYRRRARLATWFDKNTKHI 153 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + + + S +E ++ L+ + A + N + L ++ LT N Sbjct: 154 SLGFRASSSSDVVEIQSCAVLAEPLSALIPDL-AFMLNQLSGKKALGHVE-LTQADNGNF 211 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 V L K L D ++ L + + V L + + ++G ++ Sbjct: 212 VVLRVTKVLSD---KDKARLVEFANKHEVIVLLQDDDAQCEHLNGAGEQPF-YALSGSDI 267 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLAT 238 +F Q N +N M+ A++ G +L+L+CG GNFSL LA++ V+ Sbjct: 268 KLNFSPGNFIQVNGPVNQAMVSQAVEWLSPKAGERVLDLFCGIGNFSLPLAKDGAEVIGV 327 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E V A+ N + +D V + + + + + + Sbjct: 328 EGVVAMVEQARVNAKQSGLDKVAFYHAD-------------LSADLSKEPWLGKVDKMLI 374 Query: 299 DPPRSGLDSETEKMVQAYPR-ILYISCNPETLCKNLE-TLSQTHKVERLALFDQFPYTHH 356 DP R+G + + + P+ ++Y+SCNP +L ++ E L Q ++++++ L D FP THH Sbjct: 375 DPARAGAYESMQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQLKKIGLIDMFPQTHH 434 Query: 357 MECGVLLT 364 +E L Sbjct: 435 LESMALFE 442 >UniRef50_Q14IC3 23S rRNA (uracil-5-)-methyltransferase rumA n=20 Tax=Gammaproteobacteria RepID=RUMA_FRAT1 Length = 449 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 72/375 (19%), Positives = 152/375 (40%), Gaps = 31/375 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFS-DLVPEVFRSPV-----SHYRMRAEFRIWH--DGD 57 L +AQ+ K L + + + PE P+ YR +A + + Sbjct: 90 LQHMSTDAQIEHKQQTLINQLKYIGNGVEPENILPPLRTSNTEGYRNKARLGVRYVSKKG 149 Query: 58 DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQ 117 + ++ + +D + L+ +T + + + + +H Q++ + Sbjct: 150 KILVGFRERNGRFLADIDKCIVLNPLVGDKITEISSFIETLSIYQHIA-QLEIAIDDTRP 208 Query: 118 AVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKT--KIELDQDYIDERLPVA 175 A++ + L+ ++ E LR + N ++L + T ++ D ++L Sbjct: 209 AMIV----RHLEPFTNEDLEKLRSFAQENNYWIYLQSKGPDTIFRLYPQGDVEPKKLSYQ 264 Query: 176 -GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFD 233 + N FTQ N +N +M++ A+++ S+ D +++L+CG GNF+L ++++ Sbjct: 265 PAAGIDIGFEPNDFTQVNNDINKKMIKRAIELLDISENDSIIDLFCGLGNFTLPISQHAK 324 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 V+ E V A+ N+I NV E + F + Sbjct: 325 TVIGVEGEPTMVKRAKETADNNNITNVNFYAANLFESFEDKEWFNNF-----------EY 373 Query: 294 ETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL--SQTHKVERLALFDQ 350 + +DPPR+G + + RI+Y+SC+ L ++ L ++ +K+ + D Sbjct: 374 NKMLLDPPRAGAQEVCNNIEKFNVKRIVYVSCDTAALARDAGILVNTKGYKLISAGVMDM 433 Query: 351 FPYTHHMECGVLLTA 365 FP+T H+E + Sbjct: 434 FPHTMHVESIAVFEK 448 >UniRef50_B5RIS0 FI05218p (Fragment) n=8 Tax=melanogaster subgroup RepID=B5RIS0_DROME Length = 640 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 83/424 (19%), Positives = 164/424 (38%), Gaps = 74/424 (17%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFS----DLVP------------EVFRSP-VSHYRMR 47 L Y+ Q+ +K + +++A ++ + P EV SP V+ YR + Sbjct: 191 PLSHIAYDQQIKQKSEEMSALLAKYTQELRKVNPRAKPHLDKFQFHEVLPSPTVNGYRNK 250 Query: 48 AEFRIWHDGDDLYHIIFD-----QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVL- 101 EF + + + F + V P E + VR + L Sbjct: 251 NEFTVGKNSVGEVVVGFRLGCYSDGSVEVAEVADLPHLPEQAKWAARSFQDLVRKSKFLP 310 Query: 102 ----------RHKLFQIDYLTTLSNQAVVSL-LYHKKLDD----EWRQEAEALRDALRA- 145 R + + ++ + + ++ +Y L + E +QE ++ + L Sbjct: 311 FNPDGNIGHFRQLMVRC---SSATGELMLVAGIYSSNLSEDEQVELKQELKSFYEDLAND 367 Query: 146 ----------QNLNVHLIGRA-TKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAA 194 Q++ G+ + +I + + + +R +F Q N Sbjct: 368 APYKCSSLYYQDVKHREAGQTINPVEHISGSTHITDTIQ----GLQFRISPLAFFQINTE 423 Query: 195 MNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIA 253 + + A+D+ +K +L++ CG G +LA A++ +V+ EI ++ A++N Sbjct: 424 GANVLYQKAIDLVAPTKDTTMLDICCGTGTITLAFAKHCKKVMGVEIVPDAIKDAEFNAE 483 Query: 254 ANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV 313 AN I N + A++F ++M +++ G L VDPPR+GL + + Sbjct: 484 ANGIKNAKFFTGNADDFIKSMVREALYDQEPGKPLDL----IAVVDPPRAGLHHRSIAAI 539 Query: 314 Q---AYPRILYISCNPETLCKNLETLS---------QTHKVERLALFDQFPYTHHMECGV 361 + A R++Y+SCNP + +N L+ + + D FP+T H E + Sbjct: 540 RSADAINRLVYVSCNPHSAKRNFIELARPESKQYKGEPFYPKSAVAVDMFPHTMHTELVI 599 Query: 362 LLTA 365 L Sbjct: 600 LFER 603 >UniRef50_B9KXM9 23S rRNA (Uracil-5-)-methyltransferase RumA n=3 Tax=Bacteria RepID=B9KXM9_THERP Length = 406 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 74/369 (20%), Positives = 132/369 (35%), Gaps = 67/369 (18%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWHDGDDL 59 +YE QL K ++ + P V YR A F + G+ L Sbjct: 90 QWQHIRYEYQLVLKQAVVRQQLRRIGKFDDPPVLPTVPSPQPYGYRNHARFSVDGKGN-L 148 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 +I +R+D IN+++ + V + + T + + Sbjct: 149 GYISRPGHGYRFLRIDRCLIMHPAINEVLRRLQE---RAHVKHQLMVRYGVNT---GELL 202 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 V H A I Q E L Sbjct: 203 V------------------------------HPDVSAIDPTIPSGQPAYHESL----LGH 228 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLALARNFDRVLAT 238 +R +SF Q N A+ ++++ L+ + +++ + Y G G F+ LA RV+ Sbjct: 229 RFRISASSFFQTNTAVAERLIQLVLERIAPTGNEVVVDAYAGVGTFAAFLAPRVARVIGI 288 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E + +V+ AQ N+ DNV+ ++ E + + + + + Sbjct: 289 EESPSAVSDAQVNLDP--FDNVEYVQAKVEHVLGKLA---------------VRPDVVIL 331 Query: 299 DPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTH 355 DPPR G E ++ PR++Y+SC+P TL ++L L +++ + D FP T+ Sbjct: 332 DPPRVGCAPEALTGVLMLRPPRLIYVSCDPATLARDLRKLVDGGYRLLDVTPLDMFPQTY 391 Query: 356 HMECGVLLT 364 H+E L Sbjct: 392 HIESVATLE 400 >UniRef50_C7GZ13 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ13_9FIRM Length = 399 Score = 283 bits (724), Expect = 8e-75, Method: Composition-based stats. Identities = 82/389 (21%), Positives = 160/389 (41%), Gaps = 56/389 (14%) Query: 10 QYEAQLAEKVVRLQSMMAPFS----DLVPEVFRSPVSHYRMRAEFRIWH--DGDDLYHII 63 YE QL K +++++ L+P + YR + EF + +L Sbjct: 24 SYE-QLKIKDELVKTLIDKKGLKVDTLLPIEKSPNMYRYRNKMEFTFGNSEREGELKLGF 82 Query: 64 FDQQT-KSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDYL 111 ++ ++ + + S N+++ A+ ++N LRH + + Sbjct: 83 HEKGNYRNIVDIHSCQLVDTDYNEILNAVRQFAFQNNYDFYNKKKHNGFLRHLVIRSGIR 142 Query: 112 TTLSNQAVVSLLYHKKLDDEWR-----------QEAEALRDALRAQNLNVHLIGRATKTK 160 T+ + +V+L+ + + L L N + + Sbjct: 143 TS---EIIVNLVTSSSDLANFNTESFVNLLTSLKLNNELVGILHTVNDKIQDTANGEDIR 199 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYC 219 I +DY ER+ ++ ++ SF Q N + +A++ + ++ +L+C Sbjct: 200 ILYGRDYYMERIM----DLDFKVRMGSFFQTNVQAAENLYRYAINSIDNVQDKVIFDLFC 255 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G + +LA +V+ +I+ ++ +A N N I+NV R E + +N Sbjct: 256 GTGTITQSLAGAAKKVIGVDISDDAIKSAIENTKLNKINNVSFYRGDVFEVIRNINE--- 312 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETE-KMVQAYPR-ILYISCNPETLCKNLETLS 337 + + I +DPPR+G++++ K+V+ PR I+YISCNP+TL NL Sbjct: 313 ------------KPDVIVLDPPRAGVNAKALEKIVEFSPREIVYISCNPKTLIDNLYFFE 360 Query: 338 -QTHKVERLALFDQFPYTHHMECGVLLTA 365 + ++ L FD F +T H+E LL+ Sbjct: 361 YNRYNIKSLKAFDNFFFTSHVEAVALLSK 389 >UniRef50_Q3K8E9 23S rRNA (uracil-5-)-methyltransferase rumA n=25 Tax=Pseudomonadaceae RepID=RUMA_PSEPF Length = 461 Score = 283 bits (724), Expect = 8e-75, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 144/367 (39%), Gaps = 30/367 (8%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHD--GDDLY 60 + QLA K L ++ + PE + +P+ YR RA + D L Sbjct: 103 QHLPHNEQLALKQRMLAEQLSRVAGAEPEEWAAPLTGPEFGYRRRARIAVRWDSKAKKLE 162 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 ++ + + P + + +MT + +R L ++ + S Sbjct: 163 VGFRAAGSQDIVAISECPVLVQPLQPIMTRLPEMLRRL-SKPQALGHVELFSGSS----- 216 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI 180 + + + + L+D + L G + D + L ++ Sbjct: 217 LAVLLRHMAPLSEADLTILKDFCAFHEAQLWLHGEGEPQPV-DDAQSLGYHLEQWDLQLA 275 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATE 239 YR F Q NA +N M+ AL+ K + +L+L+CG GNF+L LA+ V+A E Sbjct: 276 YR--PGDFIQVNAGVNEAMVAQALEWLKPTADERVLDLFCGLGNFALPLAKAAREVVAVE 333 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 299 + V A N A+N++ N + + + + + +D Sbjct: 334 GVQTMVDRAAANAASNNLHNTKFFQADLSQPLTD------------AEWIGNGFSAVLLD 381 Query: 300 PPRSGLDSETEKMVQ-AYPRILYISCNPETLCKN-LETLSQTHKVERLALFDQFPYTHHM 357 PPR G K+ R++Y+SCNP TL ++ +E + Q ++++R + D FP T H+ Sbjct: 382 PPRDGAFEVVRKLAALGAKRLVYVSCNPATLARDTVELIKQGYRLKRAGILDMFPQTAHV 441 Query: 358 ECGVLLT 364 E L Sbjct: 442 EAMALFE 448 >UniRef50_C7MM03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MM03_CRYCD Length = 543 Score = 283 bits (724), Expect = 8e-75, Method: Composition-based stats. Identities = 79/432 (18%), Positives = 149/432 (34%), Gaps = 94/432 (21%) Query: 9 EQYEAQLAEKVVRLQSMMAP----FSDLVPEVFRSPVSHYRMRAEFR------------I 52 E Y QL K + + A L P + +R + + Sbjct: 123 EPYAHQLKRKQYFIAELFADEIKAGCTLEPIIGMEDPFGFRNKIASPFAPVRSSRTGKRV 182 Query: 53 WHDGDD--------------------------------LYHIIFDQQTKSRIRVDSFPAA 80 H + + ++ T IR D P Sbjct: 183 RHTKSGDATLQQDTAARQRKTSVNSLSRSRSTSSAVSSMRYGLYAAGTHRLIRADKCPVE 242 Query: 81 SELINQLMTAMIAGVRNN-----------PVLRHKLFQIDYLTTLSNQAVVSLLYHKKLD 129 + +++ A +R +RH + ++ + S++ +V+L+ + K+ Sbjct: 243 HPIGRRVVAATAQLMRKWDIAPYDEDAGTGFMRHVIVRVGH---ESDEVLVTLVTNGKVF 299 Query: 130 DEWRQEAEALR-------DALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYR 182 + A L+ ++ N+ + ++ +I + L + +R Sbjct: 300 PSGKNFARHLKKHCPEITTVVQNVNMRSTNAIFGGEEQVLYGPGFILDTL----CGLSFR 355 Query: 183 QVENSFTQPNAAMNIQMLEWALDVTKGSKG----DLLELYCGNGNFSLALARNF--DRVL 236 +SF Q NA + AL++ + +L+ YCG G L A +V+ Sbjct: 356 ISSHSFYQVNAVQTEVLYRTALEMAACTSSHQALTILDAYCGTGTIGLVAASQVPNSQVI 415 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 + A S+ A+ N N I N + A +F + + + Sbjct: 416 GIDNASSSIRDARQNAVHNGIANATFLCEDATDFLLHRAAASD------------SIDVL 463 Query: 297 FVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQT-HKVERLALFDQFPY 353 +DPPR+G SE + A R++YISCNP T +++ ++ + + RL D FP+ Sbjct: 464 MMDPPRAGSTSEFIEAACALAPERVVYISCNPATQKRDVRLFARGGYHLVRLRAVDMFPH 523 Query: 354 THHMECGVLLTA 365 T H+E LL Sbjct: 524 TDHIETVALLMR 535 >UniRef50_B7CCQ1 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCQ1_9FIRM Length = 406 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 73/379 (19%), Positives = 146/379 (38%), Gaps = 46/379 (12%) Query: 14 QLAEKVVRLQSMMAPFSDLVPEVF----RSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTK 69 Q +K ++ ++ + L V +HYR + D +Y ++ + Sbjct: 22 QADKKKKDVEVLVEK-AHLKVRVGDVHMAKNDTHYRNKVIVGFAKDKGKVYSGLYASHSH 80 Query: 70 SRIRVDSFPAASELINQLMTA-----------MIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 ++ ++ +L+N+++ + +LRH L + + T ++ Sbjct: 81 RVVKTENCIMQPKLVNEIINKITELVGSMKLELYNERTGTGLLRHVLIRWGHKT---DEV 137 Query: 119 VVSLLYHKKLDDE-------WRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDER 171 +V + +K+ E ++ ++ N I + + I + Sbjct: 138 MVVFVTSQKMFPSRKNMVRVLTSEFPQIKTIVQNINPRKTSIVLQDEAIVLYGNGMIHDE 197 Query: 172 LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALAR 230 L + NSF Q ++ + A + + D +L+ YCG G L + Sbjct: 198 L----CGLDIAFSHNSFYQIHSEQCEVLYGLAKKMLDLKETDTVLDTYCGVGTIGLTMTD 253 Query: 231 NFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS 290 + +V+ E+ ++ A+YN N I N++ + M + EF + Sbjct: 254 SCKKVMGVEVNPDAIENAKYNAKQNKIKNIEFVAMDSTEFMRQARKYHN----------- 302 Query: 291 YQCETIFVDPPRSGLDSETEK--MVQAYPRILYISCNPETLCKNLETL-SQTHKVERLAL 347 + + I +DPPR+G + + +ILYISC+P T ++L Q + +L L Sbjct: 303 -RYDAIILDPPRAGTTKDFIECATALNPRKILYISCDPRTQVRDLNQFRKQGYVTNKLEL 361 Query: 348 FDQFPYTHHMECGVLLTAK 366 D FPYT H+E +L K Sbjct: 362 VDLFPYTDHIESVCVLEKK 380 >UniRef50_C4GHC6 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GHC6_9NEIS Length = 437 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 70/374 (18%), Positives = 141/374 (37%), Gaps = 28/374 (7%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP----VSHYRMRAEFRIWHDGDDLYH 61 + ++ AQ+A K + + + PE P HYR R + + Sbjct: 77 MQHVEFTAQVAMKQRVFEEQLQRIGKVQPESLLPPVYGTPWHYRSRTRLAVHTSANGKVV 136 Query: 62 IIFD-QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKL-FQIDYLTTLSNQAV 119 + + +++ + ++ E ++ + + +++ ++ K+ + ++ Sbjct: 137 LGYQAKRSHKIVGINQCLLLPEHVSGCLGIIHDALQDMVNVQPKVGIRSVEISVGEGVTA 196 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHL---IGRATKTKI-ELDQDYIDERLPVA 175 V+++ K+ + + + IG A + D + RLP Sbjct: 197 VNIVSQKRQPENVLCALSGCLNRGAGGKTVWQVWQQIGNAKPQAVSPHDAPPLVFRLPEF 256 Query: 176 GKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDR 234 G M ++ FTQ N +N M+ A+ + +L+CG GNF+L LA+ Sbjct: 257 GLTMPFQL--GDFTQINLPLNEIMVARAVRYLDPQPHERIADLFCGLGNFTLPLAKRAAE 314 Query: 235 VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 V+ E + A N AN + N Q F + + Sbjct: 315 VVGIEGSAALTQRAVANARANGLPNAQFASADL------------FAATPETLAALGRFD 362 Query: 295 TIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLS-QTHKVERLALFDQF 351 + +DPPR+G + + + RI+YISCNP TL ++ L+ + ++ + + F Sbjct: 363 KMLLDPPRAGAFAVVQALHAPYLPQRIVYISCNPATLARDAAVLASKGYRFATAGMMNLF 422 Query: 352 PYTHHMECGVLLTA 365 P T H+E + Sbjct: 423 PQTSHVEAIGVFER 436 >UniRef50_D1AXU5 RNA methyltransferase, TrmA family n=2 Tax=Fusobacteriaceae RepID=D1AXU5_STRM9 Length = 466 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 77/398 (19%), Positives = 155/398 (38%), Gaps = 57/398 (14%) Query: 6 LPTEQYEAQLAEKVVRLQSMM-----APFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 YE Q K + ++ + +P V YR + EF ++ D Sbjct: 85 FQYLSYEKQAELKANLVYKLIDNSIKNKNYEKLPIVTMGNDKEYRNKMEFSFGNEYKDGP 144 Query: 61 H--IIFDQQT-KSRIRVDSFPAASELINQLMT-----------AMIAGVRNNPVLRHKLF 106 + + + + V+ E +++ + + + LR+ + Sbjct: 145 IILGLHKKNSFHDIVNVNECRLMDENFRKIVRFTNDFFSKKDISFYHRLTHIGFLRNLVI 204 Query: 107 QIDYLTTLSNQAVVSLLYHKKLD-----DEWRQEA------EALRDALRAQNLNVHLIGR 155 + T V+++ +++ DE++++ L+ + N N R Sbjct: 205 RKGEKTKELG---VNIVTTSQIENYDIIDEYKEKLLCLDLSMGLKSIIHTINDNKSDSVR 261 Query: 156 ATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT-----KGS 210 A K I + I ERL ++ + SF Q N+ ++ + ++ Sbjct: 262 ADKEIILYGKRDITERL----FDLSFNVSPYSFFQTNSFGVEKLYQEVINNLLFITKNDE 317 Query: 211 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF 270 K + +L+ G G +++ V E+ + +V A N N I N + I Sbjct: 318 KPIVFDLFSGTGTIGQIVSKYSKEVYGIELIEEAVIKANENAIKNGITNAKFIAGDV--- 374 Query: 271 TQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPET 328 F +L+ D ++ + + + +DPPRSG+ +T + Y I+Y+SCNP+T Sbjct: 375 ---------FEKLREFDKENIKPDILILDPPRSGVGEKTILKLLEYNVNYIIYVSCNPKT 425 Query: 329 LCKNLETLS-QTHKVERLALFDQFPYTHHMECGVLLTA 365 L ++L+ ++ ++R+ D F YT H+EC VL+ Sbjct: 426 LAEDLKIFEYNSYILKRVVCVDMFGYTPHVECIVLIQR 463 >UniRef50_Q1K0F7 RNA methyltransferase, TrmA family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0F7_DESAC Length = 424 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 86/367 (23%), Positives = 140/367 (38%), Gaps = 27/367 (7%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVP-----EVFRSPVSHYRMRAEFRIWHDGDDLY 60 YE Q K + V YR R +F+ ++ Sbjct: 77 WQQLSYEQQCRWKQQIFVDSCVRHGRIDQGVIRDLVPAPQEFGYRSRVQFKCYNSPQGFI 136 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 + + + + I V P + I MTA + + V + QID + A+ Sbjct: 137 LGFYRRGSHNVIDVRHCPVIALPIAAQMTAWRT-LFDGSVYASGVSQIDVAVGSDD-ALR 194 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI 180 ++++++ E L L A + V L+ K L Q +D + V M Sbjct: 195 TIVHYR--GAETEAFCAWLAGCLDAVDGAV-LVQTGRKNPQILLQGQVDLAIRVDEPPME 251 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATE 239 F Q + N Q++ ++ + + D +L+LYCG GNFSL LAR V+ E Sbjct: 252 LHYGPGGFAQVHLEQNRQLVARVIEAAEVTAQDAVLDLYCGMGNFSLPLARRAGAVVGVE 311 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 299 PS++ A N + N + E F + I +D Sbjct: 312 DYAPSISYADRNRDTLGLTNATFHACSVETFLGRWRRT---------------ADVIVLD 356 Query: 300 PPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHME 358 PPRSG M++ RI+Y+SC+ +TL ++L L+Q++ V + D FP T H E Sbjct: 357 PPRSGAREAVAGMMRCRPRRIVYVSCDQQTLMRDLTALAQSYTVTSIQALDMFPQTCHTE 416 Query: 359 CGVLLTA 365 +L Sbjct: 417 VLAVLDR 423 >UniRef50_D2MNG0 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Bulleidia extructa W1219 RepID=D2MNG0_9FIRM Length = 436 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 147/384 (38%), Gaps = 41/384 (10%) Query: 4 EHLPT----EQYEAQLAEKVVRLQSMMAPFSDLV-----PEVFRSPVSHYRMRAEFRIWH 54 E L +YE QL K+ L + ++ + YR + + I Sbjct: 69 EQLGHPFFGIEYEKQLTFKLDLLTEALWKYAKVKRHWVRKINPSENEFSYRNQCKLPIQE 128 Query: 55 DGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV----------LRHK 104 L +F + V F + ++ ++A + + LR+ Sbjct: 129 RQGKLVCGLFSPNSNQFQVVHHFLTHDPEVERIRKELLAILNQHHFPAYSHKTKQGLRYI 188 Query: 105 LFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVH-LIGRATKTKIEL 163 + + + + + +K L D++++ L ++ N + L +TK+ Sbjct: 189 VIRCIHGISQATLITGKDTLNKCLIDDFKK-IPHLHSLHQSWNTSKQSLQFFGERTKLLF 247 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGN 223 + + L + + +F Q N + +A+ L+E YCG G Sbjct: 248 GKKH----LLIPFSSIYLHVSPEAFFQLNTKQAEALYHYAVSKVDPCH-ILVEAYCGIGV 302 Query: 224 FSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRL 283 SL + ++V E+ ++ A+ N NH+DN A + + Sbjct: 303 MSLLASSKAEQVYGIELNPHAIQDAKRNAELNHLDNCHFECADAADGLYKIA-------- 354 Query: 284 QGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQTHK 341 K + +T+ +DPPRSGLD + + RI+YISCNP TL KN+ L ++ Sbjct: 355 -----KKQKIDTLLIDPPRSGLDEAMLEAILKSQPDRIIYISCNPATLAKNIAVLKWKYQ 409 Query: 342 VERLALFDQFPYTHHMECGVLLTA 365 + + FD FP T H+EC LL+ Sbjct: 410 ILTIQAFDLFPQTPHVECLCLLSK 433 >UniRef50_Q1MQU7 Similar to RNA methyltransferase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQU7_LAWIP Length = 470 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 151/386 (39%), Gaps = 40/386 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV----PEVFRSP-VSHYRMRAEFRIWHDG--DD 58 QY+ Q+ K +Q + + +V SP YR + F Sbjct: 90 WQHIQYKHQIIWKKQIIQDALERIGKVNNPVILDVIPSPCEWRYRNKMVFAFAPSPCLST 149 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNN------PVLRHKLFQ-IDYL 111 + + + I V S+ +++ + VR+ +L K F+ + Sbjct: 150 VLLGLKRVDSHEVIPVTDCLLQSKNTMKIVEIVRHWVRHEQTSLEKKILTLKYFRFLIIR 209 Query: 112 TTLSNQAVVSLLYHKK---LDDEWRQEA--EALRDALRAQNLNVHLIGRATKTK--IELD 164 T++ +V L+ +KK +++++ ++A + L L+ +I I Sbjct: 210 ETITGDILVELIVNKKNTLIENKFDEQALGKRLAQCLKGVEAIKGIILSRRTQVSDIAYS 269 Query: 165 QDYIDER----LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYC 219 + I L +++ + ++F Q N + L + + + + + +LY Sbjct: 270 EYIIWHEGERFLEEQVGDIVLSRGNDNFFQINTKATEILYSKILSMAQLTGKELVWDLYT 329 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G+ +L LA +V+ E S+ A N + N I+ A F ++ Sbjct: 330 GVGSIALFLAPFSLKVIGVESIAASINLANKNRLSLGYTNCSFIQDDAFSFIRS------ 383 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLS 337 K + + VDPPR+GLD + +++ A R +Y+SCNP T +++ LS Sbjct: 384 ------QIQKGITPDIVIVDPPRAGLDKKVIELLIRLAPRRCIYVSCNPGTFARDIAMLS 437 Query: 338 QTHKVERLALFDQFPYTHHMECGVLL 363 +++ D FP+T H+E L Sbjct: 438 PHFVIQQTQPVDLFPHTPHVETVSYL 463 >UniRef50_C8W8Q1 RNA methyltransferase, TrmA family n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W8Q1_ATOPD Length = 415 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 73/412 (17%), Positives = 135/412 (32%), Gaps = 75/412 (18%) Query: 9 EQYEAQLAEKVVRLQSMMAPFS-----DLVPEVFRSPVSHYRMRAEFRIW-HDGDDLYHI 62 Y QL K +++ ++AP + + P YR +A G + Sbjct: 22 VPYPIQLKRKQAQVEELLAPLASINNVTIEPIRGMDEPLAYRHKAATPFAPGKGRTVRSG 81 Query: 63 IFDQQTKSRIRVDSFPAASELINQLMTAM-----------IAGVRNNPVLRHKLFQIDYL 111 + T I ++ + R LRH + + Y Sbjct: 82 FYASGTHQIIASKECLVEDGRARAILNDVAYLAGQFNIHAYQEDRGKGALRHAVVRCGYA 141 Query: 112 TTLSNQAVVSLLYHKKLDDEWRQEAEALR-------DALRAQNLNVHLIGRATKTKIELD 164 T + ++ L+ + + ++ ALR N +T++ Sbjct: 142 T---DDVMLVLVVNGQRLPHEQEFIAALRKAHPELTSIFLNVNQKRTNAILGRETRLLWG 198 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG------------ 212 + ++L + SF Q N + + A+D Sbjct: 199 STSMSDKL----LNCTFEIGPTSFYQTNPQQTEALYQLAIDGALAGSKQTGATLTEASTQ 254 Query: 213 ----------DLLELYCGNGNFSLALARNFDR------VLATEIAKPSVAAAQYNIAANH 256 +L+ YCG G L LA + + + + ++ A+ N N Sbjct: 255 TDASAPANNLRILDAYCGTGTIGLCLAHVAEAQGVNLLLTGVDQVENNIQMARRNARNNK 314 Query: 257 IDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY 316 ++ + I A + QA+ + I +DPPR+G K Sbjct: 315 LE-AEFICDDATRYMQAL------------AKDGQNFDVIILDPPRAGSTPAFLKATAQL 361 Query: 317 --PRILYISCNPETLCKNLE-TLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 +I+Y+SCN T ++L+ L +ER+ D FP+T H+EC V+L+ Sbjct: 362 AQKKIVYVSCNVVTQARDLKVLLDSGFAIERVTPVDMFPHTKHVECVVVLSR 413 >UniRef50_C4LBR5 RNA methyltransferase, TrmA family n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBR5_TOLAT Length = 440 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 67/368 (18%), Positives = 138/368 (37%), Gaps = 28/368 (7%) Query: 7 PTEQYEAQLAEKVVRLQSMMAPFSDLVPE----VFRSPVSHYRMRAEFRIWHDGDDL--Y 60 Q K +Q + + + + S YR + +D + Sbjct: 93 QMMPQAMQCQAKQQGVQRLFRQLAKIDLPAPLWIESSAPQAYRRVCRLAVKYDKNKRCVL 152 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 +Q+++ + ++S P + ++ L+ + + R + I+ T S A++ Sbjct: 153 VGFRQKQSQALVEINSCPVLTAALSALIVPLRTLINELSSARD-VGHIELYETESGLAML 211 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI 180 L ++ + ++ E L + ++L + + + + Sbjct: 212 -LRHNGRPP---VKDKELLLAFALQHDCALYLQTTGYPEPLADVKPSFYQ-----LDGLR 262 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATE 239 F Q N +N +++ + + + D +L+L+CG GNF+L LAR V E Sbjct: 263 LYFQPGDFLQVNPQVNQRLVNYVREWLAPTATDNVLDLFCGIGNFTLPLAREAASVTGIE 322 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 299 V A +N N + N R + + N + + + +D Sbjct: 323 GVDEMVQRATHNAEQNQLVNTGFHRADLTKMAEYANAG----------WQQQCYDLVLLD 372 Query: 300 PPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHME 358 P R+G ++ + + RI+Y+SCNP T ++ L + +++ L D FP+T H+E Sbjct: 373 PGRTGAEAVMPWLAKSGARRIVYVSCNPVTAARDCALLQPGYTLKQWGLLDMFPHTGHVE 432 Query: 359 CGVLLTAK 366 L K Sbjct: 433 SLFLFERK 440 >UniRef50_C4XJA3 23S rRNA (Uracil-5-)-methyltransferase n=2 Tax=Desulfovibrio RepID=C4XJA3_DESMR Length = 450 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 73/387 (18%), Positives = 141/387 (36%), Gaps = 47/387 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 Y AQL K ++ +A + V V YR + EF L+ Sbjct: 84 WQRLDYPAQLFWKREQVAETLARLGGLPDVPVADTVASPEVYGYRNKMEFAF---AGRLH 140 Query: 61 HIIFDQQTK-SRIRVDSFPAASELINQLMTAMIAGVRNNPVLRH------KLFQIDYL-- 111 + +++ + +D+ P + +++ A+ R + + +++ L Sbjct: 141 LGLRERRNPARVLDIDTCPLMAPWAGEVVNAVRELCRETGLAAYDPRTGKGVWRHLVLRD 200 Query: 112 TTLSNQAVVSLLYH---------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIE 162 + + ++ L L + + + + I Sbjct: 201 SRHDGSRLAHIITGPSRAAGDAVHTLGKTLLARFPELTGFVHSVRRAPTPVAHGERQSIV 260 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWA-LDVTKGSKGDLLELYCGN 221 L + ++ E++ A R + ++F Q N + E + + G L+LYCG+ Sbjct: 261 LGRGHLTEKMGQA----TLRVLPDAFAQTNTGAAQSLYEIVTREASSDPAGTALDLYCGS 316 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN 281 G +L LA F V +I S+ +A+ + + N Sbjct: 317 GGLALNLAPAFAEVRGLDIDPRSIESAKASAKLSEAHNCVF--------------EAADA 362 Query: 282 RLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQT 339 DL + +DPPR+G E + A R++Y+SCNP TL ++L+ L++ Sbjct: 363 ADALDDLAGDPPTVVVLDPPRAGAAPEVIAAILRTAPGRVVYVSCNPATLARDLKRLAEA 422 Query: 340 HKVERLALFDQFPYTHHMECGVLLTAK 366 + V + D FP+T H+E LT + Sbjct: 423 YDVTSVTPVDLFPHTAHIEAVASLTLR 449 >UniRef50_A9BGS6 RNA methyltransferase, TrmA family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGS6_PETMO Length = 446 Score = 281 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 71/389 (18%), Positives = 155/389 (39%), Gaps = 51/389 (13%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVP-----EVFRSPVSHYRMRAEFRIWHDGDDL 59 Y++QL K ++ + L + + YR R E+ + + L Sbjct: 80 QWLDYDYKSQLKSKTEIVKEQLERIGKLDSSVVNDIIESDLIWGYRNRMEYTF-QENNKL 138 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQI 108 + + + + + S P + L + + V +L+H + + Sbjct: 139 KLGLNIANSNNVLDIYSCPISPNLFDNIRNKFRELVNKLNIEIYDKKTKKGILKHLVIRR 198 Query: 109 DYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI------E 162 + NQ +V ++ + + + + + +L +HL+ + + Sbjct: 199 SF---SKNQTMVIIVTNTEYLPYEEEIKQFFQQNFHPYSL-IHLMNSSDSVVLRGPYKTL 254 Query: 163 LDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD---LLELYC 219 L + ++E + ++ SF Q N + ++L L+ K + +L+LY Sbjct: 255 LGEGVLNEEF----DDFKFQIPPTSFFQNNYNVTQKLLRHILEYFKSNAQKDATMLDLYS 310 Query: 220 GNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 279 G G FS+ + F + + E +K SV AA N N NV I + Sbjct: 311 GVGLFSIYFSPLFKHIESVETSKVSVKAAIANSHINFTKNVNFILAS------------- 357 Query: 280 FNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPR--ILYISCNPETLCKNLETLS 337 ++ + S + + + +DPPR GL+ + +++ + + I+Y+SC+P T ++L + Sbjct: 358 -SKPYLMKNSSKRFDYVILDPPRKGLEKKEIQLLSSMAKKGIIYVSCDPSTFARDLNLFT 416 Query: 338 Q-THKVERLALFDQFPYTHHMECGVLLTA 365 + ++ + FD FP+++H+E +L Sbjct: 417 KNGFTLKSVQPFDMFPHSYHIENVGILEK 445 >UniRef50_Q9X0H9 Uncharacterized RNA methyltransferase TM_1094 n=9 Tax=Thermotogaceae RepID=Y1094_THEMA Length = 439 Score = 281 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 152/386 (39%), Gaps = 52/386 (13%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV----FRSPVSHYRMRAEFRIWHDGDDLY 60 H +YE QL K L + S+L EV V HYR + EF Sbjct: 78 HWMDVKYETQLRYKKEVLIDLFER-SNLKVEVEDVEPSDLVFHYRTKMEFHFQGRK---- 132 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQID 109 + + + I + A E +++ + V+ VL+H + + Sbjct: 133 LGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNVPVYNWETRKGVLKHLVIRYA 192 Query: 110 YLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI------EL 163 + T +Q +V + + R A+ + +H++ + Sbjct: 193 FST---DQFMVIFVTKTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPYKTLY 249 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWA-LDVTKGSKGDLLELYCGNG 222 + I E ++ +F Q N ++ ++++ + +L+LY G G Sbjct: 250 GEGVIVEEFDWE----RFQIPPTAFFQSNYSITSKLIDHVYREQALQGNEVVLDLYAGIG 305 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 FS+ + + RV++ E ++ +V A + N N N++ + +F + +G Sbjct: 306 TFSVRTSFSAARVISVESSRVAVKAGKANANINSRKNIEYVEQDVLDFLKNYSG------ 359 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETL-SQT 339 + + I +DPPRSG E K + + RI+Y+SC+P TL ++L+ L Sbjct: 360 ---------RADRIILDPPRSGAGPEVMKEIARLSPERIVYVSCDPSTLVRDLKVLVENG 410 Query: 340 HKVERLALFDQFPYTHHMECGVLLTA 365 + + R+ FD FP T+H+E V L Sbjct: 411 YSIVRVKPFDMFPQTYHVETAVTLVK 436 >UniRef50_A8RCG8 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCG8_9FIRM Length = 542 Score = 281 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 76/380 (20%), Positives = 142/380 (37%), Gaps = 35/380 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVP-----EVFRSPVSHYRMRAEFRIWHDGDDL 59 L +Y AQL K L+ + ++ + P + + YR + + + + + Sbjct: 75 PLMIAKYPAQLQYKRSLLKQSLIKYAQVDPRKVEKVIGSEEIFGYRNQCKLPVSLNKEGQ 134 Query: 60 YH-IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRH-----KLFQIDYLTT 113 + + + + ++ +I ++ + + + + Sbjct: 135 LCSGFYLPNSNIFTEMKKCIVHDRGVERIRHEVIEVLKRFGIQPYNHHTKSGIRSLVVRG 194 Query: 114 LSNQAVVSLLY-HKKLDDEWRQEAEALRD----ALRAQNLNVHLIGRATKTKIELDQDYI 168 + +L+ H +L ++ +R + + + Sbjct: 195 FDGKYQCTLVTGHDELSCSLIEDILHIRGMYSLWQSIHTVKNTAEVFGKQMVHLGGEK-- 252 Query: 169 DERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLAL 228 +LP + SF Q N A + + + KG K ++E Y G G SL L Sbjct: 253 --QLPFHFDGLDLEVSPRSFFQLNTAQAKVLYQTIASLVKGHKKRIVEAYSGIGAISLYL 310 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 D ++ E K +V A N NH ++V+ + A ++ +E Sbjct: 311 RDKADEIIGIETIKDAVVNANQNAKRNHCEHVRFLCDDAASKLTYLSKNKEI-------- 362 Query: 289 KSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTHKVERLA 346 + + VDPPRSGLD + + I+Y+SCNP TL KNL L + ++V+R+ Sbjct: 363 -----DVLVVDPPRSGLDDAMLECLLRSKIKEIIYVSCNPATLGKNLAVLQEKYRVQRVI 417 Query: 347 LFDQFPYTHHMECGVLLTAK 366 D FP T H+E VLL+ K Sbjct: 418 PIDMFPNTQHVETVVLLSHK 437 >UniRef50_D0SQB6 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Acinetobacter junii SH205 RepID=D0SQB6_ACIJU Length = 469 Score = 281 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 79/374 (21%), Positives = 152/374 (40%), Gaps = 31/374 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSH----YRMRAEFRIWH--DGDDL 59 L + Q+ K L+S + F+ L PE + +P+ YR RA + + + L Sbjct: 101 LQHIHPDQQIVLKQNVLKSHLEHFAGLQPEEWLAPIRSVKTDYRRRARIGVRYIPKQNRL 160 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + + + ++++ + + + + I ++ Sbjct: 161 VMGFREHHSNHLTDIQQCKVLDQVLSDSLVELKTLLESL----TGKAHIGHIELAMGDDE 216 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 VSLL + LD+ + LR + ++ + + +D ++ RL + ++ Sbjct: 217 VSLLI-RHLDELNVSDVNQLRQFTLLKGWQLYFQSKGIDSLHRVDDEHAPMRLHYSLEDF 275 Query: 180 I--YRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFD--- 233 + FTQ N+ +N +M++ A ++ +G +L+L+CG GNFSL LAR Sbjct: 276 KVKFAFSPLDFTQVNSHVNARMVQLACELLDLKEGERVLDLFCGLGNFSLPLARCVGETG 335 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 RV+ E + V A N AN++ + Sbjct: 336 RVIGVEASDEMVERATENAQANYLTQASFFSQDLTK------------DFSHHSWAKQGF 383 Query: 294 ETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQF 351 + + +DPPRSG + + RI+Y+SCNP TL ++ L+Q +++++ A+ D F Sbjct: 384 DALLIDPPRSGAYEVMQYVPNFGAKRIVYVSCNPSTLARDAGVLAQYGYQLKKAAVMDMF 443 Query: 352 PYTHHMECGVLLTA 365 +T H+E L Sbjct: 444 THTEHVESIALFEK 457 >UniRef50_Q72VP7 Uncharacterized RNA methyltransferase LIC_10249 n=4 Tax=Leptospira RepID=Y249_LEPIC Length = 393 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 79/394 (20%), Positives = 148/394 (37%), Gaps = 58/394 (14%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVP--EVFRSPVSHYRMRAEFRIWHDGDD----LYH 61 YE QL K ++ F L + YR + + H L Sbjct: 22 HIGYEKQLQHKQEEIEKRFKGFKGLEIRQIIKSPKDQMYRHKVQLPFGHRKIGKKSVLTL 81 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-----------NPVLRHKLFQIDY 110 + +++ I E + + A+ RN + +LRH + + Sbjct: 82 GLHNKENTFIIDQKECRIQDEDLTTVAAAIRHWARNENLEPYHEKKGSGLLRHIVLR--- 138 Query: 111 LTTLSNQAVVSLLYH-------KKLDDEWRQEAEAL----------RDALRAQNLNVHLI 153 + + +V ++ + KKL D + L+ N + Sbjct: 139 KANATQEILVGIVTNESEIPGRKKLTDRLYSYIQQFLYKENSKADVVGILQNVNRKNTKV 198 Query: 154 GRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD 213 K + ++ E++ ++ ++ ++F Q N + L+ Sbjct: 199 VLGEKEVTWYGRHFVKEKI----GKLDFQIGLSTFFQVNPFQIENLYNLILEDL-PENKC 253 Query: 214 LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 273 +++ YCG G SL +A +V+ E S+ +A AN I+NV I+ + +A Sbjct: 254 VVDAYCGIGTISLYIASKSKKVIGLEENSSSIRSAIGASKANGIENVHFIKGKVLDTLRA 313 Query: 274 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCK 331 + + +DPPR GLD+ET+ ++ +ILY+SCNPETL + Sbjct: 314 ALNENS--------------DVVVLDPPREGLDAETKSILLNSKVNQILYVSCNPETLLR 359 Query: 332 NLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365 + L+++ K E++ D FP+T H+E + T Sbjct: 360 DAIELTKSFKYEKITPVDLFPHTSHLESVSVFTK 393 >UniRef50_Q0BEW2 23S rRNA (uracil-5-)-methyltransferase rumA n=12 Tax=Burkholderia cepacia complex RepID=RUMA_BURCM Length = 465 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 73/378 (19%), Positives = 137/378 (36%), Gaps = 35/378 (9%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH--DGDDL 59 + AQ+A K L+ + + L E +P+ YR RA + + + Sbjct: 104 MQHLDMRAQVAIKQRVLEDNLWHLAKLRAETVFAPIHGPSWGYRYRARLTVRNVAKKGGV 163 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 ++++ + S ++ ++ + V + R ++ QI+ Sbjct: 164 LVGFHEKKSSYVADMTSCEVLPPHVSAMLVPLRRLVEGLSI-RDRMPQIELAVGS----Q 218 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 V+ L + L+ + LR + L + T + + + Sbjct: 219 VTALVLRVLEPINADDEALLRAFADEHKVQFWLQPKGPDTVTPFYPLDVPLDYTLPEFGI 278 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLAT 238 FTQ N +N ++ AL + S+ D +L+L+CG GNF+L LAR V+ Sbjct: 279 RMPFKPTDFTQVNHQINRVLVGRALRLLAPSRDDRVLDLFCGIGNFTLPLARLSREVMGI 338 Query: 239 EIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 E + A N N +D + E T + Sbjct: 339 EGSDTLTTRALANARENGVDGHTTFACRNLFEVTGDDLRA------------LGAFDKFL 386 Query: 298 VDPPRSGLDSETEKMVQ--------AYPRILYISCNPETLCKNLETL--SQTHKVERLAL 347 +DPPR G + ++ + + RI+Y+SCNP TL ++ L ++++ + Sbjct: 387 IDPPREGALAVSKALAEIAQSGEGPLPKRIVYVSCNPSTLARDAGLLVHEAGYRLKGAGV 446 Query: 348 FDQFPYTHHMECGVLLTA 365 + FP T H+E L Sbjct: 447 VNMFPNTSHVESIALFER 464 >UniRef50_D2U9R4 Probable 23s rrna (Uracil-5-)-methyltransferase protein n=1 Tax=Xanthomonas albilineans RepID=D2U9R4_XANAL Length = 467 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 80/372 (21%), Positives = 145/372 (38%), Gaps = 31/372 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH-DGDDLY 60 L + Q+ K L + + P+V + YR + F + + D Sbjct: 115 LQHLAEDQQILAKQQVLTDNLERIGHVTPQVVLPALSGASWGYRRKGRFSVRRVEKKDKT 174 Query: 61 HIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + F +Q + + + + A+ V R QI+++ + A+ Sbjct: 175 LVGFREQDPRFVADLSVCHTVIPQVGLKVAALAELVERLDAKRDI-PQIEFIAGDATVAL 233 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIEL--DQDYIDERLPVAGK 177 + + + +AL +A + + L + L + RLP Sbjct: 234 ----TFRHMQPLSEHDQDALIAFAQAHDFAIFLQPAGVDSVHPLYPQAAPLSFRLPQWDV 289 Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVL 236 E+ +R F Q NA +N QM+ AL + GD +L+L+CG GNF+L LAR V+ Sbjct: 290 ELAFR--PLDFIQVNAVLNQQMIAHALALLDAQSGDRVLDLFCGLGNFTLPLARTVREVV 347 Query: 237 ATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETI 296 E V A+ N N +DN Q + + + + Sbjct: 348 GVEGDAGLVTRARENAQRNGLDNAQFFAADLTQ------------DQRQAPWMRQGFDKL 395 Query: 297 FVDPPRSGLDSETEKM-VQAYPRILYISCNPETLCKNLETL--SQTHKVERLALFDQFPY 353 +DPPRSG +++ ++ + RI+Y+SC+P +L ++ L +Q ++ D FP+ Sbjct: 396 LLDPPRSGALEVLQQLPLKQFQRIVYVSCHPGSLARDASYLVNTQGFVLKAAGAMDMFPH 455 Query: 354 THHMECGVLLTA 365 T H+E + Sbjct: 456 TAHVESIAVFER 467 >UniRef50_Q2BHH5 23S rRNA (Uracil-5-)-methyltransferase n=1 Tax=Neptuniibacter caesariensis RepID=Q2BHH5_9GAMM Length = 449 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 78/370 (21%), Positives = 140/370 (37%), Gaps = 31/370 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSH----YRMRAEFRIWH--DGDDL 59 L ++ Q+ K + + PE P+S YR I Sbjct: 101 LQHLEHSEQIKAKESLVLDQLQRLGKFNPESTTPPLSGSDQEYRRSCRIGINQLMRDGTP 160 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + + ++VD+ P IN+++ + A + + L+ Q Sbjct: 161 IIGFRRRGSSKLLQVDNCPILINPINKILGKLKAVLSEADSCKEITH--AELSMGDQQGA 218 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDY-IDERLPVAGKE 178 ++L K L + + L + + L + + + +L + + Sbjct: 219 MTLRIKKPLPESLSSSLQKLAE-----DNEFRLYFDNGQQINAFGDEADLSYQLEKSETQ 273 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDRVLA 237 + ++ F Q NA++N QM+ A+D +L+L+ G GNFSL LA V+ Sbjct: 274 IGFK--PGDFIQVNASVNTQMINRAMDWLDLKDNDRVLDLFSGVGNFSLPLATKAGSVIG 331 Query: 238 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 E + V AQ N ++N + R + +A+ I Sbjct: 332 VEGVEDMVQRAQNNAKQAGLNNCEFYRADLSKDLKAL------------PWYKQGFSKIL 379 Query: 298 VDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTH 355 +DPPR+G +++ Q +ILY+SCNP L ++ L Q +K + + D FP+T Sbjct: 380 IDPPRTGALEVIKQLEQHQCDQILYVSCNPSALARDGAELIRQGYKASKFCVMDMFPHTS 439 Query: 356 HMECGVLLTA 365 H+E VL Sbjct: 440 HVESLVLFEK 449 >UniRef50_D0J1B5 RNA methyltransferase, TrmA family n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J1B5_COMTE Length = 519 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 71/402 (17%), Positives = 146/402 (36%), Gaps = 51/402 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH--DGDDL 59 + AQ+A K L+ + + + PE P+ YR R+ + + + Sbjct: 126 MQHLHVAAQVAIKQRVLEDNLWHLAKVKPETLLRPIEGPAWGYRFRSRLSVRYVAKKGKV 185 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 +++++ ++ ++ ++ M A + + R QI+ Sbjct: 186 LVGFHERKSRYIADMEVCKILPPHVDAMLMPMRALIASMDA-RETCPQIEVACGD----H 240 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 V+ L + L+ + + LRD QN+ L + T +++ + + Sbjct: 241 VTALVLRHLEPLSDADKQRLRDFAAEQNVQWWLQPKGPDTVHLMEEGGTQLSYGLPDFGI 300 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLAT 238 FTQ N +N ++ +L + K +++ +CG GNF+L +A VL Sbjct: 301 TMPFKPTDFTQVNPHINRVLVTRSLRLLDAKKDERVIDWFCGLGNFTLPIATMAREVLGI 360 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E ++ V + N AAN++ + + + + F + + + V Sbjct: 361 EGSETLVKRSHENYAANNVTRSE----DDKLASTSFVARNLFEMTPAMLIADGNSDKWLV 416 Query: 299 DPPRSGLDSETEKMV---------------------------------QAYPRILYISCN 325 DPPR G + ++ + Q RI+Y+SCN Sbjct: 417 DPPREGAFALSKALADIHQIRIGAKQTGVASEEQPDLLPPLPEGQESWQFPKRIVYVSCN 476 Query: 326 PETLCKNLETL--SQTHKVERLALFDQFPYTHHMECGVLLTA 365 P TL ++ L ++ + + FP+T H+E + Sbjct: 477 PATLARDAGLLVHQAGYRCVAAGVVNMFPHTAHVESMAVFER 518 >UniRef50_Q7U6V8 Uncharacterized RNA methyltransferase SYNW1228 n=14 Tax=Cyanobacteria RepID=Y1228_SYNPX Length = 465 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 72/390 (18%), Positives = 140/390 (35%), Gaps = 52/390 (13%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV----PEVFRSPVSHYRMRAEFRIWH-DGDDLY 60 L + AQ K +L M + P + YR R + + D L Sbjct: 95 LQHLEESAQRNWKQNQLHQTMLRLGGIDHPQAPALTDQRGLGYRNRGLIPLRRGEDDRLR 154 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-----------LRHKLFQID 109 F + + + + P ++ L+ + + + + LRH +I Sbjct: 155 MGYFRRGSHRIVNLSRCPVLDPRLDALVEPLKQDLDTSGLSADHDLSHSQGLRHLGLRIG 214 Query: 110 YLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGR------ATKTKIEL 163 + T + +++++ ++L R + + + + ++L R T + Sbjct: 215 HHT---GEVLITVVSSQQLPALQRLAQQWIERWDPVKGVTLNLQPRRTNQILGATTTVLA 271 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK--GDLLELYCGN 221 I E + + +F Q N +++ + ++ G +++ YCG Sbjct: 272 GAPTIRE----LFCGLQLQLSTTTFFQINTPQAERIVACIVSWLSQAELAGPIVDAYCGI 327 Query: 222 GNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREF 280 G SL LA V+ EI S+ A+ N AN + + + Sbjct: 328 GTISLPLAAQGHHVVGLEINPDSIDQARSNADANGLGARTEFQAGDVANLLK-------- 379 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPR--ILYISCNPETLCKNLETL-- 336 C + VDPPR GL+S + + + P + Y+SC+ T ++L+ L Sbjct: 380 -------ETLATCSALVVDPPRRGLESSVIEAILSDPPGLLAYLSCDMATQARDLKRLLQ 432 Query: 337 -SQTHKVERLALFDQFPYTHHMECGVLLTA 365 +++E+L D FP T H+E L Sbjct: 433 PEGPYRLEQLQPVDFFPQTTHLENLAFLRR 462 >UniRef50_Q74N58 Uncharacterized RNA methyltransferase NEQ053 n=1 Tax=Nanoarchaeum equitans RepID=Y053_NANEQ Length = 447 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 75/376 (19%), Positives = 155/376 (41%), Gaps = 53/376 (14%) Query: 9 EQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS-HYRMRAEFRIWHDGDDLYHIIFDQQ 67 Y+ QL K ++++ ++ SP + +YR R ++ I++ + Sbjct: 101 MDYQYQLEFKKKVIENLF----GYDKDIIPSPKTIYYRNRMDYPIYNKVSLKEPGKWYGY 156 Query: 68 TKSRIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDYLTTLSN 116 I + S+ ++ + ++ LR+ + + T Sbjct: 157 ----IPIKECKMLSKEAEIIINEFNKFIEKYKIPSWDTVKHTGFLRYLVIREGKFTKERM 212 Query: 117 QAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHL----IGRATKTKIELDQDYIDERL 172 +++ Y +K +E E ++D + + + + + K ++ ER+ Sbjct: 213 IHIIT--YKRKKFEELWDFIENIKDLVTSVYWGIREDLGDVSISEKLYHYYGSKFLRERI 270 Query: 173 PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARN 231 ++ Y NSF Q N+ + +++ + + S+ D+ L+LY G G FSL +A Sbjct: 271 ----LDIEYYISPNSFFQTNSYQAVNLVKIVKEFLEPSENDVVLDLYSGVGLFSLQIANE 326 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY 291 +V+ EI + +V A+ N + N+ID + I E+ Sbjct: 327 VKKVIGIEIVEEAVEMAKLNASINNID-AEFIASPVEK------------------APII 367 Query: 292 QCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQTHKVERLALFD 349 + I VDPPR+GL ++ + ++ I+Y+SCNP T +++ L + +K+ + D Sbjct: 368 KANKIIVDPPRAGLTNKAIEYIEKINPDTIVYVSCNPYTQKRDINKL-KGYKIIDMQPLD 426 Query: 350 QFPYTHHMECGVLLTA 365 FP T H+E +L+ Sbjct: 427 MFPNTPHIENVILMKK 442 >UniRef50_C3XVW9 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XVW9_BRAFL Length = 650 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 74/429 (17%), Positives = 147/429 (34%), Gaps = 83/429 (19%) Query: 5 HLPTEQYEAQLAEK---VVRLQSMMAPF-----------------------SDLVPEVFR 38 L YE QL +K + ++ L Sbjct: 233 PLWNVPYEEQLKQKTESQKVVLGKLSRAIENVNPGLGSWVVQQRKQYDNMCCKLEDITPS 292 Query: 39 SPVSHYRMRAEF--RIWHDGDDLYHII----FDQQTKSRIRVDSFPAASELINQLMTAMI 92 +++YR + EF I +G + + + + + P + ++ Sbjct: 293 PILNNYRNKNEFNIGISPEGKEKTIGFRLGRYKGGSCTVVSPYDCPNLPDTAKDMVRIFQ 352 Query: 93 AGVRNNPVLRHKL-------FQIDYLTTLSNQAVVSLLYHKKL--DDEWRQEAEALRDAL 143 + + + Q+ TT ++ +V + ++ + ++E +E + L+D Sbjct: 353 TYLEQSTRSGYDTEKHQGHWKQLTVRTTQGSEVMVMVQFNVQDLSEEEIEKEKQLLKDYF 412 Query: 144 RAQ----------NLNVHLIGRATKTK----IELDQDYIDERLPVAGKEMIYRQVENSFT 189 H R + + L ++ I E+L M +R ++F Sbjct: 413 STGPGKDCGITSLFFQAHKQRRPGDEEASYQLLLGKEVIQEKL----LGMTFRISPDAFF 468 Query: 190 QPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAA 248 Q N + D +K +L++ CG G L LA++ +V+ E+ + +V A Sbjct: 469 QVNTLAAEVLYSKVADWCDFTKDSTVLDVCCGTGTIGLTLAKHVKKVIGVELCQQAVEDA 528 Query: 249 QYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSE 308 + N N IDN + + AE+ + L VDPPR+GL + Sbjct: 529 KVNANINGIDNAEFLCGKAEDILPDLVRRLYGTDL-----------VAVVDPPRAGLHTR 577 Query: 309 TEKMVQAYP---RILYISCNPETLCKNLETLSQT---------HKVERLALFDQFPYTHH 356 +++ +++Y+SCN ++ N L + + R D FP+T H Sbjct: 578 VISVLRKCSNLTKLVYVSCNSQSAMPNFIDLCRPTSNKFKGAAFRPVRAVPVDLFPHTRH 637 Query: 357 MECGVLLTA 365 E + Sbjct: 638 SELIIQFDR 646 >UniRef50_B3PNA0 tRNA (Uracil-5-)-methyltransferase related enzyme n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PNA0_MYCA5 Length = 449 Score = 277 bits (710), Expect = 4e-73, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 152/380 (40%), Gaps = 37/380 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAP---FSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYH 61 L YE QLA K + + F ++ +YR + + G Sbjct: 85 PLMILSYEDQLAFKQKIVNDLFLRELNFRNVKEITPSPLEINYRNKLRVHVECQGTTFKM 144 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAM------IAGVRNNPVLRHKLFQIDY-LTTL 114 + + + + S+ A + I ++ + + +N + ++K+ I + Sbjct: 145 GFYVKNSHILVEQTSYDLAYKEIGNILEEIDFLCKKEVLLEDNFIKKNKITSITVKYSEK 204 Query: 115 SNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIE-----LDQDYID 169 + ++ V K+ + L + N+ V ++ KTKI ++ I+ Sbjct: 205 TGESQVIFESLKQ-APFPASFIKRLIEKFDNLNI-VQIVCNEEKTKILKLIVLAGKESIE 262 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLAL 228 ++ ++ + SF Q N +M + L + + +++ + G G + L Sbjct: 263 YKI----DKLKFNVSSQSFYQVNEKQTNKMYKTLLKSLNLTGSEFIVDAFAGVGTIGMYL 318 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 A+ +V+ EI+K + + N N ++N++ I F R Sbjct: 319 AKKAKQVVCVEISKKATLNGKENAKLNSLNNLEFISEDCNRFFDKECTRR---------- 368 Query: 289 KSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLS-QTHKVERL 345 + I DPPR GL+ T + ++ RI YISCNP TL ++L+ + + +K+E + Sbjct: 369 --QNIDVIVFDPPREGLNKTTINAIIPKSLKRIAYISCNPRTLVRDLKLFTSKGYKIEFV 426 Query: 346 ALFDQFPYTHHMECGVLLTA 365 FD FP T+H+E LL+ Sbjct: 427 QPFDMFPQTYHVETLALLSK 446 >UniRef50_Q7VBX7 Uncharacterized RNA methyltransferase Pro_0965 n=1 Tax=Prochlorococcus marinus RepID=Y965_PROMA Length = 419 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 73/387 (18%), Positives = 146/387 (37%), Gaps = 46/387 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDL----VPE-VFRSPVSHYRMRAEFRIWHDG-DDL 59 + + Q A K L + ++ L P + S HYR ++ F ++++ + Sbjct: 49 MQEIEPHYQFAIKKKLLINALSRIGKLNDFPEPISITPSQFFHYRNKSTFPVYNESYGNT 108 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPV-------LRHKLFQIDYLT 112 + + + + +D+ P IN+ ++ + +++N + + L I + Sbjct: 109 IIGYYQRNSHKIVDIDNCPVLDHKINKALSDIRLILKDNHINADHDIRRKGGLRHISIRS 168 Query: 113 T-LSNQAVVSLLYH---KKLDDEWRQEA----EALRDALRAQNLNVHLIGRATKTKIELD 164 +N+ +++ + + KKL + + L + T+I Sbjct: 169 GINTNEVLITFVSNFSIKKLLFPITNKLNGSESNVVGILNNIQPKPNNKIFGATTEILTG 228 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG--DLLELYCGNG 222 +DYI ++ M SF Q N + + ++ + +++ Y G G Sbjct: 229 RDYIYDKF----CHMDILIGSTSFFQVNLVEAEKAINCIRNIISNTNKIVRIIDAYSGIG 284 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 S+ LA + RV+ EI + A N N+I + ++ + +F Sbjct: 285 TMSIPLASDGYRVIGIEINNEAHEIAIRNAEINNIKTITFENQDVTKYLPKILLPNDF-- 342 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETL--SQ 338 + +DPPR GLD ++ I Y+SCNP TL ++L + Sbjct: 343 -------------LILDPPRKGLDPSLIDVITKLMPIHICYLSCNPATLARDLSLILREH 389 Query: 339 THKVERLALFDQFPYTHHMECGVLLTA 365 + + + FD FP T H+E V L Sbjct: 390 KYSIISITAFDFFPQTTHLETLVYLKR 416 >UniRef50_B3S5B9 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S5B9_TRIAD Length = 556 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 77/412 (18%), Positives = 143/412 (34%), Gaps = 69/412 (16%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGD------- 57 L + Y+ QL K L ++ + + + +++YR + EF I D Sbjct: 163 PLWDKSYDQQLKIKKNNLDRILRKCTSKLEAIKVPEINNYRNKCEFAIGQDSKDEVVISV 222 Query: 58 ------DLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPV 100 + + S + E + AM + ++ + Sbjct: 223 RAGIAVGFRLGSYREGNLSVVPPTDCANVPEEAKAIAKAMQSLIQQSSLPVYSFVDHTGY 282 Query: 101 LRHKLFQIDYLTTLSNQAVVSLLYHKKLDDE-----WRQEAEALRDALRAQNLNVHLIGR 155 R + + L Q + + H + E + E + Q ++V+L + Sbjct: 283 WRQICVRRNLL----GQLMAIVQLHPQDLSEDQLQSLKDEINRCLEKCDCQVVSVYLQKQ 338 Query: 156 ATKT---------KIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDV 206 T++ +I Y+ E M +R +SF Q N + D Sbjct: 339 TTRSSAGNAGSVYEIISGSKYLYE----DFLGMKFRISPSSFFQGNTLAAEVLYRNIRDW 394 Query: 207 TKGSKGDL-LELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRM 265 + L++ CG G + +A+N +RV+ E+ + ++ A+ N N I N++ I Sbjct: 395 CPTKATTVVLDICCGTGTIGILMAKNVNRVIGIEMVEDAIEDARVNAELNDIKNIEFICG 454 Query: 266 AAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA---YPRILYI 322 AE+ + +L VDPPR+GL + K ++ +++Y+ Sbjct: 455 KAEDKLPTLVD----------NLSVISEVIAIVDPPRAGLHTRVIKALRRSLFIKKLIYV 504 Query: 323 SCNPETLCKNLETLS---------QTHKVERLALFDQFPYTHHMECGVLLTA 365 SCNP N L Q K+ + D FPYT E + Sbjct: 505 SCNPAMAVTNFVELCSPRTNRLRGQPFKIMKALAVDLFPYTEQCELVLQFER 556 >UniRef50_C4G0G8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G0G8_ABIDE Length = 514 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 70/423 (16%), Positives = 147/423 (34%), Gaps = 88/423 (20%) Query: 9 EQYEAQLAEKVVRLQSMMAPF----SDLVPEVFRSPVSHYRMRAEFRIW--HDGDDLYHI 62 YE QL K +++ M+ + + R + E+ + G + Sbjct: 88 LPYEEQLKLKSTQVKKMLDRVITTDYEYEEILGSPNEWETRNKMEYAFGDSYKGGPMSLG 147 Query: 63 IFDQQT-KSRIRVDSFPAASELINQLMTA-----------MIAGVRNNPVLRHKLFQIDY 110 + + + D ++ N+++ + LRH L + Sbjct: 148 LHKRGHFHDILYTDDCKIVNDDFNKVLRCVFEHFNEAEISFYNKAMHRGYLRHLLVR--- 204 Query: 111 LTTLSNQAVVSLLYH--------------------------------------KKLDDEW 132 + + +V+L K + + Sbjct: 205 RAAKTGEILVALETSSDFITKSEKNAMEMDSLKEFLASSNAVYDKDKEQSQAEKNILAKM 264 Query: 133 RQEAE------ALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVEN 186 ++ + + N V +A + +I +DYI+E L + ++ Sbjct: 265 VEKLRKVSLEGEIVGIIHLINNEVSDDVKAERQEILFGRDYINEEL----LGLKFKITTF 320 Query: 187 SFTQPNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSV 245 SF Q N+ + + ++G+++ +LY G G ++ +V+ EI + +V Sbjct: 321 SFFQTNSLGAEVLYSKVREYVGNNEGNVVYDLYSGTGTIGQIISPVAKKVIGIEIVEEAV 380 Query: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL 305 AA N N + N + + + + + + I +DPPR G+ Sbjct: 381 IAANENAKLNGLTNTEFLAGDVFKVLDEVKE---------------KPDFIILDPPRDGV 425 Query: 306 DSETEKMVQAY--PRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHHMECGVL 362 + K V +Y I+YI+C P +L +++ ++V+++ L D FP T H+E L Sbjct: 426 SPKALKRVLSYGVRDIVYIACKPTSLVRDIPEFEAVGYRVKKVCLCDMFPETLHVETVCL 485 Query: 363 LTA 365 L+ Sbjct: 486 LSK 488 >UniRef50_C8WTJ5 RNA methyltransferase, TrmA family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTJ5_ALIAD Length = 449 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 65/376 (17%), Positives = 129/376 (34%), Gaps = 31/376 (8%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD----LVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 + Y AQ A K R++ M + P YR + + + + Sbjct: 89 QVQHMAYAAQAAWKEARIRRMAERLGLEAGVVRPIETSHTPYRYRNQVQMPVRWNATAQR 148 Query: 61 H--IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 F+ + ++ E ++ ++ + + + + + + Sbjct: 149 VEMGFFELGSHDMAVTETCLLVPEAMDDVLRRARWFLTSLGSTAQFVHHVIVRQSHATGD 208 Query: 119 VVSLLYHKKLDDEWRQEAEAL-----RDALRAQNLNVHLIGRATKTKIELDQDYIDERLP 173 + + D ++ H ++ +++E L Sbjct: 209 MAVVFALATDDPSVKRSVGRFHAPQVVQVAVTVQPRAHGPVWGDGAEVMKGGSHLEENL- 267 Query: 174 VAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNF 232 + R SF Q A M +M + + + D+ ++ YCG G +L LA + Sbjct: 268 ---CGLRVRWSPRSFLQVQADMAERMYHHVVRAVEVRETDVVIDAYCGIGAMTLLLASHA 324 Query: 233 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 R + E + ++A A+ N N + N + + E + + Sbjct: 325 ARAVGVEEVEDAIADARANAKLNRVRNAEFVVDRVERWLPRFVEA------------GNR 372 Query: 293 CETIFVDPPRSGLDS--ETEKMVQAYPRILYISCNPETLCKNLETL-SQTHKVERLALFD 349 + + DPPR G+D R++Y+SCNP TL ++L L ++ V + FD Sbjct: 373 ADVLVFDPPRKGVDRAAIEAAAEANVERLVYVSCNPATLERDLRLLAARGFYVTDIQPFD 432 Query: 350 QFPYTHHMECGVLLTA 365 FP T H+EC V + Sbjct: 433 MFPQTSHVECVVTMRR 448 >UniRef50_B0S9K0 tRNA (Uracil-5-)-methyltransferase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0S9K0_LEPBA Length = 399 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 63/392 (16%), Positives = 136/392 (34%), Gaps = 52/392 (13%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVP--EVFRSPVSHYRMRAEFRIWHD----GDDLYH 61 Y +L +K ++ + + + V +YR + + L Sbjct: 24 DIDYTKELRKKEQNIKELFKAYRHVEIKTIVPSPSPEYYRHKIQLPFGRRIVGNKTLLTL 83 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLR--------HKLFQIDYLTT 113 +F+++ + + ++ A+ R +L + + + Sbjct: 84 GLFNKEASFVLDQTECQIQDPGLTEVALAVKQWARREGLLPYNEKSKRGMMKYLVARKSI 143 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEAL-----------------RDALRAQNLNVHLIGRA 156 + + +V ++ K+ + ++ L + N + Sbjct: 144 TTGEIIVGIVTAKEDLPHAKDASKRLHTAIQNRIGKTGKFGKLVGIIHNINTKHTTMALG 203 Query: 157 TKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLE 216 + + + YI E + +R ++F Q N + LD + +++ Sbjct: 204 REEHLLWGRPYIHEHF----GKHKFRVGLSTFLQVNPIQTPSLYNLVLDEIE-KDSRVID 258 Query: 217 LYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG 276 Y G G S +A VL E S A ++ N + NV+ + E + Sbjct: 259 AYSGIGTISFWIAGQSKEVLGIEENPNSHRTALESLKYNKVHNVRFRKGRVAEVLPTLY- 317 Query: 277 VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLE 334 +TI +DPPR+GL +E + + A + +I+Y+SC+P +L ++ Sbjct: 318 -------------GKNYDTIVLDPPRTGLGAEVTETILAMGFKKIVYVSCDPMSLREDSI 364 Query: 335 TLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366 L++ + + L D FP T H+E + K Sbjct: 365 LLTKQYFLNSLQPVDMFPRTDHVETVAVFRNK 396 >UniRef50_A6VUQ2 RNA methyltransferase, TrmA family n=2 Tax=Marinomonas RepID=A6VUQ2_MARMS Length = 440 Score = 276 bits (707), Expect = 8e-73, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 146/366 (39%), Gaps = 28/366 (7%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAP-FSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIF 64 E QL+ K LQ + + E + YR RA I + Sbjct: 97 FQHLANEQQLSAKADWLQGQLRNLITTQELETLSDTPTGYRRRARLAIDIKKGRMVLGFR 156 Query: 65 DQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLY 124 + +K I +D + + + + N L L ++ L Sbjct: 157 GKASKEIISIDQCVVLTPNLQSTFLLLKLKLLEND-LAGVLGHVELLEDTKG-VSALFRL 214 Query: 125 HKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERL-PVAGKEMIYRQ 183 + DE + E + V L +A K + E++ ++ + Sbjct: 215 TSPISDELKNAWEDWAE-----KGRVALYWQAPK---VGKAEVALEKMRYYDLGDLRLKY 266 Query: 184 VENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLALARNFDRVLATEIAK 242 F Q NAAMN +M+ A+D SK D+ L+L+CG GNFSL LA + V+ E+ + Sbjct: 267 HPQDFIQVNAAMNQKMVVQAMDWLNPSKQDVILDLFCGVGNFSLPLAVHAQAVIGVEVQE 326 Query: 243 PSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPR 302 V AA+ N N DN+ + + +L + +DPPR Sbjct: 327 TMVEAARENARVNGFDNLSFVAAD-------------LTKPVNNELFKQTITKVLLDPPR 373 Query: 303 SGLDSETEKMVQAYPR-ILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECG 360 +G + +++ P ILY+SCN TL ++ E L ++ ++V R++L D FP T H+E Sbjct: 374 AGAFEFLDSIIKIGPTQILYVSCNASTLARDAEYLVAKGYRVLRVSLMDMFPQTSHVETM 433 Query: 361 VLLTAK 366 +LL K Sbjct: 434 MLLQKK 439 >UniRef50_Q3IDM6 23S rRNA (uracil-5-)-methyltransferase rumA n=3 Tax=Alteromonadales RepID=RUMA_PSEHT Length = 441 Score = 276 bits (707), Expect = 8e-73, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 156/371 (42%), Gaps = 29/371 (7%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGD--D 58 L Q+ EK + + + F+ L +++P+ +HYR A + D Sbjct: 91 QLQHLDSSQQVVEKQIAVSKLFEKFAKLDELNWQAPLLSKATHYRRSARLAVMFDKKAKK 150 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 ++ +KS I ++ P SE+ + T + + L H + + L Q Sbjct: 151 MHVGYRASGSKSIISINECPVLSEVFANVFTVFDNLINQHKAL-HSVSHLQ-LCQGDEQN 208 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKE 178 V + + K + ++ + A L+ ++ IE + + Sbjct: 209 FVIIRHTKPISEDIKALVAQ-----SAAEQQWQLVWQSESEVIEHSHLAMPF-YALEELG 262 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLA 237 + + N+F Q NA++N ML+ A + + +L+L+CG GNFSL LA+ V+ Sbjct: 263 LKFEFGLNNFIQVNASVNQAMLKQAQNWLALKGDENVLDLFCGIGNFSLVLAKQAKTVIG 322 Query: 238 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 E +VA A N N I N Q N+++ + + + Sbjct: 323 VEGVASAVAMATQNAHTNSITNAQFNCFDLT------------NKIETASWFNKNLDVLV 370 Query: 298 VDPPRSGLDSETEKM-VQAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTH 355 +DP R+G + E++ ++ + ILY+SC+P TL ++ +SQ ++ ++ L + FP+T Sbjct: 371 LDPSRTGAITVLEQLPLKQFKTILYVSCDPVTLARDSAIISQAGFELHKIGLMNMFPHTG 430 Query: 356 HMECGVLLTAK 366 H+E L + Sbjct: 431 HIETMALFQRR 441 >UniRef50_C0DVS0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DVS0_EIKCO Length = 430 Score = 276 bits (706), Expect = 9e-73, Method: Composition-based stats. Identities = 75/368 (20%), Positives = 135/368 (36%), Gaps = 27/368 (7%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGDDLYH 61 L Q+A K L+ + + P+ P+ YR RA H Sbjct: 77 LQHVHSNVQVAYKQRILEDQLQRLGKVRPQYLLPPIYGQAWGYRYRARLSAHHSQGRTTL 136 Query: 62 IIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVS 121 + + + + P + + ++ A ++ L + I+ + + ++ Sbjct: 137 GFQSRSSHRIVDIRQCPILAPQLANQLSNTRALLQQLNRLHTPVRTIELHHSPAANSL-- 194 Query: 122 LLYHKKLDDEWRQEAEALRDALRAQNLNVHLI-GRATKTKIELDQDYIDERLPVAGKEMI 180 L+ + L R +L A N ++ L + D + LP + Sbjct: 195 TLHTEHLPKAARAHLIQHAQSLPA-NWHIWLQTPHRPAQPLLPDSPQLSYSLPEYALTLP 253 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATE 239 YR FTQ N NI ++ A+ + + G + +L+CG GNFSL +A +V+ E Sbjct: 254 YR--PGDFTQVNPTANILLVARAIQLLQPQPGERIADLFCGLGNFSLPIAAAGAQVIGIE 311 Query: 240 IAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 + A N NH+ + Q F + + I + Sbjct: 312 GSPELTERASQNARLNHLAERAQFHSADL------------FQTTEHTVAGWGYFDKILL 359 Query: 299 DPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTH 355 DPPRSG + + + RI+Y+SCNP T ++ L S+ ++ + + FP T Sbjct: 360 DPPRSGAYALVQALHAPYLPRRIVYVSCNPATFARDAAVLVSKGYRFRNAGIVNMFPQTA 419 Query: 356 HMECGVLL 363 H+E Sbjct: 420 HVETVGCF 427 >UniRef50_D1PMJ2 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMJ2_9FIRM Length = 453 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 73/387 (18%), Positives = 134/387 (34%), Gaps = 47/387 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV----PEVFRSPVSHYRMRAEFRIWHDGDD-LY 60 L Y+A+ K +Q A L P + ++ YR + + + D + L Sbjct: 84 LRHISYQAECRAKTCFVQDAFARLGKLDLPVHPVLGAPDINRYRNKVQLPVGTDENGHLT 143 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQID 109 F ++ I E +N+L + + ++RH + Sbjct: 144 TGFFAGRSHRIIACPDCKLQPEWMNRLAARACELLEKAGATSYDEESHTGLVRHLFLRQG 203 Query: 110 YLTTLSNQAVVSLLYHKKLDDEWRQEAEALR------DALRAQNLNVHLIGRATKTKIEL 163 + + Q ++ + + + + ++ E L+ L +N + T L Sbjct: 204 WHS---GQRLLCFILNGRALPDEQRICEELQREFDLTTVLVNENTARTNVILGPHTHTVL 260 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNG 222 I++ L + R + F Q N + A D LL+LYCG G Sbjct: 261 GPGVIEDTLA----GVSLRMGVHEFYQVNTPAAEVLYAQARTYAALQPEDFLLDLYCGMG 316 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHID--NVQIIRMAAEEFTQAMNGVREF 280 L++ + R+L EI +V A+ A + Sbjct: 317 TIGLSMLPDCRRLLGVEIVPQAVEGAKATAARLGLSPQRADFRCQD------------AG 364 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ 338 + + + I VDPPR G D T + + A ++ +SCN T ++ L++ Sbjct: 365 AAAAQLAAEGAHPDVIVVDPPRKGCDPATLQAIVQMAPRTLVMVSCNAATAARDTRWLTE 424 Query: 339 -THKVERLALFDQFPYTHHMECGVLLT 364 ++ + D FP T H+EC V L Sbjct: 425 HGYRAMEVQPVDLFPRTRHVECVVKLV 451 >UniRef50_A1SSB8 23S rRNA (uracil-5-)-methyltransferase rumA n=2 Tax=Psychromonas RepID=RUMA_PSYIN Length = 444 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 86/368 (23%), Positives = 146/368 (39%), Gaps = 27/368 (7%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEF--RIWHDGDDL 59 L AQ+ K L S+ F+ VP+ P+ YR A F + L Sbjct: 94 LQHLNQAAQIQIKSDGLLSLFQRFAKKVPQQLEKPIIDKAWEYRRTARFGLQFDKKNKQL 153 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + Q+ I P + L+ + + + H L ++ L AV Sbjct: 154 KMGLRRAQSNELIDQKVCPVLLPELECLIPPLKILLNSLQCKAH-LGHVELL-YADQGAV 211 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 V L + K L + + + Q +N + ++ + + RLP + Sbjct: 212 VLLRHMKTLTSP---DLQLITAFSALQKVNFFGQASSNQSVCLAGEANLSYRLPEWDCSL 268 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLAT 238 + F Q N+ +N +M+ A+ K D +L+L+CG GNF+L +AR + V+ Sbjct: 269 SF--TPTDFLQVNSDINKKMVSQAMQWLALEKNDSVLDLFCGLGNFTLPIARQVESVVGI 326 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E + V A N N++ N + + L + + + + Sbjct: 327 EGVQQMVDRATANAQLNNLQNARFYQADL-----------SGENLIEQEWANQNFNKVLL 375 Query: 299 DPPRSGLDSETEKMVQAYP-RILYISCNPETLCKNLE-TLSQTHKVERLALFDQFPYTHH 356 DP R+G + Q P ILY+SC+P TL ++ + L + +K+++L L D FP T H Sbjct: 376 DPARAGALDCLAFIAQKKPSHILYVSCDPLTLARDSQVLLDKGYKLDKLGLLDMFPQTAH 435 Query: 357 MECGVLLT 364 ME L T Sbjct: 436 MESMALFT 443 >UniRef50_Q1QDU2 23S rRNA (uracil-5-)-methyltransferase rumA n=19 Tax=Proteobacteria RepID=RUMA_PSYCK Length = 513 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 76/387 (19%), Positives = 150/387 (38%), Gaps = 40/387 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH--DGDD 58 +L Q +AQ+ K L M+ +++ P+ + PV YR +A + + + Sbjct: 138 NLQHWQPDAQITFKQSVLAEMLVHQANVAPDHWLEPVVGDRLGYRTKARLGVRYVVKKET 197 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTL---- 114 ++ + ++ I + + + R K+ Q++ Sbjct: 198 ALVGFRERSSNFLAELNECHILDPRIGFEIENLKTLISTLDS-RDKIAQLELAMGEHLPE 256 Query: 115 --SNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIE--------LD 164 V+L+ + L+ + + L+ A+N ++L + + L Sbjct: 257 LPDGDQPVALIV-RNLEPLSDGDIDKLKVFFAARNWQLYLQSKGADSIQRIALRDTDDLS 315 Query: 165 QDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGN 223 + + + ++ + + FTQ N ++N QM + A D+ G +L+L+ G GN Sbjct: 316 EQFGRLYYQLPEYDLTFEFIPTDFTQVNLSVNRQMTKLACDLLDLKAGERVLDLFSGLGN 375 Query: 224 FSLALARNFDR---VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 FSL LAR V+ E ++ A A N N I+N + Sbjct: 376 FSLPLARLVGETGSVVGVEGSEAMTARAADNARRNGINNTEFYSQDLT------------ 423 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLE-TLSQ 338 + + + + +DPPRSG + + + RI+Y+SCNP TL ++ + L Q Sbjct: 424 HDCTDKPWANQGFDALLIDPPRSGAWEIMQYLPKFNAERIVYVSCNPATLARDTKALLEQ 483 Query: 339 THKVERLALFDQFPYTHHMECGVLLTA 365 +++ + D F +T H+E Sbjct: 484 GYRLTHAGVMDMFCHTGHVESIARFEK 510 >UniRef50_D0WBI8 23S rRNA (Uracil-5-)-methyltransferase RumA n=5 Tax=Neisseria RepID=D0WBI8_NEILA Length = 443 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 69/368 (18%), Positives = 134/368 (36%), Gaps = 23/368 (6%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS----HYRMRAEFRIWHDG-DDLY 60 L AQ+A K ++ + + P+ P+ HYR RA F + D L Sbjct: 81 LQHISPAAQVAFKQRMMEEQLERIGKVRPQQILPPIYGYARHYRDRARFSVSLDKLCRLK 140 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 ++T + + S + ++ + A+ +++ ++ V+ Sbjct: 141 LGFQAKKTNDVVDISSCMLLPKPVSDKLPAIRGLLQDLAEEGSVARFAEFYRGSE-ITVL 199 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI 180 ++ + KL D+ + V L ++ + + + + Sbjct: 200 NIAFKSKLRQNEENRIRQWFDSELSDGWQVWLQIEGGVSQPFYPKTDKTLKYTLPEFGIE 259 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATE 239 FTQ N N M+ A+ + +G + +L+CG GNFSL + ++ V+ E Sbjct: 260 MPFRPGDFTQINTDTNRLMVSRAVKMLDIRQGERIADLFCGLGNFSLPMVKSGADVVGIE 319 Query: 240 IAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 A+ V A N N D I + T+ + + + + Sbjct: 320 GAENLVRRAWQNARLNGCDGQTDFIAANLFDCTEKTVA------------SWGRFDKMLI 367 Query: 299 DPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTH 355 DPPRSG + + +I+Y+SCNP TL ++ L + + + + + F T Sbjct: 368 DPPRSGAYEVVKSLHTPYLPQKIVYVSCNPSTLARDAGVLVEKGYILSGAGIMNMFAQTS 427 Query: 356 HMECGVLL 363 H E + Sbjct: 428 HTESVAVF 435 >UniRef50_A7NGT5 RNA methyltransferase, TrmA family n=2 Tax=Roseiflexus RepID=A7NGT5_ROSCS Length = 439 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 145/370 (39%), Gaps = 37/370 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEV-----FRSPVSHYRMRAEFRIWHDGDDL 59 ++AQ + L +A F+ + P V F S YR D Sbjct: 92 PWQHIAFDAQQRLRRQILADQLAKFAGVDPAVVEATAFASKPWEYRNNTRLHC----DGR 147 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 ++ T+S +D P ++N+ + A+ + + + L ++ + + Sbjct: 148 RIGYYESNTRSIAELDHDPLLHPVLNEALAALRSALADELDDAPPL-EVTLRVSEAYGYC 206 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 ++ L + A L V L D + E L ++ Sbjct: 207 IAALRGRGDRRSLAARWRARCPVLAGVVFTV----PPPHMLPPLGADTLVEELA----DL 258 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVT-KGSKGDLLELYCGNGNFSLALARNFDRVLAT 238 + +F Q N A +L ++G LL+LYCG G F+L LARN ++ Sbjct: 259 TFLLRPTTFFQVNVAAAATLLNLIRAGLGDEARGRLLDLYCGAGAFTLPLARNAIEIVGV 318 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E +VA A+ + A NHI NV+ I +AE ++G + + + Sbjct: 319 EEYAGAVADAERSAAVNHISNVRFITGSAEAVLANLDG---------------PFDAVVL 363 Query: 299 DPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPYTH 355 DPPR G + +A RI+Y+SC+P TL ++L+TL + + V R D FP T Sbjct: 364 DPPRRGCHPRVLHALIERAPRRIVYVSCHPATLARDLKTLIAGGYAVVRATPVDLFPQTP 423 Query: 356 HMECGVLLTA 365 H+E V L Sbjct: 424 HIESVVALMR 433 >UniRef50_B4U6H3 RNA methyltransferase, TrmA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6H3_HYDS0 Length = 415 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 79/366 (21%), Positives = 155/366 (42%), Gaps = 33/366 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE----VFRSPVSHYRMRAEFRIWHDGDDLY 60 H Y QL +K L+ + ++ E + HYR R +F++ + Sbjct: 75 HFQHIDYTEQLTQKSNILKETLKKIGNIEIENLNGIIYDEPYHYRNRVKFKVRNKE---- 130 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 + F + ++V+ P +S+ IN LM + ++ + + + + +V Sbjct: 131 -LGFVGVDEDFVKVEHCPISSKAINDLMPFLKEFAKHFNPSWISV----FYSDTQKEYMV 185 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMI 180 + +D +++ + ++ L +N+ + + K + ++ + ++ Sbjct: 186 KFASYDYID---KEKLKKFKEHLTPKNVVGITLVKDDKREDKIILSIGTPFTFIELLKIK 242 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEI 240 YR NSF Q N + ++L+ L+ + +L+ Y G G F L LAR V +I Sbjct: 243 YRISVNSFFQVNIKVAQKLLQTLLEK-ENYFDRVLDDYGGVGLFGLHLARRSGSVDIADI 301 Query: 241 AKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP 300 K S+ A+Y+ N+I+NV + F + + +DP Sbjct: 302 NKSSINDAEYSAKINNINNVSFYVQNSYVFLKKSLYK--------------HANLLVLDP 347 Query: 301 PRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHME 358 PRSGL E ++ I YISC P +L ++L+ L + ++++ + + D FP T+H+E Sbjct: 348 PRSGLSKEEIGLILLGKPDYIWYISCEPSSLARDLKLLGKKYQIKEIYMADMFPQTYHIE 407 Query: 359 CGVLLT 364 V L Sbjct: 408 TAVKLE 413 >UniRef50_Q12PZ8 23S rRNA (uracil-5-)-methyltransferase rumA n=14 Tax=Shewanella RepID=RUMA_SHEDO Length = 468 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 155/391 (39%), Gaps = 51/391 (13%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD---LVPEVFR----SPVSHYRMRAEFR--IWHDG 56 L +AQ K L +M FS + P+V SP HYR RA ++ Sbjct: 94 LQHLALDAQQNHKQQSLNELMVKFSGSPVIDPQVQAAPLVSPPWHYRRRARLATYFNNND 153 Query: 57 DDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSN 116 L +K + + P +E ++ L+ + + L ++ LT N Sbjct: 154 KSLKLGFRALSSKQIVPIKQCPVLAEPLSALINPFSLLLARLKA-KASLGHLE-LTQADN 211 Query: 117 QAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATK---------------TKI 161 L K L + AL Q +N+ L + T++ Sbjct: 212 GTFAVLRVTKVLPAA---DIRALASFALTQGINLLLQDDSGALTDVMTMAPAEDEGATQV 268 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCG 220 E + E ++ ++ + +F Q NA +N +M+E A++ G +L+L+CG Sbjct: 269 EQSALTLPE-YALSQGQVSCQFTPGNFVQVNAEVNQRMVEQAVNWLDLQVGERVLDLFCG 327 Query: 221 NGNFSLALARNFD-----RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN 275 GNFSLALA V+ E V A+ N N++ N+ Sbjct: 328 VGNFSLALANRGQNLDGLEVIGVEGVPEMVQQARENAKRNNLANLSFYHAD--------- 378 Query: 276 GVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLE 334 + + + + + +DP R+G + + + +++Y+SCNP +L ++ Sbjct: 379 ----LSADLSNEKWLGKIDKLLLDPARAGAFESLQWLQKMKPKKVVYVSCNPASLARDSS 434 Query: 335 -TLSQTHKVERLALFDQFPYTHHMECGVLLT 364 LSQ +++++L++ D FP THH+E L Sbjct: 435 VLLSQGYQLKQLSMIDMFPQTHHIEAMALFE 465 >UniRef50_A8PP31 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Rickettsiella grylli RepID=A8PP31_9COXI Length = 443 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 82/373 (21%), Positives = 149/373 (39%), Gaps = 30/373 (8%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWHDGDDL- 59 +L ++AQL K L + + + P +PV YR RA + + Sbjct: 87 NLQHLNHQAQLQHKEKILVNQLTHVAKTKPTSLLAPVMATGWGYRRRARLGVKYVAKKQA 146 Query: 60 -YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 ++ ++ + +++L+ + +++ H + QI+ Sbjct: 147 VLVGFREKNGHYLAQIQTCKTLDFRVDRLLIPLQQLIQSLNAF-HDIPQIEVALGDE--- 202 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLI-GRATKTKIELDQDY--IDERLPVA 175 + L + L + AL++ + ++ ++L G T ++ + RL Sbjct: 203 -ILGLVFRHLVPLNNSDVLALKNFAKKYSVQLYLQPGNEKTTHCIWPENPQLLSYRLQNK 261 Query: 176 G-KEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELYCGNGNFSLALARNFD 233 + + + + F Q NA +N M++ A+++ +L+L+CG GNFSL LA Sbjct: 262 AHRSLEFFFEPHHFIQINATINQAMIQHAIELLSPHFSDRILDLFCGLGNFSLPLALRCQ 321 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 V+ E V A+ N N I+N Q + Sbjct: 322 SVVGIEGHSALVEQAKINARHNAINNTQFYTADLT------------GSILKEVWAQQTF 369 Query: 294 ETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQF 351 I +DPPRSG +++ + +++YISCNP TL ++ E L Q + +ER + D F Sbjct: 370 NKILLDPPRSGALEVIQQIARWKVEKMVYISCNPATLARDSEELIKQGYHLERAGIMDMF 429 Query: 352 PYTHHMECGVLLT 364 P THH E L T Sbjct: 430 PQTHHSEAICLFT 442 >UniRef50_C5CUM3 RNA methyltransferase, TrmA family n=1 Tax=Variovorax paradoxus S110 RepID=C5CUM3_VARPS Length = 482 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 141/386 (36%), Gaps = 35/386 (9%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIWH--DGDDL 59 + AQ+A K L+ + + P+ P+ HYR RA + H + Sbjct: 101 MQHLDEAAQVAVKQRALEDNLWHLGKVRPDNVLRPLEGPAWHYRYRARLSVRHVVKKGTV 160 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYL------TT 113 +++++ + P + ++ ++ + A + + R QI+ TT Sbjct: 161 LIGFHERKSRYLADMQVCPVLPKQVSDMLMPLRALIGSLDA-RETCPQIELACGDAPGTT 219 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLP 173 + L + + L + +A A + + L + T L++ + Sbjct: 220 SLGTIALVLRHLEPLSNADIGRLKAF--AAQNAGVQWWLQAKGPDTVKLLEEGGMPLSYE 277 Query: 174 VAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNF 232 + + FTQ N +N ++ AL + +++ +CG GNF+L LA Sbjct: 278 LPQFGVTMPFKPTDFTQVNPHINRALVGKALRLLDVQADERVIDWFCGLGNFTLPLASRA 337 Query: 233 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQ 292 VL E + VA A N + N ++A F F + + Sbjct: 338 REVLGIEGSDTLVARASDNFSKNQPATSARRALSATRFVAR----NLFEMTPAMLVADGS 393 Query: 293 CETIFVDPPRSGLDSETEKMV-------------QAYPRILYISCNPETLCKNLETL--S 337 + VDPPR G + + M RI+Y+SCNP TL ++ L Sbjct: 394 ADKWLVDPPREGAFALAKAMADLHLQPELRTDGWTPPKRIVYVSCNPSTLARDAGLLVHQ 453 Query: 338 QTHKVERLALFDQFPYTHHMECGVLL 363 ++ + + FP+T H+E + Sbjct: 454 AGYRCTFAGVINMFPHTAHVESIAVF 479 >UniRef50_B5YG03 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YG03_THEYD Length = 389 Score = 273 bits (699), Expect = 7e-72, Method: Composition-based stats. Identities = 65/368 (17%), Positives = 128/368 (34%), Gaps = 70/368 (19%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLV-------PEVFRSPVSHYRMRAEFRIWHDGDD 58 Y Q+ K + + + + +YR RA+F I Sbjct: 79 FQHVAYSYQIKLKEIVVMEQLKRIGGFENPEDFTNLTLKAESPYNYRNRADFSINRQN-- 136 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + T + V+ + IN++++ + + + + T Sbjct: 137 -LLGFKIRGTHKFLHVECCHIMHDKINKMLSLLQGK-KPKRKSHNITIRYGINTGT---- 190 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKE 178 + +IE Q + ERL Sbjct: 191 -------------------------------WLIQPEMDTVEIETGQKFYYERL----LG 215 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLAT 238 + SF Q N ++++ L+ +++ Y G G F++ LA+ ++V+A Sbjct: 216 KDFIISAPSFFQVNTYQAEKLIQTVLNYITQEDKTVIDAYAGVGTFTVFLAQKAEKVIAI 275 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E ++ + AQ NI + DN+ + EE + I + Sbjct: 276 EESRSAYKDAQINIK--NFDNITYLCKKTEEAL---------------FESKINGDAIVI 318 Query: 299 DPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTH 355 DPPR G E + + + +++Y+SC P TL ++L+ L + +K++ + D FP T+ Sbjct: 319 DPPRVGCMKEVLQAIAEKKIKKVIYVSCEPSTLARDLKYLKEMGYKLKEIQPVDMFPQTY 378 Query: 356 HMECGVLL 363 H+E L+ Sbjct: 379 HIENVALM 386 >UniRef50_Q2L016 23S rRNA (uracil-5-)-methyltransferase rumA n=58 Tax=Betaproteobacteria RepID=RUMA_BORA1 Length = 476 Score = 273 bits (698), Expect = 8e-72, Method: Composition-based stats. Identities = 72/377 (19%), Positives = 141/377 (37%), Gaps = 37/377 (9%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPV----SHYRMRAEFRIW--HDGDDL 59 + + +Q+A K L+ + P+ P+ YR RA + + Sbjct: 79 MQHLEPTSQVAIKQRALEDTFWHVGKIRPQRVLPPLHGPTWGYRYRARLSVRVVPKKGGV 138 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 ++++ + ++ L+ + A + ++ QI+ Sbjct: 139 LVGFHERKSSYVADMRECHVLPRHVSDLLLPLRAMIAALSRP-ERIPQIEVALGEG---- 193 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYID---ERLPVAG 176 V+ L + ++ + LRD N+ L + T LD + D +P G Sbjct: 194 VTALVLRHIEPLNDHDITVLRDFAARHNVQWWLQSKGPDTVHPLDPAHGDTLAYTMPEFG 253 Query: 177 KEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELYCGNGNFSLALARNFDRV 235 M YR FTQ N A+N M+ AL + + + +L+CG GNF+L LA Sbjct: 254 LRMPYR--PTDFTQVNHAINRSMVSRALKLLEVQPTDRVADLFCGLGNFTLPLATQGREA 311 Query: 236 LATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCE 294 + E +K A A + ++ + + E + + + Sbjct: 312 VGVEGSKALTDRALEAAARHGLEGRTRFATLNLFEVDVSWLRGLGY------------FD 359 Query: 295 TIFVDPPRSGLDSETEKM-----VQAYPRILYISCNPETLCKNLETL--SQTHKVERLAL 347 + +DPPR G + + + + RI+Y+SCNP TL ++ + + ++ + Sbjct: 360 RMLIDPPREGAHAVAQALSQLTPAERPRRIVYVSCNPATLARDAAIMVHEGGYVLKAAGV 419 Query: 348 FDQFPYTHHMECGVLLT 364 + FP+T H+E + Sbjct: 420 INMFPHTGHVESIAVFE 436 >UniRef50_A4E7H7 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E7H7_9ACTN Length = 442 Score = 273 bits (698), Expect = 9e-72, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 140/382 (36%), Gaps = 44/382 (11%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRS---------PVSHYRMRAEFRIWHDG 56 AQLA K L+S + PE YR + E Sbjct: 82 WGNLSRTAQLAAKEQNLRSTLERIGKFAPEQVDELVQPICHTKDDWGYRNKIELEPTVVN 141 Query: 57 DDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-NPVLRHKLFQIDYLTTLS 115 + + + VDS P + + + +++ + + L ++ + Sbjct: 142 GRVRLGMHGVDPSKIVAVDSCPLFDKRFPKALKSVVGALNYLSGSHNLGLERVGIRASRR 201 Query: 116 NQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATK-------TKIELDQDYI 168 +A+ L+ Q + L DA ++ V ++ + K ++ + Sbjct: 202 TKALEVALWTPTGSFPRSQVSRVLADAAHPTSI-VRVMSKGEKKARRVSKVEMLAGEGSW 260 Query: 169 DERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDL-LELYCGNGNFSLA 227 E + R SF Q N ++E ++ + +L ++LYCG G F+L Sbjct: 261 TENIAEG----QMRLSAPSFFQVNTKGAEILIELVMEALDPQEDELAVDLYCGAGTFTLP 316 Query: 228 LARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID 287 LAR D V A E P+V + N+ N +DNV +I A + Sbjct: 317 LARRCDFVAAVEAYGPAVRDLRRNLEINKLDNVDVIGGDA-----------------VRE 359 Query: 288 LKSYQCETIFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ--THKVE 343 + + VDPPR+GL E ++ + + Y+SC+P TL ++L+ + T Sbjct: 360 FPDQDADVLVVDPPRAGLAPEAIDLIASTSAHDVAYVSCDPATLARDLKRFVEEGTFSPV 419 Query: 344 RLALFDQFPYTHHMECGVLLTA 365 ++ D FP T H E V L Sbjct: 420 KITPVDLFPQTFHCETVVHLKR 441 >UniRef50_A9WK13 RNA methyltransferase, TrmA family n=3 Tax=Chloroflexus RepID=A9WK13_CHLAA Length = 416 Score = 272 bits (697), Expect = 9e-72, Method: Composition-based stats. Identities = 79/368 (21%), Positives = 139/368 (37%), Gaps = 40/368 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPF-----SDLVPEVFRSPVSHYRMRAEFRIWHDGDDL 59 Y AQ+ K + + + F + P + YR A + D Sbjct: 76 PWQHIAYPAQVRYKGIIVADQLRKFLPDITIPIQPVIAAPHPWGYRNSARLHV----DGA 131 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 TK+ + + P + + ++ + +++ + + + Sbjct: 132 TLGYHAAGTKTVVDLADDPLLLPALRDTLRSLRR-LAFAGLIKEVTLRASATYGYAAARL 190 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 D R L A +A L G + + + ++ + L + Sbjct: 191 ------SPTPDAERHALWRLATAWKAST--PVLAGVTLEDEPFVGTPFVYDELA----GV 238 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATE 239 I+R SF Q N A +M+ D G LL+ Y G G+F+L LAR +D V+A E Sbjct: 239 IFRLSLGSFFQVNHAQAERMVAVVRDALAPHGGRLLDAYSGVGSFALPLARCYDEVIAVE 298 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 299 +P+V + + N I NVQ I AAE ++G + +D Sbjct: 299 AYQPAVEDGRQSAIDNQITNVQFINGAAEHTVAHLSG---------------PFHAVILD 343 Query: 300 PPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLE-TLSQTHKVERLALFDQFPYTHH 356 PPR G + + A P+I+YISC+P + ++L L+ +++ + D FP T H Sbjct: 344 PPRRGCHPALIEAIIAHAPPQIVYISCHPGLIGRDLAPLLAAGYQITFVQPVDLFPQTPH 403 Query: 357 MECGVLLT 364 +E + L Sbjct: 404 IETIIHLR 411 >UniRef50_C6NU44 23S rRNA (Uracil-5-)-methyltransferase rumA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU44_9GAMM Length = 440 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 146/370 (39%), Gaps = 27/370 (7%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS----HYRMRAEFRIWHDGDDLYH 61 L + AQ+A K L+ + + P P+ HYR +A + Sbjct: 88 LQHLEPGAQIAVKQRHLEDQLQHIGRVRPARILPPIQGPSLHYRSKARLSVRVPKTRGAL 147 Query: 62 IIFDQ-QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 + F + + ++S P + + + + A V Q + T ++ ++ Sbjct: 148 VGFREYHSSFVAAMESCPVLDPRVGERILDLRALVARLQRPAAI-PQWEIACTDAHAVLI 206 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKT-KIELDQDYIDERLPVAGKEM 179 + LD R + L+ A L + L G ++ + +D + + ++ Sbjct: 207 L----RHLDALSRSDLRLLQGFADAHGLRILLQGGGPESLQALPGEDVPELEYALPEFDL 262 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLAT 238 R F Q N +N ++ A+ + G+ +++L+CG GNF+L +AR R L Sbjct: 263 RLRFQPLGFIQVNPWINPVLVRRAMALLAPEPGEEIVDLFCGLGNFTLPMARLGARALGV 322 Query: 239 EIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 E VA A++N N + I + A R + Sbjct: 323 EGDTRLVAQARFNAELNGLAARAHFIAADLTQTALADLPGAAGVR------------KML 370 Query: 298 VDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLETL--SQTHKVERLALFDQFPYTH 355 +DPPRSG + + A R++Y+SCNP+TL ++ L Q ++E + + FP+T Sbjct: 371 IDPPRSGAIEILKGIGPALRRLVYVSCNPDTLARDSAYLVQQQGFRLEAAGIVNMFPHTA 430 Query: 356 HMECGVLLTA 365 H+E L T Sbjct: 431 HVESVALFTR 440 >UniRef50_C0VPT5 23S rRNA (Uracil-5-)-methyltransferase(23S rRNA(M-5-U1939)-methyltransferase) n=3 Tax=Acinetobacter RepID=C0VPT5_9GAMM Length = 463 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 81/374 (21%), Positives = 151/374 (40%), Gaps = 31/374 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSH----YRMRAEFRIWH--DGDDL 59 L + Q+ K LQS + F+ L PE + +P+ YR RA + + D L Sbjct: 101 LQHIHPDEQILLKQNVLQSHLQHFAGLQPEQWLTPIRSSKIDYRRRARIGVRYIPRQDRL 160 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + + + + ++ + + + I ++ Sbjct: 161 VMGFREHHSNHLTTIHQCKVLDQTLSDAIPELRKCLEGLMAKA----HIGHVELAMGDHE 216 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLP--VAGK 177 V+LL + L++ + LR + ++L R + +D RL + Sbjct: 217 VALLI-RHLEELNVSDVNHLRQFALQRQWQLYLQPRGADSLHRVDDVQAPMRLHYHLDDF 275 Query: 178 EMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFD--- 233 ++ + FTQ N+A+N +M++ A ++ + +G +L+L+CG GNFSL LAR Sbjct: 276 DIRFAFSPLDFTQVNSAVNARMIQLACELLQLKEGERVLDLFCGLGNFSLPLARCVGDTG 335 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 +V+ E + V A N AN ++ + Sbjct: 336 QVIGVEASDEMVLRATENAKANSLNQAIFFSQDLTK------------DFSHHPWAKQGF 383 Query: 294 ETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQF 351 + + +DPPRSG + + RI+Y+SCNP TL ++ L+Q +++++ A+ D F Sbjct: 384 DALLIDPPRSGAFEVMQYVPSFGANRIVYVSCNPSTLARDAGVLAQHGYQLKKAAVMDMF 443 Query: 352 PYTHHMECGVLLTA 365 +T H+E L Sbjct: 444 THTEHVESIALFEK 457 >UniRef50_C4Z8S6 tRNA (Uracil-5-)-methyltransferase n=44 Tax=Firmicutes RepID=C4Z8S6_EUBR3 Length = 470 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 80/405 (19%), Positives = 154/405 (38%), Gaps = 67/405 (16%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVF--------RSPVSHYRMRAEFRIW--HD 55 T YE QL K+ +++ +++ E S YR + EF + Sbjct: 83 YQTVPYEKQLDMKLTQVKKLISDAIGTEKESGYEFIGIHGSPKKSEYRNKMEFSFGDEYK 142 Query: 56 GDDLYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAG-----------VRNNPVLRH 103 L + + + + V E ++ A + + LRH Sbjct: 143 DGPLALGMHKRGSFYDLVTVSDCQIVDEDFRTILKATLDYFSKNNIPYFHRATHKGYLRH 202 Query: 104 KLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEA--------------EALRDALRAQNLN 149 L + T + + +V L+ + + +E + L +N + Sbjct: 203 LLVR---KATKTGEIIVDLVTTTQTEGFNEEELLAGFRYALLTRHYDGRFKGVLHTKNDS 259 Query: 150 VHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKG 209 V + + T++ Y E+L + ++ SF Q N+ + E A + G Sbjct: 260 VADVVKNEGTEVLYGDSYFYEKL----LGLKFKITPFSFFQTNSLGAEVLYETAREFILG 315 Query: 210 SKGD------LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQII 263 D + +LY G G + +A V+ EI + +V AA+ N A N +DN + I Sbjct: 316 DNKDSLNGKTVYDLYSGTGTIAQLMAPVCKEVVGVEIVEEAVCAAKENAALNGLDNCKFI 375 Query: 264 RMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETE-KMVQ-AYPRILY 321 + + + + I +DPPR G+ + K+++ ++Y Sbjct: 376 AGDVLKVLDEIEE---------------KPDYIILDPPRDGIHPKAIGKIIEYGVENMVY 420 Query: 322 ISCNPETLCKNLETL-SQTHKVERLALFDQFPYTHHMECGVLLTA 365 ISC P +L ++L+ + ++VE++ D FP T+H+E VL++ Sbjct: 421 ISCKPTSLARDLQIFMDRGYRVEKICCVDMFPNTYHVETVVLMSK 465 >UniRef50_A2BEG2 Novel protein (Zgc:55519) n=2 Tax=Danio rerio RepID=A2BEG2_DANRE Length = 619 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 69/430 (16%), Positives = 136/430 (31%), Gaps = 84/430 (19%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPF--------------------------SDLVPEVFR 38 L YE QL K ++ ++ L Sbjct: 196 PLWKVPYEEQLMMKEKEVEGVLQKLAREIGNNNKAMLPWLFVQKEKHNKMCCPLEAIRPS 255 Query: 39 SPVSHYRMRAEF--RIWHDGDDLYHII----FDQQTKSRIRVDSFPAASELINQLMTAMI 92 + YR + EF + DG+D + + + + +++ Sbjct: 256 PLQTGYRNKCEFVIGVGADGEDRTVGFRLGKYKGGSCAVVSPSETTNVCSEAKRVVQCFQ 315 Query: 93 AGVRNNPVL---------RHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDAL 143 +R P + + A+V K + E + + L Sbjct: 316 QFIRTTPYAVYSPETYEGHWRQLTVRTTRLKQTMAMVFFNPQKLQEKELEELKQNLGQYF 375 Query: 144 ------RAQNLNVHLIGRATKT---------KIELDQDYIDERLPVAGKEMIYRQVENSF 188 +++ + +T + +++I E L + +R +SF Sbjct: 376 TEGEGKECAVTSLYFVRMGQRTSAGTEDLPCEHVTGEEWIHEEL----LGLKFRISPHSF 431 Query: 189 TQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPSVAA 247 Q N + + + + +L++ CG G ++LA+ +V+ E+ + +V Sbjct: 432 FQTNTPAAEILYSAVGEWAQLDQDSTVLDVCCGTGTIGISLAKRVKKVIGIELCQEAVKD 491 Query: 248 AQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDS 307 A+ N AN + NV+ AE+ + T VDPPR+GL S Sbjct: 492 AEANAKANGLTNVEFHCGKAEDVFPTILNAVV-----------SPNVTAIVDPPRAGLHS 540 Query: 308 ETEKMVQA---YPRILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTH 355 + ++ R++Y++CN + N L + + + D FP T Sbjct: 541 KVILAIRKAEHLKRLVYVACNAKAAMNNFIDLCRAPSNRVRGAAFRPVKAMAVDLFPQTM 600 Query: 356 HMECGVLLTA 365 H E +L Sbjct: 601 HCETILLFER 610 >UniRef50_Q9UZR7 Uncharacterized RNA methyltransferase PYRAB10780 n=3 Tax=Thermococcaceae RepID=Y1078_PYRAB Length = 405 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 74/375 (19%), Positives = 150/375 (40%), Gaps = 57/375 (15%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP-VSHYRMRAEFRIWHDGDDLYHIIF 64 L Y+ QL K + + EV SP + +R R + I DG I F Sbjct: 72 LQHLNYDYQLEFKRKK----LKRILGFEVEVVPSPKIFGHRNRIDLAITKDG-----IGF 122 Query: 65 DQQTKS--RIRVDSFPAASELINQLMTAMIAGV-----------RNNPVLRHKLFQIDYL 111 ++ K + +D P + + + + + ++ LR+ + + Sbjct: 123 RERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKISVWNIKKDEGFLRYMVLREGKF 182 Query: 112 TTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDER 171 T + +V+ + + + + + N + + + +++I ER Sbjct: 183 TE---EVMVNFVTKEGNLPDPTNYFD-FDSIYWSVNRSKSDVSYGD-IERFWGKEFIRER 237 Query: 172 LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN 231 L ++ Y NSF Q N+ + ++ ++ +G +L++Y G G F + LA+ Sbjct: 238 L----DDVDYLIHPNSFFQTNSYQAVNLVRKVSELVEG--EKILDMYSGVGTFGIYLAKR 291 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY 291 V + + ++ A+ N+ N++D EF ++ Sbjct: 292 GFNVKGFDSNEFAIEMARRNVEINNVD-------------------AEFEVASDREVSVK 332 Query: 292 QCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTHKVERLALFD 349 +T+ VDPPR+GL K + + I+Y+SCNPET ++++ L ++++ + D Sbjct: 333 GFDTVIVDPPRAGLHPRLVKRLNREKPGVIVYVSCNPETFARDVKMLD--YRIDEIVALD 390 Query: 350 QFPYTHHMECGVLLT 364 FP+T H+E L Sbjct: 391 MFPHTPHVELVAKLV 405 >UniRef50_Q8U1N4 Uncharacterized RNA methyltransferase PF1172 n=6 Tax=Thermococcaceae RepID=Y1172_PYRFU Length = 411 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 72/376 (19%), Positives = 146/376 (38%), Gaps = 55/376 (14%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSP-VSHYRMRAEFRIWHDGDDLYHIIF 64 L Y +QL K +L+ ++ E+ SP + +R R + + + I F Sbjct: 73 LQHINYNSQLEFKKEKLRKILGR----EVEIIPSPRIFGHRNRIDLAVTVNA-----IGF 123 Query: 65 DQQTK--SRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQIDYL 111 ++ K S + V+ P + + + + + ++ LR+ + + Sbjct: 124 REKGKWWSVVDVEECPVFGKTSKKAIERLREYIEEEKVSTWKIREDSGFLRYMVLREGKF 183 Query: 112 TTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDER 171 T + +V+ + + + + + N + + K +++I E Sbjct: 184 T---GEIMVNFVTKEGELPDPTSYFDFADSIYWSINRSKSDVSYGDIEKY-WGKEFIMEE 239 Query: 172 LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN 231 L + Y NSF Q N+ + +++ +G ++++Y G G F + LA+ Sbjct: 240 L----DGVKYLIHPNSFFQTNSYQAVNLVKTVEKFVEG--EKVVDMYSGVGTFGVYLAKK 293 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSY 291 +V+ + ++ A N N+++ + E + Sbjct: 294 GMKVVGFDSNAFAIEMANKNAEINNVEAEFFVASDRE-------------------VDIK 334 Query: 292 QCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQTHKVERLALFD 349 +T+ VDPPR+GL + K + I+Y+SCNP+T N+E L + +E L D Sbjct: 335 GFDTVIVDPPRAGLHPKLVKRLNDHGPETIVYVSCNPKTFKVNIEQL-NNYIIEELIALD 393 Query: 350 QFPYTHHMECGVLLTA 365 FP+T H+E L Sbjct: 394 MFPHTPHIELVGKLRR 409 >UniRef50_UPI00016C01E3 RNA methyltransferase, TrmA family protein n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C01E3 Length = 454 Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats. Identities = 78/386 (20%), Positives = 149/386 (38%), Gaps = 51/386 (13%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVS-HYRMRAEFRIWHDGDD--LYHI 62 L YE QL K+ + ++ + V E+ SP YR + E+ D L Sbjct: 84 LQNLPYEKQLERKLRWVNQIL---NFEVAEILGSPKWFQYRNKMEYTFGDTVKDGPLALG 140 Query: 63 IFDQQTK-SRIRVDSFPAASELINQLMTAMIAG-----------VRNNPVLRHKLFQIDY 110 + ++T + VD + N ++ A + V + L+ + + Sbjct: 141 LHKKRTTFDIVTVDDCKIVDDGFNAILRATLXFFAVXNXPYYKKVSHQGFLKFLVVR--- 197 Query: 111 LTTLSNQAVVSLLYHKKLDDEWRQEAEALRD-------ALRAQNLNVHLIGRATKTKIEL 163 + + +V+++ ++ ++ EA+++ L + + + ++ Sbjct: 198 RSETTGXFLVNIVTSSQIAYDFTAFVEAIKNTGFKIAGVLHTISDSPSDAIKPDSVELLY 257 Query: 164 DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVT-KGSKGDLLELYCGNG 222 +YI E + + ++ SF Q N + AL + + +LY G G Sbjct: 258 GLNYIYEEI----LGLKFKISPFSFFQTNTKGAEVLYANALALLSDLEDKTVFDLYSGTG 313 Query: 223 NFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNR 282 + +A +V+ EI +VAAA+ N N ++N + I Sbjct: 314 TIAQIMALKAKKVVGIEIVAEAVAAAKENAKLNGLENCEFIAGDV--------------- 358 Query: 283 LQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKNLETLSQ-T 339 L ID + I VDPPR G+ + + + + ILYISC +L ++L ++ Sbjct: 359 LTQIDNADVGPDVIVVDPPRDGIHRKALEKIINFGVAEILYISCKATSLARDLVAFAEGG 418 Query: 340 HKVERLALFDQFPYTHHMECGVLLTA 365 + V + D F T+H+E VLL Sbjct: 419 YHVAQSLCVDMFAQTYHVETVVLLKR 444 >UniRef50_A9NFJ7 RNA methyltransferase, TrmA family n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFJ7_ACHLI Length = 451 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 73/388 (18%), Positives = 149/388 (38%), Gaps = 47/388 (12%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSD------LVPEVFRSPVSHYRMRAEFRIWHDGDD 58 + Y A L +K ++ + + + + +YR +A + + Sbjct: 85 QVQHFDYNAMLNQKKDIIKKALDRYVKRYDAHIISDTIGMDNPKNYRNKASLPLRLIDNK 144 Query: 59 LYHIIFDQQTKSRIRVDSFPAASELINQLMTAM-----------IAGVRNNPVLRHKLFQ 107 +F + + + + +++ IN + T M V ++ H + + Sbjct: 145 NRFGMFARNSNAFVPINTCGVQHTKINDIFTTMTSLMDRYHIDAYDPVLQTGIISHAIVR 204 Query: 108 IDYLTTLSNQAVVSLLYHK------KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKI 161 I T N+ V+ + K L E + + + N +V + Sbjct: 205 I---TENLNEVQVTFILSKAFDGLDNLVHELVKLHPEIMSIYKVINPDVRQSYFTEDIHL 261 Query: 162 ELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCG 220 ++ I+E+L + ++F Q N + + + + + +++ Y G Sbjct: 262 IYGKEMIEEQL----GGHTFSLSPDAFFQLNTSQADKFYNEMKRLAQIKPTEIVVDAYAG 317 Query: 221 NGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF 280 S + ++ + A EI + +V +A+ ++ NHIDNV +I E+ + Sbjct: 318 IAPISHYIGQDAKHIYAIEINEDAVKSAKISLDQNHIDNVTVIENNFEDALDNL------ 371 Query: 281 NRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQA--YPRILYISCNPETLCKNLETLSQ 338 K + + + DPPRSGL + + + R++Y SCNP TL K+L L + Sbjct: 372 --------KDIKIDVMLFDPPRSGLGEDVIQTILKYKPKRLVYGSCNPSTLAKDLSLLLE 423 Query: 339 THKVERLALFDQFPYTHHMECGVLLTAK 366 + ++ + D FPYT +E LL K Sbjct: 424 DYDLKHITPIDMFPYTSLVESITLLELK 451 >UniRef50_A5CXB2 RNA methyltransferase, TrmA family n=2 Tax=Gammaproteobacteria RepID=A5CXB2_VESOH Length = 439 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 77/370 (20%), Positives = 149/370 (40%), Gaps = 26/370 (7%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRS----PVSHYRMRAEFRIWH--DGDDL 59 E Q+ K L+ + A + + PE + YR +A I + D + Sbjct: 87 FQNLSSEDQIQIKSRWLKKVFARQAKVEPETWLKSLQFQSWGYRRKARLGIRYVAKKDKV 146 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 ++++ + I + + + + + + + Q + + + S A+ Sbjct: 147 LIGFRERKSSFITNMSRCEVLHPSIGEHLEVLANCIERLSI-KSSIPQFEVVISESGIAL 205 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 + + L+ ++ + L D + N+ + + LD+ I + + Sbjct: 206 IL----RHLESLSVKDEKILADCAQELNITFYTQSGGLDSVKPLDEPTI-LTYSHSNYNI 260 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELYCGNGNFSLALARNFDRVLAT 238 I + F Q N +N QM+ A+++ + ++ +++L+CG GNF+L +AR V+ Sbjct: 261 IMEFLPTDFVQVNFKLNQQMVSLAVELLELNESDKVIDLFCGLGNFTLPIARYAKYVVGI 320 Query: 239 EIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV 298 E V A+YN N I+NV R + + G F K + Sbjct: 321 EGDLGLVERAKYNAEKNSINNVDFYRSD---LCKEVVGFEWF--------KGKTYNKALI 369 Query: 299 DPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKN-LETLSQTHKVERLALFDQFPYTHH 356 DP RSG E + + R++Y+SCNP TL ++ L+ + +E + D FP T H Sbjct: 370 DPSRSGAIEIVELLPKLGVTRLVYVSCNPATLARDTLKLIKLGFTLETAGVIDMFPQTSH 429 Query: 357 MECGVLLTAK 366 +E L + Sbjct: 430 VESIALFVKR 439 >UniRef50_Q1YU49 RNA methyltransferase, TrmA family protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU49_9GAMM Length = 439 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 87/372 (23%), Positives = 153/372 (41%), Gaps = 33/372 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRS----PVSHYRMRAEFRIWHDGDDLYH 61 L + AQ+A K +L + DL PE+ P YR RA + D Sbjct: 89 LQHLDHGAQIAFKQQQLLDSLQRV-DLSPEIILPALSAPQWGYRRRARLAVQRAKDGQII 147 Query: 62 IIFD-QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVV 120 + F ++ + +E + +++ A+ + N P +L +I+ L+ + A+ Sbjct: 148 VGFRNAGSRRIEPITECHVLAEPLPEIVAALPGWMVNFPSG-IRLSEIELLSADNAVAIA 206 Query: 121 SLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKE-M 179 E L + L + K D D+ L V + + Sbjct: 207 IEASRVPSASEREAMLAELT------FTDAQLWWKTEKQTAFKRIDGGDQALHVVLNDRI 260 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD----LLELYCGNGNFSLALARNFDRV 235 + F Q N+ +N QM++ LD+ + + ++L+CG+GNFSL LA FDRV Sbjct: 261 ELQVEPGQFVQVNSEINRQMIDQVLDLVRTPNSERASVAVDLFCGSGNFSLPLAAQFDRV 320 Query: 236 LATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCET 295 + E V AQ N N++ N + + + G+ + + Sbjct: 321 IGIEGLSELVGKAQENAQRNNVSNAEFVVSD-------------LSNWTGMRKIKGKVDL 367 Query: 296 IFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETL-SQTHKVERLALFDQFPY 353 + +DPPRSG +V+ +++YISC+P T+ ++L+ L +K+ + D FP+ Sbjct: 368 VLLDPPRSGAAGVMPWVVKTKAKQVVYISCHPSTMVRDLKVLVEAGYKMIAAGVMDMFPH 427 Query: 354 THHMECGVLLTA 365 T H+E LL Sbjct: 428 TAHVEAIALLEK 439 >UniRef50_A8SMB5 Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SMB5_9FIRM Length = 448 Score = 270 bits (691), Expect = 6e-71, Method: Composition-based stats. Identities = 78/380 (20%), Positives = 164/380 (43%), Gaps = 38/380 (10%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVPE----VFRSPVSHYRMRAEFRIWHDGDDLY 60 H +YE +L K + + + E + +YR + E ++ D + Y Sbjct: 76 HFINLKYEKELELKKKMFLDSLRKNTGIELEDVEILENKNNLNYRNKIELKMNEDFELCY 135 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRH-------KLFQIDYLTT 113 + +S+I++++ P + E IN+ + + A ++ + + L I + Sbjct: 136 CV---DNGESKIKLENCPLSDECINKFLPFLQAKLKEFKINSYDVNTDEGILKNISIRSN 192 Query: 114 LSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQD----YID 169 ++ +++++ K + + ++L + + + +++ K I + Q+ ++ Sbjct: 193 YKSEIMITVVVKKDIVEA-HNFVKSLSEYEKLVSGYINI--NTKKASIIMGQEIKLIFLK 249 Query: 170 ERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLAL 228 + + + SF Q N + + A D G+K LL+LY G G S+ Sbjct: 250 KSFTDKIGKYEFNISPKSFFQVNRFQTENLYKIAKDFLGGNKDKNLLDLYSGIGTTSIYF 309 Query: 229 ARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 288 + NF +V+ E+ K +V A+ N+ N + NV+ + +EE + + L Sbjct: 310 SENFKKVIGVEVVKDAVKDAKENLKLNDVKNVEFLYGKSEEKIEEI-------------L 356 Query: 289 KSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETL-SQTHKVERL 345 K+ + I VDPPR GLD + + +++Y+SCN TL ++L+ +++++ Sbjct: 357 KNNNIDIISVDPPRKGLDKKVVDTIIKSNIKKVVYVSCNGATLTRDLKYFIDGGFELKKV 416 Query: 346 ALFDQFPYTHHMECGVLLTA 365 L D F T H E V + Sbjct: 417 KLCDMFSKTGHCEVVVEIEK 436 >UniRef50_A4BS02 23S rRNA methyltransferase/RumA n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BS02_9GAMM Length = 450 Score = 270 bits (691), Expect = 6e-71, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 138/373 (36%), Gaps = 31/373 (8%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFR----SPVSHYRMRAEFRIWH--DGDDL 59 L + QL K ++ + + P + SP YR +A + + DD Sbjct: 89 LQHLTPQQQLTFKETVVREKLRHMGGVEPSTWLAPLGSPAWGYRRKARLAVKYVAGKDDR 148 Query: 60 YHIIFDQQTKSRI-RVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 + F + + + + S I + + +R + ++ QI+ Sbjct: 149 VLVGFRETHSTLVADLASCRVLDPRIGAHIPQLAETIRCLSIF-DRVPQIEVAAGDQAVG 207 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIG--RATKTKIELDQDYIDERLPVAG 176 +V + L ++ L R + V+ +A+ I + LP Sbjct: 208 LV----FRNLAPFTVEDYRLLSAFARQYDFYVYEQPGDKASVRPIWPRAPQLSYALPDHA 263 Query: 177 KEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELYCGNGNFSLALARNFDRV 235 + + FTQ N A+N ++E A+ + +L+LYCG GNF+ +AR V Sbjct: 264 VSVFFE--PTDFTQVNPAVNHALVERAIALLALQPQDRVLDLYCGLGNFAFCIARQVASV 321 Query: 236 LATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCET 295 + E V A+ N A N I NV R + L+ Sbjct: 322 VGLEGDDALVERARENAARNAITNVVFQRADLSRGIAELAH-----------LQRDGVSR 370 Query: 296 IFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLETLSQ--THKVERLALFDQFP 352 + +DPPRSG + RI+Y+SC P TL ++ L +++ + D FP Sbjct: 371 VLLDPPRSGAAEVLADIAALRAERIVYVSCGPSTLARDAGRLVHEYGYRLAAAGVMDMFP 430 Query: 353 YTHHMECGVLLTA 365 +T H+EC L Sbjct: 431 HTAHVECITLFVR 443 >UniRef50_Q6ANA2 Related to RNA-methyltransferase n=1 Tax=Desulfotalea psychrophila RepID=Q6ANA2_DESPS Length = 444 Score = 270 bits (690), Expect = 7e-71, Method: Composition-based stats. Identities = 86/381 (22%), Positives = 150/381 (39%), Gaps = 38/381 (9%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVP---------EVFRSPVSHYRMRAEFRIWHD 55 +L E QL K ++ + + YR R I Sbjct: 77 NLQHATAELQLEIKEAIVKESLTRSGKPELAKASALIQAPIASPQDFFYRQRIRLHIDEY 136 Query: 56 GDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLS 115 G Q+ I + AS IN+++TA+ + + Q++ + + Sbjct: 137 GR---MGFRQHQSHDIIAIKKCLLASPQINEVLTALEEH-EEHGEICQLASQLELILNPA 192 Query: 116 NQAVVSLLY--HKKLDDEWRQEAEALRDALRAQ------NLNVHLIGRATKTKIELDQDY 167 + V L+Y +K A+ L + + + N L KT E Sbjct: 193 TE-QVQLVYLLKRKSRPADTNRAKRLGEKIASVDCIYFIGENFPLQSAYCKTPEEGKVLS 251 Query: 168 IDER-LPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFS 225 +D + +AGK++ + N F Q N N+QM+E L + +L+L+CG GNFS Sbjct: 252 LDYKPQALAGKKISMQWEVNGFCQVNIKQNVQMIETVLAFADIRDEESVLDLFCGMGNFS 311 Query: 226 LALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG 285 + LA V E ++ +A+ N N +DN + + + + Sbjct: 312 IPLACQAKAVTGFEGQGSAIRSAKKNALNNGLDNCSFYQKPVHKACAELIADKRV----- 366 Query: 286 IDLKSYQCETIFVDPPRSGLDSETEKMVQAY-PRILYISCNPETLCKNLETLS-QTHKVE 343 + + +DPPR G ++ + R++YISC+P TL ++L LS Q +++ Sbjct: 367 -------YDCVIIDPPRQGAPELAGQLAKLCQKRLIYISCDPATLTRDLAELSKQGFQIK 419 Query: 344 RLALFDQFPYTHHMECGVLLT 364 ++ D FP T+H+E VLL Sbjct: 420 KIQPIDMFPQTYHIENVVLLE 440 >UniRef50_Q17NM7 RNA m5u methyltransferase n=7 Tax=Diptera RepID=Q17NM7_AEDAE Length = 625 Score = 269 bits (689), Expect = 9e-71, Method: Composition-based stats. Identities = 72/424 (16%), Positives = 158/424 (37%), Gaps = 72/424 (16%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD--------------------------LVPEVFRS 39 L YE QL +K +++++ L Sbjct: 172 LAYLSYEDQLVQKQSEMRNVLIKLGKEIWKTCPALRPYVEEQRKLHDGLPCKLERIRKSP 231 Query: 40 PVSHYRMRAEFRIWHDGDDLYHIIFDQQT--KSRIRVDS---FPAASELINQLMTAMIAG 94 YR + EF I D + F + + V+S S+ + + Sbjct: 232 QTDGYRNKCEFSIGKDDQGEIRVGFRVGSYSNGFLDVESPQNLKNVSDKMKDTVKFYEEF 291 Query: 95 VRNN--PVLRHKLFQIDYL------TTLSNQAVVSLLYHKK--LDDEWRQEAEALRDALR 144 VRN+ + + +Q + ++ + +V + H + ++E Q +++ + Sbjct: 292 VRNSKLDIYSPETYQGHFRQLTVRTSSSTGDVMVVIGIHPQSLTEEELAQFKDSIVEHFT 351 Query: 145 AQN------LNVHLIGRATK----TKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAA 194 + +++L + T ++ + + + + +R +F Q N Sbjct: 352 SDKGKEIGISSIYLEKIGKRESGQTVNPVEHLHGETHIVDVIHGLKFRISPLAFFQINTP 411 Query: 195 MNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIA 253 + + A+D+ ++ +L++ CG G L A++ +VL E+ ++ A+YN Sbjct: 412 SAEVLYQCAIDLADATQQTSVLDICCGTGTIGLCFAKHCKQVLGVELIPQAIEDAKYNAE 471 Query: 254 ANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV 313 N IDN ++ A++ ++ +++ + VDPPR+GL + + Sbjct: 472 LNKIDNCKLYAGNADDLITSLIRNAN--------IQAGENLVAIVDPPRAGLHVRSITQL 523 Query: 314 QAYP---RILYISCNPETLCKNLETLSQ---------THKVERLALFDQFPYTHHMECGV 361 + R++Y+SC+P + KN L + +++ D FP+T H+E + Sbjct: 524 RNARGLNRLIYVSCSPNSAVKNWVDLMRPCSKAMRGTPFVLKKAIPVDLFPHTPHVELVL 583 Query: 362 LLTA 365 L Sbjct: 584 LFER 587 >UniRef50_B7PPI6 tRNA uracil-5-methyltransferase, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7PPI6_IXOSC Length = 494 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 83/415 (20%), Positives = 143/415 (34%), Gaps = 73/415 (17%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPF-------------------------SDLVPEVFRSP 40 YE QL +K ++ ++ + ++P Sbjct: 79 WWDTPYEQQLQQKQDLVRKVLVKYARKLEATNPALRPWLKQQREAHGGCCPVLPIRASPV 138 Query: 41 VSHYRMRAEFRIWH--DGDDLYHII----FDQQTKSRIRVDSFPAASELINQLMTAMIAG 94 YR + EF + + + Q + S D+ P + Sbjct: 139 TEGYRNKNEFSVGRHLATGEATVGFRLSSYRQGSMSVAPPDALPNVPASAKAVTRCFQEY 198 Query: 95 VRNNPVLRHK-------LFQIDYLTTLSNQAVVSLLYHKK--LDDEWRQEAEALRDALRA 145 VR + Q+ T+ + ++ H + + E +E LR+ + Sbjct: 199 VRQSGKEPFDPESHGGYWRQLTVRTSCEGHVMAIVVIHPQGLTEAEITEEKRKLREFFES 258 Query: 146 QNLNVHLI----------GRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAM 195 V + R + E + + L + + +R ++F Q N Sbjct: 259 GPGQVCGVTSLYLQRFDKKRPEGEQAEFEHLFGTTELEERVRGLSFRVGPDAFFQVNTPA 318 Query: 196 NIQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAA 254 +LE A D+ G + LL++ CG G L +A RV E+ K +V A+ N A Sbjct: 319 AEVLLEVAEDLAALGPRTTLLDVCCGTGTIGLCMAAKVARVYGVEVCKRAVENAKRNAEA 378 Query: 255 NHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ 314 N I N + AE+ + L+ + VDPPR GL ++ + ++ Sbjct: 379 NGIGNASFVLGRAEDTMHDVMHT----------LRDSEDMVAVVDPPRQGLHNKVLRALR 428 Query: 315 A---YPRILYISCNPETLCKNLETLS---------QTHKVERLALFDQFPYTHHM 357 A R++YISCNPE +N L+ Q V + A D FP+T H Sbjct: 429 ATASIKRLVYISCNPEGALQNFLDLARPASNNYRGQPFVVVKAAPVDMFPHTPHC 483 >UniRef50_D0NAM0 tRNA (Uracil-5-)-methyltransferase n=1 Tax=Phytophthora infestans T30-4 RepID=D0NAM0_PHYIN Length = 815 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 75/369 (20%), Positives = 132/369 (35%), Gaps = 44/369 (11%) Query: 36 VFRSPVS-HYRMRAEFRIWHDGDDLYHIIFD-----QQTKSRIRVDSFPAASELINQLMT 89 + SPV+ YR + EF D +D + F + + + D S+ + + Sbjct: 449 IHASPVTEGYRNKCEFSFGFDKEDKPCVGFRLGLFREGSVVVSKPDECINVSKEMKAVCA 508 Query: 90 AMIAGVR-----------NNPVLRHKLFQIDYLTTLSNQ-AVVSLLYHKKLDDEWRQEA- 136 M V + V R + T V+L+ + ++ Sbjct: 509 VMQNIVETSDVPVYSVTTKSGVWRVLTVRQSVSTGELMVMVQVNLVGKTPEERAAVKDLV 568 Query: 137 -EALRDALRAQNLNVHLIGRATKTKIELDQDYIDE-----RLPVAGKEMIYRQVENSFTQ 190 + L D A + I D D ++ +L M + N+F Q Sbjct: 569 VKRLTDESNAFKITSVFIQEYEGLSAPSDNDPVEHVYGKTKLEEHLLGMRFSVSPNAFFQ 628 Query: 191 PNAAMNIQMLEWALDVTKGSKGDLL-ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQ 249 N ++ + LL ++ CG G + + +V+ EI KP+ AQ Sbjct: 629 VNTHGAEKLYSLVKQYANADEHTLLYDVCCGTGTIGICASEGVGKVVGIEICKPATDDAQ 688 Query: 250 YNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSET 309 N N++ NV + AE+ +++ + + K VDPPR+GL Sbjct: 689 VNAILNNVQNVSFVNSKAEDVMKSL-----LQKKRDESEKHLNRVVAIVDPPRAGLHHNV 743 Query: 310 EKMVQAYP---RILYISCNPE-TLCKNLETLSQT---------HKVERLALFDQFPYTHH 356 + ++A P RI+Y+SCNP +L ++ TL + D FP+T H Sbjct: 744 LRALRACPPVERIVYVSCNPTNSLVRDAVTLCGPSTKSLQGQAFEPVHAVPVDMFPHTPH 803 Query: 357 MECGVLLTA 365 E ++ Sbjct: 804 CEMIIVFDR 812 >UniRef50_O66617 Uncharacterized RNA methyltransferase aq_257 n=2 Tax=Aquificaceae RepID=Y257_AQUAE Length = 425 Score = 269 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 85/370 (22%), Positives = 151/370 (40%), Gaps = 33/370 (8%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAPFSDLVP-----EVFRSPVSHYRMRAEFRIWHDGDDL 59 + YE QL K L + + E+ +YR+R +F+I + Sbjct: 80 QIQHLNYEEQLRSKKDILLESLERIGKIKEVPYEGEIPSKKEFNYRVRVQFKIQEN---- 135 Query: 60 YHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAV 119 + K + V+ A E IN+L+ + ++ L+ ++Y T +A Sbjct: 136 RVGFYRWDVKEVVDVEECLLAHERINELIPHIREVLKVIKDLQE--VHVNYSPTRD-EAT 192 Query: 120 VSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEM 179 + + D++ Q L + L + + G+ + E + + + Sbjct: 193 LKFVTITHTDEKLLQNI--LENVLPEWVVGIGDYGK-VGNSLVKRYKVGREHIFMDVGKW 249 Query: 180 IYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATE 239 YR +SF Q N + L+ LD S L+L+CG G F++ L+ + + + Sbjct: 250 QYRVSNDSFFQVNYTLWEDFLKEVLDF-SESYKKGLDLHCGVGFFTIPLSEQGNFIEGAD 308 Query: 240 IAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVD 299 ++ A+YN N+ DNV A + + + VD Sbjct: 309 ANPSAIKDAEYNAKINNRDNVIFEEATAFKHLKRRI--------------GEVINLVVVD 354 Query: 300 PPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLETLSQ-THKVERLALFDQFPYTHH 356 PPRSGL E ++ +I+YISCNP T ++L+ L++ ++++RL L D FP T+H Sbjct: 355 PPRSGLLREERDLLLKNKPDKIVYISCNPTTFARDLKILTKGGYELKRLKLIDNFPQTYH 414 Query: 357 MECGVLLTAK 366 +E LL K Sbjct: 415 IESIALLEVK 424 >UniRef50_B9CLW5 23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLW5_9ACTN Length = 452 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 70/432 (16%), Positives = 137/432 (31%), Gaps = 93/432 (21%) Query: 9 EQYEAQLAEKVVRLQSMMAPFSD-----LVPEVFRSPVSHYRMRAEFRIWHDGDDL-YHI 62 Y QL K ++ ++ P + + +R +A Sbjct: 22 VPYPIQLKRKQQQVVELLGPLGEKFGVSVEDIRGMREPRAFRHKAATPFAPGARGRVRSG 81 Query: 63 IFDQQTKSRIRVDSFPAASELINQLMTAM-----------IAGVRNNPVLRHKLFQIDYL 111 + T + ++ ++ + R +LRH + + Y Sbjct: 82 FYAAGTHRIVTCEACLVEDPRARDILNDVARLASRFNVRAYDEDRGRGILRHAVIRTGYA 141 Query: 112 TTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDY---- 167 T ++ +++L+ + + R+ L L + + L +T L ++ Sbjct: 142 T---DEMLLTLVANGQRLPHEREFISTL-QRLHPEITGIVLNVNQRRTNAILGRETRVLA 197 Query: 168 IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD---------------------- 205 + + SF Q N + AL+ Sbjct: 198 GAATMHDKLLNCTFEIGPTSFYQTNPEQTEVLYRLALEGVFGVCEKSNDERLSSGNSNCH 257 Query: 206 ------------------------VTKGSKGDLLELYCGNGNFSLALARNFD------RV 235 G +L+ YCG G + A+ + Sbjct: 258 TSRDDADFPSSGSSNCHTSRDRADSLSGCPLRILDAYCGTGTIGICAAKEAGSRGIPVEL 317 Query: 236 LATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCET 295 + + + ++A A+ N AN + + + A F + + Sbjct: 318 IGVDQVENNIAMAKRNARANAVS-ARFVCDDATRFIAQ------------EAKRGAPYDV 364 Query: 296 IFVDPPRSGLDSETEKMVQ--AYPRILYISCNPETLCKNLE-TLSQTHKVERLALFDQFP 352 + +DPPR+G K V+ A R++Y+SCN T ++LE L+ +K ER+ D FP Sbjct: 365 VVLDPPRAGSTPTFLKAVEQLAPKRVVYVSCNVVTQARDLEVLLASGYKPERIVPVDMFP 424 Query: 353 YTHHMECGVLLT 364 +T H+E VLL+ Sbjct: 425 HTKHVETVVLLS 436 >UniRef50_C7RHR1 RNA methyltransferase, TrmA family n=5 Tax=Anaerococcus RepID=C7RHR1_ANAPD Length = 457 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 151/395 (38%), Gaps = 56/395 (14%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPF---SDLVPEVFRSPVS-HYRMRAEFRIW--HDGDDL 59 YE +L KV ++++ ++ +SP + YR + E+ G DL Sbjct: 84 YQKLAYETELMLKVDMIKNLFKDNSIDYSGDIKINQSPKTKAYRNKMEYTFGDSKKGGDL 143 Query: 60 YHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVR-----------NNPVLRHKLFQ 107 + Q + + N + ++ A R +LRH + + Sbjct: 144 VLGLHRQNRFYEIVDTTNCNIIDGDFNTIRESVQAYFREKKTDFYHKRTREGLLRHLIIR 203 Query: 108 IDYLTTLSNQAVVSLLYHKKLDDEW------------RQEAEALRDALRAQNLNVHLIGR 155 + T + +V L+ + + N + Sbjct: 204 KAHRT---GEIMVILVTTSDESFDSLRINLFLNKLLSIDLVGKIVSVYHVINDSPADAVI 260 Query: 156 ATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DL 214 K + +++I E + + + SF QPN ++ + A D+ ++ D+ Sbjct: 261 VEKLNLIYGKEFIKEEM----LGLTFNISPFSFFQPNIYTAEKLYQKAFDLANINQSMDV 316 Query: 215 LELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAM 274 L+LY G G + +A+ EI + ++ A N N IDN+ + Sbjct: 317 LDLYSGTGTITQVMAQRARTATGIEIVEEAIDKAWENAKINEIDNINFLCGDV------- 369 Query: 275 NGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAY--PRILYISCNPETLCKN 332 L+ I+ + + I +DPPR+G+ ++ + + + +YISCNP+T +N Sbjct: 370 --------LEEIEKVGDKYDVIILDPPRAGISPKSLEKILKIDTEKFIYISCNPKTQVEN 421 Query: 333 LETL-SQTHKVERLALFDQFPYTHHMECGVLLTAK 366 L+ +Q +++ ++DQFP + H+E LLT K Sbjct: 422 LKEFINQGFEIKDYEIYDQFPKSRHLEAIALLTRK 456 >UniRef50_C2L0H1 TrmA family RNA methyltransferase n=1 Tax=Oribacterium sinus F0268 RepID=C2L0H1_9FIRM Length = 400 Score = 267 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 71/379 (18%), Positives = 132/379 (34%), Gaps = 68/379 (17%) Query: 46 MRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRN-------- 97 + E DL + + I S ++ + R Sbjct: 28 NKIE--AKEKSSDLSMGFYGFHSHRIIETKDCLINSAENPLILNCIKEWAREYKISGYEE 85 Query: 98 ---NPVLRHKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDAL----------- 143 +LRH + + T + ++ L+ + K ++ E L+ L Sbjct: 86 ETGKGLLRHIFLRKGFST---GEILLCLVLNGKSLPHGKELWENLQGLLLSAEEGDLQRE 142 Query: 144 ------------------RAQNLNVHLIGR-------------ATKTKIELDQDYIDERL 172 + + ++G +T +D I++++ Sbjct: 143 EDVSCGMDAQSQEDVYCGKNGTVQGSIVGLCVNINEGSGNAILGRETLCLYGKDSIEDKI 202 Query: 173 PVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-LLELYCGNGNFSLALARN 231 E+ + SF Q N ++ AL+ + + + + YCG G SL LA+ Sbjct: 203 ----GELSFSISVPSFYQVNPVQTEKIYGKALEYAALTGEETVWDCYCGIGTISLFLAQK 258 Query: 232 FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGV--REFNRLQGIDLK 289 +V EI ++ A+ N N + N + AAEE RE + Sbjct: 259 AKQVYGLEIVPEAIENAKKNAEKNGLQNAEFFVGAAEEVLPKWVEEQKRELSAKGADCGI 318 Query: 290 SYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLCKNLETLSQ-THKVERLA 346 + + +DPPR G D V + RI+Y+SC+P +L ++++ L + + +E+ Sbjct: 319 GDMVDVVSLDPPRKGCDEACLSAVLELSPKRIVYVSCDPGSLARDIKYLGEGGYVLEKWV 378 Query: 347 LFDQFPYTHHMECGVLLTA 365 D FP T H+E LL Sbjct: 379 GIDNFPRTGHVETIALLQK 397 >UniRef50_C6DDJ9 23S rRNA (uracil-5-)-methyltransferase rumA n=131 Tax=Enterobacteriaceae RepID=RUMA_PECCP Length = 449 Score = 266 bits (681), Expect = 7e-70, Method: Composition-based stats. Identities = 74/376 (19%), Positives = 140/376 (37%), Gaps = 36/376 (9%) Query: 4 EHLPTEQYEAQLAEKVVRLQSMMAPFSD---LVPEVFRSPVSHYRMRAEFRIWHDGDDLY 60 + Q + K L +M + + YR RA ++ + Sbjct: 96 QQ-QHADITLQQSSKTAALMRLMTRETGAELPDASLIAGTPYAYRRRARLALYFQAKEQR 154 Query: 61 HIIFDQ--QTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQA 118 ++ + + + + + P + L+ + + ++ +L ++ + + Sbjct: 155 LLMGYRQSNSHDLVDIKACPVLRPELEALLQPLRDCLSRLKAVK-RLGHVELVQAENGPL 213 Query: 119 VVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKE 178 +V + LD + +ALRD Q ++V+L A + + Sbjct: 214 LVL----RHLDPLHPADEQALRDFAEQQGVSVYLAPDADSLTCLHGDEPVYL-----VAG 264 Query: 179 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSK-GDLLELYCGNGNFSLALARNFDRVLA 237 + F Q N A+N QM+ AL +L+L+CG GNF+L LA+ V+ Sbjct: 265 LTLAFSPRDFIQVNDAVNQQMVAQALAWLDVQPQDRILDLFCGMGNFTLPLAQRAASVVG 324 Query: 238 TEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIF 297 E V + N N + NV E+ + + I Sbjct: 325 VEGVTALVEKGRENARRNALSNVTFFHQNLEDDVTQ------------QPWVAQGFDKIL 372 Query: 298 VDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLE-TLSQTHKVERLALFDQFPYTH 355 +DP R+G E++ + A R++Y+SCN TL ++ + L+ + +A+ D FP+T Sbjct: 373 LDPARAGAAGVMEQITRLAPKRVVYVSCNATTLARDSKVLLAAGFTLVNVAMLDMFPHTG 432 Query: 356 HMECGVLL-----TAK 366 H+E L T K Sbjct: 433 HLESMALFLHDTGTRK 448 >UniRef50_C1MLF0 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MLF0_9CHLO Length = 549 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 78/419 (18%), Positives = 144/419 (34%), Gaps = 63/419 (15%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSD-------LVPEVFRSPVSHYRMRAEFRIWHDGD- 57 Y+ QLA K ++ +M + + YR + EF GD Sbjct: 124 WLDVAYDQQLAFKRDQVVDVMTRIARINDADRIVNAISPSQQRLRYRNKMEFAFAQVGDN 183 Query: 58 --DLYHIIFDQQTKSRIRVDSF--------PAASELINQLMTAMIAGV------------ 95 V+ F A +++ + + A Sbjct: 184 SSGRPAFGLRPAGDHTGLVEVFTSGCVLQQVVADKVLARCAAHLHAMADVSALLPVFNRR 243 Query: 96 RNNPVLRHKLFQIDYLTTL-SNQAVVSLLYHKKLDDEWRQEAEALR---------DALRA 145 VLR + L S + V ++ LD + ++ +A D +++ Sbjct: 244 TGCGVLRSLTLRTAPLAGRCSGETAVMVIIAAALDRQGKETKKAFAALAADLATIDCVQS 303 Query: 146 QNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALD 205 + + I L + +++ SF Q N ++E + Sbjct: 304 VVHERVGDNNENQITVLHGPATISITL----RGVVFALSVKSFFQTNTKQAEILVESVEE 359 Query: 206 VTKGS---KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQI 262 + +L+L+CG G F L LA V EI +V A+ N AN I+N Sbjct: 360 ACALTGENTETILDLFCGVGTFGLCLASKARHVYGCEIVPEAVEDAKRNAVANRIENATF 419 Query: 263 IRMAAEEFTQAM--NGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ--AYPR 318 + + +++M + ++ + + + VDP RSG+D +++ PR Sbjct: 420 WQADLAQLSESMLCADSKSMSKSIVFGKDVVRPDVVIVDPARSGMDVTLVAILRSLGIPR 479 Query: 319 ILYISCNPETLCKNLETLS------------QTHKVERLALFDQFPYTHHMECGVLLTA 365 I+Y+SCNP T +++ L +++ D FP+T H+E V+L Sbjct: 480 IVYVSCNPATQARDVALLCDVSDNTQSGDLLAKYRLISCIPVDLFPHTPHVENIVVLER 538 >UniRef50_Q47WQ1 23S rRNA (uracil-5-)-methyltransferase rumA n=1 Tax=Colwellia psychrerythraea 34H RepID=RUMA_COLP3 Length = 469 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 91/391 (23%), Positives = 161/391 (41%), Gaps = 49/391 (12%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAP---FSDLVPEV----------FRSPVSHYRMRAEFRI 52 L E QL K ++ + + ++ PE+ +S HYR +A + Sbjct: 93 LQMLALEEQLLFKQQKITDLFSRSFSTQNITPEINTAHLPWQAAIKSSPWHYRRKARIGV 152 Query: 53 WHDGDDLYHIIFDQQT-KSRIRVDSFPAASELINQLMTAMIAGVRN----NPVLRHKLFQ 107 D + I F Q++ + S P E ++ + + + + + ++ Q Sbjct: 153 QFDKNAQATIGFRQKSTNQLAAIKSCPVLVEPLSAIFPLLKKLLAQLTVKSAIGHIEVIQ 212 Query: 108 IDYLTTL-------SNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK 160 D T NQ VV + K ++D + L AQ H+I + Sbjct: 213 ADISDTSSADKIQKDNQVVVVVRQLKPMNDTDIGLWQ-----LYAQRHCWHVIIDDGNKQ 267 Query: 161 IEL----DQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTK-GSKGDLL 215 + L D + + +Y N F Q N +N M+ AL + ++L Sbjct: 268 LPLADIKGGDSFELSYELTDTSKVY-FSSNDFIQINHQVNNAMISQALAWLNILATDNVL 326 Query: 216 ELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMN 275 +L+CG GNFSLALA++ RV+ E + V A N N +DN Q + Sbjct: 327 DLFCGLGNFSLALAKHAKRVVGVEGMQTMVDKATQNSLVNGLDNCQFYQADLNS------ 380 Query: 276 GVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPETLCKNLE 334 + L ++ + + +DP R+G + ++ + P +LY+SC+P TL ++ Sbjct: 381 -----HWLLEPWVQGQVFDKVLLDPARAGAEQAVSQIAELKIPCVLYVSCDPATLARDSA 435 Query: 335 TL-SQTHKVERLALFDQFPYTHHMECGVLLT 364 L S+ +K+E+++L D F T H+E +L T Sbjct: 436 ILVSKGYKLEKISLMDMFSQTKHVETMILFT 466 >UniRef50_C7NBA6 RNA methyltransferase, TrmA family n=6 Tax=Fusobacteriaceae RepID=C7NBA6_LEPBD Length = 474 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 65/396 (16%), Positives = 150/396 (37%), Gaps = 56/396 (14%) Query: 8 TEQYEAQLAEKVVRLQSMMAPFSDLVP-------EVFRSPVSHYRMRAEFRIWHDGDDLY 60 +YE QL K L+ ++ +++ + +YR + + + Sbjct: 92 MLKYEKQLEYKDKMLEEVLTKIAEIDLKKVKISKIIGSDKKINYRNKTAEPFFKKNGIIQ 151 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHK------------LFQI 108 + +++ + SE+ ++ + V + + + L QI Sbjct: 152 TGFYSRKSHNVFSAKESLLKSEIAKIIIDKFLQKVNSFAGTKKEFKVFNEVNNTGFLKQI 211 Query: 109 DYLTTLSNQAVVSLLYHK--------KLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK 160 ++ ++ ++ +K K+ +E E + ++ + + + K Sbjct: 212 MIRNNEKDEVMIVVVVNKNSQYNQLSKVLEEMYDENDCIKSIYISVKTEQNNVILG-KNV 270 Query: 161 IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-------- 212 Y++E + + ++ NSF Q N +++ + A++ Sbjct: 271 HLFGSQYLEEEME----GLKFKIYPNSFFQINKKQALKLYDAAINFLNEENKNIDKIYEK 326 Query: 213 DLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ 272 +++ + G G ++ L++N +V+ E + S AA+ N I NV+ + E+ Sbjct: 327 TVIDAFSGTGTIAMMLSKNIKKVIGIESIESSTLAAKLTSYENSIQNVEFVNGKVEKELP 386 Query: 273 AMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV--QAYPRILYISCNPETLC 330 + + I DPPR G++ K V +I+YISCNP T Sbjct: 387 KILKREDVG-------------AIVFDPPRRGIEESALKSVVKNKIEKIVYISCNPATFA 433 Query: 331 KNLETLSQ-THKVERLALFDQFPYTHHMECGVLLTA 365 ++++ L++ + + ++A D FP T H+E ++ Sbjct: 434 RDVKILAENGYVLRKVAPVDMFPQTGHIEVVGMIQR 469 >UniRef50_B1X3H7 23S rRNA methyltransferase/RumA n=1 Tax=Paulinella chromatophora RepID=B1X3H7_PAUCH Length = 448 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 88/382 (23%), Positives = 151/382 (39%), Gaps = 42/382 (10%) Query: 6 LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFR----SPVSHYRMRAEFRIWHDGDD-LY 60 L + +AQ+A K + + S + +V + YR +A + L Sbjct: 84 LQSINEQAQVAWKQHYVSETLNRLSGIEVKVLPLLITNEPIKYRNKALIPLEQTSSGWLR 143 Query: 61 HIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVR--NNPVLRHKLFQIDYLTT----L 114 + + + + +D+ P I+ L+ + A + + P+ H L I +L L Sbjct: 144 AGFYRRASHQIVNMDNCPLLDPRIDTLVEPIKADLETSHWPIDIHSLNGIRHLCLKVGIL 203 Query: 115 SNQAVVSLLYH-------KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDY 167 +N+ +++L+ KL W Q + N+ + + TK + + Sbjct: 204 TNEIIITLVSSHDRMPGISKLAQHWMQRWPQVVGVCLNLQPNLDNVAIGSSTKTIAGRPW 263 Query: 168 IDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKG-DLLELYCGNGNFSL 226 + ER + R ++F Q N + + + + S G +L+ Y G G SL Sbjct: 264 LIERF----CNLNLRIASDTFFQINTLQAERAVNFLASILNVSTGPKILDAYSGVGTLSL 319 Query: 227 ALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGI 286 LA VL E+ SV A+ N N I + + + E Sbjct: 320 PLAAAGANVLGLELRYSSVIHARLNAKLNSITSARFEHVDVAEAL--------------- 364 Query: 287 DLKSYQCETIFVDPPRSGLDSETEKMVQAYP--RILYISCNPETLCKNLET--LSQTHKV 342 L + + VDPPR GL+ E K + A P + +Y+SCNP TL ++L L+ KV Sbjct: 365 ALHLPSSDALIVDPPRKGLELEVIKQIIANPADQTVYLSCNPSTLARDLRLLTLAGNIKV 424 Query: 343 ERLALFDQFPYTHHMECGVLLT 364 + D FP T H+EC +L Sbjct: 425 TFIQPIDFFPKTTHVECLTILE 446 >UniRef50_D2V0R2 S-adenosylmethionine-dependent methyltransferase n=1 Tax=Naegleria gruberi RepID=D2V0R2_NAEGR Length = 580 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 78/446 (17%), Positives = 147/446 (32%), Gaps = 93/446 (20%) Query: 5 HLPTEQYEAQLAEKVVRLQSMMAP----------------FSDLVPE------------- 35 L YE QL +K M + + PE Sbjct: 141 PLAHLTYEEQLVKKEGETLDCMREMFSEIKKSYGTAELPEYYTIQPEDEKLKDVHLTWCG 200 Query: 36 VFRSPVS-HYRMRAEFRIWHDGDDLYHIIFDQQ--TKSRIRVD---SFPAASELINQLMT 89 + SP + YR EF ++ +D + F Q ++ + S+ + + + Sbjct: 201 ILSSPQTEGYRNNCEFTCGYNSEDKPTVGFRQGLFSQGIFNAESPKDVKIVSDSMKRAVL 260 Query: 90 AMIAGVRNNPVL--------RHKLFQID-YLTTLSNQAVVSLLYHKKLDDEWRQEAEALR 140 + + + L+++ + + ++ + + + + + ++ Sbjct: 261 VLQKFIEQHHDTYKCYAQKTHTGLWRLMKVRENRNGEMLIIVQIN--PTEISEEAMQTIK 318 Query: 141 DALRAQ----------NLNVHL----------IGRATKTKIELDQDYIDERLPVAGKEMI 180 L + +L++++ + A T LD Y ++ + + Sbjct: 319 TNLISHFKSFDKNESSDLSINVKGLFLQQHTGVSNAAPTDAPLDLLYGEQTIVEEVLGLK 378 Query: 181 YRQVENSFTQPNAAMNIQMLEWALDVTKGSKGD-------LLELYCGNGNFSLALARNFD 233 + SF Q N + + T S LL++ G G +A + Sbjct: 379 FNISPMSFFQVNTKGVEVLYSKVKEWTLESMDKESNKERVLLDVCSGTGTIGSTMASSVS 438 Query: 234 RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQC 293 RV+ E+ + SV A+ N N+I N+ + AE+ N Sbjct: 439 RVIGIEMVESSVNDARKNAQLNNIQNITFVCGKAEDTITTKMVEHNLNSSNVEC------ 492 Query: 294 ETIFVDPPRSGLDSETEKMVQAYPRI---LYISCNPETLCKNLETLSQT----------H 340 VDPPRSGL + + + P I +Y+SCNP+TL +N L Sbjct: 493 -VAVVDPPRSGLHKKVLESILRSPTIEKLIYVSCNPKTLVENAIRLCGPTSTVRASYGAF 551 Query: 341 KVERLALFDQFPYTHHMECGVLLTAK 366 K + D FP+T H E + K Sbjct: 552 KPVKAIAVDMFPHTEHCEMICVFERK 577 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.151 0.466 Lambda K H 0.267 0.0464 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,142,766,783 Number of Sequences: 3077464 Number of extensions: 89531174 Number of successful extensions: 311850 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 3708 Number of HSP's successfully gapped in prelim test: 5779 Number of HSP's that attempted gapping in prelim test: 296704 Number of HSP's gapped (non-prelim): 10187 length of query: 366 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 236 effective length of database: 640,326,036 effective search space: 151116944496 effective search space used: 151116944496 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 94 (40.6 bits)