19/01/2012 05:00:11 : INFO  : Run start: Thu Jan 19 05:00:10 GMT 2012
19/01/2012 05:00:17 : INFO  : Initialised job
19/01/2012 05:00:18 : INFO  : Renaming log file 'phyre2_20120119_050010.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/0ca69579bc30f76f/phyre_20120119_050010.log'
19/01/2012 05:00:19 : INFO  : Initialised job:
Sequence
>batch____
MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAI
AGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTA
MPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGI
FTLSLVLIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPL
WISSELGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIF
FNSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQG
AIAQSWGHFAVYWVIAVISVVALFLTAKVKDV

19/01/2012 05:00:20 : INFO  : Checked sequence
19/01/2012 05:00:23 : INFO  : Finding homologues with PSI-BLAST
19/01/2012 05:00:25 : INFO  : PSI-BLAST 3 iterations
19/01/2012 05:03:52 : INFO  : PSI-BLAST 5 iterations
19/01/2012 05:11:04 : INFO  : Finished PSI-BLAST
19/01/2012 05:11:06 : INFO  : Running Buildali to generate a3m file
19/01/2012 06:02:19 : INFO  : Converting to HMM
19/01/2012 06:03:28 : INFO  : Calibrating HMM
19/01/2012 06:03:45 : INFO  : Searching HMM database
19/01/2012 06:13:49 : INFO  : Finished buildali
19/01/2012 06:13:50 : INFO  : Predicting secondary structure
19/01/2012 06:13:59 : INFO  : Predicted secondary structure (PSI-Pred)
19/01/2012 06:14:00 : INFO  : Predicting Disordered regions
19/01/2012 06:14:03 : INFO  : Predicted Disorder (Disopred)
19/01/2012 06:14:05 : INFO  : Running memsat_svm check
19/01/2012 06:16:15 : INFO  : Running memsat_svm full
19/01/2012 06:20:02 : INFO  : Predicted Transmembrane (memsat_svm) ID '0ca69579bc30f76f'
19/01/2012 06:20:03 : INFO  : Initialising fold library search
19/01/2012 06:20:07 : INFO  : Initialised search input
19/01/2012 06:20:08 : INFO  : Building Ensemble models
19/01/2012 06:20:13 : INFO  : Building hh.d1pv7a_.model.1.pdb
19/01/2012 06:20:27 : INFO  : Building hh.d1pw4a_.model.2.pdb
19/01/2012 06:20:42 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0ca69579bc30f76f/hh.d1pw4a_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0ca69579bc30f76f/d1pw4a_.2.pdb
19/01/2012 06:20:48 : INFO  : Building hh.c2gfpA_.model.3.pdb
19/01/2012 06:20:56 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0ca69579bc30f76f/hh.c2gfpA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0ca69579bc30f76f/c2gfpA_.3.pdb
19/01/2012 06:21:00 : INFO  : Building hh.c3o7pA_.model.4.pdb
19/01/2012 06:21:08 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0ca69579bc30f76f/hh.c3o7pA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0ca69579bc30f76f/c3o7pA_.4.pdb
19/01/2012 06:21:13 : INFO  : Building d1pv7a_.1.pdb
19/01/2012 06:21:24 : INFO  : Building d1pw4a_.2.pdb
19/01/2012 06:21:37 : INFO  : Building c2gfpA_.3.pdb
19/01/2012 06:21:50 : INFO  : Building c3o7pA_.4.pdb
19/01/2012 06:22:04 : INFO  : Building c2xutC_.5.pdb
19/01/2012 06:22:18 : INFO  : Building c2g9pA_.6.pdb
19/01/2012 06:22:30 : INFO  : Building c2w8aC_.7.pdb
19/01/2012 06:22:42 : INFO  : Building c2jlnA_.8.pdb
19/01/2012 06:22:58 : INFO  : Building d2fnoa1.9.pdb
19/01/2012 06:23:15 : INFO  : Building c2hg5D_.10.pdb
19/01/2012 06:23:29 : INFO  : Building c2xzmO_.11.pdb
19/01/2012 06:23:40 : INFO  : Building c2k10A_.12.pdb
19/01/2012 06:23:50 : INFO  : Building d1u69a_.13.pdb
19/01/2012 06:24:00 : INFO  : Building c3izbO_.14.pdb
19/01/2012 06:24:09 : INFO  : Building c2inpD_.15.pdb
19/01/2012 06:24:18 : INFO  : Building d2ox6a1.16.pdb
19/01/2012 06:24:32 : INFO  : Building c2k9pA_.17.pdb
19/01/2012 06:24:44 : INFO  : Building d2eyqa6.18.pdb
19/01/2012 06:24:56 : INFO  : Building d1kska3.19.pdb
19/01/2012 06:25:08 : INFO  : Building c2qsrA_.20.pdb
19/01/2012 06:26:18 : INFO  : Finished HH model building
19/01/2012 06:26:19 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
19/01/2012 06:27:12 : INFO  : html domain output complete ID '0ca69579bc30f76f'
19/01/2012 07:00:36 : INFO  : Run end  : Thu Jan 19 07:00:35 GMT 2012
