Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	D	K	S	A	F	V	H	P	T	A	I	V	E	E	G	A	S	I	G	A	N	A	H	I	G	P	F	C	I	V	G	P	H	V	E	I	G	E	G	T	V	L	K	S	H	V	V	V	N	G	H	T	K	I	G	R	D	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	I	Y	Q	F	A	S	I	G	E	V	N	Q	D	L	K	Y	A	G	E	P	T	R	V	E	I	G	D	R	N	R	I	R	E	S	V	T	I	H	R	G	T	V	Q	G	G	G	L	T	K	V	G	S	D	N	L	L	M	I	N
Secondary structure
SS confidence
Disorder																																												?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	H	I	A	H	D	C	T	V	G	N	R	C	I	L	A	N	N	A	T	L	A	G	H	V	S	V	D	D	F	A	I	I	G	G	M	T	A	V	H	Q	F	C	I	I	G	A	H	V	M	V	G	G	C	S	G	V	A	Q	D
Secondary structure
SS confidence
Disorder																																																									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	P	P	Y	V	I	A	Q	G	N	H	A	T	P	F	G	V	N	I	E	G	L	K	R	R	G	F	S	R	E	A	I	T	A	I	R	N	A	Y	K	L	I	Y	R	S	G	K	T	L	D	E	V	K	P	E	I	A	E	L	A
Secondary structure
SS confidence
Disorder																		?								?																				?	?	?	?										?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Sequence		E	T	Y	P	E	V	K	A	F	T	D	F	F	A	R	S	T	R	G	L	I	R
Secondary structure
SS confidence
Disorder		?	?															?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jf2 chain A domain 1 Region: 1 - 262 Aligned: 262 Modelled: 262 Confidence: 100.0% Identity: 100% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: UDP N-acetylglucosamine acyltransferase Phyre2 PDB 3i3a chain C Region: 6 - 262 Aligned: 256 Modelled: 257 Confidence: 100.0% Identity: 41% PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa Phyre2 PDB 1j2z chain A Region: 6 - 261 Aligned: 255 Modelled: 256 Confidence: 100.0% Identity: 40% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: UDP N-acetylglucosamine acyltransferase Phyre2 PDB 3r0s chain A Region: 7 - 262 Aligned: 250 Modelled: 256 Confidence: 100.0% Identity: 36% PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni Phyre2 PDB 2iu9 chain C Region: 4 - 232 Aligned: 222 Modelled: 229 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii) Phyre2 PDB 3pmo chain A Region: 4 - 236 Aligned: 216 Modelled: 219 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase; PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution Phyre2 PDB 3eh0 chain C Region: 2 - 232 Aligned: 221 Modelled: 231 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli Phyre2 PDB 3fsb chain B Region: 7 - 228 Aligned: 220 Modelled: 222 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: B: PDB Molecule:qdtc; PDBTitle: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-2 glucose n-acetyl transferase from thermoanaerobacterium3 thermosaccharolyticum in complex with coa and dtdp-3-amino-4 quinovose Phyre2 PDB 1g97 chain A domain 1 Region: 6 - 197 Aligned: 188 Modelled: 190 Confidence: 100.0% Identity: 19% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: GlmU C-terminal domain-like Phyre2 PDB 1mr7 chain A Region: 2 - 241 Aligned: 192 Modelled: 194 Confidence: 100.0% Identity: 18% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: Galactoside acetyltransferase-like Phyre2 PDB 3c8v chain A Region: 2 - 198 Aligned: 188 Modelled: 185 Confidence: 100.0% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_390128.1) from2 desulfovibrio desulfuricans g20 at 2.28 a resolution Phyre2 PDB 2oi6 chain A domain 1 Region: 6 - 203 Aligned: 192 Modelled: 198 Confidence: 100.0% Identity: 14% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: GlmU C-terminal domain-like Phyre2 PDB 3mqh chain D Region: 3 - 198 Aligned: 156 Modelled: 156 Confidence: 100.0% Identity: 29% PDB header:transferase Chain: D: PDB Molecule:lipopolysaccharides biosynthesis acetyltransferase; PDBTitle: crystal structure of the 3-n-acetyl transferase wlbb from bordetella2 petrii in complex with coa and udp-3-amino-2-acetamido-2,3-dideoxy3 glucuronic acid Phyre2 PDB 1hm8 chain A Region: 3 - 205 Aligned: 197 Modelled: 203 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a Phyre2 PDB 3jqy chain B Region: 4 - 232 Aligned: 203 Modelled: 212 Confidence: 99.9% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystal strucutre of the polysia specific acetyltransferase neuo Phyre2 PDB 2wlg chain A Region: 11 - 205 Aligned: 179 Modelled: 191 Confidence: 99.9% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy Phyre2 PDB 1xat chain A Region: 4 - 255 Aligned: 180 Modelled: 189 Confidence: 99.9% Identity: 21% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: Galactoside acetyltransferase-like Phyre2 PDB 3cj8 chain B Region: 2 - 196 Aligned: 130 Modelled: 130 Confidence: 99.9% Identity: 27% PDB header:transferase Chain: B: PDB Molecule:2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate n-2 succinyltransferase from enterococcus faecalis v583 Phyre2 PDB 2v0h chain A Region: 10 - 204 Aligned: 189 Modelled: 195 Confidence: 99.9% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu) Phyre2 PDB 2f9c chain A domain 1 Region: 2 - 197 Aligned: 192 Modelled: 196 Confidence: 99.9% Identity: 15% Fold: Single-stranded left-handed beta-helix Superfamily: Trimeric LpxA-like enzymes Family: YdcK-like Phyre2 1 d2jf2a1 2 c3i3aC_ 3 d1j2za_ 4 c3r0sA_ 5 c2iu9C_ 6 c3pmoA_ 7 c3eh0C_ 8 c3fsbB_ 9 d1g97a1 10 d1mr7a_ 11 c3c8vA_ 12 d2oi6a1 13 c3mqhD_ 14 c1hm8A_ 15 c3jqyB_ 16 c2wlgA_ 17 d1xata_ 18 c3cj8B_ 19 c2v0hA_ 20 d2f9ca1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d2jf2a1 100.0 100 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 2 c3i3aC_ 100.0 41 PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa 3 d1j2za_ 100.0 40 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 4 c3r0sA_ 100.0 36 PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni 5 c2iu9C_ 100.0 21 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii) 6 c3pmoA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase; PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution 7 c3eh0C_ 100.0 24 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli 8 c3fsbB_ 100.0 21 PDB header:transferase Chain: B: PDB Molecule:qdtc; PDBTitle: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-2 glucose n-acetyl transferase from thermoanaerobacterium3 thermosaccharolyticum in complex with coa and dtdp-3-amino-4 quinovose 9 d1g97a1 100.0 19 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 10 d1mr7a_ 100.0 18 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 11 c3c8vA_ 100.0 14 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_390128.1) from2 desulfovibrio desulfuricans g20 at 2.28 a resolution 12 d2oi6a1 100.0 14 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 13 c3mqhD_ 100.0 29 PDB header:transferase Chain: D: PDB Molecule:lipopolysaccharides biosynthesis acetyltransferase; PDBTitle: crystal structure of the 3-n-acetyl transferase wlbb from bordetella2 petrii in complex with coa and udp-3-amino-2-acetamido-2,3-dideoxy3 glucuronic acid 14 c1hm8A_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a 15 c3jqyB_ 99.9 20 PDB header:transferase Chain: B: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystal strucutre of the polysia specific acetyltransferase neuo 16 c2wlgA_ 99.9 16 PDB header:transferase Chain: A: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy 17 d1xata_ 99.9 21 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 18 c3cj8B_ 99.9 27 PDB header:transferase Chain: B: PDB Molecule:2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate n-2 succinyltransferase from enterococcus faecalis v583 19 c2v0hA_ 99.9 17 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu) 20 d2f9ca1 99.9 15 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:YdcK-like 21 c3eevC_ not modelled 99.9 18 PDB header:transferase Chain: C: PDB Molecule:chloramphenicol acetyltransferase; PDBTitle: crystal structure of chloramphenicol acetyltransferase vca0300 from2 vibrio cholerae o1 biovar eltor 22 c2oi6A_ not modelled 99.9 16 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4 23 d3bswa1 not modelled 99.9 26 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:PglD-like 24 c3ectA_ not modelled 99.9 24 PDB header:transferase Chain: A: PDB Molecule:hexapeptide-repeat containing-acetyltransferase; PDBTitle: crystal structure of the hexapeptide-repeat containing-2 acetyltransferase vca0836 from vibrio cholerae 25 c3fttA_ not modelled 99.9 21 PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase sacol2570; PDBTitle: crystal structure of the galactoside o-acetyltransferase2 from staphylococcus aureus 26 d1krra_ not modelled 99.9 22 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 27 c3srtB_ not modelled 99.9 26 PDB header:transferase Chain: B: PDB Molecule:maltose o-acetyltransferase; PDBTitle: the crystal structure of a maltose o-acetyltransferase from2 clostridium difficile 630 28 c2ic7A_ not modelled 99.9 22 PDB header:transferase Chain: A: PDB Molecule:maltose transacetylase; PDBTitle: crystal structure of maltose transacetylase from2 geobacillus kaustophilus 29 c3r3rA_ not modelled 99.9 20 PDB header:transferase Chain: A: PDB Molecule:ferripyochelin binding protein; PDBTitle: structure of the yrda ferripyochelin binding protein from salmonella2 enterica 30 d1qrea_ not modelled 99.9 13 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 31 c1qreA_ not modelled 99.9 13 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: a closer look at the active site of gamma-carbonic anhydrases: high2 resolution crystallographic studies of the carbonic anhydrase from3 methanosarcina thermophila 32 d1xhda_ not modelled 99.9 21 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 33 d1ocxa_ not modelled 99.9 30 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like 34 d1v3wa_ not modelled 99.9 20 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like 35 c3eg4A_ not modelled 99.9 21 PDB header:transferase Chain: A: PDB Molecule:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase from brucella melitensis3 biovar abortus 2308 36 c3r1wA_ not modelled 99.9 15 PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: crystal structure of a carbonic anhydrase from a crude oil degrading2 psychrophilic library 37 d1t3da_ not modelled 99.9 31 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 38 c1t3dB_ not modelled 99.9 31 PDB header:transferase Chain: B: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a 39 d1ssqa_ not modelled 99.9 29 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase 40 c3ixcA_ not modelled 99.9 20 PDB header:transferase Chain: A: PDB Molecule:hexapeptide transferase family protein; PDBTitle: crystal structure of hexapeptide transferase family protein from2 anaplasma phagocytophilum 41 c3mc4A_ not modelled 99.9 25 PDB header:transferase Chain: A: PDB Molecule:ww/rsp5/wwp domain:bacterial transferase PDBTitle: crystal structure of ww/rsp5/wwp domain: bacterial2 transferase hexapeptide repeat: serine o-acetyltransferase3 from brucella melitensis 42 d3tdta_ not modelled 99.8 24 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD 43 c2ggqA_ not modelled 99.8 15 PDB header:transferase Chain: A: PDB Molecule:401aa long hypothetical glucose-1-phosphate PDBTitle: complex of hypothetical glucose-1-phosphate thymidylyltransferase from2 sulfolobus tokodaii 44 c3q1xA_ not modelled 99.8 30 PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of entamoeba histolytica serine acetyltransferase 12 in complex with l-serine 45 c3f1xA_ not modelled 99.8 31 PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: three dimensional structure of the serine acetyltransferase from2 bacteroides vulgatus, northeast structural genomics consortium target3 bvr62. 46 c3kwdA_ not modelled 99.7 18 PDB header:lyase, protein binding, photosynthesis Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein; PDBTitle: inactive truncation of the beta-carboxysomal gamma-carbonic anhydrase,2 ccmm, form 1 47 c3fsyC_ not modelled 99.6 16 PDB header:transferase Chain: C: PDB Molecule:tetrahydrodipicolinate n-succinyltransferase; PDBTitle: structure of tetrahydrodipicolinate n-succinyltransferase2 (rv1201c;dapd) in complex with succinyl-coa from mycobacterium3 tuberculosis 48 c3d98A_ not modelled 99.4 17 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form 49 c2qkxA_ not modelled 99.3 15 PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate 50 d1yp2a1 not modelled 99.3 16 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 51 c2rijA_ not modelled 99.2 20 PDB header:transferase Chain: A: PDB Molecule:putative 2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of a putative 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase (cj1605c, dapd) from campylobacter3 jejuni at 1.90 a resolution 52 c1yp3C_ not modelled 99.1 13 PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp 53 d1fxja1 not modelled 99.0 18 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like 54 c1fwyA_ not modelled 98.7 18 PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac 55 c3brkX_ not modelled 98.4 14 PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens 56 d1hbga_ not modelled 39.0 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 57 d1jl6a_ not modelled 38.5 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 58 c3nepX_ not modelled 32.9 6 PDB header:oxidoreductase Chain: X: PDB Molecule:malate dehydrogenase; PDBTitle: 1.55a resolution structure of malate dehydrogenase from salinibacter2 ruber 59 d1jl7a_ not modelled 31.9 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 60 d1x9fb_ not modelled 30.0 12 Fold:Globin-like Superfamily:Globin-like Family:Globins 61 c3evrA_ not modelled 28.8 16 PDB header:signaling protein Chain: A: PDB Molecule:myosin light chain kinase, green fluorescent PDBTitle: crystal structure of calcium bound monomeric gcamp2 62 d2qmma1 not modelled 28.7 26 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 63 d1itha_ not modelled 24.5 21 Fold:Globin-like Superfamily:Globin-like Family:Globins 64 d1ez4a2 not modelled 21.8 11 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 65 c1mldA_ not modelled 21.6 18 PDB header:oxidoreductase(nad(a)-choh(d)) Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: refined structure of mitochondrial malate dehydrogenase2 from porcine heart and the consensus structure for3 dicarboxylic acid oxidoreductases 66 c2da4A_ not modelled 21.4 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein dkfzp686k21156; PDBTitle: solution structure of the homeobox domain of the2 hypothetical protein, dkfzp686k21156 67 c1yhuX_ not modelled 20.7 9 PDB header:oxygen storage/transport Chain: X: PDB Molecule:hemoglobin b2 chain; PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits. 68 c1yhuJ_ not modelled 18.6 12 PDB header:oxygen storage/transport Chain: J: PDB Molecule:giant hemoglobins b chain; PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits. 69 c2jmlA_ not modelled 18.3 26 PDB header:transcription Chain: A: PDB Molecule:dna binding domain/transcriptional regulator; PDBTitle: solution structure of the n-terminal domain of cara repressor 70 c1ez4B_ not modelled 17.3 11 PDB header:oxidoreductase Chain: B: PDB Molecule:lactate dehydrogenase; PDBTitle: crystal structure of non-allosteric l-lactate dehydrogenase2 from lactobacillus pentosus at 2.3 angstrom resolution 71 c1yhuA_ not modelled 17.1 7 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemoglobin a1 chain; PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits. 72 c3n0lA_ not modelled 17.1 17 PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni 73 d1y9ia_ not modelled 17.0 20 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 74 c3g2bA_ not modelled 16.9 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:coenzyme pqq synthesis protein d; PDBTitle: crystal structure of pqqd from xanthomonas campestris 75 d1wh5a_ not modelled 16.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 76 c1k5hB_ not modelled 15.6 9 PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose-5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose-5-phosphate reductoisomerase 77 d1hyha2 not modelled 15.2 8 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 78 c3au9A_ not modelled 14.9 18 PDB header:isomerase/isomerase inhibitor Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of the quaternary complex-1 of an isomerase 79 d2a1ja1 not modelled 14.9 17 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Hef domain-like 80 c2eghA_ not modelled 14.5 9 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase2 complexed with a magnesium ion, nadph and fosmidomycin 81 c2jcyA_ not modelled 14.5 23 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: x-ray structure of mutant 1-deoxy-d-xylulose 5-phosphate2 reductoisomerase, dxr, rv2870c, from mycobacterium3 tuberculosis 82 c3itcA_ not modelled 14.4 16 PDB header:hydrolase Chain: A: PDB Molecule:renal dipeptidase; PDBTitle: crystal structure of sco3058 with bound citrate and glycerol 83 d1itua_ not modelled 14.4 14 Fold:TIM beta/alpha-barrel Superfamily:Metallo-dependent hydrolases Family:Renal dipeptidase 84 c1r0lD_ not modelled 14.1 14 PDB header:oxidoreductase Chain: D: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from2 zymomonas mobilis in complex with nadph 85 d1lhta_ not modelled 14.0 14 Fold:Globin-like Superfamily:Globin-like Family:Globins 86 c1tlqA_ not modelled 13.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ypjq; PDBTitle: crystal structure of protein ypjq from bacillus subtilis, pfam duf64 87 d1tlqa_ not modelled 13.9 17 Fold:YutG-like Superfamily:YutG-like Family:YutG-like 88 c2d2mB_ not modelled 13.9 9 PDB header:oxygen storage/transport Chain: B: PDB Molecule:giant hemoglobin, a2(a5) globin chain; PDBTitle: structure of an extracellular giant hemoglobin of the2 gutless beard worm oligobrachia mashikoi 89 c2hjrK_ not modelled 13.3 9 PDB header:oxidoreductase Chain: K: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of cryptosporidium parvum malate2 dehydrogenase 90 d2v1fa1 not modelled 13.2 14 Fold:Globin-like Superfamily:Globin-like Family:Globins 91 d3bzka3 not modelled 13.0 9 Fold:Tex N-terminal region-like Superfamily:Tex N-terminal region-like Family:Tex N-terminal region-like 92 d2c1xa1 not modelled 12.6 7 Fold:UDP-Glycosyltransferase/glycogen phosphorylase Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase Family:UDPGT-like 93 c1x3kA_ not modelled 12.4 17 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemoglobin component v; PDBTitle: crystal structure of a hemoglobin component (ta-v) from2 tokunagayusurika akamusi 94 c2zs0A_ not modelled 12.2 12 PDB header:oxygen storage, oxygen transport Chain: A: PDB Molecule:extracellular giant hemoglobin major globin subunit a1; PDBTitle: structural basis for the heterotropic and homotropic interactions of2 invertebrate giant hemoglobin 95 c2ld7A_ not modelled 12.0 15 PDB header:transcription Chain: A: PDB Molecule:histone deacetylase complex subunit sap30; PDBTitle: solution structure of the msin3a pah3-sap30 sid complex 96 d1x9fd_ not modelled 12.0 9 Fold:Globin-like Superfamily:Globin-like Family:Globins 97 d2pv7a1 not modelled 11.7 16 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:TyrA dimerization domain-like 98 c3a14B_ not modelled 11.7 9 PDB header:oxidoreductase Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase; PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph 99 c2d4aC_ not modelled 11.4 10 PDB header:oxidoreductase Chain: C: PDB Molecule:malate dehydrogenase; PDBTitle: structure of the malate dehydrogenase from aeropyrum pernix

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0