234 d2hoxa1 Probab=99.50   E-value=2.6e-11  Score=84.33  Aligned_columns=299  Identities=10%

Q ss_pred             HCCCCCCCCCCHHHHHHHHHHHHHCCC---CCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
Q ss_conf             187435666898999999999986598---53489983896899899999999998750899888999808764231888
Q batch____        75 MSHVMFGGITHAPAIELCRKLVAMTPQ---PLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGA  151 (429)
Q Consensus        75 ~~~~~~~~~~~~~~~~la~~l~~~~~~---~~~~v~f~~SGseA~~~alk~ar~~~~~~~~~~~~ii~~~~~~HG~~~~a  151 (429)
                      +.+.....+.++...+.-.++.+..+.   +...+.|+++.+++...++.....-........+.-++...-+.......
T Consensus        92 y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~~  171 (425)
T d2hoxa1          92 YFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQ  171 (425)
T ss_dssp             SSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHH
T ss_conf             54566434452899999999988508867887769994688999999999864888612356774357300237789999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf             85237733243455676888204358764446666721189999998606898538998135448888745888999999
Q batch____       152 MSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRI  231 (429)
Q Consensus       152 ~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~le~~l~~~~~~~aaii~ep~~~~~gG~~~~~~~~l~~l  231 (429)
                      +...+.+......                            ..+.+.+...++..++++......+|-+.+         
T Consensus       172 ~~~~~~~~~~~~~----------------------------d~~~~~~~~~~~~~~~~i~~P~NPtG~v~~---------  214 (425)
T d2hoxa1         172 TKYFDKKGYVWAG----------------------------NAANYVNVSNPEQYIEMVTSPNNPEGLLRH---------  214 (425)
T ss_dssp             HHHSCCTTEEEEE----------------------------EGGGGTTCSCGGGEEEEEESSCTTTCCCCC---------
T ss_pred             HHHCCCCCCCCCC----------------------------CHHHHHHHCCCCCEEEEECCCCCCCCEEEE---------
T ss_conf             9855997444247----------------------------988999724888579998178888560654---------


Q ss_pred             HHHHHHCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCEEEECCHHHCCCCCEEEEEEC-HHHHHHHCCCCCCEEEECCCC
Q ss_conf             9998773939998068778862278851444489854010021010266310477664-899975115776404405788
Q batch____       232 RKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTF  310 (429)
Q Consensus       232 ~~l~~~~g~~li~DEv~tG~gr~G~~~~~~~~g~~~Di~~~~k~l~~g~~~~g~v~~~-~~i~~~~~~~~~~~~~~~~t~  310 (429)
                         |.+||+++|.||++...--.......   +-.-.+.++||.++-.|..+|+++.+ +++.+.+......     .+.
T Consensus       215 ---a~~~~~~~i~De~y~~~~~~~~~~~~---~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~-----~~~  283 (425)
T d2hoxa1         215 ---AVIKGCKSIYDMVYYWPHYTPIKYKA---DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTK-----NTE  283 (425)
T ss_dssp             ---CSSTTCEEEEECTTCSTTTSCCCSCB---CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHH-----HTS
T ss_pred             ---EEECCCEEEEECCCCCCCCCCCCCCC---CCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHC-----CCC
T ss_conf             ---23239689971432343323333456---8549998155101233231018996898999999986410-----577


Q ss_pred             CCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------------CCCCCE
Q ss_conf             87989999799863112-------------23699999999999999999986059985433------------534647
Q batch____       311 MGNPLACAAANASLAIL-------------ESGDWQQQVADIEVQLREQLAPARDAEMVADV------------RVLGAI  365 (429)
Q Consensus       311 ~~~~la~aaa~a~l~~~-------------~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v------------rg~G~i  365 (429)
                      ..+..+..++.+.+...             ......+.++++-+.+.+.|............            ...+.+
T Consensus       284 ~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f  363 (425)
T d2hoxa1         284 GTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSY  363 (425)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSE
T ss_pred             CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             73689999999996020134565555489999999999999999999998635763003456554322100137787616


Q ss_pred             EEEEECCHHHHHHHHHHHHHCCEEEEEC------CCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9999579689999999999789299950------9989980798888999999999999999776
Q batch____       366 GVVETTHPVNMAALQKFFVEQGVWIRPF------GKLIYLMPPYIILPQQLQRLTAAVNRAVQDE  424 (429)
Q Consensus       366 ~~i~~~~~~~a~~~~~~l~~~Gv~~~~~------g~~lr~~p~~~~t~eeid~~~~~l~~~l~e~  424 (429)
                      +++.+..+ ....+.+.|.++||.+.|.      .+-+|++.  .-|+|++|+++++|++.++.+
T Consensus       364 ~w~~~~~~-~~~~~~~lL~e~GI~v~pGs~FG~~~~~vRiSl--~~~~e~ld~~l~rL~~~v~~~  425 (425)
T d2hoxa1         364 AWVKCEWE-EDKDCYQTFQNGRINTQNGVGFEASSRYVRLSL--IKTQDDFDQLMYYLKDMVKAK  425 (425)
T ss_dssp             EEEEECSG-GGCSHHHHHHHTTEECEEGGGGTSCTTEEEEEC--SSCHHHHHHHHHHHHHHHTCC
T ss_pred             EEEECCCC-CHHHHHHHHHHCCEEEECCCCCCCCCCEEEEEE--CCCHHHHHHHHHHHHHHHHCC
T ss_conf             99867898-089999999966949971702389886599991--399899999999999987269