435 c1vliA_ Probab=86.43   E-value=2.6  Score=22.02  Aligned_columns=126  Identities=14%

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC
Q ss_conf             99999999999974998999964760578741266668376775888888677899999999986497707999710114
Q batch____       161 VNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEVVDAGIEEWGADRIGIRVSPIGT  240 (365)
Q Consensus       161 i~~f~~aA~ra~~aGfDgVeIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~R~~~Eii~air~~vg~~~i~vris~~~~  240 (365)
                      ++...+-..-|++||.|+|-.   +-|....++++-.    ++-=..+-.+..|..|-...+.+.|-..=|.+--++.+ 
T Consensus        30 l~~A~~lI~~A~~aGadaVKF---Qt~~~~~~~~~~~----~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~f~sTpfd-  101 (358)
T c1vliA_          30 LDQAFALIDAAAEAGADAVKF---QXFQADRXYQKDP----DVSIFSLVQSXEXPAEWILPLLDYCREKQVIFLSTVCD-  101 (358)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEE---CCBCGGGGTSCCC----CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEECBCCS-
T ss_pred             HHHHHHHHHHHHHCCCCEEEE---ECCCCCCCCCCCC----CCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECC-
T ss_conf             899999999999719978984---2014210015655----63045777531699899999999999759829983479-


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCC-CHHHHHHHHH
Q ss_conf             3456788999999999999953269859991268855787530899999998729989992788-9999999997
Q batch____       241 FQNTDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYTDAFREKVRARFHGPIIGAGAY-TVEKAETLIG  314 (365)
Q Consensus       241 ~~~~~~~~~~~~e~~~l~~~l~~~Gid~i~vs~~~~~~~~~~~~~~~~~ik~~v~ipVi~~G~i-t~e~ae~~l~  314 (365)
                                    ..-++.|++.+++++-+..+...     +.++.+.+.+ .+.|||.+-++ |.++.+++++
T Consensus       102 --------------~~svd~l~~~~v~~~KIaS~el~-----n~pLL~~~A~-~gkPvilSTGmatl~Ei~~Av~  156 (358)
T c1vliA_         102 --------------EGSADLLQSTSPSAFKIASYEIN-----HLPLLKYVAR-LNRPXIFSTAGAEISDVHEAWR  156 (358)
T ss_dssp             --------------HHHHHHHHTTCCSCEEECGGGTT-----CHHHHHHHHT-TCSCEEEECTTCCHHHHHHHHH
T ss_pred             --------------HHHHHHHHHCCCCEEEECHHHCC-----CHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHH
T ss_conf             --------------99999998639986998412279-----8899999963-1897185135468899999999