BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (99 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q0TBP2 Uncharacterized lipoprotein ysaB n=57 Tax=Entero... 184 1e-45 UniRef50_B7LTH5 Putative uncharacterized protein ysaB n=3 Tax=Es... 181 7e-45 UniRef50_Q8Z2B5 Uncharacterized lipoprotein ysaB n=35 Tax=Entero... 147 1e-34 UniRef50_A4W571 Putative uncharacterized protein n=2 Tax=Enterob... 140 1e-32 UniRef50_C4X268 Putative outer membrane protein n=6 Tax=Enteroba... 110 1e-23 >UniRef50_Q0TBP2 Uncharacterized lipoprotein ysaB n=57 Tax=Enterobacteriaceae RepID=YSAB_ECOL5 Length = 93 Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 86/90 (95%), Positives = 86/90 (95%) Query: 10 MALMVLVGCSIPSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDVTAFEQFQG 69 M LM LVGCS P PVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDVTAFEQFQG Sbjct: 4 MVLMALVGCSTPPPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDVTAFEQFQG 63 Query: 70 SYEMRGYTFRKEQFVCSFDADGHFLHLSMR 99 SYEMRGYTFRKEQFVCSFDADGHFLHLSMR Sbjct: 64 SYEMRGYTFRKEQFVCSFDADGHFLHLSMR 93 >UniRef50_B7LTH5 Putative uncharacterized protein ysaB n=3 Tax=Escherichia RepID=B7LTH5_ESCF3 Length = 100 Score = 181 bits (459), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 84/99 (84%), Positives = 89/99 (89%) Query: 1 MMMNAFFPAMALMVLVGCSIPSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKID 60 MMM FPA+ LM++ GCS P P QKAQRVKVDP+RSLNME LC+DQAAKRYNTG QKID Sbjct: 2 MMMKYCFPAIVLMLMAGCSTPPPEQKAQRVKVDPIRSLNMEELCRDQAAKRYNTGAQKID 61 Query: 61 VTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR 99 VTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR Sbjct: 62 VTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR 100 >UniRef50_Q8Z2B5 Uncharacterized lipoprotein ysaB n=35 Tax=Enterobacteriaceae RepID=YSAB_SALTI Length = 100 Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/100 (71%), Positives = 78/100 (78%), Gaps = 1/100 (1%) Query: 1 MMMNAFFPAMALMVLVGCS-IPSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKI 59 M+M F M + LVGC+ P P QKAQ+ KV P R+L+MEALCK QAA+RYNTG QKI Sbjct: 1 MIMKYFCTVMIAIALVGCTATPPPTQKAQQSKVSPTRTLDMEALCKAQAAQRYNTGAQKI 60 Query: 60 DVTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR 99 VT FEQFQGSYEMRG TFRKE FVCSFDADG FLHLSMR Sbjct: 61 AVTGFEQFQGSYEMRGNTFRKESFVCSFDADGQFLHLSMR 100 >UniRef50_A4W571 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=A4W571_ENT38 Length = 88 Score = 140 bits (354), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 67/88 (76%), Positives = 72/88 (81%), Gaps = 2/88 (2%) Query: 14 VLVGCSI--PSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDVTAFEQFQGSY 71 +L GCS +P Q+AQ+ KV P RSLNME LCKDQAA RYNTG QKIDVT FEQFQGSY Sbjct: 1 MLAGCSSQEEAPAQRAQKSKVSPERSLNMEELCKDQAAYRYNTGTQKIDVTGFEQFQGSY 60 Query: 72 EMRGYTFRKEQFVCSFDADGHFLHLSMR 99 EMRGYT RKE FVCSFDA+G FLHLSMR Sbjct: 61 EMRGYTTRKESFVCSFDAEGQFLHLSMR 88 >UniRef50_C4X268 Putative outer membrane protein n=6 Tax=Enterobacteriaceae RepID=C4X268_KLEPN Length = 104 Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 51/86 (59%), Positives = 61/86 (70%), Gaps = 2/86 (2%) Query: 16 VGCS--IPSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDVTAFEQFQGSYEM 73 GCS + P QKAQR ++ P +LNM LCKDQAA RYNT Q +DV FEQFQ SYE+ Sbjct: 19 AGCSETVSPPTQKAQRARITPQTTLNMAQLCKDQAAIRYNTQTQLVDVNHFEQFQASYEL 78 Query: 74 RGYTFRKEQFVCSFDADGHFLHLSMR 99 G T + E+F+CSFD DG F+HLSMR Sbjct: 79 SGRTGKNERFICSFDPDGQFMHLSMR 104 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B7LTH5 Putative uncharacterized protein ysaB n=3 Tax=Es... 179 3e-44 UniRef50_Q0TBP2 Uncharacterized lipoprotein ysaB n=57 Tax=Entero... 168 6e-41 UniRef50_Q8Z2B5 Uncharacterized lipoprotein ysaB n=35 Tax=Entero... 162 4e-39 UniRef50_A4W571 Putative uncharacterized protein n=2 Tax=Enterob... 143 2e-33 UniRef50_C4X268 Putative outer membrane protein n=6 Tax=Enteroba... 137 9e-32 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_B7LTH5 Putative uncharacterized protein ysaB n=3 Tax=Escherichia RepID=B7LTH5_ESCF3 Length = 100 Score = 179 bits (453), Expect = 3e-44, Method: Composition-based stats. Identities = 84/99 (84%), Positives = 89/99 (89%) Query: 1 MMMNAFFPAMALMVLVGCSIPSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKID 60 MMM FPA+ LM++ GCS P P QKAQRVKVDP+RSLNME LC+DQAAKRYNTG QKID Sbjct: 2 MMMKYCFPAIVLMLMAGCSTPPPEQKAQRVKVDPIRSLNMEELCRDQAAKRYNTGAQKID 61 Query: 61 VTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR 99 VTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR Sbjct: 62 VTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR 100 >UniRef50_Q0TBP2 Uncharacterized lipoprotein ysaB n=57 Tax=Enterobacteriaceae RepID=YSAB_ECOL5 Length = 93 Score = 168 bits (425), Expect = 6e-41, Method: Composition-based stats. Identities = 86/90 (95%), Positives = 86/90 (95%) Query: 10 MALMVLVGCSIPSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDVTAFEQFQG 69 M LM LVGCS P PVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDVTAFEQFQG Sbjct: 4 MVLMALVGCSTPPPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDVTAFEQFQG 63 Query: 70 SYEMRGYTFRKEQFVCSFDADGHFLHLSMR 99 SYEMRGYTFRKEQFVCSFDADGHFLHLSMR Sbjct: 64 SYEMRGYTFRKEQFVCSFDADGHFLHLSMR 93 >UniRef50_Q8Z2B5 Uncharacterized lipoprotein ysaB n=35 Tax=Enterobacteriaceae RepID=YSAB_SALTI Length = 100 Score = 162 bits (409), Expect = 4e-39, Method: Composition-based stats. Identities = 71/100 (71%), Positives = 78/100 (78%), Gaps = 1/100 (1%) Query: 1 MMMNAFFPAMALMVLVGCS-IPSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKI 59 M+M F M + LVGC+ P P QKAQ+ KV P R+L+MEALCK QAA+RYNTG QKI Sbjct: 1 MIMKYFCTVMIAIALVGCTATPPPTQKAQQSKVSPTRTLDMEALCKAQAAQRYNTGAQKI 60 Query: 60 DVTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR 99 VT FEQFQGSYEMRG TFRKE FVCSFDADG FLHLSMR Sbjct: 61 AVTGFEQFQGSYEMRGNTFRKESFVCSFDADGQFLHLSMR 100 >UniRef50_A4W571 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=A4W571_ENT38 Length = 88 Score = 143 bits (360), Expect = 2e-33, Method: Composition-based stats. Identities = 67/88 (76%), Positives = 72/88 (81%), Gaps = 2/88 (2%) Query: 14 VLVGCSI--PSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDVTAFEQFQGSY 71 +L GCS +P Q+AQ+ KV P RSLNME LCKDQAA RYNTG QKIDVT FEQFQGSY Sbjct: 1 MLAGCSSQEEAPAQRAQKSKVSPERSLNMEELCKDQAAYRYNTGTQKIDVTGFEQFQGSY 60 Query: 72 EMRGYTFRKEQFVCSFDADGHFLHLSMR 99 EMRGYT RKE FVCSFDA+G FLHLSMR Sbjct: 61 EMRGYTTRKESFVCSFDAEGQFLHLSMR 88 >UniRef50_C4X268 Putative outer membrane protein n=6 Tax=Enterobacteriaceae RepID=C4X268_KLEPN Length = 104 Score = 137 bits (345), Expect = 9e-32, Method: Composition-based stats. Identities = 51/86 (59%), Positives = 61/86 (70%), Gaps = 2/86 (2%) Query: 16 VGCS--IPSPVQKAQRVKVDPLRSLNMEALCKDQAAKRYNTGEQKIDVTAFEQFQGSYEM 73 GCS + P QKAQR ++ P +LNM LCKDQAA RYNT Q +DV FEQFQ SYE+ Sbjct: 19 AGCSETVSPPTQKAQRARITPQTTLNMAQLCKDQAAIRYNTQTQLVDVNHFEQFQASYEL 78 Query: 74 RGYTFRKEQFVCSFDADGHFLHLSMR 99 G T + E+F+CSFD DG F+HLSMR Sbjct: 79 SGRTGKNERFICSFDPDGQFMHLSMR 104 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.131 0.390 Lambda K H 0.267 0.0397 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 376,738,894 Number of Sequences: 3077464 Number of extensions: 12275956 Number of successful extensions: 45279 Number of sequences better than 1.0e-01: 5 Number of HSP's better than 0.1 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45265 Number of HSP's gapped (non-prelim): 11 length of query: 99 length of database: 1,040,396,356 effective HSP length: 68 effective length of query: 31 effective length of database: 831,128,804 effective search space: 25764992924 effective search space used: 25764992924 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.0 bits) S2: 87 (38.2 bits)