Job Description P39212 Confidence 98.42% Date Thu Jan 5 11:58:31 GMT 2012 Rank 3 Aligned Residues 81 % Identity 10% Template c6paxA_ PDB info PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions Resolution 2.50 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																																	.	.	.
Query SS confidence																																																																	.	.	.
Query Sequence		N	N	T	G	A	P	M	K	K	R	N	F	S	A	E	F	K	R	E	S	A	Q	L	V	V	D	Q	K	Y	T	V	A	D	A	A	K	A	M	D	V	G	L	S	T	M	T	R	W	V	K	Q	L	R	D	E	R	Q	G	K	T	P	K	A	.	.	.	S	P	I	T	P	E	Q	I	E	I	R	K	L	R
Query Conservation																																																																	.	.	.
Alig confidence																										.																																							.	.	.
Template Conservation																										.
Template Sequence		Q	L	G	G	V	F	V	N	G	R	P	L	P	D	S	T	R	Q	R	I	V	E	L	A	.	H	S	G	A	R	P	C	D	I	S	R	I	L	Q	V	S	N	G	C	V	S	K	I	L	G	R	Y	Y	A	T	G	S	I	R	P	R	A	I	G	G	S	K	P	R	V	A	T	P	E	V	V	S	K	I	A
Template Known Secondary structure		T	T	S					T	T	S															.		T	T											T																	S			S					S					S	S	S
Template Predicted Secondary structure																										.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		84	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	L	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Y	K	Q	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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