HHsearch 1.5
NAME  batch____
FAM   
FILE  query
COM   //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/0af34a6d0eaa6316/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/0af34a6d0eaa6316/query.hhm 
DATE  Thu Jan 26 04:02:09 2012
LENG  26 match states, 26 columns in multiple alignment
FILT  1 out of 3 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.0 
EVD   0.6008  5.2938 
SEQ
>ss_pred
CCCCEEEHHHHHHHHHHHCCCCCCCC
>ss_conf
97122518789999997312122239
>Consensus
mkkttiimmgvaiivvlgtelgwwxx
>batch____
MKKTTIIMMGVAIIVVLGTELGWWXX
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
M 1    *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

K 2    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

K 3    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

T 4    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

T 5    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	5
       0	*	*	*	*	*	*	1000	0	0	

I 6    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1000	0	0	

I 7    *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1000	0	0	

M 8    *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1000	0	0	

M 9    *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1000	0	0	

G 10   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1000	0	0	

V 11   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	11
       0	*	*	*	*	*	*	1000	0	0	

A 12   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1000	0	0	

I 13   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1000	0	0	

I 14   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1000	0	0	

V 15   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	15
       0	*	*	*	*	*	*	1000	0	0	

V 16   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	16
       0	*	*	*	*	*	*	1000	0	0	

L 17   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1000	0	0	

G 18   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1000	0	0	

T 19   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	19
       0	*	*	*	*	*	*	1000	0	0	

E 20   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1000	0	0	

L 21   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1000	0	0	

G 22   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1000	0	0	

W 23   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	23
       0	*	*	*	*	*	*	1000	0	0	

W 24   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	24
       0	*	*	*	*	*	*	1000	0	0	

X 25   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	25
       *	*	*	*	*	*	*	1000	0	0	

X 26   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	26
       0	*	*	0	*	*	*	1000	0	0	

//