BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (149 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P31446 Inner membrane protein yidI n=43 Tax=Enterobacte... 291 5e-78 UniRef50_A9MJX6 Putative uncharacterized protein n=1 Tax=Salmone... 124 7e-28 UniRef50_A4A9T1 Putative uncharacterized protein n=1 Tax=Congreg... 67 2e-10 UniRef50_UPI0001C34581 hypothetical protein PretD1_06681 n=1 Tax... 54 2e-06 UniRef50_B9R1Q0 Putative uncharacterized protein n=1 Tax=Labrenz... 52 4e-06 UniRef50_D0KJH8 Putative uncharacterized protein n=2 Tax=Pectoba... 48 8e-05 >UniRef50_P31446 Inner membrane protein yidI n=43 Tax=Enterobacteriaceae RepID=YIDI_ECOLI Length = 149 Score = 291 bits (745), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 149/149 (100%), Positives = 149/149 (100%) Query: 1 MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIK 60 MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIK Sbjct: 1 MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIK 60 Query: 61 GEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAF 120 GEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAF Sbjct: 61 GEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAF 120 Query: 121 HTLLFGIGIVCSILLIFLIFSFLTGGSLV 149 HTLLFGIGIVCSILLIFLIFSFLTGGSLV Sbjct: 121 HTLLFGIGIVCSILLIFLIFSFLTGGSLV 149 >UniRef50_A9MJX6 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MJX6_SALAR Length = 107 Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 67/105 (63%), Positives = 90/105 (85%) Query: 43 IVADKTAEIKRGLLAGIKGEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKE 102 ++A++ + +K+G++AG+KGE + +K VD+DKIL+ SGIALA+ AL+CAFIGGMRKE Sbjct: 1 MIAEQVSAVKKGIIAGLKGETPSVAAQKNTVDIDKILDNSGIALAVIALVCAFIGGMRKE 60 Query: 103 NRWGIRGALVFGGGTLAFHTLLFGIGIVCSILLIFLIFSFLTGGS 147 NRWGIRGAL+FG TLAFH LLFGIGI+C+I+L+ L+FSFL+GGS Sbjct: 61 NRWGIRGALIFGVSTLAFHALLFGIGIICAIILLILVFSFLSGGS 105 >UniRef50_A4A9T1 Putative uncharacterized protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A9T1_9GAMM Length = 144 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 71/132 (53%), Gaps = 3/132 (2%) Query: 6 QNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKIT 65 + I +G++ GA AL++ ++HF G S P P E+ VA+K IK +A +KGE++ Sbjct: 5 RPTIGIVGIVLGATALLLAVMHFWAGSLS-PQPPIETTVAEKAVAIKNATIAALKGEELE 63 Query: 66 TVEKKEDVDVDKILN-QSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLL 124 V K+ D+D+I+ +G +A +L MR+ R + G ++ GG +AF + Sbjct: 64 QVAPKKSWDLDRIVTLATGFLAGLAFILGVVSYAMREPTRVAV-GGVILGGAAMAFQFAV 122 Query: 125 FGIGIVCSILLI 136 IG + +L+ Sbjct: 123 VAIGAIFLAILV 134 >UniRef50_UPI0001C34581 hypothetical protein PretD1_06681 n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C34581 Length = 160 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 8/145 (5%) Query: 7 NKISSLGMLFGAIALMMGIIHFSFG-PFSAPPPTFESIVADKTAEIKRGLLAGIKGE--- 62 N+ S + ++ GA ++++ +++ S + P E IV +K + IK+ + IKG+ Sbjct: 6 NRFSLIAIIIGAFSILVILVNQSLEREYVQSKPKLEQIVHEKVSSIKKATIDAIKGKAYQ 65 Query: 63 --KITTVEKKEDVDVDKIL--NQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTL 118 + ++ + +DKI Q I L++ ++ I +R EN+ R AL G L Sbjct: 66 APTVDPANEQRQLLLDKIELSKQISITLSVFGIILTAISFIRHENKKSGRIALALNGSVL 125 Query: 119 AFHTLLFGIGIVCSILLIFLIFSFL 143 A LL+ V SI+ + L+ F+ Sbjct: 126 AISLLLYAAAGVASIVAVLLVIWFI 150 >UniRef50_B9R1Q0 Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R1Q0_9RHOB Length = 150 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 2/134 (1%) Query: 4 IAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEK 63 I + ++S+G+LFG AL++ + HF GP P PT + + A+I++ + +KGE Sbjct: 7 ITRPWVASIGLLFGGCALLIVLFHFGAGPLD-PQPTIGQTIGETAADIRQSAVRALKGEP 65 Query: 64 ITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTL 123 E + +D++L G L A+L + + +E+R A+ G + F Sbjct: 66 QPEPE-AQPWSLDRLLKTLGPILGGVAILLGTLAYVLREDRRLATTAVGIGAFAIGFQLF 124 Query: 124 LFGIGIVCSILLIF 137 + I +V ++L+ Sbjct: 125 TWTILMVAGVILLL 138 >UniRef50_D0KJH8 Putative uncharacterized protein n=2 Tax=Pectobacterium RepID=D0KJH8_PECWW Length = 147 Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 1/129 (0%) Query: 1 MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIK 60 M ++K S++GM+ GA+AL++ + +F GP S P + E VA+K I+ L + Sbjct: 1 MTTDKKSKFSTIGMVLGALALLISVTYFWTGP-SKPEVSIEERVAEKIVSIRDTTLDRLM 59 Query: 61 GEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAF 120 G+ T + + +++ + AL A++ A G R+E+ + + G +AF Sbjct: 60 GKAPQTQRPEPSFNERRLVIAATSALGCLAIIFAVFGFTRRESARSCISSAMLGIAVIAF 119 Query: 121 HTLLFGIGI 129 ++ I + Sbjct: 120 PFIISAINM 128 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P31446 Inner membrane protein yidI n=43 Tax=Enterobacte... 160 1e-38 UniRef50_B9R1Q0 Putative uncharacterized protein n=1 Tax=Labrenz... 131 9e-30 UniRef50_D0KJH8 Putative uncharacterized protein n=2 Tax=Pectoba... 130 2e-29 UniRef50_UPI0001C34581 hypothetical protein PretD1_06681 n=1 Tax... 115 6e-25 UniRef50_A4A9T1 Putative uncharacterized protein n=1 Tax=Congreg... 109 3e-23 UniRef50_A9MJX6 Putative uncharacterized protein n=1 Tax=Salmone... 97 2e-19 Sequences not found previously or not previously below threshold: UniRef50_B4EXE1 Putative membrane protein n=1 Tax=Proteus mirabi... 93 3e-18 UniRef50_A3VA06 Putative uncharacterized protein n=1 Tax=Rhodoba... 62 8e-09 UniRef50_A9D8P2 Putative uncharacterized protein n=1 Tax=Hoeflea... 60 2e-08 UniRef50_C7D8D7 Putative uncharacterized protein n=1 Tax=Thalass... 52 6e-06 UniRef50_D0CTC1 Putative uncharacterized protein n=1 Tax=Silicib... 47 2e-04 UniRef50_A4Z1U8 Putative uncharacterized protein n=1 Tax=Bradyrh... 45 0.001 >UniRef50_P31446 Inner membrane protein yidI n=43 Tax=Enterobacteriaceae RepID=YIDI_ECOLI Length = 149 Score = 160 bits (405), Expect = 1e-38, Method: Composition-based stats. Identities = 149/149 (100%), Positives = 149/149 (100%) Query: 1 MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIK 60 MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIK Sbjct: 1 MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIK 60 Query: 61 GEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAF 120 GEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAF Sbjct: 61 GEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAF 120 Query: 121 HTLLFGIGIVCSILLIFLIFSFLTGGSLV 149 HTLLFGIGIVCSILLIFLIFSFLTGGSLV Sbjct: 121 HTLLFGIGIVCSILLIFLIFSFLTGGSLV 149 >UniRef50_B9R1Q0 Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R1Q0_9RHOB Length = 150 Score = 131 bits (329), Expect = 9e-30, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 4 IAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEK 63 I + ++S+G+LFG AL++ + HF GP P PT + + A+I++ + +KGE Sbjct: 7 ITRPWVASIGLLFGGCALLIVLFHFGAGPLD-PQPTIGQTIGETAADIRQSAVRALKGEP 65 Query: 64 ITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTL 123 E + +D++L G L A+L + + +E+R A+ G + F Sbjct: 66 QPEPE-AQPWSLDRLLKTLGPILGGVAILLGTLAYVLREDRRLATTAVGIGAFAIGFQLF 124 Query: 124 LFGIGIVCSILLIFLIFSFL 143 + I +V ++L+ I L Sbjct: 125 TWTILMVAGVILLLGIMYNL 144 >UniRef50_D0KJH8 Putative uncharacterized protein n=2 Tax=Pectobacterium RepID=D0KJH8_PECWW Length = 147 Score = 130 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 1/132 (0%) Query: 1 MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIK 60 M ++K S++GM+ GA+AL++ + +F GP S P + E VA+K I+ L + Sbjct: 1 MTTDKKSKFSTIGMVLGALALLISVTYFWTGP-SKPEVSIEERVAEKIVSIRDTTLDRLM 59 Query: 61 GEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAF 120 G+ T + + +++ + AL A++ A G R+E+ + + G +AF Sbjct: 60 GKAPQTQRPEPSFNERRLVIAATSALGCLAIIFAVFGFTRRESARSCISSAMLGIAVIAF 119 Query: 121 HTLLFGIGIVCS 132 ++ I + + Sbjct: 120 PFIISAINMAFT 131 >UniRef50_UPI0001C34581 hypothetical protein PretD1_06681 n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C34581 Length = 160 Score = 115 bits (287), Expect = 6e-25, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 8/145 (5%) Query: 7 NKISSLGMLFGAIALMMGIIHFSFG-PFSAPPPTFESIVADKTAEIKRGLLAGIKGE--- 62 N+ S + ++ GA ++++ +++ S + P E IV +K + IK+ + IKG+ Sbjct: 6 NRFSLIAIIIGAFSILVILVNQSLEREYVQSKPKLEQIVHEKVSSIKKATIDAIKGKAYQ 65 Query: 63 --KITTVEKKEDVDVDKIL--NQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTL 118 + ++ + +DKI Q I L++ ++ I +R EN+ R AL G L Sbjct: 66 APTVDPANEQRQLLLDKIELSKQISITLSVFGIILTAISFIRHENKKSGRIALALNGSVL 125 Query: 119 AFHTLLFGIGIVCSILLIFLIFSFL 143 A LL+ V SI+ + L+ F+ Sbjct: 126 AISLLLYAAAGVASIVAVLLVIWFI 150 >UniRef50_A4A9T1 Putative uncharacterized protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A9T1_9GAMM Length = 144 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 1/136 (0%) Query: 5 AQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKI 64 + I +G++ GA AL++ ++HF G S P P E+ VA+K IK +A +KGE++ Sbjct: 4 QRPTIGIVGIVLGATALLLAVMHFWAGSLS-PQPPIETTVAEKAVAIKNATIAALKGEEL 62 Query: 65 TTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLL 124 V K+ D+D+I+ + LA A + + +E G ++ GG +AF + Sbjct: 63 EQVAPKKSWDLDRIVTLATGFLAGLAFILGVVSYAMREPTRVAVGGVILGGAAMAFQFAV 122 Query: 125 FGIGIVCSILLIFLIF 140 IG + +L+ + Sbjct: 123 VAIGAIFLAILVAAVI 138 >UniRef50_A9MJX6 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MJX6_SALAR Length = 107 Score = 96.6 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 67/105 (63%), Positives = 90/105 (85%) Query: 43 IVADKTAEIKRGLLAGIKGEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKE 102 ++A++ + +K+G++AG+KGE + +K VD+DKIL+ SGIALA+ AL+CAFIGGMRKE Sbjct: 1 MIAEQVSAVKKGIIAGLKGETPSVAAQKNTVDIDKILDNSGIALAVIALVCAFIGGMRKE 60 Query: 103 NRWGIRGALVFGGGTLAFHTLLFGIGIVCSILLIFLIFSFLTGGS 147 NRWGIRGAL+FG TLAFH LLFGIGI+C+I+L+ L+FSFL+GGS Sbjct: 61 NRWGIRGALIFGVSTLAFHALLFGIGIICAIILLILVFSFLSGGS 105 >UniRef50_B4EXE1 Putative membrane protein n=1 Tax=Proteus mirabilis HI4320 RepID=B4EXE1_PROMH Length = 157 Score = 92.7 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 70/145 (48%), Gaps = 8/145 (5%) Query: 7 NKISSLGMLFGAIALMMGIIHFSFG-PFSAPPPTFESIVADKTAEIKRGLLAGIKGEK-- 63 NK + + ++ G +++ +I+ S + P E IV +K + +K+ ++ IKG+ Sbjct: 6 NKFNIIAIIVGVLSIFTILINQSLEREYVQMSPKLEQIVHEKVSSLKKSVVDAIKGKTYQ 65 Query: 64 ---ITTVEKKEDVDVDKI--LNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTL 118 I ++ + ++ + Q G+ L++ ++ I +R EN++ R AL G L Sbjct: 66 AAAIDIEAEQRQQLLKRMEQIKQIGVVLSVLGIIFTAISFIRHENKYSCRIALALNGSIL 125 Query: 119 AFHTLLFGIGIVCSILLIFLIFSFL 143 + L++ + SI+ I L+ L Sbjct: 126 SISLLMYVATSIASIVTILLLIWLL 150 >UniRef50_A3VA06 Putative uncharacterized protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VA06_9RHOB Length = 162 Score = 61.5 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 2/134 (1%) Query: 13 GMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKITTVEKKED 72 ++ GA+A+M+ + GP P P+ + + E+KR G + + Sbjct: 23 AIVTGALAVMVVCFYIY-GPTLEPQPSAAQQIGEIAGEMKRAAWRAFLGMEAEAAAPAPE 81 Query: 73 VDV-DKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLLFGIGIVC 131 + + L +G AL + A++ + + +R+E+R + GGG + F + ++ Sbjct: 82 PSLFMRYLPFAGPALGLVAVVLSAVSLIRREDRKLAGYGVALGGGAVLFQVFWWFAALIV 141 Query: 132 SILLIFLIFSFLTG 145 +L I L G Sbjct: 142 CAILFVKIIENLDG 155 >UniRef50_A9D8P2 Putative uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D8P2_9RHIZ Length = 154 Score = 60.0 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 1/126 (0%) Query: 15 LFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKITTVEKKEDVD 74 + A ++ + GP P+ + + EIKR G V Sbjct: 20 VIAGAAALILVFAQMAGPSFEAKPSAAVQIGEIAGEIKRSAWRSFFGLANEAPAPA-PVS 78 Query: 75 VDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLLFGIGIVCSIL 134 V ++ + L + A++ + + G+ +EN+ G + FH L + ++ ++ Sbjct: 79 VWTYVSFAAPILGVIAIVLSLVSGVLRENKRFYTYGAGLGIAAIVFHFLWWVALLIAGVV 138 Query: 135 LIFLIF 140 L+ I Sbjct: 139 LLVAII 144 >UniRef50_C7D8D7 Putative uncharacterized protein n=1 Tax=Thalassiobium sp. R2A62 RepID=C7D8D7_9RHOB Length = 155 Score = 51.9 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 4/144 (2%) Query: 1 MGIIAQNKISSLGMLFGAIALMMGII---HFSFGPFSAPPPTFESIVADKTAEIKRGLLA 57 M + + K + GAIAL+M ++ SA + + + + AEI++ Sbjct: 4 MTLENRPKWGLAEFILGAIALLMVVLTIAQLFGQSQSASSTSIGTSIGEIAAEIRQAAQP 63 Query: 58 GIKGEKITTVEKKE-DVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGG 116 I G++ V + D ++ LA +++ I R E + + G Sbjct: 64 KISGDQRPEVVQAPKTTDPRDVVVIIAYVLAGISIITGGISLYRGEPATLAKITIALGLS 123 Query: 117 TLAFHTLLFGIGIVCSILLIFLIF 140 + + ++C +++I + Sbjct: 124 AIVMQYAFWMALLICGMMIITAVI 147 >UniRef50_D0CTC1 Putative uncharacterized protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CTC1_9RHOB Length = 153 Score = 47.3 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 2/117 (1%) Query: 28 FSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKITTVEKKEDVDVDKILNQSGIALA 87 F GPF AP + + + AE+ + L G + D+D L L Sbjct: 30 FWAGPF-APQQSSGVTLGELAAELGKSTLRAAAGMEQPAPV-APTRDLDDFLQIGVAMLG 87 Query: 88 IAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLLFGIGIVCSILLIFLIFSFLT 144 A++ + IG +R E R +V G G + F L+I + S + Sbjct: 88 GLAIVVSVIGILRHEKRRPAIAGVVIGTGAILFQFFAMAFFAFLGALVIMALLSSFS 144 >UniRef50_A4Z1U8 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4Z1U8_BRASO Length = 134 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Query: 15 LFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKITTVEKKEDVD 74 + G ALM ++ P PPP + ++ D +K L+A I+G + ++ Sbjct: 1 MIGLFALMAAVLPHWVLPAIDPPPPIDKVIVDVGHRVKERLVARIRGVEYQAPVRERSWT 60 Query: 75 VDKILNQSGIA---LAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLLFGIGIVC 131 D++ Q IA L + A++ +G +R+E R A GG +A +G++ Sbjct: 61 -DRLHQQLPIAAVSLGLLAIILGVVGQLRREERQVAAMATTLGGCAIAVQLSFMLMGVLI 119 Query: 132 SILLIFLIFSFLT 144 + L++L+ FL Sbjct: 120 VLALLYLLGDFLA 132 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P31446 Inner membrane protein yidI n=43 Tax=Enterobacte... 135 5e-31 UniRef50_B9R1Q0 Putative uncharacterized protein n=1 Tax=Labrenz... 121 9e-27 UniRef50_D0KJH8 Putative uncharacterized protein n=2 Tax=Pectoba... 114 1e-24 UniRef50_A4A9T1 Putative uncharacterized protein n=1 Tax=Congreg... 105 4e-22 UniRef50_A3VA06 Putative uncharacterized protein n=1 Tax=Rhodoba... 105 4e-22 UniRef50_UPI0001C34581 hypothetical protein PretD1_06681 n=1 Tax... 101 6e-21 UniRef50_B4EXE1 Putative membrane protein n=1 Tax=Proteus mirabi... 101 8e-21 UniRef50_A9D8P2 Putative uncharacterized protein n=1 Tax=Hoeflea... 99 4e-20 UniRef50_C7D8D7 Putative uncharacterized protein n=1 Tax=Thalass... 99 6e-20 UniRef50_A9MJX6 Putative uncharacterized protein n=1 Tax=Salmone... 82 7e-15 UniRef50_A4Z1U8 Putative uncharacterized protein n=1 Tax=Bradyrh... 80 2e-14 UniRef50_D0CTC1 Putative uncharacterized protein n=1 Tax=Silicib... 78 8e-14 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P31446 Inner membrane protein yidI n=43 Tax=Enterobacteriaceae RepID=YIDI_ECOLI Length = 149 Score = 135 bits (339), Expect = 5e-31, Method: Composition-based stats. Identities = 149/149 (100%), Positives = 149/149 (100%) Query: 1 MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIK 60 MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIK Sbjct: 1 MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIK 60 Query: 61 GEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAF 120 GEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAF Sbjct: 61 GEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAF 120 Query: 121 HTLLFGIGIVCSILLIFLIFSFLTGGSLV 149 HTLLFGIGIVCSILLIFLIFSFLTGGSLV Sbjct: 121 HTLLFGIGIVCSILLIFLIFSFLTGGSLV 149 >UniRef50_B9R1Q0 Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R1Q0_9RHOB Length = 150 Score = 121 bits (303), Expect = 9e-27, Method: Composition-based stats. Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 4 IAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEK 63 I + ++S+G+LFG AL++ + HF GP P PT + + A+I++ + +KGE Sbjct: 7 ITRPWVASIGLLFGGCALLIVLFHFGAGPL-DPQPTIGQTIGETAADIRQSAVRALKGEP 65 Query: 64 ITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTL 123 + + +D++L G L A+L + + +E+R A+ G + F Sbjct: 66 QPEP-EAQPWSLDRLLKTLGPILGGVAILLGTLAYVLREDRRLATTAVGIGAFAIGFQLF 124 Query: 124 LFGIGIVCSILLIFLIFSFL 143 + I +V ++L+ I L Sbjct: 125 TWTILMVAGVILLLGIMYNL 144 >UniRef50_D0KJH8 Putative uncharacterized protein n=2 Tax=Pectobacterium RepID=D0KJH8_PECWW Length = 147 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 1/132 (0%) Query: 1 MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIK 60 M ++K S++GM+ GA+AL++ + +F GP S P + E VA+K I+ L + Sbjct: 1 MTTDKKSKFSTIGMVLGALALLISVTYFWTGP-SKPEVSIEERVAEKIVSIRDTTLDRLM 59 Query: 61 GEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAF 120 G+ T + + +++ + AL A++ A G R+E+ + + G +AF Sbjct: 60 GKAPQTQRPEPSFNERRLVIAATSALGCLAIIFAVFGFTRRESARSCISSAMLGIAVIAF 119 Query: 121 HTLLFGIGIVCS 132 ++ I + + Sbjct: 120 PFIISAINMAFT 131 >UniRef50_A4A9T1 Putative uncharacterized protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A9T1_9GAMM Length = 144 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%) Query: 5 AQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKI 64 + I +G++ GA AL++ ++HF G S P P E+ VA+K IK +A +KGE++ Sbjct: 4 QRPTIGIVGIVLGATALLLAVMHFWAGSLS-PQPPIETTVAEKAVAIKNATIAALKGEEL 62 Query: 65 TTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLL 124 V K+ D+D+I+ + LA A + + +E G ++ GG +AF + Sbjct: 63 EQVAPKKSWDLDRIVTLATGFLAGLAFILGVVSYAMREPTRVAVGGVILGGAAMAFQFAV 122 Query: 125 FGIGIVCSILLIFLIFSFL 143 IG + +L+ + L Sbjct: 123 VAIGAIFLAILVAAVIGEL 141 >UniRef50_A3VA06 Putative uncharacterized protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VA06_9RHOB Length = 162 Score = 105 bits (262), Expect = 4e-22, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 2/139 (1%) Query: 8 KISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKITTV 67 ++ GA+A+M+ + GP P P+ + + E+KR G + Sbjct: 18 TWGFWAIVTGALAVMVVCFYIY-GPTLEPQPSAAQQIGEIAGEMKRAAWRAFLGMEAEAA 76 Query: 68 EKKEDVDV-DKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLLFG 126 + + + L +G AL + A++ + + +R+E+R + GGG + F + Sbjct: 77 APAPEPSLFMRYLPFAGPALGLVAVVLSAVSLIRREDRKLAGYGVALGGGAVLFQVFWWF 136 Query: 127 IGIVCSILLIFLIFSFLTG 145 ++ +L I L G Sbjct: 137 AALIVCAILFVKIIENLDG 155 >UniRef50_UPI0001C34581 hypothetical protein PretD1_06681 n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C34581 Length = 160 Score = 101 bits (252), Expect = 6e-21, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 70/145 (48%), Gaps = 8/145 (5%) Query: 7 NKISSLGMLFGAIALMMGIIHFSFG-PFSAPPPTFESIVADKTAEIKRGLLAGIKGEKIT 65 N+ S + ++ GA ++++ +++ S + P E IV +K + IK+ + IKG+ Sbjct: 6 NRFSLIAIIIGAFSILVILVNQSLEREYVQSKPKLEQIVHEKVSSIKKATIDAIKGKAYQ 65 Query: 66 TV-----EKKEDVDVDKIL--NQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTL 118 ++ + +DKI Q I L++ ++ I +R EN+ R AL G L Sbjct: 66 APTVDPANEQRQLLLDKIELSKQISITLSVFGIILTAISFIRHENKKSGRIALALNGSVL 125 Query: 119 AFHTLLFGIGIVCSILLIFLIFSFL 143 A LL+ V SI+ + L+ F+ Sbjct: 126 AISLLLYAAAGVASIVAVLLVIWFI 150 >UniRef50_B4EXE1 Putative membrane protein n=1 Tax=Proteus mirabilis HI4320 RepID=B4EXE1_PROMH Length = 157 Score = 101 bits (251), Expect = 8e-21, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 69/145 (47%), Gaps = 8/145 (5%) Query: 7 NKISSLGMLFGAIALMMGIIHFSFG-PFSAPPPTFESIVADKTAEIKRGLLAGIKGEKIT 65 NK + + ++ G +++ +I+ S + P E IV +K + +K+ ++ IKG+ Sbjct: 6 NKFNIIAIIVGVLSIFTILINQSLEREYVQMSPKLEQIVHEKVSSLKKSVVDAIKGKTYQ 65 Query: 66 TVE-----KKEDVDVDKI--LNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTL 118 ++ + ++ + Q G+ L++ ++ I +R EN++ R AL G L Sbjct: 66 AAAIDIEAEQRQQLLKRMEQIKQIGVVLSVLGIIFTAISFIRHENKYSCRIALALNGSIL 125 Query: 119 AFHTLLFGIGIVCSILLIFLIFSFL 143 + L++ + SI+ I L+ L Sbjct: 126 SISLLMYVATSIASIVTILLLIWLL 150 >UniRef50_A9D8P2 Putative uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D8P2_9RHIZ Length = 154 Score = 98.9 bits (245), Expect = 4e-20, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 1/129 (0%) Query: 15 LFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKITTVEKKEDVD 74 + A ++ + GP P+ + + EIKR G V Sbjct: 20 VIAGAAALILVFAQMAGPSFEAKPSAAVQIGEIAGEIKRSAWRSFFGLANEAPAPAP-VS 78 Query: 75 VDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLLFGIGIVCSIL 134 V ++ + L + A++ + + G+ +EN+ G + FH L + ++ ++ Sbjct: 79 VWTYVSFAAPILGVIAIVLSLVSGVLRENKRFYTYGAGLGIAAIVFHFLWWVALLIAGVV 138 Query: 135 LIFLIFSFL 143 L+ I + Sbjct: 139 LLVAIIENI 147 >UniRef50_C7D8D7 Putative uncharacterized protein n=1 Tax=Thalassiobium sp. R2A62 RepID=C7D8D7_9RHOB Length = 155 Score = 98.5 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 57/147 (38%), Gaps = 4/147 (2%) Query: 1 MGIIAQNKISSLGMLFGAIALMMGII---HFSFGPFSAPPPTFESIVADKTAEIKRGLLA 57 M + + K + GAIAL+M ++ SA + + + + AEI++ Sbjct: 4 MTLENRPKWGLAEFILGAIALLMVVLTIAQLFGQSQSASSTSIGTSIGEIAAEIRQAAQP 63 Query: 58 GIKGEKITTVEKKE-DVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGG 116 I G++ V + D ++ LA +++ I R E + + G Sbjct: 64 KISGDQRPEVVQAPKTTDPRDVVVIIAYVLAGISIITGGISLYRGEPATLAKITIALGLS 123 Query: 117 TLAFHTLLFGIGIVCSILLIFLIFSFL 143 + + ++C +++I + + + Sbjct: 124 AIVMQYAFWMALLICGMMIITAVINNI 150 >UniRef50_A9MJX6 Putative uncharacterized protein n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MJX6_SALAR Length = 107 Score = 81.6 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 67/105 (63%), Positives = 90/105 (85%) Query: 43 IVADKTAEIKRGLLAGIKGEKITTVEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKE 102 ++A++ + +K+G++AG+KGE + +K VD+DKIL+ SGIALA+ AL+CAFIGGMRKE Sbjct: 1 MIAEQVSAVKKGIIAGLKGETPSVAAQKNTVDIDKILDNSGIALAVIALVCAFIGGMRKE 60 Query: 103 NRWGIRGALVFGGGTLAFHTLLFGIGIVCSILLIFLIFSFLTGGS 147 NRWGIRGAL+FG TLAFH LLFGIGI+C+I+L+ L+FSFL+GGS Sbjct: 61 NRWGIRGALIFGVSTLAFHALLFGIGIICAIILLILVFSFLSGGS 105 >UniRef50_A4Z1U8 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4Z1U8_BRASO Length = 134 Score = 80.0 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 4/133 (3%) Query: 15 LFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKITTVEKKEDVD 74 + G ALM ++ P PPP + ++ D +K L+A I+G + ++ Sbjct: 1 MIGLFALMAAVLPHWVLPAIDPPPPIDKVIVDVGHRVKERLVARIRGVEYQAPVRERSWT 60 Query: 75 VDKILNQSGIA---LAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLLFGIGIVC 131 D++ Q IA L + A++ +G +R+E R A GG +A +G++ Sbjct: 61 -DRLHQQLPIAAVSLGLLAIILGVVGQLRREERQVAAMATTLGGCAIAVQLSFMLMGVLI 119 Query: 132 SILLIFLIFSFLT 144 + L++L+ FL Sbjct: 120 VLALLYLLGDFLA 132 >UniRef50_D0CTC1 Putative uncharacterized protein n=1 Tax=Silicibacter lacuscaerulensis ITI-1157 RepID=D0CTC1_9RHOB Length = 153 Score = 78.1 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 49/138 (35%), Gaps = 2/138 (1%) Query: 7 NKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTFESIVADKTAEIKRGLLAGIKGEKITT 66 G A+AL + F GPF AP + + + AE+ + L G + Sbjct: 9 PVFGWAGFCLAALALFAALFVFWAGPF-APQQSSGVTLGELAAELGKSTLRAAAGMEQPA 67 Query: 67 VEKKEDVDVDKILNQSGIALAIAALLCAFIGGMRKENRWGIRGALVFGGGTLAFHTLLFG 126 D+D L L A++ + IG +R E R +V G G + F Sbjct: 68 PV-APTRDLDDFLQIGVAMLGGLAIVVSVIGILRHEKRRPAIAGVVIGTGAILFQFFAMA 126 Query: 127 IGIVCSILLIFLIFSFLT 144 L+I + S + Sbjct: 127 FFAFLGALVIMALLSSFS 144 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.324 0.141 0.323 Lambda K H 0.267 0.0432 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 683,830,207 Number of Sequences: 3077464 Number of extensions: 21988818 Number of successful extensions: 155669 Number of sequences better than 1.0e-01: 14 Number of HSP's better than 0.1 without gapping: 26 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 155604 Number of HSP's gapped (non-prelim): 37 length of query: 149 length of database: 1,040,396,356 effective HSP length: 112 effective length of query: 37 effective length of database: 695,720,388 effective search space: 25741654356 effective search space used: 25741654356 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 87 (38.0 bits)