BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (105 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B5F0T1 Met repressor n=221 Tax=Bacteria RepID=METJ_SALA4 218 6e-56 UniRef50_A6TGC7 Met repressor n=13 Tax=Proteobacteria RepID=METJ... 209 2e-53 UniRef50_Q4QNP9 Met repressor n=60 Tax=Gammaproteobacteria RepID... 187 9e-47 UniRef50_Q1ZCT0 Transcriptional repressor protein MetJ n=1 Tax=P... 134 7e-31 >UniRef50_B5F0T1 Met repressor n=221 Tax=Bacteria RepID=METJ_SALA4 Length = 105 Score = 218 bits (554), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 104/105 (99%), Positives = 105/105 (100%) Query: 1 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE 60 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE Sbjct: 1 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE 60 Query: 61 AFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPETWEY 105 AFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGI+PETWEY Sbjct: 61 AFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGIDPETWEY 105 >UniRef50_A6TGC7 Met repressor n=13 Tax=Proteobacteria RepID=METJ_KLEP7 Length = 105 Score = 209 bits (532), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 99/105 (94%), Positives = 103/105 (98%) Query: 1 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE 60 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE Sbjct: 1 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE 60 Query: 61 AFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPETWEY 105 AFLHAFTGQPLP+D DLRKERSDEIPEAAK IMRE+GI+P+TWEY Sbjct: 61 AFLHAFTGQPLPNDEDLRKERSDEIPEAAKAIMRELGIDPDTWEY 105 >UniRef50_Q4QNP9 Met repressor n=60 Tax=Gammaproteobacteria RepID=METJ_HAEI8 Length = 105 Score = 187 bits (475), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 86/105 (81%), Positives = 99/105 (94%) Query: 1 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE 60 MA+W G+YISPYAEHGKKSEQVKKITVSIP+KVL+ILT+ERTRRQ+ +LRHATNSELLCE Sbjct: 1 MADWDGKYISPYAEHGKKSEQVKKITVSIPIKVLEILTNERTRRQLKSLRHATNSELLCE 60 Query: 61 AFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPETWEY 105 AFLHAFTGQPLP DADL KER+DEIPE AK +MRE+G++PE+WEY Sbjct: 61 AFLHAFTGQPLPTDADLMKERNDEIPEDAKVLMRELGVDPESWEY 105 >UniRef50_Q1ZCT0 Transcriptional repressor protein MetJ n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZCT0_9GAMM Length = 84 Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 61/67 (91%), Positives = 66/67 (98%) Query: 3 EWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAF 62 +W+GEYISPYAEHGKKSEQVKKITVSIP KVL+ILTDERTRRQ+NNLRHATNSELLCEAF Sbjct: 4 DWNGEYISPYAEHGKKSEQVKKITVSIPTKVLQILTDERTRRQINNLRHATNSELLCEAF 63 Query: 63 LHAFTGQ 69 LHA+TGQ Sbjct: 64 LHAYTGQ 70 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B5F0T1 Met repressor n=221 Tax=Bacteria RepID=METJ_SALA4 200 1e-50 UniRef50_Q4QNP9 Met repressor n=60 Tax=Gammaproteobacteria RepID... 196 2e-49 UniRef50_A6TGC7 Met repressor n=13 Tax=Proteobacteria RepID=METJ... 195 3e-49 UniRef50_Q1ZCT0 Transcriptional repressor protein MetJ n=1 Tax=P... 132 2e-30 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_B5F0T1 Met repressor n=221 Tax=Bacteria RepID=METJ_SALA4 Length = 105 Score = 200 bits (509), Expect = 1e-50, Method: Composition-based stats. Identities = 104/105 (99%), Positives = 105/105 (100%) Query: 1 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE 60 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE Sbjct: 1 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE 60 Query: 61 AFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPETWEY 105 AFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGI+PETWEY Sbjct: 61 AFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGIDPETWEY 105 >UniRef50_Q4QNP9 Met repressor n=60 Tax=Gammaproteobacteria RepID=METJ_HAEI8 Length = 105 Score = 196 bits (498), Expect = 2e-49, Method: Composition-based stats. Identities = 86/105 (81%), Positives = 99/105 (94%) Query: 1 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE 60 MA+W G+YISPYAEHGKKSEQVKKITVSIP+KVL+ILT+ERTRRQ+ +LRHATNSELLCE Sbjct: 1 MADWDGKYISPYAEHGKKSEQVKKITVSIPIKVLEILTNERTRRQLKSLRHATNSELLCE 60 Query: 61 AFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPETWEY 105 AFLHAFTGQPLP DADL KER+DEIPE AK +MRE+G++PE+WEY Sbjct: 61 AFLHAFTGQPLPTDADLMKERNDEIPEDAKVLMRELGVDPESWEY 105 >UniRef50_A6TGC7 Met repressor n=13 Tax=Proteobacteria RepID=METJ_KLEP7 Length = 105 Score = 195 bits (496), Expect = 3e-49, Method: Composition-based stats. Identities = 99/105 (94%), Positives = 103/105 (98%) Query: 1 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE 60 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE Sbjct: 1 MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCE 60 Query: 61 AFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPETWEY 105 AFLHAFTGQPLP+D DLRKERSDEIPEAAK IMRE+GI+P+TWEY Sbjct: 61 AFLHAFTGQPLPNDEDLRKERSDEIPEAAKAIMRELGIDPDTWEY 105 >UniRef50_Q1ZCT0 Transcriptional repressor protein MetJ n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZCT0_9GAMM Length = 84 Score = 132 bits (333), Expect = 2e-30, Method: Composition-based stats. Identities = 61/67 (91%), Positives = 66/67 (98%) Query: 3 EWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAF 62 +W+GEYISPYAEHGKKSEQVKKITVSIP KVL+ILTDERTRRQ+NNLRHATNSELLCEAF Sbjct: 4 DWNGEYISPYAEHGKKSEQVKKITVSIPTKVLQILTDERTRRQINNLRHATNSELLCEAF 63 Query: 63 LHAFTGQ 69 LHA+TGQ Sbjct: 64 LHAYTGQ 70 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.137 0.414 Lambda K H 0.267 0.0403 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 418,071,788 Number of Sequences: 3077464 Number of extensions: 14157037 Number of successful extensions: 30178 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 30170 Number of HSP's gapped (non-prelim): 8 length of query: 105 length of database: 1,040,396,356 effective HSP length: 73 effective length of query: 32 effective length of database: 815,741,484 effective search space: 26103727488 effective search space used: 26103727488 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 87 (38.1 bits)