Job Description P32109 Confidence 15.83% Date Thu Jan 5 11:49:10 GMT 2012 Rank 1 Aligned Residues 105 % Identity 19% Template c1j5qB_ PDB info PDB header:viral protein Chain: B: PDB Molecule:major capsid protein; PDBTitle: the structure and evolution of the major capsid protein of a large,2 lipid-containing, dna virus. Resolution 2.55 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	L	P	G	Q	Q	Y	D	E	E	S	G	L	Y	Y	N	R	H	R	Y	Y	D	P	L	L	G	R	Y	I	T	Q	D	P	I	G	L	K	G	G	W	N	F	Y	Q	Y	P	L	N	P	V	I	N	V	D	P	Q	G	L	V	D	I	N	L	Y	P	E	S	D	L	I	H	S	V	A	D	E	I	N	I
Query Conservation
Alig confidence																		.	.																	.	.	.	.	.															.							.	.	.	.	.	.
Template Conservation																		.	.																	.	.	.	.	.															.							.	.	.	.	.	.
Template Sequence		I	Q	L	N	G	Q	D	R	F	A	T	R	K	G	S	Y	.	.	F	N	K	V	Q	P	Y	Q	S	I	G	G	V	T	P	A	.	.	.	.	.	G	V	Y	L	Y	S	F	A	L	K	P	A	G	R	.	Q	P	S	G	T	C	.	.	.	.	.	.	N	F	S	R	I	D	N	A	T	L	S	L	T	Y
Template Known Secondary structure					T	T			S	S								.	.										T		S				T	.	.	.	.	.	T						S	S	S		T	T	S	S	.	S						.	.	.	.	.	.		G	G	G		S
Template Predicted Secondary structure																		.	.																	.	.	.	.	.															.							.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.						350	.	.	.	.	.	.	.	.	.	360	.	.	.		.	.	.	.	.	.							370	.	.	.	.	.	.	.	.	.	380	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	V	F	T	I	G	G	H	G	T	P	T	S	I	E	S	A	T	R	S	I	M	T	A	K	D	L	A	Y	L	I	K	F	D	G	N	Y	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	C	S	I	D	A	T	S	P	A	A	V	L	G	N	T	E	T	V	T	A	N	T	A	T	L	L	T	A	L	N	I	Y	A	K	N	Y	N
Template Known Secondary structure								T	T						S	S			T	T				G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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