Phyre 2 alignment of P21515 with c1bmxA_

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Job Description | P21515
Confidence | 3.67% | Date | Thu Jan 5 11:38:26 GMT 2012
Rank | 43 | Aligned Residues | 20
% Identity | 10% | Template | c1bmxA_
PDB info | PDB header:viral protein | Chain: A: PDB Molecule:human immunodeficiency virus type 1 capsid; | PDBTitle: hiv-1 capsid protein major homology region peptide analog,2 nmr, 8 structures
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | P | D | F | P | L | Q | E | F | V | C | Y | A | R | E | Q | V | M | T | I | L | P
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Template Sequence |  | K | E | . | P | F | R | D | Y | V | D | R | F | Y | K | T | L | R | A | E | Q | A
Template Known Secondary structure |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
Template Predicted Secondary structure |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 11 | . |  | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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