Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	H	A	Y	L	H	C	L	S	H	S	P	L	V	G	Y	V	D	P	A	Q	E	V	L	D	E	V	N	G	V	I	A	S	A	R	E	R	I	A	A	F	S	P	E	L	V	V	L	F	A	P	D	H	Y	N	G	F	F	Y	D
Secondary structure
SS confidence
Disorder		?	?	?	?										?		?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	M	P	P	F	C	L	G	V	G	A	T	A	I	G	D	F	G	S	A	A	G	E	L	P	V	P	V	E	L	A	E	A	C	A	H	A	V	M	K	S	G	I	D	L	A	V	S	Y	C	M	Q	V	D	H	G	F	A	Q	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	E	F	L	L	G	G	L	D	K	V	P	V	L	P	V	F	I	N	G	V	A	T	P	L	P	G	F	Q	R	T	R	M	L	G	E	A	I	G	R	F	T	S	T	L	N	K	R	V	L	F	L	G	S	G	G	L	S	H	Q
Secondary structure
SS confidence
Disorder																					?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	P	V	P	E	L	A	K	A	D	A	H	M	R	D	R	L	L	G	S	G	K	D	L	P	A	S	E	R	E	L	R	Q	Q	R	V	I	S	A	A	E	K	F	V	E	D	Q	R	T	L	H	P	L	N	P	I	W	D	N	Q
Secondary structure
SS confidence
Disorder						?	?																?	?	?	?	?	?			?	?	?	?									?			?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		F	M	T	L	L	E	Q	G	R	I	Q	E	L	D	A	V	S	N	E	E	L	S	A	I	A	G	K	S	T	H	E	I	K	T	W	V	A	A	F	A	A	I	S	A	F	G	N	W	R	S	E	G	R	Y	Y	R	P	I	P	E
Secondary structure
SS confidence
Disorder																									?		?																?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.
Sequence		W	I	A	G	F	G	S	L	S	A	R	T	E	N
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1b4u chain B Region: 3 - 313 Aligned: 263 Modelled: 267 Confidence: 100.0% Identity: 26% Fold: Phosphorylase/hydrolase-like Superfamily: LigB-like Family: LigB-like Phyre2 PDB 2pw6 chain A domain 1 Region: 1 - 312 Aligned: 236 Modelled: 263 Confidence: 100.0% Identity: 17% Fold: Phosphorylase/hydrolase-like Superfamily: LigB-like Family: LigB-like Phyre2 PDB 3bd0 chain D Region: 29 - 312 Aligned: 226 Modelled: 250 Confidence: 99.9% Identity: 14% PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii Phyre2 PDB 1ja1 chain A domain 2 Region: 88 - 247 Aligned: 134 Modelled: 160 Confidence: 89.0% Identity: 12% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 1b1c chain A Region: 88 - 247 Aligned: 134 Modelled: 144 Confidence: 78.4% Identity: 10% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 2gfq chain C Region: 41 - 176 Aligned: 120 Modelled: 123 Confidence: 77.8% Identity: 18% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:upf0204 protein ph0006; PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii Phyre2 PDB 2ixa chain A Region: 13 - 136 Aligned: 114 Modelled: 124 Confidence: 75.0% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase Phyre2 PDB 2hnb chain A Region: 88 - 246 Aligned: 132 Modelled: 159 Confidence: 72.0% Identity: 13% PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin Phyre2 PDB 1bvy chain F Region: 88 - 247 Aligned: 128 Modelled: 146 Confidence: 70.1% Identity: 11% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Flavodoxin-related Phyre2 PDB 1bvy chain F Region: 88 - 247 Aligned: 128 Modelled: 146 Confidence: 70.1% Identity: 11% PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) Phyre2 PDB 3hr4 chain C Region: 24 - 247 Aligned: 161 Modelled: 193 Confidence: 64.5% Identity: 16% PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex Phyre2 PDB 1aug chain A Region: 29 - 169 Aligned: 139 Modelled: 141 Confidence: 64.4% Identity: 15% Fold: Phosphorylase/hydrolase-like Superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Phyre2 PDB 3a52 chain A Region: 22 - 53 Aligned: 31 Modelled: 32 Confidence: 59.0% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp. Phyre2 PDB 1tll chain A domain 2 Region: 88 - 247 Aligned: 128 Modelled: 144 Confidence: 57.2% Identity: 14% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 2gfq chain A domain 1 Region: 41 - 176 Aligned: 120 Modelled: 123 Confidence: 56.2% Identity: 18% Fold: Phosphorylase/hydrolase-like Superfamily: AF0625-like Family: AF0625-like Phyre2 PDB 1j9z chain B Region: 88 - 247 Aligned: 134 Modelled: 160 Confidence: 55.6% Identity: 12% PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g Phyre2 PDB 1yqe chain A domain 1 Region: 42 - 176 Aligned: 119 Modelled: 122 Confidence: 52.0% Identity: 17% Fold: Phosphorylase/hydrolase-like Superfamily: AF0625-like Family: AF0625-like Phyre2 PDB 1vme chain B Region: 1 - 178 Aligned: 134 Modelled: 146 Confidence: 51.0% Identity: 12% PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution Phyre2 PDB 1ykg chain A domain 1 Region: 88 - 247 Aligned: 127 Modelled: 138 Confidence: 51.0% Identity: 10% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: Cytochrome p450 reductase N-terminal domain-like Phyre2 PDB 3db2 chain C Region: 13 - 143 Aligned: 121 Modelled: 130 Confidence: 50.7% Identity: 12% PDB header:oxidoreductase Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase; PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution Phyre2 1 d1b4ub_ 2 d2pw6a1 3 c3bd0D_ 4 d1ja1a2 5 d1b1ca_ 6 c2gfqC_ 7 c2ixaA_ 8 c2hnbA_ 9 d1bvyf_ 10 c1bvyF_ 11 c3hr4C_ 12 d1auga_ 13 c3a52A_ 14 d1tlla2 15 d2gfqa1 16 c1j9zB_ 17 d1yqea1 18 c1vmeB_ 19 d1ykga1 20 c3db2C_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1b4ub_ 100.0 26 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 2 d2pw6a1 100.0 17 Fold:Phosphorylase/hydrolase-like Superfamily:LigB-like Family:LigB-like 3 c3bd0D_ 99.9 14 PDB header:peptide binding protein Chain: D: PDB Molecule:protein memo1; PDBTitle: crystal structure of memo, form ii 4 d1ja1a2 89.0 12 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 5 d1b1ca_ 78.4 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 6 c2gfqC_ 77.8 18 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:upf0204 protein ph0006; PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii 7 c2ixaA_ 75.0 13 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase 8 c2hnbA_ 72.0 13 PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin 9 d1bvyf_ 70.1 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 10 c1bvyF_ 70.1 11 PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3) 11 c3hr4C_ 64.5 16 PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex 12 d1auga_ 64.4 15 Fold:Phosphorylase/hydrolase-like Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 13 c3a52A_ 59.0 16 PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp. 14 d1tlla2 57.2 14 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 15 d2gfqa1 56.2 18 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 16 c1j9zB_ 55.6 12 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 17 d1yqea1 52.0 17 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 18 c1vmeB_ 51.0 12 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 19 d1ykga1 51.0 10 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like 20 c3db2C_ 50.7 12 PDB header:oxidoreductase Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase; PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution 21 c3giuA_ not modelled 48.3 11 PDB header:hydrolase Chain: A: PDB Molecule:pyrrolidone-carboxylate peptidase; PDBTitle: 1.25 angstrom crystal structure of pyrrolidone-carboxylate peptidase2 (pcp) from staphylococcus aureus 22 c3e2dB_ not modelled 47.1 19 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase 23 c1h6dL_ not modelled 46.9 12 PDB header:protein translocation Chain: L: PDB Molecule:precursor form of glucose-fructose PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol 24 c1ofgF_ not modelled 46.9 12 PDB header:oxidoreductase Chain: F: PDB Molecule:glucose-fructose oxidoreductase; PDBTitle: glucose-fructose oxidoreductase 25 d1y6va1 not modelled 46.2 14 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 26 c3m8yC_ not modelled 45.0 21 PDB header:isomerase Chain: C: PDB Molecule:phosphopentomutase; PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation 27 d2i09a1 not modelled 45.0 26 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:DeoB catalytic domain-like 28 d1nqka_ not modelled 44.7 18 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Ssud-like monoxygenases 29 d1iu8a_ not modelled 44.2 12 Fold:Phosphorylase/hydrolase-like Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 30 c3q3qA_ not modelled 43.4 16 PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1 31 c2w0yB_ not modelled 40.4 16 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase 32 c2iucB_ not modelled 39.8 16 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: structure of alkaline phosphatase from the antarctic2 bacterium tab5 33 c2x98A_ not modelled 39.5 16 PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase 34 c3q2kB_ not modelled 39.3 17 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of the wlba dehydrogenase from bordetella pertussis2 in complex with nadh and udp-glcnaca 35 c3p9xB_ not modelled 37.6 12 PDB header:transferase Chain: B: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 bacillus halodurans 36 c2i09A_ not modelled 36.7 24 PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans 37 d1a2za_ not modelled 36.6 14 Fold:Phosphorylase/hydrolase-like Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 38 d1jkxa_ not modelled 34.1 16 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 39 d1q74a_ not modelled 33.8 19 Fold:LmbE-like Superfamily:LmbE-like Family:LmbE-like 40 d1npya1 not modelled 33.2 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 41 c2jkzB_ not modelled 32.7 26 PDB header:transferase Chain: B: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: saccharomyces cerevisiae hypoxanthine-guanine2 phosphoribosyltransferase in complex with gmp (guanosine 5'3 -monophosphate) (orthorhombic crystal form) 42 c1ew2A_ not modelled 31.3 17 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase; PDBTitle: crystal structure of a human phosphatase 43 d1zeda1 not modelled 31.3 17 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 44 c3gfgB_ not modelled 31.3 15 PDB header:oxidoreductase Chain: B: PDB Molecule:uncharacterized oxidoreductase yvaa; PDBTitle: structure of putative oxidoreductase yvaa from bacillus subtilis in2 triclinic form 45 d1nvta1 not modelled 30.8 18 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 46 c2kz3A_ not modelled 30.7 23 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein rad51l3; PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83 47 c3krsB_ not modelled 29.9 18 PDB header:isomerase Chain: B: PDB Molecule:triosephosphate isomerase; PDBTitle: structure of triosephosphate isomerase from cryptosporidium parvum at2 1.55a resolution 48 c3f6sI_ not modelled 28.9 11 PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers 49 d1auka_ not modelled 28.4 19 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Arylsulfatase 50 d8ruca1 not modelled 28.3 21 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 51 c1hl8B_ not modelled 28.1 25 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of thermotoga maritima alpha-fucosidase 52 c1q7tA_ not modelled 27.7 19 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical protein rv1170; PDBTitle: rv1170 (mshb) from mycobacterium tuberculosis 53 d1fmta2 not modelled 27.6 10 Fold:Formyltransferase Superfamily:Formyltransferase Family:Formyltransferase 54 c3dcjA_ not modelled 27.5 21 PDB header:transferase Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative 55 c3btuD_ not modelled 27.2 14 PDB header:transcription Chain: D: PDB Molecule:galactose/lactose metabolism regulatory protein PDBTitle: crystal structure of the super-repressor mutant of gal80p2 from saccharomyces cerevisiae; gal80(s2) [e351k] 56 d1hl9a2 not modelled 26.7 25 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Putative alpha-L-fucosidase, catalytic domain 57 c3rfoA_ not modelled 26.7 22 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: crystal structure of methyionyl-trna formyltransferase from bacillus2 anthracis 58 c2pjuD_ not modelled 26.6 14 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 59 d2nu7a1 not modelled 26.1 25 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 60 c3e9mC_ not modelled 26.0 11 PDB header:oxidoreductase Chain: C: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis 61 d1iofa_ not modelled 25.8 8 Fold:Phosphorylase/hydrolase-like Superfamily:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) Family:Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 62 c3kcqA_ not modelled 25.5 16 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 anaplasma phagocytophilum 63 c1oidA_ not modelled 25.4 20 PDB header:hydrolase Chain: A: PDB Molecule:protein usha; PDBTitle: 5'-nucleotidase (e. coli) with an engineered disulfide2 bridge (s228c, p513c) 64 c2zktB_ not modelled 25.3 20 PDB header:isomerase Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate PDBTitle: structure of ph0037 protein from pyrococcus horikoshii 65 c1npyA_ not modelled 25.1 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical shikimate 5-dehydrogenase-like PDBTitle: structure of shikimate 5-dehydrogenase-like protein hi0607 66 d1p77a1 not modelled 25.0 42 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 67 c2p2sA_ not modelled 24.1 17 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase (yp_050235.1) from2 erwinia carotovora atroseptica scri1043 at 1.25 a resolution 68 d1k7ha_ not modelled 23.5 17 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 69 d1ryda1 not modelled 23.2 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 70 c3ezyB_ not modelled 23.1 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:dehydrogenase; PDBTitle: crystal structure of probable dehydrogenase tm_0414 from2 thermotoga maritima 71 c3fhlC_ not modelled 23.1 15 PDB header:oxidoreductase Chain: C: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative oxidoreductase from bacteroides2 fragilis nctc 9343 72 c1fmtA_ not modelled 22.8 10 PDB header:formyltransferase Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase; PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli 73 c3fd8A_ not modelled 22.4 13 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family; PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis 74 c1evjC_ not modelled 22.1 13 PDB header:oxidoreductase Chain: C: PDB Molecule:glucose-fructose oxidoreductase; PDBTitle: crystal structure of glucose-fructose oxidoreductase (gfor)2 delta1-22 s64d 75 c2w8dB_ not modelled 21.7 10 PDB header:transferase Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2; PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis 76 c3lb5B_ not modelled 21.1 12 PDB header:cell cycle Chain: B: PDB Molecule:hit-like protein involved in cell-cycle regulation; PDBTitle: crystal structure of hit-like protein involved in cell-cycle2 regulation from bartonella henselae with unknown ligand 77 c2ywrA_ not modelled 21.0 21 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: crystal structure of gar transformylase from aquifex2 aeolicus 78 d1o98a2 not modelled 21.0 15 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain 79 c1qapA_ not modelled 20.6 13 PDB header:glycosyltransferase Chain: A: PDB Molecule:quinolinic acid phosphoribosyltransferase; PDBTitle: quinolinic acid phosphoribosyltransferase with bound2 quinolinic acid 80 d2pjua1 not modelled 20.5 14 Fold:Chelatase-like Superfamily:PrpR receptor domain-like Family:PrpR receptor domain-like 81 c3kuxA_ not modelled 20.5 21 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the ypo2259 putative oxidoreductase from yersinia pestis 82 c3q0iA_ not modelled 20.5 14 PDB header:transferase Chain: A: PDB Molecule:methionyl-trna formyltransferase; PDBTitle: methionyl-trna formyltransferase from vibrio cholerae 83 d2a8ea1 not modelled 20.1 18 Fold:YktB/PF0168-like Superfamily:YktB/PF0168-like Family:YktB-like 84 c3pn9C_ not modelled 20.1 11 PDB header:hydrolase Chain: C: PDB Molecule:proline dipeptidase; PDBTitle: crystal structure of a proline dipeptidase from streptococcus2 pneumoniae tigr4 85 c2q4eB_ not modelled 19.9 12 PDB header:oxidoreductase Chain: B: PDB Molecule:probable oxidoreductase at4g09670; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at4g09670 86 d1qd1a2 not modelled 19.8 18 Fold:Ferredoxin-like Superfamily:Formiminotransferase domain of formiminotransferase-cyclodeaminase. Family:Formiminotransferase domain of formiminotransferase-cyclodeaminase. 87 d1aw1a_ not modelled 19.7 15 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 88 c1s3iA_ not modelled 19.4 13 PDB header:hydrolase, oxidoreductase Chain: A: PDB Molecule:10-formyltetrahydrofolate dehydrogenase; PDBTitle: crystal structure of the n terminal hydrolase domain of 10-2 formyltetrahydrofolate dehydrogenase 89 c3gzaB_ not modelled 19.0 14 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of putative alpha-l-fucosidase (np_812709.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.60 a resolution 90 d1f4pa_ not modelled 18.8 20 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 91 d1vi2a1 not modelled 18.5 29 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain 92 c2eq5D_ not modelled 18.0 25 PDB header:isomerase Chain: D: PDB Molecule:228aa long hypothetical hydantoin racemase; PDBTitle: crystal structure of hydantoin racemase from pyrococcus horikoshii ot3 93 c3tqrA_ not modelled 17.8 14 PDB header:transferase Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase; PDBTitle: structure of the phosphoribosylglycinamide formyltransferase (purn) in2 complex with ches from coxiella burnetii 94 c3nrbD_ not modelled 17.7 12 PDB header:hydrolase Chain: D: PDB Molecule:formyltetrahydrofolate deformylase; PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution 95 c1qd1A_ not modelled 17.5 16 PDB header:transferase Chain: A: PDB Molecule:formiminotransferase-cyclodeaminase; PDBTitle: the crystal structure of the formiminotransferase domain of2 formiminotransferase-cyclodeaminase. 96 d1o5xa_ not modelled 17.5 14 Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM) 97 d1usha2 not modelled 17.4 20 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain 98 c3gnnA_ not modelled 17.2 17 PDB header:transferase Chain: A: PDB Molecule:nicotinate-nucleotide pyrophosphorylase; PDBTitle: crystal structure of nicotinate-nucleotide2 pyrophosphorylase from burkholderi pseudomallei 99 c1zh8B_ not modelled 17.1 14 PDB header:oxidoreductase Chain: B: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of oxidoreductase (tm0312) from thermotoga maritima2 at 2.50 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0