17/01/2012 15:17:48 : INFO  : Run start: Tue Jan 17 15:17:47 GMT 2012
17/01/2012 15:17:52 : INFO  : Initialised job
17/01/2012 15:17:54 : INFO  : Renaming log file 'phyre2_20120117_151746.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/0a17b381faf220ee/phyre_20120117_151746.log'
17/01/2012 15:17:55 : INFO  : Initialised job:
Sequence
>batch____
MKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVKKRISEIYHENRGRYGY
RRVTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSYRGEVGQTAPNVLQRDFKATR
PNEKWVTDVTEFAVNGRKLYLSPVIDLFNNEVISYSLSERPVMNMVENMLDQAFKKLNPH
EHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCLDNAVVECFFGTLKSECFYLDEF
SNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQTYMPRV

17/01/2012 15:17:56 : INFO  : Checked sequence
17/01/2012 15:17:59 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 15:18:00 : INFO  : PSI-BLAST 3 iterations
17/01/2012 15:19:42 : INFO  : PSI-BLAST 5 iterations
17/01/2012 15:21:38 : INFO  : Finished PSI-BLAST
17/01/2012 15:21:41 : INFO  : Running Buildali to generate a3m file
17/01/2012 15:31:32 : INFO  : Converting to HMM
17/01/2012 15:31:35 : INFO  : Calibrating HMM
17/01/2012 15:31:50 : INFO  : Searching HMM database
17/01/2012 15:38:17 : INFO  : Finished buildali
17/01/2012 15:38:18 : INFO  : Predicting secondary structure
17/01/2012 15:38:25 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 15:38:27 : INFO  : Predicting Disordered regions
17/01/2012 15:38:30 : INFO  : Predicted Disorder (Disopred)
17/01/2012 15:38:31 : INFO  : Running memsat_svm check
17/01/2012 15:41:02 : INFO  : Globular protein
17/01/2012 15:41:03 : INFO  : Predicted Transmembrane (memsat_svm) ID '0a17b381faf220ee'
17/01/2012 15:41:05 : INFO  : Initialising fold library search
17/01/2012 15:41:08 : INFO  : Initialised search input
17/01/2012 15:41:10 : INFO  : Building Ensemble models
17/01/2012 15:41:12 : INFO  : Building hh.c3f9kV_.model.1.pdb
17/01/2012 15:41:25 : INFO  : Building hh.d1bcoa2.model.2.pdb
17/01/2012 15:41:35 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0a17b381faf220ee/hh.d1bcoa2.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0a17b381faf220ee/d1bcoa2.2.pdb
17/01/2012 15:41:38 : INFO  : Building hh.d1c0ma2.model.3.pdb
17/01/2012 15:41:49 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0a17b381faf220ee/hh.d1c0ma2.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0a17b381faf220ee/d1c0ma2.3.pdb
17/01/2012 15:41:53 : INFO  : Building hh.d1asua_.model.4.pdb
17/01/2012 15:42:03 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0a17b381faf220ee/hh.d1asua_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0a17b381faf220ee/d1asua_.4.pdb
17/01/2012 15:42:08 : INFO  : Building hh.c1c0mA_.model.5.pdb
17/01/2012 15:42:16 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0a17b381faf220ee/hh.c1c0mA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0a17b381faf220ee/c1c0mA_.5.pdb
17/01/2012 15:42:19 : INFO  : Building hh.d1exqa_.model.6.pdb
17/01/2012 15:42:28 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0a17b381faf220ee/hh.d1exqa_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0a17b381faf220ee/d1exqa_.6.pdb
17/01/2012 15:42:31 : INFO  : Building hh.c3hosA_.model.7.pdb
17/01/2012 15:42:39 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/0a17b381faf220ee/hh.c3hosA_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/0a17b381faf220ee/c3hosA_.15.pdb
17/01/2012 15:42:42 : INFO  : Building c3f9kV_.1.pdb
17/01/2012 15:42:54 : INFO  : Building d1bcoa2.2.pdb
17/01/2012 15:43:06 : INFO  : Building d1c0ma2.3.pdb
17/01/2012 15:43:15 : INFO  : Building d1asua_.4.pdb
17/01/2012 15:43:24 : INFO  : Building c1c0mA_.5.pdb
17/01/2012 15:43:34 : INFO  : Building d1exqa_.6.pdb
17/01/2012 15:43:45 : INFO  : Building c3nf9A_.7.pdb
17/01/2012 15:43:56 : INFO  : Building c1ex4A_.8.pdb
17/01/2012 15:44:06 : INFO  : Building c3kksB_.9.pdb
17/01/2012 15:44:16 : INFO  : Building c1k6yB_.10.pdb
17/01/2012 15:44:25 : INFO  : Building c1bcoA_.11.pdb
17/01/2012 15:44:34 : INFO  : Building d1hyva_.12.pdb
17/01/2012 15:44:45 : INFO  : Building d1c6va_.13.pdb
17/01/2012 15:44:56 : INFO  : Building d1cxqa_.14.pdb
17/01/2012 15:45:08 : INFO  : Building c3hosA_.15.pdb
17/01/2012 15:45:20 : INFO  : Building c3hpgC_.16.pdb
17/01/2012 15:45:31 : INFO  : Building c3l2tB_.17.pdb
17/01/2012 15:45:46 : INFO  : Building c3dlrA_.18.pdb
17/01/2012 15:45:56 : INFO  : Building c6paxA_.19.pdb
17/01/2012 15:46:08 : INFO  : Building c1u78A_.20.pdb
17/01/2012 15:47:46 : INFO  : Finished HH model building
17/01/2012 15:47:47 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 15:48:46 : INFO  : html domain output complete ID '0a17b381faf220ee'
17/01/2012 16:19:12 : INFO  : Run end  : Tue Jan 17 16:19:11 GMT 2012
