16/01/2012 18:00:30 : INFO  : Run start: Mon Jan 16 18:00:28 GMT 2012
16/01/2012 18:00:40 : INFO  : Initialised job
16/01/2012 18:00:44 : INFO  : Renaming log file 'phyre2_20120116_180026.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/09cda40e0e072654/phyre_20120116_180026.log'
16/01/2012 18:00:47 : INFO  : Initialised job:
Sequence
>batch____
MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIQL
AGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGIEKMQRLEIAHQMLKKVGLEG
AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRDQMQTLLLKLWQETGK
QVLLITHDIEEAVFMATELVLLSSGPGRVLERLPLNFARRFVAGESSRSIKSDPQFIAMR
EYVLSRVFEQREAFS

16/01/2012 18:00:49 : INFO  : Checked sequence
16/01/2012 18:00:56 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 18:00:58 : INFO  : PSI-BLAST 3 iterations
16/01/2012 18:03:13 : INFO  : PSI-BLAST 5 iterations
16/01/2012 18:06:21 : INFO  : Finished PSI-BLAST
16/01/2012 18:06:25 : INFO  : Running Buildali to generate a3m file
16/01/2012 19:50:42 : INFO  : Converting to HMM
16/01/2012 19:51:02 : INFO  : Calibrating HMM
16/01/2012 19:51:20 : INFO  : Searching HMM database
16/01/2012 19:55:55 : INFO  : Finished buildali
16/01/2012 19:55:59 : INFO  : Predicting secondary structure
16/01/2012 19:56:13 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 19:56:19 : INFO  : Predicting Disordered regions
16/01/2012 19:56:26 : INFO  : Predicted Disorder (Disopred)
16/01/2012 19:56:29 : INFO  : Running memsat_svm check
16/01/2012 20:03:28 : INFO  : Globular protein
16/01/2012 20:03:30 : INFO  : Predicted Transmembrane (memsat_svm) ID '09cda40e0e072654'
16/01/2012 20:03:33 : INFO  : Initialising fold library search
16/01/2012 20:03:41 : INFO  : Initialised search input
16/01/2012 20:03:45 : INFO  : Building Ensemble models
16/01/2012 20:03:53 : INFO  : Building hh.c1q1bD_.model.1.pdb
16/01/2012 20:04:24 : INFO  : Building hh.c2yyzA_.model.2.pdb
16/01/2012 20:04:45 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/09cda40e0e072654/hh.c2yyzA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/09cda40e0e072654/c2yyzA_.2.pdb
16/01/2012 20:04:53 : INFO  : Building hh.c2it1B_.model.3.pdb
16/01/2012 20:05:13 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/09cda40e0e072654/hh.c2it1B_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/09cda40e0e072654/c2it1B_.3.pdb
16/01/2012 20:05:20 : INFO  : Building hh.c3fvqB_.model.4.pdb
16/01/2012 20:05:41 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/09cda40e0e072654/hh.c3fvqB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/09cda40e0e072654/c3fvqB_.4.pdb
16/01/2012 20:05:50 : INFO  : Building hh.c1z47B_.model.5.pdb
16/01/2012 20:06:09 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/09cda40e0e072654/hh.c1z47B_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/09cda40e0e072654/c1z47B_.5.pdb
16/01/2012 20:06:16 : INFO  : Building hh.d1g2912.model.6.pdb
16/01/2012 20:06:35 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/09cda40e0e072654/hh.d1g2912.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/09cda40e0e072654/d1g2912.6.pdb
16/01/2012 20:06:41 : INFO  : Building c1q1bD_.1.pdb
16/01/2012 20:07:05 : INFO  : Building c2yyzA_.2.pdb
16/01/2012 20:07:28 : INFO  : Building c2it1B_.3.pdb
16/01/2012 20:07:50 : INFO  : Building c3fvqB_.4.pdb
16/01/2012 20:08:14 : INFO  : Building c1z47B_.5.pdb
16/01/2012 20:08:41 : INFO  : Building d1g2912.6.pdb
16/01/2012 20:09:07 : INFO  : Building c2olkD_.7.pdb
16/01/2012 20:09:32 : INFO  : Building c1oxtB_.8.pdb
16/01/2012 20:09:59 : INFO  : Building c3dhwC_.9.pdb
16/01/2012 20:10:25 : INFO  : Building d3dhwc1.10.pdb
16/01/2012 20:10:49 : INFO  : Building c1vciA_.11.pdb
16/01/2012 20:11:12 : INFO  : Building d1oxxk2.12.pdb
16/01/2012 20:11:34 : INFO  : Building c2d62A_.13.pdb
16/01/2012 20:11:56 : INFO  : Building d1vpla_.14.pdb
16/01/2012 20:12:17 : INFO  : Building c3gfoA_.15.pdb
16/01/2012 20:12:40 : INFO  : Building c2pcjB_.16.pdb
16/01/2012 20:13:02 : INFO  : Building d1b0ua_.17.pdb
16/01/2012 20:13:25 : INFO  : Building c3d31B_.18.pdb
16/01/2012 20:13:48 : INFO  : Building d1v43a3.19.pdb
16/01/2012 20:14:09 : INFO  : Building d3d31a2.20.pdb
16/01/2012 20:16:51 : INFO  : Finished HH model building
16/01/2012 20:16:54 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 20:18:14 : INFO  : html domain output complete ID '09cda40e0e072654'
16/01/2012 20:53:01 : INFO  : Run end  : Mon Jan 16 20:53:00 GMT 2012
