HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/099c4923b0597b91/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/099c4923b0597b91/query.hhm DATE Wed Jan 18 16:54:01 2012 LENG 122 match states, 122 columns in multiple alignment FILT 12 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4483 1.0710 SEQ >ss_pred CCHHHHHHHHHHHHHHHHCCCHHCCCCCCEEEEEEECCCCCCCEEHHHHCCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEECCCEEEEEECCCCCCCC CCEEEEEEECCCCEEEEEEECC >ss_conf 9445788999999998714201013567258998631455662000121366578887657676520156763145967998619749997022673335 7569999973787299987529 >Consensus xxxxxxxxxlxxfxlxxxnxxxxxxxxxxxxxxxxxxxxxlxkxxxxxxVxxEetAIklAExxlxxiYGxeixexqKPyxvtxxxnxWvIeGTxxpxxxl GGVxxIxIxKxDGkILxvxHxK >batch____ MKYSSIFSMLSFFILFACNETAVYGSDENIIFMRYVEKLHLDKYSVKNTVKTETMAIQLAEIYVRYRYGERIAEEEKPYLITELPDSWVVEGAKLPYEVA GGVFIIEINKKNGCVLNFLHSK >UniRef50_B8F9G3(54-139:139) Putative uncharacterized protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9G3_DESAA E=2e-11 s/c=0.82 id=32% cov=60% -------------------------------------------------VPDEETAIRIAEAVWLPIYGPQIYQD-KPFVAKLYGDEWLVKGTYVIPDdl neiMRGGVPYAVIRKIDGKILAVTHTR >UniRef50_A5FGG2(7-115:115) Hypothetical lipoprotein n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FGG2_FLAJ1 E=2e-11 s/c=0.64 id=31% cov=89% --------LLVVFLLIFFNSCSQEKTKSQKVVKSVVDKPNL---VFKDLVPDNETAIKIAEAILVPIYGKKIYK-QRPFVATlKSPNVWAVEGTLHTTK- -GGVAYIEIQKKDCKILKVYHEK >UniRef50_C6V8M1(20-91:91) Putative uncharacterized protein n=3 Tax=Escherichia coli RepID=C6V8M1_ECOBD E=6e-20 s/c=1.37 id=42% cov=59% -------------------------------------------------VNSREMALELSYVYIKYVYGKEKAEFQKPYSITDDNNCWKIEGKQ--PKTL GGNFTILIAKKDGQVLHVIHTK >UniRef50_C6X3U0(4-124:124) Putative uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X3U0_FLAB3 E=2e-17 s/c=0.74 id=37% cov=60% -------------------------------------------------IKEENTAIKVAEPILFEIYGRSKIEGEKPYEAYLIKNYWVINGTVDRYS-F GGAFSIIIDARNSKVINVIHYK >UniRef50_C6M7N1(29-96:96) Putative lipoprotein n=2 Tax=Neisseria RepID=C6M7N1_NEISI E=7e-17 s/c=1.30 id=39% cov=57% ---------------------------------------------------TEQQVLRLTEIYVTQHYGEQTAQAQKPYRVKKDGEHWVISGK--PPKAL GGNFRAVIGA-NGQLEEITHSK >UniRef50_D1N0G5(264-336:336) Putative uncharacterized protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0G5_9BACT E=9e-15 s/c=1.11 id=29% cov=54% -------------------------------------------------------AVKVAETVLVGIYGKEVLR-QRPWRVVESETEFQISGTLAPSSV- GGVAEISIRKSDAGVARYTHGK >UniRef50_D1PST3(68-142:142) Putative uncharacterized protein n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PST3_9BACT E=1e-10 s/c=0.90 id=31% cov=29% ---------------------------------------------------------------------------------------WIITGSKDSISK- GGVAEVTLRKSDGRVIMVTHGK >UniRef50_B2KDJ6(78-147:147) Putative uncharacterized protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KDJ6_ELUMP E=1e-06 s/c=0.77 id=27% cov=57% ----------------------------------------------------EQSAIAAAEEELGYILGQELMSAQKPFKAAGCDNMWVVYGTNE-VGTL SGAVHIILRKQDGKILQVFYEK >UniRef50_C0ZK58(83-161:161) Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZK58_BREBN E=0.0004 s/c=0.58 id=38% cov=39% --------------------------------------------------------------------------EETPFAISYNPiaEAWIIEGTL-PPG WLGGVIYIALAKENGKLLMMYGTK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 K 2 * * * * * * * * 0 * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 Y 3 * * * * * * * * * * * * * * * * * * * 0 3 0 * * * * * * 1000 0 0 S 4 * * * * * * * * * * * * * * * 0 * * * * 4 0 * * * * * * 1000 0 0 S 5 * * * * * * * * * * * * * * * 0 * * * * 5 0 * * * * * * 1000 0 0 I 6 * * * * * * * 0 * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 F 7 * * * * 0 * * * * * * * * * * * * * * * 7 0 * * * * * * 1000 0 0 S 8 * * * * * * * * * * * * * * * 0 * * * * 8 0 * * * * * * 1000 0 0 M 9 * * * * * * * * * 1078 926 * * * * * * * * * 9 0 * * * * * * 1567 0 0 L 10 * * * * * * * * * 0 * * * * * * * * * * 10 0 * * * * * * 1567 0 0 S 11 * * * * * * * * * * * * * * * 926 * 1078 * * 11 0 * * * * * * 1567 0 0 F 12 * * * * 926 * * * * * * * * * * * * 1078 * * 12 0 * * * * * * 1567 0 0 F 13 * * * * 0 * * * * * * * * * * * * * * * 13 0 * * * * * * 1567 0 0 I 14 * * * * * * * 926 * 1078 * * * * * * * * * * 14 0 * * * * * * 1567 0 0 L 15 * * * * * * * * * 0 * * * * * * * * * * 15 0 * * * * * * 1567 0 0 F 16 * * * * 926 * * 1078 * * * * * * * * * * * * 16 0 * * * * * * 1567 0 0 A 17 926 * * * 1078 * * * * * * * * * * * * * * * 17 0 * * * * * * 1567 0 0 C 18 * 926 * * 1078 * * * * * * * * * * * * * * * 18 0 * * * * * * 1567 0 0 N 19 * * * * * * * * * * * 0 * * * * * * * * 19 0 * * * * * * 1567 0 0 E 20 * * * 926 * * * * * * * * * * * 1078 * * * * 20 0 * * * * * * 1567 0 0 T 21 * 1078 * * * * * * * * * * * * * * 926 * * * 21 0 * * * * * * 1567 0 0 A 22 926 * * * * * * * * * * * * * * 1078 * * * * 22 0 * * * * * * 1567 0 0 V 23 * * * * * * * * * * * * * 1078 * * * 926 * * 23 0 * * * * * * 1567 0 0 Y 24 * * * 1078 * * * * * * * * * * * * * * * 926 24 0 * * * * * * 1567 0 0 G 25 * * * * * 926 * * 1078 * * * * * * * * * * * 25 0 * * * * * * 1567 0 0 S 26 * * * * * * * * * * * * * * * 926 1078 * * * 26 0 * * * * * * 1567 0 0 D 27 * * 1619 * * * * * 1497 * * 1642 * * * * * * * * 27 0 * * * * * * 1799 0 0 E 28 * * * 1619 * * * * * * * 1642 * * * 1497 * * * * 28 0 * * * * * * 1799 0 0 N 29 * * * * * * * * * * * 631 * 1497 * * * * * * 29 0 * * * * * * 1799 0 0 I 30 * * * * * * * 631 1497 * * * * * * * * * * * 30 0 * * * * * * 1799 0 0 I 31 * * * * * * * 1619 1642 * * * * * * * * 1497 * * 31 0 * * * * * * 1799 0 0 F 32 * * * * 1619 * * 1642 * * * * * * * * * 1497 * * 32 0 * * * * * * 1799 0 0 M 33 * * * * * * * * 1497 * 631 * * * * * * * * * 33 0 * * * * * * 1799 0 0 R 34 * * * * * * * * * * * * * * 631 1497 * * * * 34 0 * * * * * * 1799 0 0 Y 35 * * * * * * * * 1642 * * * * * * * * 1497 * 1619 35 0 * * * * * * 1799 0 0 V 36 * * * * * * * * * * * * * * * * * 557 * 1642 36 0 * * * * * * 1799 0 0 E 37 * * 1497 631 * * * * * * * * * * * * * * * * 37 0 * * * * * * 1799 0 0 K 38 * * * * * * * * 557 * * * * * * 1642 * * * * 38 0 * * * * * * 1799 0 0 L 39 * * * 1642 * * * * * 1619 * * 1497 * * * * * * * 39 557 * 1642 * * * * 1799 0 0 H 40 * * * * * * 926 * * * * 1078 * * * * * * * * 40 0 * * * * * 0 1567 0 1000 L 41 * * * * * * * * * 0 * * * * * * * * * * 41 926 * 1078 * * 0 * 1567 0 1000 D 42 * * 576 * * 1603 * * * * * * * * * * * * * * 42 0 * * * * * 0 1724 0 1000 K 43 * * * * * * * * 0 * * * * * * * * * * * 43 0 * * * * * 0 1724 0 1000 Y 44 * * * * * * * * * * * * * * * * 1474 * * 644 44 0 * * * * 0 * 1724 0 1000 S 45 * * * * * * * * * * * * * * * 1006 1925 2067 * * 45 0 * * * * * * 1898 0 0 V 46 2018 * * * 2067 * * * * * * * * * * * * 959 * * 46 0 * * * * * * 1898 0 0 K 47 * * * * * * * * 1030 * * * * * 1925 2018 * * * * 47 0 * * * * * * 1898 0 0 N 48 * * 1042 * * * * * * * * 959 * * * * * * * * 48 0 * * * * * * 1898 0 0 T 49 * * * * * * * * * 994 * * * * * * 1994 * * 2018 49 0 * * * * * * 1898 0 0 V 50 * * * * * * * 2529 * * * * * * * * * 275 * * 50 0 * * * * * * 2608 0 0 K 51 * * * * * * * * 1168 * * 2608 1355 * * * * * * * 51 0 * * * * * * 2608 0 0 T 52 * * 1552 2752 * * * * * * * 3022 * * * 2908 1976 * * * 52 0 * * * * * * 2811 0 0 E 53 * * * 543 * * * * 3244 * * 3415 * * 3131 * * * * * 53 0 * * * * * * 3041 0 0 T 54 3244 * * 1309 * * * * * * * 3007 * 1890 * * 3370 * * * 54 0 * * * * * * 3041 0 0 M 55 * * * * * * * 3244 * * 2246 * * 2988 * 2798 1273 * * * 55 0 * * * * * * 3041 0 0 A 56 172 * * * * * * * * * * * * * * * * 3155 * * 56 0 * * * * * * 3225 0 0 I 57 * * * * * * * 997 3685 1694 * * * * * * * 3155 * * 57 0 * * * * * * 3225 0 0 Q 58 2918 * * 2345 * * * * 1410 * * * * 3523 2269 * * * * * 58 0 * * * * * * 3225 0 0 L 59 2918 * * * * * * 1997 * 1336 * * * * * * * 2177 * * 59 0 * * * * * * 3225 0 0 A 60 351 * * * * * * * * * * * * * * 3270 3155 * * * 60 0 * * * * * * 3225 0 0 E 61 * * * 158 * * * * * * * * * * * * * * * 3270 61 0 * * * * * * 3225 0 0 I 62 1997 * * 2918 * * * 1774 * * * * 3198 * * * 3155 3270 * * 62 0 * * * * * * 3225 0 0 Y 63 * * * 2918 * * * 1920 * * * * * * * * * 2269 * 1336 63 0 * * * * * * 3225 0 0 V 64 * * * * * * * 3270 * 1214 * * * * * * * 1774 2531 * 64 0 * * * * * * 3225 0 0 R 65 * * * * 3198 2918 * * 2345 2531 * * * * 3523 * 3155 2398 * * 65 0 * * * * * * 3225 0 0 Y 66 * * * 3198 * 3155 * * * * * 3424 1997 3155 * * * * * 1631 66 0 * * * * * * 3225 0 0 R 67 * * * * * * 3155 727 * * * * * * 2473 * * 3270 * * 67 0 * * * * * * 3225 0 0 Y 68 * * * * * * * * * 2918 * * * * * * * * * 205 68 0 * * * * * * 3225 0 0 G 69 * * * * * 0 * * * * * * * * * * * * * * 69 0 * * * * * * 3225 0 0 E 70 * * * 1852 * * * * 1769 * * * 3392 2149 3198 * * * * * 70 0 * * * * * * 3225 0 0 R 71 * * 3424 1522 * * * * 3690 * * * * 2269 2602 3198 * * * * 71 0 * * * * * * 3225 0 0 I 72 3424 * * * * * * 1567 2234 2918 * * * * * * 3155 3155 * * 72 0 * * * * * * 3225 0 0 A 73 1336 * * * * * * 3198 * 3155 2918 * * * * * * * * 1997 73 117 * 3685 * * * * 3225 0 0 E 74 * * * 1273 * * * * 3458 * * * * 2107 3003 2855 * * * * 74 351 * 2212 * * 0 * 3178 0 1000 E 75 2052 * 2218 1636 3375 2992 * * * * * * * * * * * * * * 75 175 * 3132 * * 0 * 3103 0 1484 E 76 * * * 1133 * * * * * * * * * 878 * * * * * * 76 0 * * * * 0 * 3211 0 1000 K 77 * * * * * * * * 419 * * * * * 2479 * 3780 * * * 77 0 * * * * * * 3300 0 0 P 78 * * * * * * * * * * * * 0 * * * * * * * 78 0 * * * * * * 3300 0 0 Y 79 * * * * 1503 * * * * * * * * * * * * * 3176 898 79 0 * * * * * * 3300 0 0 L 80 3780 * * 2418 * * * * 3058 3650 * * * * 2232 3404 * 2101 * * 80 0 * * * * * * 3300 0 0 I 81 1379 * * * * * * 1602 * * * * * * * * * 1806 * * 81 0 * * * * * * 3300 0 0 T 82 3058 * * * * * * * 2371 * * * * * * 2776 1620 3176 * 3256 82 103 3864 * 0 * * * 3300 1000 0 E 83 * * 3404 1874 * 3058 * * 2549 1894 * * * * * * * * * 3780 83 0 * * * * * * 3300 0 0 L 84 * 3058 2346 * * * * 3256 * 2625 * 3780 * * * 2479 * 3772 * 3455 84 0 * * * * * * 3300 0 0 P 85 * * 3058 3176 * 1908 * * 3256 * * 3404 2177 * * * 3600 * * * 85 109 3780 * 1000 1000 * * 3300 1000 0 D 86 * * 2035 2515 * * * * * * * 1366 * * * * 2373 * * * 86 0 * * * * * * 3300 0 0 S 87 3780 3404 * 2309 * * 3291 * * * 3058 * * * * 2087 * 3864 * 3256 87 110 3772 * 0 * * * 3300 1000 0 W 88 * * * * 3276 * * * * * * * * * * * * * 157 * 88 0 * * * * * * 3377 0 0 V 89 2938 * * * * * * 2704 3682 3450 * * * 3276 * * * 1173 * * 89 0 * * * * * * 3377 0 0 V 90 * * * * * * * 944 * * * * * * * * * 1059 * * 90 0 * * * * * * 3377 0 0 E 91 * * 3913 1367 * * * * 3450 * * 3338 * * * 2399 4083 * * 3225 91 0 * * * * * * 3377 0 0 G 92 * * * * * 0 * * * * * * * * * * * * * * 92 0 * * * * * * 3377 0 0 A 93 3688 * * * * * * * 2606 * * * * * * 2996 660 * * * 93 130 * 3533 * * * * 3377 0 0 K 94 * * * * * * * 3663 2788 1475 * 3147 * 3432 * * * 3197 * 3295 94 455 * 1887 * * * 0 3291 0 1000 L 95 2904 * 1958 2768 * * 2294 * * 3113 * * * * * * * 2809 * * 95 229 * 2768 * * 371 2140 2926 0 2164 P 96 * * * * * * * 3192 * * * * 929 * 3027 2648 3590 * * * 96 0 * * * * 0 * 3105 0 1619 Y 97 * * 3763 * * * * 4083 3913 * * * 1513 * * 3276 3963 3225 * 2503 97 0 * * * * * * 3377 0 0 E 98 * * 3450 3688 * 2312 * * 1762 * * * * 3763 * 1937 * * * * 98 424 3450 2617 2322 322 * * 3377 1000 0 V 99 3276 * * * * * * 3483 2643 * 3220 * * * * * 2179 2243 3214 * 99 305 * 2393 * * 960 1041 3208 0 1542 A 100 2321 * * * 2992 * * * * 1123 * * * * 2218 * * * * * 100 0 * * * * 0 * 3103 0 1835 G 101 * * * * * 163 * * * * * * * * * 3225 * * * * 101 0 * * * * * * 3377 0 0 G 102 * * * * * 0 * * * * * * * * * * * * * * 102 0 * * * * * * 3377 0 0 V 103 2281 * * * * * * * * * * 2606 * * * * * 667 * * 103 0 * * * * * * 3377 0 0 F 104 1773 * * * 1271 * * 3403 * * * * 3450 * * * * 3225 * * 104 0 * * * * * * 3377 0 0 I 105 * * * 2624 * * 3225 2725 * * * * * * 3533 3338 3682 * * 1660 105 0 * * * * * * 3377 0 0 I 106 2491 * * * * * * 390 * * * * * * * * * 4083 * * 106 0 * * * * * * 3377 0 0 E 107 3403 * * 1828 * * * 2281 * 3682 * * * * * 3276 4083 2491 * * 107 0 * * * * * * 3377 0 0 I 108 * * * * * * * 435 * 1941 * * * * * * * * * * 108 0 * * * * * * 3377 0 0 N 109 2536 * 3338 * * 2643 * * * * * 3688 * 2938 1471 * * * * * 109 0 * * * * * * 3377 0 0 K 110 2432 * * * * * * * 296 * * * * * * * * * * * 110 130 * 3533 * * * * 3377 0 0 K 111 * * * 3238 * * * 3295 2035 * * 2731 * 3147 3197 2510 * * * * 111 0 * * * * 0 * 3291 0 1000 N 112 * * 638 * * * * * * * * 1485 * * * * * * * * 112 0 * * * * * * 3377 0 0 G 113 3276 2938 * * * 583 * * * * * * * * * 3338 * * * * 113 0 * * * * * * 3377 0 0 C 114 * 3688 * * * 3276 * * 937 * * * * 2606 2915 * * * * * 114 0 * * * * * * 3377 0 0 V 115 * * * * * * * 1313 * 2467 * * * * * * * 1263 * * 115 0 * * * * * * 3377 0 0 L 116 3276 * * 3533 * * * 2663 * 616 * * * * * * * * * * 116 0 * * * * * * 3377 0 0 N 117 3450 * * 3533 * * 3682 * 2938 * 2704 2000 * 3225 3276 * * * * * 117 0 * * * * * * 3377 0 0 F 118 * * * * 2725 * * 3533 * * 3403 * * * * * * 825 * 3276 118 0 * * * * * * 3377 0 0 L 119 * * * * 3225 3763 * 2040 * 3688 * * * * * * 1556 * * 2656 119 0 * * * * * * 3377 0 0 H 120 * * * * * 3403 325 * * * * * * * * * * * * 3225 120 0 * * * * * * 3377 0 0 S 121 * * * 2547 * 2084 * * * * * * * * * 2118 1922 * * 3338 121 0 * * * * * * 3377 0 0 K 122 * * * * * * * * 138 * * * * * 3450 * * * * * 122 0 * * 0 * * * 3377 0 0 //