71 d2hoxa1 Probab=99.96   E-value=6.9e-28  Score=163.63  Aligned_columns=322  Identities=13%

Q ss_pred             EECCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--------CCCEEEEECCHHHHHHHHHHHHCCCCC---
Q ss_conf             105988999997403556784326768835899999999972--------898799988979999999999627898---
Q batch____        34 LVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELE--------GGAGCVLFPCGAAAVANSILAFIEQGD---  102 (395)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~le~~iA~l~--------g~~~~i~~~sG~~A~~~al~all~~GD---  102 (395)
                      |+....+.......++..-.|.|.+.++|+..+|++.+++++        ...+.+++++.++++++++.+|++|||   
T Consensus        72 ~~~~~~~~~a~~~~~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~  151 (425)
T d2hoxa1          72 YWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATP  151 (425)
T ss_dssp             HHTTSHHHHCCCCCTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCT
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCC
T ss_conf             64114210001124555456545664344528999999999885088678877699946889999999998648886123


Q ss_pred             -----EEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             -----999818775255999986554319178764899999999731644662021022325554478899999999750
Q batch____       103 -----HVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVV  177 (395)
Q Consensus       103 -----~vi~~~~~~~~~~~~~~~~~~~~gv~~~~~d~~d~~~l~~~~~~~t~~v~~~~~~n~~g~~~~i~~i~~~a~~~~  177 (395)
                           +|++..+.|..    ........|.....++ .|.+.++.+++++++++++.+|+||+|.+.+         +.+
T Consensus       152 ~~~p~~v~~~~p~y~~----~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~i~~P~NPtG~v~~---------a~~  217 (425)
T d2hoxa1         152 DAPESKVVAHAPFYPV----FREQTKYFDKKGYVWA-GNAANYVNVSNPEQYIEMVTSPNNPEGLLRH---------AVI  217 (425)
T ss_dssp             TSCCEEEEECSSCCHH----HHHHHHHSCCTTEEEE-EEGGGGTTCSCGGGEEEEEESSCTTTCCCCC---------CSS
T ss_pred             CCCCCEEEECCHHHHH----HHHHHHHCCCCCCCCC-CCHHHHHHHCCCCCEEEEECCCCCCCCEEEE---------EEE
T ss_conf             5677435730023778----9999985599744424-7988999724888579998178888560654---------232


Q ss_pred             CCCEEEEECCCCCCCC-CCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHHHCCH
Q ss_conf             9949998487436842-555421233577412001258876642899819999998873101347646755667762375
Q batch____       178 PDAIIMIDNTWAAGVL-FKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGL  256 (395)
Q Consensus       178 ~g~~vivD~a~~~g~~-~~~~~~g~d~~~~s~sk~~~g~~~~~gG~i~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l  256 (395)
                      +|+++++|+++....+ ..+....-++++.|+||.++-.|-..|..++.++++.+++...+.....+++...+......+
T Consensus       218 ~~~~~i~De~y~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L  297 (425)
T d2hoxa1         218 KGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVL  297 (425)
T ss_dssp             TTCEEEEECTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             39689971432343323333456854999815510123323101899689899999998641057773689999999996


Q ss_pred             HCHH------------HHHHHHHHHHHHHHHHHHHCHHHHCCCCHHHCCCCCHHHHHHHCCCCCCEEEEEEECCCCHHHH
Q ss_conf             0689------------8899873899999988850554200173000558576874110028983248998349998999
Q batch____       257 RTLG------------VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEEL  324 (395)
Q Consensus       257 ~~l~------------~r~~~~~~~a~~ia~~~~~~~~~~~v~~~~l~~~p~~~l~~~~~~~~~~~~sf~l~~~~~~~~~  324 (395)
                      +...            ...........+...+...+........+.++...............+...++++.........
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~~~~~~~  377 (425)
T d2hoxa1         298 KEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCY  377 (425)
T ss_dssp             HHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHH
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHH
T ss_conf             02013456555548999999999999999999999863576300345655432210013778761699867898089999


Q ss_pred             HHHHHHCCCCCEECCCCCCCCEEECCCCHHHCCCCHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHC
Q ss_conf             99998378041544526425401024862101387278748898769999824998999999999988739
Q batch____       325 ANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARIV  395 (395)
Q Consensus       325 ~~~~~~l~~~~i~~s~G~~~sl~~~~~~~~~~~~~~~~~~gi~~~~vRlS~GlE~~~dli~dl~~Al~~i~  395 (395)
                      ..+.+.--....+..||.                        .++.||+|+.  ++++.++.+.+.|+++|
T Consensus       378 ~lL~e~GI~v~pGs~FG~------------------------~~~~vRiSl~--~~~e~ld~~l~rL~~~v  422 (425)
T d2hoxa1         378 QTFQNGRINTQNGVGFEA------------------------SSRYVRLSLI--KTQDDFDQLMYYLKDMV  422 (425)
T ss_dssp             HHHHHTTEECEEGGGGTS------------------------CTTEEEEECS--SCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCEEEECCCCCCC------------------------CCCEEEEEEC--CCHHHHHHHHHHHHHHH
T ss_conf             999966949971702389------------------------8865999913--99899999999999987