BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (239 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P19381 Protein trbH n=18 Tax=Enterobacteriaceae RepID=T...   494   e-138
UniRef50_A9QNR9 TrbH n=1 Tax=Salmonella enterica subsp. enterica...   234   2e-60
UniRef50_UPI0001AF5E05 TrbH n=1 Tax=Salmonella enterica subsp. e...    54   6e-06
UniRef50_B5FH52 VagD n=2 Tax=Enterobacteriaceae RepID=B5FH52_SALDC     47   4e-04

>UniRef50_P19381 Protein trbH n=18 Tax=Enterobacteriaceae RepID=TRBH_ECOLI
          Length = 239

 Score =  494 bits (1271), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCG 60
           MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCG
Sbjct: 1   MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCG 60

Query: 61  SSSVVIQNVNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQVKTFPDTGGFV 120
           SSSVVIQNVNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQVKTFPDTGGFV
Sbjct: 61  SSSVVIQNVNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQVKTFPDTGGFV 120

Query: 121 LYRKNADVGIEHKLQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRVRPTA 180
           LYRKNADVGIEHKLQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRVRPTA
Sbjct: 121 LYRKNADVGIEHKLQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRVRPTA 180

Query: 181 ITSTRFTFSGNATAFGSLTAWLRLLRNTVVSIICLLMWICLVYIHCGIDAGICQRDIRL 239
           ITSTRFTFSGNATAFGSLTAWLRLLRNTVVSIICLLMWICLVYIHCGIDAGICQRDIRL
Sbjct: 181 ITSTRFTFSGNATAFGSLTAWLRLLRNTVVSIICLLMWICLVYIHCGIDAGICQRDIRL 239


>UniRef50_A9QNR9 TrbH n=1 Tax=Salmonella enterica subsp. enterica serovar
           Choleraesuis RepID=A9QNR9_SALET
          Length = 229

 Score =  234 bits (597), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 129/170 (75%)

Query: 1   MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCG 60
           M  S PV +SQ+ HTFK PGV+  NNQSP A +T +HLI+WPDRASL GK C  L  + G
Sbjct: 1   MAVSAPVLSSQSTHTFKLPGVVRDNNQSPAACVTGNHLIEWPDRASLTGKLCPDLPRMGG 60

Query: 61  SSSVVIQNVNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQVKTFPDTGGFV 120
              V+IQN+ +GNK L HSEI+F HLAFF T+  LHQ DR D HSPLVQVKT PD G FV
Sbjct: 61  GRRVIIQNIKSGNKPLYHSEISFGHLAFFGTVNQLHQGDRADTHSPLVQVKTLPDAGRFV 120

Query: 121 LYRKNADVGIEHKLQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPA 170
            YR+NADV I+HKLQHQNDS SC  GCS LSIKSALTLFPSNHSSH SPA
Sbjct: 121 FYRENADVSIQHKLQHQNDSRSCTEGCSRLSIKSALTLFPSNHSSHDSPA 170


>UniRef50_UPI0001AF5E05 TrbH n=1 Tax=Salmonella enterica subsp. enterica serovar
          Tennessee str. CDC07-0191 RepID=UPI0001AF5E05
          Length = 68

 Score = 53.5 bits (127), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 1  MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGV 58
          M +  PVF+S   + FK   ++ +N+QS   GM  +HLI  PDR SL G+F + L G+
Sbjct: 1  MQKLAPVFDSDTRNAFKLAEIVCNNDQSAATGMASNHLIIRPDRCSLAGQFGTDLTGM 58


>UniRef50_B5FH52 VagD n=2 Tax=Enterobacteriaceae RepID=B5FH52_SALDC
          Length = 273

 Score = 47.4 bits (111), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 10/218 (4%)

Query: 6   PVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCGSSSVV 65
           PVF  QA +  KFP +I H + +   GM  +  +   DR   + +    L G    S++ 
Sbjct: 49  PVFQYQARYPLKFPRIIRHQHGTGGDGMPGNRRVVRTDRRPGEAQCHLNLRGGVYRSAIP 108

Query: 66  IQN-VNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQ---VKTFPDTGGFVL 121
            Q+ + AG + +D  + T R L       HL   D  D  +   Q   +K        + 
Sbjct: 109 GQDGIEAGAERVDQLDETRRGLRSGGAEAHLGVGDGRDHDTVAAQHRLLKALQHRFRLLA 168

Query: 122 YRKNADVGIEHK-----LQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRV 176
           + +  D GIEH      L H +   S +   S  +IKS        +   V   G  + +
Sbjct: 169 HDERTDTGIEHIGLRTWLFHSSKRPSSLTTSSRSAIKSGSAFSSCANEPQVGRTGRRMML 228

Query: 177 RPTAITSTRFTFSGNATAFGSLTAWLRLLR-NTVVSII 213
            P+   S+  T S + +    +   L  L+ +TV+ I+
Sbjct: 229 SPSRTISSSLTPSKSRSRGRRMARLLPFLKMDTVLMIL 266


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P19381 Protein trbH n=18 Tax=Enterobacteriaceae RepID=T...   399   e-110
UniRef50_B5FH52 VagD n=2 Tax=Enterobacteriaceae RepID=B5FH52_SALDC    275   1e-72
UniRef50_A9QNR9 TrbH n=1 Tax=Salmonella enterica subsp. enterica...   271   1e-71
UniRef50_UPI0001AF5E05 TrbH n=1 Tax=Salmonella enterica subsp. e...    92   1e-17

Sequences not found previously or not previously below threshold:

UniRef50_Q84A08 Putative uncharacterized protein orf14 n=1 Tax=E...   136   6e-31

>UniRef50_P19381 Protein trbH n=18 Tax=Enterobacteriaceae RepID=TRBH_ECOLI
          Length = 239

 Score =  399 bits (1024), Expect = e-110,   Method: Composition-based stats.
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCG 60
           MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCG
Sbjct: 1   MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCG 60

Query: 61  SSSVVIQNVNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQVKTFPDTGGFV 120
           SSSVVIQNVNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQVKTFPDTGGFV
Sbjct: 61  SSSVVIQNVNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQVKTFPDTGGFV 120

Query: 121 LYRKNADVGIEHKLQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRVRPTA 180
           LYRKNADVGIEHKLQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRVRPTA
Sbjct: 121 LYRKNADVGIEHKLQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRVRPTA 180

Query: 181 ITSTRFTFSGNATAFGSLTAWLRLLRNTVVSIICLLMWICLVYIHCGIDAGICQRDIRL 239
           ITSTRFTFSGNATAFGSLTAWLRLLRNTVVSIICLLMWICLVYIHCGIDAGICQRDIRL
Sbjct: 181 ITSTRFTFSGNATAFGSLTAWLRLLRNTVVSIICLLMWICLVYIHCGIDAGICQRDIRL 239


>UniRef50_B5FH52 VagD n=2 Tax=Enterobacteriaceae RepID=B5FH52_SALDC
          Length = 273

 Score =  275 bits (702), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 10/218 (4%)

Query: 6   PVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCGSSSVV 65
           PVF  QA +  KFP +I H + +   GM  +  +   DR   + +    L G    S++ 
Sbjct: 49  PVFQYQARYPLKFPRIIRHQHGTGGDGMPGNRRVVRTDRRPGEAQCHLNLRGGVYRSAIP 108

Query: 66  IQN-VNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQ---VKTFPDTGGFVL 121
            Q+ + AG + +D  + T R L       HL   D  D  +   Q   +K        + 
Sbjct: 109 GQDGIEAGAERVDQLDETRRGLRSGGAEAHLGVGDGRDHDTVAAQHRLLKALQHRFRLLA 168

Query: 122 YRKNADVGIEHK-----LQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRV 176
           + +  D GIEH      L H +   S +   S  +IKS        +   V   G  + +
Sbjct: 169 HDERTDTGIEHIGLRTWLFHSSKRPSSLTTSSRSAIKSGSAFSSCANEPQVGRTGRRMML 228

Query: 177 RPTAITSTRFTFSGNATAFGSLTAWLRLLR-NTVVSII 213
            P+   S+  T S + +    +   L  L+ +TV+ I+
Sbjct: 229 SPSRTISSSLTPSKSRSRGRRMARLLPFLKMDTVLMIL 266


>UniRef50_A9QNR9 TrbH n=1 Tax=Salmonella enterica subsp. enterica serovar
           Choleraesuis RepID=A9QNR9_SALET
          Length = 229

 Score =  271 bits (693), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 115/172 (66%), Positives = 129/172 (75%)

Query: 1   MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCG 60
           M  S PV +SQ+ HTFK PGV+  NNQSP A +T +HLI+WPDRASL GK C  L  + G
Sbjct: 1   MAVSAPVLSSQSTHTFKLPGVVRDNNQSPAACVTGNHLIEWPDRASLTGKLCPDLPRMGG 60

Query: 61  SSSVVIQNVNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQVKTFPDTGGFV 120
              V+IQN+ +GNK L HSEI+F HLAFF T+  LHQ DR D HSPLVQVKT PD G FV
Sbjct: 61  GRRVIIQNIKSGNKPLYHSEISFGHLAFFGTVNQLHQGDRADTHSPLVQVKTLPDAGRFV 120

Query: 121 LYRKNADVGIEHKLQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGV 172
            YR+NADV I+HKLQHQNDS SC  GCS LSIKSALTLFPSNHSSH SPA  
Sbjct: 121 FYRENADVSIQHKLQHQNDSRSCTEGCSRLSIKSALTLFPSNHSSHDSPARR 172


>UniRef50_Q84A08 Putative uncharacterized protein orf14 n=1 Tax=Escherichia coli
           RepID=Q84A08_ECOLX
          Length = 150

 Score =  136 bits (343), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 5/138 (3%)

Query: 81  ITFRHLAFFCTIYHLHQSDRTDAHSPLVQ---VKTFPDTGGFVLYRKNADVGIEHKLQ-H 136
           +  R L       HL      D ++   Q   ++        + + + ADVG+EH    H
Sbjct: 1   MARRGLRAGGAEAHLGIRHGRDHNAITAQHRLLQALQHRCRLLAHDERADVGVEHPGFLH 60

Query: 137 QNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRVRPTAITSTRFTFSGNATAFG 196
            +   S +   S  +IKS   L    +   V   G  + + P+   S+  T S + +   
Sbjct: 61  GSKRPSSLTTSSRSAIKSGSALSSCANEPQVGRTGRRMMLSPSRTISSSLTPSKSRSRGR 120

Query: 197 SLTAWLRLLR-NTVVSII 213
            +   L  L   TV  + 
Sbjct: 121 RMARLLPFLNIETVRMVF 138


>UniRef50_UPI0001AF5E05 TrbH n=1 Tax=Salmonella enterica subsp. enterica serovar
          Tennessee str. CDC07-0191 RepID=UPI0001AF5E05
          Length = 68

 Score = 92.1 bits (227), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 1  MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGV 58
          M +  PVF+S   + FK   ++ +N+QS   GM  +HLI  PDR SL G+F + L G+
Sbjct: 1  MQKLAPVFDSDTRNAFKLAEIVCNNDQSAATGMASNHLIIRPDRCSLAGQFGTDLTGM 58


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P19381 Protein trbH n=18 Tax=Enterobacteriaceae RepID=T...   374   e-102
UniRef50_B5FH52 VagD n=2 Tax=Enterobacteriaceae RepID=B5FH52_SALDC    266   6e-70
UniRef50_A9QNR9 TrbH n=1 Tax=Salmonella enterica subsp. enterica...   255   9e-67
UniRef50_Q84A08 Putative uncharacterized protein orf14 n=1 Tax=E...   160   2e-38
UniRef50_UPI0001AF5E05 TrbH n=1 Tax=Salmonella enterica subsp. e...    89   1e-16

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_P19381 Protein trbH n=18 Tax=Enterobacteriaceae RepID=TRBH_ECOLI
          Length = 239

 Score =  374 bits (959), Expect = e-102,   Method: Composition-based stats.
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCG 60
           MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCG
Sbjct: 1   MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCG 60

Query: 61  SSSVVIQNVNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQVKTFPDTGGFV 120
           SSSVVIQNVNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQVKTFPDTGGFV
Sbjct: 61  SSSVVIQNVNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQVKTFPDTGGFV 120

Query: 121 LYRKNADVGIEHKLQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRVRPTA 180
           LYRKNADVGIEHKLQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRVRPTA
Sbjct: 121 LYRKNADVGIEHKLQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRVRPTA 180

Query: 181 ITSTRFTFSGNATAFGSLTAWLRLLRNTVVSIICLLMWICLVYIHCGIDAGICQRDIRL 239
           ITSTRFTFSGNATAFGSLTAWLRLLRNTVVSIICLLMWICLVYIHCGIDAGICQRDIRL
Sbjct: 181 ITSTRFTFSGNATAFGSLTAWLRLLRNTVVSIICLLMWICLVYIHCGIDAGICQRDIRL 239


>UniRef50_B5FH52 VagD n=2 Tax=Enterobacteriaceae RepID=B5FH52_SALDC
          Length = 273

 Score =  266 bits (679), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 53/218 (24%), Positives = 88/218 (40%), Gaps = 10/218 (4%)

Query: 6   PVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCGSSSVV 65
           PVF  QA +  KFP +I H + +   GM  +  +   DR   + +    L G    S++ 
Sbjct: 49  PVFQYQARYPLKFPRIIRHQHGTGGDGMPGNRRVVRTDRRPGEAQCHLNLRGGVYRSAIP 108

Query: 66  IQN-VNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQ---VKTFPDTGGFVL 121
            Q+ + AG + +D  + T R L       HL   D  D  +   Q   +K        + 
Sbjct: 109 GQDGIEAGAERVDQLDETRRGLRSGGAEAHLGVGDGRDHDTVAAQHRLLKALQHRFRLLA 168

Query: 122 YRKNADVGIEHK-----LQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRV 176
           + +  D GIEH      L H +   S +   S  +IKS        +   V   G  + +
Sbjct: 169 HDERTDTGIEHIGLRTWLFHSSKRPSSLTTSSRSAIKSGSAFSSCANEPQVGRTGRRMML 228

Query: 177 RPTAITSTRFTFSGNATAFGSLTAWLRLLR-NTVVSII 213
            P+   S+  T S + +    +   L  L+ +TV+ I+
Sbjct: 229 SPSRTISSSLTPSKSRSRGRRMARLLPFLKMDTVLMIL 266


>UniRef50_A9QNR9 TrbH n=1 Tax=Salmonella enterica subsp. enterica serovar
           Choleraesuis RepID=A9QNR9_SALET
          Length = 229

 Score =  255 bits (652), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 115/172 (66%), Positives = 129/172 (75%)

Query: 1   MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGVCG 60
           M  S PV +SQ+ HTFK PGV+  NNQSP A +T +HLI+WPDRASL GK C  L  + G
Sbjct: 1   MAVSAPVLSSQSTHTFKLPGVVRDNNQSPAACVTGNHLIEWPDRASLTGKLCPDLPRMGG 60

Query: 61  SSSVVIQNVNAGNKSLDHSEITFRHLAFFCTIYHLHQSDRTDAHSPLVQVKTFPDTGGFV 120
              V+IQN+ +GNK L HSEI+F HLAFF T+  LHQ DR D HSPLVQVKT PD G FV
Sbjct: 61  GRRVIIQNIKSGNKPLYHSEISFGHLAFFGTVNQLHQGDRADTHSPLVQVKTLPDAGRFV 120

Query: 121 LYRKNADVGIEHKLQHQNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGV 172
            YR+NADV I+HKLQHQNDS SC  GCS LSIKSALTLFPSNHSSH SPA  
Sbjct: 121 FYRENADVSIQHKLQHQNDSRSCTEGCSRLSIKSALTLFPSNHSSHDSPARR 172


>UniRef50_Q84A08 Putative uncharacterized protein orf14 n=1 Tax=Escherichia coli
           RepID=Q84A08_ECOLX
          Length = 150

 Score =  160 bits (406), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 50/138 (36%), Gaps = 5/138 (3%)

Query: 81  ITFRHLAFFCTIYHLHQSDRTDAHSPLVQ---VKTFPDTGGFVLYRKNADVGIEHKLQ-H 136
           +  R L       HL      D ++   Q   ++        + + + ADVG+EH    H
Sbjct: 1   MARRGLRAGGAEAHLGIRHGRDHNAITAQHRLLQALQHRCRLLAHDERADVGVEHPGFLH 60

Query: 137 QNDSLSCIPGCSLLSIKSALTLFPSNHSSHVSPAGVMIRVRPTAITSTRFTFSGNATAFG 196
            +   S +   S  +IKS   L    +   V   G  + + P+   S+  T S + +   
Sbjct: 61  GSKRPSSLTTSSRSAIKSGSALSSCANEPQVGRTGRRMMLSPSRTISSSLTPSKSRSRGR 120

Query: 197 SLTAWLRLLR-NTVVSII 213
            +   L  L   TV  + 
Sbjct: 121 RMARLLPFLNIETVRMVF 138


>UniRef50_UPI0001AF5E05 TrbH n=1 Tax=Salmonella enterica subsp. enterica serovar
          Tennessee str. CDC07-0191 RepID=UPI0001AF5E05
          Length = 68

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 1  MNRSTPVFNSQAAHTFKFPGVISHNNQSPTAGMTCDHLIKWPDRASLKGKFCSYLAGV 58
          M +  PVF+S   + FK   ++ +N+QS   GM  +HLI  PDR SL G+F + L G+
Sbjct: 1  MQKLAPVFDSDTRNAFKLAEIVCNNDQSAATGMASNHLIIRPDRCSLAGQFGTDLTGM 58


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.319    0.135    0.354 

Lambda     K      H
   0.267   0.0412    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,246,955,663
Number of Sequences: 3077464
Number of extensions: 44819926
Number of successful extensions: 170697
Number of sequences better than 1.0e-01: 6
Number of HSP's better than  0.1 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 170674
Number of HSP's gapped (non-prelim): 15
length of query: 239
length of database: 1,040,396,356
effective HSP length: 125
effective length of query: 114
effective length of database: 655,713,356
effective search space: 74751322584
effective search space used: 74751322584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 91 (39.7 bits)