Phyre 2 alignment of P0CE52 with c2ky4A_

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Job Description | P0CE52
Confidence | 22.42% | Date | Thu Jan 5 11:30:20 GMT 2012
Rank | 12 | Aligned Residues | 45
% Identity | 16% | Template | c2ky4A_
PDB info | PDB header:photosynthesis | Chain: A: PDB Molecule:phycobilisome linker polypeptide; | PDBTitle: solution nmr structure of the pbs linker domain of phycobilisome2 linker polypeptide from anabaena sp. northeast structural genomics3 consortium target nsr123e
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 63 | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | G | R | R | P | Y | P | L | E | T | M | L | R | I | H | C | M | Q | H | W | Y | N | L | S | D | G | A | M | E | D | A | L | Y | E | I | A | S | M | R | L | F | A | R | L | S | L | D | S | A | L | P
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |
Template Sequence |  | G | R | A | P | I | D | Q | A | E | I | R | K | Y | N | Q | I | L | A | T | Q | G | I | . | . | R | A | F | I | N | A | L | V | N | S | Q | E | Y | N | E | V | F | G | . | . | . | E | D | T | V | P
Template Known Secondary structure |  | S | S |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  | . | . |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  | S |  | . | . | . | S | S | B |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 91 | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |  |  | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 |  |  |  | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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