Phyre 2 alignment of P0CE52 with d1r6ra_

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Job Description | P0CE52
Confidence | 5.91% | Date | Thu Jan 5 11:30:20 GMT 2012
Rank | 37 | Aligned Residues | 21
% Identity | 10% | Template | d1r6ra_
SCOP info | Flavivirus capsid protein C | Flavivirus capsid protein C | Flavivirus capsid protein C
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 97 | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | S | M | R | L | F | A | R | L | S | L | D | S | A | L | P | D | R | T | T | I | M | N | F | R | H
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | V | A | F | L | R | F | L | T | I | . | . | . | . | . | P | P | T | A | G | I | L | K | R | W | G | T
Template Known Secondary structure |  |  |  |  |  |  |  |  | T |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | T | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 51 | . | . | . | . | . | . | . | . |  |  |  |  |  | 60 | . | . | . | . | . | . | . | . | . | 70 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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