08/01/2012 13:25:29 : INFO  : Run start: Sun Jan  8 13:25:28 GMT 2012
08/01/2012 13:25:36 : INFO  : Initialised job
08/01/2012 13:25:38 : INFO  : Renaming log file 'phyre2_20120108_132527.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/08704bce25c266ce/phyre_20120108_132527.log'
08/01/2012 13:25:40 : INFO  : Initialised job:
Sequence
>batch____
MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMVEVIEPFYPKA
GNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDRTTIMNF
RHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQRDPEMHQTK
KGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQ
REELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGF
VKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH

08/01/2012 13:25:41 : INFO  : Checked sequence
08/01/2012 13:25:45 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 13:25:47 : INFO  : PSI-BLAST 3 iterations
08/01/2012 13:27:09 : INFO  : PSI-BLAST 5 iterations
08/01/2012 13:28:17 : INFO  : Finished PSI-BLAST
08/01/2012 13:28:21 : INFO  : Running Buildali to generate a3m file
08/01/2012 13:36:13 : INFO  : Converting to HMM
08/01/2012 13:36:17 : INFO  : Calibrating HMM
08/01/2012 13:36:36 : INFO  : Searching HMM database
08/01/2012 13:42:47 : INFO  : Finished buildali
08/01/2012 13:42:50 : INFO  : Predicting secondary structure
08/01/2012 13:43:02 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 13:43:04 : INFO  : Predicting Disordered regions
08/01/2012 13:43:10 : INFO  : Predicted Disorder (Disopred)
08/01/2012 13:43:13 : INFO  : Running memsat_svm check
08/01/2012 13:46:42 : INFO  : Running memsat_svm full
08/01/2012 13:56:56 : INFO  : Predicted Transmembrane (memsat_svm) ID '08704bce25c266ce'
08/01/2012 13:56:59 : INFO  : Initialising fold library search
08/01/2012 13:57:04 : INFO  : Initialised search input
08/01/2012 13:57:07 : INFO  : Building Ensemble models
08/01/2012 13:57:12 : INFO  : Building hh.d1musa_.model.1.pdb
08/01/2012 13:57:35 : INFO  : Building hh.c3hefB_.model.2.pdb
08/01/2012 13:57:54 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/08704bce25c266ce/hh.c3hefB_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/08704bce25c266ce/c3hefB_.4.pdb
08/01/2012 13:58:00 : INFO  : Building d1musa_.1.pdb
08/01/2012 13:58:23 : INFO  : Building d1b7ea_.2.pdb
08/01/2012 13:58:45 : INFO  : Building d1cxqa_.3.pdb
08/01/2012 13:59:08 : INFO  : Building c3hefB_.4.pdb
08/01/2012 13:59:33 : INFO  : Building d1asua_.5.pdb
08/01/2012 13:59:56 : INFO  : Building c3nf9A_.6.pdb
08/01/2012 14:00:19 : INFO  : Building d1a9xa1.7.pdb
08/01/2012 14:00:42 : INFO  : Building d1c0ma2.8.pdb
08/01/2012 14:01:04 : INFO  : Building c1c0mA_.9.pdb
08/01/2012 14:01:26 : INFO  : Building d1slma1.10.pdb
08/01/2012 14:01:47 : INFO  : Building c3ohwB_.11.pdb
08/01/2012 14:02:08 : INFO  : Building c2ky4A_.12.pdb
08/01/2012 14:02:30 : INFO  : Building c2l3wA_.13.pdb
08/01/2012 14:02:53 : INFO  : Building d1k78a1.14.pdb
08/01/2012 14:03:14 : INFO  : Building c3pruD_.15.pdb
08/01/2012 14:03:35 : INFO  : Building c2l06A_.16.pdb
08/01/2012 14:03:56 : INFO  : Building d1hyva_.17.pdb
08/01/2012 14:04:17 : INFO  : Building c1q2iA_.18.pdb
08/01/2012 14:04:38 : INFO  : Building d1exqa_.19.pdb
08/01/2012 14:05:00 : INFO  : Building c3pvpA_.20.pdb
08/01/2012 14:06:11 : INFO  : Finished HH model building
08/01/2012 14:06:14 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 14:07:36 : INFO  : html domain output complete ID '08704bce25c266ce'
08/01/2012 14:28:36 : INFO  : Run end  : Sun Jan  8 14:28:34 GMT 2012
