Phyre 2 alignment of P0CE52 with d2v9va2

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Job Description | P0CE52
Confidence | 4.49% | Date | Thu Jan 5 11:30:20 GMT 2012
Rank | 56 | Aligned Residues | 35
% Identity | 11% | Template | d2v9va2
SCOP info | DNA/RNA-binding 3-helical bundle | "Winged helix" DNA-binding domain | C-terminal fragment of elongation factor SelB
Resolution | 1.10

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 119 | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | N | F | R | H | L | L | E | Q | H | Q | L | A | R | Q | L | F | K | T | I | N | R | W | L | A | E | A | G | V | M | M | T | Q | G | T | L | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | L | R | S | R | Y | F | . | S | R | L | P | A | R | V | Y | Q | A | L | L | E | E | W | S | R | E | G | R | L | Q | L | A | A | N | T | V
Template Known Secondary structure |  |  |  |  |  |  |  |  | . | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  | S | S |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 468 | . | 470 | . | . | . | . |  | . | . | . | . | . | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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