BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (210 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q46941 Uncharacterized protein yqeH n=35 Tax=Enterobact... 441 e-123 UniRef50_C3SWA2 Putative uncharacterized protein n=11 Tax=Entero... 436 e-121 UniRef50_B0BF91 Putative uncharacterized protein n=9 Tax=Enterob... 199 5e-50 UniRef50_B4SXG3 RmbA n=36 Tax=Enterobacteriaceae RepID=B4SXG3_SALNS 164 1e-39 UniRef50_C8Q4X9 Response regulator receiver protein n=1 Tax=Pant... 107 2e-22 UniRef50_C8Q4Z8 Transcriptional regulator, LuxR family n=1 Tax=P... 105 1e-21 UniRef50_D2TJM7 Putative regulatory protein n=1 Tax=Citrobacter ... 80 3e-14 UniRef50_Q9AME2 Probable HTH-type transcriptional regulator matA... 58 3e-07 UniRef50_D2TRD6 LuxR-family transcriptional regulator n=1 Tax=Ci... 41 0.025 >UniRef50_Q46941 Uncharacterized protein yqeH n=35 Tax=Enterobacteriaceae RepID=YQEH_ECOLI Length = 210 Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/210 (100%), Positives = 210/210 (100%) Query: 1 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNH 60 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNH Sbjct: 1 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNH 60 Query: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISA 120 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISA Sbjct: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISA 120 Query: 121 VIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI 180 VIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI Sbjct: 121 VIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI 180 Query: 181 RSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 RSIYAYKQRIEKRMGGKINELFIRSHSVQH Sbjct: 181 RSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 >UniRef50_C3SWA2 Putative uncharacterized protein n=11 Tax=Enterobacteriaceae RepID=C3SWA2_ECOLX Length = 230 Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/210 (98%), Positives = 208/210 (99%) Query: 1 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNH 60 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMW EESSYFNRGVVEGILTKNH Sbjct: 21 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWSEESSYFNRGVVEGILTKNH 80 Query: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISA 120 NARLSGYIFVDFSVSFLRLFLEKDWIDYLAS+DMGIVLVSDRNMQSLANYWRKHNSAISA Sbjct: 81 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASSDMGIVLVSDRNMQSLANYWRKHNSAISA 140 Query: 121 VIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI 180 VIYNDDGLDVANEKIRQLFIGRYLSFT GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI Sbjct: 141 VIYNDDGLDVANEKIRQLFIGRYLSFTRGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI 200 Query: 181 RSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 RSIYAYKQRIEKRMGGKINELFIRSHSVQH Sbjct: 201 RSIYAYKQRIEKRMGGKINELFIRSHSVQH 230 >UniRef50_B0BF91 Putative uncharacterized protein n=9 Tax=Enterobacteriaceae RepID=B0BF91_ECOLX Length = 209 Score = 199 bits (506), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 93/202 (46%), Positives = 135/202 (66%) Query: 7 YKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSG 66 Y + C SC C++ P S R+ +C + CFC WPE S YF+ G++EG+L +N+N G Sbjct: 8 YGRINCMSCPSQCELKPNASLRVSFCQDYCFCTWPEGSGYFSLGIMEGLLKQNYNNLYLG 67 Query: 67 YIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDD 126 IFVDFS+S LR F + WIDYL T + IV+V D+ ++ LANYW KH+ I VIY D Sbjct: 68 CIFVDFSISHLRFFTNERWIDYLIETKLKIVIVCDKYLKPLANYWFKHSKDIFLVIYQQD 127 Query: 127 GLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAY 186 L +A EK+++ FI + +F GG +L+++EF ++ ++SG Q+A+ L++DIR+IYA Sbjct: 128 RLTLACEKLKKRFIYQRDAFFGGESLSELEFAVLSALISGDGCLQLADELNVDIRTIYAA 187 Query: 187 KQRIEKRMGGKINELFIRSHSV 208 K+R EK+MG IN LF SHS+ Sbjct: 188 KRRAEKKMGADINTLFRFSHSL 209 >UniRef50_B4SXG3 RmbA n=36 Tax=Enterobacteriaceae RepID=B4SXG3_SALNS Length = 205 Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 75/190 (39%), Positives = 117/190 (61%) Query: 12 CNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYIFVD 71 C SC + CQ+ P+ + R+QYC N+ F +WP+ +++ +G +E +L HN SG+IFVD Sbjct: 11 CISCDLSCQLFPDSAVRVQYCHNAAFSIWPDGNAFLKKGFIEKLLLDRHNHLSSGFIFVD 70 Query: 72 FSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVA 131 FS LR F + W D LA + M IVL+SDR++ LANYW ++ I +IY+DD V Sbjct: 71 FSFPNLRRFTDLQWADSLADSGMHIVLISDRSLTPLANYWILKSNKIQGIIYSDDDDIVQ 130 Query: 132 NEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 +K+ +LF GR + G TL EF ++ VSG + QI + ++DI+ +Y +K R+E Sbjct: 131 QQKMHRLFTGRLANSKRGRTLNYTEFILLKRFVSGISIQQIVNIDNIDIKKLYVHKLRLE 190 Query: 192 KRMGGKINEL 201 ++G I ++ Sbjct: 191 NKLGHSIQKI 200 >UniRef50_C8Q4X9 Response regulator receiver protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q4X9_9ENTR Length = 201 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 97/176 (55%) Query: 23 PEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLE 82 P + +Q ++ + +WP+ + Y G+ + K HN +IFVDFS ++ F + Sbjct: 19 PAQLSDMQDHSDVEYAIWPDRNYYLRLGIHATLREKQHNHLKFSFIFVDFSHYNIKFFSD 78 Query: 83 KDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGR 142 DWI LA + G++L+SD M +LA++W KH+ I+ VIY+ D N+KI+ + IGR Sbjct: 79 ADWIKNLARSGSGLILLSDYRMDNLASWWWKHHQRIATVIYSSDCQQTINKKIKDVLIGR 138 Query: 143 YLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKI 198 + + +LT E ++ +V Y +IA+ L +D + +Y + ++K + ++ Sbjct: 139 WGNGVKAGSLTTSEVEVLNLLVREYTLTEIADSLQLDKKKLYNIRFSLQKNLTVRL 194 >UniRef50_C8Q4Z8 Transcriptional regulator, LuxR family n=1 Tax=Pantoea sp. At-9b RepID=C8Q4Z8_9ENTR Length = 206 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 99/190 (52%) Query: 9 SLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYI 68 +L+C C + C+I +E +++C + +WPE + Y + E I N + Sbjct: 8 ALSCMGCRLGCRIGGDEDFNVEFCTDKKLVLWPEGNDYLKLALHELIFKGNGCELSEDTL 67 Query: 69 FVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGL 128 +D S+ L LF+ +W+ +L++ MG+VL+ DR M ++A+YW + +++I VI D G+ Sbjct: 68 IIDCSLRNLGLFINDEWLTFLSAQGMGMVLIPDRRMIAIAHYWWRKSTSIKGVISTDAGM 127 Query: 129 DVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQ 188 +++ G + T+ E ++ + +G +IA +L ++S+Y +K Sbjct: 128 GNFMRDLKKRLCGGSDRQSKTPVATEREMHVLAMIYAGRTVQEIATLLGCSVKSVYIHKS 187 Query: 189 RIEKRMGGKI 198 I+K+MG I Sbjct: 188 AIKKKMGNDI 197 >UniRef50_D2TJM7 Putative regulatory protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJM7_CITRO Length = 211 Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 94/196 (47%), Gaps = 4/196 (2%) Query: 12 CNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARL-SGYIFV 70 C C + C + C +WP ++ F + IL++N L + + Sbjct: 11 CADCQLRCPHAINTLLKTTSCGTIKVAIWPGDNPLFTDSLFY-ILSENDKPALHEDLLLI 69 Query: 71 DFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDV 130 DF + + F++ DW++ T IVLV DR MQ+LA+YW K + A++ + DG Sbjct: 70 DFCLDNIAFFIDDDWLEGWKKTGARIVLVVDRFMQALAHYWHKKHPALTLLPVTGDGGSQ 129 Query: 131 ANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRI 190 + + G+ + G +T E +++ ++G + ++A VL+ ++++Y+ + + Sbjct: 130 FLRDLENVLNGQSIMPDGVTAITNNEISVLRKRITGLSAQRVAAVLNCSLKTVYSCQYSL 189 Query: 191 EKRMG--GKINELFIR 204 +++G ++ +L I Sbjct: 190 CRKLGAPARLEKLIIE 205 >UniRef50_Q9AME2 Probable HTH-type transcriptional regulator matA n=56 Tax=Bacteria RepID=MATA_ECOLX Length = 196 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 13/172 (7%) Query: 39 MWPEESSYFNRGVVEGILTKNHNARLS------GYIFVDFSVSFLRLFLEKD--WIDYLA 90 +W +YF +G+ E I+ + LS ++F++ + L F+ +D W+ A Sbjct: 27 IWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLNTDSLTEFINRDNEWLS--A 84 Query: 91 STDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYL-SFTGG 149 +VL++ R ++LANYW +NS I V+Y D+ E + + GR+L Sbjct: 85 VKGKQVVLIAARKSEALANYWY-YNSNIRGVVYAGLSRDIRKE-LAYVINGRFLRKDIKK 142 Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINEL 201 + +T E I+ G P IA + + ++++Y +++ E ++ K+ +L Sbjct: 143 DKITDREMEIIRMTAQGMLPKSIARIENCSVKTVYTHRRNAEAKLYSKLYKL 194 >UniRef50_D2TRD6 LuxR-family transcriptional regulator n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TRD6_CITRO Length = 221 Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 34/48 (70%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKIN 199 L++ + ++ YM GYN +IA+++++ ++I+A+K RI +R+G K N Sbjct: 143 LSKKQLQVIQYMRQGYNVQRIAKLMNVSAKTIHAHKYRIMQRIGTKGN 190 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q46941 Uncharacterized protein yqeH n=35 Tax=Enterobact... 298 8e-80 UniRef50_C3SWA2 Putative uncharacterized protein n=11 Tax=Entero... 293 2e-78 UniRef50_B0BF91 Putative uncharacterized protein n=9 Tax=Enterob... 253 4e-66 UniRef50_C8Q4Z8 Transcriptional regulator, LuxR family n=1 Tax=P... 236 3e-61 UniRef50_B4SXG3 RmbA n=36 Tax=Enterobacteriaceae RepID=B4SXG3_SALNS 234 1e-60 UniRef50_D2TJM7 Putative regulatory protein n=1 Tax=Citrobacter ... 221 2e-56 UniRef50_C8Q4X9 Response regulator receiver protein n=1 Tax=Pant... 207 2e-52 UniRef50_Q9AME2 Probable HTH-type transcriptional regulator matA... 152 7e-36 Sequences not found previously or not previously below threshold: UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromon... 56 9e-07 UniRef50_C1ZGK9 Response regulator containing a CheY-like receiv... 55 2e-06 UniRef50_B1KE04 Two component transcriptional regulator, LuxR fa... 53 6e-06 UniRef50_A4TJY3 Two-component response regulator n=27 Tax=Yersin... 52 1e-05 UniRef50_C1D8M5 Probable transcriptional regulatory, LuxR family... 52 1e-05 UniRef50_Q2RYV1 Two-component response regulator n=1 Tax=Salinib... 50 4e-05 UniRef50_A6CG81 DNA-binding response regulator, LuxR family prot... 49 1e-04 UniRef50_Q6ML78 Two-component response regulator n=1 Tax=Bdellov... 48 1e-04 UniRef50_B4D2X8 Two component transcriptional regulator, LuxR fa... 48 2e-04 UniRef50_D2SB03 Two component transcriptional regulator, LuxR fa... 48 2e-04 UniRef50_A2SCN0 Two-component response regulator n=1 Tax=Methyli... 48 2e-04 UniRef50_B3E9L1 Two component transcriptional regulator, LuxR fa... 48 3e-04 UniRef50_C4KBL1 Two component transcriptional regulator, LuxR fa... 47 3e-04 UniRef50_A1VT42 Two component transcriptional regulator, LuxR fa... 47 3e-04 UniRef50_Q13QW9 Two component transcriptional regulator, LuxR fa... 47 4e-04 UniRef50_D1W148 Transcriptional regulator, LuxR family n=3 Tax=P... 47 4e-04 UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR fa... 47 5e-04 UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=... 47 6e-04 UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 T... 47 6e-04 UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR fa... 46 7e-04 UniRef50_B5JQZ3 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 46 7e-04 UniRef50_C1M8K4 LuxR transcriptional regulator n=2 Tax=Citrobact... 46 7e-04 UniRef50_D0IY57 Two component transcriptional regulator, LuxR n=... 46 7e-04 UniRef50_B2JSN3 Two component transcriptional regulator, LuxR fa... 46 7e-04 UniRef50_D0LYS4 Two component transcriptional regulator, LuxR fa... 46 0.001 UniRef50_C4SVX3 Response regulator containing a CheY-like receiv... 46 0.001 UniRef50_B6A2W0 Two component transcriptional regulator, LuxR fa... 46 0.001 UniRef50_UPI0001746AEC response regulator with a HTH DNA-binding... 46 0.001 UniRef50_Q391P2 Two component transcriptional regulator, LuxR fa... 45 0.001 UniRef50_B2UJT4 Two component transcriptional regulator, LuxR fa... 45 0.001 UniRef50_A7HA46 Two component transcriptional regulator, LuxR fa... 45 0.001 UniRef50_C6C0G1 Two component transcriptional regulator, LuxR fa... 45 0.001 UniRef50_B6IQR3 Transcriptional regulatory protein FixJ n=1 Tax=... 45 0.001 UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR fa... 45 0.001 UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP ... 45 0.002 UniRef50_Q11XC0 Fimbrial Z protein; probable signal transducer n... 45 0.002 UniRef50_C6MDL5 Two component transcriptional regulator, LuxR fa... 45 0.002 UniRef50_Q04971 Vi polysaccharide biosynthesis protein tviA n=9 ... 45 0.002 UniRef50_A6LIL1 Transcriptional regulator n=6 Tax=Bacteroidales ... 45 0.002 UniRef50_Q89IF1 Two-component response regulator n=2 Tax=Bradyrh... 45 0.002 UniRef50_Q47FR0 Two component transcriptional regulator, LuxR fa... 45 0.002 UniRef50_Q2YB36 Two component transcriptional regulator, LuxR fa... 45 0.002 UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium ... 45 0.002 UniRef50_D2M0Z3 Two component transcriptional regulator, LuxR fa... 45 0.002 UniRef50_A3NID3 Transcriptional regulator, LuxR family n=58 Tax=... 45 0.002 UniRef50_B1ZWL0 Two component transcriptional regulator, LuxR fa... 45 0.002 UniRef50_C7PCU2 Two component transcriptional regulator, LuxR fa... 45 0.002 UniRef50_Q3JL34 DNA-binding response regulator n=30 Tax=pseudoma... 44 0.002 UniRef50_C7RMN3 Two component transcriptional regulator, LuxR fa... 44 0.003 UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR fa... 44 0.003 UniRef50_B1ZU68 Two component transcriptional regulator, LuxR fa... 44 0.003 UniRef50_B9XQH4 Two component transcriptional regulator, LuxR fa... 44 0.003 UniRef50_C4DIP4 Response regulator containing a CheY-like receiv... 44 0.003 UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistip... 44 0.003 UniRef50_Q30UW3 Transcriptional regulator, LuxR family n=1 Tax=D... 44 0.003 UniRef50_A9EQD2 Putative two-component system response regulator... 44 0.003 UniRef50_UPI00017463AF response regulator receiver domain protei... 44 0.003 UniRef50_B2JIJ8 Two component transcriptional regulator, LuxR fa... 44 0.003 UniRef50_B5D212 Putative uncharacterized protein n=1 Tax=Bactero... 44 0.003 UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltapr... 44 0.003 UniRef50_P0AEL9 Fimbriae Z protein n=80 Tax=Enterobacteriaceae R... 44 0.003 UniRef50_B1K3F3 Two component transcriptional regulator, LuxR fa... 44 0.004 UniRef50_Q12FM5 Two component transcriptional regulator, LuxR fa... 44 0.004 UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC... 44 0.004 UniRef50_Q0SZI3 Putative uncharacterized protein n=2 Tax=Shigell... 44 0.004 UniRef50_C6WJ94 Transcriptional regulator, LuxR family n=1 Tax=A... 44 0.004 UniRef50_C1SMK1 Response regulator containing a CheY-like receiv... 44 0.004 UniRef50_Q842F8 Response regulator, two-component system n=8 Tax... 44 0.004 UniRef50_Q46SR4 Two component transcriptional regulator, LuxR fa... 44 0.004 UniRef50_C4XSZ8 NarL family two-component response regulator n=2... 44 0.004 UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepI... 44 0.004 UniRef50_A9IRH9 Probable two-component response regulator n=5 Ta... 44 0.004 UniRef50_B9XL75 Two component transcriptional regulator, LuxR fa... 43 0.004 UniRef50_Q7NTU2 Probable transcriptional regulatory, LuxR family... 43 0.004 UniRef50_A0Z1U8 Response regulator containing a CheY-like receiv... 43 0.004 UniRef50_Q72LA2 Probable two-component response regulator n=1 Ta... 43 0.004 UniRef50_B3RBW3 Response regulator in two-component regulatory s... 43 0.004 UniRef50_A6AS40 Two component response regulator n=5 Tax=Vibrio ... 43 0.004 UniRef50_Q1GZT3 Two component transcriptional regulator, LuxR fa... 43 0.004 UniRef50_D0FMI8 Bacterial regulatory protein, LuxR n=3 Tax=Erwin... 43 0.005 UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR fa... 43 0.005 UniRef50_C4UMU0 Putative uncharacterized protein n=1 Tax=Yersini... 43 0.005 UniRef50_C1TL94 Response regulator containing a CheY-like receiv... 43 0.005 UniRef50_UPI00017452CB response regulator with a HTH DNA-binding... 43 0.005 UniRef50_Q2T8I1 DNA-binding response regulator, LuxR family n=28... 43 0.005 UniRef50_B6BTE7 Two component transcriptional regulator, LuxR fa... 43 0.005 UniRef50_B1T1G9 Two component transcriptional regulator, LuxR fa... 43 0.005 UniRef50_C9LCY4 Transcriptional regulator, LuxR family domain pr... 43 0.006 UniRef50_A0M543 Two-component system response regulator n=3 Tax=... 43 0.006 UniRef50_B9Z8S5 Two component transcriptional regulator, LuxR fa... 43 0.006 UniRef50_B2KE01 Two component transcriptional regulator, LuxR fa... 43 0.006 UniRef50_A6GLU5 Two-component response regulator n=1 Tax=Limnoba... 43 0.006 UniRef50_C8PZQ8 PAS domain containing response regulator, LuxR f... 43 0.006 UniRef50_C8WS10 Two component transcriptional regulator, LuxR fa... 43 0.006 UniRef50_C1A5H1 Putative NarL family two-component response regu... 43 0.006 UniRef50_Q9RLW5 Virulence protein A n=1 Tax=Klebsiella pneumonia... 43 0.006 UniRef50_C9PZ73 Transcriptional regulator n=6 Tax=Prevotella Rep... 43 0.006 UniRef50_A1ZW83 DNA-binding response regulator, LuxR family, put... 43 0.006 UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator rece... 43 0.007 UniRef50_C6W645 Two component transcriptional regulator, LuxR fa... 43 0.007 UniRef50_C6QBW6 Two component transcriptional regulator, LuxR fa... 43 0.007 UniRef50_Q7NWW0 Probable two-component response regulator, LuxR ... 43 0.007 UniRef50_P39404 Transcriptional activator protein bglJ n=99 Tax=... 43 0.007 UniRef50_B1M5J4 Two component transcriptional regulator, LuxR fa... 43 0.007 UniRef50_A1AKZ0 Two component transcriptional regulator, LuxR fa... 43 0.007 UniRef50_C7LQH4 Two component transcriptional regulator, LuxR fa... 43 0.007 UniRef50_P44845 Nitrate/nitrite response regulator protein homol... 43 0.007 UniRef50_Q5E1C3 Two component response regulator n=17 Tax=Gammap... 43 0.008 UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=... 43 0.008 UniRef50_B5D3J6 Putative uncharacterized protein n=1 Tax=Bactero... 43 0.008 UniRef50_A3HUJ9 Transcriptional regulator, LuxR family protein n... 43 0.008 UniRef50_B1K3E7 Two component transcriptional regulator, LuxR fa... 43 0.008 UniRef50_C7MN84 Response regulator containing a CheY-like receiv... 43 0.008 UniRef50_C5V4D3 Transcriptional regulator, LuxR family n=1 Tax=G... 43 0.008 UniRef50_A1TUY1 Two component transcriptional regulator, LuxR fa... 43 0.008 UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR fa... 43 0.008 UniRef50_B1M303 Transcriptional regulator, LuxR family n=2 Tax=M... 43 0.009 UniRef50_A2P4I0 Transcriptional regulator, LuxR family protein n... 43 0.009 UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR fa... 43 0.009 UniRef50_B6R3D7 Transcriptional regulatory protein FixJ n=1 Tax=... 43 0.009 UniRef50_B2JQA9 Two component transcriptional regulator, LuxR fa... 43 0.009 UniRef50_Q01NC6 Two component transcriptional regulator, LuxR fa... 42 0.009 UniRef50_Q47I89 Two component transcriptional regulator, LuxR fa... 42 0.010 UniRef50_A6KY33 Transcriptional regulator n=20 Tax=Bacteroidales... 42 0.010 UniRef50_B5JGA7 Transcriptional regulator, LuxR family protein n... 42 0.010 UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Baci... 42 0.010 UniRef50_P0AGA8 Transcriptional regulatory protein uhpA n=167 Ta... 42 0.010 UniRef50_B8ET67 Two component transcriptional regulator, LuxR fa... 42 0.010 UniRef50_C3KMY2 Putative uncharacterized protein n=1 Tax=Rhizobi... 42 0.010 UniRef50_A3Z7P9 Two-component response regulator, CheY-like rece... 42 0.010 UniRef50_UPI0001744DFC response regulator with a HTH DNA-binding... 42 0.010 UniRef50_D1CEU2 Transcriptional regulator, LuxR family n=1 Tax=T... 42 0.010 UniRef50_D1BFC2 Response regulator containing a CheY-like receiv... 42 0.010 UniRef50_C1DIN7 Response regulator, LuxR family n=16 Tax=Gammapr... 42 0.011 UniRef50_Q5P6A6 Two-component response regulator n=4 Tax=Rhodocy... 42 0.011 UniRef50_A6GFX0 Two component transcriptional regulator, LuxR fa... 42 0.011 UniRef50_C9M9U6 Response regulator GacA n=1 Tax=Jonquetella anth... 42 0.011 UniRef50_UPI00017458E5 two component transcriptional regulator, ... 42 0.011 UniRef50_B7GM72 DNA-binding response regulator, NarL family (REC... 42 0.011 UniRef50_A9BWP2 Two component transcriptional regulator, LuxR fa... 42 0.011 UniRef50_D2TRD6 LuxR-family transcriptional regulator n=1 Tax=Ci... 42 0.011 UniRef50_B3RA82 Response regulator protein; Response regulator r... 42 0.011 UniRef50_UPI00016C4750 two-component transcriptional regulator, ... 42 0.012 UniRef50_Q2W0G1 Response regulator containing a CheY-like receiv... 42 0.012 UniRef50_P37740 C4-dicarboxylate transport transcriptional regul... 42 0.012 UniRef50_Q7MEM2 Response regulator VieA n=31 Tax=Vibrio RepID=Q7... 42 0.012 UniRef50_Q1LLE4 Two component transcriptional regulator, LuxR fa... 42 0.012 UniRef50_C6VVK2 Two component transcriptional regulator, LuxR fa... 42 0.012 UniRef50_C0N7Q7 Sigma-70, region 4 family n=1 Tax=Methylophaga t... 42 0.012 UniRef50_A6Q7X9 Two-component response regulator n=1 Tax=Sulfuro... 42 0.012 UniRef50_B9QZV4 Sigma-70, region 4 family n=3 Tax=Rhodobacterace... 42 0.012 UniRef50_A3PKG7 Two component transcriptional regulator, LuxR fa... 42 0.012 UniRef50_A8AF51 Putative uncharacterized protein n=1 Tax=Citroba... 42 0.012 UniRef50_C4SZW9 DNA-binding HTH domain-containing protein n=2 Ta... 42 0.013 UniRef50_C4XNR8 NarL family two-component response regulator n=1... 42 0.013 UniRef50_A6L4A3 Transcriptional regulator n=32 Tax=Bacteroidales... 42 0.013 UniRef50_B4CVL8 Two component transcriptional regulator, LuxR fa... 42 0.013 UniRef50_B1K7T2 Two component transcriptional regulator, LuxR fa... 42 0.013 UniRef50_A6FG26 Regulatory protein CsgD n=1 Tax=Moritella sp. PE... 42 0.013 UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=... 42 0.013 UniRef50_B8EMC5 Two component transcriptional regulator, LuxR fa... 42 0.013 UniRef50_Q0FK57 Putative two-component response regulator n=1 Ta... 42 0.013 UniRef50_B0SY65 Two component transcriptional regulator, LuxR fa... 42 0.014 UniRef50_Q7NCA4 LuxR family transcriptional regulatory protein n... 42 0.014 UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsoni... 42 0.014 UniRef50_D0IVR3 Two component transcriptional regulator, LuxR n=... 42 0.014 UniRef50_Q11YW8 Two component transcriptional regulator, LuxR fa... 42 0.014 UniRef50_Q5NZX4 Two-component response regulator n=3 Tax=Betapro... 42 0.014 UniRef50_A2WHU0 Response regulator n=2 Tax=Burkholderia cepacia ... 42 0.014 UniRef50_A4J308 Response regulator receiver protein n=1 Tax=Desu... 42 0.014 UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92... 42 0.015 UniRef50_A8GBA0 Two component transcriptional regulator, LuxR fa... 42 0.015 UniRef50_B6WQV4 Putative uncharacterized protein n=1 Tax=Desulfo... 42 0.015 UniRef50_C7I0E4 Two component transcriptional regulator, LuxR fa... 42 0.015 UniRef50_A4CN07 Response regulator containing a CheY-like receiv... 42 0.015 UniRef50_Q2W8X3 Response regulator n=2 Tax=Magnetospirillum RepI... 42 0.015 UniRef50_B6JD38 Two component transcriptional regulator, LuxR fa... 42 0.015 UniRef50_B8E485 Two component transcriptional regulator, LuxR fa... 42 0.015 UniRef50_A6C9W9 Two component transcriptional regulator, LuxR fa... 42 0.015 UniRef50_Q47DK2 Two component transcriptional regulator, LuxR fa... 42 0.016 UniRef50_C7REC7 Two component transcriptional regulator, LuxR fa... 42 0.016 UniRef50_Q1H354 Two component transcriptional regulator, LuxR fa... 42 0.016 UniRef50_C7LQC4 Transcriptional regulator, LuxR family n=1 Tax=D... 42 0.016 UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Sele... 42 0.016 UniRef50_B2JLH9 Two component transcriptional regulator, LuxR fa... 42 0.017 UniRef50_Q7UXT1 Response regulator n=1 Tax=Rhodopirellula baltic... 42 0.017 UniRef50_B5JNS6 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 42 0.018 UniRef50_P31802 Nitrate/nitrite response regulator protein narP ... 42 0.018 UniRef50_B6J0B9 Response regulator n=18 Tax=Coxiella burnetii Re... 42 0.018 UniRef50_B6B3N4 DNA-binding response regulator, LuxR family n=2 ... 42 0.019 UniRef50_B8FQ55 Transcriptional regulator, LuxR family n=2 Tax=D... 42 0.019 UniRef50_A8UHM3 Two-component response regulator n=1 Tax=Flavoba... 42 0.019 UniRef50_C6VU12 Transcriptional regulator, LuxR family n=1 Tax=D... 42 0.019 UniRef50_D2Q6G2 Two-component response regulator, LuxR family n=... 42 0.020 UniRef50_C4UJG9 Response regulator containing a CheY-like receiv... 42 0.020 UniRef50_Q5ZS73 Response regulator GacA n=10 Tax=Gammaproteobact... 41 0.020 UniRef50_UPI0001B57527 transcriptional regulator, LuxR family pr... 41 0.021 UniRef50_A3XI64 DNA-binding response regulator, LuxR family prot... 41 0.021 UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=... 41 0.021 UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 ... 41 0.021 UniRef50_UPI000197BDC0 two component LuxR family transcriptional... 41 0.021 UniRef50_B4EXV5 Response regulator n=4 Tax=Gammaproteobacteria R... 41 0.022 UniRef50_A9BU04 Two component transcriptional regulator, LuxR fa... 41 0.022 UniRef50_C0N6H7 Response regulator receiver domain protein n=1 T... 41 0.022 UniRef50_B3E9K5 Two component transcriptional regulator, LuxR fa... 41 0.022 UniRef50_C5S952 Two component transcriptional regulator, LuxR fa... 41 0.022 UniRef50_C1ZLY1 Response regulator containing a CheY-like receiv... 41 0.022 UniRef50_Q4ZT82 Regulatory protein, LuxR n=4 Tax=Pseudomonas syr... 41 0.023 UniRef50_Q2RYV0 DNA-binding response regulator, LuxR family n=3 ... 41 0.023 UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 T... 41 0.023 UniRef50_C4XMF2 NarL family two-component response regulator n=1... 41 0.024 UniRef50_Q1IP51 Two component transcriptional regulator, LuxR fa... 41 0.024 UniRef50_Q15U24 Two component transcriptional regulator, LuxR fa... 41 0.024 UniRef50_C6VTJ6 Two component transcriptional regulator, LuxR fa... 41 0.024 UniRef50_D0FXM2 LuxR family transcriptional regulator n=3 Tax=Er... 41 0.024 UniRef50_D0L5W2 Response regulator receiver n=36 Tax=Actinomycet... 41 0.024 UniRef50_C6C961 Two component transcriptional regulator, LuxR fa... 41 0.025 UniRef50_A1ZEE6 Two-component response regulator n=2 Tax=Microsc... 41 0.025 UniRef50_C4ZM15 Two component transcriptional regulator, LuxR fa... 41 0.026 UniRef50_Q1IJ83 Two component transcriptional regulator, LuxR fa... 41 0.026 UniRef50_C4ZNR1 Two component transcriptional regulator, LuxR fa... 41 0.026 UniRef50_A1JQC4 Response regulator protein n=8 Tax=Yersinia RepI... 41 0.027 UniRef50_B7AC48 Transcriptional regulator, LuxR family n=2 Tax=T... 41 0.027 UniRef50_A0NNP3 Response regulator containing a CheY-like receiv... 41 0.027 UniRef50_B8GAC9 Two component transcriptional regulator, LuxR fa... 41 0.027 UniRef50_B8G137 Two component transcriptional regulator, LuxR fa... 41 0.028 UniRef50_A8ZUE5 Transcriptional regulator, LuxR family n=1 Tax=D... 41 0.028 UniRef50_A4CPM8 Regulatory protein, LuxR:Response regulator rece... 41 0.028 UniRef50_B5PK74 Transcriptional regulator, LuxR family protein n... 41 0.028 UniRef50_B5JP13 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 41 0.028 UniRef50_B8CN77 Nitrate/nitrite DNA-binding response regulator, ... 41 0.028 UniRef50_B2A6W2 Two component transcriptional regulator, LuxR fa... 41 0.029 UniRef50_A0PS39 Conserved hypothetical regulatory protein n=3 Ta... 41 0.029 UniRef50_C3R1G9 Transcriptional regulator n=3 Tax=Bacteroidales ... 41 0.029 UniRef50_A0NVX8 Two component transcriptional regulator, LuxR fa... 41 0.029 UniRef50_C3QQ50 Transcriptional regulator n=2 Tax=Bacteroides Re... 41 0.029 UniRef50_Q48GV3 DNA-binding response regulator, LuxR family n=14... 41 0.030 UniRef50_C4XGR4 Putative NarL family two-component response regu... 41 0.030 UniRef50_Q0EZ33 Regulatory protein, LuxR:Response regulator rece... 41 0.030 UniRef50_C7RKP7 Two component transcriptional regulator, LuxR fa... 41 0.030 UniRef50_A9AIC6 Two component transcriptional regulator, LuxR fa... 41 0.030 UniRef50_B4CYJ9 Two component transcriptional regulator, LuxR fa... 41 0.031 >UniRef50_Q46941 Uncharacterized protein yqeH n=35 Tax=Enterobacteriaceae RepID=YQEH_ECOLI Length = 210 Score = 298 bits (763), Expect = 8e-80, Method: Composition-based stats. Identities = 210/210 (100%), Positives = 210/210 (100%) Query: 1 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNH 60 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNH Sbjct: 1 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNH 60 Query: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISA 120 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISA Sbjct: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISA 120 Query: 121 VIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI 180 VIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI Sbjct: 121 VIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI 180 Query: 181 RSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 RSIYAYKQRIEKRMGGKINELFIRSHSVQH Sbjct: 181 RSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 >UniRef50_C3SWA2 Putative uncharacterized protein n=11 Tax=Enterobacteriaceae RepID=C3SWA2_ECOLX Length = 230 Score = 293 bits (751), Expect = 2e-78, Method: Composition-based stats. Identities = 207/210 (98%), Positives = 208/210 (99%) Query: 1 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNH 60 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMW EESSYFNRGVVEGILTKNH Sbjct: 21 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWSEESSYFNRGVVEGILTKNH 80 Query: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISA 120 NARLSGYIFVDFSVSFLRLFLEKDWIDYLAS+DMGIVLVSDRNMQSLANYWRKHNSAISA Sbjct: 81 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASSDMGIVLVSDRNMQSLANYWRKHNSAISA 140 Query: 121 VIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI 180 VIYNDDGLDVANEKIRQLFIGRYLSFT GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI Sbjct: 141 VIYNDDGLDVANEKIRQLFIGRYLSFTRGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI 200 Query: 181 RSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 RSIYAYKQRIEKRMGGKINELFIRSHSVQH Sbjct: 201 RSIYAYKQRIEKRMGGKINELFIRSHSVQH 230 >UniRef50_B0BF91 Putative uncharacterized protein n=9 Tax=Enterobacteriaceae RepID=B0BF91_ECOLX Length = 209 Score = 253 bits (645), Expect = 4e-66, Method: Composition-based stats. Identities = 93/202 (46%), Positives = 135/202 (66%) Query: 7 YKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSG 66 Y + C SC C++ P S R+ +C + CFC WPE S YF+ G++EG+L +N+N G Sbjct: 8 YGRINCMSCPSQCELKPNASLRVSFCQDYCFCTWPEGSGYFSLGIMEGLLKQNYNNLYLG 67 Query: 67 YIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDD 126 IFVDFS+S LR F + WIDYL T + IV+V D+ ++ LANYW KH+ I VIY D Sbjct: 68 CIFVDFSISHLRFFTNERWIDYLIETKLKIVIVCDKYLKPLANYWFKHSKDIFLVIYQQD 127 Query: 127 GLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAY 186 L +A EK+++ FI + +F GG +L+++EF ++ ++SG Q+A+ L++DIR+IYA Sbjct: 128 RLTLACEKLKKRFIYQRDAFFGGESLSELEFAVLSALISGDGCLQLADELNVDIRTIYAA 187 Query: 187 KQRIEKRMGGKINELFIRSHSV 208 K+R EK+MG IN LF SHS+ Sbjct: 188 KRRAEKKMGADINTLFRFSHSL 209 >UniRef50_C8Q4Z8 Transcriptional regulator, LuxR family n=1 Tax=Pantoea sp. At-9b RepID=C8Q4Z8_9ENTR Length = 206 Score = 236 bits (603), Expect = 3e-61, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 99/191 (51%) Query: 8 KSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGY 67 +L+C C + C+I +E +++C + +WPE + Y + E I N Sbjct: 7 GALSCMGCRLGCRIGGDEDFNVEFCTDKKLVLWPEGNDYLKLALHELIFKGNGCELSEDT 66 Query: 68 IFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDG 127 + +D S+ L LF+ +W+ +L++ MG+VL+ DR M ++A+YW + +++I VI D G Sbjct: 67 LIIDCSLRNLGLFINDEWLTFLSAQGMGMVLIPDRRMIAIAHYWWRKSTSIKGVISTDAG 126 Query: 128 LDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYK 187 + +++ G + T+ E ++ + +G +IA +L ++S+Y +K Sbjct: 127 MGNFMRDLKKRLCGGSDRQSKTPVATEREMHVLAMIYAGRTVQEIATLLGCSVKSVYIHK 186 Query: 188 QRIEKRMGGKI 198 I+K+MG I Sbjct: 187 SAIKKKMGNDI 197 >UniRef50_B4SXG3 RmbA n=36 Tax=Enterobacteriaceae RepID=B4SXG3_SALNS Length = 205 Score = 234 bits (598), Expect = 1e-60, Method: Composition-based stats. Identities = 75/193 (38%), Positives = 118/193 (61%) Query: 10 LTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYIF 69 + C SC + CQ+ P+ + R+QYC N+ F +WP+ +++ +G +E +L HN SG+IF Sbjct: 9 VHCISCDLSCQLFPDSAVRVQYCHNAAFSIWPDGNAFLKKGFIEKLLLDRHNHLSSGFIF 68 Query: 70 VDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLD 129 VDFS LR F + W D LA + M IVL+SDR++ LANYW ++ I +IY+DD Sbjct: 69 VDFSFPNLRRFTDLQWADSLADSGMHIVLISDRSLTPLANYWILKSNKIQGIIYSDDDDI 128 Query: 130 VANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQR 189 V +K+ +LF GR + G TL EF ++ VSG + QI + ++DI+ +Y +K R Sbjct: 129 VQQQKMHRLFTGRLANSKRGRTLNYTEFILLKRFVSGISIQQIVNIDNIDIKKLYVHKLR 188 Query: 190 IEKRMGGKINELF 202 +E ++G I ++ Sbjct: 189 LENKLGHSIQKII 201 >UniRef50_D2TJM7 Putative regulatory protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJM7_CITRO Length = 211 Score = 221 bits (562), Expect = 2e-56, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 91/195 (46%), Gaps = 2/195 (1%) Query: 12 CNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYIFVD 71 C C + C + C +WP ++ F + + + A + +D Sbjct: 11 CADCQLRCPHAINTLLKTTSCGTIKVAIWPGDNPLFTDSLFYILSENDKPALHEDLLLID 70 Query: 72 FSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVA 131 F + + F++ DW++ T IVLV DR MQ+LA+YW K + A++ + DG Sbjct: 71 FCLDNIAFFIDDDWLEGWKKTGARIVLVVDRFMQALAHYWHKKHPALTLLPVTGDGGSQF 130 Query: 132 NEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 + + G+ + G +T E +++ ++G + ++A VL+ ++++Y+ + + Sbjct: 131 LRDLENVLNGQSIMPDGVTAITNNEISVLRKRITGLSAQRVAAVLNCSLKTVYSCQYSLC 190 Query: 192 KRMG--GKINELFIR 204 +++G ++ +L I Sbjct: 191 RKLGAPARLEKLIIE 205 >UniRef50_C8Q4X9 Response regulator receiver protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q4X9_9ENTR Length = 201 Score = 207 bits (526), Expect = 2e-52, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 97/176 (55%) Query: 23 PEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLE 82 P + +Q ++ + +WP+ + Y G+ + K HN +IFVDFS ++ F + Sbjct: 19 PAQLSDMQDHSDVEYAIWPDRNYYLRLGIHATLREKQHNHLKFSFIFVDFSHYNIKFFSD 78 Query: 83 KDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGR 142 DWI LA + G++L+SD M +LA++W KH+ I+ VIY+ D N+KI+ + IGR Sbjct: 79 ADWIKNLARSGSGLILLSDYRMDNLASWWWKHHQRIATVIYSSDCQQTINKKIKDVLIGR 138 Query: 143 YLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKI 198 + + +LT E ++ +V Y +IA+ L +D + +Y + ++K + ++ Sbjct: 139 WGNGVKAGSLTTSEVEVLNLLVREYTLTEIADSLQLDKKKLYNIRFSLQKNLTVRL 194 >UniRef50_Q9AME2 Probable HTH-type transcriptional regulator matA n=56 Tax=Bacteria RepID=MATA_ECOLX Length = 196 Score = 152 bits (384), Expect = 7e-36, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 84/173 (48%), Gaps = 13/173 (7%) Query: 39 MWPEESSYFNRGVVEGILTKNHNARLS------GYIFVDFSVSFLRLFLEKD--WIDYLA 90 +W +YF +G+ E I+ + LS ++F++ + L F+ +D W+ A Sbjct: 27 IWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLNTDSLTEFINRDNEWLS--A 84 Query: 91 STDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLS-FTGG 149 +VL++ R ++LANYW +NS I V+Y D+ E + + GR+L Sbjct: 85 VKGKQVVLIAARKSEALANYWY-YNSNIRGVVYAGLSRDIRKE-LAYVINGRFLRKDIKK 142 Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELF 202 + +T E I+ G P IA + + ++++Y +++ E ++ K+ +L Sbjct: 143 DKITDREMEIIRMTAQGMLPKSIARIENCSVKTVYTHRRNAEAKLYSKLYKLV 195 >UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q485W6_COLP3 Length = 215 Score = 55.8 bits (133), Expect = 9e-07, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 46/86 (53%), Gaps = 3/86 (3%) Query: 126 DGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYA 185 +G + I +L I ++ LT E ++ Y+ G +IA++L++ R++ A Sbjct: 127 NGKTHFSSSIAKLLIDNPVNTNESEKLTTREQVVLSYLAKGKTSKEIAKILNISFRTVEA 186 Query: 186 YKQRIEKRMG-GKINELFIRSHSVQH 210 +++ ++ ++G + +L S++V+H Sbjct: 187 HRRNMKTKLGIHSLAKLI--SYAVKH 210 >UniRef50_C1ZGK9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGK9_PLALI Length = 217 Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 17/151 (11%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIY 123 L + +D S+ L F + + + +V+ ++ ++ SL W + A Sbjct: 48 LPDVVVLDLSIPHLNGFELLEQLQHQKRPPKVLVVTANEDLDSLQRSWNLGAAGHLAKRS 107 Query: 124 NDDGLDVANEKI---RQLF--------------IGRYLSFTGGNTLTQMEFTIMGYMVSG 166 D L VA KI ++F TG +L++ E ++ + +G Sbjct: 108 AADELIVAIRKIAAGEKVFPSKEESKAVKTLGFNETSGRLTGAESLSERETEVLKLIAAG 167 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 + +IA LD+ ++++ YK R +++ + Sbjct: 168 HMAKEIAAKLDISLKTVETYKSRGMQKLSLR 198 >UniRef50_B1KE04 Two component transcriptional regulator, LuxR family n=2 Tax=Alteromonadales RepID=B1KE04_SHEWM Length = 206 Score = 53.1 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Query: 126 DGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYA 185 +G + I L + LT E T++ + SG N ++A LD+ +R+I Sbjct: 119 NGGIYYSRAISDLLVQSSQEPDKNTVLTTREQTVLRLLASGLNNKELARELDISVRTIET 178 Query: 186 YKQRIEKRMGGKINELFIRSHSVQH 210 +++ I+ ++ K + +R +++ H Sbjct: 179 HRRNIKDKLAIKTSAGLVR-YAIDH 202 >UniRef50_A4TJY3 Two-component response regulator n=27 Tax=Yersinia RepID=A4TJY3_YERPP Length = 210 Score = 52.0 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 15/157 (9%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWRKHNSAI 118 + +D + F + T + L + R +Q+ AN + N I Sbjct: 50 DLVIIDIELPNFDGFSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGFISKNKDI 109 Query: 119 SAVIYNDD----GLDVANEKIRQLFIGRYLSFT---GGNTLTQMEFTIMGYMVSGYNPYQ 171 S +++ G + G+ S L++ E ++ Y+V+G + Q Sbjct: 110 SEILFAAQNVLRGYSFFPSETLTQLAGQPSSHDPVNRARLLSEREINVLRYLVNGLSNKQ 169 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMG-GKINELFIRSHS 207 IA+ + + +++ YK RI ++G + EL +H+ Sbjct: 170 IADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHT 206 >UniRef50_C1D8M5 Probable transcriptional regulatory, LuxR family n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8M5_LARHH Length = 211 Score = 52.0 bits (123), Expect = 1e-05, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 11/154 (7%) Query: 53 EGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL---------VSDRN 103 E +L +H +G + +D +S + + + + L I L VS Sbjct: 42 ESLLAASHCVSTAGCLVLDVRLSGISGLILFERLRALGDCPPAIFLTGHADVPLAVSALK 101 Query: 104 MQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYM 163 M + A+++ K + + L N++ + + + LT+ E +M + Sbjct: 102 MGA-ADFFEKPFDDARLIARVAECLAADNQQRQARQHWQRI-DAALQQLTEREHEVMQLI 159 Query: 164 VSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 V+G QIAE LD+ I+++ ++ R+ +MG K Sbjct: 160 VAGRLNKQIAEELDISIKTVEVHRSRVLDKMGVK 193 >UniRef50_Q2RYV1 Two-component response regulator n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYV1_SALRD Length = 229 Score = 50.4 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 11/122 (9%) Query: 98 LVSDRNMQSLANYWRKHNSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG---- 149 L ++R +++ A+ + + A+ +G + + + R + +G Sbjct: 96 LYAERAVEAGASGYVMKTKPTEEVMRAIELVSEGQVFLSRHVSSRILSRLVRGSGDTETS 155 Query: 150 --NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHS 207 LT E T+ + G++ QIA+ LD++ ++I Y++R ++++G + E +R H+ Sbjct: 156 PLEKLTDRELTVFRKIGEGHSVRQIADQLDLNRKTIETYRRRAKEKLGHETVEDLLR-HA 214 Query: 208 VQ 209 VQ Sbjct: 215 VQ 216 >UniRef50_A6CG81 DNA-binding response regulator, LuxR family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CG81_9PLAN Length = 222 Score = 48.9 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 2/113 (1%) Query: 86 IDYLASTDMGIVLVSDRNMQSLA-NYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYL 144 I + + G V ++ R M++ A ++ K S + Y G++ + + + L Sbjct: 89 IPVIIVSGYGDVPMAVRAMKAGAIDFLEKPVSDQVLLDYIQKGIETDIKNKQNRIQNQDL 148 Query: 145 SFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 LT+ E +M Y+V+G++ +IA L++ +++ A++ +I K+M K Sbjct: 149 ME-RKELLTRREREVMEYVVAGFSSREIAGTLNVSFKTVEAHRAKIMKKMQAK 200 >UniRef50_Q6ML78 Two-component response regulator n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6ML78_BDEBA Length = 204 Score = 48.5 bits (114), Expect = 1e-04, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 12/141 (8%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYND 125 + +D + F D+I ++ +V L YW NS + A++ Sbjct: 52 SVVLLDHLLRGSSGFEVLDFIRKFNASIRVMVFTQSLESAILKTYW---NSPVVAIVSKG 108 Query: 126 DGLDVANEKIRQLFIGRY---------LSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVL 176 L+ + + L G + G LT+ E + + +G + +IAEVL Sbjct: 109 SLLEDVPKALLALKRGERFLSANIREAIDKAGVEVLTKREIEVARMIATGRSNKEIAEVL 168 Query: 177 DMDIRSIYAYKQRIEKRMGGK 197 ++I +K I ++G Sbjct: 169 GCSDQTIKTHKTNIMTKLGVN 189 >UniRef50_B4D2X8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2X8_9BACT Length = 242 Score = 48.1 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 40/86 (46%), Gaps = 6/86 (6%) Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFT------GGNTLTQMEFTIMGYMVSGYNPYQ 171 ++ + +G + K I + + T + L+ EF ++ + G+ + Sbjct: 133 LTGLRKVGEGEIYVSPKFSDRLIFKTIQSTIAGVASPVDKLSDREFEVLRLLGRGFGSRE 192 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGK 197 IAE L + ++++ ++ I++++G K Sbjct: 193 IAEELSLSVKTVETHRAHIKEKLGFK 218 >UniRef50_D2SB03 Two component transcriptional regulator, LuxR family n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SB03_9ACTO Length = 248 Score = 47.7 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 13/125 (10%) Query: 85 WIDYLASTDMGIVLV---SDR----NMQSLANYWRKHNSA----ISAVIYNDDGLDVANE 133 W+ + + +VL SDR M++ A + I V G V N Sbjct: 105 WLHAIRPSAKIVVLTATTSDRVLVAAMEAGAAGFIAKTQRLDDVIEGVRAAAQGESVVNV 164 Query: 134 KIRQLFIGRYLSFTGGN--TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 K+ + R +GG LT+ E I+ + G + IA+ L + + ++ + + Sbjct: 165 KLLTRLLPRLHRQSGGGGAVLTEREREILDLLARGLSNADIAQQLTISVHTVRNHVANLS 224 Query: 192 KRMGG 196 ++G Sbjct: 225 AKLGA 229 >UniRef50_A2SCN0 Two-component response regulator n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SCN0_METPP Length = 210 Score = 47.7 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 29/51 (56%) Query: 145 SFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 + + L+ EF +M +V G P +IA+ L + +++++ +I+ ++G Sbjct: 142 QDSAAHGLSPREFEVMRLLVGGRTPQEIAQSLSLSVKTVHNVHYQIKSKLG 192 >UniRef50_B3E9L1 Two component transcriptional regulator, LuxR family n=1 Tax=Geobacter lovleyi SZ RepID=B3E9L1_GEOLS Length = 223 Score = 47.7 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 28/55 (50%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 L++ E I + GY +IA L + I+++ YK R+ +MG K N IR Sbjct: 161 TRLSRREMEIFRLLARGYMLKRIANDLGLSIKTVSTYKVRLSAKMGFKDNAALIR 215 >UniRef50_C4KBL1 Two component transcriptional regulator, LuxR family n=8 Tax=Betaproteobacteria RepID=C4KBL1_THASP Length = 212 Score = 47.3 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 133 EKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEK 192 + R + + LTQ E ++ ++ G QIA+VL + I+++ ++ R+ + Sbjct: 129 RETRDRRLQEADTARRLGLLTQREREVLELIIVGKLNKQIADVLGISIKTVEVHRARVME 188 Query: 193 RMGG 196 +MG Sbjct: 189 KMGA 192 >UniRef50_A1VT42 Two component transcriptional regulator, LuxR family n=7 Tax=cellular organisms RepID=A1VT42_POLNA Length = 224 Score = 47.3 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 10/118 (8%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 L + +++ + ++ D Q L N AI AV G + +++ Sbjct: 88 LSMHNNLEYVKRAIESGAKGYVLKDAPAQELVN-------AIRAV---HAGETFFSPELQ 137 Query: 137 QLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 Q G S G + LT E + ++ GY+ QIA L M +R++ ++ + +++ Sbjct: 138 QYTEGFRASSGGNSPLTPKESATLAWLACGYSNKQIARELSMSVRTVETHRLNLRRKL 195 >UniRef50_Q13QW9 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderia RepID=Q13QW9_BURXL Length = 220 Score = 47.0 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%) Query: 149 GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 G L+ EF ++ +V GY IAE L + +++ ++ I ++ G Sbjct: 149 GRQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGAD 197 >UniRef50_D1W148 Transcriptional regulator, LuxR family n=3 Tax=Prevotella RepID=D1W148_9BACT Length = 221 Score = 47.0 bits (110), Expect = 4e-04, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 54/135 (40%), Gaps = 15/135 (11%) Query: 67 YIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDD 126 ++ V + FL++ ++ S+ M L + +S V ++ Sbjct: 78 FVSVSIVLENRGFFLDR-------RRKTIVLTTSNDPMTQLTGF----HSICVNVPEDEL 126 Query: 127 GLDVANEKIRQLFIGRYLSFT----GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRS 182 V + G++L L+ E ++ +V GY +IA+ L++ + + Sbjct: 127 VRSVLMLEQHAHGTGQHLPPLPKVLKKKVLSDREIEVLSLIVQGYINKEIADRLNIGMTT 186 Query: 183 IYAYKQRIEKRMGGK 197 + +++ I +++G K Sbjct: 187 VITHRKNIMEKLGVK 201 >UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=Q2RMH6_MOOTA Length = 221 Score = 46.6 bits (109), Expect = 5e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 30/63 (47%) Query: 133 EKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEK 192 E +++ S G LT+ E ++ G +IA L + ++++ A++ I + Sbjct: 137 EGLQERLPFTRASRPEGPELTERELEVLRLAAEGLTNAEIARRLVISVKTVQAHRANIMQ 196 Query: 193 RMG 195 ++G Sbjct: 197 KLG 199 >UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=Thermomicrobia (class) RepID=B9L2G4_THERP Length = 246 Score = 46.6 bits (109), Expect = 6e-04, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 51/126 (40%), Gaps = 15/126 (11%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 L ++ +++++ + LV + + L + A+ +G + + Sbjct: 107 LTMYDDEEYVLHAIRAGARSYLVKNSKPEEL----------LRAIHVAAEGGATIDPDLA 156 Query: 137 QLFIGRYLS-----FTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 + + Y T G L+ E T++ + GYN QIA+ L++ ++ + Sbjct: 157 PILMREYQRLLTKAPTRGQDLSDRELTMLRLLAQGYNNRQIADALNLAESTVKNNLSALF 216 Query: 192 KRMGGK 197 +++G + Sbjct: 217 QKLGVR 222 >UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 Tax=Vibrio RepID=C9QDP7_VIBOR Length = 209 Score = 46.6 bits (109), Expect = 6e-04, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 30/49 (61%) Query: 148 GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 +TL++ E ++ + +G +IA+ L + +R++ ++ RI+K++G Sbjct: 144 KDDTLSKRESDVLKAIANGAGNKEIADSLHISVRTVETHRLRIKKKLGA 192 >UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q01NJ8_SOLUE Length = 224 Score = 46.2 bits (108), Expect = 7e-04, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 49/127 (38%), Gaps = 18/127 (14%) Query: 76 FLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKI 135 FL ++ ++D++ ++ D L I+A+ G + ++ Sbjct: 82 FLSMYDDEDYLAECVDMGANGYILKDSPADQL----------ITAIREVQRGGSYLSPRL 131 Query: 136 RQLFI--------GRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYK 187 + G TLT+ E I+ + G + +IA ++ ++++ A+K Sbjct: 132 LSRLVDDFRLQGRGGGTRSPRFGTLTKREREILKMLAEGKSVKEIAAFFELSVKTVEAHK 191 Query: 188 QRIEKRM 194 + +++ Sbjct: 192 FNLMRKL 198 >UniRef50_B5JQZ3 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQZ3_9BACT Length = 222 Score = 46.2 bits (108), Expect = 7e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 30/56 (53%) Query: 142 RYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 N L+ E ++ + G++ QIAE+L++ +++I A++ + K++ + Sbjct: 137 GSAVAKKKNRLSNREREVLQAVAEGFSTKQIAEMLEVSVKTIEAHRANLMKKLDAR 192 >UniRef50_C1M8K4 LuxR transcriptional regulator n=2 Tax=Citrobacter RepID=C1M8K4_9ENTR Length = 178 Score = 46.2 bits (108), Expect = 7e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 6/77 (7%) Query: 134 KIRQLFIGRYL--SFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 ++ +L +G++ + LT+ E I+ +VSGY +I+E++ ++ ++I A+K R+ Sbjct: 93 QLAKLSVGKWNPRLYRSQKRLTEREQQILNLLVSGYTAKEISELVSLNYKTIQAHKMRVV 152 Query: 192 KRMG----GKINELFIR 204 ++G +N+L +R Sbjct: 153 AKLGLTNTSDLNKLIVR 169 >UniRef50_D0IY57 Two component transcriptional regulator, LuxR n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0IY57_COMTE Length = 201 Score = 46.2 bits (108), Expect = 7e-04, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 16/153 (10%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIY 123 L + VD+ + + +I YL G+ ++ + + + + + V++ Sbjct: 35 LPDIVIVDYHMPDSQYGDGIKFIGYLLRQFEGLKVIVLTMLSNPMIVKALYKAGVKGVVF 94 Query: 124 NDDGLDVANEKIRQLFIGRYLSF----------------TGGNTLTQMEFTIMGYMVSGY 167 D + IR + +G + +LT EF ++ Y V G Sbjct: 95 KQDDPSEVFKAIRLVSLGNIYTPPSFLETNVSLQHQMLQERFKSLTPREFEVLRYYVRGG 154 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINE 200 + +IAE L+ I+++ + K +++ K N+ Sbjct: 155 SLAEIAERLNRSIKTVSSQKMTAMRKLEAKSNQ 187 >UniRef50_B2JSN3 Two component transcriptional regulator, LuxR family n=28 Tax=Proteobacteria RepID=B2JSN3_BURP8 Length = 210 Score = 46.2 bits (108), Expect = 7e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 L+ EF ++ + +G + +IA++ + ++I +K R+ +++G N IR ++++ Sbjct: 146 EVLSDREFQVLQMLAAGKSINEIADICALSAKTISTHKMRLMQKLGLANNAEVIR-YAIR 204 Query: 210 H 210 H Sbjct: 205 H 205 >UniRef50_D0LYS4 Two component transcriptional regulator, LuxR family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYS4_HALO1 Length = 212 Score = 45.8 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Query: 102 RNMQSLANYWRKHNSAI----SAVIYNDDGLDVANEKIRQLFIGRYLSFTG----GNTLT 153 R +++ AN + + + A+ +G +KI F R++ TL+ Sbjct: 92 RTLRAGANGFISKGARLEELLKAITDVHEGQRYLPDKIATSFAERHIRPDAEKPLVETLS 151 Query: 154 QMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 + EF +M ++ G +IA VL + ++++ ++ + K++ + N R ++QH Sbjct: 152 KREFQVMTHLAQGMTNREIAGVLQISVKTVDTHRSHVLKKLELRNNSDITR-FAIQH 207 >UniRef50_C4SVX3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=3 Tax=Yersinia RepID=C4SVX3_YERFR Length = 218 Score = 45.8 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 50/113 (44%), Gaps = 2/113 (1%) Query: 84 DWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLF-IGR 142 DW+ + +++++D L + + AVI + L ++ ++F Sbjct: 77 DWLR-IQRPHCRVIVIADEFCVYLLKQYFYGVEQVYAVIAQNAPLSQFVAQLNRVFSNSP 135 Query: 143 YLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 LS L++ E T++ ++ G + IA+ L + +++ +K+ ++G Sbjct: 136 ELSKKRPCILSKRERTVLALLLQGKSNNDIADHLQLSNKTVSYHKRSALGKLG 188 >UniRef50_B6A2W0 Two component transcriptional regulator, LuxR family n=47 Tax=Proteobacteria RepID=B6A2W0_RHILW Length = 223 Score = 45.8 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLD 177 ++A+ DG + + +G + G + LT E I+G +V+G + +IAEVL Sbjct: 117 VAAIETVADGGTYFSSGVFDALMGER-AEEGSDPLTPREHDILGLIVAGRSNREIAEVLG 175 Query: 178 MDIRSIYAYKQRIEKRMG 195 + + +++ ++K++G Sbjct: 176 ISSATAETHRKNLKKKLG 193 >UniRef50_UPI0001746AEC response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746AEC Length = 222 Score = 45.8 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 21/112 (18%) Query: 119 SAVIYNDDGLDVANEKIRQLFIGRYLSFTG--------------------GNTLTQMEFT 158 + D +R + G+ + L+ EF Sbjct: 107 RGYVMKDADGPTFLTAVRTVLAGQRYMSSRLAASVLESFGQSKPRGSSSPIEKLSDREFE 166 Query: 159 IMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 + G +IA L++ +++ ++ I++++G + IR +V+H Sbjct: 167 VFRLFGEGKTAKEIAAQLNLSPKTVSVHRDHIKEKLGFSTSAEMIR-QAVRH 217 >UniRef50_Q391P2 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia sp. 383 RepID=Q391P2_BURS3 Length = 216 Score = 45.4 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Query: 116 SAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG-NTLTQMEFTIMGYMVSGYNPYQIAE 174 S + V Y + + + G+ T L+ E I+ + G QIAE Sbjct: 118 SVLRGVPYFP---PEVQQNLLRRARGQAAKPTTPLAALSPREIEILRMIGEGLTKQQIAE 174 Query: 175 VLDMDIRSIYAYKQRIEKRMGGKIN-ELFIRS 205 + ++ A++ I++++G N EL S Sbjct: 175 RIGHSANTVEAHRTNIKRKLGLDNNAELIRFS 206 >UniRef50_B2UJT4 Two component transcriptional regulator, LuxR family n=6 Tax=Ralstonia RepID=B2UJT4_RALPJ Length = 211 Score = 45.4 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 4/80 (5%) Query: 133 EKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEK 192 E + + + L+ EF + + SG +IAE L + +++ Y+ R+ Sbjct: 132 EVLADNLNVDWDKP-RHDILSDREFQTLRMLGSGRTLSEIAEALQISAKTVSVYRGRVLS 190 Query: 193 RMGGKIN---ELFIRSHSVQ 209 +M + N +++ S+ +Q Sbjct: 191 KMKLRNNAELTMYVVSNGLQ 210 >UniRef50_A7HA46 Two component transcriptional regulator, LuxR family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HA46_ANADF Length = 212 Score = 45.4 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 8/53 (15%), Positives = 25/53 (47%) Query: 145 SFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 +LTQ E ++ + G + ++A L + +++ ++ + +++G Sbjct: 143 RGGRVTSLTQREREVLRLLAQGDSNREVAGQLSISAKTVETHRANVMRKLGAS 195 >UniRef50_C6C0G1 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C0G1_DESAD Length = 218 Score = 45.0 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 32/56 (57%) Query: 142 RYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 R S +LT+ E ++ +++GY +IA++L + ++++ ++ K++G + Sbjct: 144 RSNSCDSLESLTEREREVLKQVLAGYKNREIADLLVISVKTVEKHRSNFMKKLGLR 199 >UniRef50_B6IQR3 Transcriptional regulatory protein FixJ n=1 Tax=Rhodospirillum centenum SW RepID=B6IQR3_RHOCS Length = 209 Score = 45.0 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 29/55 (52%) Query: 142 RYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 R + L++ E ++G ++ G I +VL + I+++ A++ RI ++ G Sbjct: 136 RRAAAEKLAALSEREVEVLGQVIEGRTNRAIGDVLGISIKTVEAHRARIMEKTGA 190 >UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1Z3_LEPCP Length = 235 Score = 45.0 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 26/43 (60%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 L+ E ++ +V+G IAE L + ++++ +K RI++++ Sbjct: 160 LSDRELEVLRRIVAGERITDIAEALHLSVKTVSTHKSRIQEKL 202 >UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP n=13 Tax=Gammaproteobacteria RepID=C5B7B5_EDWI9 Length = 215 Score = 45.0 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 17/146 (11%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMG----IVLVSDRNMQSLA-------NYWRKH 114 I +D ++ L D + L S + I+ VSD A +Y K Sbjct: 58 DLILLDLNMKGL---SGLDTLKALRSEGIDARIIILTVSDARSDVYALVDAGADSYLLKD 114 Query: 115 NSA---ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQ 171 + ++ + +G V +E + R LT+ E ++ +V G + Q Sbjct: 115 SEPEALLAQIRQAAEGRSVFSESVSAYLSTRSEIADPLADLTERELDVLQEVVRGMSNKQ 174 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGK 197 IA L + ++ + + + +++ + Sbjct: 175 IAAQLHISEETVKVHIRNLLRKLNVR 200 >UniRef50_Q11XC0 Fimbrial Z protein; probable signal transducer n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11XC0_CYTH3 Length = 212 Score = 45.0 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 31/60 (51%) Query: 138 LFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 L G + T + + E ++ Y+ G + QIA++L + ++I +++ I K+ G K Sbjct: 135 LLKGFLANQTSDSIFSDRELEVLRYICKGRSNEQIADILFISEKTIATHRRNIMKKAGVK 194 >UniRef50_C6MDL5 Two component transcriptional regulator, LuxR family n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MDL5_9PROT Length = 218 Score = 45.0 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 38/80 (47%), Gaps = 2/80 (2%) Query: 115 NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAE 174 + + +Y + + ++++ G NTLT EF ++ + G++ +IA+ Sbjct: 121 HEVLKGNVY--LSKQMHEKLLKRIASGHSEPEQLINTLTPSEFEVLHLIGQGHSSQEIAK 178 Query: 175 VLDMDIRSIYAYKQRIEKRM 194 +L I++I ++ I ++ Sbjct: 179 LLCRSIKTIETHRFNIRVKL 198 >UniRef50_Q04971 Vi polysaccharide biosynthesis protein tviA n=9 Tax=Enterobacteriaceae RepID=TVIA_SALTI Length = 179 Score = 45.0 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 5/161 (3%) Query: 40 WPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV 99 WP YF G I + Y+FV+ + L L + ++ + IV++ Sbjct: 7 WPPNDIYFGVGAAGIIEEVSLITNDRNYLFVNLNRYSLLNALN--FFTRMSDINKIIVII 64 Query: 100 SDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN---TLTQME 156 S + LA +W + AV + + Q G + + + + + Sbjct: 65 SSSRLMPLARFWLTECKNVIAVFDAATSVQDIIRNVSQHQSGEKILTEQRDYRFRINRKD 124 Query: 157 FTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 M Y +S ++ + ++Y +++ + + G + Sbjct: 125 IVKMKYFLSESGMEELQDRFMNSSSTMYRWRKELAVKFGVR 165 >UniRef50_A6LIL1 Transcriptional regulator n=6 Tax=Bacteroidales RepID=A6LIL1_PARD8 Length = 193 Score = 45.0 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Query: 127 GLDVANEKIRQLFIGRYLSFTGGNT---LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSI 183 + E+++QLF T L+ E ++ +V G +IA+ L++ + ++ Sbjct: 98 SQETIIEQLQQLFTSDSSGNTTTENNKDLSSREVDVLQLIVKGITNKEIADKLNISLNTV 157 Query: 184 YAYKQRIEKRMGGK 197 +++ I ++G K Sbjct: 158 LTHRKNITAKLGIK 171 >UniRef50_Q89IF1 Two-component response regulator n=2 Tax=Bradyrhizobium RepID=Q89IF1_BRAJA Length = 217 Score = 45.0 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 127 GLDVANEKIRQLFIGRYLSFTGG--NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIY 184 G ++ I + LS TG + L + E I+ G QIA L++ ++++ Sbjct: 128 GERAMSDDIAHILADDSLSPTGSVLDQLGEREIEILRQFAGGATTEQIATHLNLSVKTVQ 187 Query: 185 AYKQRIEKRMGGKINELFIR 204 Y I+ + G + + +R Sbjct: 188 NYHYLIKTKTGARTDAQLVR 207 >UniRef50_Q47FR0 Two component transcriptional regulator, LuxR family n=9 Tax=Betaproteobacteria RepID=Q47FR0_DECAR Length = 218 Score = 45.0 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 133 EKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEK 192 EK+ + + LT E I ++ G +I L++ ++++ +K I Sbjct: 131 EKLTLQILHGRDTDAPHTGLTDREHQIFLMILQGLGVTEIGRQLNLSVKTVSTHKASILA 190 Query: 193 RMGGKINELFIRSHSVQH 210 +M + + +R +++QH Sbjct: 191 KMNLRNSAELVR-YAIQH 207 >UniRef50_Q2YB36 Two component transcriptional regulator, LuxR family n=3 Tax=Betaproteobacteria RepID=Q2YB36_NITMU Length = 217 Score = 45.0 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 2/83 (2%) Query: 115 NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAE 174 + + IY + + + ++ G N+LT EF ++ + SG++ +IA+ Sbjct: 121 HEVLKGNIY--LSKPMHAKLLNRVAGGNSEPEPLINSLTPSEFEVLHLIGSGHSSQEIAK 178 Query: 175 VLDMDIRSIYAYKQRIEKRMGGK 197 +L I++I ++ I ++ K Sbjct: 179 LLSRSIKTIETHRFNIRTKLNLK 201 >UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1R6_THERP Length = 221 Score = 44.6 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 146 FTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG-GKINELFIR 204 L++ E ++ +GY +IA+ L + +++ Y+ R+ +++G + +EL Sbjct: 150 QDPAQLLSEREREVLRLTAAGYTAQEIADQLFLSPKTVETYRHRVMQKLGFSRRSELVRF 209 Query: 205 S 205 + Sbjct: 210 A 210 >UniRef50_D2M0Z3 Two component transcriptional regulator, LuxR family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M0Z3_BACS4 Length = 204 Score = 44.6 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 12/92 (13%) Query: 115 NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEF------------TIMGY 162 N I + Y L ++ G G+ E + Sbjct: 95 NKDIQGLFYEQSPLGDLMSFFEKVLNGEQAFLNNGSPRNYREIDEEFHELSKREEEVFYM 154 Query: 163 MVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 + GY A++L++ +++ +++ I K++ Sbjct: 155 KLRGYTVKDTAQILNISPKTVENHRRNIRKKL 186 >UniRef50_A3NID3 Transcriptional regulator, LuxR family n=58 Tax=Bacteria RepID=A3NID3_BURP6 Length = 266 Score = 44.6 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Query: 112 RKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQ 171 + + + D A++ + + R L+ G LT+ E I ++ G + Sbjct: 167 IRQHRRLQG----DASRARASDDLAERVE-RALASFGAPLLTEREMAIARLVLRGNSSKA 221 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMG 195 IAE L + ++ +++ + ++G Sbjct: 222 IAERLAISPETVKVHRRHLYSKLG 245 >UniRef50_B1ZWL0 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=B1ZWL0_OPITP Length = 234 Score = 44.6 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 58/122 (47%), Gaps = 11/122 (9%) Query: 98 LVSDRNMQSLANYWRKHN-------SAISAVIYNDDGLDVANEK--IRQLFIGRYLSF-T 147 L ++R +++ A + + +AI V+ + L ++ + +L R Sbjct: 106 LFAERALRAGAKGYIMKHEASAKILTAIRRVLSGELYLSDKMKEKMLHRLVNNRKEEVVF 165 Query: 148 GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHS 207 +TL+ E + + +GY QIA L++ +++I +Y++ ++ ++ + +R H+ Sbjct: 166 SIDTLSDREMEVFQLIGNGYGTRQIASKLNLSVKTIDSYREHLKLKLRLESGTELVR-HA 224 Query: 208 VQ 209 +Q Sbjct: 225 IQ 226 >UniRef50_C7PCU2 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PCU2_CHIPD Length = 220 Score = 44.6 bits (104), Expect = 0.002, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 27/44 (61%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 L++ EF +M + G + +IA+ L++ I+++ ++ I K++ Sbjct: 153 KLSKTEFRVMQMIAEGMSTKEIAQSLNISIKTVENHRHNISKKL 196 >UniRef50_Q3JL34 DNA-binding response regulator n=30 Tax=pseudomallei group RepID=Q3JL34_BURP1 Length = 223 Score = 44.3 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 31/57 (54%) Query: 141 GRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 G + + LT+ E ++ + G +IA +L++ +++ ++QR+ +++G + Sbjct: 145 GGRTLASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGAR 201 >UniRef50_C7RMN3 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RMN3_9PROT Length = 213 Score = 44.3 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 27/52 (51%) Query: 144 LSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 + + L+ E ++ + SG + QIAE L + +++ Y+ RI ++ G Sbjct: 144 GRKSASDALSDREIEVLRRLASGESLTQIAEALHLSPKTVTTYRARIVEKTG 195 >UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAQ5_9BACT Length = 229 Score = 44.3 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 141 GRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINE 200 G + + LT EF + + G + +IA + + +++ ++ I+ ++G K Sbjct: 152 GTQAASSPIENLTDREFEVFRLIGEGLSTKEIAANMHVSAKTVEVHRMNIKTKLGLKTAA 211 Query: 201 LFIR 204 IR Sbjct: 212 ELIR 215 >UniRef50_B1ZU68 Two component transcriptional regulator, LuxR family n=2 Tax=Opitutus terrae PB90-1 RepID=B1ZU68_OPITP Length = 238 Score = 44.3 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 25/49 (51%) Query: 149 GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 G LT E ++ Y+ G +IA+ L + R++ ++ I KR G + Sbjct: 152 GPALTNREREVLRYVAEGLGSKEIADRLALSTRTVENHRANILKRTGLR 200 >UniRef50_B9XQH4 Two component transcriptional regulator, LuxR family n=2 Tax=Verrucomicrobia RepID=B9XQH4_9BACT Length = 223 Score = 44.3 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 17/151 (11%) Query: 61 NARLSGYIFVDFSVSF------LRLFLEK-DWIDYLASTDMGIVLVSDRNMQSLA-NYWR 112 N + VD S+ ++ + D + L + L ++R +++ A Y Sbjct: 51 NTLKPNLVLVDISLGNASGIDLIKNIKNQHDDLPVLVVSMHDESLYAERALRAGAMGYVM 110 Query: 113 KHNSA--ISAVIYNDDGLDVANEK------IRQLFIGRYLSFTGG-NTLTQMEFTIMGYM 163 KH A + IY G D+ + + + G+ L+ E + + Sbjct: 111 KHEPAKTVRGAIYKVLGGDIYLSERMASSMLVKFMKGKTDEPLSPLEILSDRELEVFRML 170 Query: 164 VSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 G QIAE +++ I +I +++ RI+ ++ Sbjct: 171 GQGKGTRQIAEEMNLTIATINSFRARIKDKL 201 >UniRef50_C4DIP4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DIP4_9ACTO Length = 142 Score = 44.3 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 12/116 (10%) Query: 93 DMGIVLVSDRNMQSLANYW--RKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG- 149 VLV LA + + + +S + E +RQ+ G + + Sbjct: 13 GQHRVLVLHERDMPLAPFAEAFRSSPKVS-FMGTCASAAQFLESVRQIACGHLVMDSDVA 71 Query: 150 --------NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 + LT E ++ G P +IA L + + ++ Y ++G + Sbjct: 72 LGLLRANHSPLTAREREVLSITHGGATPKEIASKLQLSVGTVRNYLANACAKLGAR 127 >UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVU6_9BACT Length = 216 Score = 44.3 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 55/139 (39%), Gaps = 16/139 (11%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 L +F ++++ + L+ D M + + A+ G E++ Sbjct: 83 LSMFGDENYYSRMVQAGAKGFLMKDSPMDEV----------LRAIETVAAGGTYFCEEVL 132 Query: 137 QLFIGRYLSFTGG-----NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 + R + G L+ E I+ + G + +IA+ L + R++ ++ I Sbjct: 133 RSLASRMQTAVSGYEGSDERLSTREIEILVCVCRGLSNQEIADELFISKRTVDKHRANIL 192 Query: 192 KRMGGKINELFIRSHSVQH 210 ++ G K N + ++V+H Sbjct: 193 EKTGCK-NTASLVVYAVRH 210 >UniRef50_Q30UW3 Transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30UW3_DESDG Length = 403 Score = 44.3 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 29/55 (52%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSH 206 L+ E + + G N +IA +L+M ++ +++ I +++G K + + S+ Sbjct: 341 LSPREMEVCQLIQLGRNGQEIAALLNMSFETVQTHRKNIRRKLGLKGRTVSLFSY 395 >UniRef50_A9EQD2 Putative two-component system response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EQD2_SORC5 Length = 212 Score = 44.3 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 34/75 (45%), Gaps = 7/75 (9%) Query: 142 RYLSFTGGN---TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG--- 195 R + G+ L+ E ++ + G + ++A L + ++++ ++ R+ ++ Sbjct: 137 RRDAAARGDMVAALSDRERQVLRLLAMGLSAKEVAAQLSISVKTVETHRARLCAKVATHS 196 Query: 196 -GKINELFIRSHSVQ 209 + L +R+ V+ Sbjct: 197 VADLTRLAVRAGLVE 211 >UniRef50_UPI00017463AF response regulator receiver domain protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017463AF Length = 251 Score = 44.3 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 135 IRQLFIGRYLSFTGGNT--LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEK 192 ++ L G L+ E + + G + IA+ L + +++ ++QR++ Sbjct: 136 LQDLSCGALGRPRDAEVSRLSDRELQVFRMIGRGMSSTSIAQELGVSSKTVETHRQRMKD 195 Query: 193 RM 194 ++ Sbjct: 196 KL 197 >UniRef50_B2JIJ8 Two component transcriptional regulator, LuxR family n=7 Tax=Burkholderia RepID=B2JIJ8_BURP8 Length = 235 Score = 44.3 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG-GKINELFIRSHS 207 L++ E ++ VSG +I+E L+ I++I K +++G + +ELF + S Sbjct: 155 LSKRELEVVRLFVSGMTIKEISEQLNRSIKTISTQKNTAMRKLGLERDSELFQYAQS 211 >UniRef50_B5D212 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5D212_9BACE Length = 215 Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 127 GLDVANEKIRQLFIGRYLSFTGGN-TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYA 185 G ++ I + F G LT E ++ + +GY +IA L++D ++ Sbjct: 128 GNTISYNDIIKAFGGEENVKKRKPYELTDRELEVIQLLANGYTSKEIANELNIDRNTVET 187 Query: 186 YKQRIEKRM 194 YK RI+ ++ Sbjct: 188 YKDRIKSKL 196 >UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltaproteobacteria RepID=Q2LSF1_SYNAS Length = 217 Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG-GKINELFIRS 205 LT E ++ + G + QIA L + ++++ +++ I +++G G + EL + Sbjct: 153 LTPRERELLQLLAEGLSAKQIAANLHVSVKTVETHRRNITQKLGVGSVAELIKYA 207 >UniRef50_P0AEL9 Fimbriae Z protein n=80 Tax=Enterobacteriaceae RepID=FIMZ_ECO57 Length = 210 Score = 43.9 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 143 YLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG-GKINEL 201 + + L+ E TI+ Y+VSG + +IA+ L + +++ A+K I ++G I EL Sbjct: 141 STNSSTVTVLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVEL 200 Query: 202 F 202 Sbjct: 201 I 201 >UniRef50_B1K3F3 Two component transcriptional regulator, LuxR family n=2 Tax=Burkholderia cenocepacia MC0-3 RepID=B1K3F3_BURCC Length = 213 Score = 43.9 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 4/82 (4%) Query: 116 SAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEV 175 +A+ IY L K+ + LT E ++ + SG +P ++ ++ Sbjct: 120 TALRGAIYISARLQRELTKLGLT----EMESQRAANLTPRELEVLRLLASGKSPTEVGQM 175 Query: 176 LDMDIRSIYAYKQRIEKRMGGK 197 L I+++ K ++++G K Sbjct: 176 LHRTIKTVSWAKTSAKRKLGLK 197 >UniRef50_Q12FM5 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderiales RepID=Q12FM5_POLSJ Length = 224 Score = 43.9 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLD 177 ++ IY + ++L + + + L++ EF I+ + G+ Q+A+ L+ Sbjct: 131 LAGDIYLSAAMHSRLS--QRLLAPQAGAPSPIAGLSEREFEILHLLGLGFGTRQVADKLN 188 Query: 178 MDIRSIYAYKQRIEKRM 194 I++I ++ +++++ Sbjct: 189 RSIKTIETHRASLKEKL 205 >UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC-HTH domains) n=7 Tax=Bacteria RepID=B3DW63_METI4 Length = 243 Score = 43.9 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 27/48 (56%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 L+ EF + + GY QIAE L + ++++ AY+ I++++ K Sbjct: 167 EALSDREFEVFQLIGKGYGSRQIAEQLSLSVKTVEAYRASIKQKLYLK 214 >UniRef50_Q0SZI3 Putative uncharacterized protein n=2 Tax=Shigella flexneri RepID=Q0SZI3_SHIF8 Length = 242 Score = 43.9 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 27/49 (55%) Query: 149 GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 + L+ + M + G + +I+ +++ I+++YA+K R ++G K Sbjct: 178 TDILSPQQIETMKMVAQGRSVNEISAAMNISIKTVYAHKVRAINKLGIK 226 >UniRef50_C6WJ94 Transcriptional regulator, LuxR family n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WJ94_ACTMD Length = 788 Score = 43.9 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 11/124 (8%) Query: 83 KDWIDYLAST-DMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLD-VANEKIRQLFI 140 + W+D LA D V + R + + +W A A I D V +L Sbjct: 649 ESWLDVLAGKVDPDQVERAARGLHAAGQWWDAARLAGQAAIRTSDRQAMVRLLDCARLLQ 708 Query: 141 GRYLSFTG---------GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 GR L L+ E + +V G Q+ + L + +++ + RI Sbjct: 709 GRPLGGRKPVEPETGQETGKLSDREREVAELVVGGLTYKQVGDRLFISAKTVEHHVARIR 768 Query: 192 KRMG 195 +R+G Sbjct: 769 QRLG 772 >UniRef50_C1SMK1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMK1_9BACT Length = 219 Score = 43.9 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 29/49 (59%) Query: 149 GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 LT EF + + +G+ QIA L++ +++I A+++ ++ ++G K Sbjct: 151 VEALTDREFQVFQMIGNGFTTKQIATKLNLSVKTIDAFRESMKHKLGLK 199 >UniRef50_Q842F8 Response regulator, two-component system n=8 Tax=Rhodococcus RepID=Q842F8_RHOSR Length = 209 Score = 43.9 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 27/45 (60%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 ++L+ E +M + SG +IAE L + R++ +++ I++++ Sbjct: 146 DSLSSRELEVMKLIASGLTNTEIAEELTVSPRTVESHRASIQRKL 190 >UniRef50_Q46SR4 Two component transcriptional regulator, LuxR family n=14 Tax=Burkholderiales RepID=Q46SR4_RALEJ Length = 232 Score = 43.9 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 3/99 (3%) Query: 102 RNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFT---GGNTLTQMEFT 158 R Q+ AN + + ++ + + + + GR +L+ E Sbjct: 117 RARQAGANGYVSKTQELPEIVRCVESVLAGYSVMPDVDGGRADGVDETRRLGSLSDKELV 176 Query: 159 IMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 IM + G + QI EVL + +++ +K RI +++G + Sbjct: 177 IMQMLAKGMSNKQIGEVLFISNKTVSTHKTRIMEKLGAR 215 >UniRef50_C4XSZ8 NarL family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XSZ8_DESMR Length = 226 Score = 43.9 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG-GKINELFIRSHSV 208 ++LT+ E I+ + G + IA L + +++ ++ I ++G + EL + + Sbjct: 157 DSLTRREQQILRLLAEGRSVAAIATELFISKKTVENHRANICGKLGLANLAELVRYAARL 216 >UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepID=Q2W7M4_MAGSA Length = 209 Score = 43.9 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 29/51 (56%) Query: 144 LSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 S GG +LT E ++ + G+ +IA+ L + I+++ ++ +I +++ Sbjct: 140 GSDMGGGSLTAREREVLQLIARGHKNREIADELGIAIKTVETHRTKIMQKL 190 >UniRef50_A9IRH9 Probable two-component response regulator n=5 Tax=Bordetella RepID=A9IRH9_BORPD Length = 258 Score = 43.9 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 23/46 (50%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 LT E ++ + G + Q+A L ++I +K+R K++G Sbjct: 192 TRLTTAEIEVLRQIAQGLSVTQLAARLLRSKKTISTHKRRAMKKLG 237 >UniRef50_B9XL75 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XL75_9BACT Length = 234 Score = 43.5 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 50/125 (40%), Gaps = 17/125 (13%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 L + KD++ + + ++ D + L + A+ G + I Sbjct: 98 LSIHTNKDYVLQIIKSGAQGYVLKDAPLTEL----------VRAIESVHGGGAFFSPDIS 147 Query: 137 QLFIGRYLSFT-------GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQR 189 Q+ + +YL+ LT E ++ + G + ++A + + +R++ +++R Sbjct: 148 QIMLDQYLAEATNGEESGNSKKLTNRETEVLSMIAEGQSNKEMASRMGVGVRTVETHRER 207 Query: 190 IEKRM 194 + ++ Sbjct: 208 VMNKL 212 >UniRef50_Q7NTU2 Probable transcriptional regulatory, LuxR family n=1 Tax=Chromobacterium violaceum RepID=Q7NTU2_CHRVO Length = 206 Score = 43.5 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 29/46 (63%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 LT+ E +M +++G QIAE L + ++++ ++ R+ ++MG K Sbjct: 142 LTEREREVMQLILAGKLNKQIAEELSISMKTVEVHRSRVFEKMGVK 187 >UniRef50_A0Z1U8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z1U8_9GAMM Length = 219 Score = 43.5 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 30/54 (55%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRS 205 L+ E ++ + G++P +I L + ++I+A+K I +++G + IR+ Sbjct: 152 LSSRELDVLKRLALGFSPKEIGFELGLSDKTIHAHKNTIRQKLGLRRQSDIIRA 205 >UniRef50_Q72LA2 Probable two-component response regulator n=1 Tax=Thermus thermophilus HB27 RepID=Q72LA2_THET2 Length = 198 Score = 43.5 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 26/48 (54%) Query: 148 GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 G L++ E ++ + GY Q+AE L + +++ YKQR ++G Sbjct: 134 GPEVLSERERAVVALLAQGYTLSQVAERLGLSVKTASTYKQRALNKLG 181 >UniRef50_B3RBW3 Response regulator in two-component regulatory system, transcriptional regulator LuxR n=1 Tax=Cupriavidus taiwanensis RepID=B3RBW3_CUPTR Length = 218 Score = 43.5 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 137 QLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 + G LT E ++ +SG + +IA +++I KQ + +++G Sbjct: 143 RRLRGLSDHDDWAELLTTRESEVLRLYLSGLSVTEIAVRTGRTVKTISTQKQSVMRKIGA 202 Query: 197 K 197 Sbjct: 203 D 203 >UniRef50_A6AS40 Two component response regulator n=5 Tax=Vibrio harveyi group RepID=A6AS40_VIBHA Length = 198 Score = 43.5 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 7/92 (7%) Query: 119 SAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDM 178 + V+ DD + + + +L + L +LT+ E ++G +V G ++A++L + Sbjct: 112 ALVMAVDDAMAQSLKNGEKLGAKQVLQ-----SLTKREREVLGLVVKGMKNQEMADLLCV 166 Query: 179 DIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +R+I ++ + K++ L + H V H Sbjct: 167 SLRTIEVHRSNVMKKLEA--ESLAVLIHKVGH 196 >UniRef50_Q1GZT3 Two component transcriptional regulator, LuxR family n=10 Tax=Proteobacteria RepID=Q1GZT3_METFK Length = 215 Score = 43.5 bits (101), Expect = 0.004, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 135 IRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 + G +TL+ EF + + SG + +IAE L + ++++ Y+ R+ +++ Sbjct: 138 LADQVSGGLEKPIH-DTLSNREFQTLTMIASGLSVSEIAENLSLSVKTVSMYRARLLEKL 196 Query: 195 GGKIN 199 + N Sbjct: 197 NLRHN 201 >UniRef50_D0FMI8 Bacterial regulatory protein, LuxR n=3 Tax=Erwinia RepID=D0FMI8_ERWPY Length = 214 Score = 43.5 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 1/78 (1%) Query: 131 ANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRI 190 + + + S GN LT E ++ SGY +IA + I ++ K Sbjct: 133 FSSSLSNIKSYLSKSGEKGNGLTPKELEVIRLFSSGYTLSEIARRQNRTISTVSTQKYNA 192 Query: 191 EKRMGGKIN-ELFIRSHS 207 +R+G N EL +++ Sbjct: 193 MRRLGVSSNVELIRYAYA 210 >UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR family n=29 Tax=Alphaproteobacteria RepID=Q1GIA7_SILST Length = 233 Score = 43.5 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 31/51 (60%) Query: 145 SFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 S T LT E TI+ + G + ++A+ LD+ +R++ +++ I++++G Sbjct: 159 SQTSREALTGREQTILLELAQGKSNKEVAQALDISVRTVETHRKNIKRKLG 209 >UniRef50_C4UMU0 Putative uncharacterized protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UMU0_YERRU Length = 179 Score = 43.5 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 28/45 (62%) Query: 153 TQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 + E +I+ Y + G+ +IA LD++I+++Y +K+ I ++G Sbjct: 120 SDREESILNYWLEGWIDQRIANTLDINIKTVYTHKRNIRLKLGAS 164 >UniRef50_C1TL94 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL94_9BACT Length = 215 Score = 43.5 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 7/95 (7%) Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLS------FTGGNTLTQMEFTIMGYMVSGYNPYQ 171 I A+ G + KI + I YL + + L+ E ++ + G + + Sbjct: 112 IRAIHIVSSGETYLSPKIASILIKDYLKLLDTAVPSRASLLSDREREVLALLAKGSSTKE 171 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMG-GKINELFIRS 205 +A L + ++ +++RI +++ G I EL + Sbjct: 172 VASSLHISKNTVDTHRRRIMEKLDCGNIAELIRFA 206 >UniRef50_UPI00017452CB response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017452CB Length = 235 Score = 43.5 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 134 KIRQLFIGRYLSF--TGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 +I + F GR + G L+ EF + + G + QI + L++ ++++ ++ I Sbjct: 149 QIMEAFSGRGAARPVDGVQRLSDREFEVFQLISEGKSTQQIGDALNISVKTVEVHRAHIR 208 Query: 192 KRM 194 +++ Sbjct: 209 EKL 211 >UniRef50_Q2T8I1 DNA-binding response regulator, LuxR family n=28 Tax=Bacteria RepID=Q2T8I1_BURTA Length = 250 Score = 43.5 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 26/47 (55%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 + LT E ++ +V G QIA L + ++++ ++ I++++G Sbjct: 182 DALTAREKEVLRGVVDGKGSKQIASDLSISVKTVDVHRASIKEKLGA 228 >UniRef50_B6BTE7 Two component transcriptional regulator, LuxR family n=2 Tax=Betaproteobacteria RepID=B6BTE7_9PROT Length = 199 Score = 43.5 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 6/81 (7%) Query: 120 AVIYNDDGLDVANEKIRQLFIGR------YLSFTGGNTLTQMEFTIMGYMVSGYNPYQIA 173 + D D + + + G S+ N L + EF I + SG + IA Sbjct: 99 GFVTKSDISDNLFQAVEHILNGGNFFPETKASYNQLNQLNEREFEIFKMIASGKSIKNIA 158 Query: 174 EVLDMDIRSIYAYKQRIEKRM 194 +++ +++ Y+ I++++ Sbjct: 159 ADMNISQKTVANYQTSIKQKL 179 >UniRef50_B1T1G9 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T1G9_9BURK Length = 204 Score = 43.1 bits (100), Expect = 0.005, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 12/145 (8%) Query: 62 ARLSGYIFVDFSVSFL-------RLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKH 114 + VD + + R+ ++ + L + L + R + AN + Sbjct: 44 ELKPDLLIVDIDLDGMDGIDLIQRVRIKDATVKILVFSGYSAELFALRCHAAGANGYVNK 103 Query: 115 NSAISAVIYNDD----GLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 + ++ V+ + G I + G L++ E T++ Y+ G + Sbjct: 104 SEDVTHVLSAANAVLAGFHCFPLDINAMASG-SGPHAAFAMLSERELTVLRYLAKGLSNK 162 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMG 195 +I + L + ++I +K I ++G Sbjct: 163 EIGDSLSLSNKTISTHKANILAKLG 187 >UniRef50_C9LCY4 Transcriptional regulator, LuxR family domain protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LCY4_9BACT Length = 235 Score = 43.1 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 27/50 (54%) Query: 148 GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 + LT E ++ +VSG +IA L + + ++ ++++ + ++G + Sbjct: 166 RISPLTPRETEVLRLVVSGLLNKEIANRLGVSLTTVISHRKNLTAKLGFR 215 >UniRef50_A0M543 Two-component system response regulator n=3 Tax=Flavobacteria RepID=A0M543_GRAFK Length = 212 Score = 43.1 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 8/110 (7%) Query: 108 ANYWRKH--NSAISAVIYNDDGLDVA-NEKIRQLFIGRYLSF----TGGNTLTQMEFTIM 160 A Y KH N + IY + N I + T L+ E ++ Sbjct: 99 AGYISKHTDNETLEKAIYQVARGGIYLNRSITEKLNSGISRGKSLITKFKKLSTRETEVL 158 Query: 161 GYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK-INELFIRSHSVQ 209 + SG IAE LD++ +++ YK R+ K++ + +L +S +Q Sbjct: 159 NLLSSGKRNKDIAEALDINEKTVSTYKTRLLKKLKVDNVADLITQSRLLQ 208 >UniRef50_B9Z8S5 Two component transcriptional regulator, LuxR family n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z8S5_9NEIS Length = 208 Score = 43.1 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 28/46 (60%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 LT+ E +M +++G QIA+ L + ++++ ++ R+ +MG K Sbjct: 142 LTEREREVMQLILAGKLNKQIADELAISMKTVEVHRSRVFDKMGVK 187 >UniRef50_B2KE01 Two component transcriptional regulator, LuxR family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KE01_ELUMP Length = 225 Score = 43.1 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 4/78 (5%) Query: 123 YNDDGLDVANEKIRQLFIGRYLSFTGGNT----LTQMEFTIMGYMVSGYNPYQIAEVLDM 178 + +GL + + + +L G G LT+ E ++ + G + ++A L Sbjct: 124 FTSEGLMIPQQLMGKLLHGLRKMGDNGTPSQALLTRTEIKVISLLGKGLSNKELATELSC 183 Query: 179 DIRSIYAYKQRIEKRMGG 196 +++I + ++G Sbjct: 184 SVKTIKNHLNSAFHKLGV 201 >UniRef50_A6GLU5 Two-component response regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GLU5_9BURK Length = 218 Score = 43.1 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 126 DGLDVANEKIRQLFIGRYLSFTGG--NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSI 183 G + + +L L G + L+ EF ++ +V+G + QI E+L + ++I Sbjct: 124 AGRTFISADLSRLMALSRLRDNRGGLDELSSREFEVLCLLVAGQSAEQIGELLFLSAKTI 183 Query: 184 YAYKQRIEKRM 194 + +I+K++ Sbjct: 184 HNIHYQIKKKL 194 >UniRef50_C8PZQ8 PAS domain containing response regulator, LuxR family n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZQ8_9GAMM Length = 202 Score = 43.1 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 27/46 (58%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 LT E I Y+V+GY +I ++L + R+I +K + K++G + Sbjct: 124 LTAREAQIAQYVVNGYTCKEIGKLLGLSPRTIEVHKANLMKKLGAR 169 >UniRef50_C8WS10 Two component transcriptional regulator, LuxR family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WS10_ALIAD Length = 224 Score = 43.1 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 52/121 (42%), Gaps = 13/121 (10%) Query: 77 LRLFLEKDWIDYLASTD-MGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKI 135 L +F ++ ++ + GIV D + + +A A+ + G + + Sbjct: 84 LTMFDDRVHVEKMLDAGVSGIVFKHDDSSEIVA-----------AIQHGQPGHPYLSRRW 132 Query: 136 RQLFIGRYLSFTG-GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 Q +S + L+ E ++ + GY ++A+ L + ++++ ++Q I +R+ Sbjct: 133 GQRANAETVSPSRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVETHRQHIMRRI 192 Query: 195 G 195 G Sbjct: 193 G 193 >UniRef50_C1A5H1 Putative NarL family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A5H1_GEMAT Length = 231 Score = 43.1 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 17/126 (13%) Query: 77 LRLFLEKDWIDYLASTDMGIVL---VSDRNMQSLANYWRKHNSAISAV----IYNDDGLD 129 L + E + + L G L V+DR + AI V +Y Sbjct: 95 LTMHTEDEHLVALLEAGAGGYLLKSVADRELV----------DAIRTVAAGDVYVQPSAA 144 Query: 130 VANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQR 189 A + G LT E ++ + GY +I E L + +++ YKQR Sbjct: 145 RALARGLAKREGHADERARFEKLTDREQVVLKMVAEGYTAPEIGEHLTISPKTVDTYKQR 204 Query: 190 IEKRMG 195 I +++G Sbjct: 205 IGEKLG 210 >UniRef50_Q9RLW5 Virulence protein A n=1 Tax=Klebsiella pneumoniae RepID=Q9RLW5_KLEPN Length = 207 Score = 43.1 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 37/58 (63%), Gaps = 1/58 (1%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK-INELFIRSHS 207 +L++ E IM Y+VSG IA ++++ +++ YK+R+ ++ K + +LF+ S++ Sbjct: 146 SLSEQEIKIMRYIVSGAPNQNIAAEMNINPKTVSTYKRRLMGKLNCKTLKDLFVFSNN 203 >UniRef50_C9PZ73 Transcriptional regulator n=6 Tax=Prevotella RepID=C9PZ73_9BACT Length = 206 Score = 43.1 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 26/47 (55%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 L+ E ++ +V G +IA+ L++ + ++ +++ I ++G K Sbjct: 140 VLSDREIEVLSLIVQGLINKEIADRLNIGLTTVITHRKNIMDKLGMK 186 >UniRef50_A1ZW83 DNA-binding response regulator, LuxR family, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZW83_9SPHI Length = 222 Score = 43.1 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 23/53 (43%) Query: 145 SFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 +F T E ++ + Y +IA+ L + R++ +K + + G + Sbjct: 147 NFINEGEFTDREMEVLRLLCEQYTAQEIADKLFISRRTVEGHKDNLFAKTGAR 199 >UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator receiver n=32 Tax=Betaproteobacteria RepID=Q46VQ7_RALEJ Length = 231 Score = 43.1 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 27/46 (58%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 + LT+ E I+G + G +IA L + +R++ ++ +++++G Sbjct: 165 DALTRRERDILGCIGRGMANKEIATQLGVSVRTVETHRLNLKRKLG 210 >UniRef50_C6W645 Two component transcriptional regulator, LuxR family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W645_DYAFD Length = 209 Score = 43.1 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 67/145 (46%), Gaps = 18/145 (12%) Query: 66 GYIFVDFSVSFLRLFLEKDWI-DYLASTDMGIVLVSD------RNMQSLANYWRKHNS-- 116 + +D ++ WI D+ + T + +V ++D R++Q A+ + + +S Sbjct: 49 DLLLLDLNMPDTDSTELLQWIRDFYSETKILVVSMNDESVFGKRSLQQGAHGYLEKDSSP 108 Query: 117 -----AISAVIYND--DGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNP 169 A++ ++ ++AN I G+ + + LT EF + Y+ Y+ Sbjct: 109 EELARAVTTIMSGKRYASTNLANILINDTLTGKSANPF--DRLTAREFQVATYLAKDYSV 166 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRM 194 QI+E+L + S+ +K+RI K++ Sbjct: 167 TQISEILQVQYTSVNTFKRRIFKKL 191 >UniRef50_C6QBW6 Two component transcriptional regulator, LuxR family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QBW6_9RHIZ Length = 207 Score = 43.1 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 1/123 (0%) Query: 86 IDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLS 145 I + T G V ++ R M++ A + + ++ I R S Sbjct: 83 IPIIIVTGHGDVSIAVRAMKAGAVEFLQKPFTDQLLLDTVQSALTKYSAIWDQEARREKS 142 Query: 146 FTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK-INELFIR 204 +LT E ++G M +G IA +L++ +R++ ++ I + G + + ELF Sbjct: 143 NKSLASLTSREREVLGLMRAGKPNKVIASILNISVRTVEGHRATIMSKTGSRSLGELFEM 202 Query: 205 SHS 207 HS Sbjct: 203 LHS 205 >UniRef50_Q7NWW0 Probable two-component response regulator, LuxR family n=1 Tax=Chromobacterium violaceum RepID=Q7NWW0_CHRVO Length = 222 Score = 43.1 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 51/141 (36%), Gaps = 12/141 (8%) Query: 66 GYIFVDFSVSFLRL--FLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIY 123 + +DFS+ F A I+ S + + N + +IY Sbjct: 63 DVLVIDFSMPDEAKDGFAWLRVAQETARNAKIILFTSQLYLTKICQ---GKNVGVCEIIY 119 Query: 124 NDDGLDVANEKIRQL--FIGRY-----LSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVL 176 D E IR GR N LT+ E+ ++ ++ G + +IA Sbjct: 120 KGDSQLALLESIRTAADIEGRVKPEMESCDKEANRLTKKEWEVLLWIAEGMSVSEIASKK 179 Query: 177 DMDIRSIYAYKQRIEKRMGGK 197 I++I K+ + K++G K Sbjct: 180 QRSIKTISTQKRSVMKKLGIK 200 >UniRef50_P39404 Transcriptional activator protein bglJ n=99 Tax=cellular organisms RepID=BGLJ_ECOLI Length = 175 Score = 43.1 bits (100), Expect = 0.007, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 9/91 (9%) Query: 116 SAISAVIYNDDGLDVANEKIRQLFIGRYLSFTG---------GNTLTQMEFTIMGYMVSG 166 S + V+ L++ ++++ G + TL+ E I+ +M G Sbjct: 58 SPLDGVLSKASTLEIFHQELFLSLNGVRQATDRLNNQWYINQSRTLSPTEREILRFMSRG 117 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 Y+ QIAE L +I++I A+K + ++G Sbjct: 118 YSMTQIAEQLKRNIKTIRAHKFNVMSKLGVS 148 >UniRef50_B1M5J4 Two component transcriptional regulator, LuxR family n=7 Tax=Bacteria RepID=B1M5J4_METRJ Length = 222 Score = 42.7 bits (99), Expect = 0.007, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 149 GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 L+ E ++ + G++ +IA D+ ++SI YK R +++G + IR Sbjct: 153 AEALSPRETDVLRLIAQGFSNKEIARRFDLSVKSIETYKARAAEKLGLRTRAEIIR 208 >UniRef50_A1AKZ0 Two component transcriptional regulator, LuxR family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AKZ0_PELPD Length = 240 Score = 42.7 bits (99), Expect = 0.007, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 30/45 (66%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 LT+ E I+GY+ G+ QIAE+L + +R++ +++ R++ ++ Sbjct: 180 LTRREAEILGYIAQGHTNRQIAELLFVSVRTVESHRARLQGKLNA 224 >UniRef50_C7LQH4 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQH4_DESBD Length = 222 Score = 42.7 bits (99), Expect = 0.007, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 +L+ E +M + G P +IA L + +++ ++ I ++G K F+R Sbjct: 156 GSLSLREQQVMRLLAEGLTPEEIAAKLFVSRKTVLNHRYAIMTKLGIKSPVAFVR 210 >UniRef50_P44845 Nitrate/nitrite response regulator protein homolog n=109 Tax=Gammaproteobacteria RepID=NARP_HAEIN Length = 208 Score = 42.7 bits (99), Expect = 0.007, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 33/68 (48%) Query: 127 GLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAY 186 G + ++ I+ L + R ++LT E ++ + +G + QIA L + ++ + Sbjct: 124 GEVILSDSIKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQIAAQLFISEETVKVH 183 Query: 187 KQRIEKRM 194 + + +++ Sbjct: 184 IRNLLRKL 191 >UniRef50_Q5E1C3 Two component response regulator n=17 Tax=Gammaproteobacteria RepID=Q5E1C3_VIBF1 Length = 205 Score = 42.7 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 26/47 (55%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 +LT E ++ +V G Q+A+ + + +R+I ++ + K++G Sbjct: 144 SLTAREQEVLKLIVQGMKNQQMADAMCVSLRTIEVHRSNLMKKLGVN 190 >UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=Gammaproteobacteria RepID=A5F1Q5_VIBC3 Length = 216 Score = 42.7 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 127 GLDVANEKIRQLFIGRYLSFT--GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIY 184 G E + + N L++ E I+ + G + +IA +L++ R++ Sbjct: 128 GATYFCESTTSTLFSQEILPVANKPNPLSRREEAILRMVAQGCSSKKIATLLNISYRTVE 187 Query: 185 AYKQRIEKRM 194 ++Q I+ ++ Sbjct: 188 THRQNIKHKL 197 >UniRef50_B5D3J6 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5D3J6_9BACE Length = 215 Score = 42.7 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 30/71 (42%) Query: 127 GLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAY 186 G ++ + + LT E ++ + G+N +IAE+L + +I + Sbjct: 125 GGQYLCKRFKSILNRMQTEEQIKEQLTLREMEVLQAIAKGFNTREIAELLHVSNNTIETH 184 Query: 187 KQRIEKRMGGK 197 ++ + ++ + Sbjct: 185 RKSLMSKLEAR 195 >UniRef50_A3HUJ9 Transcriptional regulator, LuxR family protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HUJ9_9SPHI Length = 269 Score = 42.7 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 33/61 (54%) Query: 137 QLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 ++F+ + +LT+ E I+ ++ G +I +VL++ ++ +++ I +++G Sbjct: 191 RVFVSKNSPQLKTVSLTKKEKQIVKMILDGMKSKEIGQVLNISFNTVSTHRKNILRKLGA 250 Query: 197 K 197 K Sbjct: 251 K 251 >UniRef50_B1K3E7 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1K3E7_BURCC Length = 223 Score = 42.7 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 137 QLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 L + T +L++ E I + G + +IA + I++I K R ++G Sbjct: 149 DLLEVGQAAQTSIESLSERELEIFRMLGRGMSVTEIAMHTNRSIKTISHQKMRAMHKLGA 208 Query: 197 K 197 + Sbjct: 209 R 209 >UniRef50_C7MN84 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MN84_CRYCD Length = 215 Score = 42.7 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 133 EKIRQLFIGRYLSFTGGN--TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRI 190 + + G+ L+ EF I + GY + A+ L + ++++ ++ +I Sbjct: 132 QALSGKLHGQSGVAEKNPYHELSSREFEIFSLLAQGYTNKEAADKLFISVKTVETHRSKI 191 Query: 191 EKRMGGK 197 ++G Sbjct: 192 YAKLGVN 198 >UniRef50_C5V4D3 Transcriptional regulator, LuxR family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4D3_9PROT Length = 491 Score = 42.7 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 3/79 (3%) Query: 117 AISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVL 176 I ++I D VA + S G L++ ++G + +G QIA L Sbjct: 397 RIESLILQMDDRTVAATPEENAIV---RSEEGAGKLSRRHLDVIGLIAAGLTSAQIAARL 453 Query: 177 DMDIRSIYAYKQRIEKRMG 195 ++ ++ +++ + +++G Sbjct: 454 NISQTTVITHRRNLMRKLG 472 >UniRef50_A1TUY1 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderiales RepID=A1TUY1_ACIAC Length = 219 Score = 42.7 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Query: 143 YLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG-GKINEL 201 + + LT E I+ + G + QIA L + +R++ A++Q I +R+ G + EL Sbjct: 145 FRNQAPKPLLTPRESEILAALGRGASSKQIACDLGLSVRTVEAHRQNIRRRLELGSLAEL 204 Query: 202 FIRSHSVQH 210 ++V+H Sbjct: 205 IR--YAVEH 211 >UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QGZ7_9SPHI Length = 218 Score = 42.7 bits (99), Expect = 0.008, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 55/128 (42%), Gaps = 14/128 (10%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQ-------SLANYWRKHNSAISAVIYNDDGLD 129 L + +D+I ++ D + ++A+ + ++S ++++I + Sbjct: 83 LSMHNNEDYILRSVEAGAYGYILKDSSSDEMIKAIRTIASGEKYYSSPVASIILSGYMQQ 142 Query: 130 VANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQR 189 + R+ + L+ E I+ ++V G + +IAE L + +R++ ++ Sbjct: 143 LKKGD-------RHGRAERQSKLSNKEKEILQFLVDGMSSREIAEKLQLSVRTVDNHRAN 195 Query: 190 IEKRMGGK 197 + +R+ + Sbjct: 196 MMRRLQVR 203 >UniRef50_B1M303 Transcriptional regulator, LuxR family n=2 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1M303_METRJ Length = 252 Score = 42.7 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM-GGKINELFIRSHSV 208 L+ E ++ ++ +G++ ++A L + +R++ ++ + ++ G++ EL +H + Sbjct: 142 LSPREIDVLRFLCAGFSNKEVARRLALSVRTVETHRLNLRRKTQTGRLKELVSLAHQL 199 >UniRef50_A2P4I0 Transcriptional regulator, LuxR family protein n=9 Tax=Vibrio RepID=A2P4I0_VIBCH Length = 262 Score = 42.7 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 127 GLDVANEKIRQLFIGRYLSFTGG-NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYA 185 L++ + L + LT E + ++ SG + +IA L++ +++ Sbjct: 175 CLEIVKSNMENLLDDHSGMNSRLLEVLTPSELQVAEFIRSGMSSQEIASTLNVARKTVEN 234 Query: 186 YKQRIEKRMG 195 ++ + ++G Sbjct: 235 HRNSLRNKLG 244 >UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR family n=17 Tax=Bacteria RepID=Q1AVR6_RUBXD Length = 220 Score = 42.7 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 2/121 (1%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 L F + +++ ++ D + LA K + AV+ L V +E + Sbjct: 84 LTTFDDDEYVFRGLRAGARGYILKDTPSEELAAAIEKVHRG-EAVLDGPITLKVISE-LG 141 Query: 137 QLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 +L G G L++ E ++ + SG + +IA L + ++ + I +++G Sbjct: 142 RLSKGPAGPQPGSGGLSEREMEVLRLVASGASNREIARALYITEGTVKNHISSILRKLGF 201 Query: 197 K 197 + Sbjct: 202 R 202 >UniRef50_B6R3D7 Transcriptional regulatory protein FixJ n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R3D7_9RHOB Length = 225 Score = 42.7 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 23/47 (48%) Query: 148 GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 + LT E +MGY+ G IA L + ++++ ++ + ++ Sbjct: 150 KVDRLTNREREVMGYLAQGLQNKSIANALGLSVKTVEIHRHNVLTKL 196 >UniRef50_B2JQA9 Two component transcriptional regulator, LuxR family n=4 Tax=Burkholderia RepID=B2JQA9_BURP8 Length = 209 Score = 42.7 bits (99), Expect = 0.009, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 27/48 (56%) Query: 148 GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 G + L+ E ++ Y+ G + +IA L + +++ YK R+ +++G Sbjct: 144 GLDVLSPREMEVLQYLARGVSNKEIASRLFLSDKTVSTYKTRLCEKLG 191 >UniRef50_Q01NC6 Two component transcriptional regulator, LuxR family n=3 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NC6_SOLUE Length = 216 Score = 42.3 bits (98), Expect = 0.009, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 17/126 (13%) Query: 76 FLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKI 135 FL + ++ ++ L+ D + I+AVI +G + I Sbjct: 82 FLSMHSDESYVLKALKAGARAYLLKDS----------AEHDLIAAVIAVSEGKAFFSPAI 131 Query: 136 RQLFIGRYLSFTGGNT-------LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQ 188 ++ + Y+ LT E ++ + G N ++A +L++ + ++ ++ Sbjct: 132 SKMLVEDYMRQMQERQIEDSYELLTTREREVLQLLAEGKNNKEVAAILNLSLYTVETHRG 191 Query: 189 RIEKRM 194 I +++ Sbjct: 192 NILQKL 197 >UniRef50_Q47I89 Two component transcriptional regulator, LuxR family n=3 Tax=Betaproteobacteria RepID=Q47I89_DECAR Length = 203 Score = 42.3 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 10/79 (12%) Query: 129 DVANEKIRQLFIGRYLSFTGGNT----------LTQMEFTIMGYMVSGYNPYQIAEVLDM 178 D E I Q F + L + LT E +M +V GY+ +IAE L + Sbjct: 112 DKMLEAIEQAFNSQSLMQDRKSASEKANYLLGQLTPREQEVMNLVVGGYHNREIAEKLGI 171 Query: 179 DIRSIYAYKQRIEKRMGGK 197 +R++ +K + ++ Sbjct: 172 SVRTVEVHKAHVMSKLDVD 190 >UniRef50_A6KY33 Transcriptional regulator n=20 Tax=Bacteroidales RepID=A6KY33_BACV8 Length = 256 Score = 42.3 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 27/46 (58%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 LT E I+ + G+ +IA+ L + I +++ ++Q + +++G + Sbjct: 195 LTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVQ 240 >UniRef50_B5JGA7 Transcriptional regulator, LuxR family protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JGA7_9BACT Length = 215 Score = 42.3 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 53/107 (49%), Gaps = 10/107 (9%) Query: 98 LVSDRNMQSLANYWRKHNSAISAVIYN----DDGLDVANEKIRQLFIGRYLSFT------ 147 + +DR +++ A+ + ++ + ++ +G +E ++ L I R + + Sbjct: 91 IYADRCLKAGASGFIMKSAPLEDLVLAIETVTEGGLYVSEDVKSLMINRLANPSMNEVSG 150 Query: 148 GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 G + L+ E I+ + N +IA+ L + +++I +++ RI+ ++ Sbjct: 151 GFHNLSDRELLIVEQIGLSKNNKEIADALQISVKTIESHRSRIKAKL 197 >UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VTE0_9BACI Length = 219 Score = 42.3 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 L+Q E ++ Y+ GY +I+ L + I+++ YK+R+ +++G K +R ++++H Sbjct: 155 LSQREQEVLKYIALGYTQKEISTELFISIKTVDTYKKRVMEKIGSKKKSALVR-YALKH 212 >UniRef50_P0AGA8 Transcriptional regulatory protein uhpA n=167 Tax=Gammaproteobacteria RepID=UHPA_ECO57 Length = 196 Score = 42.3 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 26/54 (48%) Query: 144 LSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 L+ + LT+ E + + G +IA L + ++++ ++ + +++G Sbjct: 130 LASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKLGVS 183 >UniRef50_B8ET67 Two component transcriptional regulator, LuxR family n=12 Tax=Proteobacteria RepID=B8ET67_METSB Length = 223 Score = 42.3 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 26/51 (50%) Query: 146 FTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 T + LT EF I+ +++ + IA +L + +++ + I+ ++G Sbjct: 145 PTATDVLTPREFEILRLLLAEKSTEAIAAILGLSPKTVANTRYLIKAKLGV 195 >UniRef50_C3KMY2 Putative uncharacterized protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KMY2_RHISN Length = 365 Score = 42.3 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 29/50 (58%) Query: 148 GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 +L++ E ++ +V+G + IA L + +R+I ++ R+ +R+G + Sbjct: 299 RVESLSERERQVLHALVAGCSHKVIAHELGISVRTIEVHRARMMRRLGVR 348 >UniRef50_A3Z7P9 Two-component response regulator, CheY-like receiver and wHTH DNA-binding domains n=1 Tax=Synechococcus sp. RS9917 RepID=A3Z7P9_9SYNE Length = 207 Score = 42.3 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 30/55 (54%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRS 205 LT+ E ++ + +G + QIA+ + + + ++ +++ + ++G K EL + Sbjct: 144 KLTRREREVLSGIGAGLSNQQIADRMHLSVHTVETHRRNLSGKLGFKGAELVRYA 198 >UniRef50_UPI0001744DFC response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744DFC Length = 224 Score = 42.3 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 26/52 (50%) Query: 143 YLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 + +TLT E + ++ GY +IAE L + I++I ++ I R+ Sbjct: 151 SFNPNPLSTLTDREMEVFQWLSRGYGTKRIAERLGLGIKTIETHRANIMARL 202 >UniRef50_D1CEU2 Transcriptional regulator, LuxR family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CEU2_THET1 Length = 217 Score = 42.3 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 141 GRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 G+ + L++ E I+ M SG+ +IA L + + ++ ++ I +++G K Sbjct: 145 GQTQNQDLLEPLSERELEILSLMASGHTNSEIARELYVAVGTVKSHVNNIYRKLGAK 201 >UniRef50_D1BFC2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BFC2_SANKS Length = 881 Score = 42.3 bits (98), Expect = 0.010, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%) Query: 142 RYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 R F G LT E + + G+ +IA+ L + +R++ + R +++G Sbjct: 813 RLDHFEVGADLTHREQEVARLVSQGWTNQEIADTLVLSVRTVENHLHRAYRKVGVD 868 >UniRef50_C1DIN7 Response regulator, LuxR family n=16 Tax=Gammaproteobacteria RepID=C1DIN7_AZOVD Length = 246 Score = 42.3 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 31/57 (54%) Query: 141 GRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 G+ + LT E ++ +V GY +IAE L++ ++++ Y+ R+ KRM + Sbjct: 148 GQEAVQARLDALTPRERDVLLPLVQGYTNREIAEQLEISVKTVDLYRMRVMKRMQAE 204 >UniRef50_Q5P6A6 Two-component response regulator n=4 Tax=Rhodocyclaceae RepID=Q5P6A6_AZOSE Length = 218 Score = 42.3 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 40/79 (50%), Gaps = 8/79 (10%) Query: 119 SAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDM 178 +A+ + + + +EK++ +L+Q E I+ +V G + ++A +L + Sbjct: 121 AALTLSKEAMGKQSEKLKYRDC--------LESLSQREKEILDLVVGGNSSKEVARILGI 172 Query: 179 DIRSIYAYKQRIEKRMGGK 197 +++ A++ R+ ++G K Sbjct: 173 SHKTVEAHRGRLMSKLGVK 191 >UniRef50_A6GFX0 Two component transcriptional regulator, LuxR family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GFX0_9DELT Length = 220 Score = 42.3 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 30/52 (57%) Query: 145 SFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 + ++LT+ E ++ + G + +IA++L + +++I ++ RI ++G Sbjct: 149 APDPADSLTKREREVLTLVGEGKSSPEIAKILGLSVKTIEGHRGRIMAKLGV 200 >UniRef50_C9M9U6 Response regulator GacA n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9U6_9BACT Length = 217 Score = 42.3 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 144 LSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG-GKINELF 202 L++ E +++ M G I + L + ++ +++R+ ++G + EL Sbjct: 146 DGPARSMVLSEREKSVLALMAQGLTSKAIGDELGISKNTVDTHRRRMMDKLGCNSVAELL 205 Query: 203 IRSH 206 ++ Sbjct: 206 RHAY 209 >UniRef50_UPI00017458E5 two component transcriptional regulator, LuxR family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017458E5 Length = 225 Score = 42.3 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 38/75 (50%), Gaps = 3/75 (4%) Query: 126 DGLDVANEKIRQLFIGRYL---SFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRS 182 D + +A ++ L R + + T ++LTQ + ++ ++ G + +A+ L + Sbjct: 115 DAVSLALKRSANLATKRAIQKEAHTRVSSLTQRQMEVLELLIRGMSNRSVAQALGATEAT 174 Query: 183 IYAYKQRIEKRMGGK 197 I +++RI ++M + Sbjct: 175 IKIHRRRIMEKMTAE 189 >UniRef50_B7GM72 DNA-binding response regulator, NarL family (REC-HTH domains) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GM72_ANOFW Length = 213 Score = 42.3 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%) Query: 130 VANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQR 189 KIR+ F +LT+ E +I+ + GY +IA L + I+++ + R Sbjct: 131 TIAHKIRKEFCKLRKKEQMTCSLTKTEISILKLIDQGYTQKEIANHLVISIQTVKNHVSR 190 Query: 190 IEKRMGGKINE 200 I K++ K ++ Sbjct: 191 ILKKLSAKNSK 201 >UniRef50_A9BWP2 Two component transcriptional regulator, LuxR family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BWP2_DELAS Length = 218 Score = 42.3 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 137 QLFIGRYLSFTGGN-TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 +L G +L + L++ E ++ +SG +IA+ L I+++ +K + ++G Sbjct: 138 KLLGGEWLGAVRTSIELSKREEEVLLLFISGMTVSEIAKKLYRSIKTVSTHKVAVMNKLG 197 Query: 196 GK 197 + Sbjct: 198 IR 199 >UniRef50_D2TRD6 LuxR-family transcriptional regulator n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TRD6_CITRO Length = 221 Score = 42.3 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 33/46 (71%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 L++ + ++ YM GYN +IA+++++ ++I+A+K RI +R+G K Sbjct: 143 LSKKQLQVIQYMRQGYNVQRIAKLMNVSAKTIHAHKYRIMQRIGTK 188 >UniRef50_B3RA82 Response regulator protein; Response regulator receiver domain, HTH LuxR domain; higly similar to B. subtilis Transcriptional regulatory protein degU (Protease production enhancer protein) n=1 Tax=Cupriavidus taiwanensis RepID=B3RA82_CUPTR Length = 223 Score = 42.3 bits (98), Expect = 0.011, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 35/80 (43%) Query: 115 NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAE 174 + ++A+ G N +++ + LT E T++ + G + +IAE Sbjct: 112 HELVTAIRTVAAGGTYLNAELQAFLHTDEPPPSSRRALTPKEATVLKLLAEGRSNKEIAE 171 Query: 175 VLDMDIRSIYAYKQRIEKRM 194 L +R++ ++ + +++ Sbjct: 172 RLGTSVRTVETHRLHLRRKL 191 >UniRef50_UPI00016C4750 two-component transcriptional regulator, LuxR family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4750 Length = 216 Score = 42.3 bits (98), Expect = 0.012, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 27/54 (50%) Query: 141 GRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 G G L + E T++ + GY+ +I+ L ++S+ +K+R +R+ Sbjct: 131 GEGPRGPSGMALVEREVTVLVLVARGYSNKEISVKLMCSVKSVEIHKRRAMRRL 184 >UniRef50_Q2W0G1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W0G1_MAGSA Length = 225 Score = 42.3 bits (98), Expect = 0.012, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 26/46 (56%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 L+ E ++ + GY ++A +L + ++++ +++ I ++G + Sbjct: 164 LSGRERQVLKLLAEGYTNQKVAGILGISVKTVDRHRENIMNKLGVR 209 >UniRef50_P37740 C4-dicarboxylate transport transcriptional regulatory protein dctR n=6 Tax=Proteobacteria RepID=DCTR_RHOCA Length = 197 Score = 42.3 bits (98), Expect = 0.012, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 27/47 (57%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 +L+ E +M M+ G QIAE L + +R++ ++ R+ +MG + Sbjct: 142 SLSAREAEVMALMLEGLMNKQIAERLGIAMRTVEVHRSRVLAKMGAR 188 >UniRef50_Q7MEM2 Response regulator VieA n=31 Tax=Vibrio RepID=Q7MEM2_VIBVY Length = 588 Score = 41.9 bits (97), Expect = 0.012, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 143 YLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 + L++ E + + G QIA LD++ +++ YK R++ ++G K Sbjct: 522 SAQQNKLDQLSERELAVAQMLFKGLGNKQIANQLDINQKTVSTYKTRVQTKLGIK 576 >UniRef50_Q1LLE4 Two component transcriptional regulator, LuxR family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LLE4_RALME Length = 213 Score = 41.9 bits (97), Expect = 0.012, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 141 GRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKI-N 199 G S LT+ E ++ + G +IA +++ +KQ +++G + N Sbjct: 145 GAPGSGGLTAALTEKEREVLRCFLDGMTVNEIAAKFSRSKKTVSGHKQSALRKLGIRSDN 204 Query: 200 ELFIRSH 206 ELF H Sbjct: 205 ELFKVRH 211 >UniRef50_C6VVK2 Two component transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VVK2_DYAFD Length = 212 Score = 41.9 bits (97), Expect = 0.012, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 5/89 (5%) Query: 122 IYNDDGLDVANEKIRQLFIGRY----LSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLD 177 I E + + G +FT LT E I+G++ GY QI+ L+ Sbjct: 119 INTVLSGGTYFESLTKKVNGGAGDFGDTFTQKLNLTFREIEIIGFIKKGYTNEQISAALN 178 Query: 178 MDIRSIYAYKQRIEKRMG-GKINELFIRS 205 + ++ +++ I ++G + EL + Sbjct: 179 LSFFTVKTHRKNIHFKLGINNVAELIEFA 207 >UniRef50_C0N7Q7 Sigma-70, region 4 family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N7Q7_9GAMM Length = 226 Score = 41.9 bits (97), Expect = 0.012, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 7/76 (9%) Query: 122 IYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIR 181 + D +A EK+ Q + + LT EF I+ +V + IAE+L++ + Sbjct: 128 LSADIAQALAMEKLGQ-------EQSALDELTVREFEILRLLVDAKSNQDIAELLNISPK 180 Query: 182 SIYAYKQRIEKRMGGK 197 ++ I+K++G Sbjct: 181 TVSNSHYIIKKKLGVS 196 >UniRef50_A6Q7X9 Two-component response regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q7X9_SULNB Length = 223 Score = 41.9 bits (97), Expect = 0.012, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 28/46 (60%) Query: 149 GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 L++ EF ++ + +G P +IAE +++ ++I Y+ RI +++ Sbjct: 147 VEILSKREFEVLNLIAAGQAPKEIAENMNVSPKTISTYRTRIMEKL 192 >UniRef50_B9QZV4 Sigma-70, region 4 family n=3 Tax=Rhodobacteraceae RepID=B9QZV4_9RHOB Length = 236 Score = 41.9 bits (97), Expect = 0.012, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 1/109 (0%) Query: 90 ASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLD-VANEKIRQLFIGRYLSFTG 148 A IV+V + + A+ Y+ L+ ++ I +L +S Sbjct: 111 AGEGSQIVVVPVTELYPFQAFVFASGPALQVSKYDLSNLEALSAAAISRLRELGVVSGQR 170 Query: 149 GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 L+ E ++ G +IA+VLD+ R+++A+ Q ++ Sbjct: 171 PGALSTRERKVLELTAYGKTAGEIADVLDISQRTVHAHLQNASVKLNAS 219 >UniRef50_A3PKG7 Two component transcriptional regulator, LuxR family n=5 Tax=Rhodobacteraceae RepID=A3PKG7_RHOS1 Length = 240 Score = 41.9 bits (97), Expect = 0.012, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 27/55 (49%) Query: 142 RYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 R + G LT+ E +M Y+ G +IA L++ +I + + I K++G Sbjct: 170 RQAPDSSGGRLTEKEMLVMSYLAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGA 224 >UniRef50_A8AF51 Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC BAA-895 RepID=A8AF51_CITK8 Length = 174 Score = 41.9 bits (97), Expect = 0.012, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 29/46 (63%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 LT E ++ M++ +N QIAE+L++D ++ + ++ I +++G Sbjct: 112 RKLTTREQQVLALMIANHNNKQIAELLNIDYKTAHTHRASIMRKLG 157 >UniRef50_C4SZW9 DNA-binding HTH domain-containing protein n=2 Tax=Yersinia intermedia ATCC 29909 RepID=C4SZW9_YERIN Length = 192 Score = 41.9 bits (97), Expect = 0.013, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 17/113 (15%) Query: 111 WRKHNSAISAVIYNDDGLDVANEKIRQLFIGR-----------YLSFTGGNT-----LTQ 154 W +A++ ++Y D KIRQ+ + T LT Sbjct: 80 WVASPNAVAGILYKTDEKAEIKHKIRQVLNRQGSRVVDPLTPLRERPTPATANYFTPLTP 139 Query: 155 MEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKIN-ELFIRSH 206 E ++ + G+ I+++L ++I K+ K++G N ELF + H Sbjct: 140 CESAVIDLLKQGFTGKDISKILGRSEKTISGQKRSAMKKLGVCSNAELFRQIH 192 >UniRef50_C4XNR8 NarL family two-component response regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XNR8_DESMR Length = 220 Score = 41.9 bits (97), Expect = 0.013, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 27/53 (50%) Query: 142 RYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 + S LT E ++ +V G+ QIA +L + +++I +K + +++ Sbjct: 144 QAASPDPYAVLTAREREVLKLLVRGHTLTQIAGLLHLSVKTIDTHKTHVMEKL 196 >UniRef50_A6L4A3 Transcriptional regulator n=32 Tax=Bacteroidales RepID=A6L4A3_BACV8 Length = 203 Score = 41.9 bits (97), Expect = 0.013, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 126 DGLDVANEKIRQLFIGRYLSFTG-GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIY 184 D ++V N+K+ L G L+Q E I+ +V G + AE L + I ++ Sbjct: 107 DDIEVLNKKLVDLMNLGVDETDGEQEALSQREKEIICCVVRGMTNKETAEKLFLSIHTVI 166 Query: 185 AYKQRIEKRM 194 +++ I +++ Sbjct: 167 THRRNIARKL 176 >UniRef50_B4CVL8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVL8_9BACT Length = 217 Score = 41.9 bits (97), Expect = 0.013, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM----GGKINELFIRS 205 LT E I+ + G + ++A+ L + ++++ ++ I K++ + IR+ Sbjct: 153 GRLTDREREIVQLLAEGASNKEVADSLGISVKTVETHRAAIMKKLKFKSFSDLVRYAIRN 212 Query: 206 H 206 H Sbjct: 213 H 213 >UniRef50_B1K7T2 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderia RepID=B1K7T2_BURCC Length = 231 Score = 41.9 bits (97), Expect = 0.013, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 24/61 (39%) Query: 135 IRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 + ++ S L+ E ++ SG + IAE L ++I K +++ Sbjct: 137 MDRILRAAGNSGGKAPALSARELEVIRLFASGLSVNDIAEQLSRSKKTISTQKSSAMQKL 196 Query: 195 G 195 G Sbjct: 197 G 197 >UniRef50_A6FG26 Regulatory protein CsgD n=1 Tax=Moritella sp. PE36 RepID=A6FG26_9GAMM Length = 230 Score = 41.9 bits (97), Expect = 0.013, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 24/121 (19%) Query: 96 IVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSF--------- 146 I L D M++++ + +I V D LDV + I+++ G + Sbjct: 101 INLSDDTTMENISTW-----PSIFGVFNKRDELDVVCKGIQKITEGEFWMPRRTLSSLIS 155 Query: 147 ----------TGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 LT E I+ +++G + +IA+ L + +I ++ + K++ Sbjct: 156 IYRSTKAVDLDRKPELTTREQEILRQLMTGSSNLEIADALYVSEHTIKSHLYNVFKKIKV 215 Query: 197 K 197 K Sbjct: 216 K 216 >UniRef50_Q98DH9 Two-component system response regulator n=1 Tax=Mesorhizobium loti RepID=Q98DH9_RHILO Length = 215 Score = 41.9 bits (97), Expect = 0.013, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 135 IRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 ++ G+ + LT E ++ ++ G + +IA L + ++++ +++ +++ Sbjct: 138 LQDFLDGQSDVTSR--NLTNREREVVRFVSEGESNKRIAARLGVSVKTVDSHRTTAMRKL 195 Query: 195 GGK 197 G + Sbjct: 196 GLR 198 >UniRef50_B8EMC5 Two component transcriptional regulator, LuxR family n=2 Tax=Rhizobiales RepID=B8EMC5_METSB Length = 232 Score = 41.9 bits (97), Expect = 0.013, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 54/168 (32%), Gaps = 36/168 (21%) Query: 66 GYIFVDFSVSFL-------RLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAI 118 + +D ++ RL +E L + + L R +QS A Sbjct: 74 DIVILDLNLPGTGGLELLKRLLIEDPRARVLIFSMHTVTLYVARALQSGA---------- 123 Query: 119 SAVIYNDDGLDVANEKIRQLFIGR---------------YLSFTGGNTLTQMEFTIMGYM 163 I + E I Q+ G + S G +L+ E IM + Sbjct: 124 RGYISKGASAEEFVEAIHQVMGGGRYIERELAADLALNVFGSQDPGKSLSARELDIMRLL 183 Query: 164 VSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM----GGKINELFIRSHS 207 G + IA+ L + ++I ++ ++ + L + H+ Sbjct: 184 AKGKSLSAIADTLGVSYKTIANTCTAMKHKLLVQRTSDLIRLAVEMHA 231 >UniRef50_Q0FK57 Putative two-component response regulator n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FK57_9RHOB Length = 209 Score = 41.9 bits (97), Expect = 0.013, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 148 GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK-INELFIRS 205 +LT E ++ +VSG +IA L + +++ ++ R+ K+MG + I EL S Sbjct: 143 RLQSLTPRETEVLDAVVSGSLNKEIAHDLGLAEKTVKVHRARVMKKMGMRTIAELVRAS 201 >UniRef50_B0SY65 Two component transcriptional regulator, LuxR family n=1 Tax=Caulobacter sp. K31 RepID=B0SY65_CAUSK Length = 222 Score = 41.9 bits (97), Expect = 0.014, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 27/49 (55%) Query: 148 GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 G TLT E I+ + + IA +LD+ ++++ +++ I +++G Sbjct: 156 GAETLTTRELLIVQLLAESRSNKVIASMLDISVKTVESHRGNIMRKLGA 204 >UniRef50_Q7NCA4 LuxR family transcriptional regulatory protein n=1 Tax=Gloeobacter violaceus RepID=Q7NCA4_GLOVI Length = 232 Score = 41.9 bits (97), Expect = 0.014, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 2/129 (1%) Query: 68 IFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDG 127 + + ++ F+E VL+ +L W +++ + + Sbjct: 90 VLLSANLEEAARFIESGADSLWTEQSSVSVLLRAMRKTTLGQRWVDPACEVTSTLLESNR 149 Query: 128 LDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYK 187 + G T L++ E I+ + G + QIA+ L + + ++ + Sbjct: 150 SPQVAA--APVVPGHRAGVTQAVALSRREREILQLIQQGLSNQQIADHLYLSVNTVKNHM 207 Query: 188 QRIEKRMGG 196 RI ++ Sbjct: 208 SRIFTKLSA 216 >UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11VH7_CYTH3 Length = 220 Score = 41.9 bits (97), Expect = 0.014, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 5/83 (6%) Query: 115 NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAE 174 N+AIS+V+ + K++Q + LT+ E I+ + G N +IA+ Sbjct: 128 NTAISSVLVSG-----YLSKVKQTDSIQSGYSNDEYELTKREKGILKMITDGKNNREIAD 182 Query: 175 VLDMDIRSIYAYKQRIEKRMGGK 197 L + IR+I ++ I K++ K Sbjct: 183 GLGISIRTIETHRANIMKKLKVK 205 >UniRef50_D0IVR3 Two component transcriptional regulator, LuxR n=90 Tax=Bacteria RepID=D0IVR3_COMTE Length = 217 Score = 41.9 bits (97), Expect = 0.014, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 26/47 (55%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 LT E ++ +V+G QIA+ L + I+++ A++ I +++ Sbjct: 145 KLTGREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNAN 191 >UniRef50_Q11YW8 Two component transcriptional regulator, LuxR family n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11YW8_CYTH3 Length = 215 Score = 41.9 bits (97), Expect = 0.014, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 6/87 (6%) Query: 114 HNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTG------GNTLTQMEFTIMGYMVSGY 167 H I AV G + I + + + TLT+ E ++ + G Sbjct: 111 HEEIIKAVKAVSAGQKYFSPDIYSIILNGLANPELVKASQIAETLTKRELEVLKEVSMGL 170 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRM 194 + IA+ L + +R++ ++ + K++ Sbjct: 171 STKLIADKLFISVRTVETHRINLMKKL 197 >UniRef50_Q5NZX4 Two-component response regulator n=3 Tax=Betaproteobacteria RepID=Q5NZX4_AZOSE Length = 211 Score = 41.9 bits (97), Expect = 0.014, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 24/160 (15%) Query: 51 VVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANY 110 V+ I T N + L S L ++ +W + I+++S LA Sbjct: 39 VLAAIKTCNAHVLLLDMSMPGLSGVDLVRRVKSEW------PGLPILVLSMYGETQLAA- 91 Query: 111 WRKHNSAISAVIYNDDGLDVANEKIRQLFIG-RYLSFTGGNT---------------LTQ 154 + S S + G ++ IR++ G RY+ LT Sbjct: 92 -KVLQSGASGYVTKGKGREILLSAIRKVASGHRYIDPDLAEKILFDVRMPTASVQEQLTH 150 Query: 155 MEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 E I+ + +G + QIA L + +++ +K R +++ Sbjct: 151 RESQILRMLQAGKSVTQIANELSVSPKTVSTHKIRAMQKL 190 >UniRef50_A2WHU0 Response regulator n=2 Tax=Burkholderia cepacia complex RepID=A2WHU0_9BURK Length = 204 Score = 41.9 bits (97), Expect = 0.014, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 28/49 (57%) Query: 149 GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 G +LT+ E ++ V+G + +IA + ++I A KQR K++G + Sbjct: 122 GTSLTKREAEVLRLYVAGMSINEIATQMRRTKQTISAQKQRAMKKLGVE 170 >UniRef50_A4J308 Response regulator receiver protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J308_DESRM Length = 119 Score = 41.9 bits (97), Expect = 0.014, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 32/79 (40%) Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLD 177 I + L V + K+ + + N LT EF ++ + G + IA+ L Sbjct: 25 IEEALSQGYRLIVIDSKVEYVKENGKERTSNVNQLTNREFELLKLIAKGISNKAIAKQLF 84 Query: 178 MDIRSIYAYKQRIEKRMGG 196 + +++ + I ++G Sbjct: 85 ISEKTVKNHLTSIYSKLGV 103 >UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92 Tax=Burkholderiales RepID=Q3JFS6_BURP1 Length = 282 Score = 41.9 bits (97), Expect = 0.015, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 24/43 (55%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 L+ EF + + SG QIA+ L + +++ YK RI ++M Sbjct: 216 LSDREFDVFRRIASGQTLTQIADELCVSAKTVSTYKTRILEKM 258 >UniRef50_A8GBA0 Two component transcriptional regulator, LuxR family n=4 Tax=Enterobacteriaceae RepID=A8GBA0_SERP5 Length = 213 Score = 41.9 bits (97), Expect = 0.015, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 145 SFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 T G+ LT E I+G + G + QIAE+L + +++ +K+ I ++ G Sbjct: 147 QPTEGSLLTPKELQILGLLSKGLSNLQIAEMLSISNKTVSTHKKNILRKTGAS 199 >UniRef50_B6WQV4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQV4_9DELT Length = 222 Score = 41.9 bits (97), Expect = 0.015, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 2/78 (2%) Query: 125 DDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIY 184 + + RQ G L+ E I + GY+ QI + L++ +++ Sbjct: 134 GGCMAALMRQNRQRLSPAEGGPDIG-MLSPREKEIFRLLADGYSVRQIGDALNISPKTVE 192 Query: 185 AYKQRIEKRM-GGKINEL 201 +K + ++ INEL Sbjct: 193 THKYSVLTKLRASSINEL 210 >UniRef50_C7I0E4 Two component transcriptional regulator, LuxR family n=2 Tax=Thiomonas intermedia K12 RepID=C7I0E4_THIIN Length = 226 Score = 41.9 bits (97), Expect = 0.015, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 27/65 (41%) Query: 133 EKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEK 192 E++ + L+ E + +V G + Q+A+ L + +++ +K R+ Sbjct: 146 EQLANYMNEGEAAEEPHARLSDREMQVFMRLVEGKSVNQVADELHISCKTVSTHKTRLMH 205 Query: 193 RMGGK 197 ++ Sbjct: 206 KLALD 210 >UniRef50_A4CN07 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CN07_9FLAO Length = 217 Score = 41.9 bits (97), Expect = 0.015, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 26/48 (54%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKIN 199 LT+ E ++ + G QIAE L + +I +++ I K+MG + N Sbjct: 148 LTRRERQVLELIAQGRTSQQIAESLKLSRFTIDTHRKNIHKKMGIRSN 195 >UniRef50_Q2W8X3 Response regulator n=2 Tax=Magnetospirillum RepID=Q2W8X3_MAGSA Length = 216 Score = 41.9 bits (97), Expect = 0.015, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 26/50 (52%) Query: 148 GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 N+LT E+ +M + G + A+ L + +R++ ++ R+ ++M Sbjct: 140 RANSLTPREYEVMVLVAQGLSNKAAAQELGISVRTVEIHRARVMEKMAAD 189 >UniRef50_B6JD38 Two component transcriptional regulator, LuxR family n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JD38_OLICO Length = 210 Score = 41.9 bits (97), Expect = 0.015, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 LT+ E + +V+G+ +IA LD+ I+++ +K + +M + +R ++++ Sbjct: 148 TRLTRREREVFDMLVAGHKISRIARDLDLSIKTVSTHKTNLLAKMDAETTADLVR-YALR 206 Query: 210 H 210 H Sbjct: 207 H 207 >UniRef50_B8E485 Two component transcriptional regulator, LuxR family n=4 Tax=Gammaproteobacteria RepID=B8E485_SHEB2 Length = 212 Score = 41.9 bits (97), Expect = 0.015, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 8/81 (9%) Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN-TLTQMEFTIMGYMVSGYNPYQIAEVL 176 +S +Y D +R+L + ++ L+ E ++ + +G + Q+A L Sbjct: 124 LSGSVYIGDA-------VRELLNEQGINQYSTPIELSLKEIEVVRLLANGMSVTQVASYL 176 Query: 177 DMDIRSIYAYKQRIEKRMGGK 197 + +++I K +++G K Sbjct: 177 NRSVKTISTQKTNAMQKLGLK 197 >UniRef50_A6C9W9 Two component transcriptional regulator, LuxR family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C9W9_9PLAN Length = 221 Score = 41.9 bits (97), Expect = 0.015, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 26/46 (56%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 +LT + ++ ++ G + ++A + + +SI ++K RI ++G Sbjct: 157 TSLTSRQIEVLRHLARGKSVKEVARSMHLSEKSIDSHKYRIMHKLG 202 >UniRef50_Q47DK2 Two component transcriptional regulator, LuxR family n=1 Tax=Dechloromonas aromatica RCB RepID=Q47DK2_DECAR Length = 211 Score = 41.6 bits (96), Expect = 0.016, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 138 LFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG-G 196 F + G LT + I+ + SG +IA L + +++ ++ R+ +R+G Sbjct: 136 RFSDAEGTSGSGTQLTARQTEILRLVASGRTTKEIARDLGISPKTVEFHRSRLMERIGVH 195 Query: 197 KINELFIRS 205 + L + Sbjct: 196 DVTGLTRFA 204 >UniRef50_C7REC7 Two component transcriptional regulator, LuxR family n=4 Tax=Anaerococcus RepID=C7REC7_ANAPD Length = 198 Score = 41.6 bits (96), Expect = 0.016, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTG--GNTLTQMEFTIMGYMVSGYNPYQIAEV 175 + I D I+ ++ G+ T + LT E ++ ++ G IA+ Sbjct: 98 VKDFINKSIERDDLIRMIKNVYQGKSKESTKSIKDPLTNRELEVLEELIKGSRKKDIAQK 157 Query: 176 LDMDIRSIYAYKQRIEKRMGGK 197 L + R++Y + I +++G K Sbjct: 158 LYISERTLYNHIANIYEKLGAK 179 >UniRef50_Q1H354 Two component transcriptional regulator, LuxR family n=4 Tax=Proteobacteria RepID=Q1H354_METFK Length = 213 Score = 41.6 bits (96), Expect = 0.016, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 26/53 (49%) Query: 143 YLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 S L+ EF + + +G +I+ +L + +++ Y+ +++++G Sbjct: 142 SGSDDPTRLLSAREFEVFRLLAAGKGVEEISTILKISQKTVANYQTLLKQKLG 194 >UniRef50_C7LQC4 Transcriptional regulator, LuxR family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LQC4_DESBD Length = 446 Score = 41.6 bits (96), Expect = 0.016, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 30/45 (66%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 LTQME + ++ SG++ +IAE+L + + +I +++ I +++G Sbjct: 379 KLTQMEMKVCQFIQSGHSNKEIAELLSLSVETIQTHRKNIRRKLG 423 >UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LUT0_9FIRM Length = 216 Score = 41.6 bits (96), Expect = 0.016, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%) Query: 127 GLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAY 186 G + + L G L+ E ++ +V GY+ IA+ L + I+++ Y Sbjct: 128 GRYLGEREAELLIDGALEEPEEPAALSTREREVLELIVHGYSLSTIADKLYLSIKTVSTY 187 Query: 187 KQRIEKRM 194 K R+ +++ Sbjct: 188 KTRLLQKL 195 >UniRef50_B2JLH9 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JLH9_BURP8 Length = 219 Score = 41.6 bits (96), Expect = 0.017, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 16/123 (13%) Query: 82 EKDWIDYLASTDMGIVL-----VSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 D + L+ + + V+ V + +L H+ Y + + + + Sbjct: 95 NDDMLARLSRSGVAGVVDKCEGVEEFRSAALE---VMHHRR----PYFSAKIRMRLQHL- 146 Query: 137 QLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 GR G LT+ E ++ SG + IA L+ + +I K K++ Sbjct: 147 NFGNGRRG---GEPALTKKELEVIRLFASGASLTDIARHLNRSLSTIATQKSAAMKKLYL 203 Query: 197 KIN 199 + N Sbjct: 204 QTN 206 >UniRef50_Q7UXT1 Response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UXT1_RHOBA Length = 211 Score = 41.6 bits (96), Expect = 0.017, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 27/51 (52%) Query: 147 TGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 ++L+ E I+ ++ G QIA LD+ ++++ A++ I ++M Sbjct: 137 KRIDSLSPREREILALVMDGRLSKQIASQLDISVKTVEAHRANILRKMHVD 187 >UniRef50_B5JNS6 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNS6_9BACT Length = 220 Score = 41.6 bits (96), Expect = 0.018, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 27/45 (60%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 TL+ E I+ ++ SG +IA+ L + I+++ +++ I K++ Sbjct: 156 ETLSDREKQIVVFVASGMTNKEIAQNLGLSIKTVESHRSNISKKL 200 >UniRef50_P31802 Nitrate/nitrite response regulator protein narP n=142 Tax=Bacteria RepID=NARP_ECOLI Length = 215 Score = 41.6 bits (96), Expect = 0.018, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 26/47 (55%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 LT+ E ++ + G + QIA VL++ +++ + + + +++ + Sbjct: 153 VLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199 >UniRef50_B6J0B9 Response regulator n=18 Tax=Coxiella burnetii RepID=B6J0B9_COXB2 Length = 240 Score = 41.6 bits (96), Expect = 0.018, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 27/48 (56%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 + L+ + ++ + G N IA+ L + +++ +++ R+ +++G K Sbjct: 169 DQLSNRQMEVLLLLAKGMNAESIAKQLHITAKTVNSHRYRMFEKLGVK 216 >UniRef50_B6B3N4 DNA-binding response regulator, LuxR family n=2 Tax=Rhodobacterales RepID=B6B3N4_9RHOB Length = 201 Score = 41.6 bits (96), Expect = 0.019, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 60/152 (39%), Gaps = 13/152 (8%) Query: 56 LTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYL-------ASTDMGIVLVSDRNMQSLA 108 ++ ++ +D + + + ++ L T G V ++ + M++ A Sbjct: 43 FLDRYDPAKKAFMILDLRLPGMSGLQLQTHLNELNVKIPIVVVTGHGDVPIAVQAMRAGA 102 Query: 109 NYWRK---HNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVS 165 + + H I + GL + N R + + + LT E ++ +++ Sbjct: 103 VDFIEKPAHEDRILKAVETASGL-LFNR--RPALVSKKIVVDRLEKLTDREREVLHHLLL 159 Query: 166 GYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 G +IA LD+ R++ ++ RI +M + Sbjct: 160 GKLNKEIASELDVSQRTVEGHRSRIRDKMQAR 191 >UniRef50_B8FQ55 Transcriptional regulator, LuxR family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQ55_DESHD Length = 73 Score = 41.6 bits (96), Expect = 0.019, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKIN-ELFIRSHSV 208 +LT E ++ V GY+ +IA+ L ++I ++ + + I +++G EL H + Sbjct: 13 SLTYREKDVLRLRVKGYSSKKIADSLTIEITTVRTHLKHIHRKLGVSSQVELIQFVHKM 71 >UniRef50_A8UHM3 Two-component response regulator n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UHM3_9FLAO Length = 217 Score = 41.6 bits (96), Expect = 0.019, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 50/136 (36%), Gaps = 11/136 (8%) Query: 70 VDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSA----ISAVIYND 125 +D S L+ F + I + D + R +++ + + N+ + A+ Sbjct: 70 IDLSKQLLKKFPDLKIIALTSHDDASF---AKRMLKNGVHGYLLKNTDKIELLRALKTVL 126 Query: 126 DGLDVANEKIRQLFIGRYLSFTGGN----TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIR 181 G + + + + N LT+ E ++ + QI+E L + + Sbjct: 127 SGEIYLQKDMSDRLLYQRSKPKAKNGLNIKLTRREHEVLIAISEELTTQQISEKLFISPK 186 Query: 182 SIYAYKQRIEKRMGGK 197 ++ ++ I + G K Sbjct: 187 TVETHRSNIILKFGAK 202 >UniRef50_C6VU12 Transcriptional regulator, LuxR family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VU12_DYAFD Length = 216 Score = 41.6 bits (96), Expect = 0.019, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 30/53 (56%) Query: 145 SFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 + + + L++ E I+ + S Y+ +IA L + +++ +++ + +++G + Sbjct: 149 APSTRDFLSKREIEILRLVASEYSTNKIASELCISDKTVETHRRNLFQKLGVR 201 >UniRef50_D2Q6G2 Two-component response regulator, LuxR family n=2 Tax=Bifidobacterium dentium RepID=D2Q6G2_9BIFI Length = 218 Score = 41.6 bits (96), Expect = 0.020, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG-GKINELFIRSHSV 208 LT E I+ SG N QIA L + +++++++ I+ + ++ RS + Sbjct: 156 PKLTDAEQRILTLSASGLNAKQIATHLGISADTVFSHRRNIKTKFHISDWYDVIARSQQL 215 Query: 209 Q 209 Sbjct: 216 H 216 >UniRef50_C4UJG9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UJG9_YERRU Length = 222 Score = 41.6 bits (96), Expect = 0.020, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 49/119 (41%), Gaps = 6/119 (5%) Query: 79 LFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQL 138 F+ W+ IV+ ++ L NY +SAV+ + + + ++ + Sbjct: 74 FFI--QWLPLYYPQAKIIVMTQCDSIGMLKNY-LLGLGNVSAVLDSKIEIQELRQSLQAI 130 Query: 139 FIGRYLSFTGGNT---LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 G S LT E ++ +++ G +++A L + +++ ++K+ ++ Sbjct: 131 LTGSLDSKAKRKQTMLLTNQEVKVLKHLLQGMPVFKVARKLQIHCKTVSSHKRAALNKL 189 >UniRef50_Q5ZS73 Response regulator GacA n=10 Tax=Gammaproteobacteria RepID=Q5ZS73_LEGPH Length = 225 Score = 41.2 bits (95), Expect = 0.020, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 28/48 (58%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 + L++ E +M + SG N IA+ L + ++I Y+ R+ +++G K Sbjct: 153 DLLSEREMQVMLMITSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIK 200 >UniRef50_UPI0001B57527 transcriptional regulator, LuxR family protein n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B57527 Length = 845 Score = 41.2 bits (95), Expect = 0.021, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 134 KIRQLFIGRY--LSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 K+++ G+ S +GG TL++ E + +V G +IA L + R++ A+ R+ Sbjct: 769 KVQRRLAGQRKLESPSGGRTLSRRERQVAEMVVRGLTTKEIAAELFLSPRTVDAHVARVL 828 Query: 192 KRM 194 ++ Sbjct: 829 NKL 831 >UniRef50_A3XI64 DNA-binding response regulator, LuxR family protein n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XI64_9FLAO Length = 212 Score = 41.2 bits (95), Expect = 0.021, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 148 GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM-GGKINELFIRSH 206 L+ E ++ + SG IAE LD++ +++ YK R+ K++ G + EL ++ Sbjct: 146 RYKKLSTRETEVLNMLSSGKRNKDIAESLDINEKTVSTYKTRLLKKLDAGSLAELIQQAR 205 Query: 207 SVQ 209 +Q Sbjct: 206 LLQ 208 >UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C48EF Length = 220 Score = 41.2 bits (95), Expect = 0.021, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 33/66 (50%) Query: 139 FIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKI 198 +G + L++ E ++ +V G +IA+ L + ++++ Y+ R+ ++ G K Sbjct: 134 VLGGPPPPAERSQLSRRETEVLELLVKGLTHQEIADQLFLSVKTVETYRARLREKTGLKT 193 Query: 199 NELFIR 204 ++R Sbjct: 194 RADYVR 199 >UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KCH2_PSEF5 Length = 208 Score = 41.2 bits (95), Expect = 0.021, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 22/46 (47%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 LT E ++ + G +IAE L + +++ +K I ++G Sbjct: 147 ALTNRELEVLKLLAEGLTNLEIAEKLHLSNKTVSGHKINILSKLGV 192 >UniRef50_UPI000197BDC0 two component LuxR family transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BDC0 Length = 217 Score = 41.2 bits (95), Expect = 0.021, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 147 TGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSH 206 TL+ E ++ V G IA+ L+ ++I K +++G N+ I S+ Sbjct: 151 DRVKTLSPRELEVLRLFVQGKPIVDIAKQLNRSDKTISLQKNAAMRKLGVDNNQALI-SY 209 Query: 207 SVQH 210 + H Sbjct: 210 CLTH 213 >UniRef50_B4EXV5 Response regulator n=4 Tax=Gammaproteobacteria RepID=B4EXV5_PROMH Length = 219 Score = 41.2 bits (95), Expect = 0.022, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 16/93 (17%) Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRY---------LSFTGGNT-------LTQMEFTIMG 161 I I D + IRQ+ IG+ ++ T L++ E IM Sbjct: 97 IEGFIVIDSSAANVLQAIRQVCIGQRYISPEIAMDIALTKVQADLNPLHHLSERELQIMS 156 Query: 162 YMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 ++ G QIA+ L++ +++ +Y+ R+ ++ Sbjct: 157 MIIRGKKIAQIAQELNISTKTVNSYRYRMFSKL 189 >UniRef50_A9BU04 Two component transcriptional regulator, LuxR family n=2 Tax=Proteobacteria RepID=A9BU04_DELAS Length = 217 Score = 41.2 bits (95), Expect = 0.022, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 42/104 (40%), Gaps = 17/104 (16%) Query: 114 HNSAISAVIYNDDGLDVANEKIR-QLFIGRYLSFT----------------GGNTLTQME 156 +++ ++ V+ +D L ++ RY S + N+L+ E Sbjct: 101 YDAGVAGVLLKEDPLTQIMAALQCVRLNARYYSPSFQADTPRQERSVFLAERANSLSPRE 160 Query: 157 FTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINE 200 F ++ + +G + +IA L ++++ K +++ N+ Sbjct: 161 FEVLRHFANGESITEIAARLRRSVKTVSLQKNSAMRKLNVDSNQ 204 >UniRef50_C0N6H7 Response regulator receiver domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6H7_9GAMM Length = 214 Score = 41.2 bits (95), Expect = 0.022, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT--LTQMEFTIMGYMVSGYNPYQIAEV 175 + AV G + + + L+ T LT EF + + G IA Sbjct: 115 VKAVREVKSGKSFLSSDMAHKVALQSLAGDDNPTQRLTSREFEVFRLLAEGKLVDDIASR 174 Query: 176 LDMDIRSIYAYKQRIEKRMG 195 L++ +++ Y+ +++++G Sbjct: 175 LNIGQKTVANYQTSLKQKLG 194 >UniRef50_B3E9K5 Two component transcriptional regulator, LuxR family n=1 Tax=Geobacter lovleyi SZ RepID=B3E9K5_GEOLS Length = 214 Score = 41.2 bits (95), Expect = 0.022, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 27/45 (60%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 TL+ EF I+ + +G + IA L++ I+++ YK R+ ++G Sbjct: 153 TLSNREFQILRSLATGKSLKAIALDLELSIKTVSTYKARLFAKLG 197 >UniRef50_C5S952 Two component transcriptional regulator, LuxR family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S952_CHRVI Length = 208 Score = 41.2 bits (95), Expect = 0.022, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%) Query: 131 ANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRI 190 AN + R++F +LT E +M +V G IA L IR+I +++ + Sbjct: 122 ANLEFRRVFGSPRQLAERLASLTPREREVMEALVQGKANKVIAADLGASIRTIESHRANL 181 Query: 191 EKRMGGK 197 ++G + Sbjct: 182 MHKLGVR 188 >UniRef50_C1ZLY1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZLY1_PLALI Length = 243 Score = 41.2 bits (95), Expect = 0.022, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 127 GLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAY 186 +A + + + F + G LT + ++ ++ +G + +IA ++ + +S+ ++ Sbjct: 158 RQRLAQDPVSRRFSLPADTPLTG--LTGRQLEVLRHLANGASVKEIARLMHLSQKSVDSH 215 Query: 187 KQRIEKRMG 195 K RI ++G Sbjct: 216 KYRIMHKLG 224 >UniRef50_Q4ZT82 Regulatory protein, LuxR n=4 Tax=Pseudomonas syringae group RepID=Q4ZT82_PSEU2 Length = 284 Score = 41.2 bits (95), Expect = 0.023, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%) Query: 131 ANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRI 190 A E +RQ F+GR + +L+ E + +++G Q+A+ LD+ + ++ +Y +R Sbjct: 192 AMEGLRQRFLGRLEAS--ALSLSSRETEVCVGLLAGLTVPQLADRLDLKVSTVESYFKRA 249 Query: 191 EKRMG----GKINELFIRSHSVQH 210 +MG + H VQH Sbjct: 250 AVKMGIAGRSALLRWLHTEHRVQH 273 >UniRef50_Q2RYV0 DNA-binding response regulator, LuxR family n=3 Tax=Rhodothermaceae RepID=Q2RYV0_SALRD Length = 253 Score = 41.2 bits (95), Expect = 0.023, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 127 GLDVANEKIRQLFIGRYLSF-TGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYA 185 ++A++ + ++ G T E + + G + +I + L++ +++ Sbjct: 133 SREMASQILNKVARGESSEPSFPIEEFTDRELAVFQMLGEGCSIEEIQDRLNLARKTVET 192 Query: 186 YKQRIEKRMGGK-INELFIRS 205 Y++R ++++G +++L + Sbjct: 193 YRRRAKEKLGFDSVSKLLQFA 213 >UniRef50_B9QSJ5 Response regulator receiver domain protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QSJ5_9RHOB Length = 212 Score = 41.2 bits (95), Expect = 0.023, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 26/46 (56%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 LT E ++ + G ++A+ L + +R++ +++ + +++G K Sbjct: 151 LTDRERQVLTAIAKGLPNKEVAKSLGISVRTVESHRLNLREKVGNK 196 >UniRef50_C4XMF2 NarL family two-component response regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XMF2_DESMR Length = 218 Score = 41.2 bits (95), Expect = 0.024, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 27/46 (58%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMG 195 ++LT E +M +V G + ++A L++ +++ ++ + +++G Sbjct: 155 DSLTPREREVMRLVVEGLSNKEVAAALEISVKTAEHHRGSLMRKLG 200 >UniRef50_Q1IP51 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IP51_ACIBL Length = 219 Score = 41.2 bits (95), Expect = 0.024, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 142 RYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINEL 201 + G T T E ++ +V+G + +I L ++ R++ A+ ++ +++G + N + Sbjct: 145 GRIFPAGRVTFTDREKEVLELLVAGRSNKEIGSALGIEERTVKAHVAKLMRKVGVQ-NRI 203 Query: 202 FIRSHSVQH 210 + H++ H Sbjct: 204 ALSVHAITH 212 >UniRef50_Q15U24 Two component transcriptional regulator, LuxR family n=4 Tax=Gammaproteobacteria RepID=Q15U24_PSEA6 Length = 212 Score = 41.2 bits (95), Expect = 0.024, Method: Composition-based stats. Identities = 23/149 (15%), Positives = 56/149 (37%), Gaps = 7/149 (4%) Query: 56 LTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLA-------STDMGIVLVSDRNMQSLA 108 + + + LSG I +D + + + ++ L T G V ++ M+ A Sbjct: 51 FSSDDISMLSGCIVLDIRMPGMSGMECQQRLEALKCPLPIIFITGHGDVPMAVEAMKKGA 110 Query: 109 NYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYN 168 + + ++ N +Q + +LT+ E +M +++G Sbjct: 111 IEFIQKPFREQVLLDCIQHALQVNRDNQQRTLHALEVEKRCQSLTERETEVMHRVIAGQA 170 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 IA L++ R++ ++ + +M + Sbjct: 171 NKVIASELNLSQRTVEIHRANVMDKMQVR 199 >UniRef50_C6VTJ6 Two component transcriptional regulator, LuxR family n=2 Tax=Sphingobacteriales RepID=C6VTJ6_DYAFD Length = 207 Score = 41.2 bits (95), Expect = 0.024, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 25/51 (49%) Query: 146 FTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 LT+ E I+ + GY QIA L + ++ ++++ ++++ G Sbjct: 140 PKEIPRLTRREKEILELIGQGYTTQQIAAELFISTHTVESHRKNLKEKFGV 190 >UniRef50_D0FXM2 LuxR family transcriptional regulator n=3 Tax=Erwinia RepID=D0FXM2_ERWPY Length = 207 Score = 41.2 bits (95), Expect = 0.024, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 5/86 (5%) Query: 114 HNSAISAVIYNDDGLDVANEKIRQLFIGR-----YLSFTGGNTLTQMEFTIMGYMVSGYN 168 H+S I ++ L V N+++ QL R N LT+ E I+ Y+ G + Sbjct: 98 HHSTIYRNQSVENILAVVNDQMEQLDNFRTRLTPSGVNRSSNNLTRRETEILRYLARGIS 157 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRM 194 +A L++ +++ A+K+ I ++ Sbjct: 158 NGGVARFLNISEKTVSAHKRNIMSKL 183 >UniRef50_D0L5W2 Response regulator receiver n=36 Tax=Actinomycetales RepID=D0L5W2_GORB4 Length = 216 Score = 41.2 bits (95), Expect = 0.024, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 5/87 (5%) Query: 113 KHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTG-----GNTLTQMEFTIMGYMVSGY 167 + + ++AV DG V + L +G Y LT+ E ++ + G Sbjct: 110 QRSELVAAVHATADGQAVFTPGLAGLVLGEYRRIARSPGPETPVLTERETQVLREVAKGL 169 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRM 194 + QIA L + R++ + +++ Sbjct: 170 SSRQIANRLAISPRTVENHVGATLRKL 196 >UniRef50_C6C961 Two component transcriptional regulator, LuxR family n=24 Tax=Gammaproteobacteria RepID=C6C961_DICDC Length = 211 Score = 41.2 bits (95), Expect = 0.025, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%) Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLD 177 + AV G + LT E I +V+G + IAE LD Sbjct: 114 VQAVRAVHAGGSYLCADAMRALRHSRQRPKALEALTPREREIFDLLVNGLSVKTIAEQLD 173 Query: 178 MDIRSIYAYKQRIEKRM 194 + ++++ ++ + ++ Sbjct: 174 LSHKTVHVHRANVLDKL 190 >UniRef50_A1ZEE6 Two-component response regulator n=2 Tax=Microscilla marina ATCC 23134 RepID=A1ZEE6_9SPHI Length = 213 Score = 41.2 bits (95), Expect = 0.025, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 9/97 (9%) Query: 110 YWRK---HNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG------NTLTQMEFTIM 160 Y+ K + I + +G + + Q+ I R L TLT E ++ Sbjct: 102 YFHKDTEESELIMGIKKIYNGQKYFCQSVSQILINRLLDTKNSSGKTLLPTLTFREKEVL 161 Query: 161 GYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 +V+G +I + L + R++ ++ I ++ G K Sbjct: 162 EQVVAGLGNREIGDKLCISTRTVENHRANILRKFGLK 198 >UniRef50_C4ZM15 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZM15_THASP Length = 226 Score = 41.2 bits (95), Expect = 0.026, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 29/49 (59%) Query: 149 GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 + LT + I+ + SG +IA LD+ ++++ A++ +I +R+G + Sbjct: 150 ASVLTPRQTEILELIGSGLGTKEIARRLDLSVKTVEAHRAQIMERLGVR 198 >UniRef50_Q1IJ83 Two component transcriptional regulator, LuxR family n=2 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJ83_ACIBL Length = 233 Score = 41.2 bits (95), Expect = 0.026, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 27/53 (50%) Query: 147 TGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKIN 199 + LT + ++ + G ++A +L+M R++ +K RI + +G K N Sbjct: 166 DETHKLTDRQREVLQLLAEGKGMKEVAAILNMTTRTVAFHKYRIMEVLGTKNN 218 >UniRef50_C4ZNR1 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZNR1_THASP Length = 247 Score = 41.2 bits (95), Expect = 0.026, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 24/51 (47%) Query: 147 TGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 L+ E ++ ++ G QIA+ L + I+++ ++ + K M + Sbjct: 148 DRLAALSGREREVLKLVIDGRLNKQIADDLGISIKTVKVHRANMMKTMAVR 198 >UniRef50_A1JQC4 Response regulator protein n=8 Tax=Yersinia RepID=A1JQC4_YERE8 Length = 236 Score = 40.8 bits (94), Expect = 0.027, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINE-LFIRSHSV 208 TLT E ++ +++G +I+ L++ +++ K R K++G N F +H + Sbjct: 176 TLTGRETEVLRMLLNGLKQKEISVRLNISFKTVSNTKTRAFKKLGLTSNTDFFKYAHEI 234 >UniRef50_B7AC48 Transcriptional regulator, LuxR family n=2 Tax=Thermaceae RepID=B7AC48_THEAQ Length = 179 Score = 40.8 bits (94), Expect = 0.027, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 120 AVIYNDDGLDVANEKIRQLFIGR---YLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVL 176 ++ + E +R++ GR + G ++LT E ++ + G IA +L Sbjct: 77 GILATSARPEDVLEGLREVAQGRGFHKIPMLGPDSLTARERQVLRLVALGLCNADIARML 136 Query: 177 DMDIRSIYAYKQRIEKRMG 195 + R++Y + +++++G Sbjct: 137 GVSRRTVYNWVSALQEKLG 155 >UniRef50_A0NNP3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNP3_9RHOB Length = 205 Score = 40.8 bits (94), Expect = 0.027, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 26/46 (56%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 LT E ++ + G ++A+ L + +R++ +++ + +++G K Sbjct: 144 LTDRERQVLTAIARGQPNKEVAKELGISVRTVESHRLNLREKVGNK 189 >UniRef50_B8GAC9 Two component transcriptional regulator, LuxR family n=3 Tax=Chloroflexus RepID=B8GAC9_CHLAD Length = 213 Score = 40.8 bits (94), Expect = 0.027, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 27/48 (56%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 +L++ E ++ + GY +IA L++ +++ Y+ R +++G + Sbjct: 148 ESLSEREREVLVLVARGYTAAEIAGQLNLSPKTVETYRTRGMEKLGLR 195 >UniRef50_B8G137 Two component transcriptional regulator, LuxR family n=3 Tax=Desulfitobacterium hafniense RepID=B8G137_DESHD Length = 217 Score = 40.8 bits (94), Expect = 0.028, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 26/49 (53%) Query: 146 FTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 L++ E ++ + G+ IA++L + ++++ YK R+ +++ Sbjct: 151 SKKLKQLSERELEVLRNLALGHTNQDIADLLHVSVKTVETYKARVMEKL 199 >UniRef50_A8ZUE5 Transcriptional regulator, LuxR family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZUE5_DESOH Length = 269 Score = 40.8 bits (94), Expect = 0.028, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 26/48 (54%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 LT ME + + +G QIA +L + R+I A++ I +++G K Sbjct: 203 TQLTPMEMQVANLIRTGATSKQIAGMLGLSYRTIEAHRNNIRRKLGLK 250 >UniRef50_A4CPM8 Regulatory protein, LuxR:Response regulator receiver n=4 Tax=Flavobacteria RepID=A4CPM8_9FLAO Length = 226 Score = 40.8 bits (94), Expect = 0.028, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 7/78 (8%) Query: 125 DDGLDVANEKIRQLFIGRYLSFTGGN-----TLTQMEFTIMGYMVSGYNPYQIAEVLDMD 179 DG ++ Q + T L+ E ++ + SG ++A L+++ Sbjct: 136 SDGGMFITNELAQRLA--FDEGTQKPRRFFRKLSTREVEVLKMLASGKRNKEVALGLNLN 193 Query: 180 IRSIYAYKQRIEKRMGGK 197 +++ YK R+ K++ Sbjct: 194 EKTVSTYKARLMKKLNVD 211 >UniRef50_B5PK74 Transcriptional regulator, LuxR family protein n=34 Tax=Salmonella enterica RepID=B5PK74_SALET Length = 197 Score = 40.8 bits (94), Expect = 0.028, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 31/57 (54%) Query: 141 GRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 G++ + LT E ++ +V G + QI+ L++ +++IY+ + + ++G + Sbjct: 105 GQFFPRSEKVRLTANERNVLAMLVKGMDIRQISCELNVHLKTIYSVRYHVLTKLGCR 161 >UniRef50_B5JP13 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JP13_9BACT Length = 211 Score = 40.8 bits (94), Expect = 0.028, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 26/46 (56%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 LT E ++ + GY+ +IA ++ +R+I A++ I +++ + Sbjct: 148 LTPRETDVLQMVGEGYSSKEIARSFNLSVRTIDAHRSNIMRKLNLR 193 >UniRef50_B8CN77 Nitrate/nitrite DNA-binding response regulator, putative n=2 Tax=Shewanella RepID=B8CN77_SHEPW Length = 206 Score = 40.8 bits (94), Expect = 0.028, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 31/53 (58%) Query: 142 RYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 + L+ +TQ E ++ + G N +IA+ +D+ +R++ +K+ I++++ Sbjct: 135 QELASGKQALVTQREQLVLRLISLGMNNKRIAQEMDVSVRTVETHKRNIKQKL 187 >UniRef50_B2A6W2 Two component transcriptional regulator, LuxR family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6W2_NATTJ Length = 215 Score = 40.8 bits (94), Expect = 0.029, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 7/95 (7%) Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT------LTQMEFTIMGYMVSGYNPYQ 171 ISA+ G + ++ +L I Y + + L+ E ++ + GY + Sbjct: 112 ISAIRSVYQGEVIVDKTFTKLLIDYYRNPDKQSGTEKNYDLSDREKEVLQLIALGYTNKE 171 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMG-GKINELFIRS 205 IAE L + I+++ + RI++++G + +EL + Sbjct: 172 IAEKLYISIKTVETHIARIKEKLGLNRRSELVRYA 206 >UniRef50_A0PS39 Conserved hypothetical regulatory protein n=3 Tax=Mycobacterium RepID=A0PS39_MYCUA Length = 411 Score = 40.8 bits (94), Expect = 0.029, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Query: 124 NDDGLDVAN-EKIRQLFIGRYLSFTGGNT---LTQMEFTIMGYMVSGYNPYQIAEVLDMD 179 D LD+ E + + R L+ LT+ E ++ M +G QIA+ L + Sbjct: 315 QDADLDLRKIEPVERSPAARSLAEVQTRVMAMLTRREVEVLRLMAAGRTNQQIADELVIS 374 Query: 180 IRSIYAYKQRIEKRMGG 196 ++ ++ +R+ +++ Sbjct: 375 AGTVKSHVKRVLRKLHA 391 >UniRef50_C3R1G9 Transcriptional regulator n=3 Tax=Bacteroidales RepID=C3R1G9_9BACE Length = 255 Score = 40.8 bits (94), Expect = 0.029, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 25/54 (46%) Query: 144 LSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 LS T LT E ++ M G +IA L + I ++ ++Q I +++ Sbjct: 185 LSDTLDEPLTNRELEVLRLMKQGLLSKEIANTLKVSINTVNTHRQNILQKLKAN 238 >UniRef50_A0NVX8 Two component transcriptional regulator, LuxR family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NVX8_9RHOB Length = 217 Score = 40.8 bits (94), Expect = 0.029, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 29/63 (46%) Query: 132 NEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 I +F+ LT E + +++G + +IAE L + I+++ ++ + Sbjct: 131 QRHISDVFLKILEETPAPPVLTDRERQTLNLILAGRSNKEIAEGLGISIKTVDKHRTSLM 190 Query: 192 KRM 194 +++ Sbjct: 191 QKL 193 >UniRef50_C3QQ50 Transcriptional regulator n=2 Tax=Bacteroides RepID=C3QQ50_9BACE Length = 216 Score = 40.8 bits (94), Expect = 0.029, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 32/79 (40%) Query: 119 SAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDM 178 SA++ G +I L I + LT E I+ + G + +IA Sbjct: 116 SALMCTAHGERFLCHQITNLLIIGSDKPEIHSVLTVTEIDILKLIAHGKSVKEIALERTS 175 Query: 179 DIRSIYAYKQRIEKRMGGK 197 I +I +K+ I +++G Sbjct: 176 SIHTIITHKKNIFRKLGVN 194 >UniRef50_Q48GV3 DNA-binding response regulator, LuxR family n=14 Tax=Pseudomonas RepID=Q48GV3_PSE14 Length = 220 Score = 40.8 bits (94), Expect = 0.030, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 26/43 (60%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 LT + I+ +V G + +IA+ L + I++I ++ ++ KR+ Sbjct: 156 LTARQLEILRLIVRGKSTREIADGLGLSIKTIETHRSQVMKRL 198 >UniRef50_C4XGR4 Putative NarL family two-component response regulator n=2 Tax=Desulfovibrio magneticus RS-1 RepID=C4XGR4_DESMR Length = 217 Score = 40.8 bits (94), Expect = 0.030, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 32/55 (58%) Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSH 206 LTQ E +I + G + +IAE LD+ R++ Y+ I K++G ++ ++S+ Sbjct: 158 LTQRERSIAARIRRGNSTKEIAEALDLSPRTVETYRDNIRKKLGIANKKINLKSY 212 >UniRef50_Q0EZ33 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ33_9PROT Length = 217 Score = 40.8 bits (94), Expect = 0.030, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 26/46 (56%) Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 +LT+ E + + G + IA L + +++Y+++Q I +++G Sbjct: 153 SLTRRELEVCLLLTDGRSVSDIAAALHLSEKTVYSHRQHIMEKLGV 198 >UniRef50_C7RKP7 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RKP7_9PROT Length = 216 Score = 40.8 bits (94), Expect = 0.030, Method: Composition-based stats. Identities = 10/48 (20%), Positives = 26/48 (54%) Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 + LTQ EF + + G+ + A++L++ +++ + +I ++G Sbjct: 152 DRLTQREFQVFKLLSEGHALPECADILNLSSKTVSNHFTQIRAKLGVD 199 >UniRef50_A9AIC6 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderia cepacia complex RepID=A9AIC6_BURM1 Length = 229 Score = 40.8 bits (94), Expect = 0.030, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTG--GNTLTQMEFTIMGYMVSGYNPYQIAEV 175 + A Y DG + + + + LTQ E ++ VSG++ IA+ Sbjct: 133 LRACRYIQDGGACYLSPTVRTIVDQAGTVLRDNAPPLTQKEIDVVRLFVSGHSLADIAKQ 192 Query: 176 LDMDIRSIYAYKQRIEKRMGGKINELFIR 204 L + ++ K +++ N IR Sbjct: 193 LGRSVSTVSTQKYTAMRKLRADTNVHLIR 221 >UniRef50_B4CYJ9 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYJ9_9BACT Length = 219 Score = 40.8 bits (94), Expect = 0.031, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 24/48 (50%) Query: 147 TGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 G L+ E + + +G +IA L + I+++ +++ I+ ++ Sbjct: 153 DGVAKLSDRELHVFELIGAGIPTREIATRLGISIKTVETHRENIKHKL 200 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q46941 Uncharacterized protein yqeH n=35 Tax=Enterobact... 278 7e-74 UniRef50_C3SWA2 Putative uncharacterized protein n=11 Tax=Entero... 274 1e-72 UniRef50_B0BF91 Putative uncharacterized protein n=9 Tax=Enterob... 233 3e-60 UniRef50_C8Q4Z8 Transcriptional regulator, LuxR family n=1 Tax=P... 225 8e-58 UniRef50_B4SXG3 RmbA n=36 Tax=Enterobacteriaceae RepID=B4SXG3_SALNS 220 2e-56 UniRef50_D2TJM7 Putative regulatory protein n=1 Tax=Citrobacter ... 211 2e-53 UniRef50_C8Q4X9 Response regulator receiver protein n=1 Tax=Pant... 197 1e-49 UniRef50_Q9AME2 Probable HTH-type transcriptional regulator matA... 144 1e-33 UniRef50_Q04971 Vi polysaccharide biosynthesis protein tviA n=9 ... 134 2e-30 UniRef50_C1D8M5 Probable transcriptional regulatory, LuxR family... 119 6e-26 UniRef50_C1ZGK9 Response regulator containing a CheY-like receiv... 119 6e-26 UniRef50_A4TJY3 Two-component response regulator n=27 Tax=Yersin... 114 2e-24 UniRef50_B2JSN3 Two component transcriptional regulator, LuxR fa... 111 2e-23 UniRef50_Q6ML78 Two-component response regulator n=1 Tax=Bdellov... 110 3e-23 UniRef50_A6CG81 DNA-binding response regulator, LuxR family prot... 109 7e-23 UniRef50_D0LYS4 Two component transcriptional regulator, LuxR fa... 108 1e-22 UniRef50_D0IY57 Two component transcriptional regulator, LuxR n=... 107 2e-22 UniRef50_D2SB03 Two component transcriptional regulator, LuxR fa... 107 4e-22 UniRef50_A1VT42 Two component transcriptional regulator, LuxR fa... 106 5e-22 UniRef50_B6A2W0 Two component transcriptional regulator, LuxR fa... 106 6e-22 UniRef50_UPI0001746AEC response regulator with a HTH DNA-binding... 105 7e-22 UniRef50_B4D2X8 Two component transcriptional regulator, LuxR fa... 105 8e-22 UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromon... 105 1e-21 UniRef50_Q89IF1 Two-component response regulator n=2 Tax=Bradyrh... 104 2e-21 UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR fa... 103 3e-21 UniRef50_B1KE04 Two component transcriptional regulator, LuxR fa... 103 3e-21 UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=... 102 7e-21 UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 T... 102 8e-21 UniRef50_Q2YB36 Two component transcriptional regulator, LuxR fa... 102 1e-20 UniRef50_Q2RYV1 Two-component response regulator n=1 Tax=Salinib... 102 1e-20 UniRef50_D1W148 Transcriptional regulator, LuxR family n=3 Tax=P... 101 1e-20 UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP ... 100 4e-20 UniRef50_Q47FR0 Two component transcriptional regulator, LuxR fa... 96 1e-18 UniRef50_A7HA46 Two component transcriptional regulator, LuxR fa... 95 1e-18 UniRef50_C6MDL5 Two component transcriptional regulator, LuxR fa... 95 1e-18 UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR fa... 94 2e-18 UniRef50_C4KBL1 Two component transcriptional regulator, LuxR fa... 94 2e-18 UniRef50_Q13QW9 Two component transcriptional regulator, LuxR fa... 94 3e-18 UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium ... 94 4e-18 UniRef50_C4SVX3 Response regulator containing a CheY-like receiv... 92 9e-18 UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR fa... 91 2e-17 UniRef50_Q391P2 Two component transcriptional regulator, LuxR fa... 89 8e-17 UniRef50_C6C0G1 Two component transcriptional regulator, LuxR fa... 89 1e-16 UniRef50_B6IQR3 Transcriptional regulatory protein FixJ n=1 Tax=... 88 2e-16 UniRef50_A2SCN0 Two-component response regulator n=1 Tax=Methyli... 87 3e-16 Sequences not found previously or not previously below threshold: UniRef50_B1M5J4 Two component transcriptional regulator, LuxR fa... 105 1e-21 UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR fa... 103 4e-21 UniRef50_B8GAC9 Two component transcriptional regulator, LuxR fa... 102 9e-21 UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistip... 100 6e-20 UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepI... 99 8e-20 UniRef50_C7RMN3 Two component transcriptional regulator, LuxR fa... 99 8e-20 UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=... 97 3e-19 UniRef50_A6GFX0 Two component transcriptional regulator, LuxR fa... 96 6e-19 UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC... 96 7e-19 UniRef50_P31802 Nitrate/nitrite response regulator protein narP ... 96 1e-18 UniRef50_UPI0001C314AF two component transcriptional regulator, ... 96 1e-18 UniRef50_C6XAP6 Two component transcriptional regulator, LuxR fa... 95 1e-18 UniRef50_B6JD38 Two component transcriptional regulator, LuxR fa... 95 2e-18 UniRef50_C8WS10 Two component transcriptional regulator, LuxR fa... 95 2e-18 UniRef50_P0AEL9 Fimbriae Z protein n=80 Tax=Enterobacteriaceae R... 94 2e-18 UniRef50_UPI0001C31456 two component transcriptional regulator, ... 94 3e-18 UniRef50_B5YIR2 Response regulator UvrY n=1 Tax=Thermodesulfovib... 94 3e-18 UniRef50_C4XNR8 NarL family two-component response regulator n=1... 94 3e-18 UniRef50_B1ZN14 Two component transcriptional regulator, LuxR fa... 94 4e-18 UniRef50_Q01NC6 Two component transcriptional regulator, LuxR fa... 94 4e-18 UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92... 94 4e-18 UniRef50_C7RKP7 Two component transcriptional regulator, LuxR fa... 93 4e-18 UniRef50_C5T9P3 Two component transcriptional regulator, LuxR fa... 93 5e-18 UniRef50_Q46SR4 Two component transcriptional regulator, LuxR fa... 93 5e-18 UniRef50_C7MN84 Response regulator containing a CheY-like receiv... 93 5e-18 UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicut... 93 6e-18 UniRef50_B8FFJ9 Two component transcriptional regulator, LuxR fa... 93 6e-18 UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplas... 93 7e-18 UniRef50_UPI00017452CB response regulator with a HTH DNA-binding... 93 7e-18 UniRef50_B4DAD9 Two component transcriptional regulator, LuxR fa... 93 7e-18 UniRef50_A9FM25 DNA-binding response regulator n=1 Tax=Sorangium... 93 7e-18 UniRef50_A1VB77 Two component transcriptional regulator, LuxR fa... 93 7e-18 UniRef50_C5V4R9 Two component transcriptional regulator, LuxR fa... 92 8e-18 UniRef50_Q7NTU2 Probable transcriptional regulatory, LuxR family... 92 8e-18 UniRef50_Q3Z8L1 DNA-binding response regulator, LuxR family n=6 ... 92 8e-18 UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ecto... 92 9e-18 UniRef50_P44845 Nitrate/nitrite response regulator protein homol... 92 9e-18 UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR fa... 92 1e-17 UniRef50_B1ZWL0 Two component transcriptional regulator, LuxR fa... 92 1e-17 UniRef50_A0L9F1 Two component transcriptional regulator, LuxR fa... 92 1e-17 UniRef50_C7RBI1 Two component transcriptional regulator, LuxR fa... 92 1e-17 UniRef50_B4CWX5 Two component transcriptional regulator, LuxR fa... 92 1e-17 UniRef50_Q60AR8 DNA binding response regulator, LuxR family n=1 ... 92 1e-17 UniRef50_Q124P8 Two component transcriptional regulator, LuxR fa... 92 1e-17 UniRef50_C0N6J7 Sigma-70, region 4 family n=1 Tax=Methylophaga t... 92 1e-17 UniRef50_Q1LEP5 Two component transcriptional regulator, LuxR fa... 91 2e-17 UniRef50_A3D3Y4 Two component transcriptional regulator, LuxR fa... 91 2e-17 UniRef50_Q67MG8 Two-component response regulator n=1 Tax=Symbiob... 91 2e-17 UniRef50_A1ZEE6 Two-component response regulator n=2 Tax=Microsc... 91 2e-17 UniRef50_Q2IIQ2 Two component transcriptional regulator, LuxR fa... 91 2e-17 UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 ... 91 2e-17 UniRef50_B1ZP37 Two component transcriptional regulator, LuxR fa... 91 3e-17 UniRef50_Q12FM5 Two component transcriptional regulator, LuxR fa... 91 3e-17 UniRef50_C9P7K7 Two component transcriptional regulator LuxR fam... 91 4e-17 UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator rece... 91 4e-17 UniRef50_C7LXA3 Two component transcriptional regulator, LuxR fa... 90 4e-17 UniRef50_C7Q6M6 Two component transcriptional regulator, LuxR fa... 90 4e-17 UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR fa... 90 4e-17 UniRef50_Q3JAH3 Two component transcriptional regulator, LuxR fa... 90 4e-17 UniRef50_Q07JN9 Two component transcriptional regulator, LuxR fa... 90 5e-17 UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides... 90 5e-17 UniRef50_Q1ASU8 Two component transcriptional regulator, LuxR fa... 90 5e-17 UniRef50_B9XL75 Two component transcriptional regulator, LuxR fa... 90 5e-17 UniRef50_Q1H354 Two component transcriptional regulator, LuxR fa... 90 5e-17 UniRef50_Q47DK2 Two component transcriptional regulator, LuxR fa... 90 6e-17 UniRef50_B8FDP3 Two component transcriptional regulator, LuxR fa... 90 6e-17 UniRef50_C6VTJ6 Two component transcriptional regulator, LuxR fa... 90 6e-17 UniRef50_B1T1G9 Two component transcriptional regulator, LuxR fa... 89 8e-17 UniRef50_C1XWT0 Two component transcriptional regulator, LuxR fa... 89 8e-17 UniRef50_C6DD36 Two component transcriptional regulator, LuxR fa... 89 9e-17 UniRef50_C6C961 Two component transcriptional regulator, LuxR fa... 89 9e-17 UniRef50_A1WBJ7 Two component transcriptional regulator, LuxR fa... 89 9e-17 UniRef50_B8ET67 Two component transcriptional regulator, LuxR fa... 89 9e-17 UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR fa... 89 1e-16 UniRef50_C0N7Q7 Sigma-70, region 4 family n=1 Tax=Methylophaga t... 89 1e-16 UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 ... 89 1e-16 UniRef50_D0J8D6 Two component transcriptional regulator, LuxR n=... 89 1e-16 UniRef50_B2A6W2 Two component transcriptional regulator, LuxR fa... 89 1e-16 UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacilla... 89 1e-16 UniRef50_B9PAD6 Predicted protein n=33 Tax=cellular organisms Re... 89 1e-16 UniRef50_P0AGA8 Transcriptional regulatory protein uhpA n=167 Ta... 89 1e-16 UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillac... 89 1e-16 UniRef50_D0MHE1 Two component transcriptional regulator, LuxR fa... 89 1e-16 UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR fa... 89 1e-16 UniRef50_B3RA82 Response regulator protein; Response regulator r... 88 2e-16 UniRef50_A5FAZ3 Two component transcriptional regulator, LuxR fa... 88 2e-16 UniRef50_UPI0001AEC81D LuxR family transcriptional regulator n=1... 88 2e-16 UniRef50_A6UG27 Response regulator receiver protein n=1 Tax=Sino... 88 2e-16 UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR fa... 88 2e-16 UniRef50_Q313W8 Two component transcriptional regulator, LuxR fa... 88 2e-16 UniRef50_Q1YTG7 Regulatory protein, LuxR:Response regulator rece... 88 2e-16 UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR fa... 88 2e-16 UniRef50_Q3SW32 Two component transcriptional regulator, LuxR fa... 88 2e-16 UniRef50_B1ZT64 Two component transcriptional regulator, LuxR fa... 88 2e-16 UniRef50_Q9JMV7 Two-component response regulator n=2 Tax=Bradyrh... 88 2e-16 UniRef50_C4DI56 Response regulator containing a CheY-like receiv... 87 2e-16 UniRef50_Q021D5 Two component transcriptional regulator, LuxR fa... 87 3e-16 UniRef50_A3ZTK8 Two-component system response regulator-like pro... 87 3e-16 UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltapr... 87 3e-16 UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR fa... 87 3e-16 UniRef50_A5WFD3 Two component transcriptional regulator, LuxR fa... 87 3e-16 UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsoni... 87 3e-16 UniRef50_B2JQA9 Two component transcriptional regulator, LuxR fa... 87 3e-16 UniRef50_B8G137 Two component transcriptional regulator, LuxR fa... 87 4e-16 UniRef50_A1ATT6 Two component transcriptional regulator, LuxR fa... 87 4e-16 UniRef50_C1ZHR0 Response regulator n=1 Tax=Planctomyces limnophi... 87 4e-16 UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=... 87 4e-16 UniRef50_B1FBA4 Two component transcriptional regulator, LuxR fa... 87 4e-16 UniRef50_UPI0001744C34 response regulator with a HTH DNA-binding... 87 4e-16 UniRef50_A8UHM3 Two-component response regulator n=1 Tax=Flavoba... 87 4e-16 UniRef50_UPI00016C424A two component transcriptional regulator, ... 87 4e-16 UniRef50_Q15T22 Two component transcriptional regulator, LuxR fa... 87 4e-16 UniRef50_B9XQH4 Two component transcriptional regulator, LuxR fa... 87 5e-16 UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family prot... 87 5e-16 UniRef50_C0EEH8 Putative uncharacterized protein n=1 Tax=Clostri... 87 5e-16 UniRef50_C1ZLY1 Response regulator containing a CheY-like receiv... 87 5e-16 UniRef50_Q2SBZ4 Response regulator n=1 Tax=Hahella chejuensis KC... 87 5e-16 UniRef50_A6BYP5 Response regulator receiver domain protein n=1 T... 86 5e-16 UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Sele... 86 6e-16 UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=... 86 6e-16 UniRef50_A5VAL2 Response regulator receiver protein n=1 Tax=Sphi... 86 6e-16 UniRef50_C7PDQ0 Two component transcriptional regulator, LuxR fa... 86 6e-16 UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteri... 86 6e-16 UniRef50_B9TGG7 Response regulator uvrY, putative n=1 Tax=Ricinu... 86 6e-16 UniRef50_Q3K943 Putative LuxR family response regulator n=4 Tax=... 86 6e-16 UniRef50_Q2RYV0 DNA-binding response regulator, LuxR family n=3 ... 86 6e-16 UniRef50_Q5NZX4 Two-component response regulator n=3 Tax=Betapro... 86 6e-16 UniRef50_C7RJ85 Two component transcriptional regulator, LuxR fa... 86 6e-16 UniRef50_C7P9Z1 Two component transcriptional regulator, LuxR fa... 86 6e-16 UniRef50_UPI00017468E1 two-component response regulator n=1 Tax=... 86 7e-16 UniRef50_P0ACZ6 Positive transcription regulator evgA n=68 Tax=E... 86 7e-16 UniRef50_Q11YW8 Two component transcriptional regulator, LuxR fa... 86 7e-16 UniRef50_Q04VJ6 Receiver component of a two-component response r... 86 7e-16 UniRef50_A7IKS5 Response regulator receiver protein n=1 Tax=Xant... 86 9e-16 UniRef50_A0NNP3 Response regulator containing a CheY-like receiv... 86 9e-16 UniRef50_B1ZU68 Two component transcriptional regulator, LuxR fa... 86 9e-16 UniRef50_D1AEE5 Two component transcriptional regulator, LuxR fa... 86 9e-16 UniRef50_B0SY65 Two component transcriptional regulator, LuxR fa... 86 9e-16 UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR fa... 86 9e-16 UniRef50_Q5ZS73 Response regulator GacA n=10 Tax=Gammaproteobact... 86 1e-15 UniRef50_B4D4R4 Two component transcriptional regulator, LuxR fa... 86 1e-15 UniRef50_Q39C19 Two component transcriptional regulator, LuxR fa... 86 1e-15 UniRef50_Q842F8 Response regulator, two-component system n=8 Tax... 86 1e-15 UniRef50_C4ZM15 Two component transcriptional regulator, LuxR fa... 86 1e-15 UniRef50_A5FQU5 Two component transcriptional regulator, LuxR fa... 85 1e-15 UniRef50_C1DAL9 Response regulator n=3 Tax=Proteobacteria RepID=... 85 1e-15 UniRef50_B4DA09 Two component transcriptional regulator, LuxR fa... 85 1e-15 UniRef50_Q2Y9N3 Two component transcriptional regulator, LuxR fa... 85 1e-15 UniRef50_C6WV69 Two component transcriptional regulator, LuxR fa... 85 1e-15 UniRef50_C4XMF2 NarL family two-component response regulator n=1... 85 1e-15 UniRef50_C0Q9H4 Two component transcriptional regulator (LuxR fa... 85 1e-15 UniRef50_B4CYJ9 Two component transcriptional regulator, LuxR fa... 85 1e-15 UniRef50_C5V5K1 Two component transcriptional regulator, LuxR fa... 85 2e-15 UniRef50_C1TQ52 Response regulator containing a CheY-like receiv... 85 2e-15 UniRef50_Q3JL34 DNA-binding response regulator n=30 Tax=pseudoma... 85 2e-15 UniRef50_C8WT63 Two component transcriptional regulator, LuxR fa... 85 2e-15 UniRef50_B8CN77 Nitrate/nitrite DNA-binding response regulator, ... 85 2e-15 UniRef50_C1TL94 Response regulator containing a CheY-like receiv... 85 2e-15 UniRef50_A3Z7P9 Two-component response regulator, CheY-like rece... 85 2e-15 UniRef50_B9XAW3 Two component transcriptional regulator, LuxR fa... 85 2e-15 UniRef50_A0M4P6 Two-component system response regulator n=5 Tax=... 85 2e-15 UniRef50_A1K960 Probable transcriptional regulator, LuxR family ... 85 2e-15 UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Baci... 85 2e-15 UniRef50_B9E7V9 Two-component response regulator n=65 Tax=Staphy... 85 2e-15 UniRef50_UPI0001699909 response regulator n=1 Tax=Endoriftia per... 85 2e-15 UniRef50_C7PRP4 Two component transcriptional regulator, LuxR fa... 85 2e-15 UniRef50_A1TVD4 Two component transcriptional regulator, LuxR fa... 85 2e-15 UniRef50_B2STP5 Transcriptional regulator LuxR/uhpA family n=22 ... 85 2e-15 UniRef50_Q47I89 Two component transcriptional regulator, LuxR fa... 85 2e-15 UniRef50_C4TR02 Histidine kinase n=1 Tax=Yersinia kristensenii A... 85 2e-15 UniRef50_B9Z8S5 Two component transcriptional regulator, LuxR fa... 85 2e-15 UniRef50_A9WKI8 Response regulator receiver n=3 Tax=Chloroflexac... 84 2e-15 UniRef50_D0L5W2 Response regulator receiver n=36 Tax=Actinomycet... 84 2e-15 UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 ... 84 2e-15 UniRef50_Q31FU6 Two component transcriptional regulator, LuxR fa... 84 2e-15 UniRef50_C7I0E4 Two component transcriptional regulator, LuxR fa... 84 2e-15 UniRef50_Q39TN7 Two component transcriptional regulator, LuxR fa... 84 2e-15 UniRef50_A6Q7X9 Two-component response regulator n=1 Tax=Sulfuro... 84 2e-15 UniRef50_C6QBW6 Two component transcriptional regulator, LuxR fa... 84 2e-15 UniRef50_B5JP13 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 84 3e-15 UniRef50_Q15U24 Two component transcriptional regulator, LuxR fa... 84 3e-15 UniRef50_A9IGY8 Two-component response regulator n=3 Tax=Burkhol... 84 3e-15 UniRef50_C8Q9F1 Two component transcriptional regulator, LuxR fa... 84 3e-15 UniRef50_C5S952 Two component transcriptional regulator, LuxR fa... 84 3e-15 UniRef50_C3BGJ6 Two component transcriptional regulator, LuxR n=... 84 3e-15 UniRef50_D2PS71 Two component transcriptional regulator, LuxR fa... 84 3e-15 UniRef50_Q2W107 Response regulator containing a CheY-like receiv... 84 3e-15 UniRef50_C5S6K7 Two component transcriptional regulator, LuxR fa... 84 3e-15 UniRef50_UPI00016C4750 two-component transcriptional regulator, ... 84 3e-15 UniRef50_B1Y741 Two component transcriptional regulator, LuxR fa... 84 3e-15 UniRef50_A4VZN8 Response regulator containing a CheY-like receiv... 84 3e-15 UniRef50_D0LE76 Response regulator receiver n=2 Tax=Actinomyceta... 84 3e-15 UniRef50_C9P7J6 Two component transcriptional regulator LuxR fam... 84 3e-15 UniRef50_C6Y109 Response regulator receiver n=1 Tax=Pedobacter h... 84 3e-15 UniRef50_A1ZFU2 Transcriptional regulator, LuxR family n=1 Tax=M... 84 3e-15 UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=... 84 3e-15 UniRef50_A1WT06 Two component transcriptional regulator, LuxR fa... 84 3e-15 UniRef50_A1VTE6 Two component transcriptional regulator, LuxR fa... 84 3e-15 UniRef50_UPI000197BDC0 two component LuxR family transcriptional... 84 4e-15 UniRef50_Q0EZ33 Regulatory protein, LuxR:Response regulator rece... 84 4e-15 UniRef50_A0LGT7 Two component transcriptional regulator, LuxR fa... 84 4e-15 UniRef50_B5JLG5 Sigma-70, region 4 family n=1 Tax=Verrucomicrobi... 84 4e-15 UniRef50_C1SMK1 Response regulator containing a CheY-like receiv... 84 4e-15 UniRef50_B9XC41 Two component transcriptional regulator, LuxR fa... 84 4e-15 UniRef50_Q0A525 Two component transcriptional regulator, LuxR fa... 84 4e-15 >UniRef50_Q46941 Uncharacterized protein yqeH n=35 Tax=Enterobacteriaceae RepID=YQEH_ECOLI Length = 210 Score = 278 bits (712), Expect = 7e-74, Method: Composition-based stats. Identities = 210/210 (100%), Positives = 210/210 (100%) Query: 1 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNH 60 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNH Sbjct: 1 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNH 60 Query: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISA 120 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISA Sbjct: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISA 120 Query: 121 VIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI 180 VIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI Sbjct: 121 VIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI 180 Query: 181 RSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 RSIYAYKQRIEKRMGGKINELFIRSHSVQH Sbjct: 181 RSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 >UniRef50_C3SWA2 Putative uncharacterized protein n=11 Tax=Enterobacteriaceae RepID=C3SWA2_ECOLX Length = 230 Score = 274 bits (700), Expect = 1e-72, Method: Composition-based stats. Identities = 207/210 (98%), Positives = 208/210 (99%) Query: 1 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNH 60 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMW EESSYFNRGVVEGILTKNH Sbjct: 21 MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWSEESSYFNRGVVEGILTKNH 80 Query: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISA 120 NARLSGYIFVDFSVSFLRLFLEKDWIDYLAS+DMGIVLVSDRNMQSLANYWRKHNSAISA Sbjct: 81 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASSDMGIVLVSDRNMQSLANYWRKHNSAISA 140 Query: 121 VIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI 180 VIYNDDGLDVANEKIRQLFIGRYLSFT GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI Sbjct: 141 VIYNDDGLDVANEKIRQLFIGRYLSFTRGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI 200 Query: 181 RSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 RSIYAYKQRIEKRMGGKINELFIRSHSVQH Sbjct: 201 RSIYAYKQRIEKRMGGKINELFIRSHSVQH 230 >UniRef50_B0BF91 Putative uncharacterized protein n=9 Tax=Enterobacteriaceae RepID=B0BF91_ECOLX Length = 209 Score = 233 bits (594), Expect = 3e-60, Method: Composition-based stats. Identities = 93/202 (46%), Positives = 135/202 (66%) Query: 7 YKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSG 66 Y + C SC C++ P S R+ +C + CFC WPE S YF+ G++EG+L +N+N G Sbjct: 8 YGRINCMSCPSQCELKPNASLRVSFCQDYCFCTWPEGSGYFSLGIMEGLLKQNYNNLYLG 67 Query: 67 YIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDD 126 IFVDFS+S LR F + WIDYL T + IV+V D+ ++ LANYW KH+ I VIY D Sbjct: 68 CIFVDFSISHLRFFTNERWIDYLIETKLKIVIVCDKYLKPLANYWFKHSKDIFLVIYQQD 127 Query: 127 GLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAY 186 L +A EK+++ FI + +F GG +L+++EF ++ ++SG Q+A+ L++DIR+IYA Sbjct: 128 RLTLACEKLKKRFIYQRDAFFGGESLSELEFAVLSALISGDGCLQLADELNVDIRTIYAA 187 Query: 187 KQRIEKRMGGKINELFIRSHSV 208 K+R EK+MG IN LF SHS+ Sbjct: 188 KRRAEKKMGADINTLFRFSHSL 209 >UniRef50_C8Q4Z8 Transcriptional regulator, LuxR family n=1 Tax=Pantoea sp. At-9b RepID=C8Q4Z8_9ENTR Length = 206 Score = 225 bits (573), Expect = 8e-58, Method: Composition-based stats. Identities = 51/191 (26%), Positives = 99/191 (51%) Query: 8 KSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGY 67 +L+C C + C+I +E +++C + +WPE + Y + E I N Sbjct: 7 GALSCMGCRLGCRIGGDEDFNVEFCTDKKLVLWPEGNDYLKLALHELIFKGNGCELSEDT 66 Query: 68 IFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDG 127 + +D S+ L LF+ +W+ +L++ MG+VL+ DR M ++A+YW + +++I VI D G Sbjct: 67 LIIDCSLRNLGLFINDEWLTFLSAQGMGMVLIPDRRMIAIAHYWWRKSTSIKGVISTDAG 126 Query: 128 LDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYK 187 + +++ G + T+ E ++ + +G +IA +L ++S+Y +K Sbjct: 127 MGNFMRDLKKRLCGGSDRQSKTPVATEREMHVLAMIYAGRTVQEIATLLGCSVKSVYIHK 186 Query: 188 QRIEKRMGGKI 198 I+K+MG I Sbjct: 187 SAIKKKMGNDI 197 >UniRef50_B4SXG3 RmbA n=36 Tax=Enterobacteriaceae RepID=B4SXG3_SALNS Length = 205 Score = 220 bits (561), Expect = 2e-56, Method: Composition-based stats. Identities = 75/193 (38%), Positives = 118/193 (61%) Query: 10 LTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYIF 69 + C SC + CQ+ P+ + R+QYC N+ F +WP+ +++ +G +E +L HN SG+IF Sbjct: 9 VHCISCDLSCQLFPDSAVRVQYCHNAAFSIWPDGNAFLKKGFIEKLLLDRHNHLSSGFIF 68 Query: 70 VDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLD 129 VDFS LR F + W D LA + M IVL+SDR++ LANYW ++ I +IY+DD Sbjct: 69 VDFSFPNLRRFTDLQWADSLADSGMHIVLISDRSLTPLANYWILKSNKIQGIIYSDDDDI 128 Query: 130 VANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQR 189 V +K+ +LF GR + G TL EF ++ VSG + QI + ++DI+ +Y +K R Sbjct: 129 VQQQKMHRLFTGRLANSKRGRTLNYTEFILLKRFVSGISIQQIVNIDNIDIKKLYVHKLR 188 Query: 190 IEKRMGGKINELF 202 +E ++G I ++ Sbjct: 189 LENKLGHSIQKII 201 >UniRef50_D2TJM7 Putative regulatory protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJM7_CITRO Length = 211 Score = 211 bits (536), Expect = 2e-53, Method: Composition-based stats. Identities = 42/197 (21%), Positives = 91/197 (46%), Gaps = 2/197 (1%) Query: 12 CNSCSMHCQIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYIFVD 71 C C + C + C +WP ++ F + + + A + +D Sbjct: 11 CADCQLRCPHAINTLLKTTSCGTIKVAIWPGDNPLFTDSLFYILSENDKPALHEDLLLID 70 Query: 72 FSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVA 131 F + + F++ DW++ T IVLV DR MQ+LA+YW K + A++ + DG Sbjct: 71 FCLDNIAFFIDDDWLEGWKKTGARIVLVVDRFMQALAHYWHKKHPALTLLPVTGDGGSQF 130 Query: 132 NEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 + + G+ + G +T E +++ ++G + ++A VL+ ++++Y+ + + Sbjct: 131 LRDLENVLNGQSIMPDGVTAITNNEISVLRKRITGLSAQRVAAVLNCSLKTVYSCQYSLC 190 Query: 192 KRMG--GKINELFIRSH 206 +++G ++ +L I Sbjct: 191 RKLGAPARLEKLIIEHF 207 >UniRef50_C8Q4X9 Response regulator receiver protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q4X9_9ENTR Length = 201 Score = 197 bits (502), Expect = 1e-49, Method: Composition-based stats. Identities = 53/176 (30%), Positives = 97/176 (55%) Query: 23 PEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLE 82 P + +Q ++ + +WP+ + Y G+ + K HN +IFVDFS ++ F + Sbjct: 19 PAQLSDMQDHSDVEYAIWPDRNYYLRLGIHATLREKQHNHLKFSFIFVDFSHYNIKFFSD 78 Query: 83 KDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGR 142 DWI LA + G++L+SD M +LA++W KH+ I+ VIY+ D N+KI+ + IGR Sbjct: 79 ADWIKNLARSGSGLILLSDYRMDNLASWWWKHHQRIATVIYSSDCQQTINKKIKDVLIGR 138 Query: 143 YLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKI 198 + + +LT E ++ +V Y +IA+ L +D + +Y + ++K + ++ Sbjct: 139 WGNGVKAGSLTTSEVEVLNLLVREYTLTEIADSLQLDKKKLYNIRFSLQKNLTVRL 194 >UniRef50_Q9AME2 Probable HTH-type transcriptional regulator matA n=56 Tax=Bacteria RepID=MATA_ECOLX Length = 196 Score = 144 bits (364), Expect = 1e-33, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 83/173 (47%), Gaps = 13/173 (7%) Query: 39 MWPEESSYFNRGVVEGILTKNHNARLS------GYIFVDFSVSFLRLFLEKD--WIDYLA 90 +W +YF +G+ E I+ + LS ++F++ + L F+ +D W+ + Sbjct: 27 IWSPHDAYFYKGLSELIVDIDRLIYLSLEKIRKDFVFINLNTDSLTEFINRDNEWLSAVK 86 Query: 91 STDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFT-GG 149 +VL++ R ++LANYW +NS I V+Y +++ + GR+L Sbjct: 87 --GKQVVLIAARKSEALANYWY-YNSNIRGVVYAGLSR-DIRKELAYVINGRFLRKDIKK 142 Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELF 202 + +T E I+ G P IA + + ++++Y +++ E ++ K+ +L Sbjct: 143 DKITDREMEIIRMTAQGMLPKSIARIENCSVKTVYTHRRNAEAKLYSKLYKLV 195 >UniRef50_Q04971 Vi polysaccharide biosynthesis protein tviA n=9 Tax=Enterobacteriaceae RepID=TVIA_SALTI Length = 179 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 5/161 (3%) Query: 40 WPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV 99 WP YF G I + Y+FV+ + L L + ++ + IV++ Sbjct: 7 WPPNDIYFGVGAAGIIEEVSLITNDRNYLFVNLNRYSLLNALN--FFTRMSDINKIIVII 64 Query: 100 SDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN---TLTQME 156 S + LA +W + AV + + Q G + + + + + Sbjct: 65 SSSRLMPLARFWLTECKNVIAVFDAATSVQDIIRNVSQHQSGEKILTEQRDYRFRINRKD 124 Query: 157 FTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 M Y +S ++ + ++Y +++ + + G + Sbjct: 125 IVKMKYFLSESGMEELQDRFMNSSSTMYRWRKELAVKFGVR 165 >UniRef50_C1D8M5 Probable transcriptional regulatory, LuxR family n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D8M5_LARHH Length = 211 Score = 119 bits (298), Expect = 6e-26, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 66/159 (41%), Gaps = 11/159 (6%) Query: 53 EGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL---------VSDRN 103 E +L +H +G + +D +S + + + + L I L VS Sbjct: 42 ESLLAASHCVSTAGCLVLDVRLSGISGLILFERLRALGDCPPAIFLTGHADVPLAVSALK 101 Query: 104 MQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYM 163 M + A+++ K + + L N++ + + + LT+ E +M + Sbjct: 102 MGA-ADFFEKPFDDARLIARVAECLAADNQQRQARQHWQRI-DAALQQLTEREHEVMQLI 159 Query: 164 VSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELF 202 V+G QIAE LD+ I+++ ++ R+ +MG K Sbjct: 160 VAGRLNKQIAEELDISIKTVEVHRSRVLDKMGVKSAVEL 198 >UniRef50_C1ZGK9 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGK9_PLALI Length = 217 Score = 119 bits (298), Expect = 6e-26, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 17/158 (10%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIY 123 L + +D S+ L F + + + +V+ ++ ++ SL W + A Sbjct: 48 LPDVVVLDLSIPHLNGFELLEQLQHQKRPPKVLVVTANEDLDSLQRSWNLGAAGHLAKRS 107 Query: 124 NDDGLDVANEKIRQL-----------------FIGRYLSFTGGNTLTQMEFTIMGYMVSG 166 D L VA KI F TG +L++ E ++ + +G Sbjct: 108 AADELIVAIRKIAAGEKVFPSKEESKAVKTLGFNETSGRLTGAESLSERETEVLKLIAAG 167 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 + +IA LD+ ++++ YK R +++ + +R Sbjct: 168 HMAKEIAAKLDISLKTVETYKSRGMQKLSLRGRTELVR 205 >UniRef50_A4TJY3 Two-component response regulator n=27 Tax=Yersinia RepID=A4TJY3_YERPP Length = 210 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 62/157 (39%), Gaps = 15/157 (9%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWRKHNSAI 118 + +D + F + T + L + R +Q+ AN + N I Sbjct: 50 DLVIIDIELPNFDGFSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGANGFISKNKDI 109 Query: 119 SAVIYNDD----GLDVANEKIRQLFIGRYLSFT---GGNTLTQMEFTIMGYMVSGYNPYQ 171 S +++ G + G+ S L++ E ++ Y+V+G + Q Sbjct: 110 SEILFAAQNVLRGYSFFPSETLTQLAGQPSSHDPVNRARLLSEREINVLRYLVNGLSNKQ 169 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGG-KINELFIRSHS 207 IA+ + + +++ YK RI ++G + EL +H+ Sbjct: 170 IADEMFISNKTVSTYKTRILTKLGLSSVIELADYAHT 206 >UniRef50_B2JSN3 Two component transcriptional regulator, LuxR family n=28 Tax=Proteobacteria RepID=B2JSN3_BURP8 Length = 210 Score = 111 bits (277), Expect = 2e-23, Method: Composition-based stats. Identities = 26/158 (16%), Positives = 66/158 (41%), Gaps = 14/158 (8%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNSA- 117 + +D ++ + + +VL V+ R +++ A + +S Sbjct: 49 DLLLLDMTMPGISGVDLIRRVRAEQPALPVLVLSIHDEAQVASRALRAGATGYLTKDSDP 108 Query: 118 ---ISAVIYNDDGLDVANEKI--RQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQI 172 ++A+ DG + K+ +F L+ EF ++ + +G + +I Sbjct: 109 DVLLAAIRKLADGGRFIDPKLVDAMVFETHRGDMPPHEVLSDREFQVLQMLAAGKSINEI 168 Query: 173 AEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 A++ + ++I +K R+ +++G N IR ++++H Sbjct: 169 ADICALSAKTISTHKMRLMQKLGLANNAEVIR-YAIRH 205 >UniRef50_Q6ML78 Two-component response regulator n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6ML78_BDEBA Length = 204 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 12/147 (8%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYN 124 + +D + F D+I ++ +V L YW NS + A++ Sbjct: 51 PSVVLLDHLLRGSSGFEVLDFIRKFNASIRVMVFTQSLESAILKTYW---NSPVVAIVSK 107 Query: 125 DDGLDVANEKIRQLFIGRY---------LSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEV 175 L+ + + L G + G LT+ E + + +G + +IAEV Sbjct: 108 GSLLEDVPKALLALKRGERFLSANIREAIDKAGVEVLTKREIEVARMIATGRSNKEIAEV 167 Query: 176 LDMDIRSIYAYKQRIEKRMGGKINELF 202 L ++I +K I ++G + Sbjct: 168 LGCSDQTIKTHKTNIMTKLGVNTSVEV 194 >UniRef50_A6CG81 DNA-binding response regulator, LuxR family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CG81_9PLAN Length = 222 Score = 109 bits (272), Expect = 7e-23, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 74/174 (42%), Gaps = 11/174 (6%) Query: 40 WPEESSYFNRGVVEGILT--KNHNARLSGYIFVDFSVSFLRLFLEKDWIDY-------LA 90 W ES E ++++ + G + +D + + ++ + + Sbjct: 34 WLIESVGLKVQTHELASEFLESYSPEIPGCLVLDIRIPGMSGLELQEKLRERGYDIPVII 93 Query: 91 STDMGIVLVSDRNMQSLA-NYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG 149 + G V ++ R M++ A ++ K S + Y G++ + + + L Sbjct: 94 VSGYGDVPMAVRAMKAGAIDFLEKPVSDQVLLDYIQKGIETDIKNKQNRIQNQDLM-ERK 152 Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 LT+ E +M Y+V+G++ +IA L++ +++ A++ +I K+M K I Sbjct: 153 ELLTRREREVMEYVVAGFSSREIAGTLNVSFKTVEAHRAKIMKKMQAKSVPKLI 206 >UniRef50_D0LYS4 Two component transcriptional regulator, LuxR family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYS4_HALO1 Length = 212 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 65/161 (40%), Gaps = 16/161 (9%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNSA 117 + +D ++ I L ++L + R +++ AN + + Sbjct: 48 PDVLLLDITMPVKDGIEATADILALNVNTKILILSMHADEQYALRTLRAGANGFISKGAR 107 Query: 118 I----SAVIYNDDGLDVANEKIRQLFIGRYLSFTG----GNTLTQMEFTIMGYMVSGYNP 169 + A+ +G +KI F R++ TL++ EF +M ++ G Sbjct: 108 LEELLKAITDVHEGQRYLPDKIATSFAERHIRPDAEKPLVETLSKREFQVMTHLAQGMTN 167 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +IA VL + ++++ ++ + K++ + N R ++QH Sbjct: 168 REIAGVLQISVKTVDTHRSHVLKKLELRNNSDITR-FAIQH 207 >UniRef50_D0IY57 Two component transcriptional regulator, LuxR n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0IY57_COMTE Length = 201 Score = 107 bits (268), Expect = 2e-22, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 16/157 (10%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVI 122 L + VD+ + + +I YL G+ ++ + + + + + V+ Sbjct: 34 SLPDIVIVDYHMPDSQYGDGIKFIGYLLRQFEGLKVIVLTMLSNPMIVKALYKAGVKGVV 93 Query: 123 YNDDGLDVANEKIRQLFIGRYLSF----------------TGGNTLTQMEFTIMGYMVSG 166 + D + IR + +G + +LT EF ++ Y V G Sbjct: 94 FKQDDPSEVFKAIRLVSLGNIYTPPSFLETNVSLQHQMLQERFKSLTPREFEVLRYYVRG 153 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 + +IAE L+ I+++ + K +++ K N+ + Sbjct: 154 GSLAEIAERLNRSIKTVSSQKMTAMRKLEAKSNQELM 190 >UniRef50_D2SB03 Two component transcriptional regulator, LuxR family n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SB03_9ACTO Length = 248 Score = 107 bits (266), Expect = 4e-22, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 14/158 (8%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV---SDR----NMQSLANYWRKHNSA 117 + +D + W+ + + +VL SDR M++ A + Sbjct: 85 PDVVLLDHRLPDGDGVGAIAWLHAIRPSAKIVVLTATTSDRVLVAAMEAGAAGFIAKTQR 144 Query: 118 ----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN--TLTQMEFTIMGYMVSGYNPYQ 171 I V G V N K+ + R +GG LT+ E I+ + G + Sbjct: 145 LDDVIEGVRAAAQGESVVNVKLLTRLLPRLHRQSGGGGAVLTEREREILDLLARGLSNAD 204 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 IA+ L + + ++ + + ++G ++L + S +V+ Sbjct: 205 IAQQLTISVHTVRNHVANLSAKLGAH-SKLEVLSIAVR 241 >UniRef50_A1VT42 Two component transcriptional regulator, LuxR family n=7 Tax=cellular organisms RepID=A1VT42_POLNA Length = 224 Score = 106 bits (264), Expect = 5e-22, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 63/162 (38%), Gaps = 16/162 (9%) Query: 49 RGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLA 108 RG+ L R G +D V L + +++ + ++ D Q L Sbjct: 65 RGMSGIELAALFQHRFPG---IDVLV--LSMHNNLEYVKRAIESGAKGYVLKDAPAQELV 119 Query: 109 NYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYN 168 N A+ G + +++Q G S G + LT E + ++ GY+ Sbjct: 120 N----------AIRAVHAGETFFSPELQQYTEGFRASSGGNSPLTPKESATLAWLACGYS 169 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 QIA L M +R++ ++ + +++ ++ +++ H Sbjct: 170 NKQIARELSMSVRTVETHRLNLRRKLRITGQAELVK-YAIDH 210 >UniRef50_B6A2W0 Two component transcriptional regulator, LuxR family n=47 Tax=Proteobacteria RepID=B6A2W0_RHILW Length = 223 Score = 106 bits (264), Expect = 6e-22, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 13/157 (8%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL--------VSDRNMQSLANYWRKHNS 116 + +D ++ L + ++L +S M A Y K S Sbjct: 53 PQVVLMDINMPKLSGIDAIELFRNEFPEIRVVMLSMHDSREYISSSVMHGAAGYVLKDVS 112 Query: 117 ---AISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIA 173 ++A+ DG + + +G G + LT E I+G +V+G + +IA Sbjct: 113 TDEIVAAIETVADGGTYFSSGVFDALMGERA-EEGSDPLTPREHDILGLIVAGRSNREIA 171 Query: 174 EVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 EVL + + +++ ++K++G IR +++ H Sbjct: 172 EVLGISSATAETHRKNLKKKLGIATTAGLIR-YALDH 207 >UniRef50_UPI0001746AEC response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746AEC Length = 222 Score = 105 bits (263), Expect = 7e-22, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 75/208 (36%), Gaps = 33/208 (15%) Query: 20 QIMPEESPRLQYCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRL 79 + M P L+ CA + S+ G++E + + D ++ Sbjct: 26 RFMLNAQPDLEVCATAV-------SAAEALGLLEQVR--------PDLVVTDLTLGGRSG 70 Query: 80 FLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRKHNSA----ISAVIYNDDGL 128 + L +V L ++R +Q+ A + ++ ++AV G Sbjct: 71 LDLIKDVMALFPETKILVCSMHDEMLWANRTLQAGARGYVMKDADGPTFLTAVRTVLAGQ 130 Query: 129 DVANEKIRQLFIGR------YLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRS 182 + ++ + S + L+ EF + G +IA L++ ++ Sbjct: 131 RYMSSRLAASVLESFGQSKPRGSSSPIEKLSDREFEVFRLFGEGKTAKEIAAQLNLSPKT 190 Query: 183 IYAYKQRIEKRMGGKINELFIRSHSVQH 210 + ++ I++++G + IR +V+H Sbjct: 191 VSVHRDHIKEKLGFSTSAEMIR-QAVRH 217 >UniRef50_B4D2X8 Two component transcriptional regulator, LuxR family n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2X8_9BACT Length = 242 Score = 105 bits (263), Expect = 8e-22, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 60/160 (37%), Gaps = 19/160 (11%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS--------DRNMQSLANYWRKH 114 +D S+ + + I+++S R +++ A + Sbjct: 67 LNPDIAVIDISMPGTNGVELIK-LMLAEQPGLQILMLSMHDESVYALRALRAGAKGYVMK 125 Query: 115 NSAI----SAVIYNDDGLDVANEKIRQLFIGRYLSFT------GGNTLTQMEFTIMGYMV 164 A+ + + +G + K I + + T + L+ EF ++ + Sbjct: 126 GEALECVLTGLRKVGEGEIYVSPKFSDRLIFKTIQSTIAGVASPVDKLSDREFEVLRLLG 185 Query: 165 SGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 G+ +IAE L + ++++ ++ I++++G K +R Sbjct: 186 RGFGSREIAEELSLSVKTVETHRAHIKEKLGFKEAGEMVR 225 >UniRef50_B1M5J4 Two component transcriptional regulator, LuxR family n=7 Tax=Bacteria RepID=B1M5J4_METRJ Length = 222 Score = 105 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 19/165 (11%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN-------MQSLANYWRKHNS 116 VD S+ L + + +VL + +++ A + S Sbjct: 50 DPDVAVVDVSMPGLNGLELTERVAGSCPRTRVLVLTVHEDAAYVQPLLKAGARGYLLKRS 109 Query: 117 A----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG-------NTLTQMEFTIMGYMVS 165 A + AV G + + + + T G L+ E ++ + Sbjct: 110 AAEDLLRAVRAVAAGGIYLDPSVASHAMAHPATPTQGGDTEPSAEALSPRETDVLRLIAQ 169 Query: 166 GYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 G++ +IA D+ ++SI YK R +++G + IR ++ H Sbjct: 170 GFSNKEIARRFDLSVKSIETYKARAAEKLGLRTRAEIIR-YAAAH 213 >UniRef50_Q485W6 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q485W6_COLP3 Length = 215 Score = 105 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 64/161 (39%), Gaps = 12/161 (7%) Query: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRK 113 I +D S+ + + I ++L +Q+ A + Sbjct: 51 IELKPDVILMDISMPTMNGIDATEIITEQLPETKVLILSMHSNPEFVKSAIQAGAVGYLL 110 Query: 114 HNSAISAVIYN----DDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNP 169 ++ + Y +G + I +L I ++ LT E ++ Y+ G Sbjct: 111 KDTTSEEIYYAIKAVANGKTHFSSSIAKLLIDNPVNTNESEKLTTREQVVLSYLAKGKTS 170 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +IA++L++ R++ A+++ ++ ++G I S++V+H Sbjct: 171 KEIAKILNISFRTVEAHRRNMKTKLGIHSLAKLI-SYAVKH 210 >UniRef50_Q89IF1 Two-component response regulator n=2 Tax=Bradyrhizobium RepID=Q89IF1_BRAJA Length = 217 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 57/156 (36%), Gaps = 13/156 (8%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRKH 114 A + +D S+ I + +V ++ + A+ + Sbjct: 52 AHDPDVVVLDISMPGASGLEAIRNIRARSPRARILVFTMHNEAVLVKAAFSAGASGFVTK 111 Query: 115 NS----AISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG--NTLTQMEFTIMGYMVSGYN 168 +S ++A+ G ++ I + LS TG + L + E I+ G Sbjct: 112 SSEPSAVVNAIRSVARGERAMSDDIAHILADDSLSPTGSVLDQLGEREIEILRQFAGGAT 171 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 QIA L++ ++++ Y I+ + G + + +R Sbjct: 172 TEQIATHLNLSVKTVQNYHYLIKTKTGARTDAQLVR 207 >UniRef50_Q01NJ8 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q01NJ8_SOLUE Length = 224 Score = 103 bits (258), Expect = 3e-21, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 55/142 (38%), Gaps = 19/142 (13%) Query: 76 FLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKI 135 FL ++ ++D++ ++ D L I+A+ G + ++ Sbjct: 82 FLSMYDDEDYLAECVDMGANGYILKDSPADQL----------ITAIREVQRGGSYLSPRL 131 Query: 136 RQLFI--------GRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYK 187 + G TLT+ E I+ + G + +IA ++ ++++ A+K Sbjct: 132 LSRLVDDFRLQGRGGGTRSPRFGTLTKREREILKMLAEGKSVKEIAAFFELSVKTVEAHK 191 Query: 188 QRIEKRMGGKINELFIRSHSVQ 209 + +++ ++ +++Q Sbjct: 192 FNLMRKLDIHNKAQLVQ-YAIQ 212 >UniRef50_B1KE04 Two component transcriptional regulator, LuxR family n=2 Tax=Alteromonadales RepID=B1KE04_SHEWM Length = 206 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 12/161 (7%) Query: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-----------VSDRNMQSLAN 109 + + +D S+ + + ++L V +R ++ A Sbjct: 43 PNLMPDIVLMDISMPEMNGMDAAEIFKDKFPEIKILILSMHDDKEYVLSVLNRGVRGYAL 102 Query: 110 YWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNP 169 A+ +G + I L + LT E T++ + SG N Sbjct: 103 KDISAAEMFYALRVIHNGGIYYSRAISDLLVQSSQEPDKNTVLTTREQTVLRLLASGLNN 162 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 ++A LD+ +R+I +++ I+ ++ K + +R +++ H Sbjct: 163 KELARELDISVRTIETHRRNIKDKLAIKTSAGLVR-YAIDH 202 >UniRef50_B9XAQ5 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAQ5_9BACT Length = 229 Score = 103 bits (257), Expect = 4e-21, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 59/163 (36%), Gaps = 18/163 (11%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRKHNS 116 + D ++ + +V L ++R +++ + + Sbjct: 58 KPDLVLADITLPDKNGLELLKDLQAQHPKLPVLVISMHDEALYAERVLRAGGRGYIMKHE 117 Query: 117 A----ISAVIYNDDGLDVANEKIRQLFI------GRYLSFTGGNTLTQMEFTIMGYMVSG 166 + A+ + G +EK+ + G + + LT EF + + G Sbjct: 118 GGKKIMQAIRHVLSGQIFVSEKMSARILELFSGHGTQAASSPIENLTDREFEVFRLIGEG 177 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 + +IA + + +++ ++ I+ ++G K IR ++V+ Sbjct: 178 LSTKEIAANMHVSAKTVEVHRMNIKTKLGLKTAAELIR-YTVR 219 >UniRef50_B9L2G4 Transcriptional regulatory protein degU n=2 Tax=Thermomicrobia (class) RepID=B9L2G4_THERP Length = 246 Score = 102 bits (255), Expect = 7e-21, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 61/175 (34%), Gaps = 37/175 (21%) Query: 62 ARLSGYIFVDFSVSF---------------------LRLFLEKDWIDYLASTDMGIVLVS 100 + +D ++ L ++ +++++ + LV Sbjct: 71 ELQPDVVLMDINMPGMDGIRATEAIVQQYRHVHVLMLTMYDDEEYVLHAIRAGARSYLVK 130 Query: 101 DRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLS-----FTGGNTLTQM 155 + + L + A+ +G + + + + Y T G L+ Sbjct: 131 NSKPEEL----------LRAIHVAAEGGATIDPDLAPILMREYQRLLTKAPTRGQDLSDR 180 Query: 156 EFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 E T++ + GYN QIA+ L++ ++ + +++G + + +++ H Sbjct: 181 ELTMLRLLAQGYNNRQIADALNLAESTVKNNLSALFQKLGVRDRTQAV-IYAISH 234 >UniRef50_C9QDP7 DNA-binding response regulator LuxR family n=2 Tax=Vibrio RepID=C9QDP7_VIBOR Length = 209 Score = 102 bits (254), Expect = 8e-21, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 60/157 (38%), Gaps = 13/157 (8%) Query: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRK 113 + +D ++ L + + +S I+L R++++ A + Sbjct: 44 LELKPDVLLLDINMPNLNGIEVLEQLAKTSSATSVIMLSMHDSRDYVVRSVKAGAKGYVL 103 Query: 114 HN----SAISAVIYNDDGLDVANEKIRQLFIGR--YLSFTGGNTLTQMEFTIMGYMVSGY 167 + + A+ G + + + +TL++ E ++ + +G Sbjct: 104 KDVGSEELVMAINQVAQGRSYLCPQASDRLLEQINEAPEEKDDTLSKRESDVLKAIANGA 163 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 +IA+ L + +R++ ++ RI+K++G ++ Sbjct: 164 GNKEIADSLHISVRTVETHRLRIKKKLGATSTAALVK 200 >UniRef50_B8GAC9 Two component transcriptional regulator, LuxR family n=3 Tax=Chloroflexus RepID=B8GAC9_CHLAD Length = 213 Score = 102 bits (254), Expect = 9e-21, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 61/164 (37%), Gaps = 16/164 (9%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKH 114 I +D S++ + A +VL + + + A+ + Sbjct: 45 TLQPDLILLDLSLTNSSGLAAIQSLRAAAPQARILVLTMHDDEGYVRQALAAGAHGYVLK 104 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG----NTLTQMEFTIMGYMVSG 166 +A I+A+ G + + + + L +L++ E ++ + G Sbjct: 105 RAADAELIAAIRAVLRGELYIHPALTRRLLEDILPQPQPTNPWESLSEREREVLVLVARG 164 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 Y +IA L++ +++ Y+ R +++G + ++ ++ H Sbjct: 165 YTAAEIAGQLNLSPKTVETYRTRGMEKLGLRSRAALVQ-FALDH 207 >UniRef50_Q2YB36 Two component transcriptional regulator, LuxR family n=3 Tax=Betaproteobacteria RepID=Q2YB36_NITMU Length = 217 Score = 102 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 20/159 (12%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH-- 114 + + +D S+ L F I L +V+ ++R +++ A + Sbjct: 52 HADIVLMDVSLKTLSGFEVIKSIHTLLPALPVLVVSMHDEGVYAERALRAGARGYVMKQE 111 Query: 115 ---------NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVS 165 + + IY + + + ++ G N+LT EF ++ + S Sbjct: 112 PGEVLVTAIHEVLKGNIY--LSKPMHAKLLNRVAGGNSEPEPLINSLTPSEFEVLHLIGS 169 Query: 166 GYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 G++ +IA++L I++I ++ I ++ K IR Sbjct: 170 GHSSQEIAKLLSRSIKTIETHRFNIRTKLNLKDGADLIR 208 >UniRef50_Q2RYV1 Two-component response regulator n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYV1_SALRD Length = 229 Score = 102 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 67/163 (41%), Gaps = 18/163 (11%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRKHNS 116 + V+ S+ I +V L ++R +++ A+ + Sbjct: 55 DPDVVVVEISLGDADGLTLIQEIRSTVPEVRILVFSKYNEDLYAERAVEAGASGYVMKTK 114 Query: 117 A----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG------NTLTQMEFTIMGYMVSG 166 + A+ +G + + + R + +G LT E T+ + G Sbjct: 115 PTEEVMRAIELVSEGQVFLSRHVSSRILSRLVRGSGDTETSPLEKLTDRELTVFRKIGEG 174 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 ++ QIA+ LD++ ++I Y++R ++++G + E +R H+VQ Sbjct: 175 HSVRQIADQLDLNRKTIETYRRRAKEKLGHETVEDLLR-HAVQ 216 >UniRef50_D1W148 Transcriptional regulator, LuxR family n=3 Tax=Prevotella RepID=D1W148_9BACT Length = 221 Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 58/148 (39%), Gaps = 16/148 (10%) Query: 67 YIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDD 126 ++ V + FL++ ++ S+ M L + +S V ++ Sbjct: 78 FVSVSIVLENRGFFLDR-------RRKTIVLTTSNDPMTQLTGF----HSICVNVPEDEL 126 Query: 127 GLDVANEKIRQLFIGRYLSFT----GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRS 182 V + G++L L+ E ++ +V GY +IA+ L++ + + Sbjct: 127 VRSVLMLEQHAHGTGQHLPPLPKVLKKKVLSDREIEVLSLIVQGYINKEIADRLNIGMTT 186 Query: 183 IYAYKQRIEKRMGGKINELFIRSHSVQH 210 + +++ I +++G K ++V H Sbjct: 187 VITHRKNIMEKLGVKSVSALT-IYAVTH 213 >UniRef50_C5B7B5 Nitrate/nitrite response regulator protein NarP n=13 Tax=Gammaproteobacteria RepID=C5B7B5_EDWI9 Length = 215 Score = 100 bits (248), Expect = 4e-20, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 52/144 (36%), Gaps = 11/144 (7%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYL-ASTDMGIVLVSDRNMQSLA-------NYWRKHNS 116 I +D ++ L + + I+ VSD A +Y K + Sbjct: 57 PDLILLDLNMKGLSGLDTLKALRSEGIDARIIILTVSDARSDVYALVDAGADSYLLKDSE 116 Query: 117 A---ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIA 173 ++ + +G V +E + R LT+ E ++ +V G + QIA Sbjct: 117 PEALLAQIRQAAEGRSVFSESVSAYLSTRSEIADPLADLTERELDVLQEVVRGMSNKQIA 176 Query: 174 EVLDMDIRSIYAYKQRIEKRMGGK 197 L + ++ + + + +++ + Sbjct: 177 AQLHISEETVKVHIRNLLRKLNVR 200 >UniRef50_B0MVU6 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MVU6_9BACT Length = 216 Score = 99.8 bits (247), Expect = 6e-20, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 66/167 (39%), Gaps = 19/167 (11%) Query: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS--------DRNMQSLANYWR 112 A + +F+DF++ + + L + ++ +S R +Q+ A + Sbjct: 46 PATEADVVFMDFAMPGMNGAETTEKALAL-EPGLKVITLSMFGDENYYSRMVQAGAKGFL 104 Query: 113 KHNSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG-----NTLTQMEFTIMGYM 163 +S + A+ G E++ + R + G L+ E I+ + Sbjct: 105 MKDSPMDEVLRAIETVAAGGTYFCEEVLRSLASRMQTAVSGYEGSDERLSTREIEILVCV 164 Query: 164 VSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 G + +IA+ L + R++ ++ I ++ G K + ++V+H Sbjct: 165 CRGLSNQEIADELFISKRTVDKHRANILEKTGCKNTASLVV-YAVRH 210 >UniRef50_Q2W7M4 Response regulator n=3 Tax=Magnetospirillum RepID=Q2W7M4_MAGSA Length = 209 Score = 99.4 bits (246), Expect = 8e-20, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 63/161 (39%), Gaps = 14/161 (8%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWRK- 113 + +D S+ L I +A +VL + + A+ + Sbjct: 45 TLAPDVVLMDLSMPELDGVEATRRIKQVAPQVRVLVLTVANCERRVAEALAAGADGYALK 104 Query: 114 ---HNSAISAVIYNDDGLDVANEKIRQLFIGRYL--SFTGGNTLTQMEFTIMGYMVSGYN 168 H ++A+ G + + + YL S GG +LT E ++ + G+ Sbjct: 105 KLGHGELMAAINAVCAGKTYLGPGLSEDLVKEYLEGSDMGGGSLTAREREVLQLIARGHK 164 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 +IA+ L + I+++ ++ +I +++ + +++++ Sbjct: 165 NREIADELGIAIKTVETHRTKIMQKLDLHNSAELA-AYAIR 204 >UniRef50_C7RMN3 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RMN3_9PROT Length = 213 Score = 99.0 bits (245), Expect = 8e-20, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 14/160 (8%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHN 115 VD + I ++L + R +++ A+ + N Sbjct: 50 NEFDVALVDIGLPGKGGLDLLKQIKAERPRIAVLMLSMYAEEVYAVRALKAGASGYLTKN 109 Query: 116 SA----ISAVIYNDDGLDVANEKIRQLFIGR--YLSFTGGNTLTQMEFTIMGYMVSGYNP 169 S ++A+ G + + + + + L+ E ++ + SG + Sbjct: 110 SPPGTLLAAIRKVAGGGRHVSPALLEQLAVEVGQGRKSASDALSDREIEVLRRLASGESL 169 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 QIAE L + +++ Y+ RI ++ G N R +++ Sbjct: 170 TQIAEALHLSPKTVTTYRARIVEKTGLHSNAELTR-YALD 208 >UniRef50_UPI00016C48EF two-component response regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C48EF Length = 220 Score = 97.1 bits (240), Expect = 3e-19, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 57/151 (37%), Gaps = 12/151 (7%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKHNSA 117 + +D S+ + LA +VL + + A + + Sbjct: 50 PRVLCLDLSMPGWGSATTITRVTQLAPRTRVLVLTMHNDPAYVRSALAAGAAGYFLKTTP 109 Query: 118 ----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIA 173 ++A+ G V + + + G + L++ E ++ +V G +IA Sbjct: 110 SPDLLAAIRAVATGARVIDPALGDVL-GGPPPPAERSQLSRRETEVLELLVKGLTHQEIA 168 Query: 174 EVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 + L + ++++ Y+ R+ ++ G K ++R Sbjct: 169 DQLFLSVKTVETYRARLREKTGLKTRADYVR 199 >UniRef50_A6GFX0 Two component transcriptional regulator, LuxR family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GFX0_9DELT Length = 220 Score = 96.3 bits (238), Expect = 6e-19, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 58/170 (34%), Gaps = 38/170 (22%) Query: 63 RLSGYIFVDFSVSFL---------------------RLFLEKDWIDYLASTDMGIVLVSD 101 + +D ++ L ++ ++++ L+ Sbjct: 49 LAPDVVVMDINMPKLDGVGATREIREKVNAPRVLILSMYDGEEYVRPAIRAGASGYLLKG 108 Query: 102 RNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRY-------LSFTGGNTLTQ 154 + L ++A+ G + + ++ + + ++LT+ Sbjct: 109 SGLSDL----------VTAIREVAGGNAFFSPTVAKILLQESRGERSVKEAPDPADSLTK 158 Query: 155 MEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 E ++ + G + +IA++L + +++I ++ RI ++G +R Sbjct: 159 REREVLTLVGEGKSSPEIAKILGLSVKTIEGHRGRIMAKLGVHNVAGLVR 208 >UniRef50_B3DW63 DNA-binding response regulator, NarL family (REC-HTH domains) n=7 Tax=Bacteria RepID=B3DW63_METI4 Length = 243 Score = 95.9 bits (237), Expect = 7e-19, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 19/172 (11%) Query: 49 RGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSD 101 + EG + + VD S+ I +VL ++ Sbjct: 51 KNAHEGFELIEK--TMPDVVLVDISLPGKSGLELIKDIHAAYPDIALLVLSMHEESLYAE 108 Query: 102 RNMQSLANYWRKHNSA----ISAVIYNDDGLDVANEKIRQLFIG------RYLSFTGGNT 151 R +++ A + N I+A+ G +E++ + + LS + Sbjct: 109 RVLRAGARGYLMKNEGGQKLIAAIQKVLAGGISVSERVANRILQGVSGKRKALSISPIEA 168 Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 L+ EF + + GY QIAE L + ++++ AY+ I++++ K + Sbjct: 169 LSDREFEVFQLIGKGYGSRQIAEQLSLSVKTVEAYRASIKQKLYLKSGPQLV 220 >UniRef50_Q47FR0 Two component transcriptional regulator, LuxR family n=9 Tax=Betaproteobacteria RepID=Q47FR0_DECAR Length = 218 Score = 95.5 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 62/162 (38%), Gaps = 16/162 (9%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNS 116 + +D ++ I ++L + R++++ A+ + +S Sbjct: 47 TFDALVLDLTMPGRNGIELIKQIKGEFPKLPILILSMHKEDIYAVRSLKAGASGYLCKDS 106 Query: 117 AIS----AVIYNDDGLDVAN----EKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYN 168 A + A+ DG N EK+ + + LT E I ++ G Sbjct: 107 AETLLADAIRKVADGGLFINQAVAEKLTLQILHGRDTDAPHTGLTDREHQIFLMILQGLG 166 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +I L++ ++++ +K I +M + + +R +++QH Sbjct: 167 VTEIGRQLNLSVKTVSTHKASILAKMNLRNSAELVR-YAIQH 207 >UniRef50_P31802 Nitrate/nitrite response regulator protein narP n=142 Tax=Bacteria RepID=NARP_ECOLI Length = 215 Score = 95.5 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 57/151 (37%), Gaps = 14/151 (9%) Query: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNM-------QSLANYWRK 113 N I +D ++ + + + T I+L + A+ + Sbjct: 49 NRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAGADGYLL 108 Query: 114 HNSA----ISAVIYNDDGLDVANEKIRQLFIGRY---LSFTGGNTLTQMEFTIMGYMVSG 166 +S + A+ G V +E++ Q R + LT+ E ++ + G Sbjct: 109 KDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLHELAQG 168 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 + QIA VL++ +++ + + + +++ + Sbjct: 169 LSNKQIASVLNISEQTVKVHIRNLLRKLNVR 199 >UniRef50_UPI0001C314AF two component transcriptional regulator, LuxR family n=2 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C314AF Length = 228 Score = 95.5 bits (236), Expect = 1e-18, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 60/160 (37%), Gaps = 12/160 (7%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKH 114 A + +D ++ + + +VL + ++S A + Sbjct: 57 AHHPHVLVLDLNMPGEQSLPAIPRLVAELPETAVVVLTMQQDPAFAREALRSGARGYVLK 116 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 +A + AV +G N ++ + LT E ++ + G+ Sbjct: 117 EAADDELVQAVRLAREGRTYLNPELGARMAAEPPPSGPPDDLTARELEVLRLIALGHTNA 176 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +IA+ L + IR++ +++ I++++ +R +++ H Sbjct: 177 EIAQQLFLSIRTVESHRAHIQQKVRRSSRAELVR-YALDH 215 >UniRef50_A7HA46 Two component transcriptional regulator, LuxR family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HA46_ANADF Length = 212 Score = 95.1 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 18/168 (10%), Positives = 52/168 (30%), Gaps = 20/168 (11%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDR-------NMQSLANYWRKH 114 + +D ++ L I I+L + + A + Sbjct: 41 ELRPDVVVLDVTMPELNGLEATREIRASVPDTEIILLTVHDSDQLLGQALDAGARGYVLK 100 Query: 115 NSAISAVIYNDDGLDVANEKIRQLFIGRY------------LSFTGGNTLTQMEFTIMGY 162 A ++ D L + R +LTQ E ++ Sbjct: 101 EDAARHLVDAIDALSKHAPYVPSRAAERPGNAAAQERNTVVSRGGRVTSLTQREREVLRL 160 Query: 163 MVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 + G + ++A L + +++ ++ + +++G + +++++ Sbjct: 161 LAQGDSNREVAGQLSISAKTVETHRANVMRKLGASSIVDLV-HYAIRN 207 >UniRef50_C6MDL5 Two component transcriptional regulator, LuxR family n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MDL5_9PROT Length = 218 Score = 95.1 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 61/157 (38%), Gaps = 20/157 (12%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH---- 114 + +D ++ + F + L T + + ++R +++ A + Sbjct: 54 DIVLLDVTLKTVSGFEVIKSMHALIPTLPVLFVSMHDESVYAERALRAGARGYVMKQEPG 113 Query: 115 -------NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGY 167 + + +Y + + ++++ G NTLT EF ++ + G+ Sbjct: 114 EILLAAIHEVLKGNVY--LSKQMHEKLLKRIASGHSEPEQLINTLTPSEFEVLHLIGQGH 171 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 + +IA++L I++I ++ I ++ K IR Sbjct: 172 SSQEIAKLLCRSIKTIETHRFNIRVKLHLKDGADLIR 208 >UniRef50_C6XAP6 Two component transcriptional regulator, LuxR family n=3 Tax=cellular organisms RepID=C6XAP6_METSD Length = 214 Score = 95.1 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 59/162 (36%), Gaps = 14/162 (8%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKH 114 L +D S+ + I T ++ + + ++S A + Sbjct: 49 EYLPDVTVMDLSMPGMGGLEAMRRILARYRTARVLIFSMHENAAFAMQTLKSGARGYVAK 108 Query: 115 N----SAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG--NTLTQMEFTIMGYMVSGYN 168 + AV+ G + I Q + + G + L+ EF + G N Sbjct: 109 TGSFDELVKAVVEVARGKSYISTSIAQKIALQTVIGDGDLISQLSPREFEVFRLFAEGKN 168 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +IAEVL + +++ Y +++++G +R +++H Sbjct: 169 AEEIAEVLKISQKTVANYHTLVKQKLGLSNPVEMVR-FAIKH 209 >UniRef50_B6JD38 Two component transcriptional regulator, LuxR family n=1 Tax=Oligotropha carboxidovorans OM5 RepID=B6JD38_OLICO Length = 210 Score = 94.8 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 64/160 (40%), Gaps = 16/160 (10%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNSA- 117 + +D S+ + +A IVL +++ A+ + NSA Sbjct: 49 DIVLLDLSMPGISGITLVRAAREIAGAHRIIVLSMHEEHQYVVEALKAGADGYVTKNSAS 108 Query: 118 ---ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN----TLTQMEFTIMGYMVSGYNPY 170 I+A+ G + Q I R + + LT+ E + +V+G+ Sbjct: 109 DQLIAAIRKVSQGELFVSAAASQEAILREMRTSPTELPHTRLTRREREVFDMLVAGHKIS 168 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +IA LD+ I+++ +K + +M + +R ++++H Sbjct: 169 RIARDLDLSIKTVSTHKTNLLAKMDAETTADLVR-YALRH 207 >UniRef50_C8WS10 Two component transcriptional regulator, LuxR family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WS10_ALIAD Length = 224 Score = 94.8 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 61/159 (38%), Gaps = 14/159 (8%) Query: 65 SGYIFVDFSVS-FLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKHNS 116 + +D + L + +A I+L ++ + + + + Sbjct: 50 PDVMLMDVHMPQGLDGITTARHLRQIAPQVRVIMLTMFDDRVHVEKMLDAGVSGIVFKHD 109 Query: 117 A----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTG-GNTLTQMEFTIMGYMVSGYNPYQ 171 ++A+ + G + + Q +S + L+ E ++ + GY + Sbjct: 110 DSSEIVAAIQHGQPGHPYLSRRWGQRANAETVSPSRTAERLSPRETEVLVLLAQGYTNRE 169 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +A+ L + ++++ ++Q I +R+G +R ++ Q+ Sbjct: 170 VADALHISVKTVETHRQHIMRRIGLHSRAALVR-YAYQN 207 >UniRef50_B1Y1Z3 Two component transcriptional regulator, LuxR family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1Z3_LEPCP Length = 235 Score = 94.4 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 15/159 (9%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH---- 114 VD S+ + I +VL + R ++ AN + Sbjct: 60 DLAIVDLSMPGMNGLDLIKRIRTEFPRVRVLVLSMHAEEQYAMRAFKAGANGYVTKDGAS 119 Query: 115 NSAISAVIYNDDGLDVANEKIRQL---FIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQ 171 ++AV G + + + + G L+ E ++ +V+G Sbjct: 120 AELVNAVRKVATGGAYVTASLAERVVLQLNGATTAPGHAQLSDRELEVLRRIVAGERITD 179 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 IAE L + ++++ +K RI++++ IR + + H Sbjct: 180 IAEALHLSVKTVSTHKSRIQEKLQLPTMAALIR-YGMAH 217 >UniRef50_P0AEL9 Fimbriae Z protein n=80 Tax=Enterobacteriaceae RepID=FIMZ_ECO57 Length = 210 Score = 94.4 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 14/154 (9%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWRKHNSAI 118 I +D + F I + ST + L S R +Q+ AN + + Sbjct: 51 DLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQ 110 Query: 119 SAVIYNDD----GLDVANEKIRQLFIGR--YLSFTGGNTLTQMEFTIMGYMVSGYNPYQI 172 + + + G + + + L+ E TI+ Y+VSG + +I Sbjct: 111 NDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTVTVLSNREVTILRYLVSGLSNKEI 170 Query: 173 AEVLDMDIRSIYAYKQRIEKRMG-GKINELFIRS 205 A+ L + +++ A+K I ++G I EL + Sbjct: 171 ADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYA 204 >UniRef50_C4KBL1 Two component transcriptional regulator, LuxR family n=8 Tax=Betaproteobacteria RepID=C4KBL1_THASP Length = 212 Score = 94.4 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 9/146 (6%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLA-------STDMGIVLVSDRNMQSLA-NYWRKHNSA 117 G + +D + + + + T G V ++ ++ A ++ K Sbjct: 55 GCVLLDVRMPGMSGLEVFEELGRRRCGLPVVFITGHGDVPMAVSALKQGAVDFVEKPFGE 114 Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLD 177 + + L + R + + LTQ E ++ ++ G QIA+VL Sbjct: 115 REMLRVVEQCLR-LERETRDRRLQEADTARRLGLLTQREREVLELIIVGKLNKQIADVLG 173 Query: 178 MDIRSIYAYKQRIEKRMGGKINELFI 203 + I+++ ++ R+ ++MG + Sbjct: 174 ISIKTVEVHRARVMEKMGAHSLAELV 199 >UniRef50_UPI0001C31456 two component transcriptional regulator, LuxR family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31456 Length = 213 Score = 94.0 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 18/166 (10%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSL--------ANYWRK 113 I +D + + + + + + IV+ + + L A Y K Sbjct: 46 ELRPDVIVLDLHMPEIGGMMVLERLRTELPSAKSIVMTATEKAEPLLDAIAAGAAGYLTK 105 Query: 114 HNSA---ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN------TLTQMEFTIMGYMV 164 S A++ G V ++ + Y + G LT E ++ + Sbjct: 106 RTSGEELRQAILTVHGGGSVIAPQLAPHLLQAYSRASTGEAPDVRKKLTATEHEVLRLVA 165 Query: 165 SGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 G QIAE L + R++ + RI ++ + R +V H Sbjct: 166 QGMTDRQIAERLFVSPRTVQNHLARIREKTSMRRRSDLAR-WAVLH 210 >UniRef50_B5YIR2 Response regulator UvrY n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIR2_THEYD Length = 213 Score = 94.0 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 81/201 (40%), Gaps = 34/201 (16%) Query: 42 EESSYFNRGVVEGILTKNHNAR-----------------LSGYIFVDFSVSFLRLFLEKD 84 ++ + F +G+ E +L + +F+D ++S + Sbjct: 11 DDHTLFRKGLKEILLDTPYIKECKEAKSGYEAIDILSKESFDIVFLDIAMSDINGIETLK 70 Query: 85 WIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNSA----ISAVIYNDDGLDV--- 130 I L ++L + R+++ A+ + ++ + AV G Sbjct: 71 KIKILYPETKILMLSMYPEEQYAIRSLKCGASGYLTKSADPEELLKAVDKIIKGGKYLPH 130 Query: 131 -ANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQR 189 +EK+ +I + L++ EF + + G + +I++ L + I+++ Y+ R Sbjct: 131 TFSEKLL-HYIDKSEDIPPHEKLSEREFQVFLMIAKGKSLIEISKELSISIKTVSTYRAR 189 Query: 190 IEKRMGGKINELFIRSHSVQH 210 I +++G + N I +++++H Sbjct: 190 ILEKLGLENNAEII-NYAIKH 209 >UniRef50_C4XNR8 NarL family two-component response regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XNR8_DESMR Length = 220 Score = 94.0 bits (232), Expect = 3e-18, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 59/163 (36%), Gaps = 18/163 (11%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV------SDRNMQSLANYWRKH---- 114 + + +D S+ + + +VL M + A + + Sbjct: 50 AEVLVLDLSMPRVSGLECIKELKSRGQEIKILVLTMHGREYVKEAMAAGALGYIEKQALD 109 Query: 115 NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN-------TLTQMEFTIMGYMVSGY 167 + A+ G + ++ + + LS T LT E ++ +V G+ Sbjct: 110 SELFVAIRTVASGRRYMSPDNAEVLLDQLLSPTPQAASPDPYAVLTAREREVLKLLVRGH 169 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 QIA +L + +++I +K + +++ + ++++H Sbjct: 170 TLTQIAGLLHLSVKTIDTHKTHVMEKLNLTHKSQLV-DYALRH 211 >UniRef50_Q13QW9 Two component transcriptional regulator, LuxR family n=5 Tax=Burkholderia RepID=Q13QW9_BURXL Length = 220 Score = 93.6 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 15/155 (9%) Query: 58 KNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD--------RNMQSLAN 109 + A + +D S+ + D +++ S R + + A Sbjct: 45 QRFCALRPDVVVMDVSLPGASGIEAMRRMLA-REPDARVLIFSVHEEAIFVRRALDAGAL 103 Query: 110 YWRKHNSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTG--GNTLTQMEFTIMGYM 163 + SA + AV + I Q R G G L+ EF ++ + Sbjct: 104 GYVTKASAPDVLVEAVRTIARRAGYLSPDISQALALRNAFSEGPPGRQLSAREFEVLRLL 163 Query: 164 VSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKI 198 V GY IAE L + +++ ++ I ++ G Sbjct: 164 VQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADN 198 >UniRef50_B1ZN14 Two component transcriptional regulator, LuxR family n=3 Tax=Verrucomicrobia RepID=B1ZN14_OPITP Length = 215 Score = 93.6 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 57/161 (35%), Gaps = 17/161 (10%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS--------DRNMQSLANYWRKHN 115 + +D + L I + M +++ S +++ A+ + + Sbjct: 47 KPDLLVLDAKLPGLNGVDLLRRISK-KLSGMRVLVFSGHENPVLIREMLEAGAHGFVEKT 105 Query: 116 SAI----SAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT---LTQMEFTIMGYMVSGYN 168 + + + G + L + + NT LT E I+ + ++ Sbjct: 106 AGLFEFKKGLETVASGGTYFGPAVAALLRNVVANPSASNTADFLTDREREILQLVAESHS 165 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 +IA L + I+++ ++ + +++ R ++++ Sbjct: 166 TKEIAAKLGISIKTVDNHRTNLMRKLNLHDVASLTR-YALE 205 >UniRef50_B9L1R6 Response regulator uvrY n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1R6_THERP Length = 221 Score = 93.6 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 55/161 (34%), Gaps = 19/161 (11%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN-------MQSLANYWRKH 114 +D S+ I L ++L +Q+ + + + Sbjct: 49 TLQPDVAVLDISMPG-NGLEALRRIASLGLPTRTLILTVHAEERYLLPVLQAGGSGYVRK 107 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYLS-------FTGGNTLTQMEFTIMGYM 163 +S + A+ G ++ + + YL L++ E ++ Sbjct: 108 SSLHTDLVEAIRLVARGEVFIDQAAARTLLQGYLDHARTGEVQDPAQLLSEREREVLRLT 167 Query: 164 VSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 +GY +IA+ L + +++ Y+ R+ +++G +R Sbjct: 168 AAGYTAQEIADQLFLSPKTVETYRHRVMQKLGFSRRSELVR 208 >UniRef50_Q01NC6 Two component transcriptional regulator, LuxR family n=3 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01NC6_SOLUE Length = 216 Score = 93.6 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 19/164 (11%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH-- 114 + +D ++ L I + L + +++ A + Sbjct: 49 TPDVVVMDVAMPGLNGIEAARQISAKLPHTAIVFLSMHSDESYVLKALKAGARAYLLKDS 108 Query: 115 --NSAISAVIYNDDGLDVANEKIRQ-------LFIGRYLSFTGGNTLTQMEFTIMGYMVS 165 + I+AVI +G + I + + LT E ++ + Sbjct: 109 AEHDLIAAVIAVSEGKAFFSPAISKMLVEDYMRQMQERQIEDSYELLTTREREVLQLLAE 168 Query: 166 GYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 G N ++A +L++ + ++ ++ I +++ I ++++ Sbjct: 169 GKNNKEVAAILNLSLYTVETHRGNILQKLNLHSGAELI-LYAIR 211 >UniRef50_Q3JFS6 DNA-binding response regulator, LuxR family n=92 Tax=Burkholderiales RepID=Q3JFS6_BURP1 Length = 282 Score = 93.6 bits (231), Expect = 4e-18, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 15/158 (9%) Query: 67 YIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKHNSA-- 117 + +D S+ I +VL + R ++ A+ + SA Sbjct: 117 VLVLDLSMPGRNGVELIKQIKEEKPALRILVLTMHAEQQYAVRAFRAGASGYLTKESASS 176 Query: 118 --ISAVIYNDDGLDVANEKIRQLFIG---RYLSFTGGNTLTQMEFTIMGYMVSGYNPYQI 172 + AV G + + + F + L+ EF + + SG QI Sbjct: 177 ELVGAVTKVASGGVYVSLAMAERFAQSLNEPAETLPHHRLSDREFDVFRRIASGQTLTQI 236 Query: 173 AEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 A+ L + +++ YK RI ++M +R ++++H Sbjct: 237 ADELCVSAKTVSTYKTRILEKMQMPHEAALVR-YALRH 273 >UniRef50_C7RKP7 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RKP7_9PROT Length = 216 Score = 93.2 bits (230), Expect = 4e-18, Method: Composition-based stats. Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 13/160 (8%) Query: 58 KNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANY 110 + + +D S+ I +V ++ +R +++ A Sbjct: 47 AQYQTLRPDTVVMDLSMEGFGGIEAIRRIRSRDPQAAILVYTVHNSRVLLERALEAGALG 106 Query: 111 WRKHNSAI----SAVIYNDDGLDVANEKIRQLFIGRYLSFTGG--NTLTQMEFTIMGYMV 164 + S I A+ + + + R+ G + LTQ EF + + Sbjct: 107 FVTKGSDIDTLLQAIKRIASRESFVSPDMLPALLDRHFPAGGVSFDRLTQREFQVFKLLS 166 Query: 165 SGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 G+ + A++L++ +++ + +I ++G R Sbjct: 167 EGHALPECADILNLSSKTVSNHFTQIRAKLGVDSPAEMAR 206 >UniRef50_C5T9P3 Two component transcriptional regulator, LuxR family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9P3_ACIDE Length = 239 Score = 93.2 bits (230), Expect = 5e-18, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 57/170 (33%), Gaps = 32/170 (18%) Query: 62 ARLSGYIFVDFSVSF---------------------LRLFLEKDWIDYLASTDMGIVLVS 100 A + D + L + + +++ S ++ Sbjct: 48 ALAPDIVLTDIRMPAASGIHLAAVFREQFPRVRVLVLSMHDDAEYVRRAVSLGARGYVLK 107 Query: 101 DRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIM 160 D Q L I A+ G + + QL +LT E +++ Sbjct: 108 DAPAQQL----------IEAIEAVHQGGCYFSPGLEQLLDDAGSVARSNRSLTPREASVL 157 Query: 161 GYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 ++ G + +IA ++ +R++ ++ + +++ + ++ ++V H Sbjct: 158 QWVSEGRSNKEIAALMGTSVRTVETHRLHLRRKLRIEGQAALMK-YAVDH 206 >UniRef50_Q46SR4 Two component transcriptional regulator, LuxR family n=14 Tax=Burkholderiales RepID=Q46SR4_RALEJ Length = 232 Score = 93.2 bits (230), Expect = 5e-18, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 20/180 (11%) Query: 49 RGVVEGILTKNHNA-------RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD 101 GV + N A + +D + + + + + I+++S Sbjct: 50 LGVTHVLEADNGQAAVEIVRQYAPDVVILDLDIPRINGLDVIPRLKAIQ-PGVRILVISG 108 Query: 102 --------RNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYL---SFTGGN 150 R Q+ AN + + ++ + + + + GR Sbjct: 109 QDQNTFAPRARQAGANGYVSKTQELPEIVRCVESVLAGYSVMPDVDGGRADGVDETRRLG 168 Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +L+ E IM + G + QI EVL + +++ +K RI +++G + I + +H Sbjct: 169 SLSDKELVIMQMLAKGMSNKQIGEVLFISNKTVSTHKTRIMEKLGARSLVDVI-DFARRH 227 >UniRef50_C7MN84 Response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MN84_CRYCD Length = 215 Score = 93.2 bits (230), Expect = 5e-18, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 16/133 (12%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 L +F E D++ Y ++ + + + L + A+ G + Sbjct: 82 LTMFEETDYLFYTLRGGAAGYVLKNSSTEVL----------LGAIRKVATGETYIEPNMA 131 Query: 137 QLFIGRYLSFTGG------NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRI 190 Q G+ +G + L+ EF I + GY + A+ L + ++++ ++ +I Sbjct: 132 QALSGKLHGQSGVAEKNPYHELSSREFEIFSLLAQGYTNKEAADKLFISVKTVETHRSKI 191 Query: 191 EKRMGGKINELFI 203 ++G + Sbjct: 192 YAKLGVNSRAELV 204 >UniRef50_Q5HLK6 Oxygen regulatory protein nreC n=71 Tax=Firmicutes RepID=NREC_STAEQ Length = 218 Score = 93.2 bits (230), Expect = 6e-18, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 64/177 (36%), Gaps = 43/177 (24%) Query: 65 SGYIFVDFSVSF----------------------LRLFLEKDWIDYLASTDMGIVLVSDR 102 + +D S+ L +F +++++ ++ + ++ + Sbjct: 47 PDVLILDLSMPPGESGLIATSKISESFPDTKILILTMFDDEEYLFHVLKSGAKGYILKNS 106 Query: 103 NMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN----------TL 152 + L I AV G + K+ + +++ + + L Sbjct: 107 PDEQL----------ILAVRTVYQGETYVDMKLTTSLVNEFVNQSQTDEVSSSSDPFKIL 156 Query: 153 TQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 ++ E I+ + GY IAE L + ++++ A+K I ++ K + ++++ Sbjct: 157 SKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVE-YALK 212 >UniRef50_B8FFJ9 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfobacteraceae RepID=B8FFJ9_DESAA Length = 212 Score = 92.8 bits (229), Expect = 6e-18, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 66/161 (40%), Gaps = 16/161 (9%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKHNSA 117 VD S+ + + ++L R +++ A + SA Sbjct: 48 PDVAVVDISMPGIDGLEVVSRLHAELPDLPMLILTMHEEEQYVVRAIEAGAMGYMTKKSA 107 Query: 118 ----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG----NTLTQMEFTIMGYMVSGYNP 169 ++A+ G E+ +L R ++ G ++L++ E ++ ++ SG+ Sbjct: 108 PEQLVTAIRKLHSGSRFLTEEAAELLALRVSRWSKGGSLLDSLSKRELQVLRHLASGHTN 167 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +IA+ + ++++ Y+ R+ K++ + N R ++Q+ Sbjct: 168 REIADSYHISVKTVDTYRARLLKKLNLRNNADISR-FAIQN 207 >UniRef50_C0QFU8 TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFU8_DESAH Length = 219 Score = 92.8 bits (229), Expect = 7e-18, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 20/167 (11%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN-------MQSLANYWRKH 114 + +D S+ L + ++L +++ A+ + Sbjct: 47 ELAPDVVLMDISMPELNGMDATRQLKKKYPDVKILILSMHSTEEYIFETLRAGASGYLIK 106 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFI--------GRYLSFTGGNTLTQMEFTIMGY 162 SA I A+ G + I + I G L G + L+ E ++ Sbjct: 107 RSAPTDLIKAIHAAHAGDCFLSPSISKKVIKNYVQQKQGLSLEPRGLDLLSAREREVLQL 166 Query: 163 MVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 + G+ +IA L + +++ A++ I+K++G + ++++ Sbjct: 167 IAEGHANREIAGHLYISPKTVEAHRNHIQKKLGLNGTAELTK-YAIR 212 >UniRef50_UPI00017452CB response regulator with a HTH DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017452CB Length = 235 Score = 92.8 bits (229), Expect = 7e-18, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 18/163 (11%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNS 116 + VD S+ L +V+ + R +++ A + ++ Sbjct: 64 KPDMLAVDISLPGRNGLELIKDALALHPDLPILVISMHDESFYAQRVLKAGARGYVMKDA 123 Query: 117 A----ISAVIYNDDGLDVANEKIRQL----FIGRYLSF--TGGNTLTQMEFTIMGYMVSG 166 + A+ +G + + F GR + G L+ EF + + G Sbjct: 124 ESTTLLQAIRNVLEGGRYVSPAMSAQIMEAFSGRGAARPVDGVQRLSDREFEVFQLISEG 183 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 + QI + L++ ++++ ++ I +++ + +R ++V+ Sbjct: 184 KSTQQIGDALNISVKTVEVHRAHIREKLKLEDGASVLR-YAVR 225 >UniRef50_B4DAD9 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAD9_9BACT Length = 237 Score = 92.8 bits (229), Expect = 7e-18, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 61/167 (36%), Gaps = 21/167 (12%) Query: 55 ILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSL 107 + K H + +D ++ + L + +V L ++R++++ Sbjct: 56 LFEKEH----PDLVVMDLNLPGRSGLDLVKDLLALEPSARVLVCSMHDEMLYAERSLRAG 111 Query: 108 ANYWRKHNSA----ISAVIYNDDGLDVANEKIRQLFIG------RYLSFTGGNTLTQMEF 157 A + + + ++A+ G +E++ + S + L+ EF Sbjct: 112 AKGYVTKDCSAALLLTAIRRVLGGNIHVSERLAVRVLEAFAGARPRGSHSPLEKLSDREF 171 Query: 158 TIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 + G +I L++ +++ ++ I+++M + IR Sbjct: 172 EVFVLFGEGKTAKEIGAKLNLSPKTVSVHRDHIKQKMEFGTSAEMIR 218 >UniRef50_A9FM25 DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FM25_SORC5 Length = 233 Score = 92.8 bits (229), Expect = 7e-18, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 48/157 (30%), Gaps = 16/157 (10%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKHNS 116 + VD ++ + +VL +++ A + S Sbjct: 67 KPDVVLVDLNIPDRDGIELLGALRAQLPQAKLLVLSGYDDEFRVAEALRAGAQGYLVKTS 126 Query: 117 A----ISAVIYNDDGLDVANEKIR-----QLFIGRYLSFTGGNTLTQMEFTIMGYMVSGY 167 I + G + I + G + LT E ++ + +G Sbjct: 127 KLEEVIEGIRRIATGGAPLSSSIAGAVVRAMRKPASEGSGGLDALTPRERQVLRLLAAGV 186 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 + + A L + +++ ++ RI ++G K R Sbjct: 187 STRETAARLTISPKTVETHRVRIYAKLGCKSAVELTR 223 >UniRef50_A1VB77 Two component transcriptional regulator, LuxR family n=5 Tax=Desulfovibrio RepID=A1VB77_DESVV Length = 216 Score = 92.8 bits (229), Expect = 7e-18, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 18/163 (11%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWRKHNSA 117 + +D ++ + I T + L + R + + A+ + N++ Sbjct: 49 PDIVLMDLTLPVMEGAEAIREIKRRRETTKVLALTAHKKDSLIYRTLSAGADGYLLKNAS 108 Query: 118 ----ISAVIYNDDGLDVANEKIRQLFI------GRYLSFTGGNTLTQMEFTIMGYMVSGY 167 A+ G + +I L I GR + + L+ E ++ + G+ Sbjct: 109 RDILFQAMQTVLAGRRYISPEISDLLIDDFLRHGRRDEASMLDLLSDREKQVLKLVAEGH 168 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +AE L + +++ +K +++++G + + +++H Sbjct: 169 GNKAVAEKLCISHKTVEKHKANLKRKLGTASTAELV-TFAIEH 210 >UniRef50_C5V4R9 Two component transcriptional regulator, LuxR family n=2 Tax=Proteobacteria RepID=C5V4R9_9PROT Length = 211 Score = 92.4 bits (228), Expect = 8e-18, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 56/161 (34%), Gaps = 15/161 (9%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNS 116 + +D S+ + I ++ ++ R +++ A + +S Sbjct: 48 TFDVLLLDLSMPGVTGMSLITQIKAQYPAFPILIFSMHNEAQIASRAIKAGAAGFIAKDS 107 Query: 117 A----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT---LTQMEFTIMGYMVSGYNP 169 + A+ G + + + + L L+ E I +V+G Sbjct: 108 DPEILLEAIRRVAAGRNYIDPALAEQMAFDALMPPKSAPHAILSSRELEIFALLVAGKRV 167 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 IA +L++ +++ +K + +M + ++++H Sbjct: 168 NDIAYILNISNKTVSTHKLNLITKMKLHSTADLV-HYALEH 207 >UniRef50_Q7NTU2 Probable transcriptional regulatory, LuxR family n=1 Tax=Chromobacterium violaceum RepID=Q7NTU2_CHRVO Length = 206 Score = 92.4 bits (228), Expect = 8e-18, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 68/172 (39%), Gaps = 14/172 (8%) Query: 42 EESSYFNRGV--VEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL- 98 + Y G E L H A +G I +D +S + + + + I+L Sbjct: 24 DGQGYRADGFDSGEAFLADGHGAEYNG-IILDLRLSGISGIVLLEKLAQWPYCPPVIMLT 82 Query: 99 --------VSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN 150 V+ + +L ++ K + + + + + ++ R +S Sbjct: 83 AHGDVPHAVAALKLGAL-DFIEKPFDDVHLLERAAAAVALDEQNRQRHGHQRKVSAA-LA 140 Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELF 202 LT+ E +M +++G QIAE L + ++++ ++ R+ ++MG K Sbjct: 141 LLTEREREVMQLILAGKLNKQIAEELSISMKTVEVHRSRVFEKMGVKSAVEL 192 >UniRef50_Q3Z8L1 DNA-binding response regulator, LuxR family n=6 Tax=Bacteria RepID=Q3Z8L1_DEHE1 Length = 224 Score = 92.4 bits (228), Expect = 8e-18, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 20/159 (12%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN-------MQSLANYWRKHN- 115 + +D ++ L I L T ++L + + +++ A + N Sbjct: 52 HPDVVVMDIAMPRLNGIEATKQIKQLLPTTAILILTAYESEQYILAILEAGAASFLLKNV 111 Query: 116 ---SAISAVIYNDDGLDVANEKIRQLFIGRYLSF-------TGGNTLTQMEFTIMGYMVS 165 + A+ G V + I + ++ + N LT E ++ Sbjct: 112 KGTQLLEAIRAVYAGESVLQPSTTRRVIDQLINKATKTEEVSAVNPLTDREIEVLKMAAR 171 Query: 166 GYNPYQIAEVLDMDIRSIYAYKQRIEKRM--GGKINELF 202 G + IA+ L + R+I + I K++ G + + Sbjct: 172 GVSNKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAIL 210 >UniRef50_C4SVX3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=3 Tax=Yersinia RepID=C4SVX3_YERFR Length = 218 Score = 92.4 bits (228), Expect = 9e-18, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 50/116 (43%), Gaps = 2/116 (1%) Query: 84 DWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLF-IGR 142 DW+ + +++++D L + + AVI + L ++ ++F Sbjct: 77 DWLR-IQRPHCRVIVIADEFCVYLLKQYFYGVEQVYAVIAQNAPLSQFVAQLNRVFSNSP 135 Query: 143 YLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKI 198 LS L++ E T++ ++ G + IA+ L + +++ +K+ ++G Sbjct: 136 ELSKKRPCILSKRERTVLALLLQGKSNNDIADHLQLSNKTVSYHKRSALGKLGINT 191 >UniRef50_B8GSX5 Response regulator receiver protein n=2 Tax=Ectothiorhodospiraceae RepID=B8GSX5_THISH Length = 220 Score = 92.4 bits (228), Expect = 9e-18, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 63/172 (36%), Gaps = 17/172 (9%) Query: 53 EGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN-------MQ 105 E ++ + +D ++ + + I + +VL + ++ Sbjct: 41 EALVEAKR--LKPDVVLMDINMPGIGGLVATRRIVEAQPSVKVLVLTAMDEGPVPRWVLE 98 Query: 106 SLANYWRKHN----SAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT---LTQMEFT 158 + A+ + I+A+ G + + Q L+ N L+ E Sbjct: 99 AGASGYLTKGCRIEEMIAAIQGAMQGERHISPAVAQRLALGGLAKGQANPFDELSGRERQ 158 Query: 159 IMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 I+ ++ G P IA L++ +++ YK R+ ++G + + + + QH Sbjct: 159 ILLMILQGQTPQAIATALNISPKTVSTYKCRVMGKLGISNDMQLV-TLAAQH 209 >UniRef50_P44845 Nitrate/nitrite response regulator protein homolog n=109 Tax=Gammaproteobacteria RepID=NARP_HAEIN Length = 208 Score = 92.4 bits (228), Expect = 9e-18, Method: Composition-based stats. Identities = 17/144 (11%), Positives = 52/144 (36%), Gaps = 11/144 (7%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN-------MQSLANYWRKHNS 116 I +D ++ L + ++L + + A+ + ++ Sbjct: 50 SPDVIILDLNMKGLSGLDTLKGLRAEGVDARILILTVSDAKNDIYTLIDAGADGYLLKDT 109 Query: 117 A----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQI 172 + + G + ++ I+ L + R ++LT E ++ + +G + QI Sbjct: 110 EPDTLLEQIKRIAQGEVILSDSIKNLLLERTHEDNPLDSLTDREMGVLRQIATGLSNKQI 169 Query: 173 AEVLDMDIRSIYAYKQRIEKRMGG 196 A L + ++ + + + +++ Sbjct: 170 AAQLFISEETVKVHIRNLLRKLNV 193 >UniRef50_Q1J0X7 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=Q1J0X7_DEIGD Length = 228 Score = 92.4 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 19/160 (11%) Query: 53 EGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN--------M 104 E IL + I +D S+ + I +GI++++ + + Sbjct: 51 EAILKARQ--LMPDVILMDVSMPGMNGIEATRAIKA-ERPGVGILVLTSYDDDAYVFALL 107 Query: 105 QSLANYWRKHNSA----ISAVIYNDDGLDV----ANEKIRQLFIGRYLSFTGGNTLTQME 156 ++ A + N++ + AV G K+ + F + L+ E Sbjct: 108 EAGAAGYLLKNASEDELLGAVRAVAAGESALHPAVARKVLERFSTHQTPTPPEDALSPRE 167 Query: 157 FTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 ++ +G +IA LD+ R++ + I ++G Sbjct: 168 LEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGV 207 >UniRef50_B1ZWL0 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=B1ZWL0_OPITP Length = 234 Score = 92.1 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 69/164 (42%), Gaps = 18/164 (10%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRKHN 115 VD ++ + L ++ L ++R +++ A + + Sbjct: 64 LSPDVALVDITLKTTSGIELMKHLKALRPEMPVLIMSMHDESLFAERALRAGAKGYIMKH 123 Query: 116 SA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTG------GNTLTQMEFTIMGYMVS 165 A ++A+ G ++K+++ + R ++ +TL+ E + + + Sbjct: 124 EASAKILTAIRRVLSGELYLSDKMKEKMLHRLVNNRKEEVVFSIDTLSDREMEVFQLIGN 183 Query: 166 GYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 GY QIA L++ +++I +Y++ ++ ++ + +R H++Q Sbjct: 184 GYGTRQIASKLNLSVKTIDSYREHLKLKLRLESGTELVR-HAIQ 226 >UniRef50_A0L9F1 Two component transcriptional regulator, LuxR family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9F1_MAGSM Length = 206 Score = 92.1 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 53/158 (33%), Gaps = 12/158 (7%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKH- 114 +D S+ L + ++L + + Q+ A + Sbjct: 46 LNPDVALLDISMPGLNGLDVVKRVVEEKRPTRLLLLTMHDDPTLAIKAEQAGALGYVVKD 105 Query: 115 ---NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQ 171 + + A++ G +E + + L+ E ++ + G + Sbjct: 106 NAFSELLDAILAVAAGKRFVSEVVAEKVNELERLDDLPVQLSPREKEVVRLVADGQTNKE 165 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 IA L + +++ ++ R+ +++ +R ++++ Sbjct: 166 IARSLGISPKTVDTHRTRLMRKLNLHTTADVVR-YAMR 202 >UniRef50_C7RBI1 Two component transcriptional regulator, LuxR family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBI1_KANKD Length = 212 Score = 92.1 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 16/139 (11%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 L + E++++ ++ L+ D + L I AV G ++ Sbjct: 81 LTMHEEQEYVIHMVRAGASGYLLKDSASEEL----------IDAVKALATGKTYYSQYAA 130 Query: 137 QLFIGRYLSFTGG-----NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 + +Y LTQ E + +V G IA LD+ +++ ++ ++ Sbjct: 131 SVLATQYSQPDKEWQDPYKNLTQREREVFHLVVDGKTTKDIARTLDISVKTAENHRGKVL 190 Query: 192 KRMGGKINELFIRSHSVQH 210 ++G +R ++ +H Sbjct: 191 DKLGVSNTAELVR-YAAKH 208 >UniRef50_B4CWX5 Two component transcriptional regulator, LuxR family n=3 Tax=Verrucomicrobia RepID=B4CWX5_9BACT Length = 210 Score = 91.7 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 47/144 (32%), Gaps = 15/144 (10%) Query: 64 LSGYIFVDFSVSFLRL-FLEKDWIDYLASTDMGIVLVSD------RNMQSLANYWRKHNS 116 + +D + D + + D R MQ+ A + ++ Sbjct: 52 HPDVVLMDLRLPGANGTAATADLRREWPDARVLMFTTFDGEEDIYRAMQAGARGYLLKSA 111 Query: 117 A----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQI 172 A +SA+ G + + Q GR + ++ E ++ + G +I Sbjct: 112 AREELLSAIRAVAAGERHLSAALAQRLAGRVAAPD----VSDREREVLQLIARGKANKEI 167 Query: 173 AEVLDMDIRSIYAYKQRIEKRMGG 196 A L + ++ + + +MG Sbjct: 168 AAALGISEETVKRHASNLFVKMGV 191 >UniRef50_Q60AR8 DNA binding response regulator, LuxR family n=1 Tax=Methylococcus capsulatus RepID=Q60AR8_METCA Length = 215 Score = 91.7 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 15/155 (9%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRKHNSA 117 I +D S+ + I ++ +V + R +++ A + + A Sbjct: 51 PDVIVMDLSLPGIGGLASIRRIRSRDTSARILVFSIHDELIYVVRALEAGARGYITKSCA 110 Query: 118 ----ISAVIYNDDGLDVANEKIRQLF----IGRYLSFTGGNTLTQMEFTIMGYMVSGYNP 169 + AV G +I Q +G + T NTL+ EF + + GY Sbjct: 111 PEILVEAVARIASGESFLEPEIAQRLAMQTLGGAEATTALNTLSAREFDVFLLLAKGYTT 170 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 ++AE L + +++ Y I+ ++G R Sbjct: 171 REVAEELRLGYKTVANYSTLIKSKLGVNTTAEMAR 205 >UniRef50_Q124P8 Two component transcriptional regulator, LuxR family n=6 Tax=Burkholderiales RepID=Q124P8_POLSJ Length = 229 Score = 91.7 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 52/150 (34%), Gaps = 9/150 (6%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLAS-------TDMGIVLVSDRNMQSLAN-YWRKHNSA 117 G I +D + + D + T G V + R +S A + K Sbjct: 72 GAIVLDVRMPGISGLTILDTLMAQGVDQPVIMLTGHGTVDMCRRAFKSGAAEFLEKPVDD 131 Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLD 177 + + + + + + L++ E ++G +V+G +I L Sbjct: 132 EQLLEALQNAVRQHVKSRERRQTDQQARQ-RYAQLSEREREVLGLIVAGLTNKEIGRALA 190 Query: 178 MDIRSIYAYKQRIEKRMGGKINELFIRSHS 207 + R++ ++ + ++ + IR ++ Sbjct: 191 VSPRTVETHRANLFAKLEAESLAQLIRQYA 220 >UniRef50_C0N6J7 Sigma-70, region 4 family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6J7_9GAMM Length = 168 Score = 91.7 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 60/162 (37%), Gaps = 14/162 (8%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRKH 114 + +D ++ + I ++ + + R MQ+ A + Sbjct: 4 ESYPDMVLLDITLPGVGGLEVLRRIRANREDAKVLMFSMHEDPVFASRAMQAGARGYITK 63 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLF--IGRYLSFTGGNTLTQMEFTIMGYMVSGYN 168 N+A + AV DG + + Q + + + L++ E I+ + G + Sbjct: 64 NNAADHLVEAVEKVLDGKIYLSPDMAQQLAMLNIDAGTSALSDLSRRELEILRLLGEGKS 123 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +I++VL + +++ +I+ ++ +R ++ H Sbjct: 124 MNEISDVLGISYKTVANNLTQIKSKLDISKTAELMR-FAISH 164 >UniRef50_Q1LEP5 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderiaceae RepID=Q1LEP5_RALME Length = 214 Score = 91.3 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 14/161 (8%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKH 114 I +D S+ + +VL R ++ A + Sbjct: 45 ELSPHVILLDLSMPGRNGLELIRQLRTDHPALRILVLTMHAEEQYVVRAFRAGAAGYLTK 104 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIG--RYLSFTGGNTLTQMEFTIMGYMVSGYN 168 SA + A+ G + + + + L+ E + +V G + Sbjct: 105 ESAATELVEALRKVAAGGTYVSPAMAEKLALGLQEKPDAPHEGLSDRELEVFRRIVDGES 164 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 QIA L + +++ YK R+ +++ + + +R ++++ Sbjct: 165 LTQIAAALCVSAKTVSTYKMRLMEKLQLRSDAALVR-YAIE 204 >UniRef50_A3D3Y4 Two component transcriptional regulator, LuxR family n=46 Tax=Proteobacteria RepID=A3D3Y4_SHEB5 Length = 214 Score = 91.3 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 62/182 (34%), Gaps = 16/182 (8%) Query: 36 CFCMWPEESSYFNRGVVEGILTKNHN-ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDM 94 C +PE + V +G+ +F+D + + F + M Sbjct: 27 CLAPYPELN--LIGSVEDGLAVYEKCLKLRPDLVFMDLKLPGMGGFDVIRQLRQRWPEMM 84 Query: 95 GIVLVSD-------RNMQSLANYWRKHNSA----ISAVIYNDDGLDVANEKIRQLFIGRY 143 I+L + + AN + S ++A+ G + + + + I Sbjct: 85 IIMLTATVEEKSAREALDVGANGYVLKYSPKSTLLAAIKCVCKGKNFIDPSLDERQIAAL 144 Query: 144 LSFTGGN--TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINEL 201 G+ LT E ++ + G IAE L + ++++ ++ + +++ Sbjct: 145 SGVVDGDMPLLTPREQQVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAE 204 Query: 202 FI 203 + Sbjct: 205 LM 206 >UniRef50_Q2RMH6 Two component transcriptional regulator, LuxR family n=8 Tax=Bacteria RepID=Q2RMH6_MOOTA Length = 221 Score = 91.3 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 17/142 (11%), Positives = 54/142 (38%), Gaps = 19/142 (13%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDV------ 130 L ++ +++ + + ++ ++ L +A+ G Sbjct: 83 LSMYDDEELVFRALESGARGYVLKRAGIEELT----------TAIRLVARGEAYLDPQIA 132 Query: 131 --ANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQ 188 E +++ S G LT+ E ++ G +IA L + ++++ A++ Sbjct: 133 RRVIEGLQERLPFTRASRPEGPELTERELEVLRLAAEGLTNAEIARRLVISVKTVQAHRA 192 Query: 189 RIEKRMGGKINELFIRSHSVQH 210 I +++G ++ +++++ Sbjct: 193 NIMQKLGLHDRVDLVK-YAIKN 213 >UniRef50_Q67MG8 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67MG8_SYMTH Length = 197 Score = 91.3 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 58/168 (34%), Gaps = 20/168 (11%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKH 114 A + +D S+ + I I L +++ A+ + Sbjct: 26 ALKPDVVIMDISLPDMSGIEATRLIKEAVPETRVIGLTMHEEEPFVLEFLRAGADAYIVK 85 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYLS--------FTGGNTLTQMEFTIMGY 162 SA + A+ +G V + + + + Y+S LT E I+ Sbjct: 86 RSAAADLVGAIRAVMEGQAVLDPAVTRAVVEGYVSRPGRAVGQPEEPCPLTPREREILVL 145 Query: 163 MVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 + G +IA L + +++ ++ + ++G +R ++++ Sbjct: 146 IAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGIHDRTELVR-YAIRQ 192 >UniRef50_A1ZEE6 Two-component response regulator n=2 Tax=Microscilla marina ATCC 23134 RepID=A1ZEE6_9SPHI Length = 213 Score = 91.3 bits (225), Expect = 2e-17, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 17/157 (10%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKH--- 114 + D ++ + + I I+L + + A+ + Sbjct: 49 PDIVLCDINLPGMDGLALTEKIKQKYPDQKIIILTMHQKEFYVLKAFDAGADGYFHKDTE 108 Query: 115 -NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG------NTLTQMEFTIMGYMVSGY 167 + I + +G + + Q+ I R L TLT E ++ +V+G Sbjct: 109 ESELIMGIKKIYNGQKYFCQSVSQILINRLLDTKNSSGKTLLPTLTFREKEVLEQVVAGL 168 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 +I + L + R++ ++ I ++ G K ++ Sbjct: 169 GNREIGDKLCISTRTVENHRANILRKFGLKNTVELVK 205 >UniRef50_Q2IIQ2 Two component transcriptional regulator, LuxR family n=3 Tax=Anaeromyxobacter RepID=Q2IIQ2_ANADE Length = 210 Score = 90.9 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 54/137 (39%), Gaps = 14/137 (10%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 L ++ ++ ++ L +R + L I A+ G + + Sbjct: 81 LSMYGDRQFVIQALRAGASAYLTKERAPEEL----------IRAIRSVLAGRRYVGDDLA 130 Query: 137 QLFIGRYL---SFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKR 193 + + + L+ E I + + + +IAE L + ++++ Y+ RI ++ Sbjct: 131 EQLADHLAGGGTGSPHERLSPRELEIFLQLAAARSVSEIAERLQLSVKTVSTYRGRILEK 190 Query: 194 MGGKINELFIRSHSVQH 210 M + N ++ ++V+H Sbjct: 191 MALRSNAELMQ-YAVRH 206 >UniRef50_Q3Z7M1 DNA-binding response regulator, LuxR family n=7 Tax=Bacteria RepID=Q3Z7M1_DEHE1 Length = 232 Score = 90.9 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 4/133 (3%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 L ++ + ++ ++ D + L R A+ Y L + Sbjct: 81 LSMYGNEAYVHEALRAGARAYVLKDSTSEELVRSVR---EAVQGHRYLSSPLSEKAIEAY 137 Query: 137 QLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 S TLT E ++ + G+ +IAE L + R++ ++ + +++ Sbjct: 138 MEKSAEATSLDPYETLTIREREVLHLVAQGHTCAEIAERLFISPRTVEVHRANMMRKLDL 197 Query: 197 KINELFIRSHSVQ 209 + +R +++Q Sbjct: 198 RNQTQLLR-YALQ 209 >UniRef50_B1ZP37 Two component transcriptional regulator, LuxR family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZP37_OPITP Length = 246 Score = 90.9 bits (224), Expect = 3e-17, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 55/167 (32%), Gaps = 22/167 (13%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH 114 + +D ++ + + + + +VL + R +++ A + Sbjct: 48 ELRPDVMVLDLNLPDGNGWTLVEQLKAADALPPTLVLSVCDEQLYARRLLRAGAGGYLMK 107 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT-----------LTQMEFTI 159 + + A+ +G +A+ I + L L+ E I Sbjct: 108 DEPMETILRAIREVREGRIIASATITNSLLSEALGMREDEPPAEAHDGNLAELSDRELQI 167 Query: 160 MGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSH 206 + G +IA L + +++ YK R+ ++G + I + Sbjct: 168 FALLGRGLRNKEIAARLRLSEKTVATYKVRLMSKLGVRTTPALIEHY 214 >UniRef50_Q12FM5 Two component transcriptional regulator, LuxR family n=3 Tax=Burkholderiales RepID=Q12FM5_POLSJ Length = 224 Score = 90.5 bits (223), Expect = 3e-17, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 63/162 (38%), Gaps = 19/162 (11%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS--------DRNMQSLANYWRKHNS 116 +D S++ + + ++ +S +R +++ AN + Sbjct: 60 PALAIIDISLNGESGLELIKTLRR-RYPGLALLAISMHDESVFAERALRAGANGYLMKKE 118 Query: 117 A----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT-----LTQMEFTIMGYMVSGY 167 A + AV G + + R L+ G L++ EF I+ + G+ Sbjct: 119 ATGNILLAVRRVLAGDIYLSAAMHSRLSQRLLAPQAGAPSPIAGLSEREFEILHLLGLGF 178 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 Q+A+ L+ I++I ++ +++++ K +R ++Q Sbjct: 179 GTRQVADKLNRSIKTIETHRASLKEKLQLKSGADLVR-FAIQ 219 >UniRef50_C9P7K7 Two component transcriptional regulator LuxR family n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P7K7_VIBME Length = 209 Score = 90.5 bits (223), Expect = 4e-17, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 13/146 (8%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS-------DRNMQSLANYWRKHNS 116 + +D + L ++ + + +VL + +R + S A+ + N+ Sbjct: 49 KPNILLLDIGIPMLDGLEVIKRLENIDNPPKVLVLTAQPSNFYANRALLSGASGFLSKNA 108 Query: 117 AISAVIYN----DDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQI 172 IS VI G + + F + + L+ E T+ Y+VSG +I Sbjct: 109 DISYVIEALKAISSGYKYFPDSLN--FKQQIEKDNDLSILSPRELTVFNYLVSGMPNKEI 166 Query: 173 AEVLDMDIRSIYAYKQRIEKRMGGKI 198 A+ + + ++I YK RI +++ K Sbjct: 167 AKEMILSSKTISTYKNRILEKLNAKN 192 >UniRef50_Q46VQ7 Regulatory protein, LuxR:Response regulator receiver n=32 Tax=Betaproteobacteria RepID=Q46VQ7_RALEJ Length = 231 Score = 90.5 bits (223), Expect = 4e-17, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 53/134 (39%), Gaps = 11/134 (8%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 + + ++ ++ D L ++A+ G + +I Sbjct: 102 VSMHDNLEYARQAVRAGARGYVLKDAPADEL----------MAAIEAVLAGRVFYSARIA 151 Query: 137 QLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 + + + + LT+ E I+G + G +IA L + +R++ ++ +++++G Sbjct: 152 RGMAEQMPATGPLDALTRRERDILGCIGRGMANKEIATQLGVSVRTVETHRLNLKRKLGI 211 Query: 197 KINELFIRSHSVQH 210 + ++ ++V+ Sbjct: 212 EGRAGLVK-YAVEQ 224 >UniRef50_C7LXA3 Two component transcriptional regulator, LuxR family n=4 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LXA3_DESBD Length = 222 Score = 90.1 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 54/159 (33%), Gaps = 18/159 (11%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDR-------NMQSLANYWRKHN 115 + +D + + I +A +VL S ++ AN + Sbjct: 47 NHPDIVLLDLQLPDISGIEVLRHIKRIAPEIPVVVLTSHEENELLFEALEWGANCYVLKG 106 Query: 116 SA----ISAVIYNDDGLDVANEKIRQLF-------IGRYLSFTGGNTLTQMEFTIMGYMV 164 + + + Y + K+ +L + S LT E I+ ++ Sbjct: 107 AGPEELLLGIHYALLNEMFVSPKLAKLIVEAYLFVNRQRKSLPPLADLTVREKEIVRLVI 166 Query: 165 SGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 G +IA+ L + +++++ ++ I +++G Sbjct: 167 DGKKSKEIADTLFISVKTVHKHRSNILEKLGLNNLADLR 205 >UniRef50_C7Q6M6 Two component transcriptional regulator, LuxR family n=89 Tax=Bacteria RepID=C7Q6M6_CATAD Length = 225 Score = 90.1 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 21/167 (12%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS--DRNM-----QSLANYWRKH 114 I +D + + + + ST +V+ S DR M ++ A + Sbjct: 51 ELEPDVILLDLVMPGVDGVGAMELLREAGSTARVLVVTSFTDRRMIIPAIRAGARGYVYK 110 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLF-----IGRYLSFTGGNTLTQMEFTIMGYMVS 165 + +AV G + ++ G LT E ++ + Sbjct: 111 DVDPAALAAAVRSVHAGHVLLEPEVATALLDSGSNGAADQGPQAPALTAREREVLVLIAQ 170 Query: 166 GYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG--KINELFIRSHSVQH 210 G +IA L + +++ + I ++G + +V+H Sbjct: 171 GRANREIARALVLAEKTVKTHVSNILMKLGVADRTQAAL---WAVRH 214 >UniRef50_C7QHJ1 Two component transcriptional regulator, LuxR family n=29 Tax=Actinobacteria (class) RepID=C7QHJ1_CATAD Length = 222 Score = 90.1 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 49/155 (31%), Gaps = 16/155 (10%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDR-------NMQSLANYWRKHNSA 117 + +D + + + +VL + +++ A + ++ Sbjct: 58 PDVVLMDLRMPTMGGVEAIRRLRVEQPAVRVLVLTTYDTESDVLPAIEAGATGYLLKDAP 117 Query: 118 ----ISAVIYNDDGLDVANEKIRQLFIGRYLSF-----TGGNTLTQMEFTIMGYMVSGYN 168 I AV G V + Q + R + G+ LT+ E ++ + SG Sbjct: 118 REDLIRAVRAAAAGQPVLAPTVAQRLMTRVQTPLAEPAPPGDALTERELEVLRLVASGTT 177 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 + A L + ++ + + G + + Sbjct: 178 NRETARKLFISEATVKTHLLHAYAKFGVRDRAAAV 212 >UniRef50_Q3JAH3 Two component transcriptional regulator, LuxR family n=2 Tax=Nitrosococcus oceani RepID=Q3JAH3_NITOC Length = 201 Score = 90.1 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 58/149 (38%), Gaps = 10/149 (6%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWID-------YLASTDMGIVLVSDRNMQSLANYWRKHNS 116 L+G + +D + + F ++ + + T V ++ R M+ A + + Sbjct: 48 LTGCLLLDVRMPGIDGFELQNILQLRGIHLSIIMITGHADVPMAVRAMKLGAKDFIEK-- 105 Query: 117 AISAVIYNDDGLDVANEKI-RQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEV 175 A D + +E+ ++ F + +LT+ E + + G IA Sbjct: 106 PFRAQTLLDRLHKILSEETPKKQFHSQPEKLAQLESLTRRERQVFKLLAQGKMNKHIAAE 165 Query: 176 LDMDIRSIYAYKQRIEKRMGGKINELFIR 204 L + IR++ ++ I +++ + +R Sbjct: 166 LCISIRTVETHRANIMEKLKVRSLADIVR 194 >UniRef50_Q07JN9 Two component transcriptional regulator, LuxR family n=8 Tax=Alphaproteobacteria RepID=Q07JN9_RHOP5 Length = 210 Score = 90.1 bits (222), Expect = 5e-17, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 54/153 (35%), Gaps = 10/153 (6%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDY-------LASTDMGIVLVSDRNMQSLA-NYWRK 113 R I +D + + + + G + ++ +++ A ++ K Sbjct: 49 TRCPACILLDVHIPGRSGLDILEELHAEDYPAPIFMISGKGDIAMAVNAIKNGALDFIEK 108 Query: 114 HNSAISAVIYNDDGLDVANEKIRQLFIGR--YLSFTGGNTLTQMEFTIMGYMVSGYNPYQ 171 V ++ ++ + Q + L+F G LT E ++ SG + Sbjct: 109 PFRGSEIVTRVEEAIEAFTRRRAQGLAPKVPSLNFPGREPLTMREREVLDLFSSGNTNKE 168 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 L + R+I ++ I K++G K +R Sbjct: 169 AGRQLGISPRTIEYHRANIMKKLGAKNATDLVR 201 >UniRef50_A1SGL7 Response regulator receiver n=1 Tax=Nocardioides sp. JS614 RepID=A1SGL7_NOCSJ Length = 213 Score = 89.7 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 18/148 (12%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWRKHNSA 117 + +D + I + I+L ++S A+ + +S+ Sbjct: 45 PDVVLLDIRMPKRSGIEACLAIKEAVPSAKIIMLTVSDEEADLYEAVKSGASGYLLKDSS 104 Query: 118 I----SAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT-------LTQMEFTIMGYMVSG 166 I AV DG + + + I + + LT+ E ++ + G Sbjct: 105 IEEVAQAVRVVADGQSLISPSMAVKLIDEFKQMSRPERDHVPGLRLTERELEVLRLVAKG 164 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 N +IA+ L + ++ + + I +++ Sbjct: 165 MNNREIAKELFISENTVKNHVRNILEKL 192 >UniRef50_Q1ASU8 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteria RepID=Q1ASU8_RUBXD Length = 207 Score = 89.7 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 16/151 (10%), Positives = 40/151 (26%), Gaps = 12/151 (7%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS------DRNMQSLANYWRKH-- 114 + +D + + L +V + ++ A Sbjct: 48 LRPDVVLLDLEMPGTGGVEVLRRLRGLDDPPKVVVFTAYDDERLLEALREGARGCLLKGA 107 Query: 115 --NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQI 172 AV G V +I + LT E ++ + G ++ Sbjct: 108 SRTEIFDAVRTVHAGGSVIPPEITARVL--KEMRGESEPLTPRELEVLRLVARGLTNREV 165 Query: 173 AEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 A L + R++ + + ++ + + Sbjct: 166 ARALFISERTVKFHVSSLLAKLRAENRTQAV 196 >UniRef50_B9XL75 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XL75_9BACT Length = 234 Score = 89.7 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 55/141 (39%), Gaps = 18/141 (12%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 L + KD++ + + ++ D + L + A+ G + I Sbjct: 98 LSIHTNKDYVLQIIKSGAQGYVLKDAPLTEL----------VRAIESVHGGGAFFSPDIS 147 Query: 137 QLFIGRYLSFT-------GGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQR 189 Q+ + +YL+ LT E ++ + G + ++A + + +R++ +++R Sbjct: 148 QIMLDQYLAEATNGEESGNSKKLTNRETEVLSMIAEGQSNKEMASRMGVGVRTVETHRER 207 Query: 190 IEKRMGGKINELFIRSHSVQH 210 + ++ + +++ H Sbjct: 208 VMNKLDIHNVAGLTK-YAIAH 227 >UniRef50_Q1H354 Two component transcriptional regulator, LuxR family n=4 Tax=Proteobacteria RepID=Q1H354_METFK Length = 213 Score = 89.7 bits (221), Expect = 5e-17, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 57/159 (35%), Gaps = 14/159 (8%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKHNSA 117 I +D S+ + I I+ + + + + A + + A Sbjct: 51 PDVIVMDMSMPGMGGLEALRRIIARYPQARVIIFSMHENAAFASQALGAGARAYVAKSGA 110 Query: 118 ----ISAVIYNDDGLDVANEKIRQLFIGR--YLSFTGGNTLTQMEFTIMGYMVSGYNPYQ 171 + AV G + I Q + S L+ EF + + +G + Sbjct: 111 ADDLVQAVREVAQGKGYLSPGIAQQIALQTLSGSDDPTRLLSAREFEVFRLLAAGKGVEE 170 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 I+ +L + +++ Y+ +++++G +R +++H Sbjct: 171 ISTILKISQKTVANYQTLLKQKLGITSPIELVRL-AIKH 208 >UniRef50_Q47DK2 Two component transcriptional regulator, LuxR family n=1 Tax=Dechloromonas aromatica RCB RepID=Q47DK2_DECAR Length = 211 Score = 89.7 bits (221), Expect = 6e-17, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 14/160 (8%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS-DRN------MQSLANYWRKH- 114 + +D ++ I +VL S DR + + N + Sbjct: 48 LQPDVVLLDIAMPGPSGIEVARTIRQFDPNTKILVLSSVDRPEIIEQALAAGVNGYLLKD 107 Query: 115 ---NSAISAVIYNDDGLDVANEKIRQ--LFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNP 169 + A+ G + KIR+ F + G LT + I+ + SG Sbjct: 108 FVLAELLQALEMVLHGERFLSPKIREMSRFSDAEGTSGSGTQLTARQTEILRLVASGRTT 167 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 +IA L + +++ ++ R+ +R+G R ++Q Sbjct: 168 KEIARDLGISPKTVEFHRSRLMERIGVHDVTGLTR-FALQ 206 >UniRef50_B8FDP3 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDP3_DESAA Length = 219 Score = 89.7 bits (221), Expect = 6e-17, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 48/148 (32%), Gaps = 17/148 (11%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDR-------NMQSLANYWRKHNS 116 I +D S+ + + +V+ ++ A+ + Sbjct: 51 KPDLILLDLSMPKMNGLATMRQLKKERPEVKILVITMHASQDYLIPALKEGADGYLLKGD 110 Query: 117 AIS----AVIYNDDGLDVANEKIRQLFIGRYLSFTGGN------TLTQMEFTIMGYMVSG 166 A+ DG + + I ++ +LTQ E + + G Sbjct: 111 DPQELFMAIRAIMDGKAYLSSDLSGQLIHSVINPDTREAADPLASLTQREKEVFQLVAEG 170 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRM 194 QIA++L + +++ ++ + K++ Sbjct: 171 NTNQQIADLLFISPKTVDKHRTNLMKKL 198 >UniRef50_C6VTJ6 Two component transcriptional regulator, LuxR family n=2 Tax=Sphingobacteriales RepID=C6VTJ6_DYAFD Length = 207 Score = 89.7 bits (221), Expect = 6e-17, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 56/155 (36%), Gaps = 12/155 (7%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNSA 117 + +D ++ + + + L V +QS A+ + N+ Sbjct: 47 PEVMLMDINLPDISGVTLCQQVKQAHPEIRVVALSIHNERSVIMSMLQSGASGYVLKNAI 106 Query: 118 ----ISAVIYNDDGLDVANEKIRQLFIGRYLS-FTGGNTLTQMEFTIMGYMVSGYNPYQI 172 ++A+ +G + ++ + LT+ E I+ + GY QI Sbjct: 107 GDDIVAALQAAMEGQIYLCAETQKALNEAPGTEPKEIPRLTRREKEILELIGQGYTTQQI 166 Query: 173 AEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHS 207 A L + ++ ++++ ++++ G +R + Sbjct: 167 AAELFISTHTVESHRKNLKEKFGVPNTATVVRMAA 201 >UniRef50_B1T1G9 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T1G9_9BURK Length = 204 Score = 89.4 bits (220), Expect = 8e-17, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 12/148 (8%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRKH 114 + VD + + + +T +V L + R + AN + Sbjct: 44 ELKPDLLIVDIDLDGMDGIDLIQRVRIKDATVKILVFSGYSAELFALRCHAAGANGYVNK 103 Query: 115 NSAISAVIYND----DGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 + ++ V+ G I + G L++ E T++ Y+ G + Sbjct: 104 SEDVTHVLSAANAVLAGFHCFPLDINAMASG-SGPHAAFAMLSERELTVLRYLAKGLSNK 162 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKI 198 +I + L + ++I +K I ++G Sbjct: 163 EIGDSLSLSNKTISTHKANILAKLGFTN 190 >UniRef50_C1XWT0 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=C1XWT0_9DEIN Length = 206 Score = 89.4 bits (220), Expect = 8e-17, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 59/162 (36%), Gaps = 17/162 (10%) Query: 49 RGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV--------S 100 R EGI H + + +D + + + + +V++ Sbjct: 34 RSAEEGIEQLAH--TSADVVLMDIGLPGMDGIEATKLVKE--RFGVRVVVLTVHQLEAEV 89 Query: 101 DRNMQSLANYWRKHNSA----ISAVIYNDDGLDVANEKIRQLFIGR-YLSFTGGNTLTQM 155 M + A+ + ++ + A+ G + +I + +G+ + G L+ Sbjct: 90 LAAMTAGADAYCLKSTDPASLLLAIRAAAIGSTYLDPQIAHIVLGQLSVLSGGQAQLSPR 149 Query: 156 EFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 E ++ + G + +IA+ L + + ++ + + + ++ Sbjct: 150 ELEVLRLIAEGLSNKEIAQRLGISLSTVKTHIEELLAKLSAS 191 >UniRef50_Q391P2 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia sp. 383 RepID=Q391P2_BURS3 Length = 216 Score = 89.0 bits (219), Expect = 8e-17, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 4/94 (4%) Query: 116 SAISAVIYNDDGLDVANEKIRQLFIGRYLSFT-GGNTLTQMEFTIMGYMVSGYNPYQIAE 174 S + V Y + + + G+ T L+ E I+ + G QIAE Sbjct: 118 SVLRGVPYFP---PEVQQNLLRRARGQAAKPTTPLAALSPREIEILRMIGEGLTKQQIAE 174 Query: 175 VLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSV 208 + ++ A++ I++++G N IR ++ Sbjct: 175 RIGHSANTVEAHRTNIKRKLGLDNNAELIRFSAL 208 >UniRef50_C6DD36 Two component transcriptional regulator, LuxR family n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PC1 RepID=C6DD36_PECCP Length = 218 Score = 89.0 bits (219), Expect = 9e-17, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 47/156 (30%), Gaps = 12/156 (7%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKH---- 114 +D ++ + I+L + + A + Sbjct: 58 DVAVIDIAMPDESGLSLLTRLRQQRPQFRAIILSIYDTTAFVQSALDAGAGGYLTKRCGP 117 Query: 115 NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAE 174 + AV G + LT E I +++G + IAE Sbjct: 118 EELVQAVRVVSSGGIYLCADALHAIRHQQQPPKELLALTPREREIFSLLINGISVKSIAE 177 Query: 175 VLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 L++ ++++ ++ I ++ + + ++QH Sbjct: 178 QLELSHKTVHVHRANILSKLQCESTVELV-HFALQH 212 >UniRef50_C6C961 Two component transcriptional regulator, LuxR family n=24 Tax=Gammaproteobacteria RepID=C6C961_DICDC Length = 211 Score = 89.0 bits (219), Expect = 9e-17, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 48/164 (29%), Gaps = 12/164 (7%) Query: 58 KNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANY 110 + +D ++ + T I+L + + A Sbjct: 43 VSLLKLNVDVAVMDIAMPDESGLSLLARLRQKRPTFRAIILSIYDTAAFVQSALDAGACG 102 Query: 111 WRKH----NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSG 166 + + AV G + LT E I +V+G Sbjct: 103 YLTKRCGPEELVQAVRAVHAGGSYLCADAMRALRHSRQRPKALEALTPREREIFDLLVNG 162 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 + IAE LD+ ++++ ++ + ++ + ++QH Sbjct: 163 LSVKTIAEQLDLSHKTVHVHRANVLDKLHCATTVELV-HFALQH 205 >UniRef50_A1WBJ7 Two component transcriptional regulator, LuxR family n=30 Tax=root RepID=A1WBJ7_ACISJ Length = 239 Score = 89.0 bits (219), Expect = 9e-17, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 57/160 (35%), Gaps = 17/160 (10%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLA---------NYWRKHNS 116 + +D S+ + + DMGI+++S + A Y K Sbjct: 78 DVLVMDLSMPGQSGLDALAMLRA-KAPDMGILILSGYPEEHYAINLIRQGASGYLNKECE 136 Query: 117 A---ISAVIYNDDGLDVANEKIRQLFIGRYLSFT---GGNTLTQMEFTIMGYMVSGYNPY 170 + A+ G + L + L++ EF + + G Sbjct: 137 PKEIVEAIRTIALGRRYLTPSVADLLAQQLNRKDDAPPHEQLSEREFQVFLKLAKGETAG 196 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 IA+ L + ++++ Y+ R+ ++MG N +++++ Sbjct: 197 DIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTY-YALKN 235 >UniRef50_B8ET67 Two component transcriptional regulator, LuxR family n=12 Tax=Proteobacteria RepID=B8ET67_METSB Length = 223 Score = 89.0 bits (219), Expect = 9e-17, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 52/153 (33%), Gaps = 13/153 (8%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKHNS 116 + +D ++ L I +V + + +++ A + +S Sbjct: 50 KPDLVIMDLTMPGLGGVEAVKRIRQWDPAARILVFTMHQNAAFAVQAIRAGAKGYVTKSS 109 Query: 117 A----ISAVIYNDDGLDVANEKIRQLFIGRYLS--FTGGNTLTQMEFTIMGYMVSGYNPY 170 I G + I ++ T + LT EF I+ +++ + Sbjct: 110 PPEALIRGAFDVLQGRIALSADIDHELALSRVTETPTATDVLTPREFEILRLLLAEKSTE 169 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 IA +L + +++ + I+ ++G + + Sbjct: 170 AIAAILGLSPKTVANTRYLIKAKLGVASDIELV 202 >UniRef50_B4D6Y1 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y1_9BACT Length = 220 Score = 89.0 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 55/166 (33%), Gaps = 19/166 (11%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWID-YLASTDMGIVLVSD------RNMQSLANYWRKHN 115 + +D S+ L I + + M ++ + + + + + Sbjct: 51 LAPDIVILDLSMPELNGLEAARRIAAHCPRSRMLMLTMHETEQFVREALAAGVRGYILKT 110 Query: 116 SAIS----AVIYNDDGLDVANEKIRQLF-------IGRYLSFTGGNTLTQMEFTIMGYMV 164 A AV G ++ +GR LT E I+ + Sbjct: 111 DAGRDLANAVDALIRGETFFASRLAATIYAAEFAGMGRRRRSKSQAGLTPREREILQLLA 170 Query: 165 SGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 G + + L++ +++ ++ RI ++G +R +++++ Sbjct: 171 EGRKNRDVGKALNISVKTAETHRARIMAKLGIDSVADLVR-YAIRN 215 >UniRef50_C0N7Q7 Sigma-70, region 4 family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N7Q7_9GAMM Length = 226 Score = 89.0 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 13/159 (8%) Query: 59 NHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYW 111 + + +D S+ + I + +V + + ++ A + Sbjct: 45 QYKKYQPDIVVMDISLPGQSGLKAIERIRQFDAKAKILVFSMHQNPSFALQATRAGALGY 104 Query: 112 RKHNSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG--NTLTQMEFTIMGYMVS 165 +S I A+ + I Q L + LT EF I+ +V Sbjct: 105 ITKSSDPEDLIRAIAEVAKNKHTLSADIAQALAMEKLGQEQSALDELTVREFEILRLLVD 164 Query: 166 GYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 + IAE+L++ +++ I+K++G + R Sbjct: 165 AKSNQDIAELLNISPKTVSNSHYIIKKKLGVSSDIELTR 203 >UniRef50_Q4KCH2 DNA-binding response regulator, LuxR family n=1 Tax=Pseudomonas fluorescens Pf-5 RepID=Q4KCH2_PSEF5 Length = 208 Score = 89.0 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 50/154 (32%), Gaps = 13/154 (8%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWRKHN 115 + +D S+ + I +V + R +Q+ A+ + N Sbjct: 46 LRPDIVILDVSLEKMDGLTVLKRIAQANLDVRVLVFTAQSVDTYAMRCLQAGASGFVSKN 105 Query: 116 SAI----SAVIYNDDGLDVANEKIRQLFIGRYLSFTGG--NTLTQMEFTIMGYMVSGYNP 169 + AV +G +K G + LT E ++ + G Sbjct: 106 EPLTKLLKAVDTIVEGYVFFPKKSMPFSDGGRGKHSSDVLAALTNRELEVLKLLAEGLTN 165 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 +IAE L + +++ +K I ++G + Sbjct: 166 LEIAEKLHLSNKTVSGHKINILSKLGVTSVVDLV 199 >UniRef50_D0J8D6 Two component transcriptional regulator, LuxR n=2 Tax=Comamonadaceae RepID=D0J8D6_COMTE Length = 208 Score = 89.0 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 47/150 (31%), Gaps = 9/150 (6%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLAS-------TDMGIVLVSDRNMQSLAN-YWRKHNSA 117 G I +D + D + T G V + R ++ A + K Sbjct: 52 GAIVLDVRMPGTSGLAVLDRLVAQGVDQPVIMLTGHGTVEMCRRAFKAGAAEFLEKPVDD 111 Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLD 177 + + + R L+ E ++G +V G +I L Sbjct: 112 ELLIEALQASVRQHVRSRERHQADRQAR-ERYAQLSSRECEVLGLIVEGLTNKEIGRALS 170 Query: 178 MDIRSIYAYKQRIEKRMGGKINELFIRSHS 207 + R++ ++ + ++ + IR ++ Sbjct: 171 LSPRTVETHRANLFAKLETDSLAMLIRRYA 200 >UniRef50_C6C0G1 Two component transcriptional regulator, LuxR family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C0G1_DESAD Length = 218 Score = 89.0 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 54/157 (34%), Gaps = 18/157 (11%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWRKHN 115 +D S+ + T + L + + + A+ + Sbjct: 49 LNPDVALMDLSMPIKSGVQAIQELSGEGKT-KFLALTAHVEPDHIYSALDAGASGYVLKT 107 Query: 116 SA----ISAVIYNDDGLDVANEKIRQ------LFIGRYLSFTGGNTLTQMEFTIMGYMVS 165 S+ + A+ G I L R S +LT+ E ++ +++ Sbjct: 108 SSSKELVMAIETVMQGKVYLAPDISAEVAKGFLQRDRSNSCDSLESLTEREREVLKQVLA 167 Query: 166 GYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELF 202 GY +IA++L + ++++ ++ K++G + Sbjct: 168 GYKNREIADLLVISVKTVEKHRSNFMKKLGLRSKAEL 204 >UniRef50_B2A6W2 Two component transcriptional regulator, LuxR family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6W2_NATTJ Length = 215 Score = 89.0 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 61/172 (35%), Gaps = 37/172 (21%) Query: 65 SGYIFVDFSVSF--------------------LRLFLEKDWIDYLASTDMGIVLVSDRNM 104 + +D S+ L + ++ + + ++ Sbjct: 49 PDVVLLDLSLPDKQGHEIIKELKESCSARVLALTMHEDEAYFKRVVEAGGDGYILKKAAD 108 Query: 105 QSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN------TLTQMEFT 158 L ISA+ G + ++ +L I Y + + L+ E Sbjct: 109 DEL----------ISAIRSVYQGEVIVDKTFTKLLIDYYRNPDKQSGTEKNYDLSDREKE 158 Query: 159 IMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 ++ + GY +IAE L + I+++ + RI++++G +R +++++ Sbjct: 159 VLQLIALGYTNKEIAEKLYISIKTVETHIARIKEKLGLNRRSELVR-YAMRN 209 >UniRef50_C0ZDE8 Two-component response regulator n=7 Tax=Bacillales RepID=C0ZDE8_BREBN Length = 214 Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 16/165 (9%) Query: 61 NARLSGYIFVDFSVSF-LRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWR 112 N + +D S+ L F I ++L + A+ + Sbjct: 44 NQLKPDVVLMDLSLPNGLDGFTASKEIRKSNPLVKIVILTMHDEEIFVQEAITVGAHGYI 103 Query: 113 KHNSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN---TLTQMEFTIMGYMVS 165 NS A++ G + Q I +L LT E ++ +V Sbjct: 104 LKNSHGELLFQAIVEVYRGKCFYKTSVSQEIINLWLRSDAKTLPSVLTLREKELVRLIVL 163 Query: 166 GYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 GY+ ++A+ L + ++++ +K I +++G I+ +++++ Sbjct: 164 GYSNKEMADKLLISVKTVENHKTNIMQKLGLDSKHQLIQ-YAIKN 207 >UniRef50_B9PAD6 Predicted protein n=33 Tax=cellular organisms RepID=B9PAD6_POPTR Length = 326 Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 52/134 (38%), Gaps = 13/134 (9%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 + + +++ ++ D L ++A+ G + +I Sbjct: 198 VSMHDNLEYVRQAIRAGARGYVLKDAPADEL----------LAAIQAVLAGRVFYSARIA 247 Query: 137 QLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 + + +S + LT E I+ + G IA L + +R++ ++ +++++G Sbjct: 248 RGMAAQAVSP--LDALTPRERDILHGIGRGQANKDIAVQLGVSVRTVETHRLNLKRKLGI 305 Query: 197 KINELFIRSHSVQH 210 + ++ ++VQ Sbjct: 306 EGRAELVK-YAVQQ 318 >UniRef50_P0AGA8 Transcriptional regulatory protein uhpA n=167 Tax=Gammaproteobacteria RepID=UHPA_ECO57 Length = 196 Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 49/144 (34%), Gaps = 13/144 (9%) Query: 69 FVDFSVSFLRLFLEKDWIDYLASTDMGIV----LVSDRNMQSLANYWRKH----NSAISA 120 D S+ + + +T M V + ++ + + A + + I+A Sbjct: 52 ICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAA 111 Query: 121 VIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI 180 V G I + LT+ E + + G +IA L + Sbjct: 112 VHTVATGGCYLTPDIAIKLASG-----RQDPLTKRERQVAEKLAQGMAVKEIAAELGLSP 166 Query: 181 RSIYAYKQRIEKRMGGKINELFIR 204 ++++ ++ + +++G + R Sbjct: 167 KTVHVHRANLMEKLGVSNDVELAR 190 >UniRef50_A0RDP4 DNA-binding response regulator n=75 Tax=Bacillaceae RepID=A0RDP4_BACAH Length = 221 Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 59/159 (37%), Gaps = 14/159 (8%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDR-------NMQSLANYWRKHN-- 115 + +D S+ + I T ++L S +++ A+ ++ Sbjct: 61 PDVVLMDLSMPKMDGIEATKQIKQYDETIKILILSSFSEQDYVLPALEAGADGYQLKEVQ 120 Query: 116 --SAISAVIYNDDGLDVANEKIRQLFIGRYL--SFTGGNTLTQMEFTIMGYMVSGYNPYQ 171 ++++I +G + K+ +GR + LT+ E ++ + G + + Sbjct: 121 PEQLVASIIAIYEGNANFHPKVTPALLGRSAVKKENPFSMLTKREQEVLQEIAKGRSNKE 180 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 IA L + +++ + I ++ ++V+H Sbjct: 181 IAAELHITEQTVKTHVSNILAKLEVDDRTQAA-LYAVKH 218 >UniRef50_D0MHE1 Two component transcriptional regulator, LuxR family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHE1_RHOM4 Length = 211 Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 51/162 (31%), Gaps = 15/162 (9%) Query: 57 TKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS-------DRNMQSLAN 109 ++ I VD + + +VL +Q+ A+ Sbjct: 40 QQSLPQCAPDVILVDIGLPDASGLTLIRALRPQLPHAEFLVLTVFDDNQHILEAIQAGAS 99 Query: 110 YWRKHNSA----ISAVIYNDDGLDVANEKIRQL----FIGRYLSFTGGNTLTQMEFTIMG 161 + ISA+ G + + + F + LT E ++ Sbjct: 100 GYLLKRDLPEHLISAIRIVHQGGSWMSAGVARRALELFRHQLAPAAALQQLTPREQEVLH 159 Query: 162 YMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 + G + +IAE L + I ++ + + I +++ + + Sbjct: 160 LLARGLSNAEIAERLYLSIETVRTHIRHIYRKLQARNRAEAV 201 >UniRef50_Q1GIA7 Two component transcriptional regulator, LuxR family n=29 Tax=Alphaproteobacteria RepID=Q1GIA7_SILST Length = 233 Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 58/160 (36%), Gaps = 14/160 (8%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH 114 A + I +D ++ + + I ++L + A + Sbjct: 67 ALVPDVILMDLNMPDVGGLSATEIIQERCPEIRVLILSMHDSPEYITTALSHGAVGYVLK 126 Query: 115 N----SAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 + +A+ G + T LT E TI+ + G + Sbjct: 127 DVQPEEIKTAIDAVMRGEQYLCTGAAGSLSPQS--QTSREALTGREQTILLELAQGKSNK 184 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 ++A+ LD+ +R++ +++ I++++G R ++++H Sbjct: 185 EVAQALDISVRTVETHRKNIKRKLGISSTAGLTR-YALEH 223 >UniRef50_B6IQR3 Transcriptional regulatory protein FixJ n=1 Tax=Rhodospirillum centenum SW RepID=B6IQR3_RHOCS Length = 209 Score = 88.2 bits (217), Expect = 2e-16, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 20/166 (12%) Query: 39 MWPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL 98 + + + GV E + D + + + + +V+ Sbjct: 37 TYEDGGPFLAAGVGE-----------RDCVIADVQLHDMTGIDLLLTLRARGQRNPVLVI 85 Query: 99 -------VSDRNMQSLA-NYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN 150 V+ M++ A ++ K V L R + Sbjct: 86 TGYASVEVAVEAMKAGATDFLTKPFEKAELVGKVRACLA-IARLRASETARRRAAAEKLA 144 Query: 151 TLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 L++ E ++G ++ G I +VL + I+++ A++ RI ++ G Sbjct: 145 ALSEREVEVLGQVIEGRTNRAIGDVLGISIKTVEAHRARIMEKTGA 190 >UniRef50_B3RA82 Response regulator protein; Response regulator receiver domain, HTH LuxR domain; higly similar to B. subtilis Transcriptional regulatory protein degU (Protease production enhancer protein) n=1 Tax=Cupriavidus taiwanensis RepID=B3RA82_CUPTR Length = 223 Score = 88.2 bits (217), Expect = 2e-16, Method: Composition-based stats. Identities = 18/177 (10%), Positives = 57/177 (32%), Gaps = 35/177 (19%) Query: 53 EGILTKNHNARLSGYIFVDFSVSF---------------------LRLFLEKDWIDYLAS 91 +L H + D + L + + +++ + Sbjct: 42 AIVLAGRH---APDLVVSDIHMPDANGLQLAARFAEQFPSVRVIALSMHKDPEYVRRAFA 98 Query: 92 TDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT 151 + ++ + + ++A+ G N +++ + Sbjct: 99 LGVAAYVLKEAPA----------HELVTAIRTVAAGGTYLNAELQAFLHTDEPPPSSRRA 148 Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSV 208 LT E T++ + G + +IAE L +R++ ++ + +++ ++ ++V Sbjct: 149 LTPKEATVLKLLAEGRSNKEIAERLGTSVRTVETHRLHLRRKLRVGGRAELVK-YAV 204 >UniRef50_A5FAZ3 Two component transcriptional regulator, LuxR family n=2 Tax=Bacteroidetes RepID=A5FAZ3_FLAJ1 Length = 219 Score = 88.2 bits (217), Expect = 2e-16, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 59/158 (37%), Gaps = 21/158 (13%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH 114 A + VD + L + + + I+L +++++ A+ + Sbjct: 48 ATKPDLLIVDIRMPNLTGIEVVEKLRSENNNVKIIMLSMHESEEYVLKSIKAGADGYLLK 107 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG----------NTLTQMEFTIM 160 S+ + A+ G + I + I + + T +T+ E I+ Sbjct: 108 GSSKEEFLKALHAVSSGGKYFSGDISSILISQLTNSTASLEPKQTLGEEMMITKREKEIL 167 Query: 161 GYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKI 198 ++SG +IAE L++ R+ ++ + K++ K Sbjct: 168 TLLLSGKGNKEIAEALEISKRTAEVHRFNLMKKLKVKN 205 >UniRef50_UPI0001AEC81D LuxR family transcriptional regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEC81D Length = 209 Score = 88.2 bits (217), Expect = 2e-16, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 12/154 (7%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHN 115 I +D S+ + + D I S +VL + + A + Sbjct: 47 LSPDVILMDISMPRMSGLVAIDKILSQRSDAKILVLSMHNEVEYIEAMRDAGAKGYILKE 106 Query: 116 SA----ISAVIYNDDGLDVANEKIRQLFIGRYLSF-TGGNTLTQMEFTIMGYMVSGYNPY 170 S+ + A+ +++ Q + + + LT+ E + +V+G Sbjct: 107 SSGESLVEAIKKVAANKTCFPDELTQSSSDQCQKHVSPLSVLTRREREVFFLVVAGNTSK 166 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 +IAE+LDM +++ ++ I K++ + IR Sbjct: 167 KIAELLDMSLKTAENHRSNIYKKLNLSSSAELIR 200 >UniRef50_A6UG27 Response regulator receiver protein n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6UG27_SINMW Length = 215 Score = 88.2 bits (217), Expect = 2e-16, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 59/164 (35%), Gaps = 9/164 (5%) Query: 48 NRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLAST-------DMGIVLVS 100 + E + + + + I +D + F ++ + + G + S Sbjct: 35 YQSASELLACDDLDT--ADCIILDLGLPDSDGFHVQEALAAAGGSQSIVFLTGKGDIPAS 92 Query: 101 DRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIM 160 R M++ A + +A++ D R+ + + LT E +M Sbjct: 93 VRAMKAGAVDFLTKPVEAAALLEAVDVALQRARSRRETEEKKANVAMRIDRLTARETQVM 152 Query: 161 GYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 +VSG QIA L ++I ++ R+ ++G + +R Sbjct: 153 HLVVSGLLNKQIAADLGTVEKTIKVHRGRMMSKLGVRTVADLVR 196 >UniRef50_D2QGZ7 Two component transcriptional regulator, LuxR family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QGZ7_9SPHI Length = 218 Score = 87.8 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 58/175 (33%), Gaps = 41/175 (23%) Query: 61 NARLSGYIFVDFSVSF---------------------LRLFLEKDWIDYLASTDMGIVLV 99 + L I +D S+ L + +D+I ++ Sbjct: 46 PSLLPDLILMDISLPGMSGIQTTQVISRLYKNVRVLMLSMHNNEDYILRSVEAGAYGYIL 105 Query: 100 SDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIG----------RYLSFTGG 149 D + + I A+ G + + + + R+ Sbjct: 106 KDSSSDEM----------IKAIRTIASGEKYYSSPVASIILSGYMQQLKKGDRHGRAERQ 155 Query: 150 NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 + L+ E I+ ++V G + +IAE L + +R++ ++ + +R+ + +R Sbjct: 156 SKLSNKEKEILQFLVDGMSSREIAEKLQLSVRTVDNHRANMMRRLQVRNAAELVR 210 >UniRef50_Q313W8 Two component transcriptional regulator, LuxR family n=3 Tax=Proteobacteria RepID=Q313W8_DESDG Length = 223 Score = 87.8 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 18/159 (11%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWRKHN 115 + +D S+ + I +VL + + A+ + + Sbjct: 49 NQPELVLMDISMPRMDGVQATRLIKKRHPEVRVLVLTVHGAGEYVYAALAAGADGYVLKD 108 Query: 116 SA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG-------NTLTQMEFTIMGYMV 164 ++ I AV G + + + YL+ G TLT E I + Sbjct: 109 ASNDEFILAVESVLGGKIYLSPGVSDAVVKGYLNDARGQSVSSSWETLTPREQEIFQLVA 168 Query: 165 SGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 GY +IAE+L + ++++ ++ + +++G Sbjct: 169 EGYKNREIAEMLVVSVKTVEKHRSNLMQKLGVHSAAELR 207 >UniRef50_Q1YTG7 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTG7_9GAMM Length = 214 Score = 87.8 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 51/156 (32%), Gaps = 18/156 (11%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH---- 114 G + +D + I ++L + R +Q+ A + Sbjct: 49 GLVVLDIRLPGRSGVDVLKQIKSEKPHLPVLILSSYPESQYAVRLIQAGAAGYISKDSEE 108 Query: 115 NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG-------NTLTQMEFTIMGYMVSGY 167 I AV G NE + L +L+ E+ I + SG Sbjct: 109 TEIIKAVKTAAAGGRYINEIVGGLLANTMSRSFSNADDLSLYESLSDREYQIFLELASGK 168 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 IAE L + +++ ++ R+ ++MG N I Sbjct: 169 RAKDIAEKLQVSAKTVATHRSRLMQKMGFSTNAELI 204 >UniRef50_Q1AVR6 Two component transcriptional regulator, LuxR family n=17 Tax=Bacteria RepID=Q1AVR6_RUBXD Length = 220 Score = 87.8 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 2/121 (1%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 L F + +++ ++ D + LA K + AV+ L V +E + Sbjct: 84 LTTFDDDEYVFRGLRAGARGYILKDTPSEELAAAIEKVHRG-EAVLDGPITLKVISE-LG 141 Query: 137 QLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 +L G G L++ E ++ + SG + +IA L + ++ + I +++G Sbjct: 142 RLSKGPAGPQPGSGGLSEREMEVLRLVASGASNREIARALYITEGTVKNHISSILRKLGF 201 Query: 197 K 197 + Sbjct: 202 R 202 >UniRef50_Q3SW32 Two component transcriptional regulator, LuxR family n=8 Tax=Bradyrhizobiaceae RepID=Q3SW32_NITWN Length = 216 Score = 87.8 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 51/148 (34%), Gaps = 7/148 (4%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWI-------DYLASTDMGIVLVSDRNMQSLANYWRKHNS 116 + +D ++ F + L + + ++ M+ A + + Sbjct: 54 SPACVILDLNLPGESGFDVLRRLADERVAAPILVISGAADISMAVAAMKYGALDFLEKPF 113 Query: 117 AISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVL 176 + +I + R + +F G + LT E ++ + G + + L Sbjct: 114 SSDVIIERVRAAVKVWREARGSERDGFANFPGRHLLTCREREVLSQVARGASNKEAGRRL 173 Query: 177 DMDIRSIYAYKQRIEKRMGGKINELFIR 204 + R++ ++ RI ++G K IR Sbjct: 174 GISPRTVEVHRARIMDKLGAKNTADLIR 201 >UniRef50_B1ZT64 Two component transcriptional regulator, LuxR family n=2 Tax=Verrucomicrobia RepID=B1ZT64_OPITP Length = 274 Score = 87.8 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 57/160 (35%), Gaps = 20/160 (12%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS--------DRNMQSLANYWRKH 114 + D S+ + + +V+VS R +++ A + Sbjct: 86 LRPDLVIADISLRGNSGIELIKNVKAF-DPGIDVVVVSMYDESIYALRVLKAGARAYVMK 144 Query: 115 ----NSAISAVIYNDDGLDVANEKIRQLFIGRY-------LSFTGGNTLTQMEFTIMGYM 163 + A+ +G +E++ + R+ + + ++L+ E I+ + Sbjct: 145 QDVTTRVLDAIRRARNGQLFVSERVATQMLNRFVDGTEDGAADSPVSSLSDRELEIVNLI 204 Query: 164 VSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 G +IA L + I+++ ++ I++++ + Sbjct: 205 GEGLPTREIAAKLFLSIKTVETHRVHIKRKLNLANATQLV 244 >UniRef50_Q9JMV7 Two-component response regulator n=2 Tax=Bradyrhizobium japonicum RepID=Q9JMV7_BRAJA Length = 214 Score = 87.8 bits (216), Expect = 2e-16, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 57/158 (36%), Gaps = 13/158 (8%) Query: 60 HNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWR 112 + ++ +D S+ + F I I+ + R ++ A + Sbjct: 49 YISKRPDVTVIDISLPDVSGFELMRRIRKDDPDAKIIMFSMNDDPAFVVRAVELGAQGYV 108 Query: 113 KHNSA----ISAVIYNDDGLDVANEKIRQL--FIGRYLSFTGGNTLTQMEFTIMGYMVSG 166 + AV G + + ++ + F G + + +T E I+ + G Sbjct: 109 SKGDDPRILLKAVRKVVAGDNFISPQLAEAVTFSGAAIKANPASQMTPRELEILRLLGRG 168 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 ++AE L + +++ +++++G K + IR Sbjct: 169 DKIVEVAEALGISYKTVANTTSLLKQKLGAKNHSDLIR 206 >UniRef50_C4DI56 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DI56_9ACTO Length = 235 Score = 87.4 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 53/159 (33%), Gaps = 18/159 (11%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWRKHN-- 115 + +D ++ + IVL S + + A + + Sbjct: 51 PDVVLLDLNMPGSDGAKVLTRLAASDHRAKVIVLTSVTEAVRVTEAVAAGAAGFLYKDID 110 Query: 116 --SAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIA 173 S A+ DG + + + + LT E ++ + +G + +IA Sbjct: 111 PDSLAQAIRSVADGQVIFARE--AVTAMTAPAPGPVAALTAREREVLALVAAGRSNREIA 168 Query: 174 EVLDMDIRSIYAYKQRIEKRMGG--KINELFIRSHSVQH 210 + L + +++ + + +++G + ++V H Sbjct: 169 KQLSVAEKTVKTHLSSLFRKLGVADRTQAAL---YAVTH 204 >UniRef50_Q021D5 Two component transcriptional regulator, LuxR family n=2 Tax=Acidobacteria RepID=Q021D5_SOLUE Length = 210 Score = 87.4 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 59/160 (36%), Gaps = 15/160 (9%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH 114 + +DF++ + + I A ++L +++ + Sbjct: 49 ELHPRVVVMDFAMPSMNGAVAARHILRTAPETAILILSMHAEASYVRTCLEAGVRGYLLK 108 Query: 115 N----SAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 N ++AV G V + ++ L + + G LT E ++ +V G + Sbjct: 109 NALDLEMVAAVKQVAAGKQVLDRRLGALDLPSGAAPAG---LTTRELEVLQLIVHGKSNK 165 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +IA VL + ++ ++ I + +G + ++++ Sbjct: 166 EIAAVLSLSANTVAVHRANIMQTLGIHNTAELVV-YAIRQ 204 >UniRef50_A3ZTK8 Two-component system response regulator-like protein (Nar family protein) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZTK8_9PLAN Length = 229 Score = 87.4 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 35/201 (17%) Query: 42 EESSYFNRGVVEGILTKNHNAR-----------------LSGYIFVDFSVSFLRLFLEKD 84 + F G+ + ++ + +D + Sbjct: 13 DGQPLFRDGMAYHLRDQSGFSVCGEASGVNQALELLEKQTPDIALIDICLDDGNGLELIR 72 Query: 85 WIDY-------LASTDMGIVLVSDRNMQSLANYWRKHNSAI----SAVIYNDDGLDVANE 133 I + + L ++R ++S A+ + I + DG + Sbjct: 73 NIKSRYPHIQMMVVSGYDDDLYAERALRSGASGYVNKREPIGVLLEGLRSVSDGKIYVSA 132 Query: 134 KIRQLFI------GRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYK 187 K+ + + G + LT E I + G +IAE L + +I Y+ Sbjct: 133 KVTERMLRITAQGGAQNLSSTLGALTDRELEIFELIGLGMASREIAERLHLSGNTIDTYR 192 Query: 188 QRIEKRMGGKINELFIRSHSV 208 +RI+K++G +R H+V Sbjct: 193 ERIKKKLGFHSGAELLR-HAV 212 >UniRef50_Q2LSF1 Two-component response regulator n=4 Tax=Deltaproteobacteria RepID=Q2LSF1_SYNAS Length = 217 Score = 87.4 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 62/165 (37%), Gaps = 18/165 (10%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV--SDR-----NMQSLANYWRKH 114 I +D S+ + I I L +DR +++ A+ + Sbjct: 46 ELHPEIIIMDISMPDMNGIDATRKITSDLPGIKVIALSMHADRHFVIGMLEAGASGYLLK 105 Query: 115 N----SAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT------LTQMEFTIMGYMV 164 + ++A+ + I + + Y+ G + LT E ++ + Sbjct: 106 DCAFEELVNAIQTVLSNHTYLSPTIADIVVKNYVHKAAGTSVVVSSELTPRERELLQLLA 165 Query: 165 SGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 G + QIA L + ++++ +++ I +++G I+ ++++ Sbjct: 166 EGLSAKQIAANLHVSVKTVETHRRNITQKLGVGSVAELIK-YAIR 209 >UniRef50_A1ASJ5 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ASJ5_PELPD Length = 208 Score = 87.4 bits (215), Expect = 3e-16, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 58/160 (36%), Gaps = 13/160 (8%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKH 114 + +D ++ L I IVL R MQ+ A + Sbjct: 45 VLRPDVVVMDIAMPELNGIDATRMIHGRLPEVKVIVLSMHNTREHVFRAMQAGARAYLLK 104 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 SA + AV G E + + ++L+ E ++ +V G Sbjct: 105 ESAGSGLVDAVRAVIRGECYFGEGVDAPQAV-AGFKSPLDSLSLREREVIQLVVEGRTSA 163 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +IAE+L + +SI Y+ R+ ++G ++ ++QH Sbjct: 164 EIAELLSLSPKSIETYRSRLMVKLGVGNIPALVK-FALQH 202 >UniRef50_A5WFD3 Two component transcriptional regulator, LuxR family n=3 Tax=Psychrobacter RepID=A5WFD3_PSYWF Length = 211 Score = 87.1 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 62/163 (38%), Gaps = 15/163 (9%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN-------MQSLANYWRKH 114 A + +D ++ + + + + S + +++ N + Sbjct: 45 ALSPDVVLLDVNMPNIGGVETTKRLRQFDEKVKILAVSSVSSQPYPSMLLKAGVNGYITK 104 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSF---TGGNTLTQMEFTIMGYMVSGY 167 + I A+ G + + + L+ + + L++ E + +V+ Sbjct: 105 GTPLDEMIKAIKKVYQGSKYFSSDVAEQLADMLLTDNEESPFDRLSEREKQVAMMVVNCQ 164 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +P QIA+ L + ++++ Y+ RI +++G + +++H Sbjct: 165 SPQQIADQLFVSVKTVNTYRYRIFEKVGVDSDVKLTHL-AMRH 206 >UniRef50_A2SCN0 Two-component response regulator n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SCN0_METPP Length = 210 Score = 87.1 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 61/156 (39%), Gaps = 13/156 (8%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDY-------LASTDMGIVLVSDRNMQSLANYWRKH 114 A + +D + + + LA + + + +++ A + Sbjct: 46 ALRPAVVVIDLGLPGMGGLELIARLRQRDEACRMLAFSMHRDAVWVAQALRAGALGYVTK 105 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSF--TGGNTLTQMEFTIMGYMVSGYN 168 +SA ++AV + G V + + L + + L+ EF +M +V G Sbjct: 106 SSAPSQLVAAVREVNQGRRVLSPDVSGEVASALLDPQDSAAHGLSPREFEVMRLLVGGRT 165 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 P +IA+ L + +++++ +I+ ++G + R Sbjct: 166 PQEIAQSLSLSVKTVHNVHYQIKSKLGTASDFELAR 201 >UniRef50_Q11VH7 Response regulator n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11VH7_CYTH3 Length = 220 Score = 87.1 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 23/165 (13%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHN 115 + +D ++ + D I ++L +++++ A + + Sbjct: 48 LKPDVVIMDITMPEMSGIEAADVISKKYPDSKVLILSMHDNETYILKSVEAGAYGYLLKD 107 Query: 116 SA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT------------LTQMEFTI 159 I A+ +G N I + + YLS LT+ E I Sbjct: 108 VDKDEFIKAITAVYNGDKYFNTAISSVLVSGYLSKVKQTDSIQSGYSNDEYELTKREKGI 167 Query: 160 MGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 + + G N +IA+ L + IR+I ++ I K++ K +R Sbjct: 168 LKMITDGKNNREIADGLGISIRTIETHRANIMKKLKVKNAVELVR 212 >UniRef50_B2JQA9 Two component transcriptional regulator, LuxR family n=4 Tax=Burkholderia RepID=B2JQA9_BURP8 Length = 209 Score = 87.1 bits (214), Expect = 3e-16, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 16/153 (10%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHN 115 +D + L I + +VL +S Q+ AN + Sbjct: 53 LKPDLAVLDLDLPSLDGLSMIRRIRAQDDSMRILVLSAKPDHVMSLHTQQAGANGYVSKG 112 Query: 116 SAISAVIYND----DGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQ 171 ++ ++ G D G + L+ E ++ Y+ G + + Sbjct: 113 RELTEMLTAARTVLLGFDCFPAN-----APHANKAGGLDVLSPREMEVLQYLARGVSNKE 167 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 IA L + +++ YK R+ +++G I Sbjct: 168 IASRLFLSDKTVSTYKTRLCEKLGLSSLAALIE 200 >UniRef50_B8G137 Two component transcriptional regulator, LuxR family n=3 Tax=Desulfitobacterium hafniense RepID=B8G137_DESHD Length = 217 Score = 87.1 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 57/161 (35%), Gaps = 19/161 (11%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS-------DRNMQSLANYWRKHN 115 + +D ++ L + + + +VL +Q A + Sbjct: 49 LHPDLVLLDLTMPKLNGVDCIEELLKKHADLKILVLTMHDDEEYLKAVLQVGAKGYVLKK 108 Query: 116 SA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTG--------GNTLTQMEFTIMGYM 163 +A +SA+ G + F+ R+L L++ E ++ + Sbjct: 109 AADVELLSAIRTVARGEMFIYPTMAAEFVYRHLVSPREPEKESKKLKQLSERELEVLRNL 168 Query: 164 VSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 G+ IA++L + ++++ YK R+ +++ +R Sbjct: 169 ALGHTNQDIADLLHVSVKTVETYKARVMEKLEMHKRAELVR 209 >UniRef50_A1ATT6 Two component transcriptional regulator, LuxR family n=2 Tax=Desulfuromonadales RepID=A1ATT6_PELPD Length = 203 Score = 87.1 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 52/153 (33%), Gaps = 14/153 (9%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWRKHN 115 +D ++ L + L I+L R + + A+ + + Sbjct: 46 LEPDIAVLDITMPKLDGISITRAMGNLGLATRAIILTMHDDPLMYGRAVSAGAHGFILKD 105 Query: 116 SA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQ 171 A +SA+ G + I+ I LT+ E I+G + G Sbjct: 106 DAYEELLSALRTVAAGGTAISRAIQHAAI---EPEPPVAELTEREREILGLIAHGCTNRM 162 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 IA+ L + I+++ ++ + ++ +R Sbjct: 163 IAQHLGISIKTVNNHRTNLMGKLNLHSTAELVR 195 >UniRef50_C1ZHR0 Response regulator n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZHR0_PLALI Length = 231 Score = 87.1 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 67/169 (39%), Gaps = 20/169 (11%) Query: 56 LTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDY-------LASTDMGIVLVSDRNMQSLA 108 N R +G I D + + ++ + + + G V ++ R M++ A Sbjct: 57 FLAQFNPRHTGCIICDVRMPGMSGLELQEVLRERNCLMPIIIISAFGDVPIAVRAMKAGA 116 Query: 109 NYWRKHNSAISAVIYNDDGLDVANEKIRQ------LFIGRYLSFTGGNTLTQMEFTIMGY 162 + K ++D L++ + + + F + + + LT E + Sbjct: 117 IHVLKKP------FDDNDFLELIQKALAEDARRREEFRTQQVVLDRYDRLTDREREVFEE 170 Query: 163 MVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGK-INELFIRSHSVQH 210 ++ G + +I + L + +++ A++ +I K+M I +L ++Q Sbjct: 171 VIEGLSSKEIGQRLSVSFKTVEAHRAKIMKKMEADSIPQLLRMWFTIQQ 219 >UniRef50_B4VFW8 Two-component system response regulator n=2 Tax=Bacteria RepID=B4VFW8_9ACTO Length = 216 Score = 87.1 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 55/165 (33%), Gaps = 19/165 (11%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDR-------NMQSLANYWRKH 114 I +D + + LA+ +++ S +++ A + Sbjct: 51 ELRPDVILMDIKMPGTDGIEALRRLRELANPARVLIVTSFTEQRTVVPALRAGAAGYVYK 110 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYL---SFTGGNTLTQMEFTIMGYMVSGY 167 + A+ G + ++ + + S + G LT E ++ ++ G Sbjct: 111 DIDPDALAGAIRSVHAGHVLLQPEVAVALLTQDDQGPSSSRGGALTDREREVLSHIADGR 170 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGG--KINELFIRSHSVQH 210 + +IA L + +++ + I ++ + +V+H Sbjct: 171 SNREIARALVLSEKTVKTHVSNILMKLDVADRTQAAL---WAVRH 212 >UniRef50_B1FBA4 Two component transcriptional regulator, LuxR family n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FBA4_9BURK Length = 204 Score = 87.1 bits (214), Expect = 4e-16, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 16/146 (10%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQS--------LANYWRKHNS 116 + VD ++ L + ++ + + I++ S + AN + + Sbjct: 48 PDLMIVDLNLPTLSGVDFVKRVR-VSDSHVRILVFSSARTEVMAGKIRAIGANGYVQKTE 106 Query: 117 AIS----AVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQI 172 IS AV G D G S L+ E T++ Y+V G++ +I Sbjct: 107 DISQMLNAVRATLSGFDCFPSAAGDPLSG---SGRIAAALSPREITVLSYLVKGHSNQEI 163 Query: 173 AEVLDMDIRSIYAYKQRIEKRMGGKI 198 A++L + +++ +K I ++ G Sbjct: 164 ADLLHVSHKTVSTHKAHIFQKTGITN 189 >UniRef50_UPI0001744C34 response regulator with a HTH DNA-binding domain n=2 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C34 Length = 234 Score = 86.7 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 63/162 (38%), Gaps = 18/162 (11%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRKHNSA 117 + VD ++ + + +V L ++R +++ A + N+ Sbjct: 63 PNVLIVDITLPDRSGLELIKDLHATHNQMHVLVVSMHEEDLYAERALKAGAKGYIMKNAP 122 Query: 118 I----SAVIYNDDGLDVANEKIRQLFI------GRYLSFTGGNTLTQMEFTIMGYMVSGY 167 SA+ G + K+ + + +G + L+ EF + ++ G Sbjct: 123 HDVFESALTRVSQGGVAVSHKMTDRVLMAFSSGVQPRPDSGLHNLSDREFEVFQHLGEGK 182 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 + +Q+AE + + +++ ++ I+ ++ + R ++++ Sbjct: 183 STHQVAESMRISPKTVDVHRMNIKNKLNLEDGAAVTR-YAIR 223 >UniRef50_A8UHM3 Two-component response regulator n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UHM3_9FLAO Length = 217 Score = 86.7 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 51/157 (32%), Gaps = 15/157 (9%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS-------DRNMQSLANYWRKHN 115 + +D ++ + I L S R +++ + + N Sbjct: 53 LSVEVLLLDINLPDTNGIDLSKQLLKKFPDLKIIALTSHDDASFAKRMLKNGVHGYLLKN 112 Query: 116 SA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN----TLTQMEFTIMGYMVSGY 167 + + A+ G + + + + N LT+ E ++ + Sbjct: 113 TDKIELLRALKTVLSGEIYLQKDMSDRLLYQRSKPKAKNGLNIKLTRREHEVLIAISEEL 172 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 QI+E L + +++ ++ I + G K + I+ Sbjct: 173 TTQQISEKLFISPKTVETHRSNIILKFGAKNSVGIIK 209 >UniRef50_UPI00016C424A two component transcriptional regulator, LuxR family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C424A Length = 205 Score = 86.7 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 9/148 (6%) Query: 65 SGYIFVDFSVSFLRLFLEKDWID-------YLASTDMGIVLVSDRNMQSLA-NYWRKHNS 116 G +D + L + + + +T G V + R M+S A + K Sbjct: 52 PGCAILDLRMPGLSGLAVLEQLATREIGPAVVLTTGFGSVPTTARAMRSGAVHVLEKPYD 111 Query: 117 AISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVL 176 + + L + EK R L R LT E ++ +VSG IA L Sbjct: 112 DQEMLDTVHEALRLDAEK-RTLRAQRIAIQARLTALTAREREVLDLVVSGKANKVIAREL 170 Query: 177 DMDIRSIYAYKQRIEKRMGGKINELFIR 204 + +S+ ++ + +++ +R Sbjct: 171 AVSEKSVEFHRGNMMRKLKVDNVAELVR 198 >UniRef50_Q15T22 Two component transcriptional regulator, LuxR family n=4 Tax=Alteromonadales RepID=Q15T22_PSEA6 Length = 214 Score = 86.7 bits (213), Expect = 4e-16, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 15/162 (9%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHN 115 + +D S+ + I + IVL + + M+ A + + Sbjct: 46 NAPDLVLMDMSMPGIGGLEATKQILRFSENTRVIVLSVHKENPIPAKVMRMGAFGYLTKD 105 Query: 116 SAIS----AVIYNDDGLDVANEKIRQLF-IGRYLSFTGG--NTLTQMEFTIMGYMVSGYN 168 S A+ G + I Q IG G +L++ E I + G Sbjct: 106 SDPKEMELAIRKVAAGQKYVSPDIAQQIAIGALDFSDGNPFESLSERELEITLMLTKGSK 165 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 IA+ L++ +++ ++ R+ +++ + +++H Sbjct: 166 VPDIAKFLNISAKTVNTHRYRMFEKLNVSTDVELTHL-ALRH 206 >UniRef50_B9XQH4 Two component transcriptional regulator, LuxR family n=2 Tax=Verrucomicrobia RepID=B9XQH4_9BACT Length = 223 Score = 86.7 bits (213), Expect = 5e-16, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 18/166 (10%) Query: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRK 113 N + VD S+ I +V L ++R +++ A + Sbjct: 51 NTLKPNLVLVDISLGNASGIDLIKNIKNQHDDLPVLVVSMHDESLYAERALRAGAMGYVM 110 Query: 114 HNSA---ISAVIYNDDGLDVANEK------IRQLFIGRYLSF-TGGNTLTQMEFTIMGYM 163 + + IY G D+ + + + G+ + L+ E + + Sbjct: 111 KHEPAKTVRGAIYKVLGGDIYLSERMASSMLVKFMKGKTDEPLSPLEILSDRELEVFRML 170 Query: 164 VSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 G QIAE +++ I +I +++ RI+ ++ K + + H++Q Sbjct: 171 GQGKGTRQIAEEMNLTIATINSFRARIKDKLHLKSSTEVM-LHAIQ 215 >UniRef50_C0QFI8 DNA-binding response regulator (LuxR-family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFI8_DESAH Length = 220 Score = 86.7 bits (213), Expect = 5e-16, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 55/163 (33%), Gaps = 18/163 (11%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNS 116 + +D ++ + + + I I L DR + A + +S Sbjct: 47 KPDIVIMDITMPNMNGSIATEKIMQALPRTRVIALSMHADRRYIDRMFNAGAIAYVLKDS 106 Query: 117 AIS----AVIYNDDGLDVANEKIRQLFIGRYLSFT------GGNTLTQMEFTIMGYMVSG 166 A + A+ G + I + S ++ E ++ + G Sbjct: 107 AFAELFDAIQAVGRGKYYISPSIAKTLADSCTSAPDTPQKCPFGRISPREREVLQLIAEG 166 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 QIAE L + I+++ A+++ I ++ R ++Q Sbjct: 167 VKTRQIAERLFVSIKTVEAHRRNIMNKLMISSVAGLTR-FAIQ 208 >UniRef50_C0EEH8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EEH8_9CLOT Length = 206 Score = 86.7 bits (213), Expect = 5e-16, Method: Composition-based stats. Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 12/150 (8%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD------RNMQSLANYWRKHNSA- 117 + +D + L I + + ++ D R +++ + NS Sbjct: 49 PDVVLLDIRMPLLDGIEAAAQIMQMEAGAPLLLTTFDEAEFILRALKTGVRGYILKNSPA 108 Query: 118 ---ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG--NTLTQMEFTIMGYMVSGYNPYQI 172 ++AV +G V + I + R + + LT E ++ + G + +I Sbjct: 109 QRILTAVRAVAEGGTVFQQDILEYIRDRTVFPDHTIFSLLTPREMEVVALIAEGLSNKEI 168 Query: 173 AEVLDMDIRSIYAYKQRIEKRMGGKINELF 202 AE L + ++ + I ++ G + Sbjct: 169 AERLFLSNGTVRNHISVILEKTGLEHRTQI 198 >UniRef50_C1ZLY1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZLY1_PLALI Length = 243 Score = 86.7 bits (213), Expect = 5e-16, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 19/163 (11%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNSA 117 + +D + +F + + A + I L + R ++ + Sbjct: 76 PDVVVMDVELPGRSVFDVAETLRTKAHSVRVIYLSGYASDVLLSRALKPGCFGYLLKGEP 135 Query: 118 ISAVIYND----DGLDVANEKIRQLFIGRYLS-------FTGGNTLTQMEFTIMGYMVSG 166 +SA+ DG + +IRQ +S T LT + ++ ++ +G Sbjct: 136 VSAIRQAILRAIDGEMSFSPEIRQRLAQDPVSRRFSLPADTPLTGLTGRQLEVLRHLANG 195 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 + +IA ++ + +S+ ++K RI ++G R +++ Sbjct: 196 ASVKEIARLMHLSQKSVDSHKYRIMHKLGIHDRVELAR-FAIR 237 >UniRef50_Q2SBZ4 Response regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SBZ4_HAHCH Length = 204 Score = 86.7 bits (213), Expect = 5e-16, Method: Composition-based stats. Identities = 17/157 (10%), Positives = 51/157 (32%), Gaps = 12/157 (7%) Query: 56 LTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLAST-------DMGIVLVSDRNMQSLA 108 L + D + + + + + V ++ M+ A Sbjct: 46 LEDAGVPLSDKCVVTDLRMPDMNGLELMEELRTRRLSVPVVLITGHADVTLAVSAMRMGA 105 Query: 109 -NYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGY 167 N+ K V + +R + L+ E ++ ++ +G Sbjct: 106 ANFLEKPFENSILVETVKSAISEPGSALRN----PQAAKEKLGRLSPRERQVLTHVCAGK 161 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 IA++L + ++++ ++ + ++G + + +R Sbjct: 162 LNKTIADILGISVKTVELHRANMASKLGARNVQDLVR 198 >UniRef50_A6BYP5 Response regulator receiver domain protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BYP5_9PLAN Length = 221 Score = 86.3 bits (212), Expect = 5e-16, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 18/162 (11%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRKHNSA 117 I VD S+ + S + L ++R++++ A + A Sbjct: 55 PDLIIVDISLKDGSGLELIKDVKAQFSQIKMLTVSMHDETLFAERSLRAGALGYVNKQQA 114 Query: 118 ----ISAVIYNDDGLDVANEKIRQLFIGRYLSFT------GGNTLTQMEFTIMGYMVSGY 167 I A+ G + + + I R + +L+ E + + G Sbjct: 115 PEQLIKAIYQVLKGKVYLSAAVTERMICRSIGSDNYSDQSPIESLSDRELEVFEQIGEGE 174 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 IA+ L++ +++ Y++ I+ ++ + R H++Q Sbjct: 175 TTRSIAQKLNLSSKTVETYRENIKHKLNLENATALTR-HAIQ 215 >UniRef50_C9LUT0 DNA-binding response regulator UhpA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LUT0_9FIRM Length = 216 Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 58/157 (36%), Gaps = 13/157 (8%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN-------MQSLANYWRKH---- 114 +D S+ + + + ++L +++ AN + Sbjct: 55 DIALLDLSMPHMGGLECLRRLKAMQPAVRVLILTMHSERQYVCECLRAGANGYLCKDTLD 114 Query: 115 NSAISAVIYNDDGLDVANEKIRQLFI-GRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIA 173 A+ G E+ +L I G L+ E ++ +V GY+ IA Sbjct: 115 AELFRALRTVAAGGRYLGEREAELLIDGALEEPEEPAALSTREREVLELIVHGYSLSTIA 174 Query: 174 EVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 + L + I+++ YK R+ +++ N + ++++H Sbjct: 175 DKLYLSIKTVSTYKTRLLQKLDCTQNSELV-DYALRH 210 >UniRef50_A5F1Q5 Transcriptional regulator, LuxR family n=54 Tax=Gammaproteobacteria RepID=A5F1Q5_VIBC3 Length = 216 Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 14/159 (8%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN-------MQSLANYWRKHN-- 115 + +D S+ + I ++L N MQ+ A + Sbjct: 55 PDVVLMDVSMPIMNGIEATRLIKEEVPHTKVLMLTMHDNREYIMQVMQAGAMGYMLKEIS 114 Query: 116 --SAISAVIYNDDGLDVANEKIRQLFIGRYLSF--TGGNTLTQMEFTIMGYMVSGYNPYQ 171 + A+ G E + + N L++ E I+ + G + + Sbjct: 115 ALKMVQAIKTVHQGATYFCESTTSTLFSQEILPVANKPNPLSRREEAILRMVAQGCSSKK 174 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 IA +L++ R++ ++Q I+ ++ + +++QH Sbjct: 175 IATLLNISYRTVETHRQNIKHKLDIHSTAELAQ-YALQH 212 >UniRef50_A5VAL2 Response regulator receiver protein n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VAL2_SPHWW Length = 208 Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 7/151 (4%) Query: 61 NARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRK 113 +G + +D ++ L + L + I+L V+ M+S A + + Sbjct: 45 PQMEAGCVLLDLNMPGLNGLEVLHRLQKLDNRFETILLTGQGDIGVAVEAMKSGAIDFIE 104 Query: 114 HNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIA 173 ++ D E + + G + LT E ++ ++ G IA Sbjct: 105 KPYDNRMLLGALDNGFARIEDREKEASAIQSARDGIDRLTPRERDVLLGLIDGKANKIIA 164 Query: 174 EVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 LD+ R++ Y+ + ++G + +R Sbjct: 165 YELDISPRTVEIYRANLMDKLGVRSVAEAVR 195 >UniRef50_C7PDQ0 Two component transcriptional regulator, LuxR family n=4 Tax=Bacteroidetes RepID=C7PDQ0_CHIPD Length = 211 Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 17/172 (9%) Query: 47 FNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD----- 101 F G K H + +D S+ + I + ++ +S+ Sbjct: 37 FTTGTAFLSFLKKHTI---DIVLLDISLPDINGIELCLEIKKFS-PHTIVLALSNHSERS 92 Query: 102 ---RNMQSLANYWRKHN----SAISAVIYNDDGLDVANEKIRQLFIGRYLSF-TGGNTLT 153 + +Q A+ + N I+ + DG ++ ++++ ++ G LT Sbjct: 93 MVLQMLQQGASGYLLKNISGEELIACIHEALDGQITFSQAVKEIMSRPSVTELKGVPRLT 152 Query: 154 QMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRS 205 + E I+ + G IA L + ++ +++ + ++ K L IR+ Sbjct: 153 KREKEILQLIAEGQTTPDIAATLHLSPLTVETHRKSLLQKFEVKNVALLIRT 204 >UniRef50_C1F9F6 Two-component response regulator n=2 Tax=Bacteria RepID=C1F9F6_ACIC5 Length = 213 Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 48/150 (32%), Gaps = 17/150 (11%) Query: 60 HNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD--------RNMQSLANYW 111 H +D + + I S IV+++ R +Q+ A + Sbjct: 51 HREHQPDITIMDLRLPRMNGVEAITRIRE-ESPGARIVVLTTFDGDEDIYRALQAGARGY 109 Query: 112 RKHNSAI----SAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGY 167 +A+ G + + R G+ LT E ++ +V G Sbjct: 110 LLKGMDADDLTAAIRSVHAGKSRIPTVVAERLAERM----SGSELTARELDVLRLIVQGR 165 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 + +IA L + ++ + + ++G Sbjct: 166 SNREIAADLHISEATVKTHINNLLSKLGVS 195 >UniRef50_B9TGG7 Response regulator uvrY, putative n=1 Tax=Ricinus communis RepID=B9TGG7_RICCO Length = 210 Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 54/161 (33%), Gaps = 15/161 (9%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNS 116 + +D + + + + V R + + A + + Sbjct: 47 DFDLLVLDTEMPGITGAELIARVHAHVPRLPILAFSVHNEAQVVRRILYAGAAGYLSKDC 106 Query: 117 A----ISAVIYNDDGLDVANEKIRQLFIGRY---LSFTGGNTLTQMEFTIMGYMVSGYNP 169 + A+ G + K+ + S L+ E I+ +V+G Sbjct: 107 DPETLLFAIRKIASGGRFIDLKLAERIAFHKKKDESKRPHEQLSNRELCILRLLVAGKTV 166 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +A L + +++ +K R+ ++MG + N IR + + H Sbjct: 167 NDVASQLVISNKTVSTHKARMMEKMGFQSNAEMIR-YGIDH 206 >UniRef50_Q3K943 Putative LuxR family response regulator n=4 Tax=Gammaproteobacteria RepID=Q3K943_PSEPF Length = 208 Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 56/154 (36%), Gaps = 14/154 (9%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWRKHNSA 117 I +D S+ L + ++S +VL + R MQS A+ + Sbjct: 47 PDLIILDISIPKLDGLEVLARFNAMSSPFKTLVLTAQCPTLFGIRCMQSGASGYVCKQED 106 Query: 118 IS----AVIYNDDGLDVANEKIR---QLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 +S A+ G + + + RY ++ E ++ G Sbjct: 107 LSELVSAIKAVLSGYNYFPSQALNPVRHDDVRYAELELFKSVNDRELMVLQLFAQGRTNK 166 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 +IA+ + + +++ YK+R+ +++ K I Sbjct: 167 EIAKGMFLSNKTVSTYKKRLMQKLKAKSLVELIE 200 >UniRef50_Q2RYV0 DNA-binding response regulator, LuxR family n=3 Tax=Rhodothermaceae RepID=Q2RYV0_SALRD Length = 253 Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 18/162 (11%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRKHNSA 117 VD S+ + +V + ++R +Q+ A+ + + Sbjct: 55 PDTAVVDISLEDAHGLDLVQNLQSQCPEVQVVVYSMYDEMVYAERAIQAGASGYLMKDQP 114 Query: 118 ----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT------LTQMEFTIMGYMVSGY 167 I A+ D G + ++ + + T E + + G Sbjct: 115 TEDLIEAIRVVDGGEVFLSREMASQILNKVARGESSEPSFPIEEFTDRELAVFQMLGEGC 174 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 + +I + L++ +++ Y++R ++++G ++ +VQ Sbjct: 175 SIEEIQDRLNLARKTVETYRRRAKEKLGFDSVSKLLQ-FAVQ 215 >UniRef50_Q5NZX4 Two-component response regulator n=3 Tax=Betaproteobacteria RepID=Q5NZX4_AZOSE Length = 211 Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 58/165 (35%), Gaps = 15/165 (9%) Query: 53 EGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQ 105 E + + +D S+ L + +VL ++ + +Q Sbjct: 38 EVLAAIKTCNAH--VLLLDMSMPGLSGVDLVRRVKSEWPGLPILVLSMYGETQLAAKVLQ 95 Query: 106 SLANYWRKHNSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG--NTLTQMEFTI 159 S A+ + +SA+ G + + + + T LT E I Sbjct: 96 SGASGYVTKGKGREILLSAIRKVASGHRYIDPDLAEKILFDVRMPTASVQEQLTHRESQI 155 Query: 160 MGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 + + +G + QIA L + +++ +K R +++ + N ++ Sbjct: 156 LRMLQAGKSVTQIANELSVSPKTVSTHKIRAMQKLHCQNNVELLK 200 >UniRef50_C7RJ85 Two component transcriptional regulator, LuxR family n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJ85_9PROT Length = 205 Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 11/146 (7%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLAS-------TDMGIVLVSDRNMQSLA-NYWRKHNSA 117 G + +D + + DW+ + + V + R M+ A ++ K + Sbjct: 52 GCVLLDIRMPRITGPEIHDWLRQQSPDVPVIFLSGYADVPTAVRAMRLGAFDFLEKPFNV 111 Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLD 177 + + L +A E + R ++ +LT E ++ +VSG IA L Sbjct: 112 QQLIERVNAALRLAEE---RRAGSRAVTDDWRQSLTARETEVLDGIVSGKRNKVIAADLG 168 Query: 178 MDIRSIYAYKQRIEKRMGGKINELFI 203 + R++ ++ RI ++ G + Sbjct: 169 ISERTVETHRARIMEKSGANSVIDLV 194 >UniRef50_C7P9Z1 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7P9Z1_CHIPD Length = 211 Score = 86.3 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 15/158 (9%), Positives = 51/158 (32%), Gaps = 15/158 (9%) Query: 62 ARLSGYIFVDFSVSFLRL-------FLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKH 114 R + +D + + + L + ++ + + ++ + Sbjct: 46 ERQPDVLLLDMHLPDMSGPELAASILKNYPQVRILVLSSSDVLFLVKKMLKLGCMGYLLK 105 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT----LTQMEFTIMGYMVSG 166 S + A+ G + + Q I LT+ E ++ ++ Sbjct: 106 ESDDVTILQAIETVQKGGQYLSPALNQQLIEDMFRNKKSEKKNTALTRREKEVLQLIIDE 165 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 + +IA+ L + + ++ ++ + ++ K ++ Sbjct: 166 HTNQEIADKLFLSLHTVENHRISLLHKLEVKNTAGLVK 203 >UniRef50_UPI00017468E1 two-component response regulator n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468E1 Length = 210 Score = 86.3 bits (212), Expect = 7e-16, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 52/152 (34%), Gaps = 17/152 (11%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD--------RNMQSLANYWRKHN 115 + +D + + + + A + I++ S R +++ A + + + Sbjct: 53 TPDVVIMDLQLGEVNGITCTEQLGQ-AHPGIRILVFSSFARDEDVYRAIRAGALGYLQKS 111 Query: 116 SA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQ 171 + + A+ G I Q R + E ++ M G + + Sbjct: 112 APREDLLKAIRTVGLGKRYLPGDIAQRLAERLGRPEP----SPREREVLAQMAKGRSNKE 167 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 IA VL + ++ + + +++G + + Sbjct: 168 IASVLGLSEETVKRHVSNVLEKLGAQDRTQAV 199 >UniRef50_P0ACZ6 Positive transcription regulator evgA n=68 Tax=Enterobacteriaceae RepID=EVGA_ECO57 Length = 204 Score = 86.3 bits (212), Expect = 7e-16, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 58/147 (39%), Gaps = 11/147 (7%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN-------MQSLANYWRKH 114 + +D + + + + + + I++ + + + AN + Sbjct: 43 TLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSK 102 Query: 115 ----NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 N+ I+A+ +G + + ++L++ E ++M Y++ G + Sbjct: 103 KEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKDNN 162 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGK 197 IAE + + +++ YK R+ +++ K Sbjct: 163 DIAEKMFISNKTVSTYKSRLMEKLECK 189 >UniRef50_Q11YW8 Two component transcriptional regulator, LuxR family n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11YW8_CYTH3 Length = 215 Score = 85.9 bits (211), Expect = 7e-16, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 56/160 (35%), Gaps = 17/160 (10%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH 114 + +D ++ + + IVL +++QS A + Sbjct: 48 TLDPEIVVLDITMPKKSGIEVITEVKKYNNRVKFIVLSMHDNPEYVLKSVQSGALSYLLK 107 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTG------GNTLTQMEFTIMGYMV 164 N+ I AV G + I + + + TLT+ E ++ + Sbjct: 108 NTDHEEIIKAVKAVSAGQKYFSPDIYSIILNGLANPELVKASQIAETLTKRELEVLKEVS 167 Query: 165 SGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 G + IA+ L + +R++ ++ + K++ + I+ Sbjct: 168 MGLSTKLIADKLFISVRTVETHRINLMKKLDVHNSAELIK 207 >UniRef50_Q04VJ6 Receiver component of a two-component response regulator n=4 Tax=Leptospira RepID=Q04VJ6_LEPBJ Length = 221 Score = 85.9 bits (211), Expect = 7e-16, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 51/169 (30%), Gaps = 23/169 (13%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH- 114 + D S+ L + I+L + ++ N + Sbjct: 48 LNPDLVITDISMPGLSGIDLVKNLRKQYPNIRTIILSRHDNREYVQKLLELGINGYVLKD 107 Query: 115 ---NSAISAVIYNDDGLDVANEKIRQLFIG-----------RYLSFTGGNTLTQMEFTIM 160 N + A+ G + I F+ + + L+ E I+ Sbjct: 108 DAGNDLLRAIEAVHKGETYLSPGITAHFLSGFVGSGKPGEENQDAKKAFSVLSDREREIL 167 Query: 161 GYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 + G + I ++L + ++ ++ I K++ + ++++ Sbjct: 168 KLVAEGNSNESIGKILGISPATVKVHRANIMKKLNLHKVADLV-MYAIR 215 >UniRef50_A7IKS5 Response regulator receiver protein n=1 Tax=Xanthobacter autotrophicus Py2 RepID=A7IKS5_XANP2 Length = 211 Score = 85.9 bits (211), Expect = 9e-16, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 9/148 (6%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLA-NYWRKHNS 116 G + +D + + + L +T I S M++ A ++ K Sbjct: 49 PGCLLLDLRMPGPSGLELQRALKNLGATLPVIFFTAHADVACSVEAMKAGAVDFLMKPVE 108 Query: 117 AISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVL 176 + GL+ + +R LTQ E + +V+G QIA+ L Sbjct: 109 PQVLLDAVHRGLER-DRLLRAARADAQDLRARFALLTQREREVFDLVVAGKLNKQIADEL 167 Query: 177 DMDIRSIYAYKQRIEKRMGGKINELFIR 204 + R++ A + ++ ++G + R Sbjct: 168 GIAERTVKAQRAQLMTKLGAESAAELGR 195 >UniRef50_A0NNP3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNP3_9RHOB Length = 205 Score = 85.9 bits (211), Expect = 9e-16, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 52/153 (33%), Gaps = 13/153 (8%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN-------MQSLANYWRKH- 114 + +D S+ + + L ++L N +Q+ A + Sbjct: 42 LRPDVLLMDVSMPVMNGLEAATQMRKLLPEIAVLILSVYDNPEYVRGVVQAGARGYILKD 101 Query: 115 ---NSAISAVIYNDDGLDVANEKIRQLFIG--RYLSFTGGNTLTQMEFTIMGYMVSGYNP 169 I+A+ G + + +G LT E ++ + G Sbjct: 102 ISAAEMITAITSVASGGYYFSSAVGPTLVGAGTSAPVEDPYGLTDRERQVLTAIARGQPN 161 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELF 202 ++A+ L + +R++ +++ + +++G K Sbjct: 162 KEVAKELGISVRTVESHRLNLREKVGNKNAAQL 194 >UniRef50_B1ZU68 Two component transcriptional regulator, LuxR family n=2 Tax=Opitutus terrae PB90-1 RepID=B1ZU68_OPITP Length = 238 Score = 85.9 bits (211), Expect = 9e-16, Method: Composition-based stats. Identities = 22/154 (14%), Positives = 51/154 (33%), Gaps = 17/154 (11%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD--------RNMQSLANYWRKHNS 116 + +D+ +S I +++ S + + A + + + Sbjct: 55 PSVVVLDWMLSGRSGLGFVRDIR--IDPPPRVLVFSAITSALAVREALAAGAKGYLEKTA 112 Query: 117 AI----SAVIYNDDGLDVANEKIRQLFIGRYLSFTG---GNTLTQMEFTIMGYMVSGYNP 169 A+ G + ++L + G LT E ++ Y+ G Sbjct: 113 PFDEFKMALRSVAAGREYLGASAKRLLQQEAHAAMRLGAGPALTNREREVLRYVAEGLGS 172 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 +IA+ L + R++ ++ I KR G + + Sbjct: 173 KEIADRLALSTRTVENHRANILKRTGLRSVAQLV 206 >UniRef50_D1AEE5 Two component transcriptional regulator, LuxR family n=37 Tax=Bacteria RepID=D1AEE5_THECD Length = 244 Score = 85.9 bits (211), Expect = 9e-16, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 56/177 (31%), Gaps = 20/177 (11%) Query: 52 VEGILTKNHNARLS---GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD------- 101 E I A +D ++ + + + ++L Sbjct: 63 AEAIEQVRRRAGTPQEVDLAVLDVAMPRMTGLQAARELSRMYPRLRILILTMHDNEQYLF 122 Query: 102 RNMQSLANYWRKHN----SAISAVIYNDDGLDV-----ANEKIRQLFIGRYLSFTGGNTL 152 +++ A + + + A G + IR L Sbjct: 123 EALKAGAAGYVLKSLADRDLVQACRAAVRGEPFLYPGAISVLIRSYLEQARQGEEPETPL 182 Query: 153 TQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 T E I+ + G++ +IA+ L + ++++ ++ I ++G K R ++++ Sbjct: 183 TPREEEILKLVAEGHSSREIADTLFISVKTVERHRANILAKLGMKDRLELTR-YAIR 238 >UniRef50_B0SY65 Two component transcriptional regulator, LuxR family n=1 Tax=Caulobacter sp. K31 RepID=B0SY65_CAUSK Length = 222 Score = 85.9 bits (211), Expect = 9e-16, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 66/169 (39%), Gaps = 21/169 (12%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLAS-TDMGIVLVSDRN------MQSLANYWRKH 114 + + +D S+ L + + L + T++ I + D + + A + Sbjct: 50 ELVPDVMILDISMPDLSGVIVARDVRKLKTHTELLIFTMHDSEQLVREVLSAGARGFVLK 109 Query: 115 NSAISAVIYNDDGL----DVANEKIRQLFIGRYLSF---------TGGNTLTQMEFTIMG 161 +++ +I L I + YLS G TLT E I+ Sbjct: 110 SASTDNIIAAVASLLNHKPYFCPGITDTVLRGYLSPGGHALGELIEGAETLTTRELLIVQ 169 Query: 162 YMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 + + IA +LD+ ++++ +++ I +++G +R +++++ Sbjct: 170 LLAESRSNKVIASMLDISVKTVESHRGNIMRKLGAHSLADIVR-YAIRN 217 >UniRef50_B1ZVM0 Two component transcriptional regulator, LuxR family n=5 Tax=Bacteria RepID=B1ZVM0_OPITP Length = 219 Score = 85.9 bits (211), Expect = 9e-16, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 18/162 (11%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNSA 117 +D ++ L F I ++L + +++ A + ++A Sbjct: 51 PDIAIMDITMPGLNGFDATARIAREHPRTKVLILSMHTAEDYVLQALRAGATGYLLKDAA 110 Query: 118 IS----AVIYNDDGLDVANEKIRQ------LFIGRYLSFTGGNTLTQMEFTIMGYMVSGY 167 + A+ G + I + + LT I+ + G Sbjct: 111 TAELQLALNAVRKGETYLSPSISKSVLARFRQQEQDPRAEPTKALTPRMREIVQLIAEGR 170 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 + +IA +L++ +++I ++ + R+G +R ++++ Sbjct: 171 STKEIAFLLNLSVKTIETHRMHLMARLGLHDVAGVVR-YALR 211 >UniRef50_Q5ZS73 Response regulator GacA n=10 Tax=Gammaproteobacteria RepID=Q5ZS73_LEGPH Length = 225 Score = 85.5 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 15/163 (9%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS-------DRNMQSLANYWRKH 114 + +D + + + + I + + R +Q A + Sbjct: 51 THSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIAVTAICSDPLPTRVLQLGAMGYLTK 110 Query: 115 NSAI----SAVIYNDDGLDVANEKIRQLFIGRYLSFTGG---NTLTQMEFTIMGYMVSGY 167 S +A+ G + +I Q L + + L++ E +M + SG Sbjct: 111 ESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMITSGM 170 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 N IA+ L + ++I Y+ R+ +++G K + +++H Sbjct: 171 NVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYL-AMKH 212 >UniRef50_B4D4R4 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4R4_9BACT Length = 195 Score = 85.5 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 55/157 (35%), Gaps = 12/157 (7%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL--VSDRNM-----QSLANYWRKHNS 116 + +D + L + +V DR + Q+ + + + Sbjct: 32 KPQLVVLDLILPELNGLEVLRALRAEMREVRCMVYSGTLDRRLIVEALQARPHGFVHKSD 91 Query: 117 AIS----AVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQI 172 + A+ +G +L T + LT E I+ + G + ++ Sbjct: 92 PLKIFCEALRAVTEGCSYFTPFATKLMDDERHLHTAASHLTDRERAILQMIAEGMSNKEM 151 Query: 173 AEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 AE + + +++ ++ ++ +++G R ++V+ Sbjct: 152 AERISIAPKTVEHHRAQVMQKLGMHDVATLTR-YAVR 187 >UniRef50_Q39C19 Two component transcriptional regulator, LuxR family n=60 Tax=Betaproteobacteria RepID=Q39C19_BURS3 Length = 271 Score = 85.5 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 47/154 (30%), Gaps = 14/154 (9%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHN-- 115 I +D S+ + ++ + R +++ A + Sbjct: 49 FDVILLDISLPDTNGIEVLKRLKRKLPRTPVLMFSMYREDQYAVRALKAGAAGYLSKTVN 108 Query: 116 --SAISAVIYNDDGLDVANEKIRQLF---IGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 I A+ G + + + + L+ E+ + + SG Sbjct: 109 AAQMIGAIQQVAAGRKYVSPAMAEALAEYVSFENEPLPHEKLSDREYQTLCMLASGKRLT 168 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 IA L + ++++ Y+ R+ ++M N Sbjct: 169 DIANTLSLSVKTVSVYRSRLLEKMRLSNNAELTF 202 >UniRef50_Q842F8 Response regulator, two-component system n=8 Tax=Rhodococcus RepID=Q842F8_RHOSR Length = 209 Score = 85.5 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 13/153 (8%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH--- 114 + +D +S + I ++ ++L D+ A + Sbjct: 48 PELVVLDIRLSDCNGLDLLEQISAISPETRVVMLSMYGAKGYVDKAKTRGARGYITKECL 107 Query: 115 NSAISAVIYN---DDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQ 171 + + +V+Y D+G + L ++L+ E +M + SG + Sbjct: 108 DEELVSVLYTVMKDEGFVSFRADTTEPGGSESLLEANIDSLSSRELEVMKLIASGLTNTE 167 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 IAE L + R++ +++ I++++ + R Sbjct: 168 IAEELTVSPRTVESHRASIQRKLLIRTRAELAR 200 >UniRef50_C4ZM15 Two component transcriptional regulator, LuxR family n=1 Tax=Thauera sp. MZ1T RepID=C4ZM15_THASP Length = 226 Score = 85.5 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 15/132 (11%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 L + D+ + L+ D + L A+ G + + Sbjct: 83 LSMHDTGDFFEQALRCGARGYLLKDAAVAELE----------MAIAAVMRGDVYLSPAVS 132 Query: 137 QLFIGRYLS-----FTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 + +G L+ + LT + I+ + SG +IA LD+ ++++ A++ +I Sbjct: 133 RHLVGNMLARPPEDERAASVLTPRQTEILELIGSGLGTKEIARRLDLSVKTVEAHRAQIM 192 Query: 192 KRMGGKINELFI 203 +R+G + + Sbjct: 193 ERLGVRDIANLL 204 >UniRef50_A5FQU5 Two component transcriptional regulator, LuxR family n=1 Tax=Dehalococcoides sp. BAV1 RepID=A5FQU5_DEHSB Length = 209 Score = 85.1 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 15/165 (9%) Query: 53 EGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQ 105 E L + N I +D ++ + I + +VL R ++ Sbjct: 38 ETKLKISANNY--DLILLDLTLPDSQGLNLLKDIKTIKKHTPILVLSVHPEEQYGIRCIK 95 Query: 106 SLANYWRKHNSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTL--TQMEFTI 159 + A+ + SA I A+ G + + ++ + G L + EF I Sbjct: 96 AGASGFISKESAPFELIKAIRKVQAGGRYISPALAEIMACQIFDKDGPRHLCLSDREFDI 155 Query: 160 MGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 + G ++AE + ++IY Y++ + +MG N R Sbjct: 156 FIGIAQGLRVTELAERFKLSPKTIYTYREHVLTKMGLSSNVELAR 200 >UniRef50_C1DAL9 Response regulator n=3 Tax=Proteobacteria RepID=C1DAL9_LARHH Length = 225 Score = 85.1 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 20/147 (13%), Positives = 55/147 (37%), Gaps = 7/147 (4%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLAST-------DMGIVLVSDRNMQSLANYWRKHNSA 117 +G + +D + + + ST G V ++ M++ A + + Sbjct: 56 AGCLILDIRMPRMNGLELYQELVRRGSTFPVLFMTGHGDVELAVEAMKAGATDFLQKPFR 115 Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLD 177 ++ + + ++L R + + LT E+ I +G+ +IA L Sbjct: 116 EQQLLTALESAHRHGQMRQRLRDSRQQAQDRLDRLTPREYEIACLAAAGHPNKRIAAQLG 175 Query: 178 MDIRSIYAYKQRIEKRMGGKINELFIR 204 + +++++++ + + G +R Sbjct: 176 ISEKTVHSHRLNLMDKTGAGNLADLVR 202 >UniRef50_B4DA09 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DA09_9BACT Length = 249 Score = 85.1 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 57/164 (34%), Gaps = 19/164 (11%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRKHNS 116 VD S+ I +V +R + S A + + Sbjct: 63 HPDLAVVDLSLPSGHGLDLIKEIHARYPEVRLLVFSMHDEQTYGERALLSGAQGYVMKDE 122 Query: 117 A----ISAVIYNDDGLDVANEKIRQLFI-------GRYLSFTGGNTLTQMEFTIMGYMVS 165 + ++A+ G + + G + L+ E ++ +M Sbjct: 123 SPDEVLAAIRKVLSGRISISAHLSARLAEAAASTRGTRARKLPMDRLSNRELEVLEWMGQ 182 Query: 166 GYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 G + IA+ L+ ++I Y+QR+++++ + N I +H+ + Sbjct: 183 GKSVKAIAQRLERSAKTIETYRQRLKEKLNIESNSELI-AHAAR 225 >UniRef50_Q2Y9N3 Two component transcriptional regulator, LuxR family n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y9N3_NITMU Length = 211 Score = 85.1 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 26/159 (16%), Positives = 62/159 (38%), Gaps = 15/159 (9%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNSA- 117 +D S+ + I ++L + R +++ + + NS Sbjct: 50 DVGLLDVSMPGMNGLEVLQRIMDDDPKHRILMLSTYHEDEYAIRAIRAGTSAYLTKNSPT 109 Query: 118 ---ISAVIYNDDGLDVANEKIRQLFI---GRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQ 171 IS + G + K+ + + G + + L+ E ++ + G + + Sbjct: 110 DLLISVIRRLAHGGRYIDPKLAEKLLFDLGPSSTMPRHSALSNRELDVLKLIAVGISLTE 169 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 I++ L + ++I Y+ R+ ++MG + N IR + +H Sbjct: 170 ISQKLKLSAKTISTYRARVLEKMGMQNNAQLIR-YVAEH 207 >UniRef50_C6WV69 Two component transcriptional regulator, LuxR family n=2 Tax=Betaproteobacteria RepID=C6WV69_METML Length = 216 Score = 85.1 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 62/160 (38%), Gaps = 15/160 (9%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNSA 117 + + +D S+ +I S ++L + R ++S A + SA Sbjct: 54 ADVLLLDISLPDRSGMEALKYIKRENSHIAVLMLSMHREDEYAIRALKSGAAGYLCKQSA 113 Query: 118 ----ISAVIYNDDGLDVANEKIRQLF---IGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 ++A+ G ++ ++ IGR L+ E+ + SG + Sbjct: 114 SSELVNAIQTVARGKKYITPEVAEILANQIGRDDQKAPHELLSDREYQTFIMIASGLSVT 173 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +A L + ++++ Y+ R+ ++M K N ++ +H Sbjct: 174 DVANKLSLSVKTVSMYRARLLEKMQLKHNAELT-HYAFKH 212 >UniRef50_C4XMF2 NarL family two-component response regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XMF2_DESMR Length = 218 Score = 85.1 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 24/176 (13%), Positives = 64/176 (36%), Gaps = 24/176 (13%) Query: 50 GVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS--------D 101 E + T +D S+ + + + +GI++VS Sbjct: 37 SYAEALRTAKDC--RPDLAVLDISLPDRSGIQLARELRQMLPS-LGILMVSMHAKVDYVA 93 Query: 102 RNMQSLANYWRKHNSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG-------- 149 ++ A + ++A +S + G + + L+ T Sbjct: 94 EALKVGALGYLTKDAATDNLLSGLRAVAAGQPWLDPTLSVEISRSLLAKTPRAEEESHSA 153 Query: 150 -NTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 ++LT E +M +V G + ++A L++ +++ ++ + +++G + + +R Sbjct: 154 YDSLTPREREVMRLVVEGLSNKEVAAALEISVKTAEHHRGSLMRKLGMQNSVELVR 209 >UniRef50_C0Q9H4 Two component transcriptional regulator (LuxR family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0Q9H4_DESAH Length = 217 Score = 85.1 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 18/163 (11%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQ-------SLANYWRKH--- 114 + + +D S+ + I + L + + + AN + Sbjct: 50 ADLVILDISMPKMSGIEAAKKIRATYPGIKILFLSMHKRNEYLYHAFSAGANGYLLKEDT 109 Query: 115 -NSAISAVIYNDDGLDVAN----EKIRQLFIG--RYLSFTGGNTLTQMEFTIMGYMVSGY 167 ++A+ +G + + + + + S G TL+ E ++ + G Sbjct: 110 DTEILTAMDTILEGKAFLSSIFTKDMPDILTDMVKNGSSFPGGTLSPREEEVLTLLAEGK 169 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 + +IA++L + R++ ++ I KR+ + I+ ++++H Sbjct: 170 SNKKIADILCISTRTVEHHRASIMKRLDLRTLADLIK-YAIRH 211 >UniRef50_B4CYJ9 Two component transcriptional regulator, LuxR family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYJ9_9BACT Length = 219 Score = 85.1 bits (209), Expect = 1e-15, Method: Composition-based stats. Identities = 22/172 (12%), Positives = 59/172 (34%), Gaps = 22/172 (12%) Query: 49 RGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SD 101 +G+ I + +D + + L +VL + Sbjct: 43 KGIAAAIEKAE-----PDVLLLDLMLHGAGGIDLIKQLHTLFPKVRILVLSMHDETVFAP 97 Query: 102 RNMQSLANYWRKHNSA----ISAVIYNDDGLDVANEKI------RQLFIGRYLSFTGGNT 151 R +++ A + A ++A+ G + K+ R + + + G Sbjct: 98 RALRAGALGYVMKQEASGQVLAALRAVVVGELHVSRKVGITLMQRAIKMPELSAADGVAK 157 Query: 152 LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 L+ E + + +G +IA L + I+++ +++ I+ ++ + + Sbjct: 158 LSDRELHVFELIGAGIPTREIATRLGISIKTVETHRENIKHKLELQSGTELV 209 >UniRef50_C5V5K1 Two component transcriptional regulator, LuxR family n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V5K1_9PROT Length = 211 Score = 85.1 bits (209), Expect = 2e-15, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 56/159 (35%), Gaps = 15/159 (9%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWR----KH 114 + +D + + I + ++L V R +Q+ A+ + Sbjct: 50 DLVLLDLDMPGENGANLIERIRRHYPDLLILILSAHDEIKVVSRAVQAGASGYICKDCSP 109 Query: 115 NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTL---TQMEFTIMGYMVSGYNPYQ 171 + + A+ + + + N+L + E I +V G + Sbjct: 110 KTLLEAIHKVVATGKYLSPLMAEELAYTSAIPQANNSLALLSSREQEIFRLLVEGLSNDD 169 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 I+ L + R++ A+K + ++G K + +S+QH Sbjct: 170 ISRQLFISDRTVSAHKINLLNKLGLKNVVELV-HYSIQH 207 >UniRef50_C1TQ52 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQ52_9BACT Length = 214 Score = 85.1 bits (209), Expect = 2e-15, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 53/138 (38%), Gaps = 15/138 (10%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKI- 135 L ++ ++ ++ + L+ D L + AV DG I Sbjct: 81 LSMYADRSFVSEMLKVGALGFLLKDCASTEL----------VEAVRKVMDGEIYLGPSIS 130 Query: 136 ---RQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEK 192 +L++ LT E I+ + G ++AE L + I+++ ++Q I Sbjct: 131 HIVAKLYVSSLHDPDDIEPLTPREKEILMLLAEGNTNREVAERLHLSIKTVGTHRQHIMN 190 Query: 193 RMGGKINELFIRSHSVQH 210 ++ K ++ +++++ Sbjct: 191 KLKLKNLADLVK-YAIRN 207 >UniRef50_Q3JL34 DNA-binding response regulator n=30 Tax=pseudomallei group RepID=Q3JL34_BURP1 Length = 223 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 61/177 (34%), Gaps = 28/177 (15%) Query: 49 RGVVEGILTKNHNARL-SGYIFVDFSVSFLRLFLEKDWIDYLAS-----TDMGIVLVSDR 102 G + + R + +D + +D + + + V+ + Sbjct: 37 DGAADMAEASDRCGRDRPDLVLLDVMLPG------EDPLPAMGEILRAHPGLRFVVFTAL 90 Query: 103 NMQSLA---------NYWRKHNSA---ISAVIYNDDGLDVANEKIRQL----FIGRYLSF 146 ++ A Y K S + A+ G + + + G Sbjct: 91 GSEARAADAIRFGASGYLLKWCSPDGIVQAIRRVMAGRVHIDPSLDEARVASAAGGRTLA 150 Query: 147 TGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 + + LT+ E ++ + G +IA +L++ +++ ++QR+ +++G + I Sbjct: 151 SPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVI 207 >UniRef50_C8WT63 Two component transcriptional regulator, LuxR family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WT63_ALIAD Length = 221 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 27/190 (14%), Positives = 66/190 (34%), Gaps = 31/190 (16%) Query: 37 FCMWPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGI 96 +W E + + +D ++ + + LA + Sbjct: 35 VAVWANG--------HEVLRDVEQ--VRPDVLLLDITMPEVDGLCVLKAVPLLAWRPKIV 84 Query: 97 VL-------VSDRNMQSLANYWRKHNSA----ISAVIYNDDGLDVANEKIRQLFIGRYLS 145 VL V +++ + + ++ + A+ +G + + ++ + +G Sbjct: 85 VLTMHEQSPVVLEAVRAGVSGYIVKDAPMEDLLRAIREAHEGRAMVHPQVMRAVLGEIER 144 Query: 146 FTG-----GNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINE 200 + + LT EF ++ M +G + QIAE L + +++ + I ++ Sbjct: 145 YAKPSDGWKDLLTAREFDVLCQMAAGKSNEQIAESLHITLKTAKNHVSHILAKLNVSD-- 202 Query: 201 LFIRSHSVQH 210 RS +V H Sbjct: 203 ---RSQAVLH 209 >UniRef50_B8CN77 Nitrate/nitrite DNA-binding response regulator, putative n=2 Tax=Shewanella RepID=B8CN77_SHEPW Length = 206 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 67/197 (34%), Gaps = 30/197 (15%) Query: 42 EESSYFNRGVVEGILTKNHNARLS-----------------GYIFVDFSVSFLRLFLEKD 84 ++ F G+ + + L+ + D ++ + + Sbjct: 8 DDHPLFREGLRYRLSLDSDIEVLAEADNGQQALEILNKMPVDLVLTDINMPQMDGMYLLE 67 Query: 85 WIDYLASTDMGIVLVSDRN-------MQSLANYWRKH----NSAISAVIYNDDGLDVANE 133 I + ++L N M+ A+ + I A+ G + Sbjct: 68 LIKEQELSCKVVMLSMHDNKEYIMATMRYGADGYILKDVPGKELIEAIKKVAAGKRYFSA 127 Query: 134 KIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKR 193 + S +TQ E ++ + G N +IA+ +D+ +R++ +K+ I+++ Sbjct: 128 DVINTLSQELASGKQA-LVTQREQLVLRLISLGMNNKRIAQEMDVSVRTVETHKRNIKQK 186 Query: 194 MGGKINELFIRSHSVQH 210 + +R +++ H Sbjct: 187 LMIDSTAGLVR-YAIDH 202 >UniRef50_C1TL94 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TL94_9BACT Length = 215 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 56/158 (35%), Gaps = 17/158 (10%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV--SDRNM-----QSLANYWRKHN- 115 + +D ++ + I + L +D+ + ++ A+ + Sbjct: 47 HPDVVVMDVTMPKMNGIEASRRIKSSLGDVKILALSMHADKRLIAEILKAGASGYALKEG 106 Query: 116 ---SAISAVIYNDDGLDVANEKIRQLFIGRYLS------FTGGNTLTQMEFTIMGYMVSG 166 I A+ G + KI + I YL + + L+ E ++ + G Sbjct: 107 SSEELIRAIHIVSSGETYLSPKIASILIKDYLKLLDTAVPSRASLLSDREREVLALLAKG 166 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 + ++A L + ++ +++RI +++ IR Sbjct: 167 SSTKEVASSLHISKNTVDTHRRRIMEKLDCGNIAELIR 204 >UniRef50_A3Z7P9 Two-component response regulator, CheY-like receiver and wHTH DNA-binding domains n=1 Tax=Synechococcus sp. RS9917 RepID=A3Z7P9_9SYNE Length = 207 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 58/144 (40%), Gaps = 11/144 (7%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNS---AISAV 121 + +D S+ + + + IVL + A+ + S + AV Sbjct: 63 PDLLILDLSLPDQGGEVVAEALVEFHPEARLIVLSAQ------ASSFVCPASLQPMLHAV 116 Query: 122 IYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIR 181 + + D +I +L R + LT+ E ++ + +G + QIA+ + + + Sbjct: 117 VDKIEAYDCLGAEIAELL--RAKAPAPLAKLTRREREVLSGIGAGLSNQQIADRMHLSVH 174 Query: 182 SIYAYKQRIEKRMGGKINELFIRS 205 ++ +++ + ++G K EL + Sbjct: 175 TVETHRRNLSGKLGFKGAELVRYA 198 >UniRef50_B9XAW3 Two component transcriptional regulator, LuxR family n=1 Tax=bacterium Ellin514 RepID=B9XAW3_9BACT Length = 224 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 62/163 (38%), Gaps = 18/163 (11%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHN 115 +D ++ I + + + L +R +++ A + N Sbjct: 57 LKPDLAIIDIALGSSSGIEVIKNIHSRWNNQLLMALSMHEESVYGERALRAGARGYVMKN 116 Query: 116 S----AISAVIYNDDGLDVANEKIRQLFIGRYLSFT------GGNTLTQMEFTIMGYMVS 165 + A+ G ++++R L + ++L+ G L+ E + + S Sbjct: 117 ETTEEIMRAIREVLRGEVYLSKQMRSLVVQKFLNGEPAHGHFGVEQLSDRELEVFQLIGS 176 Query: 166 GYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSV 208 G QIA L + I+++ Y+ I++++ + +R H++ Sbjct: 177 GRRTGQIAAELHLSIKTVETYRAHIKEKLMLRNGMELVR-HAI 218 >UniRef50_A0M4P6 Two-component system response regulator n=5 Tax=Flavobacteriales RepID=A0M4P6_GRAFK Length = 205 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 55/141 (39%), Gaps = 13/141 (9%) Query: 69 FVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGL 128 F + + +F + + + ++ + +++ L + A+ +G Sbjct: 73 FPNIKIIAFSMFDQDKAVQQMLEAGASGYILKNSSLKEL----------LYAIRKVHEGE 122 Query: 129 DVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQ 188 + I + +S LT + I+ + G +IA+ L + ++ +++ Sbjct: 123 HYYDPNIT--VKQKSVSPKSKAVLTGRQREILKLIGQGRTNQEIADQLFIGKTTVETHRK 180 Query: 189 RIEKRMGGKINELFIRSHSVQ 209 + +++G + +R ++++ Sbjct: 181 NMIRKLGLQGAGELLR-YALE 200 >UniRef50_A1K960 Probable transcriptional regulator, LuxR family n=1 Tax=Azoarcus sp. BH72 RepID=A1K960_AZOSB Length = 209 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 56/159 (35%), Gaps = 15/159 (9%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKHNSA- 117 + +D ++ L I ++ + + + A+ + +S Sbjct: 49 DVVLLDITLPDLNGLEVLKRIKRSKPDLPVLIFSMFSEDEFALPALNAGASGYLNKDSPP 108 Query: 118 ---ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG---NTLTQMEFTIMGYMVSGYNPYQ 171 ++A+ G + + + + +S L+ E ++ + G + Sbjct: 109 AQILAALHTVVAGARYVSPSLAERLLAGTMSPGKRLPHENLSPREMAVLLLLSKGVPLTR 168 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 I E + +++I Y+ RI +++ N R + +QH Sbjct: 169 IGEQFHLSVKTISTYRARILEKLDLASNAEITR-YVLQH 206 >UniRef50_A8VTE0 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VTE0_9BACI Length = 219 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 32/198 (16%), Positives = 69/198 (34%), Gaps = 27/198 (13%) Query: 32 CANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLAS 91 C + + + E +E N I +D S+ L I Sbjct: 23 CTEADYHVIAEADD--GESAIEMAAEAN-----PDIIIMDISMPGLDGIEVTREIKRKIP 75 Query: 92 TDMGIVLV--SDRN-----MQSLANYWRKH----NSAISAVIYNDDGLDVANEKIRQLF- 139 ++L +D + + A+ + + AV +G + Sbjct: 76 DIRILMLTMYADEAFLKESLDAGASGYVLKRAVDTELVHAVKLVMNGEHYIYPTLIPKLY 135 Query: 140 -----IGRYLSFTGGNT--LTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEK 192 +S L+Q E ++ Y+ GY +I+ L + I+++ YK+R+ + Sbjct: 136 HANQPQQDAVSPDSNQAVELSQREQEVLKYIALGYTQKEISTELFISIKTVDTYKKRVME 195 Query: 193 RMGGKINELFIRSHSVQH 210 ++G K +R ++++H Sbjct: 196 KIGSKKKSALVR-YALKH 212 >UniRef50_B9E7V9 Two-component response regulator n=65 Tax=Staphylococcaceae RepID=B9E7V9_MACCJ Length = 210 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 53/153 (34%), Gaps = 11/153 (7%) Query: 55 ILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS--DRN-----MQSL 107 +L +L I +D + L I +VL S D M + Sbjct: 41 LLEHLDETQLPDLIIMDLVMPELNGIEATRRIKAKYPDVKVLVLSSFIDEEHVLGVMDAG 100 Query: 108 ANYWRKHNSAISAVI----YNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYM 163 A+ + +S A+I G + + + ++ N L++ E ++ M Sbjct: 101 ADGYEMKDSEPKALINTIKQIAAGEQIFHPDVMKVRKSGMNLAHLRNPLSKRELEVLKAM 160 Query: 164 VSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGG 196 G +IAE L + +++ + I ++ Sbjct: 161 SEGLTNKEIAEKLFVSEKTVKTHVSHIFAKLEV 193 >UniRef50_UPI0001699909 response regulator n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699909 Length = 181 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 57/160 (35%), Gaps = 15/160 (9%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKHN-- 115 + +D ++ + + +A + L R + A + Sbjct: 13 PDVVLMDVNMPGIGGIEATRRLLRIAPDLKVVALTMLDNEPFPARLNEVGAMGYLTKGCP 72 Query: 116 --SAISAVIYNDDGLDVANEKIRQ---LFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 I A+ G + + + L + S T L+ E +M ++ G Sbjct: 73 ADEMIQAIRSVFRGQPFVSSDVARKHILTDWKRHSATPFQGLSSRETQVMLMILEGQRNQ 132 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +I++ L + +++ Y+QRI +++ + + R + +H Sbjct: 133 EISDGLSLSPKTVSTYRQRIYEKLDVRNDVELTRL-AYRH 171 >UniRef50_C7PRP4 Two component transcriptional regulator, LuxR family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PRP4_CHIPD Length = 208 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 61/161 (37%), Gaps = 13/161 (8%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH 114 I +D + + I T M +VL DR +QS A + + Sbjct: 45 HNSVDIIIIDTCLPDIDSAALCANIRMEYPTVMVLVLSFLKEERYIDRLLQSGAGGYVLN 104 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYL-SFTGGNTLTQMEFTIMGYMVSGYNP 169 + + AV G + I+Q + LT+ E ++ + G Sbjct: 105 TADKDELLFAVHSVYAGGVYLSPVIKQAMSSERVGLQKNFPPLTRREKEVLSLISEGNTN 164 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +IAE L + ++ ++++++ ++ K + I+ ++V + Sbjct: 165 AEIAEKLFISADTVNSHRKKLLAKLEVKNTAMLIK-YAVDN 204 >UniRef50_A1TVD4 Two component transcriptional regulator, LuxR family n=9 Tax=Burkholderiales RepID=A1TVD4_ACIAC Length = 209 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 21/159 (13%), Positives = 54/159 (33%), Gaps = 15/159 (9%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNSA- 117 + +D ++ + S +V+ + R +++ A + Sbjct: 49 DVLLLDLNMPGRSGLEVLSSLKETDSAIKVLVVSMYPEDQYALRCLRAGAQGYANKAGDP 108 Query: 118 ---ISAVIYNDDGLDVANEKIRQLFIGRYLSFTG---GNTLTQMEFTIMGYMVSGYNPYQ 171 I AV G ++ Q+ L++ E + + SG Sbjct: 109 MELIEAVRTVMKGRKYLTPEVAQMLADSLAQPAPELPHEALSERELQTLVKIASGKRLSD 168 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 IAE L + +++ Y+ R+ +++ N +++++ Sbjct: 169 IAEELMLSPKTVSVYRSRVLEKLKLSNNAELTV-YAIRN 206 >UniRef50_B2STP5 Transcriptional regulator LuxR/uhpA family n=22 Tax=Xanthomonadaceae RepID=B2STP5_XANOP Length = 215 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 15/156 (9%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS--------DRNMQSLANYWRKH 114 + D + + + I +++VS R +++ A+ + Sbjct: 47 LKPDIVLCDLHLPGVSGLEITERIVK-GDYGTRVIIVSVLEDGPLPKRLLEAGASGYVGK 105 Query: 115 ----NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG--NTLTQMEFTIMGYMVSGYN 168 + + AV G I Q L G + L+ E + + G Sbjct: 106 GGDAHELLRAVREVALGRRYLGNTIAQNLALSNLEGGGSPFDALSPRELEVALLLTQGLR 165 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 IA+ L++ ++I +K R+ +++G + N R Sbjct: 166 QEDIAKRLNLSAKTINTHKARLFEKVGIQDNIALAR 201 >UniRef50_Q47I89 Two component transcriptional regulator, LuxR family n=3 Tax=Betaproteobacteria RepID=Q47I89_DECAR Length = 203 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 57/149 (38%), Gaps = 13/149 (8%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYND 125 G + +D + + ++ + + T +V+ +++S ++ + + Sbjct: 52 GCLLIDIRMPVMDGLSLQERLIEMGCTLPVVVITGHGDVESARRAFKSNAIDFLEKPIDH 111 Query: 126 DGLDVANEKIRQLFIGRYLSFTGGN----------TLTQMEFTIMGYMVSGYNPYQIAEV 175 D E I Q F + L + LT E +M +V GY+ +IAE Sbjct: 112 D---KMLEAIEQAFNSQSLMQDRKSASEKANYLLGQLTPREQEVMNLVVGGYHNREIAEK 168 Query: 176 LDMDIRSIYAYKQRIEKRMGGKINELFIR 204 L + +R++ +K + ++ +R Sbjct: 169 LGISVRTVEVHKAHVMSKLDVDSVADLVR 197 >UniRef50_C4TR02 Histidine kinase n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TR02_YERKR Length = 477 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 16/152 (10%) Query: 67 YIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSD-------RNMQSLANYWRKHNSAIS 119 + +D + F + T + L + R +Q+ AN N IS Sbjct: 51 LVIIDIELPNFDGFSLLKKLQQRGFTGKSLFLSAKNDQSFAVRALQAGANGLISKNKDIS 110 Query: 120 AVIYNDD----GLDVANEKIRQLFIGRYLSFT---GGNTLTQMEFTIMGYMVSGYNPYQI 172 +++ G + G+ L + L+ GY+ +G QI Sbjct: 111 EILFAVQRILRGYSFFPSETLTQLAGQPLRHELINRTHFLSAWGINDFGYLTNGLVNKQI 170 Query: 173 AEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 + + + +++ YK I ++ ++N + R Sbjct: 171 TDEICISNKTVSTYKMHILTKL--RLNSVIRR 200 >UniRef50_B9Z8S5 Two component transcriptional regulator, LuxR family n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z8S5_9NEIS Length = 208 Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 9/146 (6%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS-------DRNMQSLA-NYWRKHNS 116 + VD +S + + + + I+L + ++ A ++ K Sbjct: 48 FNALIVDLRLSGISGIVLLERLAEHPYCPPVIMLTAHGDVPHAVAALKLGAIDFMEKPFD 107 Query: 117 AISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVL 176 + D L ++ R F LT+ E +M +++G QIA+ L Sbjct: 108 DGRLLAMVDQALLRDQQE-RDRFGRLSRLNQSLALLTEREREVMQLILAGKLNKQIADEL 166 Query: 177 DMDIRSIYAYKQRIEKRMGGKINELF 202 + ++++ ++ R+ +MG K Sbjct: 167 AISMKTVEVHRSRVFDKMGVKSAVEL 192 >UniRef50_A9WKI8 Response regulator receiver n=3 Tax=Chloroflexaceae RepID=A9WKI8_CHLAA Length = 209 Score = 84.4 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 22/162 (13%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLAS--TDMGIVLVSDRN--------MQSLANYWRKH 114 + I +D + + L I+++S +++ A + + Sbjct: 50 ADVIVMDVLMPG--GIDGIETTRQLKRLIPHTHIIILSGYADDARVIGALRAGAITYIEK 107 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 S + A+ G V + Q + + +TLT+ E ++ + G Sbjct: 108 ESQPEQLLEAIRGAMAGKAVLAPALMQRIL-EAQTSKAADTLTEREREVLKLVAEGLTNA 166 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMG--GKINELFIRSHSVQH 210 +IA L + ++ + I +++G + ++++H Sbjct: 167 EIASRLTVSEETVKTHVASILRKLGLAHRTQAAI---YALRH 205 >UniRef50_D0L5W2 Response regulator receiver n=36 Tax=Actinomycetales RepID=D0L5W2_GORB4 Length = 216 Score = 84.4 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 17/162 (10%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDR-------NMQSLANYWRKHNSA 117 + +D + + + +VL + +++ A + ++ Sbjct: 51 PDVVLMDMQMPDGTGATATAELLKVCPEAHVLVLSASDERDDVLDAIKAGATGYLVKSAQ 110 Query: 118 ----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN-----TLTQMEFTIMGYMVSGYN 168 ++AV DG V + L +G Y LT+ E ++ + G + Sbjct: 111 RSELVAAVHATADGQAVFTPGLAGLVLGEYRRIARSPGPETPVLTERETQVLREVAKGLS 170 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 QIA L + R++ + +++ R ++++H Sbjct: 171 SRQIANRLAISPRTVENHVGATLRKLQLANRVELTR-YAIEH 211 >UniRef50_D1Y661 DNA-binding response regulator, LuxR family n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y661_9BACT Length = 216 Score = 84.4 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 20/165 (12%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS--------DRNMQSLANYWRKH 114 +D ++ L I S ++++S ++++ A + Sbjct: 47 LQPDVALMDMTMPRLNGIQATQKI-AAGSPGTKVLVLSMHGDKNLIVESLKAGARGYVLK 105 Query: 115 ----NSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGN------TLTQMEFTIMGYMV 164 A+ +G I IG YL T L++ E ++ +V Sbjct: 106 ECSSQELCLAIQTVANGQYYLTPAILSTLIGDYLRLTENEEQGSDCPLSERELDVLKLLV 165 Query: 165 SGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 G N QIAE L + ++ +++ I ++G R ++++ Sbjct: 166 KGCNAKQIAEQLSISKNTVDTHRRHILDKLGCNSMAELTR-YAIR 209 >UniRef50_Q31FU6 Two component transcriptional regulator, LuxR family n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31FU6_THICR Length = 232 Score = 84.4 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 55/164 (33%), Gaps = 25/164 (15%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS-----------DRNMQSLANYWRK 113 + +D S+ L + + IVL + D ++ LA Sbjct: 52 PDILIIDLSMPKLSGLAVITQLKKQKNPIKIIVLTAAEAPNVWKEVLDLGVEGLALKSVS 111 Query: 114 HNSAISAVIYNDDGLDVANEKIRQLF-------IGRY-------LSFTGGNTLTQMEFTI 159 +S + + + +I+ G+ + L+ E + Sbjct: 112 KAELVSGIKSVIADENFIHSEIQPALDAYLAELEGQKTPEEDSGDKPSRPKKLSVREKQV 171 Query: 160 MGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 + + GY IA++L++ R++ +++ I ++G + + Sbjct: 172 IKLVAEGYKTKDIADMLEISDRTVSKHRENIMTKLGMTASAELV 215 >UniRef50_C7I0E4 Two component transcriptional regulator, LuxR family n=2 Tax=Thiomonas intermedia K12 RepID=C7I0E4_THIIN Length = 226 Score = 84.4 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 19/154 (12%), Positives = 51/154 (33%), Gaps = 15/154 (9%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKHNSA- 117 + +D S+ I + ++L + R ++ A + + Sbjct: 64 SVVLLDLSMPRGNGLDLLKRIKLMHPDLPVLILSMHPEQQFALRALRGGAAGYLTKGCSP 123 Query: 118 ---ISAVIYNDDGLDV----ANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 + A+ G E++ + L+ E + +V G + Sbjct: 124 DVLVEAIQKVVHGGRYLTPGVAEQLANYMNEGEAAEEPHARLSDREMQVFMRLVEGKSVN 183 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 Q+A+ L + +++ +K R+ ++ + +R Sbjct: 184 QVADELHISCKTVSTHKTRLMHKLALDNDADLVR 217 >UniRef50_Q39TN7 Two component transcriptional regulator, LuxR family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TN7_GEOMG Length = 210 Score = 84.4 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 55/157 (35%), Gaps = 14/157 (8%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKH 114 A + +D ++ + + +V+ + R +S A + Sbjct: 46 ANDYDMVILDITMPGRNGLDVLTEMKSIKPKLPVLVMSMHPEEQYALRAYKSGAAGYLNK 105 Query: 115 ----NSAISAVIYNDDGLDVANEKIRQLFIG---RYLSFTGGNTLTQMEFTIMGYMVSGY 167 N + A+ G + + + + + +L+ E+ +M + SG Sbjct: 106 GSASNELLDALHKISMGKKYVSSALAESLVSGLSDHNQQDLLQSLSNREYQVMSMIASGK 165 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 +IA L + ++++ Y+ I +++ K N R Sbjct: 166 TVGKIATELSLSVKTVSTYRAHILRKLNMKNNAELTR 202 >UniRef50_A6Q7X9 Two-component response regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q7X9_SULNB Length = 223 Score = 84.4 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 15/155 (9%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHN-- 115 + +D ++ + I L + +VL + R ++ A+ + + Sbjct: 48 PDLLILDLNLGDTNGLSTLENISSLYPSVPILVLSAYPEEIYALRTFKNGASGYLNKSIV 107 Query: 116 --SAISAVIYNDDGLDVANEKIRQLFIGRYLSFTG----GNTLTQMEFTIMGYMVSGYNP 169 I A+ G + K ++ L++ EF ++ + +G P Sbjct: 108 SSELIDAITTIMRGKKYISNKFEEILPLGTDLGKEEKDLVEILSKREFEVLNLIAAGQAP 167 Query: 170 YQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 +IAE +++ ++I Y+ RI +++ + R Sbjct: 168 KEIAENMNVSPKTISTYRTRIMEKLSFETTSQLQR 202 >UniRef50_C6QBW6 Two component transcriptional regulator, LuxR family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QBW6_9RHIZ Length = 207 Score = 84.4 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 60/151 (39%), Gaps = 8/151 (5%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDY-------LASTDMGIVLVSDRNMQSLANYWRKHNSA 117 G + +D + + ++ ++ + T G V ++ R M++ A + + Sbjct: 55 RGCLILDIRMPGMSGLELQEKLNAAGALIPIIIVTGHGDVSIAVRAMKAGAVEFLQKPFT 114 Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLD 177 ++ I R S +LT E ++G M +G IA +L+ Sbjct: 115 DQLLLDTVQSALTKYSAIWDQEARREKSNKSLASLTSREREVLGLMRAGKPNKVIASILN 174 Query: 178 MDIRSIYAYKQRIEKRMGGK-INELFIRSHS 207 + +R++ ++ I + G + + ELF HS Sbjct: 175 ISVRTVEGHRATIMSKTGSRSLGELFEMLHS 205 >UniRef50_B5JP13 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JP13_9BACT Length = 211 Score = 84.4 bits (207), Expect = 3e-15, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 53/156 (33%), Gaps = 14/156 (8%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHN 115 + +D + L + I I++ + ++ N N Sbjct: 45 LQPDLVILDLKIKKLGGLTVFNRIKDRTPECKVILVSAHFTPEIVKNTVERGVNGLVTKN 104 Query: 116 SAIS----AVIYNDDGLDVANE---KIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYN 168 S+I A+ G + K+ + I LT E ++ + GY+ Sbjct: 105 SSIESLKDAIGQILKGAVYYSPEAYKLLRQPITNKDYNDSLKMLTPRETDVLQMVGEGYS 164 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 +IA ++ +R+I A++ I +++ + R Sbjct: 165 SKEIARSFNLSVRTIDAHRSNIMRKLNLRGATDMTR 200 >UniRef50_Q15U24 Two component transcriptional regulator, LuxR family n=4 Tax=Gammaproteobacteria RepID=Q15U24_PSEA6 Length = 212 Score = 84.4 bits (207), Expect = 3e-15, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 57/155 (36%), Gaps = 7/155 (4%) Query: 56 LTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLA-------STDMGIVLVSDRNMQSLA 108 + + + LSG I +D + + + ++ L T G V ++ M+ A Sbjct: 51 FSSDDISMLSGCIVLDIRMPGMSGMECQQRLEALKCPLPIIFITGHGDVPMAVEAMKKGA 110 Query: 109 NYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYN 168 + + ++ N +Q + +LT+ E +M +++G Sbjct: 111 IEFIQKPFREQVLLDCIQHALQVNRDNQQRTLHALEVEKRCQSLTERETEVMHRVIAGQA 170 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 IA L++ R++ ++ + +M + + Sbjct: 171 NKVIASELNLSQRTVEIHRANVMDKMQVRSLAELV 205 >UniRef50_A9IGY8 Two-component response regulator n=3 Tax=Burkholderiales RepID=A9IGY8_BORPD Length = 210 Score = 84.4 bits (207), Expect = 3e-15, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 14/176 (7%) Query: 44 SSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLAS---------TDM 94 SY G + AR + +D ++ + + + T Sbjct: 29 DSYAGAGEFLQAWDADGLAREPACLLLDVRMAGMSGLELFETLKERGLASHHAVIFLTGH 88 Query: 95 GIVLVSDRNMQSLANYWR-KHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLT 153 G + ++ ++ A Y+ K S V + L + L+ + LT Sbjct: 89 GDIPMAVEALRGGAYYFLEKPYSGNQLVDRVLESLAHVDAASAAP----GLAAAALDVLT 144 Query: 154 QMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 E I ++V+G +IA+ L++ +R++ ++ R+ ++ K + + Q Sbjct: 145 PRERDIASHIVAGRTNREIADALNISVRTVEVHRARLFAKLEVKSAVGLAQLWAQQ 200 >UniRef50_C8Q9F1 Two component transcriptional regulator, LuxR family n=2 Tax=Enterobacteriaceae RepID=C8Q9F1_9ENTR Length = 206 Score = 84.4 bits (207), Expect = 3e-15, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 59/149 (39%), Gaps = 9/149 (6%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLAS-------TDMGIVLVSDRNMQSLA-NYWRKHNS 116 G + +D ++ F + ++ T G + V+ R M++ A + K Sbjct: 47 PGCLILDINMPGADGFAVVNALNARGYAIPTIFLTGFGTIPVTVRAMKTGACEFLTKPVD 106 Query: 117 AISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVL 176 + + L +A E + +Y + +LT E +M +SG QIA + Sbjct: 107 PEQLLQAVAEALQMAEENLASSQE-KYDITSRHLSLTPRESEVMLLAISGLLNKQIAAEM 165 Query: 177 DMDIRSIYAYKQRIEKRMGGKINELFIRS 205 + + +K+R+ ++M + +R+ Sbjct: 166 GISEITAKVHKRRVMEKMNVRSLSDLVRA 194 >UniRef50_C5S952 Two component transcriptional regulator, LuxR family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S952_CHRVI Length = 208 Score = 84.4 bits (207), Expect = 3e-15, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 53/149 (35%), Gaps = 7/149 (4%) Query: 56 LTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDY-------LASTDMGIVLVSDRNMQSLA 108 + G + +D + + + + + + G + + R++ A Sbjct: 40 FLAKLDTLECGCLILDLRMPDMDGLALLETLRSRWMLLPVIVVSAHGEIPTAVRSLHLGA 99 Query: 109 NYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYN 168 + + ++ AN + R++F +LT E +M +V G Sbjct: 100 IDFLEKPVNHQRLLERVRAALEANLEFRRVFGSPRQLAERLASLTPREREVMEALVQGKA 159 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGK 197 IA L IR+I +++ + ++G + Sbjct: 160 NKVIAADLGASIRTIESHRANLMHKLGVR 188 >UniRef50_C3BGJ6 Two component transcriptional regulator, LuxR n=5 Tax=Firmicutes RepID=C3BGJ6_9BACI Length = 201 Score = 84.4 bits (207), Expect = 3e-15, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 62/166 (37%), Gaps = 16/166 (9%) Query: 60 HNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN-------MQSLANYWR 112 ++ + +D S+ L I IVL + M + A+ + Sbjct: 31 YDILRPDILILDISLPRLDGIQVLTEIKLRYEQAKVIVLTMHEDEDYVTLIMNAGASGYV 90 Query: 113 KHNSA----ISAVIYNDDGLDVANEK----IRQLFIGRYLSFTGGNTLTQMEFTIMGYMV 164 + +A+ DG K + + S L+ E ++ ++V Sbjct: 91 PKAAVDEELYTAIDSVMDGYLYLRPKEISTMLKRLQNETESRNPYVILSPREREVLQFLV 150 Query: 165 SGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 G++ +IA+ L + I+++ +K R+ ++ ++ +++++ Sbjct: 151 KGFSLSEIAQELTISIKTVDTHKTRMLNKLNLSKKSELVQ-YAIKY 195 >UniRef50_D2PS71 Two component transcriptional regulator, LuxR family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PS71_9ACTO Length = 220 Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 51/158 (32%), Gaps = 17/158 (10%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKHN 115 + +D + + +VL + + A + + Sbjct: 49 LHPDVVLMDIRMPGTDGLTATRVVCARLPATKVLVLTTFDLDEYVYEALGAGATGFLLKS 108 Query: 116 SAI----SAVIYNDDGLDVANEKIRQLFIGR------YLSFTGGNTLTQMEFTIMGYMVS 165 + + A+ +G + + +I + I + L+ E ++G ++ Sbjct: 109 APVTDILRAIHTVHEGQAMLSPEITRRLIAEVSRGRTRRTPEAFEQLSPRELELVGAVLR 168 Query: 166 GYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 G + ++A L + + ++ Y RI ++ + + Sbjct: 169 GLSNEELAAELFLSLSTVKTYLSRIFSKLDVRDRTQLV 206 >UniRef50_Q2W107 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=2 Tax=Magnetospirillum RepID=Q2W107_MAGSA Length = 214 Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 20/160 (12%), Positives = 59/160 (36%), Gaps = 17/160 (10%) Query: 65 SGYIFVDFSVSFLRLFLEKDW-------IDYLASTDMGIVLVSDRNMQSLANYWRKHNSA 117 + +D + L + +A + + + +++ A+ + +S Sbjct: 49 PDVLVLDIGLPDLNGIEVARTAIRRHPDLRIVALSGFADRIYIEEMLKAGAHGYVVKSSG 108 Query: 118 ----ISAVIYNDDGLDVANEK-----IRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYN 168 +SA+ G + + +R + + L + E ++ + G Sbjct: 109 ADELVSAIRAVAGGSSFLSPEATQVMLRHIQSDADTVAPPPSVLGKREREVLVLLAGGLR 168 Query: 169 PYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSV 208 +IA L + + ++ +++ I++++G IR ++V Sbjct: 169 SAEIAASLGIAVGTVEVHRRNIKQKLGMNRTADLIR-YAV 207 >UniRef50_C5S6K7 Two component transcriptional regulator, LuxR family n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S6K7_CHRVI Length = 209 Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 7/147 (4%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLAS-------TDMGIVLVSDRNMQSLANYWRKHNSA 117 G + +D + + + + + + G V + R +Q A + + ++ Sbjct: 49 RGCLVLDQRMPDMTGLDLQSELLERGALLPIIFLSAFGDVPTTVRAIQGGAIDFLEKPAS 108 Query: 118 ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLD 177 ++ + + + R+ Y LT E ++ G IA L Sbjct: 109 TEQLLQRIEDAFAEDRRRREEAATEYDIRERFRQLTPREHEVLTLTTRGLTNKDIARQLG 168 Query: 178 MDIRSIYAYKQRIEKRMGGKINELFIR 204 + R++ ++ R+ ++MG R Sbjct: 169 ISPRTVENHRARMMEKMGAGNLAELCR 195 >UniRef50_UPI00016C4750 two-component transcriptional regulator, LuxR family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4750 Length = 216 Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 21/153 (13%), Positives = 50/153 (32%), Gaps = 12/153 (7%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDR-------NMQSLANYWRKH 114 + ++ + L + + +VL + + + Sbjct: 42 ELNPDLVVMEAVLPGLGGAYVAARLRAVKDQ-SVLVLTASEHAGMARLFLGMGVRGYVLK 100 Query: 115 NSAIS----AVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 +S+ AV G + I G G L + E T++ + GY+ Sbjct: 101 SSSTENVEEAVRTIAAGGRYFSPGIIGHSSGEGPRGPSGMALVEREVTVLVLVARGYSNK 160 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 +I+ L ++S+ +K+R +R+ + + Sbjct: 161 EISVKLMCSVKSVEIHKRRAMRRLELRSRVDLV 193 >UniRef50_B1Y741 Two component transcriptional regulator, LuxR family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y741_LEPCP Length = 205 Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 64/159 (40%), Gaps = 15/159 (9%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHN--- 115 +DFS+ + + +VL ++ +++ A+ + Sbjct: 44 DLALLDFSMPGCSGLSLIEHVRRDFPQRPVLVLSVHDEQLLAPHVLRAGASGYLCKECAT 103 Query: 116 -SAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGG---NTLTQMEFTIMGYMVSGYNPYQ 171 I A+ G + + Q + +GG L+ E+ +M + SG + + Sbjct: 104 EQLIQAIRAVTAGGTHVSAPVAQRLAWQVAIESGGAPHERLSDREYRVMWLLSSGRHIVE 163 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 IA+ L + R++ +Y+ R+ +++G + S++V+H Sbjct: 164 IAQELHLRPRTVASYRHRVLRKLGLHDTAELV-SYAVRH 201 >UniRef50_A4VZN8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=52 Tax=Bacilli RepID=A4VZN8_STRS2 Length = 213 Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 54/158 (34%), Gaps = 12/158 (7%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN-------MQSLANYWRKHNS 116 + +D + + + ++L S + +++ A + S Sbjct: 49 KPDVVVMDLVMPKMTGVEATLALLKEWPQAQIVILTSYLDNEKIYPVLEAGARGYMLKTS 108 Query: 117 A----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQI 172 + ++A+ G ++ + + LT E I+ + GY+ +I Sbjct: 109 SADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTAREREILTLLAKGYDNQRI 168 Query: 173 AEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 A+ + ++++ + I ++ + ++ QH Sbjct: 169 ADESFISLKTVKTHVSNILSKLAVSDRTQAVV-YAFQH 205 >UniRef50_D0LE76 Response regulator receiver n=2 Tax=Actinomycetales RepID=D0LE76_GORB4 Length = 228 Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 17/163 (10%) Query: 64 LSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS-------DRNMQSLANYWRKHNS 116 + +D + + + L +VL + +++ A + +S Sbjct: 59 SPDVVVMDLRMRNVDGITATSMLAALNDPPPVLVLTTFDDDKLLSGALRAGAAGFILKDS 118 Query: 117 A----ISAVIYNDDGLDVANEKIR-QLFIGRYLSFTG----GNTLTQMEFTIMGYMVSGY 167 I AV + + ++ G S TG + LT+ E ++ + G Sbjct: 119 PAESLIWAVRAVVRDGAFLDPAVTGRVLTGYRRSTTGDIATPDELTERETDVLRLVARGR 178 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 +IA L + ++ ++ I ++ + I ++ H Sbjct: 179 TNAEIAAGLGISEVTVKSHINHIFTKLDLRDRAAAIV-YAFDH 220 >UniRef50_C9P7J6 Two component transcriptional regulator LuxR family n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P7J6_VIBME Length = 202 Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 13/153 (8%) Query: 62 ARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS-------DRNMQSLANYWRKH 114 + +D S+ + + + T +VL S MQ+ A + Sbjct: 44 EYQPHIVVIDISIPLIDGISVIERCTAMGITTKFLVLTSQPNSHFVSLCMQAGAYGYLSK 103 Query: 115 NSAISAVIYN----DDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPY 170 + + ++ G + + L + + + L+ E + Y+VSG + Sbjct: 104 ETGLEELVTAMKAIAAGYKFFPDCVTHLSTVQDQND--LSILSAREIVVFNYLVSGLSNN 161 Query: 171 QIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 +IAE + + +++ YK+RI ++ K I Sbjct: 162 EIAEKMLISNKTVSTYKKRIMDKLNAKNIVDLI 194 >UniRef50_C6Y109 Response regulator receiver n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y109_PEDHD Length = 224 Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 52/164 (31%), Gaps = 20/164 (12%) Query: 66 GYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL-------VSDRNMQSLANYWRKHNSA- 117 + D ++ + + ++L + Q+ A+ + N Sbjct: 58 DLLLTDLNMPGINGISLISEVKNFNPNVKVVILSMHDDEKYVAQAFQAGASGYLLKNVDA 117 Query: 118 ---ISAVIYNDDGLDVAN--------EKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSG 166 + A+ Y G K+ + + E I+ + G Sbjct: 118 EEMLFALKYISRGGSYICAALSMSMLSKVLKRINSTVAVAETAIDFSSREIEILELIAEG 177 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 ++A+ L + R++ ++Q + + G + IR +++ H Sbjct: 178 LTNQEMADRLFISKRTVEGHRQSLTDKTGCRNTAALIR-YAMVH 220 >UniRef50_A1ZFU2 Transcriptional regulator, LuxR family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZFU2_9SPHI Length = 219 Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 16/132 (12%), Positives = 48/132 (36%), Gaps = 15/132 (11%) Query: 77 LRLFLEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIR 136 L + + +I + + ++ +R L N A+ G + ++ + Sbjct: 88 LTMHNNESYIKEIIAAGASGYILKNRGASELVN----------AIRTIYAGEEYFSKAVT 137 Query: 137 QLFI-----GRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIE 191 I + LT+ E ++ + G +I++ L + ++ +++ + Sbjct: 138 DTLIKSIQESKKAKPNPQVKLTKREKEVLALIGKGMTTKEISKQLFIADTTVETHRRNLI 197 Query: 192 KRMGGKINELFI 203 ++ K ++ I Sbjct: 198 DKLEVKNSKELI 209 >UniRef50_B9L0H3 Transcriptional regulatory protein degU n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L0H3_THERP Length = 245 Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 54/174 (31%), Gaps = 26/174 (14%) Query: 62 ARLSGYIFVDFSVSF---------------------LRLFLEKDWIDYLASTDMGIVLVS 100 I VD S+ L + + + + Sbjct: 47 ELSPDVILVDLSLPGMNGLEVARALKRRQPQAGVIILTMHQDDEQLFNAIRAGASAYCTK 106 Query: 101 DRNMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLF--IGRYLSFTGG--NTLTQME 156 D + L + + + ++ F + R + G + LT E Sbjct: 107 DIEPEQLIDVITRVARGEYLINEMVLSRPFVASRVLDQFRELSRLDRTSSGFFSPLTPRE 166 Query: 157 FTIMGYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 I+ + GY+ +IA+ L++ +++ + I +++ + ++++H Sbjct: 167 IEILDCVARGYSNKEIAQALNISDQTVKNHITSILRKLAVNDRTQAV-IYALRH 219 >UniRef50_A1WT06 Two component transcriptional regulator, LuxR family n=1 Tax=Halorhodospira halophila SL1 RepID=A1WT06_HALHL Length = 216 Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 20/157 (12%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS----------DRNMQSLANYWRKH 114 + +D + + + I L + + +++ +++ A + Sbjct: 48 PDVVLMDLQMPGMGG---VEAIRRLYRSHPKVGVIALTVYQSGPYPAHALRAGAKGYVHK 104 Query: 115 NSA----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT---LTQMEFTIMGYMVSGY 167 + I A+ G ++ + L TG + LT EF ++ +++G Sbjct: 105 GADRDELIEAIRSVYLGRRYICHEVARHVALNSLDGTGESPFDHLTPREFEVLMRILNGQ 164 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 IA+ L + +++ Y+ RI +R+G + + R Sbjct: 165 RGTSIAKDLCLSPKTVSTYRSRIFERLGVRNDAQLTR 201 >UniRef50_A1VTE6 Two component transcriptional regulator, LuxR family n=9 Tax=Comamonadaceae RepID=A1VTE6_POLNA Length = 292 Score = 84.0 bits (206), Expect = 3e-15, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 59/170 (34%), Gaps = 23/170 (13%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRNMQS-------LANYWRKHN 115 + VD ++ F +++ + +V+ S + Q A + N Sbjct: 121 NEFDVMLVDLNLGDGSGFELIEYMKAVRPMAEAVVISSMEDAQHALHAFELGATGYLVKN 180 Query: 116 SAI----SAVIYNDDGLDVANEKIRQLFIGRYLSFT-----------GGNTLTQMEFTIM 160 S A++ +G + + + ++ N L++ E ++ Sbjct: 181 SWFGNFPQAILQVVNGGASITPNLARRLLSKFEPPQANVEPLPVNQGKDNKLSEREQQVL 240 Query: 161 GYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 + SG++ +I L + ++ + + I +++ + + S + H Sbjct: 241 KLVASGHSSTEIGARLVISWQTANTHIKNIYRKLNVRNRAQAV-SFAANH 289 >UniRef50_UPI000197BDC0 two component LuxR family transcriptional regulator n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BDC0 Length = 217 Score = 83.6 bits (205), Expect = 4e-15, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 58/164 (35%), Gaps = 20/164 (12%) Query: 66 GYIFVDFSVSFLRLFLE-KDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYN 124 I D+ + + +++I +L I ++ + + ++S +SAV+ Sbjct: 51 DVIVTDYMMPNNTQSSDGQNYIQFLRRQYPNIAVIVLTMVSNPMIVQMLYDSGVSAVVSK 110 Query: 125 DDGLDVANEKIRQLFIGRYLS------------------FTGGNTLTQMEFTIMGYMVSG 166 + L + I GR TL+ E ++ V G Sbjct: 111 EAPLGDLMKAITLAGQGRQYRVPVADMTTTLKSRNAVTLNDRVKTLSPRELEVLRLFVQG 170 Query: 167 YNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 IA+ L+ ++I K +++G N+ I S+ + H Sbjct: 171 KPIVDIAKQLNRSDKTISLQKNAAMRKLGVDNNQALI-SYCLTH 213 >UniRef50_Q0EZ33 Regulatory protein, LuxR:Response regulator receiver n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZ33_9PROT Length = 217 Score = 83.6 bits (205), Expect = 4e-15, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 14/159 (8%) Query: 59 NHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVL------VSDRNMQSLANYWR 112 ++ L + +D S+ + I ++L V++R MQ A + Sbjct: 47 DYEKWLPDIVIMDISLPDISGLEVMRRILLAHPEARILMLSMHSGMVAERAMQMGARGFV 106 Query: 113 KHNSA----ISAVIYNDDGLDVANE----KIRQLFIGRYLSFTGGNTLTQMEFTIMGYMV 164 S ISA+ G ++ ++ L ++LT+ E + + Sbjct: 107 CKRSGARLLISAIHEVMAGRRYLDDETGVQLPLLHSASETLKPLPSSLTRRELEVCLLLT 166 Query: 165 SGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFI 203 G + IA L + +++Y+++Q I +++G + Sbjct: 167 DGRSVSDIAAALHLSEKTVYSHRQHIMEKLGVATMAELV 205 >UniRef50_A0LGT7 Two component transcriptional regulator, LuxR family n=3 Tax=Bacteria RepID=A0LGT7_SYNFM Length = 214 Score = 83.6 bits (205), Expect = 4e-15, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 9/153 (5%) Query: 60 HNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLA-NYW 111 + +D + +D + + + + S R M++ A ++ Sbjct: 45 KPVDAPACLVLDIRMPAFNGLDLQDHLAKREDSFPIVFITGHGTVPMSVRAMKAGAVDFL 104 Query: 112 RKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQ 171 +K + ++ E R R L TLT E + ++V+G Q Sbjct: 105 QKPFGDTDLLSVVGQAIEKDRESRRHRKEIRDLRQ-RLATLTPREHEVFAHVVAGMLNKQ 163 Query: 172 IAEVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 IA L ++I ++ R+ +MG + +R Sbjct: 164 IAFALGTVEKTIKVHRARVMAKMGAESVADLVR 196 >UniRef50_B5JLG5 Sigma-70, region 4 family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLG5_9BACT Length = 225 Score = 83.6 bits (205), Expect = 4e-15, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 57/163 (34%), Gaps = 17/163 (10%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDRN--------MQSLANYWRKH 114 + +D + L + L + +++ S R + + A + Sbjct: 59 LKPEIVILDVGLPELSGTEVLRGLT-LHVPGVKVLVFSGRASSANIRELLSAGAQGYVDK 117 Query: 115 NSAI----SAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNT---LTQMEFTIMGYMVSGY 167 A+ G K+ + L+ ++ L+ E I+ + + Sbjct: 118 MDGFDEFKKALDIISGGGTFIGPKMASVMRSLILNPDAASSEIPLSDREKQILQLVAESF 177 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH 210 + +IA L++ +R++ ++ I +++ R ++++H Sbjct: 178 STKEIASRLNISVRTVDNHRTNIMRKLNLHDVAALTR-YAIKH 219 >UniRef50_C1SMK1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMK1_9BACT Length = 219 Score = 83.6 bits (205), Expect = 4e-15, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 66/162 (40%), Gaps = 18/162 (11%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLV-------SDRNMQSLANYWRKHNSA 117 I VD S++ I +VL ++R +++ A+ + + Sbjct: 50 PDIIIVDLSLTTSDGLEVIKAIKARYPNIFILVLSMREEMVFAERCVRAGASGYVMKSEK 109 Query: 118 ----ISAVIYNDDGLDVANEKIRQLFIGRYLS------FTGGNTLTQMEFTIMGYMVSGY 167 I A+ G +EK+ + + + ++ LT EF + + +G+ Sbjct: 110 PSVIIEALRKIIKGKIYFSEKMTEYILNKAMNVKNCEDKDVVEALTDREFQVFQMIGNGF 169 Query: 168 NPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQ 209 QIA L++ +++I A+++ ++ ++G K ++++ Sbjct: 170 TTKQIATKLNLSVKTIDAFRESMKHKLGLKSAPEL-SQYAIK 210 >UniRef50_B9XC41 Two component transcriptional regulator, LuxR family n=7 Tax=Verrucomicrobia RepID=B9XC41_9BACT Length = 267 Score = 83.6 bits (205), Expect = 4e-15, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 65/164 (39%), Gaps = 19/164 (11%) Query: 63 RLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVS-------DRNMQSLANYWRKHN 115 I +D ++ + I +A + +VL S + ++ A+ + + Sbjct: 75 LTPDVILMDIAMPLMNGLEATRKIAEVAPSAKVLVLSSYGEDDYVQKLTEAGASGYLIKH 134 Query: 116 SA----ISAVIYNDDGLDVANEKIRQLFIGR----YLSFTGGNT---LTQMEFTIMGYMV 164 +A ++AV G + I + + + + G LT+ E +G++V Sbjct: 135 AAANDLVAAVRETHKGNAFFSPGIAKRLRDQVRAGFANGNGTKASFELTERELETLGHIV 194 Query: 165 SGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSV 208 +G IA + + I+++ ++Q++ ++ R +++ Sbjct: 195 AGKPNKVIACDMGISIKTVEKHRQQVMNKLNIHEVASLTR-YAI 237 >UniRef50_Q0A525 Two component transcriptional regulator, LuxR family n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A525_ALHEH Length = 214 Score = 83.6 bits (205), Expect = 4e-15, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 51/151 (33%), Gaps = 13/151 (8%) Query: 65 SGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIV-------LVSDRNMQSLANYWRKHNSA 117 + +D S+ + + A ++ + +++ + A + +SA Sbjct: 56 FDVVVMDISLPGISGLETLARLQRRAPEIRVLIFSMHEEPVFAEQALSGGAAGYITKSSA 115 Query: 118 ----ISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIMGYMVSGYNPYQIA 173 + AV G +R G +L+ EF I + G +IA Sbjct: 116 PEVLVEAVQRIAAGGHYLGPDVRCR--HGDADTAGLQSLSAREFEIFRLLAEGCGSAEIA 173 Query: 174 EVLDMDIRSIYAYKQRIEKRMGGKINELFIR 204 +L++ +++ Y I +++ R Sbjct: 174 RLLNISYKTVANYGSGIREKLALNNVAEMTR 204 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.133 0.349 Lambda K H 0.267 0.0404 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,058,059,023 Number of Sequences: 3077464 Number of extensions: 36276234 Number of successful extensions: 183113 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 4730 Number of HSP's successfully gapped in prelim test: 420 Number of HSP's that attempted gapping in prelim test: 177888 Number of HSP's gapped (non-prelim): 5244 length of query: 210 length of database: 1,040,396,356 effective HSP length: 123 effective length of query: 87 effective length of database: 661,868,284 effective search space: 57582540708 effective search space used: 57582540708 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.0 bits) S2: 90 (39.3 bits)