BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (309 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B5XRE3 DNA replication terminus site-binding protein n=... 456 e-127 UniRef50_A7FHW9 DNA replication terminus site-binding protein n=... 346 6e-94 UniRef50_D2TZG3 DNA replication terminus site-binding protein n=... 245 2e-63 UniRef50_D1NYQ1 DNA replication site-binding protein n=4 Tax=Pro... 236 6e-61 UniRef50_UPI000190F113 DNA replication terminus site-binding pro... 197 5e-49 UniRef50_C0B3V4 Putative uncharacterized protein n=1 Tax=Proteus... 157 4e-37 UniRef50_A0KM73 DNA replication terminus site-binding protein n=... 124 4e-27 UniRef50_A0Y2M9 DNA replication terminus site-binding protein n=... 110 5e-23 UniRef50_Q8L2D8 Predicted trans-acting tus protein n=1 Tax=Prote... 99 3e-19 UniRef50_C4NV60 Ter n=11 Tax=Gammaproteobacteria RepID=C4NV60_ECOLX 94 5e-18 UniRef50_C0B3V3 Putative uncharacterized protein n=1 Tax=Proteus... 83 1e-14 UniRef50_A6FFP0 Putative DNA replication terminus site-binding p... 80 8e-14 UniRef50_A0L2U6 Site-binding protein, DNA replication region n=1... 77 6e-13 UniRef50_A3JJE4 DNA replication terminus site-binding protein n=... 74 7e-12 UniRef50_Q7A236 Ter binding protein n=2 Tax=root RepID=Q7A236_PROVU 74 1e-11 UniRef50_C1MF14 DNA replication terminus site-binding protein n=... 71 5e-11 UniRef50_A9CZ55 DNA replication terminus site-binding protein n=... 65 4e-09 >UniRef50_B5XRE3 DNA replication terminus site-binding protein n=130 Tax=Enterobacteriaceae RepID=TUS_KLEP3 Length = 310 Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/309 (71%), Positives = 250/309 (80%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 MA YDLV+RLN TFRQ+E EL L +LL ARVF LP V K+ EH+PL I V Q Sbjct: 1 MASYDLVERLNDTFRQIELELQTLQQALSSCRLLAARVFELPAVSKDAEHDPLANIPVVQ 60 Query: 61 HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKL 120 H G A +LALRH+ HLFIQQQSENRSSKAAVRLPG +C QV Q L + IQHIN L Sbjct: 61 HSGKAALALALRHYSHLFIQQQSENRSSKAAVRLPGAICLQVTAAEQQDLQARIQHINAL 120 Query: 121 KTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKN 180 K TFE IVTV+S LP ARFEWVHRHLPGLITL+AYRTLT L DP+T+RFGWANKH+IKN Sbjct: 121 KATFEKIVTVDSGLPPTARFEWVHRHLPGLITLSAYRTLTPLIDPSTIRFGWANKHVIKN 180 Query: 181 LHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIA 240 L RD+VL LEKSL+SPR+V PWTRE+WQ KLEREYQDIAALPQ A+LKIKRPVKVQPIA Sbjct: 181 LTRDQVLMMLEKSLQSPRAVPPWTREQWQSKLEREYQDIAALPQRARLKIKRPVKVQPIA 240 Query: 241 RVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLII 300 RVWY +QKQVQ+ACP+PLIALI+ G VPD+GELLNYDADNVQ+RYKP+AQ LRL+I Sbjct: 241 RVWYASEQKQVQYACPSPLIALISGSQGVSVPDIGELLNYDADNVQYRYKPEAQSLRLLI 300 Query: 301 PRLHLYVAD 309 PRLHL++A Sbjct: 301 PRLHLWLAS 309 >UniRef50_A7FHW9 DNA replication terminus site-binding protein n=32 Tax=Enterobacteriaceae RepID=TUS_YERP3 Length = 311 Score = 346 bits (887), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 165/307 (53%), Positives = 221/307 (71%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 M +YDL++R+NT F ++E L L+ L+ ARVFSLPE++K EH P+ +I V Sbjct: 1 MNKYDLIERMNTRFAELEVTLHQLHQQLDDLPLIAARVFSLPEIEKGTEHQPIEQITVNI 60 Query: 61 HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKL 120 G A+ L L+HF+ LF+ Q ++ SSKAA+RLPGVLC+ V + I+ N+L Sbjct: 61 TEGEHAKKLGLQHFQRLFLHHQGQHVSSKAALRLPGVLCFSVTDKELIECQDIIKKTNQL 120 Query: 121 KTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKN 180 K EHI+TVES LP+ RFE+VH HL GLITLN YRT+T L +P+++RFGWANKHIIKN Sbjct: 121 KAELEHIITVESGLPSEQRFEFVHTHLHGLITLNTYRTITPLINPSSVRFGWANKHIIKN 180 Query: 181 LHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIA 240 + R+++L QLEKSL + R+V P+TRE+W+ + E D+ LP+ +LKIKRPVKVQPIA Sbjct: 181 VTREDILLQLEKSLNAGRAVPPFTREQWRELISLEINDVQRLPEKTRLKIKRPVKVQPIA 240 Query: 241 RVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLII 300 RVWY+ QKQVQH CP PLIA R +GA +P +GEL +YD +++H+YKP A+PLRL++ Sbjct: 241 RVWYQEQQKQVQHPCPMPLIAFCQRQSGAELPKLGELTDYDVKHIKHKYKPDAKPLRLLV 300 Query: 301 PRLHLYV 307 PRLHLYV Sbjct: 301 PRLHLYV 307 >UniRef50_D2TZG3 DNA replication terminus site-binding protein n=1 Tax=Arsenophonus nasoniae RepID=D2TZG3_9ENTR Length = 309 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 125/304 (41%), Positives = 196/304 (64%), Gaps = 2/304 (0%) Query: 3 RYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHL 62 +YD +L+ F ++ LA F L L A VF LPE KK DE+N +N+I + Sbjct: 5 KYDARYKLSKCFDLLKVRLADFLTELNSLSLTSAIVFKLPETKKGDENNDINQITITTLT 64 Query: 63 GNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKT 122 G+ A LAL ++ LFI + S+K A+RLPG LC+ + + + ++ INKLKT Sbjct: 65 GDTALDLALANYNRLFIHDNPYHISNKTAIRLPGALCFHLSAQRYSVIKRQLETINKLKT 124 Query: 123 TFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLH 182 + IVT ES + RFE++H+ L GLITLNAYR + + P ++ FGWANK I+ + Sbjct: 125 KLKDIVTCESGIKKEQRFEFIHQQLHGLITLNAYRKINYVDSPDSINFGWANKKIVNKVT 184 Query: 183 RDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARV 242 + ++L +L K+ +S ++++ +T+++W+ +E+E QDI ++P +A LKI+RPVKVQPIARV Sbjct: 185 KAQILERLHKNYRSEKAMSAYTKQQWRYLVEKEIQDINSIPNDAILKIQRPVKVQPIARV 244 Query: 243 WYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPR 302 WY +++QVQ+ACP PL++ + + +G L +YD +N++ ++KP+ + L+LII R Sbjct: 245 WYANEKRQVQYACPLPLLSF--SCDTKHLTKLGTLSDYDINNIKIKHKPKNKKLKLIIAR 302 Query: 303 LHLY 306 LHLY Sbjct: 303 LHLY 306 >UniRef50_D1NYQ1 DNA replication site-binding protein n=4 Tax=Providencia RepID=D1NYQ1_9ENTR Length = 302 Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 130/298 (43%), Positives = 191/298 (64%), Gaps = 4/298 (1%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSL 69 L T F Q+E + F HL + + A VFSLPEV K DEHN ++ I V +H+G DA + Sbjct: 7 LITHFNQLEFNINQFCHHLTKQDRIQACVFSLPEVLKGDEHNEVSSIFVDKHVGIDAINH 66 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVT 129 + F+ LFI +SE+ S+KAA+RLPG + + S I IN+LK + ++IVT Sbjct: 67 TIELFKLLFIHNKSESVSNKAAIRLPGAIVIEASLPDYHLFQSLITDINQLKLSIKNIVT 126 Query: 130 VESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLHRDEVLAQ 189 ++ + RFE++ L GL+TLN YRT+T + D T+RFGWANK +I + ++++L++ Sbjct: 127 ---QVDESHRFEFIRESLHGLLTLNTYRTITSIVDVDTVRFGWANKKVINKVTQEQMLSR 183 Query: 190 LEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQK 249 L+ SL+S R+ + RE WQ +LE E I +LP +A LK +RPVKVQPIARVW K QK Sbjct: 184 LQASLESGRTPSHMQREHWQLQLENEIALIRSLPHDAILKTQRPVKVQPIARVWDKESQK 243 Query: 250 QVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHLYV 307 QVQ+ C TPL+ + + VGEL +Y D + R++P+++P+ L+IPRL+LY+ Sbjct: 244 QVQYPCATPLLIFAVEKSLEDIT-VGELSDYHVDQIALRHRPRSKPVELLIPRLNLYI 300 >UniRef50_UPI000190F113 DNA replication terminus site-binding protein n=4 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190F113 Length = 134 Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 95/134 (70%), Positives = 113/134 (84%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 M+RYDLV+RLN TFRQ+EQ LA + +L+QH LL+A VFSLP+V KE EH PL+ IEV Q Sbjct: 1 MSRYDLVERLNGTFRQIEQHLAALSDNLQQHSLLIASVFSLPQVTKEAEHAPLDTIEVTQ 60 Query: 61 HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKL 120 HLG +A++LALRH+RHLFIQQQSENRSSKAAVRLPGVLCYQVDN +Q L + +Q IN+L Sbjct: 61 HLGKEAEALALRHYRHLFIQQQSENRSSKAAVRLPGVLCYQVDNATQLDLENQVQRINQL 120 Query: 121 KTTFEHIVTVESEL 134 KTTFE +VTVES L Sbjct: 121 KTTFEQMVTVESGL 134 >UniRef50_C0B3V4 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B3V4_9ENTR Length = 156 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 78/132 (59%), Positives = 107/132 (81%), Gaps = 2/132 (1%) Query: 177 IIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKV 236 ++KNL R+EVLAQLEKS ++ R+V P+T E+W +L++E ++ LP+NAKLKIKRPVKV Sbjct: 24 LLKNLTRNEVLAQLEKSREANRAVPPYTSEQWAERLDKEIITLSQLPENAKLKIKRPVKV 83 Query: 237 QPIARVWYKGDQKQVQHACPTPLIAL-INRDNGAGVPDVGELLNYDADNVQHRYKPQAQP 295 QPIARVWY QKQVQ+ACP PL+A I+++N P +GEL +YDADN+Q R++P+A+ Sbjct: 84 QPIARVWYSELQKQVQYACPLPLLAFYIDKENDFK-PIIGELPDYDADNIQIRHRPKAKK 142 Query: 296 LRLIIPRLHLYV 307 L+LIIPR+HLY+ Sbjct: 143 LQLIIPRMHLYL 154 >UniRef50_A0KM73 DNA replication terminus site-binding protein n=1 Tax=Aeromonas hydrophila subsp. hydrophila ATCC 7966 RepID=A0KM73_AERHH Length = 297 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 109/312 (34%), Positives = 153/312 (49%), Gaps = 23/312 (7%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 M + L ++EQ L AA LEQ +LL A V+ LP V + EH P+ +IEV Sbjct: 1 METFTPTAALRQQMERLEQALDSLAAQLEQLELLEAHVYPLPAVPQGQEHEPIEQIEVG- 59 Query: 61 HLGNDAQSLA-LRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINK 119 +LG +A A L +R S+KA RLPG L + L I +N Sbjct: 60 YLGEEAALTATLSAYRD---HSARAGCSTKATHRLPGWLRFPAA--CAPLLRPLIDEVNG 114 Query: 120 LKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPA-TLRFGWANKHII 178 K F+ +V +FE VHR LPG+ITL YR LT L +L F WA+K I Sbjct: 115 YKLAFKALVQQAGG--RDEKFELVHRALPGVITLQVYRKLTWLQGELHSLGFTWADKQSI 172 Query: 179 KNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQP 238 L R++VL LE+S + +++ EEW + +++E DI LP +A+L+I+RPVK P Sbjct: 173 SRLSREQVLEMLERSRRYIPALS--NNEEWSKMVDQEVYDIRRLPADAELRIRRPVKTHP 230 Query: 239 -IARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHR--YKPQAQP 295 I +W + ++ Q PL L+ D V +G +Y Q R K +P Sbjct: 231 MINLLWQDREPRKQQLKASLPL--LLCSDTQPAVTHLG---HYPPKLRQARRDRKIGGEP 285 Query: 296 LRLIIPRLHLYV 307 II RLHLY+ Sbjct: 286 ---IIERLHLYL 294 >UniRef50_A0Y2M9 DNA replication terminus site-binding protein n=3 Tax=Alteromonadales RepID=A0Y2M9_9GAMM Length = 291 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 93/307 (30%), Positives = 151/307 (49%), Gaps = 36/307 (11%) Query: 9 RLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQS 68 ++ + F M + ++ L+Q + A + LPEV +E+N I V + G++A Sbjct: 6 KIRSQFDLMSELTSLLIDELKQCEYSKAEYYKLPEVLTSEENNVPQSIPVSKLTGDNALR 65 Query: 69 LALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTF-EHI 127 L F ++ + SS+ R PG+L + N ++ AL I +NK K F E I Sbjct: 66 AILNSFNDMYTKS---GLSSRVLKRHPGLLV--IKNANKQALNDRINQVNKAKAAFKECI 120 Query: 128 VTVESELPTAARFEWVHRHLPGLITLNAYRTL-TVLHDPATLRFGWANKHIIKNLHRDEV 186 +++++ ARFE VH +P LITL AYR + + P ++RF W +KH K L + Sbjct: 121 LSIDN---NDARFEAVHNAVPNLITLAAYRKIHSESESPFSVRFTWMHKHATKTLTKKMA 177 Query: 187 LAQLEKS--LKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWY 244 L L KS +PR + +++WQ + +E IA+L + KL+I+RP +V P + Y Sbjct: 178 LEMLSKSAGYTNPRMI---DQQKWQSLVAQEQMRIASLGEKEKLRIRRPTRVSPQVNIRY 234 Query: 245 KGDQKQVQHACPTPLIALINRDNGAGVPDV--GELLNYDADNVQHRYKPQAQPLR----L 298 Q + + P I LIN + PDV G L +Y+ KP + P + Sbjct: 235 TA-QNRYHVSAALPFI-LINPE-----PDVKIGTLPDYE--------KPDSHPRKRDYDF 279 Query: 299 IIPRLHL 305 ++ RL+L Sbjct: 280 LVDRLYL 286 >UniRef50_Q8L2D8 Predicted trans-acting tus protein n=1 Tax=Proteus vulgaris RepID=Q8L2D8_PROVU Length = 294 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 77/239 (32%), Positives = 119/239 (49%), Gaps = 18/239 (7%) Query: 13 TFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALR 72 TF ++E LA+ L Q L ARV +P V DE P+NRIE + G A + Sbjct: 6 TFHRLEDSLALLKRVLAQKSPLYARVCVIPPVADGDETLPVNRIEPELLYGAQAIEQTQK 65 Query: 73 HFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAA-LVSHIQHINKLKTTF-EHIVTV 130 F L I+ + S K+ R GVL Y + AA +++ I IN +K + EHI+T Sbjct: 66 AFTDLHIK---DGLSQKSTRRTAGVLWYDDETPEFAAEVMALITSINAIKLSIQEHIITG 122 Query: 131 ESELPTAARFEWVHRHLPGLITLNAYRTLTVLH--DPATLRFGWANKHIIKNLHRDEVLA 188 S ARF +H PG++TL+ YR + H D ++RF W K +++ + ++LA Sbjct: 123 FSS--QNARFSALHNACPGVMTLHLYRQIRAWHKADIQSIRFSWQKKSLLRIPDKAKLLA 180 Query: 189 QLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGD 247 ++ + V QR IA PQ+ KL+++RP K+QP+A + ++ D Sbjct: 181 SMQADVIDNSEVTVPVGNLAQR--------IANTPQD-KLRLRRPAKIQPVANIQFRAD 230 >UniRef50_C4NV60 Ter n=11 Tax=Gammaproteobacteria RepID=C4NV60_ECOLX Length = 291 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 77/261 (29%), Positives = 131/261 (50%), Gaps = 19/261 (7%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSL 69 ++ F M ++L ++ +++ A+V ++P K E+ P+N+I V + G +A L Sbjct: 6 ISEQFSAMCRDLTNLSSLIKRLPPRYAKVAAIPPTGKGMENEPVNKIVVTEQTGREALEL 65 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQA-ALVSHIQHINKLKTTFEHIV 128 A +R L I + + S K+A R GVL + + A + + ++ IN K E + Sbjct: 66 AAHSYRDLHI---NPDYSQKSARRTVGVLWFSPSRIGVADEIAATVERINAAKAGIEEFI 122 Query: 129 TVESELPT-AARFEWVHRHLPGLITLNAYRTLTVL--HDPATLRFGWANKHIIKNLHRDE 185 S PT RFE + PG++TL+ YR + D ++RF W K +K ++E Sbjct: 123 I--STYPTRQERFEALRADCPGVMTLHLYRQIRCYTNGDIDSIRFTWQRKDSLKKPVKEE 180 Query: 186 VLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYK 245 +L ++ + L+ + ++Q LE+ Q IA+ P+ L+ +R VKVQP+A V Sbjct: 181 LLQRIREELER-------SGPDYQLPLEQLIQKIASTPE-PYLRERREVKVQPVANVMAA 232 Query: 246 GDQKQVQHACPTPLIALINRD 266 G K V P PLI L ++D Sbjct: 233 GVLKTV--TAPMPLIVLQDKD 251 >UniRef50_C0B3V3 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B3V3_9ENTR Length = 116 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 62/102 (60%) Query: 3 RYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHL 62 +YDL+++ N F+ +E E+ + L + LL + VF LP+V KE+EH+ + + V Sbjct: 5 KYDLIEQFNRCFKLLETEIEALSTSLRKLTLLPSAVFELPDVSKEEEHDEVAYVTVSPSY 64 Query: 63 GNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDN 104 DA +L L+ +LFI + + SSK A+RLPGVLC+ +N Sbjct: 65 NEDALNLTLKLIANLFIYDNAPHISSKRAIRLPGVLCFSTNN 106 >UniRef50_A6FFP0 Putative DNA replication terminus site-binding protein (Ter bindingprotein) n=1 Tax=Moritella sp. PE36 RepID=A6FFP0_9GAMM Length = 326 Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 75/262 (28%), Positives = 130/262 (49%), Gaps = 27/262 (10%) Query: 5 DLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGN 64 +L ++L T +Q+E+ LA + + LV+R+ P V K E +N+I + Sbjct: 44 NLFEQLTTKLQQLEKLLAT----TQPVQALVSRI---PAVLKGQEQAVINQIMPELVTDM 96 Query: 65 DAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTF 124 A LA F+ + I+ S K+A R G++ +N + A +V+ I+ IN +K Sbjct: 97 LAMKLAAEAFKDIHIKHPF---SQKSARRYVGIIHLHPENQNSAKIVTSIEDINTIKGAI 153 Query: 125 EHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDP--ATLRFGWANKHIIKNLH 182 EH V E+E ARF +H + PG++T++ YR + L + ++RF W K + Sbjct: 154 EHAVVSENE-SRQARFSAIHDNCPGVMTVHLYRKIHCLENEYVKSVRFSWQRKDSLHQPD 212 Query: 183 RDEVLAQL--EKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIA 240 + ++L ++ EK +P + Q L + +Q IA ++ +L+++RPVKVQP A Sbjct: 213 KIKLLGEITAEKERATP---------DNQLALTQLHQQIATTAEH-QLRVRRPVKVQPAA 262 Query: 241 RVWYKGDQKQVQHACPTPLIAL 262 + K V P P+I + Sbjct: 263 NIVKVTGLKTV--TAPLPIIVV 282 >UniRef50_A0L2U6 Site-binding protein, DNA replication region n=1 Tax=Shewanella sp. ANA-3 RepID=A0L2U6_SHESA Length = 290 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 17/238 (7%) Query: 28 LEQHKLLVARVFSLPEVKKEDE--HNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSEN 85 L+ + + A V +P V K E P I V++ LG A + A + L I Sbjct: 24 LDSNTPVRASVTPVPPVMKSAEKVREPETVISVRETLGLAAVTKAKLAYGDLHIHPDYSQ 83 Query: 86 RSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHR 145 RS++ R PGVL Y L ++ I IN KT E +T + A RFE + Sbjct: 84 RSAR---RTPGVLWYSTSPLVTNKVMDVIARINLAKTAIEKEITTKYST-RADRFEKLRE 139 Query: 146 HLPGLITLNAYRTLTVLHDPAT-LRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWT 204 PG++ L+ YR + ++P T RF W K ++ + +D++L +L +K Sbjct: 140 VCPGVMALHLYRQIRCFNEPMTSARFSWLCKDVVSKVDKDKLLERLNADIKR-------L 192 Query: 205 REEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIAL 262 +E +L Q+I + P+ A ++ +R ++ QP+A + G K V PLI L Sbjct: 193 GDECPSQLLLLKQNILSTPE-AMIRARRDIQPQPVANLMINGKVKTVTAT--MPLIVL 247 >UniRef50_A3JJE4 DNA replication terminus site-binding protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3JJE4_9ALTE Length = 308 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 74/266 (27%), Positives = 120/266 (45%), Gaps = 28/266 (10%) Query: 36 ARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLP 95 R++ +P +E+E P+ I G +A + AL + Q S+K R+P Sbjct: 40 CRIYQIPRTVRENESQPVTDIHPTDLSGTEAFNAALHALTDWYGHPQY---STKVVNRVP 96 Query: 96 GVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAA----RFEWVHRHLPGLI 151 G L + N+ ++ ++ + IN+ KT +ES +P+ RFE +H H P LI Sbjct: 97 GALV--LANVDESQVLDRMAEINRSKTA------IESLIPSLGNRDDRFELLHGHFPWLI 148 Query: 152 TLNAYRTLTVLHDPATLR---FGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEW 208 R L VL L+ F W K IK + D+V +LE + PRS W Sbjct: 149 LAQLTRRLQVLPCSPPLQSCTFTWGIKTEIKKMTADQVCERLELFRQRPRSTI--DDVPW 206 Query: 209 QRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQ----VQHACPTPLIALIN 264 K++RE I +LP +A+L+ +R ++V+P+A + Y + + TP++ L Sbjct: 207 DIKIDREIMSIRSLPASAQLRSRRVLRVRPLANLRYHANDGEPAETYMREAHTPILIL-- 264 Query: 265 RDNGAGVPDVGELLNYDADNVQHRYK 290 N +G L NYD R + Sbjct: 265 --NPIRPIKLGVLKNYDVQTRSGRQR 288 >UniRef50_Q7A236 Ter binding protein n=2 Tax=root RepID=Q7A236_PROVU Length = 294 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 78/284 (27%), Positives = 129/284 (45%), Gaps = 31/284 (10%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSL 69 L TF Q+ +L + L ++V +P V + DEH P++ + G++A Sbjct: 3 LKKTFEQLTDDLLALKMLISGSSPLFSQVSDIPPVLRGDEHLPISYVAPDHLYGHEAIQK 62 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCY-QVDNLSQAALVSHIQHINKLKTTFE-HI 127 A+ + L I+ + S K+A R GVL + DN LV + IN LK + E HI Sbjct: 63 AVDIWSDLHIKH---DFSQKSARRASGVLWFPSEDNAFTVELVRLLSQINALKKSIETHI 119 Query: 128 VTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDP--ATLRFGWANKHIIKNLHRDE 185 +T +ARFE +H G++TL+ YR + D + +RF W K + + E Sbjct: 120 ITTYQT--RSARFEALHNQCAGVLTLHLYRQIRWWKDEHISAVRFSWQEKESLLIPDKAE 177 Query: 186 VLAQLEKSLKSPRSVAPWTREEWQRK--LEREYQDIAALPQNAKLKIKRPVKVQPIARVW 243 +L ++ K RE+ +++ L + I ++P+ +R +KVQP A + Sbjct: 178 LLVRMSKE----------GREDGKKEVPLALLMKQIVSVPEERLRIRRR-LKVQPSANIS 226 Query: 244 YKGDQ----KQVQHACPTPLIALINRDNGAGVPDVGELLNYDAD 283 ++ +Q K P P I + N P+V L YDA+ Sbjct: 227 FRSEQHPTGKLTMVTAPMPFIIIQNER-----PEVKMLKIYDAN 265 >UniRef50_C1MF14 DNA replication terminus site-binding protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MF14_9ENTR Length = 296 Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 116/241 (48%), Gaps = 22/241 (9%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRI--EVKQHLGNDAQ 67 ++TTF+ +E E+ L L A V LP V +E + I E+KQ G+DA Sbjct: 3 ISTTFQTLESEITQLRGVLGSRLPLKASVCVLPAVADGEEDMAIEHIMPELKQ--GHDAV 60 Query: 68 SLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSH-IQHINKLKTTFE- 125 A + L I+ + S K+A R GVL Y + + LV+ + IN+ K + + Sbjct: 61 HAACAAYADLHIR---DGYSQKSARRTTGVLWYDNTDAEFSQLVTRLVTSINQHKESIQR 117 Query: 126 HIVT--VESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPAT--LRFGWANKHIIKNL 181 HI+ P RF +H PG++TL+ YR L + + + FGW K + + Sbjct: 118 HIIENYGGDRRPEYMRFNALHSACPGVMTLHLYRQLRMFDNANVNLVSFGWRQKTLFSRV 177 Query: 182 HRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIAR 241 ++ E+L ++ K ++ E+ +L + IA +P+ KL+++RPVKV P A Sbjct: 178 NKIELLQKMGKDIEED--------EDKSVRLNSLIKAIARVPEE-KLRLRRPVKVHPAAN 228 Query: 242 V 242 + Sbjct: 229 I 229 >UniRef50_A9CZ55 DNA replication terminus site-binding protein n=1 Tax=Shewanella benthica KT99 RepID=A9CZ55_9GAMM Length = 314 Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/265 (23%), Positives = 125/265 (47%), Gaps = 24/265 (9%) Query: 15 RQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHF 74 RQ+EQ + L +H V FS+P +K +E +I+V Q +A F Sbjct: 17 RQLEQAVTKMLIVLGKHSPEVIG-FSIPSFEKREEDEQPEQIQV--------QPVADFSF 67 Query: 75 RHLFIQQ--QSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVES 132 H Q +++ R PGV+ + + + ++ I IN+LK F V + Sbjct: 68 THTAFSQWLAPVGANTRLVKRYPGVV---ILSSGEQQIIPLISEINRLKDEFAKAVRLGF 124 Query: 133 ELPTAARFEWVHRHLPGLITLNAYRTLT-VLHDPATLRFGWANKHIIKNLHRDEVLAQLE 191 + +A E +H+ +PG++ A R + ++ +++ F WA++ ++K + +++ LA ++ Sbjct: 125 KNRQSAH-ENLHKIIPGILLQQATRKIHHLVQTVSSVNFYWAHRPMVKEITKEQALADID 183 Query: 192 KSLKSPR-SVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQ 250 ++L+S R + + E +++ + E I+ +P +A++ +R +VQP +W K + Sbjct: 184 RALESKRYDLTMLNKTEIEQRTQHEKSLISRIPADARIIERRIARVQPCYDIWIKASGSK 243 Query: 251 V-------QHACPTPLIALINRDNG 268 + P + + R NG Sbjct: 244 TATKLGSKNASLPVIIFGKVGRYNG 268 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B5XRE3 DNA replication terminus site-binding protein n=... 392 e-108 UniRef50_A7FHW9 DNA replication terminus site-binding protein n=... 381 e-104 UniRef50_D2TZG3 DNA replication terminus site-binding protein n=... 349 7e-95 UniRef50_D1NYQ1 DNA replication site-binding protein n=4 Tax=Pro... 329 6e-89 UniRef50_A0KM73 DNA replication terminus site-binding protein n=... 270 6e-71 UniRef50_C4NV60 Ter n=11 Tax=Gammaproteobacteria RepID=C4NV60_ECOLX 253 7e-66 UniRef50_A0Y2M9 DNA replication terminus site-binding protein n=... 247 4e-64 UniRef50_Q8L2D8 Predicted trans-acting tus protein n=1 Tax=Prote... 241 2e-62 UniRef50_Q7A236 Ter binding protein n=2 Tax=root RepID=Q7A236_PROVU 239 1e-61 UniRef50_A0L2U6 Site-binding protein, DNA replication region n=1... 233 5e-60 UniRef50_A6FFP0 Putative DNA replication terminus site-binding p... 225 1e-57 UniRef50_A3JJE4 DNA replication terminus site-binding protein n=... 219 1e-55 UniRef50_C1MF14 DNA replication terminus site-binding protein n=... 218 2e-55 UniRef50_A9CZ55 DNA replication terminus site-binding protein n=... 206 8e-52 UniRef50_UPI000190F113 DNA replication terminus site-binding pro... 159 1e-37 UniRef50_C0B3V4 Putative uncharacterized protein n=1 Tax=Proteus... 157 6e-37 UniRef50_C0B3V3 Putative uncharacterized protein n=1 Tax=Proteus... 122 2e-26 Sequences not found previously or not previously below threshold: UniRef50_C4XDE4 Putative uncharacterized protein n=3 Tax=Klebsie... 84 5e-15 UniRef50_B5EVU5 DNA replication terminus site-binding protein (T... 84 7e-15 UniRef50_Q19NN4 Putative DNA replication termination protein n=8... 74 7e-12 UniRef50_A0L360 Site-binding protein, DNA replication region n=1... 73 1e-11 UniRef50_B7XGI4 Replication terminus site binding protein n=2 Ta... 69 3e-10 UniRef50_C9P141 Putative uncharacterized protein n=1 Tax=Vibrio ... 61 5e-08 UniRef50_Q1N4Y0 Putative uncharacterized protein n=1 Tax=Bermane... 48 5e-04 UniRef50_Q3JAL9 Putative uncharacterized protein n=2 Tax=Nitroso... 47 7e-04 UniRef50_Q2BNN0 Putative uncharacterized protein n=1 Tax=Neptuni... 42 0.019 UniRef50_A1SVY6 Predicted primosomal replication protein N'' n=1... 41 0.040 >UniRef50_B5XRE3 DNA replication terminus site-binding protein n=130 Tax=Enterobacteriaceae RepID=TUS_KLEP3 Length = 310 Score = 392 bits (1007), Expect = e-108, Method: Composition-based stats. Identities = 221/309 (71%), Positives = 250/309 (80%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 MA YDLV+RLN TFRQ+E EL L +LL ARVF LP V K+ EH+PL I V Q Sbjct: 1 MASYDLVERLNDTFRQIELELQTLQQALSSCRLLAARVFELPAVSKDAEHDPLANIPVVQ 60 Query: 61 HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKL 120 H G A +LALRH+ HLFIQQQSENRSSKAAVRLPG +C QV Q L + IQHIN L Sbjct: 61 HSGKAALALALRHYSHLFIQQQSENRSSKAAVRLPGAICLQVTAAEQQDLQARIQHINAL 120 Query: 121 KTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKN 180 K TFE IVTV+S LP ARFEWVHRHLPGLITL+AYRTLT L DP+T+RFGWANKH+IKN Sbjct: 121 KATFEKIVTVDSGLPPTARFEWVHRHLPGLITLSAYRTLTPLIDPSTIRFGWANKHVIKN 180 Query: 181 LHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIA 240 L RD+VL LEKSL+SPR+V PWTRE+WQ KLEREYQDIAALPQ A+LKIKRPVKVQPIA Sbjct: 181 LTRDQVLMMLEKSLQSPRAVPPWTREQWQSKLEREYQDIAALPQRARLKIKRPVKVQPIA 240 Query: 241 RVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLII 300 RVWY +QKQVQ+ACP+PLIALI+ G VPD+GELLNYDADNVQ+RYKP+AQ LRL+I Sbjct: 241 RVWYASEQKQVQYACPSPLIALISGSQGVSVPDIGELLNYDADNVQYRYKPEAQSLRLLI 300 Query: 301 PRLHLYVAD 309 PRLHL++A Sbjct: 301 PRLHLWLAS 309 >UniRef50_A7FHW9 DNA replication terminus site-binding protein n=32 Tax=Enterobacteriaceae RepID=TUS_YERP3 Length = 311 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 165/307 (53%), Positives = 221/307 (71%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 M +YDL++R+NT F ++E L L+ L+ ARVFSLPE++K EH P+ +I V Sbjct: 1 MNKYDLIERMNTRFAELEVTLHQLHQQLDDLPLIAARVFSLPEIEKGTEHQPIEQITVNI 60 Query: 61 HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKL 120 G A+ L L+HF+ LF+ Q ++ SSKAA+RLPGVLC+ V + I+ N+L Sbjct: 61 TEGEHAKKLGLQHFQRLFLHHQGQHVSSKAALRLPGVLCFSVTDKELIECQDIIKKTNQL 120 Query: 121 KTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKN 180 K EHI+TVES LP+ RFE+VH HL GLITLN YRT+T L +P+++RFGWANKHIIKN Sbjct: 121 KAELEHIITVESGLPSEQRFEFVHTHLHGLITLNTYRTITPLINPSSVRFGWANKHIIKN 180 Query: 181 LHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIA 240 + R+++L QLEKSL + R+V P+TRE+W+ + E D+ LP+ +LKIKRPVKVQPIA Sbjct: 181 VTREDILLQLEKSLNAGRAVPPFTREQWRELISLEINDVQRLPEKTRLKIKRPVKVQPIA 240 Query: 241 RVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLII 300 RVWY+ QKQVQH CP PLIA R +GA +P +GEL +YD +++H+YKP A+PLRL++ Sbjct: 241 RVWYQEQQKQVQHPCPMPLIAFCQRQSGAELPKLGELTDYDVKHIKHKYKPDAKPLRLLV 300 Query: 301 PRLHLYV 307 PRLHLYV Sbjct: 301 PRLHLYV 307 >UniRef50_D2TZG3 DNA replication terminus site-binding protein n=1 Tax=Arsenophonus nasoniae RepID=D2TZG3_9ENTR Length = 309 Score = 349 bits (895), Expect = 7e-95, Method: Composition-based stats. Identities = 125/304 (41%), Positives = 196/304 (64%), Gaps = 2/304 (0%) Query: 3 RYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHL 62 +YD +L+ F ++ LA F L L A VF LPE KK DE+N +N+I + Sbjct: 5 KYDARYKLSKCFDLLKVRLADFLTELNSLSLTSAIVFKLPETKKGDENNDINQITITTLT 64 Query: 63 GNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKT 122 G+ A LAL ++ LFI + S+K A+RLPG LC+ + + + ++ INKLKT Sbjct: 65 GDTALDLALANYNRLFIHDNPYHISNKTAIRLPGALCFHLSAQRYSVIKRQLETINKLKT 124 Query: 123 TFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLH 182 + IVT ES + RFE++H+ L GLITLNAYR + + P ++ FGWANK I+ + Sbjct: 125 KLKDIVTCESGIKKEQRFEFIHQQLHGLITLNAYRKINYVDSPDSINFGWANKKIVNKVT 184 Query: 183 RDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARV 242 + ++L +L K+ +S ++++ +T+++W+ +E+E QDI ++P +A LKI+RPVKVQPIARV Sbjct: 185 KAQILERLHKNYRSEKAMSAYTKQQWRYLVEKEIQDINSIPNDAILKIQRPVKVQPIARV 244 Query: 243 WYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPR 302 WY +++QVQ+ACP PL++ + + +G L +YD +N++ ++KP+ + L+LII R Sbjct: 245 WYANEKRQVQYACPLPLLSF--SCDTKHLTKLGTLSDYDINNIKIKHKPKNKKLKLIIAR 302 Query: 303 LHLY 306 LHLY Sbjct: 303 LHLY 306 >UniRef50_D1NYQ1 DNA replication site-binding protein n=4 Tax=Providencia RepID=D1NYQ1_9ENTR Length = 302 Score = 329 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 130/300 (43%), Positives = 191/300 (63%), Gaps = 4/300 (1%) Query: 8 DRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQ 67 L T F Q+E + F HL + + A VFSLPEV K DEHN ++ I V +H+G DA Sbjct: 5 QELITHFNQLEFNINQFCHHLTKQDRIQACVFSLPEVLKGDEHNEVSSIFVDKHVGIDAI 64 Query: 68 SLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHI 127 + + F+ LFI +SE+ S+KAA+RLPG + + S I IN+LK + ++I Sbjct: 65 NHTIELFKLLFIHNKSESVSNKAAIRLPGAIVIEASLPDYHLFQSLITDINQLKLSIKNI 124 Query: 128 VTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLHRDEVL 187 VT ++ + RFE++ L GL+TLN YRT+T + D T+RFGWANK +I + ++++L Sbjct: 125 VT---QVDESHRFEFIRESLHGLLTLNTYRTITSIVDVDTVRFGWANKKVINKVTQEQML 181 Query: 188 AQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGD 247 ++L+ SL+S R+ + RE WQ +LE E I +LP +A LK +RPVKVQPIARVW K Sbjct: 182 SRLQASLESGRTPSHMQREHWQLQLENEIALIRSLPHDAILKTQRPVKVQPIARVWDKES 241 Query: 248 QKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHLYV 307 QKQVQ+ C TPL+ + + VGEL +Y D + R++P+++P+ L+IPRL+LY+ Sbjct: 242 QKQVQYPCATPLLIFAVEKSLEDIT-VGELSDYHVDQIALRHRPRSKPVELLIPRLNLYI 300 >UniRef50_A0KM73 DNA replication terminus site-binding protein n=1 Tax=Aeromonas hydrophila subsp. hydrophila ATCC 7966 RepID=A0KM73_AERHH Length = 297 Score = 270 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 149/311 (47%), Gaps = 21/311 (6%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 M + L ++EQ L AA LEQ +LL A V+ LP V + EH P+ +IEV Sbjct: 1 METFTPTAALRQQMERLEQALDSLAAQLEQLELLEAHVYPLPAVPQGQEHEPIEQIEVGY 60 Query: 61 HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKL 120 A + L +R S+KA RLPG L + L I +N Sbjct: 61 LGEEAALTATLSAYRD---HSARAGCSTKATHRLPGWLRFPA--ACAPLLRPLIDEVNGY 115 Query: 121 KTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPA-TLRFGWANKHIIK 179 K F+ +V +FE VHR LPG+ITL YR LT L +L F WA+K I Sbjct: 116 KLAFKALVQQAGG--RDEKFELVHRALPGVITLQVYRKLTWLQGELHSLGFTWADKQSIS 173 Query: 180 NLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPI 239 L R++VL LE+S + +++ EEW + +++E DI LP +A+L+I+RPVK P+ Sbjct: 174 RLSREQVLEMLERSRRYIPALS--NNEEWSKMVDQEVYDIRRLPADAELRIRRPVKTHPM 231 Query: 240 AR-VWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHR--YKPQAQPL 296 +W + ++ Q PL L+ D V +G +Y Q R K +P Sbjct: 232 INLLWQDREPRKQQLKASLPL--LLCSDTQPAVTHLG---HYPPKLRQARRDRKIGGEP- 285 Query: 297 RLIIPRLHLYV 307 II RLHLY+ Sbjct: 286 --IIERLHLYL 294 >UniRef50_C4NV60 Ter n=11 Tax=Gammaproteobacteria RepID=C4NV60_ECOLX Length = 291 Score = 253 bits (645), Expect = 7e-66, Method: Composition-based stats. Identities = 79/287 (27%), Positives = 137/287 (47%), Gaps = 22/287 (7%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSL 69 ++ F M ++L ++ +++ A+V ++P K E+ P+N+I V + G +A L Sbjct: 6 ISEQFSAMCRDLTNLSSLIKRLPPRYAKVAAIPPTGKGMENEPVNKIVVTEQTGREALEL 65 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQA-ALVSHIQHINKLKTTFEHIV 128 A +R L I + + S K+A R GVL + + A + + ++ IN K E + Sbjct: 66 AAHSYRDLHI---NPDYSQKSARRTVGVLWFSPSRIGVADEIAATVERINAAKAGIEEFI 122 Query: 129 TVESELPTAARFEWVHRHLPGLITLNAYRTLTVL--HDPATLRFGWANKHIIKNLHRDEV 186 RFE + PG++TL+ YR + D ++RF W K +K ++E+ Sbjct: 123 ISTYPT-RQERFEALRADCPGVMTLHLYRQIRCYTNGDIDSIRFTWQRKDSLKKPVKEEL 181 Query: 187 LAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKG 246 L ++ + L+ + ++Q LE+ Q IA+ P+ L+ +R VKVQP+A V G Sbjct: 182 LQRIREELER-------SGPDYQLPLEQLIQKIASTPE-PYLRERREVKVQPVANVMAAG 233 Query: 247 DQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQA 293 K V P PLI L ++D + L N+DA + +A Sbjct: 234 VLKTV--TAPMPLIVLQDKD-----VQLKLLRNFDASEQRKTRSDKA 273 >UniRef50_A0Y2M9 DNA replication terminus site-binding protein n=3 Tax=Alteromonadales RepID=A0Y2M9_9GAMM Length = 291 Score = 247 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 88/305 (28%), Positives = 146/305 (47%), Gaps = 32/305 (10%) Query: 9 RLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQS 68 ++ + F M + ++ L+Q + A + LPEV +E+N I V + G++A Sbjct: 6 KIRSQFDLMSELTSLLIDELKQCEYSKAEYYKLPEVLTSEENNVPQSIPVSKLTGDNALR 65 Query: 69 LALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTF-EHI 127 L F ++ + SS+ R PG+L + N ++ AL I +NK K F E I Sbjct: 66 AILNSFNDMYTKS---GLSSRVLKRHPGLLV--IKNANKQALNDRINQVNKAKAAFKECI 120 Query: 128 VTVESELPTAARFEWVHRHLPGLITLNAYRTLT-VLHDPATLRFGWANKHIIKNLHRDEV 186 +++++ ARFE VH +P LITL AYR + P ++RF W +KH K L + Sbjct: 121 LSIDN---NDARFEAVHNAVPNLITLAAYRKIHSESESPFSVRFTWMHKHATKTLTKKMA 177 Query: 187 LAQLEKS--LKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWY 244 L L KS +PR + +++WQ + +E IA+L + KL+I+RP +V P + Y Sbjct: 178 LEMLSKSAGYTNPRMI---DQQKWQSLVAQEQMRIASLGEKEKLRIRRPTRVSPQVNIRY 234 Query: 245 KGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLR----LII 300 Q + + P I + N +G L +Y+ KP + P + ++ Sbjct: 235 TA-QNRYHVSAALPFILI----NPEPDVKIGTLPDYE--------KPDSHPRKRDYDFLV 281 Query: 301 PRLHL 305 RL+L Sbjct: 282 DRLYL 286 >UniRef50_Q8L2D8 Predicted trans-acting tus protein n=1 Tax=Proteus vulgaris RepID=Q8L2D8_PROVU Length = 294 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 83/286 (29%), Positives = 130/286 (45%), Gaps = 28/286 (9%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSL 69 + TF ++E LA+ L Q L ARV +P V DE P+NRIE + G A Sbjct: 3 IAETFHRLEDSLALLKRVLAQKSPLYARVCVIPPVADGDETLPVNRIEPELLYGAQAIEQ 62 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQ-AALVSHIQHINKLKTTF-EHI 127 + F L I+ S K+ R GVL Y + A +++ I IN +K + EHI Sbjct: 63 TQKAFTDLHIKD---GLSQKSTRRTAGVLWYDDETPEFAAEVMALITSINAIKLSIQEHI 119 Query: 128 VTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLH--DPATLRFGWANKHIIKNLHRDE 185 +T S ARF +H PG++TL+ YR + H D ++RF W K +++ + + Sbjct: 120 ITGFSS--QNARFSALHNACPGVMTLHLYRQIRAWHKADIQSIRFSWQKKSLLRIPDKAK 177 Query: 186 VLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYK 245 +LA ++ + V Q IA PQ+ KL+++RP K+QP+A + ++ Sbjct: 178 LLASMQADVIDNSEVTVPVGN--------LAQRIANTPQD-KLRLRRPAKIQPVANIQFR 228 Query: 246 GD-----QKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQ 286 D P I + N+ +V L NY ++Q Sbjct: 229 ADIEGEPPTLKTVTALMPYIIIQNQR-----LEVKPLQNYSPRDIQ 269 >UniRef50_Q7A236 Ter binding protein n=2 Tax=root RepID=Q7A236_PROVU Length = 294 Score = 239 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 78/303 (25%), Positives = 131/303 (43%), Gaps = 27/303 (8%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSL 69 L TF Q+ +L + L ++V +P V + DEH P++ + G++A Sbjct: 3 LKKTFEQLTDDLLALKMLISGSSPLFSQVSDIPPVLRGDEHLPISYVAPDHLYGHEAIQK 62 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCY-QVDNLSQAALVSHIQHINKLKTTFE-HI 127 A+ + L I+ + S K+A R GVL + DN LV + IN LK + E HI Sbjct: 63 AVDIWSDLHIKH---DFSQKSARRASGVLWFPSEDNAFTVELVRLLSQINALKKSIETHI 119 Query: 128 VTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDP--ATLRFGWANKHIIKNLHRDE 185 +T +ARFE +H G++TL+ YR + D + +RF W K + + E Sbjct: 120 ITTYQT--RSARFEALHNQCAGVLTLHLYRQIRWWKDEHISAVRFSWQEKESLLIPDKAE 177 Query: 186 VLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYK 245 +L ++ K + + + L + I ++P+ + +KVQP A + ++ Sbjct: 178 LLVRMSKEGREDG--------KKEVPLALLMKQIVSVPEERLRIRR-RLKVQPSANISFR 228 Query: 246 GDQ----KQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIP 301 +Q K P P I + N P+V L YDA+ R + + I+ Sbjct: 229 SEQHPTGKLTMVTAPMPFIIIQNER-----PEVKMLKIYDANERISRKRRNDKVHTEILG 283 Query: 302 RLH 304 H Sbjct: 284 TFH 286 >UniRef50_A0L2U6 Site-binding protein, DNA replication region n=1 Tax=Shewanella sp. ANA-3 RepID=A0L2U6_SHESA Length = 290 Score = 233 bits (595), Expect = 5e-60, Method: Composition-based stats. Identities = 72/283 (25%), Positives = 123/283 (43%), Gaps = 22/283 (7%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDE--HNPLNRIEVKQHLGNDAQ 67 L+ + ++ L L+ + + A V +P V K E P I V++ LG A Sbjct: 6 LSDNYEVIQSTLLQLNHLLDSNTPVRASVTPVPPVMKSAEKVREPETVISVRETLGLAAV 65 Query: 68 SLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHI 127 + A + L I S ++A R PGVL Y L ++ I IN KT E Sbjct: 66 TKAKLAYGDLHIHPDY---SQRSARRTPGVLWYSTSPLVTNKVMDVIARINLAKTAIEKE 122 Query: 128 VTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPA-TLRFGWANKHIIKNLHRDEV 186 +T + A RFE + PG++ L+ YR + ++P + RF W K ++ + +D++ Sbjct: 123 ITTKYST-RADRFEKLREVCPGVMALHLYRQIRCFNEPMTSARFSWLCKDVVSKVDKDKL 181 Query: 187 LAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKG 246 L +L +K +E +L Q+I + P+ A ++ +R ++ QP+A + G Sbjct: 182 LERLNADIKR-------LGDECPSQLLLLKQNILSTPE-AMIRARRDIQPQPVANLMING 233 Query: 247 DQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRY 289 K V PLI L + ++ L +DA + Sbjct: 234 KVKTV--TATMPLIVLQSE-----PLEIKPLTTFDASVKRGTR 269 >UniRef50_A6FFP0 Putative DNA replication terminus site-binding protein (Ter bindingprotein) n=1 Tax=Moritella sp. PE36 RepID=A6FFP0_9GAMM Length = 326 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 71/263 (26%), Positives = 125/263 (47%), Gaps = 23/263 (8%) Query: 5 DLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGN 64 +L ++L T +Q+E+ LA + + A V +P V K E +N+I + Sbjct: 44 NLFEQLTTKLQQLEKLLAT-------TQPVQALVSRIPAVLKGQEQAVINQIMPELVTDM 96 Query: 65 DAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTF 124 A LA F+ + I+ S K+A R G++ +N + A +V+ I+ IN +K Sbjct: 97 LAMKLAAEAFKDIHIKHPF---SQKSARRYVGIIHLHPENQNSAKIVTSIEDINTIKGAI 153 Query: 125 EHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDP--ATLRFGWANKHIIKNLH 182 EH V E+E ARF +H + PG++T++ YR + L + ++RF W K + Sbjct: 154 EHAVVSENE-SRQARFSAIHDNCPGVMTVHLYRKIHCLENEYVKSVRFSWQRKDSLHQPD 212 Query: 183 RDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARV 242 + ++L ++ + + Q L + +Q IA ++ +L+++RPVKVQP A + Sbjct: 213 KIKLLGEITAEKERAT-------PDNQLALTQLHQQIATTAEH-QLRVRRPVKVQPAANI 264 Query: 243 WYKGDQKQVQHACPTPLIALINR 265 K V P P+I + Sbjct: 265 VKVTGLKTV--TAPLPIIVVQKE 285 >UniRef50_A3JJE4 DNA replication terminus site-binding protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3JJE4_9ALTE Length = 308 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 20/297 (6%) Query: 5 DLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGN 64 D + ++ +E+ A L Q + R++ +P +E+E P+ I G Sbjct: 9 DTLQKIVLAVECLERLCADAKLLLMQANPVQCRIYQIPRTVRENESQPVTDIHPTDLSGT 68 Query: 65 DAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTF 124 +A + AL + Q S+K R+PG L N+ ++ ++ + IN+ KT Sbjct: 69 EAFNAALHALTDWYGHPQY---STKVVNRVPGALVL--ANVDESQVLDRMAEINRSKTAI 123 Query: 125 EHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLR---FGWANKHIIKNL 181 E ++ S RFE +H H P LI R L VL L+ F W K IK + Sbjct: 124 ESLI--PSLGNRDDRFELLHGHFPWLILAQLTRRLQVLPCSPPLQSCTFTWGIKTEIKKM 181 Query: 182 HRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIAR 241 D+V +LE + PRS W K++RE I +LP +A+L+ +R ++V+P+A Sbjct: 182 TADQVCERLELFRQRPRSTI--DDVPWDIKIDREIMSIRSLPASAQLRSRRVLRVRPLAN 239 Query: 242 VWYKGDQK----QVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQ 294 + Y + TP++ L N +G L NYD R + + + Sbjct: 240 LRYHANDGEPAETYMREAHTPILIL----NPIRPIKLGVLKNYDVQTRSGRQRLKDR 292 >UniRef50_C1MF14 DNA replication terminus site-binding protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MF14_9ENTR Length = 296 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 76/299 (25%), Positives = 131/299 (43%), Gaps = 32/299 (10%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSL 69 ++TTF+ +E E+ L L A V LP V +E + I + G+DA Sbjct: 3 ISTTFQTLESEITQLRGVLGSRLPLKASVCVLPAVADGEEDMAIEHIMPELKQGHDAVHA 62 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSH-IQHINKLKTTFE-HI 127 A + L I+ S K+A R GVL Y + + LV+ + IN+ K + + HI Sbjct: 63 ACAAYADLHIRD---GYSQKSARRTTGVLWYDNTDAEFSQLVTRLVTSINQHKESIQRHI 119 Query: 128 VT--VESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPAT--LRFGWANKHIIKNLHR 183 + P RF +H PG++TL+ YR L + + + FGW K + +++ Sbjct: 120 IENYGGDRRPEYMRFNALHSACPGVMTLHLYRQLRMFDNANVNLVSFGWRQKTLFSRVNK 179 Query: 184 DEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVW 243 E+L ++ K ++ E+ +L + IA +P+ KL+++RPVKV P A + Sbjct: 180 IELLQKMGKDIEE--------DEDKSVRLNSLIKAIARVPEE-KLRLRRPVKVHPAANIA 230 Query: 244 YKGDQK-----QVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLR 297 + ++ A P I + + L + A+ V KP++ L+ Sbjct: 231 MADPEHPDQILRLSAASSMPFIIIQDEHVKIRP-----LPEFVANEV----KPRSNRLK 280 >UniRef50_A9CZ55 DNA replication terminus site-binding protein n=1 Tax=Shewanella benthica KT99 RepID=A9CZ55_9GAMM Length = 314 Score = 206 bits (524), Expect = 8e-52, Method: Composition-based stats. Identities = 61/265 (23%), Positives = 125/265 (47%), Gaps = 24/265 (9%) Query: 15 RQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHF 74 RQ+EQ + L +H V FS+P +K +E +I+V Q +A F Sbjct: 17 RQLEQAVTKMLIVLGKHSPEVIG-FSIPSFEKREEDEQPEQIQV--------QPVADFSF 67 Query: 75 RHLFIQQ--QSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVES 132 H Q +++ R PGV+ + + + ++ I IN+LK F V + Sbjct: 68 THTAFSQWLAPVGANTRLVKRYPGVV---ILSSGEQQIIPLISEINRLKDEFAKAVRLGF 124 Query: 133 ELPTAARFEWVHRHLPGLITLNAYRTLT-VLHDPATLRFGWANKHIIKNLHRDEVLAQLE 191 + +A E +H+ +PG++ A R + ++ +++ F WA++ ++K + +++ LA ++ Sbjct: 125 KNRQSAH-ENLHKIIPGILLQQATRKIHHLVQTVSSVNFYWAHRPMVKEITKEQALADID 183 Query: 192 KSLKSPR-SVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQ 250 ++L+S R + + E +++ + E I+ +P +A++ +R +VQP +W K + Sbjct: 184 RALESKRYDLTMLNKTEIEQRTQHEKSLISRIPADARIIERRIARVQPCYDIWIKASGSK 243 Query: 251 V-------QHACPTPLIALINRDNG 268 + P + + R NG Sbjct: 244 TATKLGSKNASLPVIIFGKVGRYNG 268 >UniRef50_UPI000190F113 DNA replication terminus site-binding protein n=4 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190F113 Length = 134 Score = 159 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 95/134 (70%), Positives = 113/134 (84%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 M+RYDLV+RLN TFRQ+EQ LA + +L+QH LL+A VFSLP+V KE EH PL+ IEV Q Sbjct: 1 MSRYDLVERLNGTFRQIEQHLAALSDNLQQHSLLIASVFSLPQVTKEAEHAPLDTIEVTQ 60 Query: 61 HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKL 120 HLG +A++LALRH+RHLFIQQQSENRSSKAAVRLPGVLCYQVDN +Q L + +Q IN+L Sbjct: 61 HLGKEAEALALRHYRHLFIQQQSENRSSKAAVRLPGVLCYQVDNATQLDLENQVQRINQL 120 Query: 121 KTTFEHIVTVESEL 134 KTTFE +VTVES L Sbjct: 121 KTTFEQMVTVESGL 134 >UniRef50_C0B3V4 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B3V4_9ENTR Length = 156 Score = 157 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 76/131 (58%), Positives = 102/131 (77%) Query: 177 IIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKV 236 ++KNL R+EVLAQLEKS ++ R+V P+T E+W +L++E ++ LP+NAKLKIKRPVKV Sbjct: 24 LLKNLTRNEVLAQLEKSREANRAVPPYTSEQWAERLDKEIITLSQLPENAKLKIKRPVKV 83 Query: 237 QPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPL 296 QPIARVWY QKQVQ+ACP PL+A P +GEL +YDADN+Q R++P+A+ L Sbjct: 84 QPIARVWYSELQKQVQYACPLPLLAFYIDKENDFKPIIGELPDYDADNIQIRHRPKAKKL 143 Query: 297 RLIIPRLHLYV 307 +LIIPR+HLY+ Sbjct: 144 QLIIPRMHLYL 154 >UniRef50_C0B3V3 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B3V3_9ENTR Length = 116 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 66/111 (59%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 + +YDL+++ N F+ +E E+ + L + LL + VF LP+V KE+EH+ + + V Sbjct: 3 VNKYDLIEQFNRCFKLLETEIEALSTSLRKLTLLPSAVFELPDVSKEEEHDEVAYVTVSP 62 Query: 61 HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALV 111 DA +L L+ +LFI + + SSK A+RLPGVLC+ +N + ++ Sbjct: 63 SYNEDALNLTLKLIANLFIYDNAPHISSKRAIRLPGVLCFSTNNQTFKSVK 113 >UniRef50_C4XDE4 Putative uncharacterized protein n=3 Tax=Klebsiella pneumoniae RepID=C4XDE4_KLEPN Length = 319 Score = 84.0 bits (206), Expect = 5e-15, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 118/312 (37%), Gaps = 39/312 (12%) Query: 19 QELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLF 78 ++L + L + + + +LPE + +E NP I V + + + +R Sbjct: 14 RKLGELHSLLRHSDIGSSYLATLPEPRSVEELNPPQEINVTHSVPD--VDTLVDIYRQQR 71 Query: 79 I---QQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELP 135 + + E+ S+K + PG + V + ++S + IN+L+ F V + Sbjct: 72 VDKVHVRDEHYSTKITRKYPG---FVVVRNNHDQVMSLVGEINRLRDKFAEAVKAITHY- 127 Query: 136 TAARFEWVHRHLPGLITLNAYRTLTVL-HDPATLRFGWANKHIIKNLHR-DEVLAQLEKS 193 +R E +H+ P L+TL R + ++ +L F W +I R + V+ +L + Sbjct: 128 QDSRSEILHQVYPWLVTLQVSRNIRIVTEQIRSLGFTWQI-PVIHKFTRLETVIDRLRRE 186 Query: 194 LKSPRSVAPWTREEWQRKLEREYQDIAALP--------QNAKLKIKRPVKVQ--PIARVW 243 + + T+++ +R + ++I L + + R ++ P V Sbjct: 187 ITELQPDISLTKQDVERLKQERTEEIMMLSLLNDEVSHDDESSRKFRLIRESNFPAVNVN 246 Query: 244 YK----------GDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQA 293 + ++ P PLI + L NY Q R Sbjct: 247 IRYTSPEDPDDVHGPYKLNFRAPLPLILF------SEPGRFNPLKNYVKGERQKRGDV-N 299 Query: 294 QPLRLIIPRLHL 305 + R ++PR+ L Sbjct: 300 EKYRSVLPRIGL 311 >UniRef50_B5EVU5 DNA replication terminus site-binding protein (Ter protein) n=1 Tax=Vibrio fischeri MJ11 RepID=B5EVU5_VIBFM Length = 326 Score = 83.7 bits (205), Expect = 7e-15, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 107/262 (40%), Gaps = 19/262 (7%) Query: 15 RQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDE-----HNPLNRIEVKQHLGNDAQSL 69 ++E E+ + + Q KL+ A V +LP + + H+ + I + G DA Sbjct: 28 DKIEIEIQNLSHLIRQGKLIHAEVAALPIAEITQDGIDTVHHEIETIYPIRLYGKDAVEA 87 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIV- 128 LR+ ++ + + S K A R G++ ++ + + + + IN+LK ++ + Sbjct: 88 YLRNIQYQYKHS---DLSPKGARRCVGIIHVSGNSEYEENVKNKVFLINQLKAEIKNYLS 144 Query: 129 TVESELPTAARFEWVHRHLPGLITLNAYRTLTVL-HDPATLRFGWANKHIIK-NLHRDEV 186 S +F + + G++ R L + + A + F W NK ++ ++ Sbjct: 145 RCCSTARQRQKFYQLSQV--GVLPKTVTRKLHLANPNVAYVSFSWLNKGYLQEKINHKRA 202 Query: 187 LAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKG 246 L + K + ++A + +L + + + + + RP K+ P + Y Sbjct: 203 LDIVHK---ANANIAEKNEDISVHELNAKDELKLSSFETRDIIWIRPSKLNPRFKCSYFI 259 Query: 247 DQKQVQ---HACPTPLIALINR 265 + K Q +PL+ + N Sbjct: 260 NDKTYQDEPIRATSPLLIVQNS 281 >UniRef50_Q19NN4 Putative DNA replication termination protein n=8 Tax=Enterobacteriaceae RepID=Q19NN4_ECOK1 Length = 326 Score = 73.6 bits (179), Expect = 7e-12, Method: Composition-based stats. Identities = 46/292 (15%), Positives = 102/292 (34%), Gaps = 30/292 (10%) Query: 15 RQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHN-PLNRIEVKQHLGNDAQSLALRH 73 Q+ + + L L+A + ++ V + +E + I V + + ++ Sbjct: 17 DQILERIDSLKCFLSNTPPLMANLMTVSTVSRTEERLKQVKPIRVS-VKDDASVEEIIQA 75 Query: 74 FRHLFIQQ--QSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVE 131 + + + S+K + PG++ + L S I IN+ K F + Sbjct: 76 LTDICVDDIESLSHDSTKVTTKYPGLI---IVPERADLLESLITSINEAKNDFAAAMRRI 132 Query: 132 SELPTAARFEWVHRHLPGLITLNAYRTLTVLHDP-ATLRFGWANKHIIKNLHRDEVLAQL 190 RF+ VH+ LPGL+ +++ R + + + F W + +++++ L Sbjct: 133 D-NKKNVRFDKVHKKLPGLVAMHSTRNVLFIKSQLKKVTFSWRLNRNQEVKTAEQLVSLL 191 Query: 191 EKSLKSPRSVAPWTREEWQRKLEREYQDIAALP---QNAKLKIKRPVKVQPIARVWYKGD 247 E+ S T +++ + P + + PIA ++ Sbjct: 192 ERRRASEVKNVATTNLNVVSNIDKALHRLEFHPLKQGESYRLCRTNSFPVPIAHIFAFRP 251 Query: 248 QKQVQ------------HACPTPLIALINRDNGAGVPDVGELLNYDADNVQH 287 + Q + P+ A N +P + L ++ +N Q Sbjct: 252 EGQERNGNKYAETDYSVVKASLPIFAAGN------IPQLKTLSDWAPENSQG 297 >UniRef50_A0L360 Site-binding protein, DNA replication region n=1 Tax=Shewanella sp. ANA-3 RepID=A0L360_SHESA Length = 290 Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 108/304 (35%), Gaps = 38/304 (12%) Query: 14 FRQMEQELAIFAAHLEQHKLLVAR----VFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSL 69 F + +L + L H A + + ++ +V+ A+ Sbjct: 11 FDVLYNKLTLELIELASHLPDAASNQSFFYKITPSP-----QTFDKFKVELFSDIKARGW 65 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVT 129 + + + S R+S PGV+ + + + I+ IN K + +++ Sbjct: 66 IASSLTQMTLSEDSIGRTSI----TPGVIIFP--HSEYNHINQLIEKINNTKDNIQALLS 119 Query: 130 VESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDP--ATLRFGWANKHIIKNLHRDEVL 187 A + ++ R + VL +T+ W + ++ L + Sbjct: 120 THDLHKLRATLARQNTLCSLVM---LTRKIHVLKCEEKSTISVSWYMRSGMRVLKEKDFS 176 Query: 188 AQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGD 247 +++K++++ + E+ ++ + + +IKR + I +W G Sbjct: 177 TRIQKAVQNN-ILEFSKGNEYLEIFQKNQK-------SHSFRIKRNIIPTTIYNIWKAGS 228 Query: 248 QK-QVQHACPTPLIALINRDNGAGVPDVGEL-LNYDADNVQHRYKPQAQP-LRLIIPRLH 304 K ++Q+ TPL + D V L NY R A P L+IP LH Sbjct: 229 SKEKLQYNGQTPLFVFSDYD-----IKVKHLESNYGTKTRSKRN--DATPDTDLLIPELH 281 Query: 305 LYVA 308 +Y++ Sbjct: 282 IYMS 285 >UniRef50_B7XGI4 Replication terminus site binding protein n=2 Tax=Pseudomonas RepID=B7XGI4_PSEPU Length = 323 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 54/273 (19%), Positives = 98/273 (35%), Gaps = 33/273 (12%) Query: 49 EHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQA 108 E +RI V+ G DA A+ R ++ ++ +RLPG Sbjct: 40 EQRTPSRINVQVLTGTDAIKAAVEALREF---ERDLGQAPGTVLRLPGYFILSGS----- 91 Query: 109 ALVSHIQHINKLKTTFEHIVTVESELPTAA---RFEWVHRHLPGLITL-NAYRTLTVLHD 164 ++ + +N+ K+ + E A R + + L +L R + V Sbjct: 92 -ILDEGRAVNRCKSELVDAIEAERVFRNVAVSRRSHIMRQALGKNFSLNQLKRAIQVFDA 150 Query: 165 -PATLRFGWANKHIIK-NLH----RDEVLAQL-EKSLKSPRSVAPWTREEWQRKLEREYQ 217 P + F WA K + R+ +LA+ EKS+ + +W + + Sbjct: 151 APRQITFTWAGHTSGKERVTVGHVREVLLAEAHEKSMATGE--PVVNSPQW-----IDLR 203 Query: 218 DIAALPQNAKLKIKRPVKVQPIARVWYKGDQK-QVQHACPTPLIALINRDNGAGVPDVGE 276 IA + + L + +P+ P A +W+ + P L D VG Sbjct: 204 SIANMAETDMLDVPKPIAPHPRAMLWFSERSRYDAMLHANLPFFVL---DGQPAARIVG- 259 Query: 277 LLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD 309 L N+D D+ + +P + +P +VA Sbjct: 260 LKNFDRDSRSAK-RPDVKQRLPALPGGRFFVAS 291 >UniRef50_C9P141 Putative uncharacterized protein n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P141_VIBME Length = 291 Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 108/298 (36%), Gaps = 35/298 (11%) Query: 5 DLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLG- 63 DL + +T Q++ + L KL+ V +P+ ++ E P I K+ Sbjct: 4 DLDIDIESTVMQLKDQEQELYNFLIALKLIQKHVQDVPQFQRG-EALPPT-IHAKRLDSM 61 Query: 64 --NDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLK 121 ++A +++ + R G++ + + + IN+L+ Sbjct: 62 PLHEALRVSIEPQKVFEYPHNIP-------KRFAGLIQLEANEKEYEQAQALTHQINELR 114 Query: 122 TTFEH-IVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPAT-LRFGW-ANKHII 178 T + I E++ AR R P + R + +L D +T + F W + + Sbjct: 115 ATIVNYIAEKETDYRKRARLS--QRLFPDTLYQTVNRKIPLLPDTSTRIDFSWCEQQKSV 172 Query: 179 KNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQP 238 K L ++ ++ L++ WQ E L +A V+ P Sbjct: 173 KKLSTEQAVSMLQRF--------DANTPPWQAAKNME-----RLMNSASAYKVTNVRTHP 219 Query: 239 IARV-WYKGDQKQV---QHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHR-YKP 291 A V +Y + +V +P+IALI V + + D ++ + YKP Sbjct: 220 QALVKYYNEETGEVFVETRKVHSPMIALIQSRQPMEVSPLPDFQENDKKHLLLKGYKP 277 >UniRef50_Q1N4Y0 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N4Y0_9GAMM Length = 290 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 88/273 (32%), Gaps = 49/273 (17%) Query: 57 EVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQH 116 E ++ LG A F+ + + R +++ C+ + + L + + Sbjct: 37 ETEKSLGWHPLDKAKHFFQDFWYLDGQDGRETRS--------CFGMITIDDEQL-ALVTQ 87 Query: 117 INKLKTTFEHIVTVESELPTAA----------RFEWVHRHLP--GLITLNA---YRTLTV 161 IN LK F+ + A R + L GL L+ +RTL V Sbjct: 88 INNLKLDFKKAIDQLKRSQRQAWTDVRKDLGQRHPLLREQLHYSGLTRLHLKQTWRTLPV 147 Query: 162 LH-DPATLRFGW-ANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDI 219 + + F W + I+ + + L K + R ++ + + Sbjct: 148 IDRSITRIGFNWYQSGRSIQKITVQQAYDALSK------------MDTGSRHIQTQLNQL 195 Query: 220 AALPQNAKLKIKRPVKVQ---PI--ARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDV 274 LP L KVQ P+ A ++Y+ + PL+ N Sbjct: 196 GRLPSTTPL-----AKVQTLAPVMRANIFYETAPLRQAMNVSLPLLIHGNTGLPPHNIPD 250 Query: 275 GELLNYDADNVQHRYKPQAQPLRLIIPRLHLYV 307 E + +K + Q I R+H YV Sbjct: 251 MEPPAERQRARRSDFKIEEQAFLPSI-RVHRYV 282 >UniRef50_Q3JAL9 Putative uncharacterized protein n=2 Tax=Nitrosococcus oceani RepID=Q3JAL9_NITOC Length = 295 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 97/267 (36%), Gaps = 25/267 (9%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSL 69 +N Q+ LA HLE A++ L + KE+E PL K A+ Sbjct: 1 MNNVNSQLRATLATAMHHLE------AQLGVLDRLLKEEESYPLWVWHEKDPS--KARLQ 52 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVD-----NLSQAALVSHIQHINKLKTTF 124 + + + + S++ L GV C ++ N ++A L ++ I+ +K Sbjct: 53 VRQIVTAIDYRDGQDPVSTRICPALVGVSCATLEAIRHANQAKADLQKALKSIDGIKIEE 112 Query: 125 EHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVL-HDPATLRFGWANKHIIKNLHR 183 ++ T L + L A R +L P ++ F W+ I+++ Sbjct: 113 QNQETGTFLLRPLIKIALASLGHARLHRRQATRKFVILEQTPESVSFIWSRLPKIESIDI 172 Query: 184 DEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVW 243 +E +LE L+ + + + + L N +L I P + P A + Sbjct: 173 EEARRRLEARLEKVQGNPVLIKAD--------LSRLDRLVSNERLAIVNPPHIHPRANIA 224 Query: 244 YKGDQKQV---QHACPTPLIALINRDN 267 + ++K Q P+ R + Sbjct: 225 WTIEKKTTRRGQKRAVLPIFYPSTRYD 251 >UniRef50_Q2BNN0 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BNN0_9GAMM Length = 278 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 39/206 (18%) Query: 108 AALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHL--------PGLITLNA---Y 156 + + +Q IN+ K F+ + E R GL L+ Y Sbjct: 74 PSFIPLLQQINQKKLFFKQAIQDYREQNKEPGPFLFKRACELNLGLSKSGLARLHLKQCY 133 Query: 157 RTLTVLH-DPATLRFGW-ANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLER 214 RTL +L P + F W + K L + L +L K + Q ++ Sbjct: 134 RTLPILESCPDKVTFSWYTSGKSQKKLSVKQALERLMK------------MDTGQIHIQM 181 Query: 215 EYQDIAALPQNAKLKIKRPVKVQ---PI--ARVWYKGDQKQVQHA--CPTPLIALINRDN 267 + + + L ++ L V++Q P+ A + ++ V+ A CP PL ++ D Sbjct: 182 QIEALNKLSESEPL-----VQIQNQVPVIRANIAWRSGTDWVRKARNCPLPLFFPMSEDK 236 Query: 268 GAGVPDVGELLNYDADNVQHRYKPQA 293 P+ + +++ + Sbjct: 237 PF--PEYNTPALTPPEKRSRQFRADS 260 >UniRef50_A1SVY6 Predicted primosomal replication protein N'' n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SVY6_PSYIN Length = 241 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 22/176 (12%) Query: 6 LVDRLNTTFRQMEQELAIFAAHL---EQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHL 62 L + L T ++ Q LA F+A + + K + VFSL + + + I V Sbjct: 14 LKENLLKTVAEVRQALADFSAVILLQDNDKQRQSVVFSLIDRA----DDQIEFI-VDSFF 68 Query: 63 GNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKT 122 A L+ + +Q+ SE + K A + L L HI IN K Sbjct: 69 AQSAIQETLQFIKSFELQKGSEQDTKKLAG-------FIQTALPVEVLDLHITRINSAKD 121 Query: 123 TFEHIVTV--ESELPTAA--RFEWVHRHL--PGLITLNAYRTL-TVLHDPATLRFG 171 + I+T ++++ A RF +VH +T YR L + ++ FG Sbjct: 122 RCKKIITSIKDNDVRKQADKRFYFVHSVCGFSHFVTNELYRHLVHITEPVDSIYFG 177 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B5XRE3 DNA replication terminus site-binding protein n=... 348 1e-94 UniRef50_A7FHW9 DNA replication terminus site-binding protein n=... 341 2e-92 UniRef50_D2TZG3 DNA replication terminus site-binding protein n=... 315 8e-85 UniRef50_D1NYQ1 DNA replication site-binding protein n=4 Tax=Pro... 293 5e-78 UniRef50_A0KM73 DNA replication terminus site-binding protein n=... 253 4e-66 UniRef50_C4NV60 Ter n=11 Tax=Gammaproteobacteria RepID=C4NV60_ECOLX 240 6e-62 UniRef50_Q8L2D8 Predicted trans-acting tus protein n=1 Tax=Prote... 232 1e-59 UniRef50_Q7A236 Ter binding protein n=2 Tax=root RepID=Q7A236_PROVU 228 1e-58 UniRef50_A0L2U6 Site-binding protein, DNA replication region n=1... 220 5e-56 UniRef50_A3JJE4 DNA replication terminus site-binding protein n=... 220 6e-56 UniRef50_A0Y2M9 DNA replication terminus site-binding protein n=... 218 1e-55 UniRef50_A6FFP0 Putative DNA replication terminus site-binding p... 215 2e-54 UniRef50_C1MF14 DNA replication terminus site-binding protein n=... 210 6e-53 UniRef50_A9CZ55 DNA replication terminus site-binding protein n=... 189 1e-46 UniRef50_B5EVU5 DNA replication terminus site-binding protein (T... 178 3e-43 UniRef50_C4XDE4 Putative uncharacterized protein n=3 Tax=Klebsie... 171 4e-41 UniRef50_Q19NN4 Putative DNA replication termination protein n=8... 171 4e-41 UniRef50_A0L360 Site-binding protein, DNA replication region n=1... 168 3e-40 UniRef50_Q3JAL9 Putative uncharacterized protein n=2 Tax=Nitroso... 157 5e-37 UniRef50_C9P141 Putative uncharacterized protein n=1 Tax=Vibrio ... 156 9e-37 UniRef50_B7XGI4 Replication terminus site binding protein n=2 Ta... 152 2e-35 UniRef50_Q1N4Y0 Putative uncharacterized protein n=1 Tax=Bermane... 144 3e-33 UniRef50_UPI000190F113 DNA replication terminus site-binding pro... 143 8e-33 UniRef50_C0B3V4 Putative uncharacterized protein n=1 Tax=Proteus... 141 3e-32 UniRef50_C0B3V3 Putative uncharacterized protein n=1 Tax=Proteus... 114 5e-24 Sequences not found previously or not previously below threshold: UniRef50_A4BHM1 Putative uncharacterized protein n=1 Tax=Reineke... 86 2e-15 UniRef50_Q2BNN0 Putative uncharacterized protein n=1 Tax=Neptuni... 83 1e-14 UniRef50_Q1QX76 Putative uncharacterized protein n=1 Tax=Chromoh... 71 4e-11 UniRef50_A4V827 Putative uncharacterized protein n=1 Tax=Pseudom... 69 1e-10 UniRef50_A8PMI4 Putative uncharacterized protein n=1 Tax=Rickett... 58 5e-07 UniRef50_A3JI28 Putative uncharacterized protein n=1 Tax=Marinob... 53 2e-05 UniRef50_A1SVY6 Predicted primosomal replication protein N'' n=1... 46 0.001 >UniRef50_B5XRE3 DNA replication terminus site-binding protein n=130 Tax=Enterobacteriaceae RepID=TUS_KLEP3 Length = 310 Score = 348 bits (892), Expect = 1e-94, Method: Composition-based stats. Identities = 221/309 (71%), Positives = 250/309 (80%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 MA YDLV+RLN TFRQ+E EL L +LL ARVF LP V K+ EH+PL I V Q Sbjct: 1 MASYDLVERLNDTFRQIELELQTLQQALSSCRLLAARVFELPAVSKDAEHDPLANIPVVQ 60 Query: 61 HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKL 120 H G A +LALRH+ HLFIQQQSENRSSKAAVRLPG +C QV Q L + IQHIN L Sbjct: 61 HSGKAALALALRHYSHLFIQQQSENRSSKAAVRLPGAICLQVTAAEQQDLQARIQHINAL 120 Query: 121 KTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKN 180 K TFE IVTV+S LP ARFEWVHRHLPGLITL+AYRTLT L DP+T+RFGWANKH+IKN Sbjct: 121 KATFEKIVTVDSGLPPTARFEWVHRHLPGLITLSAYRTLTPLIDPSTIRFGWANKHVIKN 180 Query: 181 LHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIA 240 L RD+VL LEKSL+SPR+V PWTRE+WQ KLEREYQDIAALPQ A+LKIKRPVKVQPIA Sbjct: 181 LTRDQVLMMLEKSLQSPRAVPPWTREQWQSKLEREYQDIAALPQRARLKIKRPVKVQPIA 240 Query: 241 RVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLII 300 RVWY +QKQVQ+ACP+PLIALI+ G VPD+GELLNYDADNVQ+RYKP+AQ LRL+I Sbjct: 241 RVWYASEQKQVQYACPSPLIALISGSQGVSVPDIGELLNYDADNVQYRYKPEAQSLRLLI 300 Query: 301 PRLHLYVAD 309 PRLHL++A Sbjct: 301 PRLHLWLAS 309 >UniRef50_A7FHW9 DNA replication terminus site-binding protein n=32 Tax=Enterobacteriaceae RepID=TUS_YERP3 Length = 311 Score = 341 bits (874), Expect = 2e-92, Method: Composition-based stats. Identities = 165/307 (53%), Positives = 221/307 (71%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 M +YDL++R+NT F ++E L L+ L+ ARVFSLPE++K EH P+ +I V Sbjct: 1 MNKYDLIERMNTRFAELEVTLHQLHQQLDDLPLIAARVFSLPEIEKGTEHQPIEQITVNI 60 Query: 61 HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKL 120 G A+ L L+HF+ LF+ Q ++ SSKAA+RLPGVLC+ V + I+ N+L Sbjct: 61 TEGEHAKKLGLQHFQRLFLHHQGQHVSSKAALRLPGVLCFSVTDKELIECQDIIKKTNQL 120 Query: 121 KTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKN 180 K EHI+TVES LP+ RFE+VH HL GLITLN YRT+T L +P+++RFGWANKHIIKN Sbjct: 121 KAELEHIITVESGLPSEQRFEFVHTHLHGLITLNTYRTITPLINPSSVRFGWANKHIIKN 180 Query: 181 LHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIA 240 + R+++L QLEKSL + R+V P+TRE+W+ + E D+ LP+ +LKIKRPVKVQPIA Sbjct: 181 VTREDILLQLEKSLNAGRAVPPFTREQWRELISLEINDVQRLPEKTRLKIKRPVKVQPIA 240 Query: 241 RVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLII 300 RVWY+ QKQVQH CP PLIA R +GA +P +GEL +YD +++H+YKP A+PLRL++ Sbjct: 241 RVWYQEQQKQVQHPCPMPLIAFCQRQSGAELPKLGELTDYDVKHIKHKYKPDAKPLRLLV 300 Query: 301 PRLHLYV 307 PRLHLYV Sbjct: 301 PRLHLYV 307 >UniRef50_D2TZG3 DNA replication terminus site-binding protein n=1 Tax=Arsenophonus nasoniae RepID=D2TZG3_9ENTR Length = 309 Score = 315 bits (808), Expect = 8e-85, Method: Composition-based stats. Identities = 125/304 (41%), Positives = 196/304 (64%), Gaps = 2/304 (0%) Query: 3 RYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHL 62 +YD +L+ F ++ LA F L L A VF LPE KK DE+N +N+I + Sbjct: 5 KYDARYKLSKCFDLLKVRLADFLTELNSLSLTSAIVFKLPETKKGDENNDINQITITTLT 64 Query: 63 GNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKT 122 G+ A LAL ++ LFI + S+K A+RLPG LC+ + + + ++ INKLKT Sbjct: 65 GDTALDLALANYNRLFIHDNPYHISNKTAIRLPGALCFHLSAQRYSVIKRQLETINKLKT 124 Query: 123 TFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLH 182 + IVT ES + RFE++H+ L GLITLNAYR + + P ++ FGWANK I+ + Sbjct: 125 KLKDIVTCESGIKKEQRFEFIHQQLHGLITLNAYRKINYVDSPDSINFGWANKKIVNKVT 184 Query: 183 RDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARV 242 + ++L +L K+ +S ++++ +T+++W+ +E+E QDI ++P +A LKI+RPVKVQPIARV Sbjct: 185 KAQILERLHKNYRSEKAMSAYTKQQWRYLVEKEIQDINSIPNDAILKIQRPVKVQPIARV 244 Query: 243 WYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPR 302 WY +++QVQ+ACP PL++ + + +G L +YD +N++ ++KP+ + L+LII R Sbjct: 245 WYANEKRQVQYACPLPLLSF--SCDTKHLTKLGTLSDYDINNIKIKHKPKNKKLKLIIAR 302 Query: 303 LHLY 306 LHLY Sbjct: 303 LHLY 306 >UniRef50_D1NYQ1 DNA replication site-binding protein n=4 Tax=Providencia RepID=D1NYQ1_9ENTR Length = 302 Score = 293 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 130/300 (43%), Positives = 189/300 (63%), Gaps = 4/300 (1%) Query: 8 DRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQ 67 L T F Q+E + F HL + + A VFSLPEV K DEHN ++ I V +H+G DA Sbjct: 5 QELITHFNQLEFNINQFCHHLTKQDRIQACVFSLPEVLKGDEHNEVSSIFVDKHVGIDAI 64 Query: 68 SLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHI 127 + + F+ LFI +SE+ S+KAA+RLPG + + S I IN+LK + ++I Sbjct: 65 NHTIELFKLLFIHNKSESVSNKAAIRLPGAIVIEASLPDYHLFQSLITDINQLKLSIKNI 124 Query: 128 VTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGWANKHIIKNLHRDEVL 187 VT + RFE++ L GL+TLN YRT+T + D T+RFGWANK +I + ++++L Sbjct: 125 VTQVD---ESHRFEFIRESLHGLLTLNTYRTITSIVDVDTVRFGWANKKVINKVTQEQML 181 Query: 188 AQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGD 247 ++L+ SL+S R+ + RE WQ +LE E I +LP +A LK +RPVKVQPIARVW K Sbjct: 182 SRLQASLESGRTPSHMQREHWQLQLENEIALIRSLPHDAILKTQRPVKVQPIARVWDKES 241 Query: 248 QKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHLYV 307 QKQVQ+ C TPL+ + + VGEL +Y D + R++P+++P+ L+IPRL+LY+ Sbjct: 242 QKQVQYPCATPLLIFAVEKSLEDIT-VGELSDYHVDQIALRHRPRSKPVELLIPRLNLYI 300 >UniRef50_A0KM73 DNA replication terminus site-binding protein n=1 Tax=Aeromonas hydrophila subsp. hydrophila ATCC 7966 RepID=A0KM73_AERHH Length = 297 Score = 253 bits (647), Expect = 4e-66, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 145/309 (46%), Gaps = 17/309 (5%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 M + L ++EQ L AA LEQ +LL A V+ LP V + EH P+ +IEV Sbjct: 1 METFTPTAALRQQMERLEQALDSLAAQLEQLELLEAHVYPLPAVPQGQEHEPIEQIEVGY 60 Query: 61 HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKL 120 A + L +R S+KA RLPG L + L I +N Sbjct: 61 LGEEAALTATLSAYRD---HSARAGCSTKATHRLPGWLRFPA--ACAPLLRPLIDEVNGY 115 Query: 121 KTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDP-ATLRFGWANKHIIK 179 K F+ +V +FE VHR LPG+ITL YR LT L +L F WA+K I Sbjct: 116 KLAFKALVQQAGG--RDEKFELVHRALPGVITLQVYRKLTWLQGELHSLGFTWADKQSIS 173 Query: 180 NLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPI 239 L R++VL LE+S + +++ EEW + +++E DI LP +A+L+I+RPVK P+ Sbjct: 174 RLSREQVLEMLERSRRYIPALS--NNEEWSKMVDQEVYDIRRLPADAELRIRRPVKTHPM 231 Query: 240 AR-VWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRL 298 +W + ++ Q PL+ D V +G Y Q R + Sbjct: 232 INLLWQDREPRKQQLKASLPLLL--CSDTQPAVTHLGH---YPPKLRQARRDRKIGG-EP 285 Query: 299 IIPRLHLYV 307 II RLHLY+ Sbjct: 286 IIERLHLYL 294 >UniRef50_C4NV60 Ter n=11 Tax=Gammaproteobacteria RepID=C4NV60_ECOLX Length = 291 Score = 240 bits (611), Expect = 6e-62, Method: Composition-based stats. Identities = 78/287 (27%), Positives = 136/287 (47%), Gaps = 22/287 (7%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSL 69 ++ F M ++L ++ +++ A+V ++P K E+ P+N+I V + G +A L Sbjct: 6 ISEQFSAMCRDLTNLSSLIKRLPPRYAKVAAIPPTGKGMENEPVNKIVVTEQTGREALEL 65 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLS-QAALVSHIQHINKLKTTFEHIV 128 A +R L I + + S K+A R GVL + + + + ++ IN K E + Sbjct: 66 AAHSYRDLHI---NPDYSQKSARRTVGVLWFSPSRIGVADEIAATVERINAAKAGIEEFI 122 Query: 129 TVESELPTAARFEWVHRHLPGLITLNAYRTLTVL--HDPATLRFGWANKHIIKNLHRDEV 186 RFE + PG++TL+ YR + D ++RF W K +K ++E+ Sbjct: 123 ISTYPTRQE-RFEALRADCPGVMTLHLYRQIRCYTNGDIDSIRFTWQRKDSLKKPVKEEL 181 Query: 187 LAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKG 246 L ++ + L+ + ++Q LE+ Q IA+ P+ L+ +R VKVQP+A V G Sbjct: 182 LQRIREELER-------SGPDYQLPLEQLIQKIASTPE-PYLRERREVKVQPVANVMAAG 233 Query: 247 DQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQA 293 K V P PLI L ++D + L N+DA + +A Sbjct: 234 VLKTV--TAPMPLIVLQDKD-----VQLKLLRNFDASEQRKTRSDKA 273 >UniRef50_Q8L2D8 Predicted trans-acting tus protein n=1 Tax=Proteus vulgaris RepID=Q8L2D8_PROVU Length = 294 Score = 232 bits (591), Expect = 1e-59, Method: Composition-based stats. Identities = 84/304 (27%), Positives = 135/304 (44%), Gaps = 31/304 (10%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSL 69 + TF ++E LA+ L Q L ARV +P V DE P+NRIE + G A Sbjct: 3 IAETFHRLEDSLALLKRVLAQKSPLYARVCVIPPVADGDETLPVNRIEPELLYGAQAIEQ 62 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQ-AALVSHIQHINKLKTTF-EHI 127 + F L I+ S K+ R GVL Y + A +++ I IN +K + EHI Sbjct: 63 TQKAFTDLHIKD---GLSQKSTRRTAGVLWYDDETPEFAAEVMALITSINAIKLSIQEHI 119 Query: 128 VTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLH--DPATLRFGWANKHIIKNLHRDE 185 +T S ARF +H PG++TL+ YR + H D ++RF W K +++ + + Sbjct: 120 ITGFSS--QNARFSALHNACPGVMTLHLYRQIRAWHKADIQSIRFSWQKKSLLRIPDKAK 177 Query: 186 VLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYK 245 +LA ++ + V Q IA PQ+ KL+++RP K+QP+A + ++ Sbjct: 178 LLASMQADVIDNSEVTVPVGN--------LAQRIANTPQD-KLRLRRPAKIQPVANIQFR 228 Query: 246 -----GDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLII 300 P I + N+ +V L NY ++Q + + + +I Sbjct: 229 ADIEGEPPTLKTVTALMPYIIIQNQR-----LEVKPLQNYSPRDIQ---RSKDRLATEVI 280 Query: 301 PRLH 304 H Sbjct: 281 GTFH 284 >UniRef50_Q7A236 Ter binding protein n=2 Tax=root RepID=Q7A236_PROVU Length = 294 Score = 228 bits (582), Expect = 1e-58, Method: Composition-based stats. Identities = 78/304 (25%), Positives = 131/304 (43%), Gaps = 27/304 (8%) Query: 9 RLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQS 68 L TF Q+ +L + L ++V +P V + DEH P++ + G++A Sbjct: 2 DLKKTFEQLTDDLLALKMLISGSSPLFSQVSDIPPVLRGDEHLPISYVAPDHLYGHEAIQ 61 Query: 69 LALRHFRHLFIQQQSENRSSKAAVRLPGVLCY-QVDNLSQAALVSHIQHINKLKTTFE-H 126 A+ + L I+ + S K+A R GVL + DN LV + IN LK + E H Sbjct: 62 KAVDIWSDLHIKH---DFSQKSARRASGVLWFPSEDNAFTVELVRLLSQINALKKSIETH 118 Query: 127 IVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHD--PATLRFGWANKHIIKNLHRD 184 I+T +ARFE +H G++TL+ YR + D + +RF W K + + Sbjct: 119 IITTYQT--RSARFEALHNQCAGVLTLHLYRQIRWWKDEHISAVRFSWQEKESLLIPDKA 176 Query: 185 EVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWY 244 E+L ++ K + + + L + I ++P+ + +KVQP A + + Sbjct: 177 ELLVRMSKEGREDG--------KKEVPLALLMKQIVSVPEERLRIRR-RLKVQPSANISF 227 Query: 245 KGDQ----KQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLII 300 + +Q K P P I + N P+V L YDA+ R + + I+ Sbjct: 228 RSEQHPTGKLTMVTAPMPFIIIQNER-----PEVKMLKIYDANERISRKRRNDKVHTEIL 282 Query: 301 PRLH 304 H Sbjct: 283 GTFH 286 >UniRef50_A0L2U6 Site-binding protein, DNA replication region n=1 Tax=Shewanella sp. ANA-3 RepID=A0L2U6_SHESA Length = 290 Score = 220 bits (560), Expect = 5e-56, Method: Composition-based stats. Identities = 72/286 (25%), Positives = 125/286 (43%), Gaps = 22/286 (7%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDE--HNPLNRIEVKQHLGNDAQ 67 L+ + ++ L L+ + + A V +P V K E P I V++ LG A Sbjct: 6 LSDNYEVIQSTLLQLNHLLDSNTPVRASVTPVPPVMKSAEKVREPETVISVRETLGLAAV 65 Query: 68 SLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHI 127 + A + L I + S ++A R PGVL Y L ++ I IN KT E Sbjct: 66 TKAKLAYGDLHIH---PDYSQRSARRTPGVLWYSTSPLVTNKVMDVIARINLAKTAIEKE 122 Query: 128 VTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDP-ATLRFGWANKHIIKNLHRDEV 186 +T + A RFE + PG++ L+ YR + ++P + RF W K ++ + +D++ Sbjct: 123 ITTKYST-RADRFEKLREVCPGVMALHLYRQIRCFNEPMTSARFSWLCKDVVSKVDKDKL 181 Query: 187 LAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKG 246 L +L +K +E +L Q+I + P+ A ++ +R ++ QP+A + G Sbjct: 182 LERLNADIKRL-------GDECPSQLLLLKQNILSTPE-AMIRARRDIQPQPVANLMING 233 Query: 247 DQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQ 292 K V PLI L + ++ L +DA + + Sbjct: 234 KVKTV--TATMPLIVLQSE-----PLEIKPLTTFDASVKRGTRADK 272 >UniRef50_A3JJE4 DNA replication terminus site-binding protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3JJE4_9ALTE Length = 308 Score = 220 bits (559), Expect = 6e-56, Method: Composition-based stats. Identities = 78/297 (26%), Positives = 128/297 (43%), Gaps = 20/297 (6%) Query: 5 DLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGN 64 D + ++ +E+ A L Q + R++ +P +E+E P+ I G Sbjct: 9 DTLQKIVLAVECLERLCADAKLLLMQANPVQCRIYQIPRTVRENESQPVTDIHPTDLSGT 68 Query: 65 DAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTF 124 +A + AL + Q S+K R+PG L N+ ++ ++ + IN+ KT Sbjct: 69 EAFNAALHALTDWYGHPQ---YSTKVVNRVPGALVL--ANVDESQVLDRMAEINRSKTAI 123 Query: 125 EHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATL---RFGWANKHIIKNL 181 E ++ S RFE +H H P LI R L VL L F W K IK + Sbjct: 124 ESLI--PSLGNRDDRFELLHGHFPWLILAQLTRRLQVLPCSPPLQSCTFTWGIKTEIKKM 181 Query: 182 HRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIAR 241 D+V +LE + PRS W K++RE I +LP +A+L+ +R ++V+P+A Sbjct: 182 TADQVCERLELFRQRPRSTI--DDVPWDIKIDREIMSIRSLPASAQLRSRRVLRVRPLAN 239 Query: 242 VWYKGDQK----QVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQ 294 + Y + TP++ L N +G L NYD R + + + Sbjct: 240 LRYHANDGEPAETYMREAHTPILIL----NPIRPIKLGVLKNYDVQTRSGRQRLKDR 292 >UniRef50_A0Y2M9 DNA replication terminus site-binding protein n=3 Tax=Alteromonadales RepID=A0Y2M9_9GAMM Length = 291 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 82/299 (27%), Positives = 136/299 (45%), Gaps = 18/299 (6%) Query: 8 DRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQ 67 ++ + F M + ++ L+Q + A + LPEV +E+N I V + G++A Sbjct: 5 IKIRSQFDLMSELTSLLIDELKQCEYSKAEYYKLPEVLTSEENNVPQSIPVSKLTGDNAL 64 Query: 68 SLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHI 127 L F ++ + SS+ R PG+L + N ++ AL I +NK K F+ Sbjct: 65 RAILNSFNDMYTKS---GLSSRVLKRHPGLLV--IKNANKQALNDRINQVNKAKAAFKEC 119 Query: 128 VTVESELPTAARFEWVHRHLPGLITLNAYRTLTV-LHDPATLRFGWANKHIIKNLHRDEV 186 + ARFE VH +P LITL AYR + P ++RF W +KH K L + Sbjct: 120 ILSID--NNDARFEAVHNAVPNLITLAAYRKIHSESESPFSVRFTWMHKHATKTLTKKMA 177 Query: 187 LAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKG 246 L L KS + +++WQ + +E IA+L + KL+I+RP +V P + Y Sbjct: 178 LEMLSKS-AGYTNPRMIDQQKWQSLVAQEQMRIASLGEKEKLRIRRPTRVSPQVNIRYTA 236 Query: 247 DQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHL 305 Q + + P I + N +G L +Y+ + R + ++ RL+L Sbjct: 237 -QNRYHVSAALPFILI----NPEPDVKIGTLPDYEKPDSHPRKRD----YDFLVDRLYL 286 >UniRef50_A6FFP0 Putative DNA replication terminus site-binding protein (Ter bindingprotein) n=1 Tax=Moritella sp. PE36 RepID=A6FFP0_9GAMM Length = 326 Score = 215 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 21/288 (7%) Query: 9 RLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQS 68 + F Q+ +L L + + A V +P V K E +N+I + A Sbjct: 41 DIKNLFEQLTTKLQQLEKLLATTQPVQALVSRIPAVLKGQEQAVINQIMPELVTDMLAMK 100 Query: 69 LALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIV 128 LA F+ + I+ S K+A R G++ +N + A +V+ I+ IN +K EH V Sbjct: 101 LAAEAFKDIHIKH---PFSQKSARRYVGIIHLHPENQNSAKIVTSIEDINTIKGAIEHAV 157 Query: 129 TVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDP--ATLRFGWANKHIIKNLHRDEV 186 E+E ARF +H + PG++T++ YR + L + ++RF W K + + ++ Sbjct: 158 VSENESRQ-ARFSAIHDNCPGVMTVHLYRKIHCLENEYVKSVRFSWQRKDSLHQPDKIKL 216 Query: 187 LAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKG 246 L ++ + + Q L + +Q IA + +L+++RPVKVQP A + Sbjct: 217 LGEITAEKERA-------TPDNQLALTQLHQQIATTAE-HQLRVRRPVKVQPAANIVKVT 268 Query: 247 DQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQ 294 K V P P+I + + E+ ++ A +++ + + + Sbjct: 269 GLKTV--TAPLPIIVVQKE-----PLETHEVADFIASHMRKQRSDKRK 309 >UniRef50_C1MF14 DNA replication terminus site-binding protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MF14_9ENTR Length = 296 Score = 210 bits (533), Expect = 6e-53, Method: Composition-based stats. Identities = 76/299 (25%), Positives = 131/299 (43%), Gaps = 32/299 (10%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSL 69 ++TTF+ +E E+ L L A V LP V +E + I + G+DA Sbjct: 3 ISTTFQTLESEITQLRGVLGSRLPLKASVCVLPAVADGEEDMAIEHIMPELKQGHDAVHA 62 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALV-SHIQHINKLKTTFE-HI 127 A + L I+ S K+A R GVL Y + + LV + IN+ K + + HI Sbjct: 63 ACAAYADLHIRD---GYSQKSARRTTGVLWYDNTDAEFSQLVTRLVTSINQHKESIQRHI 119 Query: 128 VT--VESELPTAARFEWVHRHLPGLITLNAYRTLTVLH--DPATLRFGWANKHIIKNLHR 183 + P RF +H PG++TL+ YR L + + + FGW K + +++ Sbjct: 120 IENYGGDRRPEYMRFNALHSACPGVMTLHLYRQLRMFDNANVNLVSFGWRQKTLFSRVNK 179 Query: 184 DEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVW 243 E+L ++ K ++ E+ +L + IA +P+ KL+++RPVKV P A + Sbjct: 180 IELLQKMGKDIEE--------DEDKSVRLNSLIKAIARVPEE-KLRLRRPVKVHPAANIA 230 Query: 244 YKGDQK-----QVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLR 297 + ++ A P I + + + L + A+ V KP++ L+ Sbjct: 231 MADPEHPDQILRLSAASSMPFIIIQDEH-----VKIRPLPEFVANEV----KPRSNRLK 280 >UniRef50_A9CZ55 DNA replication terminus site-binding protein n=1 Tax=Shewanella benthica KT99 RepID=A9CZ55_9GAMM Length = 314 Score = 189 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 61/275 (22%), Positives = 123/275 (44%), Gaps = 28/275 (10%) Query: 15 RQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHF 74 RQ+EQ + L +H V FS+P +K +E +I+V+ +A F Sbjct: 17 RQLEQAVTKMLIVLGKHSPEVIG-FSIPSFEKREEDEQPEQIQVQ--------PVADFSF 67 Query: 75 RHLFIQQ--QSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVES 132 H Q +++ R PGV+ + ++ I IN+LK F V + Sbjct: 68 THTAFSQWLAPVGANTRLVKRYPGVVILS---SGEQQIIPLISEINRLKDEFAKAVRLGF 124 Query: 133 ELPTAARFEWVHRHLPGLITLNAYRTLT-VLHDPATLRFGWANKHIIKNLHRDEVLAQLE 191 + +A E +H+ +PG++ A R + ++ +++ F WA++ ++K + +++ LA ++ Sbjct: 125 KNRQSAH-ENLHKIIPGILLQQATRKIHHLVQTVSSVNFYWAHRPMVKEITKEQALADID 183 Query: 192 KSLKSPR-SVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQ 250 ++L+S R + + E +++ + E I+ +P +A++ +R +VQP +W K + Sbjct: 184 RALESKRYDLTMLNKTEIEQRTQHEKSLISRIPADARIIERRIARVQPCYDIWIKASGSK 243 Query: 251 V-----QHACPTPLIALINRDNGAGVPDVGELLNY 280 P+I V L +Y Sbjct: 244 TATKLGSKNASLPVIIFGK------VGRYNGLSDY 272 >UniRef50_B5EVU5 DNA replication terminus site-binding protein (Ter protein) n=1 Tax=Vibrio fischeri MJ11 RepID=B5EVU5_VIBFM Length = 326 Score = 178 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 58/317 (18%), Positives = 124/317 (39%), Gaps = 24/317 (7%) Query: 5 DLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDE-----HNPLNRIEVK 59 +L D L ++E E+ + + Q KL+ A V +LP + + H+ + I Sbjct: 18 ELHDYLLAVVDKIEIEIQNLSHLIRQGKLIHAEVAALPIAEITQDGIDTVHHEIETIYPI 77 Query: 60 QHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINK 119 + G DA LR+ ++ + + S K A R G++ ++ + + + + IN+ Sbjct: 78 RLYGKDAVEAYLRNIQYQYKHS---DLSPKGARRCVGIIHVSGNSEYEENVKNKVFLINQ 134 Query: 120 LKTTFEHIV-TVESELPTAARFEWVHRHLPGLITLNAYRTLTVL-HDPATLRFGWANKHI 177 LK ++ + S +F + + G++ R L + + A + F W NK Sbjct: 135 LKAEIKNYLSRCCSTARQRQKFYQLSQV--GVLPKTVTRKLHLANPNVAYVSFSWLNKGY 192 Query: 178 IK-NLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKV 236 ++ ++ L + K+ ++A + +L + + + + + RP K+ Sbjct: 193 LQEKINHKRALDIVHKA---NANIAEKNEDISVHELNAKDELKLSSFETRDIIWIRPSKL 249 Query: 237 QPIARVWYKGDQKQVQ---HACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYK-PQ 292 P + Y + K Q +PL+ + N + L ++ + + + + Sbjct: 250 NPRFKCSYFINDKTYQDEPIRATSPLLIVQNS----PLKRYNHLDDFRGVHTLAKVEGLK 305 Query: 293 AQPLRLIIPRLHLYVAD 309 II L Y D Sbjct: 306 RVKRTPIIEFLGFYSQD 322 >UniRef50_C4XDE4 Putative uncharacterized protein n=3 Tax=Klebsiella pneumoniae RepID=C4XDE4_KLEPN Length = 319 Score = 171 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 117/312 (37%), Gaps = 39/312 (12%) Query: 19 QELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLF 78 ++L + L + + + +LPE + +E NP I V + + + +R Sbjct: 14 RKLGELHSLLRHSDIGSSYLATLPEPRSVEELNPPQEINVTHSVPD--VDTLVDIYRQQR 71 Query: 79 ---IQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVESELP 135 + + E+ S+K + PG + V + ++S + IN+L+ F V + Sbjct: 72 VDKVHVRDEHYSTKITRKYPG---FVVVRNNHDQVMSLVGEINRLRDKFAEAVKAITHY- 127 Query: 136 TAARFEWVHRHLPGLITLNAYRTLTVL-HDPATLRFGWANKHIIKNLHR-DEVLAQLEKS 193 +R E +H+ P L+TL R + ++ +L F W +I R + V+ +L + Sbjct: 128 QDSRSEILHQVYPWLVTLQVSRNIRIVTEQIRSLGFTWQI-PVIHKFTRLETVIDRLRRE 186 Query: 194 LKSPRSVAPWTREEWQRKLEREYQDIAALP--------QNAKLKIKRPVKVQ--PIARVW 243 + + T+++ +R + ++I L + + R ++ P V Sbjct: 187 ITELQPDISLTKQDVERLKQERTEEIMMLSLLNDEVSHDDESSRKFRLIRESNFPAVNVN 246 Query: 244 YK----------GDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQA 293 + ++ P PLI L NY Q R Sbjct: 247 IRYTSPEDPDDVHGPYKLNFRAPLPLILFS------EPGRFNPLKNYVKGERQKRGDV-N 299 Query: 294 QPLRLIIPRLHL 305 + R ++PR+ L Sbjct: 300 EKYRSVLPRIGL 311 >UniRef50_Q19NN4 Putative DNA replication termination protein n=8 Tax=Enterobacteriaceae RepID=Q19NN4_ECOK1 Length = 326 Score = 171 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 48/318 (15%), Positives = 111/318 (34%), Gaps = 34/318 (10%) Query: 15 RQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHN-PLNRIEVKQHLGNDAQSLALRH 73 Q+ + + L L+A + ++ V + +E + I V + + ++ Sbjct: 17 DQILERIDSLKCFLSNTPPLMANLMTVSTVSRTEERLKQVKPIRVS-VKDDASVEEIIQA 75 Query: 74 FRHLFIQQ--QSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVE 131 + + + S+K + PG++ + L S I IN+ K F + Sbjct: 76 LTDICVDDIESLSHDSTKVTTKYPGLI---IVPERADLLESLITSINEAKNDFAAAMRRI 132 Query: 132 SELPTAARFEWVHRHLPGLITLNAYRTLTVLHDP-ATLRFGWANKHIIKNLHRDEVLAQL 190 RF+ VH+ LPGL+ +++ R + + + F W + +++++ L Sbjct: 133 D-NKKNVRFDKVHKKLPGLVAMHSTRNVLFIKSQLKKVTFSWRLNRNQEVKTAEQLVSLL 191 Query: 191 EKSLKSPRSVAPWTREEWQRKLEREYQDIAALP---QNAKLKIKRPVKVQPIARVWYKGD 247 E+ S T +++ + P + + PIA ++ Sbjct: 192 ERRRASEVKNVATTNLNVVSNIDKALHRLEFHPLKQGESYRLCRTNSFPVPIAHIFAFRP 251 Query: 248 QKQVQ------------HACPTPLIALINRDNGAGVPDVGELLNYDADNVQH--RYKPQA 293 + Q + P+ A N +P + L ++ +N Q + + Sbjct: 252 EGQERNGNKYAETDYSVVKASLPIFAAGN------IPQLKTLSDWAPENSQGPSNQRKLS 305 Query: 294 QPLRLIIP--RLHLYVAD 309 ++P L +++ Sbjct: 306 LKYTELVPGAELGIFIVS 323 >UniRef50_A0L360 Site-binding protein, DNA replication region n=1 Tax=Shewanella sp. ANA-3 RepID=A0L360_SHESA Length = 290 Score = 168 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 51/306 (16%), Positives = 109/306 (35%), Gaps = 38/306 (12%) Query: 12 TTFRQMEQELAIFAAHLEQHKLLVAR----VFSLPEVKKEDEHNPLNRIEVKQHLGNDAQ 67 +F + +L + L H A + + ++ +V+ A+ Sbjct: 9 NSFDVLYNKLTLELIELASHLPDAASNQSFFYKITPSP-----QTFDKFKVELFSDIKAR 63 Query: 68 SLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHI 127 + + + S R+S PGV+ + + + I+ IN K + + Sbjct: 64 GWIASSLTQMTLSEDSIGRTSI----TPGVIIFP--HSEYNHINQLIEKINNTKDNIQAL 117 Query: 128 VTVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDP--ATLRFGWANKHIIKNLHRDE 185 ++ A + ++ R + VL +T+ W + ++ L + Sbjct: 118 LSTHDLHKLRATLARQNTLCSLVM---LTRKIHVLKCEEKSTISVSWYMRSGMRVLKEKD 174 Query: 186 VLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYK 245 +++K++++ + E+ ++ + + +IKR + I +W Sbjct: 175 FSTRIQKAVQNN-ILEFSKGNEYLEIFQKNQK-------SHSFRIKRNIIPTTIYNIWKA 226 Query: 246 GDQK-QVQHACPTPLIALINRDNGAGVPDVGEL-LNYDADNVQHRYKPQAQP-LRLIIPR 302 G K ++Q+ TPL + D V L NY R A P L+IP Sbjct: 227 GSSKEKLQYNGQTPLFVFSDYD-----IKVKHLESNYGTKTRSKRN--DATPDTDLLIPE 279 Query: 303 LHLYVA 308 LH+Y++ Sbjct: 280 LHIYMS 285 >UniRef50_Q3JAL9 Putative uncharacterized protein n=2 Tax=Nitrosococcus oceani RepID=Q3JAL9_NITOC Length = 295 Score = 157 bits (396), Expect = 5e-37, Method: Composition-based stats. Identities = 58/310 (18%), Positives = 108/310 (34%), Gaps = 28/310 (9%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSL 69 +N Q+ LA HLE A++ L + KE+E PL K A+ Sbjct: 1 MNNVNSQLRATLATAMHHLE------AQLGVLDRLLKEEESYPLWVWHEKDPS--KARLQ 52 Query: 70 ALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVD-----NLSQAALVSHIQHINKLKTTF 124 + + + + S++ L GV C ++ N ++A L ++ I+ +K Sbjct: 53 VRQIVTAIDYRDGQDPVSTRICPALVGVSCATLEAIRHANQAKADLQKALKSIDGIKIEE 112 Query: 125 EHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLTVL-HDPATLRFGWANKHIIKNLHR 183 ++ T L + L A R +L P ++ F W+ I+++ Sbjct: 113 QNQETGTFLLRPLIKIALASLGHARLHRRQATRKFVILEQTPESVSFIWSRLPKIESIDI 172 Query: 184 DEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVW 243 +E +LE L+ + + + + L N +L I P + P A + Sbjct: 173 EEARRRLEARLEKVQGNPVLIKAD--------LSRLDRLVSNERLAIVNPPHIHPRANIA 224 Query: 244 YKGDQKQV---QHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYK--PQAQPLRL 298 + ++K Q P+ R + + R + P L Sbjct: 225 WTIEKKTTRRGQKRAVLPIFYPSTRYDRLPRLRPLPEEPPLPGSRLRRNDATIETTPFLL 284 Query: 299 IIPRLHLYVA 308 I R H Y++ Sbjct: 285 TI-RAHRYMS 293 >UniRef50_C9P141 Putative uncharacterized protein n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P141_VIBME Length = 291 Score = 156 bits (394), Expect = 9e-37, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 111/315 (35%), Gaps = 40/315 (12%) Query: 5 DLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLG- 63 DL + +T Q++ + L KL+ V +P+ ++ E P I K+ Sbjct: 4 DLDIDIESTVMQLKDQEQELYNFLIALKLIQKHVQDVPQFQRG-EALPPT-IHAKRLDSM 61 Query: 64 --NDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLK 121 ++A +++ + R G++ + + + IN+L+ Sbjct: 62 PLHEALRVSIEPQKVFEYPHNIP-------KRFAGLIQLEANEKEYEQAQALTHQINELR 114 Query: 122 TTFEHIV-TVESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPAT-LRFGW-ANKHII 178 T + + E++ AR R P + R + +L D +T + F W + + Sbjct: 115 ATIVNYIAEKETDYRKRARLS--QRLFPDTLYQTVNRKIPLLPDTSTRIDFSWCEQQKSV 172 Query: 179 KNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQP 238 K L ++ ++ L++ WQ E L +A V+ P Sbjct: 173 KKLSTEQAVSMLQRF--------DANTPPWQAAKNME-----RLMNSASAYKVTNVRTHP 219 Query: 239 IARV-WYKGDQKQV---QHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQ 294 A V +Y + +V +P+IALI V + + D ++ + Sbjct: 220 QALVKYYNEETGEVFVETRKVHSPMIALIQSRQPMEVSPLPDFQENDKKHLLLKG----- 274 Query: 295 PLRLIIPRLHLYVAD 309 + I+ LY D Sbjct: 275 -YKPIVEGTCLYCKD 288 >UniRef50_B7XGI4 Replication terminus site binding protein n=2 Tax=Pseudomonas RepID=B7XGI4_PSEPU Length = 323 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 54/273 (19%), Positives = 98/273 (35%), Gaps = 33/273 (12%) Query: 49 EHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQA 108 E +RI V+ G DA A+ R ++ ++ +RLPG Sbjct: 40 EQRTPSRINVQVLTGTDAIKAAVEALREF---ERDLGQAPGTVLRLPGYFILSGS----- 91 Query: 109 ALVSHIQHINKLKTTFEHIVTVESELPTAA---RFEWVHRHLPGLITL-NAYRTLTVLHD 164 ++ + +N+ K+ + E A R + + L +L R + V Sbjct: 92 -ILDEGRAVNRCKSELVDAIEAERVFRNVAVSRRSHIMRQALGKNFSLNQLKRAIQVFDA 150 Query: 165 -PATLRFGWANKHIIK-NLH----RDEVLAQL-EKSLKSPRSVAPWTREEWQRKLEREYQ 217 P + F WA K + R+ +LA+ EKS+ + +W + + Sbjct: 151 APRQITFTWAGHTSGKERVTVGHVREVLLAEAHEKSMATGE--PVVNSPQW-----IDLR 203 Query: 218 DIAALPQNAKLKIKRPVKVQPIARVWYKGDQK-QVQHACPTPLIALINRDNGAGVPDVGE 276 IA + + L + +P+ P A +W+ + P L D VG Sbjct: 204 SIANMAETDMLDVPKPIAPHPRAMLWFSERSRYDAMLHANLPFFVL---DGQPAARIVG- 259 Query: 277 LLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD 309 L N+D D+ + +P + +P +VA Sbjct: 260 LKNFDRDSRSAK-RPDVKQRLPALPGGRFFVAS 291 >UniRef50_Q1N4Y0 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N4Y0_9GAMM Length = 290 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 45/268 (16%), Positives = 85/268 (31%), Gaps = 39/268 (14%) Query: 57 EVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQH 116 E ++ LG A F+ + + R +++ C+ + + L + + Sbjct: 37 ETEKSLGWHPLDKAKHFFQDFWYLDGQDGRETRS--------CFGMITIDDEQL-ALVTQ 87 Query: 117 INKLKTTFEHIVTVESELPTAA----------RFEWVHRHLP--GLITLNA---YRTLTV 161 IN LK F+ + A R + L GL L+ +RTL V Sbjct: 88 INNLKLDFKKAIDQLKRSQRQAWTDVRKDLGQRHPLLREQLHYSGLTRLHLKQTWRTLPV 147 Query: 162 LH-DPATLRFGW-ANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDI 219 + + F W + I+ + + L K + R ++ + + Sbjct: 148 IDRSITRIGFNWYQSGRSIQKITVQQAYDALSK------------MDTGSRHIQTQLNQL 195 Query: 220 AALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLN 279 LP L + + A ++Y+ + PL+ N E Sbjct: 196 GRLPSTTPLAKVQTLAPVMRANIFYETAPLRQAMNVSLPLLIHGNTGLPPHNIPDMEPPA 255 Query: 280 YDADNVQHRYKPQAQPLRLIIPRLHLYV 307 + +K + Q I R+H YV Sbjct: 256 ERQRARRSDFKIEEQAFLPSI-RVHRYV 282 >UniRef50_UPI000190F113 DNA replication terminus site-binding protein n=4 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190F113 Length = 134 Score = 143 bits (360), Expect = 8e-33, Method: Composition-based stats. Identities = 95/134 (70%), Positives = 113/134 (84%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 M+RYDLV+RLN TFRQ+EQ LA + +L+QH LL+A VFSLP+V KE EH PL+ IEV Q Sbjct: 1 MSRYDLVERLNGTFRQIEQHLAALSDNLQQHSLLIASVFSLPQVTKEAEHAPLDTIEVTQ 60 Query: 61 HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKL 120 HLG +A++LALRH+RHLFIQQQSENRSSKAAVRLPGVLCYQVDN +Q L + +Q IN+L Sbjct: 61 HLGKEAEALALRHYRHLFIQQQSENRSSKAAVRLPGVLCYQVDNATQLDLENQVQRINQL 120 Query: 121 KTTFEHIVTVESEL 134 KTTFE +VTVES L Sbjct: 121 KTTFEQMVTVESGL 134 >UniRef50_C0B3V4 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B3V4_9ENTR Length = 156 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 76/135 (56%), Positives = 103/135 (76%) Query: 173 ANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKR 232 + ++KNL R+EVLAQLEKS ++ R+V P+T E+W +L++E ++ LP+NAKLKIKR Sbjct: 20 RIRILLKNLTRNEVLAQLEKSREANRAVPPYTSEQWAERLDKEIITLSQLPENAKLKIKR 79 Query: 233 PVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQ 292 PVKVQPIARVWY QKQVQ+ACP PL+A P +GEL +YDADN+Q R++P+ Sbjct: 80 PVKVQPIARVWYSELQKQVQYACPLPLLAFYIDKENDFKPIIGELPDYDADNIQIRHRPK 139 Query: 293 AQPLRLIIPRLHLYV 307 A+ L+LIIPR+HLY+ Sbjct: 140 AKKLQLIIPRMHLYL 154 >UniRef50_C0B3V3 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B3V3_9ENTR Length = 116 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 66/112 (58%) Query: 1 MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQ 60 + +YDL+++ N F+ +E E+ + L + LL + VF LP+V KE+EH+ + + V Sbjct: 3 VNKYDLIEQFNRCFKLLETEIEALSTSLRKLTLLPSAVFELPDVSKEEEHDEVAYVTVSP 62 Query: 61 HLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVS 112 DA +L L+ +LFI + + SSK A+RLPGVLC+ +N + ++ Sbjct: 63 SYNEDALNLTLKLIANLFIYDNAPHISSKRAIRLPGVLCFSTNNQTFKSVKK 114 >UniRef50_A4BHM1 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BHM1_9GAMM Length = 291 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 85/281 (30%), Gaps = 50/281 (17%) Query: 47 EDEHNPLN--RIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDN 104 E+++ P+ + G + L+ + + R ++ PG++ + Sbjct: 24 ENDNRPIWLADWHTEPAFGLEPV------LTDLWYHEDQDGRETRL---YPGIVSLNHEQ 74 Query: 105 LSQAALVSHIQHINKLKTTFEHIVT-------------VESELPTAARFE--WVHRHLPG 149 ++ A IN+LK F VT R L Sbjct: 75 VTFAN------EINRLKDEFRAEVTRIKEKDSHQWRDIQGKLARRYQRVNEQLQREGLNR 128 Query: 150 LITLNAYRTLTVL-HDPATLRFGWA-NKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREE 207 L +R + ++ P + F W + IK + R+E L K Sbjct: 129 LHLKQLFRHIPLIVQRPEKVGFSWYTSGRSIKKITRNEAYDLLCKLNTDAT--------- 179 Query: 208 WQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDN 267 ++ + + +A +P+ L + A + + D+K+ P++ Sbjct: 180 ---HIKIQLERLAGIPEQEPLARVQTQAPVLRANMVFP-DKKRRSMNVSLPIMFPGEGRA 235 Query: 268 --GAGVPDVGELLNYDADNVQHRYKPQAQPLRLIIPRLHLY 306 + V+ + +P + R+H Y Sbjct: 236 ALPDFNVPLPTPPAERTRLVRSDNRIDDEPFLPSV-RVHRY 275 >UniRef50_Q2BNN0 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BNN0_9GAMM Length = 278 Score = 82.9 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 51/317 (16%), Positives = 97/317 (30%), Gaps = 61/317 (19%) Query: 7 VDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDA 66 L + Q+EQ L+ L +++ + I + Sbjct: 4 DIALINAYEQLEQALSELRLLLNDQRVIFQLFTP----------DTSETINLPHL----- 48 Query: 67 QSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEH 126 ++ Q+ + R + L GV + + +Q IN+ K F+ Sbjct: 49 -------LTQIWYTQEGDGRRTLNQYGLVGV---------PPSFIPLLQQINQKKLFFKQ 92 Query: 127 IVTVESELPTAARFEWVHRHL--------PGLITLNA---YRTLTVLH-DPATLRFGWA- 173 + E R GL L+ YRTL +L P + F W Sbjct: 93 AIQDYREQNKEPGPFLFKRACELNLGLSKSGLARLHLKQCYRTLPILESCPDKVTFSWYT 152 Query: 174 NKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRP 233 + K L + L +L K + Q ++ + + + L ++ L + Sbjct: 153 SGKSQKKLSVKQALERLMK------------MDTGQIHIQMQIEALNKLSESEPLVQIQN 200 Query: 234 VKVQPIARVWYKGDQK--QVQHACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYK- 290 A + ++ + CP PL ++ D + L + + Q R Sbjct: 201 QVPVIRANIAWRSGTDWVRKARNCPLPLFFPMSEDKPFPEYNTPALTPPEKRSRQFRADS 260 Query: 291 -PQAQPLRLIIPRLHLY 306 + P + R+H Y Sbjct: 261 VIETDPYLPSL-RVHRY 276 >UniRef50_Q1QX76 Putative uncharacterized protein n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QX76_CHRSD Length = 286 Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 47/321 (14%), Positives = 95/321 (29%), Gaps = 60/321 (18%) Query: 10 LNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQS- 68 + +R + Q F +E + L+ E P + LG Sbjct: 1 MERQYRLLAQLEHQFDHVIETCEALIGH----------AERRPPDGW----VLGGAPFEA 46 Query: 69 -LALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHI 127 + Q + R+++ + L + +AL++H+ +N+ K TF Sbjct: 47 RWLRHALLDFWYQDGQDGRATRNYIGLV---------AADSALLAHVDEVNQAKQTFAAT 97 Query: 128 VTVESELPTAA----------RFEWVHRHLPG-----LITLNAYRTLTVLHDP-ATLRFG 171 + + + R +H HL G L +R L V P A +R Sbjct: 98 LAEIRQHFPSLVAEAKAVLPFRHPTLHDHLRGKGLARLHLKQCWRHLPVADAPLAQVRLA 157 Query: 172 WA-NKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKI 230 W + IK L + +L + + + + +A +P + L Sbjct: 158 WYTSGRSIKRLSVRDAERRL------------LEMDSDSPHIRIQLRALAGIPDSEPLAQ 205 Query: 231 KRPVKVQPIARVWYKG----DQKQVQHACPTPLIALINR-DNGAGVPDVGELLNYDADNV 285 + A ++++ +++ P PL Sbjct: 206 VQTQTPVMRANLFFREALDDGRQRRAMNVPLPLFIPSPEGRLPPHNVPADAPPPTRTRAK 265 Query: 286 QHRYKPQAQPLRLIIPRLHLY 306 + K + P + R + Y Sbjct: 266 RADTKLEDTPFLPSL-RAYRY 285 >UniRef50_A4V827 Putative uncharacterized protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V827_PSEFS Length = 326 Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 64/307 (20%), Positives = 122/307 (39%), Gaps = 34/307 (11%) Query: 13 TFRQMEQELAIFAAHL--EQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLA 70 +Q+E EL + L +H+L V +F L E + E + + I V++ G+DA A Sbjct: 14 VVKQLEAELKVLVRMLNDSRHRLRVDAIFEL-EFRHEPKVDEAAPIPVRRLEGSDAVDAA 72 Query: 71 LRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTV 130 + + +++ ++K +R PGV+ ++ I N+L++ E ++ Sbjct: 73 IDVLTCITMKETQ---NAKETLRSPGVVGLP------REVIDKIIETNELRSKLEMLIGK 123 Query: 131 ESELPTAARFEWVHRHLPGLITLNAYRTLTVLHDPATLRFGW------ANKHIIKNLHR- 183 + P R W R + A R +L +P + F W ++H+ +L + Sbjct: 124 IKK-PKDRRMVW--RKFEAISPKQAMRCTPILKNPQNINFFWTDTGTSGSRHVASDLVKE 180 Query: 184 -DEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARV 242 +E+ +L + + EE D+ + ++ I RPVK ARV Sbjct: 181 WEELFFELHDRRPTMADAPKGSVEEGF----MTAIDLLRKLGHEQVAIWRPVKPHIRARV 236 Query: 243 WYKGDQKQVQHACPTPLIALINRDNGAGVPDVGELLNYD---ADNVQHRYKPQAQPLRLI 299 + + P + I+ P + LL+YD A +P + Sbjct: 237 REGEAPVRPIIS-SVPFVYDIDEC--KFAPTIKPLLSYDVVTARRKSAGREPLLEKY-PY 292 Query: 300 IPRLHLY 306 I +++LY Sbjct: 293 IKKMNLY 299 >UniRef50_A8PMI4 Putative uncharacterized protein n=1 Tax=Rickettsiella grylli RepID=A8PMI4_9COXI Length = 279 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 29/227 (12%), Positives = 71/227 (31%), Gaps = 30/227 (13%) Query: 84 ENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVE-----SELPTAA 138 S + + PGV+ + + I +N+ K F+ ++ ++ Sbjct: 63 PELSPQETFKCPGVV------AATEETLMLINQVNQSKQAFKQLLKACHQALGQDVTKFV 116 Query: 139 RFEWVHRHLPGLITLNAYRTLTVLH-DPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSP 197 R H PG+ +R + ++ P + + K+L + L+K+ K Sbjct: 117 RTTLAHAGYPGVKLKQVFRHIMFINYHPRRIAWTKGKHTTSKHLSKKASEKLLDKAGKG- 175 Query: 198 RSVAPWTREEWQRKLEREYQDIAALPQNAKLKIKRPVKVQPIARVWYKGDQKQ----VQH 253 ++ + ++ LPQ KL R +K + + + Sbjct: 176 ------------LHIDIQKAKLSHLPQQTKLIKHRAIKPGWVVNIGAFKKEDNCSVYEDI 223 Query: 254 ACPTPLIALINRDNGAGVPDVGELLNYDADNVQHRYKPQAQPLRLII 300 P L ++ + + + ++ + ++ I Sbjct: 224 RTALPFFYLHDQQLPNPIVCFSK-SASETRKMRVDKRIESVAFLPSI 269 >UniRef50_A3JI28 Putative uncharacterized protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3JI28_9ALTE Length = 378 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 66/210 (31%), Gaps = 38/210 (18%) Query: 18 EQELAIFAAHLEQHKLLVARVFSLPEVKKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHL 77 EQ L ++ + A V + +P K + ++A+ A+ + Sbjct: 68 EQILGNLSSVFSALR-EQAHVARARLLSDGQNGHPATMESPKCEIADEARLHAIEALLNW 126 Query: 78 FIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHINKLKTTFEHIVTVE------ 131 + ++ + K V G + + + +N+LK F ++ Sbjct: 127 YYRKDQD---QKETVAYIGAVSASP------HTLKALHELNRLKHEFSDLLVTLRDALDP 177 Query: 132 ---------------------SELPTAARFEWVHRHLPGLITLNAYRTLTVLHD-PATLR 169 + AA H L RT+ ++ + P ++R Sbjct: 178 LSNTRGDMHDILGMLSENAPVNLSRKAAGSLVRHLLHSKLNIRQLVRTIPIVDELPYSIR 237 Query: 170 FGWANKHIIKNLHRDEVLAQLEKSLKSPRS 199 + W + + R ++L LE+ P S Sbjct: 238 WRWIDSPSSVRIDRVKLLDMLERKYDHPES 267 >UniRef50_A1SVY6 Predicted primosomal replication protein N'' n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SVY6_PSYIN Length = 241 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 22/229 (9%) Query: 2 ARYDLVDRLNTTFRQMEQELAIFAAHL---EQHKLLVARVFSLPEVKKEDEHNPLNRIEV 58 L + L T ++ Q LA F+A + + K + VFSL + + + I V Sbjct: 10 NSDQLKENLLKTVAEVRQALADFSAVILLQDNDKQRQSVVFSL----IDRADDQIEFI-V 64 Query: 59 KQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQVDNLSQAALVSHIQHIN 118 A L+ + +Q+ S + +L G + L L HI IN Sbjct: 65 DSFFAQSAIQETLQFIKSFELQKG----SEQDTKKLAGFIQ---TALPVEVLDLHITRIN 117 Query: 119 KLKTTFEHIVTV--ESELPTAA--RFEWVHRHL--PGLITLNAYRTL-TVLHDPATLRFG 171 K + I+T ++++ A RF +VH +T YR L + ++ FG Sbjct: 118 SAKDRCKKIITSIKDNDVRKQADKRFYFVHSVCGFSHFVTNELYRHLVHITEPVDSIYFG 177 Query: 172 WANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQDIA 220 + + + A L +++ L + + +A Sbjct: 178 LEKHNKQSTVFFPKAKATLRNKSDQDKAIVRKKHNSLPIFLAKNSELLA 226 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.305 0.122 0.294 Lambda K H 0.267 0.0375 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,399,908,014 Number of Sequences: 3077464 Number of extensions: 44339449 Number of successful extensions: 156604 Number of sequences better than 1.0e-01: 33 Number of HSP's better than 0.1 without gapping: 49 Number of HSP's successfully gapped in prelim test: 32 Number of HSP's that attempted gapping in prelim test: 156359 Number of HSP's gapped (non-prelim): 83 length of query: 309 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 181 effective length of database: 646,480,964 effective search space: 117013054484 effective search space used: 117013054484 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 92 (40.2 bits)