236 c3jr1A_ Probab=99.41   E-value=1.1e-11  Score=95.87  Aligned_columns=202  Identities=14%

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999998188998899864053422112217899889878885899997377768888856998999999999998
Q batch____       102 GKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLARWVPRLL  181 (546)
Q Consensus       102 ~~~~~~~~~~~lg~~~~~~~F~~f~~~plasaSigQVhrA~l~~~G~~VaVKV~rP~i~~~~~~Dl~~l~~~~~~~~~~~  181 (546)
                      |..|.+.|.+.+|..     +.-.+-+|++.|.+.+||+.+  ..|+.++||+.+++..+.+......++.+.+..    
T Consensus         8 w~~i~~~l~~~lg~~-----~~i~~~~~l~gG~~n~~y~i~--~~~~~~~lK~~~~~~~~~~~~E~~~L~~L~~~~----   76 (296)
T c3jr1A_           8 WKSISQVLAEQFGAY-----YFIKHKEKLYSGEXNEIWLIN--DEVQTVFVKINERSYRSXFRAEADQLALLAKTN----   76 (296)
T ss_dssp             HHHHHHHHHHHHSSC-----CCCCEEEEECCSSSSEEEEEE--SSSCEEEEEEEEGGGHHHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHHHCCC-----CEEEEEEEECCCCCCEEEEEE--ECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHC----
T ss_conf             899999999980998-----134364760788740389999--689638998478762668999999999999738----


Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECEEC--CCCCCCEEEEECCCCCEE---------
Q ss_conf             876408928899999998898610799999999999950579958954011--478985589872688800---------
Q batch____       182 PDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRRNFEDSPMLYIPEVY--PDYCSEGMMVMERIYGIP---------  250 (546)
Q Consensus       182 ~~~~~~~~~~iv~e~~~~~~~ElDf~~Ea~n~~~~~~~~~~~~~v~vP~v~--~~~~~~~vLvmE~i~G~~---------  250 (546)
                                                                 .+.||+|+  .+..+..+++|||++|..         
T Consensus        77 -------------------------------------------~i~vP~v~~~~~~~g~~~lv~e~i~~~~~~~~~~~~l  113 (296)
T c3jr1A_          77 -------------------------------------------SINVPLVYGIGNSQGHSFLLLEALNKSKNKQSSFTIF  113 (296)
T ss_dssp             -------------------------------------------SSBCCCEEEEEECSSEEEEEEECCCCCCCCTTHHHHH
T ss_pred             -------------------------------------------CCCCCEEEEEECCCCEEEEEEECCCCCCCCHHHHHHH
T ss_conf             -------------------------------------------9768705886166982899997155666793479998


Q ss_pred             -------------------------------------------------HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             -------------------------------------------------8999824678989899999999999999975
Q batch____       251 -------------------------------------------------VSDVAALEKNGTNMKLLAERGVQVFFTQVFR  281 (546)
Q Consensus       251 -------------------------------------------------l~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~  281 (546)
                                                                       +...............+...+.+..-.....
T Consensus       114 g~~lA~lh~~~~~~~~g~~~~~~~g~~~~~n~~~~~w~~f~~~~rl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  193 (296)
T c3jr1A_         114 AEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVADTLSKHNPK  193 (296)
T ss_dssp             HHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             78899987023300157665676564433657545657899985688999878744799268999999999744215788


Q ss_pred             CCHHHCCCCHHHEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             17300379947768603788897599995587110588999877878897761999999999985288884449899999
Q batch____       282 DSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEF  361 (546)
Q Consensus       282 ~G~~HrD~hPgNIlv~~~~~~dg~i~liDFG~~~~l~~~~r~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~~~D~~~l~~  361 (546)
                      .+++|+|+||||+|++     +++++++||. +.--++..--+...++.++.    ...-+...+.-..++..+...--.
T Consensus       194 p~LiHGDl~~gNvl~~-----~~~~~iiDp~-~~~Gd~e~Dla~~~lfg~f~----~~f~~~Y~~~~pl~~~~~~R~~ly  263 (296)
T c3jr1A_         194 PSILHGNLWIENCIQV-----DDKIFVCNPA-CYWGDRECDIAFSSLFEPFP----TNFYQRYNEIYPLEEGYLERKLIY  263 (296)
T ss_dssp             CEEECSSCSGGGEEEE-----TTEEEECSCC-CEEECTHHHHHHHTTSSCCC----HHHHHHHHHHSCCCTTHHHHHHHH
T ss_pred             CEEEECCCCCCCEEEE-----CCEEEEECCH-HHCCCHHHHHHHHHHHCCCC----HHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             5898344635516998-----8969998141-00681899989987527863----899998874079883779889999


Q ss_pred             HHHHHH
Q ss_conf             999984
Q batch____       362 AIRTVC  367 (546)
Q Consensus       362 ~l~~ll  367 (546)
                      .+|.++
T Consensus       264 ~ly~~l  269 (296)
T c3jr1A_         264 QLYYLL  269 (296)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             898999