BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (158 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A4W5B8 Regulator of sigma D n=71 Tax=Enterobacteriaceae... 253 1e-66 UniRef50_C9XTE1 Regulator of sigma D n=2 Tax=Cronobacter RepID=C... 221 6e-57 UniRef50_Q2NWR3 Regulator of sigma D n=1 Tax=Sodalis glossinidiu... 172 2e-42 UniRef50_Q1C1V0 Regulator of sigma D n=78 Tax=Enterobacteriaceae... 171 8e-42 UniRef50_C6CN76 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Dickeya zeae... 112 5e-24 UniRef50_B1KN90 Regulator of RpoD, Rsd/AlgQ n=4 Tax=Alteromonada... 97 1e-19 UniRef50_B8CTX7 Regulator of RNA polymerase sigma(70) subunit, R... 96 5e-19 UniRef50_C4LAY5 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Tolumonas au... 95 6e-19 UniRef50_B4S1E9 Stationary-phase regulator of sigma D, the major... 94 2e-18 UniRef50_Q7MGS1 Regulator of sigma D n=38 Tax=Vibrionaceae RepID... 89 3e-17 UniRef50_B3PGA7 Transcriptional regulator AlgQ n=4 Tax=Gammaprot... 88 8e-17 UniRef50_A1SZJ6 Regulator of RpoD, Rsd/AlgQ n=4 Tax=Alteromonada... 87 1e-16 UniRef50_Q1ZHX9 Regulator of sigma D n=1 Tax=Psychromonas sp. CN... 86 4e-16 UniRef50_Q2BL08 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Neptuniibact... 84 1e-15 UniRef50_A4SRT4 Regulator of SigmaD n=3 Tax=Aeromonas RepID=A4SR... 82 4e-15 UniRef50_Q21EN8 Regulator of RNA polymerase sigma(70) subunit, R... 82 8e-15 UniRef50_A0Y9W1 Regulator of sigma D n=1 Tax=marine gamma proteo... 82 8e-15 UniRef50_P15275 Transcriptional regulatory protein algQ n=28 Tax... 80 1e-14 UniRef50_Q1MYZ4 Regulator of sigma D n=2 Tax=Gammaproteobacteria... 79 6e-14 UniRef50_D0M5M9 Regulator of sigma D n=11 Tax=Vibrionaceae RepID... 78 1e-13 UniRef50_B6ENC0 Regulator of RNA polymerase sigma (70) subunit n... 74 2e-12 UniRef50_B7RZZ8 Putative uncharacterized protein n=1 Tax=marine ... 73 3e-12 UniRef50_UPI0001698913 anti-RNA polymerase sigma 70 factor n=1 T... 57 2e-07 UniRef50_Q1QU59 Alginate regulatory protein AlgQ n=1 Tax=Chromoh... 57 3e-07 UniRef50_A6VTB7 Regulator of sigma D n=2 Tax=Marinomonas RepID=A... 52 5e-06 UniRef50_Q0VSZ1 Regulator of RNA polymerase sigma(70) n=2 Tax=Al... 51 1e-05 >UniRef50_A4W5B8 Regulator of sigma D n=71 Tax=Enterobacteriaceae RepID=RSD_ENT38 Length = 165 Score = 253 bits (646), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 121/150 (80%), Positives = 132/150 (88%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 MLNQL++LTERV GSNKLVDRWLHVRK LLVAYYNLVGIKPGKESYMRLNEKALD+FCQS Sbjct: 1 MLNQLESLTERVGGSNKLVDRWLHVRKQLLVAYYNLVGIKPGKESYMRLNEKALDNFCQS 60 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY 120 LVDYLS GHF+IYERI+ ++EG A K++PQLEANTQQIMDYYDS+LE AID DNY Sbjct: 61 LVDYLSDGHFNIYERIIREMEGTNPYLAATKLYPQLEANTQQIMDYYDSTLENAIDQDNY 120 Query: 121 LEFQQVLSDIGEALEARFVLEDKLILLVLD 150 LEFQQ LSD+GEALE RF LEDKLI L LD Sbjct: 121 LEFQQALSDLGEALEGRFTLEDKLIALALD 150 >UniRef50_C9XTE1 Regulator of sigma D n=2 Tax=Cronobacter RepID=C9XTE1_CROTZ Length = 175 Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 103/150 (68%), Positives = 122/150 (81%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 MLNQL +LTERV GSN+LVDRWL R HLLV YY +VGIKPGKE L+E+ALD+FC Sbjct: 9 MLNQLKSLTERVGGSNELVDRWLGARNHLLVTYYKMVGIKPGKEPMTALDEQALDEFCHC 68 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY 120 LVDYLSAGHF+IYER++ ++EG L A +I+PQLE+NTQQIMD+YD+ LE+AIDHDN Sbjct: 69 LVDYLSAGHFNIYERVISEMEGTSPLVAATQIYPQLESNTQQIMDFYDTHLESAIDHDNC 128 Query: 121 LEFQQVLSDIGEALEARFVLEDKLILLVLD 150 LEFQ+ LS IGEAL ARF LEDKLI+L D Sbjct: 129 LEFQEALSGIGEALAARFALEDKLIMLAYD 158 >UniRef50_Q2NWR3 Regulator of sigma D n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=RSD_SODGM Length = 145 Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 86/145 (59%), Positives = 107/145 (73%), Gaps = 5/145 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 MLNQL+NL + V G+N+L+D+WL RK LLVAYY+L+G+KP KE + L+E+ALD FC Sbjct: 1 MLNQLENLAKCVGGNNELIDQWLQARKGLLVAYYHLIGLKPNKEKHTPLDEEALDAFCHQ 60 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY 120 LVDYLSAGHF +Y+ I+ + E + L + L+ NTQQIM YDS LE AIDHDNY Sbjct: 61 LVDYLSAGHFLVYDSIVPEGESSSTLT-----YSGLQENTQQIMALYDSHLENAIDHDNY 115 Query: 121 LEFQQVLSDIGEALEARFVLEDKLI 145 L FQ+ LS +GEAL RFVLEDKLI Sbjct: 116 LSFQEALSGVGEALATRFVLEDKLI 140 >UniRef50_Q1C1V0 Regulator of sigma D n=78 Tax=Enterobacteriaceae RepID=RSD_YERPA Length = 169 Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 82/147 (55%), Positives = 112/147 (76%), Gaps = 2/147 (1%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 MLN+L++LT+RV GSN+L+D+WLH RK LLV+Y ++GIKP KE + LN K L++FC + Sbjct: 1 MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHN 60 Query: 61 LVDYLSAGHFSIYERILHKLEG--NGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHD 118 LVDYLS+GHF +Y+RI+ ++EG + ++A AKI P L+ NTQ IM ++D ID D Sbjct: 61 LVDYLSSGHFHLYDRIIKEVEGASSPKMALTAKIHPALKNNTQTIMAFHDCYTNIEIDDD 120 Query: 119 NYLEFQQVLSDIGEALEARFVLEDKLI 145 + E+QQ LSDIGEAL+ARF LED+LI Sbjct: 121 SCTEYQQALSDIGEALDARFRLEDQLI 147 >UniRef50_C6CN76 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Dickeya zeae Ech1591 RepID=C6CN76_DICZE Length = 149 Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 73/152 (48%), Positives = 93/152 (61%), Gaps = 6/152 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML QL LTE V G L+D+WL RKHLL+AYY+L+ I+ G+ + L FC Sbjct: 1 MLKQLQRLTEDVGGHYALIDQWLQARKHLLLAYYHLLSIQTGQTP----AAQTLGGFCHH 56 Query: 61 LVDYLSAGHFSIYERILHK--LEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHD 118 LVDYLS GHF +YER+L + + +L A+ L +NTQQIMD YDS L I+ Sbjct: 57 LVDYLSVGHFHVYERMLQESAMLNERKLTLASHFDMALRSNTQQIMDIYDSHLAFFIEPA 116 Query: 119 NYLEFQQVLSDIGEALEARFVLEDKLILLVLD 150 + L F+Q LS +GEAL RF LED LI L+ D Sbjct: 117 DSLAFRQALSGVGEALAMRFTLEDSLIRLMFD 148 >UniRef50_B1KN90 Regulator of RpoD, Rsd/AlgQ n=4 Tax=Alteromonadales RepID=B1KN90_SHEWM Length = 155 Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKAL-DDFCQ 59 ML QL+ +R G+N L+D WL+ R+ LL+ Y + GI P + L L +FC Sbjct: 1 MLKQLEKAEQRWGGANTLIDHWLNNRRKLLINYCKIAGIPPYDSTEKSLPAITLVKEFCD 60 Query: 60 SLVDYLSAGHFSIYERILHKLEGNGQLAR--AAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY+S GHF +Y++++ E NG ++ A K+ P++ T +D+ D E +D Sbjct: 61 QLMDYVSEGHFEVYDQVVTACEKNGVSSKELAQKLVPRISETTDSALDFNDKYTE-LVDD 119 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLI 145 + + LS +G A+E RF LEDKL+ Sbjct: 120 KVLFQLDKDLSSLGHAMETRFELEDKLL 147 >UniRef50_B8CTX7 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ n=20 Tax=Shewanella RepID=B8CTX7_SHEPW Length = 176 Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 84/148 (56%), Gaps = 4/148 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNE-KALDDFCQ 59 ML +L+ ++ GSN L+D+WL+ R++LL+ Y + GI P + + L ++ FC Sbjct: 22 MLRKLEKAEQKWGGSNTLIDQWLNNRRNLLINYCQIAGIPPYEITENTLPAFDSVKAFCD 81 Query: 60 SLVDYLSAGHFSIYERILHKLEGNGQLAR--AAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY+S GHF IY +++ E NG ++ A ++ PQ+ T +D+ D E A D Sbjct: 82 QLMDYVSEGHFEIYNQVVTACEKNGSSSQELAQQLVPQISETTDTALDFNDKYTE-AEDE 140 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLI 145 + LS +G A+E RF LEDKL+ Sbjct: 141 KVLFHLDKDLSSLGHAMETRFALEDKLL 168 >UniRef50_C4LAY5 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LAY5_TOLAT Length = 168 Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 85/152 (55%), Gaps = 7/152 (4%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML LD + E+V G + +D WL VR+ LLV Y L G+ P + E AL DFC Sbjct: 1 MLVTLDKIREQVAGKHPAIDAWLDVRRTLLVEYMQLAGLMPPYSKTLPSKE-ALSDFCDR 59 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQ----LARAAKIWPQLEANTQQIMDYYDSSLETAID 116 LVDY+SAGHF IYE ++ E + L+ ++ +++ T+ I+D+ + + I Sbjct: 60 LVDYISAGHFEIYEILIDAYEKVQEKEHHLSLTNRLIDRIQDTTESILDFNERYGD--IS 117 Query: 117 HDNYLEFQQVLSDIGEALEARFVLEDKLILLV 148 D E + LS +G LE RF LEDKL+L++ Sbjct: 118 DDEMPELEADLSQLGLTLEERFKLEDKLVLVL 149 >UniRef50_B4S1E9 Stationary-phase regulator of sigma D, the major sigma subunit of RNA polymerase n=2 Tax=Alteromonas macleodii RepID=B4S1E9_ALTMD Length = 154 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 85/145 (58%), Gaps = 5/145 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML QL+++ R G +++VDRWL R+ LLV++ L GI ES +E A +FC + Sbjct: 1 MLQQLESVKSRWGGKSQVVDRWLMDRQALLVSFCELAGINKQSESLPDADEIA--NFCSA 58 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY 120 L+DYLSAGHF +++ IL + + G L K++P+L T + + D + A+ + Sbjct: 59 LLDYLSAGHFEVFD-ILVEDDDEG-LDLKDKLYPKLTKTTDAALAFND-TFAQAVTPEQA 115 Query: 121 LEFQQVLSDIGEALEARFVLEDKLI 145 F L+ +GE LE RF LED+LI Sbjct: 116 AGFDAALAQLGETLEERFALEDELI 140 >UniRef50_Q7MGS1 Regulator of sigma D n=38 Tax=Vibrionaceae RepID=Q7MGS1_VIBVY Length = 164 Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 8/164 (4%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKP--GKESYMRL-NEKALDDF 57 ML + E+ GS++++D WL R+ L+V Y L ++P K + + L + L F Sbjct: 3 MLKKFKQTQEQWGGSSEVIDHWLETRQSLIVEYCKLAALQPCSTKSNVLELPSPHELQQF 62 Query: 58 CQSLVDYLSAGHFSIYERILHKLEGNGQLARAA--KIWPQLEANTQQIMDYYDSSLETAI 115 CQ LVDY+S GHF IY+ ++ K G A + + ++ T+ ++ + D + ++ Sbjct: 63 CQHLVDYISEGHFKIYDMVMDKWRATGFEATTEINETYAKIVLTTEPLLSFTD--MYASV 120 Query: 116 DHDNYLE-FQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA 158 D+ LE F+ LS +GE +E RF +ED LI L+ D+ V A Sbjct: 121 GEDDPLESFEPDLSKVGEIIELRFEVEDHLIQLIADSLSVPPGA 164 >UniRef50_B3PGA7 Transcriptional regulator AlgQ n=4 Tax=Gammaproteobacteria RepID=B3PGA7_CELJU Length = 155 Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 8/148 (5%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML + ER G ++++DRWL R+ +LV Y +L ++ ++ L L + CQ Sbjct: 1 MLENCKSAKERWGGVSEIIDRWLEERQQMLVQYCDLSALEA-TDANEALRGHKLRELCQI 59 Query: 61 LVDYLSAGHFSIYERIL---HKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 LVDY+SAGHF IY++++ + E L A K++ ++ T+ ++D+ D LET Sbjct: 60 LVDYVSAGHFEIYDQLIKEGREFEDEEALQEAGKLYAVVDETTETLLDFNDKYLET---- 115 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLI 145 D+ LS +GE+LE RF ED++I Sbjct: 116 DDLGSLSDDLSRLGESLETRFSAEDRMI 143 >UniRef50_A1SZJ6 Regulator of RpoD, Rsd/AlgQ n=4 Tax=Alteromonadales RepID=A1SZJ6_PSYIN Length = 157 Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 86/151 (56%), Gaps = 4/151 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLN-EKALDDFCQ 59 ML +L+ E G ++D WL R+ L+V Y L G+ P +E+ L ++ + FCQ Sbjct: 1 MLTKLERAKEEWGGRLSVIDNWLEERQTLVVVYCKLAGLPPYQETNHSLPAQEKITHFCQ 60 Query: 60 SLVDYLSAGHFSIYERILH--KLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY S GHF IYE+I+ KL+G L A +++ ++ T + + D E+A + Sbjct: 61 LLLDYASTGHFEIYEQIITQCKLDGENNLKIAQELYSRITTTTDAALSFNDKYAESA-NE 119 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLV 148 ++F + LS++G+ +E RF ED+L+ +V Sbjct: 120 QALVDFDRDLSNLGQLMEERFEREDQLLEVV 150 >UniRef50_Q1ZHX9 Regulator of sigma D n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZHX9_9GAMM Length = 157 Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 87/152 (57%), Gaps = 4/152 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRL-NEKALDDFCQ 59 ML ++ + G+ ++D WL R+ L+V Y LVG ++ L ++K + +FCQ Sbjct: 1 MLRNIEKVKAEWGGTLNVIDGWLANRQQLVVLYCKLVGTSTEQQKKQELPSQKEITNFCQ 60 Query: 60 SLVDYLSAGHFSIYERIL--HKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 +L+DY S GHF IYE+I+ KL+G L A +++ ++ T +++ D E A + Sbjct: 61 TLLDYTSTGHFGIYEQIILQCKLDGEQNLKIAQELYSRITTTTDTALNFNDKYAENATEI 120 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVL 149 L+F LS++G+ +E RF ED+L+ +++ Sbjct: 121 -ALLDFDDDLSELGQKMEERFEREDQLLEVLM 151 >UniRef50_Q2BL08 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Neptuniibacter caesariensis RepID=Q2BL08_9GAMM Length = 156 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/160 (35%), Positives = 85/160 (53%), Gaps = 26/160 (16%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML + N ER G ++++D WL R+ L+ + +L P LN K + FCQ Sbjct: 1 MLEKCKNAKERWGGVSEIIDSWLEERQALISQFVHL----PEHHINDELNTK-VQSFCQV 55 Query: 61 LVDYLSAGHFSIYERILHKLEG----NGQLARAAKIWPQLEANTQQIMDYYDSSLETAID 116 L+DYLS+GHF +YE++L EG +G L I P+++ +T +D+ D D Sbjct: 56 LMDYLSSGHFEVYEQLLR--EGSDFDDGSLEEGQSILPKIQISTDVALDFND-------D 106 Query: 117 HDNYL--------EFQQVLSDIGEALEARFVLEDKLILLV 148 N L EF + LS +GEALE RF LED++I ++ Sbjct: 107 FSNLLDPTVQQIREFSERLSKLGEALEERFELEDQMIAVL 146 >UniRef50_A4SRT4 Regulator of SigmaD n=3 Tax=Aeromonas RepID=A4SRT4_AERS4 Length = 168 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 5/148 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKA-LDDFCQ 59 ML +L+ + G ++ +D WL R+ LLV Y L G+ P + L + L FC Sbjct: 9 MLTELEKTKRALAGKHRAIDDWLDARQALLVEYMRLAGLTPARNKQRSLPSPSELQRFCD 68 Query: 60 SLVDYLSAGHFSIYERILHKLE--GNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 LVDY+SAGHF IY ++ E +L A +I+P + T+ +++ D + D Sbjct: 69 QLVDYVSAGHFEIYNHVVAAFEQASGDKLELAKRIYPHIRECTEFALEFNDKY--SNADE 126 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLI 145 L + L+ +G LE RF ED+L+ Sbjct: 127 AQMLLLDEDLNQLGPVLEDRFKQEDRLV 154 >UniRef50_Q21EN8 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ n=2 Tax=Gammaproteobacteria RepID=Q21EN8_SACD2 Length = 154 Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 9/148 (6%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML + ER G ++++DRWL R+ +LV Y NL I + R + + C+ Sbjct: 1 MLEDCKSAQERWGGVSEIIDRWLQERQQMLVLYCNLSEICDLPDHPERAAQ--VKTLCEI 58 Query: 61 LVDYLSAGHFSIYERILH---KLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 +VDY+SAGHF IY ++L + E L +A +++ ++++T+ +D+ D LET Sbjct: 59 VVDYVSAGHFEIYNQLLQEGEEFEDQEGLKQAGELFKIIDSSTEVALDFNDKYLET---- 114 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLI 145 D+ Q LS +GE+L +RF EDK+I Sbjct: 115 DDLETINQDLSHLGESLVSRFEAEDKMI 142 >UniRef50_A0Y9W1 Regulator of sigma D n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y9W1_9GAMM Length = 154 Score = 81.6 bits (200), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 82/151 (54%), Gaps = 20/151 (13%) Query: 5 LDNLT--ERVRGSNKLVDRWLHVRKHLLVAYYNLVGI----KPGKESYMRLNEKALDDFC 58 LDN T ER +KLV+RWL R+ ++V + L G+ + S MRL +FC Sbjct: 2 LDNCTIEERWNAVDKLVERWLQERQLVIVQFCALSGVHELNQDDDPSSMRLQ-----NFC 56 Query: 59 QSLVDYLSAGHFSIYERILHKLEG--NGQLARAAKIWPQLEANTQQIMDYYD--SSLETA 114 Q LVDY+SAGHF +Y ++ + E +G + A + P++ T+ MD+ D +S + Sbjct: 57 QLLVDYMSAGHFEVYYEVIREAEAFQDGSVNLAKGLMPEITLTTKISMDFNDLYTSGKGD 116 Query: 115 IDHDNYLEFQQVLSDIGEALEARFVLEDKLI 145 + H LS +GE L ARF LED+LI Sbjct: 117 LGH-----LSSSLSKLGENLAARFELEDQLI 142 >UniRef50_P15275 Transcriptional regulatory protein algQ n=28 Tax=cellular organisms RepID=ALGQ_PSEAE Length = 160 Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 16/157 (10%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML N ER G ++L+DRWLH R+ L+ A+ L GI+ N + L FCQ Sbjct: 1 MLESCRNAQERWGGVHQLIDRWLHERQQLVQAFDALSGIQAPAP-----NAEELQHFCQL 55 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQ---LARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY+SAGHF +YE++ + + G L A +I+P+LEA T+ +++ D D+ Sbjct: 56 LLDYVSAGHFEVYEQLTAEGKAFGDQRGLELAKQIFPRLEAITESALNFNDR-----CDN 110 Query: 118 DNYLEFQQVLSDIG---EALEARFVLEDKLILLVLDA 151 + E +++++ + L RF LED LI ++ +A Sbjct: 111 GDCREGACLIAELKVLRQQLHERFELEDCLIEVLHNA 147 >UniRef50_Q1MYZ4 Regulator of sigma D n=2 Tax=Gammaproteobacteria RepID=Q1MYZ4_9GAMM Length = 158 Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 10/136 (7%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML + ER G + L+DRWL R+++LV Y+ + G+KP L+ K ++ FCQ Sbjct: 1 MLESTKDAQERWGGVHDLIDRWLSERQNMLVLYFAIRGLKPFSPRETPLSVK-VEAFCQV 59 Query: 61 LVDYLSAGHFSIYERILHKLE--GNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHD 118 L+DYLSAGHF IYE++L + + +G + A K +P+LE T++ +++ D +D Sbjct: 60 LMDYLSAGHFEIYEKLLLEAQEYDDGGIDLARKHYPRLEQITERCVEFNDK-------YD 112 Query: 119 NYLEFQQVLSDIGEAL 134 N + LSD+ + L Sbjct: 113 NAEHCLEQLSDLPKDL 128 >UniRef50_D0M5M9 Regulator of sigma D n=11 Tax=Vibrionaceae RepID=D0M5M9_VIBSE Length = 161 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 80/149 (53%), Gaps = 5/149 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKP-GKESYMRLNEKA-LDDFC 58 ML + ++ GS+ ++D WL R+ L+V Y L ++P K + + L + L DFC Sbjct: 1 MLKKFKQTQDQWGGSSDVIDHWLETRQSLIVEYCKLAALQPCSKTNVIELPSPSELQDFC 60 Query: 59 QSLVDYLSAGHFSIYERILHKLEGNGQLA--RAAKIWPQLEANTQQIMDYYDSSLETAID 116 Q LVDY+S GHF IY+ ++ + + G + + + Q+ T+ ++++ D E + Sbjct: 61 QHLVDYISEGHFKIYDMVMDRWKATGFVVTNEINQTYGQIVLTTEPLLNFNDKYSEVT-E 119 Query: 117 HDNYLEFQQVLSDIGEALEARFVLEDKLI 145 D +F + IGE LE RF +ED LI Sbjct: 120 DDELDDFDSDMCLIGEILETRFEVEDYLI 148 >UniRef50_B6ENC0 Regulator of RNA polymerase sigma (70) subunit n=10 Tax=Vibrionales RepID=B6ENC0_ALISL Length = 169 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 86/163 (52%), Gaps = 10/163 (6%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKP-GKESYMRLNEKALDDFCQ 59 ML +L+ E G+++++D WL R+ LLV Y L G+ P + + ++ F Q Sbjct: 10 MLTKLNQFQEEWGGNSEVIDHWLSTRQDLLVEYCKLAGLPPFDSSNSSLPSFSSIQLFTQ 69 Query: 60 SLVDYLSAGHFSIYERILHKLEGNG--QLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY+S GHF IY ++ K + G ++++ ++ T ++++ D + + ++ Sbjct: 70 HLIDYISEGHFKIYNMVMAKWDSTGFSPTEEMSQLYAKITKTTDPMLNFTD---KYSQEN 126 Query: 118 DNYL--EFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA 158 ++ L +F + S +GE + RF LED LI + A + HP Sbjct: 127 EDLLLSDFDKDFSILGETIGERFELEDGLIEQI--ATSLNHPP 167 >UniRef50_B7RZZ8 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RZZ8_9GAMM Length = 153 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 75/136 (55%), Gaps = 14/136 (10%) Query: 16 NKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALD----DFCQSLVDYLSAGHFS 71 +L+ RWL R+ LL Y + G L+++ALD CQ LVDY+S+GHF Sbjct: 14 EELLTRWLKERRELLGKYTEIAVGMDGM-----LDQEALDLRQRALCQQLVDYVSSGHFE 68 Query: 72 IYERILHKLE--GNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSD 129 +Y + + E +G AAK+ P + T+ IM Y + T+ D D + ++ LS Sbjct: 69 VYLELFEEAESFADGSNVVAAKLMPAIVDTTEIIMAYEEKY--TSQDSDK-AKVKRDLSS 125 Query: 130 IGEALEARFVLEDKLI 145 +GE LE+RF+LED+LI Sbjct: 126 LGEVLESRFLLEDRLI 141 >UniRef50_UPI0001698913 anti-RNA polymerase sigma 70 factor n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698913 Length = 150 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 7/111 (6%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLN--EKALDDFC 58 M Q ER G+ +++ + R+ +LV + + G++P Y R E+ L +FC Sbjct: 21 MSTQQQATAERRTGTQGMINNLMEERRQMLVLFCQVAGLEP----YARTESLEQLLQNFC 76 Query: 59 QSLVDYLSAGHFSIYERILHKLEGNGQLARAA-KIWPQLEANTQQIMDYYD 108 Q LVDY + GHF ++ +I E Q+ A +I+P T+ + + D Sbjct: 77 QVLVDYTAFGHFEVFGKISDGTERRSQVLHVAEEIYPGFVEATETAVAFND 127 >UniRef50_Q1QU59 Alginate regulatory protein AlgQ n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QU59_CHRSD Length = 169 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMR-LNEKALDDFCQ 59 ML ER G + L+DRWL R+ +LV LV ++ ++ + + ++ +D F + Sbjct: 1 MLEDTKTALERWGGVHTLIDRWLEQRRDMLV---TLVELQEACDAELETVTKERIDAFSE 57 Query: 60 SLVDYLSAGHFSIYERILHK---LEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAID 116 +L+DY+S GHF IY ++ + + LA A + +LE +TQ +++ +D+ T + Sbjct: 58 TLMDYISGGHFEIYPQLRDEAVAFDDQEALALADHLLARLEMSTQMVLE-FDNDYSTPVR 116 Query: 117 HDNY-LEFQQVLSDIGEALEARFVLEDKLI 145 +Y L + + L RF LED+LI Sbjct: 117 CQHYAARLPAWLERLTKGLTERFALEDQLI 146 >UniRef50_A6VTB7 Regulator of sigma D n=2 Tax=Marinomonas RepID=A6VTB7_MARMS Length = 156 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 25/157 (15%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMR-------LNEKA 53 ML ER G + ++DRWL R+ LL +GI Y+R ++ Sbjct: 1 MLEGCKTAQERWGGVHVIIDRWLEQRRQLLE-----MGI------YLRERGELTPMDTPK 49 Query: 54 LDDFCQSLVDYLSAGHFSIYERI---LHKLEGNGQLARAAKIWPQLEANTQQIMDYYDS- 109 + FC+ LVDY+SAGHF++YE++ + +G + ++ P +++ T+ +++ D Sbjct: 50 IQLFCEQLVDYVSAGHFTVYEQLALEAKEFHDDGAVILLRELLPLIDSTTEVAIEFNDKY 109 Query: 110 -SLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLI 145 + E L F L + + RF ED+LI Sbjct: 110 DTKEHCNAQLEALPFS--LQALAIVMAERFQYEDQLI 144 >UniRef50_Q0VSZ1 Regulator of RNA polymerase sigma(70) n=2 Tax=Alcanivorax RepID=Q0VSZ1_ALCBS Length = 166 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 36/152 (23%) Query: 18 LVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNE------KALDDFCQSLVDYLSAGHFS 71 LV WL R+ L+V + G+K S ++ N+ + + FCQ L+DY+SAG+F Sbjct: 18 LVQAWLDERQQLIVLLCTMQGLK--GLSAVQPNDNPQPIHRQVQRFCQLLMDYISAGYFE 75 Query: 72 IYERIL----HKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLE----- 122 +Y ++ H N L R QI+ D S + A+ + E Sbjct: 76 VYRELVNEARHFQRDNPTLTR-------------QILAKLDRSTDAALAFNEDFEHPDQC 122 Query: 123 ------FQQVLSDIGEALEARFVLEDKLILLV 148 + +S + E LE RF LED+LIL + Sbjct: 123 LAQRDVLPERISALMETLEERFALEDQLILSI 154 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C9XTE1 Regulator of sigma D n=2 Tax=Cronobacter RepID=C... 215 3e-55 UniRef50_A4W5B8 Regulator of sigma D n=71 Tax=Enterobacteriaceae... 214 8e-55 UniRef50_Q1C1V0 Regulator of sigma D n=78 Tax=Enterobacteriaceae... 198 6e-50 UniRef50_B1KN90 Regulator of RpoD, Rsd/AlgQ n=4 Tax=Alteromonada... 195 5e-49 UniRef50_B8CTX7 Regulator of RNA polymerase sigma(70) subunit, R... 194 7e-49 UniRef50_Q7MGS1 Regulator of sigma D n=38 Tax=Vibrionaceae RepID... 190 2e-47 UniRef50_Q2NWR3 Regulator of sigma D n=1 Tax=Sodalis glossinidiu... 187 1e-46 UniRef50_A1SZJ6 Regulator of RpoD, Rsd/AlgQ n=4 Tax=Alteromonada... 185 5e-46 UniRef50_D0M5M9 Regulator of sigma D n=11 Tax=Vibrionaceae RepID... 180 9e-45 UniRef50_B3PGA7 Transcriptional regulator AlgQ n=4 Tax=Gammaprot... 180 1e-44 UniRef50_B6ENC0 Regulator of RNA polymerase sigma (70) subunit n... 179 2e-44 UniRef50_Q1ZHX9 Regulator of sigma D n=1 Tax=Psychromonas sp. CN... 175 4e-43 UniRef50_Q21EN8 Regulator of RNA polymerase sigma(70) subunit, R... 174 9e-43 UniRef50_P15275 Transcriptional regulatory protein algQ n=28 Tax... 168 3e-41 UniRef50_B4S1E9 Stationary-phase regulator of sigma D, the major... 168 5e-41 UniRef50_Q2BL08 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Neptuniibact... 167 1e-40 UniRef50_A4SRT4 Regulator of SigmaD n=3 Tax=Aeromonas RepID=A4SR... 167 2e-40 UniRef50_C4LAY5 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Tolumonas au... 163 1e-39 UniRef50_Q1MYZ4 Regulator of sigma D n=2 Tax=Gammaproteobacteria... 158 6e-38 UniRef50_A0Y9W1 Regulator of sigma D n=1 Tax=marine gamma proteo... 158 6e-38 UniRef50_A6VTB7 Regulator of sigma D n=2 Tax=Marinomonas RepID=A... 153 1e-36 UniRef50_C6CN76 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Dickeya zeae... 150 2e-35 UniRef50_Q1QU59 Alginate regulatory protein AlgQ n=1 Tax=Chromoh... 135 3e-31 UniRef50_B7RZZ8 Putative uncharacterized protein n=1 Tax=marine ... 132 5e-30 UniRef50_Q0VSZ1 Regulator of RNA polymerase sigma(70) n=2 Tax=Al... 129 3e-29 UniRef50_UPI0001698913 anti-RNA polymerase sigma 70 factor n=1 T... 128 5e-29 Sequences not found previously or not previously below threshold: UniRef50_Q5P4L9 Putative uncharacterized protein n=1 Tax=Aromato... 45 7e-04 UniRef50_C4R0D0 Putative uncharacterized protein n=1 Tax=Pichia ... 41 0.009 >UniRef50_C9XTE1 Regulator of sigma D n=2 Tax=Cronobacter RepID=C9XTE1_CROTZ Length = 175 Score = 215 bits (549), Expect = 3e-55, Method: Composition-based stats. Identities = 103/150 (68%), Positives = 122/150 (81%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 MLNQL +LTERV GSN+LVDRWL R HLLV YY +VGIKPGKE L+E+ALD+FC Sbjct: 9 MLNQLKSLTERVGGSNELVDRWLGARNHLLVTYYKMVGIKPGKEPMTALDEQALDEFCHC 68 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY 120 LVDYLSAGHF+IYER++ ++EG L A +I+PQLE+NTQQIMD+YD+ LE+AIDHDN Sbjct: 69 LVDYLSAGHFNIYERVISEMEGTSPLVAATQIYPQLESNTQQIMDFYDTHLESAIDHDNC 128 Query: 121 LEFQQVLSDIGEALEARFVLEDKLILLVLD 150 LEFQ+ LS IGEAL ARF LEDKLI+L D Sbjct: 129 LEFQEALSGIGEALAARFALEDKLIMLAYD 158 >UniRef50_A4W5B8 Regulator of sigma D n=71 Tax=Enterobacteriaceae RepID=RSD_ENT38 Length = 165 Score = 214 bits (545), Expect = 8e-55, Method: Composition-based stats. Identities = 121/150 (80%), Positives = 132/150 (88%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 MLNQL++LTERV GSNKLVDRWLHVRK LLVAYYNLVGIKPGKESYMRLNEKALD+FCQS Sbjct: 1 MLNQLESLTERVGGSNKLVDRWLHVRKQLLVAYYNLVGIKPGKESYMRLNEKALDNFCQS 60 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY 120 LVDYLS GHF+IYERI+ ++EG A K++PQLEANTQQIMDYYDS+LE AID DNY Sbjct: 61 LVDYLSDGHFNIYERIIREMEGTNPYLAATKLYPQLEANTQQIMDYYDSTLENAIDQDNY 120 Query: 121 LEFQQVLSDIGEALEARFVLEDKLILLVLD 150 LEFQQ LSD+GEALE RF LEDKLI L LD Sbjct: 121 LEFQQALSDLGEALEGRFTLEDKLIALALD 150 >UniRef50_Q1C1V0 Regulator of sigma D n=78 Tax=Enterobacteriaceae RepID=RSD_YERPA Length = 169 Score = 198 bits (503), Expect = 6e-50, Method: Composition-based stats. Identities = 82/153 (53%), Positives = 114/153 (74%), Gaps = 2/153 (1%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 MLN+L++LT+RV GSN+L+D+WLH RK LLV+Y ++GIKP KE + LN K L++FC + Sbjct: 1 MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHN 60 Query: 61 LVDYLSAGHFSIYERILHKLEG--NGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHD 118 LVDYLS+GHF +Y+RI+ ++EG + ++A AKI P L+ NTQ IM ++D ID D Sbjct: 61 LVDYLSSGHFHLYDRIIKEVEGASSPKMALTAKIHPALKNNTQTIMAFHDCYTNIEIDDD 120 Query: 119 NYLEFQQVLSDIGEALEARFVLEDKLILLVLDA 151 + E+QQ LSDIGEAL+ARF LED+LI ++ Sbjct: 121 SCTEYQQALSDIGEALDARFRLEDQLIQWAAES 153 >UniRef50_B1KN90 Regulator of RpoD, Rsd/AlgQ n=4 Tax=Alteromonadales RepID=B1KN90_SHEWM Length = 155 Score = 195 bits (495), Expect = 5e-49, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 4/152 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKAL-DDFCQ 59 ML QL+ +R G+N L+D WL+ R+ LL+ Y + GI P + L L +FC Sbjct: 1 MLKQLEKAEQRWGGANTLIDHWLNNRRKLLINYCKIAGIPPYDSTEKSLPAITLVKEFCD 60 Query: 60 SLVDYLSAGHFSIYERILHKLEGNG--QLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY+S GHF +Y++++ E NG A K+ P++ T +D+ D E +D Sbjct: 61 QLMDYVSEGHFEVYDQVVTACEKNGVSSKELAQKLVPRISETTDSALDFNDKYTE-LVDD 119 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVL 149 + + LS +G A+E RF LEDKL+ ++ Sbjct: 120 KVLFQLDKDLSSLGHAMETRFELEDKLLEVLH 151 >UniRef50_B8CTX7 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ n=20 Tax=Shewanella RepID=B8CTX7_SHEPW Length = 176 Score = 194 bits (494), Expect = 7e-49, Method: Composition-based stats. Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 4/152 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNE-KALDDFCQ 59 ML +L+ ++ GSN L+D+WL+ R++LL+ Y + GI P + + L ++ FC Sbjct: 22 MLRKLEKAEQKWGGSNTLIDQWLNNRRNLLINYCQIAGIPPYEITENTLPAFDSVKAFCD 81 Query: 60 SLVDYLSAGHFSIYERILHKLEGNGQL--ARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY+S GHF IY +++ E NG A ++ PQ+ T +D+ D E A D Sbjct: 82 QLMDYVSEGHFEIYNQVVTACEKNGSSSQELAQQLVPQISETTDTALDFNDKYTE-AEDE 140 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVL 149 + LS +G A+E RF LEDKL+ ++ Sbjct: 141 KVLFHLDKDLSSLGHAMETRFALEDKLLEVLH 172 >UniRef50_Q7MGS1 Regulator of sigma D n=38 Tax=Vibrionaceae RepID=Q7MGS1_VIBVY Length = 164 Score = 190 bits (482), Expect = 2e-47, Method: Composition-based stats. Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRL---NEKALDDF 57 ML + E+ GS++++D WL R+ L+V Y L ++P L + L F Sbjct: 3 MLKKFKQTQEQWGGSSEVIDHWLETRQSLIVEYCKLAALQPCSTKSNVLELPSPHELQQF 62 Query: 58 CQSLVDYLSAGHFSIYERILHKLEGNG--QLARAAKIWPQLEANTQQIMDYYDSSLETAI 115 CQ LVDY+S GHF IY+ ++ K G + + ++ T+ ++ + D Sbjct: 63 CQHLVDYISEGHFKIYDMVMDKWRATGFEATTEINETYAKIVLTTEPLLSFTDMYASVG- 121 Query: 116 DHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA 158 + D F+ LS +GE +E RF +ED LI L+ D+ V A Sbjct: 122 EDDPLESFEPDLSKVGEIIELRFEVEDHLIQLIADSLSVPPGA 164 >UniRef50_Q2NWR3 Regulator of sigma D n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=RSD_SODGM Length = 145 Score = 187 bits (474), Expect = 1e-46, Method: Composition-based stats. Identities = 86/150 (57%), Positives = 109/150 (72%), Gaps = 5/150 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 MLNQL+NL + V G+N+L+D+WL RK LLVAYY+L+G+KP KE + L+E+ALD FC Sbjct: 1 MLNQLENLAKCVGGNNELIDQWLQARKGLLVAYYHLIGLKPNKEKHTPLDEEALDAFCHQ 60 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY 120 LVDYLSAGHF +Y+ I+ + E + L + L+ NTQQIM YDS LE AIDHDNY Sbjct: 61 LVDYLSAGHFLVYDSIVPEGESSSTLT-----YSGLQENTQQIMALYDSHLENAIDHDNY 115 Query: 121 LEFQQVLSDIGEALEARFVLEDKLILLVLD 150 L FQ+ LS +GEAL RFVLEDKLI ++ Sbjct: 116 LSFQEALSGVGEALATRFVLEDKLIQQAME 145 >UniRef50_A1SZJ6 Regulator of RpoD, Rsd/AlgQ n=4 Tax=Alteromonadales RepID=A1SZJ6_PSYIN Length = 157 Score = 185 bits (469), Expect = 5e-46, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 86/152 (56%), Gaps = 4/152 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLN-EKALDDFCQ 59 ML +L+ E G ++D WL R+ L+V Y L G+ P +E+ L ++ + FCQ Sbjct: 1 MLTKLERAKEEWGGRLSVIDNWLEERQTLVVVYCKLAGLPPYQETNHSLPAQEKITHFCQ 60 Query: 60 SLVDYLSAGHFSIYERIL--HKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY S GHF IYE+I+ KL+G L A +++ ++ T + + D E+A + Sbjct: 61 LLLDYASTGHFEIYEQIITQCKLDGENNLKIAQELYSRITTTTDAALSFNDKYAESA-NE 119 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVL 149 ++F + LS++G+ +E RF ED+L+ +V Sbjct: 120 QALVDFDRDLSNLGQLMEERFEREDQLLEVVH 151 >UniRef50_D0M5M9 Regulator of sigma D n=11 Tax=Vibrionaceae RepID=D0M5M9_VIBSE Length = 161 Score = 180 bits (458), Expect = 9e-45, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 5/162 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKP-GKESYMRLNEKA-LDDFC 58 ML + ++ GS+ ++D WL R+ L+V Y L ++P K + + L + L DFC Sbjct: 1 MLKKFKQTQDQWGGSSDVIDHWLETRQSLIVEYCKLAALQPCSKTNVIELPSPSELQDFC 60 Query: 59 QSLVDYLSAGHFSIYERILHKLEGNGQLA--RAAKIWPQLEANTQQIMDYYDSSLETAID 116 Q LVDY+S GHF IY+ ++ + + G + + + Q+ T+ ++++ D E + Sbjct: 61 QHLVDYISEGHFKIYDMVMDRWKATGFVVTNEINQTYGQIVLTTEPLLNFNDKYSEVT-E 119 Query: 117 HDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA 158 D +F + IGE LE RF +ED LI + ++ + A Sbjct: 120 DDELDDFDSDMCLIGEILETRFEVEDYLIQQIAESLSMPPGA 161 >UniRef50_B3PGA7 Transcriptional regulator AlgQ n=4 Tax=Gammaproteobacteria RepID=B3PGA7_CELJU Length = 155 Score = 180 bits (457), Expect = 1e-44, Method: Composition-based stats. Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 8/154 (5%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML + ER G ++++DRWL R+ +LV Y +L ++ ++ L L + CQ Sbjct: 1 MLENCKSAKERWGGVSEIIDRWLEERQQMLVQYCDLSALE-ATDANEALRGHKLRELCQI 59 Query: 61 LVDYLSAGHFSIYERIL---HKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 LVDY+SAGHF IY++++ + E L A K++ ++ T+ ++D+ D LET Sbjct: 60 LVDYVSAGHFEIYDQLIKEGREFEDEEALQEAGKLYAVVDETTETLLDFNDKYLET---- 115 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDA 151 D+ LS +GE+LE RF ED++I ++ + Sbjct: 116 DDLGSLSDDLSRLGESLETRFSAEDRMISVLHTS 149 >UniRef50_B6ENC0 Regulator of RNA polymerase sigma (70) subunit n=10 Tax=Vibrionales RepID=B6ENC0_ALISL Length = 169 Score = 179 bits (455), Expect = 2e-44, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 6/161 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKP-GKESYMRLNEKALDDFCQ 59 ML +L+ E G+++++D WL R+ LLV Y L G+ P + + ++ F Q Sbjct: 10 MLTKLNQFQEEWGGNSEVIDHWLSTRQDLLVEYCKLAGLPPFDSSNSSLPSFSSIQLFTQ 69 Query: 60 SLVDYLSAGHFSIYERILHKLEGNG--QLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY+S GHF IY ++ K + G ++++ ++ T ++++ D + Sbjct: 70 HLIDYISEGHFKIYNMVMAKWDSTGFSPTEEMSQLYAKITKTTDPMLNFTDKY-SQENED 128 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA 158 +F + S +GE + RF LED LI + A + HP Sbjct: 129 LLLSDFDKDFSILGETIGERFELEDGLIEQI--ATSLNHPP 167 >UniRef50_Q1ZHX9 Regulator of sigma D n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZHX9_9GAMM Length = 157 Score = 175 bits (444), Expect = 4e-43, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 86/152 (56%), Gaps = 4/152 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLN-EKALDDFCQ 59 ML ++ + G+ ++D WL R+ L+V Y LVG ++ L +K + +FCQ Sbjct: 1 MLRNIEKVKAEWGGTLNVIDGWLANRQQLVVLYCKLVGTSTEQQKKQELPSQKEITNFCQ 60 Query: 60 SLVDYLSAGHFSIYERIL--HKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 +L+DY S GHF IYE+I+ KL+G L A +++ ++ T +++ D E A + Sbjct: 61 TLLDYTSTGHFGIYEQIILQCKLDGEQNLKIAQELYSRITTTTDTALNFNDKYAENATEI 120 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVL 149 L+F LS++G+ +E RF ED+L+ +++ Sbjct: 121 A-LLDFDDDLSELGQKMEERFEREDQLLEVLM 151 >UniRef50_Q21EN8 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ n=2 Tax=Gammaproteobacteria RepID=Q21EN8_SACD2 Length = 154 Score = 174 bits (441), Expect = 9e-43, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 9/152 (5%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML + ER G ++++DRWL R+ +LV Y NL I + R + + C+ Sbjct: 1 MLEDCKSAQERWGGVSEIIDRWLQERQQMLVLYCNLSEICDLPDHPERAAQ--VKTLCEI 58 Query: 61 LVDYLSAGHFSIYERILH---KLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 +VDY+SAGHF IY ++L + E L +A +++ ++++T+ +D+ D LET Sbjct: 59 VVDYVSAGHFEIYNQLLQEGEEFEDQEGLKQAGELFKIIDSSTEVALDFNDKYLET---- 114 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVL 149 D+ Q LS +GE+L +RF EDK+I ++ Sbjct: 115 DDLETINQDLSHLGESLVSRFEAEDKMIEVLH 146 >UniRef50_P15275 Transcriptional regulatory protein algQ n=28 Tax=cellular organisms RepID=ALGQ_PSEAE Length = 160 Score = 168 bits (427), Expect = 3e-41, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML N ER G ++L+DRWLH R+ L+ A+ L GI+ N + L FCQ Sbjct: 1 MLESCRNAQERWGGVHQLIDRWLHERQQLVQAFDALSGIQAPAP-----NAEELQHFCQL 55 Query: 61 LVDYLSAGHFSIYERILHKLE---GNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY+SAGHF +YE++ + + L A +I+P+LEA T+ +++ D Sbjct: 56 LLDYVSAGHFEVYEQLTAEGKAFGDQRGLELAKQIFPRLEAITESALNFNDRCDNGDCRE 115 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAAR 153 L L + + L RF LED LI ++ +A Sbjct: 116 GACLI--AELKVLRQQLHERFELEDCLIEVLHNAHS 149 >UniRef50_B4S1E9 Stationary-phase regulator of sigma D, the major sigma subunit of RNA polymerase n=2 Tax=Alteromonas macleodii RepID=B4S1E9_ALTMD Length = 154 Score = 168 bits (426), Expect = 5e-41, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 5/155 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML QL+++ R G +++VDRWL R+ LLV++ L GI ES + + +FC + Sbjct: 1 MLQQLESVKSRWGGKSQVVDRWLMDRQALLVSFCELAGINKQSESL--PDADEIANFCSA 58 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY 120 L+DYLSAGHF +++ ++ + + L K++P+L T + + D + A+ + Sbjct: 59 LLDYLSAGHFEVFDILVE--DDDEGLDLKDKLYPKLTKTTDAALAFND-TFAQAVTPEQA 115 Query: 121 LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVK 155 F L+ +GE LE RF LED+LI V R Sbjct: 116 AGFDAALAQLGETLEERFALEDELIAHVHTNKRDP 150 >UniRef50_Q2BL08 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Neptuniibacter caesariensis RepID=Q2BL08_9GAMM Length = 156 Score = 167 bits (423), Expect = 1e-40, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 8/154 (5%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML + N ER G ++++D WL R+ L+ + +L P LN K + FCQ Sbjct: 1 MLEKCKNAKERWGGVSEIIDSWLEERQALISQFVHL----PEHHINDELNTK-VQSFCQV 55 Query: 61 LVDYLSAGHFSIYERILHKLE--GNGQLARAAKIWPQLEANTQQIMDYYDSSLE-TAIDH 117 L+DYLS+GHF +YE++L + +G L I P+++ +T +D+ D Sbjct: 56 LMDYLSSGHFEVYEQLLREGSDFDDGSLEEGQSILPKIQISTDVALDFNDDFSNLLDPTV 115 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDA 151 EF + LS +GEALE RF LED++I ++ + Sbjct: 116 QQIREFSERLSKLGEALEERFELEDQMIAVLHTS 149 >UniRef50_A4SRT4 Regulator of SigmaD n=3 Tax=Aeromonas RepID=A4SRT4_AERS4 Length = 168 Score = 167 bits (422), Expect = 2e-40, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 5/151 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKA-LDDFCQ 59 ML +L+ + G ++ +D WL R+ LLV Y L G+ P + L + L FC Sbjct: 9 MLTELEKTKRALAGKHRAIDDWLDARQALLVEYMRLAGLTPARNKQRSLPSPSELQRFCD 68 Query: 60 SLVDYLSAGHFSIYERILHKLE--GNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 LVDY+SAGHF IY ++ E +L A +I+P + T+ +++ D D Sbjct: 69 QLVDYVSAGHFEIYNHVVAAFEQASGDKLELAKRIYPHIRECTEFALEFNDKYSNA--DE 126 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLV 148 L + L+ +G LE RF ED+L+ + Sbjct: 127 AQMLLLDEDLNQLGPVLEDRFKQEDRLVKAL 157 >UniRef50_C4LAY5 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LAY5_TOLAT Length = 168 Score = 163 bits (413), Expect = 1e-39, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 7/152 (4%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML LD + E+V G + +D WL VR+ LLV Y L G+ P + +++AL DFC Sbjct: 1 MLVTLDKIREQVAGKHPAIDAWLDVRRTLLVEYMQLAGLMPPYSKTLP-SKEALSDFCDR 59 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQ----LARAAKIWPQLEANTQQIMDYYDSSLETAID 116 LVDY+SAGHF IYE ++ E + L+ ++ +++ T+ I+D+ + + I Sbjct: 60 LVDYISAGHFEIYEILIDAYEKVQEKEHHLSLTNRLIDRIQDTTESILDFNERYGD--IS 117 Query: 117 HDNYLEFQQVLSDIGEALEARFVLEDKLILLV 148 D E + LS +G LE RF LEDKL+L++ Sbjct: 118 DDEMPELEADLSQLGLTLEERFKLEDKLVLVL 149 >UniRef50_Q1MYZ4 Regulator of sigma D n=2 Tax=Gammaproteobacteria RepID=Q1MYZ4_9GAMM Length = 158 Score = 158 bits (400), Expect = 6e-38, Method: Composition-based stats. Identities = 47/133 (35%), Positives = 77/133 (57%), Gaps = 3/133 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML + ER G + L+DRWL R+++LV Y+ + G+KP L+ K ++ FCQ Sbjct: 1 MLESTKDAQERWGGVHDLIDRWLSERQNMLVLYFAIRGLKPFSPRETPLSVK-VEAFCQV 59 Query: 61 LVDYLSAGHFSIYERILHKLE--GNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHD 118 L+DYLSAGHF IYE++L + + +G + A K +P+LE T++ +++ D + Sbjct: 60 LMDYLSAGHFEIYEKLLLEAQEYDDGGIDLARKHYPRLEQITERCVEFNDKYDNAEHCLE 119 Query: 119 NYLEFQQVLSDIG 131 + + LS+IG Sbjct: 120 QLSDLPKDLSEIG 132 >UniRef50_A0Y9W1 Regulator of sigma D n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y9W1_9GAMM Length = 154 Score = 158 bits (399), Expect = 6e-38, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 7/155 (4%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML+ + ER +KLV+RWL R+ ++V + L G+ + L +FCQ Sbjct: 1 MLDNC-TIEERWNAVDKLVERWLQERQLVIVQFCALSGVHEL-NQDDDPSSMRLQNFCQL 58 Query: 61 LVDYLSAGHFSIYERILHKLEG--NGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHD 118 LVDY+SAGHF +Y ++ + E +G + A + P++ T+ MD+ D Sbjct: 59 LVDYMSAGHFEVYYEVIREAEAFQDGSVNLAKGLMPEITLTTKISMDFNDLYTS---GKG 115 Query: 119 NYLEFQQVLSDIGEALEARFVLEDKLILLVLDAAR 153 + LS +GE L ARF LED+LI + ++ R Sbjct: 116 DLGHLSSSLSKLGENLAARFELEDQLINTMHESHR 150 >UniRef50_A6VTB7 Regulator of sigma D n=2 Tax=Marinomonas RepID=A6VTB7_MARMS Length = 156 Score = 153 bits (388), Expect = 1e-36, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 7/156 (4%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML ER G + ++DRWL R+ LL L + ++ + FC+ Sbjct: 1 MLEGCKTAQERWGGVHVIIDRWLEQRRQLLEMGIYLR----ERGELTPMDTPKIQLFCEQ 56 Query: 61 LVDYLSAGHFSIYERIL---HKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 LVDY+SAGHF++YE++ + +G + ++ P +++ T+ +++ D + Sbjct: 57 LVDYVSAGHFTVYEQLALEAKEFHDDGAVILLRELLPLIDSTTEVAIEFNDKYDTKEHCN 116 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAAR 153 L + + RF ED+LI + +A Sbjct: 117 AQLEALPFSLQALAIVMAERFQYEDQLIKELHEAHS 152 >UniRef50_C6CN76 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Dickeya zeae Ech1591 RepID=C6CN76_DICZE Length = 149 Score = 150 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 73/152 (48%), Positives = 93/152 (61%), Gaps = 6/152 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML QL LTE V G L+D+WL RKHLL+AYY+L+ I+ G+ + L FC Sbjct: 1 MLKQLQRLTEDVGGHYALIDQWLQARKHLLLAYYHLLSIQTGQT----PAAQTLGGFCHH 56 Query: 61 LVDYLSAGHFSIYERILHK--LEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHD 118 LVDYLS GHF +YER+L + + +L A+ L +NTQQIMD YDS L I+ Sbjct: 57 LVDYLSVGHFHVYERMLQESAMLNERKLTLASHFDMALRSNTQQIMDIYDSHLAFFIEPA 116 Query: 119 NYLEFQQVLSDIGEALEARFVLEDKLILLVLD 150 + L F+Q LS +GEAL RF LED LI L+ D Sbjct: 117 DSLAFRQALSGVGEALAMRFTLEDSLIRLMFD 148 >UniRef50_Q1QU59 Alginate regulatory protein AlgQ n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QU59_CHRSD Length = 169 Score = 135 bits (341), Expect = 3e-31, Method: Composition-based stats. Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 9/163 (5%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMR-LNEKALDDFCQ 59 ML ER G + L+DRWL R+ +LV LV ++ ++ + + ++ +D F + Sbjct: 1 MLEDTKTALERWGGVHTLIDRWLEQRRDMLV---TLVELQEACDAELETVTKERIDAFSE 57 Query: 60 SLVDYLSAGHFSIYERILHK---LEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAID 116 +L+DY+S GHF IY ++ + + LA A + +LE +TQ ++++ D+ T + Sbjct: 58 TLMDYISGGHFEIYPQLRDEAVAFDDQEALALADHLLARLEMSTQMVLEF-DNDYSTPVR 116 Query: 117 HDNYL-EFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA 158 +Y L + + L RF LED+LI + A H + Sbjct: 117 CQHYAARLPAWLERLTKGLTERFALEDQLIARLHAAHAPSHAS 159 >UniRef50_B7RZZ8 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RZZ8_9GAMM Length = 153 Score = 132 bits (331), Expect = 5e-30, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 6/147 (4%) Query: 9 TERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAG 68 ++ +L+ RWL R+ LL Y + G L+ + CQ LVDY+S+G Sbjct: 7 QQQFNAVEELLTRWLKERRELLGKYTEIAVGMDGMLDQEALDLRQ-RALCQQLVDYVSSG 65 Query: 69 HFSIYERILHKLE--GNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQV 126 HF +Y + + E +G AAK+ P + T+ IM Y + + + ++ Sbjct: 66 HFEVYLELFEEAESFADGSNVVAAKLMPAIVDTTEIIMAYEEKYTSQ---DSDKAKVKRD 122 Query: 127 LSDIGEALEARFVLEDKLILLVLDAAR 153 LS +GE LE+RF+LED+LI + ++ R Sbjct: 123 LSSLGEVLESRFLLEDRLIAGLHNSHR 149 >UniRef50_Q0VSZ1 Regulator of RNA polymerase sigma(70) n=2 Tax=Alcanivorax RepID=Q0VSZ1_ALCBS Length = 166 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 6/155 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKP----GKESYMRLNEKALDD 56 M + + + LV WL R+ L+V + G+K + + + Sbjct: 1 MASSTSAALAQWQRIEALVQAWLDERQQLIVLLCTMQGLKGLSAVQPNDNPQPIHRQVQR 60 Query: 57 FCQSLVDYLSAGHFSIYERILHKLE--GNGQLARAAKIWPQLEANTQQIMDYYDSSLETA 114 FCQ L+DY+SAG+F +Y ++++ +I +L+ +T + + + Sbjct: 61 FCQLLMDYISAGYFEVYRELVNEARHFQRDNPTLTRQILAKLDRSTDAALAFNEDFEHPD 120 Query: 115 IDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVL 149 + +S + E LE RF LED+LIL + Sbjct: 121 QCLAQRDVLPERISALMETLEERFALEDQLILSIH 155 >UniRef50_UPI0001698913 anti-RNA polymerase sigma 70 factor n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698913 Length = 150 Score = 128 bits (322), Expect = 5e-29, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 8/135 (5%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 M Q ER G+ +++ + R+ +LV + + G++P + E+ L +FCQ Sbjct: 21 MSTQQQATAERRTGTQGMINNLMEERRQMLVLFCQVAGLEPYARTESL--EQLLQNFCQV 78 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLAR-AAKIWPQLEANTQQIMDYYDSS--LETAIDH 117 LVDY + GHF ++ +I E Q+ A +I+P T+ + + D + A+ Sbjct: 79 LVDYTAFGHFEVFGKISDGTERRSQVLHVAEEIYPGFVEATETAVAFNDKYDISDHALSF 138 Query: 118 DNYLEFQQVLSDIGE 132 D + +S +GE Sbjct: 139 D---HLSEDMSLLGE 150 >UniRef50_Q5P4L9 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P4L9_AZOSE Length = 290 Score = 45.3 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 3/134 (2%) Query: 17 KLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERI 76 +L+ +HLL + +V + + L + LD L+D+L + +Y + Sbjct: 155 QLISALKEDHQHLLGIFTAIVAARNAG--NLSLAQTQLDRLRIGLMDHLLKENVRLYVYL 212 Query: 77 LHKLEGNG-QLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALE 135 H L+ + +++ + ++D+ D + + +F L IGEAL Sbjct: 213 EHFLKTDAVSHELMHGFRHEMDDIGRAVVDFLDRYRQIGTHPELAAQFGSDLDAIGEALA 272 Query: 136 ARFVLEDKLILLVL 149 R E++++ + Sbjct: 273 GRIRREEEILYPMY 286 >UniRef50_C4R0D0 Putative uncharacterized protein n=1 Tax=Pichia pastoris GS115 RepID=C4R0D0_PICPG Length = 640 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 9/107 (8%) Query: 24 HVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYL--SAGHFSIYERILHKLE 81 + R LL + L K + + + + + YL SAGHF +Y ++ Sbjct: 494 NERLKLLTSLAQLAAGKNFGDDFDPVQQFEILRLGTVGTFYLAKSAGHFKMYTKL----- 548 Query: 82 GNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLS 128 R IW T+ + D E + + F LS Sbjct: 549 --PAAVRVENIWASTVIVTESLTRKNDLWYEVCENKEELSTFIAYLS 593 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C9XTE1 Regulator of sigma D n=2 Tax=Cronobacter RepID=C... 204 7e-52 UniRef50_A4W5B8 Regulator of sigma D n=71 Tax=Enterobacteriaceae... 200 9e-51 UniRef50_B1KN90 Regulator of RpoD, Rsd/AlgQ n=4 Tax=Alteromonada... 198 5e-50 UniRef50_B8CTX7 Regulator of RNA polymerase sigma(70) subunit, R... 197 8e-50 UniRef50_Q1C1V0 Regulator of sigma D n=78 Tax=Enterobacteriaceae... 196 2e-49 UniRef50_Q7MGS1 Regulator of sigma D n=38 Tax=Vibrionaceae RepID... 191 5e-48 UniRef50_D0M5M9 Regulator of sigma D n=11 Tax=Vibrionaceae RepID... 185 5e-46 UniRef50_B3PGA7 Transcriptional regulator AlgQ n=4 Tax=Gammaprot... 185 5e-46 UniRef50_A1SZJ6 Regulator of RpoD, Rsd/AlgQ n=4 Tax=Alteromonada... 184 8e-46 UniRef50_B6ENC0 Regulator of RNA polymerase sigma (70) subunit n... 180 1e-44 UniRef50_B4S1E9 Stationary-phase regulator of sigma D, the major... 178 5e-44 UniRef50_P15275 Transcriptional regulatory protein algQ n=28 Tax... 178 6e-44 UniRef50_Q2NWR3 Regulator of sigma D n=1 Tax=Sodalis glossinidiu... 178 6e-44 UniRef50_Q21EN8 Regulator of RNA polymerase sigma(70) subunit, R... 176 2e-43 UniRef50_Q2BL08 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Neptuniibact... 176 2e-43 UniRef50_Q1ZHX9 Regulator of sigma D n=1 Tax=Psychromonas sp. CN... 174 6e-43 UniRef50_A0Y9W1 Regulator of sigma D n=1 Tax=marine gamma proteo... 173 2e-42 UniRef50_A6VTB7 Regulator of sigma D n=2 Tax=Marinomonas RepID=A... 172 2e-42 UniRef50_Q1MYZ4 Regulator of sigma D n=2 Tax=Gammaproteobacteria... 171 8e-42 UniRef50_A4SRT4 Regulator of SigmaD n=3 Tax=Aeromonas RepID=A4SR... 165 5e-40 UniRef50_C4LAY5 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Tolumonas au... 158 7e-38 UniRef50_Q0VSZ1 Regulator of RNA polymerase sigma(70) n=2 Tax=Al... 153 2e-36 UniRef50_Q1QU59 Alginate regulatory protein AlgQ n=1 Tax=Chromoh... 147 1e-34 UniRef50_B7RZZ8 Putative uncharacterized protein n=1 Tax=marine ... 144 7e-34 UniRef50_C6CN76 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Dickeya zeae... 142 4e-33 UniRef50_UPI0001698913 anti-RNA polymerase sigma 70 factor n=1 T... 127 1e-28 UniRef50_Q5P4L9 Putative uncharacterized protein n=1 Tax=Aromato... 124 8e-28 Sequences not found previously or not previously below threshold: UniRef50_C4KD85 Hemerythrin HHE cation binding domain protein n=... 66 4e-10 UniRef50_C7R6Q4 Putative uncharacterized protein n=1 Tax=Kangiel... 56 5e-07 UniRef50_B9L7E3 Putative hemerythrin HHE cation binding domain s... 43 0.003 UniRef50_Q1MY12 Putative uncharacterized protein n=1 Tax=Bermane... 41 0.010 >UniRef50_C9XTE1 Regulator of sigma D n=2 Tax=Cronobacter RepID=C9XTE1_CROTZ Length = 175 Score = 204 bits (520), Expect = 7e-52, Method: Composition-based stats. Identities = 103/151 (68%), Positives = 122/151 (80%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 MLNQL +LTERV GSN+LVDRWL R HLLV YY +VGIKPGKE L+E+ALD+FC Sbjct: 9 MLNQLKSLTERVGGSNELVDRWLGARNHLLVTYYKMVGIKPGKEPMTALDEQALDEFCHC 68 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY 120 LVDYLSAGHF+IYER++ ++EG L A +I+PQLE+NTQQIMD+YD+ LE+AIDHDN Sbjct: 69 LVDYLSAGHFNIYERVISEMEGTSPLVAATQIYPQLESNTQQIMDFYDTHLESAIDHDNC 128 Query: 121 LEFQQVLSDIGEALEARFVLEDKLILLVLDA 151 LEFQ+ LS IGEAL ARF LEDKLI+L D Sbjct: 129 LEFQEALSGIGEALAARFALEDKLIMLAYDN 159 >UniRef50_A4W5B8 Regulator of sigma D n=71 Tax=Enterobacteriaceae RepID=RSD_ENT38 Length = 165 Score = 200 bits (510), Expect = 9e-51, Method: Composition-based stats. Identities = 121/151 (80%), Positives = 132/151 (87%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 MLNQL++LTERV GSNKLVDRWLHVRK LLVAYYNLVGIKPGKESYMRLNEKALD+FCQS Sbjct: 1 MLNQLESLTERVGGSNKLVDRWLHVRKQLLVAYYNLVGIKPGKESYMRLNEKALDNFCQS 60 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY 120 LVDYLS GHF+IYERI+ ++EG A K++PQLEANTQQIMDYYDS+LE AID DNY Sbjct: 61 LVDYLSDGHFNIYERIIREMEGTNPYLAATKLYPQLEANTQQIMDYYDSTLENAIDQDNY 120 Query: 121 LEFQQVLSDIGEALEARFVLEDKLILLVLDA 151 LEFQQ LSD+GEALE RF LEDKLI L LD Sbjct: 121 LEFQQALSDLGEALEGRFTLEDKLIALALDN 151 >UniRef50_B1KN90 Regulator of RpoD, Rsd/AlgQ n=4 Tax=Alteromonadales RepID=B1KN90_SHEWM Length = 155 Score = 198 bits (504), Expect = 5e-50, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 83/156 (53%), Gaps = 4/156 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKAL-DDFCQ 59 ML QL+ +R G+N L+D WL+ R+ LL+ Y + GI P + L L +FC Sbjct: 1 MLKQLEKAEQRWGGANTLIDHWLNNRRKLLINYCKIAGIPPYDSTEKSLPAITLVKEFCD 60 Query: 60 SLVDYLSAGHFSIYERILHKLEGNG--QLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY+S GHF +Y++++ E NG A K+ P++ T +D+ D E +D Sbjct: 61 QLMDYVSEGHFEVYDQVVTACEKNGVSSKELAQKLVPRISETTDSALDFNDKYTEL-VDD 119 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAAR 153 + + LS +G A+E RF LEDKL+ ++ Sbjct: 120 KVLFQLDKDLSSLGHAMETRFELEDKLLEVLHTKHS 155 >UniRef50_B8CTX7 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ n=20 Tax=Shewanella RepID=B8CTX7_SHEPW Length = 176 Score = 197 bits (502), Expect = 8e-50, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 4/156 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNE-KALDDFCQ 59 ML +L+ ++ GSN L+D+WL+ R++LL+ Y + GI P + + L ++ FC Sbjct: 22 MLRKLEKAEQKWGGSNTLIDQWLNNRRNLLINYCQIAGIPPYEITENTLPAFDSVKAFCD 81 Query: 60 SLVDYLSAGHFSIYERILHKLEGNGQL--ARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY+S GHF IY +++ E NG A ++ PQ+ T +D+ D E A D Sbjct: 82 QLMDYVSEGHFEIYNQVVTACEKNGSSSQELAQQLVPQISETTDTALDFNDKYTE-AEDE 140 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAAR 153 + LS +G A+E RF LEDKL+ ++ Sbjct: 141 KVLFHLDKDLSSLGHAMETRFALEDKLLEVLHTKHS 176 >UniRef50_Q1C1V0 Regulator of sigma D n=78 Tax=Enterobacteriaceae RepID=RSD_YERPA Length = 169 Score = 196 bits (498), Expect = 2e-49, Method: Composition-based stats. Identities = 82/153 (53%), Positives = 112/153 (73%), Gaps = 2/153 (1%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 MLN+L++LT+RV GSN+L+D+WLH RK LLV+Y ++GIKP KE + LN K L++FC + Sbjct: 1 MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHN 60 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQ--LARAAKIWPQLEANTQQIMDYYDSSLETAIDHD 118 LVDYLS+GHF +Y+RI+ ++EG +A AKI P L+ NTQ IM ++D ID D Sbjct: 61 LVDYLSSGHFHLYDRIIKEVEGASSPKMALTAKIHPALKNNTQTIMAFHDCYTNIEIDDD 120 Query: 119 NYLEFQQVLSDIGEALEARFVLEDKLILLVLDA 151 + E+QQ LSDIGEAL+ARF LED+LI ++ Sbjct: 121 SCTEYQQALSDIGEALDARFRLEDQLIQWAAES 153 >UniRef50_Q7MGS1 Regulator of sigma D n=38 Tax=Vibrionaceae RepID=Q7MGS1_VIBVY Length = 164 Score = 191 bits (486), Expect = 5e-48, Method: Composition-based stats. Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 6/163 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESY---MRLNEKALDDF 57 ML + E+ GS++++D WL R+ L+V Y L ++P + L F Sbjct: 3 MLKKFKQTQEQWGGSSEVIDHWLETRQSLIVEYCKLAALQPCSTKSNVLELPSPHELQQF 62 Query: 58 CQSLVDYLSAGHFSIYERILHKLEGNG--QLARAAKIWPQLEANTQQIMDYYDSSLETAI 115 CQ LVDY+S GHF IY+ ++ K G + + ++ T+ ++ + D Sbjct: 63 CQHLVDYISEGHFKIYDMVMDKWRATGFEATTEINETYAKIVLTTEPLLSFTDMYASVG- 121 Query: 116 DHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA 158 + D F+ LS +GE +E RF +ED LI L+ D+ V A Sbjct: 122 EDDPLESFEPDLSKVGEIIELRFEVEDHLIQLIADSLSVPPGA 164 >UniRef50_D0M5M9 Regulator of sigma D n=11 Tax=Vibrionaceae RepID=D0M5M9_VIBSE Length = 161 Score = 185 bits (469), Expect = 5e-46, Method: Composition-based stats. Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 5/162 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESY--MRLNEKALDDFC 58 ML + ++ GS+ ++D WL R+ L+V Y L ++P ++ + L DFC Sbjct: 1 MLKKFKQTQDQWGGSSDVIDHWLETRQSLIVEYCKLAALQPCSKTNVIELPSPSELQDFC 60 Query: 59 QSLVDYLSAGHFSIYERILHKLEGNGQLA--RAAKIWPQLEANTQQIMDYYDSSLETAID 116 Q LVDY+S GHF IY+ ++ + + G + + + Q+ T+ ++++ D E + Sbjct: 61 QHLVDYISEGHFKIYDMVMDRWKATGFVVTNEINQTYGQIVLTTEPLLNFNDKYSEV-TE 119 Query: 117 HDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA 158 D +F + IGE LE RF +ED LI + ++ + A Sbjct: 120 DDELDDFDSDMCLIGEILETRFEVEDYLIQQIAESLSMPPGA 161 >UniRef50_B3PGA7 Transcriptional regulator AlgQ n=4 Tax=Gammaproteobacteria RepID=B3PGA7_CELJU Length = 155 Score = 185 bits (469), Expect = 5e-46, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 8/157 (5%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML + ER G ++++DRWL R+ +LV Y +L ++ ++ L L + CQ Sbjct: 1 MLENCKSAKERWGGVSEIIDRWLEERQQMLVQYCDLSALE-ATDANEALRGHKLRELCQI 59 Query: 61 LVDYLSAGHFSIYERIL---HKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 LVDY+SAGHF IY++++ + E L A K++ ++ T+ ++D+ D LET Sbjct: 60 LVDYVSAGHFEIYDQLIKEGREFEDEEALQEAGKLYAVVDETTETLLDFNDKYLET---- 115 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARV 154 D+ LS +GE+LE RF ED++I ++ + + Sbjct: 116 DDLGSLSDDLSRLGESLETRFSAEDRMISVLHTSHKD 152 >UniRef50_A1SZJ6 Regulator of RpoD, Rsd/AlgQ n=4 Tax=Alteromonadales RepID=A1SZJ6_PSYIN Length = 157 Score = 184 bits (468), Expect = 8e-46, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 4/157 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLN-EKALDDFCQ 59 ML +L+ E G ++D WL R+ L+V Y L G+ P +E+ L ++ + FCQ Sbjct: 1 MLTKLERAKEEWGGRLSVIDNWLEERQTLVVVYCKLAGLPPYQETNHSLPAQEKITHFCQ 60 Query: 60 SLVDYLSAGHFSIYERIL--HKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY S GHF IYE+I+ KL+G L A +++ ++ T + + D E+A + Sbjct: 61 LLLDYASTGHFEIYEQIITQCKLDGENNLKIAQELYSRITTTTDAALSFNDKYAESANE- 119 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARV 154 ++F + LS++G+ +E RF ED+L+ +V + Sbjct: 120 QALVDFDRDLSNLGQLMEERFEREDQLLEVVHLHHTL 156 >UniRef50_B6ENC0 Regulator of RNA polymerase sigma (70) subunit n=10 Tax=Vibrionales RepID=B6ENC0_ALISL Length = 169 Score = 180 bits (458), Expect = 1e-44, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 4/161 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPG-KESYMRLNEKALDDFCQ 59 ML +L+ E G+++++D WL R+ LLV Y L G+ P + + ++ F Q Sbjct: 10 MLTKLNQFQEEWGGNSEVIDHWLSTRQDLLVEYCKLAGLPPFDSSNSSLPSFSSIQLFTQ 69 Query: 60 SLVDYLSAGHFSIYERILHKLEGNG--QLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY+S GHF IY ++ K + G ++++ ++ T ++++ D + Sbjct: 70 HLIDYISEGHFKIYNMVMAKWDSTGFSPTEEMSQLYAKITKTTDPMLNFTDKY-SQENED 128 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA 158 +F + S +GE + RF LED LI + + A Sbjct: 129 LLLSDFDKDFSILGETIGERFELEDGLIEQIATSLNHPPGA 169 >UniRef50_B4S1E9 Stationary-phase regulator of sigma D, the major sigma subunit of RNA polymerase n=2 Tax=Alteromonas macleodii RepID=B4S1E9_ALTMD Length = 154 Score = 178 bits (452), Expect = 5e-44, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 5/155 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML QL+++ R G +++VDRWL R+ LLV++ L GI K+S + + +FC + Sbjct: 1 MLQQLESVKSRWGGKSQVVDRWLMDRQALLVSFCELAGIN--KQSESLPDADEIANFCSA 58 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY 120 L+DYLSAGHF +++ ++ + + L K++P+L T + + D+ + A+ + Sbjct: 59 LLDYLSAGHFEVFDILVE--DDDEGLDLKDKLYPKLTKTTDAALAFNDTFAQ-AVTPEQA 115 Query: 121 LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVK 155 F L+ +GE LE RF LED+LI V R Sbjct: 116 AGFDAALAQLGETLEERFALEDELIAHVHTNKRDP 150 >UniRef50_P15275 Transcriptional regulatory protein algQ n=28 Tax=cellular organisms RepID=ALGQ_PSEAE Length = 160 Score = 178 bits (451), Expect = 6e-44, Method: Composition-based stats. Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 10/156 (6%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML N ER G ++L+DRWLH R+ L+ A+ L GI+ N + L FCQ Sbjct: 1 MLESCRNAQERWGGVHQLIDRWLHERQQLVQAFDALSGIQAP-----APNAEELQHFCQL 55 Query: 61 LVDYLSAGHFSIYERILHKLE---GNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 L+DY+SAGHF +YE++ + + L A +I+P+LEA T+ +++ D Sbjct: 56 LLDYVSAGHFEVYEQLTAEGKAFGDQRGLELAKQIFPRLEAITESALNFNDRCDNGDCRE 115 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAAR 153 L L + + L RF LED LI ++ +A Sbjct: 116 GACLI--AELKVLRQQLHERFELEDCLIEVLHNAHS 149 >UniRef50_Q2NWR3 Regulator of sigma D n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=RSD_SODGM Length = 145 Score = 178 bits (451), Expect = 6e-44, Method: Composition-based stats. Identities = 86/150 (57%), Positives = 109/150 (72%), Gaps = 5/150 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 MLNQL+NL + V G+N+L+D+WL RK LLVAYY+L+G+KP KE + L+E+ALD FC Sbjct: 1 MLNQLENLAKCVGGNNELIDQWLQARKGLLVAYYHLIGLKPNKEKHTPLDEEALDAFCHQ 60 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY 120 LVDYLSAGHF +Y+ I+ + E + L + L+ NTQQIM YDS LE AIDHDNY Sbjct: 61 LVDYLSAGHFLVYDSIVPEGESSSTLT-----YSGLQENTQQIMALYDSHLENAIDHDNY 115 Query: 121 LEFQQVLSDIGEALEARFVLEDKLILLVLD 150 L FQ+ LS +GEAL RFVLEDKLI ++ Sbjct: 116 LSFQEALSGVGEALATRFVLEDKLIQQAME 145 >UniRef50_Q21EN8 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ n=2 Tax=Gammaproteobacteria RepID=Q21EN8_SACD2 Length = 154 Score = 176 bits (446), Expect = 2e-43, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 9/157 (5%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML + ER G ++++DRWL R+ +LV Y NL I + R + C+ Sbjct: 1 MLEDCKSAQERWGGVSEIIDRWLQERQQMLVLYCNLSEICDLPDHPERAA--QVKTLCEI 58 Query: 61 LVDYLSAGHFSIYERILH---KLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 +VDY+SAGHF IY ++L + E L +A +++ ++++T+ +D+ D LET Sbjct: 59 VVDYVSAGHFEIYNQLLQEGEEFEDQEGLKQAGELFKIIDSSTEVALDFNDKYLET---- 114 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARV 154 D+ Q LS +GE+L +RF EDK+I ++ + + Sbjct: 115 DDLETINQDLSHLGESLVSRFEAEDKMIEVLHVSHKD 151 >UniRef50_Q2BL08 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Neptuniibacter caesariensis RepID=Q2BL08_9GAMM Length = 156 Score = 176 bits (446), Expect = 2e-43, Method: Composition-based stats. Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 8/156 (5%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML + N ER G ++++D WL R+ L+ + +L P LN K + FCQ Sbjct: 1 MLEKCKNAKERWGGVSEIIDSWLEERQALISQFVHL----PEHHINDELNTK-VQSFCQV 55 Query: 61 LVDYLSAGHFSIYERILHKLE--GNGQLARAAKIWPQLEANTQQIMDYYDSSLE-TAIDH 117 L+DYLS+GHF +YE++L + +G L I P+++ +T +D+ D Sbjct: 56 LMDYLSSGHFEVYEQLLREGSDFDDGSLEEGQSILPKIQISTDVALDFNDDFSNLLDPTV 115 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAAR 153 EF + LS +GEALE RF LED++I ++ + + Sbjct: 116 QQIREFSERLSKLGEALEERFELEDQMIAVLHTSHK 151 >UniRef50_Q1ZHX9 Regulator of sigma D n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZHX9_9GAMM Length = 157 Score = 174 bits (442), Expect = 6e-43, Method: Composition-based stats. Identities = 49/152 (32%), Positives = 86/152 (56%), Gaps = 4/152 (2%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLN-EKALDDFCQ 59 ML ++ + G+ ++D WL R+ L+V Y LVG ++ L +K + +FCQ Sbjct: 1 MLRNIEKVKAEWGGTLNVIDGWLANRQQLVVLYCKLVGTSTEQQKKQELPSQKEITNFCQ 60 Query: 60 SLVDYLSAGHFSIYERIL--HKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 +L+DY S GHF IYE+I+ KL+G L A +++ ++ T +++ D E A + Sbjct: 61 TLLDYTSTGHFGIYEQIILQCKLDGEQNLKIAQELYSRITTTTDTALNFNDKYAENATEI 120 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVL 149 L+F LS++G+ +E RF ED+L+ +++ Sbjct: 121 A-LLDFDDDLSELGQKMEERFEREDQLLEVLM 151 >UniRef50_A0Y9W1 Regulator of sigma D n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0Y9W1_9GAMM Length = 154 Score = 173 bits (438), Expect = 2e-42, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 7/155 (4%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML+ + ER +KLV+RWL R+ ++V + L G+ + L +FCQ Sbjct: 1 MLDNC-TIEERWNAVDKLVERWLQERQLVIVQFCALSGVHEL-NQDDDPSSMRLQNFCQL 58 Query: 61 LVDYLSAGHFSIYERILHKLEG--NGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHD 118 LVDY+SAGHF +Y ++ + E +G + A + P++ T+ MD+ D Sbjct: 59 LVDYMSAGHFEVYYEVIREAEAFQDGSVNLAKGLMPEITLTTKISMDFNDLYTS---GKG 115 Query: 119 NYLEFQQVLSDIGEALEARFVLEDKLILLVLDAAR 153 + LS +GE L ARF LED+LI + ++ R Sbjct: 116 DLGHLSSSLSKLGENLAARFELEDQLINTMHESHR 150 >UniRef50_A6VTB7 Regulator of sigma D n=2 Tax=Marinomonas RepID=A6VTB7_MARMS Length = 156 Score = 172 bits (437), Expect = 2e-42, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 7/158 (4%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML ER G + ++DRWL R+ LL L + ++ + FC+ Sbjct: 1 MLEGCKTAQERWGGVHVIIDRWLEQRRQLLEMGIYLR----ERGELTPMDTPKIQLFCEQ 56 Query: 61 LVDYLSAGHFSIYERIL---HKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 LVDY+SAGHF++YE++ + +G + ++ P +++ T+ +++ D + Sbjct: 57 LVDYVSAGHFTVYEQLALEAKEFHDDGAVILLRELLPLIDSTTEVAIEFNDKYDTKEHCN 116 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVK 155 L + + RF ED+LI + +A K Sbjct: 117 AQLEALPFSLQALAIVMAERFQYEDQLIKELHEAHSEK 154 >UniRef50_Q1MYZ4 Regulator of sigma D n=2 Tax=Gammaproteobacteria RepID=Q1MYZ4_9GAMM Length = 158 Score = 171 bits (433), Expect = 8e-42, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 91/159 (57%), Gaps = 3/159 (1%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML + ER G + L+DRWL R+++LV Y+ + G+KP L+ K ++ FCQ Sbjct: 1 MLESTKDAQERWGGVHDLIDRWLSERQNMLVLYFAIRGLKPFSPRETPLSVK-VEAFCQV 59 Query: 61 LVDYLSAGHFSIYERILHKLE--GNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHD 118 L+DYLSAGHF IYE++L + + +G + A K +P+LE T++ +++ D + Sbjct: 60 LMDYLSAGHFEIYEKLLLEAQEYDDGGIDLARKHYPRLEQITERCVEFNDKYDNAEHCLE 119 Query: 119 NYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHP 157 + + LS+IGE LE RF LED+LI + + + Sbjct: 120 QLSDLPKDLSEIGELLEERFELEDELIENLHNVHKQTPA 158 >UniRef50_A4SRT4 Regulator of SigmaD n=3 Tax=Aeromonas RepID=A4SRT4_AERS4 Length = 168 Score = 165 bits (417), Expect = 5e-40, Method: Composition-based stats. Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 5/151 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEK-ALDDFCQ 59 ML +L+ + G ++ +D WL R+ LLV Y L G+ P + L L FC Sbjct: 9 MLTELEKTKRALAGKHRAIDDWLDARQALLVEYMRLAGLTPARNKQRSLPSPSELQRFCD 68 Query: 60 SLVDYLSAGHFSIYERILHKLE--GNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDH 117 LVDY+SAGHF IY ++ E +L A +I+P + T+ +++ D D Sbjct: 69 QLVDYVSAGHFEIYNHVVAAFEQASGDKLELAKRIYPHIRECTEFALEFNDKYSNA--DE 126 Query: 118 DNYLEFQQVLSDIGEALEARFVLEDKLILLV 148 L + L+ +G LE RF ED+L+ + Sbjct: 127 AQMLLLDEDLNQLGPVLEDRFKQEDRLVKAL 157 >UniRef50_C4LAY5 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LAY5_TOLAT Length = 168 Score = 158 bits (399), Expect = 7e-38, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 85/152 (55%), Gaps = 7/152 (4%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML LD + E+V G + +D WL VR+ LLV Y L G+ P +++AL DFC Sbjct: 1 MLVTLDKIREQVAGKHPAIDAWLDVRRTLLVEYMQLAGLMPPYSK-TLPSKEALSDFCDR 59 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQ----LARAAKIWPQLEANTQQIMDYYDSSLETAID 116 LVDY+SAGHF IYE ++ E + L+ ++ +++ T+ I+D+ + I Sbjct: 60 LVDYISAGHFEIYEILIDAYEKVQEKEHHLSLTNRLIDRIQDTTESILDFNERY--GDIS 117 Query: 117 HDNYLEFQQVLSDIGEALEARFVLEDKLILLV 148 D E + LS +G LE RF LEDKL+L++ Sbjct: 118 DDEMPELEADLSQLGLTLEERFKLEDKLVLVL 149 >UniRef50_Q0VSZ1 Regulator of RNA polymerase sigma(70) n=2 Tax=Alcanivorax RepID=Q0VSZ1_ALCBS Length = 166 Score = 153 bits (386), Expect = 2e-36, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 6/156 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKP----GKESYMRLNEKALDD 56 M + + + LV WL R+ L+V + G+K + + + Sbjct: 1 MASSTSAALAQWQRIEALVQAWLDERQQLIVLLCTMQGLKGLSAVQPNDNPQPIHRQVQR 60 Query: 57 FCQSLVDYLSAGHFSIYERILHKLE--GNGQLARAAKIWPQLEANTQQIMDYYDSSLETA 114 FCQ L+DY+SAG+F +Y ++++ +I +L+ +T + + + Sbjct: 61 FCQLLMDYISAGYFEVYRELVNEARHFQRDNPTLTRQILAKLDRSTDAALAFNEDFEHPD 120 Query: 115 IDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLD 150 + +S + E LE RF LED+LIL + Sbjct: 121 QCLAQRDVLPERISALMETLEERFALEDQLILSIHQ 156 >UniRef50_Q1QU59 Alginate regulatory protein AlgQ n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QU59_CHRSD Length = 169 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 7/162 (4%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMR-LNEKALDDFCQ 59 ML ER G + L+DRWL R+ +LV LV ++ ++ + + ++ +D F + Sbjct: 1 MLEDTKTALERWGGVHTLIDRWLEQRRDMLV---TLVELQEACDAELETVTKERIDAFSE 57 Query: 60 SLVDYLSAGHFSIYERILHK---LEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAID 116 +L+DY+S GHF IY ++ + + LA A + +LE +TQ ++++ + Sbjct: 58 TLMDYISGGHFEIYPQLRDEAVAFDDQEALALADHLLARLEMSTQMVLEFDNDYSTPVRC 117 Query: 117 HDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA 158 L + + L RF LED+LI + A H + Sbjct: 118 QHYAARLPAWLERLTKGLTERFALEDQLIARLHAAHAPSHAS 159 >UniRef50_B7RZZ8 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RZZ8_9GAMM Length = 153 Score = 144 bits (364), Expect = 7e-34, Method: Composition-based stats. Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 6/147 (4%) Query: 9 TERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAG 68 ++ +L+ RWL R+ LL Y + G L+ + CQ LVDY+S+G Sbjct: 7 QQQFNAVEELLTRWLKERRELLGKYTEIAVGMDGMLDQEALDLRQ-RALCQQLVDYVSSG 65 Query: 69 HFSIYERILHKLE--GNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQV 126 HF +Y + + E +G AAK+ P + T+ IM Y + + + ++ Sbjct: 66 HFEVYLELFEEAESFADGSNVVAAKLMPAIVDTTEIIMAYEEKYTSQ---DSDKAKVKRD 122 Query: 127 LSDIGEALEARFVLEDKLILLVLDAAR 153 LS +GE LE+RF+LED+LI + ++ R Sbjct: 123 LSSLGEVLESRFLLEDRLIAGLHNSHR 149 >UniRef50_C6CN76 Regulator of RpoD, Rsd/AlgQ n=1 Tax=Dickeya zeae Ech1591 RepID=C6CN76_DICZE Length = 149 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 73/152 (48%), Positives = 93/152 (61%), Gaps = 6/152 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 ML QL LTE V G L+D+WL RKHLL+AYY+L+ I+ G+ + L FC Sbjct: 1 MLKQLQRLTEDVGGHYALIDQWLQARKHLLLAYYHLLSIQTGQT----PAAQTLGGFCHH 56 Query: 61 LVDYLSAGHFSIYERILHK--LEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHD 118 LVDYLS GHF +YER+L + + +L A+ L +NTQQIMD YDS L I+ Sbjct: 57 LVDYLSVGHFHVYERMLQESAMLNERKLTLASHFDMALRSNTQQIMDIYDSHLAFFIEPA 116 Query: 119 NYLEFQQVLSDIGEALEARFVLEDKLILLVLD 150 + L F+Q LS +GEAL RF LED LI L+ D Sbjct: 117 DSLAFRQALSGVGEALAMRFTLEDSLIRLMFD 148 >UniRef50_UPI0001698913 anti-RNA polymerase sigma 70 factor n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698913 Length = 150 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 4/133 (3%) Query: 1 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS 60 M Q ER G+ +++ + R+ +LV + + G++P + E+ L +FCQ Sbjct: 21 MSTQQQATAERRTGTQGMINNLMEERRQMLVLFCQVAGLEPYARTESL--EQLLQNFCQV 78 Query: 61 LVDYLSAGHFSIYERILHKLEGNGQLAR-AAKIWPQLEANTQQIMDYYDSSLETAIDHDN 119 LVDY + GHF ++ +I E Q+ A +I+P T+ + + D + Sbjct: 79 LVDYTAFGHFEVFGKISDGTERRSQVLHVAEEIYPGFVEATETAVAFNDKYDISDHALS- 137 Query: 120 YLEFQQVLSDIGE 132 + + +S +GE Sbjct: 138 FDHLSEDMSLLGE 150 >UniRef50_Q5P4L9 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P4L9_AZOSE Length = 290 Score = 124 bits (312), Expect = 8e-28, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 3/134 (2%) Query: 17 KLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERI 76 +L+ +HLL + +V + + L + LD L+D+L + +Y + Sbjct: 155 QLISALKEDHQHLLGIFTAIVAARNAG--NLSLAQTQLDRLRIGLMDHLLKENVRLYVYL 212 Query: 77 LHKLEGNG-QLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALE 135 H L+ + +++ + ++D+ D + + +F L IGEAL Sbjct: 213 EHFLKTDAVSHELMHGFRHEMDDIGRAVVDFLDRYRQIGTHPELAAQFGSDLDAIGEALA 272 Query: 136 ARFVLEDKLILLVL 149 R E++++ + Sbjct: 273 GRIRREEEILYPMY 286 >UniRef50_C4KD85 Hemerythrin HHE cation binding domain protein n=1 Tax=Thauera sp. MZ1T RepID=C4KD85_THASP Length = 185 Score = 66.1 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 46/134 (34%), Gaps = 3/134 (2%) Query: 17 KLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERI 76 +LV+R + + +L + + + L+ F L +L + +Y + Sbjct: 50 ELVERLVRDHRLMLERFGAIREAAHAGRFDEVVP--LLERFRVDLHAHLLVENVRLYVYL 107 Query: 77 LHKLEGNG-QLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALE 135 H L + A + ++ ++++ + + D F L +G L Sbjct: 108 EHTLADDPVSHALMHEFRHDMDEIGKKVIAFLARYVRLGEDPALAASFAADLERVGAVLV 167 Query: 136 ARFVLEDKLILLVL 149 R E+ + + Sbjct: 168 DRIQREEDTLYPLY 181 >UniRef50_C7R6Q4 Putative uncharacterized protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R6Q4_KANKD Length = 178 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 47/134 (35%), Gaps = 2/134 (1%) Query: 18 LVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERIL 77 L+D HL+ Y + + + + + + F + +L + Y + Sbjct: 44 LIDNLKGDHNHLVGLYGRIWS-EGFEANDRQKTADLVTQFKRDFQAHLLKENVKFYVYLE 102 Query: 78 HKLEGN-GQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEA 136 KL + + ++ Q ++ + + + I + F++ +G+ L Sbjct: 103 QKLSDDSSSMDLVKDFRSEMNDIAQAVIRFCKTYSKPIITAEQKQSFEKDFETVGKVLTH 162 Query: 137 RFVLEDKLILLVLD 150 R LE+ + + Sbjct: 163 RVSLEENELYTLYQ 176 >UniRef50_B9L7E3 Putative hemerythrin HHE cation binding domain subfamily n=1 Tax=Nautilia profundicola AmH RepID=B9L7E3_NAUPA Length = 150 Score = 43.3 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 56/146 (38%), Gaps = 5/146 (3%) Query: 5 LDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDY 64 L L + +KL+ H + L + + K ++ + L F + Sbjct: 8 LKKLKKFYSFEDKLISELKHDHQKLFSLFNKIE--KNIQKRNYEKIPEILKKFHYEYRLH 65 Query: 65 LSAGHFSIYERILHKLEGNGQ-LARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEF 123 + Y + K + + + L + ++++ T+ I D+ + I +F Sbjct: 66 IIYEDNYFYTYMKRKYKNDDKILEFINQKQEEMKSITKAIADFINRFDS--IKEIQTEKF 123 Query: 124 QQVLSDIGEALEARFVLEDKLILLVL 149 + L +G+AL++R E+K + + Sbjct: 124 KNELQKLGKALKSRVEFEEKELYTLY 149 >UniRef50_Q1MY12 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MY12_9GAMM Length = 181 Score = 41.4 bits (96), Expect = 0.010, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 42/125 (33%) Query: 25 VRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNG 84 R+H + ++ + L K L DF L +L +Y+ + + + Sbjct: 41 EREHEEILNCLVLCRQACLSGRYSLVPKFLADFRSILFSHLIKERTILYQELKSHISDDD 100 Query: 85 QLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKL 144 L ++E + + E F + L+ IG+AL RF E Sbjct: 101 TLKSIRAFKHEMELFQGDLTSFILKWREEETVKSKTASFLKELNRIGKALVFRFAKEKDT 160 Query: 145 ILLVL 149 I + Sbjct: 161 IHSMH 165 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.151 0.458 Lambda K H 0.267 0.0461 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,001,104,607 Number of Sequences: 3077464 Number of extensions: 37802272 Number of successful extensions: 122281 Number of sequences better than 1.0e-01: 33 Number of HSP's better than 0.1 without gapping: 72 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 122038 Number of HSP's gapped (non-prelim): 89 length of query: 158 length of database: 1,040,396,356 effective HSP length: 118 effective length of query: 40 effective length of database: 677,255,604 effective search space: 27090224160 effective search space used: 27090224160 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 88 (38.3 bits)