Reference sequence (query): batch____ Identities normalised by aligned length. Colored by: property
HSP processing: ranked Search cycle: 3
1 [ . . . . : . . . . 1 . . . . : ] 158
batch____ bits E-value N 100.0% 1:158 MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
1 UniRef50_C9XTE1 Regulator of sigma D n=2 Ta... 193 2e-48 1 68.2% 1:151 9:159 MLNQLKSLTERVGGSNELVDRWLGARNHLLVTYYKMVGIKPGKEPMTALDEQALDEFCHCLVDYLSAGHFNIYERVISEMEGTSPLVAATQIYPQLESNTQQIMDFYDTHLESAIDHDNCLEFQEALSGIGEALAARFALEDKLIMLAYDN-------
2 UniRef50_A4W5B8 Regulator of sigma D n=71 T... 183 2e-45 1 80.1% 1:151 1:151 MLNQLESLTERVGGSNKLVDRWLHVRKQLLVAYYNLVGIKPGKESYMRLNEKALDNFCQSLVDYLSDGHFNIYERIIREMEGTNPYLAATKLYPQLEANTQQIMDYYDSTLENAIDQDNYLEFQQALSDLGEALEGRFTLEDKLIALALDN-------
3 UniRef50_B8CTX7 Regulator of RNA polymerase... 183 2e-45 1 33.3% 1:153 22:176 MLRKLEKAEQKWGGSNTLIDQWLNNRRNLLINYCQIAGIPPYetENTLPAFDSVKAFCDQLMDYVSEGHFEIYNQVVTACEKNGSseLAQQLVPQISETTDTALDFNDKYTEAE-DEKVLFHLDKDLSSLGHAMETRFALEDKLLEVLHTKHS-----
4 UniRef50_Q1C1V0 Regulator of sigma D n=78 T... 182 3e-45 1 54.3% 1:151 1:153 MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLNAKTLENFCHNLVDYLSSGHFHLYDRIIKEVEGASsmALTAKIHPALKNNTQTIMAFHDCYTNIEIDDDSCTEYQQALSDIGEALDARFRLEDQLIQWAAES-------
5 UniRef50_Q7MGS1 Regulator of sigma D n=38 T... 182 4e-45 1 30.4% 1:158 3:164 MLKKFKQTQEQWGGSSEVIDHWLETRQSLIVEYCKLAALQPCSTKseLPSPHELQQFCQHLVDYISEGHFKIYDMVMDKWRATgaTTEINETYAKIVLTTEPLLSFTDMYASVG-EDDPLESFEPDLSKVGEIIELRFEVEDHLIQLIADSLSVPPGA
6 UniRef50_B1KN90 Regulator of RpoD, Rsd/AlgQ... 180 2e-44 1 33.3% 1:153 1:155 MLKQLEKAEQRWGGANTLIDHWLNNRRKLLINYCKIAGIPPYDSTEKSLPatLVKEFCDQLMDYVSEGHFEVYDQVVTACEKNgsKELAQKLVPRISETTDSALDFNDKYTEL-VDDKVLFQLDKDLSSLGHAMETRFELEDKLLEVLHTKHS-----
7 UniRef50_D0M5M9 Regulator of sigma D n=11 T... 177 1e-43 1 29.7% 1:158 1:161 MLKKFKQTQDQWGGSSDVIDHWLETRQSLIVEYCKLAALQPCSKTneLPSPSELQDFCQHLVDYISEGHFKIYDMVMDRWKATGFVveINQTYGQIVLTTEPLLNFNDKYSEV-TEDDELDDFDSDMCLIGEILETRFEVEDYLIQQIAESLSMPPGA
8 UniRef50_A1SZJ6 Regulator of RpoD, Rsd/AlgQ... 171 5e-42 1 33.3% 1:153 1:155 MLTKLERAKEEWGGRLSVIDNWLEERQTLVVVYCKLAGLPPYQETNHSLPAQeiTHFCQLLLDYASTGHFEIYEQIicKLDGENNLKIAQELYSRITTTTDAALSFNDKYAESANEQA-LVDFDRDLSNLGQLMEERFEREDQLLEVVHLHHT-----
9 UniRef50_P15275 Transcriptional regulatory ... 170 9e-42 1 33.5% 1:155 1:151 MLESCRNAQERWGGVHQLIDRWLHERQQLVQAFDALSGIQAP-----APNAEELQHFCQLLLDYVSAGHFEVYEQLTAEGkdQRGLELAKQIFPRLEAITESALNFNDRCDNGDCREGAC--LIAELKVLRQQLHERFELEDCLIEVLHNAHSQS---
10 UniRef50_B3PGA7 Transcriptional regulator A... 169 2e-41 1 33.1% 1:154 1:152 MLENCKSAKERWGGVSEIIDRWLEERQQMLVQYCDLSALE-ATDANEALRGHKLRELCQILVDYVSAGHFEIYDQLirEFEDEEALQEAGKLYAVVDETTETLLDFNDKYLET----DDLGSLSDDLSRLGESLETRFSAEDRMISVLHTSHKD----
11 UniRef50_B6ENC0 Regulator of RNA polymerase... 168 6e-41 1 26.6% 1:158 10:169 MLTKLNQFQEEWGGNSEVIDHWLSTRQDLLVEYCKLAGLPPFdsNSSLPSFSSIQLFTQHLIDYISEGHFKIYNMVMAKWDSTgpTEEMSQLYAKITKTTDPMLNFTDKYSQ-ENEDLLLSDFDKDFSILGETIGERFELEDGLIEQIATSLNHPPGA
12 UniRef50_B4S1E9 Stationary-phase regulator ... 168 7e-41 1 34.2% 1:155 1:150 MLQQLESVKSRWGGKSQVVDRWLMDRQALLVSFCELAGIN--KQSESLPDADEIANFCSALLDYLSAGHFEVFDILVE--DDDEGLDLKDKLYPKLTKTTDAALAFNDTFAQ-AVTPEQAAGFDAALAQLGETLEERFALEDELIAHVHTNKRDP---
13 UniRef50_Q2NWR3 Regulator of sigma D n=1 Ta... 166 2e-40 1 57.3% 1:150 1:145 MLNQLENLAKCVGGNNELIDQWLQARKGLLVAYYHLIGLKPNKEKHTPLDEEALDAFCHQLVDYLSAGHFLVYDSIVPEGESSSTLT-----YSGLQENTQQIMALYDSHLENAIDHDNYLSFQEALSGVGEALATRFVLEDKLIQQAME--------
14 UniRef50_Q1MYZ4 Regulator of sigma D n=2 Ta... 164 8e-40 1 36.3% 1:157 1:158 MLESTKDAQERWGGVHDLIDRWLSERQNMLVLYFAIRGLKPFSPRETPLSVK-VEAFCQVLMDYLSAGHFEIYEKLLLEAqdDGGIDLARKHYPRLEQITERCVEFNDKYDNAEHCLEQLSDLPKDLSEIGELLEERFELEDELIENLHNVHKQTPA-
15 UniRef50_Q21EN8 Regulator of RNA polymerase... 163 2e-39 1 33.1% 1:154 1:151 MLEDCKSAQERWGGVSEIIDRWLQERQQMLVLYCNLSEICDLPDHPERAA--QVKTLCEIVVDYVSAGHFEIYNQLLqeFEDQEGLKQAGELFKIIDSSTEVALDFNDKYLET----DDLETINQDLSHLGESLVSRFEAEDKMIEVLHVSHKD----
16 UniRef50_Q2BL08 Regulator of RpoD, Rsd/AlgQ... 163 2e-39 1 33.8% 1:154 1:152 MLEKCKNAKERWGGVSEIIDSWLEERQALISQFVHL----PEHHINDELNTK-VQSFCQVLMDYLSSGHFEVYEQLLREGsdDGSLEEGQSILPKIQISTDVALDFNDDFSnlDPTVQQIREFSERLSKLGEALEERFELEDQMIAVLHTSHKE----
17 UniRef50_Q1ZHX9 Regulator of sigma D n=1 Ta... 160 9e-39 1 31.8% 1:151 1:153 MLRNIEKVKAEWGGTLNVIDGWLANRQQLVVLYCKLVGTStqQKKQELPSQKEITNFCQTLLDYTSTGHFGIYEQIicKLDGEQNLKIAQELYSRITTTTDTALNFNDKYAENATEIA-LLDFDDDLSELGQKMEERFEREDQLLEVLMLH-------
18 UniRef50_A0Y9W1 Regulator of sigma D n=1 Ta... 160 1e-38 1 31.8% 1:154 1:151 MLDNC-TIEERWNAVDKLVERWLQERQLVIVQFCALSGVHEL-NQDDDPSSMRLQNFCQLLVDYMSAGHFEVYYEVIREAeqDGSVNLAKGLMPEITLTTKISMDFNDLYTSG---KGDLGHLSSSLSKLGENLAARFELEDQLINTMHESHRE----
19 UniRef50_A6VTB7 Regulator of sigma D n=2 Ta... 158 6e-38 1 25.2% 1:155 1:154 MLEGCKTAQERWGGVHVIIDRWLEQRRQLLEMGIYLRE----RGELTPMDTPKIQLFCEQLVDYVSAGHFTVYEQLakEFHDDGAVILLRELLPLIDSTTEVAIEFNDKYDTKEHCNAQLEALPFSLQALAIVMAERFQYEDQLIKELHEAHSEK---
20 UniRef50_A4SRT4 Regulator of SigmaD n=3 Tax... 152 4e-36 1 31.1% 1:148 9:157 MLTELEKTKRALAGKHRAIDDWLDARQALLVEYMRLAGLTPARNKQRspSPSELQRFCDQLVDYVSAGHFEIYNHVVAAFEQadKLELAKRIYPHIRECTEFALEFNDKYSNAD--EAQMLLLDEDLNQLGPVLEDRFKQEDRLVKAL----------
21 UniRef50_Q0VSZ1 Regulator of RNA polymerase... 147 9e-35 1 23.1% 1:156 1:160 MASSTSAALAQWQRIEALVQAWLDERQQLIVLLCTMQGLKgqPNDNPQPIHRQVQRFCQLLMDYISAGYFEVYRELVNEArqRDNPTLTRQILAKLDRSTDAALAFNEDFEHPDQCLAQRDVLPERISALMETLEERFALEDQLILSIHQ--QDPP--
22 UniRef50_Q1QU59 Alginate regulatory protein... 145 5e-34 1 27.2% 1:158 1:159 MLEDTKTALERWGGVHTLIDRWLEQRRDMLVTLVELQEACDAEL--ETVTKERIDAFSETLMDYISGGHFEIYPQLRDefDDQEALALADHLLARLEMSTQMVLEFDNDYSTPVRCQHYAARLPAWLERLTKGLTERFALEDQLIARLHAAHAPSHAS
23 UniRef50_C4LAY5 Regulator of RpoD, Rsd/AlgQ... 144 7e-34 1 37.8% 1:148 1:149 MLVTLDKIREQVAGKHPAIDAWLDVRRTLLVEYMQLAGLMPPYSK-TLPSKEALSDFCDRLVDYISAGHFEIYEILIDAYEKVQelSLTNRLIDRIQDTTESILDFNERY--GDISDDEMPELEADLSQLGLTLEERFKLEDKLVLVL----------
24 UniRef50_C6CN76 Regulator of RpoD, Rsd/AlgQ... 136 2e-31 1 48.3% 1:151 1:149 MLKQLQRLTEDVGGHYALIDQWLQARKHLLLAYYHLLSIQTGQT----PAAQTLGGFCHHLVDYLSVGHFHVYERMLQemLNERKLTLASHFDMALRSNTQQIMDIYDSHLAFFIEPADSLAFRQALSGVGEALAMRFTLEDSLIRLMFDH-------
25 UniRef50_B7RZZ8 Putative uncharacterized pr... 130 1e-29 1 31.0% 9:153 7:149 --------QQQFNAVEELLTRWLKERRELLGKYTEIAVGMDGMLDQEALDLRQ-RALCQQLVDYVSSGHFEVYLELFEEAeaDGSNVVAAKLMPAIVDTTEIIMAYEEKYTSQDSDKAKV---KRDLSSLGEVLESRFLLEDRLIAGLHNSHR-----
26 UniRef50_Q5P4L9 Putative uncharacterized pr... 127 1e-28 1 18.8% 17:149 155:286 ----------------QLISALKEDHQHLLGIFTAIVAARNAG--NLSLAQTQLDRLRIGLMDHLLKENVRLYVYLEHFLKTDasHELMHGFRHEMDDIGRAVVDFLDRYRQIGTHPELAAQFGSDLDAIGEALAGRIRREEEILYPMY---------
27 UniRef50_UPI0001698913 anti-RNA polymerase sigma 7... 122 4e-27 1 24.2% 1:132 21:150 MSTQQQATAERRTGTQGMINNLMEERRQMLVLFCQVAGLEPYARTESL--EQLLQNFCQVLVDYTAFGHFEVFGKISDGTERRSqlHVAEEIYPGFVEATETAVAFNDKYDISDHALS-FDHLSEDMSLLGE--------------------------
28 UniRef50_C7R6Q4 Putative uncharacterized pr... 112 4e-24 1 13.5% 18:150 44:176 -----------------LIDNLKGDHNHLVGLYGRIWS-EGFEANDRQKTADLVTQFKRDFQAHLLKENVKFYVYLEQKLSDDSsmDLVKDFRSEMNDIAQAVIRFCKTYSKPIITAEQKQSFEKDFETVGKVLTHRVSLEENELYTLYQ--------
29 UniRef50_C4KD85 Hemerythrin HHE cation bind... 106 2e-22 1 14.3% 17:149 50:181 ----------------ELVERLVRDHRLMLERFGAIREAAHAGRFDEVVP--LLERFRVDLHAHLLVENVRLYVYLEHTLADDpsHALMHEFRHDMDEIGKKVIAFLARYVRLGEDPALAASFAADLERVGAVLVDRIQREEDTLYPLY---------
30 UniRef50_B9L7E3 Putative hemerythrin HHE ca... 104 1e-21 1 15.9% 5:149 8:149 ----LKKLKKFYSFEDKLISELKHDHQKLFSLFNKIE--KNIQKRNYEKIPEILKKFHYEYRLHIIYEDNYFYTYMKRKYKNDDklEFINQKQEEMKSITKAIADFINRFDS--IKEIQTEKFKNELQKLGKALKSRVEFEEKELYTLY---------
31 UniRef50_Q1MY12 Putative uncharacterized pr... 103 3e-21 1 18.4% 25:149 41:165 ------------------------EREHEEILNCLVLCRQACLSGRYSLVPKFLADFRSILFSHLIKERTILYQELKSHISDDDTLKSIRAFKHEMELFQGDLTSFILKWREEETVKSKTASFLKELNRIGKALVFRFAKEKDTIHSMH---------
32 UniRef50_A6Q9Q1 Putative uncharacterized pr... 96 5e-19 1 12.6% 1:151 1:144 MFRSLFKTK-----NEKLVEKWEEEHRAIVALATKV--LESYDAYNEKAAKQALKELNKLAVDHVMDEDLKLFKLMKEETEKIDKhsMVEDFVVGFKSTKITLMNFLAKYASPDVPLDD--EFYTTFKELVDILAQRISFEESNLYSKLNS-------
33 UniRef50_C6E5W2 Hemerythrin HHE cation bind... 88 1e-16 1 12.6% 17:151 3:132 ----------------RLIDELKRDH---IEIDAMLAKVRDSKITNQEAHKILIAA-KVKLLAHLKKEDLQLYPVLNKQAVNDTALKRSVEFYAkmNEITADAVAFFDKYSPADSSID--IEFARAFGRLYSILSRRLRSEESTLYPAYEK-------
34 UniRef50_C8PQE0 Putative uncharacterized pr... 71 1e-11 1 12.3% 43:148 29:133 ------------------------------------------DKANAPLIAELINKTTGVLNMHLASEDHFVYPKLL-ESSDEKIRSITRSYMNEMTGIADSYLAFHKKFNTPSKILANIDEFKRTFKKVRDALLLRIDREEKELYTL----------
35 UniRef50_B8DMH7 Hemerythrin HHE cation bind... 58 6e-08 1 16.7% 58:153 44:141 ---------------------------------------------------------CKELLahLRKEDTMLYPALRQAAGKGDLGNVADSFASEMQSISGSLLEFFARYdsTGTADAGGLDFARELGRIIIALKMRIQREESRLYPAYEKAR-----
36 UniRef50_A6QCE3 Putative uncharacterized pr... 55 1e-06 1 10.4% 15:149 16:146 --------------EHKLATKWEKEHVALVELAGKI--IAAYASGDTALAKLEIKKMGKAASEHVMNEDLEFMKLEKKAKLDDKTKAKIQEFQKTFKKDKLALLSFLAKYGQDDSVLD--GEFFDDFNTIIEVVSDRIKYEEENLYKLM---------
37 UniRef50_B3E648 Putative uncharacterized pr... 54 2e-06 1 11.4% 16:147 2:126 ---------------SVLITALKREHQALK---NQVAAIKQAGVVSAE-GFAELQRLRNNLKAHLQHEDRDLYPRLAEAARDDVNLqlLDRFQNEMQEIATDAERFFERY----PAPEQSVVFARDIGRIFSLLGNRIITEESVLYP-----------
38 UniRef50_Q1Q4G9 Putative uncharacterized pr... 50 3e-05 1 12.0% 19:151 5:129 ------------------VDSFKATHKAAIDLLGQIDSQSGQKRLDT------LNSLKDALLAHVAEEN-KVITESMGKSDNVFFKSAAQSFIDELGKIAeaLLPFFNKYSTPDAVDS--GDFVSDFDGIKSALAGRIAFEEGTFYPELEK-------
39 UniRef50_A6M1I5 Putative uncharacterized pr... 48 7e-05 1 12.3% 19:148 3:134 ------------------IDNLMREHKGIFEEINYINESINNKKFESNliTTHINKLAGKLKIHLSSEDKFLYPNLLN-GDDNKLKNLANSYINEMGGISDTFTNYKNKFNTKSKIISEGNefTSETKKILVAIEKRISKEESELYKL----------
40 UniRef50_C1SNK3 Putative uncharacterized pr... 47 2e-04 1 13.8% 16:153 2:132 ---------------SDLVKELKNDHEKLlmLDAQKLGLATDAGRSKLMEGKML------LTEHLRKEDSRLYPELKKLSAGEasSKIVDEFSSEMKGLSATVIDFINRAGTAEID----MEYAKELGRIISSLRMRIRKEEIQLYPLYERLS-----
41 UniRef50_Q97M38 Putative uncharacterized pr... 47 2e-04 1 15.2% 19:150 3:135 ------------------IDNLKRQHTEIYSSIKMLKGfkKMSEEDYAEMAKTVSVLAGILKVHLQSEDKFLYPELL-KNKDEAISNMAKEYIDDMGNIGKKFEEYKNKYNTKIKVCDNVLSLKKDTEEVLNLLVNRLNKEDKALYPLIN--------
42 UniRef50_A6DDE9 Putative uncharacterized pr... 46 4e-04 1 13.6% 18:149 22:152 -----------------LVKKLEKDHEVILNFLEKIKG--NIKNKNYSKAFHILNEMFYSYKKHILYENNYLYPKLFKKYYgeNIIEAIKEIKDEEENISKAIDRLMIIYEAPWVIEKNHKEFLSDIENFSLILKERVDFEESRLFVLY---------
43 UniRef50_C1IBQ4 Putative uncharacterized pr... 43 0.005 1 10.1% 19:147 3:132 ------------------IDNLERQHLDIKGLLKKINSILSIRNMEDSLDELviNTLAGKLNIHMKTEDKFLYPELIN-SSNTNLRNISKEYSEEMGSIHIIFTEFKNQFNTKNKILNDKDKFLIESKKVLKLLENRIEKEDKSLYP-----------
44 UniRef50_C5RI11 Hemerythrin HHE cation bind... 42 0.008 1 14.3% 64:147 51:133 ---------------------------------------------------------------HMHSEDKFLYPTLI-ESEDEDLRKLAKEYGEEMGTIHGDFSDYKNKFNTKYKILNDTDSFLKESKEILKLLESRISKEDMHLYP-----------
45 UniRef50_C6Q1U0 Hemerythrin HHE cation bind... 40 0.022 1 12.3% 19:148 4:134 ------------------INNLVRQHEAIRENVKTIESlkNSIENDSFEISKNINLLIGVLKVHLQSEDNFLYPELLN-GDDDKLKDMAKHYIDEMGNINAELEKYKAEFNTKTKINNNIESFKNHTAEIIKVLKNRLDKEDKHLYPL----------
46 UniRef50_A4G4V0 Putative uncharacterized pr... 39 0.040 1 7.8% 19:147 3:131 ------------------IDKFKQQHVDILGNIATLRKlqAGVAQNAPDIARLVVAMSSTIKLHLAVEDKVLYPAL-QNGQNVAMARMGKQFQEEMSVIAHTYEGFAQRWNTAHSLQHHEDDFRADANIVLRTLHERMQRENRDFYP-----------
47 UniRef50_C7IEE0 Hemerythrin HHE cation bind... 39 0.046 1 11.6% 19:147 4:133 ------------------LETLKRQHEEIAEILSDIKsiNHKNIANEAliSSKISNLAGKLKVHLNTEDQYMYPQLL-KSSNSEVQTTAQAYIDEMGTISTEFMAYKDRFNTRTKITNEIDLFVSESKRIFSLLQQRIAKEDSNLYQ-----------
consensus/100% ...............................................................ah..t...hh........t.................t.....h.....................t.h............................
consensus/90% ..................hpth...+...h.....h.................lt.ht..h..ah..tp..la..h....tttt....htth..tht..tt.h.ta.tpa.t.....t....h.ttht.lh..h..Rh.hE-t.l.............
consensus/80% ..................lpphhpt+pthh..hhtl.t...............lpthpt.Lhsaltttch.lY..lhtthpspt.hthhpphh.phtt.sp.hhta.spa.p.....t.h.ph.pphptlhphlttRhthE-p.l..h.......
consensus/70% .................ll-phhpp+ptll..htpl.shts.tttpt....p.lpthsp.LhsalpttchplY.plhpphpsps.hphspphhsphpphopthhsF.scasp.t...sth.phtpchspltphLtpRhphE-phl..hh....
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