Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	Q	K	M	I	Q	F	S	G	D	V	S	L	P	A	V	G	Q	G	T	W	Y	M	G	E	D	A	S	Q	R	K	T	E	V	A	A	L	R	A	G	I	E	L	G	L	T	L	I	D	T	A	E	M	Y	A	D	G	G	A
Secondary structure
SS confidence
Disorder		?	?	?	?				?			?																?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	K	V	V	G	E	A	L	T	G	L	R	E	K	V	F	L	V	S	K	V	Y	P	W	N	A	G	G	Q	K	A	I	N	A	C	E	A	S	L	R	R	L	N	T	D	Y	L	D	L	Y	L	L	H	W	S	G	S	F	A	F
Secondary structure
SS confidence
Disorder																											?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	E	T	V	A	A	M	E	K	L	I	A	Q	G	K	I	R	R	W	G	V	S	N	L	D	Y	A	D	M	Q	E	L	W	Q	L	P	G	G	N	Q	C	A	T	N	Q	V	L	Y	H	L	G	S	R	G	I	E	Y	D	L	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	W	C	Q	Q	Q	Q	M	P	V	M	A	Y	S	P	L	A	Q	A	G	R	L	R	N	G	L	L	K	N	A	V	V	N	E	I	A	H	A	H	N	I	S	A	A	Q	V	L	L	A	W	V	I	S	H	Q	G	V	M	A	I
Secondary structure
SS confidence
Disorder																			?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Sequence		P	K	A	A	T	I	A	H	V	Q	Q	N	A	A	V	L	E	V	E	L	S	S	A	E	L	A	M	L	D	K	A	Y	P	A	P	K	G	K	T	A	L	D	M	V
Secondary structure
SS confidence
Disorder																															?	?		?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1lqa chain A Region: 3 - 280 Aligned: 277 Modelled: 278 Confidence: 100.0% Identity: 32% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3n2t chain A Region: 1 - 272 Aligned: 269 Modelled: 272 Confidence: 100.0% Identity: 29% PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the glycerol dehydrogenase akr11b4 from gluconobacter2 oxydans Phyre2 PDB 3erp chain A Region: 2 - 272 Aligned: 271 Modelled: 271 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium Phyre2 PDB 1j96 chain A Region: 1 - 283 Aligned: 274 Modelled: 283 Confidence: 100.0% Identity: 28% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1q5m chain A Region: 2 - 276 Aligned: 267 Modelled: 272 Confidence: 100.0% Identity: 27% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1ur3 chain M Region: 2 - 271 Aligned: 269 Modelled: 260 Confidence: 100.0% Identity: 26% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1pyf chain A Region: 4 - 274 Aligned: 268 Modelled: 271 Confidence: 100.0% Identity: 28% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3h7u chain A Region: 2 - 271 Aligned: 258 Modelled: 270 Confidence: 100.0% Identity: 31% PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c9 Phyre2 PDB 1qwk chain A Region: 3 - 284 Aligned: 269 Modelled: 282 Confidence: 100.0% Identity: 26% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3f7j chain B Region: 3 - 283 Aligned: 266 Modelled: 281 Confidence: 100.0% Identity: 32% PDB header:oxidoreductase Chain: B: PDB Molecule:yvgn protein; PDBTitle: b.subtilis yvgn Phyre2 PDB 1frb chain A Region: 5 - 283 Aligned: 266 Modelled: 276 Confidence: 100.0% Identity: 34% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3eau chain A domain 1 Region: 5 - 273 Aligned: 269 Modelled: 269 Confidence: 100.0% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1pz1 chain A Region: 3 - 273 Aligned: 268 Modelled: 270 Confidence: 100.0% Identity: 27% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3n6q chain F Region: 2 - 273 Aligned: 272 Modelled: 272 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: F: PDB Molecule:yghz aldo-keto reductase; PDBTitle: crystal structure of yghz from e. coli Phyre2 PDB 1s1p chain A Region: 4 - 276 Aligned: 265 Modelled: 273 Confidence: 100.0% Identity: 28% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3lut chain A Region: 5 - 273 Aligned: 269 Modelled: 269 Confidence: 100.0% Identity: 25% PDB header:membrane protein Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2; PDBTitle: a structural model for the full-length shaker potassium channel kv1.2 Phyre2 PDB 1afs chain A Region: 2 - 276 Aligned: 267 Modelled: 275 Confidence: 100.0% Identity: 23% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1gve chain A Region: 15 - 280 Aligned: 265 Modelled: 266 Confidence: 100.0% Identity: 26% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1hqt chain A Region: 6 - 283 Aligned: 266 Modelled: 278 Confidence: 100.0% Identity: 31% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1ynp chain A Region: 2 - 282 Aligned: 269 Modelled: 281 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: aldo-keto reductase akr11c1 from bacillus halodurans (apo form) Phyre2 1 d1lqaa_ 2 c3n2tA_ 3 c3erpA_ 4 d1j96a_ 5 d1q5ma_ 6 d1ur3m_ 7 d1pyfa_ 8 c3h7uA_ 9 d1qwka_ 10 c3f7jB_ 11 d1frba_ 12 d3eaua1 13 d1pz1a_ 14 c3n6qF_ 15 d1s1pa_ 16 c3lutA_ 17 d1afsa_ 18 d1gvea_ 19 d1hqta_ 20 c1ynpA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1lqaa_ 100.0 32 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 2 c3n2tA_ 100.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the glycerol dehydrogenase akr11b4 from gluconobacter2 oxydans 3 c3erpA_ 100.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium 4 d1j96a_ 100.0 28 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 5 d1q5ma_ 100.0 27 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 6 d1ur3m_ 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 7 d1pyfa_ 100.0 28 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 8 c3h7uA_ 100.0 31 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c9 9 d1qwka_ 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 10 c3f7jB_ 100.0 32 PDB header:oxidoreductase Chain: B: PDB Molecule:yvgn protein; PDBTitle: b.subtilis yvgn 11 d1frba_ 100.0 34 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 12 d3eaua1 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 13 d1pz1a_ 100.0 27 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 14 c3n6qF_ 100.0 26 PDB header:oxidoreductase Chain: F: PDB Molecule:yghz aldo-keto reductase; PDBTitle: crystal structure of yghz from e. coli 15 d1s1pa_ 100.0 28 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 16 c3lutA_ 100.0 25 PDB header:membrane protein Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2; PDBTitle: a structural model for the full-length shaker potassium channel kv1.2 17 d1afsa_ 100.0 23 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 18 d1gvea_ 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 19 d1hqta_ 100.0 31 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 20 c1ynpA_ 100.0 27 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: aldo-keto reductase akr11c1 from bacillus halodurans (apo form) 21 c3h7rA_ not modelled 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c8 22 c2bp1C_ not modelled 100.0 29 PDB header:oxidoreductase Chain: C: PDB Molecule:aflatoxin b1 aldehyde reductase member 2; PDBTitle: structure of the aflatoxin aldehyde reductase in complex2 with nadph 23 c1vbjB_ not modelled 100.0 28 PDB header:oxidoreductase Chain: B: PDB Molecule:prostaglandin f synthase; PDBTitle: the crystal structure of prostaglandin f synthase from2 trypanosoma brucei 24 d1mi3a_ not modelled 100.0 30 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 25 c3up8B_ not modelled 100.0 30 PDB header:oxidoreductase Chain: B: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase b; PDBTitle: crystal structure of a putative 2,5-diketo-d-gluconic acid reductase b 26 d1c9wa_ not modelled 100.0 32 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 27 c2wztA_ not modelled 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of a mycobacterium aldo-keto reductase in2 its apo and liganded form 28 c3buvB_ not modelled 100.0 27 PDB header:oxidoreductase Chain: B: PDB Molecule:3-oxo-5-beta-steroid 4-dehydrogenase; PDBTitle: crystal structure of human delta(4)-3-ketosteroid 5-beta-reductase in2 complex with nadp and hepes. resolution: 1.35 a. 29 d1ah4a_ not modelled 100.0 32 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 30 d1vp5a_ not modelled 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 31 c3o0kB_ not modelled 100.0 29 PDB header:oxidoreductase Chain: B: PDB Molecule:aldo/keto reductase; PDBTitle: crystal structure of aldo/keto reductase from brucella melitensis 32 d1mzra_ not modelled 100.0 28 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 33 d2alra_ not modelled 100.0 31 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 34 c2bgsA_ not modelled 100.0 29 PDB header:oxidoreductase Chain: A: PDB Molecule:aldose reductase; PDBTitle: holo aldose reductase from barley 35 d1hw6a_ not modelled 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 36 c3b3dA_ not modelled 100.0 33 PDB header:oxidoreductase Chain: A: PDB Molecule:putative morphine dehydrogenase; PDBTitle: b.subtilis ytbe 37 d1us0a_ not modelled 100.0 32 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 38 c1zgdB_ not modelled 100.0 29 PDB header:plant protein Chain: B: PDB Molecule:chalcone reductase; PDBTitle: chalcone reductase complexed with nadp+ at 1.7 angstrom2 resolution 39 c3krbB_ not modelled 100.0 28 PDB header:oxidoreductase Chain: B: PDB Molecule:aldose reductase; PDBTitle: structure of aldose reductase from giardia lamblia at 1.75a resolution 40 c3ln3A_ not modelled 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrodiol dehydrogenase; PDBTitle: crystal structure of putative reductase (np_038806.2) from2 mus musculus at 1.18 a resolution 41 c1uasA_ not modelled 78.3 13 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of rice alpha-galactosidase 42 c3ng3A_ not modelled 59.7 16 PDB header:lyase Chain: A: PDB Molecule:deoxyribose-phosphate aldolase; PDBTitle: crystal structure of deoxyribose phosphate aldolase from mycobacterium2 avium 104 in a schiff base with an unknown aldehyde 43 d1uasa2 not modelled 58.8 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 44 d1o0ya_ not modelled 53.7 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 45 c3a5vA_ not modelled 37.1 20 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of alpha-galactosidase i from mortierella vinacea 46 d1mzha_ not modelled 35.8 20 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 47 d1jpma1 not modelled 34.9 8 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 48 c3oa3A_ not modelled 34.4 11 PDB header:lyase Chain: A: PDB Molecule:aldolase; PDBTitle: crystal structure of a putative deoxyribose-phosphate aldolase from2 coccidioides immitis 49 c2ph5A_ not modelled 33.6 21 PDB header:transferase Chain: A: PDB Molecule:homospermidine synthase; PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54 50 d1yx1a1 not modelled 30.9 12 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:KguE-like 51 d1vcva1 not modelled 30.7 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 52 d1tg7a5 not modelled 30.6 8 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Glycosyl hydrolases family 35 catalytic domain 53 c1r46B_ not modelled 28.0 19 PDB header:hydrolase Chain: B: PDB Molecule:alpha-galactosidase a; PDBTitle: structure of human alpha-galactosidase 54 d1x87a_ not modelled 26.2 19 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 55 d1olta_ not modelled 25.7 16 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Oxygen-independent coproporphyrinogen III oxidase HemN 56 d1vp8a_ not modelled 24.7 18 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 57 d1uwka_ not modelled 22.7 22 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 58 c2fknC_ not modelled 22.4 22 PDB header:lyase Chain: C: PDB Molecule:urocanate hydratase; PDBTitle: crystal structure of urocanase from bacillus subtilis 59 d2q02a1 not modelled 21.5 17 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 60 c1wlzD_ not modelled 20.4 9 PDB header:unknown function Chain: D: PDB Molecule:cap-binding protein complex interacting protein PDBTitle: crystal structure of djbp fragment which was obtained by2 limited proteolysis 61 d1wlza1 not modelled 20.4 9 Fold:EF Hand-like Superfamily:EF-hand Family:EF-hand modules in multidomain proteins 62 d1p1xa_ not modelled 20.3 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 63 c3ic5A_ not modelled 20.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative saccharopine dehydrogenase; PDBTitle: n-terminal domain of putative saccharopine dehydrogenase from ruegeria2 pomeroyi. 64 c3l2iB_ not modelled 20.1 12 PDB header:lyase Chain: B: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: 1.85 angstrom crystal structure of the 3-dehydroquinate dehydratase2 (arod) from salmonella typhimurium lt2. 65 d1r46a2 not modelled 17.7 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 66 c3ktcB_ not modelled 17.0 17 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution 67 c2w9mB_ not modelled 16.7 12 PDB header:dna replication Chain: B: PDB Molecule:polymerase x; PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans 68 c3g8rA_ not modelled 16.5 15 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472 69 d1szna2 not modelled 16.3 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 70 c2vwtA_ not modelled 15.4 15 PDB header:lyase Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase; PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex 71 c3ik4A_ not modelled 14.7 9 PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from herpetosiphon aurantiacus 72 c2cg8B_ not modelled 13.9 20 PDB header:lyase/transferase Chain: B: PDB Molecule:dihydroneopterin aldolase 6-hydroxymethyl-7,8- PDBTitle: the bifunctional dihydroneopterin aldolase 6-hydroxymethyl-2 7,8-dihydropterin synthase from streptococcus pneumoniae 73 c2gjxE_ not modelled 13.1 7 PDB header:hydrolase Chain: E: PDB Molecule:beta-hexosaminidase alpha chain; PDBTitle: crystallographic structure of human beta-hexosaminidase a 74 d2plca_ not modelled 12.4 38 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Bacterial PLC 75 c2ksnA_ not modelled 12.1 38 PDB header:signaling protein Chain: A: PDB Molecule:ubiquitin domain-containing protein 2; PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2 76 c2wjeA_ not modelled 12.0 12 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase cpsb; PDBTitle: crystal structure of the tyrosine phosphatase cps4b from2 steptococcus pneumoniae tigr4. 77 d1bxni_ not modelled 11.9 10 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 78 c3dx5A_ not modelled 11.9 9 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis 79 d1t57a_ not modelled 11.5 11 Fold:Pyruvate kinase C-terminal domain-like Superfamily:PK C-terminal domain-like Family:MTH1675-like 80 d2ptda_ not modelled 10.9 23 Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Bacterial PLC 81 d1gqna_ not modelled 10.6 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 82 d2gjxa1 not modelled 10.3 7 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain 83 c3e4fB_ not modelled 10.2 24 PDB header:transferase Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase; PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis 84 d1sr9a2 not modelled 9.9 29 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:HMGL-like 85 d2byla1 not modelled 9.9 9 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 86 c2k6xA_ not modelled 9.9 4 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure 87 d2hjsa1 not modelled 9.9 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 88 c3smaD_ not modelled 9.4 20 PDB header:transferase Chain: D: PDB Molecule:frbf; PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf 89 d2d0oa1 not modelled 9.3 10 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Swiveling domain of dehydratase reactivase alpha subunit Family:Swiveling domain of dehydratase reactivase alpha subunit 90 d1o98a1 not modelled 9.0 17 Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain 91 d3bofa1 not modelled 8.9 16 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 92 d1d9ea_ not modelled 8.8 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 93 d1rlia_ not modelled 8.8 9 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN 94 d1zy9a2 not modelled 8.8 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:YicI catalytic domain-like 95 c1ktbA_ not modelled 8.7 17 PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: the structure of alpha-n-acetylgalactosaminidase 96 c3daqB_ not modelled 8.2 17 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus 97 d1qbaa3 not modelled 8.1 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain 98 c2z2vA_ not modelled 8.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical protein ph1688; PDBTitle: crystal structure of l-lysine dehydrogenase from2 hyperthermophilic archaeon pyrococcus horikoshii 99 c3ju2A_ not modelled 7.9 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein smc04130; PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0