BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (56 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A9N3H4 Putative uncharacterized protein n=5 Tax=Salmone...    72   7e-12
UniRef50_P38394 Uncharacterized protein ydaE n=16 Tax=Enterobact...    68   1e-10
UniRef50_A9N4J4 Putative uncharacterized protein n=5 Tax=Salmone...    67   2e-10
UniRef50_O30352 Gifsy-1 prophage protein n=18 Tax=Enterobacteria...    60   2e-08
UniRef50_A8AHS8 Putative uncharacterized protein n=2 Tax=Enterob...    59   5e-08

>UniRef50_A9N3H4 Putative uncharacterized protein n=5 Tax=Salmonella enterica
          subsp. enterica RepID=A9N3H4_SALPB
          Length = 56

 Score = 71.7 bits (174), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 31/55 (56%)

Query: 1  MTKKIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHE 55
          M  +  CAYHLC K +E+ K ++  L  + G     E R YCS  CA  DQMAHE
Sbjct: 1  MHNQKTCAYHLCGKTIEQGKEVKNELTLIRGAQLTHEERDYCSVRCASYDQMAHE 55


>UniRef50_P38394 Uncharacterized protein ydaE n=16 Tax=Enterobacteriaceae
          RepID=YDAE_ECOLI
          Length = 56

 Score = 67.9 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MTKKIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHEL 56
          MTKKIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHEL
Sbjct: 1  MTKKIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHEL 56


>UniRef50_A9N4J4 Putative uncharacterized protein n=5 Tax=Salmonella enterica
          subsp. enterica RepID=A9N4J4_SALPB
          Length = 93

 Score = 67.1 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 5  IKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHEL 56
          I CAY  C+K + E  A E  L +MH  L   + +KYCS+ CA  DQMAHEL
Sbjct: 45 INCAY--CQKAIPEETAYEYELIYMHETLISRK-KKYCSKRCASHDQMAHEL 93


>UniRef50_O30352 Gifsy-1 prophage protein n=18 Tax=Enterobacteriaceae
          RepID=O30352_SALTY
          Length = 52

 Score = 59.8 bits (143), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 5  IKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHE 55
           +C Y  C+K ++E K ++  L +++G     + ++YCS  CAE DQMAHE
Sbjct: 3  KQCGY--CRKSIDEGKEVKNTLLYLNGSQLARKEKEYCSRQCAEYDQMAHE 51


>UniRef50_A8AHS8 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
          RepID=A8AHS8_CITK8
          Length = 52

 Score = 58.6 bits (140), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 4  KIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHE 55
          + +C Y  C+K VEE K ++ +L + +G    ++ ++YCS+ CAE DQMAHE
Sbjct: 2  QKECGY--CRKPVEEGKEVKSILFYRNGNRLANKEKEYCSKQCAEYDQMAHE 51


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_A9N3H4 Putative uncharacterized protein n=5 Tax=Salmone...    72   5e-12
UniRef50_P38394 Uncharacterized protein ydaE n=16 Tax=Enterobact...    67   2e-10
UniRef50_A9N4J4 Putative uncharacterized protein n=5 Tax=Salmone...    67   2e-10
UniRef50_O30352 Gifsy-1 prophage protein n=18 Tax=Enterobacteria...    60   2e-08
UniRef50_A8AHS8 Putative uncharacterized protein n=2 Tax=Enterob...    59   4e-08

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_A9N3H4 Putative uncharacterized protein n=5 Tax=Salmonella enterica
          subsp. enterica RepID=A9N3H4_SALPB
          Length = 56

 Score = 72.1 bits (175), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 31/55 (56%)

Query: 1  MTKKIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHE 55
          M  +  CAYHLC K +E+ K ++  L  + G     E R YCS  CA  DQMAHE
Sbjct: 1  MHNQKTCAYHLCGKTIEQGKEVKNELTLIRGAQLTHEERDYCSVRCASYDQMAHE 55


>UniRef50_P38394 Uncharacterized protein ydaE n=16 Tax=Enterobacteriaceae
          RepID=YDAE_ECOLI
          Length = 56

 Score = 67.1 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MTKKIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHEL 56
          MTKKIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHEL
Sbjct: 1  MTKKIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHEL 56


>UniRef50_A9N4J4 Putative uncharacterized protein n=5 Tax=Salmonella enterica
          subsp. enterica RepID=A9N4J4_SALPB
          Length = 93

 Score = 66.7 bits (161), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 5  IKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHEL 56
          I CAY  C+K + E  A E  L +MH  L   + +KYCS+ CA  DQMAHEL
Sbjct: 45 INCAY--CQKAIPEETAYEYELIYMHETLISRK-KKYCSKRCASHDQMAHEL 93


>UniRef50_O30352 Gifsy-1 prophage protein n=18 Tax=Enterobacteriaceae
          RepID=O30352_SALTY
          Length = 52

 Score = 59.8 bits (143), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 5  IKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHE 55
           +C Y  C+K ++E K ++  L +++G     + ++YCS  CAE DQMAHE
Sbjct: 3  KQCGY--CRKSIDEGKEVKNTLLYLNGSQLARKEKEYCSRQCAEYDQMAHE 51


>UniRef50_A8AHS8 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
          RepID=A8AHS8_CITK8
          Length = 52

 Score = 59.0 bits (141), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 4  KIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSEACAEKDQMAHE 55
          + +C Y  C+K VEE K ++ +L + +G    ++ ++YCS+ CAE DQMAHE
Sbjct: 2  QKECGY--CRKPVEEGKEVKSILFYRNGNRLANKEKEYCSKQCAEYDQMAHE 51


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.309    0.125    0.370 

Lambda     K      H
   0.267   0.0382    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,265,867
Number of Sequences: 3077464
Number of extensions: 3971386
Number of successful extensions: 11325
Number of sequences better than 1.0e-01: 5
Number of HSP's better than  0.1 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11313
Number of HSP's gapped (non-prelim): 10
length of query: 56
length of database: 1,040,396,356
effective HSP length: 29
effective length of query: 27
effective length of database: 951,149,900
effective search space: 25681047300
effective search space used: 25681047300
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 87 (38.2 bits)
