14/01/2012 22:00:20 : INFO  : Run start: Sat Jan 14 22:00:20 GMT 2012
14/01/2012 22:00:24 : INFO  : Initialised job
14/01/2012 22:00:25 : INFO  : Renaming log file 'phyre2_20120114_220019.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/0594b43bd8485a50/phyre_20120114_220019.log'
14/01/2012 22:00:26 : INFO  : Initialised job:
Sequence
>batch____
MSQIHKHTIPANIADRCLINPQQYEAMYQQSINVPDTFWGEQGKILDWIKPYQKVKNTSF
APGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDASQSKHISYKELHRDVCRF
ANTLLELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNS
RLVITSDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDL
VEQASDQHQAEEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDI
YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTA
IRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGG
FMITPLPGATELKAGSATRPFFGVQPALVDNEGNPLEGATEGSLVITDSWPGQARTLFGD
HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHP
KIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTD
SLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAIAMPS

14/01/2012 22:00:26 : INFO  : Checked sequence
14/01/2012 22:00:29 : INFO  : Finding homologues with PSI-BLAST
14/01/2012 22:00:29 : INFO  : PSI-BLAST 3 iterations
14/01/2012 22:04:19 : INFO  : PSI-BLAST 5 iterations
14/01/2012 22:10:51 : INFO  : Finished PSI-BLAST
14/01/2012 22:10:53 : INFO  : Running Buildali to generate a3m file
15/01/2012 06:23:31 : INFO  : Converting to HMM
15/01/2012 06:24:43 : INFO  : Calibrating HMM
15/01/2012 06:25:09 : INFO  : Searching HMM database
15/01/2012 06:39:45 : INFO  : Finished buildali
15/01/2012 06:39:46 : INFO  : Predicting secondary structure
15/01/2012 06:39:51 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 06:39:52 : INFO  : Predicting Disordered regions
15/01/2012 06:39:55 : INFO  : Predicted Disorder (Disopred)
15/01/2012 06:39:56 : INFO  : Running memsat_svm check
15/01/2012 06:45:56 : INFO  : Running memsat_svm full
15/01/2012 06:51:57 : INFO  : Predicted Transmembrane (memsat_svm) ID '0594b43bd8485a50'
15/01/2012 06:51:58 : INFO  : Initialising fold library search
15/01/2012 06:52:01 : INFO  : Initialised search input
15/01/2012 06:52:02 : INFO  : Building Ensemble models
15/01/2012 06:52:05 : INFO  : Building hh.d1pg4a_.model.1.pdb
15/01/2012 06:52:17 : INFO  : Building d1pg4a_.1.pdb
15/01/2012 06:52:29 : INFO  : Building d1ry2a_.2.pdb
15/01/2012 06:52:42 : INFO  : Building c2vsqA_.3.pdb
15/01/2012 06:52:54 : INFO  : Building c3etcB_.4.pdb
15/01/2012 06:53:03 : INFO  : Building c3e7wA_.5.pdb
15/01/2012 06:53:13 : INFO  : Building d3cw9a1.6.pdb
15/01/2012 06:53:22 : INFO  : Building c3tsyA_.7.pdb
15/01/2012 06:53:32 : INFO  : Building d1mdba_.8.pdb
15/01/2012 06:53:43 : INFO  : Building c3eynB_.9.pdb
15/01/2012 06:53:53 : INFO  : Building c3ni2A_.10.pdb
15/01/2012 06:54:03 : INFO  : Building c3gqwB_.11.pdb
15/01/2012 06:54:14 : INFO  : Building c3kxwA_.12.pdb
15/01/2012 06:54:24 : INFO  : Building c3iteB_.13.pdb
15/01/2012 06:54:35 : INFO  : Building c2v7bB_.14.pdb
15/01/2012 06:54:46 : INFO  : Building c2d1tA_.15.pdb
15/01/2012 06:54:56 : INFO  : Building d1amua_.16.pdb
15/01/2012 06:55:07 : INFO  : Building c3dhvA_.17.pdb
15/01/2012 06:55:16 : INFO  : Building c1amuB_.18.pdb
15/01/2012 06:55:27 : INFO  : Building c3l8cA_.19.pdb
15/01/2012 06:55:36 : INFO  : Building d1lcia_.20.pdb
15/01/2012 06:56:02 : INFO  : Finished HH model building
15/01/2012 06:56:03 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 06:56:47 : INFO  : html domain output complete ID '0594b43bd8485a50'
15/01/2012 12:28:20 : INFO  : Run end  : Sun Jan 15 12:28:20 GMT 2012
