BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (146 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ADX7 Uncharacterized protein yhhA n=65 Tax=Enterobact... 279 2e-74 UniRef50_A8AR00 Putative uncharacterized protein n=12 Tax=Entero... 114 1e-24 UniRef50_A9MM93 Putative uncharacterized protein n=36 Tax=Entero... 89 4e-17 >UniRef50_P0ADX7 Uncharacterized protein yhhA n=65 Tax=Enterobacteriaceae RepID=YHHA_ECOLI Length = 146 Score = 279 bits (714), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 146/146 (100%), Positives = 146/146 (100%) Query: 1 MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKT 60 MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKT Sbjct: 1 MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKT 60 Query: 61 QTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGGMLNSNRNPDSSLNQQHML 120 QTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGGMLNSNRNPDSSLNQQHML Sbjct: 61 QTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGGMLNSNRNPDSSLNQQHML 120 Query: 121 PERRNGDMLNQPSTPQPDIPLKTIGP 146 PERRNGDMLNQPSTPQPDIPLKTIGP Sbjct: 121 PERRNGDMLNQPSTPQPDIPLKTIGP 146 >UniRef50_A8AR00 Putative uncharacterized protein n=12 Tax=Enterobacteriaceae RepID=A8AR00_CITK8 Length = 126 Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 96/130 (73%), Positives = 107/130 (82%), Gaps = 8/130 (6%) Query: 1 MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKT 60 MKRLLIL ALLPF GFAQPINT+NNPNQPGYQIPSQQRMQTQMQTQQ QQKGMLNQQLKT Sbjct: 1 MKRLLILAALLPFSGFAQPINTMNNPNQPGYQIPSQQRMQTQMQTQQTQQKGMLNQQLKT 60 Query: 61 QTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGGMLNSNRNPDSSLNQQHML 120 QTQLQQQHL+ Q+NNN+QRV Q Q R+Q+LPN NGGML+ S QQH+L Sbjct: 61 QTQLQQQHLQTQMNNNAQRVQQGQ------VREQVLPNNNGGMLSGGTRQSSG--QQHLL 112 Query: 121 PERRNGDMLN 130 P+R++GDMLN Sbjct: 113 PQRQSGDMLN 122 >UniRef50_A9MM93 Putative uncharacterized protein n=36 Tax=Enterobacteriaceae RepID=A9MM93_SALAR Length = 140 Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 85/146 (58%), Positives = 105/146 (71%), Gaps = 8/146 (5%) Query: 1 MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKT 60 MKR L++ +LLPF FAQP+NT+NNPN GYQIPSQQRMQTQMQTQQ+QQ+GML QQ++T Sbjct: 3 MKRFLLIISLLPFTAFAQPLNTMNNPNMQGYQIPSQQRMQTQMQTQQLQQQGMLKQQMQT 62 Query: 61 QTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGGMLNSNRNPDSSLNQQHML 120 QT+ QQQ+L++Q+N+++QRV Q QPG QQ LPNT GGML PD LN + Sbjct: 63 QTRSQQQNLQSQLNSSAQRVQQGQPGNGM-FGQQTLPNTQGGMLRGIGYPDRMLNHSQPM 121 Query: 121 PERRNGDMLNQPSTPQPDIPLKTIGP 146 + +G TPQP IPLKTI P Sbjct: 122 SPQNSG-------TPQPGIPLKTISP 140 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ADX7 Uncharacterized protein yhhA n=65 Tax=Enterobact... 156 2e-37 UniRef50_A9MM93 Putative uncharacterized protein n=36 Tax=Entero... 113 3e-24 UniRef50_A8AR00 Putative uncharacterized protein n=12 Tax=Entero... 95 9e-19 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P0ADX7 Uncharacterized protein yhhA n=65 Tax=Enterobacteriaceae RepID=YHHA_ECOLI Length = 146 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 146/146 (100%), Positives = 146/146 (100%) Query: 1 MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKT 60 MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKT Sbjct: 1 MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKT 60 Query: 61 QTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGGMLNSNRNPDSSLNQQHML 120 QTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGGMLNSNRNPDSSLNQQHML Sbjct: 61 QTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGGMLNSNRNPDSSLNQQHML 120 Query: 121 PERRNGDMLNQPSTPQPDIPLKTIGP 146 PERRNGDMLNQPSTPQPDIPLKTIGP Sbjct: 121 PERRNGDMLNQPSTPQPDIPLKTIGP 146 >UniRef50_A9MM93 Putative uncharacterized protein n=36 Tax=Enterobacteriaceae RepID=A9MM93_SALAR Length = 140 Score = 113 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 85/146 (58%), Positives = 105/146 (71%), Gaps = 8/146 (5%) Query: 1 MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKT 60 MKR L++ +LLPF FAQP+NT+NNPN GYQIPSQQRMQTQMQTQQ+QQ+GML QQ++T Sbjct: 3 MKRFLLIISLLPFTAFAQPLNTMNNPNMQGYQIPSQQRMQTQMQTQQLQQQGMLKQQMQT 62 Query: 61 QTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGGMLNSNRNPDSSLNQQHML 120 QT+ QQQ+L++Q+N+++QRV Q QPG QQ LPNT GGML PD LN + Sbjct: 63 QTRSQQQNLQSQLNSSAQRVQQGQPGNGM-FGQQTLPNTQGGMLRGIGYPDRMLNHSQPM 121 Query: 121 PERRNGDMLNQPSTPQPDIPLKTIGP 146 + +G TPQP IPLKTI P Sbjct: 122 SPQNSG-------TPQPGIPLKTISP 140 >UniRef50_A8AR00 Putative uncharacterized protein n=12 Tax=Enterobacteriaceae RepID=A8AR00_CITK8 Length = 126 Score = 94.5 bits (233), Expect = 9e-19, Method: Composition-based stats. Identities = 96/131 (73%), Positives = 107/131 (81%), Gaps = 8/131 (6%) Query: 1 MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQTQQIQQKGMLNQQLKT 60 MKRLLIL ALLPF GFAQPINT+NNPNQPGYQIPSQQRMQTQMQTQQ QQKGMLNQQLKT Sbjct: 1 MKRLLILAALLPFSGFAQPINTMNNPNQPGYQIPSQQRMQTQMQTQQTQQKGMLNQQLKT 60 Query: 61 QTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGGMLNSNRNPDSSLNQQHML 120 QTQLQQQHL+ Q+NNN+QRV Q Q R+Q+LPN NGGML+ S QQH+L Sbjct: 61 QTQLQQQHLQTQMNNNAQRVQQGQ------VREQVLPNNNGGMLSGGTRQSSG--QQHLL 112 Query: 121 PERRNGDMLNQ 131 P+R++GDMLN Sbjct: 113 PQRQSGDMLNN 123 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.292 0.118 0.319 Lambda K H 0.267 0.0368 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 521,973,325 Number of Sequences: 3077464 Number of extensions: 19710466 Number of successful extensions: 457715 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2071 Number of HSP's successfully gapped in prelim test: 2186 Number of HSP's that attempted gapping in prelim test: 276372 Number of HSP's gapped (non-prelim): 81483 length of query: 146 length of database: 1,040,396,356 effective HSP length: 109 effective length of query: 37 effective length of database: 704,952,780 effective search space: 26083252860 effective search space used: 26083252860 T: 11 A: 40 X1: 16 ( 6.7 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (20.8 bits) S2: 87 (38.3 bits)